The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 5490 | 0 | EP | call site: 00000 | view_sam |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
realloc
[call site]
00024
__ac_FNV1a_hash_string
[function]
[call site]
00025
strcmp
[call site]
00026
__errno_location
[call site]
00027
strerror
[call site]
00028
hts_log
[function]
[call site]
00029
priority
[function]
[call site]
00030
hfile_add_scheme_handler
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
init_add_plugin
[function]
[call site]
00033
hts_log
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hfile_plugin_init_mem
[function]
[call site]
00037
hfile_add_scheme_handler
[function]
[call site]
00038
init_add_plugin
[function]
[call site]
00039
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00040
hfile_add_scheme_handler
[function]
[call site]
00041
init_add_plugin
[function]
[call site]
00042
hfile_plugin_init_libcurl
[function]
[call site]
00043
hts_version
[function]
[call site]
00044
curl_global_init
[call site]
00045
easy_errno
[function]
[call site]
00046
curl_easy_getinfo
[call site]
00047
curl_easy_getinfo
[call site]
00048
http_status_errno
[function]
[call site]
00049
curl_easy_strerror
[call site]
00050
hts_log
[function]
[call site]
00051
__errno_location
[call site]
00052
curl_share_init
[call site]
00053
curl_global_cleanup
[call site]
00054
__errno_location
[call site]
00055
curl_share_setopt
[call site]
00056
share_lock
[function]
[call site]
00057
pthread_mutex_lock
[call site]
00058
curl_share_setopt
[call site]
00059
share_unlock
[function]
[call site]
00060
pthread_mutex_unlock
[call site]
00061
curl_share_setopt
[call site]
00062
curl_share_cleanup
[call site]
00063
curl_global_cleanup
[call site]
00064
__errno_location
[call site]
00065
getenv
[call site]
00066
strdup
[call site]
00067
kh_init_auth_map
[function]
[call site]
00068
calloc
[call site]
00069
__errno_location
[call site]
00070
kh_destroy_auth_map
[function]
[call site]
00071
curl_share_cleanup
[call site]
00072
curl_global_cleanup
[call site]
00073
__errno_location
[call site]
00074
getenv
[call site]
00075
strcmp
[call site]
00076
curl_version_info
[call site]
00077
ksprintf
[function]
[call site]
00078
kvsprintf
[function]
[call site]
00079
kputd
[function]
[call site]
00080
kputsn
[function]
[call site]
00081
__errno_location
[call site]
00082
ks_resize
[function]
[call site]
00083
realloc
[call site]
00084
kputsn
[function]
[call site]
00085
kputc
[function]
[call site]
00086
ks_resize
[function]
[call site]
00087
ks_resize
[function]
[call site]
00088
snprintf
[call site]
00089
kputsn
[function]
[call site]
00090
vsnprintf
[call site]
00091
ks_resize
[function]
[call site]
00092
vsnprintf
[call site]
00093
hfile_add_scheme_handler
[function]
[call site]
00094
init_add_plugin
[function]
[call site]
00095
hfile_plugin_init_gcs
[function]
[call site]
00096
hfile_add_scheme_handler
[function]
[call site]
00097
hfile_add_scheme_handler
[function]
[call site]
00098
hfile_add_scheme_handler
[function]
[call site]
00099
init_add_plugin
[function]
[call site]
00100
hfile_plugin_init_s3
[function]
[call site]
00101
hfile_add_scheme_handler
[function]
[call site]
00102
hfile_add_scheme_handler
[function]
[call site]
00103
hfile_add_scheme_handler
[function]
[call site]
00104
init_add_plugin
[function]
[call site]
00105
hfile_plugin_init_s3_write
[function]
[call site]
00106
hts_version
[function]
[call site]
00107
curl_global_init
[call site]
00108
curl_share_init
[call site]
00109
curl_global_cleanup
[call site]
00110
__errno_location
[call site]
00111
curl_share_setopt
[call site]
00112
share_lock
[function]
[call site]
00113
pthread_mutex_lock
[call site]
00114
curl_share_setopt
[call site]
00115
share_unlock
[function]
[call site]
00116
pthread_mutex_unlock
[call site]
00117
curl_share_setopt
[call site]
00118
curl_share_cleanup
[call site]
00119
curl_global_cleanup
[call site]
00120
__errno_location
[call site]
00121
curl_version_info
[call site]
00122
ksprintf
[function]
[call site]
00123
hfile_add_scheme_handler
[function]
[call site]
00124
hfile_add_scheme_handler
[function]
[call site]
00125
hfile_add_scheme_handler
[function]
[call site]
00126
atexit
[call site]
00127
hfile_exit
[function]
[call site]
00128
hfile_shutdown
[function]
[call site]
00129
pthread_mutex_lock
[call site]
00130
kh_destroy_scheme_string
[function]
[call site]
00131
pthread_mutex_unlock
[call site]
00132
pthread_mutex_destroy
[call site]
00133
pthread_mutex_unlock
[call site]
00134
pthread_mutex_unlock
[call site]
00135
kh_get_scheme_string
[function]
[call site]
00136
strchr
[call site]
00137
strcmp
[call site]
00138
hopen_fd_stdinout
[function]
[call site]
00139
strchr
[call site]
00140
snprintf
[call site]
00141
hdopen
[function]
[call site]
00142
blksize
[function]
[call site]
00143
fstat
[call site]
00144
hfile_init
[function]
[call site]
00145
strchr
[call site]
00146
posix_memalign
[call site]
00147
strchr
[call site]
00148
hfile_destroy
[function]
[call site]
00149
__errno_location
[call site]
00150
__errno_location
[call site]
00151
strchr
[call site]
00152
strchr
[call site]
00153
hopen_fd
[function]
[call site]
00154
hfile_oflags
[function]
[call site]
00155
open
[call site]
00156
blksize
[function]
[call site]
00157
hfile_init
[function]
[call site]
00158
__errno_location
[call site]
00159
close
[call site]
00160
hfile_destroy
[function]
[call site]
00161
hts_hopen
[function]
[call site]
00162
calloc
[call site]
00163
strdup
[call site]
00164
ed_is_big
[function]
[call site]
00165
strchr
[call site]
00166
strncpy
[call site]
00167
strncpy
[call site]
00168
strchr
[call site]
00169
hts_detect_format2
[function]
[call site]
00170
hpeek
[function]
[call site]
00171
refill_buffer
[function]
[call site]
00172
__errno_location
[call site]
00173
memcmp
[call site]
00174
memcmp
[call site]
00175
decompress_peek_gz
[function]
[call site]
00176
hpeek
[function]
[call site]
00177
inflateInit2_
[call site]
00178
inflate
[call site]
00179
inflateReset
[call site]
00180
inflateEnd
[call site]
00181
memcmp
[call site]
00182
memcmp
[call site]
00183
memcmp
[call site]
00184
memcmp
[call site]
00185
decompress_peek_xz
[function]
[call site]
00186
hpeek
[function]
[call site]
00187
lzma_easy_decoder_memusage
[call site]
00188
lzma_stream_decoder
[call site]
00189
lzma_code
[call site]
00190
lzma_end
[call site]
00191
lzma_end
[call site]
00192
memcmp
[call site]
00193
hpeek
[function]
[call site]
00194
strcmp
[call site]
00195
find_file_extension
[function]
[call site]
00196
strstr
[call site]
00197
strlen
[call site]
00198
tolower_c
[function]
[call site]
00199
memcmp
[call site]
00200
memcmp
[call site]
00201
memcmp
[call site]
00202
memcmp
[call site]
00203
memcmp
[call site]
00204
memcmp
[call site]
00205
memcmp
[call site]
00206
strcmp
[call site]
00207
memcmp
[call site]
00208
parse_version
[function]
[call site]
00209
isdigit_c
[function]
[call site]
00210
__ctype_b_loc
[call site]
00211
isdigit_c
[function]
[call site]
00212
memcmp
[call site]
00213
memcmp
[call site]
00214
memcmp
[call site]
00215
memcmp
[call site]
00216
parse_version
[function]
[call site]
00217
memcmp
[call site]
00218
cmp_nonblank
[function]
[call site]
00219
isspace_c
[function]
[call site]
00220
__ctype_b_loc
[call site]
00221
memcmp
[call site]
00222
is_fastaq
[function]
[call site]
00223
is_fastaq
[function]
[call site]
00227
parse_tabbed_text
[function]
[call site]
00228
isdigit_c
[function]
[call site]
00229
strchr
[call site]
00230
isdigit_c
[function]
[call site]
00231
colmatch
[function]
[call site]
00232
colmatch
[function]
[call site]
00233
strstr
[call site]
00234
colmatch
[function]
[call site]
00235
strstr
[call site]
00236
colmatch
[function]
[call site]
00237
colmatch
[function]
[call site]
00238
is_text_only
[function]
[call site]
00239
__errno_location
[call site]
00240
hopen_htsget_redirect
[function]
[call site]
00241
hfile_init
[function]
[call site]
00242
parse_ga4gh_redirect_json
[function]
[call site]
00243
hts_json_fnext
[function]
[call site]
00244
hgetc
[function]
[call site]
00245
hgetc2
[function]
[call site]
00246
refill_buffer
[function]
[call site]
00247
fscan_string
[function]
[call site]
00248
hgetc
[function]
[call site]
00249
hgetc
[function]
[call site]
00250
kputc
[function]
[call site]
00251
kputc
[function]
[call site]
00252
kputc
[function]
[call site]
00253
kputc
[function]
[call site]
00254
kputc
[function]
[call site]
00255
kputc
[function]
[call site]
00256
hgetc
[function]
[call site]
00257
dehex
[function]
[call site]
00258
hgetc
[function]
[call site]
00259
dehex
[function]
[call site]
00260
hgetc
[function]
[call site]
00261
dehex
[function]
[call site]
00262
hgetc
[function]
[call site]
00263
dehex
[function]
[call site]
00264
encode_utf8
[function]
[call site]
00265
kputsn
[function]
[call site]
00266
kputc
[function]
[call site]
00267
kputsn
[function]
[call site]
00268
kputc
[function]
[call site]
00269
hpeek
[function]
[call site]
00270
strchr
[call site]
00271
hgetc
[function]
[call site]
00272
kputc
[function]
[call site]
00273
token_type
[function]
[call site]
00274
hts_json_fnext
[function]
[call site]
00278
strcmp
[call site]
00279
parse_ga4gh_body_json
[function]
[call site]
00280
hts_json_fnext
[function]
[call site]
00281
hts_json_fnext
[function]
[call site]
00282
strcmp
[call site]
00283
hts_json_fnext
[function]
[call site]
00284
hts_json_fnext
[function]
[call site]
00285
hts_realloc_or_die
[function]
[call site]
00286
__errno_location
[call site]
00287
realloc
[call site]
00288
__errno_location
[call site]
00289
strerror
[call site]
00290
hts_log
[function]
[call site]
00291
exit
[call site]
00292
hts_json_fnext
[function]
[call site]
00293
strcmp
[call site]
00294
hts_json_fnext
[function]
[call site]
00295
ks_release
[function]
[call site]
00296
strcmp
[call site]
00297
hts_json_fnext
[function]
[call site]
00298
hts_json_fnext
[function]
[call site]
00299
hts_json_fnext
[function]
[call site]
00300
kputs
[function]
[call site]
00301
__errno_location
[call site]
00302
strlen
[call site]
00303
kputsn
[function]
[call site]
00304
kputs
[function]
[call site]
00305
hts_realloc_or_die
[function]
[call site]
00306
ks_release
[function]
[call site]
00307
hts_json_fskip_value
[function]
[call site]
00308
skip_value
[function]
[call site]
00309
fnext
[function]
[call site]
00310
hts_json_fnext
[function]
[call site]
00311
strcmp
[call site]
00312
hts_json_fnext
[function]
[call site]
00313
hts_log
[function]
[call site]
00314
hts_json_fskip_value
[function]
[call site]
00315
hts_json_fnext
[function]
[call site]
00316
free_all_parts
[function]
[call site]
00317
free_part
[function]
[call site]
00318
hfile_destroy
[function]
[call site]
00319
__errno_location
[call site]
00320
hclose_abruptly
[function]
[call site]
00321
__errno_location
[call site]
00322
hfile_destroy
[function]
[call site]
00323
__errno_location
[call site]
00324
hts_crypt4gh_redirect
[function]
[call site]
00325
strlen
[call site]
00326
snprintf
[call site]
00327
strchr
[call site]
00328
snprintf
[call site]
00329
hopen
[function]
[call site]
00330
hts_detect_format2
[function]
[call site]
00331
strchr
[call site]
00332
strchr
[call site]
00333
strchr
[call site]
00334
strchr
[call site]
00335
strchr
[call site]
00336
strchr
[call site]
00337
strchr
[call site]
00338
strchr
[call site]
00339
abort
[call site]
00340
format_category
[function]
[call site]
00341
__errno_location
[call site]
00342
bgzf_hopen
[function]
[call site]
00343
strchr
[call site]
00344
bgzf_read_init
[function]
[call site]
00345
hpeek
[function]
[call site]
00346
calloc
[call site]
00347
memcmp
[call site]
00348
memcmp
[call site]
00349
hts_log
[function]
[call site]
00350
razf_info
[function]
[call site]
00351
strcmp
[call site]
00352
hseek
[function]
[call site]
00353
writebuffer_is_nonempty
[function]
[call site]
00354
flush_buffer
[function]
[call site]
00355
__errno_location
[call site]
00356
htell
[function]
[call site]
00357
__errno_location
[call site]
00358
__errno_location
[call site]
00359
__errno_location
[call site]
00360
hread
[function]
[call site]
00361
hread2
[function]
[call site]
00362
__errno_location
[call site]
00363
refill_buffer
[function]
[call site]
00364
ed_is_big
[function]
[call site]
00365
ed_swap_8p
[function]
[call site]
00366
ed_swap_8
[function]
[call site]
00367
hts_log
[function]
[call site]
00368
hts_log
[function]
[call site]
00369
__errno_location
[call site]
00370
kh_init_cache
[function]
[call site]
00371
calloc
[call site]
00372
strchr
[call site]
00373
bgzf_write_init
[function]
[call site]
00374
calloc
[call site]
00375
mode2level
[function]
[call site]
00376
strchr
[call site]
00377
strchr
[call site]
00378
calloc
[call site]
00379
deflateInit2_
[call site]
00380
bgzf_zerr
[function]
[call site]
00381
strerror
[call site]
00382
snprintf
[call site]
00383
hts_log
[function]
[call site]
00384
__errno_location
[call site]
00385
strerror
[call site]
00386
hts_log
[function]
[call site]
00387
__errno_location
[call site]
00388
ed_is_big
[function]
[call site]
00389
cram_dopen
[function]
[call site]
00390
calloc
[call site]
00391
cram_read_file_def
[function]
[call site]
00392
hread
[function]
[call site]
00393
memcmp
[call site]
00394
hts_log
[function]
[call site]
00395
cram_init_tables
[function]
[call site]
00396
cram_init_varint
[function]
[call site]
00397
cram_read_SAM_hdr
[function]
[call site]
00398
int32_decode
[function]
[call site]
00399
hread
[function]
[call site]
00400
hread
[function]
[call site]
00401
cram_read_container
[function]
[call site]
00402
int32_decode
[function]
[call site]
00403
crc32
[call site]
00404
calloc
[call site]
00405
__errno_location
[call site]
00406
cram_free_container
[function]
[call site]
00407
cram_free_compression_header
[function]
[call site]
00408
kh_destroy_map
[function]
[call site]
00409
cram_free_block
[function]
[call site]
00410
kh_destroy_m_s2i
[function]
[call site]
00411
string_pool_destroy
[function]
[call site]
00412
cram_free_block
[function]
[call site]
00413
cram_free_slice
[function]
[call site]
00414
cram_free_block
[function]
[call site]
00415
cram_free_block
[function]
[call site]
00416
cram_free_block
[function]
[call site]
00417
cram_free_slice_header
[function]
[call site]
00418
cram_free_block
[function]
[call site]
00419
cram_free_block
[function]
[call site]
00420
cram_free_block
[function]
[call site]
00421
cram_free_block
[function]
[call site]
00422
cram_free_block
[function]
[call site]
00423
cram_free_block
[function]
[call site]
00424
string_pool_destroy
[function]
[call site]
00425
kh_destroy_m_s2i
[function]
[call site]
00426
kh_destroy_m_s2i
[function]
[call site]
00427
cram_free_slice
[function]
[call site]
00428
cram_stats_free
[function]
[call site]
00429
kh_destroy_m_i2i
[function]
[call site]
00430
cram_free_block
[function]
[call site]
00431
cram_free_block
[function]
[call site]
00432
kh_destroy_m_tagmap
[function]
[call site]
00433
free_bam_list
[function]
[call site]
00434
bam_destroy1
[function]
[call site]
00435
bam_get_mempolicy
[function]
[call site]
00436
bam_get_mempolicy
[function]
[call site]
00437
bam_get_mempolicy
[function]
[call site]
00438
__errno_location
[call site]
00439
cram_free_container
[function]
[call site]
00440
cram_free_container
[function]
[call site]
00441
int32_decode
[function]
[call site]
00442
cram_free_container
[function]
[call site]
00443
hts_log
[function]
[call site]
00444
cram_free_container
[function]
[call site]
00445
cram_free_container
[function]
[call site]
00446
cram_read_block
[function]
[call site]
00447
hgetc
[function]
[call site]
00448
crc32
[call site]
00449
hgetc
[function]
[call site]
00450
crc32
[call site]
00451
hread
[function]
[call site]
00452
hread
[function]
[call site]
00453
int32_decode
[function]
[call site]
00454
cram_free_container
[function]
[call site]
00455
cram_uncompress_block
[function]
[call site]
00456
crc32
[call site]
00457
hts_log
[function]
[call site]
00458
__assert_fail
[call site]
00459
zlib_mem_inflate
[function]
[call site]
00460
inflateInit2_
[call site]
00461
hts_log
[function]
[call site]
00462
inflate
[call site]
00463
hts_log
[function]
[call site]
00464
inflateEnd
[call site]
00465
realloc
[call site]
00466
inflateEnd
[call site]
00467
inflateEnd
[call site]
00468
BZ2_bzBuffToBuffDecompress
[call site]
00469
lzma_mem_inflate
[function]
[call site]
00470
lzma_easy_decoder_memusage
[call site]
00471
lzma_stream_decoder
[call site]
00472
realloc
[call site]
00473
lzma_code
[call site]
00474
hts_log
[function]
[call site]
00475
lzma_code
[call site]
00476
hts_log
[function]
[call site]
00477
realloc
[call site]
00478
lzma_end
[call site]
00479
lzma_end
[call site]
00480
rans_uncompress
[function]
[call site]
00481
rans_uncompress_O1
[function]
[call site]
00482
htscodecs_tls_calloc
[function]
[call site]
00483
htscodecs_tls_alloc
[function]
[call site]
00484
pthread_once
[call site]
00485
htscodecs_tls_init
[function]
[call site]
00486
pthread_key_create
[call site]
00487
htscodecs_tls_free_all
[function]
[call site]
00488
fprintf
[call site]
00489
strerror
[call site]
00490
fprintf
[call site]
00491
pthread_getspecific
[call site]
00492
calloc
[call site]
00493
pthread_setspecific
[call site]
00494
fprintf
[call site]
00495
calloc
[call site]
00496
RansDecSymbolInit32
[function]
[call site]
00497
__assert_fail
[call site]
00498
__assert_fail
[call site]
00499
RansDecInit
[function]
[call site]
00500
RansDecInit
[function]
[call site]
00501
RansDecInit
[function]
[call site]
00502
RansDecInit
[function]
[call site]
00503
RansDecAdvanceStep
[function]
[call site]
00504
RansDecAdvanceStep
[function]
[call site]
00505
RansDecAdvanceStep
[function]
[call site]
00506
RansDecAdvanceStep
[function]
[call site]
00507
RansDecRenorm2
[function]
[call site]
00508
RansDecRenorm2
[function]
[call site]
00509
RansDecRenormSafe
[function]
[call site]
00510
RansDecRenormSafe
[function]
[call site]
00511
RansDecRenormSafe
[function]
[call site]
00512
RansDecRenormSafe
[function]
[call site]
00513
RansDecGet
[function]
[call site]
00514
RansDecRenormSafe
[function]
[call site]
00515
htscodecs_tls_free
[function]
[call site]
00516
rans_uncompress_O0
[function]
[call site]
00520
RansDecInit
[function]
[call site]
00521
RansDecInit
[function]
[call site]
00522
RansDecInit
[function]
[call site]
00523
RansDecInit
[function]
[call site]
00524
RansDecRenorm2
[function]
[call site]
00525
RansDecRenorm2
[function]
[call site]
00526
RansDecRenormSafe
[function]
[call site]
00527
RansDecRenormSafe
[function]
[call site]
00528
RansDecRenormSafe
[function]
[call site]
00529
RansDecRenormSafe
[function]
[call site]
00530
fqz_decompress
[function]
[call site]
00531
uncompress_block_fqz2f
[function]
[call site]
00532
var_get_u32
[function]
[call site]
00533
fqz_read_parameters
[function]
[call site]
00534
read_array
[function]
[call site]
00535
fqz_read_parameters1
[function]
[call site]
00536
read_array
[function]
[call site]
00537
read_array
[function]
[call site]
00538
read_array
[function]
[call site]
00539
fqz_free_parameters
[function]
[call site]
00540
fqz_create_models
[function]
[call site]
00541
htscodecs_tls_alloc
[function]
[call site]
00542
SIMPLE_MODEL256_init
[function]
[call site]
00543
SIMPLE_MODEL256_init
[function]
[call site]
00544
SIMPLE_MODEL2_init
[function]
[call site]
00545
SIMPLE_MODEL2_init
[function]
[call site]
00546
SIMPLE_MODEL256_init
[function]
[call site]
00547
RC_SetInput
[function]
[call site]
00548
RC_StartDecode
[function]
[call site]
00549
realloc
[call site]
00550
realloc
[call site]
00551
decompress_new_read
[function]
[call site]
00552
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00553
RC_GetFreq
[function]
[call site]
00554
RC_Decode
[function]
[call site]
00555
SIMPLE_MODEL256_normalize
[function]
[call site]
00556
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00557
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00558
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00559
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00560
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00561
SIMPLE_MODEL2_normalize
[function]
[call site]
00562
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00563
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00564
fqz_update_ctx
[function]
[call site]
00565
realloc
[call site]
00566
realloc
[call site]
00567
RC_FinishDecode
[function]
[call site]
00568
fqz_destroy_models
[function]
[call site]
00569
htscodecs_tls_free
[function]
[call site]
00570
fqz_free_parameters
[function]
[call site]
00571
fqz_destroy_models
[function]
[call site]
00572
fqz_free_parameters
[function]
[call site]
00573
rans_uncompress_4x16
[function]
[call site]
00574
rans_uncompress_to_4x16
[function]
[call site]
00575
var_get_u32
[function]
[call site]
00576
var_get_u32
[function]
[call site]
00577
rans_uncompress_to_4x16
[function]
[call site]
00578
unstripe
[function]
[call site]
00579
var_get_u32
[function]
[call site]
00580
hts_unpack_meta
[function]
[call site]
00581
var_get_u32
[function]
[call site]
00582
var_get_u32
[function]
[call site]
00583
var_get_u32
[function]
[call site]
00584
var_get_u32
[function]
[call site]
00585
rans_dec_func
[function]
[call site]
00586
pthread_once
[call site]
00587
htscodecs_tls_cpu_init
[function]
[call site]
00588
__get_cpuid_max
[function]
[call site]
00589
strerror
[call site]
00590
fprintf
[call site]
00591
fprintf
[call site]
00592
rans_dec_func
[function]
[call site]
00593
hts_rle_decode
[function]
[call site]
00594
var_get_u32
[function]
[call site]
00595
hts_unpack
[function]
[call site]
00596
arith_uncompress_to
[function]
[call site]
00597
var_get_u32
[function]
[call site]
00598
var_get_u32
[function]
[call site]
00599
arith_uncompress_to
[function]
[call site]
00600
unstripe
[function]
[call site]
00601
var_get_u32
[function]
[call site]
00602
hts_unpack_meta
[function]
[call site]
00603
var_get_u32
[function]
[call site]
00604
BZ2_bzBuffToBuffDecompress
[call site]
00605
arith_uncompress_O1_RLE
[function]
[call site]
00606
htscodecs_tls_alloc
[function]
[call site]
00607
SIMPLE_MODEL256_init
[function]
[call site]
00608
htscodecs_tls_alloc
[function]
[call site]
00609
htscodecs_tls_free
[function]
[call site]
00610
SIMPLE_MODEL258_init
[function]
[call site]
00611
RC_SetInput
[function]
[call site]
00612
RC_StartDecode
[function]
[call site]
00613
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00614
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00615
SIMPLE_MODEL258_normalize
[function]
[call site]
00616
RC_FinishDecode
[function]
[call site]
00617
htscodecs_tls_free
[function]
[call site]
00618
htscodecs_tls_free
[function]
[call site]
00619
htscodecs_tls_free
[function]
[call site]
00620
htscodecs_tls_free
[function]
[call site]
00621
arith_uncompress_O0_RLE
[function]
[call site]
00622
SIMPLE_MODEL256_init
[function]
[call site]
00623
htscodecs_tls_alloc
[function]
[call site]
00624
SIMPLE_MODEL258_init
[function]
[call site]
00625
RC_SetInput
[function]
[call site]
00626
RC_StartDecode
[function]
[call site]
00627
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00628
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00629
RC_FinishDecode
[function]
[call site]
00630
htscodecs_tls_free
[function]
[call site]
00631
htscodecs_tls_free
[function]
[call site]
00632
arith_uncompress_O1
[function]
[call site]
00633
htscodecs_tls_alloc
[function]
[call site]
00634
SIMPLE_MODEL256_init
[function]
[call site]
00635
RC_SetInput
[function]
[call site]
00636
RC_StartDecode
[function]
[call site]
00637
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00638
RC_FinishDecode
[function]
[call site]
00639
htscodecs_tls_free
[function]
[call site]
00640
htscodecs_tls_free
[function]
[call site]
00641
arith_uncompress_O0
[function]
[call site]
00642
SIMPLE_MODEL256_init
[function]
[call site]
00643
RC_SetInput
[function]
[call site]
00644
RC_StartDecode
[function]
[call site]
00645
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00646
RC_FinishDecode
[function]
[call site]
00647
hts_unpack
[function]
[call site]
00648
tok3_decode_names
[function]
[call site]
00649
create_context
[function]
[call site]
00650
fprintf
[call site]
00651
htscodecs_tls_alloc
[function]
[call site]
00652
uncompressed_size
[function]
[call site]
00653
var_get_u32
[function]
[call site]
00654
var_get_u32
[function]
[call site]
00655
uncompress
[function]
[call site]
00656
var_get_u32
[function]
[call site]
00657
arith_decode
[function]
[call site]
00658
var_get_u32
[function]
[call site]
00659
arith_uncompress_to
[function]
[call site]
00660
rans_decode
[function]
[call site]
00661
var_get_u32
[function]
[call site]
00662
rans_uncompress_to_4x16
[function]
[call site]
00663
decode_name
[function]
[call site]
00664
decode_token_type
[function]
[call site]
00665
decode_token_int
[function]
[call site]
00666
strlen
[call site]
00667
strcpy
[call site]
00668
strlen
[call site]
00669
decode_token_type
[function]
[call site]
00670
decode_token_char
[function]
[call site]
00671
decode_token_alpha
[function]
[call site]
00672
decode_token_int1
[function]
[call site]
00673
decode_token_int
[function]
[call site]
00674
append_uint32_fixed
[function]
[call site]
00675
decode_token_int1
[function]
[call site]
00676
append_uint32_fixed
[function]
[call site]
00677
decode_token_int
[function]
[call site]
00678
append_uint32_var
[function]
[call site]
00679
decode_token_int1
[function]
[call site]
00680
append_uint32_var
[function]
[call site]
00681
append_uint32_var
[function]
[call site]
00682
append_uint32_fixed
[function]
[call site]
00683
realloc
[call site]
00684
free_context
[function]
[call site]
00685
pool_destroy
[function]
[call site]
00686
htscodecs_tls_free
[function]
[call site]
00687
free_context
[function]
[call site]
00688
cram_free_container
[function]
[call site]
00689
cram_free_block
[function]
[call site]
00690
int32_get_blk
[function]
[call site]
00691
cram_free_container
[function]
[call site]
00692
cram_free_block
[function]
[call site]
00693
cram_free_container
[function]
[call site]
00694
cram_free_block
[function]
[call site]
00695
cram_free_block
[function]
[call site]
00696
cram_read_block
[function]
[call site]
00697
cram_free_container
[function]
[call site]
00698
cram_free_block
[function]
[call site]
00699
cram_free_container
[function]
[call site]
00700
hread
[function]
[call site]
00701
cram_free_container
[function]
[call site]
00702
cram_free_container
[function]
[call site]
00703
sam_hdr_init
[function]
[call site]
00704
calloc
[call site]
00705
sam_hdr_add_lines
[function]
[call site]
00706
sam_hdr_fill_hrecs
[function]
[call site]
00707
sam_hrecs_new
[function]
[call site]
00708
calloc
[call site]
00709
kh_init_sam_hrecs_t
[function]
[call site]
00710
calloc
[call site]
00711
kh_init_m_s2i
[function]
[call site]
00712
calloc
[call site]
00713
kh_init_m_s2i
[function]
[call site]
00714
kh_init_m_s2i
[function]
[call site]
00715
pool_create
[function]
[call site]
00716
next_power_2
[function]
[call site]
00717
pool_create
[function]
[call site]
00718
string_pool_create
[function]
[call site]
00719
sam_hrecs_init_type_order
[function]
[call site]
00720
calloc
[call site]
00721
kh_destroy_sam_hrecs_t
[function]
[call site]
00722
pool_destroy
[function]
[call site]
00723
pool_destroy
[function]
[call site]
00724
string_pool_destroy
[function]
[call site]
00725
sam_hrecs_refs_from_targets_array
[function]
[call site]
00726
hts_log
[function]
[call site]
00727
realloc
[call site]
00728
string_dup
[function]
[call site]
00729
strlen
[call site]
00730
string_ndup
[function]
[call site]
00731
string_alloc
[function]
[call site]
00732
new_string_pool
[function]
[call site]
00733
realloc
[call site]
00734
kh_get_s2i
[function]
[call site]
00735
__ac_FNV1a_hash_string
[function]
[call site]
00736
strcmp
[call site]
00737
kh_put_m_s2i
[function]
[call site]
00738
kh_resize_m_s2i
[function]
[call site]
00739
realloc
[call site]
00740
__ac_FNV1a_hash_string
[function]
[call site]
00741
strcmp
[call site]
00742
hts_log
[function]
[call site]
00743
__errno_location
[call site]
00744
strerror
[call site]
00745
hts_log
[function]
[call site]
00746
kh_get_m_s2i
[function]
[call site]
00747
kh_del_m_s2i
[function]
[call site]
00748
sam_hrecs_free
[function]
[call site]
00749
kh_destroy_sam_hrecs_t
[function]
[call site]
00750
kh_destroy_m_s2i
[function]
[call site]
00751
kh_destroy_m_s2i
[function]
[call site]
00752
kh_destroy_m_s2i
[function]
[call site]
00753
pool_destroy
[function]
[call site]
00754
pool_destroy
[function]
[call site]
00755
string_pool_destroy
[function]
[call site]
00756
sam_hrecs_parse_lines
[function]
[call site]
00757
strlen
[call site]
00758
sam_hrecs_error
[function]
[call site]
00759
hts_log
[function]
[call site]
00760
sam_hrecs_error
[function]
[call site]
00761
isalpha_c
[function]
[call site]
00762
__ctype_b_loc
[call site]
00763
sam_hrecs_error
[function]
[call site]
00764
TYPEKEY
[function]
[call site]
00765
pool_alloc
[function]
[call site]
00766
new_pool
[function]
[call site]
00767
realloc
[call site]
00768
kh_put_sam_hrecs_t
[function]
[call site]
00769
kh_resize_sam_hrecs_t
[function]
[call site]
00770
realloc
[call site]
00771
sam_hrecs_global_list_add
[function]
[call site]
00772
TYPEKEY
[function]
[call site]
00773
__assert_fail
[call site]
00774
TYPEKEY
[function]
[call site]
00775
sam_hrecs_error
[function]
[call site]
00776
pool_alloc
[function]
[call site]
00777
string_ndup
[function]
[call site]
00778
sam_hrecs_error
[function]
[call site]
00779
sam_hrecs_error
[function]
[call site]
00780
pool_alloc
[function]
[call site]
00781
string_ndup
[function]
[call site]
00782
sam_hrecs_update_hashes
[function]
[call site]
00783
TYPEKEY
[function]
[call site]
00784
__assert_fail
[call site]
00785
__assert_fail
[call site]
00786
strtoll
[call site]
00787
__assert_fail
[call site]
00788
hts_log
[function]
[call site]
00789
hts_log
[function]
[call site]
00790
hts_log
[function]
[call site]
00791
kh_get_m_s2i
[function]
[call site]
00792
snprintf
[call site]
00793
sam_hrecs_update
[function]
[call site]
00794
sam_hrecs_vupdate
[function]
[call site]
00795
sam_hrecs_find_key
[function]
[call site]
00796
pool_alloc
[function]
[call site]
00797
strlen
[call site]
00798
string_alloc
[function]
[call site]
00799
snprintf
[call site]
00800
sam_hrecs_add_ref_altnames
[function]
[call site]
00801
kstrtok
[function]
[call site]
00802
strchr
[call site]
00803
strlen
[call site]
00804
string_ndup
[function]
[call site]
00805
kh_put_m_s2i
[function]
[call site]
00806
hts_log
[function]
[call site]
00807
strcmp
[call site]
00808
sam_hrecs_add_ref_altnames
[function]
[call site]
00809
strcmp
[call site]
00810
hts_log
[function]
[call site]
00811
hts_log
[function]
[call site]
00812
realloc
[call site]
00813
kh_put_m_s2i
[function]
[call site]
00814
sam_hrecs_add_ref_altnames
[function]
[call site]
00815
TYPEKEY
[function]
[call site]
00816
sam_hrecs_find_key
[function]
[call site]
00817
hts_log
[function]
[call site]
00818
__assert_fail
[call site]
00819
kh_get_m_s2i
[function]
[call site]
00820
__assert_fail
[call site]
00821
hts_log
[function]
[call site]
00822
realloc
[call site]
00823
kh_put_m_s2i
[function]
[call site]
00824
TYPEKEY
[function]
[call site]
00825
realloc
[call site]
00826
__assert_fail
[call site]
00827
hts_log
[function]
[call site]
00828
kh_get_m_s2i
[function]
[call site]
00829
kh_put_m_s2i
[function]
[call site]
00830
realloc
[call site]
00831
sam_hrecs_free
[function]
[call site]
00832
add_stub_ref_sq_lines
[function]
[call site]
00833
snprintf
[call site]
00834
sam_hrecs_add
[function]
[call site]
00835
sam_hrecs_vadd
[function]
[call site]
00836
TYPEKEY
[function]
[call site]
00837
strncmp
[call site]
00838
sam_hrecs_find_type_id
[function]
[call site]
00839
kh_get_m_s2i
[function]
[call site]
00840
kh_get_m_s2i
[function]
[call site]
00841
kh_get_m_s2i
[function]
[call site]
00842
TYPEKEY
[function]
[call site]
00843
kh_get_sam_hrecs_t
[function]
[call site]
00844
sam_hrecs_vupdate
[function]
[call site]
00845
pool_alloc
[function]
[call site]
00846
kh_put_sam_hrecs_t
[function]
[call site]
00847
__assert_fail
[call site]
00848
sam_hrecs_global_list_add
[function]
[call site]
00849
__assert_fail
[call site]
00850
__assert_fail
[call site]
00851
__assert_fail
[call site]
00852
__assert_fail
[call site]
00853
strncmp
[call site]
00854
pool_alloc
[function]
[call site]
00855
strncmp
[call site]
00856
strlen
[call site]
00857
string_alloc
[function]
[call site]
00858
snprintf
[call site]
00859
strlen
[call site]
00860
string_ndup
[function]
[call site]
00861
strncmp
[call site]
00862
pool_alloc
[function]
[call site]
00863
strncmp
[call site]
00864
strlen
[call site]
00865
string_alloc
[function]
[call site]
00866
snprintf
[call site]
00867
strlen
[call site]
00868
string_ndup
[function]
[call site]
00869
TYPEKEY
[function]
[call site]
00870
sam_hrecs_update_hashes
[function]
[call site]
00871
strncmp
[call site]
00872
hts_log
[function]
[call site]
00873
sam_hrecs_free
[function]
[call site]
00874
rebuild_target_arrays
[function]
[call site]
00875
sam_hdr_update_target_arrays
[function]
[call site]
00876
realloc
[call site]
00877
realloc
[call site]
00878
strcmp
[call site]
00879
strdup
[call site]
00880
kh_get_s2i
[function]
[call site]
00881
kh_del_s2i
[function]
[call site]
00882
kh_init_s2i
[function]
[call site]
00883
calloc
[call site]
00884
kh_put_s2i
[function]
[call site]
00885
kh_resize_s2i
[function]
[call site]
00886
realloc
[call site]
00887
kh_get_s2i
[function]
[call site]
00888
kh_del_s2i
[function]
[call site]
00889
sam_hrecs_parse_lines
[function]
[call site]
00890
rebuild_target_arrays
[function]
[call site]
00891
redact_header_text
[function]
[call site]
00892
__assert_fail
[call site]
00893
sam_hdr_destroy
[function]
[call site]
00894
sam_hrecs_free
[function]
[call site]
00895
kh_destroy_s2i
[function]
[call site]
00896
cram_free_file_def
[function]
[call site]
00897
calloc
[call site]
00898
strncpy
[call site]
00899
cram_init_tables
[function]
[call site]
00900
strrchr
[call site]
00901
strdup
[call site]
00902
refs_create
[function]
[call site]
00903
calloc
[call site]
00904
string_pool_create
[function]
[call site]
00905
kh_init_refs
[function]
[call site]
00906
calloc
[call site]
00907
pthread_mutex_init
[call site]
00908
refs_free
[function]
[call site]
00909
string_pool_destroy
[function]
[call site]
00910
ref_entry_free_seq
[function]
[call site]
00911
mfclose
[function]
[call site]
00912
mfflush
[function]
[call site]
00913
fwrite
[call site]
00914
fflush
[call site]
00915
fseek
[call site]
00916
fwrite
[call site]
00917
fflush
[call site]
00918
ftell
[call site]
00919
fileno
[call site]
00920
ftell
[call site]
00921
ftruncate
[call site]
00922
munmap
[call site]
00923
fclose
[call site]
00924
mfdestroy
[function]
[call site]
00925
kh_destroy_refs
[function]
[call site]
00926
bgzf_close
[function]
[call site]
00927
bgzf_flush
[function]
[call site]
00928
mt_queue
[function]
[call site]
00929
pthread_mutex_lock
[call site]
00930
pool_alloc
[function]
[call site]
00931
pthread_mutex_unlock
[call site]
00932
hts_tpool_dispatch3
[function]
[call site]
00933
pthread_mutex_lock
[call site]
00934
pthread_mutex_unlock
[call site]
00935
__errno_location
[call site]
00936
pthread_mutex_unlock
[call site]
00937
pthread_cond_wait
[call site]
00938
pthread_mutex_unlock
[call site]
00939
wake_next_worker
[function]
[call site]
00940
pthread_mutex_lock
[call site]
00941
__assert_fail
[call site]
00942
__assert_fail
[call site]
00943
pthread_cond_signal
[call site]
00944
pthread_mutex_unlock
[call site]
00945
pthread_mutex_unlock
[call site]
00946
bgzf_encode_level0_func
[function]
[call site]
00947
u16_to_le
[function]
[call site]
00948
u16_to_le
[function]
[call site]
00949
u16_to_le
[function]
[call site]
00950
hts_crc32
[function]
[call site]
00951
crc32
[call site]
00952
u32_to_le
[function]
[call site]
00953
u32_to_le
[function]
[call site]
00954
job_cleanup
[function]
[call site]
00955
pthread_mutex_lock
[call site]
00956
pool_free
[function]
[call site]
00957
pthread_mutex_unlock
[call site]
00958
hts_tpool_dispatch3
[function]
[call site]
00959
bgzf_encode_func
[function]
[call site]
00960
bgzf_compress
[function]
[call site]
00961
u16_to_le
[function]
[call site]
00962
u16_to_le
[function]
[call site]
00963
deflateInit2_
[call site]
00964
bgzf_zerr
[function]
[call site]
00965
hts_log
[function]
[call site]
00966
deflate
[call site]
00967
deflateEnd
[call site]
00968
bgzf_zerr
[function]
[call site]
00969
hts_log
[function]
[call site]
00970
deflateEnd
[call site]
00971
deflateEnd
[call site]
00972
bgzf_zerr
[function]
[call site]
00973
hts_log
[function]
[call site]
00974
packInt16
[function]
[call site]
00975
crc32
[call site]
00976
packInt32
[function]
[call site]
00977
packInt32
[function]
[call site]
00978
job_cleanup
[function]
[call site]
00979
job_cleanup
[function]
[call site]
00980
pthread_mutex_lock
[call site]
00981
pthread_mutex_unlock
[call site]
00982
mt_flush_queue
[function]
[call site]
00983
pthread_mutex_lock
[call site]
00984
hts_tpool_process_is_shutdown
[function]
[call site]
00985
pthread_mutex_lock
[call site]
00986
pthread_mutex_unlock
[call site]
00987
pthread_mutex_unlock
[call site]
00988
hts_usleep
[function]
[call site]
00989
nanosleep
[call site]
00990
pthread_mutex_lock
[call site]
00991
pthread_mutex_unlock
[call site]
00992
hts_tpool_process_flush
[function]
[call site]
00993
pthread_mutex_lock
[call site]
00994
pthread_cond_signal
[call site]
00995
pthread_cond_wait
[call site]
00996
gettimeofday
[call site]
00997
pthread_cond_timedwait
[call site]
00998
gettimeofday
[call site]
00999
pthread_cond_timedwait
[call site]
01000
pthread_mutex_unlock
[call site]
01001
pthread_mutex_lock
[call site]
01002
pthread_mutex_unlock
[call site]
01003
hflush
[function]
[call site]
01004
flush_buffer
[function]
[call site]
01005
__errno_location
[call site]
01006
bgzf_index_add_block
[function]
[call site]
01007
realloc
[call site]
01008
deflate_block
[function]
[call site]
01009
bgzf_compress
[function]
[call site]
01010
bgzf_gzip_compress
[function]
[call site]
01011
deflate
[call site]
01012
bgzf_zerr
[function]
[call site]
01013
hts_log
[function]
[call site]
01014
hts_log
[function]
[call site]
01015
hts_log
[function]
[call site]
01016
bgzf_zerr
[function]
[call site]
01017
hts_log
[function]
[call site]
01018
hwrite
[function]
[call site]
01019
hfile_set_blksize
[function]
[call site]
01020
realloc
[call site]
01021
hwrite2
[function]
[call site]
01022
flush_buffer
[function]
[call site]
01023
__errno_location
[call site]
01024
hwrite2
[function]
[call site]
01025
hts_log
[function]
[call site]
01026
bgzf_close_mt
[function]
[call site]
01027
mt_destroy
[function]
[call site]
01028
pthread_mutex_lock
[call site]
01029
pthread_cond_signal
[call site]
01030
hts_tpool_wake_dispatch
[function]
[call site]
01031
pthread_mutex_lock
[call site]
01032
pthread_cond_signal
[call site]
01033
pthread_mutex_unlock
[call site]
01034
pthread_mutex_unlock
[call site]
01035
hts_tpool_process_is_shutdown
[function]
[call site]
01036
hts_tpool_process_destroy
[function]
[call site]
01037
pthread_mutex_lock
[call site]
01038
pthread_mutex_unlock
[call site]
01039
hts_tpool_process_reset
[function]
[call site]
01040
pthread_mutex_lock
[call site]
01041
pthread_mutex_unlock
[call site]
01042
hts_tpool_delete_result
[function]
[call site]
01043
hts_tpool_process_flush
[function]
[call site]
01044
pthread_mutex_lock
[call site]
01045
pthread_cond_signal
[call site]
01046
pthread_mutex_unlock
[call site]
01047
hts_tpool_delete_result
[function]
[call site]
01048
pthread_mutex_lock
[call site]
01049
hts_tpool_process_detach_locked
[function]
[call site]
01050
hts_tpool_process_shutdown_locked
[function]
[call site]
01051
pthread_cond_broadcast
[call site]
01052
pthread_cond_broadcast
[call site]
01053
pthread_cond_broadcast
[call site]
01054
pthread_cond_broadcast
[call site]
01055
pthread_mutex_unlock
[call site]
01056
pthread_cond_destroy
[call site]
01057
pthread_cond_destroy
[call site]
01058
pthread_cond_destroy
[call site]
01059
pthread_cond_destroy
[call site]
01060
pthread_mutex_unlock
[call site]
01061
pthread_join
[call site]
01062
pthread_mutex_destroy
[call site]
01063
pthread_mutex_destroy
[call site]
01064
pthread_mutex_destroy
[call site]
01065
pthread_cond_destroy
[call site]
01066
pool_free
[function]
[call site]
01067
hts_tpool_destroy
[function]
[call site]
01068
pthread_mutex_lock
[call site]
01069
pthread_cond_signal
[call site]
01070
pthread_mutex_unlock
[call site]
01071
pthread_join
[call site]
01072
pthread_mutex_destroy
[call site]
01073
pthread_cond_destroy
[call site]
01074
pool_destroy
[function]
[call site]
01075
fflush
[call site]
01076
deflate_block
[function]
[call site]
01077
bgzf_zerr
[function]
[call site]
01078
hts_log
[function]
[call site]
01079
bgzf_close_mt
[function]
[call site]
01080
hwrite
[function]
[call site]
01081
hflush
[function]
[call site]
01082
hts_log
[function]
[call site]
01083
bgzf_close_mt
[function]
[call site]
01084
inflateEnd
[call site]
01085
deflateEnd
[call site]
01086
bgzf_zerr
[function]
[call site]
01087
hts_log
[function]
[call site]
01088
hclose
[function]
[call site]
01089
writebuffer_is_nonempty
[function]
[call site]
01090
hflush
[function]
[call site]
01091
__errno_location
[call site]
01092
hfile_destroy
[function]
[call site]
01093
__errno_location
[call site]
01094
bgzf_index_destroy
[function]
[call site]
01095
free_cache
[function]
[call site]
01096
kh_destroy_cache
[function]
[call site]
01097
pthread_mutex_destroy
[call site]
01098
pthread_mutex_init
[call site]
01099
pthread_mutex_init
[call site]
01100
pthread_mutex_init
[call site]
01101
pthread_mutex_init
[call site]
01102
cram_new_metrics
[function]
[call site]
01103
calloc
[call site]
01104
kh_init_m_metrics
[function]
[call site]
01105
calloc
[call site]
01106
refs_from_header
[function]
[call site]
01107
sam_hdr_fill_hrecs
[function]
[call site]
01108
realloc
[call site]
01109
kh_get_refs
[function]
[call site]
01110
__ac_FNV1a_hash_string
[function]
[call site]
01111
strcmp
[call site]
01112
calloc
[call site]
01113
string_dup
[function]
[call site]
01114
sam_hrecs_find_type_id
[function]
[call site]
01115
sam_hrecs_find_key
[function]
[call site]
01116
string_dup
[function]
[call site]
01117
sam_hrecs_find_key
[function]
[call site]
01118
strtoll
[call site]
01119
kh_put_refs
[function]
[call site]
01120
kh_resize_refs
[function]
[call site]
01121
realloc
[call site]
01122
cram_set_option
[function]
[call site]
01123
cram_set_voption
[function]
[call site]
01124
__errno_location
[call site]
01125
strdup
[call site]
01126
refs_free
[function]
[call site]
01127
cram_seek_to_refpos
[function]
[call site]
01128
cram_index_query
[function]
[call site]
01129
cram_seek
[function]
[call site]
01130
cram_drain_rqueue
[function]
[call site]
01131
hts_tpool_process_empty
[function]
[call site]
01132
pthread_mutex_lock
[call site]
01133
pthread_mutex_unlock
[call site]
01134
hts_tpool_next_result_wait
[function]
[call site]
01135
pthread_mutex_lock
[call site]
01136
hts_tpool_next_result_locked
[function]
[call site]
01137
pthread_cond_signal
[call site]
01138
wake_next_worker
[function]
[call site]
01139
gettimeofday
[call site]
01140
pthread_mutex_unlock
[call site]
01141
hts_tpool_process_destroy
[function]
[call site]
01142
pthread_cond_timedwait
[call site]
01143
pthread_mutex_unlock
[call site]
01144
hts_tpool_result_data
[function]
[call site]
01145
cram_free_container
[function]
[call site]
01146
cram_free_slice
[function]
[call site]
01147
hts_tpool_delete_result
[function]
[call site]
01148
cram_free_container
[function]
[call site]
01149
cram_free_slice
[function]
[call site]
01150
cram_free_container
[function]
[call site]
01151
hseek
[function]
[call site]
01152
pthread_mutex_lock
[call site]
01153
pthread_mutex_unlock
[call site]
01154
cram_free_container
[function]
[call site]
01155
cram_free_container
[function]
[call site]
01156
pthread_mutex_lock
[call site]
01157
pthread_mutex_unlock
[call site]
01158
pthread_mutex_lock
[call site]
01159
pthread_mutex_unlock
[call site]
01160
pthread_mutex_lock
[call site]
01161
pthread_mutex_unlock
[call site]
01162
cram_load_reference
[function]
[call site]
01163
refs_load_fai
[function]
[call site]
01164
strlen
[call site]
01165
refs_create
[function]
[call site]
01166
bgzf_close
[function]
[call site]
01167
strstr
[call site]
01168
string_ndup
[function]
[call site]
01169
snprintf
[call site]
01170
strcmp
[call site]
01171
string_ndup
[function]
[call site]
01172
snprintf
[call site]
01173
string_dup
[function]
[call site]
01174
snprintf
[call site]
01175
bgzf_open_ref
[function]
[call site]
01176
strncmp
[call site]
01177
hisremote
[function]
[call site]
01178
find_scheme_handler
[function]
[call site]
01179
snprintf
[call site]
01180
access
[call site]
01181
fai_build
[function]
[call site]
01182
fai_build3
[function]
[call site]
01183
fai_build3_core
[function]
[call site]
01184
bgzf_open
[function]
[call site]
01185
strchr
[call site]
01186
hopen
[function]
[call site]
01187
bgzf_read_init
[function]
[call site]
01188
hclose_abruptly
[function]
[call site]
01189
strchr
[call site]
01190
hopen
[function]
[call site]
01191
bgzf_write_init
[function]
[call site]
01192
__errno_location
[call site]
01193
ed_is_big
[function]
[call site]
01194
__errno_location
[call site]
01195
strerror
[call site]
01196
hts_log
[function]
[call site]
01197
bgzf_index_build_init
[function]
[call site]
01198
bgzf_index_destroy
[function]
[call site]
01199
calloc
[call site]
01200
hts_log
[function]
[call site]
01201
fai_build_core
[function]
[call site]
01202
calloc
[call site]
01203
kh_init_s
[function]
[call site]
01204
calloc
[call site]
01205
bgzf_getc_
[function]
[call site]
01206
bgzf_getc
[function]
[call site]
01207
bgzf_read_block
[function]
[call site]
01208
hts_tpool_next_result_wait
[function]
[call site]
01209
hts_tpool_result_data
[function]
[call site]
01210
mt_destroy
[function]
[call site]
01211
hts_tpool_delete_result
[function]
[call site]
01212
hts_log
[function]
[call site]
01213
hts_tpool_delete_result
[function]
[call site]
01214
hts_log
[function]
[call site]
01215
hts_tpool_delete_result
[function]
[call site]
01216
bgzf_index_add_block
[function]
[call site]
01217
pthread_mutex_lock
[call site]
01218
pool_free
[function]
[call site]
01219
pthread_mutex_unlock
[call site]
01220
hts_tpool_delete_result
[function]
[call site]
01221
bgzf_htell
[function]
[call site]
01222
pthread_mutex_lock
[call site]
01223
pthread_mutex_unlock
[call site]
01224
htell
[function]
[call site]
01225
hread
[function]
[call site]
01226
__errno_location
[call site]
01227
strerror
[call site]
01228
hts_log
[function]
[call site]
01229
inflate_gzip_block
[function]
[call site]
01230
hread
[function]
[call site]
01231
inflate
[call site]
01232
bgzf_zerr
[function]
[call site]
01233
hts_log
[function]
[call site]
01234
hpeek
[function]
[call site]
01235
inflateReset
[call site]
01236
bgzf_zerr
[function]
[call site]
01237
hts_log
[function]
[call site]
01238
hts_log
[function]
[call site]
01239
hts_log
[function]
[call site]
01240
load_block_from_cache
[function]
[call site]
01241
kh_get_cache
[function]
[call site]
01242
hseek
[function]
[call site]
01243
hts_log
[function]
[call site]
01244
exit
[call site]
01245
hread
[function]
[call site]
01246
hts_log
[function]
[call site]
01247
check_header
[function]
[call site]
01248
unpackInt16
[function]
[call site]
01249
unpackInt16
[function]
[call site]
01250
hts_log
[function]
[call site]
01251
hread
[function]
[call site]
01252
calloc
[call site]
01253
inflateInit2_
[call site]
01254
bgzf_zerr
[function]
[call site]
01255
hts_log
[function]
[call site]
01256
inflate_gzip_block
[function]
[call site]
01257
hts_log
[function]
[call site]
01258
unpackInt16
[function]
[call site]
01259
hts_log
[function]
[call site]
01260
hread
[function]
[call site]
01261
hts_log
[function]
[call site]
01262
inflate_block
[function]
[call site]
01263
le_to_u32
[function]
[call site]
01264
bgzf_uncompress
[function]
[call site]
01265
inflateInit2_
[call site]
01266
bgzf_zerr
[function]
[call site]
01267
hts_log
[function]
[call site]
01268
inflate
[call site]
01269
bgzf_zerr
[function]
[call site]
01270
hts_log
[function]
[call site]
01271
inflateEnd
[call site]
01272
bgzf_zerr
[function]
[call site]
01273
hts_log
[function]
[call site]
01274
inflateEnd
[call site]
01275
bgzf_zerr
[function]
[call site]
01276
hts_log
[function]
[call site]
01277
crc32
[call site]
01278
hts_log
[function]
[call site]
01279
bgzf_zerr
[function]
[call site]
01280
hts_log
[function]
[call site]
01281
bgzf_htell
[function]
[call site]
01282
bgzf_index_add_block
[function]
[call site]
01283
cache_block
[function]
[call site]
01284
kh_del_cache
[function]
[call site]
01285
kh_put_cache
[function]
[call site]
01286
kh_resize_cache
[function]
[call site]
01287
realloc
[call site]
01288
bgzf_htell
[function]
[call site]
01289
hts_log
[function]
[call site]
01290
hts_log
[function]
[call site]
01291
bgzf_getc_
[function]
[call site]
01292
hts_log
[function]
[call site]
01293
__ctype_b_loc
[call site]
01294
hts_log
[function]
[call site]
01295
fai_insert_index
[function]
[call site]
01296
hts_log
[function]
[call site]
01297
strdup
[call site]
01298
kh_put_s
[function]
[call site]
01299
kh_resize_s
[function]
[call site]
01300
realloc
[call site]
01301
__ac_FNV1a_hash_string
[function]
[call site]
01302
strcmp
[call site]
01303
realloc
[call site]
01304
hts_log
[function]
[call site]
01305
__ctype_b_loc
[call site]
01306
kputc
[function]
[call site]
01307
bgzf_getc_
[function]
[call site]
01308
kputsn
[function]
[call site]
01309
hts_log
[function]
[call site]
01310
bgzf_getc_
[function]
[call site]
01311
bgzf_utell
[function]
[call site]
01312
bgzf_getc_
[function]
[call site]
01313
bgzf_utell
[function]
[call site]
01314
hts_log
[function]
[call site]
01315
isgraph_
[function]
[call site]
01316
bgzf_getc_
[function]
[call site]
01317
hts_log
[function]
[call site]
01318
bgzf_getc_
[function]
[call site]
01319
bgzf_utell
[function]
[call site]
01320
hts_log
[function]
[call site]
01321
hts_log
[function]
[call site]
01322
isgraph_
[function]
[call site]
01323
bgzf_getc_
[function]
[call site]
01324
hts_log
[function]
[call site]
01325
hts_log
[function]
[call site]
01326
hts_log
[function]
[call site]
01327
fai_insert_index
[function]
[call site]
01328
hts_log
[function]
[call site]
01329
fai_destroy
[function]
[call site]
01330
kh_destroy_s
[function]
[call site]
01331
bgzf_close
[function]
[call site]
01332
hts_log
[function]
[call site]
01333
ksprintf
[function]
[call site]
01334
ksprintf
[function]
[call site]
01335
bgzf_index_dump
[function]
[call site]
01336
hts_log
[function]
[call site]
01337
__errno_location
[call site]
01338
get_name_suffix
[function]
[call site]
01339
strlen
[call site]
01340
snprintf
[call site]
01341
hopen
[function]
[call site]
01342
bgzf_index_dump_hfile
[function]
[call site]
01343
hts_log
[function]
[call site]
01344
__errno_location
[call site]
01345
bgzf_flush
[function]
[call site]
01346
hwrite_uint64
[function]
[call site]
01347
ed_is_big
[function]
[call site]
01348
ed_swap_8
[function]
[call site]
01349
hwrite
[function]
[call site]
01350
hwrite_uint64
[function]
[call site]
01351
hwrite_uint64
[function]
[call site]
01352
__errno_location
[call site]
01353
strerror
[call site]
01354
hts_log
[function]
[call site]
01355
hclose
[function]
[call site]
01356
__errno_location
[call site]
01357
strerror
[call site]
01358
hts_log
[function]
[call site]
01359
hclose_abruptly
[function]
[call site]
01360
hts_log
[function]
[call site]
01361
bgzf_close
[function]
[call site]
01362
__errno_location
[call site]
01363
strerror
[call site]
01364
hts_log
[function]
[call site]
01365
hopen
[function]
[call site]
01366
__errno_location
[call site]
01367
strerror
[call site]
01368
hts_log
[function]
[call site]
01369
fai_save
[function]
[call site]
01370
kh_get_s
[function]
[call site]
01371
__assert_fail
[call site]
01372
snprintf
[call site]
01373
snprintf
[call site]
01374
hputs
[function]
[call site]
01375
strlen
[call site]
01376
hputs2
[function]
[call site]
01377
hwrite2
[function]
[call site]
01378
hputs
[function]
[call site]
01379
__errno_location
[call site]
01380
strerror
[call site]
01381
hts_log
[function]
[call site]
01382
hclose
[function]
[call site]
01383
__errno_location
[call site]
01384
strerror
[call site]
01385
hts_log
[function]
[call site]
01386
fai_destroy
[function]
[call site]
01387
__errno_location
[call site]
01388
bgzf_close
[function]
[call site]
01389
fai_destroy
[function]
[call site]
01390
__errno_location
[call site]
01391
bgzf_open
[function]
[call site]
01392
perror
[call site]
01393
bgzf_index_load
[function]
[call site]
01394
get_name_suffix
[function]
[call site]
01395
hopen
[function]
[call site]
01396
bgzf_index_load_hfile
[function]
[call site]
01397
calloc
[call site]
01398
hread_uint64
[function]
[call site]
01399
hread
[function]
[call site]
01400
ed_is_big
[function]
[call site]
01401
ed_swap_8p
[function]
[call site]
01402
hread_uint64
[function]
[call site]
01403
hread_uint64
[function]
[call site]
01404
__errno_location
[call site]
01405
strerror
[call site]
01406
hts_log
[function]
[call site]
01407
hclose
[function]
[call site]
01408
__errno_location
[call site]
01409
strerror
[call site]
01410
hts_log
[function]
[call site]
01411
hclose_abruptly
[function]
[call site]
01412
hts_log
[function]
[call site]
01413
bgzf_close
[function]
[call site]
01414
hts_log
[function]
[call site]
01415
hopen
[function]
[call site]
01416
hts_log
[function]
[call site]
01417
perror
[call site]
01418
hgets
[function]
[call site]
01419
__errno_location
[call site]
01420
hgetln
[function]
[call site]
01421
hgetdelim
[function]
[call site]
01422
__errno_location
[call site]
01423
writebuffer_is_nonempty
[function]
[call site]
01424
__errno_location
[call site]
01425
memchr
[call site]
01426
refill_buffer
[function]
[call site]
01427
isspace_c
[function]
[call site]
01428
string_dup
[function]
[call site]
01429
isspace_c
[function]
[call site]
01430
strtoll
[call site]
01431
isspace_c
[function]
[call site]
01432
strtoll
[call site]
01433
isspace_c
[function]
[call site]
01434
strtol
[call site]
01435
isspace_c
[function]
[call site]
01436
strtol
[call site]
01437
kh_put_refs
[function]
[call site]
01438
realloc
[call site]
01439
hclose
[function]
[call site]
01440
hclose_abruptly
[function]
[call site]
01441
refs_free
[function]
[call site]
01442
sanitise_SQ_lines
[function]
[call site]
01443
kh_get_refs
[function]
[call site]
01444
strcmp
[call site]
01445
__assert_fail
[call site]
01446
hts_log
[function]
[call site]
01447
refs_free
[function]
[call site]
01448
refs_create
[function]
[call site]
01449
refs_from_header
[function]
[call site]
01450
refs2id
[function]
[call site]
01451
calloc
[call site]
01452
kh_get_refs
[function]
[call site]
01453
hts_log
[function]
[call site]
01454
__isoc99_sscanf
[call site]
01455
hts_log
[function]
[call site]
01456
hts_log
[function]
[call site]
01457
__errno_location
[call site]
01458
hts_log
[function]
[call site]
01459
cram_init_tables
[function]
[call site]
01460
hts_tpool_init
[function]
[call site]
01461
pthread_mutexattr_init
[call site]
01462
pthread_mutexattr_settype
[call site]
01463
pthread_mutex_init
[call site]
01464
pthread_mutexattr_destroy
[call site]
01465
pthread_mutex_lock
[call site]
01466
pthread_attr_init
[call site]
01467
pthread_attr_getstacksize
[call site]
01468
pthread_attr_setstacksize
[call site]
01469
pthread_cond_init
[call site]
01470
pthread_create
[call site]
01471
tpool_worker
[function]
[call site]
01472
pthread_mutex_lock
[call site]
01473
__assert_fail
[call site]
01474
pthread_cond_wait
[call site]
01475
__assert_fail
[call site]
01476
pthread_cond_broadcast
[call site]
01477
pthread_cond_signal
[call site]
01478
pthread_mutex_unlock
[call site]
01479
hts_tpool_add_result
[function]
[call site]
01480
pthread_mutex_lock
[call site]
01481
pthread_cond_signal
[call site]
01482
pthread_mutex_unlock
[call site]
01483
pthread_mutex_unlock
[call site]
01484
hts_tpool_process_shutdown
[function]
[call site]
01485
pthread_mutex_lock
[call site]
01486
hts_tpool_process_shutdown_locked
[function]
[call site]
01487
pthread_mutex_unlock
[call site]
01488
__assert_fail
[call site]
01489
pthread_cond_broadcast
[call site]
01490
pthread_mutex_unlock
[call site]
01491
pthread_mutex_lock
[call site]
01492
hts_tpool_process_destroy
[function]
[call site]
01493
pthread_mutex_unlock
[call site]
01494
pthread_mutex_lock
[call site]
01495
hts_tpool_process_shutdown_locked
[function]
[call site]
01496
pthread_mutex_unlock
[call site]
01497
pthread_mutex_unlock
[call site]
01498
pthread_attr_destroy
[call site]
01499
__errno_location
[call site]
01500
__errno_location
[call site]
01501
strerror
[call site]
01502
hts_log
[function]
[call site]
01503
pthread_mutex_unlock
[call site]
01504
pthread_join
[call site]
01505
pthread_cond_destroy
[call site]
01506
pthread_mutex_destroy
[call site]
01507
pthread_attr_destroy
[call site]
01508
__errno_location
[call site]
01509
hts_tpool_process_init
[function]
[call site]
01510
pthread_cond_init
[call site]
01511
pthread_cond_init
[call site]
01512
pthread_cond_init
[call site]
01513
pthread_cond_init
[call site]
01514
hts_tpool_process_attach
[function]
[call site]
01515
pthread_mutex_lock
[call site]
01516
__assert_fail
[call site]
01517
pthread_mutex_unlock
[call site]
01518
hts_tpool_size
[function]
[call site]
01519
hts_tpool_process_init
[function]
[call site]
01520
hts_log
[function]
[call site]
01521
__errno_location
[call site]
01522
bgzf_hopen
[function]
[call site]
01523
__errno_location
[call site]
01524
hts_process_opts
[function]
[call site]
01525
hts_parse_opt_list
[function]
[call site]
01526
strncpy
[call site]
01527
hts_opt_add
[function]
[call site]
01528
strdup
[call site]
01529
strchr
[call site]
01530
strcmp
[call site]
01531
strcmp
[call site]
01532
atoi
[call site]
01533
strcmp
[call site]
01534
strcmp
[call site]
01535
atoi
[call site]
01536
strcmp
[call site]
01537
strcmp
[call site]
01538
atoi
[call site]
01539
strcmp
[call site]
01540
strcmp
[call site]
01541
atoi
[call site]
01542
strcmp
[call site]
01543
strcmp
[call site]
01544
atoi
[call site]
01545
strcmp
[call site]
01546
strcmp
[call site]
01547
atoi
[call site]
01548
strcmp
[call site]
01549
strcmp
[call site]
01550
atoi
[call site]
01551
strcmp
[call site]
01552
strcmp
[call site]
01553
atoi
[call site]
01554
strcmp
[call site]
01555
strcmp
[call site]
01556
atoi
[call site]
01557
strcmp
[call site]
01558
strcmp
[call site]
01559
atoi
[call site]
01560
strcmp
[call site]
01561
strcmp
[call site]
01562
atoi
[call site]
01563
strcmp
[call site]
01564
strcmp
[call site]
01565
atoi
[call site]
01566
strcmp
[call site]
01567
strcmp
[call site]
01568
atoi
[call site]
01569
strcmp
[call site]
01570
strcmp
[call site]
01571
atoi
[call site]
01572
strcmp
[call site]
01573
strcmp
[call site]
01574
atoi
[call site]
01575
strcmp
[call site]
01576
strcmp
[call site]
01577
strcmp
[call site]
01578
strcmp
[call site]
01579
strcmp
[call site]
01580
strcmp
[call site]
01581
strcmp
[call site]
01582
strcmp
[call site]
01583
strcmp
[call site]
01584
strcmp
[call site]
01585
strcmp
[call site]
01586
strcmp
[call site]
01587
strcmp
[call site]
01588
strcmp
[call site]
01589
atoi
[call site]
01590
strcmp
[call site]
01591
strcmp
[call site]
01592
atoi
[call site]
01593
strcmp
[call site]
01594
strcmp
[call site]
01595
strtol
[call site]
01596
hts_log
[function]
[call site]
01597
strcmp
[call site]
01598
strcmp
[call site]
01599
strtol
[call site]
01600
strcmp
[call site]
01601
strcmp
[call site]
01602
strtol
[call site]
01603
strcmp
[call site]
01604
strcmp
[call site]
01605
strcmp
[call site]
01606
strcmp
[call site]
01607
atoi
[call site]
01608
strcmp
[call site]
01609
strcmp
[call site]
01610
atoi
[call site]
01611
strcmp
[call site]
01612
strcmp
[call site]
01613
strtol
[call site]
01614
strcmp
[call site]
01615
strcmp
[call site]
01616
strtol
[call site]
01617
strcmp
[call site]
01618
strcmp
[call site]
01619
strcmp
[call site]
01620
strcmp
[call site]
01621
strcmp
[call site]
01622
strcmp
[call site]
01623
strcmp
[call site]
01624
strcmp
[call site]
01625
strcmp
[call site]
01626
strcmp
[call site]
01627
strcmp
[call site]
01628
strcmp
[call site]
01629
hts_log
[function]
[call site]
01630
hts_opt_apply
[function]
[call site]
01631
strdup
[call site]
01632
hts_set_opt
[function]
[call site]
01633
hts_set_threads
[function]
[call site]
01634
sam_set_threads
[function]
[call site]
01635
hts_tpool_init
[function]
[call site]
01636
sam_set_thread_pool
[function]
[call site]
01637
sam_state_create
[function]
[call site]
01638
calloc
[call site]
01639
pthread_mutex_init
[call site]
01640
pthread_mutex_init
[call site]
01641
pthread_cond_init
[call site]
01642
hts_tpool_size
[function]
[call site]
01643
hts_tpool_process_init
[function]
[call site]
01644
sam_state_destroy
[function]
[call site]
01645
pthread_mutex_lock
[call site]
01646
pthread_cond_signal
[call site]
01647
hts_tpool_wake_dispatch
[function]
[call site]
01648
hts_tpool_wake_dispatch
[function]
[call site]
01649
pthread_mutex_unlock
[call site]
01650
hts_usleep
[function]
[call site]
01651
pthread_mutex_lock
[call site]
01652
pthread_mutex_unlock
[call site]
01653
hts_tpool_dispatch
[function]
[call site]
01654
hts_tpool_dispatch3
[function]
[call site]
01655
sam_format_worker
[function]
[call site]
01656
pthread_mutex_lock
[call site]
01657
pthread_mutex_unlock
[call site]
01658
calloc
[call site]
01659
sam_state_err
[function]
[call site]
01660
pthread_mutex_lock
[call site]
01661
pthread_mutex_unlock
[call site]
01662
sam_format1_append
[function]
[call site]
01663
kputsn_
[function]
[call site]
01664
__errno_location
[call site]
01665
ks_resize
[function]
[call site]
01666
kputc_
[function]
[call site]
01667
ks_resize
[function]
[call site]
01668
kputw
[function]
[call site]
01669
ks_resize
[function]
[call site]
01670
kputuw
[function]
[call site]
01671
ks_resize
[function]
[call site]
01672
ks_resize
[function]
[call site]
01673
kputc_
[function]
[call site]
01674
kputs
[function]
[call site]
01675
kputc_
[function]
[call site]
01676
kputsn_
[function]
[call site]
01677
kputll
[function]
[call site]
01678
ks_resize
[function]
[call site]
01679
kputuw
[function]
[call site]
01680
kputc_
[function]
[call site]
01681
kputw
[function]
[call site]
01682
kputc_
[function]
[call site]
01683
kputw
[function]
[call site]
01684
kputc_
[function]
[call site]
01685
kputc_
[function]
[call site]
01686
kputc_
[function]
[call site]
01687
kputsn_
[function]
[call site]
01688
kputsn_
[function]
[call site]
01689
kputs
[function]
[call site]
01690
kputc_
[function]
[call site]
01691
kputll
[function]
[call site]
01692
kputc_
[function]
[call site]
01693
kputll
[function]
[call site]
01694
kputc_
[function]
[call site]
01695
ks_resize
[function]
[call site]
01696
nibble2base
[function]
[call site]
01697
add33
[function]
[call site]
01698
kputsn_
[function]
[call site]
01699
kputc_
[function]
[call site]
01700
sam_format_aux1
[function]
[call site]
01701
kputsn_
[function]
[call site]
01702
kputc_
[function]
[call site]
01703
kputsn_
[function]
[call site]
01704
kputw
[function]
[call site]
01705
kputsn_
[function]
[call site]
01706
kputw
[function]
[call site]
01707
kputsn_
[function]
[call site]
01708
le_to_u16
[function]
[call site]
01709
kputuw
[function]
[call site]
01710
kputsn_
[function]
[call site]
01711
le_to_i16
[function]
[call site]
01712
le_to_u16
[function]
[call site]
01713
kputw
[function]
[call site]
01714
kputsn_
[function]
[call site]
01715
le_to_u32
[function]
[call site]
01716
kputuw
[function]
[call site]
01717
kputsn_
[function]
[call site]
01718
le_to_i32
[function]
[call site]
01719
le_to_u32
[function]
[call site]
01720
kputw
[function]
[call site]
01721
kputsn_
[function]
[call site]
01722
kputc_
[function]
[call site]
01723
le_to_float
[function]
[call site]
01724
le_to_u32
[function]
[call site]
01725
ksprintf
[function]
[call site]
01726
le_to_double
[function]
[call site]
01727
le_to_u64
[function]
[call site]
01728
ksprintf
[function]
[call site]
01729
kputc_
[function]
[call site]
01730
kputc_
[function]
[call site]
01731
kputc_
[function]
[call site]
01732
kputsn
[function]
[call site]
01733
le_to_u32
[function]
[call site]
01734
kputsn_
[function]
[call site]
01735
kputc
[function]
[call site]
01736
ks_expand
[function]
[call site]
01737
__errno_location
[call site]
01738
ks_resize
[function]
[call site]
01739
kputw
[function]
[call site]
01740
ks_expand
[function]
[call site]
01741
kputuw
[function]
[call site]
01742
ks_expand
[function]
[call site]
01743
le_to_i16
[function]
[call site]
01744
kputw
[function]
[call site]
01745
ks_expand
[function]
[call site]
01746
le_to_u16
[function]
[call site]
01747
kputuw
[function]
[call site]
01748
ks_expand
[function]
[call site]
01749
le_to_i32
[function]
[call site]
01750
kputw
[function]
[call site]
01751
ks_expand
[function]
[call site]
01752
le_to_u32
[function]
[call site]
01753
kputuw
[function]
[call site]
01754
ks_expand
[function]
[call site]
01755
le_to_float
[function]
[call site]
01756
kputd
[function]
[call site]
01757
__errno_location
[call site]
01758
hts_log
[function]
[call site]
01759
__errno_location
[call site]
01760
kputsn
[function]
[call site]
01761
hts_log
[function]
[call site]
01762
__errno_location
[call site]
01763
hts_log
[function]
[call site]
01764
__errno_location
[call site]
01765
__errno_location
[call site]
01766
sam_state_err
[function]
[call site]
01767
kputc
[function]
[call site]
01768
pthread_mutex_lock
[call site]
01769
pthread_mutex_unlock
[call site]
01770
hts_tpool_process_flush
[function]
[call site]
01771
pthread_mutex_lock
[call site]
01772
pthread_mutex_unlock
[call site]
01773
hts_tpool_process_empty
[function]
[call site]
01774
hts_usleep
[function]
[call site]
01775
pthread_mutex_lock
[call site]
01776
hts_tpool_process_is_shutdown
[function]
[call site]
01777
pthread_mutex_unlock
[call site]
01778
hts_tpool_process_shutdown
[function]
[call site]
01779
pthread_join
[call site]
01780
hts_tpool_process_destroy
[function]
[call site]
01781
hts_tpool_destroy
[function]
[call site]
01782
pthread_mutex_destroy
[call site]
01783
pthread_mutex_destroy
[call site]
01784
pthread_cond_destroy
[call site]
01785
sam_free_sp_bams
[function]
[call site]
01786
sam_free_sp_bams
[function]
[call site]
01787
bam_hdr_destroy
[function]
[call site]
01788
sam_hdr_destroy
[function]
[call site]
01789
bgzf_thread_pool
[function]
[call site]
01790
calloc
[call site]
01791
hts_tpool_size
[function]
[call site]
01792
hts_tpool_process_init
[function]
[call site]
01793
hts_tpool_process_ref_incr
[function]
[call site]
01794
pthread_mutex_lock
[call site]
01795
pthread_mutex_unlock
[call site]
01796
pool_create
[function]
[call site]
01797
pthread_mutex_init
[call site]
01798
pthread_mutex_init
[call site]
01799
pthread_mutex_init
[call site]
01800
pthread_cond_init
[call site]
01801
pthread_create
[call site]
01802
hts_get_bgzfp
[function]
[call site]
01803
bgzf_mt
[function]
[call site]
01804
hts_tpool_init
[function]
[call site]
01805
bgzf_thread_pool
[function]
[call site]
01806
hts_tpool_destroy
[function]
[call site]
01807
hts_set_opt
[function]
[call site]
01808
hts_hfile
[function]
[call site]
01809
bgzf_hfile
[function]
[call site]
01810
cram_hfile
[function]
[call site]
01811
bgzf_hfile
[function]
[call site]
01812
hfile_set_blksize
[function]
[call site]
01813
hts_log
[function]
[call site]
01814
hts_log
[function]
[call site]
01815
hts_set_thread_pool
[function]
[call site]
01816
sam_set_thread_pool
[function]
[call site]
01817
hts_get_bgzfp
[function]
[call site]
01818
bgzf_thread_pool
[function]
[call site]
01819
hts_set_opt
[function]
[call site]
01820
hts_set_cache_size
[function]
[call site]
01821
hts_get_bgzfp
[function]
[call site]
01822
bgzf_set_cache_size
[function]
[call site]
01823
fastq_state_set
[function]
[call site]
01824
fastq_state_init
[function]
[call site]
01825
calloc
[call site]
01826
strcpy
[call site]
01827
strcmp
[call site]
01828
kh_init_tag
[function]
[call site]
01829
calloc
[call site]
01830
strlen
[call site]
01831
hts_log
[function]
[call site]
01832
kh_put_tag
[function]
[call site]
01833
kh_resize_tag
[function]
[call site]
01834
realloc
[call site]
01835
strncpy
[call site]
01836
fastq_state_set
[function]
[call site]
01837
fastq_state_set
[function]
[call site]
01838
cram_set_option
[function]
[call site]
01839
hts_set_filter_expression
[function]
[call site]
01840
hts_filter_free
[function]
[call site]
01841
regfree
[call site]
01842
hts_filter_init
[function]
[call site]
01843
cram_set_voption
[function]
[call site]
01847
hts_set_opt
[function]
[call site]
01848
hts_opt_free
[function]
[call site]
01849
hts_opt_free
[function]
[call site]
01850
hclose_abruptly
[function]
[call site]
01851
hts_log
[function]
[call site]
01852
hclose_abruptly
[function]
[call site]
01853
hclose
[function]
[call site]
01854
abort
[call site]
01855
hts_close
[function]
[call site]
01856
bgzf_close
[function]
[call site]
01857
cram_eof
[function]
[call site]
01858
hts_log
[function]
[call site]
01859
cram_close
[function]
[call site]
01860
cram_update_curr_slice
[function]
[call site]
01861
cram_flush_container_mt
[function]
[call site]
01862
pthread_mutex_lock
[call site]
01863
reset_metrics
[function]
[call site]
01864
pthread_mutex_unlock
[call site]
01865
hts_tpool_process_flush
[function]
[call site]
01866
pthread_mutex_lock
[call site]
01867
pthread_mutex_unlock
[call site]
01868
cram_flush_container
[function]
[call site]
01869
cram_encode_container
[function]
[call site]
01870
pthread_mutex_lock
[call site]
01871
hts_log
[function]
[call site]
01872
hts_log
[function]
[call site]
01873
pthread_mutex_unlock
[call site]
01874
pthread_mutex_lock
[call site]
01875
pthread_mutex_unlock
[call site]
01876
cram_get_ref
[function]
[call site]
01877
pthread_mutex_lock
[call site]
01878
hts_log
[function]
[call site]
01879
pthread_mutex_unlock
[call site]
01880
hts_log
[function]
[call site]
01881
pthread_mutex_unlock
[call site]
01882
hts_log
[function]
[call site]
01883
pthread_mutex_unlock
[call site]
01884
pthread_mutex_lock
[call site]
01885
hts_log
[function]
[call site]
01886
cram_populate_ref
[function]
[call site]
01887
getenv
[call site]
01888
getenv
[call site]
01889
hts_log
[function]
[call site]
01890
sam_hrecs_find_type_id
[function]
[call site]
01891
sam_hrecs_find_key
[function]
[call site]
01892
hts_log
[function]
[call site]
01893
expand_cache_path
[function]
[call site]
01894
strchr
[call site]
01895
strncpy
[call site]
01896
strlen
[call site]
01897
strcpy
[call site]
01898
strtol
[call site]
01899
strlen
[call site]
01900
strncpy
[call site]
01901
strlen
[call site]
01902
strcpy
[call site]
01903
strlen
[call site]
01904
strcpy
[call site]
01905
stat
[call site]
01906
stat
[call site]
01907
bgzf_open
[function]
[call site]
01908
string_dup
[function]
[call site]
01909
bgzf_close
[function]
[call site]
01910
open_path_mfile
[function]
[call site]
01911
getenv
[call site]
01912
tokenise_search_path
[function]
[call site]
01913
strlen
[call site]
01914
strncmp
[call site]
01915
strncmp
[call site]
01916
strncmp
[call site]
01917
strncmp
[call site]
01918
strncmp
[call site]
01919
strncmp
[call site]
01920
strncmp
[call site]
01921
strncmp
[call site]
01922
strncmp
[call site]
01923
strncmp
[call site]
01924
find_file_url
[function]
[call site]
01925
expand_path
[function]
[call site]
01926
strlen
[call site]
01927
strlen
[call site]
01928
hts_log
[function]
[call site]
01929
strchr
[call site]
01930
strtol
[call site]
01931
hopen
[function]
[call site]
01932
__errno_location
[call site]
01933
__errno_location
[call site]
01934
strerror
[call site]
01935
hts_log
[function]
[call site]
01936
mfcreate
[function]
[call site]
01937
hread
[function]
[call site]
01938
mfwrite
[function]
[call site]
01939
realloc
[call site]
01940
hclose_abruptly
[function]
[call site]
01941
hclose
[function]
[call site]
01942
__errno_location
[call site]
01943
strerror
[call site]
01944
hts_log
[function]
[call site]
01945
mrewind
[function]
[call site]
01946
mfdestroy
[function]
[call site]
01947
strncmp
[call site]
01948
hisremote
[function]
[call site]
01949
find_file_url
[function]
[call site]
01950
find_file_dir
[function]
[call site]
01951
expand_path
[function]
[call site]
01952
is_file
[function]
[call site]
01953
stat
[call site]
01954
mfopen
[function]
[call site]
01955
fopen
[call site]
01956
mfreopen
[function]
[call site]
01957
strchr
[call site]
01958
strchr
[call site]
01959
strchr
[call site]
01960
strchr
[call site]
01961
strchr
[call site]
01962
strchr
[call site]
01963
strchr
[call site]
01964
mfcreate
[function]
[call site]
01965
mfmmap
[function]
[call site]
01966
mfload
[function]
[call site]
01970
stat
[call site]
01971
realloc
[call site]
01972
fread
[call site]
01973
feof
[call site]
01974
fseek
[call site]
01975
mfcreate
[function]
[call site]
01976
hts_log
[function]
[call site]
01977
fseek
[call site]
01978
strlen
[call site]
01979
strcpy
[call site]
01980
strrchr
[call site]
01981
find_file_dir
[function]
[call site]
01982
mfsteal
[function]
[call site]
01983
mfdetach
[function]
[call site]
01984
mfflush
[function]
[call site]
01985
fclose
[call site]
01986
mfdestroy
[function]
[call site]
01987
sam_hrecs_find_key
[function]
[call site]
01988
strstr
[call site]
01989
strncmp
[call site]
01990
hts_log
[function]
[call site]
01991
strncmp
[call site]
01992
bgzf_close
[function]
[call site]
01993
refs_load_fai
[function]
[call site]
01994
sanitise_SQ_lines
[function]
[call site]
01995
bgzf_close
[function]
[call site]
01996
refs2id
[function]
[call site]
01997
expand_cache_path
[function]
[call site]
01998
hts_log
[function]
[call site]
01999
mkdir_prefix
[function]
[call site]
02000
strrchr
[call site]
02001
is_directory
[function]
[call site]
02002
stat
[call site]
02003
mkdir
[call site]
02004
chmod
[call site]
02005
mkdir_prefix
[function]
[call site]
02006
mkdir
[call site]
02007
chmod
[call site]
02008
hts_open_tmpfile
[function]
[call site]
02009
getpid
[call site]
02010
time
[call site]
02011
clock
[call site]
02012
ks_clear
[function]
[call site]
02013
ksprintf
[function]
[call site]
02014
hopen
[function]
[call site]
02015
__errno_location
[call site]
02016
perror
[call site]
02017
hts_md5_init
[function]
[call site]
02018
hts_md5_reset
[function]
[call site]
02019
hclose_abruptly
[function]
[call site]
02020
unlink
[call site]
02021
hts_md5_update
[function]
[call site]
02022
body
[function]
[call site]
02023
body
[function]
[call site]
02024
hts_md5_final
[function]
[call site]
02025
body
[function]
[call site]
02026
body
[function]
[call site]
02027
hts_md5_destroy
[function]
[call site]
02028
hts_md5_hex
[function]
[call site]
02029
strncmp
[call site]
02030
hts_log
[function]
[call site]
02031
hclose_abruptly
[function]
[call site]
02032
unlink
[call site]
02033
hwrite
[function]
[call site]
02034
hclose
[function]
[call site]
02035
chmod
[call site]
02036
rename
[call site]
02037
__errno_location
[call site]
02038
strerror
[call site]
02039
hts_log
[function]
[call site]
02040
unlink
[call site]
02041
hts_log
[function]
[call site]
02042
hts_log
[function]
[call site]
02043
pthread_mutex_unlock
[call site]
02044
pthread_mutex_unlock
[call site]
02045
cram_ref_incr_locked
[function]
[call site]
02046
cram_ref_incr_locked
[function]
[call site]
02047
cram_ref_load
[function]
[call site]
02048
__assert_fail
[call site]
02049
__assert_fail
[call site]
02050
ref_entry_free_seq
[function]
[call site]
02051
strcmp
[call site]
02052
bgzf_close
[function]
[call site]
02053
bgzf_open_ref
[function]
[call site]
02054
load_ref_portion
[function]
[call site]
02055
bgzf_useek
[function]
[call site]
02056
hseek
[function]
[call site]
02057
bgzf_read_block
[function]
[call site]
02058
bgzf_seek_common
[function]
[call site]
02059
pthread_mutex_lock
[call site]
02060
pthread_cond_signal
[call site]
02061
hts_tpool_wake_dispatch
[function]
[call site]
02062
pthread_cond_wait
[call site]
02063
pthread_cond_signal
[call site]
02064
abort
[call site]
02065
__errno_location
[call site]
02066
pthread_mutex_unlock
[call site]
02067
pthread_mutex_unlock
[call site]
02068
hseek
[function]
[call site]
02069
bgzf_read_block
[function]
[call site]
02070
__assert_fail
[call site]
02071
perror
[call site]
02072
bgzf_read
[function]
[call site]
02073
__assert_fail
[call site]
02074
bgzf_read_block
[function]
[call site]
02075
hts_log
[function]
[call site]
02076
bgzf_htell
[function]
[call site]
02077
hts_log
[function]
[call site]
02078
bgzf_htell
[function]
[call site]
02079
perror
[call site]
02080
isspace_c
[function]
[call site]
02081
isspace_c
[function]
[call site]
02082
isspace_c
[function]
[call site]
02083
hts_log
[function]
[call site]
02084
toupper_c
[function]
[call site]
02085
toupper
[call site]
02086
pthread_mutex_unlock
[call site]
02087
pthread_mutex_unlock
[call site]
02088
cram_ref_incr_locked
[function]
[call site]
02089
pthread_mutex_unlock
[call site]
02090
pthread_mutex_unlock
[call site]
02091
pthread_mutex_unlock
[call site]
02092
pthread_mutex_unlock
[call site]
02093
strcmp
[call site]
02094
bgzf_close
[function]
[call site]
02095
bgzf_open_ref
[function]
[call site]
02096
pthread_mutex_unlock
[call site]
02097
pthread_mutex_unlock
[call site]
02098
load_ref_portion
[function]
[call site]
02099
pthread_mutex_unlock
[call site]
02100
pthread_mutex_unlock
[call site]
02101
pthread_mutex_unlock
[call site]
02102
pthread_mutex_unlock
[call site]
02103
hts_log
[function]
[call site]
02104
hts_log
[function]
[call site]
02105
pthread_mutex_lock
[call site]
02106
pthread_mutex_unlock
[call site]
02107
hts_log
[function]
[call site]
02108
hts_log
[function]
[call site]
02109
hts_log
[function]
[call site]
02110
hts_log
[function]
[call site]
02111
pthread_mutex_lock
[call site]
02112
pthread_mutex_unlock
[call site]
02113
validate_md5
[function]
[call site]
02114
sam_hrecs_find_type_id
[function]
[call site]
02115
sam_hrecs_find_key
[function]
[call site]
02116
hts_md5_init
[function]
[call site]
02117
hts_md5_update
[function]
[call site]
02118
hts_md5_final
[function]
[call site]
02119
hts_md5_destroy
[function]
[call site]
02120
hts_md5_hex
[function]
[call site]
02121
strcmp
[call site]
02122
hts_log
[function]
[call site]
02123
hts_log
[function]
[call site]
02124
cram_ref_incr
[function]
[call site]
02125
pthread_mutex_lock
[call site]
02126
cram_ref_incr_locked
[function]
[call site]
02127
pthread_mutex_unlock
[call site]
02128
cram_get_ref
[function]
[call site]
02129
validate_md5
[function]
[call site]
02130
hts_log
[function]
[call site]
02131
__assert_fail
[call site]
02132
lossy_read_names
[function]
[call site]
02133
kh_init_m_s2u64
[function]
[call site]
02134
calloc
[call site]
02135
expected_template_count
[function]
[call site]
02136
bam_aux_get
[function]
[call site]
02137
bam_aux_first
[function]
[call site]
02138
__errno_location
[call site]
02139
skip_aux
[function]
[call site]
02140
aux_type2size
[function]
[call site]
02141
memchr
[call site]
02142
aux_type2size
[function]
[call site]
02143
le_to_u32
[function]
[call site]
02144
bam_aux_next
[function]
[call site]
02145
skip_aux
[function]
[call site]
02146
__errno_location
[call site]
02147
hts_log
[function]
[call site]
02148
__errno_location
[call site]
02149
hts_log
[function]
[call site]
02150
__errno_location
[call site]
02151
bam_data_end
[function]
[call site]
02152
bam_aux2i_end
[function]
[call site]
02153
__errno_location
[call site]
02154
__errno_location
[call site]
02155
__errno_location
[call site]
02156
le_to_i16
[function]
[call site]
02157
le_to_u16
[function]
[call site]
02158
__errno_location
[call site]
02159
le_to_u16
[function]
[call site]
02160
__errno_location
[call site]
02161
le_to_i32
[function]
[call site]
02162
le_to_u32
[function]
[call site]
02163
__errno_location
[call site]
02164
le_to_u32
[function]
[call site]
02165
__errno_location
[call site]
02166
bam_aux_get
[function]
[call site]
02167
kh_put_m_s2u64
[function]
[call site]
02168
kh_resize_m_s2u64
[function]
[call site]
02169
realloc
[call site]
02170
__ac_FNV1a_hash_string
[function]
[call site]
02171
strcmp
[call site]
02172
kh_get_m_s2u64
[function]
[call site]
02173
kh_destroy_m_s2u64
[function]
[call site]
02174
cram_generate_reference
[function]
[call site]
02175
extend_ref
[function]
[call site]
02176
realloc
[call site]
02177
realloc
[call site]
02178
hts_log
[function]
[call site]
02179
cram_add_to_ref
[function]
[call site]
02180
bam_aux_get
[function]
[call site]
02181
cram_add_to_ref_MD
[function]
[call site]
02182
__ctype_b_loc
[call site]
02183
hts_str2uint
[function]
[call site]
02184
extend_ref
[function]
[call site]
02185
next_cigar_op
[function]
[call site]
02186
hts_log
[function]
[call site]
02187
__ctype_b_loc
[call site]
02188
extend_ref
[function]
[call site]
02189
next_cigar_op
[function]
[call site]
02190
hts_log
[function]
[call site]
02191
extend_ref
[function]
[call site]
02192
next_cigar_op
[function]
[call site]
02193
hts_log
[function]
[call site]
02194
extend_ref
[function]
[call site]
02195
hts_log
[function]
[call site]
02196
hts_log
[function]
[call site]
02197
pthread_mutex_lock
[call site]
02198
pthread_mutex_unlock
[call site]
02199
pthread_mutex_lock
[call site]
02200
pthread_mutex_unlock
[call site]
02201
cram_ref_decr
[function]
[call site]
02202
pthread_mutex_lock
[call site]
02203
cram_ref_decr_locked
[function]
[call site]
02204
__assert_fail
[call site]
02205
ref_entry_free_seq
[function]
[call site]
02206
pthread_mutex_unlock
[call site]
02207
cram_get_ref
[function]
[call site]
02208
hts_log
[function]
[call site]
02209
validate_md5
[function]
[call site]
02210
process_one_read
[function]
[call site]
02211
bam_aux_get
[function]
[call site]
02212
bam_aux_get
[function]
[call site]
02213
cram_stats_add
[function]
[call site]
02214
kh_init_m_i2i
[function]
[call site]
02215
calloc
[call site]
02216
kh_put_m_i2i
[function]
[call site]
02217
kh_resize_m_i2i
[function]
[call site]
02218
realloc
[call site]
02219
cram_stats_add
[function]
[call site]
02220
cram_stats_add
[function]
[call site]
02221
block_grow
[function]
[call site]
02222
block_resize
[function]
[call site]
02223
block_resize_exact
[function]
[call site]
02224
realloc
[call site]
02225
block_grow
[function]
[call site]
02226
nibble2base
[function]
[call site]
02227
hts_log
[function]
[call site]
02228
realloc
[call site]
02229
hts_log
[function]
[call site]
02230
kputuw
[function]
[call site]
02231
ks_resize
[function]
[call site]
02232
ks_resize
[function]
[call site]
02233
kputc
[function]
[call site]
02234
ks_resize
[function]
[call site]
02235
cram_add_substitution
[function]
[call site]
02236
cram_stats_add
[function]
[call site]
02237
cram_stats_add
[function]
[call site]
02238
cram_stats_add
[function]
[call site]
02239
block_append_char
[function]
[call site]
02240
block_grow
[function]
[call site]
02241
cram_add_feature
[function]
[call site]
02242
realloc
[call site]
02243
cram_stats_add
[function]
[call site]
02244
cram_stats_add
[function]
[call site]
02245
cram_stats_add
[function]
[call site]
02246
cram_add_bases
[function]
[call site]
02247
cram_add_feature
[function]
[call site]
02248
cram_add_base
[function]
[call site]
02249
cram_stats_add
[function]
[call site]
02250
cram_stats_add
[function]
[call site]
02251
block_append_char
[function]
[call site]
02252
cram_add_feature
[function]
[call site]
02253
cram_add_base
[function]
[call site]
02254
kputuw
[function]
[call site]
02255
kputc_
[function]
[call site]
02256
ks_resize
[function]
[call site]
02257
kputsn
[function]
[call site]
02258
ks_resize
[function]
[call site]
02259
cram_add_deletion
[function]
[call site]
02260
cram_stats_add
[function]
[call site]
02261
cram_add_feature
[function]
[call site]
02262
cram_add_skip
[function]
[call site]
02263
cram_stats_add
[function]
[call site]
02264
cram_add_feature
[function]
[call site]
02265
cram_add_insertion
[function]
[call site]
02266
cram_stats_add
[function]
[call site]
02267
block_append
[function]
[call site]
02268
block_grow
[function]
[call site]
02269
block_append_char
[function]
[call site]
02270
block_append_char
[function]
[call site]
02271
cram_add_feature
[function]
[call site]
02272
cram_add_quality
[function]
[call site]
02273
cram_stats_add
[function]
[call site]
02274
block_append_char
[function]
[call site]
02275
cram_add_feature
[function]
[call site]
02276
cram_add_softclip
[function]
[call site]
02277
block_append
[function]
[call site]
02278
block_append_char
[function]
[call site]
02279
block_append
[function]
[call site]
02280
block_append_char
[function]
[call site]
02281
block_append_char
[function]
[call site]
02282
cram_add_feature
[function]
[call site]
02283
cram_add_quality
[function]
[call site]
02284
cram_add_quality
[function]
[call site]
02285
cram_add_hardclip
[function]
[call site]
02286
cram_stats_add
[function]
[call site]
02287
cram_add_feature
[function]
[call site]
02288
cram_add_pad
[function]
[call site]
02289
cram_stats_add
[function]
[call site]
02290
cram_add_feature
[function]
[call site]
02291
hts_log
[function]
[call site]
02292
hts_log
[function]
[call site]
02293
cram_stats_add
[function]
[call site]
02294
kputuw
[function]
[call site]
02295
cram_stats_add
[function]
[call site]
02296
cram_encode_aux
[function]
[call site]
02297
bam_data_end
[function]
[call site]
02298
hts_log
[function]
[call site]
02299
sam_hrecs_find_rg
[function]
[call site]
02300
kh_get_m_s2i
[function]
[call site]
02301
block_append
[function]
[call site]
02302
hts_log
[function]
[call site]
02303
strncasecmp
[call site]
02304
hts_log
[function]
[call site]
02305
block_append
[function]
[call site]
02306
bam_aux2i_end
[function]
[call site]
02307
hts_log
[function]
[call site]
02308
block_append
[function]
[call site]
02309
block_append
[function]
[call site]
02310
kh_put_m_tagmap
[function]
[call site]
02311
kh_resize_m_tagmap
[function]
[call site]
02312
realloc
[call site]
02313
pthread_mutex_lock
[call site]
02314
kh_put_m_metrics
[function]
[call site]
02315
kh_resize_m_metrics
[function]
[call site]
02316
realloc
[call site]
02317
pthread_mutex_unlock
[call site]
02318
cram_new_metrics
[function]
[call site]
02319
kh_del_m_metrics
[function]
[call site]
02320
pthread_mutex_unlock
[call site]
02321
pthread_mutex_unlock
[call site]
02322
calloc
[call site]
02323
cram_encoder_init
[function]
[call site]
02324
cram_encoding2str
[function]
[call site]
02325
hts_log
[function]
[call site]
02326
cram_encoding2str
[function]
[call site]
02327
hts_log
[function]
[call site]
02328
abort
[call site]
02329
cram_stats_add
[function]
[call site]
02330
cram_stats_encoding
[function]
[call site]
02331
realloc
[call site]
02332
realloc
[call site]
02333
realloc
[call site]
02334
realloc
[call site]
02335
__assert_fail
[call site]
02336
cram_encoder_init
[function]
[call site]
02337
cram_stats_add
[function]
[call site]
02338
cram_stats_encoding
[function]
[call site]
02339
cram_encoder_init
[function]
[call site]
02340
cram_stats_add
[function]
[call site]
02341
cram_stats_encoding
[function]
[call site]
02342
cram_encoder_init
[function]
[call site]
02343
cram_encoder_init
[function]
[call site]
02344
hts_log
[function]
[call site]
02345
pthread_mutex_lock
[call site]
02346
pthread_mutex_unlock
[call site]
02347
cram_new_block
[function]
[call site]
02348
block_append_char
[function]
[call site]
02349
cram_new_block
[function]
[call site]
02350
block_append
[function]
[call site]
02351
cram_new_block
[function]
[call site]
02352
block_append
[function]
[call site]
02353
cram_new_block
[function]
[call site]
02354
block_append
[function]
[call site]
02355
cram_new_block
[function]
[call site]
02356
hts_log
[function]
[call site]
02357
cram_new_block
[function]
[call site]
02358
cram_new_block
[function]
[call site]
02359
hts_log
[function]
[call site]
02360
hts_log
[function]
[call site]
02361
block_append_char
[function]
[call site]
02362
string_ndup
[function]
[call site]
02363
kh_put_m_s2i
[function]
[call site]
02364
kh_resize_m_s2i
[function]
[call site]
02365
__ac_FNV1a_hash_string
[function]
[call site]
02366
cram_stats_add
[function]
[call site]
02367
sam_hrecs_find_rg
[function]
[call site]
02368
cram_stats_add
[function]
[call site]
02369
block_grow
[function]
[call site]
02370
block_grow
[function]
[call site]
02371
cram_stats_add
[function]
[call site]
02372
string_ndup
[function]
[call site]
02373
kh_put_m_s2i
[function]
[call site]
02374
cram_stats_add
[function]
[call site]
02375
cram_stats_add
[function]
[call site]
02376
cram_stats_del
[function]
[call site]
02377
__assert_fail
[call site]
02378
kh_get_m_i2i
[function]
[call site]
02379
kh_del_m_i2i
[function]
[call site]
02380
hts_log
[function]
[call site]
02381
hts_log
[function]
[call site]
02382
cram_stats_del
[function]
[call site]
02383
cram_stats_del
[function]
[call site]
02384
cram_stats_del
[function]
[call site]
02385
cram_stats_add
[function]
[call site]
02386
cram_stats_del
[function]
[call site]
02387
cram_stats_add
[function]
[call site]
02388
cram_stats_add
[function]
[call site]
02389
cram_stats_add
[function]
[call site]
02390
cram_stats_add
[function]
[call site]
02391
cram_stats_add
[function]
[call site]
02392
cram_stats_add
[function]
[call site]
02393
cram_stats_add
[function]
[call site]
02394
cram_stats_add
[function]
[call site]
02395
add_read_names
[function]
[call site]
02396
block_append
[function]
[call site]
02397
block_append
[function]
[call site]
02398
cram_stats_add
[function]
[call site]
02399
calloc
[call site]
02400
__assert_fail
[call site]
02401
cram_ref_decr
[function]
[call site]
02402
pthread_mutex_lock
[call site]
02403
pthread_mutex_unlock
[call site]
02404
cram_stats_encoding
[function]
[call site]
02405
pthread_mutex_lock
[call site]
02406
pthread_mutex_unlock
[call site]
02407
hts_log
[function]
[call site]
02408
hts_md5_init
[function]
[call site]
02409
hts_md5_update
[function]
[call site]
02410
hts_md5_final
[function]
[call site]
02411
hts_md5_destroy
[function]
[call site]
02412
cram_stats_encoding
[function]
[call site]
02413
cram_encoder_init
[function]
[call site]
02414
cram_stats_encoding
[function]
[call site]
02415
cram_encoder_init
[function]
[call site]
02416
cram_stats_encoding
[function]
[call site]
02417
cram_encoder_init
[function]
[call site]
02418
cram_encoder_init
[function]
[call site]
02419
cram_encoder_init
[function]
[call site]
02420
cram_stats_encoding
[function]
[call site]
02421
cram_encoder_init
[function]
[call site]
02422
cram_stats_encoding
[function]
[call site]
02423
cram_encoder_init
[function]
[call site]
02424
cram_stats_encoding
[function]
[call site]
02425
cram_encoder_init
[function]
[call site]
02426
cram_stats_encoding
[function]
[call site]
02427
cram_encoder_init
[function]
[call site]
02428
cram_stats_encoding
[function]
[call site]
02429
cram_encoder_init
[function]
[call site]
02430
cram_stats_encoding
[function]
[call site]
02431
cram_encoder_init
[function]
[call site]
02432
cram_stats_encoding
[function]
[call site]
02433
cram_encoder_init
[function]
[call site]
02434
cram_stats_encoding
[function]
[call site]
02435
cram_encoder_init
[function]
[call site]
02436
cram_stats_encoding
[function]
[call site]
02437
cram_encoder_init
[function]
[call site]
02438
cram_stats_encoding
[function]
[call site]
02439
cram_encoder_init
[function]
[call site]
02440
cram_stats_encoding
[function]
[call site]
02441
cram_encoder_init
[function]
[call site]
02442
cram_stats_encoding
[function]
[call site]
02443
cram_encoder_init
[function]
[call site]
02444
cram_stats_encoding
[function]
[call site]
02445
cram_encoder_init
[function]
[call site]
02446
cram_encoder_init
[function]
[call site]
02447
cram_stats_encoding
[function]
[call site]
02448
cram_encoder_init
[function]
[call site]
02449
cram_stats_encoding
[function]
[call site]
02450
cram_encoder_init
[function]
[call site]
02451
cram_stats_encoding
[function]
[call site]
02452
cram_encoder_init
[function]
[call site]
02453
cram_stats_encoding
[function]
[call site]
02454
cram_encoder_init
[function]
[call site]
02455
cram_stats_encoding
[function]
[call site]
02456
cram_encoder_init
[function]
[call site]
02457
cram_stats_encoding
[function]
[call site]
02458
cram_encoder_init
[function]
[call site]
02459
cram_stats_encoding
[function]
[call site]
02460
cram_encoder_init
[function]
[call site]
02461
cram_stats_encoding
[function]
[call site]
02462
cram_encoder_init
[function]
[call site]
02463
cram_encoder_init
[function]
[call site]
02464
cram_encoder_init
[function]
[call site]
02465
cram_encoder_init
[function]
[call site]
02466
cram_encoder_init
[function]
[call site]
02467
hts_log
[function]
[call site]
02468
cram_encode_slice
[function]
[call site]
02469
calloc
[call site]
02470
cram_new_block
[function]
[call site]
02471
cram_new_block
[function]
[call site]
02472
cram_new_block
[function]
[call site]
02473
block_append
[function]
[call site]
02474
cram_allocate_block
[function]
[call site]
02475
cram_new_block
[function]
[call site]
02476
cram_new_block
[function]
[call site]
02477
cram_allocate_block
[function]
[call site]
02478
cram_allocate_block
[function]
[call site]
02479
cram_allocate_block
[function]
[call site]
02480
cram_allocate_block
[function]
[call site]
02481
cram_allocate_block
[function]
[call site]
02482
cram_new_block
[function]
[call site]
02483
cram_allocate_block
[function]
[call site]
02484
cram_new_block
[function]
[call site]
02485
cram_encode_slice_read
[function]
[call site]
02486
hts_log
[function]
[call site]
02487
cram_free_block
[function]
[call site]
02488
cram_free_block
[function]
[call site]
02489
cram_free_block
[function]
[call site]
02490
cram_free_block
[function]
[call site]
02491
cram_compress_slice
[function]
[call site]
02492
cram_compress_block2
[function]
[call site]
02493
pthread_mutex_lock
[call site]
02494
pthread_mutex_unlock
[call site]
02495
cram_compress_by_method
[function]
[call site]
02496
zlib_mem_deflate
[function]
[call site]
02497
deflateInit2_
[call site]
02498
hts_log
[function]
[call site]
02499
hts_log
[function]
[call site]
02500
deflate
[call site]
02501
hts_log
[function]
[call site]
02502
deflate
[call site]
02503
hts_log
[function]
[call site]
02504
deflateEnd
[call site]
02505
hts_log
[function]
[call site]
02506
BZ2_bzBuffToBuffCompress
[call site]
02507
fqz_compress
[function]
[call site]
02508
compress_block_fqz2f
[function]
[call site]
02509
fqz_pick_parameters
[function]
[call site]
02510
calloc
[call site]
02511
fqz_qual_stats
[function]
[call site]
02512
calloc
[call site]
02513
memcmp
[call site]
02514
fast_log
[function]
[call site]
02515
fast_log
[function]
[call site]
02516
fast_log
[function]
[call site]
02517
fast_log
[function]
[call site]
02518
fast_log
[function]
[call site]
02519
fast_log
[function]
[call site]
02520
fast_log
[function]
[call site]
02521
log
[call site]
02522
log
[call site]
02523
log
[call site]
02524
log
[call site]
02525
log
[call site]
02526
log
[call site]
02527
log
[call site]
02528
log
[call site]
02529
log
[call site]
02530
var_put_u32
[function]
[call site]
02531
var_put_u32_safe
[function]
[call site]
02532
fqz_store_parameters
[function]
[call site]
02533
store_array
[function]
[call site]
02534
fqz_store_parameters1
[function]
[call site]
02535
store_array
[function]
[call site]
02536
store_array
[function]
[call site]
02537
store_array
[function]
[call site]
02538
fqz_create_models
[function]
[call site]
02539
RC_SetOutput
[function]
[call site]
02540
RC_SetOutputEnd
[function]
[call site]
02541
RC_StartEncode
[function]
[call site]
02542
compress_new_read
[function]
[call site]
02543
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02544
RC_Encode
[function]
[call site]
02545
RC_ShiftLowCheck
[function]
[call site]
02546
SIMPLE_MODEL256_normalize
[function]
[call site]
02547
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02548
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02549
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02550
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02551
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02552
SIMPLE_MODEL2_normalize
[function]
[call site]
02553
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02554
memcmp
[call site]
02555
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02556
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02557
mm_prefetch
[function]
[call site]
02558
fqz_update_ctx
[function]
[call site]
02559
mm_prefetch
[function]
[call site]
02560
fqz_update_ctx
[function]
[call site]
02561
mm_prefetch
[function]
[call site]
02562
fqz_update_ctx
[function]
[call site]
02563
mm_prefetch
[function]
[call site]
02564
fqz_update_ctx
[function]
[call site]
02565
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02566
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02567
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02568
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02569
mm_prefetch
[function]
[call site]
02570
fqz_update_ctx
[function]
[call site]
02571
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02572
RC_FinishEncode
[function]
[call site]
02573
RC_ShiftLowCheck
[function]
[call site]
02574
RC_OutSize
[function]
[call site]
02575
fqz_destroy_models
[function]
[call site]
02576
fqz_free_parameters
[function]
[call site]
02577
lzma_mem_deflate
[function]
[call site]
02578
lzma_stream_buffer_bound
[call site]
02579
lzma_easy_buffer_encode
[call site]
02580
rans_compress
[function]
[call site]
02581
rans_compress_O1
[function]
[call site]
02582
rans_compress_O0
[function]
[call site]
02583
hist8
[function]
[call site]
02584
htscodecs_tls_calloc
[function]
[call site]
02585
htscodecs_tls_free
[function]
[call site]
02586
__assert_fail
[call site]
02587
RansEncSymbolInit
[function]
[call site]
02588
__assert_fail
[call site]
02589
__assert_fail
[call site]
02590
RansEncInit
[function]
[call site]
02591
RansEncInit
[function]
[call site]
02592
RansEncInit
[function]
[call site]
02593
RansEncInit
[function]
[call site]
02594
RansEncPutSymbol
[function]
[call site]
02595
__assert_fail
[call site]
02596
RansEncPutSymbol
[function]
[call site]
02597
RansEncPutSymbol
[function]
[call site]
02598
RansEncPutSymbol
[function]
[call site]
02599
RansEncPutSymbol
[function]
[call site]
02600
RansEncPutSymbol
[function]
[call site]
02601
RansEncPutSymbol
[function]
[call site]
02602
RansEncFlush
[function]
[call site]
02603
RansEncFlush
[function]
[call site]
02604
RansEncFlush
[function]
[call site]
02605
RansEncFlush
[function]
[call site]
02606
htscodecs_tls_alloc
[function]
[call site]
02607
hist1_4
[function]
[call site]
02608
htscodecs_tls_calloc
[function]
[call site]
02609
htscodecs_tls_free
[function]
[call site]
02610
RansEncSymbolInit
[function]
[call site]
02611
__assert_fail
[call site]
02612
RansEncInit
[function]
[call site]
02613
RansEncInit
[function]
[call site]
02614
RansEncInit
[function]
[call site]
02615
RansEncInit
[function]
[call site]
02616
RansEncPutSymbol
[function]
[call site]
02617
RansEncPutSymbol4
[function]
[call site]
02618
__assert_fail
[call site]
02619
__assert_fail
[call site]
02620
__assert_fail
[call site]
02621
__assert_fail
[call site]
02622
RansEncPutSymbol
[function]
[call site]
02623
RansEncPutSymbol
[function]
[call site]
02624
RansEncPutSymbol
[function]
[call site]
02625
RansEncPutSymbol
[function]
[call site]
02626
RansEncFlush
[function]
[call site]
02627
RansEncFlush
[function]
[call site]
02628
RansEncFlush
[function]
[call site]
02629
RansEncFlush
[function]
[call site]
02630
htscodecs_tls_free
[function]
[call site]
02631
rans_compress_O0
[function]
[call site]
02632
rans_compress_4x16
[function]
[call site]
02633
rans_compress_to_4x16
[function]
[call site]
02634
rans_compress_bound_4x16
[function]
[call site]
02635
var_put_u32
[function]
[call site]
02636
rans_compress_to_4x16
[function]
[call site]
02637
realloc
[call site]
02638
var_put_u32
[function]
[call site]
02639
var_put_u32
[function]
[call site]
02640
var_put_u32
[function]
[call site]
02641
hts_pack
[function]
[call site]
02642
var_put_u32
[function]
[call site]
02643
hts_rle_encode
[function]
[call site]
02644
rle_find_syms
[function]
[call site]
02645
var_put_u32
[function]
[call site]
02646
var_put_u32
[function]
[call site]
02647
var_put_u32
[function]
[call site]
02648
rans_enc_func
[function]
[call site]
02649
pthread_once
[call site]
02650
htscodecs_tls_cpu_init
[function]
[call site]
02651
strerror
[call site]
02652
fprintf
[call site]
02653
fprintf
[call site]
02654
var_put_u32
[function]
[call site]
02655
var_put_u32
[function]
[call site]
02656
var_put_u32
[function]
[call site]
02657
rans_enc_func
[function]
[call site]
02658
arith_compress_to
[function]
[call site]
02659
arith_compress_bound
[function]
[call site]
02660
var_put_u32
[function]
[call site]
02661
var_put_u32
[function]
[call site]
02662
arith_compress_to
[function]
[call site]
02663
arith_compress_to
[function]
[call site]
02664
var_put_u32
[function]
[call site]
02665
var_put_u32
[function]
[call site]
02666
hts_pack
[function]
[call site]
02667
var_put_u32
[function]
[call site]
02668
BZ2_bzBuffToBuffCompress
[call site]
02669
arith_compress_O0_RLE
[function]
[call site]
02670
arith_compress_bound
[function]
[call site]
02671
SIMPLE_MODEL256_init
[function]
[call site]
02672
htscodecs_tls_alloc
[function]
[call site]
02673
SIMPLE_MODEL258_init
[function]
[call site]
02674
RC_SetOutput
[function]
[call site]
02675
RC_SetOutputEnd
[function]
[call site]
02676
RC_StartEncode
[function]
[call site]
02677
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02678
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02679
SIMPLE_MODEL258_normalize
[function]
[call site]
02680
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02681
RC_FinishEncode
[function]
[call site]
02682
htscodecs_tls_free
[function]
[call site]
02683
RC_OutSize
[function]
[call site]
02684
htscodecs_tls_free
[function]
[call site]
02685
arith_compress_O1_RLE
[function]
[call site]
02686
arith_compress_bound
[function]
[call site]
02687
htscodecs_tls_alloc
[function]
[call site]
02688
SIMPLE_MODEL256_init
[function]
[call site]
02689
htscodecs_tls_alloc
[function]
[call site]
02690
htscodecs_tls_free
[function]
[call site]
02691
SIMPLE_MODEL258_init
[function]
[call site]
02692
RC_SetOutput
[function]
[call site]
02693
RC_SetOutputEnd
[function]
[call site]
02694
RC_StartEncode
[function]
[call site]
02695
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02696
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02697
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02698
RC_FinishEncode
[function]
[call site]
02699
htscodecs_tls_free
[function]
[call site]
02700
htscodecs_tls_free
[function]
[call site]
02701
RC_OutSize
[function]
[call site]
02702
htscodecs_tls_free
[function]
[call site]
02703
htscodecs_tls_free
[function]
[call site]
02704
arith_compress_O1
[function]
[call site]
02705
arith_compress_bound
[function]
[call site]
02706
htscodecs_tls_alloc
[function]
[call site]
02707
SIMPLE_MODEL256_init
[function]
[call site]
02708
RC_SetOutput
[function]
[call site]
02709
RC_SetOutputEnd
[function]
[call site]
02710
RC_StartEncode
[function]
[call site]
02711
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02712
RC_FinishEncode
[function]
[call site]
02713
htscodecs_tls_free
[function]
[call site]
02714
RC_OutSize
[function]
[call site]
02715
htscodecs_tls_free
[function]
[call site]
02716
arith_compress_O0
[function]
[call site]
02717
arith_compress_bound
[function]
[call site]
02718
SIMPLE_MODEL256_init
[function]
[call site]
02719
RC_SetOutput
[function]
[call site]
02720
RC_SetOutputEnd
[function]
[call site]
02721
RC_StartEncode
[function]
[call site]
02722
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02723
RC_FinishEncode
[function]
[call site]
02724
RC_OutSize
[function]
[call site]
02725
tok3_encode_names
[function]
[call site]
02726
create_context
[function]
[call site]
02727
build_trie
[function]
[call site]
02728
calloc
[call site]
02729
pool_create
[function]
[call site]
02730
pool_alloc
[function]
[call site]
02731
new_pool
[function]
[call site]
02732
realloc
[call site]
02733
free_context
[function]
[call site]
02734
free_context
[function]
[call site]
02735
encode_name
[function]
[call site]
02736
search_trie
[function]
[call site]
02737
calloc
[call site]
02738
strlen
[call site]
02739
encode_token_dup
[function]
[call site]
02740
encode_token_int
[function]
[call site]
02741
encode_token_type
[function]
[call site]
02742
descriptor_grow
[function]
[call site]
02743
realloc
[call site]
02744
descriptor_grow
[function]
[call site]
02745
encode_token_diff
[function]
[call site]
02746
encode_token_int
[function]
[call site]
02747
memcmp
[call site]
02748
encode_token_match
[function]
[call site]
02749
encode_token_type
[function]
[call site]
02750
encode_token_alpha
[function]
[call site]
02751
encode_token_type
[function]
[call site]
02752
descriptor_grow
[function]
[call site]
02753
encode_token_alpha
[function]
[call site]
02754
__ctype_b_loc
[call site]
02755
__ctype_b_loc
[call site]
02756
__ctype_b_loc
[call site]
02757
memcmp
[call site]
02758
encode_token_match
[function]
[call site]
02759
encode_token_alpha
[function]
[call site]
02760
encode_token_alpha
[function]
[call site]
02761
__ctype_b_loc
[call site]
02762
encode_token_match
[function]
[call site]
02763
encode_token_int1
[function]
[call site]
02764
encode_token_type
[function]
[call site]
02765
descriptor_grow
[function]
[call site]
02766
encode_token_int1_
[function]
[call site]
02767
descriptor_grow
[function]
[call site]
02768
encode_token_int
[function]
[call site]
02769
encode_token_int1_
[function]
[call site]
02770
encode_token_int
[function]
[call site]
02771
__ctype_b_loc
[call site]
02772
__ctype_b_loc
[call site]
02773
encode_token_match
[function]
[call site]
02774
encode_token_int1
[function]
[call site]
02775
encode_token_int
[function]
[call site]
02776
encode_token_int
[function]
[call site]
02777
encode_token_match
[function]
[call site]
02778
encode_token_char
[function]
[call site]
02779
encode_token_type
[function]
[call site]
02780
descriptor_grow
[function]
[call site]
02781
encode_token_char
[function]
[call site]
02782
encode_token_end
[function]
[call site]
02783
encode_token_type
[function]
[call site]
02784
realloc
[call site]
02785
free_context
[function]
[call site]
02786
arith_compress_bound
[function]
[call site]
02787
free_context
[function]
[call site]
02788
compress
[function]
[call site]
02789
arith_encode
[function]
[call site]
02790
arith_compress_to
[function]
[call site]
02791
var_put_u32
[function]
[call site]
02792
rans_encode
[function]
[call site]
02793
rans_compress_to_4x16
[function]
[call site]
02794
var_put_u32
[function]
[call site]
02795
free_context
[function]
[call site]
02796
memcmp
[call site]
02797
free_context
[function]
[call site]
02798
free_context
[function]
[call site]
02799
pthread_mutex_lock
[call site]
02800
pthread_mutex_unlock
[call site]
02801
pthread_mutex_unlock
[call site]
02802
cram_compress_by_method
[function]
[call site]
02803
cram_compress_by_method
[function]
[call site]
02804
hts_log
[function]
[call site]
02805
cram_block_method2str
[function]
[call site]
02806
hts_log
[function]
[call site]
02807
pthread_mutex_lock
[call site]
02808
pthread_mutex_unlock
[call site]
02809
cram_compress_block2
[function]
[call site]
02810
cram_compress_block2
[function]
[call site]
02811
cram_compress_block2
[function]
[call site]
02812
cram_compress_block2
[function]
[call site]
02813
cram_compress_block2
[function]
[call site]
02814
cram_compress_block2
[function]
[call site]
02815
cram_compress_block2
[function]
[call site]
02816
cram_compress_block2
[function]
[call site]
02817
cram_compress_block2
[function]
[call site]
02818
cram_compress_block2
[function]
[call site]
02819
cram_compress_block2
[function]
[call site]
02820
cram_compress_block2
[function]
[call site]
02821
cram_compress_block2
[function]
[call site]
02822
cram_compress_block2
[function]
[call site]
02823
cram_compress_block2
[function]
[call site]
02824
realloc
[call site]
02825
cram_free_block
[function]
[call site]
02826
cram_encode_slice_header
[function]
[call site]
02827
cram_new_block
[function]
[call site]
02828
cram_free_block
[function]
[call site]
02829
cram_free_block
[function]
[call site]
02830
__assert_fail
[call site]
02831
cram_encode_compression_header
[function]
[call site]
02832
cram_new_block
[function]
[call site]
02833
cram_new_block
[function]
[call site]
02834
itf8_put_blk
[function]
[call site]
02835
itf8_put
[function]
[call site]
02836
block_append
[function]
[call site]
02837
itf8_put_blk
[function]
[call site]
02838
itf8_put_blk
[function]
[call site]
02839
itf8_put_blk
[function]
[call site]
02840
itf8_put_blk
[function]
[call site]
02841
itf8_put_blk
[function]
[call site]
02842
kh_destroy_map
[function]
[call site]
02843
kh_init_map
[function]
[call site]
02844
calloc
[call site]
02845
kh_put_map
[function]
[call site]
02846
kh_resize_map
[function]
[call site]
02847
realloc
[call site]
02848
__ac_FNV1a_hash_string
[function]
[call site]
02849
strcmp
[call site]
02850
kh_put_map
[function]
[call site]
02851
kh_put_map
[function]
[call site]
02852
kh_put_map
[function]
[call site]
02853
kh_put_map
[function]
[call site]
02854
kh_put_map
[function]
[call site]
02855
kh_put_map
[function]
[call site]
02856
kh_put_map
[function]
[call site]
02857
kh_put_map
[function]
[call site]
02858
block_append
[function]
[call site]
02859
block_append_char
[function]
[call site]
02860
sub_idx
[function]
[call site]
02861
sub_idx
[function]
[call site]
02862
sub_idx
[function]
[call site]
02863
sub_idx
[function]
[call site]
02864
sub_idx
[function]
[call site]
02865
sub_idx
[function]
[call site]
02866
sub_idx
[function]
[call site]
02867
sub_idx
[function]
[call site]
02868
sub_idx
[function]
[call site]
02869
sub_idx
[function]
[call site]
02870
sub_idx
[function]
[call site]
02871
sub_idx
[function]
[call site]
02872
sub_idx
[function]
[call site]
02873
sub_idx
[function]
[call site]
02874
sub_idx
[function]
[call site]
02875
sub_idx
[function]
[call site]
02876
sub_idx
[function]
[call site]
02877
sub_idx
[function]
[call site]
02878
sub_idx
[function]
[call site]
02879
sub_idx
[function]
[call site]
02880
block_append
[function]
[call site]
02881
block_append
[function]
[call site]
02882
hts_log
[function]
[call site]
02883
block_append
[function]
[call site]
02884
block_append
[function]
[call site]
02885
block_append
[function]
[call site]
02886
hts_log
[function]
[call site]
02887
cram_free_block
[function]
[call site]
02888
cram_ref_decr
[function]
[call site]
02889
cram_ref_decr
[function]
[call site]
02890
cram_flush_container2
[function]
[call site]
02891
htell
[function]
[call site]
02892
cram_write_container
[function]
[call site]
02893
itf8_put
[function]
[call site]
02894
crc32
[call site]
02895
hwrite
[function]
[call site]
02896
htell
[function]
[call site]
02897
cram_write_block
[function]
[call site]
02898
__assert_fail
[call site]
02899
hputc
[function]
[call site]
02900
hputc2
[function]
[call site]
02901
flush_buffer
[function]
[call site]
02902
hputc
[function]
[call site]
02903
hwrite
[function]
[call site]
02904
hwrite
[function]
[call site]
02905
hwrite
[function]
[call site]
02906
__assert_fail
[call site]
02907
crc32
[call site]
02908
crc32
[call site]
02909
crc32
[call site]
02910
int32_encode
[function]
[call site]
02911
hwrite
[function]
[call site]
02912
htell
[function]
[call site]
02913
cram_write_block
[function]
[call site]
02914
cram_write_block
[function]
[call site]
02915
htell
[function]
[call site]
02916
cram_index_slice
[function]
[call site]
02917
hts_log
[function]
[call site]
02918
cram_index_build_multiref
[function]
[call site]
02919
cram_decode_slice
[function]
[call site]
02920
cram_dependent_data_series
[function]
[call site]
02921
cram_uncompress_block
[function]
[call site]
02922
cram_uncompress_block
[function]
[call site]
02923
calloc
[call site]
02924
cram_codec_to_id
[function]
[call site]
02925
cram_codec_to_id
[function]
[call site]
02926
cram_codec_to_id
[function]
[call site]
02927
hts_log
[function]
[call site]
02928
cram_uncompress_block
[function]
[call site]
02929
cram_codec_to_id
[function]
[call site]
02930
cram_uncompress_block
[function]
[call site]
02931
cram_codec_to_id
[function]
[call site]
02932
cram_codec_to_id
[function]
[call site]
02933
cram_decode_estimate_sizes
[function]
[call site]
02934
cram_codec_to_id
[function]
[call site]
02935
cram_ds_unique
[function]
[call site]
02936
cram_codec_to_id
[function]
[call site]
02937
cram_get_block_by_id
[function]
[call site]
02938
cram_codec_to_id
[function]
[call site]
02939
cram_ds_unique
[function]
[call site]
02940
cram_get_block_by_id
[function]
[call site]
02941
block_resize_exact
[function]
[call site]
02942
block_resize_exact
[function]
[call site]
02943
block_resize_exact
[function]
[call site]
02944
strcmp
[call site]
02945
hts_log
[function]
[call site]
02946
cram_get_block_by_id
[function]
[call site]
02947
cram_uncompress_block
[function]
[call site]
02948
hts_log
[function]
[call site]
02949
cram_get_ref
[function]
[call site]
02950
hts_log
[function]
[call site]
02951
pthread_mutex_lock
[call site]
02952
pthread_mutex_lock
[call site]
02953
pthread_mutex_unlock
[call site]
02954
pthread_mutex_unlock
[call site]
02955
hts_log
[function]
[call site]
02956
memcmp
[call site]
02957
hts_log
[function]
[call site]
02958
hts_log
[function]
[call site]
02959
hts_md5_init
[function]
[call site]
02960
hts_md5_update
[function]
[call site]
02961
hts_md5_final
[function]
[call site]
02962
hts_md5_destroy
[function]
[call site]
02963
cram_get_block_by_id
[function]
[call site]
02964
hts_md5_init
[function]
[call site]
02965
hts_md5_update
[function]
[call site]
02966
hts_md5_final
[function]
[call site]
02967
hts_md5_destroy
[function]
[call site]
02968
memcmp
[call site]
02969
sam_hdr_tid2name
[function]
[call site]
02970
hts_log
[function]
[call site]
02971
md5_print
[function]
[call site]
02972
hts_log
[function]
[call site]
02973
md5_print
[function]
[call site]
02974
hts_log
[function]
[call site]
02975
sam_hdr_find_tag_id
[function]
[call site]
02976
sam_hdr_fill_hrecs
[function]
[call site]
02977
sam_hrecs_find_type_id
[function]
[call site]
02978
sam_hrecs_find_key
[function]
[call site]
02979
kputsn
[function]
[call site]
02980
hts_log
[function]
[call site]
02981
hts_log
[function]
[call site]
02982
ks_free
[function]
[call site]
02983
ks_initialize
[function]
[call site]
02984
pthread_mutex_lock
[call site]
02985
pthread_mutex_lock
[call site]
02986
calloc
[call site]
02987
pthread_mutex_unlock
[call site]
02988
pthread_mutex_unlock
[call site]
02989
pthread_mutex_lock
[call site]
02990
pthread_mutex_unlock
[call site]
02991
cram_get_ref
[function]
[call site]
02992
pthread_mutex_lock
[call site]
02993
pthread_mutex_unlock
[call site]
02994
pthread_mutex_lock
[call site]
02995
pthread_mutex_unlock
[call site]
02996
cram_ref_decr
[function]
[call site]
02997
pthread_mutex_lock
[call site]
02998
pthread_mutex_lock
[call site]
02999
pthread_mutex_unlock
[call site]
03000
pthread_mutex_unlock
[call site]
03001
hts_log
[function]
[call site]
03002
hts_log
[function]
[call site]
03003
pthread_mutex_lock
[call site]
03004
pthread_mutex_unlock
[call site]
03005
cram_decode_tlen
[function]
[call site]
03006
cram_decode_tlen
[function]
[call site]
03007
cram_decode_tlen
[function]
[call site]
03008
cram_decode_aux_1_0
[function]
[call site]
03009
map_find
[function]
[call site]
03010
block_append
[function]
[call site]
03011
cram_decode_aux
[function]
[call site]
03012
strlen
[call site]
03013
sam_hdr_line_name
[function]
[call site]
03014
sam_hdr_fill_hrecs
[function]
[call site]
03015
hts_log
[function]
[call site]
03016
hts_log
[function]
[call site]
03017
hts_log
[function]
[call site]
03018
hts_log
[function]
[call site]
03019
strlen
[call site]
03020
block_append
[function]
[call site]
03021
block_append
[function]
[call site]
03022
block_append_char
[function]
[call site]
03023
block_append
[function]
[call site]
03024
map_find
[function]
[call site]
03025
block_append
[function]
[call site]
03026
hts_log
[function]
[call site]
03027
block_grow
[function]
[call site]
03028
block_grow
[function]
[call site]
03029
hts_log
[function]
[call site]
03030
cram_decode_seq
[function]
[call site]
03031
block_append
[function]
[call site]
03032
realloc
[call site]
03033
hts_log
[function]
[call site]
03034
hts_log
[function]
[call site]
03035
memchr
[call site]
03036
add_md_char
[function]
[call site]
03037
block_append_uint
[function]
[call site]
03038
block_grow
[function]
[call site]
03039
append_uint32
[function]
[call site]
03040
block_append_char
[function]
[call site]
03041
block_append_uint
[function]
[call site]
03042
add_md_char
[function]
[call site]
03043
block_append_uint
[function]
[call site]
03044
block_append_char
[function]
[call site]
03045
block_append
[function]
[call site]
03046
block_append_char
[function]
[call site]
03047
block_append
[function]
[call site]
03048
block_append_uint
[function]
[call site]
03049
block_append_uint
[function]
[call site]
03050
block_append_uint
[function]
[call site]
03051
block_append_char
[function]
[call site]
03052
block_append_uint
[function]
[call site]
03053
block_append_char
[function]
[call site]
03054
hts_log
[function]
[call site]
03055
hts_log
[function]
[call site]
03056
memchr
[call site]
03057
add_md_char
[function]
[call site]
03058
realloc
[call site]
03059
block_append_uint
[function]
[call site]
03060
realloc
[call site]
03061
block_append_char
[function]
[call site]
03062
block_append
[function]
[call site]
03063
pthread_mutex_lock
[call site]
03064
cram_ref_decr
[function]
[call site]
03065
cram_ref_decr
[function]
[call site]
03066
pthread_mutex_unlock
[call site]
03067
cram_decode_slice_xref
[function]
[call site]
03068
hts_log
[function]
[call site]
03069
cram_free_block
[function]
[call site]
03070
block_resize_exact
[function]
[call site]
03071
block_resize_exact
[function]
[call site]
03072
block_resize_exact
[function]
[call site]
03073
block_resize_exact
[function]
[call site]
03074
pthread_mutex_lock
[call site]
03075
cram_ref_decr
[function]
[call site]
03076
pthread_mutex_unlock
[call site]
03077
hts_log
[function]
[call site]
03078
snprintf
[call site]
03079
strlen
[call site]
03080
bgzf_write
[function]
[call site]
03081
hwrite
[function]
[call site]
03082
__assert_fail
[call site]
03083
lazy_flush
[function]
[call site]
03084
mt_queue
[function]
[call site]
03085
bgzf_flush
[function]
[call site]
03086
snprintf
[call site]
03087
strlen
[call site]
03088
bgzf_write
[function]
[call site]
03089
snprintf
[call site]
03090
strlen
[call site]
03091
bgzf_write
[function]
[call site]
03092
__errno_location
[call site]
03093
hts_tpool_dispatch2
[function]
[call site]
03094
hts_tpool_dispatch3
[function]
[call site]
03095
cram_flush_thread
[function]
[call site]
03096
cram_encode_container
[function]
[call site]
03097
hts_log
[function]
[call site]
03098
__errno_location
[call site]
03099
cram_flush_result
[function]
[call site]
03100
hts_tpool_next_result
[function]
[call site]
03101
pthread_mutex_lock
[call site]
03102
hts_tpool_next_result_locked
[function]
[call site]
03103
pthread_mutex_unlock
[call site]
03104
hts_tpool_result_data
[function]
[call site]
03105
hts_tpool_delete_result
[function]
[call site]
03106
cram_flush_container2
[function]
[call site]
03107
cram_free_slice
[function]
[call site]
03108
cram_free_slice
[function]
[call site]
03109
cram_free_container
[function]
[call site]
03110
hts_tpool_delete_result
[function]
[call site]
03111
cram_free_container
[function]
[call site]
03112
hts_usleep
[function]
[call site]
03113
cram_drain_rqueue
[function]
[call site]
03114
hts_tpool_process_flush
[function]
[call site]
03115
cram_flush_result
[function]
[call site]
03116
hts_tpool_process_destroy
[function]
[call site]
03117
pthread_mutex_destroy
[call site]
03118
pthread_mutex_destroy
[call site]
03119
pthread_mutex_destroy
[call site]
03120
pthread_mutex_destroy
[call site]
03121
cram_write_eof_block
[function]
[call site]
03122
cram_encode_compression_header
[function]
[call site]
03123
cram_write_container
[function]
[call site]
03124
cram_write_block
[function]
[call site]
03125
cram_close
[function]
[call site]
03126
free_bam_list
[function]
[call site]
03127
hclose
[function]
[call site]
03128
cram_free_file_def
[function]
[call site]
03129
sam_hdr_destroy
[function]
[call site]
03130
cram_free_container
[function]
[call site]
03131
cram_free_container
[function]
[call site]
03132
refs_free
[function]
[call site]
03133
kh_destroy_m_metrics
[function]
[call site]
03134
cram_index_free
[function]
[call site]
03135
cram_index_free_recurse
[function]
[call site]
03136
cram_index_free_recurse
[function]
[call site]
03137
hts_tpool_destroy
[function]
[call site]
03138
bgzf_close
[function]
[call site]
03139
cram_free_block
[function]
[call site]
03140
kh_destroy_map
[function]
[call site]
03141
cram_free_block
[function]
[call site]
03142
sam_state_destroy
[function]
[call site]
03143
fastq_state_destroy
[function]
[call site]
03144
kh_destroy_tag
[function]
[call site]
03145
ks_free
[function]
[call site]
03146
ks_initialize
[function]
[call site]
03147
ks_free
[function]
[call site]
03148
ks_free
[function]
[call site]
03149
bgzf_close
[function]
[call site]
03150
hclose
[function]
[call site]
03151
hts_idx_close_otf_fp
[function]
[call site]
03152
need_idx_ugly_delay_hack
[function]
[call site]
03153
idx_write_uint64
[function]
[call site]
03154
ed_is_big
[function]
[call site]
03155
ed_swap_8
[function]
[call site]
03156
bgzf_write
[function]
[call site]
03157
bgzf_close
[function]
[call site]
03158
__errno_location
[call site]
03159
sam_hdr_destroy
[function]
[call site]
03160
hts_idx_destroy
[function]
[call site]
03161
cram_index_free
[function]
[call site]
03162
kh_destroy_bin
[function]
[call site]
03163
hts_filter_free
[function]
[call site]
03164
__errno_location
[call site]
03165
view_sam
[function]
[call site]
03166
abort
[call site]
03167
hopen
[function]
[call site]
03168
hts_hopen
[function]
[call site]
03169
hclose
[function]
[call site]
03170
abort
[call site]
03171
hts_open
[function]
[call site]
03172
hts_open_format
[function]
[call site]
03173
strncpy
[call site]
03174
strchr
[call site]
03175
strchr
[call site]
03176
strchr
[call site]
03177
strstr
[call site]
03178
strdup
[call site]
03179
hopen
[function]
[call site]
03180
hts_hopen
[function]
[call site]
03181
hts_opt_apply
[function]
[call site]
03182
__errno_location
[call site]
03183
__errno_location
[call site]
03184
__errno_location
[call site]
03185
__errno_location
[call site]
03186
strerror
[call site]
03187
hts_log
[function]
[call site]
03188
hclose_abruptly
[function]
[call site]
03189
abort
[call site]
03190
sam_hdr_read
[function]
[call site]
03191
__errno_location
[call site]
03192
bam_hdr_read
[function]
[call site]
03193
bgzf_check_EOF
[function]
[call site]
03194
pthread_mutex_lock
[call site]
03195
pthread_cond_signal
[call site]
03196
hts_tpool_wake_dispatch
[function]
[call site]
03197
pthread_mutex_unlock
[call site]
03198
pthread_cond_wait
[call site]
03199
pthread_cond_signal
[call site]
03200
abort
[call site]
03201
pthread_mutex_unlock
[call site]
03202
bgzf_check_EOF_common
[function]
[call site]
03203
htell
[function]
[call site]
03204
hseek
[function]
[call site]
03205
__errno_location
[call site]
03206
hclearerr
[function]
[call site]
03207
__errno_location
[call site]
03208
hclearerr
[function]
[call site]
03209
hread
[function]
[call site]
03210
hseek
[function]
[call site]
03211
memcmp
[call site]
03212
perror
[call site]
03213
hts_log
[function]
[call site]
03214
bgzf_read
[function]
[call site]
03215
memcmp
[call site]
03216
hts_log
[function]
[call site]
03217
sam_hdr_init
[function]
[call site]
03218
bgzf_read
[function]
[call site]
03219
le_to_u32
[function]
[call site]
03220
bgzf_read
[function]
[call site]
03221
bgzf_read
[function]
[call site]
03222
ed_swap_4p
[function]
[call site]
03223
ed_swap_4
[function]
[call site]
03224
calloc
[call site]
03225
calloc
[call site]
03226
bgzf_read
[function]
[call site]
03227
ed_swap_4p
[function]
[call site]
03228
bgzf_read
[function]
[call site]
03229
realloc
[call site]
03230
bgzf_read
[function]
[call site]
03231
ed_swap_4p
[function]
[call site]
03232
hts_log
[function]
[call site]
03233
hts_log
[function]
[call site]
03234
hts_log
[function]
[call site]
03235
sam_hdr_destroy
[function]
[call site]
03236
sam_hdr_sanitise
[function]
[call site]
03237
hts_log
[function]
[call site]
03238
sam_hdr_destroy
[function]
[call site]
03239
hts_log
[function]
[call site]
03240
hts_log
[function]
[call site]
03241
hts_log
[function]
[call site]
03242
sam_hdr_destroy
[function]
[call site]
03243
realloc
[call site]
03244
sam_hdr_destroy
[function]
[call site]
03245
sam_hdr_dup
[function]
[call site]
03246
sam_hdr_init
[function]
[call site]
03247
calloc
[call site]
03248
calloc
[call site]
03249
strdup
[call site]
03250
sam_hdr_dup_sdict
[function]
[call site]
03251
kh_init_s2i
[function]
[call site]
03252
kh_get_s2i
[function]
[call site]
03253
kh_put_s2i
[function]
[call site]
03254
kh_destroy_s2i
[function]
[call site]
03255
sam_hrecs_rebuild_text
[function]
[call site]
03256
kputsn
[function]
[call site]
03257
sam_hrecs_rebuild_lines
[function]
[call site]
03258
kputsn
[function]
[call site]
03259
build_header_line
[function]
[call site]
03260
kputc_
[function]
[call site]
03261
kputsn
[function]
[call site]
03262
kputc_
[function]
[call site]
03263
kputsn
[function]
[call site]
03264
kputc
[function]
[call site]
03265
ks_release
[function]
[call site]
03266
ks_release
[function]
[call site]
03267
sam_hdr_update_target_arrays
[function]
[call site]
03268
sam_hdr_destroy
[function]
[call site]
03269
sam_hdr_sanitise
[function]
[call site]
03270
sam_hdr_create
[function]
[call site]
03271
sam_hdr_init
[function]
[call site]
03272
kh_init_s2i
[function]
[call site]
03273
hts_getline
[function]
[call site]
03274
hts_log
[function]
[call site]
03275
abort
[call site]
03276
kgetline2
[function]
[call site]
03277
ks_resize
[function]
[call site]
03278
hgetln
[function]
[call site]
03279
herrno
[function]
[call site]
03280
__errno_location
[call site]
03281
bgzf_getline
[function]
[call site]
03282
bgzf_read_block
[function]
[call site]
03283
memchr
[call site]
03284
ks_expand
[function]
[call site]
03285
bgzf_htell
[function]
[call site]
03286
abort
[call site]
03287
strncmp
[call site]
03288
strncmp
[call site]
03289
hts_log
[function]
[call site]
03290
calloc
[call site]
03291
strncpy
[call site]
03292
strncmp
[call site]
03293
strtoll
[call site]
03294
hts_log
[function]
[call site]
03295
kh_put_s2i
[function]
[call site]
03296
hts_log
[function]
[call site]
03297
kh_init_s2i
[function]
[call site]
03298
kh_put_s2i
[function]
[call site]
03299
hts_log
[function]
[call site]
03300
warn_if_known_stderr
[function]
[call site]
03301
strstr
[call site]
03302
known_stderr
[function]
[call site]
03303
hts_log
[function]
[call site]
03304
hts_log
[function]
[call site]
03305
strstr
[call site]
03306
known_stderr
[function]
[call site]
03307
strstr
[call site]
03308
known_stderr
[function]
[call site]
03309
hts_log
[function]
[call site]
03310
warn_if_known_stderr
[function]
[call site]
03311
valid_sam_header_type
[function]
[call site]
03312
hts_log
[function]
[call site]
03313
warn_if_known_stderr
[function]
[call site]
03314
kputsn
[function]
[call site]
03315
kputc
[function]
[call site]
03316
bgzf_peek
[function]
[call site]
03317
bgzf_read_block
[function]
[call site]
03318
hts_log
[function]
[call site]
03319
hpeek
[function]
[call site]
03320
strstr
[call site]
03321
hopen
[function]
[call site]
03322
kgetline
[function]
[call site]
03323
strlen
[call site]
03324
hgets
[function]
[call site]
03325
strchr
[call site]
03326
calloc
[call site]
03327
kh_put_s2i
[function]
[call site]
03328
strtoll
[call site]
03329
hts_log
[function]
[call site]
03330
kh_init_s2i
[function]
[call site]
03331
kh_put_s2i
[function]
[call site]
03332
kputs
[function]
[call site]
03333
kputsn
[function]
[call site]
03334
kputs
[function]
[call site]
03335
kputll
[function]
[call site]
03336
kputc
[function]
[call site]
03337
ks_free
[function]
[call site]
03338
hclose
[function]
[call site]
03339
hts_log
[function]
[call site]
03340
kh_destroy_s2i
[function]
[call site]
03341
kputsn
[function]
[call site]
03342
ks_release
[function]
[call site]
03343
sam_hdr_sanitise
[function]
[call site]
03344
sam_hdr_destroy
[function]
[call site]
03345
ks_free
[function]
[call site]
03346
kh_destroy_s2i
[function]
[call site]
03347
kh_destroy_s2i
[function]
[call site]
03348
sam_hdr_init
[function]
[call site]
03349
__errno_location
[call site]
03350
__errno_location
[call site]
03351
hts_close_or_abort
[function]
[call site]
03352
hts_close
[function]
[call site]
03353
abort
[call site]
03354
hts_close
[function]
[call site]
03355
hts_close
[function]
[call site]
03356
sam_hdr_count_lines
[function]
[call site]
03357
sam_hdr_fill_hrecs
[function]
[call site]
03358
sam_hrecs_find_type_id
[function]
[call site]
03359
sam_hdr_write
[function]
[call site]
03360
__errno_location
[call site]
03361
bam_hdr_write
[function]
[call site]
03362
sam_hrecs_rebuild_text
[function]
[call site]
03363
hts_log
[function]
[call site]
03364
hts_log
[function]
[call site]
03365
hts_log
[function]
[call site]
03366
hts_log
[function]
[call site]
03367
hts_log
[function]
[call site]
03368
hts_log
[function]
[call site]
03369
bgzf_write
[function]
[call site]
03370
ed_swap_4
[function]
[call site]
03371
bgzf_write
[function]
[call site]
03372
bgzf_write
[function]
[call site]
03373
ed_swap_4
[function]
[call site]
03374
bgzf_write
[function]
[call site]
03375
bgzf_write
[function]
[call site]
03376
bgzf_write
[function]
[call site]
03377
bgzf_write
[function]
[call site]
03378
strlen
[call site]
03379
ed_swap_4
[function]
[call site]
03380
bgzf_write
[function]
[call site]
03381
bgzf_write
[function]
[call site]
03382
bgzf_write
[function]
[call site]
03383
ed_swap_4
[function]
[call site]
03384
bgzf_write
[function]
[call site]
03385
bgzf_write
[function]
[call site]
03386
bgzf_flush
[function]
[call site]
03387
cram_set_header2
[function]
[call site]
03388
sam_hdr_destroy
[function]
[call site]
03389
sam_hdr_dup
[function]
[call site]
03390
refs_from_header
[function]
[call site]
03391
cram_load_reference
[function]
[call site]
03392
cram_write_SAM_hdr
[function]
[call site]
03393
cram_write_file_def
[function]
[call site]
03394
hwrite
[function]
[call site]
03395
sam_hrecs_find_rg
[function]
[call site]
03396
sam_hdr_add_line
[function]
[call site]
03397
sam_hdr_fill_hrecs
[function]
[call site]
03398
sam_hrecs_vadd
[function]
[call site]
03399
rebuild_target_arrays
[function]
[call site]
03400
redact_header_text
[function]
[call site]
03401
refs_from_header
[function]
[call site]
03402
refs2id
[function]
[call site]
03403
sam_hrecs_find_type_id
[function]
[call site]
03404
sam_hrecs_find_key
[function]
[call site]
03405
cram_get_ref
[function]
[call site]
03406
hts_log
[function]
[call site]
03407
hts_log
[function]
[call site]
03408
hts_log
[function]
[call site]
03409
pthread_mutex_lock
[call site]
03410
pthread_mutex_unlock
[call site]
03411
hts_md5_init
[function]
[call site]
03412
hts_md5_update
[function]
[call site]
03413
hts_md5_final
[function]
[call site]
03414
hts_md5_destroy
[function]
[call site]
03415
cram_ref_decr
[function]
[call site]
03416
hts_md5_hex
[function]
[call site]
03417
sam_hdr_update_line
[function]
[call site]
03418
sam_hdr_fill_hrecs
[function]
[call site]
03419
sam_hrecs_find_type_id
[function]
[call site]
03420
check_for_name_update
[function]
[call site]
03421
TYPEKEY
[function]
[call site]
03422
TYPEKEY
[function]
[call site]
03423
TYPEKEY
[function]
[call site]
03424
sam_hrecs_find_key
[function]
[call site]
03425
__assert_fail
[call site]
03426
strcmp
[call site]
03427
strcmp
[call site]
03428
kh_get_m_s2i
[function]
[call site]
03429
hts_log
[function]
[call site]
03430
TYPEKEY
[function]
[call site]
03431
hts_log
[function]
[call site]
03432
sam_hrecs_vupdate
[function]
[call site]
03433
kh_get_m_s2i
[function]
[call site]
03434
sam_hrecs_find_key
[function]
[call site]
03435
__assert_fail
[call site]
03436
__assert_fail
[call site]
03437
__assert_fail
[call site]
03438
kh_del_m_s2i
[function]
[call site]
03439
kh_put_m_s2i
[function]
[call site]
03440
hts_log
[function]
[call site]
03441
TYPEKEY
[function]
[call site]
03442
sam_hrecs_update_hashes
[function]
[call site]
03443
rebuild_target_arrays
[function]
[call site]
03444
redact_header_text
[function]
[call site]
03445
full_path
[function]
[call site]
03446
strlen
[call site]
03447
hisremote
[function]
[call site]
03448
hts_log
[function]
[call site]
03449
strncpy
[call site]
03450
toupper_c
[function]
[call site]
03451
strncpy
[call site]
03452
getcwd
[call site]
03453
strlen
[call site]
03454
strncpy
[call site]
03455
snprintf
[call site]
03456
sam_hdr_update_line
[function]
[call site]
03457
sam_hdr_length
[function]
[call site]
03458
sam_hdr_rebuild
[function]
[call site]
03459
rebuild_target_arrays
[function]
[call site]
03460
hts_log
[function]
[call site]
03461
sam_hdr_link_pg
[function]
[call site]
03462
sam_hdr_fill_hrecs
[function]
[call site]
03463
realloc
[call site]
03464
calloc
[call site]
03465
__assert_fail
[call site]
03466
kh_get_m_s2i
[function]
[call site]
03467
hts_log
[function]
[call site]
03468
hts_log
[function]
[call site]
03469
redact_header_text
[function]
[call site]
03470
hts_log
[function]
[call site]
03471
sam_hrecs_rebuild_text
[function]
[call site]
03472
ks_free
[function]
[call site]
03473
hts_log
[function]
[call site]
03474
ks_len
[function]
[call site]
03475
ks_release
[function]
[call site]
03476
hts_log
[function]
[call site]
03477
int32_encode
[function]
[call site]
03478
sam_hdr_str
[function]
[call site]
03479
sam_hdr_rebuild
[function]
[call site]
03480
hwrite
[function]
[call site]
03481
cram_new_block
[function]
[call site]
03482
cram_new_container
[function]
[call site]
03483
calloc
[call site]
03484
calloc
[call site]
03485
cram_new_compression_header
[function]
[call site]
03486
calloc
[call site]
03487
cram_new_block
[function]
[call site]
03488
kh_init_m_s2i
[function]
[call site]
03489
cram_free_block
[function]
[call site]
03490
string_pool_create
[function]
[call site]
03491
kh_destroy_m_s2i
[function]
[call site]
03492
cram_free_block
[function]
[call site]
03493
cram_stats_create
[function]
[call site]
03494
calloc
[call site]
03495
kh_init_m_tagmap
[function]
[call site]
03496
calloc
[call site]
03497
cram_free_block
[function]
[call site]
03498
cram_free_container
[function]
[call site]
03499
int32_put_blk
[function]
[call site]
03500
block_append
[function]
[call site]
03501
sam_hdr_str
[function]
[call site]
03502
block_append
[function]
[call site]
03503
cram_compress_block
[function]
[call site]
03504
cram_compress_block2
[function]
[call site]
03505
cram_free_block
[function]
[call site]
03506
cram_free_container
[function]
[call site]
03507
calloc
[call site]
03508
cram_free_block
[function]
[call site]
03509
cram_free_container
[function]
[call site]
03510
block_append
[function]
[call site]
03511
cram_write_container
[function]
[call site]
03512
cram_free_block
[function]
[call site]
03513
cram_free_container
[function]
[call site]
03514
cram_write_block
[function]
[call site]
03515
cram_free_block
[function]
[call site]
03516
cram_free_container
[function]
[call site]
03517
block_resize
[function]
[call site]
03518
cram_write_block
[function]
[call site]
03519
cram_free_block
[function]
[call site]
03520
cram_free_container
[function]
[call site]
03521
cram_free_block
[function]
[call site]
03522
cram_free_container
[function]
[call site]
03523
hflush
[function]
[call site]
03524
sam_hrecs_rebuild_text
[function]
[call site]
03525
strstr
[call site]
03526
bgzf_write
[function]
[call site]
03527
hwrite
[function]
[call site]
03528
kputsn
[function]
[call site]
03529
kputs
[function]
[call site]
03530
kputsn
[function]
[call site]
03531
kputw
[function]
[call site]
03532
kputc
[function]
[call site]
03533
bgzf_write
[function]
[call site]
03534
hwrite
[function]
[call site]
03535
bgzf_flush
[function]
[call site]
03536
hflush
[function]
[call site]
03537
__errno_location
[call site]
03538
bam_init1
[function]
[call site]
03539
calloc
[call site]
03540
sam_read1
[function]
[call site]
03541
sam_read1_bam
[function]
[call site]
03542
bam_read1
[function]
[call site]
03543
bgzf_read_small
[function]
[call site]
03544
bgzf_read
[function]
[call site]
03545
ed_swap_4p
[function]
[call site]
03546
bgzf_read
[function]
[call site]
03547
le_to_u32
[function]
[call site]
03548
le_to_i32
[function]
[call site]
03549
le_to_u32
[function]
[call site]
03550
le_to_u32
[function]
[call site]
03551
le_to_u32
[function]
[call site]
03552
le_to_u32
[function]
[call site]
03553
le_to_i32
[function]
[call site]
03554
le_to_i32
[function]
[call site]
03555
realloc_bam_data
[function]
[call site]
03556
sam_realloc_bam_data
[function]
[call site]
03557
__errno_location
[call site]
03558
__errno_location
[call site]
03559
bam_get_mempolicy
[function]
[call site]
03560
realloc
[call site]
03561
bam_get_mempolicy
[function]
[call site]
03562
bam_set_mempolicy
[function]
[call site]
03563
bgzf_read_small
[function]
[call site]
03564
fixup_missing_qname_nul
[function]
[call site]
03565
realloc_bam_data
[function]
[call site]
03566
bgzf_read_small
[function]
[call site]
03567
swap_data
[function]
[call site]
03568
ed_swap_4p
[function]
[call site]
03569
bam_tag2cigar
[function]
[call site]
03570
bam_aux_get
[function]
[call site]
03571
__errno_location
[call site]
03572
__errno_location
[call site]
03573
__errno_location
[call site]
03574
le_to_u32
[function]
[call site]
03575
possibly_expand_bam_data
[function]
[call site]
03576
__errno_location
[call site]
03577
sam_realloc_bam_data
[function]
[call site]
03578
bam_endpos
[function]
[call site]
03579
bam_cigar2rlen
[function]
[call site]
03580
hts_reg2bin
[function]
[call site]
03581
hts_log
[function]
[call site]
03582
bam_cigar2rqlens
[function]
[call site]
03583
hts_reg2bin
[function]
[call site]
03584
hts_log
[function]
[call site]
03585
__errno_location
[call site]
03586
sam_read1_cram
[function]
[call site]
03587
cram_get_bam_seq
[function]
[call site]
03588
cram_get_seq
[function]
[call site]
03589
cram_next_slice
[function]
[call site]
03590
cram_first_slice
[function]
[call site]
03591
cram_free_container
[function]
[call site]
03592
cram_read_container
[function]
[call site]
03593
cram_seek
[function]
[call site]
03594
cram_free_container
[function]
[call site]
03595
cram_read_container
[function]
[call site]
03596
cram_read_block
[function]
[call site]
03597
cram_decode_compression_header
[function]
[call site]
03598
calloc
[call site]
03599
cram_uncompress_block
[function]
[call site]
03600
kh_init_map
[function]
[call site]
03601
cram_free_compression_header
[function]
[call site]
03602
cram_free_compression_header
[function]
[call site]
03603
kh_put_map
[function]
[call site]
03604
cram_free_compression_header
[function]
[call site]
03605
kh_put_map
[function]
[call site]
03606
cram_free_compression_header
[function]
[call site]
03607
kh_put_map
[function]
[call site]
03608
cram_free_compression_header
[function]
[call site]
03609
kh_put_map
[function]
[call site]
03610
cram_free_compression_header
[function]
[call site]
03611
cram_free_compression_header
[function]
[call site]
03612
kh_put_map
[function]
[call site]
03613
cram_free_compression_header
[function]
[call site]
03614
cram_decode_TD
[function]
[call site]
03615
cram_new_block
[function]
[call site]
03616
hts_log
[function]
[call site]
03617
cram_free_block
[function]
[call site]
03618
cram_free_block
[function]
[call site]
03619
cram_free_block
[function]
[call site]
03620
block_append
[function]
[call site]
03621
block_append_char
[function]
[call site]
03622
calloc
[call site]
03623
cram_free_block
[function]
[call site]
03624
cram_free_block
[function]
[call site]
03625
cram_free_compression_header
[function]
[call site]
03626
kh_put_map
[function]
[call site]
03627
cram_free_compression_header
[function]
[call site]
03628
hts_log
[function]
[call site]
03629
cram_free_compression_header
[function]
[call site]
03630
cram_free_compression_header
[function]
[call site]
03631
cram_free_compression_header
[function]
[call site]
03632
hts_log
[function]
[call site]
03633
hts_log
[function]
[call site]
03634
cram_decoder_init
[function]
[call site]
03635
cram_encoding2str
[function]
[call site]
03636
hts_log
[function]
[call site]
03637
cram_free_compression_header
[function]
[call site]
03638
cram_free_compression_header
[function]
[call site]
03639
cram_free_compression_header
[function]
[call site]
03640
cram_free_compression_header
[function]
[call site]
03641
cram_decoder_init
[function]
[call site]
03642
cram_free_compression_header
[function]
[call site]
03643
cram_free_compression_header
[function]
[call site]
03644
sam_hrecs_sort_order
[function]
[call site]
03645
TYPEKEY
[function]
[call site]
03646
kh_get_sam_hrecs_t
[function]
[call site]
03647
strcmp
[call site]
03648
strcmp
[call site]
03649
strcmp
[call site]
03650
strcmp
[call site]
03651
hts_log
[function]
[call site]
03652
pthread_mutex_lock
[call site]
03653
pthread_mutex_unlock
[call site]
03654
cram_free_slice
[function]
[call site]
03655
cram_free_container
[function]
[call site]
03656
cram_read_container
[function]
[call site]
03657
cram_free_container
[function]
[call site]
03658
cram_free_container
[function]
[call site]
03659
cram_free_container
[function]
[call site]
03660
cram_seek
[function]
[call site]
03661
cram_free_container
[function]
[call site]
03662
cram_read_block
[function]
[call site]
03663
cram_decode_compression_header
[function]
[call site]
03664
sam_hrecs_sort_order
[function]
[call site]
03665
pthread_mutex_lock
[call site]
03666
pthread_mutex_unlock
[call site]
03667
cram_free_container
[function]
[call site]
03668
cram_read_slice
[function]
[call site]
03669
cram_read_block
[function]
[call site]
03670
calloc
[call site]
03671
cram_decode_slice_header
[function]
[call site]
03672
cram_uncompress_block
[function]
[call site]
03673
calloc
[call site]
03674
hts_log
[function]
[call site]
03675
cram_content_type2str
[function]
[call site]
03676
hts_log
[function]
[call site]
03677
hts_log
[function]
[call site]
03678
calloc
[call site]
03679
cram_read_block
[function]
[call site]
03680
calloc
[call site]
03681
cram_new_block
[function]
[call site]
03682
cram_new_block
[function]
[call site]
03683
cram_new_block
[function]
[call site]
03684
cram_new_block
[function]
[call site]
03685
cram_new_block
[function]
[call site]
03686
cram_new_block
[function]
[call site]
03687
cram_free_block
[function]
[call site]
03688
cram_free_slice
[function]
[call site]
03689
cram_free_slice
[function]
[call site]
03690
cram_free_slice
[function]
[call site]
03691
cram_free_slice
[function]
[call site]
03692
cram_decode_slice_mt
[function]
[call site]
03693
cram_decode_slice
[function]
[call site]
03694
hts_tpool_process_sz
[function]
[call site]
03695
pthread_mutex_lock
[call site]
03696
pthread_mutex_unlock
[call site]
03697
__errno_location
[call site]
03698
__errno_location
[call site]
03699
hts_tpool_dispatch2
[function]
[call site]
03700
cram_decode_slice_thread
[function]
[call site]
03701
cram_decode_slice
[function]
[call site]
03702
__errno_location
[call site]
03703
__errno_location
[call site]
03704
hts_log
[function]
[call site]
03705
cram_free_slice
[function]
[call site]
03706
hts_tpool_process_len
[function]
[call site]
03707
pthread_mutex_lock
[call site]
03708
pthread_mutex_unlock
[call site]
03709
hts_tpool_process_qsize
[function]
[call site]
03710
hts_tpool_process_empty
[function]
[call site]
03711
hts_tpool_next_result_wait
[function]
[call site]
03712
hts_tpool_result_data
[function]
[call site]
03713
hts_log
[function]
[call site]
03714
hts_tpool_result_data
[function]
[call site]
03715
hts_log
[function]
[call site]
03716
hts_tpool_delete_result
[function]
[call site]
03717
hts_tpool_delete_result
[function]
[call site]
03718
cram_free_slice
[function]
[call site]
03719
cram_free_slice
[function]
[call site]
03720
cram_to_bam
[function]
[call site]
03721
strlen
[call site]
03722
append_uint64
[function]
[call site]
03723
append_uint32
[function]
[call site]
03724
append_uint32
[function]
[call site]
03725
append_sub32
[function]
[call site]
03726
append_uint32
[function]
[call site]
03727
append_sub32
[function]
[call site]
03728
append_uint64
[function]
[call site]
03729
bam_set1
[function]
[call site]
03730
bam_cigar2rqlens
[function]
[call site]
03731
hts_log
[function]
[call site]
03732
__errno_location
[call site]
03733
hts_log
[function]
[call site]
03734
__errno_location
[call site]
03735
hts_log
[function]
[call site]
03736
__errno_location
[call site]
03737
hts_log
[function]
[call site]
03738
__errno_location
[call site]
03739
subtract_check_underflow
[function]
[call site]
03740
subtract_check_underflow
[function]
[call site]
03741
subtract_check_underflow
[function]
[call site]
03742
subtract_check_underflow
[function]
[call site]
03743
subtract_check_underflow
[function]
[call site]
03744
hts_log
[function]
[call site]
03745
__errno_location
[call site]
03746
realloc_bam_data
[function]
[call site]
03747
hts_reg2bin
[function]
[call site]
03748
strncpy
[call site]
03749
cram_eof
[function]
[call site]
03750
bam_tag2cigar
[function]
[call site]
03751
sam_read1_sam
[function]
[call site]
03752
sam_parse1
[function]
[call site]
03753
strchr
[call site]
03754
hts_log
[function]
[call site]
03755
hts_log
[function]
[call site]
03756
possibly_expand_bam_data
[function]
[call site]
03757
parse_sam_flag
[function]
[call site]
03758
hts_str2uint
[function]
[call site]
03759
strtoul
[call site]
03760
strchr
[call site]
03761
strcmp
[call site]
03762
hts_log
[function]
[call site]
03763
bam_name2id
[function]
[call site]
03764
sam_hdr_name2tid
[function]
[call site]
03765
sam_hdr_fill_hrecs
[function]
[call site]
03766
kh_get_m_s2i
[function]
[call site]
03767
hts_log
[function]
[call site]
03768
hts_strprint
[function]
[call site]
03769
isprint_c
[function]
[call site]
03770
__ctype_b_loc
[call site]
03771
strcpy
[call site]
03772
snprintf
[call site]
03773
hts_log
[function]
[call site]
03774
hts_str2uint
[function]
[call site]
03775
hts_log
[function]
[call site]
03776
hts_str2uint
[function]
[call site]
03777
bam_parse_cigar
[function]
[call site]
03778
hts_log
[function]
[call site]
03779
read_ncigar
[function]
[call site]
03780
isdigit_c
[function]
[call site]
03781
hts_log
[function]
[call site]
03782
hts_log
[function]
[call site]
03783
possibly_expand_bam_data
[function]
[call site]
03784
hts_log
[function]
[call site]
03785
parse_cigar
[function]
[call site]
03786
hts_str2uint
[function]
[call site]
03787
hts_log
[function]
[call site]
03788
hts_log
[function]
[call site]
03789
hts_log
[function]
[call site]
03790
bam_cigar2rlen
[function]
[call site]
03791
hts_log
[function]
[call site]
03792
strchr
[call site]
03793
hts_log
[function]
[call site]
03794
hts_reg2bin
[function]
[call site]
03795
strchr
[call site]
03796
strcmp
[call site]
03797
strcmp
[call site]
03798
bam_name2id
[function]
[call site]
03799
hts_log
[function]
[call site]
03800
hts_strprint
[function]
[call site]
03801
hts_log
[function]
[call site]
03802
hts_str2uint
[function]
[call site]
03803
hts_log
[function]
[call site]
03804
hts_str2int
[function]
[call site]
03805
hts_log
[function]
[call site]
03806
strchr
[call site]
03807
strcmp
[call site]
03808
hts_log
[function]
[call site]
03809
bam_cigar2qlen
[function]
[call site]
03810
hts_log
[function]
[call site]
03811
possibly_expand_bam_data
[function]
[call site]
03812
possibly_expand_bam_data
[function]
[call site]
03813
hts_log
[function]
[call site]
03814
hts_log
[function]
[call site]
03815
aux_parse
[function]
[call site]
03816
hts_log
[function]
[call site]
03817
isspace_c
[function]
[call site]
03818
hts_log
[function]
[call site]
03819
isspace_c
[function]
[call site]
03820
isspace_c
[function]
[call site]
03821
kh_get_tag
[function]
[call site]
03822
possibly_expand_bam_data
[function]
[call site]
03823
isspace_c
[function]
[call site]
03824
hts_log
[function]
[call site]
03825
possibly_expand_bam_data
[function]
[call site]
03826
hts_str2int
[function]
[call site]
03827
i16_to_le
[function]
[call site]
03828
u16_to_le
[function]
[call site]
03829
i32_to_le
[function]
[call site]
03830
u32_to_le
[function]
[call site]
03831
hts_str2uint
[function]
[call site]
03832
u16_to_le
[function]
[call site]
03833
u32_to_le
[function]
[call site]
03834
strtod
[call site]
03835
float_to_le
[function]
[call site]
03836
u32_to_le
[function]
[call site]
03837
strtod
[call site]
03838
double_to_le
[function]
[call site]
03839
u64_to_le
[function]
[call site]
03840
strchr
[call site]
03841
strlen
[call site]
03842
isspace_c
[function]
[call site]
03843
hts_log
[function]
[call site]
03844
possibly_expand_bam_data
[function]
[call site]
03845
isspace_c
[function]
[call site]
03846
sam_parse_B_vals
[function]
[call site]
03847
sam_parse_B_vals_r
[function]
[call site]
03848
hts_log
[function]
[call site]
03849
aux_type2size
[function]
[call site]
03850
hts_log
[function]
[call site]
03851
possibly_expand_bam_data
[function]
[call site]
03852
hts_log
[function]
[call site]
03853
sam_parse_Bc_vals
[function]
[call site]
03854
grow_B_array
[function]
[call site]
03855
__errno_location
[call site]
03856
possibly_expand_bam_data
[function]
[call site]
03857
hts_log
[function]
[call site]
03858
hts_str2int
[function]
[call site]
03859
sam_parse_BC_vals
[function]
[call site]
03860
grow_B_array
[function]
[call site]
03861
hts_str2uint
[function]
[call site]
03862
sam_parse_Bs_vals
[function]
[call site]
03863
grow_B_array
[function]
[call site]
03864
hts_str2int
[function]
[call site]
03865
i16_to_le
[function]
[call site]
03866
sam_parse_BS_vals
[function]
[call site]
03867
grow_B_array
[function]
[call site]
03868
hts_str2uint
[function]
[call site]
03869
u16_to_le
[function]
[call site]
03870
sam_parse_Bi_vals
[function]
[call site]
03871
grow_B_array
[function]
[call site]
03872
hts_str2int
[function]
[call site]
03873
i32_to_le
[function]
[call site]
03874
sam_parse_BI_vals
[function]
[call site]
03875
grow_B_array
[function]
[call site]
03876
hts_str2uint
[function]
[call site]
03877
u32_to_le
[function]
[call site]
03878
sam_parse_Bf_vals
[function]
[call site]
03879
grow_B_array
[function]
[call site]
03880
strtod
[call site]
03881
float_to_le
[function]
[call site]
03882
hts_log
[function]
[call site]
03883
i32_to_le
[function]
[call site]
03884
hts_str2int
[function]
[call site]
03885
sam_parse_B_vals_r
[function]
[call site]
03886
sam_parse_B_vals_r
[function]
[call site]
03887
sam_parse_B_vals_r
[function]
[call site]
03888
sam_parse_B_vals_r
[function]
[call site]
03889
sam_parse_B_vals_r
[function]
[call site]
03890
sam_parse_B_vals_r
[function]
[call site]
03891
hts_log
[function]
[call site]
03892
isspace_c
[function]
[call site]
03893
hts_strprint
[function]
[call site]
03894
hts_log
[function]
[call site]
03895
isspace_c
[function]
[call site]
03896
hts_log
[function]
[call site]
03897
bam_tag2cigar
[function]
[call site]
03898
sam_state_destroy
[function]
[call site]
03899
__errno_location
[call site]
03900
bgzf_seek
[function]
[call site]
03901
bgzf_seek_common
[function]
[call site]
03902
sam_hdr_fill_hrecs
[function]
[call site]
03903
pthread_create
[call site]
03904
sam_dispatcher_read
[function]
[call site]
03905
ks_resize
[function]
[call site]
03906
pthread_mutex_lock
[call site]
03907
pthread_cond_signal
[call site]
03908
pthread_mutex_unlock
[call site]
03909
hts_tpool_process_shutdown
[function]
[call site]
03910
pthread_mutex_unlock
[call site]
03911
pthread_mutex_lock
[call site]
03912
pthread_mutex_unlock
[call site]
03913
calloc
[call site]
03914
realloc
[call site]
03915
bgzf_read
[function]
[call site]
03916
hread
[function]
[call site]
03917
__errno_location
[call site]
03918
sam_state_err
[function]
[call site]
03919
realloc
[call site]
03920
__assert_fail
[call site]
03921
__assert_fail
[call site]
03922
__assert_fail
[call site]
03923
ks_resize
[function]
[call site]
03924
hts_tpool_dispatch3
[function]
[call site]
03925
sam_parse_worker
[function]
[call site]
03926
pthread_mutex_unlock
[call site]
03927
calloc
[call site]
03928
calloc
[call site]
03929
sam_state_err
[function]
[call site]
03930
sam_state_err
[function]
[call site]
03931
realloc
[call site]
03932
sam_state_err
[function]
[call site]
03933
strchr
[call site]
03934
sam_parse1
[function]
[call site]
03935
__errno_location
[call site]
03936
sam_state_err
[function]
[call site]
03937
cleanup_sp_lines
[function]
[call site]
03938
__assert_fail
[call site]
03939
sam_free_sp_bams
[function]
[call site]
03940
pthread_mutex_lock
[call site]
03941
pthread_mutex_unlock
[call site]
03942
sam_free_sp_bams
[function]
[call site]
03943
cleanup_sp_lines
[function]
[call site]
03944
cleanup_sp_bams
[function]
[call site]
03945
sam_free_sp_bams
[function]
[call site]
03946
pthread_mutex_lock
[call site]
03947
pthread_mutex_unlock
[call site]
03948
pthread_mutex_unlock
[call site]
03949
hts_tpool_dispatch
[function]
[call site]
03950
sam_parse_eof
[function]
[call site]
03951
pthread_mutex_lock
[call site]
03952
pthread_cond_wait
[call site]
03953
pthread_cond_signal
[call site]
03954
pthread_mutex_unlock
[call site]
03955
hts_tpool_process_shutdown
[function]
[call site]
03956
pthread_mutex_unlock
[call site]
03957
pthread_mutex_lock
[call site]
03958
pthread_cond_signal
[call site]
03959
pthread_mutex_unlock
[call site]
03960
pthread_mutex_lock
[call site]
03961
pthread_mutex_unlock
[call site]
03962
__errno_location
[call site]
03963
sam_state_err
[function]
[call site]
03964
hts_tpool_process_shutdown
[function]
[call site]
03965
hts_log
[function]
[call site]
03966
__errno_location
[call site]
03967
pthread_mutex_lock
[call site]
03968
pthread_mutex_unlock
[call site]
03969
hts_tpool_next_result_wait
[function]
[call site]
03970
hts_tpool_result_data
[function]
[call site]
03971
hts_tpool_delete_result
[function]
[call site]
03972
pthread_mutex_lock
[call site]
03973
pthread_mutex_unlock
[call site]
03974
bam_copy1
[function]
[call site]
03975
realloc_bam_data
[function]
[call site]
03976
pthread_mutex_lock
[call site]
03977
pthread_mutex_unlock
[call site]
03978
hts_getline
[function]
[call site]
03979
sam_parse1
[function]
[call site]
03980
hts_log
[function]
[call site]
03981
fastq_state_init
[function]
[call site]
03982
fastq_parse1
[function]
[call site]
03983
hts_getline
[function]
[call site]
03984
strpbrk
[call site]
03985
isspace_c
[function]
[call site]
03986
isspace_c
[function]
[call site]
03987
hts_getline
[function]
[call site]
03988
kputsn
[function]
[call site]
03989
hts_getline
[function]
[call site]
03990
kputsn
[function]
[call site]
03991
isdigit_c
[function]
[call site]
03992
bam_set1
[function]
[call site]
03993
isdigit_c
[function]
[call site]
03994
strtol
[call site]
03995
isdigit_c
[function]
[call site]
03996
isspace_c
[function]
[call site]
03997
bam_aux_append
[function]
[call site]
03998
__assert_fail
[call site]
03999
realloc_bam_data
[function]
[call site]
04000
__errno_location
[call site]
04001
aux_parse
[function]
[call site]
04002
__errno_location
[call site]
04003
__errno_location
[call site]
04004
sam_passes_filter
[function]
[call site]
04005
hts_filter_eval2
[function]
[call site]
04006
ks_free
[function]
[call site]
04007
hts_filter_eval_
[function]
[call site]
04008
expression
[function]
[call site]
04009
and_expr
[function]
[call site]
04010
eq_expr
[function]
[call site]
04011
cmp_expr
[function]
[call site]
04012
bitor_expr
[function]
[call site]
04013
bitxor_expr
[function]
[call site]
04014
bitand_expr
[function]
[call site]
04015
add_expr
[function]
[call site]
04016
mul_expr
[function]
[call site]
04017
unary_expr
[function]
[call site]
04018
ws
[function]
[call site]
04019
simple_expr
[function]
[call site]
04020
ws
[function]
[call site]
04021
expression
[function]
[call site]
04022
ws
[function]
[call site]
04023
fprintf
[call site]
04024
hts_str2dbl
[function]
[call site]
04025
ks_clear
[function]
[call site]
04029
kputsn
[function]
[call site]
04030
func_expr
[function]
[call site]
04031
strncmp
[call site]
04032
expression
[function]
[call site]
04033
expr_func_avg
[function]
[call site]
04034
strncmp
[call site]
04035
expression
[function]
[call site]
04036
ws
[function]
[call site]
04037
expression
[function]
[call site]
04038
hts_expr_val_existsT
[function]
[call site]
04039
hts_expr_val_exists
[function]
[call site]
04040
hts_expr_val_free
[function]
[call site]
04041
ks_free
[function]
[call site]
04042
strncmp
[call site]
04043
expression
[function]
[call site]
04044
hts_expr_val_existsT
[function]
[call site]
04045
strncmp
[call site]
04046
expression
[function]
[call site]
04047
exp
[call site]
04048
hts_expr_val_undef
[function]
[call site]
04049
ks_clear
[function]
[call site]
04050
strncmp
[call site]
04051
expression
[function]
[call site]
04052
expr_func_length
[function]
[call site]
04053
strncmp
[call site]
04054
expression
[function]
[call site]
04055
log
[call site]
04056
hts_expr_val_undef
[function]
[call site]
04057
strncmp
[call site]
04058
expression
[function]
[call site]
04059
expr_func_min
[function]
[call site]
04060
strncmp
[call site]
04061
expression
[function]
[call site]
04062
expr_func_max
[function]
[call site]
04063
strncmp
[call site]
04064
expression
[function]
[call site]
04065
ws
[function]
[call site]
04066
expression
[function]
[call site]
04067
hts_expr_val_exists
[function]
[call site]
04068
hts_expr_val_undef
[function]
[call site]
04069
hts_expr_val_free
[function]
[call site]
04070
pow
[call site]
04071
hts_expr_val_free
[function]
[call site]
04072
hts_expr_val_undef
[function]
[call site]
04073
strncmp
[call site]
04074
expression
[function]
[call site]
04075
sqrt
[call site]
04076
hts_expr_val_undef
[function]
[call site]
04077
ws
[function]
[call site]
04078
fprintf
[call site]
04079
hts_expr_val_exists
[function]
[call site]
04080
hts_expr_val_undef
[function]
[call site]
04081
unary_expr
[function]
[call site]
04082
hts_expr_val_exists
[function]
[call site]
04083
unary_expr
[function]
[call site]
04084
hts_expr_val_exists
[function]
[call site]
04085
hts_expr_val_undef
[function]
[call site]
04086
hts_expr_val_exists
[function]
[call site]
04087
hts_expr_val_undef
[function]
[call site]
04088
simple_expr
[function]
[call site]
04089
ws
[function]
[call site]
04090
unary_expr
[function]
[call site]
04091
hts_expr_val_exists
[function]
[call site]
04092
hts_expr_val_undef
[function]
[call site]
04093
hts_expr_val_free
[function]
[call site]
04094
hts_expr_val_undef
[function]
[call site]
04095
hts_expr_val_exists
[function]
[call site]
04096
hts_expr_val_free
[function]
[call site]
04097
ws
[function]
[call site]
04098
mul_expr
[function]
[call site]
04099
hts_expr_val_exists
[function]
[call site]
04100
hts_expr_val_free
[function]
[call site]
04101
hts_expr_val_undef
[function]
[call site]
04102
hts_expr_val_free
[function]
[call site]
04103
ws
[function]
[call site]
04104
add_expr
[function]
[call site]
04105
hts_expr_val_exists
[function]
[call site]
04106
hts_expr_val_free
[function]
[call site]
04107
hts_expr_val_free
[function]
[call site]
04108
hts_expr_val_undef
[function]
[call site]
04109
ws
[function]
[call site]
04110
bitand_expr
[function]
[call site]
04111
hts_expr_val_exists
[function]
[call site]
04112
hts_expr_val_free
[function]
[call site]
04113
hts_expr_val_free
[function]
[call site]
04114
hts_expr_val_undef
[function]
[call site]
04115
ws
[function]
[call site]
04116
bitxor_expr
[function]
[call site]
04117
hts_expr_val_exists
[function]
[call site]
04118
hts_expr_val_free
[function]
[call site]
04119
hts_expr_val_free
[function]
[call site]
04120
hts_expr_val_undef
[function]
[call site]
04121
ws
[function]
[call site]
04122
cmp_expr
[function]
[call site]
04123
hts_expr_val_exists
[function]
[call site]
04124
hts_expr_val_undef
[function]
[call site]
04125
strcmp
[call site]
04126
cmp_expr
[function]
[call site]
04127
hts_expr_val_exists
[function]
[call site]
04128
hts_expr_val_undef
[function]
[call site]
04129
strcmp
[call site]
04130
cmp_expr
[function]
[call site]
04131
hts_expr_val_exists
[function]
[call site]
04132
hts_expr_val_undef
[function]
[call site]
04133
strcmp
[call site]
04134
cmp_expr
[function]
[call site]
04135
hts_expr_val_exists
[function]
[call site]
04136
hts_expr_val_undef
[function]
[call site]
04137
strcmp
[call site]
04138
hts_expr_val_exists
[function]
[call site]
04139
hts_expr_val_undef
[function]
[call site]
04140
hts_expr_val_free
[function]
[call site]
04141
ws
[function]
[call site]
04142
eq_expr
[function]
[call site]
04143
hts_expr_val_exists
[function]
[call site]
04144
hts_expr_val_undef
[function]
[call site]
04145
strcmp
[call site]
04146
eq_expr
[function]
[call site]
04147
hts_expr_val_exists
[function]
[call site]
04148
hts_expr_val_undef
[function]
[call site]
04149
strcmp
[call site]
04150
eq_expr
[function]
[call site]
04151
hts_expr_val_free
[function]
[call site]
04152
regcomp
[call site]
04153
regerror
[call site]
04154
fprintf
[call site]
04155
hts_expr_val_free
[function]
[call site]
04156
regexec
[call site]
04157
regfree
[call site]
04158
hts_expr_val_exists
[function]
[call site]
04159
hts_expr_val_undef
[function]
[call site]
04160
hts_expr_val_free
[function]
[call site]
04161
ws
[function]
[call site]
04162
eq_expr
[function]
[call site]
04163
hts_expr_val_existsT
[function]
[call site]
04164
hts_expr_val_undef
[function]
[call site]
04165
eq_expr
[function]
[call site]
04166
hts_expr_val_existsT
[function]
[call site]
04167
hts_expr_val_undef
[function]
[call site]
04168
hts_expr_val_existsT
[function]
[call site]
04169
hts_expr_val_undef
[function]
[call site]
04170
hts_expr_val_existsT
[function]
[call site]
04171
hts_expr_val_undef
[function]
[call site]
04172
hts_expr_val_free
[function]
[call site]
04173
ws
[function]
[call site]
04174
fprintf
[call site]
04175
hts_expr_val_exists
[function]
[call site]
04176
bam_sym_lookup
[function]
[call site]
04177
memcmp
[call site]
04178
ks_clear
[function]
[call site]
04179
kputw
[function]
[call site]
04180
kputc_
[function]
[call site]
04181
kputs
[function]
[call site]
04182
kputs
[function]
[call site]
04183
memcmp
[call site]
04184
bam_endpos
[function]
[call site]
04185
memcmp
[call site]
04186
memcmp
[call site]
04187
memcmp
[call site]
04188
memcmp
[call site]
04189
memcmp
[call site]
04190
memcmp
[call site]
04191
memcmp
[call site]
04192
memcmp
[call site]
04193
memcmp
[call site]
04194
memcmp
[call site]
04195
memcmp
[call site]
04196
memcmp
[call site]
04197
memcmp
[call site]
04198
memcmp
[call site]
04199
memcmp
[call site]
04200
bam_get_library
[function]
[call site]
04201
bam_aux_get
[function]
[call site]
04202
sam_hdr_find_tag_id
[function]
[call site]
04203
ks_clear
[function]
[call site]
04204
kputs
[function]
[call site]
04205
memcmp
[call site]
04206
memcmp
[call site]
04207
memcmp
[call site]
04208
sam_hdr_tid2name
[function]
[call site]
04209
ks_clear
[function]
[call site]
04210
kputs
[function]
[call site]
04211
memcmp
[call site]
04212
memcmp
[call site]
04213
memcmp
[call site]
04214
memcmp
[call site]
04215
memcmp
[call site]
04216
bam_cigar2qlen
[function]
[call site]
04217
memcmp
[call site]
04218
ks_clear
[function]
[call site]
04219
kputs
[function]
[call site]
04220
memcmp
[call site]
04221
ks_clear
[function]
[call site]
04222
ks_resize
[function]
[call site]
04223
memcmp
[call site]
04224
bam_cigar2rlen
[function]
[call site]
04225
memcmp
[call site]
04226
sam_hdr_tid2name
[function]
[call site]
04227
ks_clear
[function]
[call site]
04228
kputs
[function]
[call site]
04229
memcmp
[call site]
04230
sam_hdr_tid2name
[function]
[call site]
04231
ks_clear
[function]
[call site]
04232
kputs
[function]
[call site]
04233
memcmp
[call site]
04234
memcmp
[call site]
04235
ks_clear
[function]
[call site]
04236
ks_resize
[function]
[call site]
04237
nibble2base
[function]
[call site]
04238
memcmp
[call site]
04239
memcmp
[call site]
04240
bam_aux_get
[function]
[call site]
04241
ks_clear
[function]
[call site]
04242
kputs
[function]
[call site]
04243
ks_clear
[function]
[call site]
04244
kputsn
[function]
[call site]
04245
bam_aux2i
[function]
[call site]
04246
get_int_aux_val
[function]
[call site]
04247
le_to_i8
[function]
[call site]
04248
le_to_i16
[function]
[call site]
04249
le_to_u16
[function]
[call site]
04250
le_to_i32
[function]
[call site]
04251
le_to_u32
[function]
[call site]
04252
__errno_location
[call site]
04253
bam_aux2f
[function]
[call site]
04254
le_to_double
[function]
[call site]
04255
le_to_float
[function]
[call site]
04256
get_int_aux_val
[function]
[call site]
04257
hts_log
[function]
[call site]
04258
hts_log
[function]
[call site]
04259
hts_expr_val_free
[function]
[call site]
04260
hts_expr_val_free
[function]
[call site]
04261
sam_write1
[function]
[call site]
04262
bam_write_idx1
[function]
[call site]
04263
bam_write1
[function]
[call site]
04264
hts_log
[function]
[call site]
04265
__errno_location
[call site]
04266
hts_log
[function]
[call site]
04267
bgzf_flush_try
[function]
[call site]
04268
lazy_flush
[function]
[call site]
04269
ed_swap_4p
[function]
[call site]
04270
ed_swap_4p
[function]
[call site]
04271
bgzf_write_small
[function]
[call site]
04272
bgzf_write
[function]
[call site]
04273
swap_data
[function]
[call site]
04274
bgzf_write_small
[function]
[call site]
04275
bgzf_write_small
[function]
[call site]
04276
bgzf_write_small
[function]
[call site]
04277
bgzf_write_small
[function]
[call site]
04278
bam_cigar2rlen
[function]
[call site]
04279
hts_log
[function]
[call site]
04280
u32_to_le
[function]
[call site]
04281
u32_to_le
[function]
[call site]
04282
bgzf_write_small
[function]
[call site]
04283
bgzf_write_small
[function]
[call site]
04284
bgzf_write_small
[function]
[call site]
04285
u32_to_le
[function]
[call site]
04286
bgzf_write_small
[function]
[call site]
04287
bgzf_write_small
[function]
[call site]
04288
swap_data
[function]
[call site]
04289
bgzf_flush_try
[function]
[call site]
04290
hts_idx_amend_last
[function]
[call site]
04291
bam_write1
[function]
[call site]
04292
bam_endpos
[function]
[call site]
04293
bgzf_idx_push
[function]
[call site]
04294
hts_idx_push
[function]
[call site]
04295
hts_idx_check_range
[function]
[call site]
04296
hts_idx_maxpos
[function]
[call site]
04297
hts_bin_maxpos
[function]
[call site]
04298
idx_format_name
[function]
[call site]
04299
hts_log
[function]
[call site]
04300
__errno_location
[call site]
04301
realloc
[call site]
04302
realloc
[call site]
04303
hts_log
[function]
[call site]
04304
hts_log
[function]
[call site]
04305
hts_log
[function]
[call site]
04306
hts_log
[function]
[call site]
04307
kh_init_bin
[function]
[call site]
04308
calloc
[call site]
04309
insert_to_l
[function]
[call site]
04310
realloc
[call site]
04311
hts_reg2bin
[function]
[call site]
04312
insert_to_b
[function]
[call site]
04313
kh_put_bin
[function]
[call site]
04314
kh_resize_bin
[function]
[call site]
04315
realloc
[call site]
04316
calloc
[call site]
04317
kh_del_bin
[function]
[call site]
04318
realloc
[call site]
04319
insert_to_b
[function]
[call site]
04320
insert_to_b
[function]
[call site]
04321
hts_idx_check_range
[function]
[call site]
04322
realloc
[call site]
04323
pthread_mutex_unlock
[call site]
04324
pthread_mutex_unlock
[call site]
04325
sam_hdr_tid2name
[function]
[call site]
04326
sam_hdr_tid2len
[function]
[call site]
04327
kh_get_s2i
[function]
[call site]
04328
hts_log
[function]
[call site]
04329
cram_put_bam_seq
[function]
[call site]
04330
cram_new_container
[function]
[call site]
04331
pthread_mutex_lock
[call site]
04332
pthread_mutex_unlock
[call site]
04333
hts_log
[function]
[call site]
04334
pthread_mutex_lock
[call site]
04335
hts_log
[function]
[call site]
04336
pthread_mutex_unlock
[call site]
04337
cram_next_container
[function]
[call site]
04338
cram_update_curr_slice
[function]
[call site]
04339
hts_log
[function]
[call site]
04340
cram_flush_container_mt
[function]
[call site]
04341
cram_free_slice
[function]
[call site]
04342
cram_free_container
[function]
[call site]
04343
cram_new_container
[function]
[call site]
04344
pthread_mutex_lock
[call site]
04345
pthread_mutex_unlock
[call site]
04346
cram_new_slice
[function]
[call site]
04347
calloc
[call site]
04348
calloc
[call site]
04349
cram_new_block
[function]
[call site]
04350
cram_new_block
[function]
[call site]
04351
cram_new_block
[function]
[call site]
04352
cram_new_block
[function]
[call site]
04353
cram_new_block
[function]
[call site]
04354
cram_new_block
[function]
[call site]
04355
string_pool_create
[function]
[call site]
04356
kh_init_m_s2i
[function]
[call site]
04357
kh_init_m_s2i
[function]
[call site]
04358
cram_free_slice
[function]
[call site]
04359
pthread_mutex_lock
[call site]
04360
hts_log
[function]
[call site]
04361
pthread_mutex_unlock
[call site]
04362
pthread_mutex_lock
[call site]
04363
calloc
[call site]
04364
pthread_mutex_unlock
[call site]
04365
pthread_mutex_lock
[call site]
04366
calloc
[call site]
04367
pthread_mutex_unlock
[call site]
04368
pthread_mutex_lock
[call site]
04369
pthread_mutex_unlock
[call site]
04370
pthread_mutex_lock
[call site]
04371
calloc
[call site]
04372
pthread_mutex_unlock
[call site]
04373
pthread_mutex_unlock
[call site]
04374
bam_copy1
[function]
[call site]
04375
bam_dup1
[function]
[call site]
04376
bam_init1
[function]
[call site]
04377
bam_copy1
[function]
[call site]
04378
bam_destroy1
[function]
[call site]
04379
bam_cigar2qlen
[function]
[call site]
04380
hts_log
[function]
[call site]
04381
pthread_create
[call site]
04382
sam_dispatcher_write
[function]
[call site]
04383
hts_tpool_next_result_wait
[function]
[call site]
04384
hts_tpool_result_data
[function]
[call site]
04385
sam_state_err
[function]
[call site]
04386
bgzf_flush_try
[function]
[call site]
04387
bgzf_write
[function]
[call site]
04388
hwrite
[function]
[call site]
04389
bam_endpos
[function]
[call site]
04390
bgzf_idx_push
[function]
[call site]
04391
__errno_location
[call site]
04392
sam_state_err
[function]
[call site]
04393
sam_hdr_tid2name
[function]
[call site]
04394
sam_hdr_tid2len
[function]
[call site]
04395
hts_log
[function]
[call site]
04396
bam_endpos
[function]
[call site]
04397
hts_idx_push
[function]
[call site]
04398
__errno_location
[call site]
04399
sam_state_err
[function]
[call site]
04400
sam_hdr_tid2name
[function]
[call site]
04401
sam_hdr_tid2len
[function]
[call site]
04402
hts_log
[function]
[call site]
04403
__assert_fail
[call site]
04404
pthread_mutex_lock
[call site]
04405
pthread_mutex_unlock
[call site]
04406
bgzf_write
[function]
[call site]
04407
bgzf_flush_try
[function]
[call site]
04408
bgzf_write
[function]
[call site]
04409
hwrite
[function]
[call site]
04410
hts_tpool_delete_result
[function]
[call site]
04411
pthread_mutex_lock
[call site]
04412
pthread_mutex_unlock
[call site]
04413
sam_state_err
[function]
[call site]
04414
hts_tpool_process_shutdown
[function]
[call site]
04415
__errno_location
[call site]
04416
sam_state_err
[function]
[call site]
04417
hts_log
[function]
[call site]
04418
pthread_mutex_lock
[call site]
04419
pthread_mutex_unlock
[call site]
04420
pthread_mutex_unlock
[call site]
04421
calloc
[call site]
04422
calloc
[call site]
04423
bam_copy1
[function]
[call site]
04424
pthread_mutex_lock
[call site]
04425
pthread_mutex_unlock
[call site]
04426
hts_tpool_dispatch3
[function]
[call site]
04427
sam_format_worker
[function]
[call site]
04428
cleanup_sp_bams
[function]
[call site]
04429
cleanup_sp_lines
[function]
[call site]
04430
pthread_mutex_unlock
[call site]
04431
pthread_mutex_unlock
[call site]
04432
sam_format1
[function]
[call site]
04433
sam_format1_append
[function]
[call site]
04434
kputc
[function]
[call site]
04435
bgzf_flush_try
[function]
[call site]
04436
bgzf_write
[function]
[call site]
04437
hwrite
[function]
[call site]
04438
bam_endpos
[function]
[call site]
04439
bgzf_idx_push
[function]
[call site]
04440
sam_hdr_tid2name
[function]
[call site]
04441
sam_hdr_tid2len
[function]
[call site]
04442
hts_log
[function]
[call site]
04443
bam_endpos
[function]
[call site]
04444
hts_idx_push
[function]
[call site]
04445
sam_hdr_tid2name
[function]
[call site]
04446
sam_hdr_tid2len
[function]
[call site]
04447
hts_log
[function]
[call site]
04448
fastq_state_init
[function]
[call site]
04449
fastq_format1
[function]
[call site]
04450
kputc
[function]
[call site]
04451
kputs
[function]
[call site]
04452
kputs
[function]
[call site]
04453
kputs
[function]
[call site]
04454
bam_aux_get
[function]
[call site]
04455
ksprintf
[function]
[call site]
04456
isupper_c
[function]
[call site]
04457
__ctype_b_loc
[call site]
04458
islower_c
[function]
[call site]
04459
__ctype_b_loc
[call site]
04460
hts_log
[function]
[call site]
04461
strlen
[call site]
04462
strlen
[call site]
04463
isalpha_c
[function]
[call site]
04464
islower_c
[function]
[call site]
04465
toupper_c
[function]
[call site]
04466
kh_get_tag
[function]
[call site]
04467
kputc_
[function]
[call site]
04468
sam_format_aux1
[function]
[call site]
04469
skip_aux
[function]
[call site]
04470
kputsn
[function]
[call site]
04471
ks_resize
[function]
[call site]
04472
kputc_
[function]
[call site]
04473
kputc_
[function]
[call site]
04474
kputc_
[function]
[call site]
04475
kputsn
[function]
[call site]
04476
kputc_
[function]
[call site]
04477
kputc_
[function]
[call site]
04478
kputc_
[function]
[call site]
04479
kputc
[function]
[call site]
04480
bgzf_flush_try
[function]
[call site]
04481
bgzf_write
[function]
[call site]
04482
hwrite
[function]
[call site]
04483
__errno_location
[call site]
04484
bam_destroy1
[function]
[call site]
04485
sam_hdr_destroy
[function]
[call site]
04486
hts_close_or_abort
[function]
[call site]
04487
hts_close
[function]
[call site]
04488
hts_close
[function]
[call site]
04489
view_sam
[function]
[call site]
04490
view_sam
[function]
[call site]
04491
view_vcf
[function]
[call site]
04492
abort
[call site]
04493
hopen
[function]
[call site]
04494
hts_hopen
[function]
[call site]
04495
hclose
[function]
[call site]
04496
abort
[call site]
04497
hts_open
[function]
[call site]
04498
abort
[call site]
04499
bcf_hdr_read
[function]
[call site]
04500
vcf_hdr_read
[function]
[call site]
04501
bcf_hdr_init
[function]
[call site]
04502
calloc
[call site]
04503
kh_init_vdict
[function]
[call site]
04504
calloc
[call site]
04505
kh_resize_vdict
[function]
[call site]
04506
realloc
[call site]
04507
__ac_FNV1a_hash_string
[function]
[call site]
04508
calloc
[call site]
04509
kh_init_hdict
[function]
[call site]
04510
calloc
[call site]
04511
strchr
[call site]
04512
bcf_hdr_append
[function]
[call site]
04513
bcf_hdr_parse_line
[function]
[call site]
04514
calloc
[call site]
04515
isalpha_c
[function]
[call site]
04516
isalnum_c
[function]
[call site]
04517
bcf_hrec_add_key
[function]
[call site]
04518
is_escaped
[function]
[call site]
04522
hts_strprint
[function]
[call site]
04523
hts_log
[function]
[call site]
04524
bcf_hrec_set_val
[function]
[call site]
04525
__errno_location
[call site]
04526
__errno_location
[call site]
04527
hts_log
[function]
[call site]
04528
isspace_c
[function]
[call site]
04529
hts_strprint
[function]
[call site]
04530
hts_log
[function]
[call site]
04531
bcf_hrec_destroy
[function]
[call site]
04532
hts_strprint
[function]
[call site]
04533
hts_log
[function]
[call site]
04534
bcf_hrec_destroy
[function]
[call site]
04535
bcf_hdr_add_hrec
[function]
[call site]
04536
get_hdr_aux
[function]
[call site]
04537
bcf_hrec_check
[function]
[call site]
04538
bcf_hrec_set_type
[function]
[call site]
04539
strcmp
[call site]
04540
strcmp
[call site]
04541
strcmp
[call site]
04542
strcmp
[call site]
04543
bcf_hrec_find_key
[function]
[call site]
04544
strcasecmp
[call site]
04545
bcf_hrec_find_key
[function]
[call site]
04546
strcmp
[call site]
04547
bcf_hrec_find_key
[function]
[call site]
04548
hts_log
[function]
[call site]
04549
hts_log
[function]
[call site]
04550
hts_log
[function]
[call site]
04551
bcf_hdr_register_hrec
[function]
[call site]
04552
bcf_hrec_set_type
[function]
[call site]
04553
bcf_hrec_find_key
[function]
[call site]
04554
strtoll
[call site]
04555
bcf_hrec_find_key
[function]
[call site]
04556
strdup
[call site]
04557
kh_get_vdict
[function]
[call site]
04558
strcmp
[call site]
04559
kh_put_vdict
[function]
[call site]
04560
kh_resize_vdict
[function]
[call site]
04561
bcf_hrec_find_key
[function]
[call site]
04562
strtol
[call site]
04563
kh_del_vdict
[function]
[call site]
04564
bcf_hdr_set_idx
[function]
[call site]
04565
__errno_location
[call site]
04566
hts_resize_array_
[function]
[call site]
04567
hts_log
[function]
[call site]
04568
__errno_location
[call site]
04569
realloc
[call site]
04570
__errno_location
[call site]
04571
__errno_location
[call site]
04572
strerror
[call site]
04573
hts_log
[function]
[call site]
04574
__errno_location
[call site]
04575
abort
[call site]
04576
abort
[call site]
04577
kh_del_vdict
[function]
[call site]
04578
hrec_add_idx
[function]
[call site]
04579
realloc
[call site]
04580
realloc
[call site]
04581
strdup
[call site]
04582
kputw
[function]
[call site]
04583
strcmp
[call site]
04584
strcmp
[call site]
04585
strtol
[call site]
04586
hts_log
[function]
[call site]
04587
strcmp
[call site]
04588
strcmp
[call site]
04589
strcmp
[call site]
04590
strcmp
[call site]
04591
strcmp
[call site]
04592
strcmp
[call site]
04593
hts_log
[function]
[call site]
04594
strcmp
[call site]
04595
strcmp
[call site]
04596
strcmp
[call site]
04597
strcmp
[call site]
04598
strcmp
[call site]
04599
__isoc99_sscanf
[call site]
04600
hts_log
[function]
[call site]
04601
hts_log
[function]
[call site]
04602
hts_log
[function]
[call site]
04603
strdup
[call site]
04604
kh_get_vdict
[function]
[call site]
04605
hrec_add_idx
[function]
[call site]
04606
kh_put_vdict
[function]
[call site]
04607
bcf_hdr_set_idx
[function]
[call site]
04608
kh_del_vdict
[function]
[call site]
04609
hrec_add_idx
[function]
[call site]
04610
bcf_hrec_destroy
[function]
[call site]
04611
ksprintf
[function]
[call site]
04612
kh_get_hdict
[function]
[call site]
04613
__ac_FNV1a_hash_string
[function]
[call site]
04614
strcmp
[call site]
04615
bcf_hrec_destroy
[function]
[call site]
04616
strcmp
[call site]
04617
bcf_get_version
[function]
[call site]
04618
get_hdr_aux
[function]
[call site]
04619
bcf_hdr_get_version
[function]
[call site]
04620
bcf_hdr_get_hrec
[function]
[call site]
04621
ksprintf
[function]
[call site]
04622
get_hdr_aux
[function]
[call site]
04623
kh_get_hdict
[function]
[call site]
04624
strcmp
[call site]
04625
ksprintf
[function]
[call site]
04626
get_hdr_aux
[function]
[call site]
04627
kh_get_hdict
[function]
[call site]
04628
strcmp
[call site]
04629
bcf_hrec_find_key
[function]
[call site]
04630
strcmp
[call site]
04631
kh_get_vdict
[function]
[call site]
04632
hts_log
[function]
[call site]
04633
strstr
[call site]
04634
strchr
[call site]
04635
strtol
[call site]
04636
__errno_location
[call site]
04637
__errno_location
[call site]
04638
strtol
[call site]
04639
__errno_location
[call site]
04640
hts_log
[function]
[call site]
04641
bcf_hrec_find_key
[function]
[call site]
04642
ksprintf
[function]
[call site]
04643
kh_get_hdict
[function]
[call site]
04644
bcf_hrec_destroy
[function]
[call site]
04645
realloc
[call site]
04646
bcf_hdr_unregister_hrec
[function]
[call site]
04647
bcf_hrec_find_key
[function]
[call site]
04648
kh_get_vdict
[function]
[call site]
04649
kh_put_hdict
[function]
[call site]
04650
kh_resize_hdict
[function]
[call site]
04651
realloc
[call site]
04652
bcf_hdr_append
[function]
[call site]
04653
kh_destroy_vdict
[function]
[call site]
04654
hts_log
[function]
[call site]
04655
hts_getline
[function]
[call site]
04656
hts_log
[function]
[call site]
04657
hopen
[function]
[call site]
04658
hts_log
[function]
[call site]
04659
kgetline
[function]
[call site]
04660
hgets
[function]
[call site]
04661
strchr
[call site]
04662
kputs
[function]
[call site]
04663
kputsn
[function]
[call site]
04664
kputs
[function]
[call site]
04665
atol
[call site]
04666
kputl
[function]
[call site]
04667
kputll
[function]
[call site]
04668
kputsn
[function]
[call site]
04669
hclose
[function]
[call site]
04670
hts_log
[function]
[call site]
04671
kputsn
[function]
[call site]
04672
kputc
[function]
[call site]
04673
hts_log
[function]
[call site]
04674
bcf_hdr_parse
[function]
[call site]
04675
bcf_hdr_parse_line
[function]
[call site]
04676
strcasecmp
[call site]
04677
hts_log
[function]
[call site]
04678
bcf_hdr_add_hrec
[function]
[call site]
04679
bcf_hrec_destroy
[function]
[call site]
04680
bcf_hdr_parse_line
[function]
[call site]
04681
bcf_hdr_add_hrec
[function]
[call site]
04682
bcf_hrec_destroy
[function]
[call site]
04683
bcf_hdr_parse_line
[function]
[call site]
04684
bcf_hdr_add_hrec
[function]
[call site]
04685
bcf_hrec_destroy
[function]
[call site]
04686
__assert_fail
[call site]
04687
__errno_location
[call site]
04688
strerror
[call site]
04689
hts_log
[function]
[call site]
04690
strncmp
[call site]
04691
strchr
[call site]
04692
hts_strprint
[function]
[call site]
04693
hts_log
[function]
[call site]
04694
hts_log
[function]
[call site]
04695
bcf_hdr_parse_sample_line
[function]
[call site]
04696
strlen
[call site]
04697
strncmp
[call site]
04698
hts_log
[function]
[call site]
04699
strlen
[call site]
04700
strncmp
[call site]
04701
bcf_hdr_add_sample_len
[function]
[call site]
04702
isspace_c
[function]
[call site]
04703
hts_log
[function]
[call site]
04704
realloc
[call site]
04705
kh_put_vdict
[function]
[call site]
04706
hts_log
[function]
[call site]
04707
bcf_hdr_sync
[function]
[call site]
04708
realloc
[call site]
04709
get_hdr_aux
[function]
[call site]
04710
bcf_hdr_check_sanity
[function]
[call site]
04711
bcf_hdr_id2int
[function]
[call site]
04712
kh_get_vdict
[function]
[call site]
04713
hts_log
[function]
[call site]
04714
bcf_hdr_id2int
[function]
[call site]
04715
tbx_index_load3
[function]
[call site]
04716
index_load
[function]
[call site]
04717
calloc
[call site]
04718
hts_idx_load3
[function]
[call site]
04719
idx_find_and_load
[function]
[call site]
04720
strstr
[call site]
04721
strdup
[call site]
04722
__errno_location
[call site]
04723
strerror
[call site]
04724
hts_log
[function]
[call site]
04725
hts_idx_load3
[function]
[call site]
04726
hisremote
[function]
[call site]
04727
stat
[call site]
04728
hts_log
[function]
[call site]
04729
idx_test_and_fetch
[function]
[call site]
04730
hisremote
[function]
[call site]
04731
strncmp
[call site]
04732
strcspn
[call site]
04733
access
[call site]
04734
hopen
[function]
[call site]
04735
hts_log
[function]
[call site]
04736
hts_detect_format2
[function]
[call site]
04737
hts_log
[function]
[call site]
04738
hts_log
[function]
[call site]
04739
hts_open_tmpfile
[function]
[call site]
04740
hts_log
[function]
[call site]
04741
hts_log
[function]
[call site]
04742
calloc
[call site]
04743
__errno_location
[call site]
04744
strerror
[call site]
04745
hts_log
[function]
[call site]
04746
hread
[function]
[call site]
04747
hwrite
[function]
[call site]
04748
__errno_location
[call site]
04749
strerror
[call site]
04750
hts_log
[function]
[call site]
04751
hts_log
[function]
[call site]
04752
hclose
[function]
[call site]
04753
__errno_location
[call site]
04754
strerror
[call site]
04755
hts_log
[function]
[call site]
04756
rename
[call site]
04757
__errno_location
[call site]
04758
strerror
[call site]
04759
hts_log
[function]
[call site]
04760
ks_clear
[function]
[call site]
04761
hclose
[function]
[call site]
04762
hts_log
[function]
[call site]
04763
hopen
[function]
[call site]
04764
hclose_abruptly
[function]
[call site]
04765
strlen
[call site]
04766
__errno_location
[call site]
04767
hclose_abruptly
[function]
[call site]
04768
hclose_abruptly
[function]
[call site]
04769
unlink
[call site]
04770
__errno_location
[call site]
04771
strdup
[call site]
04772
idx_read
[function]
[call site]
04773
bgzf_open
[function]
[call site]
04774
ed_is_big
[function]
[call site]
04775
bgzf_read
[function]
[call site]
04776
memcmp
[call site]
04777
bgzf_read
[function]
[call site]
04778
ed_swap_4p
[function]
[call site]
04779
bgzf_read
[function]
[call site]
04780
bgzf_read
[function]
[call site]
04781
ed_swap_4p
[function]
[call site]
04782
hts_idx_init
[function]
[call site]
04783
calloc
[call site]
04784
calloc
[call site]
04785
idx_read_core
[function]
[call site]
04786
ed_is_big
[function]
[call site]
04787
kh_init_bin
[function]
[call site]
04788
bgzf_read
[function]
[call site]
04789
ed_swap_4p
[function]
[call site]
04790
bgzf_read
[function]
[call site]
04791
ed_swap_4p
[function]
[call site]
04792
kh_put_bin
[function]
[call site]
04793
bgzf_read
[function]
[call site]
04794
ed_swap_8p
[function]
[call site]
04795
bgzf_read
[function]
[call site]
04796
ed_swap_4p
[function]
[call site]
04797
bgzf_read
[function]
[call site]
04798
swap_bins
[function]
[call site]
04799
ed_swap_8p
[function]
[call site]
04800
ed_swap_8p
[function]
[call site]
04801
bgzf_read
[function]
[call site]
04802
ed_swap_4p
[function]
[call site]
04803
bgzf_read
[function]
[call site]
04804
ed_swap_8p
[function]
[call site]
04805
update_loff
[function]
[call site]
04806
hts_bin_bot
[function]
[call site]
04807
hts_bin_level
[function]
[call site]
04808
bgzf_read
[function]
[call site]
04809
ed_swap_8p
[function]
[call site]
04810
memcmp
[call site]
04811
bgzf_read
[function]
[call site]
04812
le_to_u32
[function]
[call site]
04813
hts_idx_init
[function]
[call site]
04814
le_to_u32
[function]
[call site]
04815
bgzf_read
[function]
[call site]
04816
idx_read_core
[function]
[call site]
04817
memcmp
[call site]
04818
bgzf_read
[function]
[call site]
04819
ed_swap_4p
[function]
[call site]
04820
hts_idx_init
[function]
[call site]
04821
idx_read_core
[function]
[call site]
04822
__errno_location
[call site]
04823
bgzf_close
[function]
[call site]
04824
bgzf_close
[function]
[call site]
04825
hts_idx_destroy
[function]
[call site]
04826
__errno_location
[call site]
04827
strerror
[call site]
04828
hts_log
[function]
[call site]
04829
hts_idx_check_local
[function]
[call site]
04830
hisremote
[function]
[call site]
04831
strlen
[call site]
04832
strncmp
[call site]
04833
strncmp
[call site]
04834
hts_log
[function]
[call site]
04835
strlen
[call site]
04836
calloc
[call site]
04837
strcpy
[call site]
04838
stat
[call site]
04839
strcpy
[call site]
04840
stat
[call site]
04841
strcpy
[call site]
04842
stat
[call site]
04843
strcpy
[call site]
04844
stat
[call site]
04845
strcpy
[call site]
04846
stat
[call site]
04847
strcpy
[call site]
04848
stat
[call site]
04849
strcpy
[call site]
04850
stat
[call site]
04851
strcpy
[call site]
04852
stat
[call site]
04853
strcpy
[call site]
04854
strcmp
[call site]
04855
strcmp
[call site]
04856
strcpy
[call site]
04857
stat
[call site]
04858
strcpy
[call site]
04859
stat
[call site]
04860
hisremote
[function]
[call site]
04861
idx_filename
[function]
[call site]
04862
haddextension
[function]
[call site]
04863
find_scheme_handler
[function]
[call site]
04864
strncmp
[call site]
04865
strcspn
[call site]
04866
strchr
[call site]
04867
strip_extension
[function]
[call site]
04868
kputsn
[function]
[call site]
04869
kputs
[function]
[call site]
04870
kputs
[function]
[call site]
04871
idx_test_and_fetch
[function]
[call site]
04872
haddextension
[function]
[call site]
04873
idx_test_and_fetch
[function]
[call site]
04874
idx_filename
[function]
[call site]
04875
idx_filename
[function]
[call site]
04876
idx_filename
[function]
[call site]
04877
idx_filename
[function]
[call site]
04878
idx_filename
[function]
[call site]
04879
hts_log
[function]
[call site]
04880
hts_idx_load3
[function]
[call site]
04881
idx_read
[function]
[call site]
04882
hts_idx_get_meta
[function]
[call site]
04883
le_to_i32
[function]
[call site]
04884
le_to_i32
[function]
[call site]
04885
le_to_i32
[function]
[call site]
04886
le_to_i32
[function]
[call site]
04887
le_to_i32
[function]
[call site]
04888
le_to_i32
[function]
[call site]
04889
le_to_u32
[function]
[call site]
04890
get_tid
[function]
[call site]
04891
kh_init_s2i
[function]
[call site]
04892
kh_put_s2i
[function]
[call site]
04893
strdup
[call site]
04894
kh_del_s2i
[function]
[call site]
04895
kh_get_s2i
[function]
[call site]
04896
__errno_location
[call site]
04897
strerror
[call site]
04898
hts_log
[function]
[call site]
04899
strlen
[call site]
04900
hts_log
[function]
[call site]
04901
tbx_destroy
[function]
[call site]
04902
hts_idx_destroy
[function]
[call site]
04903
kh_destroy_s2i
[function]
[call site]
04904
tbx_seqnames
[function]
[call site]
04905
calloc
[call site]
04906
calloc
[call site]
04907
__assert_fail
[call site]
04908
__assert_fail
[call site]
04909
bcf_hdr_get_hrec
[function]
[call site]
04910
add_missing_contig_hrec
[function]
[call site]
04911
calloc
[call site]
04912
strdup
[call site]
04913
bcf_hrec_add_key
[function]
[call site]
04914
strlen
[call site]
04915
bcf_hrec_set_val
[function]
[call site]
04916
bcf_hdr_add_hrec
[function]
[call site]
04917
__errno_location
[call site]
04918
__errno_location
[call site]
04919
strerror
[call site]
04920
hts_log
[function]
[call site]
04921
bcf_hrec_destroy
[function]
[call site]
04922
__errno_location
[call site]
04923
bcf_hdr_sync
[function]
[call site]
04924
tbx_destroy
[function]
[call site]
04925
tbx_destroy
[function]
[call site]
04926
bcf_hdr_destroy
[function]
[call site]
04927
get_hdr_aux
[function]
[call site]
04928
kh_destroy_hdict
[function]
[call site]
04929
kh_destroy_vdict
[function]
[call site]
04930
bcf_hrec_destroy
[function]
[call site]
04931
hts_log
[function]
[call site]
04932
__assert_fail
[call site]
04933
bcf_hdr_init
[function]
[call site]
04934
hts_log
[function]
[call site]
04935
bgzf_read
[function]
[call site]
04936
hts_log
[function]
[call site]
04937
bcf_hdr_destroy
[function]
[call site]
04938
strncmp
[call site]
04939
strncmp
[call site]
04940
hts_log
[function]
[call site]
04941
hts_log
[function]
[call site]
04942
bcf_hdr_destroy
[function]
[call site]
04943
bgzf_read
[function]
[call site]
04944
__errno_location
[call site]
04945
__errno_location
[call site]
04946
bgzf_read
[function]
[call site]
04947
bcf_hdr_parse
[function]
[call site]
04948
hts_log
[function]
[call site]
04949
bcf_hdr_destroy
[function]
[call site]
04950
hts_close_or_abort
[function]
[call site]
04951
hts_close
[function]
[call site]
04952
bcf_hdr_write
[function]
[call site]
04953
__errno_location
[call site]
04954
bcf_hdr_sync
[function]
[call site]
04955
vcf_hdr_write
[function]
[call site]
04956
bcf_hdr_format
[function]
[call site]
04957
_bcf_hrec_format
[function]
[call site]
04958
ksprintf
[function]
[call site]
04959
strcmp
[call site]
04960
kputc
[function]
[call site]
04961
ksprintf
[function]
[call site]
04962
ksprintf
[function]
[call site]
04963
ksprintf
[function]
[call site]
04964
ksprintf
[function]
[call site]
04965
ksprintf
[function]
[call site]
04966
ksprintf
[function]
[call site]
04967
ksprintf
[function]
[call site]
04968
bgzf_write
[function]
[call site]
04969
bgzf_flush
[function]
[call site]
04970
hwrite
[function]
[call site]
04971
bcf_hdr_format
[function]
[call site]
04972
kputc
[function]
[call site]
04973
bgzf_write
[function]
[call site]
04974
u32_to_le
[function]
[call site]
04975
bgzf_write
[function]
[call site]
04976
bgzf_write
[function]
[call site]
04977
bgzf_flush
[function]
[call site]
04978
bcf_init
[function]
[call site]
04979
calloc
[call site]
04980
bcf_read
[function]
[call site]
04981
vcf_read
[function]
[call site]
04982
hts_getline
[function]
[call site]
04983
vcf_parse
[function]
[call site]
04984
ks_resize
[function]
[call site]
04985
bcf_clear
[function]
[call site]
04986
bcf_float_set
[function]
[call site]
04987
kstrtok
[function]
[call site]
04988
kh_get_vdict
[function]
[call site]
04989
hts_log
[function]
[call site]
04990
fix_chromosome
[function]
[call site]
04991
ksprintf
[function]
[call site]
04992
bcf_hdr_parse_line
[function]
[call site]
04993
bcf_hdr_add_hrec
[function]
[call site]
04994
bcf_hrec_destroy
[function]
[call site]
04995
bcf_hdr_sync
[function]
[call site]
04996
kh_get_vdict
[function]
[call site]
04997
hts_log
[function]
[call site]
04998
kstrtok
[function]
[call site]
04999
hts_str2uint
[function]
[call site]
05000
hts_log
[function]
[call site]
05001
hts_log
[function]
[call site]
05002
kstrtok
[function]
[call site]
05003
memcmp
[call site]
05004
bcf_enc_vchar
[function]
[call site]
05005
bcf_enc_size
[function]
[call site]
05006
ks_resize
[function]
[call site]
05007
ks_resize
[function]
[call site]
05008
i16_to_le
[function]
[call site]
05009
i32_to_le
[function]
[call site]
05010
kputsn
[function]
[call site]
05011
bcf_enc_size
[function]
[call site]
05012
kstrtok
[function]
[call site]
05013
bcf_enc_vchar
[function]
[call site]
05014
kstrtok
[function]
[call site]
05015
memcmp
[call site]
05016
bcf_seqname_safe
[function]
[call site]
05017
bcf_seqname
[function]
[call site]
05018
bcf_hdr_id2name
[function]
[call site]
05019
hts_log
[function]
[call site]
05020
bcf_enc_vchar
[function]
[call site]
05021
kstrtok
[function]
[call site]
05022
memcmp
[call site]
05023
atof
[call site]
05024
bcf_float_set
[function]
[call site]
05025
kstrtok
[function]
[call site]
05026
memcmp
[call site]
05027
vcf_parse_filter
[function]
[call site]
05028
bcf_seqname_safe
[function]
[call site]
05029
hts_log
[function]
[call site]
05030
kstrtok
[function]
[call site]
05031
kh_get_vdict
[function]
[call site]
05032
hts_log
[function]
[call site]
05033
ksprintf
[function]
[call site]
05034
bcf_hdr_parse_line
[function]
[call site]
05035
bcf_hdr_add_hrec
[function]
[call site]
05036
bcf_hrec_destroy
[function]
[call site]
05037
bcf_hdr_sync
[function]
[call site]
05038
kh_get_vdict
[function]
[call site]
05039
bcf_seqname_safe
[function]
[call site]
05040
hts_log
[function]
[call site]
05041
bcf_enc_vint
[function]
[call site]
05042
bcf_enc_size
[function]
[call site]
05043
bcf_enc_int1
[function]
[call site]
05044
ks_resize
[function]
[call site]
05045
i16_to_le
[function]
[call site]
05046
i32_to_le
[function]
[call site]
05047
bcf_enc_size
[function]
[call site]
05048
ks_resize
[function]
[call site]
05049
bcf_enc_size
[function]
[call site]
05050
ks_resize
[function]
[call site]
05051
i16_to_le
[function]
[call site]
05052
bcf_enc_size
[function]
[call site]
05053
ks_resize
[function]
[call site]
05054
i32_to_le
[function]
[call site]
05055
bcf_enc_vint
[function]
[call site]
05056
kstrtok
[function]
[call site]
05057
memcmp
[call site]
05058
vcf_parse_info
[function]
[call site]
05059
bcf_seqname_safe
[function]
[call site]
05060
hts_log
[function]
[call site]
05061
kh_get_vdict
[function]
[call site]
05062
hts_log
[function]
[call site]
05063
ksprintf
[function]
[call site]
05064
bcf_hdr_parse_line
[function]
[call site]
05065
bcf_hdr_add_hrec
[function]
[call site]
05066
bcf_hrec_destroy
[function]
[call site]
05067
bcf_hdr_sync
[function]
[call site]
05068
kh_get_vdict
[function]
[call site]
05069
bcf_seqname_safe
[function]
[call site]
05070
hts_log
[function]
[call site]
05071
bcf_enc_int1
[function]
[call site]
05072
bcf_enc_size
[function]
[call site]
05073
bcf_enc_vchar
[function]
[call site]
05074
realloc
[call site]
05075
bcf_seqname_safe
[function]
[call site]
05076
hts_log
[function]
[call site]
05077
hts_str2int
[function]
[call site]
05078
bcf_seqname_safe
[function]
[call site]
05079
bcf_enc_int1
[function]
[call site]
05080
bcf_enc_vint
[function]
[call site]
05081
memcmp
[call site]
05082
bcf_seqname_safe
[function]
[call site]
05083
hts_log
[function]
[call site]
05084
hts_str2dbl
[function]
[call site]
05085
bcf_float_set
[function]
[call site]
05086
bcf_enc_vfloat
[function]
[call site]
05087
__assert_fail
[call site]
05088
bcf_enc_size
[function]
[call site]
05089
serialize_float_array
[function]
[call site]
05090
ks_resize
[function]
[call site]
05091
float_to_le
[function]
[call site]
05092
kstrtok
[function]
[call site]
05093
vcf_parse_format
[function]
[call site]
05094
vcf_parse_format_empty1
[function]
[call site]
05095
bcf_seqname_safe
[function]
[call site]
05096
hts_log
[function]
[call site]
05097
vcf_parse_format_dict2
[function]
[call site]
05098
kstrtok
[function]
[call site]
05099
bcf_seqname_safe
[function]
[call site]
05100
hts_log
[function]
[call site]
05101
kh_get_vdict
[function]
[call site]
05102
bcf_seqname_safe
[function]
[call site]
05103
hts_log
[function]
[call site]
05104
bcf_seqname_safe
[function]
[call site]
05105
hts_log
[function]
[call site]
05106
ksprintf
[function]
[call site]
05107
bcf_hdr_parse_line
[function]
[call site]
05108
bcf_hdr_add_hrec
[function]
[call site]
05109
bcf_hrec_destroy
[function]
[call site]
05110
bcf_hdr_sync
[function]
[call site]
05111
kh_get_vdict
[function]
[call site]
05112
bcf_seqname_safe
[function]
[call site]
05113
hts_log
[function]
[call site]
05114
vcf_parse_format_max3
[function]
[call site]
05115
hts_log
[function]
[call site]
05116
vcf_parse_format_alloc4
[function]
[call site]
05117
bcf_seqname_safe
[function]
[call site]
05118
hts_log
[function]
[call site]
05119
align_mem
[function]
[call site]
05120
kputsn
[function]
[call site]
05121
bcf_seqname_safe
[function]
[call site]
05122
hts_log
[function]
[call site]
05123
bcf_seqname_safe
[function]
[call site]
05124
hts_log
[function]
[call site]
05125
ks_resize
[function]
[call site]
05126
bcf_seqname_safe
[function]
[call site]
05127
hts_log
[function]
[call site]
05128
bcf_seqname_safe
[function]
[call site]
05129
hts_log
[function]
[call site]
05130
vcf_parse_format_fill5
[function]
[call site]
05131
bcf_get_version
[function]
[call site]
05132
bcf_seqname_safe
[function]
[call site]
05133
hts_log
[function]
[call site]
05134
hts_str2uint
[function]
[call site]
05135
bcf_seqname_safe
[function]
[call site]
05136
hts_log
[function]
[call site]
05137
bcf_seqname_safe
[function]
[call site]
05138
hts_log
[function]
[call site]
05139
hts_str2int
[function]
[call site]
05140
bcf_seqname_safe
[function]
[call site]
05141
hts_log
[function]
[call site]
05142
isdigit_c
[function]
[call site]
05143
bcf_float_set
[function]
[call site]
05144
hts_str2dbl
[function]
[call site]
05145
bcf_seqname
[function]
[call site]
05146
hts_log
[function]
[call site]
05147
bcf_float_set
[function]
[call site]
05148
bcf_float_set
[function]
[call site]
05149
bcf_seqname_safe
[function]
[call site]
05150
hts_log
[function]
[call site]
05151
hts_strprint
[function]
[call site]
05152
bcf_seqname_safe
[function]
[call site]
05153
hts_log
[function]
[call site]
05154
bcf_float_set
[function]
[call site]
05155
bcf_float_set
[function]
[call site]
05156
vcf_parse_format_gt6
[function]
[call site]
05157
bcf_enc_int1
[function]
[call site]
05158
bcf_enc_size
[function]
[call site]
05159
kputsn
[function]
[call site]
05160
bcf_enc_vint
[function]
[call site]
05161
bcf_enc_size
[function]
[call site]
05162
serialize_float_array
[function]
[call site]
05163
bcf_seqname_safe
[function]
[call site]
05164
hts_log
[function]
[call site]
05165
vcf_parse_format_check7
[function]
[call site]
05166
bcf_seqname_safe
[function]
[call site]
05167
hts_log
[function]
[call site]
05168
bcf_seqname_safe
[function]
[call site]
05169
hts_log
[function]
[call site]
05170
get_rlen
[function]
[call site]
05171
bcf_hdr_id2int
[function]
[call site]
05172
bcf_hdr_id2int
[function]
[call site]
05173
bcf_hdr_id2int
[function]
[call site]
05174
strcmp
[call site]
05175
strcmp
[call site]
05176
strcmp
[call site]
05177
strlen
[call site]
05178
bcf_dec_size
[function]
[call site]
05179
bcf_dec_typed_int1
[function]
[call site]
05180
bcf_dec_int1
[function]
[call site]
05181
le_to_i8
[function]
[call site]
05182
le_to_i16
[function]
[call site]
05183
le_to_i32
[function]
[call site]
05184
le_to_i64
[function]
[call site]
05185
le_to_u64
[function]
[call site]
05186
bcf_dec_size
[function]
[call site]
05187
strncmp
[call site]
05188
strncmp
[call site]
05189
strncmp
[call site]
05190
bcf_dec_size
[function]
[call site]
05191
bcf_get_info
[function]
[call site]
05192
bcf_hdr_id2int
[function]
[call site]
05193
bcf_get_info_id
[function]
[call site]
05194
bcf_unpack
[function]
[call site]
05195
bcf_fmt_sized_array
[function]
[call site]
05196
bcf_dec_size
[function]
[call site]
05197
bcf_fmt_array
[function]
[call site]
05198
kputc_
[function]
[call site]
05199
memchr
[call site]
05200
kputsn
[function]
[call site]
05201
kputc
[function]
[call site]
05202
le_to_i8
[function]
[call site]
05203
kputc_
[function]
[call site]
05204
kputc
[function]
[call site]
05205
kputw
[function]
[call site]
05206
le_to_i16
[function]
[call site]
05207
kputc_
[function]
[call site]
05208
kputc
[function]
[call site]
05209
kputw
[function]
[call site]
05210
le_to_i32
[function]
[call site]
05211
kputc_
[function]
[call site]
05212
kputc
[function]
[call site]
05213
kputw
[function]
[call site]
05214
le_to_u32
[function]
[call site]
05215
kputc_
[function]
[call site]
05216
kputc
[function]
[call site]
05217
le_to_float
[function]
[call site]
05218
kputd
[function]
[call site]
05219
hts_log
[function]
[call site]
05220
exit
[call site]
05221
kputc_
[function]
[call site]
05222
hts_realloc_or_die
[function]
[call site]
05223
bcf_fmt_sized_array
[function]
[call site]
05224
kputc_
[function]
[call site]
05225
bcf_dec_size
[function]
[call site]
05226
hts_realloc_or_die
[function]
[call site]
05227
bcf_dec_int1
[function]
[call site]
05228
hts_realloc_or_die
[function]
[call site]
05229
bcf_unpack_info_core1
[function]
[call site]
05230
bcf_dec_typed_int1
[function]
[call site]
05231
bcf_dec_size
[function]
[call site]
05232
le_to_i16
[function]
[call site]
05233
le_to_i32
[function]
[call site]
05234
le_to_float
[function]
[call site]
05235
le_to_i64
[function]
[call site]
05236
hts_realloc_or_die
[function]
[call site]
05237
bcf_unpack_fmt_core1
[function]
[call site]
05238
bcf_dec_typed_int1
[function]
[call site]
05239
bcf_dec_size
[function]
[call site]
05240
bcf_get_info
[function]
[call site]
05241
bcf_dec_typed_int1
[function]
[call site]
05242
bcf_unpack_info_core1
[function]
[call site]
05243
bcf_unpack_info_core1
[function]
[call site]
05244
bcf_dec_size
[function]
[call site]
05245
bcf_get_fmt
[function]
[call site]
05246
bcf_hdr_id2int
[function]
[call site]
05247
bcf_get_fmt_id
[function]
[call site]
05248
bcf_unpack
[function]
[call site]
05249
bcf_dec_typed_int1
[function]
[call site]
05250
bcf_unpack_fmt_core1
[function]
[call site]
05251
bcf_dec_size
[function]
[call site]
05252
bcf_read1_core
[function]
[call site]
05253
bgzf_read
[function]
[call site]
05254
bcf_clear
[function]
[call site]
05255
le_to_u32
[function]
[call site]
05256
le_to_u32
[function]
[call site]
05257
ks_resize
[function]
[call site]
05258
ks_resize
[function]
[call site]
05259
le_to_i32
[function]
[call site]
05260
le_to_u32
[function]
[call site]
05261
le_to_i32
[function]
[call site]
05262
le_to_float
[function]
[call site]
05263
le_to_u16
[function]
[call site]
05264
le_to_u16
[function]
[call site]
05265
le_to_u32
[function]
[call site]
05266
bgzf_read
[function]
[call site]
05267
bgzf_read
[function]
[call site]
05268
bcf_record_check
[function]
[call site]
05269
hts_log
[function]
[call site]
05270
bcf_dec_size_safe
[function]
[call site]
05271
bcf_dec_typed_int1_safe
[function]
[call site]
05272
le_to_i16
[function]
[call site]
05273
le_to_i32
[function]
[call site]
05274
bcf_seqname_safe
[function]
[call site]
05275
get_type_name
[function]
[call site]
05276
hts_log
[function]
[call site]
05277
bcf_seqname_safe
[function]
[call site]
05278
hts_log
[function]
[call site]
05279
bcf_dec_size_safe
[function]
[call site]
05280
bcf_seqname_safe
[function]
[call site]
05281
get_type_name
[function]
[call site]
05282
hts_log
[function]
[call site]
05283
bcf_dec_size_safe
[function]
[call site]
05284
bcf_seqname_safe
[function]
[call site]
05285
get_type_name
[function]
[call site]
05286
hts_log
[function]
[call site]
05287
bcf_dec_int1
[function]
[call site]
05288
bcf_seqname_safe
[function]
[call site]
05289
bcf_dec_typed_int1_safe
[function]
[call site]
05290
bcf_seqname_safe
[function]
[call site]
05291
hts_log
[function]
[call site]
05292
bcf_dec_size_safe
[function]
[call site]
05293
bcf_seqname_safe
[function]
[call site]
05294
get_type_name
[function]
[call site]
05295
hts_log
[function]
[call site]
05296
bcf_dec_typed_int1_safe
[function]
[call site]
05297
bcf_record_check_err
[function]
[call site]
05298
bcf_seqname_safe
[function]
[call site]
05299
bcf_dec_size_safe
[function]
[call site]
05300
bcf_record_check_err
[function]
[call site]
05301
bcf_seqname_safe
[function]
[call site]
05302
hts_log
[function]
[call site]
05303
get_rlen
[function]
[call site]
05304
bcf_seqname_safe
[function]
[call site]
05305
hts_log
[function]
[call site]
05306
bcf_seqname_safe
[function]
[call site]
05307
hts_log
[function]
[call site]
05308
bcf_subset_format
[function]
[call site]
05309
hts_realloc_or_die
[function]
[call site]
05310
bcf_unpack_fmt_core1
[function]
[call site]
05311
bcf_write
[function]
[call site]
05312
bcf_hdr_sync
[function]
[call site]
05313
bcf_seqname_safe
[function]
[call site]
05314
hts_log
[function]
[call site]
05315
vcf_write
[function]
[call site]
05316
vcf_format
[function]
[call site]
05317
bcf_seqname
[function]
[call site]
05318
hts_log
[function]
[call site]
05319
__errno_location
[call site]
05320
bcf_unpack
[function]
[call site]
05321
get_hdr_aux
[function]
[call site]
05322
calloc
[call site]
05323
kputs
[function]
[call site]
05324
kputc_
[function]
[call site]
05325
kputll
[function]
[call site]
05326
kputc_
[function]
[call site]
05327
kputs
[function]
[call site]
05328
kputc_
[function]
[call site]
05329
kputs
[function]
[call site]
05330
kputc_
[function]
[call site]
05331
kputc_
[function]
[call site]
05332
kputc_
[function]
[call site]
05333
kputs
[function]
[call site]
05334
kputc_
[function]
[call site]
05335
kputc_
[function]
[call site]
05336
bcf_float_is_missing
[function]
[call site]
05337
kputc_
[function]
[call site]
05338
kputd
[function]
[call site]
05339
kputc_
[function]
[call site]
05340
bcf_seqname_safe
[function]
[call site]
05341
hts_log
[function]
[call site]
05342
__errno_location
[call site]
05343
kputc_
[function]
[call site]
05344
strlen
[call site]
05345
kputsn
[function]
[call site]
05346
kputc_
[function]
[call site]
05347
kputc_
[function]
[call site]
05348
bcf_dec_typed_int1
[function]
[call site]
05349
bcf_dec_size
[function]
[call site]
05350
bcf_seqname_safe
[function]
[call site]
05351
hts_log
[function]
[call site]
05352
__errno_location
[call site]
05353
strlen
[call site]
05354
ks_resize
[function]
[call site]
05355
bcf_fmt_array
[function]
[call site]
05356
bcf_float_is_missing
[function]
[call site]
05357
kputc_
[function]
[call site]
05358
kputd
[function]
[call site]
05359
kputc_
[function]
[call site]
05360
kputc_
[function]
[call site]
05361
kputw
[function]
[call site]
05362
kputc_
[function]
[call site]
05363
kputll
[function]
[call site]
05364
bcf_seqname_safe
[function]
[call site]
05365
hts_log
[function]
[call site]
05366
__errno_location
[call site]
05367
kputc_
[function]
[call site]
05368
kputc_
[function]
[call site]
05369
bcf_dec_typed_int1
[function]
[call site]
05370
bcf_dec_size
[function]
[call site]
05371
kputc_
[function]
[call site]
05372
bcf_seqname_safe
[function]
[call site]
05373
hts_log
[function]
[call site]
05374
__errno_location
[call site]
05375
strlen
[call site]
05376
kputsn
[function]
[call site]
05377
kputsn
[function]
[call site]
05378
kputc_
[function]
[call site]
05379
kputc_
[function]
[call site]
05380
bcf_format_gt_v2
[function]
[call site]
05381
le_to_i8
[function]
[call site]
05382
kputc
[function]
[call site]
05383
kputw
[function]
[call site]
05384
le_to_i16
[function]
[call site]
05385
kputc
[function]
[call site]
05386
kputw
[function]
[call site]
05387
le_to_i32
[function]
[call site]
05388
kputc
[function]
[call site]
05389
kputw
[function]
[call site]
05390
kputc
[function]
[call site]
05391
hts_log
[function]
[call site]
05392
get_hdr_aux
[function]
[call site]
05393
kinsert_char
[function]
[call site]
05394
ks_resize
[function]
[call site]
05395
kinsert_char
[function]
[call site]
05396
kinsert_char
[function]
[call site]
05397
hts_log
[function]
[call site]
05398
__errno_location
[call site]
05399
bcf_fmt_array1
[function]
[call site]
05400
kputc_
[function]
[call site]
05401
kputc_
[function]
[call site]
05402
kputw
[function]
[call site]
05403
le_to_i16
[function]
[call site]
05404
kputc_
[function]
[call site]
05405
kputw
[function]
[call site]
05406
le_to_i32
[function]
[call site]
05407
kputc_
[function]
[call site]
05408
kputw
[function]
[call site]
05409
le_to_u32
[function]
[call site]
05410
kputc_
[function]
[call site]
05411
le_to_float
[function]
[call site]
05412
kputd
[function]
[call site]
05413
hts_log
[function]
[call site]
05414
bcf_fmt_array
[function]
[call site]
05415
kputc_
[function]
[call site]
05416
bcf_fmt_array1
[function]
[call site]
05417
bcf_fmt_array
[function]
[call site]
05418
kputc_
[function]
[call site]
05419
kputsn
[function]
[call site]
05420
kputc
[function]
[call site]
05421
bgzf_flush_try
[function]
[call site]
05422
hts_idx_amend_last
[function]
[call site]
05423
bgzf_write
[function]
[call site]
05424
hwrite
[function]
[call site]
05425
bcf_seqname_safe
[function]
[call site]
05426
hts_idx_tbi_name
[function]
[call site]
05427
strlen
[call site]
05428
realloc
[call site]
05429
strcpy
[call site]
05430
le_to_u32
[function]
[call site]
05431
u32_to_le
[function]
[call site]
05432
bgzf_idx_push
[function]
[call site]
05433
bcf_strerror
[function]
[call site]
05434
add_desc_to_buffer
[function]
[call site]
05435
add_desc_to_buffer
[function]
[call site]
05439
bcf_seqname_safe
[function]
[call site]
05440
hts_log
[function]
[call site]
05441
bcf1_sync
[function]
[call site]
05442
bcf1_sync_id
[function]
[call site]
05443
strcmp
[call site]
05444
strlen
[call site]
05445
bcf_enc_vchar
[function]
[call site]
05446
bcf_enc_size
[function]
[call site]
05447
bcf1_sync_alleles
[function]
[call site]
05448
bcf1_sync_filter
[function]
[call site]
05452
bcf_enc_vint
[function]
[call site]
05453
bcf_enc_vint
[function]
[call site]
05454
bcf1_sync_info
[function]
[call site]
05455
kputsn_
[function]
[call site]
05456
bcf_unpack
[function]
[call site]
05457
bcf1_sync_id
[function]
[call site]
05458
kputsn_
[function]
[call site]
05459
bcf1_sync_alleles
[function]
[call site]
05460
kputsn_
[function]
[call site]
05461
strlen
[call site]
05462
bcf1_sync_filter
[function]
[call site]
05463
kputsn_
[function]
[call site]
05464
bcf_enc_vint
[function]
[call site]
05465
bcf1_sync_info
[function]
[call site]
05466
kputsn_
[function]
[call site]
05467
kputsn_
[function]
[call site]
05468
bcf_seqname_safe
[function]
[call site]
05469
hts_log
[function]
[call site]
05470
u32_to_le
[function]
[call site]
05471
u32_to_le
[function]
[call site]
05472
i32_to_le
[function]
[call site]
05473
u32_to_le
[function]
[call site]
05474
u32_to_le
[function]
[call site]
05475
float_to_le
[function]
[call site]
05476
u16_to_le
[function]
[call site]
05477
u16_to_le
[function]
[call site]
05478
u32_to_le
[function]
[call site]
05479
bgzf_write
[function]
[call site]
05480
bgzf_write
[function]
[call site]
05481
bgzf_write
[function]
[call site]
05482
bgzf_idx_push
[function]
[call site]
05483
bcf_destroy
[function]
[call site]
05484
bcf_empty
[function]
[call site]
05485
bcf_clear
[function]
[call site]
05486
bcf_hdr_destroy
[function]
[call site]
05487
hts_close_or_abort
[function]
[call site]
05488
hts_close
[function]
[call site]
05489
view_vcf
[function]
[call site]
05490