Coverage Report

Created: 2023-05-28 06:42

/src/netcdf-c/libsrc4/nc4grp.c
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Source (jump to first uncovered line)
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/* Copyright 2005-2018, University Corporation for Atmospheric
2
 * Research. See COPYRIGHT file for copying and redistribution
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 * conditions. */
4
/**
5
 * @file
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 * @internal This file is part of netcdf-4, a netCDF-like interface
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 * for HDF5, or a HDF5 backend for netCDF, depending on your point of
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 * view.
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 *
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 * This file handles groups.
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 *
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 * @author Ed Hartnett
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 */
14
15
#include "nc4internal.h"
16
#include "nc4dispatch.h"
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/**
18
 * @internal Given an ncid and group name (NULL gets root group),
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 * return the ncid of that group.
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 *
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 * @param ncid File and group ID.
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 * @param name Pointer that gets name.
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 * @param grp_ncid Pointer that gets group ncid.
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 *
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 * @return ::NC_NOERR No error.
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 * @return ::NC_EBADID Bad ncid.
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 * @return ::NC_ENOTNC4 Not a netCDF-4 file.
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 * @return ::NC_ENOGRP Group not found.
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 * @author Ed Hartnett
30
 */
31
int
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NC4_inq_ncid(int ncid, const char *name, int *grp_ncid)
33
0
{
34
0
    NC_GRP_INFO_T *grp, *g;
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0
    NC_FILE_INFO_T *h5;
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0
    char norm_name[NC_MAX_NAME + 1];
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0
    int retval;
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39
0
    LOG((2, "nc_inq_ncid: ncid 0x%x name %s", ncid, name));
40
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    /* Find info for this file and group, and set pointer to each. */
42
0
    if ((retval = nc4_find_grp_h5(ncid, &grp, &h5)))
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0
        return retval;
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0
    assert(h5);
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46
    /* Short circuit the case of name == NULL => return the root group */
47
0
    if(name == NULL) {
48
0
  if(grp_ncid) {
49
0
      NC_FILE_INFO_T* file = grp->nc4_info;
50
0
            *grp_ncid = file->controller->ext_ncid | file->root_grp->hdr.id;
51
0
  }  
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0
  return NC_NOERR;
53
0
    }
54
55
    /* Normalize name. */
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0
    if ((retval = nc4_check_name(name, norm_name)))
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0
        return retval;
58
59
0
    g = (NC_GRP_INFO_T*)ncindexlookup(grp->children,norm_name);
60
0
    if(g != NULL)
61
0
    {
62
0
        if (grp_ncid)
63
0
            *grp_ncid = grp->nc4_info->controller->ext_ncid | g->hdr.id;
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0
        return NC_NOERR;
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0
    }
66
67
    /* If we got here, we didn't find the named group. */
68
0
    return NC_ENOGRP;
69
0
}
70
71
/**
72
 * @internal Given a location id, return the number of groups it
73
 * contains, and an array of their locids.
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 *
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 * @param ncid File and group ID.
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 * @param numgrps Pointer that gets number of groups. Ignored if NULL.
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 * @param ncids Pointer that gets array of ncids. Ignored if NULL.
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 *
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 * @return ::NC_NOERR No error.
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 * @return ::NC_EBADID Bad ncid.
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 * @author Ed Hartnett
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 */
83
int
84
NC4_inq_grps(int ncid, int *numgrps, int *ncids)
85
0
{
86
0
    NC_GRP_INFO_T *grp, *g;
87
0
    NC_FILE_INFO_T *h5;
88
0
    int num = 0;
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0
    int retval;
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0
    int i;
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92
0
    LOG((2, "nc_inq_grps: ncid 0x%x", ncid));
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94
    /* Find info for this file and group, and set pointer to each. */
95
0
    if ((retval = nc4_find_grp_h5(ncid, &grp, &h5)))
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0
        return retval;
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0
    assert(h5);
98
99
    /* Count the number of groups in this group. */
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0
    for(i=0;i<ncindexsize(grp->children);i++)
101
0
    {
102
0
        g = (NC_GRP_INFO_T*)ncindexith(grp->children,i);
103
0
        if(g == NULL) continue;
104
0
        if (ncids)
105
0
        {
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            /* Combine the nc_grpid in a bitwise or with the ext_ncid,
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             * which allows the returned ncid to carry both file and
108
             * group information. */
109
0
            *ncids = g->hdr.id | g->nc4_info->controller->ext_ncid;
110
0
            ncids++;
111
0
        }
112
0
        num++;
113
0
    }
114
115
0
    if (numgrps)
116
0
        *numgrps = num;
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118
0
    return NC_NOERR;
119
0
}
120
121
/**
122
 * @internal Given locid, find name of group. (Root group is named
123
 * "/".)
124
 *
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 * @param ncid File and group ID.
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 * @param name Pointer that gets name.
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 * @return ::NC_NOERR No error.
129
 * @return ::NC_EBADID Bad ncid.
130
 * @author Ed Hartnett
131
 */
132
int
133
NC4_inq_grpname(int ncid, char *name)
134
0
{
135
0
    NC_GRP_INFO_T *grp;
136
0
    NC_FILE_INFO_T *h5;
137
0
    int retval;
138
139
0
    LOG((2, "nc_inq_grpname: ncid 0x%x", ncid));
140
141
    /* Find info for this file and group, and set pointer to each. */
142
0
    if ((retval = nc4_find_grp_h5(ncid, &grp, &h5)))
143
0
        return retval;
144
0
    assert(h5);
145
146
    /* Copy the name. */
147
0
    if (name)
148
0
        strcpy(name, grp->hdr.name);
149
150
0
    return NC_NOERR;
151
0
}
152
153
/**
154
 * @internal Find the full path name to the group represented by
155
 * ncid. Either pointer argument may be NULL; pass a NULL for the
156
 * third parameter to get the length of the full path name. The length
157
 * will not include room for a null pointer.
158
 *
159
 * @param ncid File and group ID.
160
 * @param lenp Pointer that gets length of full name.
161
 * @param full_name Pointer that gets name.
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 *
163
 * @return ::NC_NOERR No error.
164
 * @return ::NC_EBADID Bad ncid.
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 * @return ::NC_ENOMEM Out of memory.
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 * @author Ed Hartnett
167
 */
168
int
169
NC4_inq_grpname_full(int ncid, size_t *lenp, char *full_name)
170
0
{
171
0
    char *name, grp_name[NC_MAX_NAME + 1];
172
0
    int g, id = ncid, parent_id, *gid;
173
0
    int i, ret = NC_NOERR;
174
175
    /* How many generations? */
176
0
    for (g = 0; !NC4_inq_grp_parent(id, &parent_id); g++, id = parent_id)
177
0
        ;
178
179
    /* Allocate storage. */
180
0
    if (!(name = malloc((g + 1) * (NC_MAX_NAME + 1) + 1)))
181
0
        return NC_ENOMEM;
182
0
    if (!(gid = malloc((g + 1) * sizeof(int))))
183
0
    {
184
0
        free(name);
185
0
        return NC_ENOMEM;
186
0
    }
187
0
    assert(name && gid);
188
189
    /* Always start with a "/" for the root group. */
190
0
    strcpy(name, NC_GROUP_NAME);
191
192
    /* Get the ncids for all generations. */
193
0
    gid[0] = ncid;
194
0
    for (i = 1; i < g && !ret; i++)
195
0
        ret = NC4_inq_grp_parent(gid[i - 1], &gid[i]);
196
197
    /* Assemble the full name. */
198
0
    for (i = g - 1; !ret && i >= 0 && !ret; i--)
199
0
    {
200
0
        if ((ret = NC4_inq_grpname(gid[i], grp_name)))
201
0
            break;
202
0
        strcat(name, grp_name);
203
0
        if (i)
204
0
            strcat(name, "/");
205
0
    }
206
207
    /* Give the user the length of the name, if he wants it. */
208
0
    if (!ret && lenp)
209
0
        *lenp = strlen(name);
210
211
    /* Give the user the name, if he wants it. */
212
0
    if (!ret && full_name)
213
0
        strcpy(full_name, name);
214
215
0
    free(gid);
216
0
    free(name);
217
218
0
    return ret;
219
0
}
220
221
/**
222
 * @internal Find the parent ncid of a group. For the root group,
223
 * return NC_ENOGRP error.  *Now* I know what kind of tinfoil hat
224
 * wearing nut job would call this function with a NULL pointer for
225
 * parent_ncid - Russ Rew!!
226
 *
227
 * @param ncid File and group ID.
228
 * @param parent_ncid Pointer that gets the ncid of parent group.
229
 *
230
 * @return ::NC_NOERR No error.
231
 * @return ::NC_EBADID Bad ncid.
232
 * @return ::NC_ENOGRP Root has no parent.
233
 * @author Ed Hartnett
234
 */
235
int
236
NC4_inq_grp_parent(int ncid, int *parent_ncid)
237
0
{
238
0
    NC_GRP_INFO_T *grp;
239
0
    NC_FILE_INFO_T *h5;
240
0
    int retval;
241
242
0
    LOG((2, "nc_inq_grp_parent: ncid 0x%x", ncid));
243
244
    /* Find info for this file and group. */
245
0
    if ((retval = nc4_find_grp_h5(ncid, &grp, &h5)))
246
0
        return retval;
247
0
    assert(h5);
248
249
    /* Set the parent ncid, if there is one. */
250
0
    if (grp->parent)
251
0
    {
252
0
        if (parent_ncid)
253
0
            *parent_ncid = grp->nc4_info->controller->ext_ncid | grp->parent->hdr.id;
254
0
    }
255
0
    else
256
0
        return NC_ENOGRP;
257
258
0
    return NC_NOERR;
259
0
}
260
261
/**
262
 * @internal Given a full name and ncid, find group ncid.
263
 *
264
 * @param ncid File and group ID.
265
 * @param full_name Full name of group.
266
 * @param grp_ncid Pointer that gets ncid of group.
267
 *
268
 * @return ::NC_NOERR No error.
269
 * @return ::NC_EBADID Bad ncid.
270
 * @return ::NC_ENOGRP Group not found.
271
 * @return ::NC_ENOMEM Out of memory.
272
 * @return ::NC_EINVAL Name is required.
273
 * @author Ed Hartnett
274
 */
275
int
276
NC4_inq_grp_full_ncid(int ncid, const char *full_name, int *grp_ncid)
277
0
{
278
0
    NC_GRP_INFO_T *grp;
279
0
    NC_FILE_INFO_T *h5;
280
0
    int id1 = ncid, id2;
281
0
    char *cp, *full_name_cpy;
282
0
    int ret;
283
284
0
    if (!full_name)
285
0
        return NC_EINVAL;
286
287
    /* Find info for this file and group, and set pointer to each. */
288
0
    if ((ret = nc4_find_grp_h5(ncid, &grp, &h5)))
289
0
        return ret;
290
0
    assert(h5);
291
292
    /* Copy full_name because strtok messes with the value it works
293
     * with, and we don't want to mess up full_name. */
294
0
    if (!(full_name_cpy = strdup(full_name)))
295
0
        return NC_ENOMEM;
296
297
    /* Get the first part of the name. */
298
0
    if (!(cp = strtok(full_name_cpy, "/")))
299
0
    {
300
        /* If "/" is passed, and this is the root group, return the root
301
         * group id. */
302
0
        if (!grp->parent)
303
0
            id2 = ncid;
304
0
        else
305
0
        {
306
0
            free(full_name_cpy);
307
0
            return NC_ENOGRP;
308
0
        }
309
0
    }
310
0
    else
311
0
    {
312
        /* Keep parsing the string. */
313
0
        for (; cp; id1 = id2)
314
0
        {
315
0
            if ((ret = NC4_inq_ncid(id1, cp, &id2)))
316
0
            {
317
0
                free(full_name_cpy);
318
0
                return ret;
319
0
            }
320
0
            cp = strtok(NULL, "/");
321
0
        }
322
0
    }
323
324
    /* Give the user the requested value. */
325
0
    if (grp_ncid)
326
0
        *grp_ncid = id2;
327
328
0
    free(full_name_cpy);
329
330
0
    return NC_NOERR;
331
0
}
332
333
/**
334
 * @internal Get a list of ids for all the variables in a group.
335
 *
336
 * @param ncid File and group ID.
337
 * @param nvars Pointer that gets number of vars in group.
338
 * @param varids Pointer that gets array of var IDs.
339
 *
340
 * @return ::NC_NOERR No error.
341
 * @return ::NC_EBADID Bad ncid.
342
 * @author Ed Hartnett
343
 */
344
int
345
NC4_inq_varids(int ncid, int *nvars, int *varids)
346
0
{
347
0
    NC_GRP_INFO_T *grp;
348
0
    NC_FILE_INFO_T *h5;
349
0
    NC_VAR_INFO_T *var;
350
0
    int num_vars = 0;
351
0
    int retval;
352
0
    int i;
353
354
0
    LOG((2, "nc_inq_varids: ncid 0x%x", ncid));
355
356
    /* Find info for this file and group, and set pointer to each. */
357
0
    if ((retval = nc4_find_grp_h5(ncid, &grp, &h5)))
358
0
        return retval;
359
0
    assert(h5);
360
361
    /* This is a netCDF-4 group. Round up them doggies and count
362
     * 'em. The list is in correct (i.e. creation) order. */
363
0
    for (i=0; i < ncindexsize(grp->vars); i++)
364
0
    {
365
0
        var = (NC_VAR_INFO_T*)ncindexith(grp->vars,i);
366
0
        if (!var) continue;
367
0
        if (varids)
368
0
            varids[num_vars] = var->hdr.id;
369
0
        num_vars++;
370
0
    }
371
372
    /* If the user wants to know how many vars in the group, tell
373
     * him. */
374
0
    if (nvars)
375
0
        *nvars = num_vars;
376
377
0
    return NC_NOERR;
378
0
}
379
380
/**
381
 * @internal This is the comparison function used for sorting dim
382
 * ids. Integer comparison: returns negative if b > a and positive if
383
 * a > b.
384
 *
385
 * @param a A pointer to an item to compare to b.
386
 * @param b A pointer to an item to compare to a.
387
 *
388
 * @return a - b
389
 * @author Ed Hartnett
390
 */
391
int int_cmp(const void *a, const void *b)
392
0
{
393
0
    const int *ia = (const int *)a;
394
0
    const int *ib = (const int *)b;
395
0
    return *ia  - *ib;
396
0
}
397
398
/**
399
 * @internal Find all dimids for a location. This finds all dimensions
400
 * in a group, with or without any of its parents, depending on last
401
 * parameter.
402
 *
403
 * @param ncid File and group ID.
404
 * @param ndims Pointer that gets number of dimensions available in group.
405
 * @param dimids Pointer that gets dim IDs.
406
 * @param include_parents If non-zero, include dimensions from parent
407
 * groups.
408
 *
409
 * @return ::NC_NOERR No error.
410
 * @return ::NC_EBADID Bad ncid.
411
 * @author Ed Hartnett
412
 */
413
int
414
NC4_inq_dimids(int ncid, int *ndims, int *dimids, int include_parents)
415
0
{
416
0
    NC_GRP_INFO_T *grp, *g;
417
0
    NC_FILE_INFO_T *h5;
418
0
    NC_DIM_INFO_T *dim;
419
0
    int num = 0;
420
0
    int retval;
421
422
0
    LOG((2, "nc_inq_dimids: ncid 0x%x include_parents: %d", ncid,
423
0
         include_parents));
424
425
    /* Find info for this file and group, and set pointer to each. */
426
0
    if ((retval = nc4_find_grp_h5(ncid, &grp, &h5)))
427
0
        return retval;
428
0
    assert(h5);
429
430
    /* First count them. */
431
0
    num = ncindexcount(grp->dim);
432
0
    if (include_parents) {
433
0
        for (g = grp->parent; g; g = g->parent)
434
0
            num += ncindexcount(g->dim);
435
0
    }
436
437
    /* If the user wants the dimension ids, get them. */
438
0
    if (dimids)
439
0
    {
440
0
        int n = 0;
441
0
        int i;
442
443
        /* Get dimension ids from this group. */
444
0
        for(i=0;i<ncindexsize(grp->dim);i++) {
445
0
            dim = (NC_DIM_INFO_T*)ncindexith(grp->dim,i);
446
0
            if(dim == NULL) continue;
447
0
            dimids[n++] = dim->hdr.id;
448
0
        }
449
450
        /* Get dimension ids from parent groups. */
451
0
        if (include_parents)
452
0
            for (g = grp->parent; g; g = g->parent) {
453
0
                for(i=0;i<ncindexsize(g->dim);i++) {
454
0
                    dim = (NC_DIM_INFO_T*)ncindexith(g->dim,i);
455
0
                    if(dim == NULL) continue;
456
0
                    dimids[n++] = dim->hdr.id;
457
0
                }
458
0
            }
459
0
        qsort(dimids, num, sizeof(int), int_cmp);
460
0
    }
461
462
    /* If the user wants the number of dims, give it. */
463
0
    if (ndims)
464
0
        *ndims = num;
465
466
0
    return NC_NOERR;
467
0
}