Coverage Report

Created: 2025-08-26 07:05

/src/bag/api/bag_metadata.cpp
Line
Count
Source (jump to first uncovered line)
1
2
#include "bag_dataset.h"
3
#include "bag_errors.h"
4
#include "bag_exceptions.h"
5
#include "bag_layer.h"
6
#include "bag_metadata.h"
7
#include "bag_metadata_export.h"
8
#include "bag_metadata_import.h"
9
#include "bag_private.h"
10
11
#include <fstream>
12
#include <H5Cpp.h>
13
#include <iostream>
14
15
16
namespace BAG
17
{
18
19
//! The HDF5 chunk size of the metadata.
20
constexpr hsize_t kMetadataChunkSize = 1024;
21
22
//! The default constructor.
23
Metadata::Metadata() noexcept
24
0
    : m_pMetaStruct(std::make_unique<BagMetadata>())
25
0
{
26
    // Can throw, but only if a new fails.  std::terminate() is fine then.
27
0
    bagInitMetadata(*m_pMetaStruct);
28
0
}
29
30
//! Constructor
31
/*!
32
\param pDataset
33
    A shared pointer to the BAG Dataset the metadata belongs to.
34
*/
35
Metadata::Metadata(std::shared_ptr<Dataset> pDataset)
36
0
    : Metadata(*pDataset)
37
0
{    
38
0
}
39
40
//! Constructor.
41
/*!
42
\param dataset
43
    The BAG Dataset the metadata belongs to.
44
*/
45
Metadata::Metadata(Dataset& dataset)
46
248
    : m_pBagDataset(dataset.shared_from_this())
47
248
    , m_pMetaStruct(std::make_unique<BagMetadata>())
48
248
{
49
248
    bagInitMetadata(*m_pMetaStruct);
50
51
248
    const auto& h5file = dataset.getH5file();
52
53
248
    try
54
248
    {
55
248
        m_pH5dataSet = std::unique_ptr<::H5::DataSet, DeleteH5dataSet>(
56
248
            new ::H5::DataSet{h5file.openDataSet(METADATA_PATH)}, DeleteH5dataSet{});
57
248
    }
58
248
    catch(...)
59
248
    {
60
0
        throw MetadataNotFound{};
61
0
    }
62
63
248
    H5std_string buffer;
64
248
    const ::H5::StrType stringType{*m_pH5dataSet};
65
248
    m_pH5dataSet->read(buffer, stringType);
66
67
248
    this->loadFromBuffer(buffer);
68
248
}
69
70
//! Destructor.
71
Metadata::~Metadata() noexcept
72
248
{
73
248
    if (m_pMetaStruct)
74
248
    {
75
248
        try
76
248
        {
77
248
            bagFreeMetadata(*m_pMetaStruct);
78
248
        }
79
248
        catch(...)  // Prevent any exceptions from escaping.
80
248
        {}
81
248
    }
82
248
}
83
84
85
//! Retrieve the column resolution.
86
/*!
87
\return
88
    The column resolution.
89
*/
90
double Metadata::columnResolution() const noexcept
91
290
{
92
290
    return m_pMetaStruct->spatialRepresentationInfo->columnResolution;
93
290
}
94
95
//! Retrieve the number of columns.
96
/*!
97
\return
98
    The number of columns.
99
*/
100
uint32_t Metadata::columns() const noexcept
101
248
{
102
248
    return m_pMetaStruct->spatialRepresentationInfo->numberOfColumns;
103
248
}
104
105
//! Create an HDF5 DataSet to store the metadata.
106
/*!
107
\param dataset
108
    The BAG Dataset this layer belongs to.
109
*/
110
void Metadata::createH5dataSet(
111
    const Dataset& dataset)
112
0
{
113
0
    m_pBagDataset = dataset.shared_from_this();
114
115
0
    const auto& h5file = dataset.getH5file();
116
117
0
    const auto buffer = exportMetadataToXML(this->getStruct());
118
0
    const hsize_t xmlLength{buffer.size()};
119
0
    const hsize_t kUnlimitedSize = H5F_UNLIMITED;
120
0
    const ::H5::DataSpace h5dataSpace{1, &xmlLength, &kUnlimitedSize};
121
122
0
    const ::H5::DSetCreatPropList h5createPropList{};
123
0
    h5createPropList.setChunk(1, &kMetadataChunkSize);
124
125
0
    m_pH5dataSet = std::unique_ptr<::H5::DataSet, DeleteH5dataSet>(
126
0
        new ::H5::DataSet{h5file.createDataSet(METADATA_PATH,
127
0
            ::H5::PredType::C_S1, h5dataSpace, h5createPropList)},
128
0
            DeleteH5dataSet{});
129
130
0
    m_pH5dataSet->extend(&xmlLength);
131
0
}
132
133
//! Retrieve the C structure this class wraps.
134
/*!
135
\return
136
    The C structure this class wraps.
137
*/
138
const BagMetadata& Metadata::getStruct() const & noexcept
139
0
{
140
0
    return *m_pMetaStruct;
141
0
}
142
143
//! Retrieve the length of the XML in this metadata.
144
/*!
145
\return
146
    The length of the XML in this metadata.
147
*/
148
size_t Metadata::getXMLlength() const noexcept
149
0
{
150
0
    return m_xmlLength;
151
0
}
152
153
//! Retrieve a copy of the horizontal reference system as WKT.
154
/*!
155
\return
156
    A copy of the horizontal reference system as WKT.
157
    The string is empty if it is not WKT.
158
*/
159
std::string Metadata::horizontalReferenceSystemAsWKT() const
160
248
{
161
248
    const auto* type = m_pMetaStruct->horizontalReferenceSystem->type;
162
248
    if (!type || type != std::string{"WKT"})
163
16
        return {};
164
165
232
    return m_pMetaStruct->horizontalReferenceSystem->definition;
166
248
}
167
168
//! Retrieve the lower left corner's X value.
169
/*!
170
\return
171
    The lower left corner's X value.
172
*/
173
double Metadata::llCornerX() const noexcept
174
538
{
175
538
    return m_pMetaStruct->spatialRepresentationInfo->llCornerX;
176
538
}
177
178
//! Retrieve the lower left corner's Y value.
179
/*!
180
\return
181
    The lower left corner's Y value.
182
*/
183
double Metadata::llCornerY() const noexcept
184
538
{
185
538
    return m_pMetaStruct->spatialRepresentationInfo->llCornerY;
186
538
}
187
188
//! Populate the metadata from the XML in the specified file.
189
/*!
190
    Read the XML from the specified file.  An ErrorLoadingMetadata exception is
191
    thrown if an error occurs.
192
193
\param fileName
194
    The XML file to read into this class.
195
*/
196
void Metadata::loadFromFile(const std::string& fileName)
197
0
{
198
0
    const BagError err = bagImportMetadataFromXmlFile(fileName.c_str(),
199
0
        *m_pMetaStruct, false);
200
0
    if (err != BAG_SUCCESS)
201
0
        throw ErrorLoadingMetadata{err};
202
203
0
    std::ifstream ifs{fileName, std::ios_base::in|std::ios_base::binary};
204
0
    ifs.seekg(0, std::ios_base::end);
205
0
    m_xmlLength = ifs.tellg();
206
0
}
207
208
//! Populate the metadata from the XML in the specified buffer.
209
/*!
210
    Read the XML from the specified buffer.  An ErrorLoadingMetadata exception
211
    is thrown if an error occurs.
212
213
\param xmlBuffer
214
    The XML buffer.
215
*/
216
void Metadata::loadFromBuffer(const std::string& xmlBuffer)
217
248
{
218
248
    BagError err;
219
    // BAG stores its metadata XML document in HDF5 as a null-terminated C-style string. In recent
220
    // versions of libxml2 (ca. 1.12+), the xmlParseMemory() function blows up if there are any
221
    // characters (including whitespace) between the closing '>' of the closing XML element of the
222
    // metadata document and the null termination character. Since we don't know what version of
223
    // libxml2 people are linking against, let's strip all trailing characters, which have no semantic
224
    // meaning as far as the XML parser is concerned, before trying to load the metadata XML document.
225
248
    auto pos = xmlBuffer.rfind('>');
226
248
    if (pos != std::string::npos) {
227
248
        auto xmlBuffer_stripped = xmlBuffer.substr(0, pos+1);
228
248
        err = bagImportMetadataFromXmlBuffer(xmlBuffer_stripped.c_str(),
229
248
        static_cast<int>(xmlBuffer_stripped.size()), *m_pMetaStruct, false);
230
248
    } else {
231
        // This branch is only needed if the metadata XML doesn't contain an XML element, i.e.
232
        // if it isn't a well-formed XML document.
233
0
        err = bagImportMetadataFromXmlBuffer(xmlBuffer.c_str(),
234
0
        static_cast<int>(xmlBuffer.size()), *m_pMetaStruct, false);
235
0
    }
236
237
248
    if (err != BAG_SUCCESS)
238
0
        throw ErrorLoadingMetadata{err};
239
240
248
    m_xmlLength = xmlBuffer.size();
241
248
}
242
243
//! Retrieve the row resolution.
244
/*!
245
\return
246
    The row resolution.
247
*/
248
double Metadata::rowResolution() const noexcept
249
290
{
250
290
    return m_pMetaStruct->spatialRepresentationInfo->rowResolution;
251
290
}
252
253
//! Retrieve the number of rows.
254
/*!
255
\return
256
    The number of rows.
257
*/
258
uint32_t Metadata::rows() const noexcept
259
248
{
260
248
    return m_pMetaStruct->spatialRepresentationInfo->numberOfRows;
261
248
}
262
263
//! Retrieve the upper right corner's X value.
264
/*!
265
\return
266
    The upper right corner's X value.
267
*/
268
double Metadata::urCornerX() const noexcept
269
248
{
270
248
    return m_pMetaStruct->spatialRepresentationInfo->urCornerX;
271
248
}
272
273
//! Retrieve the upper right corner's Y value.
274
/*!
275
\return
276
    The upper right corner's Y value.
277
*/
278
double Metadata::urCornerY() const noexcept
279
248
{
280
248
    return m_pMetaStruct->spatialRepresentationInfo->urCornerY;
281
248
}
282
283
//! Retrieve a copy of the vertical reference system as WKT.
284
/*!
285
\return
286
    A copy of the vertical reference system as WKT.
287
    The string is empty if it is not WKT.
288
*/
289
std::string Metadata::verticalReferenceSystemAsWKT() const
290
248
{
291
248
    const auto* type = m_pMetaStruct->verticalReferenceSystem->type;
292
248
    if (!type || type != std::string{"WKT"})
293
50
        return {};
294
295
198
    return m_pMetaStruct->verticalReferenceSystem->definition;
296
248
}
297
298
//! Write the metadata to the HDF5 file.
299
void Metadata::write() const
300
0
{
301
0
    const auto buffer = exportMetadataToXML(this->getStruct());
302
303
0
    const hsize_t bufferLen = buffer.size();
304
0
    const hsize_t kMaxSize = H5F_UNLIMITED;
305
0
    const ::H5::DataSpace h5dataSpace{1, &bufferLen, &kMaxSize};
306
307
0
    m_pH5dataSet->write(buffer, ::H5::PredType::C_S1, h5dataSpace);
308
0
}
309
310
}   //namespace BAG
311
312