Coverage Report

Created: 2023-05-28 06:42

/src/netcdf-c/libdispatch/dinstance.c
Line
Count
Source (jump to first uncovered line)
1
/*
2
Copyright (c) 1998-2018 University Corporation for Atmospheric Research/Unidata
3
See COPYRIGHT for license information.
4
*/
5
6
/*
7
This file contains various instance operations that operate
8
on a deep level rather than the shallow level of e.g. nc_free_vlen_t.
9
Currently two operations are defined:
10
1. reclaim a vector of instances
11
2. copy a vector of instances
12
*/
13
14
#include "config.h"
15
#include <stdlib.h>
16
#include <string.h>
17
#include <assert.h>
18
#include "netcdf.h"
19
#include "nc4internal.h"
20
#include "nc4dispatch.h"
21
#include "ncoffsets.h"
22
#include "ncbytes.h"
23
24
#undef REPORT
25
#undef DEBUG
26
27
28
/* It is helpful to have a structure that contains memory and an offset */
29
typedef struct Position{char* memory; ptrdiff_t offset;} Position;
30
31
static int type_alignment_initialized = 0;
32
33
/* Forward */
34
#ifdef USE_NETCDF4
35
static int reclaim_datar(int ncid, nc_type xtype, Position*);
36
static int reclaim_compound(int ncid, nc_type xtype, size_t size, size_t nfields, Position* offset);
37
static int reclaim_vlen(int ncid, nc_type xtype, nc_type basetype, Position* offset);
38
static int reclaim_enum(int ncid, nc_type xtype, nc_type basetype, Position* offset);
39
static int reclaim_opaque(int ncid, nc_type xtype, size_t size, Position* offset);
40
41
static int copy_datar(int ncid, nc_type xtype, Position* src, Position* dst);
42
static int copy_compound(int ncid, nc_type xtype, size_t size, size_t nfields, Position* src, Position* dst);
43
static int copy_vlen(int ncid, nc_type xtype, nc_type basetype, Position* src, Position* dst);
44
static int copy_enum(int ncid, nc_type xtype, nc_type basetype, Position* src, Position* dst);
45
static int copy_opaque(int ncid, nc_type xtype, size_t size, Position* src,Position* dst);
46
47
static int dump_datar(int ncid, nc_type xtype, Position*, NCbytes* buf);
48
static int dump_compound(int ncid, nc_type xtype, size_t size, size_t nfields, Position* offset, NCbytes* buf);
49
static int dump_vlen(int ncid, nc_type xtype, nc_type basetype, Position* offset, NCbytes* buf);
50
static int dump_enum(int ncid, nc_type xtype, nc_type basetype, Position* offset, NCbytes* buf);
51
static int dump_opaque(int ncid, nc_type xtype, size_t size, Position* offset, NCbytes* buf);
52
53
static ptrdiff_t read_align(ptrdiff_t offset, size_t alignment);
54
#endif
55
56
static int NC_inq_any_type(int ncid, nc_type typeid, char *name, size_t *size, nc_type *basetypep, size_t *nfieldsp, int *classp);
57
58
/**
59
60
Reclaim a vector of instances of a type.  This improves upon
61
e.g. nc_free_vlen.  This recursively walks the top-level
62
instances to reclaim any nested data such as vlen or strings or such.
63
64
Assumes it is passed a pointer to count instances of xtype.
65
Reclaims any nested data.
66
67
WARNING: This needs access to the type metadata of the file, so
68
a valid ncid and typeid must be available, which means the file
69
must not have been closed or aborted.
70
71
WARNING: DOES NOT RECLAIM THE TOP-LEVEL MEMORY (see the
72
nc_reclaim_data_all function).  The reason is that we do not
73
know how it was allocated (e.g. static vs dynamic); only the
74
caller can know that.  But note that it assumes all memory
75
blocks other than the top were dynamically allocated, so they
76
will be free'd.
77
78
Should work for any netcdf format.
79
80
@param ncid root id
81
@param xtype type id
82
@param memory ptr to top-level memory to reclaim
83
@param count number of instances of the type in memory block
84
@return error code
85
*/
86
87
int
88
nc_reclaim_data(int ncid, nc_type xtype, void* memory, size_t count)
89
0
{
90
0
    int stat = NC_NOERR;
91
0
    size_t i;
92
0
    Position offset;
93
0
    int isf;
94
95
0
    if(ncid < 0 || xtype <= 0)
96
0
        {stat = NC_EINVAL; goto done;}
97
0
    if(memory == NULL && count > 0)
98
0
        {stat = NC_EINVAL; goto done;}
99
0
    if(memory == NULL || count == 0)
100
0
        goto done; /* ok, do nothing */
101
#ifdef REPORT
102
    fprintf(stderr,">>> reclaim: memory=%p count=%lu ncid=%d xtype=%d\n",memory,(unsigned long)count,ncid,xtype);
103
#endif
104
105
    /* Optimizations */
106
    /* 1. Vector of fixed size types */
107
0
    if((stat = NC4_inq_type_fixed_size(ncid,xtype,&isf))) goto done;
108
0
    if(isf) goto done; /* no need to reclaim anything */
109
110
0
#ifdef USE_NETCDF4
111
    /* 2.Vector of strings */
112
0
    if(xtype == NC_STRING) {
113
0
  char** ss = (char**)memory;
114
0
        for(i=0;i<count;i++) {
115
0
      nullfree(ss[i]);
116
0
  }
117
0
        goto done;
118
0
    }
119
0
    offset.memory = (char*)memory; /* use char* so we can do pointer arithmetic */
120
0
    offset.offset = 0;
121
0
    for(i=0;i<count;i++) {
122
0
        if((stat=reclaim_datar(ncid,xtype,&offset))) /* reclaim one instance */
123
0
      break;
124
0
    }
125
#else
126
    stat = NC_EBADTYPE;
127
#endif
128
129
0
done:
130
0
    return stat;
131
0
}
132
133
/* Alternate entry point: includes recovering the top-level memory */
134
int
135
nc_reclaim_data_all(int ncid, nc_type xtypeid, void* memory, size_t count)
136
0
{
137
0
    int stat = NC_NOERR;
138
0
    stat = nc_reclaim_data(ncid,xtypeid,memory,count);
139
0
    if(stat == NC_NOERR && memory != NULL)
140
0
        free(memory);
141
0
    return stat;
142
0
}
143
144
#ifdef USE_NETCDF4
145
/* Recursive type walker: reclaim a single instance */
146
static int
147
reclaim_datar(int ncid, nc_type xtype, Position* offset)
148
0
{
149
0
    int stat = NC_NOERR;
150
0
    size_t xsize;
151
0
    nc_type basetype;
152
0
    size_t nfields;
153
0
    int klass, isf;
154
155
0
    if((stat = NC4_inq_type_fixed_size(ncid,xtype,&isf))) goto done;
156
157
    /* Get relevant type info */
158
0
    if((stat = NC_inq_any_type(ncid,xtype,NULL,&xsize,&basetype,&nfields,&klass))) goto done;
159
160
0
    if(isf) { /* no need to reclaim anything */
161
0
  offset->offset += xsize;
162
0
  goto done;
163
0
    }
164
165
0
    switch  (xtype) {
166
0
    case NC_STRING: {
167
0
        char** sp = (char**)(offset->memory + offset->offset);
168
        /* Need to reclaim string */
169
0
  if(*sp != NULL) free(*sp);
170
0
  offset->offset += xsize;
171
0
  } break;
172
0
    default:
173
      /* reclaim a user type */
174
0
        switch (klass) {
175
0
        case NC_OPAQUE: stat = reclaim_opaque(ncid,xtype,xsize,offset); break;
176
0
        case NC_ENUM: stat = reclaim_enum(ncid,xtype,basetype,offset); break;
177
0
        case NC_COMPOUND: stat = reclaim_compound(ncid,xtype,xsize,nfields,offset); break;
178
0
        case NC_VLEN:
179
0
      stat = reclaim_vlen(ncid,xtype,basetype,offset);
180
0
      break;
181
0
        default:
182
0
            stat = NC_EINVAL;
183
0
      break;
184
0
        }
185
0
  break;
186
0
    }
187
0
done:
188
0
    return stat;
189
0
}
190
191
static int
192
reclaim_vlen(int ncid, nc_type xtype, nc_type basetype, Position* offset)
193
0
{
194
0
    int stat = NC_NOERR;
195
0
    size_t i;
196
0
    nc_vlen_t* vl = (nc_vlen_t*)(offset->memory+offset->offset);
197
198
0
    if(vl->len > 0 && vl->p == NULL)
199
0
        {stat = NC_EINVAL; goto done;}
200
201
    /* Free up each entry in the vlen list */
202
0
    if(vl->len > 0) {
203
0
  Position voffset;
204
0
  size_t alignment = 0;
205
0
  if((stat = NC_type_alignment(ncid,basetype,&alignment))) goto done;;
206
0
  voffset.memory = vl->p;
207
0
  voffset.offset = 0;
208
0
        for(i=0;i<vl->len;i++) {
209
0
      voffset.offset = read_align(voffset.offset,alignment);
210
0
      if((stat = reclaim_datar(ncid,basetype,&voffset))) goto done;
211
0
  }
212
0
  free(vl->p);
213
0
    }
214
0
    offset->offset += sizeof(nc_vlen_t);
215
216
0
done:
217
0
    return stat;
218
0
}
219
220
static int
221
reclaim_enum(int ncid, nc_type xtype, nc_type basetype, Position* offset)
222
0
{
223
0
    int stat = NC_NOERR;
224
0
abort();
225
226
    /* basically same as an instance of the enum's integer basetype */
227
0
    stat = reclaim_datar(ncid,basetype,offset);
228
0
    return stat;
229
0
}
230
231
static int
232
reclaim_opaque(int ncid, nc_type xtype, size_t size, Position* offset)
233
0
{
234
0
abort();
235
    /* basically a fixed size sequence of bytes */
236
0
    offset->offset += size;
237
0
    return NC_NOERR;
238
0
}
239
240
static int
241
reclaim_compound(int ncid, nc_type xtype, size_t size, size_t nfields, Position* offset)
242
0
{
243
0
    int stat = NC_NOERR;
244
0
    size_t fid, i, arraycount;
245
0
    ptrdiff_t saveoffset;
246
0
    int ndims;
247
0
    int dimsizes[NC_MAX_VAR_DIMS];
248
249
0
    saveoffset = offset->offset;
250
251
    /* Get info about each field in turn and reclaim it */
252
0
    for(fid=0;fid<nfields;fid++) {
253
0
  size_t fieldalignment;
254
0
  nc_type fieldtype;
255
256
  /* Get all relevant info about the field */
257
0
  if((stat = nc_inq_compound_field(ncid,xtype,fid,NULL,&fieldalignment,&fieldtype,&ndims,dimsizes))) goto done;
258
259
0
  if(ndims == 0) {ndims=1; dimsizes[0]=1;} /* fake the scalar case */
260
  /* Align to this field */
261
0
  offset->offset = saveoffset + fieldalignment;
262
  /* compute the total number of elements in the field array */
263
0
  arraycount = 1;
264
0
  for(i=0;i<ndims;i++) arraycount *= dimsizes[i];
265
0
  for(i=0;i<arraycount;i++) {
266
0
      if((stat = reclaim_datar(ncid, fieldtype, offset))) goto done;
267
0
  }
268
0
    }
269
    /* Return to beginning of the compound and move |compound| */
270
0
    offset->offset = saveoffset;
271
0
    offset->offset += size;
272
273
0
done:
274
0
    return stat;
275
0
}
276
#endif
277
278
/**************************************************/
279
280
/**
281
Copy a vector of instances of a type.  This recursively walks
282
the top-level instances to copy any nested data such as vlen or
283
strings or such.
284
285
Assumes it is passed a pointer to count instances of xtype and a
286
space into which to copy the instance.  Copys any nested data.
287
288
WARNING: This needs access to the type metadata of the file, so
289
a valid ncid and typeid must be available, which means the file
290
must not have been closed or aborted.
291
292
WARNING: DOES NOT ALLOCATE THE TOP-LEVEL MEMORY (see the
293
nc_copy_data_all function).  Note that all memory blocks other
294
than the top are dynamically allocated.
295
296
Should work for any netcdf format.
297
298
@param ncid root id
299
@param xtype type id
300
@param memory ptr to top-level memory to copy
301
@param count number of instances of the type in memory block
302
@param copy top-level space into which to copy the instance
303
@return error code
304
*/
305
306
int
307
nc_copy_data(int ncid, nc_type xtype, const void* memory, size_t count, void* copy)
308
0
{
309
0
    int stat = NC_NOERR;
310
0
    size_t i;
311
0
    Position src;
312
0
    Position dst;
313
0
    size_t xsize;
314
0
    int isf;
315
316
0
    if(ncid < 0 || xtype <= 0)
317
0
        {stat = NC_EINVAL; goto done;}
318
0
    if(memory == NULL && count > 0)
319
0
        {stat = NC_EINVAL; goto done;}
320
0
    if(copy == NULL && count > 0)
321
0
        {stat = NC_EINVAL; goto done;}
322
0
    if(memory == NULL || count == 0)
323
0
        goto done; /* ok, do nothing */
324
325
#ifdef REPORT
326
    fprintf(stderr,">>> copy   : copy  =%p memory=%p count=%lu ncid=%d xtype=%d\n",copy,memory,(unsigned long)count,ncid,xtype);
327
#endif
328
329
    /* Get type size */
330
0
    if((stat = NC_inq_any_type(ncid,xtype,NULL,&xsize,NULL,NULL,NULL))) goto done;
331
332
    /* Optimizations */
333
    /* 1. Vector of fixed sized objects */
334
0
    if((stat = NC4_inq_type_fixed_size(ncid,xtype,&isf))) goto done;
335
0
    if(isf) {
336
0
  memcpy(copy,memory,xsize*count);
337
0
  goto done;
338
0
    }
339
340
0
#ifdef USE_NETCDF4
341
0
    src.memory = (char*)memory; /* use char* so we can do pointer arithmetic */
342
0
    src.offset = 0;
343
0
    dst.memory = (char*)copy; /* use char* so we can do pointer arithmetic */
344
0
    dst.offset = 0;
345
0
    for(i=0;i<count;i++) {
346
0
        if((stat=copy_datar(ncid,xtype,&src,&dst))) /* copy one instance copy_datar will increment src and dst*/
347
0
      break;
348
0
    }
349
#else
350
    stat = NC_EBADTYPE;
351
#endif
352
0
done:
353
0
    return stat;
354
0
}
355
356
/* Alternate entry point: includes recovering the top-level memory */
357
int
358
nc_copy_data_all(int ncid, nc_type xtype, const void* memory, size_t count, void** copyp)
359
0
{
360
0
    int stat = NC_NOERR;
361
0
    size_t xsize = 0;
362
0
    void* copy = NULL;
363
364
    /* Get type size */
365
0
    if((stat = NC_inq_any_type(ncid,xtype,NULL,&xsize,NULL,NULL,NULL))) goto done;
366
367
    /* allocate the top-level */
368
0
    if(count > 0) {
369
0
        if((copy = calloc(xsize,count))==NULL)
370
0
      {stat = NC_ENOMEM; goto done;}
371
0
    }
372
0
    stat = nc_copy_data(ncid,xtype,memory,count,copy);
373
0
    if(copyp) {*copyp = copy; copy = NULL;}
374
375
0
done:
376
0
    if(copy)
377
0
        stat = nc_reclaim_data_all(ncid,xtype,copy,count);
378
379
0
    return stat;
380
0
}
381
382
#ifdef USE_NETCDF4
383
/* Recursive type walker: copy a single instance */
384
static int
385
copy_datar(int ncid, nc_type xtype, Position* src, Position* dst)
386
0
{
387
0
    int stat = NC_NOERR;
388
0
    size_t xsize;
389
0
    nc_type basetype;
390
0
    size_t nfields;
391
0
    int xclass,isf;
392
393
0
    if((stat = NC_inq_any_type(ncid,xtype,NULL,&xsize,&basetype,&nfields,&xclass))) goto done;
394
395
    /* Optimizations */
396
    /* 1. Vector of fixed size types */
397
0
    if((stat = NC4_inq_type_fixed_size(ncid,xtype,&isf))) goto done;
398
0
    if(isf) {
399
0
  memcpy(dst->memory+dst->offset,src->memory+src->offset,xsize*1);
400
0
        src->offset += xsize;
401
0
        dst->offset += xsize;
402
0
  goto done;
403
0
    }
404
405
0
    switch  (xtype) {
406
0
    case NC_STRING: {
407
0
        char** sp = (char**)(src->memory + src->offset);
408
0
  char* copy = NULL;
409
        /* Need to copy string */
410
0
  if(*sp != NULL) {
411
0
      if((copy = strdup(*sp))==NULL) {stat = NC_ENOMEM; goto done;}
412
0
  }
413
0
  memcpy(dst->memory+dst->offset,(void*)&copy,sizeof(char*));
414
0
  src->offset += xsize;
415
0
  dst->offset += xsize;
416
0
  } break;
417
0
    default:
418
      /* copy a user type */
419
0
        switch (xclass) {
420
0
        case NC_OPAQUE: stat = copy_opaque(ncid,xtype,xsize,src,dst); break;
421
0
        case NC_ENUM: stat = copy_enum(ncid,xtype,basetype,src,dst); break;
422
0
        case NC_COMPOUND: stat = copy_compound(ncid,xtype,xsize,nfields,src,dst); break;
423
0
        case NC_VLEN: stat = copy_vlen(ncid,xtype,basetype,src,dst); break;
424
0
        default: stat = NC_EINVAL; break;
425
0
        }
426
0
  break;
427
0
    }
428
0
done:
429
0
    return stat;
430
0
}
431
432
static int
433
copy_vlen(int ncid, nc_type xtype, nc_type basetype, Position* src, Position* dst)
434
0
{
435
0
    int stat = NC_NOERR;
436
0
    size_t i, basetypesize;
437
0
    nc_vlen_t* vl = (nc_vlen_t*)(src->memory+src->offset);
438
0
    nc_vlen_t copy = {0,NULL};
439
440
0
    if(vl->len > 0 && vl->p == NULL)
441
0
        {stat = NC_EINVAL; goto done;}
442
443
    /* Get basetype info */
444
0
    if((stat = NC_inq_any_type(ncid,basetype,NULL,&basetypesize,NULL,NULL,NULL))) goto done;
445
446
    /* Make space in the copy vlen */
447
0
    if(vl->len > 0) {
448
0
        copy.len = vl->len;
449
0
        if((copy.p = calloc(copy.len,basetypesize))==NULL) {stat = NC_ENOMEM; goto done;}
450
0
    } 
451
    /* Copy each entry in the vlen list */
452
0
    if(vl->len > 0) {
453
0
  Position vsrc, vdst;
454
0
  size_t alignment = 0;
455
0
  if((stat = NC_type_alignment(ncid,basetype,&alignment))) goto done;;
456
0
  vsrc.memory = vl->p;
457
0
  vsrc.offset = 0;
458
0
  vdst.memory = copy.p;
459
0
  vdst.offset = 0;
460
0
        for(i=0;i<vl->len;i++) {
461
0
      vsrc.offset= read_align(vsrc.offset,alignment);
462
0
          vdst.offset= read_align(vdst.offset,alignment);
463
0
      if((stat = copy_datar(ncid,basetype,&vsrc,&vdst))) goto done;
464
0
  }
465
0
    }
466
    /* Move into place */
467
0
    memcpy(dst->memory+dst->offset,&copy,sizeof(nc_vlen_t));
468
0
    src->offset += sizeof(nc_vlen_t);
469
0
    dst->offset += sizeof(nc_vlen_t);
470
471
0
done:
472
0
    if(stat) {
473
0
  nullfree(copy.p);
474
0
    }
475
0
    return stat;
476
0
}
477
478
static int
479
copy_enum(int ncid, nc_type xtype, nc_type basetype, Position* src, Position* dst)
480
0
{
481
0
    int stat = NC_NOERR;
482
0
abort();
483
    /* basically same as an instance of the enum's integer basetype */
484
0
    stat = copy_datar(ncid,basetype,src,dst);
485
0
    return stat;
486
0
}
487
488
static int
489
copy_opaque(int ncid, nc_type xtype, size_t size, Position* src, Position* dst)
490
0
{
491
0
abort();
492
    /* basically a fixed size sequence of bytes */
493
0
    memcpy(dst->memory+dst->offset,src->memory+src->offset,size);
494
0
    src->offset += size;
495
0
    dst->offset += size;
496
0
    return NC_NOERR;
497
0
}
498
499
static int
500
copy_compound(int ncid, nc_type xtype, size_t size, size_t nfields, Position* src, Position* dst)
501
0
{
502
0
    int stat = NC_NOERR;
503
0
    size_t fid, i, arraycount;
504
0
    ptrdiff_t savesrcoffset, savedstoffset;
505
0
    int ndims;
506
0
    int dimsizes[NC_MAX_VAR_DIMS];
507
508
0
    savesrcoffset = src->offset;
509
0
    savedstoffset = dst->offset;
510
511
    /* Get info about each field in turn and copy it */
512
0
    for(fid=0;fid<nfields;fid++) {
513
0
  size_t fieldoffset;
514
0
  nc_type fieldtype;
515
0
char name[NC_MAX_NAME];
516
517
  /* Get all relevant info about the field */
518
0
  if((stat = nc_inq_compound_field(ncid,xtype,fid,name,&fieldoffset,&fieldtype,&ndims,dimsizes))) goto done;
519
520
0
  if(ndims == 0) {ndims=1; dimsizes[0]=1;} /* fake the scalar case */
521
  /* Set offset for this field */
522
#ifdef DEBUG
523
fprintf(stderr,"before: offset = %d after: offset = %d\n",(int)src->offset,(int)(savesrcoffset+fieldoffset));
524
#endif
525
0
  src->offset = savesrcoffset+fieldoffset;
526
0
  dst->offset = savedstoffset+fieldoffset;
527
#ifdef DEBUG
528
fprintf(stderr,"field %s(%d) = %d\n",name,(int)fieldoffset,(int)src->offset);
529
#endif
530
  /* compute the total number of elements in the field array */
531
0
  arraycount = 1;
532
0
  for(i=0;i<ndims;i++) arraycount *= dimsizes[i];
533
0
  for(i=0;i<arraycount;i++) {
534
0
      if((stat = copy_datar(ncid, fieldtype, src, dst))) goto done;
535
0
  }
536
#ifdef DEBUG
537
fprintf(stderr,"src=(%d,%p)\n",(int)src->offset,src->memory);
538
#endif
539
0
    }
540
#ifdef DEBUG
541
fprintf(stderr,"\n");
542
#endif
543
    /* Return to beginning of the compound and move |compound| */
544
0
    src->offset = savesrcoffset;
545
0
    dst->offset = savedstoffset;
546
0
    src->offset += size;
547
0
    dst->offset += size;
548
549
0
done:
550
0
    return stat;
551
0
}
552
#endif
553
554
/**************************************************/
555
/* Alignment functions */
556
557
#ifdef USE_NETCDF4
558
static ptrdiff_t
559
read_align(ptrdiff_t offset, size_t alignment)
560
0
{
561
0
  size_t loc_align = (alignment == 0 ? 1 : alignment);
562
0
  size_t delta = (offset % loc_align);
563
0
  if(delta == 0) return offset;
564
0
  return offset + (alignment - delta);
565
0
}
566
567
568
/**
569
 @param ncid - only needed for a compound type
570
 @param xtype - type for which alignment is requested
571
 @return 0 if not found
572
*/
573
int
574
NC_type_alignment(int ncid, nc_type xtype, size_t* alignp)
575
0
{
576
0
    int stat = NC_NOERR;
577
0
    size_t align = 0;
578
0
    int klass;
579
580
0
    if(!type_alignment_initialized) {
581
0
  NC_compute_alignments();
582
0
  type_alignment_initialized = 1;
583
0
    }
584
0
    if(xtype <= NC_MAX_ATOMIC_TYPE)
585
0
        {stat = NC_class_alignment(xtype,&align); goto done;}
586
0
    else {/* Presumably a user type */
587
0
        if((stat = NC_inq_any_type(ncid,xtype,NULL,NULL,NULL,NULL,&klass))) goto done;
588
0
  switch(klass) {
589
0
        case NC_VLEN: stat = NC_class_alignment(klass,&align); break;
590
0
        case NC_OPAQUE: stat = NC_class_alignment(klass,&align); break;
591
0
        case NC_COMPOUND: {/* get alignment of the first field of the compound */
592
0
      nc_type fieldtype;
593
      /* Get all relevant info about the first field */
594
0
      if((stat = nc_inq_compound_field(ncid,xtype,0,NULL,NULL,&fieldtype,NULL,NULL))) goto done;
595
0
      stat =  NC_type_alignment(ncid,fieldtype,&align); /* may recurse repeatedly */
596
0
  } break;
597
0
        default: break;
598
0
  }
599
0
    }
600
0
    if(alignp) *alignp = align;
601
602
0
done:
603
#if 0
604
Why was this here?
605
    if(stat == NC_NOERR && align == 0) stat = NC_EINVAL;
606
#endif
607
0
    return stat;
608
0
}
609
#endif
610
611
/**************************************************/
612
/* Dump an instance into a bytebuffer
613
614
@param ncid root id
615
@param xtype type id
616
@param memory ptr to top-level memory to dump
617
@param count number of instances of the type in memory block
618
@return error code
619
*/
620
621
int
622
nc_dump_data(int ncid, nc_type xtype, void* memory, size_t count, char** bufp)
623
0
{
624
0
    int stat = NC_NOERR;
625
0
    size_t i;
626
0
    Position offset;
627
0
    NCbytes* buf = ncbytesnew();
628
629
0
    if(ncid < 0 || xtype <= 0)
630
0
        {stat = NC_EINVAL; goto done;}
631
0
    if(memory == NULL && count > 0)
632
0
        {stat = NC_EINVAL; goto done;}
633
0
    if(memory == NULL || count == 0)
634
0
        goto done; /* ok, do nothing */
635
#ifdef REPORT
636
    fprintf(stderr,">>> dump: memory=%p count=%lu ncid=%d xtype=%d\n",memory,(unsigned long)count,ncid,xtype);
637
#endif
638
0
    offset.memory = (char*)memory; /* use char* so we can do pointer arithmetic */
639
0
    offset.offset = 0;
640
0
    for(i=0;i<count;i++) {
641
0
  if(i > 0) ncbytescat(buf," ");
642
0
        if((stat=dump_datar(ncid,xtype,&offset,buf))) /* dump one instance */
643
0
      break;
644
0
    }
645
646
0
    if(bufp) *bufp = ncbytesextract(buf);
647
648
0
done:
649
0
    ncbytesfree(buf);
650
0
    return stat;
651
0
}
652
653
int
654
nc_print_data(int ncid, nc_type xtype, void* memory, size_t count)
655
0
{
656
0
    char* s = NULL;
657
0
    int stat = NC_NOERR;
658
0
    if((stat=nc_dump_data(ncid,xtype,memory,count,&s))) return stat;
659
0
    fprintf(stderr,"%s\n",s);
660
0
    nullfree(s)
661
0
    return stat;
662
0
}
663
664
/* Recursive type walker: dump a single instance */
665
static int
666
dump_datar(int ncid, nc_type xtype, Position* offset, NCbytes* buf)
667
0
{
668
0
    int stat = NC_NOERR;
669
0
    size_t xsize;
670
0
    nc_type basetype;
671
0
    size_t nfields;
672
0
    int klass;
673
0
    char s[128];
674
675
    /* Get relevant type info */
676
0
    if((stat = NC_inq_any_type(ncid,xtype,NULL,&xsize,&basetype,&nfields,&klass))) goto done;
677
678
0
    switch  (xtype) {
679
0
    case NC_CHAR:
680
0
  snprintf(s,sizeof(s),"'%c'",*(char*)(offset->memory+offset->offset));
681
0
  ncbytescat(buf,s);
682
0
  break;
683
0
    case NC_BYTE:
684
0
  snprintf(s,sizeof(s),"%d",*(char*)(offset->memory+offset->offset));
685
0
  ncbytescat(buf,s);
686
0
  break;
687
0
    case NC_UBYTE:
688
0
  snprintf(s,sizeof(s),"%u",*(unsigned char*)(offset->memory+offset->offset));
689
0
  ncbytescat(buf,s);
690
0
  break;
691
0
    case NC_SHORT:
692
0
  snprintf(s,sizeof(s),"%d",*(short*)(offset->memory+offset->offset));
693
0
  ncbytescat(buf,s);
694
0
  break;
695
0
    case NC_USHORT:
696
0
  snprintf(s,sizeof(s),"%d",*(unsigned short*)(offset->memory+offset->offset));
697
0
  ncbytescat(buf,s);
698
0
  break;
699
0
    case NC_INT:
700
0
  snprintf(s,sizeof(s),"%d",*(int*)(offset->memory+offset->offset));
701
0
  ncbytescat(buf,s);
702
0
  break;
703
0
    case NC_UINT:
704
0
  snprintf(s,sizeof(s),"%d",*(unsigned int*)(offset->memory+offset->offset));
705
0
  ncbytescat(buf,s);
706
0
  break;
707
0
    case NC_FLOAT:
708
0
  snprintf(s,sizeof(s),"%f",*(float*)(offset->memory+offset->offset));
709
0
  ncbytescat(buf,s);
710
0
  break;
711
0
    case NC_INT64:
712
0
  snprintf(s,sizeof(s),"%lld",*(long long*)(offset->memory+offset->offset));
713
0
  ncbytescat(buf,s);
714
0
  break;
715
0
    case NC_UINT64:
716
0
  snprintf(s,sizeof(s),"%llu",*(unsigned long long*)(offset->memory+offset->offset));
717
0
  ncbytescat(buf,s);
718
0
  break;
719
0
    case NC_DOUBLE:
720
0
  snprintf(s,sizeof(s),"%lf",*(double*)(offset->memory+offset->offset));
721
0
  ncbytescat(buf,s);
722
0
  break;
723
0
#ifdef USE_NETCDF4
724
0
    case NC_STRING: {
725
0
        char* s = *(char**)(offset->memory + offset->offset);
726
0
  ncbytescat(buf,"\"");
727
0
  ncbytescat(buf,s);
728
0
  ncbytescat(buf,"\"");
729
0
  } break;
730
0
#endif
731
0
    default:
732
0
#ifdef USE_NETCDF4
733
      /* dump a user type */
734
0
        switch (klass) {
735
0
        case NC_OPAQUE: stat = dump_opaque(ncid,xtype,xsize,offset,buf); break;
736
0
        case NC_ENUM: stat = dump_enum(ncid,xtype,basetype,offset,buf); break;
737
0
        case NC_COMPOUND: stat = dump_compound(ncid,xtype,xsize,nfields,offset,buf); break;
738
0
        case NC_VLEN: stat = dump_vlen(ncid,xtype,basetype,offset,buf); break;
739
0
        default: stat = NC_EBADTYPE; break;
740
0
        }
741
#else
742
  stat = NC_EBADTYPE;
743
#endif
744
0
  break;
745
0
    }
746
0
    if(xtype <= NC_MAX_ATOMIC_TYPE)
747
0
  offset->offset += xsize;
748
749
0
done:
750
0
    return stat;
751
0
}
752
753
#ifdef USE_NETCDF4
754
static int
755
dump_vlen(int ncid, nc_type xtype, nc_type basetype, Position* offset, NCbytes* buf)
756
0
{
757
0
    int stat = NC_NOERR;
758
0
    size_t i;
759
0
    nc_vlen_t* vl = (nc_vlen_t*)(offset->memory+offset->offset);
760
0
    char s[128];
761
762
0
    if(vl->len > 0 && vl->p == NULL)
763
0
        {stat = NC_EINVAL; goto done;}
764
765
0
    snprintf(s,sizeof(s),"{len=%u,p=(",(unsigned)vl->len);
766
0
    ncbytescat(buf,s);
767
    /* dump each entry in the vlen list */
768
0
    if(vl->len > 0) {
769
0
  Position voffset;
770
0
  size_t alignment = 0;
771
0
  if((stat = NC_type_alignment(ncid,basetype,&alignment))) goto done;;
772
0
  voffset.memory = vl->p;
773
0
  voffset.offset = 0;
774
0
        for(i=0;i<vl->len;i++) {
775
0
      if(i > 0) ncbytescat(buf," ");
776
0
      voffset.offset = read_align(voffset.offset,alignment);
777
0
      if((stat = dump_datar(ncid,basetype,&voffset,buf))) goto done;
778
0
  }
779
0
    } 
780
0
    ncbytescat(buf,")}");
781
0
    offset->offset += sizeof(nc_vlen_t);
782
    
783
0
done:
784
0
    return stat;
785
0
}
786
787
static int
788
dump_enum(int ncid, nc_type xtype, nc_type basetype, Position* offset, NCbytes* buf)
789
0
{
790
0
    int stat = NC_NOERR;
791
792
    /* basically same as an instance of the enum's integer basetype */
793
0
    stat = dump_datar(ncid,basetype,offset,buf);
794
0
    return stat;
795
0
}
796
797
static int
798
dump_opaque(int ncid, nc_type xtype, size_t size, Position* offset, NCbytes* buf)
799
0
{
800
0
    size_t i;
801
0
    char sx[16];
802
    /* basically a fixed size sequence of bytes */
803
0
    ncbytescat(buf,"|");
804
0
    for(i=0;i<size;i++) {
805
0
  unsigned char x = *(offset->memory+offset->offset+i);
806
0
  snprintf(sx,sizeof(sx),"%2x",x);
807
0
  ncbytescat(buf,sx);
808
0
    }
809
0
    ncbytescat(buf,"|");
810
0
    offset->offset += size;
811
0
    return NC_NOERR;
812
0
}
813
814
static int
815
dump_compound(int ncid, nc_type xtype, size_t size, size_t nfields, Position* offset, NCbytes* buf)
816
0
{
817
0
    int stat = NC_NOERR;
818
0
    size_t fid, i, arraycount;
819
0
    ptrdiff_t saveoffset;
820
0
    int ndims;
821
0
    int dimsizes[NC_MAX_VAR_DIMS];
822
823
0
    saveoffset = offset->offset;
824
825
0
    ncbytescat(buf,"<");
826
827
    /* Get info about each field in turn and dump it */
828
0
    for(fid=0;fid<nfields;fid++) {
829
0
  size_t fieldalignment;
830
0
  nc_type fieldtype;
831
0
  char name[NC_MAX_NAME];
832
0
  char sd[128];
833
834
  /* Get all relevant info about the field */
835
0
  if((stat = nc_inq_compound_field(ncid,xtype,fid,name,&fieldalignment,&fieldtype,&ndims,dimsizes))) goto done;
836
0
  if(fid > 0) ncbytescat(buf,";");
837
0
  ncbytescat(buf,name);
838
0
        if(ndims > 0) {
839
0
      int j;
840
0
      for(j=0;j<ndims;j++) {
841
0
    snprintf(sd,sizeof(sd),"[%d]",(int)dimsizes[j]);
842
0
    ncbytescat(buf,sd);
843
0
      }
844
0
  }
845
0
  if(ndims == 0) {ndims=1; dimsizes[0]=1;} /* fake the scalar case */
846
  /* Align to this field */
847
0
  offset->offset = saveoffset + fieldalignment;
848
  /* compute the total number of elements in the field array */
849
0
  arraycount = 1;
850
0
  for(i=0;i<ndims;i++) arraycount *= dimsizes[i];
851
0
  for(i=0;i<arraycount;i++) {
852
0
      if(i > 0) ncbytescat(buf," ");
853
0
      if((stat = dump_datar(ncid, fieldtype, offset,buf))) goto done;
854
0
  }
855
0
    }
856
0
    ncbytescat(buf,">");
857
    /* Return to beginning of the compound and move |compound| */
858
0
    offset->offset = saveoffset;
859
0
    offset->offset += size;
860
861
0
done:
862
0
    return stat;
863
0
}
864
#endif
865
866
/* Extended version that can handle atomic typeids */
867
int
868
NC_inq_any_type(int ncid, nc_type typeid, char *name, size_t *size,
869
                  nc_type *basetypep, size_t *nfieldsp, int *classp)
870
0
{
871
0
    int stat = NC_NOERR;
872
0
#ifdef USE_NETCDF4
873
0
    if(typeid >= NC_FIRSTUSERTYPEID) {
874
0
        stat = nc_inq_user_type(ncid,typeid,name,size,basetypep,nfieldsp,classp);
875
0
    } else
876
0
#endif
877
0
    if(typeid > NC_NAT && typeid <= NC_MAX_ATOMIC_TYPE) {
878
0
  if(basetypep) *basetypep = NC_NAT;
879
0
  if(nfieldsp) *nfieldsp = 0;
880
0
  if(classp) *classp = typeid;
881
0
  stat = NC4_inq_atomic_type(typeid,name,size);
882
0
    } else
883
0
        stat = NC_EBADTYPE;
884
0
    return stat;
885
0
}