/src/igraph/fuzzing/community.cpp
Line | Count | Source |
1 | | /* |
2 | | igraph library. |
3 | | Copyright (C) 2024 The igraph development team |
4 | | |
5 | | This program is free software; you can redistribute it and/or modify |
6 | | it under the terms of the GNU General Public License as published by |
7 | | the Free Software Foundation; either version 2 of the License, or |
8 | | (at your option) any later version. |
9 | | |
10 | | This program is distributed in the hope that it will be useful, |
11 | | but WITHOUT ANY WARRANTY; without even the implied warranty of |
12 | | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
13 | | GNU General Public License for more details. |
14 | | |
15 | | You should have received a copy of the GNU General Public License |
16 | | along with this program; if not, write to the Free Software |
17 | | Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA |
18 | | 02110-1301 USA |
19 | | */ |
20 | | |
21 | | #include <igraph.h> |
22 | | #include <cstdlib> |
23 | | |
24 | | // Verify that all communities are connected subgraphs |
25 | 6.76k | void check_communities_are_connected(const igraph_t *graph, const igraph_vector_int_t *membership) { |
26 | 6.76k | igraph_vector_int_t memb, comp, map; |
27 | 6.76k | igraph_int_t vcount = igraph_vcount(graph); |
28 | 6.76k | igraph_int_t no; |
29 | | |
30 | 6.76k | igraph_vector_int_init_copy(&memb, membership); |
31 | 6.76k | igraph_reindex_membership(&memb, NULL, &no); |
32 | | |
33 | 6.76k | igraph_vector_int_init(&map, no); |
34 | 6.76k | igraph_vector_int_fill(&map, -1); |
35 | | |
36 | 6.76k | igraph_vector_int_init(&comp, 0); |
37 | | |
38 | 6.76k | igraph_connected_components(graph, &comp, NULL, NULL, IGRAPH_WEAK); |
39 | | |
40 | 327k | for (igraph_int_t v=0; v < vcount; v++) { |
41 | 320k | if (VECTOR(map)[ VECTOR(memb)[v] ] == -1) { |
42 | 319k | VECTOR(map)[ VECTOR(memb)[v] ] = VECTOR(comp)[v]; |
43 | 319k | } else { |
44 | 1.26k | IGRAPH_ASSERT(VECTOR(map)[ VECTOR(memb)[v] ] == VECTOR(comp)[v]); |
45 | 1.26k | } |
46 | 320k | } |
47 | | |
48 | 6.76k | igraph_vector_int_destroy(&comp); |
49 | 6.76k | igraph_vector_int_destroy(&map); |
50 | 6.76k | igraph_vector_int_destroy(&memb); |
51 | 6.76k | } |
52 | | |
53 | 3.42k | extern "C" int LLVMFuzzerTestOneInput(const uint8_t *Data, size_t Size) { |
54 | 3.42k | igraph_t graph; |
55 | 3.42k | igraph_vector_int_t edges; |
56 | | |
57 | 3.42k | igraph_set_warning_handler(igraph_warning_handler_ignore); |
58 | | |
59 | 3.42k | if (Size % 2 == 0 || Size > 512+1 || Size < 1) { |
60 | 14 | return 0; |
61 | 14 | } |
62 | | |
63 | 3.41k | igraph_vector_int_init(&edges, Size-1); |
64 | 207k | for (size_t i=0; i < Size-1; ++i) { |
65 | 204k | VECTOR(edges)[i] = Data[i+1]; |
66 | 204k | } |
67 | | |
68 | 3.41k | igraph_rng_seed(igraph_rng_default(), 42); |
69 | | |
70 | 3.41k | if (igraph_create(&graph, &edges, Data[0], IGRAPH_DIRECTED) == IGRAPH_SUCCESS) { |
71 | 3.41k | igraph_matrix_int_t merges, im; |
72 | 3.41k | igraph_matrix_t mat; |
73 | 3.41k | igraph_vector_int_t membership, membership2, iv, iv2; |
74 | 3.41k | igraph_vector_t mv, v; |
75 | 3.41k | igraph_real_t m, r; |
76 | 3.41k | igraph_int_t i; |
77 | 3.41k | igraph_bool_t b; |
78 | | |
79 | | /* Limit graph size for the sake of performance. */ |
80 | 3.41k | if (igraph_vcount(&graph) <= 64) { |
81 | 3.38k | igraph_matrix_int_init(&merges, 0, 0); |
82 | 3.38k | igraph_matrix_int_init(&im, 0, 0); |
83 | 3.38k | igraph_matrix_init(&mat, 0, 0); |
84 | 3.38k | igraph_vector_int_init(&membership, 0); |
85 | 3.38k | igraph_vector_int_init(&membership2, 0); |
86 | 3.38k | igraph_vector_int_init(&iv, 0); |
87 | 3.38k | igraph_vector_int_init(&iv2, 0); |
88 | 3.38k | igraph_vector_init(&mv, 0); |
89 | 3.38k | igraph_vector_init(&v, 0); |
90 | | |
91 | | // The IGRAPH_LPA_FAST version is temporarily switched to undirected until |
92 | | // the reason for the bad performance / infinite loop in the directed version |
93 | | // is debugged. See https://github.com/igraph/igraph/issues/2608 |
94 | 3.38k | igraph_community_label_propagation(&graph, &membership, IGRAPH_ALL, NULL, NULL, NULL, IGRAPH_LPA_FAST); |
95 | 3.38k | igraph_community_label_propagation(&graph, &membership, IGRAPH_OUT, NULL, NULL, NULL, IGRAPH_LPA_RETENTION); |
96 | 3.38k | igraph_community_label_propagation(&graph, &membership, IGRAPH_OUT, NULL, NULL, NULL, IGRAPH_LPA_DOMINANCE); |
97 | | |
98 | 3.38k | igraph_community_walktrap(&graph, NULL, 3, &merges, &mv, &membership); |
99 | 3.38k | igraph_community_edge_betweenness(&graph, &iv, &v, &merges, &iv2, &mv, &membership2, IGRAPH_DIRECTED, NULL, NULL); |
100 | | |
101 | 3.38k | igraph_community_leiden(&graph, NULL, NULL, NULL, 1.5, 0.01, false, 2, &membership, &i, &r); |
102 | 3.38k | check_communities_are_connected(&graph, &membership); |
103 | | |
104 | | // Take the opportunity to run functions that can use the output of community detection. |
105 | | |
106 | 3.38k | { |
107 | 3.38k | igraph_community_comparison_t method[] = { |
108 | 3.38k | IGRAPH_COMMCMP_VI, |
109 | 3.38k | IGRAPH_COMMCMP_NMI, |
110 | 3.38k | IGRAPH_COMMCMP_SPLIT_JOIN, |
111 | 3.38k | IGRAPH_COMMCMP_RAND, |
112 | 3.38k | IGRAPH_COMMCMP_ADJUSTED_RAND |
113 | 3.38k | }; |
114 | 20.2k | for (size_t i=0; i < sizeof(method) / sizeof(method[0]); i++) { |
115 | 16.9k | if ((method[i] == IGRAPH_COMMCMP_RAND || |
116 | 13.5k | method[i] == IGRAPH_COMMCMP_ADJUSTED_RAND) && |
117 | 6.76k | igraph_vcount(&graph) < 2) { |
118 | 26 | continue; |
119 | 26 | } |
120 | 16.8k | igraph_compare_communities(&membership, &membership2, &r, method[i]); |
121 | 16.8k | } |
122 | 3.38k | } |
123 | | |
124 | 3.38k | { |
125 | 3.38k | igraph_t graph2; |
126 | 3.38k | igraph_copy(&graph2, &graph); |
127 | 3.38k | igraph_contract_vertices(&graph2, &membership, NULL); |
128 | 3.38k | igraph_destroy(&graph2); |
129 | 3.38k | } |
130 | | |
131 | 3.38k | igraph_modularity(&graph, &membership, NULL, 1.5, IGRAPH_UNDIRECTED, &m); |
132 | 3.38k | igraph_modularity_matrix(&graph, NULL, 0.75, &mat, IGRAPH_DIRECTED); |
133 | 3.38k | igraph_assortativity_nominal(&graph, NULL, &membership, &r, IGRAPH_DIRECTED, true); |
134 | | |
135 | 3.38k | igraph_simplify(&graph, true, true, NULL); |
136 | 3.38k | igraph_community_voronoi(&graph, &membership, &iv, &m, NULL, NULL, IGRAPH_OUT, 1.0); |
137 | | |
138 | 3.38k | igraph_to_undirected(&graph, IGRAPH_TO_UNDIRECTED_COLLAPSE, NULL); |
139 | 3.38k | igraph_community_fastgreedy(&graph, NULL, &merges, &mv, &membership); |
140 | | |
141 | 3.38k | igraph_community_leiden(&graph, NULL, NULL, NULL, 1.5, 0.01, false, 2, &membership, &i, &r); |
142 | 3.38k | check_communities_are_connected(&graph, &membership); |
143 | | |
144 | 3.38k | igraph_community_multilevel(&graph, NULL, 0.8, &membership, &im, &mv); |
145 | | |
146 | 3.38k | igraph_is_connected(&graph, &b, IGRAPH_WEAK); |
147 | 3.38k | if (b) { |
148 | 230 | igraph_int_t no_comm = 4; |
149 | 230 | if (no_comm > igraph_vcount(&graph)) { |
150 | 59 | no_comm = igraph_vcount(&graph); |
151 | 59 | } |
152 | 230 | igraph_community_fluid_communities(&graph, no_comm, &membership); |
153 | 230 | } |
154 | | |
155 | 3.38k | igraph_vector_destroy(&v); |
156 | 3.38k | igraph_vector_destroy(&mv); |
157 | 3.38k | igraph_vector_int_destroy(&iv2); |
158 | 3.38k | igraph_vector_int_destroy(&iv); |
159 | 3.38k | igraph_vector_int_destroy(&membership2); |
160 | 3.38k | igraph_vector_int_destroy(&membership); |
161 | 3.38k | igraph_matrix_destroy(&mat); |
162 | 3.38k | igraph_matrix_int_destroy(&im); |
163 | 3.38k | igraph_matrix_int_destroy(&merges); |
164 | 3.38k | } |
165 | | |
166 | 3.41k | igraph_destroy(&graph); |
167 | 3.41k | } |
168 | | |
169 | 3.41k | igraph_vector_int_destroy(&edges); |
170 | | |
171 | 3.41k | IGRAPH_ASSERT(IGRAPH_FINALLY_STACK_EMPTY); |
172 | | |
173 | 3.41k | return 0; // Non-zero return values are reserved for future use. |
174 | 3.41k | } |