Resource

Id: hg38/variant_frequencies/gnomAD_v2.1.1_liftover/exomes
Type: allele_score
Version: 0
Summary:
Description:
Labels:
  • reference_genome: hg38/genomes/GRCh38-hg38

Scores

ID Type Default annotation Description Histogram Range
ID str

-
gnomAD v2.1.1 liftover exomes variant ID

No histogram: Histogram for ID nullified for a region

 NO DOMAIN
AC int

exome_gnomad_v2_1_1_ac
Alternative allele count in the whole gnomAD exome samples v2.1.1
 HISTOGRAM FOR AC [0, 2.51e+05]
AN int

exome_gnomad_v2_1_1_an
Total allele count in the whole gnomAD exome samples v2.1.1
 HISTOGRAM FOR AN [0, 2.51e+05]
AF float

exome_gnomad_v2_1_1_af
Alternative allele frequency in the whole gnomAD exome samples v2.1.1
 HISTOGRAM FOR AF [0, 1]
AF_percent float

exome_gnomad_v2_1_1_af_percent
Alternative allele frequency in the whole gnomAD exome samples v2.1.1 as %
 HISTOGRAM FOR AF_percent [0, 100]
controls_AC int

exome_gnomad_v2_1_1_controls_ac
Alternative allele count in the controls subset of whole gnomAD exome samples v2.1.1
 HISTOGRAM FOR controls_AC [0, 1.09e+05]
controls_AN int

exome_gnomad_v2_1_1_controls_an
gnomAD v2.1.1 liftover exomes count of genotyped individuals in control group
 HISTOGRAM FOR controls_AN [0, 1.09e+05]
controls_AF float

-
Alternative allele frequency in the controls subset of whole gnomAD exome samples v2.1.1
 HISTOGRAM FOR controls_AF [0, 1]
controls_AF_percent float

exome_gnomad_v2_1_1_controls_af_percent
Alternative allele frequency in the controls subset of whole gnomAD exome samples v2.1.1 as %
 HISTOGRAM FOR controls_AF_percent [0, 100]
non_neuro_AC int

exome_gnomad_v2_1_1_non_neuro_ac
Alternative allele count in the non-neuro subset of whole gnomAD exome samples v2.1.1
 HISTOGRAM FOR non_neuro_AC [0, 2.08e+05]
non_neuro_AN int

exome_gnomad_v2_1_1_non_neuro_an
Total allele count in the non-neuro subset of whole gnomAD exome samples v2.1.1
 HISTOGRAM FOR non_neuro_AN [0, 2.08e+05]
non_neuro_AF float

-
Alternative allele frequency in the non-neuro subset of whole gnomAD exome samples v2.1.1
 HISTOGRAM FOR non_neuro_AF [0, 1]
non_neuro_AF_percent float

exome_gnomad_v2_1_1_non_neuro_af_percent
Alternative allele frequency in the non-neuro subset of whole gnomAD exome samples v2.1.1 as %
 HISTOGRAM FOR non_neuro_AF_percent [0, 100]

Files

Filename Size md5
combine_result.sh 473.0 B ea6255336bf53460c5c56ce1e9d8fa92
extract_info.sh 467.0 B 73f562dcc4f646d5566f2e4adc4d5990
genomic_resource.yaml 5.03 KB 7c38df4269c86882f90f61007a3ecb8f
gnomad.exomes.r2.1.1.extract.tsv.gz 927.36 MB f83f0702a0de977407f1220e6d40a19b
gnomad.exomes.r2.1.1.extract.tsv.gz.dvc 108.0 B b7ad2843a83eba2420a58ab133d25187
gnomad.exomes.r2.1.1.extract.tsv.gz.tbi 733.7 KB 6713e81d71d66f5eec813e9c709100ac
gnomad.exomes.r2.1.1.extract.tsv.gz.tbi.dvc 109.0 B cf0476673efa52c4b1531e6621c8eccb
hists/exome_gnomad_v2_1_1_af_percent 2.68 KB 6955afb1beee3fa319256ba6640397bd
hists/exome_gnomad_v2_1_1_af_percent.hist.toml 163.0 B c11fd0ed93eea3cf4d3c411d8ec991d4
statistics/