/src/openbabel/include/openbabel/molchrg.h
Line | Count | Source |
1 | | /********************************************************************** |
2 | | molchrg.h - Assign Gasteiger partial charges. |
3 | | |
4 | | Copyright (C) 1998-2001 by OpenEye Scientific Software, Inc. |
5 | | Some portions Copyright (C) 2001-2005 by Geoffrey R. Hutchison |
6 | | |
7 | | This file is part of the Open Babel project. |
8 | | For more information, see <http://openbabel.org/> |
9 | | |
10 | | This program is free software; you can redistribute it and/or modify |
11 | | it under the terms of the GNU General Public License as published by |
12 | | the Free Software Foundation version 2 of the License. |
13 | | |
14 | | This program is distributed in the hope that it will be useful, |
15 | | but WITHOUT ANY WARRANTY; without even the implied warranty of |
16 | | MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
17 | | GNU General Public License for more details. |
18 | | ***********************************************************************/ |
19 | | |
20 | | #ifndef OB_MOLCHRG_H |
21 | | #define OB_MOLCHRG_H |
22 | | |
23 | | #include <openbabel/babelconfig.h> |
24 | | #include <vector> |
25 | | |
26 | | namespace OpenBabel |
27 | | { |
28 | | |
29 | | // Foward declarations |
30 | | class OBMol; |
31 | | class OBAtom; |
32 | | |
33 | | //! \class GasteigerState molchrg.h <openbabel/molchrg.h> |
34 | | //! \brief Helper class for OBGastChrg which stores the Gasteiger states of a given atom |
35 | | class OBAPI GasteigerState |
36 | | { |
37 | | public: |
38 | | GasteigerState(); |
39 | 105k | ~GasteigerState() {} |
40 | | |
41 | | void SetValues(double _a,double _b,double _c,double _q) |
42 | 23.9k | { |
43 | 23.9k | a = _a; |
44 | 23.9k | b = _b; |
45 | 23.9k | c = _c; |
46 | 23.9k | denom=a+b+c; |
47 | 23.9k | q = _q; |
48 | 23.9k | } |
49 | | |
50 | | double a, b, c; |
51 | | double denom; |
52 | | double chi; |
53 | | double q; |
54 | | }; |
55 | | |
56 | | // class introduction in molchrg.cpp |
57 | | class OBAPI OBGastChrg |
58 | | { |
59 | | std::vector <GasteigerState*> _gsv; //!< vector of internal GasteigerState (for each atom) |
60 | | |
61 | | void InitialPartialCharges(OBMol &); |
62 | | bool GasteigerSigmaChi(OBAtom *,double &,double &,double &); |
63 | | |
64 | | public: |
65 | 926 | OBGastChrg() {} |
66 | | ~OBGastChrg(); |
67 | | |
68 | | //! Assign partial charges to this OBMol, setting each OBAtom partial charge |
69 | | bool AssignPartialCharges(OBMol &); |
70 | | //! Resize the internal GasteigerState vector to match the size of the molecule |
71 | | void GSVResize(int); |
72 | | }; |
73 | | |
74 | | } |
75 | | |
76 | 9.90k | #define OB_GASTEIGER_DENOM 20.02 |
77 | 1.56k | #define OB_GASTEIGER_DAMP 0.5 |
78 | 1.82k | #define OB_GASTEIGER_ITERS 6 |
79 | | |
80 | | #endif // OB_MOLCHRG_H |
81 | | |
82 | | //! \file molchrg.h |
83 | | //! \brief Assign Gasteiger partial charges. |