Coverage for /pythoncovmergedfiles/medio/medio/usr/local/lib/python3.9/dist-packages/networkx/algorithms/bipartite/__init__.py: 100%
12 statements
« prev ^ index » next coverage.py v7.3.2, created at 2023-10-20 07:00 +0000
« prev ^ index » next coverage.py v7.3.2, created at 2023-10-20 07:00 +0000
1r""" This module provides functions and operations for bipartite
2graphs. Bipartite graphs `B = (U, V, E)` have two node sets `U,V` and edges in
3`E` that only connect nodes from opposite sets. It is common in the literature
4to use an spatial analogy referring to the two node sets as top and bottom nodes.
6The bipartite algorithms are not imported into the networkx namespace
7at the top level so the easiest way to use them is with:
9>>> from networkx.algorithms import bipartite
11NetworkX does not have a custom bipartite graph class but the Graph()
12or DiGraph() classes can be used to represent bipartite graphs. However,
13you have to keep track of which set each node belongs to, and make
14sure that there is no edge between nodes of the same set. The convention used
15in NetworkX is to use a node attribute named `bipartite` with values 0 or 1 to
16identify the sets each node belongs to. This convention is not enforced in
17the source code of bipartite functions, it's only a recommendation.
19For example:
21>>> B = nx.Graph()
22>>> # Add nodes with the node attribute "bipartite"
23>>> B.add_nodes_from([1, 2, 3, 4], bipartite=0)
24>>> B.add_nodes_from(["a", "b", "c"], bipartite=1)
25>>> # Add edges only between nodes of opposite node sets
26>>> B.add_edges_from([(1, "a"), (1, "b"), (2, "b"), (2, "c"), (3, "c"), (4, "a")])
28Many algorithms of the bipartite module of NetworkX require, as an argument, a
29container with all the nodes that belong to one set, in addition to the bipartite
30graph `B`. The functions in the bipartite package do not check that the node set
31is actually correct nor that the input graph is actually bipartite.
32If `B` is connected, you can find the two node sets using a two-coloring
33algorithm:
35>>> nx.is_connected(B)
36True
37>>> bottom_nodes, top_nodes = bipartite.sets(B)
39However, if the input graph is not connected, there are more than one possible
40colorations. This is the reason why we require the user to pass a container
41with all nodes of one bipartite node set as an argument to most bipartite
42functions. In the face of ambiguity, we refuse the temptation to guess and
43raise an :exc:`AmbiguousSolution <networkx.AmbiguousSolution>`
44Exception if the input graph for
45:func:`bipartite.sets <networkx.algorithms.bipartite.basic.sets>`
46is disconnected.
48Using the `bipartite` node attribute, you can easily get the two node sets:
50>>> top_nodes = {n for n, d in B.nodes(data=True) if d["bipartite"] == 0}
51>>> bottom_nodes = set(B) - top_nodes
53So you can easily use the bipartite algorithms that require, as an argument, a
54container with all nodes that belong to one node set:
56>>> print(round(bipartite.density(B, bottom_nodes), 2))
570.5
58>>> G = bipartite.projected_graph(B, top_nodes)
60All bipartite graph generators in NetworkX build bipartite graphs with the
61`bipartite` node attribute. Thus, you can use the same approach:
63>>> RB = bipartite.random_graph(5, 7, 0.2)
64>>> RB_top = {n for n, d in RB.nodes(data=True) if d["bipartite"] == 0}
65>>> RB_bottom = set(RB) - RB_top
66>>> list(RB_top)
67[0, 1, 2, 3, 4]
68>>> list(RB_bottom)
69[5, 6, 7, 8, 9, 10, 11]
71For other bipartite graph generators see
72:mod:`Generators <networkx.algorithms.bipartite.generators>`.
74"""
76from networkx.algorithms.bipartite.basic import *
77from networkx.algorithms.bipartite.centrality import *
78from networkx.algorithms.bipartite.cluster import *
79from networkx.algorithms.bipartite.covering import *
80from networkx.algorithms.bipartite.edgelist import *
81from networkx.algorithms.bipartite.matching import *
82from networkx.algorithms.bipartite.matrix import *
83from networkx.algorithms.bipartite.projection import *
84from networkx.algorithms.bipartite.redundancy import *
85from networkx.algorithms.bipartite.spectral import *
86from networkx.algorithms.bipartite.generators import *
87from networkx.algorithms.bipartite.extendability import *