/src/netcdf-c/libdispatch/dvar.c
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| 1 |  | /* Copyright 2010-2018 University Corporation for Atmospheric | 
| 2 |  |    Research/Unidata. See COPYRIGHT file for more info. */ | 
| 3 |  | /** | 
| 4 |  |  * @file | 
| 5 |  |  * Functions for defining and inquiring about variables. @note The | 
| 6 |  |  * order of functions in this file affects the doxygen documentation. | 
| 7 |  |  */ | 
| 8 |  |  | 
| 9 |  | #include "config.h" | 
| 10 |  | #include "netcdf.h" | 
| 11 |  | #include "netcdf_filter.h" | 
| 12 |  | #include "ncdispatch.h" | 
| 13 |  | #include "nc4internal.h" | 
| 14 |  | #include "netcdf_f.h" | 
| 15 |  | #include "nc4internal.h" | 
| 16 |  |  | 
| 17 |  | /** | 
| 18 |  |    @defgroup variables Variables | 
| 19 |  |  | 
| 20 |  |    Variables hold multi-dimensional arrays of data. | 
| 21 |  |  | 
| 22 |  |    Variables for a netCDF dataset are defined when the dataset is | 
| 23 |  |    created, while the netCDF dataset is in define mode. Other | 
| 24 |  |    variables may be added later by reentering define mode. A netCDF | 
| 25 |  |    variable has a name, a type, and a shape, which are specified when | 
| 26 |  |    it is defined. A variable may also have values, which are | 
| 27 |  |    established later in data mode. | 
| 28 |  |  | 
| 29 |  |    Ordinarily, the name, type, and shape are fixed when the variable | 
| 30 |  |    is first defined. The name may be changed, but the type and shape | 
| 31 |  |    of a variable cannot be changed. However, a variable defined in | 
| 32 |  |    terms of the unlimited dimension can grow without bound in that | 
| 33 |  |    dimension. | 
| 34 |  |  | 
| 35 |  |    A netCDF variable in an open netCDF dataset is referred to by a | 
| 36 |  |    small integer called a variable ID. | 
| 37 |  |  | 
| 38 |  |    Variable IDs reflect the order in which variables were defined | 
| 39 |  |    within a netCDF dataset. Variable IDs are 0, 1, 2,..., in the order | 
| 40 |  |    in which the variables were defined. A function is available for | 
| 41 |  |    getting the variable ID from the variable name and vice-versa. | 
| 42 |  |  | 
| 43 |  |    @ref attributes may be associated with a variable to specify such | 
| 44 |  |    properties as units. | 
| 45 |  |  | 
| 46 |  |    Operations supported on variables are: | 
| 47 |  |    - Create a variable, given its name, data type, and shape. | 
| 48 |  |    - Get a variable ID from its name. | 
| 49 |  |    - Get a variable's name, data type, shape, and number of attributes | 
| 50 |  |    from its ID. | 
| 51 |  |    - Put a data value into a variable, given variable ID, indices, and value. | 
| 52 |  |    - Put an array of values into a variable, given variable ID, corner | 
| 53 |  |    indices, edge lengths, and a block of values. | 
| 54 |  |    - Put a subsampled or mapped array-section of values into a variable, | 
| 55 |  |    given variable ID, corner indices, edge lengths, stride vector, | 
| 56 |  |    index mapping vector, and a block of values. | 
| 57 |  |    - Get a data value from a variable, given variable ID and indices. | 
| 58 |  |    - Get an array of values from a variable, given variable ID, corner | 
| 59 |  |    indices, and edge lengths. | 
| 60 |  |    - Get a subsampled or mapped array-section of values from a variable, | 
| 61 |  |    given variable ID, corner indices, edge lengths, stride vector, and | 
| 62 |  |    index mapping vector. | 
| 63 |  |    - Rename a variable. | 
| 64 |  |  | 
| 65 |  |    @section language_types Data Types | 
| 66 |  |  | 
| 67 |  |    NetCDF supported six atomic data types through version 3.6.0 (char, | 
| 68 |  |    byte, short, int, float, and double). Starting with version 4.0, many | 
| 69 |  |    new atomic and user defined data types are supported (unsigned int | 
| 70 |  |    types, strings, compound types, variable length arrays, enums, | 
| 71 |  |    opaque). | 
| 72 |  |  | 
| 73 |  |    The additional data types are only supported in netCDF-4/HDF5 | 
| 74 |  |    files. To create netCDF-4/HDF5 files, use the ::NC_NETCDF4 flag in | 
| 75 |  |    nc_create(). | 
| 76 |  |  | 
| 77 |  |    @section classic_types NetCDF-3 Classic and 64-Bit Offset Data Types | 
| 78 |  |  | 
| 79 |  |    NetCDF-3 classic and 64-bit offset files support 6 atomic data types, | 
| 80 |  |    and none of the user defined datatype introduced in NetCDF-4. | 
| 81 |  |  | 
| 82 |  |    The following table gives the netCDF-3 external data types and the | 
| 83 |  |    corresponding type constants for defining variables in the C | 
| 84 |  |    interface: | 
| 85 |  |  | 
| 86 |  |    <table> | 
| 87 |  |    <tr><td>Type</td><td>C define</td><td>Bits</td></tr> | 
| 88 |  |    <tr><td>byte</td><td>::NC_BYTE</td><td>8</td></tr> | 
| 89 |  |    <tr><td>char</td><td>::NC_CHAR</td><td>8</td></tr> | 
| 90 |  |    <tr><td>short</td><td>::NC_SHORT</td><td>16</td></tr> | 
| 91 |  |    <tr><td>int</td><td>::NC_INT</td><td>32</td></tr> | 
| 92 |  |    <tr><td>float</td><td>::NC_FLOAT</td><td>32</td></tr> | 
| 93 |  |    <tr><td>double</td><td>::NC_DOUBLE</td><td>64</td></tr> | 
| 94 |  |    </table> | 
| 95 |  |  | 
| 96 |  |    The first column gives the netCDF external data type, which is the | 
| 97 |  |    same as the CDL data type. The next column gives the corresponding C | 
| 98 |  |    pre-processor macro for use in netCDF functions (the pre-processor | 
| 99 |  |    macros are defined in the netCDF C header-file netcdf.h). The last | 
| 100 |  |    column gives the number of bits used in the external representation of | 
| 101 |  |    values of the corresponding type. | 
| 102 |  |  | 
| 103 |  |    @section netcdf_4_atomic NetCDF-4 Atomic Data Types | 
| 104 |  |  | 
| 105 |  |    NetCDF-4 files support all of the atomic data types from netCDF-3, | 
| 106 |  |    plus additional unsigned integer types, 64-bit integer types, and a | 
| 107 |  |    string type. | 
| 108 |  |  | 
| 109 |  |    <table> | 
| 110 |  |    <tr><td>Type</td><td>C define</td><td>Bits | 
| 111 |  |  | 
| 112 |  |    <tr><td>byte</td><td>::NC_BYTE</td><td>8</td></tr> | 
| 113 |  |    <tr><td>unsigned byte </td><td>::NC_UBYTE^</td><td> 8</td></tr> | 
| 114 |  |    <tr><td>char </td><td>::NC_CHAR </td><td>8</td></tr> | 
| 115 |  |    <tr><td>short </td><td>::NC_SHORT </td><td>16</td></tr> | 
| 116 |  |    <tr><td>unsigned short </td><td>::NC_USHORT^ </td><td>16</td></tr> | 
| 117 |  |    <tr><td>int </td><td>::NC_INT </td><td>32</td></tr> | 
| 118 |  |    <tr><td>unsigned int </td><td>::NC_UINT^ </td><td>32</td></tr> | 
| 119 |  |    <tr><td>unsigned long long </td><td>::NC_UINT64^ </td><td>64</td></tr> | 
| 120 |  |    <tr><td>long long </td><td>::NC_INT64^ </td><td>64</td></tr> | 
| 121 |  |    <tr><td>float </td><td>::NC_FLOAT </td><td>32</td></tr> | 
| 122 |  |    <tr><td>double </td><td>::NC_DOUBLE </td><td>64</td></tr> | 
| 123 |  |    <tr><td>char ** </td><td>::NC_STRING^ </td><td>string length + 1</td></tr> | 
| 124 |  |    </table> | 
| 125 |  |  | 
| 126 |  |    ^This type was introduced in netCDF-4, and is not supported in netCDF | 
| 127 |  |    classic or 64-bit offset format files, or in netCDF-4 files if they | 
| 128 |  |    are created with the ::NC_CLASSIC_MODEL flags. | 
| 129 |  | */ | 
| 130 |  |  | 
| 131 |  | /** @{ */ | 
| 132 |  | /** | 
| 133 |  |    @name Defining Variables | 
| 134 |  |  | 
| 135 |  |    Use these functions to define variables. | 
| 136 |  | */ | 
| 137 |  | /*! @{ */ | 
| 138 |  |  | 
| 139 |  | /** | 
| 140 |  |    Define a new variable. | 
| 141 |  |  | 
| 142 |  |    This function adds a new variable to an open netCDF dataset or group. | 
| 143 |  |    It returns (as an argument) a variable ID, given the netCDF ID, | 
| 144 |  |    the variable name, the variable type, the number of dimensions, and a | 
| 145 |  |    list of the dimension IDs. | 
| 146 |  |  | 
| 147 |  |    @param ncid NetCDF or group ID, from a previous call to nc_open(), | 
| 148 |  |    nc_create(), nc_def_grp(), or associated inquiry functions such as | 
| 149 |  |    nc_inq_ncid(). | 
| 150 |  |    @param name Variable @ref object_name. | 
| 151 |  |    @param xtype (Data | 
| 152 |  |    type)[https://docs.unidata.ucar.edu/nug/current/md_types.html#data_type] | 
| 153 |  |    of the variable. | 
| 154 |  |    @param ndims Number of dimensions for the variable. For example, 2 | 
| 155 |  |    specifies a matrix, 1 specifies a vector, and 0 means the variable is | 
| 156 |  |    a scalar with no dimensions. Must not be negative or greater than the | 
| 157 |  |    predefined constant ::NC_MAX_VAR_DIMS. In netCDF-4/HDF5 files, may not | 
| 158 |  |    exceed the HDF5 maximum number of dimensions (32). | 
| 159 |  |    @param dimidsp Vector of ndims dimension IDs corresponding to the | 
| 160 |  |    variable dimensions. For classic model netCDF files, if the ID of the | 
| 161 |  |    unlimited dimension is included, it must be first. This argument is | 
| 162 |  |    ignored if ndims is 0. For expanded model netCDF4/HDF5 files, there | 
| 163 |  |    may be any number of unlimited dimensions, and they may be used in any | 
| 164 |  |    element of the dimids array. | 
| 165 |  |    @param varidp Pointer to location for the returned variable ID. | 
| 166 |  |  | 
| 167 |  |    @return ::NC_NOERR No error. | 
| 168 |  |    @return ::NC_EBADID Bad ncid. | 
| 169 |  |    @return ::NC_ENOTINDEFINE Not in define mode. | 
| 170 |  |    @return ::NC_ESTRICTNC3 Attempting netcdf-4 operation on strict nc3 netcdf-4 file. | 
| 171 |  |    @return ::NC_EMAXVARS NC_MAX_VARS exceeded [Not enforced after 4.5.0] | 
| 172 |  |    @return ::NC_EBADTYPE Bad type. | 
| 173 |  |    @return ::NC_EINVAL Invalid input. | 
| 174 |  |    @return ::NC_ENAMEINUSE Name already in use. | 
| 175 |  |    @return ::NC_EPERM Attempt to create object in read-only file. | 
| 176 |  |  | 
| 177 |  |    @section nc_def_var_example Example | 
| 178 |  |  | 
| 179 |  |    Here is an example using nc_def_var to create a variable named rh of | 
| 180 |  |    type double with three dimensions, time, lat, and lon in a new netCDF | 
| 181 |  |    dataset named foo.nc: | 
| 182 |  |  | 
| 183 |  |    @code | 
| 184 |  |    #include <netcdf.h> | 
| 185 |  |    ... | 
| 186 |  |    int  status; | 
| 187 |  |    int  ncid; | 
| 188 |  |    int  lat_dim, lon_dim, time_dim; | 
| 189 |  |    int  rh_id; | 
| 190 |  |    int  rh_dimids[3]; | 
| 191 |  |    ... | 
| 192 |  |    status = nc_create("foo.nc", NC_NOCLOBBER, &ncid); | 
| 193 |  |    if (status != NC_NOERR) handle_error(status); | 
| 194 |  |    ... | 
| 195 |  |  | 
| 196 |  |    status = nc_def_dim(ncid, "lat", 5L, &lat_dim); | 
| 197 |  |    if (status != NC_NOERR) handle_error(status); | 
| 198 |  |    status = nc_def_dim(ncid, "lon", 10L, &lon_dim); | 
| 199 |  |    if (status != NC_NOERR) handle_error(status); | 
| 200 |  |    status = nc_def_dim(ncid, "time", NC_UNLIMITED, &time_dim); | 
| 201 |  |    if (status != NC_NOERR) handle_error(status); | 
| 202 |  |    ... | 
| 203 |  |  | 
| 204 |  |    rh_dimids[0] = time_dim; | 
| 205 |  |    rh_dimids[1] = lat_dim; | 
| 206 |  |    rh_dimids[2] = lon_dim; | 
| 207 |  |    status = nc_def_var (ncid, "rh", NC_DOUBLE, 3, rh_dimids, &rh_id); | 
| 208 |  |    if (status != NC_NOERR) handle_error(status); | 
| 209 |  |    @endcode | 
| 210 |  |  | 
| 211 |  |    @author Glenn Davis, Ed Hartnett, Dennis Heimbigner | 
| 212 |  | */ | 
| 213 |  | int | 
| 214 |  | nc_def_var(int ncid, const char *name, nc_type xtype, | 
| 215 |  |            int ndims,  const int *dimidsp, int *varidp) | 
| 216 | 0 | { | 
| 217 | 0 |     NC* ncp; | 
| 218 | 0 |     int stat = NC_NOERR; | 
| 219 |  | 
 | 
| 220 | 0 |     if ((stat = NC_check_id(ncid, &ncp))) | 
| 221 | 0 |         return stat; | 
| 222 | 0 |     TRACE(nc_def_var); | 
| 223 | 0 |     return ncp->dispatch->def_var(ncid, name, xtype, ndims, | 
| 224 | 0 |                                   dimidsp, varidp); | 
| 225 | 0 | } | 
| 226 |  |  | 
| 227 |  | /** | 
| 228 |  |    Set the fill value for a variable. | 
| 229 |  |  | 
| 230 |  |    @note For netCDF classic, 64-bit offset, and CDF5 formats, it is | 
| 231 |  |    allowed (but not good practice) to set the fill value after data | 
| 232 |  |    have been written to the variable. In this case, unless the | 
| 233 |  |    variable has been completely specified (without gaps in the data), | 
| 234 |  |    any existing filled values will not be recognized as fill values by | 
| 235 |  |    applications reading the data. Best practice is to set the fill | 
| 236 |  |    value after the variable has been defined, but before any data have | 
| 237 |  |    been written to that variable. In NetCDF-4 files, this is enforced | 
| 238 |  |    by the HDF5 library. For netCDF-4 files, an error is returned if | 
| 239 |  |    the user attempts to set the fill value after writing data to the | 
| 240 |  |    variable. | 
| 241 |  |  | 
| 242 |  |    @param ncid NetCDF ID, from a previous call to nc_open() or | 
| 243 |  |    nc_create(). | 
| 244 |  |    @param varid Variable ID. | 
| 245 |  |    @param no_fill Set to ::NC_NOFILL to turn off fill mode for this | 
| 246 |  |    variable. Set to ::NC_FILL (the default) to turn on fill mode for | 
| 247 |  |    the variable. | 
| 248 |  |    @param fill_value the fill value to be used for this variable. Must | 
| 249 |  |    be the same type as the variable. This must point to enough free | 
| 250 |  |    memory to hold one element of the data type of the variable. (For | 
| 251 |  |    example, an ::NC_INT will require 4 bytes for it's fill value, | 
| 252 |  |    which is also an ::NC_INT.) | 
| 253 |  |  | 
| 254 |  |    @return ::NC_NOERR No error. | 
| 255 |  |    @return ::NC_EBADID Bad ID. | 
| 256 |  |    @return ::NC_ENOTINDEFINE Not in define mode.  This is returned for | 
| 257 |  |    netCDF classic, 64-bit offset, or 64-bit data files, or for | 
| 258 |  |    netCDF-4 files, when they were created with ::NC_CLASSIC_MODEL flag by | 
| 259 |  |    nc_creae(). | 
| 260 |  |    @return ::NC_EPERM Attempt to create object in read-only file. | 
| 261 |  |    @return ::NC_ELATEDEF (NetCDF-4 only). Returned when user attempts | 
| 262 |  |    to set fill value after data are written. | 
| 263 |  |    @return ::NC_EGLOBAL Attempt to set fill value on NC_GLOBAL. | 
| 264 |  |  | 
| 265 |  |    Warning: Using a vlen type as the fill value may lead to a memory | 
| 266 |  |    leak. | 
| 267 |  |  | 
| 268 |  |    @section nc_def_var_fill_example Example | 
| 269 |  |  | 
| 270 |  |    In this example from libsrc4/tst_vars.c, a variable is defined, and | 
| 271 |  |    the fill mode turned off. Then nc_inq_fill() is used to check that | 
| 272 |  |    the setting is correct. Then some data are written to the | 
| 273 |  |    variable. Since the data that are written do not cover the full | 
| 274 |  |    extent of the variable, the missing values will just be random. If | 
| 275 |  |    fill value mode was turned on, the missing values would get the | 
| 276 |  |    fill value. | 
| 277 |  |  | 
| 278 |  |    @code | 
| 279 |  |    #define DIM7_LEN 2 | 
| 280 |  |    #define DIM7_NAME "dim_7_from_Indiana" | 
| 281 |  |    #define VAR7_NAME "var_7_from_Idaho" | 
| 282 |  |    #define NDIMS 1 | 
| 283 |  |    int dimids[NDIMS]; | 
| 284 |  |    size_t index[NDIMS]; | 
| 285 |  |    int varid; | 
| 286 |  |    int no_fill; | 
| 287 |  |    unsigned short ushort_data = 42, ushort_data_in, fill_value_in; | 
| 288 |  |  | 
| 289 |  |    if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; | 
| 290 |  |    if (nc_def_dim(ncid, DIM7_NAME, DIM7_LEN, &dimids[0])) ERR; | 
| 291 |  |    if (nc_def_var(ncid, VAR7_NAME, NC_USHORT, NDIMS, dimids, | 
| 292 |  |    &varid)) ERR; | 
| 293 |  |    if (nc_def_var_fill(ncid, varid, 1, NULL)) ERR; | 
| 294 |  |  | 
| 295 |  |    if (nc_inq_var_fill(ncid, varid, &no_fill, &fill_value_in)) ERR; | 
| 296 |  |    if (!no_fill) ERR; | 
| 297 |  |  | 
| 298 |  |    index[0] = 1; | 
| 299 |  |    if (nc_put_var1_ushort(ncid, varid, index, &ushort_data)) ERR; | 
| 300 |  |  | 
| 301 |  |    index[0] = 0; | 
| 302 |  |    if (nc_get_var1_ushort(ncid, varid, index, &ushort_data_in)) ERR; | 
| 303 |  |  | 
| 304 |  |    if (nc_close(ncid)) ERR; | 
| 305 |  |    @endcode | 
| 306 |  |    @author Glenn Davis, Ed Hartnett, Dennis Heimbigner | 
| 307 |  | */ | 
| 308 |  | int | 
| 309 |  | nc_def_var_fill(int ncid, int varid, int no_fill, const void *fill_value) | 
| 310 | 0 | { | 
| 311 | 0 |     NC* ncp; | 
| 312 | 0 |     int stat = NC_check_id(ncid,&ncp); | 
| 313 | 0 |     if(stat != NC_NOERR) return stat; | 
| 314 |  |  | 
| 315 |  |     /* Using NC_GLOBAL is illegal, as this API has no provision for | 
| 316 |  |      * specifying the type of the fillvalue, it must of necessity be | 
| 317 |  |      * using the type of the variable to interpret the bytes of the | 
| 318 |  |      * fill_value argument. */ | 
| 319 | 0 |     if (varid == NC_GLOBAL) return NC_EGLOBAL; | 
| 320 |  |  | 
| 321 | 0 |     return ncp->dispatch->def_var_fill(ncid,varid,no_fill,fill_value); | 
| 322 | 0 | } | 
| 323 |  |  | 
| 324 |  | /** | 
| 325 |  |    Set the zlib compression and shuffle settings for a variable in an | 
| 326 |  |    netCDF/HDF5 file. | 
| 327 |  |  | 
| 328 |  |    This function must be called after nc_def_var and before nc_enddef | 
| 329 |  |    or any functions which writes data to the file. | 
| 330 |  |  | 
| 331 |  |    Deflation and shuffle are only available for HDF5 files. Attempting | 
| 332 |  |    to set them on non-HDF5 files will return ::NC_ENOTNC4. | 
| 333 |  |  | 
| 334 |  |    Deflation and shuffle require chunked data. If this function is | 
| 335 |  |    called on a variable with contiguous data, then the data is changed | 
| 336 |  |    to chunked data, with default chunksizes. Use nc_def_var_chunking() | 
| 337 |  |    to tune performance with user-defined chunksizes. | 
| 338 |  |  | 
| 339 |  |    If this function is called on a scalar variable, ::NC_EINVAL is | 
| 340 |  |    returned. Only chunked variables may use filters. | 
| 341 |  |  | 
| 342 |  |    Zlib compression cannot be used with szip compression. If this | 
| 343 |  |    function is called on a variable which already has szip compression | 
| 344 |  |    turned on, ::NC_EINVAL is returned. | 
| 345 |  |  | 
| 346 |  |    @note Parallel I/O reads work with compressed data. Parallel I/O | 
| 347 |  |    writes work with compressed data in netcdf-c-4.7.4 and later | 
| 348 |  |    releases, using hdf5-1.10.3 and later releases. Using the zlib, | 
| 349 |  |    shuffle (or any other) filter requires that collective access be | 
| 350 |  |    used with the variable. Turning on deflate and/or shuffle for a | 
| 351 |  |    variable in a file opened for parallel I/O will automatically | 
| 352 |  |    switch the access for that variable to collective access. | 
| 353 |  |  | 
| 354 |  |    @note The HDF5 manual has this to say about shuffle: | 
| 355 |  |     | 
| 356 |  |       The shuffle filter de-interlaces a block of data by reordering | 
| 357 |  |       the bytes. All the bytes from one consistent byte position of | 
| 358 |  |       each data element are placed together in one block; all bytes | 
| 359 |  |       from a second consistent byte position of each data element are | 
| 360 |  |       placed together a second block; etc. For example, given three | 
| 361 |  |       data elements of a 4-byte datatype stored as 012301230123, | 
| 362 |  |       shuffling will re-order data as 000111222333. This can be a | 
| 363 |  |       valuable step in an effective compression algorithm because the | 
| 364 |  |       bytes in each byte position are often closely related to each | 
| 365 |  |       other and putting them together can increase the compression | 
| 366 |  |       ratio. | 
| 367 |  |  | 
| 368 |  |       As implied above, the primary value of the shuffle filter lies | 
| 369 |  |       in its coordinated use with a compression filter; it does not | 
| 370 |  |       provide data compression when used alone. When the shuffle | 
| 371 |  |       filter is applied to a dataset immediately prior to the use of a | 
| 372 |  |       compression filter, the compression ratio achieved is often | 
| 373 |  |       superior to that achieved by the use of a compression filter | 
| 374 |  |       without the shuffle filter. | 
| 375 |  |  | 
| 376 |  |   @note The shuffle and deflate flags are ambiguous. | 
| 377 |  |  | 
| 378 |  |   In most cases, if the shuffle or deflate flag is zero, then it is interpreted | 
| 379 |  |   to mean that shuffle or deflate should not be set. However, if the variable | 
| 380 |  |   already has shuffle or deflate turned on, then it is unclear if a flag | 
| 381 |  |   value of zero means leave the state as it is, or if it means | 
| 382 |  |   that it should be turned off. Since currently no other filters can be | 
| 383 |  |   disabled, it is assumed here that a zero value means to leave the | 
| 384 |  |   state as it is. | 
| 385 |  |  | 
| 386 |  |    @param ncid NetCDF or group ID, from a previous call to nc_open(), | 
| 387 |  |    nc_create(), nc_def_grp(), or associated inquiry functions such as | 
| 388 |  |    nc_inq_ncid(). | 
| 389 |  |    @param varid Variable ID | 
| 390 |  |    @param shuffle True to turn on the shuffle filter. The shuffle | 
| 391 |  |    filter can assist with the compression of data by changing the byte | 
| 392 |  |    order in the data stream. It makes no sense to use the shuffle | 
| 393 |  |    filter without setting a deflate level. | 
| 394 |  |    @param deflate True to turn on deflation for this variable. | 
| 395 |  |    @param deflate_level A number between 0 (no compression) and 9 | 
| 396 |  |    (maximum compression). | 
| 397 |  |  | 
| 398 |  |    @return ::NC_NOERR No error. | 
| 399 |  |    @return ::NC_EBADID Bad ncid. | 
| 400 |  |    @return ::NC_ENOTVAR Invalid variable ID. | 
| 401 |  |    @return ::NC_ENOTNC4 Attempting netcdf-4 operation on file that is | 
| 402 |  |    not netCDF-4/HDF5. | 
| 403 |  |    @return ::NC_ESTRICTNC3 Attempting netcdf-4 operation on strict nc3 | 
| 404 |  |    netcdf-4 file. | 
| 405 |  |    @return ::NC_ELATEDEF Too late to change settings for this variable. | 
| 406 |  |    @return ::NC_ENOTINDEFINE Not in define mode. | 
| 407 |  |    @return ::NC_EPERM File is read only. | 
| 408 |  |    @return ::NC_ESTRICTNC3 Attempting to create netCDF-4 type var in | 
| 409 |  |    classic model file | 
| 410 |  |    @return ::NC_EHDFERR Error returned by HDF5 layer. | 
| 411 |  |    @return ::NC_EINVAL Invalid input. Deflate can't be set unless | 
| 412 |  |    variable storage is NC_CHUNK. | 
| 413 |  |  | 
| 414 |  |    @section nc_def_var_deflate_example Example | 
| 415 |  |  | 
| 416 |  |    Here is an example from /examples/C/simple_xy_nc4_wr.c using | 
| 417 |  |    nc_def_var_deflate to create a variable and then turn on the shuffle | 
| 418 |  |    filter and compression. | 
| 419 |  |  | 
| 420 |  |    @code | 
| 421 |  |    #include <netcdf.h> | 
| 422 |  |    #define NDIMS 2 | 
| 423 |  |    #define NX 6 | 
| 424 |  |    #define NY 12 | 
| 425 |  |  | 
| 426 |  |    int ncid, x_dimid, y_dimid, varid; | 
| 427 |  |    int dimids[NDIMS]; | 
| 428 |  |    int shuffle, deflate, deflate_level; | 
| 429 |  |    int data_out[NX][NY]; | 
| 430 |  |    int x, y, retval; | 
| 431 |  |  | 
| 432 |  |    shuffle = NC_SHUFFLE; | 
| 433 |  |    deflate = 1; | 
| 434 |  |    deflate_level = 1; | 
| 435 |  |    ... | 
| 436 |  |    if ((retval = nc_create(FILE_NAME, NC_NETCDF4, &ncid))) | 
| 437 |  |    ERR(retval); | 
| 438 |  |  | 
| 439 |  |    if ((retval = nc_def_dim(ncid, "x", NX, &x_dimid))) | 
| 440 |  |    ERR(retval); | 
| 441 |  |    if ((retval = nc_def_dim(ncid, "y", NY, &y_dimid))) | 
| 442 |  |    ERR(retval); | 
| 443 |  |  | 
| 444 |  |    dimids[0] = x_dimid; | 
| 445 |  |    dimids[1] = y_dimid; | 
| 446 |  |  | 
| 447 |  |    if ((retval = nc_def_var(ncid, "data", NC_INT, NDIMS, | 
| 448 |  |    dimids, &varid))) | 
| 449 |  |    ERR(retval); | 
| 450 |  |  | 
| 451 |  |    ... | 
| 452 |  |  | 
| 453 |  |    if ((retval = nc_def_var_deflate(ncid, varid, shuffle, deflate, | 
| 454 |  |    deflate_level))) | 
| 455 |  |    ERR(retval); | 
| 456 |  |    ... | 
| 457 |  |    @endcode | 
| 458 |  |    @author Ed Hartnett, Dennis Heimbigner | 
| 459 |  | */ | 
| 460 |  | int | 
| 461 |  | nc_def_var_deflate(int ncid, int varid, int shuffle, int deflate, int deflate_level) | 
| 462 | 0 | { | 
| 463 | 0 |     NC* ncp; | 
| 464 | 0 |     int stat = NC_check_id(ncid,&ncp); | 
| 465 | 0 |     if(stat != NC_NOERR) return stat; | 
| 466 | 0 |     return ncp->dispatch->def_var_deflate(ncid,varid,shuffle,deflate,deflate_level); | 
| 467 | 0 | } | 
| 468 |  |  | 
| 469 |  | /** | 
| 470 |  |    Turn on quantization for a variable. | 
| 471 |  |    | 
| 472 |  |    The data are quantized by setting unneeded bits to zeros or ones | 
| 473 |  |    so that they may compress well. BitGroom sets bits alternately to 1/0,  | 
| 474 |  |    while BitRound and Granular BitRound (GBR) round (more) bits to zeros | 
| 475 |  |    Quantization is lossy (data are irretrievably altered), and it  | 
| 476 |  |    improves the compression ratio provided by a subsequent lossless  | 
| 477 |  |    compression filter. Quantization alone will not reduce the data size. | 
| 478 |  |    Lossless compression like zlib must also be used (see nc_def_var_deflate()). | 
| 479 |  |  | 
| 480 |  |    Producers of large datasets may find that using quantize with | 
| 481 |  |    compression will result in significant improvent in the final data | 
| 482 |  |    size. | 
| 483 |  |  | 
| 484 |  |    A notable feature of all the quantization algorithms is data remain  | 
| 485 |  |    in IEEE754 format afterwards. Therefore quantization algorithms do | 
| 486 |  |    nothing when data are read. | 
| 487 |  |    | 
| 488 |  |    Quantization is only available for variables of type NC_FLOAT or | 
| 489 |  |    NC_DOUBLE. Attempts to set quantization for other variable | 
| 490 |  |    types return an error (NC_EINVAL).  | 
| 491 |  |  | 
| 492 |  |    Variables that use quantize will have added an attribute with name | 
| 493 |  |    NC_QUANTIZE_[ALGORITHM_NAME]_ATT_NAME, which will contain the  | 
| 494 |  |    number of significant digits. Users should not delete or change this | 
| 495 |  |    attribute. This is the only record that quantize has been applied | 
| 496 |  |    to the data. | 
| 497 |  |  | 
| 498 |  |    Quantization is not applied to values equal to the value of the | 
| 499 |  |    _FillValue attribute, if any. If the _FillValue attribute is not | 
| 500 |  |    set, then quantization is not applied to values matching the | 
| 501 |  |    default fill value. | 
| 502 |  |  | 
| 503 |  |    Quantization may be applied to scalar variables. | 
| 504 |  |  | 
| 505 |  |    When type conversion takes place during a write, then it occurs | 
| 506 |  |    before quantization is applied. For example, if nc_put_var_double() | 
| 507 |  |    is called on a variable of type NC_FLOAT, which has quantize | 
| 508 |  |    turned on, then the data are first converted from double to float, | 
| 509 |  |    then quantization is applied to the float values. | 
| 510 |  |  | 
| 511 |  |    As with the deflate settings, quantize settings may only be | 
| 512 |  |    modified before the first call to nc_enddef(). Once nc_enddef() is | 
| 513 |  |    called for the file, quantize settings for any variable in the file | 
| 514 |  |    may not be changed. | 
| 515 |  |   | 
| 516 |  |    Use of quantization is fully backwards compatible with existing | 
| 517 |  |    versions and packages that can read compressed netCDF data. A | 
| 518 |  |    variable which has been quantized is readable to older versions of | 
| 519 |  |    the netCDF libraries, and to netCDF-Java. | 
| 520 |  |   | 
| 521 |  |    For more information about quantization and the BitGroom filter, | 
| 522 |  |    see @ref quantize. | 
| 523 |  |  | 
| 524 |  |    @note Users new to quantization should start with Granular Bit | 
| 525 |  |    Round, which results in the best compression. The Bit Groom | 
| 526 |  |    algorithm is not as effective when compressing, but is faster than | 
| 527 |  |    Granular Bit Round. The Bit Round algorithm accepts a number of | 
| 528 |  |    bits to maintain, rather than a number of decimal digits, and is | 
| 529 |  |    provided for users who are already performing some bit-based | 
| 530 |  |    quantization, and wish to turn this task over to the netCDF | 
| 531 |  |    library. | 
| 532 |  |  | 
| 533 |  |    @param ncid File ID. | 
| 534 |  |    @param varid Variable ID. ::NC_GLOBAL may not be used. | 
| 535 |  |    @param quantize_mode Quantization mode. May be ::NC_NOQUANTIZE or | 
| 536 |  |    ::NC_QUANTIZE_BITGROOM or ::NC_QUANTIZE_GRANULARBR or | 
| 537 |  |    ::NC_QUANTIZE_BITROUND. | 
| 538 |  |    @param nsd Number of significant digits (either decimal or binary).  | 
| 539 |  |    May be any integer from 1 to ::NC_QUANTIZE_MAX_FLOAT_NSD (for variables  | 
| 540 |  |    of type ::NC_FLOAT) or ::NC_QUANTIZE_MAX_DOUBLE_NSD (for variables  | 
| 541 |  |    of type ::NC_DOUBLE) for mode ::NC_QUANTIZE_BITGROOM and mode | 
| 542 |  |    ::NC_QUANTIZE_GRANULARBR. May be any integer from 1 to  | 
| 543 |  |    ::NC_QUANTIZE_MAX_FLOAT_NSB (for variables of type ::NC_FLOAT) or  | 
| 544 |  |    ::NC_QUANTIZE_MAX_DOUBLE_NSB (for variables of type ::NC_DOUBLE)  | 
| 545 |  |    for mode ::NC_QUANTIZE_BITROUND. Ignored if quantize_mode = NC_NOQUANTIZE. | 
| 546 |  |     | 
| 547 |  |    @return ::NC_NOERR No error. | 
| 548 |  |    @return ::NC_EGLOBAL Can't use ::NC_GLOBAL with this function. | 
| 549 |  |    @return ::NC_EBADID Bad ncid. | 
| 550 |  |    @return ::NC_ENOTVAR Invalid variable ID. | 
| 551 |  |    @return ::NC_ENOTNC4 Attempting netcdf-4 operation on file that is | 
| 552 |  |    not netCDF-4/HDF5. | 
| 553 |  |    @return ::NC_ESTRICTNC3 Attempting netcdf-4 operation on strict nc3 | 
| 554 |  |    netcdf-4 file. | 
| 555 |  |    @return ::NC_ELATEDEF Too late to change settings for this variable. | 
| 556 |  |    @return ::NC_EINVAL Invalid input. | 
| 557 |  |    @author Charlie Zender, Ed Hartnett | 
| 558 |  |  */ | 
| 559 |  | int | 
| 560 |  | nc_def_var_quantize(int ncid, int varid, int quantize_mode, int nsd) | 
| 561 | 0 | { | 
| 562 | 0 |     NC* ncp; | 
| 563 | 0 |     int stat = NC_check_id(ncid,&ncp); | 
| 564 | 0 |     if(stat != NC_NOERR) return stat; | 
| 565 |  |  | 
| 566 |  |     /* Using NC_GLOBAL is illegal. */ | 
| 567 | 0 |     if (varid == NC_GLOBAL) return NC_EGLOBAL; | 
| 568 | 0 |     return ncp->dispatch->def_var_quantize(ncid,varid,quantize_mode,nsd); | 
| 569 | 0 | } | 
| 570 |  |  | 
| 571 |  | /** | 
| 572 |  |    Set checksum for a var. | 
| 573 |  |  | 
| 574 |  |    This function must be called after nc_def_var and before nc_enddef | 
| 575 |  |    or any functions which writes data to the file. | 
| 576 |  |  | 
| 577 |  |    Checksums require chunked data. If this function is called on a | 
| 578 |  |    variable with contiguous data, then the data is changed to chunked | 
| 579 |  |    data, with default chunksizes. Use nc_def_var_chunking() to tune | 
| 580 |  |    performance with user-defined chunksizes. | 
| 581 |  |  | 
| 582 |  |    @note Parallel I/O reads work with fletcher32 encoded | 
| 583 |  |    data. Parallel I/O writes work with fletcher32 in netcdf-c-4.7.4 | 
| 584 |  |    and later releases, using hdf5-1.10.2 and later releases. Using the | 
| 585 |  |    fletcher32 (or any) filter requires that collective access be used | 
| 586 |  |    with the variable. Turning on fletcher32 for a variable in a file | 
| 587 |  |    opened for parallel I/O will automatically switch the access for | 
| 588 |  |    that variable to collective access. | 
| 589 |  |  | 
| 590 |  |    @param ncid NetCDF or group ID, from a previous call to nc_open(), | 
| 591 |  |    nc_create(), nc_def_grp(), or associated inquiry functions such as | 
| 592 |  |    nc_inq_ncid(). | 
| 593 |  |    @param varid Variable ID | 
| 594 |  |    @param fletcher32 True to turn on Fletcher32 checksums for this | 
| 595 |  |    variable. | 
| 596 |  |  | 
| 597 |  |    @return ::NC_NOERR No error. | 
| 598 |  |    @return ::NC_EBADID Bad ncid. | 
| 599 |  |    @return ::NC_ENOTVAR Invalid variable ID. | 
| 600 |  |    @return ::NC_ENOTNC4 Attempting netcdf-4 operation on file that is | 
| 601 |  |    not netCDF-4/HDF5. | 
| 602 |  |    @return ::NC_ESTRICTNC3 Attempting netcdf-4 operation on strict nc3 | 
| 603 |  |    netcdf-4 file. | 
| 604 |  |    @return ::NC_ELATEDEF Too late to change settings for this variable. | 
| 605 |  |    @return ::NC_EINVAL Invalid input | 
| 606 |  |    @author Ed Hartnett, Dennis Heimbigner | 
| 607 |  | */ | 
| 608 |  | int | 
| 609 |  | nc_def_var_fletcher32(int ncid, int varid, int fletcher32) | 
| 610 | 0 | { | 
| 611 | 0 |     NC* ncp; | 
| 612 | 0 |     int stat = NC_check_id(ncid,&ncp); | 
| 613 | 0 |     if(stat != NC_NOERR) return stat; | 
| 614 | 0 |     return ncp->dispatch->def_var_fletcher32(ncid,varid,fletcher32); | 
| 615 | 0 | } | 
| 616 |  |  | 
| 617 |  | /** | 
| 618 |  |    Define storage and, if chunked storage is used, chunking parameters | 
| 619 |  |    for a variable | 
| 620 |  |  | 
| 621 |  |    The storage may be set to NC_CONTIGUOUS, NC_COMPACT, or NC_CHUNKED. | 
| 622 |  |  | 
| 623 |  |    Contiguous storage means the variable is stored as one block of | 
| 624 |  |    data in the file. This is the default storage. | 
| 625 |  |  | 
| 626 |  |    Compact storage means the variable is stored in the header record | 
| 627 |  |    of the file. This can have large performance benefits on HPC system | 
| 628 |  |    running many processors. Compact storage is only available for | 
| 629 |  |    variables whose data are 64 KB or less. Attempting to turn on | 
| 630 |  |    compact storage for a variable that is too large will result in the | 
| 631 |  |    ::NC_EVARSIZE error. | 
| 632 |  |  | 
| 633 |  |    Chunked storage means the data are stored as chunks, of | 
| 634 |  |    user-configurable size. Chunked storage is required for variable | 
| 635 |  |    with one or more unlimted dimensions, or variable which use | 
| 636 |  |    compression, or any other filter. | 
| 637 |  |  | 
| 638 |  |    The total size of a chunk must be less than 4 GiB. That is, the | 
| 639 |  |    product of all chunksizes and the size of the data (or the size of | 
| 640 |  |    nc_vlen_t for VLEN types) must be less than 4 GiB. | 
| 641 |  |  | 
| 642 |  |    This function may only be called after the variable is defined, but | 
| 643 |  |    before nc_enddef is called. Once the chunking parameters are set for a | 
| 644 |  |    variable, they cannot be changed. | 
| 645 |  |  | 
| 646 |  |    @note Scalar variables may have a storage of NC_CONTIGUOUS or | 
| 647 |  |    NC_COMPACT. Attempts to set chunking on a scalare variable will | 
| 648 |  |    cause ::NC_EINVAL to be returned. Only non-scalar variables can | 
| 649 |  |    have chunking. | 
| 650 |  |  | 
| 651 |  |    @param ncid NetCDF ID, from a previous call to nc_open() or | 
| 652 |  |    nc_create(). | 
| 653 |  |    @param varid Variable ID. | 
| 654 |  |    @param storage If ::NC_CONTIGUOUS or ::NC_COMPACT, then contiguous | 
| 655 |  |    or compact storage is used for this variable. Variables with one or | 
| 656 |  |    more unlimited dimensions cannot use contiguous or compact | 
| 657 |  |    storage. If contiguous or compact storage is turned on, the | 
| 658 |  |    chunksizes parameter is ignored. If ::NC_CHUNKED, then chunked | 
| 659 |  |    storage is used for this variable. Chunk sizes may be specified | 
| 660 |  |    with the chunksizes parameter or default sizes will be used if that | 
| 661 |  |    parameter is NULL. | 
| 662 |  |    @param chunksizesp A pointer to an array list of chunk sizes. The | 
| 663 |  |    array must have one chunksize for each dimension of the variable. If | 
| 664 |  |    ::NC_CONTIGUOUS storage is set, then the chunksizes parameter is | 
| 665 |  |    ignored. Ignored if NULL. | 
| 666 |  |  | 
| 667 |  |    @return ::NC_NOERR No error. | 
| 668 |  |    @return ::NC_EBADID Bad ID. | 
| 669 |  |    @return ::NC_ENOTNC4 Not a netCDF-4 file. | 
| 670 |  |    @return ::NC_ELATEDEF This variable has already been the subject of | 
| 671 |  |    a nc_enddef call.  In netCDF-4 files nc_enddef will be called | 
| 672 |  |    automatically for any data read or write. Once nc_enddef has been | 
| 673 |  |    called after the nc_def_var call for a variable, it is impossible | 
| 674 |  |    to set the chunking for that variable. | 
| 675 |  |    @return ::NC_ENOTINDEFINE Not in define mode.  This is returned for | 
| 676 |  |    netCDF classic or 64-bit offset files, or for netCDF-4 files, when | 
| 677 |  |    they wwere created with ::NC_CLASSIC_MODEL flag by nc_create(). | 
| 678 |  |    @return ::NC_EPERM Attempt to create object in read-only file. | 
| 679 |  |    @return ::NC_EBADCHUNK Returns if the chunk size specified for a | 
| 680 |  |    variable is larger than the length of the dimensions associated with | 
| 681 |  |    variable. | 
| 682 |  |    @return ::NC_EVARSIZE Compact storage attempted for variable bigger | 
| 683 |  |    than 64 KB. | 
| 684 |  |    @return ::NC_EINVAL Attempt to set contiguous or compact storage | 
| 685 |  |    for var with one or more unlimited dimensions, or chunking for a | 
| 686 |  |    scalar var. | 
| 687 |  |  | 
| 688 |  |    @section nc_def_var_chunking_example Example | 
| 689 |  |  | 
| 690 |  |    In this example from libsrc4/tst_vars2.c, chunksizes are set with | 
| 691 |  |    nc_var_def_chunking, and checked with nc_var_inq_chunking. | 
| 692 |  |  | 
| 693 |  |    @code | 
| 694 |  |    printf("**** testing chunking..."); | 
| 695 |  |    { | 
| 696 |  |    #define NDIMS5 1 | 
| 697 |  |    #define DIM5_NAME "D5" | 
| 698 |  |    #define VAR_NAME5 "V5" | 
| 699 |  |    #define DIM5_LEN 1000 | 
| 700 |  |  | 
| 701 |  |    int dimids[NDIMS5], dimids_in[NDIMS5]; | 
| 702 |  |    int varid; | 
| 703 |  |    int ndims, nvars, natts, unlimdimid; | 
| 704 |  |    nc_type xtype_in; | 
| 705 |  |    char name_in[NC_MAX_NAME + 1]; | 
| 706 |  |    int data[DIM5_LEN], data_in[DIM5_LEN]; | 
| 707 |  |    size_t chunksize[NDIMS5] = {5}; | 
| 708 |  |    size_t chunksize_in[NDIMS5]; | 
| 709 |  |    int storage_in; | 
| 710 |  |    int i, d; | 
| 711 |  |  | 
| 712 |  |    for (i = 0; i < DIM5_LEN; i++) | 
| 713 |  |    data[i] = i; | 
| 714 |  |  | 
| 715 |  |    if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; | 
| 716 |  |    if (nc_def_dim(ncid, DIM5_NAME, DIM5_LEN, &dimids[0])) ERR; | 
| 717 |  |    if (nc_def_var(ncid, VAR_NAME5, NC_INT, NDIMS5, dimids, &varid)) ERR; | 
| 718 |  |    if (nc_def_var_chunking(ncid, varid, NC_CHUNKED, chunksize)) ERR; | 
| 719 |  |    if (nc_put_var_int(ncid, varid, data)) ERR; | 
| 720 |  |  | 
| 721 |  |    if (nc_inq_var_chunking(ncid, varid, &storage_in, chunksize_in)) ERR; | 
| 722 |  |    for (d = 0; d < NDIMS5; d++) | 
| 723 |  |    if (chunksize[d] != chunksize_in[d]) ERR; | 
| 724 |  |    if (storage_in != NC_CHUNKED) ERR; | 
| 725 |  |    @endcode | 
| 726 |  |    @author Ed Hartnett, Dennis Heimbigner | 
| 727 |  | */ | 
| 728 |  | int | 
| 729 |  | nc_def_var_chunking(int ncid, int varid, int storage, const size_t *chunksizesp) | 
| 730 | 0 | { | 
| 731 | 0 |     NC* ncp; | 
| 732 | 0 |     int stat = NC_check_id(ncid, &ncp); | 
| 733 | 0 |     if(stat != NC_NOERR) return stat; | 
| 734 | 0 |     return ncp->dispatch->def_var_chunking(ncid, varid, storage, | 
| 735 | 0 |                                            chunksizesp); | 
| 736 | 0 | } | 
| 737 |  |  | 
| 738 |  | /** | 
| 739 |  |    Define endianness of a variable. | 
| 740 |  |  | 
| 741 |  |    With this function the endianness (i.e. order of bits in integers) can | 
| 742 |  |    be changed on a per-variable basis. By default, the endianness is the | 
| 743 |  |    same as the default endianness of the platform. But with | 
| 744 |  |    nc_def_var_endianness the endianness can be explicitly set for a | 
| 745 |  |    variable. | 
| 746 |  |  | 
| 747 |  |    Warning: this function is only defined if the type of the variable | 
| 748 |  |    is an atomic integer or float type. | 
| 749 |  |  | 
| 750 |  |    This function may only be called after the variable is defined, but | 
| 751 |  |    before nc_enddef is called. | 
| 752 |  |  | 
| 753 |  |    @param ncid NetCDF ID, from a previous call to nc_open() or | 
| 754 |  |    nc_create(). | 
| 755 |  |  | 
| 756 |  |    @param varid Variable ID. | 
| 757 |  |  | 
| 758 |  |    @param endian ::NC_ENDIAN_NATIVE to select the native endianness of | 
| 759 |  |    the platform (the default), ::NC_ENDIAN_LITTLE to use | 
| 760 |  |    little-endian, ::NC_ENDIAN_BIG to use big-endian. | 
| 761 |  |  | 
| 762 |  |    @return ::NC_NOERR No error. | 
| 763 |  |    @return ::NC_EBADID Bad ID. | 
| 764 |  |    @return ::NC_ENOTNC4 Not a netCDF-4 file. | 
| 765 |  |    @return ::NC_ELATEDEF This variable has already been the subject of a | 
| 766 |  |    nc_enddef call. In netCDF-4 files nc_enddef will be called | 
| 767 |  |    automatically for any data read or write. Once nc_enddef has been | 
| 768 |  |    called after the nc_def_var call for a variable, it is impossible to | 
| 769 |  |    set the chunking for that variable. | 
| 770 |  |    @return ::NC_ENOTINDEFINE Not in define mode. This is returned for | 
| 771 |  |    netCDF classic or 64-bit offset files, or for netCDF-4 files, when | 
| 772 |  |    they wwere created with ::NC_CLASSIC_MODEL flag by nc_create(). | 
| 773 |  |    @return ::NC_EPERM Attempt to create object in read-only file. | 
| 774 |  |  | 
| 775 |  |    @section nc_def_var_endian_example Example | 
| 776 |  |  | 
| 777 |  |    In this example from libsrc4/tst_vars2.c, a variable is created, and | 
| 778 |  |    the endianness set to ::NC_ENDIAN_BIG. | 
| 779 |  |  | 
| 780 |  |    @code | 
| 781 |  |    #define NDIMS4 1 | 
| 782 |  |    #define DIM4_NAME "Joe" | 
| 783 |  |    #define VAR_NAME4 "Ed" | 
| 784 |  |    #define DIM4_LEN 10 | 
| 785 |  |    { | 
| 786 |  |    int dimids[NDIMS4], dimids_in[NDIMS4]; | 
| 787 |  |    int varid; | 
| 788 |  |    int ndims, nvars, natts, unlimdimid; | 
| 789 |  |    nc_type xtype_in; | 
| 790 |  |    char name_in[NC_MAX_NAME + 1]; | 
| 791 |  |    int data[DIM4_LEN], data_in[DIM4_LEN]; | 
| 792 |  |    int endian_in; | 
| 793 |  |    int i; | 
| 794 |  |  | 
| 795 |  |    for (i = 0; i < DIM4_LEN; i++) | 
| 796 |  |    data[i] = i; | 
| 797 |  |  | 
| 798 |  |    if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; | 
| 799 |  |    if (nc_def_dim(ncid, DIM4_NAME, DIM4_LEN, &dimids[0])) ERR; | 
| 800 |  |    if (dimids[0] != 0) ERR; | 
| 801 |  |    if (nc_def_var(ncid, VAR_NAME4, NC_INT, NDIMS4, dimids, &varid)) ERR; | 
| 802 |  |    if (nc_def_var_endian(ncid, varid, NC_ENDIAN_BIG)) ERR; | 
| 803 |  |    @endcode | 
| 804 |  |    @author Ed Hartnett | 
| 805 |  | */ | 
| 806 |  | int | 
| 807 |  | nc_def_var_endian(int ncid, int varid, int endian) | 
| 808 | 0 | { | 
| 809 | 0 |     NC* ncp; | 
| 810 | 0 |     int stat = NC_check_id(ncid,&ncp); | 
| 811 | 0 |     if(stat != NC_NOERR) return stat; | 
| 812 | 0 |     return ncp->dispatch->def_var_endian(ncid,varid,endian); | 
| 813 | 0 | } | 
| 814 |  |  | 
| 815 |  | /** | 
| 816 |  |  * Set szip compression settings on a variable. Szip is an | 
| 817 |  |  * implementation of the extended-Rice lossless compression algorithm; | 
| 818 |  |  * it is reported to provide fast and effective compression. Szip is | 
| 819 |  |  * only available to netCDF if HDF5 was built with szip support. | 
| 820 |  |  * | 
| 821 |  |  * SZIP compression cannot be applied to variables with any | 
| 822 |  |  * user-defined type. | 
| 823 |  |  * | 
| 824 |  |  * If zlib compression has already be turned on for a variable, then | 
| 825 |  |  * this function will return ::NC_EINVAL. | 
| 826 |  |  * | 
| 827 |  |  * To learn the szip settings for a variable, use nc_inq_var_szip(). | 
| 828 |  |  * | 
| 829 |  |  * @note The options_mask parameter may be either ::NC_SZIP_EC (entropy | 
| 830 |  |  * coding) or ::NC_SZIP_NN (nearest neighbor): | 
| 831 |  |  * * The entropy coding method is best suited for data that has been | 
| 832 |  |  * processed. The EC method works best for small numbers. | 
| 833 |  |  * * The nearest neighbor coding method preprocesses the data then the | 
| 834 |  |  * applies EC method as above. | 
| 835 |  |  * | 
| 836 |  |  * For more information about HDF5 and szip, see | 
| 837 |  |  * https://support.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetSzip | 
| 838 |  |  * and | 
| 839 |  |  * https://support.hdfgroup.org/doc_resource/SZIP/index.html. | 
| 840 |  |  * | 
| 841 |  |  * @param ncid File ID. | 
| 842 |  |  * @param varid Variable ID. | 
| 843 |  |  * @param options_mask The options mask. Can be ::NC_SZIP_EC or | 
| 844 |  |  * ::NC_SZIP_NN. | 
| 845 |  |  * @param pixels_per_block Pixels per block. Must be even and not | 
| 846 |  |  * greater than 32, with typical values being 8, 10, 16, or 32. This | 
| 847 |  |  * parameter affects compression ratio; the more pixel values vary, | 
| 848 |  |  * the smaller this number should be to achieve better performance. If | 
| 849 |  |  * pixels_per_block is bigger than the total number of elements in a | 
| 850 |  |  * dataset chunk, ::NC_EINVAL will be returned. | 
| 851 |  |  * | 
| 852 |  |  * @returns ::NC_NOERR No error. | 
| 853 |  |  * @returns ::NC_EBADID Bad ncid. | 
| 854 |  |  * @returns ::NC_ENOTVAR Invalid variable ID. | 
| 855 |  |  * @returns ::NC_ENOTNC4 Attempting netcdf-4 operation on file that is | 
| 856 |  |  * not netCDF-4/HDF5. | 
| 857 |  |  * @returns ::NC_ELATEDEF Too late to change settings for this variable. | 
| 858 |  |  * @returns ::NC_ENOTINDEFINE Not in define mode. | 
| 859 |  |  * @returns ::NC_EINVAL Invalid input, or zlib filter already applied | 
| 860 |  |  * to this var. | 
| 861 |  |  * @author Ed Hartnett | 
| 862 |  |  */ | 
| 863 |  | int | 
| 864 |  | nc_def_var_szip(int ncid, int varid, int options_mask, int pixels_per_block) | 
| 865 | 0 | { | 
| 866 | 0 |     int ret; | 
| 867 |  |  | 
| 868 |  |     /* This will cause H5Pset_szip to be called when the var is | 
| 869 |  |      * created. */ | 
| 870 | 0 |     unsigned int params[2] = {(unsigned int)options_mask, (unsigned int)pixels_per_block}; | 
| 871 | 0 |     if ((ret = nc_def_var_filter(ncid, varid, H5Z_FILTER_SZIP, 2, params))) | 
| 872 | 0 |         return ret; | 
| 873 |  |  | 
| 874 | 0 |     return NC_NOERR; | 
| 875 | 0 | } | 
| 876 |  |  | 
| 877 |  | /** @} */ | 
| 878 |  |  | 
| 879 |  | /** | 
| 880 |  |    @name Rename a Variable | 
| 881 |  |  | 
| 882 |  |    Rename a variable. | 
| 883 |  | */ | 
| 884 |  | /** @{ */ | 
| 885 |  |  | 
| 886 |  | /** | 
| 887 |  |    Rename a variable. | 
| 888 |  |  | 
| 889 |  |    This function changes the name of a netCDF variable in an open netCDF | 
| 890 |  |    file or group. You cannot rename a variable to have the name of any existing | 
| 891 |  |    variable. | 
| 892 |  |  | 
| 893 |  |    For classic format, 64-bit offset format, and netCDF-4/HDF5 with | 
| 894 |  |    classic mode, if the new name is longer than the old name, the netCDF | 
| 895 |  |    dataset must be in define mode. | 
| 896 |  |  | 
| 897 |  |    For netCDF-4/HDF5 files, renaming the variable changes the order of | 
| 898 |  |    the variables in the file. The renamed variable becomes the last | 
| 899 |  |    variable in the file. | 
| 900 |  |  | 
| 901 |  |    @param ncid NetCDF or group ID, from a previous call to nc_open(), | 
| 902 |  |    nc_create(), nc_def_grp(), or associated inquiry functions such as | 
| 903 |  |    nc_inq_ncid(). | 
| 904 |  |  | 
| 905 |  |    @param varid Variable ID | 
| 906 |  |  | 
| 907 |  |    @param name New name of the variable. | 
| 908 |  |  | 
| 909 |  |    @return ::NC_NOERR No error. | 
| 910 |  |    @return ::NC_EBADID Bad ncid. | 
| 911 |  |    @return ::NC_ENOTVAR Invalid variable ID. | 
| 912 |  |    @return ::NC_EBADNAME Bad name. | 
| 913 |  |    @return ::NC_EMAXNAME Name is too long. | 
| 914 |  |    @return ::NC_ENAMEINUSE Name in use. | 
| 915 |  |    @return ::NC_ENOMEM Out of memory. | 
| 916 |  |  | 
| 917 |  |    @section nc_rename_var_example Example | 
| 918 |  |  | 
| 919 |  |    Here is an example using nc_rename_var to rename the variable rh to | 
| 920 |  |    rel_hum in an existing netCDF dataset named foo.nc: | 
| 921 |  |  | 
| 922 |  |    @code | 
| 923 |  |    #include <netcdf.h> | 
| 924 |  |    ... | 
| 925 |  |    int  status; | 
| 926 |  |    int  ncid; | 
| 927 |  |    int  rh_id; | 
| 928 |  |    ... | 
| 929 |  |    status = nc_open("foo.nc", NC_WRITE, &ncid); | 
| 930 |  |    if (status != NC_NOERR) handle_error(status); | 
| 931 |  |    ... | 
| 932 |  |    status = nc_redef(ncid); | 
| 933 |  |    if (status != NC_NOERR) handle_error(status); | 
| 934 |  |    status = nc_inq_varid (ncid, "rh", &rh_id); | 
| 935 |  |    if (status != NC_NOERR) handle_error(status); | 
| 936 |  |    status = nc_rename_var (ncid, rh_id, "rel_hum"); | 
| 937 |  |    if (status != NC_NOERR) handle_error(status); | 
| 938 |  |    status = nc_enddef(ncid); | 
| 939 |  |    if (status != NC_NOERR) handle_error(status); | 
| 940 |  |    @endcode | 
| 941 |  |    @author Glenn Davis, Ed Hartnett, Dennis Heimbigner | 
| 942 |  | */ | 
| 943 |  | int | 
| 944 |  | nc_rename_var(int ncid, int varid, const char *name) | 
| 945 | 0 | { | 
| 946 | 0 |     NC* ncp; | 
| 947 | 0 |     int stat = NC_check_id(ncid, &ncp); | 
| 948 | 0 |     if(stat != NC_NOERR) return stat; | 
| 949 | 0 |     TRACE(nc_rename_var); | 
| 950 | 0 |     return ncp->dispatch->rename_var(ncid, varid, name); | 
| 951 | 0 | } | 
| 952 |  | /** @} */ | 
| 953 |  |  | 
| 954 |  | /** | 
| 955 |  |    @internal Does a variable have a record dimension? | 
| 956 |  |  | 
| 957 |  |    @param ncid File ID. | 
| 958 |  |    @param varid Variable ID. | 
| 959 |  |    @param nrecs Pointer that gets number of records. | 
| 960 |  |  | 
| 961 |  |    @return 0 if not a record var, 1 if it is. | 
| 962 |  | */ | 
| 963 |  | int | 
| 964 |  | NC_is_recvar(int ncid, int varid, size_t* nrecs) | 
| 965 | 0 | { | 
| 966 | 0 |     int status = NC_NOERR; | 
| 967 | 0 |     int unlimid; | 
| 968 | 0 |     int ndims; | 
| 969 | 0 |     int dimset[NC_MAX_VAR_DIMS]; | 
| 970 |  | 
 | 
| 971 | 0 |     status = nc_inq_unlimdim(ncid,&unlimid); | 
| 972 | 0 |     if(status != NC_NOERR) return 0; /* no unlimited defined */ | 
| 973 | 0 |     status = nc_inq_varndims(ncid,varid,&ndims); | 
| 974 | 0 |     if(status != NC_NOERR) return 0; /* no unlimited defined */ | 
| 975 | 0 |     if(ndims == 0) return 0; /* scalar */ | 
| 976 | 0 |     status = nc_inq_vardimid(ncid,varid,dimset); | 
| 977 | 0 |     if(status != NC_NOERR) return 0; /* no unlimited defined */ | 
| 978 | 0 |     status = nc_inq_dim(ncid,dimset[0],NULL,nrecs); | 
| 979 | 0 |     if(status != NC_NOERR) return 0; | 
| 980 | 0 |     return (dimset[0] == unlimid ? 1: 0); | 
| 981 | 0 | } | 
| 982 |  |  | 
| 983 |  | /** | 
| 984 |  |    @internal Get the number of record dimensions for a variable and an | 
| 985 |  |    array that identifies which of a variable's dimensions are record | 
| 986 |  |    dimensions. Intended to be used instead of NC_is_recvar(), which | 
| 987 |  |    doesn't work for netCDF-4 variables which have multiple unlimited | 
| 988 |  |    dimensions or an unlimited dimension that is not the first of a | 
| 989 |  |    variable's dimensions. | 
| 990 |  |  | 
| 991 |  |    @param ncid File ID. | 
| 992 |  |    @param varid Variable ID. | 
| 993 |  |    @param nrecdimsp Pointer that gets number of record dims. | 
| 994 |  |    @param is_recdim Pointer that gets 1 if there is one or more record | 
| 995 |  |    dimensions, 0 if not. | 
| 996 |  |  | 
| 997 |  |    @return 0 if not a record var, 1 if it is. | 
| 998 |  |  | 
| 999 |  |    Example use: | 
| 1000 |  |    @code | 
| 1001 |  |    int nrecdims; | 
| 1002 |  |    int is_recdim[NC_MAX_VAR_DIMS]; | 
| 1003 |  |    ... | 
| 1004 |  |    status = NC_inq_recvar(ncid,varid,&nrecdims,is_recdim); | 
| 1005 |  |    isrecvar = (nrecdims > 0); | 
| 1006 |  |    @endcode | 
| 1007 |  | */ | 
| 1008 |  | int | 
| 1009 |  | NC_inq_recvar(int ncid, int varid, int* nrecdimsp, int *is_recdim) | 
| 1010 | 0 | { | 
| 1011 | 0 |     int status = NC_NOERR; | 
| 1012 | 0 |     int unlimid; | 
| 1013 | 0 |     int nvardims; | 
| 1014 | 0 |     int dimset[NC_MAX_VAR_DIMS]; | 
| 1015 | 0 |     int dim; | 
| 1016 | 0 |     int nrecdims = 0; | 
| 1017 |  | 
 | 
| 1018 | 0 |     status = nc_inq_varndims(ncid,varid,&nvardims); | 
| 1019 | 0 |     if(status != NC_NOERR) return status; | 
| 1020 | 0 |     if(nvardims == 0) return NC_NOERR; /* scalars have no dims */ | 
| 1021 | 0 |     for(dim = 0; dim < nvardims; dim++) | 
| 1022 | 0 |         is_recdim[dim] = 0; | 
| 1023 | 0 |     status = nc_inq_unlimdim(ncid, &unlimid); | 
| 1024 | 0 |     if(status != NC_NOERR) return status; | 
| 1025 | 0 |     if(unlimid == -1) return status; /* no unlimited dims for any variables */ | 
| 1026 | 0 | #ifdef USE_NETCDF4 | 
| 1027 | 0 |     { | 
| 1028 | 0 |         int nunlimdims; | 
| 1029 | 0 |         int *unlimids; | 
| 1030 | 0 |         int recdim; | 
| 1031 | 0 |         status = nc_inq_unlimdims(ncid, &nunlimdims, NULL); /* for group or file, not variable */ | 
| 1032 | 0 |         if(status != NC_NOERR) return status; | 
| 1033 | 0 |         if(nunlimdims == 0) return status; | 
| 1034 |  |  | 
| 1035 | 0 |         if (!(unlimids = malloc((size_t)nunlimdims * sizeof(int)))) | 
| 1036 | 0 |             return NC_ENOMEM; | 
| 1037 | 0 |         status = nc_inq_unlimdims(ncid, &nunlimdims, unlimids); /* for group or file, not variable */ | 
| 1038 | 0 |         if(status != NC_NOERR) { | 
| 1039 | 0 |             free(unlimids); | 
| 1040 | 0 |             return status; | 
| 1041 | 0 |         } | 
| 1042 | 0 |         status = nc_inq_vardimid(ncid, varid, dimset); | 
| 1043 | 0 |         if(status != NC_NOERR) { | 
| 1044 | 0 |             free(unlimids); | 
| 1045 | 0 |             return status; | 
| 1046 | 0 |         } | 
| 1047 | 0 |         for (dim = 0; dim < nvardims; dim++) { /* netCDF-4 rec dims need not be first dim for a rec var */ | 
| 1048 | 0 |             for(recdim = 0; recdim < nunlimdims; recdim++) { | 
| 1049 | 0 |                 if(dimset[dim] == unlimids[recdim]) { | 
| 1050 | 0 |                     is_recdim[dim] = 1; | 
| 1051 | 0 |                     nrecdims++; | 
| 1052 | 0 |                 } | 
| 1053 | 0 |             } | 
| 1054 | 0 |         } | 
| 1055 | 0 |         free(unlimids); | 
| 1056 | 0 |     } | 
| 1057 |  | #else | 
| 1058 |  |     status = nc_inq_vardimid(ncid, varid, dimset); | 
| 1059 |  |     if(status != NC_NOERR) return status; | 
| 1060 |  |     if(dimset[0] == unlimid) { | 
| 1061 |  |         is_recdim[0] = 1; | 
| 1062 |  |         nrecdims++; | 
| 1063 |  |     } | 
| 1064 |  | #endif /* USE_NETCDF4 */ | 
| 1065 | 0 |     if(nrecdimsp) *nrecdimsp = nrecdims; | 
| 1066 | 0 |     return status; | 
| 1067 | 0 | } | 
| 1068 |  |  | 
| 1069 |  | /* Ok to use NC pointers because | 
| 1070 |  |    all IOSP's will use that structure, | 
| 1071 |  |    but not ok to use e.g. NC_Var pointers | 
| 1072 |  |    because they may be different structure | 
| 1073 |  |    entirely. | 
| 1074 |  | */ | 
| 1075 |  |  | 
| 1076 |  | /** | 
| 1077 |  |    @internal | 
| 1078 |  |    Find the length of a type. This is how much space is required by | 
| 1079 |  |    the in memory to hold one element of this type. | 
| 1080 |  |  | 
| 1081 |  |    @param type A netCDF atomic type. | 
| 1082 |  |  | 
| 1083 |  |    @return Length of the type in bytes, or -1 if type not found. | 
| 1084 |  |    @author Ed Hartnett | 
| 1085 |  | */ | 
| 1086 |  | int | 
| 1087 |  | nctypelen(nc_type type) | 
| 1088 | 0 | { | 
| 1089 | 0 |     switch(type){ | 
| 1090 | 0 |     case NC_CHAR : | 
| 1091 | 0 |         return ((int)sizeof(char)); | 
| 1092 | 0 |     case NC_BYTE : | 
| 1093 | 0 |         return ((int)sizeof(signed char)); | 
| 1094 | 0 |     case NC_SHORT : | 
| 1095 | 0 |         return ((int)sizeof(short)); | 
| 1096 | 0 |     case NC_INT : | 
| 1097 | 0 |         return ((int)sizeof(int)); | 
| 1098 | 0 |     case NC_FLOAT : | 
| 1099 | 0 |         return ((int)sizeof(float)); | 
| 1100 | 0 |     case NC_DOUBLE : | 
| 1101 | 0 |         return ((int)sizeof(double)); | 
| 1102 |  |  | 
| 1103 |  |         /* These can occur in netcdf-3 code */ | 
| 1104 | 0 |     case NC_UBYTE : | 
| 1105 | 0 |         return ((int)sizeof(unsigned char)); | 
| 1106 | 0 |     case NC_USHORT : | 
| 1107 | 0 |         return ((int)(sizeof(unsigned short))); | 
| 1108 | 0 |     case NC_UINT : | 
| 1109 | 0 |         return ((int)sizeof(unsigned int)); | 
| 1110 | 0 |     case NC_INT64 : | 
| 1111 | 0 |         return ((int)sizeof(signed long long)); | 
| 1112 | 0 |     case NC_UINT64 : | 
| 1113 | 0 |         return ((int)sizeof(unsigned long long)); | 
| 1114 | 0 | #ifdef USE_NETCDF4 | 
| 1115 | 0 |     case NC_STRING : | 
| 1116 | 0 |         return ((int)sizeof(char*)); | 
| 1117 | 0 | #endif /*USE_NETCDF4*/ | 
| 1118 |  |  | 
| 1119 | 0 |     default: | 
| 1120 | 0 |         return -1; | 
| 1121 | 0 |     } | 
| 1122 | 0 | } | 
| 1123 |  |  | 
| 1124 |  | /** | 
| 1125 |  |     @internal | 
| 1126 |  |     Find the length of a type. Redundant over nctypelen() above. | 
| 1127 |  |  | 
| 1128 |  |     @param xtype an nc_type. | 
| 1129 |  |  | 
| 1130 |  |     @author Dennis Heimbigner | 
| 1131 |  | */ | 
| 1132 |  | size_t | 
| 1133 |  | NC_atomictypelen(nc_type xtype) | 
| 1134 | 0 | { | 
| 1135 | 0 |     size_t sz = 0; | 
| 1136 | 0 |     switch(xtype) { | 
| 1137 | 0 |     case NC_NAT: sz = 0; break; | 
| 1138 | 0 |     case NC_BYTE: sz = sizeof(signed char); break; | 
| 1139 | 0 |     case NC_CHAR: sz = sizeof(char); break; | 
| 1140 | 0 |     case NC_SHORT: sz = sizeof(short); break; | 
| 1141 | 0 |     case NC_INT: sz = sizeof(int); break; | 
| 1142 | 0 |     case NC_FLOAT: sz = sizeof(float); break; | 
| 1143 | 0 |     case NC_DOUBLE: sz = sizeof(double); break; | 
| 1144 | 0 |     case NC_INT64: sz = sizeof(signed long long); break; | 
| 1145 | 0 |     case NC_UBYTE: sz = sizeof(unsigned char); break; | 
| 1146 | 0 |     case NC_USHORT: sz = sizeof(unsigned short); break; | 
| 1147 | 0 |     case NC_UINT: sz = sizeof(unsigned int); break; | 
| 1148 | 0 |     case NC_UINT64: sz = sizeof(unsigned long long); break; | 
| 1149 | 0 | #ifdef USE_NETCDF4 | 
| 1150 | 0 |     case NC_STRING: sz = sizeof(char*); break; | 
| 1151 | 0 | #endif | 
| 1152 | 0 |     default: break; | 
| 1153 | 0 |     } | 
| 1154 | 0 |     return sz; | 
| 1155 | 0 | } | 
| 1156 |  |  | 
| 1157 |  | /** | 
| 1158 |  |     @internal | 
| 1159 |  |     Get the type name. | 
| 1160 |  |  | 
| 1161 |  |     @param xtype an nc_type. | 
| 1162 |  |  | 
| 1163 |  |     @author Dennis Heimbigner | 
| 1164 |  | */ | 
| 1165 |  | char * | 
| 1166 |  | NC_atomictypename(nc_type xtype) | 
| 1167 | 0 | { | 
| 1168 | 0 |     char* nm = NULL; | 
| 1169 | 0 |     switch(xtype) { | 
| 1170 | 0 |     case NC_NAT: nm = "undefined"; break; | 
| 1171 | 0 |     case NC_BYTE: nm = "byte"; break; | 
| 1172 | 0 |     case NC_CHAR: nm = "char"; break; | 
| 1173 | 0 |     case NC_SHORT: nm = "short"; break; | 
| 1174 | 0 |     case NC_INT: nm = "int"; break; | 
| 1175 | 0 |     case NC_FLOAT: nm = "float"; break; | 
| 1176 | 0 |     case NC_DOUBLE: nm = "double"; break; | 
| 1177 | 0 |     case NC_INT64: nm = "int64"; break; | 
| 1178 | 0 |     case NC_UBYTE: nm = "ubyte"; break; | 
| 1179 | 0 |     case NC_USHORT: nm = "ushort"; break; | 
| 1180 | 0 |     case NC_UINT: nm = "uint"; break; | 
| 1181 | 0 |     case NC_UINT64: nm = "uint64"; break; | 
| 1182 | 0 | #ifdef USE_NETCDF4 | 
| 1183 | 0 |     case NC_STRING: nm = "string"; break; | 
| 1184 | 0 | #endif | 
| 1185 | 0 |     default: break; | 
| 1186 | 0 |     } | 
| 1187 | 0 |     return nm; | 
| 1188 | 0 | } | 
| 1189 |  |  | 
| 1190 |  | /** | 
| 1191 |  |    @internal | 
| 1192 |  |    Get the shape of a variable. | 
| 1193 |  |  | 
| 1194 |  |    @param ncid NetCDF ID, from a previous call to nc_open() or | 
| 1195 |  |    nc_create(). | 
| 1196 |  |    @param varid Variable ID. | 
| 1197 |  |    @param ndims Number of dimensions for this var. | 
| 1198 |  |    @param shape Pointer to pre-allocated array that gets the size of | 
| 1199 |  |    each dimension. | 
| 1200 |  |  | 
| 1201 |  |    @return ::NC_NOERR No error. | 
| 1202 |  |    @return ::NC_EBADID Bad ncid. | 
| 1203 |  |    @return ::NC_ENOTVAR Bad varid. | 
| 1204 |  |  | 
| 1205 |  |    @author Dennis Heimbigner | 
| 1206 |  | */ | 
| 1207 |  | int | 
| 1208 |  | NC_getshape(int ncid, int varid, int ndims, size_t* shape) | 
| 1209 | 0 | { | 
| 1210 | 0 |     int dimids[NC_MAX_VAR_DIMS]; | 
| 1211 | 0 |     int i; | 
| 1212 | 0 |     int status = NC_NOERR; | 
| 1213 |  | 
 | 
| 1214 | 0 |     if ((status = nc_inq_vardimid(ncid, varid, dimids))) | 
| 1215 | 0 |         return status; | 
| 1216 | 0 |     for(i = 0; i < ndims; i++) | 
| 1217 | 0 |         if ((status = nc_inq_dimlen(ncid, dimids[i], &shape[i]))) | 
| 1218 | 0 |             break; | 
| 1219 |  | 
 | 
| 1220 | 0 |     return status; | 
| 1221 | 0 | } | 
| 1222 |  |  | 
| 1223 |  | /** | 
| 1224 |  |    @internal Check the start, count, and stride parameters for gets | 
| 1225 |  |    and puts, and handle NULLs. | 
| 1226 |  |  | 
| 1227 |  |    @param ncid The file ID. | 
| 1228 |  |    @param varid The variable ID. | 
| 1229 |  |    @param start Pointer to start array. If NULL ::NC_EINVALCOORDS will | 
| 1230 |  |    be returned for non-scalar variable. This array must be same size | 
| 1231 |  |    as variable's number of dimensions. | 
| 1232 |  |    @param count Pointer to pointer to count array. If *count is NULL, | 
| 1233 |  |    an array of the correct size will be allocated, and filled with | 
| 1234 |  |    counts that represent the full extent of the variable. In this | 
| 1235 |  |    case, the memory must be freed by the caller. If provided, this | 
| 1236 |  |    array must be same size as variable's number of dimensions. | 
| 1237 |  |    @param stride Pointer to pointer to stride array. If NULL, stide is | 
| 1238 |  |    ignored. If *stride is NULL an array of the correct size will be | 
| 1239 |  |    allocated, and filled with ones. In this case, the memory must be | 
| 1240 |  |    freed by the caller. If provided, this | 
| 1241 |  |    array must be same size as variable's number of dimensions. | 
| 1242 |  |  | 
| 1243 |  |    @return ::NC_NOERR No error. | 
| 1244 |  |    @return ::NC_EBADID Bad ncid. | 
| 1245 |  |    @return ::NC_ENOTVAR Variable not found. | 
| 1246 |  |    @return ::NC_ENOMEM Out of memory. | 
| 1247 |  |    @return ::NC_EINVALCOORDS Missing start array. | 
| 1248 |  |    @author Ed Hartnett | 
| 1249 |  | */ | 
| 1250 |  | int | 
| 1251 |  | NC_check_nulls(int ncid, int varid, const size_t *start, size_t **count, | 
| 1252 |  |                ptrdiff_t **stride) | 
| 1253 | 0 | { | 
| 1254 | 0 |     int varndims; | 
| 1255 | 0 |     int stat; | 
| 1256 |  | 
 | 
| 1257 | 0 |     if ((stat = nc_inq_varndims(ncid, varid, &varndims))) | 
| 1258 | 0 |         return stat; | 
| 1259 |  |  | 
| 1260 |  |     /* For non-scalar vars, start is required. */ | 
| 1261 | 0 |     if (!start && varndims) | 
| 1262 | 0 |         return NC_EINVALCOORDS; | 
| 1263 |  |  | 
| 1264 |  |     /* If count is NULL, assume full extent of var. */ | 
| 1265 | 0 |     if (!*count) | 
| 1266 | 0 |     { | 
| 1267 | 0 |         if (!(*count = malloc((size_t)varndims * sizeof(size_t)))) | 
| 1268 | 0 |             return NC_ENOMEM; | 
| 1269 | 0 |         if ((stat = NC_getshape(ncid, varid, varndims, *count))) | 
| 1270 | 0 |         { | 
| 1271 | 0 |             free(*count); | 
| 1272 | 0 |             *count = NULL; | 
| 1273 | 0 |             return stat; | 
| 1274 | 0 |         } | 
| 1275 | 0 |     } | 
| 1276 |  |  | 
| 1277 |  |     /* If stride is NULL, do nothing, if *stride is NULL use all | 
| 1278 |  |      * 1s. */ | 
| 1279 | 0 |     if (stride && !*stride) | 
| 1280 | 0 |     { | 
| 1281 | 0 |         int i; | 
| 1282 |  | 
 | 
| 1283 | 0 |         if (!(*stride = malloc((size_t)varndims * sizeof(ptrdiff_t)))) | 
| 1284 | 0 |             return NC_ENOMEM; | 
| 1285 | 0 |         for (i = 0; i < varndims; i++) | 
| 1286 | 0 |             (*stride)[i] = 1; | 
| 1287 | 0 |     } | 
| 1288 |  |  | 
| 1289 | 0 |     return NC_NOERR; | 
| 1290 | 0 | } | 
| 1291 |  |  | 
| 1292 |  | /** | 
| 1293 |  |    @name Free String Resources | 
| 1294 |  |  | 
| 1295 |  |    Use these functions to free resources associated with ::NC_STRING data. | 
| 1296 |  | */ | 
| 1297 |  | /*! @{ */ | 
| 1298 |  | /** | 
| 1299 |  |    Free string space allocated by the library. | 
| 1300 |  |  | 
| 1301 |  |    When you read an array string typed data the library will allocate the storage | 
| 1302 |  |    space for the data. The allocated strings must be freed, so pass the | 
| 1303 |  |    pointer to the array plus a count of the number of elements in the array to this function, | 
| 1304 |  |    when you're done with the data, and it will free the allocated string memory. | 
| 1305 |  |  | 
| 1306 |  |    WARNING: This does not free the top-level array itself, only | 
| 1307 |  |    the strings to which it points. | 
| 1308 |  |  | 
| 1309 |  |    @param len The number of character arrays in the array. | 
| 1310 |  |    @param data The pointer to the data array. | 
| 1311 |  |  | 
| 1312 |  |    @return ::NC_NOERR No error. | 
| 1313 |  |    @author Ed Hartnett | 
| 1314 |  | */ | 
| 1315 |  | int | 
| 1316 |  | nc_free_string(size_t len, char **data) | 
| 1317 | 0 | { | 
| 1318 | 0 |     size_t i; | 
| 1319 | 0 |     for (i = 0; i < len; i++) | 
| 1320 | 0 |         free(data[i]); | 
| 1321 | 0 |     return NC_NOERR; | 
| 1322 | 0 | } | 
| 1323 |  | /** @} */ | 
| 1324 |  |  | 
| 1325 |  | /** | 
| 1326 |  |    @name Variables Chunk Caches | 
| 1327 |  |  | 
| 1328 |  |    Use these functions to change the variable chunk cache settings. | 
| 1329 |  | */ | 
| 1330 |  | /*! @{ */ | 
| 1331 |  | /** | 
| 1332 |  |    Change the cache settings for a chunked variable. This function allows | 
| 1333 |  |    users to control the amount of memory used in the per-variable chunk | 
| 1334 |  |    cache at the HDF5 level. Changing the chunk cache only has effect | 
| 1335 |  |    until the file is closed. Once re-opened, the variable chunk cache | 
| 1336 |  |    returns to its default value. | 
| 1337 |  |  | 
| 1338 |  |    Current cache settings for each var may be obtained with | 
| 1339 |  |    nc_get_var_chunk_cache(). | 
| 1340 |  |  | 
| 1341 |  |    Default values for these settings may be changed for the whole file | 
| 1342 |  |    with nc_set_chunk_cache(). | 
| 1343 |  |  | 
| 1344 |  |    @param ncid NetCDF or group ID, from a previous call to nc_open(), | 
| 1345 |  |    nc_create(), nc_def_grp(), or associated inquiry functions such as | 
| 1346 |  |    nc_inq_ncid(). | 
| 1347 |  |    @param varid Variable ID | 
| 1348 |  |    @param size The total size of the raw data chunk cache, in bytes. | 
| 1349 |  |    @param nelems The number of chunk slots in the raw data chunk cache. | 
| 1350 |  |    @param preemption The preemption, a value between 0 and 1 inclusive | 
| 1351 |  |    that indicates how much chunks that have been fully read are favored | 
| 1352 |  |    for preemption. A value of zero means fully read chunks are treated no | 
| 1353 |  |    differently than other chunks (the preemption is strictly LRU) while a | 
| 1354 |  |    value of one means fully read chunks are always preempted before other | 
| 1355 |  |    chunks. | 
| 1356 |  |  | 
| 1357 |  |    @return ::NC_NOERR No error. | 
| 1358 |  |    @return ::NC_EBADID Bad ncid. | 
| 1359 |  |    @return ::NC_ENOTVAR Invalid variable ID. | 
| 1360 |  |    @return ::NC_ESTRICTNC3 Attempting netcdf-4 operation on strict nc3 | 
| 1361 |  |    netcdf-4 file. | 
| 1362 |  |    @return ::NC_EINVAL Invalid input | 
| 1363 |  |  | 
| 1364 |  |    @section nc_def_var_chunk_cache_example Example | 
| 1365 |  |  | 
| 1366 |  |    In this example from nc_test4/tst_coords.c, a variable is defined, and | 
| 1367 |  |    the chunk cache settings are changed for that variable. | 
| 1368 |  |  | 
| 1369 |  |    @code | 
| 1370 |  |    printf("**** testing setting cache values for coordinate variables..."); | 
| 1371 |  |    { | 
| 1372 |  |    #define RANK_1 1 | 
| 1373 |  |    #define DIM0_NAME "d0" | 
| 1374 |  |    #define CACHE_SIZE 1000000 | 
| 1375 |  |    #define CACHE_NELEMS 1009 | 
| 1376 |  |    #define CACHE_PREEMPTION .90 | 
| 1377 |  |  | 
| 1378 |  |    int ncid, dimid, varid; | 
| 1379 |  |    char name_in[NC_MAX_NAME + 1]; | 
| 1380 |  |  | 
| 1381 |  |    if (nc_create(FILE_NAME, NC_CLASSIC_MODEL|NC_NETCDF4, &ncid)) ERR; | 
| 1382 |  |    if (nc_def_dim(ncid, DIM0_NAME, NC_UNLIMITED, &dimid)) ERR; | 
| 1383 |  |    if (nc_def_var(ncid, DIM0_NAME, NC_DOUBLE, 1, &dimid, &varid)) ERR; | 
| 1384 |  |    if (nc_set_var_chunk_cache(ncid, varid, CACHE_SIZE, CACHE_NELEMS, CACHE_PREEMPTION)) ERR; | 
| 1385 |  |    if (nc_close(ncid)) ERR; | 
| 1386 |  |  | 
| 1387 |  |    ... | 
| 1388 |  |    } | 
| 1389 |  |    SUMMARIZE_ERR; | 
| 1390 |  |    @endcode | 
| 1391 |  |    @author Ed Hartnett | 
| 1392 |  | */ | 
| 1393 |  | int | 
| 1394 |  | nc_set_var_chunk_cache(int ncid, int varid, size_t size, size_t nelems, | 
| 1395 |  |                        float preemption) | 
| 1396 | 0 | { | 
| 1397 | 0 |     NC* ncp; | 
| 1398 | 0 |     int stat = NC_check_id(ncid, &ncp); | 
| 1399 | 0 |     if(stat != NC_NOERR) return stat; | 
| 1400 | 0 |     return ncp->dispatch->set_var_chunk_cache(ncid, varid, size, | 
| 1401 | 0 |                                               nelems, preemption); | 
| 1402 | 0 | } | 
| 1403 |  |  | 
| 1404 |  | /** | 
| 1405 |  |    Get the per-variable chunk cache settings from the HDF5 | 
| 1406 |  |    layer. These settings may be changed with nc_set_var_chunk_cache(). | 
| 1407 |  |  | 
| 1408 |  |    See nc_set_chunk_cache() for a full discussion of these settings. | 
| 1409 |  |  | 
| 1410 |  |    @param ncid NetCDF or group ID, from a previous call to nc_open(), | 
| 1411 |  |    nc_create(), nc_def_grp(), or associated inquiry functions such as | 
| 1412 |  |    nc_inq_ncid(). | 
| 1413 |  |    @param varid Variable ID | 
| 1414 |  |    @param sizep The total size of the raw data chunk cache, in bytes, | 
| 1415 |  |    will be put here. @ref ignored_if_null. | 
| 1416 |  |    @param nelemsp The number of chunk slots in the raw data chunk | 
| 1417 |  |    cache hash table will be put here. @ref ignored_if_null. | 
| 1418 |  |    @param preemptionp The preemption will be put here. The preemtion | 
| 1419 |  |    value is between 0 and 1 inclusive and indicates how much chunks | 
| 1420 |  |    that have been fully read are favored for preemption. A value of | 
| 1421 |  |    zero means fully read chunks are treated no differently than other | 
| 1422 |  |    chunks (the preemption is strictly LRU) while a value of one means | 
| 1423 |  |    fully read chunks are always preempted before other chunks. @ref | 
| 1424 |  |    ignored_if_null. | 
| 1425 |  |  | 
| 1426 |  |    @return ::NC_NOERR No error. | 
| 1427 |  |    @return ::NC_EBADID Bad ncid. | 
| 1428 |  |    @return ::NC_ENOTVAR Invalid variable ID. | 
| 1429 |  |    @return ::NC_ESTRICTNC3 Attempting netcdf-4 operation on strict nc3 | 
| 1430 |  |    netcdf-4 file. | 
| 1431 |  |    @return ::NC_EINVAL Invalid input | 
| 1432 |  |    @author Ed Hartnett | 
| 1433 |  | */ | 
| 1434 |  | int | 
| 1435 |  | nc_get_var_chunk_cache(int ncid, int varid, size_t *sizep, size_t *nelemsp, | 
| 1436 |  |                        float *preemptionp) | 
| 1437 | 0 | { | 
| 1438 | 0 |     NC* ncp; | 
| 1439 | 0 |     int stat = NC_check_id(ncid, &ncp); | 
| 1440 | 0 |     if(stat != NC_NOERR) return stat; | 
| 1441 | 0 |     return ncp->dispatch->get_var_chunk_cache(ncid, varid, sizep, | 
| 1442 | 0 |                                               nelemsp, preemptionp); | 
| 1443 | 0 | } | 
| 1444 |  |  | 
| 1445 |  | #ifndef USE_NETCDF4 | 
| 1446 |  | /* Make sure the fortran API is defined, even if it only returns errors */ | 
| 1447 |  |  | 
| 1448 |  | int | 
| 1449 |  | nc_set_chunk_cache_ints(int size, int nelems, int preemption) | 
| 1450 |  | { | 
| 1451 |  |     return NC_ENOTBUILT; | 
| 1452 |  | } | 
| 1453 |  |  | 
| 1454 |  | int | 
| 1455 |  | nc_get_chunk_cache_ints(int *sizep, int *nelemsp, int *preemptionp) | 
| 1456 |  | { | 
| 1457 |  |     return NC_ENOTBUILT; | 
| 1458 |  | } | 
| 1459 |  |  | 
| 1460 |  | int | 
| 1461 |  | nc_set_var_chunk_cache_ints(int ncid, int varid, int size, int nelems, | 
| 1462 |  |           int preemption) | 
| 1463 |  | { | 
| 1464 |  |     return NC_ENOTBUILT; | 
| 1465 |  | } | 
| 1466 |  |  | 
| 1467 |  | int | 
| 1468 |  | nc_get_var_chunk_cache_ints(int ncid, int varid, int *sizep, | 
| 1469 |  |           int *nelemsp, int *preemptionp) | 
| 1470 |  | { | 
| 1471 |  |     return NC_ENOTBUILT; | 
| 1472 |  | } | 
| 1473 |  |  | 
| 1474 |  | #endif /*USE_NETCDF4*/ | 
| 1475 |  |  | 
| 1476 |  | /** @} */ | 
| 1477 |  | /** @} */ |