/src/gdal/frmts/zarr/zarr_v3_array.cpp
Line | Count | Source |
1 | | /****************************************************************************** |
2 | | * |
3 | | * Project: GDAL |
4 | | * Purpose: Zarr driver |
5 | | * Author: Even Rouault <even dot rouault at spatialys.com> |
6 | | * |
7 | | ****************************************************************************** |
8 | | * Copyright (c) 2021, Even Rouault <even dot rouault at spatialys.com> |
9 | | * |
10 | | * SPDX-License-Identifier: MIT |
11 | | ****************************************************************************/ |
12 | | |
13 | | #include "cpl_enumerate.h" |
14 | | #include "cpl_float.h" |
15 | | #include "cpl_vsi_virtual.h" |
16 | | #include "cpl_worker_thread_pool.h" |
17 | | #include "gdal_thread_pool.h" |
18 | | #include "zarr.h" |
19 | | #include "zarr_v3_codec.h" |
20 | | |
21 | | #include <algorithm> |
22 | | #include <cassert> |
23 | | #include <cinttypes> |
24 | | #include <cmath> |
25 | | #include <cstdlib> |
26 | | #include <limits> |
27 | | #include <map> |
28 | | #include <set> |
29 | | |
30 | | /************************************************************************/ |
31 | | /* ZarrV3Array::ZarrV3Array() */ |
32 | | /************************************************************************/ |
33 | | |
34 | | ZarrV3Array::ZarrV3Array( |
35 | | const std::shared_ptr<ZarrSharedResource> &poSharedResource, |
36 | | const std::shared_ptr<ZarrGroupBase> &poParent, const std::string &osName, |
37 | | const std::vector<std::shared_ptr<GDALDimension>> &aoDims, |
38 | | const GDALExtendedDataType &oType, const std::vector<DtypeElt> &aoDtypeElts, |
39 | | const std::vector<GUInt64> &anOuterBlockSize, |
40 | | const std::vector<GUInt64> &anInnerBlockSize) |
41 | 0 | : GDALAbstractMDArray(poParent->GetFullName(), osName), |
42 | 0 | ZarrArray(poSharedResource, poParent, osName, aoDims, oType, aoDtypeElts, |
43 | 0 | anOuterBlockSize, anInnerBlockSize) |
44 | 0 | { |
45 | 0 | } Unexecuted instantiation: ZarrV3Array::ZarrV3Array(std::__1::shared_ptr<ZarrSharedResource> const&, std::__1::shared_ptr<ZarrGroupBase> const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::vector<std::__1::shared_ptr<GDALDimension>, std::__1::allocator<std::__1::shared_ptr<GDALDimension> > > const&, GDALExtendedDataType const&, std::__1::vector<DtypeElt, std::__1::allocator<DtypeElt> > const&, std::__1::vector<unsigned long long, std::__1::allocator<unsigned long long> > const&, std::__1::vector<unsigned long long, std::__1::allocator<unsigned long long> > const&) Unexecuted instantiation: ZarrV3Array::ZarrV3Array(std::__1::shared_ptr<ZarrSharedResource> const&, std::__1::shared_ptr<ZarrGroupBase> const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::vector<std::__1::shared_ptr<GDALDimension>, std::__1::allocator<std::__1::shared_ptr<GDALDimension> > > const&, GDALExtendedDataType const&, std::__1::vector<DtypeElt, std::__1::allocator<DtypeElt> > const&, std::__1::vector<unsigned long long, std::__1::allocator<unsigned long long> > const&, std::__1::vector<unsigned long long, std::__1::allocator<unsigned long long> > const&) |
46 | | |
47 | | /************************************************************************/ |
48 | | /* ZarrV3Array::Create() */ |
49 | | /************************************************************************/ |
50 | | |
51 | | std::shared_ptr<ZarrV3Array> ZarrV3Array::Create( |
52 | | const std::shared_ptr<ZarrSharedResource> &poSharedResource, |
53 | | const std::shared_ptr<ZarrGroupBase> &poParent, const std::string &osName, |
54 | | const std::vector<std::shared_ptr<GDALDimension>> &aoDims, |
55 | | const GDALExtendedDataType &oType, const std::vector<DtypeElt> &aoDtypeElts, |
56 | | const std::vector<GUInt64> &anOuterBlockSize, |
57 | | const std::vector<GUInt64> &anInnerBlockSize) |
58 | 0 | { |
59 | 0 | auto arr = std::shared_ptr<ZarrV3Array>( |
60 | 0 | new ZarrV3Array(poSharedResource, poParent, osName, aoDims, oType, |
61 | 0 | aoDtypeElts, anOuterBlockSize, anInnerBlockSize)); |
62 | 0 | if (arr->m_nTotalInnerChunkCount == 0) |
63 | 0 | return nullptr; |
64 | 0 | arr->SetSelf(arr); |
65 | |
|
66 | 0 | return arr; |
67 | 0 | } |
68 | | |
69 | | /************************************************************************/ |
70 | | /* ~ZarrV3Array() */ |
71 | | /************************************************************************/ |
72 | | |
73 | | ZarrV3Array::~ZarrV3Array() |
74 | 0 | { |
75 | 0 | ZarrV3Array::Flush(); |
76 | 0 | } |
77 | | |
78 | | /************************************************************************/ |
79 | | /* Flush() */ |
80 | | /************************************************************************/ |
81 | | |
82 | | bool ZarrV3Array::Flush() |
83 | 0 | { |
84 | 0 | if (!m_bValid) |
85 | 0 | return true; |
86 | | |
87 | 0 | bool ret = ZarrV3Array::FlushDirtyBlock(); |
88 | |
|
89 | 0 | if (!m_aoDims.empty()) |
90 | 0 | { |
91 | 0 | for (const auto &poDim : m_aoDims) |
92 | 0 | { |
93 | 0 | const auto poZarrDim = |
94 | 0 | dynamic_cast<const ZarrDimension *>(poDim.get()); |
95 | 0 | if (poZarrDim && poZarrDim->IsXArrayDimension()) |
96 | 0 | { |
97 | 0 | if (poZarrDim->IsModified()) |
98 | 0 | m_bDefinitionModified = true; |
99 | 0 | } |
100 | 0 | else |
101 | 0 | { |
102 | 0 | break; |
103 | 0 | } |
104 | 0 | } |
105 | 0 | } |
106 | |
|
107 | 0 | CPLJSONObject oAttrs; |
108 | 0 | if (m_oAttrGroup.IsModified() || m_bUnitModified || m_bOffsetModified || |
109 | 0 | m_bScaleModified || m_bSRSModified) |
110 | 0 | { |
111 | 0 | m_bNew = false; |
112 | |
|
113 | 0 | oAttrs = SerializeSpecialAttributes(); |
114 | |
|
115 | 0 | m_bDefinitionModified = true; |
116 | 0 | } |
117 | |
|
118 | 0 | if (m_bDefinitionModified) |
119 | 0 | { |
120 | 0 | if (!Serialize(oAttrs)) |
121 | 0 | ret = false; |
122 | 0 | m_bDefinitionModified = false; |
123 | 0 | } |
124 | |
|
125 | 0 | return ret; |
126 | 0 | } |
127 | | |
128 | | /************************************************************************/ |
129 | | /* ZarrV3Array::Serialize() */ |
130 | | /************************************************************************/ |
131 | | |
132 | | bool ZarrV3Array::Serialize(const CPLJSONObject &oAttrs) |
133 | 0 | { |
134 | 0 | CPLJSONDocument oDoc; |
135 | 0 | CPLJSONObject oRoot = oDoc.GetRoot(); |
136 | |
|
137 | 0 | oRoot.Add("zarr_format", 3); |
138 | 0 | oRoot.Add("node_type", "array"); |
139 | |
|
140 | 0 | CPLJSONArray oShape; |
141 | 0 | for (const auto &poDim : m_aoDims) |
142 | 0 | { |
143 | 0 | oShape.Add(static_cast<GInt64>(poDim->GetSize())); |
144 | 0 | } |
145 | 0 | oRoot.Add("shape", oShape); |
146 | |
|
147 | 0 | oRoot.Add("data_type", m_dtype.ToString()); |
148 | |
|
149 | 0 | { |
150 | 0 | CPLJSONObject oChunkGrid; |
151 | 0 | oRoot.Add("chunk_grid", oChunkGrid); |
152 | 0 | oChunkGrid.Add("name", "regular"); |
153 | 0 | CPLJSONObject oConfiguration; |
154 | 0 | oChunkGrid.Add("configuration", oConfiguration); |
155 | 0 | CPLJSONArray oChunks; |
156 | 0 | for (const auto nBlockSize : m_anOuterBlockSize) |
157 | 0 | { |
158 | 0 | oChunks.Add(static_cast<GInt64>(nBlockSize)); |
159 | 0 | } |
160 | 0 | oConfiguration.Add("chunk_shape", oChunks); |
161 | 0 | } |
162 | |
|
163 | 0 | { |
164 | 0 | CPLJSONObject oChunkKeyEncoding; |
165 | 0 | oRoot.Add("chunk_key_encoding", oChunkKeyEncoding); |
166 | 0 | oChunkKeyEncoding.Add("name", m_bV2ChunkKeyEncoding ? "v2" : "default"); |
167 | 0 | CPLJSONObject oConfiguration; |
168 | 0 | oChunkKeyEncoding.Add("configuration", oConfiguration); |
169 | 0 | oConfiguration.Add("separator", m_osDimSeparator); |
170 | 0 | } |
171 | |
|
172 | 0 | if (m_pabyNoData == nullptr) |
173 | 0 | { |
174 | 0 | if (m_oType.GetNumericDataType() == GDT_Float16 || |
175 | 0 | m_oType.GetNumericDataType() == GDT_Float32 || |
176 | 0 | m_oType.GetNumericDataType() == GDT_Float64) |
177 | 0 | { |
178 | 0 | oRoot.Add("fill_value", "NaN"); |
179 | 0 | } |
180 | 0 | else |
181 | 0 | { |
182 | 0 | oRoot.AddNull("fill_value"); |
183 | 0 | } |
184 | 0 | } |
185 | 0 | else |
186 | 0 | { |
187 | 0 | if (m_oType.GetNumericDataType() == GDT_CFloat16 || |
188 | 0 | m_oType.GetNumericDataType() == GDT_CFloat32 || |
189 | 0 | m_oType.GetNumericDataType() == GDT_CFloat64) |
190 | 0 | { |
191 | 0 | double adfNoDataValue[2]; |
192 | 0 | GDALCopyWords(m_pabyNoData, m_oType.GetNumericDataType(), 0, |
193 | 0 | adfNoDataValue, GDT_CFloat64, 0, 1); |
194 | 0 | CPLJSONArray oArray; |
195 | 0 | for (int i = 0; i < 2; ++i) |
196 | 0 | { |
197 | 0 | if (std::isnan(adfNoDataValue[i])) |
198 | 0 | oArray.Add("NaN"); |
199 | 0 | else if (adfNoDataValue[i] == |
200 | 0 | std::numeric_limits<double>::infinity()) |
201 | 0 | oArray.Add("Infinity"); |
202 | 0 | else if (adfNoDataValue[i] == |
203 | 0 | -std::numeric_limits<double>::infinity()) |
204 | 0 | oArray.Add("-Infinity"); |
205 | 0 | else |
206 | 0 | oArray.Add(adfNoDataValue[i]); |
207 | 0 | } |
208 | 0 | oRoot.Add("fill_value", oArray); |
209 | 0 | } |
210 | 0 | else |
211 | 0 | { |
212 | 0 | SerializeNumericNoData(oRoot); |
213 | 0 | } |
214 | 0 | } |
215 | |
|
216 | 0 | if (m_poCodecs) |
217 | 0 | { |
218 | 0 | oRoot.Add("codecs", m_poCodecs->GetJSon()); |
219 | 0 | } |
220 | |
|
221 | 0 | oRoot.Add("attributes", oAttrs); |
222 | | |
223 | | // Set dimension_names |
224 | 0 | if (!m_aoDims.empty()) |
225 | 0 | { |
226 | 0 | CPLJSONArray oDimensions; |
227 | 0 | for (const auto &poDim : m_aoDims) |
228 | 0 | { |
229 | 0 | const auto poZarrDim = |
230 | 0 | dynamic_cast<const ZarrDimension *>(poDim.get()); |
231 | 0 | if (poZarrDim && poZarrDim->IsXArrayDimension()) |
232 | 0 | { |
233 | 0 | oDimensions.Add(poDim->GetName()); |
234 | 0 | } |
235 | 0 | else |
236 | 0 | { |
237 | 0 | oDimensions = CPLJSONArray(); |
238 | 0 | break; |
239 | 0 | } |
240 | 0 | } |
241 | 0 | if (oDimensions.Size() > 0) |
242 | 0 | { |
243 | 0 | oRoot.Add("dimension_names", oDimensions); |
244 | 0 | } |
245 | 0 | } |
246 | | |
247 | | // TODO: codecs |
248 | |
|
249 | 0 | const bool bRet = oDoc.Save(m_osFilename); |
250 | 0 | if (bRet) |
251 | 0 | m_poSharedResource->SetZMetadataItem(m_osFilename, oRoot); |
252 | 0 | return bRet; |
253 | 0 | } |
254 | | |
255 | | /************************************************************************/ |
256 | | /* ZarrV3Array::NeedDecodedBuffer() */ |
257 | | /************************************************************************/ |
258 | | |
259 | | bool ZarrV3Array::NeedDecodedBuffer() const |
260 | 0 | { |
261 | 0 | for (const auto &elt : m_aoDtypeElts) |
262 | 0 | { |
263 | 0 | if (elt.needByteSwapping || elt.gdalTypeIsApproxOfNative) |
264 | 0 | { |
265 | 0 | return true; |
266 | 0 | } |
267 | 0 | } |
268 | 0 | return false; |
269 | 0 | } |
270 | | |
271 | | /************************************************************************/ |
272 | | /* ZarrV3Array::AllocateWorkingBuffers() */ |
273 | | /************************************************************************/ |
274 | | |
275 | | bool ZarrV3Array::AllocateWorkingBuffers() const |
276 | 0 | { |
277 | 0 | if (m_bAllocateWorkingBuffersDone) |
278 | 0 | return m_bWorkingBuffersOK; |
279 | | |
280 | 0 | m_bAllocateWorkingBuffersDone = true; |
281 | |
|
282 | 0 | size_t nSizeNeeded = m_nInnerBlockSizeBytes; |
283 | 0 | if (NeedDecodedBuffer()) |
284 | 0 | { |
285 | 0 | size_t nDecodedBufferSize = m_oType.GetSize(); |
286 | 0 | for (const auto &nBlockSize : m_anInnerBlockSize) |
287 | 0 | { |
288 | 0 | if (nDecodedBufferSize > std::numeric_limits<size_t>::max() / |
289 | 0 | static_cast<size_t>(nBlockSize)) |
290 | 0 | { |
291 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "Too large chunk size"); |
292 | 0 | return false; |
293 | 0 | } |
294 | 0 | nDecodedBufferSize *= static_cast<size_t>(nBlockSize); |
295 | 0 | } |
296 | 0 | if (nSizeNeeded > |
297 | 0 | std::numeric_limits<size_t>::max() - nDecodedBufferSize) |
298 | 0 | { |
299 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "Too large chunk size"); |
300 | 0 | return false; |
301 | 0 | } |
302 | 0 | nSizeNeeded += nDecodedBufferSize; |
303 | 0 | } |
304 | | |
305 | | // Reserve a buffer for tile content |
306 | 0 | if (nSizeNeeded > 1024 * 1024 * 1024 && |
307 | 0 | !CPLTestBool(CPLGetConfigOption("ZARR_ALLOW_BIG_TILE_SIZE", "NO"))) |
308 | 0 | { |
309 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
310 | 0 | "Zarr tile allocation would require " CPL_FRMT_GUIB " bytes. " |
311 | 0 | "By default the driver limits to 1 GB. To allow that memory " |
312 | 0 | "allocation, set the ZARR_ALLOW_BIG_TILE_SIZE configuration " |
313 | 0 | "option to YES.", |
314 | 0 | static_cast<GUIntBig>(nSizeNeeded)); |
315 | 0 | return false; |
316 | 0 | } |
317 | | |
318 | 0 | m_bWorkingBuffersOK = |
319 | 0 | AllocateWorkingBuffers(m_abyRawBlockData, m_abyDecodedBlockData); |
320 | 0 | return m_bWorkingBuffersOK; |
321 | 0 | } |
322 | | |
323 | | bool ZarrV3Array::AllocateWorkingBuffers( |
324 | | ZarrByteVectorQuickResize &abyRawBlockData, |
325 | | ZarrByteVectorQuickResize &abyDecodedBlockData) const |
326 | 0 | { |
327 | | // This method should NOT modify any ZarrArray member, as it is going to |
328 | | // be called concurrently from several threads. |
329 | | |
330 | | // Set those #define to avoid accidental use of some global variables |
331 | 0 | #define m_abyRawBlockData cannot_use_here |
332 | 0 | #define m_abyDecodedBlockData cannot_use_here |
333 | |
|
334 | 0 | const size_t nSizeNeeded = m_nInnerBlockSizeBytes; |
335 | 0 | try |
336 | 0 | { |
337 | 0 | abyRawBlockData.resize(nSizeNeeded); |
338 | 0 | } |
339 | 0 | catch (const std::bad_alloc &e) |
340 | 0 | { |
341 | 0 | CPLError(CE_Failure, CPLE_OutOfMemory, "%s", e.what()); |
342 | 0 | return false; |
343 | 0 | } |
344 | | |
345 | 0 | if (NeedDecodedBuffer()) |
346 | 0 | { |
347 | 0 | size_t nDecodedBufferSize = m_oType.GetSize(); |
348 | 0 | for (const auto &nBlockSize : m_anInnerBlockSize) |
349 | 0 | { |
350 | 0 | nDecodedBufferSize *= static_cast<size_t>(nBlockSize); |
351 | 0 | } |
352 | 0 | try |
353 | 0 | { |
354 | 0 | abyDecodedBlockData.resize(nDecodedBufferSize); |
355 | 0 | } |
356 | 0 | catch (const std::bad_alloc &e) |
357 | 0 | { |
358 | 0 | CPLError(CE_Failure, CPLE_OutOfMemory, "%s", e.what()); |
359 | 0 | return false; |
360 | 0 | } |
361 | 0 | } |
362 | | |
363 | 0 | return true; |
364 | 0 | #undef m_abyRawBlockData |
365 | 0 | #undef m_abyDecodedBlockData |
366 | 0 | } |
367 | | |
368 | | /************************************************************************/ |
369 | | /* ZarrV3Array::LoadBlockData() */ |
370 | | /************************************************************************/ |
371 | | |
372 | | bool ZarrV3Array::LoadBlockData(const uint64_t *blockIndices, |
373 | | bool &bMissingBlockOut) const |
374 | 0 | { |
375 | 0 | return LoadBlockData(blockIndices, |
376 | 0 | false, // use mutex |
377 | 0 | m_poCodecs.get(), m_abyRawBlockData, |
378 | 0 | m_abyDecodedBlockData, bMissingBlockOut); |
379 | 0 | } |
380 | | |
381 | | bool ZarrV3Array::LoadBlockData(const uint64_t *blockIndices, bool bUseMutex, |
382 | | ZarrV3CodecSequence *poCodecs, |
383 | | ZarrByteVectorQuickResize &abyRawBlockData, |
384 | | ZarrByteVectorQuickResize &abyDecodedBlockData, |
385 | | bool &bMissingBlockOut) const |
386 | 0 | { |
387 | | // This method should NOT modify any ZarrArray member, as it is going to |
388 | | // be called concurrently from several threads. |
389 | | |
390 | | // Set those #define to avoid accidental use of some global variables |
391 | 0 | #define m_abyRawBlockData cannot_use_here |
392 | 0 | #define m_abyDecodedBlockData cannot_use_here |
393 | 0 | #define m_poCodecs cannot_use_here |
394 | |
|
395 | 0 | bMissingBlockOut = false; |
396 | |
|
397 | 0 | std::string osFilename; |
398 | 0 | if (poCodecs && poCodecs->SupportsPartialDecoding()) |
399 | 0 | { |
400 | 0 | std::vector<uint64_t> outerChunkIndices; |
401 | 0 | for (size_t i = 0; i < GetDimensionCount(); ++i) |
402 | 0 | { |
403 | | // Note: m_anOuterBlockSize[i]/m_anInnerBlockSize[i] is an integer |
404 | 0 | outerChunkIndices.push_back(blockIndices[i] * |
405 | 0 | m_anInnerBlockSize[i] / |
406 | 0 | m_anOuterBlockSize[i]); |
407 | 0 | } |
408 | |
|
409 | 0 | osFilename = BuildChunkFilename(outerChunkIndices.data()); |
410 | 0 | } |
411 | 0 | else |
412 | 0 | { |
413 | 0 | osFilename = BuildChunkFilename(blockIndices); |
414 | 0 | } |
415 | | |
416 | | // For network file systems, get the streaming version of the filename, |
417 | | // as we don't need arbitrary seeking in the file |
418 | | // ... unless we do partial decoding, in which case range requests within |
419 | | // a shard are much more efficient |
420 | 0 | if (!(poCodecs && poCodecs->SupportsPartialDecoding())) |
421 | 0 | { |
422 | 0 | osFilename = VSIFileManager::GetHandler(osFilename.c_str()) |
423 | 0 | ->GetStreamingFilename(osFilename); |
424 | 0 | } |
425 | | |
426 | | // First if we have a tile presence cache, check tile presence from it |
427 | 0 | bool bEarlyRet; |
428 | 0 | if (bUseMutex) |
429 | 0 | { |
430 | 0 | std::lock_guard<std::mutex> oLock(m_oMutex); |
431 | 0 | bEarlyRet = IsBlockMissingFromCacheInfo(osFilename, blockIndices); |
432 | 0 | } |
433 | 0 | else |
434 | 0 | { |
435 | 0 | bEarlyRet = IsBlockMissingFromCacheInfo(osFilename, blockIndices); |
436 | 0 | } |
437 | 0 | if (bEarlyRet) |
438 | 0 | { |
439 | 0 | bMissingBlockOut = true; |
440 | 0 | return true; |
441 | 0 | } |
442 | 0 | VSIVirtualHandleUniquePtr fp; |
443 | | // This is the number of files returned in a S3 directory listing operation |
444 | 0 | constexpr uint64_t MAX_TILES_ALLOWED_FOR_DIRECTORY_LISTING = 1000; |
445 | 0 | const char *const apszOpenOptions[] = {"IGNORE_FILENAME_RESTRICTIONS=YES", |
446 | 0 | nullptr}; |
447 | 0 | const auto nErrorBefore = CPLGetErrorCounter(); |
448 | 0 | if ((m_osDimSeparator == "/" && !m_anOuterBlockSize.empty() && |
449 | 0 | m_anOuterBlockSize.back() > MAX_TILES_ALLOWED_FOR_DIRECTORY_LISTING) || |
450 | 0 | (m_osDimSeparator != "/" && |
451 | 0 | m_nTotalInnerChunkCount > MAX_TILES_ALLOWED_FOR_DIRECTORY_LISTING)) |
452 | 0 | { |
453 | | // Avoid issuing ReadDir() when a lot of files are expected |
454 | 0 | CPLConfigOptionSetter optionSetter("GDAL_DISABLE_READDIR_ON_OPEN", |
455 | 0 | "YES", true); |
456 | 0 | fp.reset(VSIFOpenEx2L(osFilename.c_str(), "rb", 0, apszOpenOptions)); |
457 | 0 | } |
458 | 0 | else |
459 | 0 | { |
460 | 0 | fp.reset(VSIFOpenEx2L(osFilename.c_str(), "rb", 0, apszOpenOptions)); |
461 | 0 | } |
462 | 0 | if (fp == nullptr) |
463 | 0 | { |
464 | 0 | if (nErrorBefore != CPLGetErrorCounter()) |
465 | 0 | { |
466 | 0 | return false; |
467 | 0 | } |
468 | 0 | else |
469 | 0 | { |
470 | | // Missing files are OK and indicate nodata_value |
471 | 0 | CPLDebugOnly(ZARR_DEBUG_KEY, "Block %s missing (=nodata)", |
472 | 0 | osFilename.c_str()); |
473 | 0 | bMissingBlockOut = true; |
474 | 0 | return true; |
475 | 0 | } |
476 | 0 | } |
477 | | |
478 | 0 | bMissingBlockOut = false; |
479 | |
|
480 | 0 | if (poCodecs && poCodecs->SupportsPartialDecoding()) |
481 | 0 | { |
482 | 0 | std::vector<size_t> anStartIdx; |
483 | 0 | std::vector<size_t> anCount; |
484 | 0 | for (size_t i = 0; i < GetDimensionCount(); ++i) |
485 | 0 | { |
486 | 0 | anStartIdx.push_back( |
487 | 0 | static_cast<size_t>((blockIndices[i] * m_anInnerBlockSize[i]) % |
488 | 0 | m_anOuterBlockSize[i])); |
489 | 0 | anCount.push_back(static_cast<size_t>(m_anInnerBlockSize[i])); |
490 | 0 | } |
491 | 0 | if (!poCodecs->DecodePartial(fp.get(), abyRawBlockData, anStartIdx, |
492 | 0 | anCount)) |
493 | 0 | return false; |
494 | 0 | } |
495 | 0 | else |
496 | 0 | { |
497 | 0 | CPLAssert(abyRawBlockData.capacity() >= m_nInnerBlockSizeBytes); |
498 | | // should not fail |
499 | 0 | abyRawBlockData.resize(m_nInnerBlockSizeBytes); |
500 | |
|
501 | 0 | bool bRet = true; |
502 | 0 | size_t nRawDataSize = abyRawBlockData.size(); |
503 | 0 | if (poCodecs == nullptr) |
504 | 0 | { |
505 | 0 | nRawDataSize = fp->Read(&abyRawBlockData[0], 1, nRawDataSize); |
506 | 0 | } |
507 | 0 | else |
508 | 0 | { |
509 | 0 | fp->Seek(0, SEEK_END); |
510 | 0 | const auto nSize = fp->Tell(); |
511 | 0 | fp->Seek(0, SEEK_SET); |
512 | 0 | if (nSize > |
513 | 0 | static_cast<vsi_l_offset>(std::numeric_limits<int>::max())) |
514 | 0 | { |
515 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "Too large tile %s", |
516 | 0 | osFilename.c_str()); |
517 | 0 | bRet = false; |
518 | 0 | } |
519 | 0 | else |
520 | 0 | { |
521 | 0 | try |
522 | 0 | { |
523 | 0 | abyRawBlockData.resize(static_cast<size_t>(nSize)); |
524 | 0 | } |
525 | 0 | catch (const std::exception &) |
526 | 0 | { |
527 | 0 | CPLError(CE_Failure, CPLE_OutOfMemory, |
528 | 0 | "Cannot allocate memory for tile %s", |
529 | 0 | osFilename.c_str()); |
530 | 0 | bRet = false; |
531 | 0 | } |
532 | |
|
533 | 0 | if (bRet && |
534 | 0 | (abyRawBlockData.empty() || |
535 | 0 | fp->Read(&abyRawBlockData[0], 1, abyRawBlockData.size()) != |
536 | 0 | abyRawBlockData.size())) |
537 | 0 | { |
538 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
539 | 0 | "Could not read tile %s correctly", |
540 | 0 | osFilename.c_str()); |
541 | 0 | bRet = false; |
542 | 0 | } |
543 | 0 | else |
544 | 0 | { |
545 | 0 | if (!poCodecs->Decode(abyRawBlockData)) |
546 | 0 | { |
547 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
548 | 0 | "Decompression of tile %s failed", |
549 | 0 | osFilename.c_str()); |
550 | 0 | bRet = false; |
551 | 0 | } |
552 | 0 | } |
553 | 0 | } |
554 | 0 | } |
555 | 0 | if (!bRet) |
556 | 0 | return false; |
557 | | |
558 | 0 | if (nRawDataSize != abyRawBlockData.size()) |
559 | 0 | { |
560 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
561 | 0 | "Decompressed tile %s has not expected size. " |
562 | 0 | "Got %u instead of %u", |
563 | 0 | osFilename.c_str(), |
564 | 0 | static_cast<unsigned>(abyRawBlockData.size()), |
565 | 0 | static_cast<unsigned>(nRawDataSize)); |
566 | 0 | return false; |
567 | 0 | } |
568 | 0 | } |
569 | | |
570 | 0 | if (!abyDecodedBlockData.empty()) |
571 | 0 | { |
572 | 0 | const size_t nSourceSize = |
573 | 0 | m_aoDtypeElts.back().nativeOffset + m_aoDtypeElts.back().nativeSize; |
574 | 0 | const auto nDTSize = m_oType.GetSize(); |
575 | 0 | const size_t nValues = abyDecodedBlockData.size() / nDTSize; |
576 | 0 | CPLAssert(nValues == m_nInnerBlockSizeBytes / nSourceSize); |
577 | 0 | const GByte *pSrc = abyRawBlockData.data(); |
578 | 0 | GByte *pDst = &abyDecodedBlockData[0]; |
579 | 0 | for (size_t i = 0; i < nValues; |
580 | 0 | i++, pSrc += nSourceSize, pDst += nDTSize) |
581 | 0 | { |
582 | 0 | DecodeSourceElt(m_aoDtypeElts, pSrc, pDst); |
583 | 0 | } |
584 | 0 | } |
585 | |
|
586 | 0 | return true; |
587 | |
|
588 | 0 | #undef m_abyRawBlockData |
589 | 0 | #undef m_abyDecodedBlockData |
590 | 0 | #undef m_poCodecs |
591 | 0 | } |
592 | | |
593 | | /************************************************************************/ |
594 | | /* ZarrV3Array::IRead() */ |
595 | | /************************************************************************/ |
596 | | |
597 | | bool ZarrV3Array::IRead(const GUInt64 *arrayStartIdx, const size_t *count, |
598 | | const GInt64 *arrayStep, const GPtrDiff_t *bufferStride, |
599 | | const GDALExtendedDataType &bufferDataType, |
600 | | void *pDstBuffer) const |
601 | 0 | { |
602 | | // For sharded arrays, pre-populate the block cache via ReadMultiRange() |
603 | | // so that the base-class block-by-block loop hits memory, not HTTP. |
604 | 0 | if (m_poCodecs && m_poCodecs->SupportsPartialDecoding()) |
605 | 0 | { |
606 | 0 | PreloadShardedBlocks(arrayStartIdx, count); |
607 | 0 | } |
608 | 0 | return ZarrArray::IRead(arrayStartIdx, count, arrayStep, bufferStride, |
609 | 0 | bufferDataType, pDstBuffer); |
610 | 0 | } |
611 | | |
612 | | /************************************************************************/ |
613 | | /* ZarrV3Array::PreloadShardedBlocks() */ |
614 | | /************************************************************************/ |
615 | | |
616 | | void ZarrV3Array::PreloadShardedBlocks(const GUInt64 *arrayStartIdx, |
617 | | const size_t *count) const |
618 | 0 | { |
619 | 0 | const size_t nDims = m_aoDims.size(); |
620 | 0 | if (nDims == 0) |
621 | 0 | return; |
622 | | |
623 | | // Calculate needed block index range |
624 | 0 | std::vector<uint64_t> anBlockMin(nDims), anBlockMax(nDims); |
625 | 0 | size_t nTotalBlocks = 1; |
626 | 0 | for (size_t i = 0; i < nDims; ++i) |
627 | 0 | { |
628 | 0 | anBlockMin[i] = arrayStartIdx[i] / m_anInnerBlockSize[i]; |
629 | 0 | anBlockMax[i] = |
630 | 0 | (arrayStartIdx[i] + count[i] - 1) / m_anInnerBlockSize[i]; |
631 | 0 | nTotalBlocks *= static_cast<size_t>(anBlockMax[i] - anBlockMin[i] + 1); |
632 | 0 | } |
633 | |
|
634 | 0 | if (nTotalBlocks <= 1) |
635 | 0 | return; // single block — no batching benefit |
636 | | |
637 | 0 | CPLDebugOnly("ZARR", "PreloadShardedBlocks: %" PRIu64 " blocks to batch", |
638 | 0 | static_cast<uint64_t>(nTotalBlocks)); |
639 | | |
640 | | // Enumerate all needed blocks, grouped by shard filename |
641 | 0 | struct BlockInfo |
642 | 0 | { |
643 | 0 | std::vector<uint64_t> anBlockIndices{}; |
644 | 0 | std::vector<size_t> anStartIdx{}; |
645 | 0 | std::vector<size_t> anCount{}; |
646 | 0 | }; |
647 | |
|
648 | 0 | std::map<std::string, std::vector<BlockInfo>> oShardToBlocks; |
649 | | |
650 | | // Iterate over all needed block indices |
651 | 0 | std::vector<uint64_t> anCur(nDims); |
652 | 0 | size_t dimIdx = 0; |
653 | 0 | lbl_next: |
654 | 0 | if (dimIdx == nDims) |
655 | 0 | { |
656 | | // Skip blocks already in cache |
657 | 0 | const std::vector<uint64_t> cacheKey(anCur.begin(), anCur.end()); |
658 | 0 | if (m_oChunkCache.find(cacheKey) == m_oChunkCache.end()) |
659 | 0 | { |
660 | | // Compute shard filename and inner chunk start/count |
661 | 0 | std::vector<uint64_t> outerIdx(nDims); |
662 | 0 | BlockInfo info; |
663 | 0 | info.anBlockIndices = anCur; |
664 | 0 | info.anStartIdx.resize(nDims); |
665 | 0 | info.anCount.resize(nDims); |
666 | 0 | for (size_t i = 0; i < nDims; ++i) |
667 | 0 | { |
668 | 0 | outerIdx[i] = |
669 | 0 | anCur[i] * m_anInnerBlockSize[i] / m_anOuterBlockSize[i]; |
670 | 0 | info.anStartIdx[i] = static_cast<size_t>( |
671 | 0 | (anCur[i] * m_anInnerBlockSize[i]) % m_anOuterBlockSize[i]); |
672 | 0 | info.anCount[i] = static_cast<size_t>(m_anInnerBlockSize[i]); |
673 | 0 | } |
674 | |
|
675 | 0 | std::string osFilename = BuildChunkFilename(outerIdx.data()); |
676 | 0 | oShardToBlocks[osFilename].push_back(std::move(info)); |
677 | 0 | } |
678 | 0 | } |
679 | 0 | else |
680 | 0 | { |
681 | 0 | anCur[dimIdx] = anBlockMin[dimIdx]; |
682 | 0 | while (true) |
683 | 0 | { |
684 | 0 | dimIdx++; |
685 | 0 | goto lbl_next; |
686 | 0 | lbl_return: |
687 | 0 | dimIdx--; |
688 | 0 | if (anCur[dimIdx] == anBlockMax[dimIdx]) |
689 | 0 | break; |
690 | 0 | ++anCur[dimIdx]; |
691 | 0 | } |
692 | 0 | } |
693 | 0 | if (dimIdx > 0) |
694 | 0 | goto lbl_return; |
695 | | |
696 | | // For each shard with >1 uncached block, batch-read |
697 | 0 | const char *const apszOpenOptions[] = {"IGNORE_FILENAME_RESTRICTIONS=YES", |
698 | 0 | nullptr}; |
699 | |
|
700 | 0 | for (auto &[osFilename, aBlocks] : oShardToBlocks) |
701 | 0 | { |
702 | 0 | if (aBlocks.size() <= 1) |
703 | 0 | continue; |
704 | | |
705 | 0 | VSIVirtualHandleUniquePtr fp( |
706 | 0 | VSIFOpenEx2L(osFilename.c_str(), "rb", 0, apszOpenOptions)); |
707 | 0 | if (!fp) |
708 | 0 | continue; |
709 | | |
710 | | // Build request list |
711 | 0 | std::vector<std::pair<std::vector<size_t>, std::vector<size_t>>> |
712 | 0 | anRequests; |
713 | 0 | anRequests.reserve(aBlocks.size()); |
714 | 0 | for (const auto &info : aBlocks) |
715 | 0 | { |
716 | 0 | anRequests.push_back({info.anStartIdx, info.anCount}); |
717 | 0 | } |
718 | |
|
719 | 0 | std::vector<ZarrByteVectorQuickResize> aResults; |
720 | 0 | if (!m_poCodecs->BatchDecodePartial(fp.get(), anRequests, aResults)) |
721 | 0 | continue; |
722 | | |
723 | | // Store results in block cache |
724 | 0 | const bool bNeedDecode = NeedDecodedBuffer(); |
725 | 0 | for (size_t i = 0; i < aBlocks.size(); ++i) |
726 | 0 | { |
727 | 0 | if (aResults[i].empty()) |
728 | 0 | { |
729 | 0 | CachedBlock cachedBlock; |
730 | 0 | m_oChunkCache[aBlocks[i].anBlockIndices] = |
731 | 0 | std::move(cachedBlock); |
732 | 0 | continue; |
733 | 0 | } |
734 | | |
735 | 0 | CachedBlock cachedBlock; |
736 | 0 | if (bNeedDecode) |
737 | 0 | { |
738 | 0 | const size_t nSourceSize = m_aoDtypeElts.back().nativeOffset + |
739 | 0 | m_aoDtypeElts.back().nativeSize; |
740 | 0 | const auto nGDALDTSize = m_oType.GetSize(); |
741 | 0 | const size_t nValues = aResults[i].size() / nSourceSize; |
742 | 0 | ZarrByteVectorQuickResize abyDecoded; |
743 | 0 | abyDecoded.resize(nValues * nGDALDTSize); |
744 | 0 | const GByte *pSrc = aResults[i].data(); |
745 | 0 | GByte *pDst = abyDecoded.data(); |
746 | 0 | for (size_t v = 0; v < nValues; |
747 | 0 | v++, pSrc += nSourceSize, pDst += nGDALDTSize) |
748 | 0 | { |
749 | 0 | DecodeSourceElt(m_aoDtypeElts, pSrc, pDst); |
750 | 0 | } |
751 | 0 | std::swap(cachedBlock.abyDecoded, abyDecoded); |
752 | 0 | } |
753 | 0 | else |
754 | 0 | { |
755 | 0 | std::swap(cachedBlock.abyDecoded, aResults[i]); |
756 | 0 | } |
757 | 0 | m_oChunkCache[aBlocks[i].anBlockIndices] = std::move(cachedBlock); |
758 | 0 | } |
759 | 0 | } |
760 | 0 | } |
761 | | |
762 | | /************************************************************************/ |
763 | | /* ZarrV3Array::IAdviseRead() */ |
764 | | /************************************************************************/ |
765 | | |
766 | | bool ZarrV3Array::IAdviseRead(const GUInt64 *arrayStartIdx, const size_t *count, |
767 | | CSLConstList papszOptions) const |
768 | 0 | { |
769 | 0 | std::vector<uint64_t> anIndicesCur; |
770 | 0 | int nThreadsMax = 0; |
771 | 0 | std::vector<uint64_t> anReqBlocksIndices; |
772 | 0 | size_t nReqBlocks = 0; |
773 | 0 | if (!IAdviseReadCommon(arrayStartIdx, count, papszOptions, anIndicesCur, |
774 | 0 | nThreadsMax, anReqBlocksIndices, nReqBlocks)) |
775 | 0 | { |
776 | 0 | return false; |
777 | 0 | } |
778 | 0 | if (nThreadsMax <= 1) |
779 | 0 | { |
780 | 0 | return true; |
781 | 0 | } |
782 | | |
783 | 0 | const int nThreads = static_cast<int>( |
784 | 0 | std::min(static_cast<size_t>(nThreadsMax), nReqBlocks)); |
785 | |
|
786 | 0 | CPLWorkerThreadPool *wtp = GDALGetGlobalThreadPool(nThreadsMax); |
787 | 0 | if (wtp == nullptr) |
788 | 0 | return false; |
789 | | |
790 | 0 | struct JobStruct |
791 | 0 | { |
792 | 0 | JobStruct() = default; |
793 | |
|
794 | 0 | JobStruct(const JobStruct &) = delete; |
795 | 0 | JobStruct &operator=(const JobStruct &) = delete; |
796 | |
|
797 | 0 | JobStruct(JobStruct &&) = default; |
798 | 0 | JobStruct &operator=(JobStruct &&) = default; |
799 | |
|
800 | 0 | const ZarrV3Array *poArray = nullptr; |
801 | 0 | bool *pbGlobalStatus = nullptr; |
802 | 0 | int *pnRemainingThreads = nullptr; |
803 | 0 | const std::vector<uint64_t> *panReqBlocksIndices = nullptr; |
804 | 0 | size_t nFirstIdx = 0; |
805 | 0 | size_t nLastIdxNotIncluded = 0; |
806 | 0 | }; |
807 | |
|
808 | 0 | std::vector<JobStruct> asJobStructs; |
809 | |
|
810 | 0 | bool bGlobalStatus = true; |
811 | 0 | int nRemainingThreads = nThreads; |
812 | | // Check for very highly overflow in below loop |
813 | 0 | assert(static_cast<size_t>(nThreads) < |
814 | 0 | std::numeric_limits<size_t>::max() / nReqBlocks); |
815 | | |
816 | | // Setup jobs |
817 | 0 | for (int i = 0; i < nThreads; i++) |
818 | 0 | { |
819 | 0 | JobStruct jobStruct; |
820 | 0 | jobStruct.poArray = this; |
821 | 0 | jobStruct.pbGlobalStatus = &bGlobalStatus; |
822 | 0 | jobStruct.pnRemainingThreads = &nRemainingThreads; |
823 | 0 | jobStruct.panReqBlocksIndices = &anReqBlocksIndices; |
824 | 0 | jobStruct.nFirstIdx = static_cast<size_t>(i * nReqBlocks / nThreads); |
825 | 0 | jobStruct.nLastIdxNotIncluded = std::min( |
826 | 0 | static_cast<size_t>((i + 1) * nReqBlocks / nThreads), nReqBlocks); |
827 | 0 | asJobStructs.emplace_back(std::move(jobStruct)); |
828 | 0 | } |
829 | |
|
830 | 0 | const auto JobFunc = [](void *pThreadData) |
831 | 0 | { |
832 | 0 | const JobStruct *jobStruct = |
833 | 0 | static_cast<const JobStruct *>(pThreadData); |
834 | |
|
835 | 0 | const auto poArray = jobStruct->poArray; |
836 | 0 | const size_t l_nDims = poArray->GetDimensionCount(); |
837 | 0 | ZarrByteVectorQuickResize abyRawBlockData; |
838 | 0 | ZarrByteVectorQuickResize abyDecodedBlockData; |
839 | 0 | std::unique_ptr<ZarrV3CodecSequence> poCodecs; |
840 | 0 | if (poArray->m_poCodecs) |
841 | 0 | { |
842 | 0 | std::lock_guard<std::mutex> oLock(poArray->m_oMutex); |
843 | 0 | poCodecs = poArray->m_poCodecs->Clone(); |
844 | 0 | } |
845 | |
|
846 | 0 | for (size_t iReq = jobStruct->nFirstIdx; |
847 | 0 | iReq < jobStruct->nLastIdxNotIncluded; ++iReq) |
848 | 0 | { |
849 | | // Check if we must early exit |
850 | 0 | { |
851 | 0 | std::lock_guard<std::mutex> oLock(poArray->m_oMutex); |
852 | 0 | if (!(*jobStruct->pbGlobalStatus)) |
853 | 0 | return; |
854 | 0 | } |
855 | | |
856 | 0 | const uint64_t *blockIndices = |
857 | 0 | jobStruct->panReqBlocksIndices->data() + iReq * l_nDims; |
858 | |
|
859 | 0 | if (!poArray->AllocateWorkingBuffers(abyRawBlockData, |
860 | 0 | abyDecodedBlockData)) |
861 | 0 | { |
862 | 0 | std::lock_guard<std::mutex> oLock(poArray->m_oMutex); |
863 | 0 | *jobStruct->pbGlobalStatus = false; |
864 | 0 | break; |
865 | 0 | } |
866 | | |
867 | 0 | bool bIsEmpty = false; |
868 | 0 | bool success = poArray->LoadBlockData( |
869 | 0 | blockIndices, |
870 | 0 | true, // use mutex |
871 | 0 | poCodecs.get(), abyRawBlockData, abyDecodedBlockData, bIsEmpty); |
872 | |
|
873 | 0 | std::lock_guard<std::mutex> oLock(poArray->m_oMutex); |
874 | 0 | if (!success) |
875 | 0 | { |
876 | 0 | *jobStruct->pbGlobalStatus = false; |
877 | 0 | break; |
878 | 0 | } |
879 | | |
880 | 0 | CachedBlock cachedBlock; |
881 | 0 | if (!bIsEmpty) |
882 | 0 | { |
883 | 0 | if (!abyDecodedBlockData.empty()) |
884 | 0 | std::swap(cachedBlock.abyDecoded, abyDecodedBlockData); |
885 | 0 | else |
886 | 0 | std::swap(cachedBlock.abyDecoded, abyRawBlockData); |
887 | 0 | } |
888 | 0 | const std::vector<uint64_t> cacheKey{blockIndices, |
889 | 0 | blockIndices + l_nDims}; |
890 | 0 | poArray->m_oChunkCache[cacheKey] = std::move(cachedBlock); |
891 | 0 | } |
892 | | |
893 | 0 | std::lock_guard<std::mutex> oLock(poArray->m_oMutex); |
894 | 0 | (*jobStruct->pnRemainingThreads)--; |
895 | 0 | }; |
896 | | |
897 | | // Start jobs |
898 | 0 | for (int i = 0; i < nThreads; i++) |
899 | 0 | { |
900 | 0 | if (!wtp->SubmitJob(JobFunc, &asJobStructs[i])) |
901 | 0 | { |
902 | 0 | std::lock_guard<std::mutex> oLock(m_oMutex); |
903 | 0 | bGlobalStatus = false; |
904 | 0 | nRemainingThreads = i; |
905 | 0 | break; |
906 | 0 | } |
907 | 0 | } |
908 | | |
909 | | // Wait for all jobs to be finished |
910 | 0 | while (true) |
911 | 0 | { |
912 | 0 | { |
913 | 0 | std::lock_guard<std::mutex> oLock(m_oMutex); |
914 | 0 | if (nRemainingThreads == 0) |
915 | 0 | break; |
916 | 0 | } |
917 | 0 | wtp->WaitEvent(); |
918 | 0 | } |
919 | |
|
920 | 0 | return bGlobalStatus; |
921 | 0 | } |
922 | | |
923 | | /************************************************************************/ |
924 | | /* ZarrV3Array::FlushDirtyBlock() */ |
925 | | /************************************************************************/ |
926 | | |
927 | | bool ZarrV3Array::FlushDirtyBlock() const |
928 | 0 | { |
929 | 0 | if (!m_bDirtyBlock) |
930 | 0 | return true; |
931 | 0 | m_bDirtyBlock = false; |
932 | |
|
933 | 0 | std::string osFilename = BuildChunkFilename(m_anCachedBlockIndices.data()); |
934 | |
|
935 | 0 | const size_t nSourceSize = |
936 | 0 | m_aoDtypeElts.back().nativeOffset + m_aoDtypeElts.back().nativeSize; |
937 | 0 | const auto &abyBlock = m_abyDecodedBlockData.empty() |
938 | 0 | ? m_abyRawBlockData |
939 | 0 | : m_abyDecodedBlockData; |
940 | |
|
941 | 0 | if (IsEmptyBlock(abyBlock)) |
942 | 0 | { |
943 | 0 | m_bCachedBlockEmpty = true; |
944 | |
|
945 | 0 | VSIStatBufL sStat; |
946 | 0 | if (VSIStatL(osFilename.c_str(), &sStat) == 0) |
947 | 0 | { |
948 | 0 | CPLDebugOnly(ZARR_DEBUG_KEY, |
949 | 0 | "Deleting tile %s that has now empty content", |
950 | 0 | osFilename.c_str()); |
951 | 0 | return VSIUnlink(osFilename.c_str()) == 0; |
952 | 0 | } |
953 | 0 | return true; |
954 | 0 | } |
955 | | |
956 | 0 | if (!m_abyDecodedBlockData.empty()) |
957 | 0 | { |
958 | 0 | const size_t nDTSize = m_oType.GetSize(); |
959 | 0 | const size_t nValues = m_abyDecodedBlockData.size() / nDTSize; |
960 | 0 | GByte *pDst = &m_abyRawBlockData[0]; |
961 | 0 | const GByte *pSrc = m_abyDecodedBlockData.data(); |
962 | 0 | for (size_t i = 0; i < nValues; |
963 | 0 | i++, pDst += nSourceSize, pSrc += nDTSize) |
964 | 0 | { |
965 | 0 | EncodeElt(m_aoDtypeElts, pSrc, pDst); |
966 | 0 | } |
967 | 0 | } |
968 | |
|
969 | 0 | const size_t nSizeBefore = m_abyRawBlockData.size(); |
970 | 0 | if (m_poCodecs) |
971 | 0 | { |
972 | 0 | if (!m_poCodecs->Encode(m_abyRawBlockData)) |
973 | 0 | { |
974 | 0 | m_abyRawBlockData.resize(nSizeBefore); |
975 | 0 | return false; |
976 | 0 | } |
977 | 0 | } |
978 | | |
979 | 0 | if (m_osDimSeparator == "/") |
980 | 0 | { |
981 | 0 | std::string osDir = CPLGetDirnameSafe(osFilename.c_str()); |
982 | 0 | VSIStatBufL sStat; |
983 | 0 | if (VSIStatL(osDir.c_str(), &sStat) != 0) |
984 | 0 | { |
985 | 0 | if (VSIMkdirRecursive(osDir.c_str(), 0755) != 0) |
986 | 0 | { |
987 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
988 | 0 | "Cannot create directory %s", osDir.c_str()); |
989 | 0 | m_abyRawBlockData.resize(nSizeBefore); |
990 | 0 | return false; |
991 | 0 | } |
992 | 0 | } |
993 | 0 | } |
994 | | |
995 | 0 | VSILFILE *fp = VSIFOpenL(osFilename.c_str(), "wb"); |
996 | 0 | if (fp == nullptr) |
997 | 0 | { |
998 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "Cannot create tile %s", |
999 | 0 | osFilename.c_str()); |
1000 | 0 | m_abyRawBlockData.resize(nSizeBefore); |
1001 | 0 | return false; |
1002 | 0 | } |
1003 | | |
1004 | 0 | bool bRet = true; |
1005 | 0 | const size_t nRawDataSize = m_abyRawBlockData.size(); |
1006 | 0 | if (VSIFWriteL(m_abyRawBlockData.data(), 1, nRawDataSize, fp) != |
1007 | 0 | nRawDataSize) |
1008 | 0 | { |
1009 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
1010 | 0 | "Could not write tile %s correctly", osFilename.c_str()); |
1011 | 0 | bRet = false; |
1012 | 0 | } |
1013 | 0 | VSIFCloseL(fp); |
1014 | |
|
1015 | 0 | m_abyRawBlockData.resize(nSizeBefore); |
1016 | |
|
1017 | 0 | return bRet; |
1018 | 0 | } |
1019 | | |
1020 | | /************************************************************************/ |
1021 | | /* ZarrV3Array::IWrite() */ |
1022 | | /************************************************************************/ |
1023 | | |
1024 | | bool ZarrV3Array::IWrite(const GUInt64 *arrayStartIdx, const size_t *count, |
1025 | | const GInt64 *arrayStep, |
1026 | | const GPtrDiff_t *bufferStride, |
1027 | | const GDALExtendedDataType &bufferDataType, |
1028 | | const void *pSrcBuffer) |
1029 | 0 | { |
1030 | 0 | if (m_poCodecs && m_poCodecs->SupportsPartialDecoding()) |
1031 | 0 | { |
1032 | 0 | CPLError(CE_Failure, CPLE_NotSupported, |
1033 | 0 | "Writing to sharded dataset is not supported"); |
1034 | 0 | return false; |
1035 | 0 | } |
1036 | 0 | return ZarrArray::IWrite(arrayStartIdx, count, arrayStep, bufferStride, |
1037 | 0 | bufferDataType, pSrcBuffer); |
1038 | 0 | } |
1039 | | |
1040 | | /************************************************************************/ |
1041 | | /* BuildChunkFilename() */ |
1042 | | /************************************************************************/ |
1043 | | |
1044 | | std::string ZarrV3Array::BuildChunkFilename(const uint64_t *blockIndices) const |
1045 | 0 | { |
1046 | 0 | if (m_aoDims.empty()) |
1047 | 0 | { |
1048 | 0 | return CPLFormFilenameSafe( |
1049 | 0 | CPLGetDirnameSafe(m_osFilename.c_str()).c_str(), |
1050 | 0 | m_bV2ChunkKeyEncoding ? "0" : "c", nullptr); |
1051 | 0 | } |
1052 | 0 | else |
1053 | 0 | { |
1054 | 0 | std::string osFilename(CPLGetDirnameSafe(m_osFilename.c_str())); |
1055 | 0 | osFilename += '/'; |
1056 | 0 | if (!m_bV2ChunkKeyEncoding) |
1057 | 0 | { |
1058 | 0 | osFilename += 'c'; |
1059 | 0 | } |
1060 | 0 | for (size_t i = 0; i < m_aoDims.size(); ++i) |
1061 | 0 | { |
1062 | 0 | if (i > 0 || !m_bV2ChunkKeyEncoding) |
1063 | 0 | osFilename += m_osDimSeparator; |
1064 | 0 | osFilename += std::to_string(blockIndices[i]); |
1065 | 0 | } |
1066 | 0 | return osFilename; |
1067 | 0 | } |
1068 | 0 | } |
1069 | | |
1070 | | /************************************************************************/ |
1071 | | /* GetDataDirectory() */ |
1072 | | /************************************************************************/ |
1073 | | |
1074 | | std::string ZarrV3Array::GetDataDirectory() const |
1075 | 0 | { |
1076 | 0 | return std::string(CPLGetDirnameSafe(m_osFilename.c_str())); |
1077 | 0 | } |
1078 | | |
1079 | | /************************************************************************/ |
1080 | | /* GetChunkIndicesFromFilename() */ |
1081 | | /************************************************************************/ |
1082 | | |
1083 | | CPLStringList |
1084 | | ZarrV3Array::GetChunkIndicesFromFilename(const char *pszFilename) const |
1085 | 0 | { |
1086 | 0 | if (!m_bV2ChunkKeyEncoding) |
1087 | 0 | { |
1088 | 0 | if (pszFilename[0] != 'c') |
1089 | 0 | return CPLStringList(); |
1090 | 0 | if (m_osDimSeparator == "/") |
1091 | 0 | { |
1092 | 0 | if (pszFilename[1] != '/' && pszFilename[1] != '\\') |
1093 | 0 | return CPLStringList(); |
1094 | 0 | } |
1095 | 0 | else if (pszFilename[1] != m_osDimSeparator[0]) |
1096 | 0 | { |
1097 | 0 | return CPLStringList(); |
1098 | 0 | } |
1099 | 0 | } |
1100 | 0 | return CPLStringList( |
1101 | 0 | CSLTokenizeString2(pszFilename + (m_bV2ChunkKeyEncoding ? 0 : 2), |
1102 | 0 | m_osDimSeparator.c_str(), 0)); |
1103 | 0 | } |
1104 | | |
1105 | | /************************************************************************/ |
1106 | | /* ParseDtypeV3() */ |
1107 | | /************************************************************************/ |
1108 | | |
1109 | | static GDALExtendedDataType ParseDtypeV3(const CPLJSONObject &obj, |
1110 | | std::vector<DtypeElt> &elts) |
1111 | 0 | { |
1112 | 0 | do |
1113 | 0 | { |
1114 | 0 | if (obj.GetType() == CPLJSONObject::Type::String) |
1115 | 0 | { |
1116 | 0 | const auto str = obj.ToString(); |
1117 | 0 | DtypeElt elt; |
1118 | 0 | GDALDataType eDT = GDT_Unknown; |
1119 | |
|
1120 | 0 | if (str == "bool") // boolean |
1121 | 0 | { |
1122 | 0 | elt.nativeType = DtypeElt::NativeType::BOOLEAN; |
1123 | 0 | eDT = GDT_UInt8; |
1124 | 0 | } |
1125 | 0 | else if (str == "int8") |
1126 | 0 | { |
1127 | 0 | elt.nativeType = DtypeElt::NativeType::SIGNED_INT; |
1128 | 0 | eDT = GDT_Int8; |
1129 | 0 | } |
1130 | 0 | else if (str == "uint8") |
1131 | 0 | { |
1132 | 0 | elt.nativeType = DtypeElt::NativeType::UNSIGNED_INT; |
1133 | 0 | eDT = GDT_UInt8; |
1134 | 0 | } |
1135 | 0 | else if (str == "int16") |
1136 | 0 | { |
1137 | 0 | elt.nativeType = DtypeElt::NativeType::SIGNED_INT; |
1138 | 0 | eDT = GDT_Int16; |
1139 | 0 | } |
1140 | 0 | else if (str == "uint16") |
1141 | 0 | { |
1142 | 0 | elt.nativeType = DtypeElt::NativeType::UNSIGNED_INT; |
1143 | 0 | eDT = GDT_UInt16; |
1144 | 0 | } |
1145 | 0 | else if (str == "int32") |
1146 | 0 | { |
1147 | 0 | elt.nativeType = DtypeElt::NativeType::SIGNED_INT; |
1148 | 0 | eDT = GDT_Int32; |
1149 | 0 | } |
1150 | 0 | else if (str == "uint32") |
1151 | 0 | { |
1152 | 0 | elt.nativeType = DtypeElt::NativeType::UNSIGNED_INT; |
1153 | 0 | eDT = GDT_UInt32; |
1154 | 0 | } |
1155 | 0 | else if (str == "int64") |
1156 | 0 | { |
1157 | 0 | elt.nativeType = DtypeElt::NativeType::SIGNED_INT; |
1158 | 0 | eDT = GDT_Int64; |
1159 | 0 | } |
1160 | 0 | else if (str == "uint64") |
1161 | 0 | { |
1162 | 0 | elt.nativeType = DtypeElt::NativeType::UNSIGNED_INT; |
1163 | 0 | eDT = GDT_UInt64; |
1164 | 0 | } |
1165 | 0 | else if (str == "float16") |
1166 | 0 | { |
1167 | 0 | elt.nativeType = DtypeElt::NativeType::IEEEFP; |
1168 | 0 | eDT = GDT_Float16; |
1169 | 0 | } |
1170 | 0 | else if (str == "float32") |
1171 | 0 | { |
1172 | 0 | elt.nativeType = DtypeElt::NativeType::IEEEFP; |
1173 | 0 | eDT = GDT_Float32; |
1174 | 0 | } |
1175 | 0 | else if (str == "float64") |
1176 | 0 | { |
1177 | 0 | elt.nativeType = DtypeElt::NativeType::IEEEFP; |
1178 | 0 | eDT = GDT_Float64; |
1179 | 0 | } |
1180 | 0 | else if (str == "complex64") |
1181 | 0 | { |
1182 | 0 | elt.nativeType = DtypeElt::NativeType::COMPLEX_IEEEFP; |
1183 | 0 | eDT = GDT_CFloat32; |
1184 | 0 | } |
1185 | 0 | else if (str == "complex128") |
1186 | 0 | { |
1187 | 0 | elt.nativeType = DtypeElt::NativeType::COMPLEX_IEEEFP; |
1188 | 0 | eDT = GDT_CFloat64; |
1189 | 0 | } |
1190 | 0 | else |
1191 | 0 | break; |
1192 | | |
1193 | 0 | elt.gdalType = GDALExtendedDataType::Create(eDT); |
1194 | 0 | elt.gdalSize = elt.gdalType.GetSize(); |
1195 | 0 | if (!elt.gdalTypeIsApproxOfNative) |
1196 | 0 | elt.nativeSize = elt.gdalSize; |
1197 | |
|
1198 | 0 | if (elt.nativeSize > 1) |
1199 | 0 | { |
1200 | 0 | elt.needByteSwapping = (CPL_IS_LSB == 0); |
1201 | 0 | } |
1202 | |
|
1203 | 0 | elts.emplace_back(elt); |
1204 | 0 | return GDALExtendedDataType::Create(eDT); |
1205 | 0 | } |
1206 | 0 | } while (false); |
1207 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
1208 | 0 | "Invalid or unsupported format for data_type: %s", |
1209 | 0 | obj.ToString().c_str()); |
1210 | 0 | return GDALExtendedDataType::Create(GDT_Unknown); |
1211 | 0 | } |
1212 | | |
1213 | | /************************************************************************/ |
1214 | | /* ParseNoDataStringAsDouble() */ |
1215 | | /************************************************************************/ |
1216 | | |
1217 | | static double ParseNoDataStringAsDouble(const std::string &osVal, bool &bOK) |
1218 | 0 | { |
1219 | 0 | double dfNoDataValue = std::numeric_limits<double>::quiet_NaN(); |
1220 | 0 | if (osVal == "NaN") |
1221 | 0 | { |
1222 | | // initialized above |
1223 | 0 | } |
1224 | 0 | else if (osVal == "Infinity" || osVal == "+Infinity") |
1225 | 0 | { |
1226 | 0 | dfNoDataValue = std::numeric_limits<double>::infinity(); |
1227 | 0 | } |
1228 | 0 | else if (osVal == "-Infinity") |
1229 | 0 | { |
1230 | 0 | dfNoDataValue = -std::numeric_limits<double>::infinity(); |
1231 | 0 | } |
1232 | 0 | else |
1233 | 0 | { |
1234 | 0 | bOK = false; |
1235 | 0 | } |
1236 | 0 | return dfNoDataValue; |
1237 | 0 | } |
1238 | | |
1239 | | /************************************************************************/ |
1240 | | /* ParseNoDataComponent() */ |
1241 | | /************************************************************************/ |
1242 | | |
1243 | | template <typename T, typename Tint> |
1244 | | static T ParseNoDataComponent(const CPLJSONObject &oObj, bool &bOK) |
1245 | 0 | { |
1246 | 0 | if (oObj.GetType() == CPLJSONObject::Type::Integer || |
1247 | 0 | oObj.GetType() == CPLJSONObject::Type::Long || |
1248 | 0 | oObj.GetType() == CPLJSONObject::Type::Double) |
1249 | 0 | { |
1250 | 0 | return static_cast<T>(oObj.ToDouble()); |
1251 | 0 | } |
1252 | 0 | else if (oObj.GetType() == CPLJSONObject::Type::String) |
1253 | 0 | { |
1254 | 0 | const auto osVal = oObj.ToString(); |
1255 | 0 | if (STARTS_WITH(osVal.c_str(), "0x")) |
1256 | 0 | { |
1257 | 0 | if (osVal.size() > 2 + 2 * sizeof(T)) |
1258 | 0 | { |
1259 | 0 | bOK = false; |
1260 | 0 | return 0; |
1261 | 0 | } |
1262 | 0 | Tint nVal = static_cast<Tint>( |
1263 | 0 | std::strtoull(osVal.c_str() + 2, nullptr, 16)); |
1264 | 0 | T fVal; |
1265 | 0 | static_assert(sizeof(nVal) == sizeof(fVal), |
1266 | 0 | "sizeof(nVal) == sizeof(dfVal)"); |
1267 | 0 | memcpy(&fVal, &nVal, sizeof(nVal)); |
1268 | 0 | return fVal; |
1269 | 0 | } |
1270 | 0 | else |
1271 | 0 | { |
1272 | 0 | return static_cast<T>(ParseNoDataStringAsDouble(osVal, bOK)); |
1273 | 0 | } |
1274 | 0 | } |
1275 | 0 | else |
1276 | 0 | { |
1277 | 0 | bOK = false; |
1278 | 0 | return 0; |
1279 | 0 | } |
1280 | 0 | } Unexecuted instantiation: zarr_v3_array.cpp:double ParseNoDataComponent<double, unsigned long>(CPLJSONObject const&, bool&) Unexecuted instantiation: zarr_v3_array.cpp:float ParseNoDataComponent<float, unsigned int>(CPLJSONObject const&, bool&) |
1281 | | |
1282 | | /************************************************************************/ |
1283 | | /* ZarrV3Group::LoadArray() */ |
1284 | | /************************************************************************/ |
1285 | | |
1286 | | std::shared_ptr<ZarrArray> |
1287 | | ZarrV3Group::LoadArray(const std::string &osArrayName, |
1288 | | const std::string &osZarrayFilename, |
1289 | | const CPLJSONObject &oRoot) const |
1290 | 0 | { |
1291 | | // Add osZarrayFilename to m_poSharedResource during the scope |
1292 | | // of this function call. |
1293 | 0 | ZarrSharedResource::SetFilenameAdder filenameAdder(m_poSharedResource, |
1294 | 0 | osZarrayFilename); |
1295 | 0 | if (!filenameAdder.ok()) |
1296 | 0 | return nullptr; |
1297 | | |
1298 | | // Warn about unknown members (the spec suggests to error out, but let be |
1299 | | // a bit more lenient) |
1300 | 0 | for (const auto &oNode : oRoot.GetChildren()) |
1301 | 0 | { |
1302 | 0 | const auto osName = oNode.GetName(); |
1303 | 0 | if (osName != "zarr_format" && osName != "node_type" && |
1304 | 0 | osName != "shape" && osName != "chunk_grid" && |
1305 | 0 | osName != "data_type" && osName != "chunk_key_encoding" && |
1306 | 0 | osName != "fill_value" && |
1307 | | // Below are optional |
1308 | 0 | osName != "dimension_names" && osName != "codecs" && |
1309 | 0 | osName != "storage_transformers" && osName != "attributes") |
1310 | 0 | { |
1311 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
1312 | 0 | "%s array definition contains a unknown member (%s). " |
1313 | 0 | "Interpretation of the array might be wrong.", |
1314 | 0 | osZarrayFilename.c_str(), osName.c_str()); |
1315 | 0 | } |
1316 | 0 | } |
1317 | |
|
1318 | 0 | const auto oStorageTransformers = oRoot["storage_transformers"].ToArray(); |
1319 | 0 | if (oStorageTransformers.Size() > 0) |
1320 | 0 | { |
1321 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
1322 | 0 | "storage_transformers are not supported."); |
1323 | 0 | return nullptr; |
1324 | 0 | } |
1325 | | |
1326 | 0 | const auto oShape = oRoot["shape"].ToArray(); |
1327 | 0 | if (!oShape.IsValid()) |
1328 | 0 | { |
1329 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "shape missing or not an array"); |
1330 | 0 | return nullptr; |
1331 | 0 | } |
1332 | | |
1333 | | // Parse chunk_grid |
1334 | 0 | const auto oChunkGrid = oRoot["chunk_grid"]; |
1335 | 0 | if (oChunkGrid.GetType() != CPLJSONObject::Type::Object) |
1336 | 0 | { |
1337 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
1338 | 0 | "chunk_grid missing or not an object"); |
1339 | 0 | return nullptr; |
1340 | 0 | } |
1341 | | |
1342 | 0 | const auto oChunkGridName = oChunkGrid["name"]; |
1343 | 0 | if (oChunkGridName.ToString() != "regular") |
1344 | 0 | { |
1345 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
1346 | 0 | "Only chunk_grid.name = regular supported"); |
1347 | 0 | return nullptr; |
1348 | 0 | } |
1349 | | |
1350 | 0 | const auto oChunks = oChunkGrid["configuration"]["chunk_shape"].ToArray(); |
1351 | 0 | if (!oChunks.IsValid()) |
1352 | 0 | { |
1353 | 0 | CPLError( |
1354 | 0 | CE_Failure, CPLE_AppDefined, |
1355 | 0 | "chunk_grid.configuration.chunk_shape missing or not an array"); |
1356 | 0 | return nullptr; |
1357 | 0 | } |
1358 | | |
1359 | 0 | if (oShape.Size() != oChunks.Size()) |
1360 | 0 | { |
1361 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
1362 | 0 | "shape and chunks arrays are of different size"); |
1363 | 0 | return nullptr; |
1364 | 0 | } |
1365 | | |
1366 | | // Parse chunk_key_encoding |
1367 | 0 | const auto oChunkKeyEncoding = oRoot["chunk_key_encoding"]; |
1368 | 0 | if (oChunkKeyEncoding.GetType() != CPLJSONObject::Type::Object) |
1369 | 0 | { |
1370 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
1371 | 0 | "chunk_key_encoding missing or not an object"); |
1372 | 0 | return nullptr; |
1373 | 0 | } |
1374 | | |
1375 | 0 | std::string osDimSeparator; |
1376 | 0 | bool bV2ChunkKeyEncoding = false; |
1377 | 0 | const auto oChunkKeyEncodingName = oChunkKeyEncoding["name"]; |
1378 | 0 | if (oChunkKeyEncodingName.ToString() == "default") |
1379 | 0 | { |
1380 | 0 | osDimSeparator = "/"; |
1381 | 0 | } |
1382 | 0 | else if (oChunkKeyEncodingName.ToString() == "v2") |
1383 | 0 | { |
1384 | 0 | osDimSeparator = "."; |
1385 | 0 | bV2ChunkKeyEncoding = true; |
1386 | 0 | } |
1387 | 0 | else |
1388 | 0 | { |
1389 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
1390 | 0 | "Unsupported chunk_key_encoding.name"); |
1391 | 0 | return nullptr; |
1392 | 0 | } |
1393 | | |
1394 | 0 | { |
1395 | 0 | auto oConfiguration = oChunkKeyEncoding["configuration"]; |
1396 | 0 | if (oConfiguration.GetType() == CPLJSONObject::Type::Object) |
1397 | 0 | { |
1398 | 0 | auto oSeparator = oConfiguration["separator"]; |
1399 | 0 | if (oSeparator.IsValid()) |
1400 | 0 | { |
1401 | 0 | osDimSeparator = oSeparator.ToString(); |
1402 | 0 | if (osDimSeparator != "/" && osDimSeparator != ".") |
1403 | 0 | { |
1404 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
1405 | 0 | "Separator can only be '/' or '.'"); |
1406 | 0 | return nullptr; |
1407 | 0 | } |
1408 | 0 | } |
1409 | 0 | } |
1410 | 0 | } |
1411 | | |
1412 | 0 | CPLJSONObject oAttributes = oRoot["attributes"]; |
1413 | | |
1414 | | // Deep-clone of oAttributes |
1415 | 0 | if (oAttributes.IsValid()) |
1416 | 0 | { |
1417 | 0 | oAttributes = oAttributes.Clone(); |
1418 | 0 | } |
1419 | |
|
1420 | 0 | std::vector<std::shared_ptr<GDALDimension>> aoDims; |
1421 | 0 | for (int i = 0; i < oShape.Size(); ++i) |
1422 | 0 | { |
1423 | 0 | const auto nSize = static_cast<GUInt64>(oShape[i].ToLong()); |
1424 | 0 | if (nSize == 0) |
1425 | 0 | { |
1426 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "Invalid content for shape"); |
1427 | 0 | return nullptr; |
1428 | 0 | } |
1429 | 0 | aoDims.emplace_back(std::make_shared<ZarrDimension>( |
1430 | 0 | m_poSharedResource, |
1431 | 0 | std::dynamic_pointer_cast<ZarrGroupBase>(m_pSelf.lock()), |
1432 | 0 | std::string(), CPLSPrintf("dim%d", i), std::string(), std::string(), |
1433 | 0 | nSize)); |
1434 | 0 | } |
1435 | | |
1436 | | // Deal with dimension_names |
1437 | 0 | const auto dimensionNames = oRoot["dimension_names"]; |
1438 | |
|
1439 | 0 | const auto FindDimension = [this, &aoDims, &osArrayName, &oAttributes]( |
1440 | 0 | const std::string &osDimName, |
1441 | 0 | std::shared_ptr<GDALDimension> &poDim, int i) |
1442 | 0 | { |
1443 | 0 | auto oIter = m_oMapDimensions.find(osDimName); |
1444 | 0 | if (oIter != m_oMapDimensions.end()) |
1445 | 0 | { |
1446 | 0 | if (m_bDimSizeInUpdate || |
1447 | 0 | oIter->second->GetSize() == poDim->GetSize()) |
1448 | 0 | { |
1449 | 0 | poDim = oIter->second; |
1450 | 0 | return true; |
1451 | 0 | } |
1452 | 0 | else |
1453 | 0 | { |
1454 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
1455 | 0 | "Size of _ARRAY_DIMENSIONS[%d] different " |
1456 | 0 | "from the one of shape", |
1457 | 0 | i); |
1458 | 0 | return false; |
1459 | 0 | } |
1460 | 0 | } |
1461 | | |
1462 | | // Try to load the indexing variable. |
1463 | | // Not in m_oMapMDArrays, |
1464 | | // then stat() the indexing variable. |
1465 | 0 | else if (osArrayName != osDimName && |
1466 | 0 | m_oMapMDArrays.find(osDimName) == m_oMapMDArrays.end()) |
1467 | 0 | { |
1468 | 0 | std::string osDirName = m_osDirectoryName; |
1469 | 0 | while (true) |
1470 | 0 | { |
1471 | 0 | const std::string osArrayFilenameDim = CPLFormFilenameSafe( |
1472 | 0 | CPLFormFilenameSafe(osDirName.c_str(), osDimName.c_str(), |
1473 | 0 | nullptr) |
1474 | 0 | .c_str(), |
1475 | 0 | "zarr.json", nullptr); |
1476 | 0 | VSIStatBufL sStat; |
1477 | 0 | if (VSIStatL(osArrayFilenameDim.c_str(), &sStat) == 0) |
1478 | 0 | { |
1479 | 0 | CPLJSONDocument oDoc; |
1480 | 0 | if (oDoc.Load(osArrayFilenameDim)) |
1481 | 0 | { |
1482 | 0 | LoadArray(osDimName, osArrayFilenameDim, |
1483 | 0 | oDoc.GetRoot()); |
1484 | 0 | } |
1485 | 0 | } |
1486 | 0 | else |
1487 | 0 | { |
1488 | | // Recurse to upper level for datasets such as |
1489 | | // /vsis3/hrrrzarr/sfc/20210809/20210809_00z_anl.zarr/0.1_sigma_level/HAIL_max_fcst/0.1_sigma_level/HAIL_max_fcst |
1490 | 0 | std::string osDirNameNew = |
1491 | 0 | CPLGetPathSafe(osDirName.c_str()); |
1492 | 0 | if (!osDirNameNew.empty() && osDirNameNew != osDirName) |
1493 | 0 | { |
1494 | 0 | osDirName = std::move(osDirNameNew); |
1495 | 0 | continue; |
1496 | 0 | } |
1497 | 0 | } |
1498 | 0 | break; |
1499 | 0 | } |
1500 | 0 | } |
1501 | | |
1502 | 0 | oIter = m_oMapDimensions.find(osDimName); |
1503 | | // cppcheck-suppress knownConditionTrueFalse |
1504 | 0 | if (oIter != m_oMapDimensions.end() && |
1505 | 0 | oIter->second->GetSize() == poDim->GetSize()) |
1506 | 0 | { |
1507 | 0 | poDim = oIter->second; |
1508 | 0 | return true; |
1509 | 0 | } |
1510 | | |
1511 | 0 | std::string osType; |
1512 | 0 | std::string osDirection; |
1513 | 0 | if (aoDims.size() == 1 && osArrayName == osDimName) |
1514 | 0 | { |
1515 | 0 | ZarrArray::GetDimensionTypeDirection(oAttributes, osType, |
1516 | 0 | osDirection); |
1517 | 0 | } |
1518 | |
|
1519 | 0 | auto poDimLocal = std::make_shared<ZarrDimension>( |
1520 | 0 | m_poSharedResource, |
1521 | 0 | std::dynamic_pointer_cast<ZarrGroupBase>(m_pSelf.lock()), |
1522 | 0 | GetFullName(), osDimName, osType, osDirection, poDim->GetSize()); |
1523 | 0 | poDimLocal->SetXArrayDimension(); |
1524 | 0 | m_oMapDimensions[osDimName] = poDimLocal; |
1525 | 0 | poDim = poDimLocal; |
1526 | 0 | return true; |
1527 | 0 | }; |
1528 | |
|
1529 | 0 | if (dimensionNames.GetType() == CPLJSONObject::Type::Array) |
1530 | 0 | { |
1531 | 0 | const auto arrayDims = dimensionNames.ToArray(); |
1532 | 0 | if (arrayDims.Size() == oShape.Size()) |
1533 | 0 | { |
1534 | 0 | for (int i = 0; i < oShape.Size(); ++i) |
1535 | 0 | { |
1536 | 0 | if (arrayDims[i].GetType() == CPLJSONObject::Type::String) |
1537 | 0 | { |
1538 | 0 | const auto osDimName = arrayDims[i].ToString(); |
1539 | 0 | FindDimension(osDimName, aoDims[i], i); |
1540 | 0 | } |
1541 | 0 | } |
1542 | 0 | } |
1543 | 0 | else |
1544 | 0 | { |
1545 | 0 | CPLError( |
1546 | 0 | CE_Failure, CPLE_AppDefined, |
1547 | 0 | "Size of dimension_names[] different from the one of shape"); |
1548 | 0 | return nullptr; |
1549 | 0 | } |
1550 | 0 | } |
1551 | 0 | else if (dimensionNames.IsValid()) |
1552 | 0 | { |
1553 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
1554 | 0 | "dimension_names should be an array"); |
1555 | 0 | return nullptr; |
1556 | 0 | } |
1557 | | |
1558 | 0 | auto oDtype = oRoot["data_type"]; |
1559 | 0 | if (!oDtype.IsValid()) |
1560 | 0 | { |
1561 | 0 | CPLError(CE_Failure, CPLE_NotSupported, "data_type missing"); |
1562 | 0 | return nullptr; |
1563 | 0 | } |
1564 | 0 | if (oDtype["fallback"].IsValid()) |
1565 | 0 | oDtype = oDtype["fallback"]; |
1566 | 0 | std::vector<DtypeElt> aoDtypeElts; |
1567 | 0 | const auto oType = ParseDtypeV3(oDtype, aoDtypeElts); |
1568 | 0 | if (oType.GetClass() == GEDTC_NUMERIC && |
1569 | 0 | oType.GetNumericDataType() == GDT_Unknown) |
1570 | 0 | return nullptr; |
1571 | | |
1572 | 0 | std::vector<GUInt64> anOuterBlockSize; |
1573 | 0 | if (!ZarrArray::ParseChunkSize(oChunks, oType, anOuterBlockSize)) |
1574 | 0 | return nullptr; |
1575 | | |
1576 | 0 | std::vector<GByte> abyNoData; |
1577 | |
|
1578 | 0 | auto oFillValue = oRoot["fill_value"]; |
1579 | 0 | auto eFillValueType = oFillValue.GetType(); |
1580 | |
|
1581 | 0 | if (!oFillValue.IsValid()) |
1582 | 0 | { |
1583 | 0 | CPLError(CE_Warning, CPLE_AppDefined, "Missing fill_value is invalid"); |
1584 | 0 | } |
1585 | 0 | else if (eFillValueType == CPLJSONObject::Type::Null) |
1586 | 0 | { |
1587 | 0 | CPLError(CE_Warning, CPLE_AppDefined, "fill_value = null is invalid"); |
1588 | 0 | } |
1589 | 0 | else if (GDALDataTypeIsComplex(oType.GetNumericDataType()) && |
1590 | 0 | eFillValueType != CPLJSONObject::Type::Array) |
1591 | 0 | { |
1592 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "Invalid fill_value"); |
1593 | 0 | return nullptr; |
1594 | 0 | } |
1595 | 0 | else if (eFillValueType == CPLJSONObject::Type::String) |
1596 | 0 | { |
1597 | 0 | const auto osFillValue = oFillValue.ToString(); |
1598 | 0 | if (STARTS_WITH(osFillValue.c_str(), "0x")) |
1599 | 0 | { |
1600 | 0 | if (osFillValue.size() > 2 + 2 * oType.GetSize()) |
1601 | 0 | { |
1602 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "Invalid fill_value"); |
1603 | 0 | return nullptr; |
1604 | 0 | } |
1605 | 0 | uint64_t nVal = static_cast<uint64_t>( |
1606 | 0 | std::strtoull(osFillValue.c_str() + 2, nullptr, 16)); |
1607 | 0 | if (oType.GetSize() == 4) |
1608 | 0 | { |
1609 | 0 | abyNoData.resize(oType.GetSize()); |
1610 | 0 | uint32_t nTmp = static_cast<uint32_t>(nVal); |
1611 | 0 | memcpy(&abyNoData[0], &nTmp, sizeof(nTmp)); |
1612 | 0 | } |
1613 | 0 | else if (oType.GetSize() == 8) |
1614 | 0 | { |
1615 | 0 | abyNoData.resize(oType.GetSize()); |
1616 | 0 | memcpy(&abyNoData[0], &nVal, sizeof(nVal)); |
1617 | 0 | } |
1618 | 0 | else |
1619 | 0 | { |
1620 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
1621 | 0 | "Hexadecimal representation of fill_value no " |
1622 | 0 | "supported for this data type"); |
1623 | 0 | return nullptr; |
1624 | 0 | } |
1625 | 0 | } |
1626 | 0 | else if (STARTS_WITH(osFillValue.c_str(), "0b")) |
1627 | 0 | { |
1628 | 0 | if (osFillValue.size() > 2 + 8 * oType.GetSize()) |
1629 | 0 | { |
1630 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "Invalid fill_value"); |
1631 | 0 | return nullptr; |
1632 | 0 | } |
1633 | 0 | uint64_t nVal = static_cast<uint64_t>( |
1634 | 0 | std::strtoull(osFillValue.c_str() + 2, nullptr, 2)); |
1635 | 0 | if (oType.GetSize() == 4) |
1636 | 0 | { |
1637 | 0 | abyNoData.resize(oType.GetSize()); |
1638 | 0 | uint32_t nTmp = static_cast<uint32_t>(nVal); |
1639 | 0 | memcpy(&abyNoData[0], &nTmp, sizeof(nTmp)); |
1640 | 0 | } |
1641 | 0 | else if (oType.GetSize() == 8) |
1642 | 0 | { |
1643 | 0 | abyNoData.resize(oType.GetSize()); |
1644 | 0 | memcpy(&abyNoData[0], &nVal, sizeof(nVal)); |
1645 | 0 | } |
1646 | 0 | else |
1647 | 0 | { |
1648 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
1649 | 0 | "Binary representation of fill_value no supported for " |
1650 | 0 | "this data type"); |
1651 | 0 | return nullptr; |
1652 | 0 | } |
1653 | 0 | } |
1654 | 0 | else |
1655 | 0 | { |
1656 | 0 | bool bOK = true; |
1657 | 0 | double dfNoDataValue = ParseNoDataStringAsDouble(osFillValue, bOK); |
1658 | 0 | if (!bOK) |
1659 | 0 | { |
1660 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "Invalid fill_value"); |
1661 | 0 | return nullptr; |
1662 | 0 | } |
1663 | 0 | else if (oType.GetNumericDataType() == GDT_Float16) |
1664 | 0 | { |
1665 | 0 | const GFloat16 hfNoDataValue = |
1666 | 0 | static_cast<GFloat16>(dfNoDataValue); |
1667 | 0 | abyNoData.resize(sizeof(hfNoDataValue)); |
1668 | 0 | memcpy(&abyNoData[0], &hfNoDataValue, sizeof(hfNoDataValue)); |
1669 | 0 | } |
1670 | 0 | else if (oType.GetNumericDataType() == GDT_Float32) |
1671 | 0 | { |
1672 | 0 | const float fNoDataValue = static_cast<float>(dfNoDataValue); |
1673 | 0 | abyNoData.resize(sizeof(fNoDataValue)); |
1674 | 0 | memcpy(&abyNoData[0], &fNoDataValue, sizeof(fNoDataValue)); |
1675 | 0 | } |
1676 | 0 | else if (oType.GetNumericDataType() == GDT_Float64) |
1677 | 0 | { |
1678 | 0 | abyNoData.resize(sizeof(dfNoDataValue)); |
1679 | 0 | memcpy(&abyNoData[0], &dfNoDataValue, sizeof(dfNoDataValue)); |
1680 | 0 | } |
1681 | 0 | else |
1682 | 0 | { |
1683 | 0 | CPLError(CE_Failure, CPLE_AppDefined, |
1684 | 0 | "Invalid fill_value for this data type"); |
1685 | 0 | return nullptr; |
1686 | 0 | } |
1687 | 0 | } |
1688 | 0 | } |
1689 | 0 | else if (eFillValueType == CPLJSONObject::Type::Boolean || |
1690 | 0 | eFillValueType == CPLJSONObject::Type::Integer || |
1691 | 0 | eFillValueType == CPLJSONObject::Type::Long || |
1692 | 0 | eFillValueType == CPLJSONObject::Type::Double) |
1693 | 0 | { |
1694 | 0 | const double dfNoDataValue = oFillValue.ToDouble(); |
1695 | 0 | if (oType.GetNumericDataType() == GDT_Int64) |
1696 | 0 | { |
1697 | 0 | const int64_t nNoDataValue = |
1698 | 0 | static_cast<int64_t>(oFillValue.ToLong()); |
1699 | 0 | abyNoData.resize(oType.GetSize()); |
1700 | 0 | GDALCopyWords(&nNoDataValue, GDT_Int64, 0, &abyNoData[0], |
1701 | 0 | oType.GetNumericDataType(), 0, 1); |
1702 | 0 | } |
1703 | 0 | else if (oType.GetNumericDataType() == GDT_UInt64 && |
1704 | | /* we can't really deal with nodata value between */ |
1705 | | /* int64::max and uint64::max due to json-c limitations */ |
1706 | 0 | dfNoDataValue >= 0) |
1707 | 0 | { |
1708 | 0 | const int64_t nNoDataValue = |
1709 | 0 | static_cast<int64_t>(oFillValue.ToLong()); |
1710 | 0 | abyNoData.resize(oType.GetSize()); |
1711 | 0 | GDALCopyWords(&nNoDataValue, GDT_Int64, 0, &abyNoData[0], |
1712 | 0 | oType.GetNumericDataType(), 0, 1); |
1713 | 0 | } |
1714 | 0 | else |
1715 | 0 | { |
1716 | 0 | abyNoData.resize(oType.GetSize()); |
1717 | 0 | GDALCopyWords(&dfNoDataValue, GDT_Float64, 0, &abyNoData[0], |
1718 | 0 | oType.GetNumericDataType(), 0, 1); |
1719 | 0 | } |
1720 | 0 | } |
1721 | 0 | else if (eFillValueType == CPLJSONObject::Type::Array) |
1722 | 0 | { |
1723 | 0 | const auto oFillValueArray = oFillValue.ToArray(); |
1724 | 0 | if (oFillValueArray.Size() == 2 && |
1725 | 0 | GDALDataTypeIsComplex(oType.GetNumericDataType())) |
1726 | 0 | { |
1727 | 0 | if (oType.GetNumericDataType() == GDT_CFloat64) |
1728 | 0 | { |
1729 | 0 | bool bOK = true; |
1730 | 0 | const double adfNoDataValue[2] = { |
1731 | 0 | ParseNoDataComponent<double, uint64_t>(oFillValueArray[0], |
1732 | 0 | bOK), |
1733 | 0 | ParseNoDataComponent<double, uint64_t>(oFillValueArray[1], |
1734 | 0 | bOK), |
1735 | 0 | }; |
1736 | 0 | if (!bOK) |
1737 | 0 | { |
1738 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "Invalid fill_value"); |
1739 | 0 | return nullptr; |
1740 | 0 | } |
1741 | 0 | abyNoData.resize(oType.GetSize()); |
1742 | 0 | CPLAssert(sizeof(adfNoDataValue) == oType.GetSize()); |
1743 | 0 | memcpy(abyNoData.data(), adfNoDataValue, |
1744 | 0 | sizeof(adfNoDataValue)); |
1745 | 0 | } |
1746 | 0 | else |
1747 | 0 | { |
1748 | 0 | CPLAssert(oType.GetNumericDataType() == GDT_CFloat32); |
1749 | 0 | bool bOK = true; |
1750 | 0 | const float afNoDataValue[2] = { |
1751 | 0 | ParseNoDataComponent<float, uint32_t>(oFillValueArray[0], |
1752 | 0 | bOK), |
1753 | 0 | ParseNoDataComponent<float, uint32_t>(oFillValueArray[1], |
1754 | 0 | bOK), |
1755 | 0 | }; |
1756 | 0 | if (!bOK) |
1757 | 0 | { |
1758 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "Invalid fill_value"); |
1759 | 0 | return nullptr; |
1760 | 0 | } |
1761 | 0 | abyNoData.resize(oType.GetSize()); |
1762 | 0 | CPLAssert(sizeof(afNoDataValue) == oType.GetSize()); |
1763 | 0 | memcpy(abyNoData.data(), afNoDataValue, sizeof(afNoDataValue)); |
1764 | 0 | } |
1765 | 0 | } |
1766 | 0 | else |
1767 | 0 | { |
1768 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "Invalid fill_value"); |
1769 | 0 | return nullptr; |
1770 | 0 | } |
1771 | 0 | } |
1772 | 0 | else |
1773 | 0 | { |
1774 | 0 | CPLError(CE_Failure, CPLE_AppDefined, "Invalid fill_value"); |
1775 | 0 | return nullptr; |
1776 | 0 | } |
1777 | | |
1778 | 0 | const auto oCodecs = oRoot["codecs"].ToArray(); |
1779 | 0 | std::unique_ptr<ZarrV3CodecSequence> poCodecs; |
1780 | 0 | std::vector<GUInt64> anInnerBlockSize = anOuterBlockSize; |
1781 | 0 | if (oCodecs.Size() > 0) |
1782 | 0 | { |
1783 | 0 | poCodecs = ZarrV3Array::SetupCodecs(oCodecs, anOuterBlockSize, |
1784 | 0 | anInnerBlockSize, |
1785 | 0 | aoDtypeElts.back(), abyNoData); |
1786 | 0 | if (!poCodecs) |
1787 | 0 | { |
1788 | 0 | return nullptr; |
1789 | 0 | } |
1790 | 0 | } |
1791 | | |
1792 | 0 | auto poArray = ZarrV3Array::Create(m_poSharedResource, Self(), osArrayName, |
1793 | 0 | aoDims, oType, aoDtypeElts, |
1794 | 0 | anOuterBlockSize, anInnerBlockSize); |
1795 | 0 | if (!poArray) |
1796 | 0 | return nullptr; |
1797 | 0 | poArray->SetUpdatable(m_bUpdatable); // must be set before SetAttributes() |
1798 | 0 | poArray->SetFilename(osZarrayFilename); |
1799 | 0 | poArray->SetIsV2ChunkKeyEncoding(bV2ChunkKeyEncoding); |
1800 | 0 | poArray->SetDimSeparator(osDimSeparator); |
1801 | 0 | if (!abyNoData.empty()) |
1802 | 0 | { |
1803 | 0 | poArray->RegisterNoDataValue(abyNoData.data()); |
1804 | 0 | } |
1805 | 0 | poArray->SetAttributes(Self(), oAttributes); |
1806 | 0 | poArray->SetDtype(oDtype); |
1807 | 0 | if (oCodecs.Size() > 0 && |
1808 | 0 | oCodecs[oCodecs.Size() - 1].GetString("name") != "bytes") |
1809 | 0 | { |
1810 | 0 | poArray->SetStructuralInfo( |
1811 | 0 | "COMPRESSOR", oCodecs[oCodecs.Size() - 1].ToString().c_str()); |
1812 | 0 | } |
1813 | 0 | if (poCodecs) |
1814 | 0 | poArray->SetCodecs(oCodecs, std::move(poCodecs)); |
1815 | 0 | RegisterArray(poArray); |
1816 | | |
1817 | | // If this is an indexing variable, attach it to the dimension. |
1818 | 0 | if (aoDims.size() == 1 && aoDims[0]->GetName() == poArray->GetName()) |
1819 | 0 | { |
1820 | 0 | auto oIter = m_oMapDimensions.find(poArray->GetName()); |
1821 | 0 | if (oIter != m_oMapDimensions.end()) |
1822 | 0 | { |
1823 | 0 | oIter->second->SetIndexingVariable(poArray); |
1824 | 0 | } |
1825 | 0 | } |
1826 | |
|
1827 | 0 | if (CPLTestBool(m_poSharedResource->GetOpenOptions().FetchNameValueDef( |
1828 | 0 | "CACHE_TILE_PRESENCE", "NO"))) |
1829 | 0 | { |
1830 | 0 | poArray->BlockCachePresence(); |
1831 | 0 | } |
1832 | |
|
1833 | 0 | return poArray; |
1834 | 0 | } |
1835 | | |
1836 | | /************************************************************************/ |
1837 | | /* ZarrV3Array::GetRawBlockInfoInfo() */ |
1838 | | /************************************************************************/ |
1839 | | |
1840 | | CPLStringList ZarrV3Array::GetRawBlockInfoInfo() const |
1841 | 0 | { |
1842 | 0 | CPLStringList aosInfo(m_aosStructuralInfo); |
1843 | 0 | if (m_oType.GetSize() > 1) |
1844 | 0 | { |
1845 | | // By default, assume that the ENDIANNESS is the native one. |
1846 | | // Otherwise there will be a ZarrV3CodecBytes instance. |
1847 | | if constexpr (CPL_IS_LSB) |
1848 | 0 | aosInfo.SetNameValue("ENDIANNESS", "LITTLE"); |
1849 | | else |
1850 | | aosInfo.SetNameValue("ENDIANNESS", "BIG"); |
1851 | 0 | } |
1852 | |
|
1853 | 0 | if (m_poCodecs) |
1854 | 0 | { |
1855 | 0 | bool bHasOtherCodec = false; |
1856 | 0 | for (const auto &poCodec : m_poCodecs->GetCodecs()) |
1857 | 0 | { |
1858 | 0 | if (poCodec->GetName() == ZarrV3CodecBytes::NAME && |
1859 | 0 | m_oType.GetSize() > 1) |
1860 | 0 | { |
1861 | 0 | auto poBytesCodec = |
1862 | 0 | dynamic_cast<const ZarrV3CodecBytes *>(poCodec.get()); |
1863 | 0 | if (poBytesCodec) |
1864 | 0 | { |
1865 | 0 | if (poBytesCodec->IsLittle()) |
1866 | 0 | aosInfo.SetNameValue("ENDIANNESS", "LITTLE"); |
1867 | 0 | else |
1868 | 0 | aosInfo.SetNameValue("ENDIANNESS", "BIG"); |
1869 | 0 | } |
1870 | 0 | } |
1871 | 0 | else if (poCodec->GetName() == ZarrV3CodecTranspose::NAME && |
1872 | 0 | m_aoDims.size() > 1) |
1873 | 0 | { |
1874 | 0 | auto poTransposeCodec = |
1875 | 0 | dynamic_cast<const ZarrV3CodecTranspose *>(poCodec.get()); |
1876 | 0 | if (poTransposeCodec && !poTransposeCodec->IsNoOp()) |
1877 | 0 | { |
1878 | 0 | const auto &anOrder = poTransposeCodec->GetOrder(); |
1879 | 0 | const int nDims = static_cast<int>(anOrder.size()); |
1880 | 0 | std::string osOrder("["); |
1881 | 0 | for (int i = 0; i < nDims; ++i) |
1882 | 0 | { |
1883 | 0 | if (i > 0) |
1884 | 0 | osOrder += ','; |
1885 | 0 | osOrder += std::to_string(anOrder[i]); |
1886 | 0 | } |
1887 | 0 | osOrder += ']'; |
1888 | 0 | aosInfo.SetNameValue("TRANSPOSE_ORDER", osOrder.c_str()); |
1889 | 0 | } |
1890 | 0 | } |
1891 | 0 | else if (poCodec->GetName() != ZarrV3CodecGZip::NAME && |
1892 | 0 | poCodec->GetName() != ZarrV3CodecBlosc::NAME && |
1893 | 0 | poCodec->GetName() != ZarrV3CodecZstd::NAME) |
1894 | 0 | { |
1895 | 0 | bHasOtherCodec = true; |
1896 | 0 | } |
1897 | 0 | } |
1898 | 0 | if (bHasOtherCodec) |
1899 | 0 | { |
1900 | 0 | aosInfo.SetNameValue("CODECS", m_oJSONCodecs.ToString().c_str()); |
1901 | 0 | } |
1902 | |
|
1903 | 0 | if (m_poCodecs->SupportsPartialDecoding()) |
1904 | 0 | { |
1905 | 0 | aosInfo.SetNameValue("CHUNK_TYPE", "INNER"); |
1906 | 0 | } |
1907 | 0 | } |
1908 | |
|
1909 | 0 | return aosInfo; |
1910 | 0 | } |
1911 | | |
1912 | | /************************************************************************/ |
1913 | | /* ZarrV3Array::SetupCodecs() */ |
1914 | | /************************************************************************/ |
1915 | | |
1916 | | /* static */ std::unique_ptr<ZarrV3CodecSequence> ZarrV3Array::SetupCodecs( |
1917 | | const CPLJSONArray &oCodecs, const std::vector<GUInt64> &anOuterBlockSize, |
1918 | | std::vector<GUInt64> &anInnerBlockSize, DtypeElt &zarrDataType, |
1919 | | const std::vector<GByte> &abyNoData) |
1920 | | |
1921 | 0 | { |
1922 | | // Byte swapping will be done by the codec chain |
1923 | 0 | zarrDataType.needByteSwapping = false; |
1924 | |
|
1925 | 0 | ZarrArrayMetadata oInputArrayMetadata; |
1926 | 0 | if (!abyNoData.empty() && zarrDataType.gdalTypeIsApproxOfNative) |
1927 | 0 | { |
1928 | | // This cannot happen today with the data types we support, but |
1929 | | // might in the future. In which case we'll have to translate the |
1930 | | // nodata value from its GDAL representation to the native one |
1931 | | // (since that's what zarr_v3_codec_sharding::FillWithNoData() |
1932 | | // expects |
1933 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
1934 | 0 | "Zarr driver issue: gdalTypeIsApproxOfNative is not taken " |
1935 | 0 | "into account by codecs. Nodata will be assumed to be zero by " |
1936 | 0 | "sharding codec"); |
1937 | 0 | } |
1938 | 0 | else |
1939 | 0 | { |
1940 | 0 | oInputArrayMetadata.abyNoData = abyNoData; |
1941 | 0 | } |
1942 | 0 | for (auto &nSize : anOuterBlockSize) |
1943 | 0 | { |
1944 | 0 | oInputArrayMetadata.anBlockSizes.push_back(static_cast<size_t>(nSize)); |
1945 | 0 | } |
1946 | 0 | oInputArrayMetadata.oElt = zarrDataType; |
1947 | 0 | auto poCodecs = std::make_unique<ZarrV3CodecSequence>(oInputArrayMetadata); |
1948 | 0 | ZarrArrayMetadata oOutputArrayMetadata; |
1949 | 0 | if (!poCodecs->InitFromJson(oCodecs, oOutputArrayMetadata)) |
1950 | 0 | { |
1951 | 0 | return nullptr; |
1952 | 0 | } |
1953 | 0 | std::vector<size_t> anOuterBlockSizeSizet; |
1954 | 0 | for (auto nVal : oOutputArrayMetadata.anBlockSizes) |
1955 | 0 | { |
1956 | 0 | anOuterBlockSizeSizet.push_back(static_cast<size_t>(nVal)); |
1957 | 0 | } |
1958 | 0 | anInnerBlockSize.clear(); |
1959 | 0 | for (size_t nVal : poCodecs->GetInnerMostBlockSize(anOuterBlockSizeSizet)) |
1960 | 0 | { |
1961 | 0 | anInnerBlockSize.push_back(nVal); |
1962 | 0 | } |
1963 | 0 | return poCodecs; |
1964 | 0 | } |
1965 | | |
1966 | | /************************************************************************/ |
1967 | | /* ZarrV3Array::SetCodecs() */ |
1968 | | /************************************************************************/ |
1969 | | |
1970 | | void ZarrV3Array::SetCodecs(const CPLJSONArray &oJSONCodecs, |
1971 | | std::unique_ptr<ZarrV3CodecSequence> &&poCodecs) |
1972 | 0 | { |
1973 | 0 | m_oJSONCodecs = oJSONCodecs; |
1974 | 0 | m_poCodecs = std::move(poCodecs); |
1975 | 0 | } |
1976 | | |
1977 | | /************************************************************************/ |
1978 | | /* ZarrV3Array::LoadOverviews() */ |
1979 | | /************************************************************************/ |
1980 | | |
1981 | | void ZarrV3Array::LoadOverviews() const |
1982 | 0 | { |
1983 | 0 | if (m_bOverviewsLoaded) |
1984 | 0 | return; |
1985 | 0 | m_bOverviewsLoaded = true; |
1986 | | |
1987 | | // Cf https://github.com/zarr-conventions/multiscales |
1988 | | // and https://github.com/zarr-conventions/spatial |
1989 | |
|
1990 | 0 | const auto poRG = GetRootGroup(); |
1991 | 0 | if (!poRG) |
1992 | 0 | { |
1993 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
1994 | 0 | "LoadOverviews(): cannot access root group"); |
1995 | 0 | return; |
1996 | 0 | } |
1997 | | |
1998 | 0 | auto poGroup = GetParentGroup(); |
1999 | 0 | if (!poGroup) |
2000 | 0 | { |
2001 | 0 | CPLDebugOnly(ZARR_DEBUG_KEY, |
2002 | 0 | "LoadOverviews(): cannot access parent group"); |
2003 | 0 | return; |
2004 | 0 | } |
2005 | | |
2006 | | // Look for "zarr_conventions" and "multiscales" attributes in our |
2007 | | // immediate parent, or in our grandparent if not found. |
2008 | 0 | auto poAttrZarrConventions = poGroup->GetAttribute("zarr_conventions"); |
2009 | 0 | auto poAttrMultiscales = poGroup->GetAttribute("multiscales"); |
2010 | 0 | if (!poAttrZarrConventions || !poAttrMultiscales) |
2011 | 0 | { |
2012 | 0 | poGroup = poGroup->GetParentGroup(); |
2013 | 0 | if (poGroup) |
2014 | 0 | { |
2015 | 0 | poAttrZarrConventions = poGroup->GetAttribute("zarr_conventions"); |
2016 | 0 | poAttrMultiscales = poGroup->GetAttribute("multiscales"); |
2017 | 0 | } |
2018 | 0 | if (!poAttrZarrConventions || !poAttrMultiscales) |
2019 | 0 | { |
2020 | 0 | return; |
2021 | 0 | } |
2022 | 0 | } |
2023 | | |
2024 | 0 | const char *pszZarrConventions = poAttrZarrConventions->ReadAsString(); |
2025 | 0 | const char *pszMultiscales = poAttrMultiscales->ReadAsString(); |
2026 | 0 | if (!pszZarrConventions || !pszMultiscales) |
2027 | 0 | return; |
2028 | | |
2029 | 0 | CPLJSONDocument oDoc; |
2030 | 0 | if (!oDoc.LoadMemory(pszZarrConventions)) |
2031 | 0 | return; |
2032 | 0 | const auto oZarrConventions = oDoc.GetRoot(); |
2033 | |
|
2034 | 0 | if (!oDoc.LoadMemory(pszMultiscales)) |
2035 | 0 | return; |
2036 | 0 | const auto oMultiscales = oDoc.GetRoot(); |
2037 | |
|
2038 | 0 | if (!oZarrConventions.IsValid() || |
2039 | 0 | oZarrConventions.GetType() != CPLJSONObject::Type::Array || |
2040 | 0 | !oMultiscales.IsValid() || |
2041 | 0 | oMultiscales.GetType() != CPLJSONObject::Type::Object) |
2042 | 0 | { |
2043 | 0 | return; |
2044 | 0 | } |
2045 | | |
2046 | 0 | const auto oZarrConventionsArray = oZarrConventions.ToArray(); |
2047 | 0 | const auto hasMultiscalesUUIDLambda = [](const CPLJSONObject &obj) |
2048 | 0 | { |
2049 | 0 | constexpr const char *MULTISCALES_UUID = |
2050 | 0 | "d35379db-88df-4056-af3a-620245f8e347"; |
2051 | 0 | return obj.GetString("uuid") == MULTISCALES_UUID; |
2052 | 0 | }; |
2053 | 0 | const bool bFoundMultiScalesUUID = |
2054 | 0 | std::find_if(oZarrConventionsArray.begin(), oZarrConventionsArray.end(), |
2055 | 0 | hasMultiscalesUUIDLambda) != oZarrConventionsArray.end(); |
2056 | 0 | if (!bFoundMultiScalesUUID) |
2057 | 0 | return; |
2058 | | |
2059 | 0 | const auto hasSpatialUUIDLambda = [](const CPLJSONObject &obj) |
2060 | 0 | { |
2061 | 0 | constexpr const char *SPATIAL_UUID = |
2062 | 0 | "689b58e2-cf7b-45e0-9fff-9cfc0883d6b4"; |
2063 | 0 | return obj.GetString("uuid") == SPATIAL_UUID; |
2064 | 0 | }; |
2065 | 0 | const bool bFoundSpatialUUID = |
2066 | 0 | std::find_if(oZarrConventionsArray.begin(), oZarrConventionsArray.end(), |
2067 | 0 | hasSpatialUUIDLambda) != oZarrConventionsArray.end(); |
2068 | |
|
2069 | 0 | const auto oLayout = oMultiscales["layout"]; |
2070 | 0 | if (!oLayout.IsValid() && oLayout.GetType() != CPLJSONObject::Type::Array) |
2071 | 0 | { |
2072 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
2073 | 0 | "layout not found in multiscales"); |
2074 | 0 | return; |
2075 | 0 | } |
2076 | | |
2077 | | // is pixel-is-area ? |
2078 | 0 | auto poSpatialRegistration = poGroup->GetAttribute("spatial:registration"); |
2079 | 0 | const char *pszSpatialRegistration = |
2080 | 0 | poSpatialRegistration ? poSpatialRegistration->ReadAsString() : nullptr; |
2081 | 0 | const bool bHasExplicitPixelSpatialRegistration = |
2082 | 0 | bFoundSpatialUUID && pszSpatialRegistration && |
2083 | 0 | strcmp(pszSpatialRegistration, "pixel") == 0; |
2084 | |
|
2085 | 0 | std::vector<std::string> aosSpatialDimensions; |
2086 | 0 | std::set<std::string> oSetSpatialDimensionNames; |
2087 | 0 | auto poSpatialDimensions = poGroup->GetAttribute("spatial:dimensions"); |
2088 | 0 | if (bFoundSpatialUUID && poSpatialDimensions) |
2089 | 0 | { |
2090 | 0 | aosSpatialDimensions = poSpatialDimensions->ReadAsStringArray(); |
2091 | 0 | for (const auto &osDimName : aosSpatialDimensions) |
2092 | 0 | { |
2093 | 0 | oSetSpatialDimensionNames.insert(osDimName); |
2094 | 0 | } |
2095 | 0 | } |
2096 | | |
2097 | | // Multiscales convention: asset/derived_from paths are relative to |
2098 | | // the group holding the convention metadata, not the store root. |
2099 | 0 | const std::string osGroupPrefix = poGroup->GetFullName().back() == '/' |
2100 | 0 | ? poGroup->GetFullName() |
2101 | 0 | : poGroup->GetFullName() + '/'; |
2102 | 0 | const auto resolveAssetPath = |
2103 | 0 | [&osGroupPrefix](const std::string &osRelative) -> std::string |
2104 | 0 | { return osGroupPrefix + osRelative; }; |
2105 | |
|
2106 | 0 | for (const auto &oLayoutItem : oLayout.ToArray()) |
2107 | 0 | { |
2108 | 0 | const std::string osAsset = oLayoutItem.GetString("asset"); |
2109 | 0 | if (osAsset.empty()) |
2110 | 0 | { |
2111 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
2112 | 0 | "multiscales.layout[].asset not found"); |
2113 | 0 | continue; |
2114 | 0 | } |
2115 | | |
2116 | | // Resolve "asset" to a MDArray |
2117 | 0 | std::shared_ptr<GDALGroup> poAssetGroup; |
2118 | 0 | { |
2119 | 0 | CPLErrorStateBackuper oBackuper(CPLQuietErrorHandler); |
2120 | 0 | poAssetGroup = |
2121 | 0 | poRG->OpenGroupFromFullname(resolveAssetPath(osAsset)); |
2122 | 0 | } |
2123 | 0 | std::shared_ptr<GDALMDArray> poAssetArray; |
2124 | 0 | if (poAssetGroup) |
2125 | 0 | { |
2126 | 0 | poAssetArray = poAssetGroup->OpenMDArray(GetName()); |
2127 | 0 | } |
2128 | 0 | else if (osAsset.find('/') == std::string::npos) |
2129 | 0 | { |
2130 | 0 | poAssetArray = poGroup->OpenMDArray(osAsset); |
2131 | 0 | if (!poAssetArray) |
2132 | 0 | { |
2133 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
2134 | 0 | "multiscales.layout[].asset=%s ignored, because it is " |
2135 | 0 | "not a valid group or array name", |
2136 | 0 | osAsset.c_str()); |
2137 | 0 | continue; |
2138 | 0 | } |
2139 | 0 | } |
2140 | 0 | else |
2141 | 0 | { |
2142 | 0 | poAssetArray = |
2143 | 0 | poRG->OpenMDArrayFromFullname(resolveAssetPath(osAsset)); |
2144 | 0 | if (poAssetArray && poAssetArray->GetName() != GetName()) |
2145 | 0 | { |
2146 | 0 | continue; |
2147 | 0 | } |
2148 | 0 | } |
2149 | 0 | if (!poAssetArray) |
2150 | 0 | { |
2151 | 0 | continue; |
2152 | 0 | } |
2153 | 0 | if (poAssetArray->GetDimensionCount() != GetDimensionCount()) |
2154 | 0 | { |
2155 | 0 | CPLError( |
2156 | 0 | CE_Warning, CPLE_AppDefined, |
2157 | 0 | "multiscales.layout[].asset=%s (%s) ignored, because it has " |
2158 | 0 | "not the same dimension count as %s (%s)", |
2159 | 0 | osAsset.c_str(), poAssetArray->GetFullName().c_str(), |
2160 | 0 | GetName().c_str(), GetFullName().c_str()); |
2161 | 0 | continue; |
2162 | 0 | } |
2163 | 0 | if (poAssetArray->GetDataType() != GetDataType()) |
2164 | 0 | { |
2165 | 0 | CPLError( |
2166 | 0 | CE_Warning, CPLE_AppDefined, |
2167 | 0 | "multiscales.layout[].asset=%s (%s) ignored, because it has " |
2168 | 0 | "not the same data type as %s (%s)", |
2169 | 0 | osAsset.c_str(), poAssetArray->GetFullName().c_str(), |
2170 | 0 | GetName().c_str(), GetFullName().c_str()); |
2171 | 0 | continue; |
2172 | 0 | } |
2173 | | |
2174 | 0 | bool bAssetIsDownsampledOfThis = false; |
2175 | 0 | for (size_t iDim = 0; iDim < GetDimensionCount(); ++iDim) |
2176 | 0 | { |
2177 | 0 | if (poAssetArray->GetDimensions()[iDim]->GetSize() < |
2178 | 0 | GetDimensions()[iDim]->GetSize()) |
2179 | 0 | { |
2180 | 0 | bAssetIsDownsampledOfThis = true; |
2181 | 0 | break; |
2182 | 0 | } |
2183 | 0 | } |
2184 | 0 | if (!bAssetIsDownsampledOfThis) |
2185 | 0 | { |
2186 | | // not an error |
2187 | 0 | continue; |
2188 | 0 | } |
2189 | | |
2190 | | // Inspect dimensions of the asset |
2191 | 0 | std::map<std::string, size_t> oMapAssetDimNameToIdx; |
2192 | 0 | const auto &apoAssetDims = poAssetArray->GetDimensions(); |
2193 | 0 | size_t nCountSpatialDimsFoundInAsset = 0; |
2194 | 0 | for (const auto &[idx, poDim] : cpl::enumerate(apoAssetDims)) |
2195 | 0 | { |
2196 | 0 | oMapAssetDimNameToIdx[poDim->GetName()] = idx; |
2197 | 0 | if (cpl::contains(oSetSpatialDimensionNames, poDim->GetName())) |
2198 | 0 | ++nCountSpatialDimsFoundInAsset; |
2199 | 0 | } |
2200 | 0 | const bool bAssetHasAllSpatialDims = |
2201 | 0 | (nCountSpatialDimsFoundInAsset == aosSpatialDimensions.size()); |
2202 | | |
2203 | | // Consistency checks on "derived_from" and "transform" |
2204 | 0 | const auto oDerivedFrom = oLayoutItem["derived_from"]; |
2205 | 0 | const auto oTransform = oLayoutItem["transform"]; |
2206 | 0 | if (oDerivedFrom.IsValid() && oTransform.IsValid() && |
2207 | 0 | oDerivedFrom.GetType() == CPLJSONObject::Type::String && |
2208 | 0 | oTransform.GetType() == CPLJSONObject::Type::Object) |
2209 | 0 | { |
2210 | 0 | const std::string osDerivedFrom = oDerivedFrom.ToString(); |
2211 | | // Resolve "derived_from" to a MDArray |
2212 | 0 | std::shared_ptr<GDALGroup> poDerivedFromGroup; |
2213 | 0 | { |
2214 | 0 | CPLErrorStateBackuper oBackuper(CPLQuietErrorHandler); |
2215 | 0 | poDerivedFromGroup = poRG->OpenGroupFromFullname( |
2216 | 0 | resolveAssetPath(osDerivedFrom)); |
2217 | 0 | } |
2218 | 0 | std::shared_ptr<GDALMDArray> poDerivedFromArray; |
2219 | 0 | if (poDerivedFromGroup) |
2220 | 0 | { |
2221 | 0 | poDerivedFromArray = poDerivedFromGroup->OpenMDArray(GetName()); |
2222 | 0 | } |
2223 | 0 | else if (osDerivedFrom.find('/') == std::string::npos) |
2224 | 0 | { |
2225 | 0 | poDerivedFromArray = poGroup->OpenMDArray(osDerivedFrom); |
2226 | 0 | if (!poDerivedFromArray) |
2227 | 0 | { |
2228 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
2229 | 0 | "multiscales.layout[].asset=%s refers to " |
2230 | 0 | "derived_from=%s which does not exist", |
2231 | 0 | osAsset.c_str(), osDerivedFrom.c_str()); |
2232 | 0 | poDerivedFromArray.reset(); |
2233 | 0 | } |
2234 | 0 | } |
2235 | 0 | else |
2236 | 0 | { |
2237 | 0 | poDerivedFromArray = poRG->OpenMDArrayFromFullname( |
2238 | 0 | resolveAssetPath(osDerivedFrom)); |
2239 | 0 | } |
2240 | 0 | if (poDerivedFromArray && bAssetHasAllSpatialDims) |
2241 | 0 | { |
2242 | 0 | if (poDerivedFromArray->GetDimensionCount() != |
2243 | 0 | GetDimensionCount()) |
2244 | 0 | { |
2245 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
2246 | 0 | "multiscales.layout[].asset=%s refers to " |
2247 | 0 | "derived_from=%s that does not have the expected " |
2248 | 0 | "number of dimensions. Ignoring that asset", |
2249 | 0 | osAsset.c_str(), osDerivedFrom.c_str()); |
2250 | 0 | continue; |
2251 | 0 | } |
2252 | | |
2253 | 0 | const auto oScale = oTransform["scale"]; |
2254 | 0 | if (oScale.GetType() == CPLJSONObject::Type::Array && |
2255 | 0 | bHasExplicitPixelSpatialRegistration) |
2256 | 0 | { |
2257 | 0 | const auto oScaleArray = oScale.ToArray(); |
2258 | 0 | if (oScaleArray.size() != GetDimensionCount()) |
2259 | 0 | { |
2260 | |
|
2261 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
2262 | 0 | "multiscales.layout[].asset=%s has a " |
2263 | 0 | "transform.scale array with an unexpected " |
2264 | 0 | "number of values. Ignoring the asset", |
2265 | 0 | osAsset.c_str()); |
2266 | 0 | continue; |
2267 | 0 | } |
2268 | | |
2269 | 0 | for (size_t iDim = 0; iDim < GetDimensionCount(); ++iDim) |
2270 | 0 | { |
2271 | 0 | const double dfScale = oScaleArray[iDim].ToDouble(); |
2272 | 0 | const double dfExpectedScale = |
2273 | 0 | static_cast<double>( |
2274 | 0 | poDerivedFromArray->GetDimensions()[iDim] |
2275 | 0 | ->GetSize()) / |
2276 | 0 | static_cast<double>( |
2277 | 0 | poAssetArray->GetDimensions()[iDim]->GetSize()); |
2278 | 0 | constexpr double EPSILON = 1e-3; |
2279 | 0 | if (std::fabs(dfScale - dfExpectedScale) > |
2280 | 0 | EPSILON * dfExpectedScale) |
2281 | 0 | { |
2282 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
2283 | 0 | "multiscales.layout[].asset=%s has a " |
2284 | 0 | "transform.scale[%d]=%f value whereas %f " |
2285 | 0 | "was expected. " |
2286 | 0 | "Assuming that later value as the scale.", |
2287 | 0 | osAsset.c_str(), static_cast<int>(iDim), |
2288 | 0 | dfScale, dfExpectedScale); |
2289 | 0 | } |
2290 | 0 | } |
2291 | 0 | } |
2292 | | |
2293 | 0 | const auto oTranslation = oTransform["translation"]; |
2294 | 0 | if (oTranslation.GetType() == CPLJSONObject::Type::Array && |
2295 | 0 | bHasExplicitPixelSpatialRegistration) |
2296 | 0 | { |
2297 | 0 | const auto oTranslationArray = oTranslation.ToArray(); |
2298 | 0 | if (oTranslationArray.size() != GetDimensionCount()) |
2299 | 0 | { |
2300 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
2301 | 0 | "multiscales.layout[].asset=%s has a " |
2302 | 0 | "transform.translation array with an " |
2303 | 0 | "unexpected number of values. " |
2304 | 0 | "Ignoring the asset", |
2305 | 0 | osAsset.c_str()); |
2306 | 0 | continue; |
2307 | 0 | } |
2308 | | |
2309 | 0 | for (size_t iDim = 0; iDim < GetDimensionCount(); ++iDim) |
2310 | 0 | { |
2311 | 0 | const double dfOffset = |
2312 | 0 | oTranslationArray[iDim].ToDouble(); |
2313 | 0 | if (dfOffset != 0) |
2314 | 0 | { |
2315 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
2316 | 0 | "multiscales.layout[].asset=%s has a " |
2317 | 0 | "transform.translation[%d]=%f value. " |
2318 | 0 | "Ignoring that offset.", |
2319 | 0 | osAsset.c_str(), static_cast<int>(iDim), |
2320 | 0 | dfOffset); |
2321 | 0 | } |
2322 | 0 | } |
2323 | 0 | } |
2324 | 0 | } |
2325 | 0 | } |
2326 | | |
2327 | 0 | if (bFoundSpatialUUID && bAssetHasAllSpatialDims) |
2328 | 0 | { |
2329 | 0 | const auto oSpatialShape = oLayoutItem["spatial:shape"]; |
2330 | 0 | if (oSpatialShape.IsValid()) |
2331 | 0 | { |
2332 | 0 | if (oSpatialShape.GetType() != CPLJSONObject::Type::Array) |
2333 | 0 | { |
2334 | 0 | CPLError( |
2335 | 0 | CE_Warning, CPLE_AppDefined, |
2336 | 0 | "multiscales.layout[].asset=%s ignored, because its " |
2337 | 0 | "spatial:shape property is not an array", |
2338 | 0 | osAsset.c_str()); |
2339 | 0 | continue; |
2340 | 0 | } |
2341 | 0 | const auto oSpatialShapeArray = oSpatialShape.ToArray(); |
2342 | 0 | if (oSpatialShapeArray.size() != aosSpatialDimensions.size()) |
2343 | 0 | { |
2344 | 0 | CPLError( |
2345 | 0 | CE_Warning, CPLE_AppDefined, |
2346 | 0 | "multiscales.layout[].asset=%s ignored, because its " |
2347 | 0 | "spatial:shape property has not the expected number " |
2348 | 0 | "of values", |
2349 | 0 | osAsset.c_str()); |
2350 | 0 | continue; |
2351 | 0 | } |
2352 | | |
2353 | 0 | bool bSkip = false; |
2354 | 0 | for (const auto &[idx, oShapeVal] : |
2355 | 0 | cpl::enumerate(oSpatialShapeArray)) |
2356 | 0 | { |
2357 | 0 | const auto oIter = |
2358 | 0 | oMapAssetDimNameToIdx.find(aosSpatialDimensions[idx]); |
2359 | 0 | if (oIter != oMapAssetDimNameToIdx.end()) |
2360 | 0 | { |
2361 | 0 | const auto poDim = apoAssetDims[oIter->second]; |
2362 | 0 | if (poDim->GetSize() != |
2363 | 0 | static_cast<uint64_t>(oShapeVal.ToLong())) |
2364 | 0 | { |
2365 | 0 | bSkip = true; |
2366 | 0 | CPLError(CE_Warning, CPLE_AppDefined, |
2367 | 0 | "multiscales.layout[].asset=%s ignored, " |
2368 | 0 | "because its " |
2369 | 0 | "spatial:shape[%d] value is %" PRIu64 |
2370 | 0 | " whereas %" PRIu64 " was expected.", |
2371 | 0 | osAsset.c_str(), static_cast<int>(idx), |
2372 | 0 | static_cast<uint64_t>(oShapeVal.ToLong()), |
2373 | 0 | static_cast<uint64_t>(poDim->GetSize())); |
2374 | 0 | } |
2375 | 0 | } |
2376 | 0 | } |
2377 | 0 | if (bSkip) |
2378 | 0 | continue; |
2379 | 0 | } |
2380 | 0 | } |
2381 | | |
2382 | 0 | m_apoOverviews.push_back(std::move(poAssetArray)); |
2383 | 0 | } |
2384 | 0 | } |
2385 | | |
2386 | | /************************************************************************/ |
2387 | | /* ZarrV3Array::GetOverviewCount() */ |
2388 | | /************************************************************************/ |
2389 | | |
2390 | | int ZarrV3Array::GetOverviewCount() const |
2391 | 0 | { |
2392 | 0 | LoadOverviews(); |
2393 | 0 | return static_cast<int>(m_apoOverviews.size()); |
2394 | 0 | } |
2395 | | |
2396 | | /************************************************************************/ |
2397 | | /* ZarrV3Array::GetOverview() */ |
2398 | | /************************************************************************/ |
2399 | | |
2400 | | std::shared_ptr<GDALMDArray> ZarrV3Array::GetOverview(int idx) const |
2401 | 0 | { |
2402 | 0 | if (idx < 0 || idx >= GetOverviewCount()) |
2403 | 0 | return nullptr; |
2404 | 0 | return m_apoOverviews[idx]; |
2405 | 0 | } |