The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 234 | 4033 | hts_str2dbl | call site: 04033 | bam_sym_lookup |
| 138 | 1551 | hts_hopen | call site: 01551 | hts_process_opts |
| 109 | 4726 | idx_find_and_load | call site: 04726 | hts_idx_load3 |
| 79 | 2532 | zlib_mem_deflate | call site: 02532 | fqz_compress |
| 78 | 3014 | ks_free | call site: 03014 | cram_get_ref |
| 77 | 3903 | sam_parse1 | call site: 03903 | sam_dispatcher_read |
| 69 | 1480 | refs2id | call site: 01480 | hts_tpool_init |
| 67 | 2685 | rans_compress_to_4x16 | call site: 02685 | arith_compress_to |
| 64 | 4867 | idx_find_and_load | call site: 04867 | hts_idx_load3 |
| 62 | 1789 | sam_format1_append | call site: 01789 | hts_set_opt |
| 51 | 1052 | hwrite | call site: 01052 | bgzf_close_mt |
| 51 | 4387 | cram_put_bam_seq | call site: 04387 | sam_dispatcher_write |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
realloc
[call site]
00024
__ac_FNV1a_hash_string
[function]
[call site]
00025
strcmp
[call site]
00026
__errno_location
[call site]
00027
strerror
[call site]
00028
hts_log
[function]
[call site]
00029
priority
[function]
[call site]
00030
hfile_add_scheme_handler
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
init_add_plugin
[function]
[call site]
00033
hts_log
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hfile_plugin_init_mem
[function]
[call site]
00037
hfile_add_scheme_handler
[function]
[call site]
00038
init_add_plugin
[function]
[call site]
00039
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00040
hfile_add_scheme_handler
[function]
[call site]
00041
init_add_plugin
[function]
[call site]
00042
hfile_plugin_init_libcurl
[function]
[call site]
00043
hts_version
[function]
[call site]
00044
curl_global_init
[call site]
00045
easy_errno
[function]
[call site]
00046
curl_easy_getinfo
[call site]
00047
curl_easy_getinfo
[call site]
00048
http_status_errno
[function]
[call site]
00049
curl_easy_strerror
[call site]
00050
hts_log
[function]
[call site]
00051
__errno_location
[call site]
00052
curl_share_init
[call site]
00053
curl_global_cleanup
[call site]
00054
__errno_location
[call site]
00055
curl_share_setopt
[call site]
00056
share_lock
[function]
[call site]
00057
pthread_mutex_lock
[call site]
00058
curl_share_setopt
[call site]
00059
share_unlock
[function]
[call site]
00060
pthread_mutex_unlock
[call site]
00061
curl_share_setopt
[call site]
00062
curl_share_cleanup
[call site]
00063
curl_global_cleanup
[call site]
00064
__errno_location
[call site]
00065
getenv
[call site]
00066
strdup
[call site]
00067
kh_init_auth_map
[function]
[call site]
00068
calloc
[call site]
00069
__errno_location
[call site]
00070
kh_destroy_auth_map
[function]
[call site]
00071
curl_share_cleanup
[call site]
00072
curl_global_cleanup
[call site]
00073
__errno_location
[call site]
00074
getenv
[call site]
00075
strcmp
[call site]
00076
curl_version_info
[call site]
00077
ksprintf
[function]
[call site]
00078
kvsprintf
[function]
[call site]
00079
kputd
[function]
[call site]
00080
kputsn
[function]
[call site]
00081
__errno_location
[call site]
00082
ks_resize
[function]
[call site]
00083
realloc
[call site]
00084
kputsn
[function]
[call site]
00085
kputc
[function]
[call site]
00086
ks_resize
[function]
[call site]
00087
ks_resize
[function]
[call site]
00088
snprintf
[call site]
00089
kputsn
[function]
[call site]
00090
vsnprintf
[call site]
00091
ks_resize
[function]
[call site]
00092
vsnprintf
[call site]
00093
hfile_add_scheme_handler
[function]
[call site]
00094
init_add_plugin
[function]
[call site]
00095
hfile_plugin_init_gcs
[function]
[call site]
00096
hfile_add_scheme_handler
[function]
[call site]
00097
hfile_add_scheme_handler
[function]
[call site]
00098
hfile_add_scheme_handler
[function]
[call site]
00099
init_add_plugin
[function]
[call site]
00100
hfile_plugin_init_s3
[function]
[call site]
00101
hfile_add_scheme_handler
[function]
[call site]
00102
hfile_add_scheme_handler
[function]
[call site]
00103
hfile_add_scheme_handler
[function]
[call site]
00104
init_add_plugin
[function]
[call site]
00105
hfile_plugin_init_s3_write
[function]
[call site]
00106
hts_version
[function]
[call site]
00107
curl_global_init
[call site]
00108
curl_share_init
[call site]
00109
curl_global_cleanup
[call site]
00110
__errno_location
[call site]
00111
curl_share_setopt
[call site]
00112
share_lock
[function]
[call site]
00113
pthread_mutex_lock
[call site]
00114
curl_share_setopt
[call site]
00115
share_unlock
[function]
[call site]
00116
pthread_mutex_unlock
[call site]
00117
curl_share_setopt
[call site]
00118
curl_share_cleanup
[call site]
00119
curl_global_cleanup
[call site]
00120
__errno_location
[call site]
00121
curl_version_info
[call site]
00122
ksprintf
[function]
[call site]
00123
hfile_add_scheme_handler
[function]
[call site]
00124
hfile_add_scheme_handler
[function]
[call site]
00125
hfile_add_scheme_handler
[function]
[call site]
00126
atexit
[call site]
00127
hfile_exit
[function]
[call site]
00128
hfile_shutdown
[function]
[call site]
00129
pthread_mutex_lock
[call site]
00130
kh_destroy_scheme_string
[function]
[call site]
00131
pthread_mutex_unlock
[call site]
00132
pthread_mutex_destroy
[call site]
00133
pthread_mutex_unlock
[call site]
00134
pthread_mutex_unlock
[call site]
00135
kh_get_scheme_string
[function]
[call site]
00136
strchr
[call site]
00137
strcmp
[call site]
00138
hopen_fd_stdinout
[function]
[call site]
00139
strchr
[call site]
00140
snprintf
[call site]
00141
hdopen
[function]
[call site]
00142
blksize
[function]
[call site]
00143
fstat
[call site]
00144
hfile_init
[function]
[call site]
00145
strchr
[call site]
00146
posix_memalign
[call site]
00147
strchr
[call site]
00148
hfile_destroy
[function]
[call site]
00149
__errno_location
[call site]
00150
__errno_location
[call site]
00151
strchr
[call site]
00152
strchr
[call site]
00153
hopen_fd
[function]
[call site]
00154
hfile_oflags
[function]
[call site]
00155
open
[call site]
00156
blksize
[function]
[call site]
00157
hfile_init
[function]
[call site]
00158
__errno_location
[call site]
00159
close
[call site]
00160
hfile_destroy
[function]
[call site]
00161
hts_hopen
[function]
[call site]
00162
calloc
[call site]
00163
strdup
[call site]
00164
ed_is_big
[function]
[call site]
00165
strchr
[call site]
00166
strncpy
[call site]
00167
strncpy
[call site]
00168
strchr
[call site]
00169
hts_detect_format2
[function]
[call site]
00170
hpeek
[function]
[call site]
00171
refill_buffer
[function]
[call site]
00172
__errno_location
[call site]
00173
memcmp
[call site]
00174
memcmp
[call site]
00175
decompress_peek_gz
[function]
[call site]
00176
hpeek
[function]
[call site]
00177
inflateInit2_
[call site]
00178
inflate
[call site]
00179
inflateReset
[call site]
00180
inflateEnd
[call site]
00181
memcmp
[call site]
00182
memcmp
[call site]
00183
memcmp
[call site]
00184
memcmp
[call site]
00185
decompress_peek_xz
[function]
[call site]
00186
hpeek
[function]
[call site]
00187
lzma_easy_decoder_memusage
[call site]
00188
lzma_stream_decoder
[call site]
00189
lzma_code
[call site]
00190
lzma_end
[call site]
00191
lzma_end
[call site]
00192
memcmp
[call site]
00193
hpeek
[function]
[call site]
00194
strcmp
[call site]
00195
find_file_extension
[function]
[call site]
00196
strstr
[call site]
00197
strlen
[call site]
00198
tolower_c
[function]
[call site]
00199
memcmp
[call site]
00200
memcmp
[call site]
00201
memcmp
[call site]
00202
memcmp
[call site]
00203
memcmp
[call site]
00204
memcmp
[call site]
00205
memcmp
[call site]
00206
strcmp
[call site]
00207
memcmp
[call site]
00208
parse_version
[function]
[call site]
00209
isdigit_c
[function]
[call site]
00210
__ctype_b_loc
[call site]
00211
isdigit_c
[function]
[call site]
00212
memcmp
[call site]
00213
memcmp
[call site]
00214
memcmp
[call site]
00215
memcmp
[call site]
00216
parse_version
[function]
[call site]
00217
memcmp
[call site]
00218
cmp_nonblank
[function]
[call site]
00219
isspace_c
[function]
[call site]
00220
__ctype_b_loc
[call site]
00221
memcmp
[call site]
00222
is_fastaq
[function]
[call site]
00223
is_fastaq
[function]
[call site]
00227
parse_tabbed_text
[function]
[call site]
00228
isdigit_c
[function]
[call site]
00229
strchr
[call site]
00230
isdigit_c
[function]
[call site]
00231
colmatch
[function]
[call site]
00232
colmatch
[function]
[call site]
00233
strstr
[call site]
00234
colmatch
[function]
[call site]
00235
strstr
[call site]
00236
colmatch
[function]
[call site]
00237
colmatch
[function]
[call site]
00238
is_text_only
[function]
[call site]
00239
__errno_location
[call site]
00240
hopen_htsget_redirect
[function]
[call site]
00241
hfile_init
[function]
[call site]
00242
parse_ga4gh_redirect_json
[function]
[call site]
00243
hts_json_fnext
[function]
[call site]
00244
hgetc
[function]
[call site]
00245
hgetc2
[function]
[call site]
00246
refill_buffer
[function]
[call site]
00247
fscan_string
[function]
[call site]
00248
hgetc
[function]
[call site]
00249
hgetc
[function]
[call site]
00250
kputc
[function]
[call site]
00251
kputc
[function]
[call site]
00252
kputc
[function]
[call site]
00253
kputc
[function]
[call site]
00254
kputc
[function]
[call site]
00255
kputc
[function]
[call site]
00256
hgetc
[function]
[call site]
00257
dehex
[function]
[call site]
00258
hgetc
[function]
[call site]
00259
dehex
[function]
[call site]
00260
hgetc
[function]
[call site]
00261
dehex
[function]
[call site]
00262
hgetc
[function]
[call site]
00263
dehex
[function]
[call site]
00264
encode_utf8
[function]
[call site]
00265
kputsn
[function]
[call site]
00266
kputc
[function]
[call site]
00267
kputsn
[function]
[call site]
00268
kputc
[function]
[call site]
00269
hpeek
[function]
[call site]
00270
strchr
[call site]
00271
hgetc
[function]
[call site]
00272
kputc
[function]
[call site]
00273
token_type
[function]
[call site]
00274
hts_json_fnext
[function]
[call site]
00278
strcmp
[call site]
00279
parse_ga4gh_body_json
[function]
[call site]
00280
hts_json_fnext
[function]
[call site]
00281
hts_json_fnext
[function]
[call site]
00282
strcmp
[call site]
00283
hts_json_fnext
[function]
[call site]
00284
hts_json_fnext
[function]
[call site]
00285
hts_realloc_or_die
[function]
[call site]
00286
__errno_location
[call site]
00287
realloc
[call site]
00288
__errno_location
[call site]
00289
strerror
[call site]
00290
hts_log
[function]
[call site]
00291
exit
[call site]
00292
hts_json_fnext
[function]
[call site]
00293
strcmp
[call site]
00294
hts_json_fnext
[function]
[call site]
00295
ks_release
[function]
[call site]
00296
strcmp
[call site]
00297
hts_json_fnext
[function]
[call site]
00298
hts_json_fnext
[function]
[call site]
00299
hts_json_fnext
[function]
[call site]
00300
kputs
[function]
[call site]
00301
__errno_location
[call site]
00302
strlen
[call site]
00303
kputsn
[function]
[call site]
00304
kputs
[function]
[call site]
00305
hts_realloc_or_die
[function]
[call site]
00306
ks_release
[function]
[call site]
00307
hts_json_fskip_value
[function]
[call site]
00308
skip_value
[function]
[call site]
00309
fnext
[function]
[call site]
00310
hts_json_fnext
[function]
[call site]
00311
strcmp
[call site]
00312
hts_json_fnext
[function]
[call site]
00313
hts_log
[function]
[call site]
00314
hts_json_fskip_value
[function]
[call site]
00315
hts_json_fnext
[function]
[call site]
00316
free_all_parts
[function]
[call site]
00317
free_part
[function]
[call site]
00318
hfile_destroy
[function]
[call site]
00319
__errno_location
[call site]
00320
hclose_abruptly
[function]
[call site]
00321
__errno_location
[call site]
00322
hfile_destroy
[function]
[call site]
00323
__errno_location
[call site]
00324
hts_crypt4gh_redirect
[function]
[call site]
00325
strlen
[call site]
00326
snprintf
[call site]
00327
strchr
[call site]
00328
snprintf
[call site]
00329
hopen
[function]
[call site]
00330
hts_detect_format2
[function]
[call site]
00331
strchr
[call site]
00332
strchr
[call site]
00333
strchr
[call site]
00334
strchr
[call site]
00335
strchr
[call site]
00336
strchr
[call site]
00337
strchr
[call site]
00338
strchr
[call site]
00339
abort
[call site]
00340
format_category
[function]
[call site]
00341
__errno_location
[call site]
00342
bgzf_hopen
[function]
[call site]
00343
strchr
[call site]
00344
bgzf_read_init
[function]
[call site]
00345
hpeek
[function]
[call site]
00346
calloc
[call site]
00347
memcmp
[call site]
00348
memcmp
[call site]
00349
hts_log
[function]
[call site]
00350
razf_info
[function]
[call site]
00351
strcmp
[call site]
00352
hseek
[function]
[call site]
00353
writebuffer_is_nonempty
[function]
[call site]
00354
flush_buffer
[function]
[call site]
00355
__errno_location
[call site]
00356
htell
[function]
[call site]
00357
__errno_location
[call site]
00358
__errno_location
[call site]
00359
__errno_location
[call site]
00360
hread
[function]
[call site]
00361
hread2
[function]
[call site]
00362
__errno_location
[call site]
00363
refill_buffer
[function]
[call site]
00364
ed_is_big
[function]
[call site]
00365
ed_swap_8p
[function]
[call site]
00366
ed_swap_8
[function]
[call site]
00367
hts_log
[function]
[call site]
00368
hts_log
[function]
[call site]
00369
__errno_location
[call site]
00370
kh_init_cache
[function]
[call site]
00371
calloc
[call site]
00372
strchr
[call site]
00373
bgzf_write_init
[function]
[call site]
00374
calloc
[call site]
00375
mode2level
[function]
[call site]
00376
strchr
[call site]
00377
strchr
[call site]
00378
calloc
[call site]
00379
deflateInit2_
[call site]
00380
bgzf_zerr
[function]
[call site]
00381
strerror
[call site]
00382
snprintf
[call site]
00383
hts_log
[function]
[call site]
00384
__errno_location
[call site]
00385
strerror
[call site]
00386
hts_log
[function]
[call site]
00387
__errno_location
[call site]
00388
ed_is_big
[function]
[call site]
00389
cram_dopen
[function]
[call site]
00390
calloc
[call site]
00391
cram_read_file_def
[function]
[call site]
00392
hread
[function]
[call site]
00393
memcmp
[call site]
00394
hts_log
[function]
[call site]
00395
cram_init_tables
[function]
[call site]
00396
cram_init_varint
[function]
[call site]
00397
cram_read_SAM_hdr
[function]
[call site]
00398
int32_decode
[function]
[call site]
00399
hread
[function]
[call site]
00400
hread
[function]
[call site]
00401
cram_read_container
[function]
[call site]
00402
int32_decode
[function]
[call site]
00403
crc32
[call site]
00404
calloc
[call site]
00405
__errno_location
[call site]
00406
cram_free_container
[function]
[call site]
00407
cram_free_compression_header
[function]
[call site]
00408
kh_destroy_map
[function]
[call site]
00409
cram_free_block
[function]
[call site]
00410
kh_destroy_m_s2i
[function]
[call site]
00411
string_pool_destroy
[function]
[call site]
00412
cram_free_block
[function]
[call site]
00413
cram_free_slice
[function]
[call site]
00414
cram_free_block
[function]
[call site]
00415
cram_free_block
[function]
[call site]
00416
cram_free_block
[function]
[call site]
00417
cram_free_slice_header
[function]
[call site]
00418
cram_free_block
[function]
[call site]
00419
cram_free_block
[function]
[call site]
00420
cram_free_block
[function]
[call site]
00421
cram_free_block
[function]
[call site]
00422
cram_free_block
[function]
[call site]
00423
cram_free_block
[function]
[call site]
00424
string_pool_destroy
[function]
[call site]
00425
kh_destroy_m_s2i
[function]
[call site]
00426
kh_destroy_m_s2i
[function]
[call site]
00427
cram_free_slice
[function]
[call site]
00428
cram_stats_free
[function]
[call site]
00429
kh_destroy_m_i2i
[function]
[call site]
00430
cram_free_block
[function]
[call site]
00431
cram_free_block
[function]
[call site]
00432
kh_destroy_m_tagmap
[function]
[call site]
00433
free_bam_list
[function]
[call site]
00434
bam_destroy1
[function]
[call site]
00435
bam_get_mempolicy
[function]
[call site]
00436
bam_get_mempolicy
[function]
[call site]
00437
bam_get_mempolicy
[function]
[call site]
00438
__errno_location
[call site]
00439
cram_free_container
[function]
[call site]
00440
cram_free_container
[function]
[call site]
00441
int32_decode
[function]
[call site]
00442
cram_free_container
[function]
[call site]
00443
hts_log
[function]
[call site]
00444
cram_free_container
[function]
[call site]
00445
cram_free_container
[function]
[call site]
00446
cram_read_block
[function]
[call site]
00447
hgetc
[function]
[call site]
00448
crc32
[call site]
00449
hgetc
[function]
[call site]
00450
crc32
[call site]
00451
hread
[function]
[call site]
00452
hread
[function]
[call site]
00453
int32_decode
[function]
[call site]
00454
cram_free_container
[function]
[call site]
00455
cram_uncompress_block
[function]
[call site]
00456
crc32
[call site]
00457
hts_log
[function]
[call site]
00458
__assert_fail
[call site]
00459
zlib_mem_inflate
[function]
[call site]
00460
inflateInit2_
[call site]
00461
hts_log
[function]
[call site]
00462
inflate
[call site]
00463
hts_log
[function]
[call site]
00464
inflateEnd
[call site]
00465
realloc
[call site]
00466
inflateEnd
[call site]
00467
inflateEnd
[call site]
00468
BZ2_bzBuffToBuffDecompress
[call site]
00469
lzma_mem_inflate
[function]
[call site]
00470
lzma_easy_decoder_memusage
[call site]
00471
lzma_stream_decoder
[call site]
00472
realloc
[call site]
00473
lzma_code
[call site]
00474
hts_log
[function]
[call site]
00475
lzma_code
[call site]
00476
hts_log
[function]
[call site]
00477
realloc
[call site]
00478
lzma_end
[call site]
00479
lzma_end
[call site]
00480
rans_uncompress
[function]
[call site]
00481
rans_uncompress_O1
[function]
[call site]
00482
htscodecs_tls_calloc
[function]
[call site]
00483
htscodecs_tls_alloc
[function]
[call site]
00484
pthread_once
[call site]
00485
htscodecs_tls_init
[function]
[call site]
00486
pthread_key_create
[call site]
00487
htscodecs_tls_free_all
[function]
[call site]
00488
fprintf
[call site]
00489
strerror
[call site]
00490
fprintf
[call site]
00491
pthread_getspecific
[call site]
00492
calloc
[call site]
00493
pthread_setspecific
[call site]
00494
fprintf
[call site]
00495
calloc
[call site]
00496
RansDecSymbolInit32
[function]
[call site]
00497
__assert_fail
[call site]
00498
__assert_fail
[call site]
00499
RansDecInit
[function]
[call site]
00500
RansDecInit
[function]
[call site]
00501
RansDecInit
[function]
[call site]
00502
RansDecInit
[function]
[call site]
00503
RansDecAdvanceStep
[function]
[call site]
00504
RansDecAdvanceStep
[function]
[call site]
00505
RansDecAdvanceStep
[function]
[call site]
00506
RansDecAdvanceStep
[function]
[call site]
00507
RansDecRenorm2
[function]
[call site]
00508
RansDecRenorm2
[function]
[call site]
00509
RansDecRenormSafe
[function]
[call site]
00510
RansDecRenormSafe
[function]
[call site]
00511
RansDecRenormSafe
[function]
[call site]
00512
RansDecRenormSafe
[function]
[call site]
00513
RansDecGet
[function]
[call site]
00514
RansDecRenormSafe
[function]
[call site]
00515
htscodecs_tls_free
[function]
[call site]
00516
rans_uncompress_O0
[function]
[call site]
00520
RansDecInit
[function]
[call site]
00521
RansDecInit
[function]
[call site]
00522
RansDecInit
[function]
[call site]
00523
RansDecInit
[function]
[call site]
00524
RansDecRenorm2
[function]
[call site]
00525
RansDecRenorm2
[function]
[call site]
00526
RansDecRenormSafe
[function]
[call site]
00527
RansDecRenormSafe
[function]
[call site]
00528
RansDecRenormSafe
[function]
[call site]
00529
RansDecRenormSafe
[function]
[call site]
00530
fqz_decompress
[function]
[call site]
00531
uncompress_block_fqz2f
[function]
[call site]
00532
var_get_u32
[function]
[call site]
00533
fqz_read_parameters
[function]
[call site]
00534
read_array
[function]
[call site]
00535
fqz_read_parameters1
[function]
[call site]
00536
read_array
[function]
[call site]
00537
read_array
[function]
[call site]
00538
read_array
[function]
[call site]
00539
fqz_free_parameters
[function]
[call site]
00540
fqz_create_models
[function]
[call site]
00541
htscodecs_tls_alloc
[function]
[call site]
00542
SIMPLE_MODEL256_init
[function]
[call site]
00543
SIMPLE_MODEL256_init
[function]
[call site]
00544
SIMPLE_MODEL2_init
[function]
[call site]
00545
SIMPLE_MODEL2_init
[function]
[call site]
00546
SIMPLE_MODEL256_init
[function]
[call site]
00547
RC_SetInput
[function]
[call site]
00548
RC_StartDecode
[function]
[call site]
00549
realloc
[call site]
00550
realloc
[call site]
00551
decompress_new_read
[function]
[call site]
00552
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00553
RC_GetFreq
[function]
[call site]
00554
RC_Decode
[function]
[call site]
00555
SIMPLE_MODEL256_normalize
[function]
[call site]
00556
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00557
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00558
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00559
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00560
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00561
SIMPLE_MODEL2_normalize
[function]
[call site]
00562
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00563
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00564
fqz_update_ctx
[function]
[call site]
00565
realloc
[call site]
00566
realloc
[call site]
00567
RC_FinishDecode
[function]
[call site]
00568
fqz_destroy_models
[function]
[call site]
00569
htscodecs_tls_free
[function]
[call site]
00570
fqz_free_parameters
[function]
[call site]
00571
fqz_destroy_models
[function]
[call site]
00572
fqz_free_parameters
[function]
[call site]
00573
rans_uncompress_4x16
[function]
[call site]
00574
rans_uncompress_to_4x16
[function]
[call site]
00575
var_get_u32
[function]
[call site]
00576
var_get_u32
[function]
[call site]
00577
rans_uncompress_to_4x16
[function]
[call site]
00578
unstripe
[function]
[call site]
00579
var_get_u32
[function]
[call site]
00580
hts_unpack_meta
[function]
[call site]
00581
var_get_u32
[function]
[call site]
00582
var_get_u32
[function]
[call site]
00583
var_get_u32
[function]
[call site]
00584
var_get_u32
[function]
[call site]
00585
rans_dec_func
[function]
[call site]
00586
pthread_once
[call site]
00587
htscodecs_tls_cpu_init
[function]
[call site]
00588
__get_cpuid_max
[function]
[call site]
00589
not_ancient_darwin
[function]
[call site]
00590
strerror
[call site]
00591
fprintf
[call site]
00592
fprintf
[call site]
00593
rans_dec_func
[function]
[call site]
00594
hts_rle_decode
[function]
[call site]
00595
var_get_u32
[function]
[call site]
00596
hts_unpack
[function]
[call site]
00597
arith_uncompress_to
[function]
[call site]
00598
var_get_u32
[function]
[call site]
00599
var_get_u32
[function]
[call site]
00600
arith_uncompress_to
[function]
[call site]
00601
unstripe
[function]
[call site]
00602
var_get_u32
[function]
[call site]
00603
hts_unpack_meta
[function]
[call site]
00604
var_get_u32
[function]
[call site]
00605
BZ2_bzBuffToBuffDecompress
[call site]
00606
arith_uncompress_O1_RLE
[function]
[call site]
00607
htscodecs_tls_alloc
[function]
[call site]
00608
SIMPLE_MODEL256_init
[function]
[call site]
00609
htscodecs_tls_alloc
[function]
[call site]
00610
htscodecs_tls_free
[function]
[call site]
00611
SIMPLE_MODEL258_init
[function]
[call site]
00612
RC_SetInput
[function]
[call site]
00613
RC_StartDecode
[function]
[call site]
00614
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00615
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00616
SIMPLE_MODEL258_normalize
[function]
[call site]
00617
RC_FinishDecode
[function]
[call site]
00618
htscodecs_tls_free
[function]
[call site]
00619
htscodecs_tls_free
[function]
[call site]
00620
htscodecs_tls_free
[function]
[call site]
00621
htscodecs_tls_free
[function]
[call site]
00622
arith_uncompress_O0_RLE
[function]
[call site]
00623
SIMPLE_MODEL256_init
[function]
[call site]
00624
htscodecs_tls_alloc
[function]
[call site]
00625
SIMPLE_MODEL258_init
[function]
[call site]
00626
RC_SetInput
[function]
[call site]
00627
RC_StartDecode
[function]
[call site]
00628
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00629
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00630
RC_FinishDecode
[function]
[call site]
00631
htscodecs_tls_free
[function]
[call site]
00632
htscodecs_tls_free
[function]
[call site]
00633
arith_uncompress_O1
[function]
[call site]
00634
htscodecs_tls_alloc
[function]
[call site]
00635
SIMPLE_MODEL256_init
[function]
[call site]
00636
RC_SetInput
[function]
[call site]
00637
RC_StartDecode
[function]
[call site]
00638
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00639
RC_FinishDecode
[function]
[call site]
00640
htscodecs_tls_free
[function]
[call site]
00641
htscodecs_tls_free
[function]
[call site]
00642
arith_uncompress_O0
[function]
[call site]
00643
SIMPLE_MODEL256_init
[function]
[call site]
00644
RC_SetInput
[function]
[call site]
00645
RC_StartDecode
[function]
[call site]
00646
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00647
RC_FinishDecode
[function]
[call site]
00648
hts_unpack
[function]
[call site]
00649
tok3_decode_names
[function]
[call site]
00650
create_context
[function]
[call site]
00651
fprintf
[call site]
00652
htscodecs_tls_alloc
[function]
[call site]
00653
uncompressed_size
[function]
[call site]
00654
var_get_u32
[function]
[call site]
00655
var_get_u32
[function]
[call site]
00656
uncompress
[function]
[call site]
00657
var_get_u32
[function]
[call site]
00658
arith_decode
[function]
[call site]
00659
var_get_u32
[function]
[call site]
00660
arith_uncompress_to
[function]
[call site]
00661
rans_decode
[function]
[call site]
00662
var_get_u32
[function]
[call site]
00663
rans_uncompress_to_4x16
[function]
[call site]
00664
decode_name
[function]
[call site]
00665
decode_token_type
[function]
[call site]
00666
decode_token_int
[function]
[call site]
00667
strlen
[call site]
00668
strcpy
[call site]
00669
strlen
[call site]
00670
decode_token_type
[function]
[call site]
00671
decode_token_char
[function]
[call site]
00672
decode_token_alpha
[function]
[call site]
00673
decode_token_int1
[function]
[call site]
00674
decode_token_int
[function]
[call site]
00675
append_uint32_fixed
[function]
[call site]
00676
decode_token_int1
[function]
[call site]
00677
append_uint32_fixed
[function]
[call site]
00678
decode_token_int
[function]
[call site]
00679
append_uint32_var
[function]
[call site]
00680
decode_token_int1
[function]
[call site]
00681
append_uint32_var
[function]
[call site]
00682
append_uint32_var
[function]
[call site]
00683
append_uint32_fixed
[function]
[call site]
00684
realloc
[call site]
00685
free_context
[function]
[call site]
00686
pool_destroy
[function]
[call site]
00687
htscodecs_tls_free
[function]
[call site]
00688
free_context
[function]
[call site]
00689
cram_free_container
[function]
[call site]
00690
cram_free_block
[function]
[call site]
00691
int32_get_blk
[function]
[call site]
00692
cram_free_container
[function]
[call site]
00693
cram_free_block
[function]
[call site]
00694
cram_free_container
[function]
[call site]
00695
cram_free_block
[function]
[call site]
00696
cram_free_block
[function]
[call site]
00697
cram_read_block
[function]
[call site]
00698
cram_free_container
[function]
[call site]
00699
cram_free_block
[function]
[call site]
00700
cram_free_container
[function]
[call site]
00701
hread
[function]
[call site]
00702
cram_free_container
[function]
[call site]
00703
cram_free_container
[function]
[call site]
00704
sam_hdr_init
[function]
[call site]
00705
calloc
[call site]
00706
sam_hdr_add_lines
[function]
[call site]
00707
sam_hdr_fill_hrecs
[function]
[call site]
00708
sam_hrecs_new
[function]
[call site]
00709
calloc
[call site]
00710
kh_init_sam_hrecs_t
[function]
[call site]
00711
calloc
[call site]
00712
kh_init_m_s2i
[function]
[call site]
00713
calloc
[call site]
00714
kh_init_m_s2i
[function]
[call site]
00715
kh_init_m_s2i
[function]
[call site]
00716
pool_create
[function]
[call site]
00717
next_power_2
[function]
[call site]
00718
pool_create
[function]
[call site]
00719
string_pool_create
[function]
[call site]
00720
sam_hrecs_init_type_order
[function]
[call site]
00721
calloc
[call site]
00722
kh_destroy_sam_hrecs_t
[function]
[call site]
00723
pool_destroy
[function]
[call site]
00724
pool_destroy
[function]
[call site]
00725
string_pool_destroy
[function]
[call site]
00726
sam_hrecs_refs_from_targets_array
[function]
[call site]
00727
hts_log
[function]
[call site]
00728
realloc
[call site]
00729
kh_grow_to_fit_m_s2i
[function]
[call site]
00730
kh_resize_m_s2i
[function]
[call site]
00731
realloc
[call site]
00732
__ac_FNV1a_hash_string
[function]
[call site]
00733
string_dup
[function]
[call site]
00734
strlen
[call site]
00735
string_ndup
[function]
[call site]
00736
string_alloc
[function]
[call site]
00737
new_string_pool
[function]
[call site]
00738
realloc
[call site]
00739
kh_get_s2i
[function]
[call site]
00740
__ac_FNV1a_hash_string
[function]
[call site]
00741
strcmp
[call site]
00742
kh_put_m_s2i
[function]
[call site]
00743
strcmp
[call site]
00744
hts_log
[function]
[call site]
00745
__errno_location
[call site]
00746
strerror
[call site]
00747
hts_log
[function]
[call site]
00748
kh_get_m_s2i
[function]
[call site]
00749
kh_del_m_s2i
[function]
[call site]
00750
sam_hrecs_free
[function]
[call site]
00751
kh_destroy_sam_hrecs_t
[function]
[call site]
00752
kh_destroy_m_s2i
[function]
[call site]
00753
kh_destroy_m_s2i
[function]
[call site]
00754
kh_destroy_m_s2i
[function]
[call site]
00755
pool_destroy
[function]
[call site]
00756
pool_destroy
[function]
[call site]
00757
string_pool_destroy
[function]
[call site]
00758
sam_hrecs_parse_lines
[function]
[call site]
00759
strlen
[call site]
00760
sam_hrecs_error
[function]
[call site]
00761
hts_log
[function]
[call site]
00762
sam_hrecs_parse_single_line
[function]
[call site]
00763
sam_hrecs_error
[function]
[call site]
00764
isalpha_c
[function]
[call site]
00765
__ctype_b_loc
[call site]
00766
sam_hrecs_error
[function]
[call site]
00767
TYPEKEY
[function]
[call site]
00768
pool_alloc
[function]
[call site]
00769
new_pool
[function]
[call site]
00770
realloc
[call site]
00771
kh_put_sam_hrecs_t
[function]
[call site]
00772
kh_resize_sam_hrecs_t
[function]
[call site]
00773
realloc
[call site]
00774
TYPEKEY
[function]
[call site]
00775
parse_comment_line
[function]
[call site]
00776
sam_hrecs_error
[function]
[call site]
00777
warn_if_known_stderr
[function]
[call site]
00778
kmemmem
[function]
[call site]
00779
ksBM_prep
[function]
[call site]
00780
calloc
[call site]
00781
calloc
[call site]
00782
known_stderr
[function]
[call site]
00783
hts_log
[function]
[call site]
00784
hts_log
[function]
[call site]
00785
kmemmem
[function]
[call site]
00786
known_stderr
[function]
[call site]
00787
kmemmem
[function]
[call site]
00788
known_stderr
[function]
[call site]
00789
pool_alloc
[function]
[call site]
00790
string_ndup
[function]
[call site]
00791
parse_noncomment_line
[function]
[call site]
00792
TYPEKEY
[function]
[call site]
00793
sam_hrecs_error
[function]
[call site]
00794
warn_if_known_stderr
[function]
[call site]
00795
sam_hrecs_error
[function]
[call site]
00796
warn_if_known_stderr
[function]
[call site]
00797
pool_alloc
[function]
[call site]
00798
string_ndup
[function]
[call site]
00799
sam_hrecs_global_list_add
[function]
[call site]
00800
TYPEKEY
[function]
[call site]
00801
__assert_fail
[call site]
00802
sam_hrecs_free_tags
[function]
[call site]
00803
sam_hrecs_free_tags
[function]
[call site]
00804
pool_free
[function]
[call site]
00805
pool_free
[function]
[call site]
00806
TYPEKEY
[function]
[call site]
00807
kh_grow_to_fit_m_s2i
[function]
[call site]
00808
realloc
[call site]
00809
sam_hrecs_update_hashes
[function]
[call site]
00810
TYPEKEY
[function]
[call site]
00811
__assert_fail
[call site]
00812
__assert_fail
[call site]
00813
strtoll
[call site]
00814
__assert_fail
[call site]
00815
hts_log
[function]
[call site]
00816
hts_log
[function]
[call site]
00817
hts_log
[function]
[call site]
00818
kh_get_m_s2i
[function]
[call site]
00819
snprintf
[call site]
00820
sam_hrecs_update
[function]
[call site]
00821
sam_hrecs_vupdate
[function]
[call site]
00822
sam_hrecs_find_key
[function]
[call site]
00823
pool_alloc
[function]
[call site]
00824
strlen
[call site]
00825
string_alloc
[function]
[call site]
00826
snprintf
[call site]
00827
sam_hrecs_add_ref_altnames
[function]
[call site]
00828
kstrtok
[function]
[call site]
00829
strchr
[call site]
00830
strlen
[call site]
00831
string_ndup
[function]
[call site]
00832
kh_put_m_s2i
[function]
[call site]
00833
hts_log
[function]
[call site]
00834
strcmp
[call site]
00835
sam_hrecs_add_ref_altnames
[function]
[call site]
00836
strcmp
[call site]
00837
hts_log
[function]
[call site]
00838
hts_log
[function]
[call site]
00839
realloc
[call site]
00840
kh_put_m_s2i
[function]
[call site]
00841
sam_hrecs_add_ref_altnames
[function]
[call site]
00842
TYPEKEY
[function]
[call site]
00843
sam_hrecs_find_key
[function]
[call site]
00844
hts_log
[function]
[call site]
00845
__assert_fail
[call site]
00846
kh_get_m_s2i
[function]
[call site]
00847
__assert_fail
[call site]
00848
hts_log
[function]
[call site]
00849
realloc
[call site]
00850
kh_put_m_s2i
[function]
[call site]
00851
TYPEKEY
[function]
[call site]
00852
realloc
[call site]
00853
__assert_fail
[call site]
00854
hts_log
[function]
[call site]
00855
kh_get_m_s2i
[function]
[call site]
00856
kh_put_m_s2i
[function]
[call site]
00857
realloc
[call site]
00858
sam_hrecs_free
[function]
[call site]
00859
add_stub_ref_sq_lines
[function]
[call site]
00860
snprintf
[call site]
00861
sam_hrecs_add
[function]
[call site]
00862
sam_hrecs_vadd
[function]
[call site]
00863
TYPEKEY
[function]
[call site]
00864
strncmp
[call site]
00865
sam_hrecs_find_type_id
[function]
[call site]
00866
kh_get_m_s2i
[function]
[call site]
00867
kh_get_m_s2i
[function]
[call site]
00868
kh_get_m_s2i
[function]
[call site]
00869
TYPEKEY
[function]
[call site]
00870
kh_get_sam_hrecs_t
[function]
[call site]
00871
sam_hrecs_vupdate
[function]
[call site]
00872
pool_alloc
[function]
[call site]
00873
kh_put_sam_hrecs_t
[function]
[call site]
00874
__assert_fail
[call site]
00875
sam_hrecs_global_list_add
[function]
[call site]
00876
__assert_fail
[call site]
00877
__assert_fail
[call site]
00878
__assert_fail
[call site]
00879
__assert_fail
[call site]
00880
strncmp
[call site]
00881
pool_alloc
[function]
[call site]
00882
strncmp
[call site]
00883
strlen
[call site]
00884
string_alloc
[function]
[call site]
00885
snprintf
[call site]
00886
strlen
[call site]
00887
string_ndup
[function]
[call site]
00888
strncmp
[call site]
00889
pool_alloc
[function]
[call site]
00890
strncmp
[call site]
00891
strlen
[call site]
00892
string_alloc
[function]
[call site]
00893
snprintf
[call site]
00894
strlen
[call site]
00895
string_ndup
[function]
[call site]
00896
TYPEKEY
[function]
[call site]
00897
sam_hrecs_update_hashes
[function]
[call site]
00898
strncmp
[call site]
00899
hts_log
[function]
[call site]
00900
sam_hrecs_free
[function]
[call site]
00901
rebuild_target_arrays
[function]
[call site]
00902
sam_hdr_update_target_arrays
[function]
[call site]
00903
realloc
[call site]
00904
realloc
[call site]
00905
strcmp
[call site]
00906
strdup
[call site]
00907
kh_get_s2i
[function]
[call site]
00908
kh_del_s2i
[function]
[call site]
00909
kh_init_s2i
[function]
[call site]
00910
calloc
[call site]
00911
kh_put_s2i
[function]
[call site]
00912
kh_resize_s2i
[function]
[call site]
00913
realloc
[call site]
00914
kh_get_s2i
[function]
[call site]
00915
kh_del_s2i
[function]
[call site]
00916
sam_hrecs_parse_lines
[function]
[call site]
00917
rebuild_target_arrays
[function]
[call site]
00918
redact_header_text
[function]
[call site]
00919
__assert_fail
[call site]
00920
sam_hdr_destroy
[function]
[call site]
00921
sam_hrecs_free
[function]
[call site]
00922
kh_destroy_s2i
[function]
[call site]
00923
cram_free_file_def
[function]
[call site]
00924
calloc
[call site]
00925
strncpy
[call site]
00926
cram_init_tables
[function]
[call site]
00927
strrchr
[call site]
00928
strdup
[call site]
00929
refs_create
[function]
[call site]
00930
calloc
[call site]
00931
string_pool_create
[function]
[call site]
00932
kh_init_refs
[function]
[call site]
00933
calloc
[call site]
00934
pthread_mutex_init
[call site]
00935
refs_free
[function]
[call site]
00936
string_pool_destroy
[function]
[call site]
00937
ref_entry_free_seq
[function]
[call site]
00938
mfclose
[function]
[call site]
00939
mfflush
[function]
[call site]
00940
fwrite
[call site]
00941
fflush
[call site]
00942
fseek
[call site]
00943
fwrite
[call site]
00944
fflush
[call site]
00945
ftell
[call site]
00946
fileno
[call site]
00947
ftell
[call site]
00948
ftruncate
[call site]
00949
munmap
[call site]
00950
fclose
[call site]
00951
mfdestroy
[function]
[call site]
00952
kh_destroy_refs
[function]
[call site]
00953
bgzf_close
[function]
[call site]
00954
bgzf_flush
[function]
[call site]
00955
mt_queue
[function]
[call site]
00956
pthread_mutex_lock
[call site]
00957
pool_alloc
[function]
[call site]
00958
pthread_mutex_unlock
[call site]
00959
hts_tpool_dispatch3
[function]
[call site]
00960
pthread_mutex_lock
[call site]
00961
pthread_mutex_unlock
[call site]
00962
__errno_location
[call site]
00963
pthread_mutex_unlock
[call site]
00964
pthread_cond_wait
[call site]
00965
pthread_mutex_unlock
[call site]
00966
wake_next_worker
[function]
[call site]
00967
pthread_mutex_lock
[call site]
00968
__assert_fail
[call site]
00969
__assert_fail
[call site]
00970
pthread_cond_signal
[call site]
00971
pthread_mutex_unlock
[call site]
00972
pthread_mutex_unlock
[call site]
00973
bgzf_encode_level0_func
[function]
[call site]
00974
u16_to_le
[function]
[call site]
00975
u16_to_le
[function]
[call site]
00976
u16_to_le
[function]
[call site]
00977
hts_crc32
[function]
[call site]
00978
crc32
[call site]
00979
u32_to_le
[function]
[call site]
00980
u32_to_le
[function]
[call site]
00981
job_cleanup
[function]
[call site]
00982
pthread_mutex_lock
[call site]
00983
pool_free
[function]
[call site]
00984
pthread_mutex_unlock
[call site]
00985
hts_tpool_dispatch3
[function]
[call site]
00986
bgzf_encode_func
[function]
[call site]
00987
bgzf_compress
[function]
[call site]
00988
u16_to_le
[function]
[call site]
00989
u16_to_le
[function]
[call site]
00990
deflateInit2_
[call site]
00991
bgzf_zerr
[function]
[call site]
00992
hts_log
[function]
[call site]
00993
deflate
[call site]
00994
deflateEnd
[call site]
00995
bgzf_zerr
[function]
[call site]
00996
hts_log
[function]
[call site]
00997
deflateEnd
[call site]
00998
deflateEnd
[call site]
00999
bgzf_zerr
[function]
[call site]
01000
hts_log
[function]
[call site]
01001
packInt16
[function]
[call site]
01002
crc32
[call site]
01003
packInt32
[function]
[call site]
01004
packInt32
[function]
[call site]
01005
job_cleanup
[function]
[call site]
01006
job_cleanup
[function]
[call site]
01007
pthread_mutex_lock
[call site]
01008
pthread_mutex_unlock
[call site]
01009
mt_flush_queue
[function]
[call site]
01010
pthread_mutex_lock
[call site]
01011
hts_tpool_process_is_shutdown
[function]
[call site]
01012
pthread_mutex_lock
[call site]
01013
pthread_mutex_unlock
[call site]
01014
pthread_mutex_unlock
[call site]
01015
hts_usleep
[function]
[call site]
01016
nanosleep
[call site]
01017
pthread_mutex_lock
[call site]
01018
pthread_mutex_unlock
[call site]
01019
hts_tpool_process_flush
[function]
[call site]
01020
pthread_mutex_lock
[call site]
01021
pthread_cond_signal
[call site]
01022
pthread_cond_wait
[call site]
01023
gettimeofday
[call site]
01024
pthread_cond_timedwait
[call site]
01025
gettimeofday
[call site]
01026
pthread_cond_timedwait
[call site]
01027
pthread_mutex_unlock
[call site]
01028
pthread_mutex_lock
[call site]
01029
pthread_mutex_unlock
[call site]
01030
hflush
[function]
[call site]
01031
flush_buffer
[function]
[call site]
01032
__errno_location
[call site]
01033
bgzf_index_add_block
[function]
[call site]
01034
realloc
[call site]
01035
deflate_block
[function]
[call site]
01036
bgzf_compress
[function]
[call site]
01037
bgzf_gzip_compress
[function]
[call site]
01038
deflate
[call site]
01039
bgzf_zerr
[function]
[call site]
01040
hts_log
[function]
[call site]
01041
hts_log
[function]
[call site]
01042
hts_log
[function]
[call site]
01043
bgzf_zerr
[function]
[call site]
01044
hts_log
[function]
[call site]
01045
hwrite
[function]
[call site]
01046
hfile_set_blksize
[function]
[call site]
01047
realloc
[call site]
01048
hwrite2
[function]
[call site]
01049
flush_buffer
[function]
[call site]
01050
__errno_location
[call site]
01051
hwrite2
[function]
[call site]
01052
hts_log
[function]
[call site]
01053
bgzf_close_mt
[function]
[call site]
01054
mt_destroy
[function]
[call site]
01055
pthread_mutex_lock
[call site]
01056
pthread_cond_signal
[call site]
01057
hts_tpool_wake_dispatch
[function]
[call site]
01058
pthread_mutex_lock
[call site]
01059
pthread_cond_signal
[call site]
01060
pthread_mutex_unlock
[call site]
01061
pthread_mutex_unlock
[call site]
01062
hts_tpool_process_is_shutdown
[function]
[call site]
01063
hts_tpool_process_destroy
[function]
[call site]
01064
pthread_mutex_lock
[call site]
01065
pthread_mutex_unlock
[call site]
01066
hts_tpool_process_reset
[function]
[call site]
01067
pthread_mutex_lock
[call site]
01068
pthread_mutex_unlock
[call site]
01069
hts_tpool_delete_result
[function]
[call site]
01070
hts_tpool_process_flush
[function]
[call site]
01071
pthread_mutex_lock
[call site]
01072
pthread_cond_signal
[call site]
01073
pthread_mutex_unlock
[call site]
01074
hts_tpool_delete_result
[function]
[call site]
01075
pthread_mutex_lock
[call site]
01076
hts_tpool_process_detach_locked
[function]
[call site]
01077
hts_tpool_process_shutdown_locked
[function]
[call site]
01078
pthread_cond_broadcast
[call site]
01079
pthread_cond_broadcast
[call site]
01080
pthread_cond_broadcast
[call site]
01081
pthread_cond_broadcast
[call site]
01082
pthread_mutex_unlock
[call site]
01083
pthread_cond_destroy
[call site]
01084
pthread_cond_destroy
[call site]
01085
pthread_cond_destroy
[call site]
01086
pthread_cond_destroy
[call site]
01087
pthread_mutex_unlock
[call site]
01088
pthread_join
[call site]
01089
pthread_mutex_destroy
[call site]
01090
pthread_mutex_destroy
[call site]
01091
pthread_mutex_destroy
[call site]
01092
pthread_cond_destroy
[call site]
01093
pool_free
[function]
[call site]
01094
hts_tpool_destroy
[function]
[call site]
01095
pthread_mutex_lock
[call site]
01096
pthread_cond_signal
[call site]
01097
pthread_mutex_unlock
[call site]
01098
pthread_join
[call site]
01099
pthread_mutex_destroy
[call site]
01100
pthread_cond_destroy
[call site]
01101
pool_destroy
[function]
[call site]
01102
fflush
[call site]
01103
deflate_block
[function]
[call site]
01104
bgzf_zerr
[function]
[call site]
01105
hts_log
[function]
[call site]
01106
bgzf_close_mt
[function]
[call site]
01107
hwrite
[function]
[call site]
01108
hflush
[function]
[call site]
01109
hts_log
[function]
[call site]
01110
bgzf_close_mt
[function]
[call site]
01111
inflateEnd
[call site]
01112
deflateEnd
[call site]
01113
bgzf_zerr
[function]
[call site]
01114
hts_log
[function]
[call site]
01115
hclose
[function]
[call site]
01116
writebuffer_is_nonempty
[function]
[call site]
01117
hflush
[function]
[call site]
01118
__errno_location
[call site]
01119
hfile_destroy
[function]
[call site]
01120
__errno_location
[call site]
01121
bgzf_index_destroy
[function]
[call site]
01122
free_cache
[function]
[call site]
01123
kh_destroy_cache
[function]
[call site]
01124
pthread_mutex_destroy
[call site]
01125
pthread_mutex_init
[call site]
01126
pthread_mutex_init
[call site]
01127
pthread_mutex_init
[call site]
01128
pthread_mutex_init
[call site]
01129
cram_new_metrics
[function]
[call site]
01130
calloc
[call site]
01131
kh_init_m_metrics
[function]
[call site]
01132
calloc
[call site]
01133
refs_from_header
[function]
[call site]
01134
sam_hdr_fill_hrecs
[function]
[call site]
01135
realloc
[call site]
01136
kh_get_refs
[function]
[call site]
01137
__ac_FNV1a_hash_string
[function]
[call site]
01138
strcmp
[call site]
01139
calloc
[call site]
01140
string_dup
[function]
[call site]
01141
sam_hrecs_find_type_id
[function]
[call site]
01142
sam_hrecs_find_key
[function]
[call site]
01143
string_dup
[function]
[call site]
01144
sam_hrecs_find_key
[function]
[call site]
01145
strtoll
[call site]
01146
kh_put_refs
[function]
[call site]
01147
kh_resize_refs
[function]
[call site]
01148
realloc
[call site]
01149
cram_set_option
[function]
[call site]
01150
cram_set_voption
[function]
[call site]
01151
__errno_location
[call site]
01152
strdup
[call site]
01153
refs_free
[function]
[call site]
01154
cram_seek_to_refpos
[function]
[call site]
01155
cram_index_query
[function]
[call site]
01156
cram_seek
[function]
[call site]
01157
cram_drain_rqueue
[function]
[call site]
01158
hts_tpool_process_empty
[function]
[call site]
01159
pthread_mutex_lock
[call site]
01160
pthread_mutex_unlock
[call site]
01161
hts_tpool_next_result_wait
[function]
[call site]
01162
pthread_mutex_lock
[call site]
01163
hts_tpool_next_result_locked
[function]
[call site]
01164
pthread_cond_signal
[call site]
01165
wake_next_worker
[function]
[call site]
01166
gettimeofday
[call site]
01167
pthread_mutex_unlock
[call site]
01168
hts_tpool_process_destroy
[function]
[call site]
01169
pthread_cond_timedwait
[call site]
01170
pthread_mutex_unlock
[call site]
01171
hts_tpool_result_data
[function]
[call site]
01172
cram_free_container
[function]
[call site]
01173
cram_free_slice
[function]
[call site]
01174
hts_tpool_delete_result
[function]
[call site]
01175
cram_free_container
[function]
[call site]
01176
cram_free_slice
[function]
[call site]
01177
cram_free_container
[function]
[call site]
01178
hseek
[function]
[call site]
01179
pthread_mutex_lock
[call site]
01180
pthread_mutex_unlock
[call site]
01181
cram_free_container
[function]
[call site]
01182
cram_free_container
[function]
[call site]
01183
pthread_mutex_lock
[call site]
01184
pthread_mutex_unlock
[call site]
01185
pthread_mutex_lock
[call site]
01186
pthread_mutex_unlock
[call site]
01187
pthread_mutex_lock
[call site]
01188
pthread_mutex_unlock
[call site]
01189
cram_load_reference
[function]
[call site]
01190
refs_load_fai
[function]
[call site]
01191
strlen
[call site]
01192
refs_create
[function]
[call site]
01193
bgzf_close
[function]
[call site]
01194
strstr
[call site]
01195
string_ndup
[function]
[call site]
01196
snprintf
[call site]
01197
strcmp
[call site]
01198
string_ndup
[function]
[call site]
01199
snprintf
[call site]
01200
string_dup
[function]
[call site]
01201
snprintf
[call site]
01202
bgzf_open_ref
[function]
[call site]
01203
strncmp
[call site]
01204
hisremote
[function]
[call site]
01205
find_scheme_handler
[function]
[call site]
01206
snprintf
[call site]
01207
access
[call site]
01208
fai_build
[function]
[call site]
01209
fai_build3
[function]
[call site]
01210
fai_build3_core
[function]
[call site]
01211
bgzf_open
[function]
[call site]
01212
strchr
[call site]
01213
hopen
[function]
[call site]
01214
bgzf_read_init
[function]
[call site]
01215
hclose_abruptly
[function]
[call site]
01216
strchr
[call site]
01217
hopen
[function]
[call site]
01218
bgzf_write_init
[function]
[call site]
01219
__errno_location
[call site]
01220
ed_is_big
[function]
[call site]
01221
__errno_location
[call site]
01222
strerror
[call site]
01223
hts_log
[function]
[call site]
01224
bgzf_index_build_init
[function]
[call site]
01225
bgzf_index_destroy
[function]
[call site]
01226
calloc
[call site]
01227
hts_log
[function]
[call site]
01228
fai_build_core
[function]
[call site]
01229
calloc
[call site]
01230
kh_init_s
[function]
[call site]
01231
calloc
[call site]
01232
bgzf_getc_
[function]
[call site]
01233
bgzf_getc
[function]
[call site]
01234
bgzf_read_block
[function]
[call site]
01235
hts_tpool_next_result_wait
[function]
[call site]
01236
hts_tpool_result_data
[function]
[call site]
01237
mt_destroy
[function]
[call site]
01238
hts_tpool_delete_result
[function]
[call site]
01239
hts_log
[function]
[call site]
01240
hts_tpool_delete_result
[function]
[call site]
01241
hts_log
[function]
[call site]
01242
hts_tpool_delete_result
[function]
[call site]
01243
bgzf_index_add_block
[function]
[call site]
01244
pthread_mutex_lock
[call site]
01245
pool_free
[function]
[call site]
01246
pthread_mutex_unlock
[call site]
01247
hts_tpool_delete_result
[function]
[call site]
01248
bgzf_htell
[function]
[call site]
01249
pthread_mutex_lock
[call site]
01250
pthread_mutex_unlock
[call site]
01251
htell
[function]
[call site]
01252
hread
[function]
[call site]
01253
__errno_location
[call site]
01254
strerror
[call site]
01255
hts_log
[function]
[call site]
01256
inflate_gzip_block
[function]
[call site]
01257
hread
[function]
[call site]
01258
inflate
[call site]
01259
bgzf_zerr
[function]
[call site]
01260
hts_log
[function]
[call site]
01261
hpeek
[function]
[call site]
01262
inflateReset
[call site]
01263
bgzf_zerr
[function]
[call site]
01264
hts_log
[function]
[call site]
01265
hts_log
[function]
[call site]
01266
hts_log
[function]
[call site]
01267
load_block_from_cache
[function]
[call site]
01268
kh_get_cache
[function]
[call site]
01269
hseek
[function]
[call site]
01270
hts_log
[function]
[call site]
01271
exit
[call site]
01272
hread
[function]
[call site]
01273
hts_log
[function]
[call site]
01274
check_header
[function]
[call site]
01275
unpackInt16
[function]
[call site]
01276
unpackInt16
[function]
[call site]
01277
hts_log
[function]
[call site]
01278
hread
[function]
[call site]
01279
calloc
[call site]
01280
inflateInit2_
[call site]
01281
bgzf_zerr
[function]
[call site]
01282
hts_log
[function]
[call site]
01283
inflate_gzip_block
[function]
[call site]
01284
hts_log
[function]
[call site]
01285
unpackInt16
[function]
[call site]
01286
hts_log
[function]
[call site]
01287
hread
[function]
[call site]
01288
hts_log
[function]
[call site]
01289
inflate_block
[function]
[call site]
01290
le_to_u32
[function]
[call site]
01291
bgzf_uncompress
[function]
[call site]
01292
inflateInit2_
[call site]
01293
bgzf_zerr
[function]
[call site]
01294
hts_log
[function]
[call site]
01295
inflate
[call site]
01296
bgzf_zerr
[function]
[call site]
01297
hts_log
[function]
[call site]
01298
inflateEnd
[call site]
01299
bgzf_zerr
[function]
[call site]
01300
hts_log
[function]
[call site]
01301
inflateEnd
[call site]
01302
bgzf_zerr
[function]
[call site]
01303
crc32
[call site]
01304
hts_log
[function]
[call site]
01305
bgzf_zerr
[function]
[call site]
01306
hts_log
[function]
[call site]
01307
bgzf_htell
[function]
[call site]
01308
bgzf_index_add_block
[function]
[call site]
01309
cache_block
[function]
[call site]
01310
kh_del_cache
[function]
[call site]
01311
kh_put_cache
[function]
[call site]
01312
kh_resize_cache
[function]
[call site]
01313
realloc
[call site]
01314
bgzf_htell
[function]
[call site]
01315
hts_log
[function]
[call site]
01316
hts_log
[function]
[call site]
01317
bgzf_getc_
[function]
[call site]
01318
hts_log
[function]
[call site]
01319
__ctype_b_loc
[call site]
01320
hts_log
[function]
[call site]
01321
fai_insert_index
[function]
[call site]
01322
hts_log
[function]
[call site]
01323
strdup
[call site]
01324
kh_put_s
[function]
[call site]
01325
kh_resize_s
[function]
[call site]
01326
realloc
[call site]
01327
__ac_FNV1a_hash_string
[function]
[call site]
01328
strcmp
[call site]
01329
hts_log
[function]
[call site]
01330
realloc
[call site]
01331
hts_log
[function]
[call site]
01332
__ctype_b_loc
[call site]
01333
kputc
[function]
[call site]
01334
bgzf_getc_
[function]
[call site]
01335
kputsn
[function]
[call site]
01336
hts_log
[function]
[call site]
01337
bgzf_getc_
[function]
[call site]
01338
bgzf_utell
[function]
[call site]
01339
bgzf_getc_
[function]
[call site]
01340
bgzf_utell
[function]
[call site]
01341
hts_log
[function]
[call site]
01342
isgraph_
[function]
[call site]
01343
bgzf_getc_
[function]
[call site]
01344
hts_log
[function]
[call site]
01345
bgzf_getc_
[function]
[call site]
01346
bgzf_utell
[function]
[call site]
01347
hts_log
[function]
[call site]
01348
hts_log
[function]
[call site]
01349
isgraph_
[function]
[call site]
01350
bgzf_getc_
[function]
[call site]
01351
hts_log
[function]
[call site]
01352
hts_log
[function]
[call site]
01353
hts_log
[function]
[call site]
01354
fai_insert_index
[function]
[call site]
01355
hts_log
[function]
[call site]
01356
fai_destroy
[function]
[call site]
01357
kh_destroy_s
[function]
[call site]
01358
bgzf_close
[function]
[call site]
01359
hts_log
[function]
[call site]
01360
ksprintf
[function]
[call site]
01361
ksprintf
[function]
[call site]
01362
bgzf_index_dump
[function]
[call site]
01363
hts_log
[function]
[call site]
01364
__errno_location
[call site]
01365
get_name_suffix
[function]
[call site]
01366
strlen
[call site]
01367
snprintf
[call site]
01368
hopen
[function]
[call site]
01369
bgzf_index_dump_hfile
[function]
[call site]
01370
hts_log
[function]
[call site]
01371
__errno_location
[call site]
01372
bgzf_flush
[function]
[call site]
01373
hwrite_uint64
[function]
[call site]
01374
ed_is_big
[function]
[call site]
01375
ed_swap_8
[function]
[call site]
01376
hwrite
[function]
[call site]
01377
hwrite_uint64
[function]
[call site]
01378
hwrite_uint64
[function]
[call site]
01379
__errno_location
[call site]
01380
strerror
[call site]
01381
hts_log
[function]
[call site]
01382
hclose
[function]
[call site]
01383
__errno_location
[call site]
01384
strerror
[call site]
01385
hts_log
[function]
[call site]
01386
hclose_abruptly
[function]
[call site]
01387
hts_log
[function]
[call site]
01388
bgzf_close
[function]
[call site]
01389
__errno_location
[call site]
01390
strerror
[call site]
01391
hts_log
[function]
[call site]
01392
hopen
[function]
[call site]
01393
__errno_location
[call site]
01394
strerror
[call site]
01395
hts_log
[function]
[call site]
01396
fai_save
[function]
[call site]
01397
kh_get_s
[function]
[call site]
01398
__assert_fail
[call site]
01399
snprintf
[call site]
01400
snprintf
[call site]
01401
hputs
[function]
[call site]
01402
strlen
[call site]
01403
hputs2
[function]
[call site]
01404
hwrite2
[function]
[call site]
01405
hputs
[function]
[call site]
01406
__errno_location
[call site]
01407
strerror
[call site]
01408
hts_log
[function]
[call site]
01409
hclose
[function]
[call site]
01410
__errno_location
[call site]
01411
strerror
[call site]
01412
hts_log
[function]
[call site]
01413
fai_destroy
[function]
[call site]
01414
__errno_location
[call site]
01415
bgzf_close
[function]
[call site]
01416
fai_destroy
[function]
[call site]
01417
__errno_location
[call site]
01418
bgzf_open
[function]
[call site]
01419
perror
[call site]
01420
bgzf_index_load
[function]
[call site]
01421
get_name_suffix
[function]
[call site]
01422
hopen
[function]
[call site]
01423
bgzf_index_load_hfile
[function]
[call site]
01424
calloc
[call site]
01425
hread_uint64
[function]
[call site]
01426
hread
[function]
[call site]
01427
ed_is_big
[function]
[call site]
01428
ed_swap_8p
[function]
[call site]
01429
hread_uint64
[function]
[call site]
01430
hread_uint64
[function]
[call site]
01431
__errno_location
[call site]
01432
strerror
[call site]
01433
hts_log
[function]
[call site]
01434
hclose
[function]
[call site]
01435
__errno_location
[call site]
01436
strerror
[call site]
01437
hts_log
[function]
[call site]
01438
hclose_abruptly
[function]
[call site]
01439
hts_log
[function]
[call site]
01440
bgzf_close
[function]
[call site]
01441
hts_log
[function]
[call site]
01442
hopen
[function]
[call site]
01443
hts_log
[function]
[call site]
01444
perror
[call site]
01445
hgets
[function]
[call site]
01446
__errno_location
[call site]
01447
hgetln
[function]
[call site]
01448
hgetdelim
[function]
[call site]
01449
__errno_location
[call site]
01450
writebuffer_is_nonempty
[function]
[call site]
01451
__errno_location
[call site]
01452
memchr
[call site]
01453
refill_buffer
[function]
[call site]
01454
isspace_c
[function]
[call site]
01455
string_dup
[function]
[call site]
01456
isspace_c
[function]
[call site]
01457
strtoll
[call site]
01458
isspace_c
[function]
[call site]
01459
strtoll
[call site]
01460
isspace_c
[function]
[call site]
01461
strtol
[call site]
01462
isspace_c
[function]
[call site]
01463
strtol
[call site]
01464
kh_put_refs
[function]
[call site]
01465
realloc
[call site]
01466
hclose
[function]
[call site]
01467
hclose_abruptly
[function]
[call site]
01468
refs_free
[function]
[call site]
01469
sanitise_SQ_lines
[function]
[call site]
01470
kh_get_refs
[function]
[call site]
01471
strcmp
[call site]
01472
__assert_fail
[call site]
01473
hts_log
[function]
[call site]
01474
refs_free
[function]
[call site]
01475
refs_create
[function]
[call site]
01476
refs_from_header
[function]
[call site]
01477
refs2id
[function]
[call site]
01478
calloc
[call site]
01479
kh_get_refs
[function]
[call site]
01480
hts_log
[function]
[call site]
01481
__isoc99_sscanf
[call site]
01482
hts_log
[function]
[call site]
01483
hts_log
[function]
[call site]
01484
__errno_location
[call site]
01485
hts_log
[function]
[call site]
01486
cram_init_tables
[function]
[call site]
01487
hts_tpool_init
[function]
[call site]
01488
pthread_mutexattr_init
[call site]
01489
pthread_mutexattr_settype
[call site]
01490
pthread_mutex_init
[call site]
01491
pthread_mutexattr_destroy
[call site]
01492
pthread_mutex_lock
[call site]
01493
pthread_attr_init
[call site]
01494
pthread_attr_getstacksize
[call site]
01495
pthread_attr_setstacksize
[call site]
01496
pthread_cond_init
[call site]
01497
pthread_create
[call site]
01498
tpool_worker
[function]
[call site]
01499
pthread_mutex_lock
[call site]
01500
__assert_fail
[call site]
01501
pthread_cond_wait
[call site]
01502
__assert_fail
[call site]
01503
pthread_cond_broadcast
[call site]
01504
pthread_cond_signal
[call site]
01505
pthread_mutex_unlock
[call site]
01506
hts_tpool_add_result
[function]
[call site]
01507
pthread_mutex_lock
[call site]
01508
pthread_cond_signal
[call site]
01509
pthread_mutex_unlock
[call site]
01510
pthread_mutex_unlock
[call site]
01511
hts_tpool_process_shutdown
[function]
[call site]
01512
pthread_mutex_lock
[call site]
01513
hts_tpool_process_shutdown_locked
[function]
[call site]
01514
pthread_mutex_unlock
[call site]
01515
__assert_fail
[call site]
01516
pthread_cond_broadcast
[call site]
01517
pthread_mutex_unlock
[call site]
01518
pthread_mutex_lock
[call site]
01519
hts_tpool_process_destroy
[function]
[call site]
01520
pthread_mutex_unlock
[call site]
01521
pthread_mutex_lock
[call site]
01522
hts_tpool_process_shutdown_locked
[function]
[call site]
01523
pthread_mutex_unlock
[call site]
01524
pthread_mutex_unlock
[call site]
01525
pthread_attr_destroy
[call site]
01526
__errno_location
[call site]
01527
__errno_location
[call site]
01528
strerror
[call site]
01529
hts_log
[function]
[call site]
01530
pthread_mutex_unlock
[call site]
01531
pthread_join
[call site]
01532
pthread_cond_destroy
[call site]
01533
pthread_mutex_destroy
[call site]
01534
pthread_attr_destroy
[call site]
01535
__errno_location
[call site]
01536
hts_tpool_process_init
[function]
[call site]
01537
pthread_cond_init
[call site]
01538
pthread_cond_init
[call site]
01539
pthread_cond_init
[call site]
01540
pthread_cond_init
[call site]
01541
hts_tpool_process_attach
[function]
[call site]
01542
pthread_mutex_lock
[call site]
01543
__assert_fail
[call site]
01544
pthread_mutex_unlock
[call site]
01545
hts_tpool_size
[function]
[call site]
01546
hts_tpool_process_init
[function]
[call site]
01547
hts_log
[function]
[call site]
01548
__errno_location
[call site]
01549
bgzf_hopen
[function]
[call site]
01550
__errno_location
[call site]
01551
hts_process_opts
[function]
[call site]
01552
hts_parse_opt_list
[function]
[call site]
01553
strncpy
[call site]
01554
hts_opt_add
[function]
[call site]
01555
strdup
[call site]
01556
strchr
[call site]
01557
strcmp
[call site]
01558
strcmp
[call site]
01559
atoi
[call site]
01560
strcmp
[call site]
01561
strcmp
[call site]
01562
atoi
[call site]
01563
strcmp
[call site]
01564
strcmp
[call site]
01565
atoi
[call site]
01566
strcmp
[call site]
01567
strcmp
[call site]
01568
atoi
[call site]
01569
strcmp
[call site]
01570
strcmp
[call site]
01571
atoi
[call site]
01572
strcmp
[call site]
01573
strcmp
[call site]
01574
atoi
[call site]
01575
strcmp
[call site]
01576
strcmp
[call site]
01577
atoi
[call site]
01578
strcmp
[call site]
01579
strcmp
[call site]
01580
atoi
[call site]
01581
strcmp
[call site]
01582
strcmp
[call site]
01583
atoi
[call site]
01584
strcmp
[call site]
01585
strcmp
[call site]
01586
atoi
[call site]
01587
strcmp
[call site]
01588
strcmp
[call site]
01589
atoi
[call site]
01590
strcmp
[call site]
01591
strcmp
[call site]
01592
atoi
[call site]
01593
strcmp
[call site]
01594
strcmp
[call site]
01595
atoi
[call site]
01596
strcmp
[call site]
01597
strcmp
[call site]
01598
atoi
[call site]
01599
strcmp
[call site]
01600
atoi
[call site]
01601
strcmp
[call site]
01602
strcmp
[call site]
01603
strcmp
[call site]
01604
strcmp
[call site]
01605
strcmp
[call site]
01606
strcmp
[call site]
01607
strcmp
[call site]
01608
strcmp
[call site]
01609
strcmp
[call site]
01610
strcmp
[call site]
01611
strcmp
[call site]
01612
strcmp
[call site]
01613
strcmp
[call site]
01614
strcmp
[call site]
01615
atoi
[call site]
01616
strcmp
[call site]
01617
strcmp
[call site]
01618
atoi
[call site]
01619
strcmp
[call site]
01620
strcmp
[call site]
01621
strtol
[call site]
01622
hts_log
[function]
[call site]
01623
strcmp
[call site]
01624
strcmp
[call site]
01625
strtol
[call site]
01626
strcmp
[call site]
01627
strcmp
[call site]
01628
strtol
[call site]
01629
strcmp
[call site]
01630
strcmp
[call site]
01631
strcmp
[call site]
01632
strcmp
[call site]
01633
atoi
[call site]
01634
strcmp
[call site]
01635
strcmp
[call site]
01636
atoi
[call site]
01637
strcmp
[call site]
01638
strcmp
[call site]
01639
strtol
[call site]
01640
strcmp
[call site]
01641
strcmp
[call site]
01642
strtol
[call site]
01643
strcmp
[call site]
01644
strcmp
[call site]
01645
strcmp
[call site]
01646
strcmp
[call site]
01647
strcmp
[call site]
01648
strcmp
[call site]
01649
strcmp
[call site]
01650
strcmp
[call site]
01651
strcmp
[call site]
01652
strcmp
[call site]
01653
strcmp
[call site]
01654
strcmp
[call site]
01655
hts_log
[function]
[call site]
01656
hts_opt_apply
[function]
[call site]
01657
strdup
[call site]
01658
hts_set_opt
[function]
[call site]
01659
hts_set_threads
[function]
[call site]
01660
sam_set_threads
[function]
[call site]
01661
hts_tpool_init
[function]
[call site]
01662
sam_set_thread_pool
[function]
[call site]
01663
sam_state_create
[function]
[call site]
01664
calloc
[call site]
01665
pthread_mutex_init
[call site]
01666
pthread_mutex_init
[call site]
01667
pthread_cond_init
[call site]
01668
hts_tpool_size
[function]
[call site]
01669
hts_tpool_process_init
[function]
[call site]
01670
sam_state_destroy
[function]
[call site]
01671
pthread_mutex_lock
[call site]
01672
pthread_cond_signal
[call site]
01673
hts_tpool_wake_dispatch
[function]
[call site]
01674
hts_tpool_wake_dispatch
[function]
[call site]
01675
pthread_mutex_unlock
[call site]
01676
hts_usleep
[function]
[call site]
01677
pthread_mutex_lock
[call site]
01678
pthread_mutex_unlock
[call site]
01679
hts_tpool_dispatch
[function]
[call site]
01680
hts_tpool_dispatch3
[function]
[call site]
01681
sam_format_worker
[function]
[call site]
01682
pthread_mutex_lock
[call site]
01683
pthread_mutex_unlock
[call site]
01684
calloc
[call site]
01685
sam_state_err
[function]
[call site]
01686
pthread_mutex_lock
[call site]
01687
pthread_mutex_unlock
[call site]
01688
sam_format1_append
[function]
[call site]
01689
kputsn_
[function]
[call site]
01690
__errno_location
[call site]
01691
ks_resize
[function]
[call site]
01692
kputc_
[function]
[call site]
01693
ks_resize
[function]
[call site]
01694
kputw
[function]
[call site]
01695
ks_resize
[function]
[call site]
01696
kputuw
[function]
[call site]
01697
ks_resize
[function]
[call site]
01698
ks_resize
[function]
[call site]
01699
kputc_
[function]
[call site]
01700
kputs
[function]
[call site]
01701
kputc_
[function]
[call site]
01702
kputsn_
[function]
[call site]
01703
kputll
[function]
[call site]
01704
ks_resize
[function]
[call site]
01705
kputuw
[function]
[call site]
01706
kputc_
[function]
[call site]
01707
kputw
[function]
[call site]
01708
kputc_
[function]
[call site]
01709
kputw
[function]
[call site]
01710
kputc_
[function]
[call site]
01711
kputc_
[function]
[call site]
01712
kputc_
[function]
[call site]
01713
kputsn_
[function]
[call site]
01714
kputsn_
[function]
[call site]
01715
kputs
[function]
[call site]
01716
kputc_
[function]
[call site]
01717
kputll
[function]
[call site]
01718
kputc_
[function]
[call site]
01719
kputll
[function]
[call site]
01720
kputc_
[function]
[call site]
01721
ks_resize
[function]
[call site]
01722
nibble2base
[function]
[call site]
01723
add33
[function]
[call site]
01724
kputsn_
[function]
[call site]
01725
kputc_
[function]
[call site]
01726
sam_format_aux1
[function]
[call site]
01727
kputsn_
[function]
[call site]
01728
kputc_
[function]
[call site]
01729
kputsn_
[function]
[call site]
01730
kputw
[function]
[call site]
01731
kputsn_
[function]
[call site]
01732
kputw
[function]
[call site]
01733
kputsn_
[function]
[call site]
01734
le_to_u16
[function]
[call site]
01735
kputuw
[function]
[call site]
01736
kputsn_
[function]
[call site]
01737
le_to_i16
[function]
[call site]
01738
le_to_u16
[function]
[call site]
01739
kputw
[function]
[call site]
01740
kputsn_
[function]
[call site]
01741
le_to_u32
[function]
[call site]
01742
kputuw
[function]
[call site]
01743
kputsn_
[function]
[call site]
01744
le_to_i32
[function]
[call site]
01745
le_to_u32
[function]
[call site]
01746
kputw
[function]
[call site]
01747
kputsn_
[function]
[call site]
01748
kputc_
[function]
[call site]
01749
le_to_float
[function]
[call site]
01750
le_to_u32
[function]
[call site]
01751
ksprintf
[function]
[call site]
01752
le_to_double
[function]
[call site]
01753
le_to_u64
[function]
[call site]
01754
ksprintf
[function]
[call site]
01755
kputc_
[function]
[call site]
01756
kputc_
[function]
[call site]
01757
kputc_
[function]
[call site]
01758
kputsn
[function]
[call site]
01759
le_to_u32
[function]
[call site]
01760
kputsn_
[function]
[call site]
01761
kputc
[function]
[call site]
01762
ks_expand
[function]
[call site]
01763
__errno_location
[call site]
01764
ks_resize
[function]
[call site]
01765
kputw
[function]
[call site]
01766
ks_expand
[function]
[call site]
01767
kputuw
[function]
[call site]
01768
ks_expand
[function]
[call site]
01769
le_to_i16
[function]
[call site]
01770
kputw
[function]
[call site]
01771
ks_expand
[function]
[call site]
01772
le_to_u16
[function]
[call site]
01773
kputuw
[function]
[call site]
01774
ks_expand
[function]
[call site]
01775
le_to_i32
[function]
[call site]
01776
kputw
[function]
[call site]
01777
ks_expand
[function]
[call site]
01778
le_to_u32
[function]
[call site]
01779
kputuw
[function]
[call site]
01780
ks_expand
[function]
[call site]
01781
le_to_float
[function]
[call site]
01782
kputd
[function]
[call site]
01783
__errno_location
[call site]
01784
hts_log
[function]
[call site]
01785
__errno_location
[call site]
01786
kputsn
[function]
[call site]
01787
hts_log
[function]
[call site]
01788
__errno_location
[call site]
01789
hts_log
[function]
[call site]
01790
__errno_location
[call site]
01791
__errno_location
[call site]
01792
sam_state_err
[function]
[call site]
01793
kputc
[function]
[call site]
01794
pthread_mutex_lock
[call site]
01795
pthread_mutex_unlock
[call site]
01796
hts_tpool_process_flush
[function]
[call site]
01797
pthread_mutex_lock
[call site]
01798
pthread_mutex_unlock
[call site]
01799
hts_tpool_process_empty
[function]
[call site]
01800
hts_usleep
[function]
[call site]
01801
pthread_mutex_lock
[call site]
01802
hts_tpool_process_is_shutdown
[function]
[call site]
01803
pthread_mutex_unlock
[call site]
01804
hts_tpool_process_shutdown
[function]
[call site]
01805
pthread_join
[call site]
01806
hts_tpool_process_destroy
[function]
[call site]
01807
hts_tpool_destroy
[function]
[call site]
01808
pthread_mutex_destroy
[call site]
01809
pthread_mutex_destroy
[call site]
01810
pthread_cond_destroy
[call site]
01811
sam_free_sp_bams
[function]
[call site]
01812
sam_free_sp_bams
[function]
[call site]
01813
bam_hdr_destroy
[function]
[call site]
01814
sam_hdr_destroy
[function]
[call site]
01815
bgzf_thread_pool
[function]
[call site]
01816
calloc
[call site]
01817
hts_tpool_size
[function]
[call site]
01818
hts_tpool_process_init
[function]
[call site]
01819
hts_tpool_process_ref_incr
[function]
[call site]
01820
pthread_mutex_lock
[call site]
01821
pthread_mutex_unlock
[call site]
01822
pool_create
[function]
[call site]
01823
pthread_mutex_init
[call site]
01824
pthread_mutex_init
[call site]
01825
pthread_mutex_init
[call site]
01826
pthread_cond_init
[call site]
01827
pthread_create
[call site]
01828
hts_get_bgzfp
[function]
[call site]
01829
bgzf_mt
[function]
[call site]
01830
hts_tpool_init
[function]
[call site]
01831
bgzf_thread_pool
[function]
[call site]
01832
hts_tpool_destroy
[function]
[call site]
01833
hts_set_opt
[function]
[call site]
01834
hts_hfile
[function]
[call site]
01835
bgzf_hfile
[function]
[call site]
01836
cram_hfile
[function]
[call site]
01837
bgzf_hfile
[function]
[call site]
01838
hfile_set_blksize
[function]
[call site]
01839
hts_log
[function]
[call site]
01840
hts_log
[function]
[call site]
01841
hts_set_thread_pool
[function]
[call site]
01842
sam_set_thread_pool
[function]
[call site]
01843
hts_get_bgzfp
[function]
[call site]
01844
bgzf_thread_pool
[function]
[call site]
01845
hts_set_opt
[function]
[call site]
01846
hts_set_cache_size
[function]
[call site]
01847
hts_get_bgzfp
[function]
[call site]
01848
bgzf_set_cache_size
[function]
[call site]
01849
fastq_state_set
[function]
[call site]
01850
fastq_state_init
[function]
[call site]
01851
calloc
[call site]
01852
strcpy
[call site]
01853
strcmp
[call site]
01854
kh_init_tag
[function]
[call site]
01855
calloc
[call site]
01856
strlen
[call site]
01857
hts_log
[function]
[call site]
01858
kh_put_tag
[function]
[call site]
01859
kh_resize_tag
[function]
[call site]
01860
realloc
[call site]
01861
strncpy
[call site]
01862
fastq_state_set
[function]
[call site]
01863
fastq_state_set
[function]
[call site]
01864
cram_set_option
[function]
[call site]
01865
hts_set_filter_expression
[function]
[call site]
01866
hts_filter_free
[function]
[call site]
01867
regfree
[call site]
01868
hts_filter_init
[function]
[call site]
01869
cram_set_voption
[function]
[call site]
01873
hts_set_opt
[function]
[call site]
01874
hts_opt_free
[function]
[call site]
01875
hts_opt_free
[function]
[call site]
01876
hclose_abruptly
[function]
[call site]
01877
hts_log
[function]
[call site]
01878
hclose_abruptly
[function]
[call site]
01879
hclose
[function]
[call site]
01880
abort
[call site]
01881
hts_close
[function]
[call site]
01882
bgzf_close
[function]
[call site]
01883
cram_eof
[function]
[call site]
01884
hts_log
[function]
[call site]
01885
cram_close
[function]
[call site]
01886
cram_update_curr_slice
[function]
[call site]
01887
cram_flush_container_mt
[function]
[call site]
01888
pthread_mutex_lock
[call site]
01889
reset_metrics
[function]
[call site]
01890
pthread_mutex_unlock
[call site]
01891
hts_tpool_process_flush
[function]
[call site]
01892
pthread_mutex_lock
[call site]
01893
pthread_mutex_unlock
[call site]
01894
cram_flush_container
[function]
[call site]
01895
cram_encode_container
[function]
[call site]
01896
pthread_mutex_lock
[call site]
01897
hts_log
[function]
[call site]
01898
hts_log
[function]
[call site]
01899
pthread_mutex_unlock
[call site]
01900
pthread_mutex_lock
[call site]
01901
pthread_mutex_unlock
[call site]
01902
cram_get_ref
[function]
[call site]
01903
pthread_mutex_lock
[call site]
01904
hts_log
[function]
[call site]
01905
pthread_mutex_unlock
[call site]
01906
hts_log
[function]
[call site]
01907
pthread_mutex_unlock
[call site]
01908
hts_log
[function]
[call site]
01909
pthread_mutex_unlock
[call site]
01910
pthread_mutex_lock
[call site]
01911
hts_log
[function]
[call site]
01912
cram_populate_ref
[function]
[call site]
01913
getenv
[call site]
01914
getenv
[call site]
01915
hts_log
[function]
[call site]
01916
sam_hrecs_find_type_id
[function]
[call site]
01917
sam_hrecs_find_key
[function]
[call site]
01918
hts_log
[function]
[call site]
01919
expand_cache_path
[function]
[call site]
01920
strchr
[call site]
01921
strncpy
[call site]
01922
strlen
[call site]
01923
strcpy
[call site]
01924
strtol
[call site]
01925
strlen
[call site]
01926
strncpy
[call site]
01927
strlen
[call site]
01928
strcpy
[call site]
01929
strlen
[call site]
01930
strcpy
[call site]
01931
stat
[call site]
01932
stat
[call site]
01933
bgzf_open
[function]
[call site]
01934
string_dup
[function]
[call site]
01935
bgzf_close
[function]
[call site]
01936
open_path_mfile
[function]
[call site]
01937
getenv
[call site]
01938
tokenise_search_path
[function]
[call site]
01939
strlen
[call site]
01940
strncmp
[call site]
01941
strncmp
[call site]
01942
strncmp
[call site]
01943
strncmp
[call site]
01944
strncmp
[call site]
01945
strncmp
[call site]
01946
strncmp
[call site]
01947
strncmp
[call site]
01948
strncmp
[call site]
01949
strncmp
[call site]
01950
find_file_url
[function]
[call site]
01951
expand_path
[function]
[call site]
01952
strlen
[call site]
01953
strlen
[call site]
01954
hts_log
[function]
[call site]
01955
strchr
[call site]
01956
strtol
[call site]
01957
hopen
[function]
[call site]
01958
__errno_location
[call site]
01959
__errno_location
[call site]
01960
strerror
[call site]
01961
hts_log
[function]
[call site]
01962
mfcreate
[function]
[call site]
01963
hread
[function]
[call site]
01964
mfwrite
[function]
[call site]
01965
realloc
[call site]
01966
hclose_abruptly
[function]
[call site]
01967
hclose
[function]
[call site]
01968
__errno_location
[call site]
01969
strerror
[call site]
01970
hts_log
[function]
[call site]
01971
mrewind
[function]
[call site]
01972
mfdestroy
[function]
[call site]
01973
strncmp
[call site]
01974
hisremote
[function]
[call site]
01975
find_file_url
[function]
[call site]
01976
find_file_dir
[function]
[call site]
01977
expand_path
[function]
[call site]
01978
is_file
[function]
[call site]
01979
stat
[call site]
01980
mfopen
[function]
[call site]
01981
fopen
[call site]
01982
mfreopen
[function]
[call site]
01983
strchr
[call site]
01984
strchr
[call site]
01985
strchr
[call site]
01986
strchr
[call site]
01987
strchr
[call site]
01988
strchr
[call site]
01989
strchr
[call site]
01990
mfcreate
[function]
[call site]
01991
mfmmap
[function]
[call site]
01992
mfload
[function]
[call site]
01996
stat
[call site]
01997
realloc
[call site]
01998
fread
[call site]
01999
feof
[call site]
02000
fseek
[call site]
02001
mfcreate
[function]
[call site]
02002
hts_log
[function]
[call site]
02003
fseek
[call site]
02004
strlen
[call site]
02005
strcpy
[call site]
02006
strrchr
[call site]
02007
find_file_dir
[function]
[call site]
02008
mfsteal
[function]
[call site]
02009
mfdetach
[function]
[call site]
02010
mfflush
[function]
[call site]
02011
fclose
[call site]
02012
mfdestroy
[function]
[call site]
02013
sam_hrecs_find_key
[function]
[call site]
02014
strstr
[call site]
02015
strncmp
[call site]
02016
hts_log
[function]
[call site]
02017
strncmp
[call site]
02018
bgzf_close
[function]
[call site]
02019
refs_load_fai
[function]
[call site]
02020
sanitise_SQ_lines
[function]
[call site]
02021
bgzf_close
[function]
[call site]
02022
refs2id
[function]
[call site]
02023
expand_cache_path
[function]
[call site]
02024
hts_log
[function]
[call site]
02025
mkdir_prefix
[function]
[call site]
02026
strrchr
[call site]
02027
is_directory
[function]
[call site]
02028
stat
[call site]
02029
mkdir
[call site]
02030
chmod
[call site]
02031
mkdir_prefix
[function]
[call site]
02032
mkdir
[call site]
02033
chmod
[call site]
02034
hts_open_tmpfile
[function]
[call site]
02035
getpid
[call site]
02036
time
[call site]
02037
clock
[call site]
02038
ks_clear
[function]
[call site]
02039
ksprintf
[function]
[call site]
02040
hopen
[function]
[call site]
02041
__errno_location
[call site]
02042
perror
[call site]
02043
hts_md5_init
[function]
[call site]
02044
hts_md5_reset
[function]
[call site]
02045
hclose_abruptly
[function]
[call site]
02046
unlink
[call site]
02047
hts_md5_update
[function]
[call site]
02048
body
[function]
[call site]
02049
body
[function]
[call site]
02050
hts_md5_final
[function]
[call site]
02051
body
[function]
[call site]
02052
body
[function]
[call site]
02053
hts_md5_destroy
[function]
[call site]
02054
hts_md5_hex
[function]
[call site]
02055
strncmp
[call site]
02056
hts_log
[function]
[call site]
02057
hclose_abruptly
[function]
[call site]
02058
unlink
[call site]
02059
hwrite
[function]
[call site]
02060
hclose
[function]
[call site]
02061
chmod
[call site]
02062
rename
[call site]
02063
__errno_location
[call site]
02064
strerror
[call site]
02065
hts_log
[function]
[call site]
02066
unlink
[call site]
02067
hts_log
[function]
[call site]
02068
hts_log
[function]
[call site]
02069
pthread_mutex_unlock
[call site]
02070
pthread_mutex_unlock
[call site]
02071
cram_ref_incr_locked
[function]
[call site]
02072
cram_ref_incr_locked
[function]
[call site]
02073
cram_ref_load
[function]
[call site]
02074
__assert_fail
[call site]
02075
__assert_fail
[call site]
02076
ref_entry_free_seq
[function]
[call site]
02077
strcmp
[call site]
02078
bgzf_close
[function]
[call site]
02079
bgzf_open_ref
[function]
[call site]
02080
load_ref_portion
[function]
[call site]
02081
bgzf_useek
[function]
[call site]
02082
hseek
[function]
[call site]
02083
bgzf_read_block
[function]
[call site]
02084
bgzf_seek_common
[function]
[call site]
02085
pthread_mutex_lock
[call site]
02086
pthread_cond_signal
[call site]
02087
hts_tpool_wake_dispatch
[function]
[call site]
02088
pthread_cond_wait
[call site]
02089
pthread_cond_signal
[call site]
02090
abort
[call site]
02091
__errno_location
[call site]
02092
pthread_mutex_unlock
[call site]
02093
pthread_mutex_unlock
[call site]
02094
hseek
[function]
[call site]
02095
bgzf_read_block
[function]
[call site]
02096
__assert_fail
[call site]
02097
perror
[call site]
02098
bgzf_read
[function]
[call site]
02099
__assert_fail
[call site]
02100
bgzf_read_block
[function]
[call site]
02101
hts_log
[function]
[call site]
02102
bgzf_htell
[function]
[call site]
02103
hts_log
[function]
[call site]
02104
bgzf_htell
[function]
[call site]
02105
perror
[call site]
02106
isspace_c
[function]
[call site]
02107
isspace_c
[function]
[call site]
02108
isspace_c
[function]
[call site]
02109
hts_log
[function]
[call site]
02110
toupper_c
[function]
[call site]
02111
toupper
[call site]
02112
pthread_mutex_unlock
[call site]
02113
pthread_mutex_unlock
[call site]
02114
cram_ref_incr_locked
[function]
[call site]
02115
pthread_mutex_unlock
[call site]
02116
pthread_mutex_unlock
[call site]
02117
pthread_mutex_unlock
[call site]
02118
pthread_mutex_unlock
[call site]
02119
strcmp
[call site]
02120
bgzf_close
[function]
[call site]
02121
bgzf_open_ref
[function]
[call site]
02122
pthread_mutex_unlock
[call site]
02123
pthread_mutex_unlock
[call site]
02124
load_ref_portion
[function]
[call site]
02125
pthread_mutex_unlock
[call site]
02126
pthread_mutex_unlock
[call site]
02127
pthread_mutex_unlock
[call site]
02128
pthread_mutex_unlock
[call site]
02129
hts_log
[function]
[call site]
02130
hts_log
[function]
[call site]
02131
pthread_mutex_lock
[call site]
02132
pthread_mutex_unlock
[call site]
02133
hts_log
[function]
[call site]
02134
hts_log
[function]
[call site]
02135
hts_log
[function]
[call site]
02136
hts_log
[function]
[call site]
02137
pthread_mutex_lock
[call site]
02138
pthread_mutex_unlock
[call site]
02139
validate_md5
[function]
[call site]
02140
sam_hrecs_find_type_id
[function]
[call site]
02141
sam_hrecs_find_key
[function]
[call site]
02142
hts_md5_init
[function]
[call site]
02143
hts_md5_update
[function]
[call site]
02144
hts_md5_final
[function]
[call site]
02145
hts_md5_destroy
[function]
[call site]
02146
hts_md5_hex
[function]
[call site]
02147
strcmp
[call site]
02148
hts_log
[function]
[call site]
02149
hts_log
[function]
[call site]
02150
cram_ref_incr
[function]
[call site]
02151
pthread_mutex_lock
[call site]
02152
cram_ref_incr_locked
[function]
[call site]
02153
pthread_mutex_unlock
[call site]
02154
cram_get_ref
[function]
[call site]
02155
validate_md5
[function]
[call site]
02156
hts_log
[function]
[call site]
02157
__assert_fail
[call site]
02158
lossy_read_names
[function]
[call site]
02159
kh_init_m_s2u64
[function]
[call site]
02160
calloc
[call site]
02161
expected_template_count
[function]
[call site]
02162
bam_aux_get
[function]
[call site]
02163
bam_aux_first
[function]
[call site]
02164
__errno_location
[call site]
02165
skip_aux
[function]
[call site]
02166
aux_type2size
[function]
[call site]
02167
memchr
[call site]
02168
aux_type2size
[function]
[call site]
02169
le_to_u32
[function]
[call site]
02170
bam_aux_next
[function]
[call site]
02171
skip_aux
[function]
[call site]
02172
__errno_location
[call site]
02173
hts_log
[function]
[call site]
02174
__errno_location
[call site]
02175
hts_log
[function]
[call site]
02176
__errno_location
[call site]
02177
bam_data_end
[function]
[call site]
02178
bam_aux2i_end
[function]
[call site]
02179
__errno_location
[call site]
02180
__errno_location
[call site]
02181
__errno_location
[call site]
02182
le_to_i16
[function]
[call site]
02183
le_to_u16
[function]
[call site]
02184
__errno_location
[call site]
02185
le_to_u16
[function]
[call site]
02186
__errno_location
[call site]
02187
le_to_i32
[function]
[call site]
02188
le_to_u32
[function]
[call site]
02189
__errno_location
[call site]
02190
le_to_u32
[function]
[call site]
02191
__errno_location
[call site]
02192
bam_aux_get
[function]
[call site]
02193
kh_put_m_s2u64
[function]
[call site]
02194
kh_resize_m_s2u64
[function]
[call site]
02195
realloc
[call site]
02196
__ac_FNV1a_hash_string
[function]
[call site]
02197
strcmp
[call site]
02198
kh_get_m_s2u64
[function]
[call site]
02199
kh_destroy_m_s2u64
[function]
[call site]
02200
cram_generate_reference
[function]
[call site]
02201
extend_ref
[function]
[call site]
02202
realloc
[call site]
02203
realloc
[call site]
02204
hts_log
[function]
[call site]
02205
cram_add_to_ref
[function]
[call site]
02206
bam_aux_get
[function]
[call site]
02207
cram_add_to_ref_MD
[function]
[call site]
02208
__ctype_b_loc
[call site]
02209
hts_str2uint
[function]
[call site]
02210
extend_ref
[function]
[call site]
02211
next_cigar_op
[function]
[call site]
02212
hts_log
[function]
[call site]
02213
__ctype_b_loc
[call site]
02214
extend_ref
[function]
[call site]
02215
next_cigar_op
[function]
[call site]
02216
hts_log
[function]
[call site]
02217
extend_ref
[function]
[call site]
02218
next_cigar_op
[function]
[call site]
02219
hts_log
[function]
[call site]
02220
extend_ref
[function]
[call site]
02221
hts_log
[function]
[call site]
02222
hts_log
[function]
[call site]
02223
pthread_mutex_lock
[call site]
02224
pthread_mutex_unlock
[call site]
02225
pthread_mutex_lock
[call site]
02226
pthread_mutex_unlock
[call site]
02227
cram_ref_decr
[function]
[call site]
02228
pthread_mutex_lock
[call site]
02229
cram_ref_decr_locked
[function]
[call site]
02230
__assert_fail
[call site]
02231
ref_entry_free_seq
[function]
[call site]
02232
pthread_mutex_unlock
[call site]
02233
cram_get_ref
[function]
[call site]
02234
hts_log
[function]
[call site]
02235
validate_md5
[function]
[call site]
02236
process_one_read
[function]
[call site]
02237
bam_aux_get
[function]
[call site]
02238
bam_aux_get
[function]
[call site]
02239
cram_stats_add
[function]
[call site]
02240
kh_init_m_i2i
[function]
[call site]
02241
calloc
[call site]
02242
kh_put_m_i2i
[function]
[call site]
02243
kh_resize_m_i2i
[function]
[call site]
02244
realloc
[call site]
02245
cram_stats_add
[function]
[call site]
02246
cram_stats_add
[function]
[call site]
02247
block_grow
[function]
[call site]
02248
block_resize
[function]
[call site]
02249
block_resize_exact
[function]
[call site]
02250
realloc
[call site]
02251
block_grow
[function]
[call site]
02252
nibble2base
[function]
[call site]
02253
hts_log
[function]
[call site]
02254
realloc
[call site]
02255
hts_log
[function]
[call site]
02256
kputuw
[function]
[call site]
02257
ks_resize
[function]
[call site]
02258
ks_resize
[function]
[call site]
02259
kputc
[function]
[call site]
02260
ks_resize
[function]
[call site]
02261
cram_add_substitution
[function]
[call site]
02262
cram_stats_add
[function]
[call site]
02263
cram_stats_add
[function]
[call site]
02264
cram_stats_add
[function]
[call site]
02265
block_append_char
[function]
[call site]
02266
block_grow
[function]
[call site]
02267
cram_add_feature
[function]
[call site]
02268
realloc
[call site]
02269
cram_stats_add
[function]
[call site]
02270
cram_stats_add
[function]
[call site]
02271
cram_stats_add
[function]
[call site]
02272
cram_add_bases
[function]
[call site]
02273
cram_add_feature
[function]
[call site]
02274
cram_add_base
[function]
[call site]
02275
cram_stats_add
[function]
[call site]
02276
cram_stats_add
[function]
[call site]
02277
block_append_char
[function]
[call site]
02278
cram_add_feature
[function]
[call site]
02279
cram_add_base
[function]
[call site]
02280
kputuw
[function]
[call site]
02281
kputc_
[function]
[call site]
02282
ks_resize
[function]
[call site]
02283
kputsn
[function]
[call site]
02284
ks_resize
[function]
[call site]
02285
cram_add_deletion
[function]
[call site]
02286
cram_stats_add
[function]
[call site]
02287
cram_add_feature
[function]
[call site]
02288
cram_add_skip
[function]
[call site]
02289
cram_stats_add
[function]
[call site]
02290
cram_add_feature
[function]
[call site]
02291
cram_add_insertion
[function]
[call site]
02292
cram_stats_add
[function]
[call site]
02293
block_append
[function]
[call site]
02294
block_grow
[function]
[call site]
02295
block_append_char
[function]
[call site]
02296
block_append_char
[function]
[call site]
02297
cram_add_feature
[function]
[call site]
02298
cram_add_quality
[function]
[call site]
02299
cram_stats_add
[function]
[call site]
02300
block_append_char
[function]
[call site]
02301
cram_add_feature
[function]
[call site]
02302
cram_add_softclip
[function]
[call site]
02303
block_append
[function]
[call site]
02304
block_append_char
[function]
[call site]
02305
block_append
[function]
[call site]
02306
block_append_char
[function]
[call site]
02307
block_append_char
[function]
[call site]
02308
cram_add_feature
[function]
[call site]
02309
cram_add_quality
[function]
[call site]
02310
cram_add_quality
[function]
[call site]
02311
cram_add_hardclip
[function]
[call site]
02312
cram_stats_add
[function]
[call site]
02313
cram_add_feature
[function]
[call site]
02314
cram_add_pad
[function]
[call site]
02315
cram_stats_add
[function]
[call site]
02316
cram_add_feature
[function]
[call site]
02317
hts_log
[function]
[call site]
02318
hts_log
[function]
[call site]
02319
cram_stats_add
[function]
[call site]
02320
kputuw
[function]
[call site]
02321
cram_stats_add
[function]
[call site]
02322
cram_encode_aux
[function]
[call site]
02323
bam_data_end
[function]
[call site]
02324
hts_log
[function]
[call site]
02325
sam_hrecs_find_rg
[function]
[call site]
02326
kh_get_m_s2i
[function]
[call site]
02327
block_append
[function]
[call site]
02328
hts_log
[function]
[call site]
02329
strncasecmp
[call site]
02330
hts_log
[function]
[call site]
02331
block_append
[function]
[call site]
02332
bam_aux2i_end
[function]
[call site]
02333
hts_log
[function]
[call site]
02334
block_append
[function]
[call site]
02335
block_append
[function]
[call site]
02336
kh_put_m_tagmap
[function]
[call site]
02337
kh_resize_m_tagmap
[function]
[call site]
02338
realloc
[call site]
02339
pthread_mutex_lock
[call site]
02340
kh_put_m_metrics
[function]
[call site]
02341
kh_resize_m_metrics
[function]
[call site]
02342
realloc
[call site]
02343
pthread_mutex_unlock
[call site]
02344
cram_new_metrics
[function]
[call site]
02345
kh_del_m_metrics
[function]
[call site]
02346
pthread_mutex_unlock
[call site]
02347
pthread_mutex_unlock
[call site]
02348
calloc
[call site]
02349
cram_encoder_init
[function]
[call site]
02350
cram_encoding2str
[function]
[call site]
02351
hts_log
[function]
[call site]
02352
cram_encoding2str
[function]
[call site]
02353
hts_log
[function]
[call site]
02354
abort
[call site]
02355
cram_stats_add
[function]
[call site]
02356
cram_stats_encoding
[function]
[call site]
02357
realloc
[call site]
02358
realloc
[call site]
02359
realloc
[call site]
02360
realloc
[call site]
02361
__assert_fail
[call site]
02362
cram_encoder_init
[function]
[call site]
02363
cram_stats_add
[function]
[call site]
02364
cram_stats_encoding
[function]
[call site]
02365
cram_encoder_init
[function]
[call site]
02366
cram_stats_add
[function]
[call site]
02367
cram_stats_encoding
[function]
[call site]
02368
cram_encoder_init
[function]
[call site]
02369
cram_encoder_init
[function]
[call site]
02370
hts_log
[function]
[call site]
02371
pthread_mutex_lock
[call site]
02372
pthread_mutex_unlock
[call site]
02373
cram_new_block
[function]
[call site]
02374
block_append_char
[function]
[call site]
02375
cram_new_block
[function]
[call site]
02376
block_append
[function]
[call site]
02377
cram_new_block
[function]
[call site]
02378
block_append
[function]
[call site]
02379
cram_new_block
[function]
[call site]
02380
block_append
[function]
[call site]
02381
cram_new_block
[function]
[call site]
02382
hts_log
[function]
[call site]
02383
cram_new_block
[function]
[call site]
02384
cram_new_block
[function]
[call site]
02385
hts_log
[function]
[call site]
02386
hts_log
[function]
[call site]
02387
block_append_char
[function]
[call site]
02388
string_ndup
[function]
[call site]
02389
kh_put_m_s2i
[function]
[call site]
02390
kh_resize_m_s2i
[function]
[call site]
02391
__ac_FNV1a_hash_string
[function]
[call site]
02392
cram_stats_add
[function]
[call site]
02393
sam_hrecs_find_rg
[function]
[call site]
02394
cram_stats_add
[function]
[call site]
02395
block_grow
[function]
[call site]
02396
block_grow
[function]
[call site]
02397
cram_stats_add
[function]
[call site]
02398
string_ndup
[function]
[call site]
02399
kh_put_m_s2i
[function]
[call site]
02400
cram_stats_add
[function]
[call site]
02401
cram_stats_add
[function]
[call site]
02402
cram_stats_del
[function]
[call site]
02403
__assert_fail
[call site]
02404
kh_get_m_i2i
[function]
[call site]
02405
kh_del_m_i2i
[function]
[call site]
02406
hts_log
[function]
[call site]
02407
hts_log
[function]
[call site]
02408
cram_stats_del
[function]
[call site]
02409
cram_stats_del
[function]
[call site]
02410
cram_stats_del
[function]
[call site]
02411
cram_stats_add
[function]
[call site]
02412
cram_stats_del
[function]
[call site]
02413
cram_stats_add
[function]
[call site]
02414
cram_stats_add
[function]
[call site]
02415
cram_stats_add
[function]
[call site]
02416
cram_stats_add
[function]
[call site]
02417
cram_stats_add
[function]
[call site]
02418
cram_stats_add
[function]
[call site]
02419
cram_stats_add
[function]
[call site]
02420
cram_stats_add
[function]
[call site]
02421
add_read_names
[function]
[call site]
02422
block_append
[function]
[call site]
02423
block_append
[function]
[call site]
02424
cram_stats_add
[function]
[call site]
02425
calloc
[call site]
02426
__assert_fail
[call site]
02427
cram_ref_decr
[function]
[call site]
02428
pthread_mutex_lock
[call site]
02429
pthread_mutex_unlock
[call site]
02430
cram_stats_encoding
[function]
[call site]
02431
pthread_mutex_lock
[call site]
02432
pthread_mutex_unlock
[call site]
02433
hts_log
[function]
[call site]
02434
hts_md5_init
[function]
[call site]
02435
hts_md5_update
[function]
[call site]
02436
hts_md5_final
[function]
[call site]
02437
hts_md5_destroy
[function]
[call site]
02438
cram_stats_encoding
[function]
[call site]
02439
cram_encoder_init
[function]
[call site]
02440
cram_stats_encoding
[function]
[call site]
02441
cram_encoder_init
[function]
[call site]
02442
cram_stats_encoding
[function]
[call site]
02443
cram_encoder_init
[function]
[call site]
02444
cram_encoder_init
[function]
[call site]
02445
cram_encoder_init
[function]
[call site]
02446
cram_stats_encoding
[function]
[call site]
02447
cram_encoder_init
[function]
[call site]
02448
cram_stats_encoding
[function]
[call site]
02449
cram_encoder_init
[function]
[call site]
02450
cram_stats_encoding
[function]
[call site]
02451
cram_encoder_init
[function]
[call site]
02452
cram_stats_encoding
[function]
[call site]
02453
cram_encoder_init
[function]
[call site]
02454
cram_stats_encoding
[function]
[call site]
02455
cram_encoder_init
[function]
[call site]
02456
cram_stats_encoding
[function]
[call site]
02457
cram_encoder_init
[function]
[call site]
02458
cram_stats_encoding
[function]
[call site]
02459
cram_encoder_init
[function]
[call site]
02460
cram_stats_encoding
[function]
[call site]
02461
cram_encoder_init
[function]
[call site]
02462
cram_stats_encoding
[function]
[call site]
02463
cram_encoder_init
[function]
[call site]
02464
cram_stats_encoding
[function]
[call site]
02465
cram_encoder_init
[function]
[call site]
02466
cram_stats_encoding
[function]
[call site]
02467
cram_encoder_init
[function]
[call site]
02468
cram_stats_encoding
[function]
[call site]
02469
cram_encoder_init
[function]
[call site]
02470
cram_stats_encoding
[function]
[call site]
02471
cram_encoder_init
[function]
[call site]
02472
cram_encoder_init
[function]
[call site]
02473
cram_stats_encoding
[function]
[call site]
02474
cram_encoder_init
[function]
[call site]
02475
cram_stats_encoding
[function]
[call site]
02476
cram_encoder_init
[function]
[call site]
02477
cram_stats_encoding
[function]
[call site]
02478
cram_encoder_init
[function]
[call site]
02479
cram_stats_encoding
[function]
[call site]
02480
cram_encoder_init
[function]
[call site]
02481
cram_stats_encoding
[function]
[call site]
02482
cram_encoder_init
[function]
[call site]
02483
cram_stats_encoding
[function]
[call site]
02484
cram_encoder_init
[function]
[call site]
02485
cram_stats_encoding
[function]
[call site]
02486
cram_encoder_init
[function]
[call site]
02487
cram_stats_encoding
[function]
[call site]
02488
cram_encoder_init
[function]
[call site]
02489
cram_encoder_init
[function]
[call site]
02490
cram_encoder_init
[function]
[call site]
02491
cram_encoder_init
[function]
[call site]
02492
cram_encoder_init
[function]
[call site]
02493
hts_log
[function]
[call site]
02494
cram_encode_slice
[function]
[call site]
02495
calloc
[call site]
02496
cram_new_block
[function]
[call site]
02497
cram_new_block
[function]
[call site]
02498
cram_new_block
[function]
[call site]
02499
block_append
[function]
[call site]
02500
cram_allocate_block
[function]
[call site]
02501
cram_new_block
[function]
[call site]
02502
cram_new_block
[function]
[call site]
02503
cram_allocate_block
[function]
[call site]
02504
cram_allocate_block
[function]
[call site]
02505
cram_allocate_block
[function]
[call site]
02506
cram_allocate_block
[function]
[call site]
02507
cram_allocate_block
[function]
[call site]
02508
cram_new_block
[function]
[call site]
02509
cram_allocate_block
[function]
[call site]
02510
cram_new_block
[function]
[call site]
02511
cram_encode_slice_read
[function]
[call site]
02512
hts_log
[function]
[call site]
02513
cram_free_block
[function]
[call site]
02514
cram_free_block
[function]
[call site]
02515
cram_free_block
[function]
[call site]
02516
cram_free_block
[function]
[call site]
02517
cram_compress_slice
[function]
[call site]
02518
cram_compress_block2
[function]
[call site]
02519
cram_compress_block3
[function]
[call site]
02520
pthread_mutex_lock
[call site]
02521
pthread_mutex_unlock
[call site]
02522
cram_compress_by_method
[function]
[call site]
02523
zlib_mem_deflate
[function]
[call site]
02524
deflateInit2_
[call site]
02525
hts_log
[function]
[call site]
02526
hts_log
[function]
[call site]
02527
deflate
[call site]
02528
hts_log
[function]
[call site]
02529
deflate
[call site]
02530
hts_log
[function]
[call site]
02531
deflateEnd
[call site]
02532
hts_log
[function]
[call site]
02533
BZ2_bzBuffToBuffCompress
[call site]
02534
fqz_compress
[function]
[call site]
02535
compress_block_fqz2f
[function]
[call site]
02536
fqz_pick_parameters
[function]
[call site]
02537
calloc
[call site]
02538
fqz_qual_stats
[function]
[call site]
02539
calloc
[call site]
02540
memcmp
[call site]
02541
fast_log
[function]
[call site]
02542
fast_log
[function]
[call site]
02543
fast_log
[function]
[call site]
02544
fast_log
[function]
[call site]
02545
fast_log
[function]
[call site]
02546
fast_log
[function]
[call site]
02547
fast_log
[function]
[call site]
02548
log
[call site]
02549
log
[call site]
02550
log
[call site]
02551
log
[call site]
02552
log
[call site]
02553
log
[call site]
02554
log
[call site]
02555
log
[call site]
02556
log
[call site]
02557
var_put_u32
[function]
[call site]
02558
var_put_u32_safe
[function]
[call site]
02559
fqz_store_parameters
[function]
[call site]
02560
store_array
[function]
[call site]
02561
fqz_store_parameters1
[function]
[call site]
02562
store_array
[function]
[call site]
02563
store_array
[function]
[call site]
02564
store_array
[function]
[call site]
02565
fqz_create_models
[function]
[call site]
02566
RC_SetOutput
[function]
[call site]
02567
RC_SetOutputEnd
[function]
[call site]
02568
RC_StartEncode
[function]
[call site]
02569
compress_new_read
[function]
[call site]
02570
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02571
RC_Encode
[function]
[call site]
02572
RC_ShiftLowCheck
[function]
[call site]
02573
SIMPLE_MODEL256_normalize
[function]
[call site]
02574
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02575
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02576
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02577
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02578
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02579
SIMPLE_MODEL2_normalize
[function]
[call site]
02580
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02581
memcmp
[call site]
02582
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02583
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02584
mm_prefetch
[function]
[call site]
02585
fqz_update_ctx
[function]
[call site]
02586
mm_prefetch
[function]
[call site]
02587
fqz_update_ctx
[function]
[call site]
02588
mm_prefetch
[function]
[call site]
02589
fqz_update_ctx
[function]
[call site]
02590
mm_prefetch
[function]
[call site]
02591
fqz_update_ctx
[function]
[call site]
02592
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02593
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02594
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02595
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02596
mm_prefetch
[function]
[call site]
02597
fqz_update_ctx
[function]
[call site]
02598
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02599
RC_FinishEncode
[function]
[call site]
02600
RC_ShiftLowCheck
[function]
[call site]
02601
RC_OutSize
[function]
[call site]
02602
fqz_destroy_models
[function]
[call site]
02603
fqz_free_parameters
[function]
[call site]
02604
lzma_mem_deflate
[function]
[call site]
02605
lzma_stream_buffer_bound
[call site]
02606
lzma_easy_buffer_encode
[call site]
02607
rans_compress
[function]
[call site]
02608
rans_compress_O1
[function]
[call site]
02609
rans_compress_O0
[function]
[call site]
02610
hist8
[function]
[call site]
02611
htscodecs_tls_calloc
[function]
[call site]
02612
htscodecs_tls_free
[function]
[call site]
02613
__assert_fail
[call site]
02614
RansEncSymbolInit
[function]
[call site]
02615
__assert_fail
[call site]
02616
__assert_fail
[call site]
02617
RansEncInit
[function]
[call site]
02618
RansEncInit
[function]
[call site]
02619
RansEncInit
[function]
[call site]
02620
RansEncInit
[function]
[call site]
02621
RansEncPutSymbol
[function]
[call site]
02622
__assert_fail
[call site]
02623
RansEncPutSymbol
[function]
[call site]
02624
RansEncPutSymbol
[function]
[call site]
02625
RansEncPutSymbol
[function]
[call site]
02626
RansEncPutSymbol
[function]
[call site]
02627
RansEncPutSymbol
[function]
[call site]
02628
RansEncPutSymbol
[function]
[call site]
02629
RansEncFlush
[function]
[call site]
02630
RansEncFlush
[function]
[call site]
02631
RansEncFlush
[function]
[call site]
02632
RansEncFlush
[function]
[call site]
02633
htscodecs_tls_alloc
[function]
[call site]
02634
hist1_4
[function]
[call site]
02635
htscodecs_tls_calloc
[function]
[call site]
02636
htscodecs_tls_free
[function]
[call site]
02637
RansEncSymbolInit
[function]
[call site]
02638
__assert_fail
[call site]
02639
RansEncInit
[function]
[call site]
02640
RansEncInit
[function]
[call site]
02641
RansEncInit
[function]
[call site]
02642
RansEncInit
[function]
[call site]
02643
RansEncPutSymbol
[function]
[call site]
02644
RansEncPutSymbol4
[function]
[call site]
02645
__assert_fail
[call site]
02646
__assert_fail
[call site]
02647
__assert_fail
[call site]
02648
__assert_fail
[call site]
02649
RansEncPutSymbol
[function]
[call site]
02650
RansEncPutSymbol
[function]
[call site]
02651
RansEncPutSymbol
[function]
[call site]
02652
RansEncPutSymbol
[function]
[call site]
02653
RansEncFlush
[function]
[call site]
02654
RansEncFlush
[function]
[call site]
02655
RansEncFlush
[function]
[call site]
02656
RansEncFlush
[function]
[call site]
02657
htscodecs_tls_free
[function]
[call site]
02658
rans_compress_O0
[function]
[call site]
02659
rans_compress_4x16
[function]
[call site]
02660
rans_compress_to_4x16
[function]
[call site]
02661
rans_compress_bound_4x16
[function]
[call site]
02662
var_put_u32
[function]
[call site]
02663
rans_compress_to_4x16
[function]
[call site]
02664
realloc
[call site]
02665
var_put_u32
[function]
[call site]
02666
var_put_u32
[function]
[call site]
02667
var_put_u32
[function]
[call site]
02668
hts_pack
[function]
[call site]
02669
var_put_u32
[function]
[call site]
02670
hts_rle_encode
[function]
[call site]
02671
rle_find_syms
[function]
[call site]
02672
var_put_u32
[function]
[call site]
02673
var_put_u32
[function]
[call site]
02674
var_put_u32
[function]
[call site]
02675
rans_enc_func
[function]
[call site]
02676
pthread_once
[call site]
02677
htscodecs_tls_cpu_init
[function]
[call site]
02678
strerror
[call site]
02679
fprintf
[call site]
02680
fprintf
[call site]
02681
var_put_u32
[function]
[call site]
02682
var_put_u32
[function]
[call site]
02683
var_put_u32
[function]
[call site]
02684
rans_enc_func
[function]
[call site]
02685
arith_compress_to
[function]
[call site]
02686
arith_compress_bound
[function]
[call site]
02687
var_put_u32
[function]
[call site]
02688
var_put_u32
[function]
[call site]
02689
arith_compress_to
[function]
[call site]
02690
arith_compress_to
[function]
[call site]
02691
var_put_u32
[function]
[call site]
02692
var_put_u32
[function]
[call site]
02693
hts_pack
[function]
[call site]
02694
var_put_u32
[function]
[call site]
02695
BZ2_bzBuffToBuffCompress
[call site]
02696
arith_compress_O0_RLE
[function]
[call site]
02697
arith_compress_bound
[function]
[call site]
02698
SIMPLE_MODEL256_init
[function]
[call site]
02699
htscodecs_tls_alloc
[function]
[call site]
02700
SIMPLE_MODEL258_init
[function]
[call site]
02701
RC_SetOutput
[function]
[call site]
02702
RC_SetOutputEnd
[function]
[call site]
02703
RC_StartEncode
[function]
[call site]
02704
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02705
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02706
SIMPLE_MODEL258_normalize
[function]
[call site]
02707
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02708
RC_FinishEncode
[function]
[call site]
02709
htscodecs_tls_free
[function]
[call site]
02710
RC_OutSize
[function]
[call site]
02711
htscodecs_tls_free
[function]
[call site]
02712
arith_compress_O1_RLE
[function]
[call site]
02713
arith_compress_bound
[function]
[call site]
02714
htscodecs_tls_alloc
[function]
[call site]
02715
SIMPLE_MODEL256_init
[function]
[call site]
02716
htscodecs_tls_alloc
[function]
[call site]
02717
htscodecs_tls_free
[function]
[call site]
02718
SIMPLE_MODEL258_init
[function]
[call site]
02719
RC_SetOutput
[function]
[call site]
02720
RC_SetOutputEnd
[function]
[call site]
02721
RC_StartEncode
[function]
[call site]
02722
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02723
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02724
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02725
RC_FinishEncode
[function]
[call site]
02726
htscodecs_tls_free
[function]
[call site]
02727
htscodecs_tls_free
[function]
[call site]
02728
RC_OutSize
[function]
[call site]
02729
htscodecs_tls_free
[function]
[call site]
02730
htscodecs_tls_free
[function]
[call site]
02731
arith_compress_O1
[function]
[call site]
02732
arith_compress_bound
[function]
[call site]
02733
htscodecs_tls_alloc
[function]
[call site]
02734
SIMPLE_MODEL256_init
[function]
[call site]
02735
RC_SetOutput
[function]
[call site]
02736
RC_SetOutputEnd
[function]
[call site]
02737
RC_StartEncode
[function]
[call site]
02738
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02739
RC_FinishEncode
[function]
[call site]
02740
htscodecs_tls_free
[function]
[call site]
02741
RC_OutSize
[function]
[call site]
02742
htscodecs_tls_free
[function]
[call site]
02743
arith_compress_O0
[function]
[call site]
02744
arith_compress_bound
[function]
[call site]
02745
SIMPLE_MODEL256_init
[function]
[call site]
02746
RC_SetOutput
[function]
[call site]
02747
RC_SetOutputEnd
[function]
[call site]
02748
RC_StartEncode
[function]
[call site]
02749
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02750
RC_FinishEncode
[function]
[call site]
02751
RC_OutSize
[function]
[call site]
02752
tok3_encode_names
[function]
[call site]
02753
create_context
[function]
[call site]
02754
build_trie
[function]
[call site]
02755
calloc
[call site]
02756
pool_create
[function]
[call site]
02757
pool_alloc
[function]
[call site]
02758
new_pool
[function]
[call site]
02759
realloc
[call site]
02760
free_context
[function]
[call site]
02761
free_context
[function]
[call site]
02762
encode_name
[function]
[call site]
02763
search_trie
[function]
[call site]
02764
__ctype_b_loc
[call site]
02765
__ctype_b_loc
[call site]
02766
__ctype_b_loc
[call site]
02767
__ctype_b_loc
[call site]
02768
__ctype_b_loc
[call site]
02769
calloc
[call site]
02770
__ctype_b_loc
[call site]
02771
strlen
[call site]
02772
encode_token_dup
[function]
[call site]
02773
encode_token_int
[function]
[call site]
02774
encode_token_type
[function]
[call site]
02775
descriptor_grow
[function]
[call site]
02776
realloc
[call site]
02777
descriptor_grow
[function]
[call site]
02778
encode_token_diff
[function]
[call site]
02779
encode_token_int
[function]
[call site]
02780
encode_token_char
[function]
[call site]
02781
encode_token_type
[function]
[call site]
02782
descriptor_grow
[function]
[call site]
02783
memcmp
[call site]
02784
encode_token_match
[function]
[call site]
02785
encode_token_type
[function]
[call site]
02786
encode_token_alpha
[function]
[call site]
02787
encode_token_type
[function]
[call site]
02788
descriptor_grow
[function]
[call site]
02789
encode_token_alpha
[function]
[call site]
02790
__ctype_b_loc
[call site]
02791
__ctype_b_loc
[call site]
02792
__ctype_b_loc
[call site]
02793
memcmp
[call site]
02794
encode_token_match
[function]
[call site]
02795
encode_token_alpha
[function]
[call site]
02796
encode_token_alpha
[function]
[call site]
02797
__ctype_b_loc
[call site]
02798
encode_token_match
[function]
[call site]
02799
encode_token_int1
[function]
[call site]
02800
encode_token_type
[function]
[call site]
02801
descriptor_grow
[function]
[call site]
02802
encode_token_int1_
[function]
[call site]
02803
descriptor_grow
[function]
[call site]
02804
encode_token_int
[function]
[call site]
02805
encode_token_int1_
[function]
[call site]
02806
encode_token_int
[function]
[call site]
02807
__ctype_b_loc
[call site]
02808
__ctype_b_loc
[call site]
02809
encode_token_match
[function]
[call site]
02810
encode_token_int1
[function]
[call site]
02811
encode_token_int
[function]
[call site]
02812
encode_token_int
[function]
[call site]
02813
encode_token_match
[function]
[call site]
02814
encode_token_char
[function]
[call site]
02815
encode_token_char
[function]
[call site]
02816
encode_token_end
[function]
[call site]
02817
encode_token_type
[function]
[call site]
02818
realloc
[call site]
02819
free_context
[function]
[call site]
02820
arith_compress_bound
[function]
[call site]
02821
free_context
[function]
[call site]
02822
compress
[function]
[call site]
02823
arith_encode
[function]
[call site]
02824
arith_compress_to
[function]
[call site]
02825
var_put_u32
[function]
[call site]
02826
rans_encode
[function]
[call site]
02827
rans_compress_to_4x16
[function]
[call site]
02828
var_put_u32
[function]
[call site]
02829
free_context
[function]
[call site]
02830
memcmp
[call site]
02831
free_context
[function]
[call site]
02832
free_context
[function]
[call site]
02833
pthread_mutex_lock
[call site]
02834
pthread_mutex_unlock
[call site]
02835
pthread_mutex_unlock
[call site]
02836
cram_compress_by_method
[function]
[call site]
02837
cram_block_method2str
[function]
[call site]
02838
hts_log
[function]
[call site]
02839
pthread_mutex_lock
[call site]
02840
pthread_mutex_unlock
[call site]
02841
cram_compress_block3
[function]
[call site]
02842
cram_compress_by_method
[function]
[call site]
02843
hts_log
[function]
[call site]
02844
cram_block_method2str
[function]
[call site]
02845
hts_log
[function]
[call site]
02846
pthread_mutex_lock
[call site]
02847
pthread_mutex_unlock
[call site]
02848
cram_compress_block2
[function]
[call site]
02849
cram_compress_block2
[function]
[call site]
02850
cram_compress_block2
[function]
[call site]
02851
cram_compress_block2
[function]
[call site]
02852
cram_compress_block2
[function]
[call site]
02853
cram_compress_block2
[function]
[call site]
02854
cram_compress_block2
[function]
[call site]
02855
cram_compress_block2
[function]
[call site]
02856
cram_compress_block2
[function]
[call site]
02857
cram_compress_block2
[function]
[call site]
02858
cram_compress_block2
[function]
[call site]
02859
cram_compress_block2
[function]
[call site]
02860
cram_compress_block2
[function]
[call site]
02861
cram_compress_block2
[function]
[call site]
02862
cram_compress_block2
[function]
[call site]
02863
realloc
[call site]
02864
cram_free_block
[function]
[call site]
02865
cram_encode_slice_header
[function]
[call site]
02866
cram_new_block
[function]
[call site]
02867
cram_free_block
[function]
[call site]
02868
cram_free_block
[function]
[call site]
02869
__assert_fail
[call site]
02870
cram_encode_compression_header
[function]
[call site]
02871
cram_new_block
[function]
[call site]
02872
cram_new_block
[function]
[call site]
02873
itf8_put_blk
[function]
[call site]
02874
itf8_put
[function]
[call site]
02875
block_append
[function]
[call site]
02876
itf8_put_blk
[function]
[call site]
02877
itf8_put_blk
[function]
[call site]
02878
itf8_put_blk
[function]
[call site]
02879
itf8_put_blk
[function]
[call site]
02880
itf8_put_blk
[function]
[call site]
02881
kh_destroy_map
[function]
[call site]
02882
kh_init_map
[function]
[call site]
02883
calloc
[call site]
02884
kh_put_map
[function]
[call site]
02885
kh_resize_map
[function]
[call site]
02886
realloc
[call site]
02887
__ac_FNV1a_hash_string
[function]
[call site]
02888
strcmp
[call site]
02889
kh_put_map
[function]
[call site]
02890
kh_put_map
[function]
[call site]
02891
kh_put_map
[function]
[call site]
02892
kh_put_map
[function]
[call site]
02893
kh_put_map
[function]
[call site]
02894
kh_put_map
[function]
[call site]
02895
kh_put_map
[function]
[call site]
02896
kh_put_map
[function]
[call site]
02897
block_append
[function]
[call site]
02898
block_append_char
[function]
[call site]
02899
sub_idx
[function]
[call site]
02900
sub_idx
[function]
[call site]
02901
sub_idx
[function]
[call site]
02902
sub_idx
[function]
[call site]
02903
sub_idx
[function]
[call site]
02904
sub_idx
[function]
[call site]
02905
sub_idx
[function]
[call site]
02906
sub_idx
[function]
[call site]
02907
sub_idx
[function]
[call site]
02908
sub_idx
[function]
[call site]
02909
sub_idx
[function]
[call site]
02910
sub_idx
[function]
[call site]
02911
sub_idx
[function]
[call site]
02912
sub_idx
[function]
[call site]
02913
sub_idx
[function]
[call site]
02914
sub_idx
[function]
[call site]
02915
sub_idx
[function]
[call site]
02916
sub_idx
[function]
[call site]
02917
sub_idx
[function]
[call site]
02918
sub_idx
[function]
[call site]
02919
block_append
[function]
[call site]
02920
block_append
[function]
[call site]
02921
hts_log
[function]
[call site]
02922
block_append
[function]
[call site]
02923
block_append
[function]
[call site]
02924
block_append
[function]
[call site]
02925
hts_log
[function]
[call site]
02926
cram_free_block
[function]
[call site]
02927
cram_ref_decr
[function]
[call site]
02928
cram_ref_decr
[function]
[call site]
02929
cram_flush_container2
[function]
[call site]
02930
htell
[function]
[call site]
02931
cram_write_container
[function]
[call site]
02932
itf8_put
[function]
[call site]
02933
crc32
[call site]
02934
hwrite
[function]
[call site]
02935
htell
[function]
[call site]
02936
cram_write_block
[function]
[call site]
02937
__assert_fail
[call site]
02938
hputc
[function]
[call site]
02939
hputc2
[function]
[call site]
02940
flush_buffer
[function]
[call site]
02941
hputc
[function]
[call site]
02942
hwrite
[function]
[call site]
02943
hwrite
[function]
[call site]
02944
hwrite
[function]
[call site]
02945
crc32
[call site]
02946
crc32
[call site]
02947
crc32
[call site]
02948
int32_encode
[function]
[call site]
02949
hwrite
[function]
[call site]
02950
htell
[function]
[call site]
02951
cram_write_block
[function]
[call site]
02952
cram_write_block
[function]
[call site]
02953
htell
[function]
[call site]
02954
cram_index_slice
[function]
[call site]
02955
hts_log
[function]
[call site]
02956
cram_index_build_multiref
[function]
[call site]
02957
cram_decode_slice
[function]
[call site]
02958
cram_dependent_data_series
[function]
[call site]
02959
cram_uncompress_block
[function]
[call site]
02960
cram_uncompress_block
[function]
[call site]
02961
calloc
[call site]
02962
cram_codec_to_id
[function]
[call site]
02963
cram_codec_to_id
[function]
[call site]
02964
cram_codec_to_id
[function]
[call site]
02965
hts_log
[function]
[call site]
02966
cram_uncompress_block
[function]
[call site]
02967
cram_codec_to_id
[function]
[call site]
02968
cram_uncompress_block
[function]
[call site]
02969
cram_codec_to_id
[function]
[call site]
02970
cram_codec_to_id
[function]
[call site]
02971
block_resize_exact
[function]
[call site]
02972
block_resize_exact
[function]
[call site]
02973
block_resize_exact
[function]
[call site]
02974
strcmp
[call site]
02975
hts_log
[function]
[call site]
02976
cram_get_block_by_id
[function]
[call site]
02977
cram_uncompress_block
[function]
[call site]
02978
hts_log
[function]
[call site]
02979
cram_get_ref
[function]
[call site]
02980
hts_log
[function]
[call site]
02981
pthread_mutex_lock
[call site]
02982
pthread_mutex_lock
[call site]
02983
pthread_mutex_unlock
[call site]
02984
pthread_mutex_unlock
[call site]
02985
hts_log
[function]
[call site]
02986
memcmp
[call site]
02987
hts_log
[function]
[call site]
02988
hts_log
[function]
[call site]
02989
hts_md5_init
[function]
[call site]
02990
hts_md5_update
[function]
[call site]
02991
hts_md5_final
[function]
[call site]
02992
hts_md5_destroy
[function]
[call site]
02993
cram_get_block_by_id
[function]
[call site]
02994
hts_md5_init
[function]
[call site]
02995
hts_md5_update
[function]
[call site]
02996
hts_md5_final
[function]
[call site]
02997
hts_md5_destroy
[function]
[call site]
02998
memcmp
[call site]
02999
sam_hdr_tid2name
[function]
[call site]
03000
hts_log
[function]
[call site]
03001
md5_print
[function]
[call site]
03002
hts_log
[function]
[call site]
03003
md5_print
[function]
[call site]
03004
hts_log
[function]
[call site]
03005
sam_hdr_find_tag_id
[function]
[call site]
03006
sam_hdr_fill_hrecs
[function]
[call site]
03007
sam_hrecs_find_type_id
[function]
[call site]
03008
sam_hrecs_find_key
[function]
[call site]
03009
kputsn
[function]
[call site]
03010
hts_log
[function]
[call site]
03011
hts_log
[function]
[call site]
03012
ks_free
[function]
[call site]
03013
ks_initialize
[function]
[call site]
03014
pthread_mutex_lock
[call site]
03015
pthread_mutex_lock
[call site]
03016
calloc
[call site]
03017
pthread_mutex_unlock
[call site]
03018
pthread_mutex_unlock
[call site]
03019
pthread_mutex_lock
[call site]
03020
pthread_mutex_unlock
[call site]
03021
cram_get_ref
[function]
[call site]
03022
pthread_mutex_lock
[call site]
03023
pthread_mutex_unlock
[call site]
03024
pthread_mutex_lock
[call site]
03025
pthread_mutex_unlock
[call site]
03026
cram_ref_decr
[function]
[call site]
03027
pthread_mutex_lock
[call site]
03028
pthread_mutex_lock
[call site]
03029
pthread_mutex_unlock
[call site]
03030
pthread_mutex_unlock
[call site]
03031
hts_log
[function]
[call site]
03032
hts_log
[function]
[call site]
03033
pthread_mutex_lock
[call site]
03034
pthread_mutex_unlock
[call site]
03035
cram_decode_tlen
[function]
[call site]
03036
cram_decode_tlen
[function]
[call site]
03037
cram_decode_tlen
[function]
[call site]
03038
cram_decode_aux_1_0
[function]
[call site]
03039
map_find
[function]
[call site]
03040
block_append
[function]
[call site]
03041
cram_decode_aux
[function]
[call site]
03042
strlen
[call site]
03043
sam_hdr_line_name
[function]
[call site]
03044
sam_hdr_fill_hrecs
[function]
[call site]
03045
hts_log
[function]
[call site]
03046
hts_log
[function]
[call site]
03047
hts_log
[function]
[call site]
03048
hts_log
[function]
[call site]
03049
strlen
[call site]
03050
block_append
[function]
[call site]
03051
block_append
[function]
[call site]
03052
block_append_char
[function]
[call site]
03053
block_append
[function]
[call site]
03054
map_find
[function]
[call site]
03055
block_append
[function]
[call site]
03056
hts_log
[function]
[call site]
03057
block_resize
[function]
[call site]
03058
block_resize
[function]
[call site]
03059
cram_decode_seq
[function]
[call site]
03060
block_append
[function]
[call site]
03061
realloc
[call site]
03062
hts_log
[function]
[call site]
03063
hts_log
[function]
[call site]
03064
memchr
[call site]
03065
add_md_char
[function]
[call site]
03066
block_append_uint
[function]
[call site]
03067
block_grow
[function]
[call site]
03068
append_uint32
[function]
[call site]
03069
block_append_char
[function]
[call site]
03070
block_append_uint
[function]
[call site]
03071
add_md_char
[function]
[call site]
03072
block_append_uint
[function]
[call site]
03073
block_append_char
[function]
[call site]
03074
block_append
[function]
[call site]
03075
block_append_char
[function]
[call site]
03076
block_append
[function]
[call site]
03077
block_append_uint
[function]
[call site]
03078
block_append_uint
[function]
[call site]
03079
block_append_uint
[function]
[call site]
03080
block_append_char
[function]
[call site]
03081
block_append_uint
[function]
[call site]
03082
block_append_char
[function]
[call site]
03083
hts_log
[function]
[call site]
03084
hts_log
[function]
[call site]
03085
memchr
[call site]
03086
add_md_char
[function]
[call site]
03087
realloc
[call site]
03088
block_append_uint
[function]
[call site]
03089
realloc
[call site]
03090
block_append_char
[function]
[call site]
03091
block_append
[function]
[call site]
03092
pthread_mutex_lock
[call site]
03093
cram_ref_decr
[function]
[call site]
03094
cram_ref_decr
[function]
[call site]
03095
pthread_mutex_unlock
[call site]
03096
cram_decode_slice_xref
[function]
[call site]
03097
hts_log
[function]
[call site]
03098
cram_free_block
[function]
[call site]
03099
block_resize_exact
[function]
[call site]
03100
block_resize_exact
[function]
[call site]
03101
block_resize_exact
[function]
[call site]
03102
block_resize_exact
[function]
[call site]
03103
pthread_mutex_lock
[call site]
03104
cram_ref_decr
[function]
[call site]
03105
pthread_mutex_unlock
[call site]
03106
hts_log
[function]
[call site]
03107
snprintf
[call site]
03108
strlen
[call site]
03109
bgzf_write
[function]
[call site]
03110
hwrite
[function]
[call site]
03111
__assert_fail
[call site]
03112
lazy_flush
[function]
[call site]
03113
mt_queue
[function]
[call site]
03114
bgzf_flush
[function]
[call site]
03115
snprintf
[call site]
03116
strlen
[call site]
03117
bgzf_write
[function]
[call site]
03118
snprintf
[call site]
03119
strlen
[call site]
03120
bgzf_write
[function]
[call site]
03121
__errno_location
[call site]
03122
hts_tpool_dispatch2
[function]
[call site]
03123
hts_tpool_dispatch3
[function]
[call site]
03124
cram_flush_thread
[function]
[call site]
03125
cram_encode_container
[function]
[call site]
03126
hts_log
[function]
[call site]
03127
__errno_location
[call site]
03128
cram_flush_result
[function]
[call site]
03129
hts_tpool_next_result
[function]
[call site]
03130
pthread_mutex_lock
[call site]
03131
hts_tpool_next_result_locked
[function]
[call site]
03132
pthread_mutex_unlock
[call site]
03133
hts_tpool_result_data
[function]
[call site]
03134
hts_tpool_delete_result
[function]
[call site]
03135
cram_flush_container2
[function]
[call site]
03136
cram_free_slice
[function]
[call site]
03137
cram_free_slice
[function]
[call site]
03138
cram_free_container
[function]
[call site]
03139
hts_tpool_delete_result
[function]
[call site]
03140
cram_free_container
[function]
[call site]
03141
hts_usleep
[function]
[call site]
03142
cram_drain_rqueue
[function]
[call site]
03143
hts_tpool_process_flush
[function]
[call site]
03144
cram_flush_result
[function]
[call site]
03145
hts_tpool_process_destroy
[function]
[call site]
03146
pthread_mutex_destroy
[call site]
03147
pthread_mutex_destroy
[call site]
03148
pthread_mutex_destroy
[call site]
03149
pthread_mutex_destroy
[call site]
03150
cram_write_eof_block
[function]
[call site]
03151
cram_encode_compression_header
[function]
[call site]
03152
cram_write_container
[function]
[call site]
03153
cram_write_block
[function]
[call site]
03154
cram_close
[function]
[call site]
03155
free_bam_list
[function]
[call site]
03156
hclose
[function]
[call site]
03157
cram_free_file_def
[function]
[call site]
03158
sam_hdr_destroy
[function]
[call site]
03159
cram_free_container
[function]
[call site]
03160
cram_free_container
[function]
[call site]
03161
refs_free
[function]
[call site]
03162
kh_destroy_m_metrics
[function]
[call site]
03163
cram_index_free
[function]
[call site]
03164
cram_index_free_recurse
[function]
[call site]
03165
cram_index_free_recurse
[function]
[call site]
03166
hts_tpool_destroy
[function]
[call site]
03167
bgzf_close
[function]
[call site]
03168
cram_free_block
[function]
[call site]
03169
kh_destroy_map
[function]
[call site]
03170
cram_free_block
[function]
[call site]
03171
sam_state_destroy
[function]
[call site]
03172
fastq_state_destroy
[function]
[call site]
03173
kh_destroy_tag
[function]
[call site]
03174
ks_free
[function]
[call site]
03175
ks_initialize
[function]
[call site]
03176
ks_free
[function]
[call site]
03177
ks_free
[function]
[call site]
03178
bgzf_close
[function]
[call site]
03179
hclose
[function]
[call site]
03180
hts_idx_close_otf_fp
[function]
[call site]
03181
need_idx_ugly_delay_hack
[function]
[call site]
03182
idx_write_uint64
[function]
[call site]
03183
ed_is_big
[function]
[call site]
03184
ed_swap_8
[function]
[call site]
03185
bgzf_write
[function]
[call site]
03186
bgzf_close
[function]
[call site]
03187
__errno_location
[call site]
03188
sam_hdr_destroy
[function]
[call site]
03189
hts_idx_destroy
[function]
[call site]
03190
cram_index_free
[function]
[call site]
03191
kh_destroy_bin
[function]
[call site]
03192
hts_filter_free
[function]
[call site]
03193
__errno_location
[call site]
03194
view_sam
[function]
[call site]
03195
abort
[call site]
03196
hopen
[function]
[call site]
03197
hts_hopen
[function]
[call site]
03198
hclose
[function]
[call site]
03199
abort
[call site]
03200
hts_open
[function]
[call site]
03201
hts_open_format
[function]
[call site]
03202
strncpy
[call site]
03203
strchr
[call site]
03204
strchr
[call site]
03205
strchr
[call site]
03206
strstr
[call site]
03207
strdup
[call site]
03208
hopen
[function]
[call site]
03209
hts_hopen
[function]
[call site]
03210
hts_opt_apply
[function]
[call site]
03211
__errno_location
[call site]
03212
__errno_location
[call site]
03213
__errno_location
[call site]
03214
__errno_location
[call site]
03215
strerror
[call site]
03216
hts_log
[function]
[call site]
03217
hclose_abruptly
[function]
[call site]
03218
abort
[call site]
03219
sam_hdr_read
[function]
[call site]
03220
__errno_location
[call site]
03221
bam_hdr_read
[function]
[call site]
03222
bgzf_check_EOF
[function]
[call site]
03223
pthread_mutex_lock
[call site]
03224
pthread_cond_signal
[call site]
03225
hts_tpool_wake_dispatch
[function]
[call site]
03226
pthread_mutex_unlock
[call site]
03227
pthread_cond_wait
[call site]
03228
pthread_cond_signal
[call site]
03229
abort
[call site]
03230
pthread_mutex_unlock
[call site]
03231
bgzf_check_EOF_common
[function]
[call site]
03232
htell
[function]
[call site]
03233
hseek
[function]
[call site]
03234
__errno_location
[call site]
03235
hclearerr
[function]
[call site]
03236
__errno_location
[call site]
03237
hclearerr
[function]
[call site]
03238
hread
[function]
[call site]
03239
hseek
[function]
[call site]
03240
memcmp
[call site]
03241
perror
[call site]
03242
hts_log
[function]
[call site]
03243
bgzf_read
[function]
[call site]
03244
memcmp
[call site]
03245
sam_hdr_init
[function]
[call site]
03246
bgzf_read
[function]
[call site]
03247
le_to_u32
[function]
[call site]
03248
bgzf_read
[function]
[call site]
03249
bgzf_read
[function]
[call site]
03250
ed_swap_4p
[function]
[call site]
03251
ed_swap_4
[function]
[call site]
03252
calloc
[call site]
03253
calloc
[call site]
03254
bgzf_read
[function]
[call site]
03255
ed_swap_4p
[function]
[call site]
03256
bgzf_read
[function]
[call site]
03257
bgzf_read
[function]
[call site]
03258
ed_swap_4p
[function]
[call site]
03259
hts_log
[function]
[call site]
03260
hts_log
[function]
[call site]
03261
hts_log
[function]
[call site]
03262
sam_hdr_destroy
[function]
[call site]
03263
sam_hdr_sanitise
[function]
[call site]
03264
hts_log
[function]
[call site]
03265
sam_hdr_destroy
[function]
[call site]
03266
hts_log
[function]
[call site]
03267
hts_log
[function]
[call site]
03268
hts_log
[function]
[call site]
03269
sam_hdr_destroy
[function]
[call site]
03270
realloc
[call site]
03271
sam_hdr_destroy
[function]
[call site]
03272
sam_hdr_dup
[function]
[call site]
03273
sam_hdr_init
[function]
[call site]
03274
calloc
[call site]
03275
calloc
[call site]
03276
strdup
[call site]
03277
sam_hdr_dup_sdict
[function]
[call site]
03278
kh_init_s2i
[function]
[call site]
03279
kh_get_s2i
[function]
[call site]
03280
kh_put_s2i
[function]
[call site]
03281
kh_destroy_s2i
[function]
[call site]
03282
sam_hrecs_rebuild_text
[function]
[call site]
03283
kputsn
[function]
[call site]
03284
sam_hrecs_rebuild_lines
[function]
[call site]
03285
kputsn
[function]
[call site]
03286
build_header_line
[function]
[call site]
03287
kputc_
[function]
[call site]
03288
kputsn
[function]
[call site]
03289
kputc_
[function]
[call site]
03290
kputsn
[function]
[call site]
03291
kputc
[function]
[call site]
03292
ks_release
[function]
[call site]
03293
ks_release
[function]
[call site]
03294
sam_hdr_update_target_arrays
[function]
[call site]
03295
sam_hdr_destroy
[function]
[call site]
03296
sam_hdr_sanitise
[function]
[call site]
03297
sam_hdr_create
[function]
[call site]
03298
sam_hdr_init
[function]
[call site]
03299
sam_hdr_build_from_sam_file
[function]
[call site]
03300
sam_hrecs_new
[function]
[call site]
03301
hts_getline
[function]
[call site]
03302
hts_log
[function]
[call site]
03303
abort
[call site]
03304
kgetline2
[function]
[call site]
03305
ks_resize
[function]
[call site]
03306
hgetln
[function]
[call site]
03307
herrno
[function]
[call site]
03308
__errno_location
[call site]
03309
bgzf_getline
[function]
[call site]
03310
bgzf_read_block
[function]
[call site]
03311
memchr
[call site]
03312
ks_expand
[function]
[call site]
03313
bgzf_htell
[function]
[call site]
03314
abort
[call site]
03315
isalpha_c
[function]
[call site]
03316
sam_hrecs_error
[function]
[call site]
03317
strncmp
[call site]
03318
kputc
[function]
[call site]
03319
valid_sam_header_type
[function]
[call site]
03320
hts_log
[function]
[call site]
03321
warn_if_known_stderr
[function]
[call site]
03322
sam_hrecs_parse_single_line
[function]
[call site]
03323
TYPEKEY
[function]
[call site]
03324
kputsn
[function]
[call site]
03325
kputc
[function]
[call site]
03326
bgzf_peek
[function]
[call site]
03327
bgzf_read_block
[function]
[call site]
03328
hts_log
[function]
[call site]
03329
hpeek
[function]
[call site]
03330
strstr
[call site]
03331
hopen
[function]
[call site]
03332
kgetline
[function]
[call site]
03333
strlen
[call site]
03334
hgets
[function]
[call site]
03335
strchr
[call site]
03336
strtoll
[call site]
03337
kputs
[function]
[call site]
03338
kputsn
[function]
[call site]
03339
kputs
[function]
[call site]
03340
kputll
[function]
[call site]
03341
kputc
[function]
[call site]
03342
sam_hrecs_parse_single_line
[function]
[call site]
03343
ks_free
[function]
[call site]
03344
hclose
[function]
[call site]
03345
hts_log
[function]
[call site]
03346
kh_grow_to_fit_m_s2i
[function]
[call site]
03347
realloc
[call site]
03348
sam_hrecs_update_hashes
[function]
[call site]
03349
kputsn
[function]
[call site]
03350
ks_release
[function]
[call site]
03351
sam_hdr_update_target_arrays
[function]
[call site]
03352
ks_free
[function]
[call site]
03353
sam_hdr_destroy
[function]
[call site]
03354
sam_hdr_sanitise
[function]
[call site]
03355
sam_hdr_init
[function]
[call site]
03356
__errno_location
[call site]
03357
__errno_location
[call site]
03358
hts_close_or_abort
[function]
[call site]
03359
hts_close
[function]
[call site]
03360
abort
[call site]
03361
hts_close
[function]
[call site]
03362
hts_close
[function]
[call site]
03363
sam_hdr_count_lines
[function]
[call site]
03364
sam_hdr_fill_hrecs
[function]
[call site]
03365
sam_hrecs_find_type_id
[function]
[call site]
03366
sam_hdr_write
[function]
[call site]
03367
__errno_location
[call site]
03368
bam_hdr_write
[function]
[call site]
03369
sam_hrecs_rebuild_text
[function]
[call site]
03370
hts_log
[function]
[call site]
03371
hts_log
[function]
[call site]
03372
hts_log
[function]
[call site]
03373
hts_log
[function]
[call site]
03374
hts_log
[function]
[call site]
03375
hts_log
[function]
[call site]
03376
bgzf_write
[function]
[call site]
03377
ed_swap_4
[function]
[call site]
03378
bgzf_write
[function]
[call site]
03379
bgzf_write
[function]
[call site]
03380
ed_swap_4
[function]
[call site]
03381
bgzf_write
[function]
[call site]
03382
bgzf_write
[function]
[call site]
03383
bgzf_write
[function]
[call site]
03384
bgzf_write
[function]
[call site]
03385
strlen
[call site]
03386
ed_swap_4
[function]
[call site]
03387
bgzf_write
[function]
[call site]
03388
bgzf_write
[function]
[call site]
03389
bgzf_write
[function]
[call site]
03390
ed_swap_4
[function]
[call site]
03391
bgzf_write
[function]
[call site]
03392
bgzf_write
[function]
[call site]
03393
bgzf_flush
[function]
[call site]
03394
cram_set_header2
[function]
[call site]
03395
sam_hdr_destroy
[function]
[call site]
03396
sam_hdr_dup
[function]
[call site]
03397
refs_from_header
[function]
[call site]
03398
cram_load_reference
[function]
[call site]
03399
cram_write_SAM_hdr
[function]
[call site]
03400
cram_write_file_def
[function]
[call site]
03401
hwrite
[function]
[call site]
03402
sam_hrecs_find_rg
[function]
[call site]
03403
sam_hdr_add_line
[function]
[call site]
03404
sam_hdr_fill_hrecs
[function]
[call site]
03405
sam_hrecs_vadd
[function]
[call site]
03406
rebuild_target_arrays
[function]
[call site]
03407
redact_header_text
[function]
[call site]
03408
refs_from_header
[function]
[call site]
03409
refs2id
[function]
[call site]
03410
sam_hrecs_find_type_id
[function]
[call site]
03411
sam_hrecs_find_key
[function]
[call site]
03412
cram_get_ref
[function]
[call site]
03413
hts_log
[function]
[call site]
03414
hts_log
[function]
[call site]
03415
hts_log
[function]
[call site]
03416
pthread_mutex_lock
[call site]
03417
pthread_mutex_unlock
[call site]
03418
hts_md5_init
[function]
[call site]
03419
hts_md5_update
[function]
[call site]
03420
hts_md5_final
[function]
[call site]
03421
hts_md5_destroy
[function]
[call site]
03422
cram_ref_decr
[function]
[call site]
03423
hts_md5_hex
[function]
[call site]
03424
sam_hdr_update_line
[function]
[call site]
03425
sam_hdr_fill_hrecs
[function]
[call site]
03426
sam_hrecs_find_type_id
[function]
[call site]
03427
check_for_name_update
[function]
[call site]
03428
TYPEKEY
[function]
[call site]
03429
TYPEKEY
[function]
[call site]
03430
TYPEKEY
[function]
[call site]
03431
sam_hrecs_find_key
[function]
[call site]
03432
__assert_fail
[call site]
03433
strcmp
[call site]
03434
strcmp
[call site]
03435
kh_get_m_s2i
[function]
[call site]
03436
hts_log
[function]
[call site]
03437
TYPEKEY
[function]
[call site]
03438
hts_log
[function]
[call site]
03439
sam_hrecs_vupdate
[function]
[call site]
03440
kh_get_m_s2i
[function]
[call site]
03441
sam_hrecs_find_key
[function]
[call site]
03442
__assert_fail
[call site]
03443
__assert_fail
[call site]
03444
kh_del_m_s2i
[function]
[call site]
03445
kh_put_m_s2i
[function]
[call site]
03446
hts_log
[function]
[call site]
03447
TYPEKEY
[function]
[call site]
03448
sam_hrecs_update_hashes
[function]
[call site]
03449
rebuild_target_arrays
[function]
[call site]
03450
redact_header_text
[function]
[call site]
03451
full_path
[function]
[call site]
03452
strlen
[call site]
03453
hisremote
[function]
[call site]
03454
hts_log
[function]
[call site]
03455
strncpy
[call site]
03456
toupper_c
[function]
[call site]
03457
strncpy
[call site]
03458
getcwd
[call site]
03459
strlen
[call site]
03460
strncpy
[call site]
03461
snprintf
[call site]
03462
sam_hdr_update_line
[function]
[call site]
03463
sam_hdr_length
[function]
[call site]
03464
sam_hdr_rebuild
[function]
[call site]
03465
rebuild_target_arrays
[function]
[call site]
03466
hts_log
[function]
[call site]
03467
sam_hdr_link_pg
[function]
[call site]
03468
sam_hdr_fill_hrecs
[function]
[call site]
03469
realloc
[call site]
03470
calloc
[call site]
03471
__assert_fail
[call site]
03472
kh_get_m_s2i
[function]
[call site]
03473
hts_log
[function]
[call site]
03474
redact_header_text
[function]
[call site]
03475
hts_log
[function]
[call site]
03476
sam_hrecs_rebuild_text
[function]
[call site]
03477
ks_free
[function]
[call site]
03478
hts_log
[function]
[call site]
03479
ks_len
[function]
[call site]
03480
ks_release
[function]
[call site]
03481
hts_log
[function]
[call site]
03482
int32_encode
[function]
[call site]
03483
sam_hdr_str
[function]
[call site]
03484
sam_hdr_rebuild
[function]
[call site]
03485
hwrite
[function]
[call site]
03486
cram_new_block
[function]
[call site]
03487
cram_new_container
[function]
[call site]
03488
calloc
[call site]
03489
calloc
[call site]
03490
cram_new_compression_header
[function]
[call site]
03491
calloc
[call site]
03492
cram_new_block
[function]
[call site]
03493
kh_init_m_s2i
[function]
[call site]
03494
cram_free_block
[function]
[call site]
03495
string_pool_create
[function]
[call site]
03496
kh_destroy_m_s2i
[function]
[call site]
03497
cram_free_block
[function]
[call site]
03498
cram_stats_create
[function]
[call site]
03499
calloc
[call site]
03500
kh_init_m_tagmap
[function]
[call site]
03501
calloc
[call site]
03502
cram_free_block
[function]
[call site]
03503
cram_free_container
[function]
[call site]
03504
int32_put_blk
[function]
[call site]
03505
block_append
[function]
[call site]
03506
sam_hdr_str
[function]
[call site]
03507
block_append
[function]
[call site]
03508
cram_compress_block
[function]
[call site]
03509
cram_compress_block2
[function]
[call site]
03510
cram_free_block
[function]
[call site]
03511
cram_free_container
[function]
[call site]
03512
calloc
[call site]
03513
cram_free_block
[function]
[call site]
03514
cram_free_container
[function]
[call site]
03515
block_append
[function]
[call site]
03516
cram_write_container
[function]
[call site]
03517
cram_free_block
[function]
[call site]
03518
cram_free_container
[function]
[call site]
03519
cram_write_block
[function]
[call site]
03520
cram_free_block
[function]
[call site]
03521
cram_free_container
[function]
[call site]
03522
block_resize
[function]
[call site]
03523
cram_write_block
[function]
[call site]
03524
cram_free_block
[function]
[call site]
03525
cram_free_container
[function]
[call site]
03526
cram_free_block
[function]
[call site]
03527
cram_free_container
[function]
[call site]
03528
hflush
[function]
[call site]
03529
sam_hrecs_rebuild_text
[function]
[call site]
03530
strstr
[call site]
03531
bgzf_write
[function]
[call site]
03532
hwrite
[function]
[call site]
03533
kputsn
[function]
[call site]
03534
kputs
[function]
[call site]
03535
kputsn
[function]
[call site]
03536
kputw
[function]
[call site]
03537
kputc
[function]
[call site]
03538
bgzf_write
[function]
[call site]
03539
hwrite
[function]
[call site]
03540
bgzf_flush
[function]
[call site]
03541
hflush
[function]
[call site]
03542
__errno_location
[call site]
03543
bam_init1
[function]
[call site]
03544
calloc
[call site]
03545
sam_read1
[function]
[call site]
03546
sam_read1_bam
[function]
[call site]
03547
bam_read1
[function]
[call site]
03548
bgzf_read_small
[function]
[call site]
03549
bgzf_read
[function]
[call site]
03550
ed_swap_4p
[function]
[call site]
03551
bgzf_read
[function]
[call site]
03552
le_to_u32
[function]
[call site]
03553
le_to_i32
[function]
[call site]
03554
le_to_u32
[function]
[call site]
03555
le_to_u32
[function]
[call site]
03556
le_to_u32
[function]
[call site]
03557
le_to_i32
[function]
[call site]
03558
le_to_i32
[function]
[call site]
03559
realloc_bam_data
[function]
[call site]
03560
sam_realloc_bam_data
[function]
[call site]
03561
__errno_location
[call site]
03562
__errno_location
[call site]
03563
bam_get_mempolicy
[function]
[call site]
03564
realloc
[call site]
03565
bam_get_mempolicy
[function]
[call site]
03566
bam_set_mempolicy
[function]
[call site]
03567
bgzf_read_small
[function]
[call site]
03568
fixup_missing_qname_nul
[function]
[call site]
03569
realloc_bam_data
[function]
[call site]
03570
bgzf_read_small
[function]
[call site]
03571
swap_data
[function]
[call site]
03572
ed_swap_4p
[function]
[call site]
03573
bam_tag2cigar
[function]
[call site]
03574
bam_aux_get
[function]
[call site]
03575
__errno_location
[call site]
03576
__errno_location
[call site]
03577
__errno_location
[call site]
03578
le_to_u32
[function]
[call site]
03579
possibly_expand_bam_data
[function]
[call site]
03580
__errno_location
[call site]
03581
sam_realloc_bam_data
[function]
[call site]
03582
bam_endpos
[function]
[call site]
03583
bam_cigar2rlen
[function]
[call site]
03584
hts_reg2bin
[function]
[call site]
03585
hts_log
[function]
[call site]
03586
bam_cigar2rqlens
[function]
[call site]
03587
hts_reg2bin
[function]
[call site]
03588
hts_log
[function]
[call site]
03589
__errno_location
[call site]
03590
sam_read1_cram
[function]
[call site]
03591
cram_get_bam_seq
[function]
[call site]
03592
cram_get_seq
[function]
[call site]
03593
cram_next_slice
[function]
[call site]
03594
cram_first_slice
[function]
[call site]
03595
cram_free_container
[function]
[call site]
03596
cram_read_container
[function]
[call site]
03597
cram_seek
[function]
[call site]
03598
cram_free_container
[function]
[call site]
03599
cram_read_container
[function]
[call site]
03600
cram_read_block
[function]
[call site]
03601
cram_decode_compression_header
[function]
[call site]
03602
calloc
[call site]
03603
cram_uncompress_block
[function]
[call site]
03604
kh_init_map
[function]
[call site]
03605
cram_free_compression_header
[function]
[call site]
03606
cram_free_compression_header
[function]
[call site]
03607
kh_put_map
[function]
[call site]
03608
cram_free_compression_header
[function]
[call site]
03609
kh_put_map
[function]
[call site]
03610
cram_free_compression_header
[function]
[call site]
03611
kh_put_map
[function]
[call site]
03612
cram_free_compression_header
[function]
[call site]
03613
kh_put_map
[function]
[call site]
03614
cram_free_compression_header
[function]
[call site]
03615
cram_free_compression_header
[function]
[call site]
03616
kh_put_map
[function]
[call site]
03617
cram_free_compression_header
[function]
[call site]
03618
cram_decode_TD
[function]
[call site]
03619
cram_new_block
[function]
[call site]
03620
hts_log
[function]
[call site]
03621
cram_free_block
[function]
[call site]
03622
cram_free_block
[function]
[call site]
03623
cram_free_block
[function]
[call site]
03624
block_append
[function]
[call site]
03625
block_append_char
[function]
[call site]
03626
calloc
[call site]
03627
cram_free_block
[function]
[call site]
03628
cram_free_block
[function]
[call site]
03629
cram_free_compression_header
[function]
[call site]
03630
kh_put_map
[function]
[call site]
03631
cram_free_compression_header
[function]
[call site]
03632
hts_log
[function]
[call site]
03633
cram_free_compression_header
[function]
[call site]
03634
cram_free_compression_header
[function]
[call site]
03635
cram_free_compression_header
[function]
[call site]
03636
hts_log
[function]
[call site]
03637
hts_log
[function]
[call site]
03638
cram_decoder_init
[function]
[call site]
03639
cram_encoding2str
[function]
[call site]
03640
hts_log
[function]
[call site]
03641
cram_free_compression_header
[function]
[call site]
03642
cram_free_compression_header
[function]
[call site]
03643
cram_free_compression_header
[function]
[call site]
03644
cram_free_compression_header
[function]
[call site]
03645
cram_decoder_init
[function]
[call site]
03646
cram_free_compression_header
[function]
[call site]
03647
cram_free_compression_header
[function]
[call site]
03648
sam_hrecs_sort_order
[function]
[call site]
03649
TYPEKEY
[function]
[call site]
03650
kh_get_sam_hrecs_t
[function]
[call site]
03651
strcmp
[call site]
03652
strcmp
[call site]
03653
strcmp
[call site]
03654
strcmp
[call site]
03655
hts_log
[function]
[call site]
03656
pthread_mutex_lock
[call site]
03657
pthread_mutex_unlock
[call site]
03658
cram_free_slice
[function]
[call site]
03659
cram_free_container
[function]
[call site]
03660
cram_read_container
[function]
[call site]
03661
cram_free_container
[function]
[call site]
03662
cram_free_container
[function]
[call site]
03663
cram_free_container
[function]
[call site]
03664
cram_seek
[function]
[call site]
03665
cram_free_container
[function]
[call site]
03666
cram_read_block
[function]
[call site]
03667
cram_decode_compression_header
[function]
[call site]
03668
sam_hrecs_sort_order
[function]
[call site]
03669
pthread_mutex_lock
[call site]
03670
pthread_mutex_unlock
[call site]
03671
cram_free_container
[function]
[call site]
03672
cram_read_slice
[function]
[call site]
03673
cram_read_block
[function]
[call site]
03674
calloc
[call site]
03675
cram_decode_slice_header
[function]
[call site]
03676
cram_uncompress_block
[function]
[call site]
03677
calloc
[call site]
03678
hts_log
[function]
[call site]
03679
cram_content_type2str
[function]
[call site]
03680
hts_log
[function]
[call site]
03681
hts_log
[function]
[call site]
03682
calloc
[call site]
03683
cram_read_block
[function]
[call site]
03684
calloc
[call site]
03685
cram_new_block
[function]
[call site]
03686
cram_new_block
[function]
[call site]
03687
cram_new_block
[function]
[call site]
03688
cram_new_block
[function]
[call site]
03689
cram_new_block
[function]
[call site]
03690
cram_new_block
[function]
[call site]
03691
cram_free_block
[function]
[call site]
03692
cram_free_slice
[function]
[call site]
03693
cram_free_slice
[function]
[call site]
03694
cram_free_slice
[function]
[call site]
03695
cram_free_slice
[function]
[call site]
03696
cram_decode_slice_mt
[function]
[call site]
03697
cram_decode_slice
[function]
[call site]
03698
hts_tpool_process_sz
[function]
[call site]
03699
pthread_mutex_lock
[call site]
03700
pthread_mutex_unlock
[call site]
03701
__errno_location
[call site]
03702
__errno_location
[call site]
03703
hts_tpool_dispatch2
[function]
[call site]
03704
cram_decode_slice_thread
[function]
[call site]
03705
cram_decode_slice
[function]
[call site]
03706
__errno_location
[call site]
03707
__errno_location
[call site]
03708
hts_log
[function]
[call site]
03709
cram_free_slice
[function]
[call site]
03710
hts_tpool_process_len
[function]
[call site]
03711
pthread_mutex_lock
[call site]
03712
pthread_mutex_unlock
[call site]
03713
hts_tpool_process_qsize
[function]
[call site]
03714
hts_tpool_process_empty
[function]
[call site]
03715
hts_tpool_next_result_wait
[function]
[call site]
03716
hts_tpool_result_data
[function]
[call site]
03717
hts_log
[function]
[call site]
03718
hts_tpool_result_data
[function]
[call site]
03719
hts_log
[function]
[call site]
03720
hts_tpool_delete_result
[function]
[call site]
03721
hts_tpool_delete_result
[function]
[call site]
03722
cram_free_slice
[function]
[call site]
03723
cram_free_slice
[function]
[call site]
03724
cram_to_bam
[function]
[call site]
03725
strlen
[call site]
03726
append_uint64
[function]
[call site]
03727
append_uint32
[function]
[call site]
03728
append_uint32
[function]
[call site]
03729
append_sub32
[function]
[call site]
03730
append_uint32
[function]
[call site]
03731
append_sub32
[function]
[call site]
03732
append_uint64
[function]
[call site]
03733
bam_set1
[function]
[call site]
03734
bam_cigar2rqlens
[function]
[call site]
03735
hts_log
[function]
[call site]
03736
__errno_location
[call site]
03737
hts_log
[function]
[call site]
03738
__errno_location
[call site]
03739
hts_log
[function]
[call site]
03740
__errno_location
[call site]
03741
hts_log
[function]
[call site]
03742
__errno_location
[call site]
03743
subtract_check_underflow
[function]
[call site]
03744
subtract_check_underflow
[function]
[call site]
03745
subtract_check_underflow
[function]
[call site]
03746
subtract_check_underflow
[function]
[call site]
03747
subtract_check_underflow
[function]
[call site]
03748
hts_log
[function]
[call site]
03749
__errno_location
[call site]
03750
realloc_bam_data
[function]
[call site]
03751
hts_reg2bin
[function]
[call site]
03752
strncpy
[call site]
03753
cram_eof
[function]
[call site]
03754
bam_tag2cigar
[function]
[call site]
03755
sam_read1_sam
[function]
[call site]
03756
sam_parse1
[function]
[call site]
03757
strchr
[call site]
03758
hts_log
[function]
[call site]
03759
hts_log
[function]
[call site]
03760
possibly_expand_bam_data
[function]
[call site]
03761
parse_sam_flag
[function]
[call site]
03762
hts_str2uint
[function]
[call site]
03763
strtoul
[call site]
03764
strchr
[call site]
03765
strcmp
[call site]
03766
hts_log
[function]
[call site]
03767
bam_name2id
[function]
[call site]
03768
sam_hdr_name2tid
[function]
[call site]
03769
sam_hdr_fill_hrecs
[function]
[call site]
03770
kh_get_m_s2i
[function]
[call site]
03771
hts_log
[function]
[call site]
03772
hts_strprint
[function]
[call site]
03773
isprint_c
[function]
[call site]
03774
__ctype_b_loc
[call site]
03775
strcpy
[call site]
03776
snprintf
[call site]
03777
hts_log
[function]
[call site]
03778
hts_str2uint
[function]
[call site]
03779
hts_log
[function]
[call site]
03780
hts_str2uint
[function]
[call site]
03781
bam_parse_cigar
[function]
[call site]
03782
hts_log
[function]
[call site]
03783
read_ncigar
[function]
[call site]
03784
isdigit_c
[function]
[call site]
03785
hts_log
[function]
[call site]
03786
hts_log
[function]
[call site]
03787
possibly_expand_bam_data
[function]
[call site]
03788
hts_log
[function]
[call site]
03789
parse_cigar
[function]
[call site]
03790
hts_str2uint
[function]
[call site]
03791
hts_log
[function]
[call site]
03792
hts_log
[function]
[call site]
03793
hts_log
[function]
[call site]
03794
bam_cigar2rlen
[function]
[call site]
03795
hts_log
[function]
[call site]
03796
strchr
[call site]
03797
hts_log
[function]
[call site]
03798
hts_reg2bin
[function]
[call site]
03799
strchr
[call site]
03800
strcmp
[call site]
03801
strcmp
[call site]
03802
bam_name2id
[function]
[call site]
03803
hts_log
[function]
[call site]
03804
hts_strprint
[function]
[call site]
03805
hts_log
[function]
[call site]
03806
hts_str2uint
[function]
[call site]
03807
hts_log
[function]
[call site]
03808
hts_str2int
[function]
[call site]
03809
hts_log
[function]
[call site]
03810
strchr
[call site]
03811
strcmp
[call site]
03812
hts_log
[function]
[call site]
03813
bam_cigar2qlen
[function]
[call site]
03814
hts_log
[function]
[call site]
03815
possibly_expand_bam_data
[function]
[call site]
03816
possibly_expand_bam_data
[function]
[call site]
03817
hts_log
[function]
[call site]
03818
hts_log
[function]
[call site]
03819
aux_parse
[function]
[call site]
03820
hts_log
[function]
[call site]
03821
isspace_c
[function]
[call site]
03822
hts_log
[function]
[call site]
03823
isspace_c
[function]
[call site]
03824
isspace_c
[function]
[call site]
03825
kh_get_tag
[function]
[call site]
03826
possibly_expand_bam_data
[function]
[call site]
03827
isspace_c
[function]
[call site]
03828
hts_log
[function]
[call site]
03829
possibly_expand_bam_data
[function]
[call site]
03830
hts_str2int
[function]
[call site]
03831
i16_to_le
[function]
[call site]
03832
u16_to_le
[function]
[call site]
03833
i32_to_le
[function]
[call site]
03834
u32_to_le
[function]
[call site]
03835
hts_str2uint
[function]
[call site]
03836
u16_to_le
[function]
[call site]
03837
u32_to_le
[function]
[call site]
03838
strtod
[call site]
03839
float_to_le
[function]
[call site]
03840
u32_to_le
[function]
[call site]
03841
strtod
[call site]
03842
double_to_le
[function]
[call site]
03843
u64_to_le
[function]
[call site]
03844
strchr
[call site]
03845
strlen
[call site]
03846
isspace_c
[function]
[call site]
03847
hts_log
[function]
[call site]
03848
possibly_expand_bam_data
[function]
[call site]
03849
isspace_c
[function]
[call site]
03850
hts_log
[function]
[call site]
03851
sam_parse_B_vals
[function]
[call site]
03852
sam_parse_B_vals_r
[function]
[call site]
03853
hts_log
[function]
[call site]
03854
aux_type2size
[function]
[call site]
03855
hts_log
[function]
[call site]
03856
possibly_expand_bam_data
[function]
[call site]
03857
hts_log
[function]
[call site]
03858
sam_parse_Bc_vals
[function]
[call site]
03859
grow_B_array
[function]
[call site]
03860
__errno_location
[call site]
03861
possibly_expand_bam_data
[function]
[call site]
03862
hts_log
[function]
[call site]
03863
hts_str2int
[function]
[call site]
03864
sam_parse_BC_vals
[function]
[call site]
03865
grow_B_array
[function]
[call site]
03866
hts_str2uint
[function]
[call site]
03867
sam_parse_Bs_vals
[function]
[call site]
03868
grow_B_array
[function]
[call site]
03869
hts_str2int
[function]
[call site]
03870
i16_to_le
[function]
[call site]
03871
sam_parse_BS_vals
[function]
[call site]
03872
grow_B_array
[function]
[call site]
03873
hts_str2uint
[function]
[call site]
03874
u16_to_le
[function]
[call site]
03875
sam_parse_Bi_vals
[function]
[call site]
03876
grow_B_array
[function]
[call site]
03877
hts_str2int
[function]
[call site]
03878
i32_to_le
[function]
[call site]
03879
sam_parse_BI_vals
[function]
[call site]
03880
grow_B_array
[function]
[call site]
03881
hts_str2uint
[function]
[call site]
03882
u32_to_le
[function]
[call site]
03883
sam_parse_Bf_vals
[function]
[call site]
03884
grow_B_array
[function]
[call site]
03885
strtod
[call site]
03886
float_to_le
[function]
[call site]
03887
hts_log
[function]
[call site]
03888
i32_to_le
[function]
[call site]
03889
hts_str2int
[function]
[call site]
03890
sam_parse_B_vals_r
[function]
[call site]
03891
sam_parse_B_vals_r
[function]
[call site]
03892
sam_parse_B_vals_r
[function]
[call site]
03893
sam_parse_B_vals_r
[function]
[call site]
03894
sam_parse_B_vals_r
[function]
[call site]
03895
sam_parse_B_vals_r
[function]
[call site]
03896
hts_log
[function]
[call site]
03897
isspace_c
[function]
[call site]
03898
hts_strprint
[function]
[call site]
03899
hts_log
[function]
[call site]
03900
isspace_c
[function]
[call site]
03901
hts_log
[function]
[call site]
03902
bam_tag2cigar
[function]
[call site]
03903
sam_state_destroy
[function]
[call site]
03904
__errno_location
[call site]
03905
bgzf_seek
[function]
[call site]
03906
bgzf_seek_common
[function]
[call site]
03907
sam_hdr_fill_hrecs
[function]
[call site]
03908
pthread_create
[call site]
03909
sam_dispatcher_read
[function]
[call site]
03910
ks_resize
[function]
[call site]
03911
pthread_mutex_lock
[call site]
03912
pthread_cond_signal
[call site]
03913
pthread_mutex_unlock
[call site]
03914
hts_tpool_process_shutdown
[function]
[call site]
03915
pthread_mutex_unlock
[call site]
03916
pthread_mutex_lock
[call site]
03917
pthread_mutex_unlock
[call site]
03918
calloc
[call site]
03919
realloc
[call site]
03920
bgzf_read
[function]
[call site]
03921
hread
[function]
[call site]
03922
__errno_location
[call site]
03923
sam_state_err
[function]
[call site]
03924
realloc
[call site]
03925
__assert_fail
[call site]
03926
__assert_fail
[call site]
03927
__assert_fail
[call site]
03928
ks_resize
[function]
[call site]
03929
hts_tpool_dispatch3
[function]
[call site]
03930
sam_parse_worker
[function]
[call site]
03931
pthread_mutex_lock
[call site]
03932
pthread_mutex_unlock
[call site]
03933
calloc
[call site]
03934
calloc
[call site]
03935
sam_state_err
[function]
[call site]
03936
sam_state_err
[function]
[call site]
03937
realloc
[call site]
03938
sam_state_err
[function]
[call site]
03939
strchr
[call site]
03940
sam_parse1
[function]
[call site]
03941
__errno_location
[call site]
03942
sam_state_err
[function]
[call site]
03943
cleanup_sp_lines
[function]
[call site]
03944
__assert_fail
[call site]
03945
sam_free_sp_bams
[function]
[call site]
03946
pthread_mutex_lock
[call site]
03947
pthread_mutex_unlock
[call site]
03948
sam_free_sp_bams
[function]
[call site]
03949
cleanup_sp_lines
[function]
[call site]
03950
cleanup_sp_bams
[function]
[call site]
03951
sam_free_sp_bams
[function]
[call site]
03952
pthread_mutex_lock
[call site]
03953
pthread_mutex_unlock
[call site]
03954
pthread_mutex_unlock
[call site]
03955
hts_tpool_dispatch
[function]
[call site]
03956
sam_parse_eof
[function]
[call site]
03957
pthread_mutex_lock
[call site]
03958
pthread_cond_wait
[call site]
03959
pthread_cond_signal
[call site]
03960
pthread_mutex_unlock
[call site]
03961
hts_tpool_process_shutdown
[function]
[call site]
03962
pthread_mutex_unlock
[call site]
03963
pthread_mutex_lock
[call site]
03964
pthread_cond_signal
[call site]
03965
pthread_mutex_unlock
[call site]
03966
pthread_mutex_unlock
[call site]
03967
__errno_location
[call site]
03968
sam_state_err
[function]
[call site]
03969
hts_tpool_process_shutdown
[function]
[call site]
03970
hts_log
[function]
[call site]
03971
__errno_location
[call site]
03972
pthread_mutex_lock
[call site]
03973
pthread_mutex_unlock
[call site]
03974
hts_tpool_next_result_wait
[function]
[call site]
03975
hts_tpool_result_data
[function]
[call site]
03976
hts_tpool_delete_result
[function]
[call site]
03977
pthread_mutex_lock
[call site]
03978
pthread_mutex_unlock
[call site]
03979
bam_copy1
[function]
[call site]
03980
realloc_bam_data
[function]
[call site]
03981
pthread_mutex_lock
[call site]
03982
pthread_mutex_unlock
[call site]
03983
hts_getline
[function]
[call site]
03984
sam_parse1
[function]
[call site]
03985
hts_log
[function]
[call site]
03986
fastq_state_init
[function]
[call site]
03987
fastq_parse1
[function]
[call site]
03988
hts_getline
[function]
[call site]
03989
strpbrk
[call site]
03990
isspace_c
[function]
[call site]
03991
isspace_c
[function]
[call site]
03992
hts_getline
[function]
[call site]
03993
kputsn
[function]
[call site]
03994
hts_getline
[function]
[call site]
03995
kputsn
[function]
[call site]
03996
isdigit_c
[function]
[call site]
03997
bam_set1
[function]
[call site]
03998
isdigit_c
[function]
[call site]
03999
strtol
[call site]
04000
isdigit_c
[function]
[call site]
04001
isspace_c
[function]
[call site]
04002
bam_aux_append
[function]
[call site]
04003
__assert_fail
[call site]
04004
realloc_bam_data
[function]
[call site]
04005
__errno_location
[call site]
04006
aux_parse
[function]
[call site]
04007
__errno_location
[call site]
04008
__errno_location
[call site]
04009
sam_passes_filter
[function]
[call site]
04010
hts_filter_eval2
[function]
[call site]
04011
ks_free
[function]
[call site]
04012
hts_filter_eval_
[function]
[call site]
04013
expression
[function]
[call site]
04014
and_expr
[function]
[call site]
04015
eq_expr
[function]
[call site]
04016
cmp_expr
[function]
[call site]
04017
bitor_expr
[function]
[call site]
04018
bitxor_expr
[function]
[call site]
04019
bitand_expr
[function]
[call site]
04020
add_expr
[function]
[call site]
04021
mul_expr
[function]
[call site]
04022
unary_expr
[function]
[call site]
04023
ws
[function]
[call site]
04024
simple_expr
[function]
[call site]
04025
ws
[function]
[call site]
04026
expression
[function]
[call site]
04027
ws
[function]
[call site]
04028
fprintf
[call site]
04029
hts_str2dbl
[function]
[call site]
04030
ks_clear
[function]
[call site]
04034
kputsn
[function]
[call site]
04035
func_expr
[function]
[call site]
04036
strncmp
[call site]
04037
expression
[function]
[call site]
04038
expr_func_avg
[function]
[call site]
04039
strncmp
[call site]
04040
expression
[function]
[call site]
04041
ws
[function]
[call site]
04042
expression
[function]
[call site]
04043
hts_expr_val_existsT
[function]
[call site]
04044
hts_expr_val_exists
[function]
[call site]
04045
hts_expr_val_free
[function]
[call site]
04046
ks_free
[function]
[call site]
04047
strncmp
[call site]
04048
expression
[function]
[call site]
04049
hts_expr_val_existsT
[function]
[call site]
04050
strncmp
[call site]
04051
expression
[function]
[call site]
04052
exp
[call site]
04053
hts_expr_val_undef
[function]
[call site]
04054
ks_clear
[function]
[call site]
04055
strncmp
[call site]
04056
expression
[function]
[call site]
04057
expr_func_length
[function]
[call site]
04058
strncmp
[call site]
04059
expression
[function]
[call site]
04060
log
[call site]
04061
hts_expr_val_undef
[function]
[call site]
04062
strncmp
[call site]
04063
expression
[function]
[call site]
04064
expr_func_min
[function]
[call site]
04065
strncmp
[call site]
04066
expression
[function]
[call site]
04067
expr_func_max
[function]
[call site]
04068
strncmp
[call site]
04069
expression
[function]
[call site]
04070
ws
[function]
[call site]
04071
expression
[function]
[call site]
04072
hts_expr_val_exists
[function]
[call site]
04073
hts_expr_val_undef
[function]
[call site]
04074
hts_expr_val_free
[function]
[call site]
04075
pow
[call site]
04076
hts_expr_val_free
[function]
[call site]
04077
hts_expr_val_undef
[function]
[call site]
04078
strncmp
[call site]
04079
expression
[function]
[call site]
04080
sqrt
[call site]
04081
hts_expr_val_undef
[function]
[call site]
04082
ws
[function]
[call site]
04083
fprintf
[call site]
04084
hts_expr_val_exists
[function]
[call site]
04085
hts_expr_val_undef
[function]
[call site]
04086
unary_expr
[function]
[call site]
04087
hts_expr_val_exists
[function]
[call site]
04088
unary_expr
[function]
[call site]
04089
hts_expr_val_exists
[function]
[call site]
04090
hts_expr_val_undef
[function]
[call site]
04091
hts_expr_val_exists
[function]
[call site]
04092
hts_expr_val_undef
[function]
[call site]
04093
simple_expr
[function]
[call site]
04094
ws
[function]
[call site]
04095
unary_expr
[function]
[call site]
04096
hts_expr_val_exists
[function]
[call site]
04097
hts_expr_val_undef
[function]
[call site]
04098
hts_expr_val_free
[function]
[call site]
04099
hts_expr_val_undef
[function]
[call site]
04100
hts_expr_val_exists
[function]
[call site]
04101
hts_expr_val_free
[function]
[call site]
04102
ws
[function]
[call site]
04103
mul_expr
[function]
[call site]
04104
hts_expr_val_exists
[function]
[call site]
04105
hts_expr_val_free
[function]
[call site]
04106
hts_expr_val_undef
[function]
[call site]
04107
hts_expr_val_free
[function]
[call site]
04108
ws
[function]
[call site]
04109
add_expr
[function]
[call site]
04110
hts_expr_val_exists
[function]
[call site]
04111
hts_expr_val_free
[function]
[call site]
04112
hts_expr_val_free
[function]
[call site]
04113
hts_expr_val_undef
[function]
[call site]
04114
ws
[function]
[call site]
04115
bitand_expr
[function]
[call site]
04116
hts_expr_val_exists
[function]
[call site]
04117
hts_expr_val_free
[function]
[call site]
04118
hts_expr_val_free
[function]
[call site]
04119
hts_expr_val_undef
[function]
[call site]
04120
ws
[function]
[call site]
04121
bitxor_expr
[function]
[call site]
04122
hts_expr_val_exists
[function]
[call site]
04123
hts_expr_val_free
[function]
[call site]
04124
hts_expr_val_free
[function]
[call site]
04125
hts_expr_val_undef
[function]
[call site]
04126
ws
[function]
[call site]
04127
cmp_expr
[function]
[call site]
04128
hts_expr_val_exists
[function]
[call site]
04129
hts_expr_val_undef
[function]
[call site]
04130
strcmp
[call site]
04131
cmp_expr
[function]
[call site]
04132
hts_expr_val_exists
[function]
[call site]
04133
hts_expr_val_undef
[function]
[call site]
04134
strcmp
[call site]
04135
cmp_expr
[function]
[call site]
04136
hts_expr_val_exists
[function]
[call site]
04137
hts_expr_val_undef
[function]
[call site]
04138
strcmp
[call site]
04139
cmp_expr
[function]
[call site]
04140
hts_expr_val_exists
[function]
[call site]
04141
hts_expr_val_undef
[function]
[call site]
04142
strcmp
[call site]
04143
hts_expr_val_exists
[function]
[call site]
04144
hts_expr_val_undef
[function]
[call site]
04145
hts_expr_val_free
[function]
[call site]
04146
ws
[function]
[call site]
04147
eq_expr
[function]
[call site]
04148
hts_expr_val_exists
[function]
[call site]
04149
hts_expr_val_undef
[function]
[call site]
04150
strcmp
[call site]
04151
eq_expr
[function]
[call site]
04152
hts_expr_val_exists
[function]
[call site]
04153
hts_expr_val_undef
[function]
[call site]
04154
strcmp
[call site]
04155
eq_expr
[function]
[call site]
04156
hts_expr_val_free
[function]
[call site]
04157
regcomp
[call site]
04158
regerror
[call site]
04159
fprintf
[call site]
04160
hts_expr_val_free
[function]
[call site]
04161
regexec
[call site]
04162
regfree
[call site]
04163
hts_expr_val_exists
[function]
[call site]
04164
hts_expr_val_undef
[function]
[call site]
04165
hts_expr_val_free
[function]
[call site]
04166
ws
[function]
[call site]
04167
eq_expr
[function]
[call site]
04168
hts_expr_val_existsT
[function]
[call site]
04169
hts_expr_val_undef
[function]
[call site]
04170
eq_expr
[function]
[call site]
04171
hts_expr_val_existsT
[function]
[call site]
04172
hts_expr_val_undef
[function]
[call site]
04173
hts_expr_val_existsT
[function]
[call site]
04174
hts_expr_val_undef
[function]
[call site]
04175
hts_expr_val_existsT
[function]
[call site]
04176
hts_expr_val_undef
[function]
[call site]
04177
hts_expr_val_free
[function]
[call site]
04178
ws
[function]
[call site]
04179
fprintf
[call site]
04180
hts_expr_val_exists
[function]
[call site]
04181
bam_sym_lookup
[function]
[call site]
04182
memcmp
[call site]
04183
ks_clear
[function]
[call site]
04184
kputw
[function]
[call site]
04185
kputc_
[function]
[call site]
04186
kputs
[function]
[call site]
04187
kputs
[function]
[call site]
04188
memcmp
[call site]
04189
bam_endpos
[function]
[call site]
04190
memcmp
[call site]
04191
memcmp
[call site]
04192
memcmp
[call site]
04193
memcmp
[call site]
04194
memcmp
[call site]
04195
memcmp
[call site]
04196
memcmp
[call site]
04197
memcmp
[call site]
04198
memcmp
[call site]
04199
memcmp
[call site]
04200
memcmp
[call site]
04201
memcmp
[call site]
04202
memcmp
[call site]
04203
hts_log
[function]
[call site]
04204
memcmp
[call site]
04205
memcmp
[call site]
04206
bam_get_library
[function]
[call site]
04207
bam_aux_get
[function]
[call site]
04208
sam_hdr_find_tag_id
[function]
[call site]
04209
ks_clear
[function]
[call site]
04210
kputs
[function]
[call site]
04211
memcmp
[call site]
04212
memcmp
[call site]
04213
memcmp
[call site]
04214
sam_hdr_tid2name
[function]
[call site]
04215
ks_clear
[function]
[call site]
04216
kputs
[function]
[call site]
04217
memcmp
[call site]
04218
memcmp
[call site]
04219
memcmp
[call site]
04220
memcmp
[call site]
04221
memcmp
[call site]
04222
bam_cigar2qlen
[function]
[call site]
04223
memcmp
[call site]
04224
ks_clear
[function]
[call site]
04225
kputs
[function]
[call site]
04226
memcmp
[call site]
04227
ks_clear
[function]
[call site]
04228
ks_resize
[function]
[call site]
04229
memcmp
[call site]
04230
bam_cigar2rlen
[function]
[call site]
04231
memcmp
[call site]
04232
sam_hdr_tid2name
[function]
[call site]
04233
ks_clear
[function]
[call site]
04234
kputs
[function]
[call site]
04235
memcmp
[call site]
04236
sam_hdr_tid2name
[function]
[call site]
04237
ks_clear
[function]
[call site]
04238
kputs
[function]
[call site]
04239
memcmp
[call site]
04240
memcmp
[call site]
04241
ks_clear
[function]
[call site]
04242
ks_resize
[function]
[call site]
04243
nibble2base
[function]
[call site]
04244
memcmp
[call site]
04245
memcmp
[call site]
04246
bam_aux_get
[function]
[call site]
04247
ks_clear
[function]
[call site]
04248
kputs
[function]
[call site]
04249
ks_clear
[function]
[call site]
04250
kputsn
[function]
[call site]
04251
bam_aux2i
[function]
[call site]
04252
get_int_aux_val
[function]
[call site]
04253
le_to_i8
[function]
[call site]
04254
le_to_i16
[function]
[call site]
04255
le_to_u16
[function]
[call site]
04256
le_to_i32
[function]
[call site]
04257
le_to_u32
[function]
[call site]
04258
__errno_location
[call site]
04259
bam_aux2f
[function]
[call site]
04260
le_to_double
[function]
[call site]
04261
le_to_float
[function]
[call site]
04262
get_int_aux_val
[function]
[call site]
04263
hts_log
[function]
[call site]
04264
hts_log
[function]
[call site]
04265
hts_expr_val_free
[function]
[call site]
04266
hts_expr_val_free
[function]
[call site]
04267
sam_write1
[function]
[call site]
04268
bam_write_idx1
[function]
[call site]
04269
bam_write1
[function]
[call site]
04270
hts_log
[function]
[call site]
04271
__errno_location
[call site]
04272
hts_log
[function]
[call site]
04273
bgzf_flush_try
[function]
[call site]
04274
lazy_flush
[function]
[call site]
04275
ed_swap_4p
[function]
[call site]
04276
ed_swap_4p
[function]
[call site]
04277
bgzf_write_small
[function]
[call site]
04278
bgzf_write
[function]
[call site]
04279
swap_data
[function]
[call site]
04280
bgzf_write_small
[function]
[call site]
04281
bgzf_write_small
[function]
[call site]
04282
bgzf_write_small
[function]
[call site]
04283
bgzf_write_small
[function]
[call site]
04284
bam_cigar2rlen
[function]
[call site]
04285
hts_log
[function]
[call site]
04286
u32_to_le
[function]
[call site]
04287
u32_to_le
[function]
[call site]
04288
bgzf_write_small
[function]
[call site]
04289
bgzf_write_small
[function]
[call site]
04290
bgzf_write_small
[function]
[call site]
04291
u32_to_le
[function]
[call site]
04292
bgzf_write_small
[function]
[call site]
04293
bgzf_write_small
[function]
[call site]
04294
swap_data
[function]
[call site]
04295
bgzf_flush_try
[function]
[call site]
04296
hts_idx_amend_last
[function]
[call site]
04297
bam_write1
[function]
[call site]
04298
bam_endpos
[function]
[call site]
04299
bgzf_idx_push
[function]
[call site]
04300
hts_idx_push
[function]
[call site]
04301
hts_idx_check_range
[function]
[call site]
04302
hts_idx_maxpos
[function]
[call site]
04303
hts_bin_maxpos
[function]
[call site]
04304
idx_format_name
[function]
[call site]
04305
hts_log
[function]
[call site]
04306
__errno_location
[call site]
04307
realloc
[call site]
04308
realloc
[call site]
04309
hts_log
[function]
[call site]
04310
hts_log
[function]
[call site]
04311
hts_log
[function]
[call site]
04312
hts_log
[function]
[call site]
04313
kh_init_bin
[function]
[call site]
04314
calloc
[call site]
04315
insert_to_l
[function]
[call site]
04316
realloc
[call site]
04317
hts_reg2bin
[function]
[call site]
04318
insert_to_b
[function]
[call site]
04319
kh_put_bin
[function]
[call site]
04320
kh_resize_bin
[function]
[call site]
04321
realloc
[call site]
04322
calloc
[call site]
04323
kh_del_bin
[function]
[call site]
04324
realloc
[call site]
04325
insert_to_b
[function]
[call site]
04326
insert_to_b
[function]
[call site]
04327
hts_idx_check_range
[function]
[call site]
04328
realloc
[call site]
04329
pthread_mutex_unlock
[call site]
04330
pthread_mutex_unlock
[call site]
04331
sam_hdr_tid2name
[function]
[call site]
04332
sam_hdr_tid2len
[function]
[call site]
04333
kh_get_s2i
[function]
[call site]
04334
hts_log
[function]
[call site]
04335
cram_put_bam_seq
[function]
[call site]
04336
cram_new_container
[function]
[call site]
04337
pthread_mutex_lock
[call site]
04338
pthread_mutex_unlock
[call site]
04339
hts_log
[function]
[call site]
04340
pthread_mutex_lock
[call site]
04341
hts_log
[function]
[call site]
04342
pthread_mutex_unlock
[call site]
04343
cram_next_container
[function]
[call site]
04344
cram_update_curr_slice
[function]
[call site]
04345
hts_log
[function]
[call site]
04346
cram_flush_container_mt
[function]
[call site]
04347
cram_free_slice
[function]
[call site]
04348
cram_free_container
[function]
[call site]
04349
cram_new_container
[function]
[call site]
04350
pthread_mutex_lock
[call site]
04351
pthread_mutex_unlock
[call site]
04352
cram_new_slice
[function]
[call site]
04353
calloc
[call site]
04354
calloc
[call site]
04355
cram_new_block
[function]
[call site]
04356
cram_new_block
[function]
[call site]
04357
cram_new_block
[function]
[call site]
04358
cram_new_block
[function]
[call site]
04359
cram_new_block
[function]
[call site]
04360
cram_new_block
[function]
[call site]
04361
string_pool_create
[function]
[call site]
04362
kh_init_m_s2i
[function]
[call site]
04363
kh_init_m_s2i
[function]
[call site]
04364
cram_free_slice
[function]
[call site]
04365
pthread_mutex_lock
[call site]
04366
hts_log
[function]
[call site]
04367
pthread_mutex_unlock
[call site]
04368
pthread_mutex_lock
[call site]
04369
calloc
[call site]
04370
pthread_mutex_unlock
[call site]
04371
pthread_mutex_lock
[call site]
04372
calloc
[call site]
04373
pthread_mutex_unlock
[call site]
04374
pthread_mutex_lock
[call site]
04375
pthread_mutex_unlock
[call site]
04376
pthread_mutex_lock
[call site]
04377
calloc
[call site]
04378
pthread_mutex_unlock
[call site]
04379
pthread_mutex_unlock
[call site]
04380
bam_copy1
[function]
[call site]
04381
bam_dup1
[function]
[call site]
04382
bam_init1
[function]
[call site]
04383
bam_copy1
[function]
[call site]
04384
bam_destroy1
[function]
[call site]
04385
bam_cigar2qlen
[function]
[call site]
04386
hts_log
[function]
[call site]
04387
pthread_create
[call site]
04388
sam_dispatcher_write
[function]
[call site]
04389
hts_tpool_next_result_wait
[function]
[call site]
04390
hts_tpool_result_data
[function]
[call site]
04391
sam_state_err
[function]
[call site]
04392
bgzf_flush_try
[function]
[call site]
04393
bgzf_write
[function]
[call site]
04394
hwrite
[function]
[call site]
04395
bam_endpos
[function]
[call site]
04396
bgzf_idx_push
[function]
[call site]
04397
__errno_location
[call site]
04398
sam_state_err
[function]
[call site]
04399
sam_hdr_tid2name
[function]
[call site]
04400
sam_hdr_tid2len
[function]
[call site]
04401
hts_log
[function]
[call site]
04402
bam_endpos
[function]
[call site]
04403
hts_idx_push
[function]
[call site]
04404
__errno_location
[call site]
04405
sam_state_err
[function]
[call site]
04406
sam_hdr_tid2name
[function]
[call site]
04407
sam_hdr_tid2len
[function]
[call site]
04408
hts_log
[function]
[call site]
04409
__assert_fail
[call site]
04410
pthread_mutex_lock
[call site]
04411
pthread_mutex_unlock
[call site]
04412
bgzf_write
[function]
[call site]
04413
bgzf_flush_try
[function]
[call site]
04414
bgzf_write
[function]
[call site]
04415
hwrite
[function]
[call site]
04416
hts_tpool_delete_result
[function]
[call site]
04417
pthread_mutex_lock
[call site]
04418
pthread_mutex_unlock
[call site]
04419
sam_state_err
[function]
[call site]
04420
hts_tpool_process_shutdown
[function]
[call site]
04421
__errno_location
[call site]
04422
sam_state_err
[function]
[call site]
04423
hts_log
[function]
[call site]
04424
pthread_mutex_lock
[call site]
04425
pthread_mutex_unlock
[call site]
04426
pthread_mutex_unlock
[call site]
04427
calloc
[call site]
04428
calloc
[call site]
04429
bam_copy1
[function]
[call site]
04430
pthread_mutex_lock
[call site]
04431
pthread_mutex_unlock
[call site]
04432
hts_tpool_dispatch3
[function]
[call site]
04433
sam_format_worker
[function]
[call site]
04434
cleanup_sp_bams
[function]
[call site]
04435
cleanup_sp_lines
[function]
[call site]
04436
pthread_mutex_unlock
[call site]
04437
pthread_mutex_unlock
[call site]
04438
sam_format1
[function]
[call site]
04439
sam_format1_append
[function]
[call site]
04440
kputc
[function]
[call site]
04441
bgzf_flush_try
[function]
[call site]
04442
bgzf_write
[function]
[call site]
04443
hwrite
[function]
[call site]
04444
bam_endpos
[function]
[call site]
04445
bgzf_idx_push
[function]
[call site]
04446
sam_hdr_tid2name
[function]
[call site]
04447
sam_hdr_tid2len
[function]
[call site]
04448
hts_log
[function]
[call site]
04449
bam_endpos
[function]
[call site]
04450
hts_idx_push
[function]
[call site]
04451
sam_hdr_tid2name
[function]
[call site]
04452
sam_hdr_tid2len
[function]
[call site]
04453
hts_log
[function]
[call site]
04454
fastq_state_init
[function]
[call site]
04455
fastq_format1
[function]
[call site]
04456
kputc
[function]
[call site]
04457
kputs
[function]
[call site]
04458
kputs
[function]
[call site]
04459
kputs
[function]
[call site]
04460
bam_aux_get
[function]
[call site]
04461
ksprintf
[function]
[call site]
04462
isupper_c
[function]
[call site]
04463
__ctype_b_loc
[call site]
04464
islower_c
[function]
[call site]
04465
__ctype_b_loc
[call site]
04466
hts_log
[function]
[call site]
04467
strlen
[call site]
04468
strlen
[call site]
04469
isalpha_c
[function]
[call site]
04470
islower_c
[function]
[call site]
04471
toupper_c
[function]
[call site]
04472
kh_get_tag
[function]
[call site]
04473
kputc_
[function]
[call site]
04474
sam_format_aux1
[function]
[call site]
04475
skip_aux
[function]
[call site]
04476
kputsn
[function]
[call site]
04477
ks_resize
[function]
[call site]
04478
kputc_
[function]
[call site]
04479
kputc_
[function]
[call site]
04480
kputc_
[function]
[call site]
04481
kputsn
[function]
[call site]
04482
kputc_
[function]
[call site]
04483
kputc_
[function]
[call site]
04484
kputc_
[function]
[call site]
04485
kputc
[function]
[call site]
04486
bgzf_flush_try
[function]
[call site]
04487
bgzf_write
[function]
[call site]
04488
hwrite
[function]
[call site]
04489
__errno_location
[call site]
04490
bam_destroy1
[function]
[call site]
04491
sam_hdr_destroy
[function]
[call site]
04492
hts_close_or_abort
[function]
[call site]
04493
hts_close
[function]
[call site]
04494
hts_close
[function]
[call site]
04495
view_sam
[function]
[call site]
04496
view_sam
[function]
[call site]
04497
view_vcf
[function]
[call site]
04498
abort
[call site]
04499
hopen
[function]
[call site]
04500
hts_hopen
[function]
[call site]
04501
hclose
[function]
[call site]
04502
abort
[call site]
04503
hts_open
[function]
[call site]
04504
abort
[call site]
04505
bcf_hdr_read
[function]
[call site]
04506
vcf_hdr_read
[function]
[call site]
04507
bcf_hdr_init
[function]
[call site]
04508
calloc
[call site]
04509
kh_init_vdict
[function]
[call site]
04510
calloc
[call site]
04511
kh_resize_vdict
[function]
[call site]
04512
realloc
[call site]
04513
__ac_FNV1a_hash_string
[function]
[call site]
04514
calloc
[call site]
04515
kh_init_hdict
[function]
[call site]
04516
calloc
[call site]
04517
strchr
[call site]
04518
bcf_hdr_append
[function]
[call site]
04519
bcf_hdr_parse_line
[function]
[call site]
04520
calloc
[call site]
04521
isalpha_c
[function]
[call site]
04522
isalnum_c
[function]
[call site]
04523
bcf_hrec_add_key
[function]
[call site]
04524
is_escaped
[function]
[call site]
04528
hts_strprint
[function]
[call site]
04529
hts_log
[function]
[call site]
04530
bcf_hrec_set_val
[function]
[call site]
04531
__errno_location
[call site]
04532
__errno_location
[call site]
04533
hts_log
[function]
[call site]
04534
isspace_c
[function]
[call site]
04535
hts_strprint
[function]
[call site]
04536
hts_log
[function]
[call site]
04537
bcf_hrec_destroy
[function]
[call site]
04538
hts_strprint
[function]
[call site]
04539
hts_log
[function]
[call site]
04540
bcf_hrec_destroy
[function]
[call site]
04541
bcf_hdr_add_hrec
[function]
[call site]
04542
get_hdr_aux
[function]
[call site]
04543
bcf_hrec_check
[function]
[call site]
04544
bcf_hrec_set_type
[function]
[call site]
04545
strcmp
[call site]
04546
strcmp
[call site]
04547
strcmp
[call site]
04548
strcmp
[call site]
04549
bcf_hrec_find_key
[function]
[call site]
04550
strcasecmp
[call site]
04551
bcf_hrec_find_key
[function]
[call site]
04552
strcmp
[call site]
04553
bcf_hrec_find_key
[function]
[call site]
04554
hts_log
[function]
[call site]
04555
hts_log
[function]
[call site]
04556
hts_log
[function]
[call site]
04557
bcf_hdr_register_hrec
[function]
[call site]
04558
bcf_hrec_set_type
[function]
[call site]
04559
bcf_hrec_find_key
[function]
[call site]
04560
strtoll
[call site]
04561
bcf_hrec_find_key
[function]
[call site]
04562
strdup
[call site]
04563
kh_get_vdict
[function]
[call site]
04564
strcmp
[call site]
04565
kh_put_vdict
[function]
[call site]
04566
kh_resize_vdict
[function]
[call site]
04567
bcf_hrec_find_key
[function]
[call site]
04568
strtol
[call site]
04569
kh_del_vdict
[function]
[call site]
04570
bcf_hdr_set_idx
[function]
[call site]
04571
__errno_location
[call site]
04572
hts_resize_array_
[function]
[call site]
04573
hts_log
[function]
[call site]
04574
__errno_location
[call site]
04575
realloc
[call site]
04576
__errno_location
[call site]
04577
__errno_location
[call site]
04578
strerror
[call site]
04579
hts_log
[function]
[call site]
04580
__errno_location
[call site]
04581
abort
[call site]
04582
abort
[call site]
04583
kh_del_vdict
[function]
[call site]
04584
hrec_add_idx
[function]
[call site]
04585
realloc
[call site]
04586
realloc
[call site]
04587
strdup
[call site]
04588
kputw
[function]
[call site]
04589
strcmp
[call site]
04590
strcmp
[call site]
04591
strtol
[call site]
04592
hts_log
[function]
[call site]
04593
strcmp
[call site]
04594
strcmp
[call site]
04595
strcmp
[call site]
04596
strcmp
[call site]
04597
strcmp
[call site]
04598
strcmp
[call site]
04599
hts_log
[function]
[call site]
04600
strcmp
[call site]
04601
strcmp
[call site]
04602
strcmp
[call site]
04603
strcmp
[call site]
04604
strcmp
[call site]
04605
__isoc99_sscanf
[call site]
04606
hts_log
[function]
[call site]
04607
hts_log
[function]
[call site]
04608
hts_log
[function]
[call site]
04609
strdup
[call site]
04610
kh_get_vdict
[function]
[call site]
04611
hrec_add_idx
[function]
[call site]
04612
kh_put_vdict
[function]
[call site]
04613
bcf_hdr_set_idx
[function]
[call site]
04614
kh_del_vdict
[function]
[call site]
04615
hrec_add_idx
[function]
[call site]
04616
bcf_hrec_destroy
[function]
[call site]
04617
ksprintf
[function]
[call site]
04618
kh_get_hdict
[function]
[call site]
04619
__ac_FNV1a_hash_string
[function]
[call site]
04620
strcmp
[call site]
04621
bcf_hrec_destroy
[function]
[call site]
04622
strcmp
[call site]
04623
bcf_get_version
[function]
[call site]
04624
get_hdr_aux
[function]
[call site]
04625
bcf_hdr_get_version
[function]
[call site]
04626
bcf_hdr_get_hrec
[function]
[call site]
04627
ksprintf
[function]
[call site]
04628
get_hdr_aux
[function]
[call site]
04629
kh_get_hdict
[function]
[call site]
04630
strcmp
[call site]
04631
ksprintf
[function]
[call site]
04632
get_hdr_aux
[function]
[call site]
04633
kh_get_hdict
[function]
[call site]
04634
strcmp
[call site]
04635
bcf_hrec_find_key
[function]
[call site]
04636
strcmp
[call site]
04637
kh_get_vdict
[function]
[call site]
04638
hts_log
[function]
[call site]
04639
strstr
[call site]
04640
strchr
[call site]
04641
strtol
[call site]
04642
__errno_location
[call site]
04643
__errno_location
[call site]
04644
strtol
[call site]
04645
__errno_location
[call site]
04646
hts_log
[function]
[call site]
04647
bcf_hrec_find_key
[function]
[call site]
04648
ksprintf
[function]
[call site]
04649
kh_get_hdict
[function]
[call site]
04650
bcf_hrec_destroy
[function]
[call site]
04651
realloc
[call site]
04652
bcf_hdr_unregister_hrec
[function]
[call site]
04653
bcf_hrec_find_key
[function]
[call site]
04654
kh_get_vdict
[function]
[call site]
04655
kh_put_hdict
[function]
[call site]
04656
kh_resize_hdict
[function]
[call site]
04657
realloc
[call site]
04658
bcf_hdr_append
[function]
[call site]
04659
kh_destroy_vdict
[function]
[call site]
04660
hts_log
[function]
[call site]
04661
hts_getline
[function]
[call site]
04662
hts_log
[function]
[call site]
04663
hopen
[function]
[call site]
04664
hts_log
[function]
[call site]
04665
kgetline
[function]
[call site]
04666
hgets
[function]
[call site]
04667
strchr
[call site]
04668
kputs
[function]
[call site]
04669
kputsn
[function]
[call site]
04670
kputs
[function]
[call site]
04671
atol
[call site]
04672
kputl
[function]
[call site]
04673
kputll
[function]
[call site]
04674
kputsn
[function]
[call site]
04675
hclose
[function]
[call site]
04676
hts_log
[function]
[call site]
04677
kputsn
[function]
[call site]
04678
kputc
[function]
[call site]
04679
hts_log
[function]
[call site]
04680
bcf_hdr_parse
[function]
[call site]
04681
bcf_hdr_parse_line
[function]
[call site]
04682
strcasecmp
[call site]
04683
hts_log
[function]
[call site]
04684
bcf_hdr_add_hrec
[function]
[call site]
04685
bcf_hrec_destroy
[function]
[call site]
04686
bcf_hdr_parse_line
[function]
[call site]
04687
bcf_hdr_add_hrec
[function]
[call site]
04688
bcf_hrec_destroy
[function]
[call site]
04689
bcf_hdr_parse_line
[function]
[call site]
04690
bcf_hdr_add_hrec
[function]
[call site]
04691
bcf_hrec_destroy
[function]
[call site]
04692
__assert_fail
[call site]
04693
__errno_location
[call site]
04694
strerror
[call site]
04695
hts_log
[function]
[call site]
04696
strncmp
[call site]
04697
strchr
[call site]
04698
hts_strprint
[function]
[call site]
04699
hts_log
[function]
[call site]
04700
hts_log
[function]
[call site]
04701
bcf_hdr_parse_sample_line
[function]
[call site]
04702
strlen
[call site]
04703
strncmp
[call site]
04704
hts_log
[function]
[call site]
04705
strlen
[call site]
04706
strncmp
[call site]
04707
bcf_hdr_add_sample_len
[function]
[call site]
04708
isspace_c
[function]
[call site]
04709
hts_log
[function]
[call site]
04710
realloc
[call site]
04711
kh_put_vdict
[function]
[call site]
04712
bcf_hdr_sync
[function]
[call site]
04713
realloc
[call site]
04714
get_hdr_aux
[function]
[call site]
04715
bcf_hdr_check_sanity
[function]
[call site]
04716
bcf_hdr_id2int
[function]
[call site]
04717
kh_get_vdict
[function]
[call site]
04718
hts_log
[function]
[call site]
04719
bcf_hdr_id2int
[function]
[call site]
04720
tbx_index_load3
[function]
[call site]
04721
index_load
[function]
[call site]
04722
calloc
[call site]
04723
hts_idx_load3
[function]
[call site]
04724
idx_find_and_load
[function]
[call site]
04725
strstr
[call site]
04726
strdup
[call site]
04727
__errno_location
[call site]
04728
strerror
[call site]
04729
hts_log
[function]
[call site]
04730
hts_idx_load3
[function]
[call site]
04731
hisremote
[function]
[call site]
04732
stat
[call site]
04733
hts_log
[function]
[call site]
04734
idx_test_and_fetch
[function]
[call site]
04735
hisremote
[function]
[call site]
04736
strncmp
[call site]
04737
strcspn
[call site]
04738
kputsn
[function]
[call site]
04739
access
[call site]
04740
hopen
[function]
[call site]
04741
hts_log
[function]
[call site]
04742
hts_detect_format2
[function]
[call site]
04743
hts_log
[function]
[call site]
04744
hts_log
[function]
[call site]
04745
hts_open_tmpfile
[function]
[call site]
04746
hts_log
[function]
[call site]
04747
hts_log
[function]
[call site]
04748
calloc
[call site]
04749
__errno_location
[call site]
04750
strerror
[call site]
04751
hts_log
[function]
[call site]
04752
hread
[function]
[call site]
04753
hwrite
[function]
[call site]
04754
__errno_location
[call site]
04755
strerror
[call site]
04756
hts_log
[function]
[call site]
04757
hts_log
[function]
[call site]
04758
hclose
[function]
[call site]
04759
__errno_location
[call site]
04760
strerror
[call site]
04761
hts_log
[function]
[call site]
04762
rename
[call site]
04763
__errno_location
[call site]
04764
strerror
[call site]
04765
hts_log
[function]
[call site]
04766
ks_clear
[function]
[call site]
04767
hclose
[function]
[call site]
04768
hts_log
[function]
[call site]
04769
hopen
[function]
[call site]
04770
hclose_abruptly
[function]
[call site]
04771
strlen
[call site]
04772
__errno_location
[call site]
04773
hclose_abruptly
[function]
[call site]
04774
hclose_abruptly
[function]
[call site]
04775
unlink
[call site]
04776
__errno_location
[call site]
04777
strdup
[call site]
04778
idx_read
[function]
[call site]
04779
bgzf_open
[function]
[call site]
04780
ed_is_big
[function]
[call site]
04781
bgzf_read
[function]
[call site]
04782
memcmp
[call site]
04783
bgzf_read
[function]
[call site]
04784
ed_swap_4p
[function]
[call site]
04785
bgzf_read
[function]
[call site]
04786
bgzf_read
[function]
[call site]
04787
ed_swap_4p
[function]
[call site]
04788
hts_idx_init
[function]
[call site]
04789
idx_read_core
[function]
[call site]
04793
ed_is_big
[function]
[call site]
04794
kh_init_bin
[function]
[call site]
04795
bgzf_read
[function]
[call site]
04796
ed_swap_4p
[function]
[call site]
04797
bgzf_read
[function]
[call site]
04798
ed_swap_4p
[function]
[call site]
04799
kh_put_bin
[function]
[call site]
04800
bgzf_read
[function]
[call site]
04801
ed_swap_8p
[function]
[call site]
04802
bgzf_read
[function]
[call site]
04803
ed_swap_4p
[function]
[call site]
04804
bgzf_read
[function]
[call site]
04805
swap_bins
[function]
[call site]
04806
ed_swap_8p
[function]
[call site]
04807
ed_swap_8p
[function]
[call site]
04808
bgzf_read
[function]
[call site]
04809
ed_swap_4p
[function]
[call site]
04810
bgzf_read
[function]
[call site]
04811
ed_swap_8p
[function]
[call site]
04812
update_loff
[function]
[call site]
04813
hts_bin_bot
[function]
[call site]
04814
hts_bin_level
[function]
[call site]
04815
bgzf_read
[function]
[call site]
04816
ed_swap_8p
[function]
[call site]
04817
memcmp
[call site]
04818
bgzf_read
[function]
[call site]
04819
le_to_u32
[function]
[call site]
04820
hts_idx_init
[function]
[call site]
04821
le_to_u32
[function]
[call site]
04822
bgzf_read
[function]
[call site]
04823
idx_read_core
[function]
[call site]
04824
memcmp
[call site]
04825
bgzf_read
[function]
[call site]
04826
ed_swap_4p
[function]
[call site]
04827
hts_idx_init
[function]
[call site]
04828
idx_read_core
[function]
[call site]
04829
bgzf_close
[function]
[call site]
04830
bgzf_close
[function]
[call site]
04831
hts_idx_destroy
[function]
[call site]
04832
__errno_location
[call site]
04833
strerror
[call site]
04834
hts_log
[function]
[call site]
04835
hts_idx_check_local
[function]
[call site]
04836
hisremote
[function]
[call site]
04837
strlen
[call site]
04838
strncmp
[call site]
04839
strncmp
[call site]
04840
hts_log
[function]
[call site]
04841
strlen
[call site]
04842
calloc
[call site]
04843
strcpy
[call site]
04844
stat
[call site]
04845
strcpy
[call site]
04846
stat
[call site]
04847
strcpy
[call site]
04848
stat
[call site]
04849
strcpy
[call site]
04850
stat
[call site]
04851
strcpy
[call site]
04852
stat
[call site]
04853
strcpy
[call site]
04854
stat
[call site]
04855
strcpy
[call site]
04856
stat
[call site]
04857
strcpy
[call site]
04858
stat
[call site]
04859
strcpy
[call site]
04860
strcmp
[call site]
04861
strcmp
[call site]
04862
strcpy
[call site]
04863
stat
[call site]
04864
strcpy
[call site]
04865
stat
[call site]
04866
hisremote
[function]
[call site]
04867
idx_filename
[function]
[call site]
04868
haddextension
[function]
[call site]
04869
find_scheme_handler
[function]
[call site]
04870
strncmp
[call site]
04871
strcspn
[call site]
04872
strchr
[call site]
04873
strip_extension
[function]
[call site]
04874
kputsn
[function]
[call site]
04875
kputs
[function]
[call site]
04876
kputs
[function]
[call site]
04877
idx_test_and_fetch
[function]
[call site]
04878
haddextension
[function]
[call site]
04879
idx_test_and_fetch
[function]
[call site]
04880
idx_filename
[function]
[call site]
04881
idx_filename
[function]
[call site]
04882
idx_filename
[function]
[call site]
04883
idx_filename
[function]
[call site]
04884
idx_filename
[function]
[call site]
04885
hts_log
[function]
[call site]
04886
hts_idx_load3
[function]
[call site]
04887
idx_read
[function]
[call site]
04888
hts_idx_get_meta
[function]
[call site]
04889
le_to_i32
[function]
[call site]
04890
le_to_i32
[function]
[call site]
04891
le_to_i32
[function]
[call site]
04892
le_to_i32
[function]
[call site]
04893
le_to_i32
[function]
[call site]
04894
le_to_i32
[function]
[call site]
04895
le_to_u32
[function]
[call site]
04896
get_tid
[function]
[call site]
04897
kh_init_s2i
[function]
[call site]
04898
kh_put_s2i
[function]
[call site]
04899
strdup
[call site]
04900
kh_del_s2i
[function]
[call site]
04901
kh_get_s2i
[function]
[call site]
04902
__errno_location
[call site]
04903
strerror
[call site]
04904
hts_log
[function]
[call site]
04905
strlen
[call site]
04906
hts_log
[function]
[call site]
04907
tbx_destroy
[function]
[call site]
04908
hts_idx_destroy
[function]
[call site]
04909
kh_destroy_s2i
[function]
[call site]
04910
tbx_seqnames
[function]
[call site]
04911
calloc
[call site]
04912
calloc
[call site]
04913
__assert_fail
[call site]
04914
__assert_fail
[call site]
04915
bcf_hdr_get_hrec
[function]
[call site]
04916
add_missing_contig_hrec
[function]
[call site]
04917
calloc
[call site]
04918
strdup
[call site]
04919
bcf_hrec_add_key
[function]
[call site]
04920
strlen
[call site]
04921
bcf_hrec_set_val
[function]
[call site]
04922
bcf_hdr_add_hrec
[function]
[call site]
04923
__errno_location
[call site]
04924
__errno_location
[call site]
04925
strerror
[call site]
04926
hts_log
[function]
[call site]
04927
bcf_hrec_destroy
[function]
[call site]
04928
__errno_location
[call site]
04929
bcf_hdr_sync
[function]
[call site]
04930
tbx_destroy
[function]
[call site]
04931
tbx_destroy
[function]
[call site]
04932
bcf_hdr_destroy
[function]
[call site]
04933
get_hdr_aux
[function]
[call site]
04934
kh_destroy_hdict
[function]
[call site]
04935
kh_destroy_vdict
[function]
[call site]
04936
bcf_hrec_destroy
[function]
[call site]
04937
hts_log
[function]
[call site]
04938
__assert_fail
[call site]
04939
bcf_hdr_init
[function]
[call site]
04940
hts_log
[function]
[call site]
04941
bgzf_read
[function]
[call site]
04942
hts_log
[function]
[call site]
04943
bcf_hdr_destroy
[function]
[call site]
04944
strncmp
[call site]
04945
strncmp
[call site]
04946
hts_log
[function]
[call site]
04947
hts_log
[function]
[call site]
04948
bcf_hdr_destroy
[function]
[call site]
04949
bgzf_read
[function]
[call site]
04950
__errno_location
[call site]
04951
__errno_location
[call site]
04952
bgzf_read
[function]
[call site]
04953
bcf_hdr_parse
[function]
[call site]
04954
hts_log
[function]
[call site]
04955
bcf_hdr_destroy
[function]
[call site]
04956
hts_close_or_abort
[function]
[call site]
04957
hts_close
[function]
[call site]
04958
bcf_hdr_write
[function]
[call site]
04959
__errno_location
[call site]
04960
bcf_hdr_sync
[function]
[call site]
04961
vcf_hdr_write
[function]
[call site]
04962
bcf_hdr_format
[function]
[call site]
04963
_bcf_hrec_format
[function]
[call site]
04964
ksprintf
[function]
[call site]
04965
strcmp
[call site]
04966
kputc
[function]
[call site]
04967
ksprintf
[function]
[call site]
04968
ksprintf
[function]
[call site]
04969
ksprintf
[function]
[call site]
04970
ksprintf
[function]
[call site]
04971
ksprintf
[function]
[call site]
04972
ksprintf
[function]
[call site]
04973
ksprintf
[function]
[call site]
04974
bgzf_write
[function]
[call site]
04975
bgzf_flush
[function]
[call site]
04976
hwrite
[function]
[call site]
04977
bcf_hdr_format
[function]
[call site]
04978
kputc
[function]
[call site]
04979
bgzf_write
[function]
[call site]
04980
u32_to_le
[function]
[call site]
04981
bgzf_write
[function]
[call site]
04982
bgzf_write
[function]
[call site]
04983
bgzf_flush
[function]
[call site]
04984
bcf_init
[function]
[call site]
04985
calloc
[call site]
04986
bcf_read
[function]
[call site]
04987
vcf_read
[function]
[call site]
04988
hts_getline
[function]
[call site]
04989
vcf_parse
[function]
[call site]
04990
ks_resize
[function]
[call site]
04991
bcf_clear
[function]
[call site]
04992
bcf_float_set
[function]
[call site]
04993
kstrtok
[function]
[call site]
04994
kh_get_vdict
[function]
[call site]
04995
hts_log
[function]
[call site]
04996
fix_chromosome
[function]
[call site]
04997
ksprintf
[function]
[call site]
04998
bcf_hdr_parse_line
[function]
[call site]
04999
bcf_hdr_add_hrec
[function]
[call site]
05000
bcf_hrec_destroy
[function]
[call site]
05001
bcf_hdr_sync
[function]
[call site]
05002
kh_get_vdict
[function]
[call site]
05003
hts_log
[function]
[call site]
05004
kstrtok
[function]
[call site]
05005
hts_str2uint
[function]
[call site]
05006
hts_log
[function]
[call site]
05007
hts_log
[function]
[call site]
05008
kstrtok
[function]
[call site]
05009
memcmp
[call site]
05010
bcf_enc_vchar
[function]
[call site]
05011
bcf_enc_size
[function]
[call site]
05012
ks_resize
[function]
[call site]
05013
ks_resize
[function]
[call site]
05014
i16_to_le
[function]
[call site]
05015
i32_to_le
[function]
[call site]
05016
kputsn
[function]
[call site]
05017
bcf_enc_size
[function]
[call site]
05018
kstrtok
[function]
[call site]
05019
bcf_enc_vchar
[function]
[call site]
05020
kstrtok
[function]
[call site]
05021
memcmp
[call site]
05022
bcf_seqname_safe
[function]
[call site]
05023
bcf_seqname
[function]
[call site]
05024
bcf_hdr_id2name
[function]
[call site]
05025
hts_log
[function]
[call site]
05026
bcf_enc_vchar
[function]
[call site]
05027
kstrtok
[function]
[call site]
05028
memcmp
[call site]
05029
atof
[call site]
05030
bcf_float_set
[function]
[call site]
05031
kstrtok
[function]
[call site]
05032
memcmp
[call site]
05033
vcf_parse_filter
[function]
[call site]
05034
bcf_seqname_safe
[function]
[call site]
05035
hts_log
[function]
[call site]
05036
kstrtok
[function]
[call site]
05037
kh_get_vdict
[function]
[call site]
05038
hts_log
[function]
[call site]
05039
ksprintf
[function]
[call site]
05040
bcf_hdr_parse_line
[function]
[call site]
05041
bcf_hdr_add_hrec
[function]
[call site]
05042
bcf_hrec_destroy
[function]
[call site]
05043
bcf_hdr_sync
[function]
[call site]
05044
kh_get_vdict
[function]
[call site]
05045
bcf_seqname_safe
[function]
[call site]
05046
hts_log
[function]
[call site]
05047
bcf_enc_vint
[function]
[call site]
05048
bcf_enc_size
[function]
[call site]
05049
bcf_enc_int1
[function]
[call site]
05050
ks_resize
[function]
[call site]
05051
i16_to_le
[function]
[call site]
05052
i32_to_le
[function]
[call site]
05053
bcf_enc_size
[function]
[call site]
05054
ks_resize
[function]
[call site]
05055
bcf_enc_size
[function]
[call site]
05056
ks_resize
[function]
[call site]
05057
i16_to_le
[function]
[call site]
05058
bcf_enc_size
[function]
[call site]
05059
ks_resize
[function]
[call site]
05060
i32_to_le
[function]
[call site]
05061
bcf_enc_vint
[function]
[call site]
05062
kstrtok
[function]
[call site]
05063
memcmp
[call site]
05064
vcf_parse_info
[function]
[call site]
05065
bcf_seqname_safe
[function]
[call site]
05066
hts_log
[function]
[call site]
05067
kh_get_vdict
[function]
[call site]
05068
hts_log
[function]
[call site]
05069
ksprintf
[function]
[call site]
05070
bcf_hdr_parse_line
[function]
[call site]
05071
bcf_hdr_add_hrec
[function]
[call site]
05072
bcf_hrec_destroy
[function]
[call site]
05073
bcf_hdr_sync
[function]
[call site]
05074
kh_get_vdict
[function]
[call site]
05075
bcf_seqname_safe
[function]
[call site]
05076
hts_log
[function]
[call site]
05077
bcf_enc_int1
[function]
[call site]
05078
bcf_enc_size
[function]
[call site]
05079
bcf_enc_vchar
[function]
[call site]
05080
realloc
[call site]
05081
bcf_seqname_safe
[function]
[call site]
05082
hts_log
[function]
[call site]
05083
hts_str2int
[function]
[call site]
05084
bcf_seqname_safe
[function]
[call site]
05085
bcf_enc_int1
[function]
[call site]
05086
bcf_enc_vint
[function]
[call site]
05087
memcmp
[call site]
05088
bcf_seqname_safe
[function]
[call site]
05089
hts_log
[function]
[call site]
05090
hts_str2dbl
[function]
[call site]
05091
bcf_float_set
[function]
[call site]
05092
bcf_enc_vfloat
[function]
[call site]
05093
__assert_fail
[call site]
05094
bcf_enc_size
[function]
[call site]
05095
serialize_float_array
[function]
[call site]
05096
ks_resize
[function]
[call site]
05097
float_to_le
[function]
[call site]
05098
kstrtok
[function]
[call site]
05099
vcf_parse_format
[function]
[call site]
05100
vcf_parse_format_empty1
[function]
[call site]
05101
bcf_seqname_safe
[function]
[call site]
05102
hts_log
[function]
[call site]
05103
vcf_parse_format_dict2
[function]
[call site]
05104
kstrtok
[function]
[call site]
05105
bcf_seqname_safe
[function]
[call site]
05106
hts_log
[function]
[call site]
05107
kh_get_vdict
[function]
[call site]
05108
bcf_seqname_safe
[function]
[call site]
05109
hts_log
[function]
[call site]
05110
bcf_seqname_safe
[function]
[call site]
05111
hts_log
[function]
[call site]
05112
ksprintf
[function]
[call site]
05113
bcf_hdr_parse_line
[function]
[call site]
05114
bcf_hdr_add_hrec
[function]
[call site]
05115
bcf_hrec_destroy
[function]
[call site]
05116
bcf_hdr_sync
[function]
[call site]
05117
kh_get_vdict
[function]
[call site]
05118
bcf_seqname_safe
[function]
[call site]
05119
hts_log
[function]
[call site]
05120
vcf_parse_format_max3
[function]
[call site]
05121
hts_log
[function]
[call site]
05122
vcf_parse_format_alloc4
[function]
[call site]
05123
bcf_seqname_safe
[function]
[call site]
05124
align_mem
[function]
[call site]
05125
kputsn
[function]
[call site]
05126
bcf_seqname_safe
[function]
[call site]
05127
hts_log
[function]
[call site]
05128
bcf_seqname_safe
[function]
[call site]
05129
hts_log
[function]
[call site]
05130
ks_resize
[function]
[call site]
05131
bcf_seqname_safe
[function]
[call site]
05132
hts_log
[function]
[call site]
05133
bcf_seqname_safe
[function]
[call site]
05134
hts_log
[function]
[call site]
05135
vcf_parse_format_fill5
[function]
[call site]
05136
bcf_get_version
[function]
[call site]
05137
bcf_seqname_safe
[function]
[call site]
05138
hts_log
[function]
[call site]
05139
hts_str2uint
[function]
[call site]
05140
bcf_seqname_safe
[function]
[call site]
05141
hts_log
[function]
[call site]
05142
bcf_seqname_safe
[function]
[call site]
05143
hts_log
[function]
[call site]
05144
hts_str2int
[function]
[call site]
05145
bcf_seqname_safe
[function]
[call site]
05146
hts_log
[function]
[call site]
05147
isdigit_c
[function]
[call site]
05148
bcf_float_set
[function]
[call site]
05149
hts_str2dbl
[function]
[call site]
05150
bcf_seqname
[function]
[call site]
05151
hts_log
[function]
[call site]
05152
bcf_float_set
[function]
[call site]
05153
bcf_float_set
[function]
[call site]
05154
bcf_seqname_safe
[function]
[call site]
05155
hts_log
[function]
[call site]
05156
hts_strprint
[function]
[call site]
05157
bcf_seqname_safe
[function]
[call site]
05158
hts_log
[function]
[call site]
05159
bcf_float_set
[function]
[call site]
05160
bcf_float_set
[function]
[call site]
05161
vcf_parse_format_gt6
[function]
[call site]
05162
bcf_enc_int1
[function]
[call site]
05163
bcf_enc_size
[function]
[call site]
05164
kputsn
[function]
[call site]
05165
bcf_enc_vint
[function]
[call site]
05166
bcf_enc_size
[function]
[call site]
05167
serialize_float_array
[function]
[call site]
05168
bcf_seqname_safe
[function]
[call site]
05169
hts_log
[function]
[call site]
05170
vcf_parse_format_check7
[function]
[call site]
05171
bcf_seqname_safe
[function]
[call site]
05172
hts_log
[function]
[call site]
05173
bcf_seqname_safe
[function]
[call site]
05174
get_rlen
[function]
[call site]
05175
bcf_hdr_id2int
[function]
[call site]
05176
svlen_on_ref_for_vcf_alt
[function]
[call site]
05177
strlen
[call site]
05178
memcmp
[call site]
05179
memcmp
[call site]
05180
memcmp
[call site]
05181
memcmp
[call site]
05182
strcmp
[call site]
05183
strcmp
[call site]
05184
strlen
[call site]
05185
bcf_dec_size
[function]
[call site]
05186
bcf_dec_typed_int1
[function]
[call site]
05187
bcf_dec_int1
[function]
[call site]
05188
le_to_i8
[function]
[call site]
05189
le_to_i16
[function]
[call site]
05190
le_to_i32
[function]
[call site]
05191
le_to_i64
[function]
[call site]
05192
le_to_u64
[function]
[call site]
05193
bcf_dec_size
[function]
[call site]
05194
svlen_on_ref_for_vcf_alt
[function]
[call site]
05195
strncmp
[call site]
05196
strncmp
[call site]
05197
bcf_dec_size
[function]
[call site]
05198
bcf_hdr_id2int
[function]
[call site]
05199
bcf_get_info
[function]
[call site]
05200
bcf_hdr_id2int
[function]
[call site]
05201
bcf_get_info_id
[function]
[call site]
05202
bcf_unpack
[function]
[call site]
05203
bcf_fmt_sized_array
[function]
[call site]
05204
bcf_dec_size
[function]
[call site]
05205
bcf_fmt_array
[function]
[call site]
05206
kputc_
[function]
[call site]
05207
memchr
[call site]
05208
kputsn
[function]
[call site]
05209
kputc
[function]
[call site]
05210
le_to_i8
[function]
[call site]
05211
kputc_
[function]
[call site]
05212
kputc
[function]
[call site]
05213
kputw
[function]
[call site]
05214
le_to_i16
[function]
[call site]
05215
kputc_
[function]
[call site]
05216
kputc
[function]
[call site]
05217
kputw
[function]
[call site]
05218
le_to_i32
[function]
[call site]
05219
kputc_
[function]
[call site]
05220
kputc
[function]
[call site]
05221
kputw
[function]
[call site]
05222
le_to_u32
[function]
[call site]
05223
kputc_
[function]
[call site]
05224
kputc
[function]
[call site]
05225
le_to_float
[function]
[call site]
05226
kputd
[function]
[call site]
05227
hts_log
[function]
[call site]
05228
exit
[call site]
05229
kputc_
[function]
[call site]
05230
hts_realloc_or_die
[function]
[call site]
05231
bcf_fmt_sized_array
[function]
[call site]
05232
kputc_
[function]
[call site]
05233
bcf_dec_size
[function]
[call site]
05234
hts_realloc_or_die
[function]
[call site]
05235
bcf_dec_int1
[function]
[call site]
05236
hts_realloc_or_die
[function]
[call site]
05237
bcf_unpack_info_core1
[function]
[call site]
05238
bcf_dec_typed_int1
[function]
[call site]
05239
bcf_dec_size
[function]
[call site]
05240
le_to_i16
[function]
[call site]
05241
le_to_i32
[function]
[call site]
05242
le_to_float
[function]
[call site]
05243
le_to_i64
[function]
[call site]
05244
hts_realloc_or_die
[function]
[call site]
05245
bcf_unpack_fmt_core1
[function]
[call site]
05246
bcf_dec_typed_int1
[function]
[call site]
05247
bcf_dec_size
[function]
[call site]
05248
bcf_get_info
[function]
[call site]
05249
bcf_dec_typed_int1
[function]
[call site]
05250
bcf_unpack_info_core1
[function]
[call site]
05251
bcf_unpack_info_core1
[function]
[call site]
05252
bcf_dec_size
[function]
[call site]
05253
bcf_hdr_id2int
[function]
[call site]
05254
bcf_get_fmt
[function]
[call site]
05255
bcf_hdr_id2int
[function]
[call site]
05256
bcf_get_fmt_id
[function]
[call site]
05257
bcf_unpack
[function]
[call site]
05258
bcf_dec_typed_int1
[function]
[call site]
05259
bcf_unpack_fmt_core1
[function]
[call site]
05260
bcf_dec_size
[function]
[call site]
05261
le_to_i8
[function]
[call site]
05262
le_to_i16
[function]
[call site]
05263
le_to_i32
[function]
[call site]
05264
le_to_i64
[function]
[call site]
05265
le_to_i8
[function]
[call site]
05266
le_to_i16
[function]
[call site]
05267
le_to_i32
[function]
[call site]
05268
le_to_i64
[function]
[call site]
05269
bcf_read1_core
[function]
[call site]
05270
bgzf_read
[function]
[call site]
05271
bcf_clear
[function]
[call site]
05272
le_to_u32
[function]
[call site]
05273
le_to_u32
[function]
[call site]
05274
ks_resize
[function]
[call site]
05275
ks_resize
[function]
[call site]
05276
le_to_i32
[function]
[call site]
05277
le_to_u32
[function]
[call site]
05278
le_to_i32
[function]
[call site]
05279
le_to_float
[function]
[call site]
05280
le_to_u16
[function]
[call site]
05281
le_to_u16
[function]
[call site]
05282
le_to_u32
[function]
[call site]
05283
bgzf_read
[function]
[call site]
05284
bgzf_read
[function]
[call site]
05285
bcf_record_check
[function]
[call site]
05286
hts_log
[function]
[call site]
05287
bcf_dec_size_safe
[function]
[call site]
05288
bcf_dec_typed_int1_safe
[function]
[call site]
05289
le_to_i16
[function]
[call site]
05290
le_to_i32
[function]
[call site]
05291
bcf_seqname_safe
[function]
[call site]
05292
get_type_name
[function]
[call site]
05293
hts_log
[function]
[call site]
05294
bcf_seqname_safe
[function]
[call site]
05295
hts_log
[function]
[call site]
05296
bcf_dec_size_safe
[function]
[call site]
05297
bcf_seqname_safe
[function]
[call site]
05298
get_type_name
[function]
[call site]
05299
hts_log
[function]
[call site]
05300
bcf_dec_size_safe
[function]
[call site]
05301
bcf_seqname_safe
[function]
[call site]
05302
get_type_name
[function]
[call site]
05303
hts_log
[function]
[call site]
05304
bcf_dec_int1
[function]
[call site]
05305
bcf_seqname_safe
[function]
[call site]
05306
hts_log
[function]
[call site]
05307
bcf_dec_typed_int1_safe
[function]
[call site]
05308
bcf_seqname_safe
[function]
[call site]
05309
hts_log
[function]
[call site]
05310
bcf_dec_size_safe
[function]
[call site]
05311
bcf_seqname_safe
[function]
[call site]
05312
get_type_name
[function]
[call site]
05313
hts_log
[function]
[call site]
05314
bcf_dec_typed_int1_safe
[function]
[call site]
05315
bcf_record_check_err
[function]
[call site]
05316
bcf_seqname_safe
[function]
[call site]
05317
bcf_dec_size_safe
[function]
[call site]
05318
bcf_record_check_err
[function]
[call site]
05319
bcf_seqname_safe
[function]
[call site]
05320
hts_log
[function]
[call site]
05321
get_rlen
[function]
[call site]
05322
bcf_seqname_safe
[function]
[call site]
05323
hts_log
[function]
[call site]
05324
bcf_seqname_safe
[function]
[call site]
05325
hts_log
[function]
[call site]
05326
bcf_subset_format
[function]
[call site]
05327
hts_realloc_or_die
[function]
[call site]
05328
bcf_unpack_fmt_core1
[function]
[call site]
05329
bcf_write
[function]
[call site]
05330
bcf_hdr_sync
[function]
[call site]
05331
bcf_seqname_safe
[function]
[call site]
05332
hts_log
[function]
[call site]
05333
vcf_write
[function]
[call site]
05334
vcf_format
[function]
[call site]
05335
bcf_seqname
[function]
[call site]
05336
hts_log
[function]
[call site]
05337
__errno_location
[call site]
05338
bcf_unpack
[function]
[call site]
05339
get_hdr_aux
[function]
[call site]
05340
calloc
[call site]
05341
kputs
[function]
[call site]
05342
kputc_
[function]
[call site]
05343
kputll
[function]
[call site]
05344
kputc_
[function]
[call site]
05345
kputs
[function]
[call site]
05346
kputc_
[function]
[call site]
05347
kputs
[function]
[call site]
05348
kputc_
[function]
[call site]
05349
kputc_
[function]
[call site]
05350
kputc_
[function]
[call site]
05351
kputs
[function]
[call site]
05352
kputc_
[function]
[call site]
05353
kputc_
[function]
[call site]
05354
bcf_float_is_missing
[function]
[call site]
05355
kputc_
[function]
[call site]
05356
kputd
[function]
[call site]
05357
kputc_
[function]
[call site]
05358
bcf_seqname_safe
[function]
[call site]
05359
hts_log
[function]
[call site]
05360
__errno_location
[call site]
05361
kputc_
[function]
[call site]
05362
strlen
[call site]
05363
kputsn
[function]
[call site]
05364
kputc_
[function]
[call site]
05365
kputc_
[function]
[call site]
05366
bcf_dec_typed_int1
[function]
[call site]
05367
bcf_dec_size
[function]
[call site]
05368
bcf_seqname_safe
[function]
[call site]
05369
hts_log
[function]
[call site]
05370
__errno_location
[call site]
05371
strlen
[call site]
05372
ks_resize
[function]
[call site]
05373
bcf_fmt_array
[function]
[call site]
05374
bcf_float_is_missing
[function]
[call site]
05375
kputc_
[function]
[call site]
05376
kputd
[function]
[call site]
05377
kputc_
[function]
[call site]
05378
kputc_
[function]
[call site]
05379
kputw
[function]
[call site]
05380
kputc_
[function]
[call site]
05381
kputll
[function]
[call site]
05382
bcf_seqname_safe
[function]
[call site]
05383
hts_log
[function]
[call site]
05384
__errno_location
[call site]
05385
kputc_
[function]
[call site]
05386
kputc_
[function]
[call site]
05387
bcf_dec_typed_int1
[function]
[call site]
05388
bcf_dec_size
[function]
[call site]
05389
kputc_
[function]
[call site]
05390
bcf_seqname_safe
[function]
[call site]
05391
hts_log
[function]
[call site]
05392
__errno_location
[call site]
05393
strlen
[call site]
05394
kputsn
[function]
[call site]
05395
kputsn
[function]
[call site]
05396
kputc_
[function]
[call site]
05397
kputc_
[function]
[call site]
05398
bcf_format_gt_v2
[function]
[call site]
05399
le_to_i8
[function]
[call site]
05400
kputc
[function]
[call site]
05401
kputw
[function]
[call site]
05402
le_to_i16
[function]
[call site]
05403
kputc
[function]
[call site]
05404
kputw
[function]
[call site]
05405
le_to_i32
[function]
[call site]
05406
kputc
[function]
[call site]
05407
kputw
[function]
[call site]
05408
kputc
[function]
[call site]
05409
hts_log
[function]
[call site]
05410
get_hdr_aux
[function]
[call site]
05411
kinsert_char
[function]
[call site]
05412
ks_resize
[function]
[call site]
05413
kinsert_char
[function]
[call site]
05414
kinsert_char
[function]
[call site]
05415
hts_log
[function]
[call site]
05416
__errno_location
[call site]
05417
bcf_fmt_array1
[function]
[call site]
05418
kputc_
[function]
[call site]
05419
kputc_
[function]
[call site]
05420
kputw
[function]
[call site]
05421
le_to_i16
[function]
[call site]
05422
kputc_
[function]
[call site]
05423
kputw
[function]
[call site]
05424
le_to_i32
[function]
[call site]
05425
kputc_
[function]
[call site]
05426
kputw
[function]
[call site]
05427
le_to_u32
[function]
[call site]
05428
kputc_
[function]
[call site]
05429
le_to_float
[function]
[call site]
05430
kputd
[function]
[call site]
05431
bcf_fmt_array
[function]
[call site]
05432
kputc_
[function]
[call site]
05433
bcf_fmt_array1
[function]
[call site]
05434
bcf_fmt_array
[function]
[call site]
05435
kputc_
[function]
[call site]
05436
kputsn
[function]
[call site]
05437
kputc
[function]
[call site]
05438
bgzf_flush_try
[function]
[call site]
05439
hts_idx_amend_last
[function]
[call site]
05440
bgzf_write
[function]
[call site]
05441
hwrite
[function]
[call site]
05442
bcf_seqname_safe
[function]
[call site]
05443
hts_idx_tbi_name
[function]
[call site]
05444
strlen
[call site]
05445
realloc
[call site]
05446
strcpy
[call site]
05447
le_to_u32
[function]
[call site]
05448
u32_to_le
[function]
[call site]
05449
bgzf_idx_push
[function]
[call site]
05450
bcf_strerror
[function]
[call site]
05451
add_desc_to_buffer
[function]
[call site]
05452
add_desc_to_buffer
[function]
[call site]
05456
bcf_seqname_safe
[function]
[call site]
05457
hts_log
[function]
[call site]
05458
bcf1_sync
[function]
[call site]
05459
bcf1_sync_id
[function]
[call site]
05460
strcmp
[call site]
05461
strlen
[call site]
05462
bcf_enc_vchar
[function]
[call site]
05463
bcf_enc_size
[function]
[call site]
05464
bcf1_sync_alleles
[function]
[call site]
05465
bcf1_sync_filter
[function]
[call site]
05469
bcf_enc_vint
[function]
[call site]
05470
bcf_enc_vint
[function]
[call site]
05471
bcf1_sync_info
[function]
[call site]
05472
kputsn_
[function]
[call site]
05473
bcf_unpack
[function]
[call site]
05474
bcf1_sync_id
[function]
[call site]
05475
kputsn_
[function]
[call site]
05476
bcf1_sync_alleles
[function]
[call site]
05477
kputsn_
[function]
[call site]
05478
strlen
[call site]
05479
bcf1_sync_filter
[function]
[call site]
05480
kputsn_
[function]
[call site]
05481
bcf_enc_vint
[function]
[call site]
05482
bcf1_sync_info
[function]
[call site]
05483
kputsn_
[function]
[call site]
05484
kputsn_
[function]
[call site]
05485
bcf_seqname_safe
[function]
[call site]
05486
hts_log
[function]
[call site]
05487
u32_to_le
[function]
[call site]
05488
u32_to_le
[function]
[call site]
05489
i32_to_le
[function]
[call site]
05490
u32_to_le
[function]
[call site]
05491
u32_to_le
[function]
[call site]
05492
float_to_le
[function]
[call site]
05493
u16_to_le
[function]
[call site]
05494
u16_to_le
[function]
[call site]
05495
u32_to_le
[function]
[call site]
05496
bgzf_write
[function]
[call site]
05497
bgzf_write
[function]
[call site]
05498
bgzf_write
[function]
[call site]
05499
bgzf_idx_push
[function]
[call site]
05500
bcf_destroy
[function]
[call site]
05501
bcf_empty
[function]
[call site]
05502
bcf_clear
[function]
[call site]
05503
bcf_hdr_destroy
[function]
[call site]
05504
hts_close_or_abort
[function]
[call site]
05505
hts_close
[function]
[call site]
05506
view_vcf
[function]
[call site]
05507