The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 233 | 4060 | hts_str2dbl | call site: 04060 | bam_sym_lookup |
| 142 | 1554 | hts_hopen | call site: 01554 | hts_process_opts |
| 110 | 4768 | idx_find_and_load | call site: 04768 | hts_idx_load3 |
| 79 | 2549 | zlib_mem_deflate | call site: 02549 | fqz_compress |
| 77 | 3926 | sam_parse1 | call site: 03926 | sam_dispatcher_read |
| 74 | 3035 | cram_decode_slice | call site: 03035 | cram_get_ref |
| 69 | 1483 | refs2id | call site: 01483 | hts_tpool_init |
| 67 | 2702 | rans_compress_to_4x16 | call site: 02702 | arith_compress_to |
| 64 | 4910 | idx_find_and_load | call site: 04910 | hts_idx_load3 |
| 62 | 1796 | sam_format1_append | call site: 01796 | hts_set_opt |
| 51 | 1053 | hwrite | call site: 01053 | bgzf_close_mt |
| 51 | 4415 | cram_put_bam_seq | call site: 04415 | sam_dispatcher_write |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
realloc
[call site]
00024
__ac_FNV1a_hash_string
[function]
[call site]
00025
strcmp
[call site]
00026
__errno_location
[call site]
00027
strerror
[call site]
00028
hts_log
[function]
[call site]
00029
priority
[function]
[call site]
00030
hfile_add_scheme_handler
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
init_add_plugin
[function]
[call site]
00033
hts_log
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hfile_plugin_init_mem
[function]
[call site]
00037
hfile_add_scheme_handler
[function]
[call site]
00038
init_add_plugin
[function]
[call site]
00039
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00040
hfile_add_scheme_handler
[function]
[call site]
00041
init_add_plugin
[function]
[call site]
00042
hfile_plugin_init_libcurl
[function]
[call site]
00043
hts_version
[function]
[call site]
00044
curl_global_init
[call site]
00045
easy_errno
[function]
[call site]
00046
curl_easy_getinfo
[call site]
00047
curl_easy_getinfo
[call site]
00048
http_status_errno
[function]
[call site]
00049
curl_easy_strerror
[call site]
00050
hts_log
[function]
[call site]
00051
__errno_location
[call site]
00052
curl_share_init
[call site]
00053
curl_global_cleanup
[call site]
00054
__errno_location
[call site]
00055
curl_share_setopt
[call site]
00056
share_lock
[function]
[call site]
00057
pthread_mutex_lock
[call site]
00058
curl_share_setopt
[call site]
00059
share_unlock
[function]
[call site]
00060
pthread_mutex_unlock
[call site]
00061
curl_share_setopt
[call site]
00062
curl_share_cleanup
[call site]
00063
curl_global_cleanup
[call site]
00064
__errno_location
[call site]
00065
getenv
[call site]
00066
strdup
[call site]
00067
kh_init_auth_map
[function]
[call site]
00068
calloc
[call site]
00069
__errno_location
[call site]
00070
kh_destroy_auth_map
[function]
[call site]
00071
curl_share_cleanup
[call site]
00072
curl_global_cleanup
[call site]
00073
__errno_location
[call site]
00074
getenv
[call site]
00075
strcmp
[call site]
00076
curl_version_info
[call site]
00077
ksprintf
[function]
[call site]
00078
kvsprintf
[function]
[call site]
00079
kputd
[function]
[call site]
00080
kputsn
[function]
[call site]
00081
__errno_location
[call site]
00082
ks_resize
[function]
[call site]
00083
realloc
[call site]
00084
kputsn
[function]
[call site]
00085
kputc
[function]
[call site]
00086
ks_resize
[function]
[call site]
00087
ks_resize
[function]
[call site]
00088
snprintf
[call site]
00089
kputsn
[function]
[call site]
00090
vsnprintf
[call site]
00091
ks_resize
[function]
[call site]
00092
vsnprintf
[call site]
00093
hfile_add_scheme_handler
[function]
[call site]
00094
init_add_plugin
[function]
[call site]
00095
hfile_plugin_init_gcs
[function]
[call site]
00096
hfile_add_scheme_handler
[function]
[call site]
00097
hfile_add_scheme_handler
[function]
[call site]
00098
hfile_add_scheme_handler
[function]
[call site]
00099
init_add_plugin
[function]
[call site]
00100
hfile_plugin_init_s3
[function]
[call site]
00101
hfile_add_scheme_handler
[function]
[call site]
00102
hfile_add_scheme_handler
[function]
[call site]
00103
hfile_add_scheme_handler
[function]
[call site]
00104
init_add_plugin
[function]
[call site]
00105
hfile_plugin_init_s3_write
[function]
[call site]
00106
hts_version
[function]
[call site]
00107
curl_global_init
[call site]
00108
curl_share_init
[call site]
00109
curl_global_cleanup
[call site]
00110
__errno_location
[call site]
00111
curl_share_setopt
[call site]
00112
share_lock
[function]
[call site]
00113
pthread_mutex_lock
[call site]
00114
curl_share_setopt
[call site]
00115
share_unlock
[function]
[call site]
00116
pthread_mutex_unlock
[call site]
00117
curl_share_setopt
[call site]
00118
curl_share_cleanup
[call site]
00119
curl_global_cleanup
[call site]
00120
__errno_location
[call site]
00121
curl_version_info
[call site]
00122
ksprintf
[function]
[call site]
00123
hfile_add_scheme_handler
[function]
[call site]
00124
hfile_add_scheme_handler
[function]
[call site]
00125
hfile_add_scheme_handler
[function]
[call site]
00126
atexit
[call site]
00127
hfile_exit
[function]
[call site]
00128
hfile_shutdown
[function]
[call site]
00129
pthread_mutex_lock
[call site]
00130
kh_destroy_scheme_string
[function]
[call site]
00131
pthread_mutex_unlock
[call site]
00132
pthread_mutex_destroy
[call site]
00133
pthread_mutex_unlock
[call site]
00134
pthread_mutex_unlock
[call site]
00135
kh_get_scheme_string
[function]
[call site]
00136
strchr
[call site]
00137
strcmp
[call site]
00138
hopen_fd_stdinout
[function]
[call site]
00139
strchr
[call site]
00140
snprintf
[call site]
00141
hdopen
[function]
[call site]
00142
blksize
[function]
[call site]
00143
fstat
[call site]
00144
hfile_init
[function]
[call site]
00145
strchr
[call site]
00146
posix_memalign
[call site]
00147
strchr
[call site]
00148
hfile_destroy
[function]
[call site]
00149
__errno_location
[call site]
00150
__errno_location
[call site]
00151
strchr
[call site]
00152
strchr
[call site]
00153
hopen_fd
[function]
[call site]
00154
hfile_oflags
[function]
[call site]
00155
open
[call site]
00156
blksize
[function]
[call site]
00157
hfile_init
[function]
[call site]
00158
__errno_location
[call site]
00159
close
[call site]
00160
hfile_destroy
[function]
[call site]
00161
hts_hopen
[function]
[call site]
00162
calloc
[call site]
00163
strdup
[call site]
00164
ed_is_big
[function]
[call site]
00165
strchr
[call site]
00166
strncpy
[call site]
00167
strncpy
[call site]
00168
strchr
[call site]
00169
hts_detect_format2
[function]
[call site]
00170
hpeek
[function]
[call site]
00171
refill_buffer
[function]
[call site]
00172
__errno_location
[call site]
00173
memcmp
[call site]
00174
memcmp
[call site]
00175
decompress_peek_gz
[function]
[call site]
00176
hpeek
[function]
[call site]
00177
inflateInit2_
[call site]
00178
inflate
[call site]
00179
inflateReset
[call site]
00180
inflateEnd
[call site]
00181
memcmp
[call site]
00182
memcmp
[call site]
00183
memcmp
[call site]
00184
memcmp
[call site]
00185
decompress_peek_xz
[function]
[call site]
00186
hpeek
[function]
[call site]
00187
lzma_easy_decoder_memusage
[call site]
00188
lzma_stream_decoder
[call site]
00189
lzma_code
[call site]
00190
lzma_end
[call site]
00191
lzma_end
[call site]
00192
memcmp
[call site]
00193
hpeek
[function]
[call site]
00194
strcmp
[call site]
00195
find_file_extension
[function]
[call site]
00196
strstr
[call site]
00197
strlen
[call site]
00198
tolower_c
[function]
[call site]
00199
memcmp
[call site]
00200
memcmp
[call site]
00201
memcmp
[call site]
00202
memcmp
[call site]
00203
memcmp
[call site]
00204
memcmp
[call site]
00205
memcmp
[call site]
00206
strcmp
[call site]
00207
memcmp
[call site]
00208
parse_version
[function]
[call site]
00209
isdigit_c
[function]
[call site]
00210
__ctype_b_loc
[call site]
00211
isdigit_c
[function]
[call site]
00212
memcmp
[call site]
00213
memcmp
[call site]
00214
memcmp
[call site]
00215
memcmp
[call site]
00216
parse_version
[function]
[call site]
00217
memcmp
[call site]
00218
cmp_nonblank
[function]
[call site]
00219
isspace_c
[function]
[call site]
00220
__ctype_b_loc
[call site]
00221
memcmp
[call site]
00222
is_fastaq
[function]
[call site]
00223
is_fastaq
[function]
[call site]
00227
parse_tabbed_text
[function]
[call site]
00228
isdigit_c
[function]
[call site]
00229
strchr
[call site]
00230
isdigit_c
[function]
[call site]
00231
colmatch
[function]
[call site]
00232
colmatch
[function]
[call site]
00233
strstr
[call site]
00234
colmatch
[function]
[call site]
00235
strstr
[call site]
00236
colmatch
[function]
[call site]
00237
colmatch
[function]
[call site]
00238
is_text_only
[function]
[call site]
00239
__errno_location
[call site]
00240
hopen_htsget_redirect
[function]
[call site]
00241
hfile_init
[function]
[call site]
00242
parse_ga4gh_redirect_json
[function]
[call site]
00243
hts_json_fnext
[function]
[call site]
00244
hgetc
[function]
[call site]
00245
hgetc2
[function]
[call site]
00246
refill_buffer
[function]
[call site]
00247
fscan_string
[function]
[call site]
00248
hgetc
[function]
[call site]
00249
hgetc
[function]
[call site]
00250
kputc
[function]
[call site]
00251
kputc
[function]
[call site]
00252
kputc
[function]
[call site]
00253
kputc
[function]
[call site]
00254
kputc
[function]
[call site]
00255
kputc
[function]
[call site]
00256
hgetc
[function]
[call site]
00257
dehex
[function]
[call site]
00258
hgetc
[function]
[call site]
00259
dehex
[function]
[call site]
00260
hgetc
[function]
[call site]
00261
dehex
[function]
[call site]
00262
hgetc
[function]
[call site]
00263
dehex
[function]
[call site]
00264
encode_utf8
[function]
[call site]
00265
kputsn
[function]
[call site]
00266
kputc
[function]
[call site]
00267
kputsn
[function]
[call site]
00268
kputc
[function]
[call site]
00269
hpeek
[function]
[call site]
00270
strchr
[call site]
00271
hgetc
[function]
[call site]
00272
kputc
[function]
[call site]
00273
token_type
[function]
[call site]
00274
hts_json_fnext
[function]
[call site]
00278
strcmp
[call site]
00279
parse_ga4gh_body_json
[function]
[call site]
00280
hts_json_fnext
[function]
[call site]
00281
hts_json_fnext
[function]
[call site]
00282
strcmp
[call site]
00283
hts_json_fnext
[function]
[call site]
00284
hts_json_fnext
[function]
[call site]
00285
hts_realloc_or_die
[function]
[call site]
00286
__errno_location
[call site]
00287
realloc
[call site]
00288
__errno_location
[call site]
00289
strerror
[call site]
00290
hts_log
[function]
[call site]
00291
exit
[call site]
00292
hts_json_fnext
[function]
[call site]
00293
strcmp
[call site]
00294
hts_json_fnext
[function]
[call site]
00295
ks_release
[function]
[call site]
00296
strcmp
[call site]
00297
hts_json_fnext
[function]
[call site]
00298
hts_json_fnext
[function]
[call site]
00299
hts_json_fnext
[function]
[call site]
00300
kputs
[function]
[call site]
00301
__errno_location
[call site]
00302
strlen
[call site]
00303
kputsn
[function]
[call site]
00304
kputs
[function]
[call site]
00305
hts_realloc_or_die
[function]
[call site]
00306
ks_release
[function]
[call site]
00307
hts_json_fskip_value
[function]
[call site]
00308
skip_value
[function]
[call site]
00309
fnext
[function]
[call site]
00310
hts_json_fnext
[function]
[call site]
00311
strcmp
[call site]
00312
hts_json_fnext
[function]
[call site]
00313
hts_log
[function]
[call site]
00314
hts_json_fskip_value
[function]
[call site]
00315
hts_json_fnext
[function]
[call site]
00316
free_all_parts
[function]
[call site]
00317
free_part
[function]
[call site]
00318
hfile_destroy
[function]
[call site]
00319
__errno_location
[call site]
00320
hclose_abruptly
[function]
[call site]
00321
__errno_location
[call site]
00322
hfile_destroy
[function]
[call site]
00323
__errno_location
[call site]
00324
hts_crypt4gh_redirect
[function]
[call site]
00325
strlen
[call site]
00326
snprintf
[call site]
00327
strchr
[call site]
00328
snprintf
[call site]
00329
hopen
[function]
[call site]
00330
hts_detect_format2
[function]
[call site]
00331
strchr
[call site]
00332
strchr
[call site]
00333
strchr
[call site]
00334
strchr
[call site]
00335
strchr
[call site]
00336
strchr
[call site]
00337
strchr
[call site]
00338
strchr
[call site]
00339
abort
[call site]
00340
format_category
[function]
[call site]
00341
__errno_location
[call site]
00342
bgzf_hopen
[function]
[call site]
00343
strchr
[call site]
00344
bgzf_read_init
[function]
[call site]
00345
hpeek
[function]
[call site]
00346
calloc
[call site]
00347
memcmp
[call site]
00348
memcmp
[call site]
00349
hts_log
[function]
[call site]
00350
razf_info
[function]
[call site]
00351
strcmp
[call site]
00352
hseek
[function]
[call site]
00353
writebuffer_is_nonempty
[function]
[call site]
00354
flush_buffer
[function]
[call site]
00355
__errno_location
[call site]
00356
htell
[function]
[call site]
00357
__errno_location
[call site]
00358
__errno_location
[call site]
00359
__errno_location
[call site]
00360
hread
[function]
[call site]
00361
hread2
[function]
[call site]
00362
__errno_location
[call site]
00363
refill_buffer
[function]
[call site]
00364
ed_is_big
[function]
[call site]
00365
ed_swap_8p
[function]
[call site]
00366
ed_swap_8
[function]
[call site]
00367
hts_log
[function]
[call site]
00368
hts_log
[function]
[call site]
00369
__errno_location
[call site]
00370
kh_init_bgzf_cache
[function]
[call site]
00371
calloc
[call site]
00372
strchr
[call site]
00373
bgzf_write_init
[function]
[call site]
00374
calloc
[call site]
00375
mode2level
[function]
[call site]
00376
strchr
[call site]
00377
strchr
[call site]
00378
calloc
[call site]
00379
deflateInit2_
[call site]
00380
bgzf_zerr
[function]
[call site]
00381
hts_log
[function]
[call site]
00385
__errno_location
[call site]
00386
strerror
[call site]
00387
hts_log
[function]
[call site]
00388
__errno_location
[call site]
00389
ed_is_big
[function]
[call site]
00390
cram_dopen
[function]
[call site]
00391
calloc
[call site]
00392
cram_read_file_def
[function]
[call site]
00393
hread
[function]
[call site]
00394
memcmp
[call site]
00395
hts_log
[function]
[call site]
00396
cram_init_tables
[function]
[call site]
00397
cram_init_varint
[function]
[call site]
00398
cram_read_SAM_hdr
[function]
[call site]
00399
int32_decode
[function]
[call site]
00400
hread
[function]
[call site]
00401
hread
[function]
[call site]
00402
cram_read_container
[function]
[call site]
00403
int32_decode
[function]
[call site]
00404
crc32
[call site]
00405
calloc
[call site]
00406
__errno_location
[call site]
00407
cram_free_container
[function]
[call site]
00408
cram_free_compression_header
[function]
[call site]
00409
kh_destroy_map
[function]
[call site]
00410
cram_free_block
[function]
[call site]
00411
kh_destroy_m_s2i
[function]
[call site]
00412
string_pool_destroy
[function]
[call site]
00413
cram_free_block
[function]
[call site]
00414
cram_free_slice
[function]
[call site]
00415
cram_free_block
[function]
[call site]
00416
cram_free_block
[function]
[call site]
00417
cram_free_block
[function]
[call site]
00418
cram_free_slice_header
[function]
[call site]
00419
cram_free_block
[function]
[call site]
00420
cram_free_block
[function]
[call site]
00421
cram_free_block
[function]
[call site]
00422
cram_free_block
[function]
[call site]
00423
cram_free_block
[function]
[call site]
00424
cram_free_block
[function]
[call site]
00425
string_pool_destroy
[function]
[call site]
00426
kh_destroy_m_s2i
[function]
[call site]
00427
kh_destroy_m_s2i
[function]
[call site]
00428
cram_free_slice
[function]
[call site]
00429
cram_stats_free
[function]
[call site]
00430
kh_destroy_m_i2i
[function]
[call site]
00431
cram_free_block
[function]
[call site]
00432
cram_free_block
[function]
[call site]
00433
kh_destroy_m_tagmap
[function]
[call site]
00434
free_bam_list
[function]
[call site]
00435
bam_destroy1
[function]
[call site]
00436
bam_get_mempolicy
[function]
[call site]
00437
bam_get_mempolicy
[function]
[call site]
00438
bam_get_mempolicy
[function]
[call site]
00439
__errno_location
[call site]
00440
cram_free_container
[function]
[call site]
00441
cram_free_container
[function]
[call site]
00442
int32_decode
[function]
[call site]
00443
cram_free_container
[function]
[call site]
00444
hts_log
[function]
[call site]
00445
cram_free_container
[function]
[call site]
00446
cram_free_container
[function]
[call site]
00447
cram_read_block
[function]
[call site]
00448
hgetc
[function]
[call site]
00449
crc32
[call site]
00450
hgetc
[function]
[call site]
00451
crc32
[call site]
00452
hread
[function]
[call site]
00453
hread
[function]
[call site]
00454
int32_decode
[function]
[call site]
00455
cram_free_container
[function]
[call site]
00456
cram_uncompress_block
[function]
[call site]
00457
crc32
[call site]
00458
hts_log
[function]
[call site]
00459
__assert_fail
[call site]
00460
zlib_mem_inflate
[function]
[call site]
00461
inflateInit2_
[call site]
00462
hts_log
[function]
[call site]
00463
inflate
[call site]
00464
hts_log
[function]
[call site]
00465
inflateEnd
[call site]
00466
realloc
[call site]
00467
inflateEnd
[call site]
00468
inflateEnd
[call site]
00469
BZ2_bzBuffToBuffDecompress
[call site]
00470
lzma_mem_inflate
[function]
[call site]
00471
lzma_easy_decoder_memusage
[call site]
00472
lzma_stream_decoder
[call site]
00473
realloc
[call site]
00474
lzma_code
[call site]
00475
hts_log
[function]
[call site]
00476
lzma_code
[call site]
00477
hts_log
[function]
[call site]
00478
realloc
[call site]
00479
lzma_end
[call site]
00480
lzma_end
[call site]
00481
rans_uncompress
[function]
[call site]
00482
rans_uncompress_O1
[function]
[call site]
00483
htscodecs_tls_calloc
[function]
[call site]
00484
htscodecs_tls_alloc
[function]
[call site]
00485
pthread_once
[call site]
00486
htscodecs_tls_init
[function]
[call site]
00487
pthread_key_create
[call site]
00488
htscodecs_tls_free_all
[function]
[call site]
00489
fprintf
[call site]
00490
strerror
[call site]
00491
fprintf
[call site]
00492
pthread_getspecific
[call site]
00493
calloc
[call site]
00494
pthread_setspecific
[call site]
00495
fprintf
[call site]
00496
calloc
[call site]
00497
RansDecSymbolInit32
[function]
[call site]
00498
__assert_fail
[call site]
00499
__assert_fail
[call site]
00500
RansDecInit
[function]
[call site]
00501
RansDecInit
[function]
[call site]
00502
RansDecInit
[function]
[call site]
00503
RansDecInit
[function]
[call site]
00504
RansDecAdvanceStep
[function]
[call site]
00505
RansDecAdvanceStep
[function]
[call site]
00506
RansDecAdvanceStep
[function]
[call site]
00507
RansDecAdvanceStep
[function]
[call site]
00508
RansDecRenorm2
[function]
[call site]
00509
RansDecRenorm2
[function]
[call site]
00510
RansDecRenormSafe
[function]
[call site]
00511
RansDecRenormSafe
[function]
[call site]
00512
RansDecRenormSafe
[function]
[call site]
00513
RansDecRenormSafe
[function]
[call site]
00514
RansDecGet
[function]
[call site]
00515
RansDecRenormSafe
[function]
[call site]
00516
htscodecs_tls_free
[function]
[call site]
00517
rans_uncompress_O0
[function]
[call site]
00521
RansDecInit
[function]
[call site]
00522
RansDecInit
[function]
[call site]
00523
RansDecInit
[function]
[call site]
00524
RansDecInit
[function]
[call site]
00525
RansDecRenorm2
[function]
[call site]
00526
RansDecRenorm2
[function]
[call site]
00527
RansDecRenormSafe
[function]
[call site]
00528
RansDecRenormSafe
[function]
[call site]
00529
RansDecRenormSafe
[function]
[call site]
00530
RansDecRenormSafe
[function]
[call site]
00531
fqz_decompress
[function]
[call site]
00532
uncompress_block_fqz2f
[function]
[call site]
00533
var_get_u32
[function]
[call site]
00534
fqz_read_parameters
[function]
[call site]
00535
read_array
[function]
[call site]
00536
fqz_read_parameters1
[function]
[call site]
00537
read_array
[function]
[call site]
00538
read_array
[function]
[call site]
00539
read_array
[function]
[call site]
00540
fqz_free_parameters
[function]
[call site]
00541
fqz_create_models
[function]
[call site]
00542
htscodecs_tls_alloc
[function]
[call site]
00543
SIMPLE_MODEL256_init
[function]
[call site]
00544
SIMPLE_MODEL256_init
[function]
[call site]
00545
SIMPLE_MODEL2_init
[function]
[call site]
00546
SIMPLE_MODEL2_init
[function]
[call site]
00547
SIMPLE_MODEL256_init
[function]
[call site]
00548
RC_SetInput
[function]
[call site]
00549
RC_StartDecode
[function]
[call site]
00550
realloc
[call site]
00551
realloc
[call site]
00552
decompress_new_read
[function]
[call site]
00553
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00554
RC_GetFreq
[function]
[call site]
00555
RC_Decode
[function]
[call site]
00556
SIMPLE_MODEL256_normalize
[function]
[call site]
00557
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00558
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00559
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00560
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00561
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00562
SIMPLE_MODEL2_normalize
[function]
[call site]
00563
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00564
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00565
fqz_update_ctx
[function]
[call site]
00566
realloc
[call site]
00567
realloc
[call site]
00568
RC_FinishDecode
[function]
[call site]
00569
fqz_destroy_models
[function]
[call site]
00570
htscodecs_tls_free
[function]
[call site]
00571
fqz_free_parameters
[function]
[call site]
00572
fqz_destroy_models
[function]
[call site]
00573
fqz_free_parameters
[function]
[call site]
00574
rans_uncompress_4x16
[function]
[call site]
00575
rans_uncompress_to_4x16
[function]
[call site]
00576
var_get_u32
[function]
[call site]
00577
var_get_u32
[function]
[call site]
00578
rans_uncompress_to_4x16
[function]
[call site]
00579
unstripe
[function]
[call site]
00580
var_get_u32
[function]
[call site]
00581
hts_unpack_meta
[function]
[call site]
00582
var_get_u32
[function]
[call site]
00583
var_get_u32
[function]
[call site]
00584
var_get_u32
[function]
[call site]
00585
var_get_u32
[function]
[call site]
00586
rans_dec_func
[function]
[call site]
00587
pthread_once
[call site]
00588
htscodecs_tls_cpu_init
[function]
[call site]
00589
__get_cpuid_max
[function]
[call site]
00590
not_ancient_darwin
[function]
[call site]
00591
strerror
[call site]
00592
fprintf
[call site]
00593
fprintf
[call site]
00594
rans_dec_func
[function]
[call site]
00595
hts_rle_decode
[function]
[call site]
00596
var_get_u32
[function]
[call site]
00597
hts_unpack
[function]
[call site]
00598
arith_uncompress_to
[function]
[call site]
00599
var_get_u32
[function]
[call site]
00600
var_get_u32
[function]
[call site]
00601
arith_uncompress_to
[function]
[call site]
00602
unstripe
[function]
[call site]
00603
var_get_u32
[function]
[call site]
00604
hts_unpack_meta
[function]
[call site]
00605
var_get_u32
[function]
[call site]
00606
BZ2_bzBuffToBuffDecompress
[call site]
00607
arith_uncompress_O1_RLE
[function]
[call site]
00608
htscodecs_tls_alloc
[function]
[call site]
00609
SIMPLE_MODEL256_init
[function]
[call site]
00610
htscodecs_tls_alloc
[function]
[call site]
00611
htscodecs_tls_free
[function]
[call site]
00612
SIMPLE_MODEL258_init
[function]
[call site]
00613
RC_SetInput
[function]
[call site]
00614
RC_StartDecode
[function]
[call site]
00615
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00616
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00617
SIMPLE_MODEL258_normalize
[function]
[call site]
00618
RC_FinishDecode
[function]
[call site]
00619
htscodecs_tls_free
[function]
[call site]
00620
htscodecs_tls_free
[function]
[call site]
00621
htscodecs_tls_free
[function]
[call site]
00622
htscodecs_tls_free
[function]
[call site]
00623
arith_uncompress_O0_RLE
[function]
[call site]
00624
SIMPLE_MODEL256_init
[function]
[call site]
00625
htscodecs_tls_alloc
[function]
[call site]
00626
SIMPLE_MODEL258_init
[function]
[call site]
00627
RC_SetInput
[function]
[call site]
00628
RC_StartDecode
[function]
[call site]
00629
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00630
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00631
RC_FinishDecode
[function]
[call site]
00632
htscodecs_tls_free
[function]
[call site]
00633
htscodecs_tls_free
[function]
[call site]
00634
arith_uncompress_O1
[function]
[call site]
00635
htscodecs_tls_alloc
[function]
[call site]
00636
SIMPLE_MODEL256_init
[function]
[call site]
00637
RC_SetInput
[function]
[call site]
00638
RC_StartDecode
[function]
[call site]
00639
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00640
RC_FinishDecode
[function]
[call site]
00641
htscodecs_tls_free
[function]
[call site]
00642
htscodecs_tls_free
[function]
[call site]
00643
arith_uncompress_O0
[function]
[call site]
00644
SIMPLE_MODEL256_init
[function]
[call site]
00645
RC_SetInput
[function]
[call site]
00646
RC_StartDecode
[function]
[call site]
00647
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00648
RC_FinishDecode
[function]
[call site]
00649
hts_unpack
[function]
[call site]
00650
tok3_decode_names
[function]
[call site]
00651
create_context
[function]
[call site]
00652
fprintf
[call site]
00653
htscodecs_tls_alloc
[function]
[call site]
00654
uncompressed_size
[function]
[call site]
00655
var_get_u32
[function]
[call site]
00656
var_get_u32
[function]
[call site]
00657
uncompress
[function]
[call site]
00658
var_get_u32
[function]
[call site]
00659
arith_decode
[function]
[call site]
00660
var_get_u32
[function]
[call site]
00661
arith_uncompress_to
[function]
[call site]
00662
rans_decode
[function]
[call site]
00663
var_get_u32
[function]
[call site]
00664
rans_uncompress_to_4x16
[function]
[call site]
00665
decode_name
[function]
[call site]
00666
decode_token_type
[function]
[call site]
00667
decode_token_int
[function]
[call site]
00668
strlen
[call site]
00669
strcpy
[call site]
00670
strlen
[call site]
00671
decode_token_type
[function]
[call site]
00672
decode_token_char
[function]
[call site]
00673
decode_token_alpha
[function]
[call site]
00674
decode_token_int1
[function]
[call site]
00675
decode_token_int
[function]
[call site]
00676
append_uint32_fixed
[function]
[call site]
00677
decode_token_int1
[function]
[call site]
00678
append_uint32_fixed
[function]
[call site]
00679
decode_token_int
[function]
[call site]
00680
append_uint32_var
[function]
[call site]
00681
decode_token_int1
[function]
[call site]
00682
append_uint32_var
[function]
[call site]
00683
append_uint32_var
[function]
[call site]
00684
append_uint32_fixed
[function]
[call site]
00685
realloc
[call site]
00686
free_context
[function]
[call site]
00687
pool_destroy
[function]
[call site]
00688
htscodecs_tls_free
[function]
[call site]
00689
free_context
[function]
[call site]
00690
cram_free_container
[function]
[call site]
00691
cram_free_block
[function]
[call site]
00692
int32_get_blk
[function]
[call site]
00693
cram_free_container
[function]
[call site]
00694
cram_free_block
[function]
[call site]
00695
cram_free_container
[function]
[call site]
00696
cram_free_block
[function]
[call site]
00697
cram_free_block
[function]
[call site]
00698
cram_read_block
[function]
[call site]
00699
cram_free_container
[function]
[call site]
00700
cram_free_block
[function]
[call site]
00701
cram_free_container
[function]
[call site]
00702
hread
[function]
[call site]
00703
cram_free_container
[function]
[call site]
00704
cram_free_container
[function]
[call site]
00705
sam_hdr_init
[function]
[call site]
00706
calloc
[call site]
00707
sam_hdr_add_lines
[function]
[call site]
00708
sam_hdr_fill_hrecs
[function]
[call site]
00709
sam_hrecs_new
[function]
[call site]
00710
calloc
[call site]
00711
kh_init_sam_hrecs_t
[function]
[call site]
00712
calloc
[call site]
00713
kh_init_m_s2i
[function]
[call site]
00714
calloc
[call site]
00715
kh_init_m_s2i
[function]
[call site]
00716
kh_init_m_s2i
[function]
[call site]
00717
pool_create
[function]
[call site]
00718
next_power_2
[function]
[call site]
00719
pool_create
[function]
[call site]
00720
string_pool_create
[function]
[call site]
00721
sam_hrecs_init_type_order
[function]
[call site]
00722
calloc
[call site]
00723
kh_destroy_sam_hrecs_t
[function]
[call site]
00724
pool_destroy
[function]
[call site]
00725
pool_destroy
[function]
[call site]
00726
string_pool_destroy
[function]
[call site]
00727
sam_hrecs_refs_from_targets_array
[function]
[call site]
00728
hts_log
[function]
[call site]
00729
realloc
[call site]
00730
kh_grow_to_fit_m_s2i
[function]
[call site]
00731
kh_resize_m_s2i
[function]
[call site]
00732
realloc
[call site]
00733
__ac_FNV1a_hash_string
[function]
[call site]
00734
string_dup
[function]
[call site]
00735
strlen
[call site]
00736
string_ndup
[function]
[call site]
00737
string_alloc
[function]
[call site]
00738
new_string_pool
[function]
[call site]
00739
realloc
[call site]
00740
kh_get_s2i
[function]
[call site]
00741
__ac_FNV1a_hash_string
[function]
[call site]
00742
strcmp
[call site]
00743
kh_put_m_s2i
[function]
[call site]
00744
strcmp
[call site]
00745
hts_log
[function]
[call site]
00746
__errno_location
[call site]
00747
strerror
[call site]
00748
hts_log
[function]
[call site]
00749
kh_get_m_s2i
[function]
[call site]
00750
kh_del_m_s2i
[function]
[call site]
00751
sam_hrecs_free
[function]
[call site]
00752
kh_destroy_sam_hrecs_t
[function]
[call site]
00753
kh_destroy_m_s2i
[function]
[call site]
00754
kh_destroy_m_s2i
[function]
[call site]
00755
kh_destroy_m_s2i
[function]
[call site]
00756
pool_destroy
[function]
[call site]
00757
pool_destroy
[function]
[call site]
00758
string_pool_destroy
[function]
[call site]
00759
sam_hrecs_parse_lines
[function]
[call site]
00760
strlen
[call site]
00761
sam_hrecs_error
[function]
[call site]
00762
hts_log
[function]
[call site]
00763
sam_hrecs_parse_single_line
[function]
[call site]
00764
sam_hrecs_error
[function]
[call site]
00765
isalpha_c
[function]
[call site]
00766
__ctype_b_loc
[call site]
00767
sam_hrecs_error
[function]
[call site]
00768
TYPEKEY
[function]
[call site]
00769
pool_alloc
[function]
[call site]
00770
new_pool
[function]
[call site]
00771
realloc
[call site]
00772
kh_put_sam_hrecs_t
[function]
[call site]
00773
kh_resize_sam_hrecs_t
[function]
[call site]
00774
realloc
[call site]
00775
TYPEKEY
[function]
[call site]
00776
parse_comment_line
[function]
[call site]
00777
sam_hrecs_error
[function]
[call site]
00778
warn_if_known_stderr
[function]
[call site]
00779
kmemmem
[function]
[call site]
00780
ksBM_prep
[function]
[call site]
00781
calloc
[call site]
00782
calloc
[call site]
00783
known_stderr
[function]
[call site]
00784
hts_log
[function]
[call site]
00785
hts_log
[function]
[call site]
00786
kmemmem
[function]
[call site]
00787
known_stderr
[function]
[call site]
00788
kmemmem
[function]
[call site]
00789
known_stderr
[function]
[call site]
00790
pool_alloc
[function]
[call site]
00791
string_ndup
[function]
[call site]
00792
parse_noncomment_line
[function]
[call site]
00793
TYPEKEY
[function]
[call site]
00794
sam_hrecs_error
[function]
[call site]
00795
warn_if_known_stderr
[function]
[call site]
00796
sam_hrecs_error
[function]
[call site]
00797
warn_if_known_stderr
[function]
[call site]
00798
pool_alloc
[function]
[call site]
00799
string_ndup
[function]
[call site]
00800
sam_hrecs_global_list_add
[function]
[call site]
00801
TYPEKEY
[function]
[call site]
00802
__assert_fail
[call site]
00803
sam_hrecs_free_tags
[function]
[call site]
00804
sam_hrecs_free_tags
[function]
[call site]
00805
pool_free
[function]
[call site]
00806
pool_free
[function]
[call site]
00807
TYPEKEY
[function]
[call site]
00808
kh_grow_to_fit_m_s2i
[function]
[call site]
00809
realloc
[call site]
00810
sam_hrecs_update_hashes
[function]
[call site]
00811
TYPEKEY
[function]
[call site]
00812
__assert_fail
[call site]
00813
__assert_fail
[call site]
00814
strtoll
[call site]
00815
__assert_fail
[call site]
00816
hts_log
[function]
[call site]
00817
hts_log
[function]
[call site]
00818
hts_log
[function]
[call site]
00819
kh_get_m_s2i
[function]
[call site]
00820
snprintf
[call site]
00821
sam_hrecs_update
[function]
[call site]
00822
sam_hrecs_vupdate
[function]
[call site]
00823
sam_hrecs_find_key
[function]
[call site]
00824
pool_alloc
[function]
[call site]
00825
strlen
[call site]
00826
string_alloc
[function]
[call site]
00827
snprintf
[call site]
00828
sam_hrecs_add_ref_altnames
[function]
[call site]
00829
kstrtok
[function]
[call site]
00830
strchr
[call site]
00831
strlen
[call site]
00832
string_ndup
[function]
[call site]
00833
kh_put_m_s2i
[function]
[call site]
00834
hts_log
[function]
[call site]
00835
strcmp
[call site]
00836
sam_hrecs_add_ref_altnames
[function]
[call site]
00837
strcmp
[call site]
00838
hts_log
[function]
[call site]
00839
hts_log
[function]
[call site]
00840
realloc
[call site]
00841
kh_put_m_s2i
[function]
[call site]
00842
sam_hrecs_add_ref_altnames
[function]
[call site]
00843
TYPEKEY
[function]
[call site]
00844
sam_hrecs_find_key
[function]
[call site]
00845
hts_log
[function]
[call site]
00846
__assert_fail
[call site]
00847
kh_get_m_s2i
[function]
[call site]
00848
__assert_fail
[call site]
00849
hts_log
[function]
[call site]
00850
realloc
[call site]
00851
kh_put_m_s2i
[function]
[call site]
00852
TYPEKEY
[function]
[call site]
00853
realloc
[call site]
00854
__assert_fail
[call site]
00855
hts_log
[function]
[call site]
00856
kh_get_m_s2i
[function]
[call site]
00857
kh_put_m_s2i
[function]
[call site]
00858
realloc
[call site]
00859
sam_hrecs_free
[function]
[call site]
00860
add_stub_ref_sq_lines
[function]
[call site]
00861
snprintf
[call site]
00862
sam_hrecs_add
[function]
[call site]
00863
sam_hrecs_vadd
[function]
[call site]
00864
TYPEKEY
[function]
[call site]
00865
strncmp
[call site]
00866
sam_hrecs_find_type_id
[function]
[call site]
00867
kh_get_m_s2i
[function]
[call site]
00868
kh_get_m_s2i
[function]
[call site]
00869
kh_get_m_s2i
[function]
[call site]
00870
TYPEKEY
[function]
[call site]
00871
kh_get_sam_hrecs_t
[function]
[call site]
00872
sam_hrecs_vupdate
[function]
[call site]
00873
pool_alloc
[function]
[call site]
00874
kh_put_sam_hrecs_t
[function]
[call site]
00875
__assert_fail
[call site]
00876
sam_hrecs_global_list_add
[function]
[call site]
00877
__assert_fail
[call site]
00878
__assert_fail
[call site]
00879
__assert_fail
[call site]
00880
__assert_fail
[call site]
00881
strncmp
[call site]
00882
pool_alloc
[function]
[call site]
00883
strncmp
[call site]
00884
strlen
[call site]
00885
string_alloc
[function]
[call site]
00886
snprintf
[call site]
00887
strlen
[call site]
00888
string_ndup
[function]
[call site]
00889
strncmp
[call site]
00890
pool_alloc
[function]
[call site]
00891
strncmp
[call site]
00892
strlen
[call site]
00893
string_alloc
[function]
[call site]
00894
snprintf
[call site]
00895
strlen
[call site]
00896
string_ndup
[function]
[call site]
00897
TYPEKEY
[function]
[call site]
00898
sam_hrecs_update_hashes
[function]
[call site]
00899
strncmp
[call site]
00900
hts_log
[function]
[call site]
00901
sam_hrecs_free
[function]
[call site]
00902
rebuild_target_arrays
[function]
[call site]
00903
sam_hdr_update_target_arrays
[function]
[call site]
00904
realloc
[call site]
00905
realloc
[call site]
00906
strcmp
[call site]
00907
strdup
[call site]
00908
kh_get_s2i
[function]
[call site]
00909
kh_del_s2i
[function]
[call site]
00910
kh_init_s2i
[function]
[call site]
00911
calloc
[call site]
00912
kh_put_s2i
[function]
[call site]
00913
kh_resize_s2i
[function]
[call site]
00914
realloc
[call site]
00915
kh_get_s2i
[function]
[call site]
00916
kh_del_s2i
[function]
[call site]
00917
sam_hrecs_parse_lines
[function]
[call site]
00918
rebuild_target_arrays
[function]
[call site]
00919
redact_header_text
[function]
[call site]
00920
__assert_fail
[call site]
00921
sam_hdr_destroy
[function]
[call site]
00922
sam_hrecs_free
[function]
[call site]
00923
kh_destroy_s2i
[function]
[call site]
00924
cram_free_file_def
[function]
[call site]
00925
calloc
[call site]
00926
strncpy
[call site]
00927
cram_init_tables
[function]
[call site]
00928
strrchr
[call site]
00929
strdup
[call site]
00930
refs_create
[function]
[call site]
00931
calloc
[call site]
00932
string_pool_create
[function]
[call site]
00933
kh_init_refs
[function]
[call site]
00934
calloc
[call site]
00935
pthread_mutex_init
[call site]
00936
refs_free
[function]
[call site]
00937
string_pool_destroy
[function]
[call site]
00938
ref_entry_free_seq
[function]
[call site]
00939
mfclose
[function]
[call site]
00940
mfflush
[function]
[call site]
00941
fwrite
[call site]
00942
fflush
[call site]
00943
fseek
[call site]
00944
fwrite
[call site]
00945
fflush
[call site]
00946
ftell
[call site]
00947
fileno
[call site]
00948
ftell
[call site]
00949
ftruncate
[call site]
00950
munmap
[call site]
00951
fclose
[call site]
00952
mfdestroy
[function]
[call site]
00953
kh_destroy_refs
[function]
[call site]
00954
bgzf_close
[function]
[call site]
00955
bgzf_flush
[function]
[call site]
00956
mt_queue
[function]
[call site]
00957
pthread_mutex_lock
[call site]
00958
pool_alloc
[function]
[call site]
00959
pthread_mutex_unlock
[call site]
00960
hts_tpool_dispatch3
[function]
[call site]
00961
pthread_mutex_lock
[call site]
00962
pthread_mutex_unlock
[call site]
00963
__errno_location
[call site]
00964
pthread_mutex_unlock
[call site]
00965
pthread_cond_wait
[call site]
00966
pthread_mutex_unlock
[call site]
00967
wake_next_worker
[function]
[call site]
00968
pthread_mutex_lock
[call site]
00969
__assert_fail
[call site]
00970
__assert_fail
[call site]
00971
pthread_cond_signal
[call site]
00972
pthread_mutex_unlock
[call site]
00973
pthread_mutex_unlock
[call site]
00974
bgzf_encode_level0_func
[function]
[call site]
00975
u16_to_le
[function]
[call site]
00976
u16_to_le
[function]
[call site]
00977
u16_to_le
[function]
[call site]
00978
hts_crc32
[function]
[call site]
00979
crc32
[call site]
00980
u32_to_le
[function]
[call site]
00981
u32_to_le
[function]
[call site]
00982
job_cleanup
[function]
[call site]
00983
pthread_mutex_lock
[call site]
00984
pool_free
[function]
[call site]
00985
pthread_mutex_unlock
[call site]
00986
hts_tpool_dispatch3
[function]
[call site]
00987
bgzf_encode_func
[function]
[call site]
00988
bgzf_compress
[function]
[call site]
00989
u16_to_le
[function]
[call site]
00990
u16_to_le
[function]
[call site]
00991
deflateInit2_
[call site]
00992
bgzf_zerr
[function]
[call site]
00993
hts_log
[function]
[call site]
00994
deflate
[call site]
00995
deflateEnd
[call site]
00996
bgzf_zerr
[function]
[call site]
00997
hts_log
[function]
[call site]
00998
deflateEnd
[call site]
00999
deflateEnd
[call site]
01000
bgzf_zerr
[function]
[call site]
01001
hts_log
[function]
[call site]
01002
packInt16
[function]
[call site]
01003
crc32
[call site]
01004
packInt32
[function]
[call site]
01005
packInt32
[function]
[call site]
01006
job_cleanup
[function]
[call site]
01007
job_cleanup
[function]
[call site]
01008
pthread_mutex_lock
[call site]
01009
pthread_mutex_unlock
[call site]
01010
mt_flush_queue
[function]
[call site]
01011
pthread_mutex_lock
[call site]
01012
hts_tpool_process_is_shutdown
[function]
[call site]
01013
pthread_mutex_lock
[call site]
01014
pthread_mutex_unlock
[call site]
01015
pthread_mutex_unlock
[call site]
01016
hts_usleep
[function]
[call site]
01017
nanosleep
[call site]
01018
pthread_mutex_lock
[call site]
01019
pthread_mutex_unlock
[call site]
01020
hts_tpool_process_flush
[function]
[call site]
01021
pthread_mutex_lock
[call site]
01022
pthread_cond_signal
[call site]
01023
pthread_cond_wait
[call site]
01024
gettimeofday
[call site]
01025
pthread_cond_timedwait
[call site]
01026
gettimeofday
[call site]
01027
pthread_cond_timedwait
[call site]
01028
pthread_mutex_unlock
[call site]
01029
pthread_mutex_lock
[call site]
01030
pthread_mutex_unlock
[call site]
01031
hflush
[function]
[call site]
01032
flush_buffer
[function]
[call site]
01033
__errno_location
[call site]
01034
bgzf_index_add_block
[function]
[call site]
01035
realloc
[call site]
01036
deflate_block
[function]
[call site]
01037
bgzf_compress
[function]
[call site]
01038
bgzf_gzip_compress
[function]
[call site]
01039
deflate
[call site]
01040
bgzf_zerr
[function]
[call site]
01041
hts_log
[function]
[call site]
01042
hts_log
[function]
[call site]
01043
hts_log
[function]
[call site]
01044
bgzf_zerr
[function]
[call site]
01045
hts_log
[function]
[call site]
01046
hwrite
[function]
[call site]
01047
hfile_set_blksize
[function]
[call site]
01048
realloc
[call site]
01049
hwrite2
[function]
[call site]
01050
flush_buffer
[function]
[call site]
01051
__errno_location
[call site]
01052
hwrite2
[function]
[call site]
01053
hts_log
[function]
[call site]
01054
bgzf_close_mt
[function]
[call site]
01055
mt_destroy
[function]
[call site]
01056
pthread_mutex_lock
[call site]
01057
pthread_cond_signal
[call site]
01058
hts_tpool_wake_dispatch
[function]
[call site]
01059
pthread_mutex_lock
[call site]
01060
pthread_cond_signal
[call site]
01061
pthread_mutex_unlock
[call site]
01062
pthread_mutex_unlock
[call site]
01063
hts_tpool_process_is_shutdown
[function]
[call site]
01064
hts_tpool_process_destroy
[function]
[call site]
01065
pthread_mutex_lock
[call site]
01066
pthread_mutex_unlock
[call site]
01067
hts_tpool_process_reset
[function]
[call site]
01068
pthread_mutex_lock
[call site]
01069
pthread_mutex_unlock
[call site]
01070
hts_tpool_delete_result
[function]
[call site]
01071
hts_tpool_process_flush
[function]
[call site]
01072
pthread_mutex_lock
[call site]
01073
pthread_cond_signal
[call site]
01074
pthread_mutex_unlock
[call site]
01075
hts_tpool_delete_result
[function]
[call site]
01076
pthread_mutex_lock
[call site]
01077
hts_tpool_process_detach_locked
[function]
[call site]
01078
hts_tpool_process_shutdown_locked
[function]
[call site]
01079
pthread_cond_broadcast
[call site]
01080
pthread_cond_broadcast
[call site]
01081
pthread_cond_broadcast
[call site]
01082
pthread_cond_broadcast
[call site]
01083
pthread_mutex_unlock
[call site]
01084
pthread_cond_destroy
[call site]
01085
pthread_cond_destroy
[call site]
01086
pthread_cond_destroy
[call site]
01087
pthread_cond_destroy
[call site]
01088
pthread_mutex_unlock
[call site]
01089
pthread_join
[call site]
01090
pthread_mutex_destroy
[call site]
01091
pthread_mutex_destroy
[call site]
01092
pthread_mutex_destroy
[call site]
01093
pthread_cond_destroy
[call site]
01094
pool_free
[function]
[call site]
01095
hts_tpool_destroy
[function]
[call site]
01096
pthread_mutex_lock
[call site]
01097
pthread_cond_signal
[call site]
01098
pthread_mutex_unlock
[call site]
01099
pthread_join
[call site]
01100
pthread_mutex_destroy
[call site]
01101
pthread_cond_destroy
[call site]
01102
pool_destroy
[function]
[call site]
01103
fflush
[call site]
01104
deflate_block
[function]
[call site]
01105
bgzf_zerr
[function]
[call site]
01106
hts_log
[function]
[call site]
01107
bgzf_close_mt
[function]
[call site]
01108
hwrite
[function]
[call site]
01109
hflush
[function]
[call site]
01110
hts_log
[function]
[call site]
01111
bgzf_close_mt
[function]
[call site]
01112
inflateEnd
[call site]
01113
deflateEnd
[call site]
01114
bgzf_zerr
[function]
[call site]
01115
hts_log
[function]
[call site]
01116
hclose
[function]
[call site]
01117
writebuffer_is_nonempty
[function]
[call site]
01118
hflush
[function]
[call site]
01119
__errno_location
[call site]
01120
hfile_destroy
[function]
[call site]
01121
__errno_location
[call site]
01122
bgzf_index_destroy
[function]
[call site]
01123
free_cache
[function]
[call site]
01124
kh_destroy_bgzf_cache
[function]
[call site]
01125
bgzf_clear_private_data
[function]
[call site]
01126
__assert_fail
[call site]
01127
pthread_mutex_destroy
[call site]
01128
pthread_mutex_init
[call site]
01129
pthread_mutex_init
[call site]
01130
pthread_mutex_init
[call site]
01131
pthread_mutex_init
[call site]
01132
cram_new_metrics
[function]
[call site]
01133
calloc
[call site]
01134
kh_init_m_metrics
[function]
[call site]
01135
calloc
[call site]
01136
refs_from_header
[function]
[call site]
01137
sam_hdr_fill_hrecs
[function]
[call site]
01138
realloc
[call site]
01139
kh_get_refs
[function]
[call site]
01140
__ac_FNV1a_hash_string
[function]
[call site]
01141
strcmp
[call site]
01142
calloc
[call site]
01143
string_dup
[function]
[call site]
01144
sam_hrecs_find_type_id
[function]
[call site]
01145
sam_hrecs_find_key
[function]
[call site]
01146
string_dup
[function]
[call site]
01147
sam_hrecs_find_key
[function]
[call site]
01148
strtoll
[call site]
01149
kh_put_refs
[function]
[call site]
01150
kh_resize_refs
[function]
[call site]
01151
realloc
[call site]
01152
cram_set_option
[function]
[call site]
01153
cram_set_voption
[function]
[call site]
01154
__errno_location
[call site]
01155
strdup
[call site]
01156
refs_free
[function]
[call site]
01157
cram_seek_to_refpos
[function]
[call site]
01158
cram_index_query
[function]
[call site]
01159
cram_seek
[function]
[call site]
01160
cram_drain_rqueue
[function]
[call site]
01161
hts_tpool_process_empty
[function]
[call site]
01162
pthread_mutex_lock
[call site]
01163
pthread_mutex_unlock
[call site]
01164
hts_tpool_next_result_wait
[function]
[call site]
01165
pthread_mutex_lock
[call site]
01166
hts_tpool_next_result_locked
[function]
[call site]
01167
pthread_cond_signal
[call site]
01168
wake_next_worker
[function]
[call site]
01169
gettimeofday
[call site]
01170
pthread_mutex_unlock
[call site]
01171
hts_tpool_process_destroy
[function]
[call site]
01172
pthread_cond_timedwait
[call site]
01173
pthread_mutex_unlock
[call site]
01174
hts_tpool_result_data
[function]
[call site]
01175
cram_free_container
[function]
[call site]
01176
cram_free_slice
[function]
[call site]
01177
hts_tpool_delete_result
[function]
[call site]
01178
cram_free_container
[function]
[call site]
01179
cram_free_slice
[function]
[call site]
01180
cram_free_container
[function]
[call site]
01181
hseek
[function]
[call site]
01182
pthread_mutex_lock
[call site]
01183
pthread_mutex_unlock
[call site]
01184
cram_free_container
[function]
[call site]
01185
cram_free_container
[function]
[call site]
01186
pthread_mutex_lock
[call site]
01187
pthread_mutex_unlock
[call site]
01188
pthread_mutex_lock
[call site]
01189
pthread_mutex_unlock
[call site]
01190
pthread_mutex_lock
[call site]
01191
pthread_mutex_unlock
[call site]
01192
cram_load_reference
[function]
[call site]
01193
refs_load_fai
[function]
[call site]
01194
strlen
[call site]
01195
refs_create
[function]
[call site]
01196
bgzf_close
[function]
[call site]
01197
strstr
[call site]
01198
string_ndup
[function]
[call site]
01199
snprintf
[call site]
01200
strcmp
[call site]
01201
string_ndup
[function]
[call site]
01202
snprintf
[call site]
01203
string_dup
[function]
[call site]
01204
snprintf
[call site]
01205
bgzf_open_ref
[function]
[call site]
01206
strncmp
[call site]
01207
hisremote
[function]
[call site]
01208
find_scheme_handler
[function]
[call site]
01209
snprintf
[call site]
01210
access
[call site]
01211
fai_build
[function]
[call site]
01212
fai_build3
[function]
[call site]
01213
fai_build3_core
[function]
[call site]
01214
bgzf_open
[function]
[call site]
01215
strchr
[call site]
01216
hopen
[function]
[call site]
01217
bgzf_read_init
[function]
[call site]
01218
hclose_abruptly
[function]
[call site]
01219
strchr
[call site]
01220
hopen
[function]
[call site]
01221
bgzf_write_init
[function]
[call site]
01222
__errno_location
[call site]
01223
ed_is_big
[function]
[call site]
01224
__errno_location
[call site]
01225
strerror
[call site]
01226
hts_log
[function]
[call site]
01227
bgzf_index_build_init
[function]
[call site]
01228
bgzf_index_destroy
[function]
[call site]
01229
calloc
[call site]
01230
hts_log
[function]
[call site]
01231
fai_build_core
[function]
[call site]
01232
calloc
[call site]
01233
kh_init_s
[function]
[call site]
01234
calloc
[call site]
01235
bgzf_getc_
[function]
[call site]
01236
bgzf_getc
[function]
[call site]
01237
bgzf_read_block
[function]
[call site]
01238
hts_tpool_next_result_wait
[function]
[call site]
01239
hts_tpool_result_data
[function]
[call site]
01240
mt_destroy
[function]
[call site]
01241
hts_tpool_delete_result
[function]
[call site]
01242
hts_log
[function]
[call site]
01243
hts_tpool_delete_result
[function]
[call site]
01244
hts_log
[function]
[call site]
01245
hts_tpool_delete_result
[function]
[call site]
01246
bgzf_index_add_block
[function]
[call site]
01247
pthread_mutex_lock
[call site]
01248
pool_free
[function]
[call site]
01249
pthread_mutex_unlock
[call site]
01250
hts_tpool_delete_result
[function]
[call site]
01251
bgzf_htell
[function]
[call site]
01252
pthread_mutex_lock
[call site]
01253
pthread_mutex_unlock
[call site]
01254
htell
[function]
[call site]
01255
hread
[function]
[call site]
01256
__errno_location
[call site]
01257
strerror
[call site]
01258
hts_log
[function]
[call site]
01259
inflate_gzip_block
[function]
[call site]
01260
hread
[function]
[call site]
01261
inflate
[call site]
01262
bgzf_zerr
[function]
[call site]
01263
hts_log
[function]
[call site]
01264
hpeek
[function]
[call site]
01265
inflateReset
[call site]
01266
bgzf_zerr
[function]
[call site]
01267
hts_log
[function]
[call site]
01268
hts_log
[function]
[call site]
01269
hts_log
[function]
[call site]
01270
load_block_from_cache
[function]
[call site]
01271
kh_get_bgzf_cache
[function]
[call site]
01272
hseek
[function]
[call site]
01273
hts_log
[function]
[call site]
01274
exit
[call site]
01275
hread
[function]
[call site]
01276
hts_log
[function]
[call site]
01277
check_header
[function]
[call site]
01278
unpackInt16
[function]
[call site]
01279
unpackInt16
[function]
[call site]
01280
hts_log
[function]
[call site]
01281
hread
[function]
[call site]
01282
calloc
[call site]
01283
inflateInit2_
[call site]
01284
bgzf_zerr
[function]
[call site]
01285
hts_log
[function]
[call site]
01286
inflate_gzip_block
[function]
[call site]
01287
hts_log
[function]
[call site]
01288
unpackInt16
[function]
[call site]
01289
hts_log
[function]
[call site]
01290
hread
[function]
[call site]
01291
hts_log
[function]
[call site]
01292
inflate_block
[function]
[call site]
01293
le_to_u32
[function]
[call site]
01294
bgzf_uncompress
[function]
[call site]
01295
inflateInit2_
[call site]
01296
bgzf_zerr
[function]
[call site]
01297
hts_log
[function]
[call site]
01298
inflate
[call site]
01299
bgzf_zerr
[function]
[call site]
01300
inflateEnd
[call site]
01301
bgzf_zerr
[function]
[call site]
01302
hts_log
[function]
[call site]
01303
inflateEnd
[call site]
01304
bgzf_zerr
[function]
[call site]
01305
hts_log
[function]
[call site]
01306
crc32
[call site]
01307
hts_log
[function]
[call site]
01308
bgzf_zerr
[function]
[call site]
01309
hts_log
[function]
[call site]
01310
bgzf_htell
[function]
[call site]
01311
bgzf_index_add_block
[function]
[call site]
01312
cache_block
[function]
[call site]
01313
kh_del_bgzf_cache
[function]
[call site]
01314
kh_put_bgzf_cache
[function]
[call site]
01315
kh_resize_bgzf_cache
[function]
[call site]
01316
realloc
[call site]
01317
bgzf_htell
[function]
[call site]
01318
hts_log
[function]
[call site]
01319
hts_log
[function]
[call site]
01320
bgzf_getc_
[function]
[call site]
01321
hts_log
[function]
[call site]
01322
__ctype_b_loc
[call site]
01323
hts_log
[function]
[call site]
01324
fai_insert_index
[function]
[call site]
01325
hts_log
[function]
[call site]
01326
strdup
[call site]
01327
kh_put_s
[function]
[call site]
01328
kh_resize_s
[function]
[call site]
01329
realloc
[call site]
01330
__ac_FNV1a_hash_string
[function]
[call site]
01331
strcmp
[call site]
01332
hts_log
[function]
[call site]
01333
realloc
[call site]
01334
hts_log
[function]
[call site]
01335
__ctype_b_loc
[call site]
01336
kputc
[function]
[call site]
01337
bgzf_getc_
[function]
[call site]
01338
kputsn
[function]
[call site]
01339
hts_log
[function]
[call site]
01340
bgzf_getc_
[function]
[call site]
01341
bgzf_utell
[function]
[call site]
01342
bgzf_getc_
[function]
[call site]
01343
bgzf_utell
[function]
[call site]
01344
hts_log
[function]
[call site]
01345
isgraph_
[function]
[call site]
01346
bgzf_getc_
[function]
[call site]
01347
hts_log
[function]
[call site]
01348
bgzf_getc_
[function]
[call site]
01349
bgzf_utell
[function]
[call site]
01350
hts_log
[function]
[call site]
01351
hts_log
[function]
[call site]
01352
isgraph_
[function]
[call site]
01353
bgzf_getc_
[function]
[call site]
01354
hts_log
[function]
[call site]
01355
hts_log
[function]
[call site]
01356
hts_log
[function]
[call site]
01357
fai_insert_index
[function]
[call site]
01358
hts_log
[function]
[call site]
01359
fai_destroy
[function]
[call site]
01360
kh_destroy_s
[function]
[call site]
01361
bgzf_close
[function]
[call site]
01362
hts_log
[function]
[call site]
01363
ksprintf
[function]
[call site]
01364
ksprintf
[function]
[call site]
01365
bgzf_index_dump
[function]
[call site]
01366
hts_log
[function]
[call site]
01367
__errno_location
[call site]
01368
get_name_suffix
[function]
[call site]
01369
strlen
[call site]
01370
snprintf
[call site]
01371
hopen
[function]
[call site]
01372
bgzf_index_dump_hfile
[function]
[call site]
01373
hts_log
[function]
[call site]
01374
__errno_location
[call site]
01375
bgzf_flush
[function]
[call site]
01376
hwrite_uint64
[function]
[call site]
01377
ed_is_big
[function]
[call site]
01378
ed_swap_8
[function]
[call site]
01379
hwrite
[function]
[call site]
01380
hwrite_uint64
[function]
[call site]
01381
hwrite_uint64
[function]
[call site]
01382
__errno_location
[call site]
01383
strerror
[call site]
01384
hts_log
[function]
[call site]
01385
hclose
[function]
[call site]
01386
__errno_location
[call site]
01387
strerror
[call site]
01388
hts_log
[function]
[call site]
01389
hclose_abruptly
[function]
[call site]
01390
hts_log
[function]
[call site]
01391
bgzf_close
[function]
[call site]
01392
__errno_location
[call site]
01393
strerror
[call site]
01394
hts_log
[function]
[call site]
01395
hopen
[function]
[call site]
01396
__errno_location
[call site]
01397
strerror
[call site]
01398
hts_log
[function]
[call site]
01399
fai_save
[function]
[call site]
01400
kh_get_s
[function]
[call site]
01401
__assert_fail
[call site]
01402
snprintf
[call site]
01403
snprintf
[call site]
01404
hputs
[function]
[call site]
01405
strlen
[call site]
01406
hputs2
[function]
[call site]
01407
hwrite2
[function]
[call site]
01408
hputs
[function]
[call site]
01409
__errno_location
[call site]
01410
strerror
[call site]
01411
hts_log
[function]
[call site]
01412
hclose
[function]
[call site]
01413
__errno_location
[call site]
01414
strerror
[call site]
01415
hts_log
[function]
[call site]
01416
fai_destroy
[function]
[call site]
01417
__errno_location
[call site]
01418
bgzf_close
[function]
[call site]
01419
fai_destroy
[function]
[call site]
01420
__errno_location
[call site]
01421
bgzf_open
[function]
[call site]
01422
perror
[call site]
01423
bgzf_index_load
[function]
[call site]
01424
get_name_suffix
[function]
[call site]
01425
hopen
[function]
[call site]
01426
bgzf_index_load_hfile
[function]
[call site]
01427
calloc
[call site]
01428
hread_uint64
[function]
[call site]
01429
hread
[function]
[call site]
01430
ed_is_big
[function]
[call site]
01431
ed_swap_8p
[function]
[call site]
01432
hread_uint64
[function]
[call site]
01433
hread_uint64
[function]
[call site]
01434
__errno_location
[call site]
01435
strerror
[call site]
01436
hts_log
[function]
[call site]
01437
hclose
[function]
[call site]
01438
__errno_location
[call site]
01439
strerror
[call site]
01440
hts_log
[function]
[call site]
01441
hclose_abruptly
[function]
[call site]
01442
hts_log
[function]
[call site]
01443
bgzf_close
[function]
[call site]
01444
hts_log
[function]
[call site]
01445
hopen
[function]
[call site]
01446
hts_log
[function]
[call site]
01447
perror
[call site]
01448
hgets
[function]
[call site]
01449
__errno_location
[call site]
01450
hgetln
[function]
[call site]
01451
hgetdelim
[function]
[call site]
01452
__errno_location
[call site]
01453
writebuffer_is_nonempty
[function]
[call site]
01454
__errno_location
[call site]
01455
memchr
[call site]
01456
refill_buffer
[function]
[call site]
01457
isspace_c
[function]
[call site]
01458
string_dup
[function]
[call site]
01459
isspace_c
[function]
[call site]
01460
strtoll
[call site]
01461
isspace_c
[function]
[call site]
01462
strtoll
[call site]
01463
isspace_c
[function]
[call site]
01464
strtol
[call site]
01465
isspace_c
[function]
[call site]
01466
strtol
[call site]
01467
kh_put_refs
[function]
[call site]
01468
realloc
[call site]
01469
hclose
[function]
[call site]
01470
hclose_abruptly
[function]
[call site]
01471
refs_free
[function]
[call site]
01472
sanitise_SQ_lines
[function]
[call site]
01473
kh_get_refs
[function]
[call site]
01474
strcmp
[call site]
01475
__assert_fail
[call site]
01476
hts_log
[function]
[call site]
01477
refs_free
[function]
[call site]
01478
refs_create
[function]
[call site]
01479
refs_from_header
[function]
[call site]
01480
refs2id
[function]
[call site]
01481
calloc
[call site]
01482
kh_get_refs
[function]
[call site]
01483
hts_log
[function]
[call site]
01484
__isoc99_sscanf
[call site]
01485
hts_log
[function]
[call site]
01486
hts_log
[function]
[call site]
01487
__errno_location
[call site]
01488
hts_log
[function]
[call site]
01489
cram_init_tables
[function]
[call site]
01490
hts_tpool_init
[function]
[call site]
01491
pthread_mutexattr_init
[call site]
01492
pthread_mutexattr_settype
[call site]
01493
pthread_mutex_init
[call site]
01494
pthread_mutexattr_destroy
[call site]
01495
pthread_mutex_lock
[call site]
01496
pthread_attr_init
[call site]
01497
pthread_attr_getstacksize
[call site]
01498
pthread_attr_setstacksize
[call site]
01499
pthread_cond_init
[call site]
01500
pthread_create
[call site]
01501
tpool_worker
[function]
[call site]
01502
pthread_mutex_lock
[call site]
01503
__assert_fail
[call site]
01504
pthread_cond_wait
[call site]
01505
__assert_fail
[call site]
01506
pthread_cond_broadcast
[call site]
01507
pthread_cond_signal
[call site]
01508
pthread_mutex_unlock
[call site]
01509
hts_tpool_add_result
[function]
[call site]
01510
pthread_mutex_lock
[call site]
01511
pthread_cond_signal
[call site]
01512
pthread_mutex_unlock
[call site]
01513
pthread_mutex_unlock
[call site]
01514
hts_tpool_process_shutdown
[function]
[call site]
01515
pthread_mutex_lock
[call site]
01516
hts_tpool_process_shutdown_locked
[function]
[call site]
01517
pthread_mutex_unlock
[call site]
01518
__assert_fail
[call site]
01519
pthread_cond_broadcast
[call site]
01520
pthread_mutex_unlock
[call site]
01521
pthread_mutex_lock
[call site]
01522
hts_tpool_process_destroy
[function]
[call site]
01523
pthread_mutex_unlock
[call site]
01524
pthread_mutex_lock
[call site]
01525
hts_tpool_process_shutdown_locked
[function]
[call site]
01526
pthread_mutex_unlock
[call site]
01527
pthread_mutex_unlock
[call site]
01528
pthread_attr_destroy
[call site]
01529
__errno_location
[call site]
01530
__errno_location
[call site]
01531
strerror
[call site]
01532
hts_log
[function]
[call site]
01533
pthread_mutex_unlock
[call site]
01534
pthread_join
[call site]
01535
pthread_cond_destroy
[call site]
01536
pthread_mutex_destroy
[call site]
01537
pthread_attr_destroy
[call site]
01538
__errno_location
[call site]
01539
hts_tpool_process_init
[function]
[call site]
01540
pthread_cond_init
[call site]
01541
pthread_cond_init
[call site]
01542
pthread_cond_init
[call site]
01543
pthread_cond_init
[call site]
01544
hts_tpool_process_attach
[function]
[call site]
01545
pthread_mutex_lock
[call site]
01546
__assert_fail
[call site]
01547
pthread_mutex_unlock
[call site]
01548
hts_tpool_size
[function]
[call site]
01549
hts_tpool_process_init
[function]
[call site]
01550
hts_log
[function]
[call site]
01551
__errno_location
[call site]
01552
bgzf_hopen
[function]
[call site]
01553
__errno_location
[call site]
01554
hts_process_opts
[function]
[call site]
01555
hts_parse_opt_list
[function]
[call site]
01556
strncpy
[call site]
01557
hts_opt_add
[function]
[call site]
01558
strdup
[call site]
01559
strchr
[call site]
01560
strcmp
[call site]
01561
strcmp
[call site]
01562
atoi
[call site]
01563
strcmp
[call site]
01564
strcmp
[call site]
01565
atoi
[call site]
01566
strcmp
[call site]
01567
strcmp
[call site]
01568
atoi
[call site]
01569
strcmp
[call site]
01570
strcmp
[call site]
01571
atoi
[call site]
01572
strcmp
[call site]
01573
strcmp
[call site]
01574
atoi
[call site]
01575
strcmp
[call site]
01576
strcmp
[call site]
01577
atoi
[call site]
01578
strcmp
[call site]
01579
strcmp
[call site]
01580
atoi
[call site]
01581
strcmp
[call site]
01582
strcmp
[call site]
01583
atoi
[call site]
01584
strcmp
[call site]
01585
strcmp
[call site]
01586
atoi
[call site]
01587
strcmp
[call site]
01588
strcmp
[call site]
01589
atoi
[call site]
01590
strcmp
[call site]
01591
strcmp
[call site]
01592
atoi
[call site]
01593
strcmp
[call site]
01594
strcmp
[call site]
01595
atoi
[call site]
01596
strcmp
[call site]
01597
strcmp
[call site]
01598
atoi
[call site]
01599
strcmp
[call site]
01600
strcmp
[call site]
01601
atoi
[call site]
01602
strcmp
[call site]
01603
atoi
[call site]
01604
strcmp
[call site]
01605
strcmp
[call site]
01606
strcmp
[call site]
01607
strcmp
[call site]
01608
strcmp
[call site]
01609
strcmp
[call site]
01610
strcmp
[call site]
01611
strcmp
[call site]
01612
strcmp
[call site]
01613
strcmp
[call site]
01614
strcmp
[call site]
01615
strcmp
[call site]
01616
strcmp
[call site]
01617
strcmp
[call site]
01618
atoi
[call site]
01619
strcmp
[call site]
01620
strcmp
[call site]
01621
atoi
[call site]
01622
strcmp
[call site]
01623
strcmp
[call site]
01624
strtol
[call site]
01625
hts_log
[function]
[call site]
01626
strcmp
[call site]
01627
strcmp
[call site]
01628
strtol
[call site]
01629
strcmp
[call site]
01630
strcmp
[call site]
01631
strtol
[call site]
01632
strcmp
[call site]
01633
strcmp
[call site]
01634
strcmp
[call site]
01635
strcmp
[call site]
01636
atoi
[call site]
01637
strcmp
[call site]
01638
strcmp
[call site]
01639
atoi
[call site]
01640
strcmp
[call site]
01641
strcmp
[call site]
01642
strtol
[call site]
01643
strcmp
[call site]
01644
strcmp
[call site]
01645
strtol
[call site]
01646
strcmp
[call site]
01647
strcmp
[call site]
01648
strcmp
[call site]
01649
strcmp
[call site]
01650
strcmp
[call site]
01651
strcmp
[call site]
01652
strcmp
[call site]
01653
strcmp
[call site]
01654
strcmp
[call site]
01655
strcmp
[call site]
01656
strcmp
[call site]
01657
strcmp
[call site]
01658
strcmp
[call site]
01659
strcmp
[call site]
01660
strcmp
[call site]
01661
strcmp
[call site]
01662
hts_log
[function]
[call site]
01663
hts_opt_apply
[function]
[call site]
01664
strdup
[call site]
01665
hts_set_opt
[function]
[call site]
01666
hts_set_threads
[function]
[call site]
01667
sam_set_threads
[function]
[call site]
01668
hts_tpool_init
[function]
[call site]
01669
sam_set_thread_pool
[function]
[call site]
01670
sam_state_create
[function]
[call site]
01671
calloc
[call site]
01672
pthread_mutex_init
[call site]
01673
pthread_mutex_init
[call site]
01674
pthread_cond_init
[call site]
01675
hts_tpool_size
[function]
[call site]
01676
hts_tpool_process_init
[function]
[call site]
01677
sam_state_destroy
[function]
[call site]
01678
pthread_mutex_lock
[call site]
01679
pthread_cond_signal
[call site]
01680
hts_tpool_wake_dispatch
[function]
[call site]
01681
hts_tpool_wake_dispatch
[function]
[call site]
01682
pthread_mutex_unlock
[call site]
01683
hts_usleep
[function]
[call site]
01684
pthread_mutex_lock
[call site]
01685
pthread_mutex_unlock
[call site]
01686
hts_tpool_dispatch
[function]
[call site]
01687
hts_tpool_dispatch3
[function]
[call site]
01688
sam_format_worker
[function]
[call site]
01689
pthread_mutex_lock
[call site]
01690
pthread_mutex_unlock
[call site]
01691
calloc
[call site]
01692
sam_state_err
[function]
[call site]
01693
pthread_mutex_lock
[call site]
01694
pthread_mutex_unlock
[call site]
01695
sam_format1_append
[function]
[call site]
01696
kputsn_
[function]
[call site]
01697
__errno_location
[call site]
01698
ks_resize
[function]
[call site]
01699
kputc_
[function]
[call site]
01700
ks_resize
[function]
[call site]
01701
kputw
[function]
[call site]
01702
ks_resize
[function]
[call site]
01703
kputuw
[function]
[call site]
01704
ks_resize
[function]
[call site]
01705
ks_resize
[function]
[call site]
01706
kputc_
[function]
[call site]
01707
kputs
[function]
[call site]
01708
kputc_
[function]
[call site]
01709
kputsn_
[function]
[call site]
01710
kputll
[function]
[call site]
01711
ks_resize
[function]
[call site]
01712
kputuw
[function]
[call site]
01713
kputc_
[function]
[call site]
01714
kputw
[function]
[call site]
01715
kputc_
[function]
[call site]
01716
kputw
[function]
[call site]
01717
kputc_
[function]
[call site]
01718
kputc_
[function]
[call site]
01719
kputc_
[function]
[call site]
01720
kputsn_
[function]
[call site]
01721
kputsn_
[function]
[call site]
01722
kputs
[function]
[call site]
01723
kputc_
[function]
[call site]
01724
kputll
[function]
[call site]
01725
kputc_
[function]
[call site]
01726
kputll
[function]
[call site]
01727
kputc_
[function]
[call site]
01728
ks_resize
[function]
[call site]
01729
nibble2base
[function]
[call site]
01730
add33
[function]
[call site]
01731
kputsn_
[function]
[call site]
01732
kputc_
[function]
[call site]
01733
sam_format_aux1
[function]
[call site]
01734
kputsn_
[function]
[call site]
01735
kputc_
[function]
[call site]
01736
kputsn_
[function]
[call site]
01737
kputw
[function]
[call site]
01738
kputsn_
[function]
[call site]
01739
kputw
[function]
[call site]
01740
kputsn_
[function]
[call site]
01741
le_to_u16
[function]
[call site]
01742
kputuw
[function]
[call site]
01743
kputsn_
[function]
[call site]
01744
le_to_i16
[function]
[call site]
01745
le_to_u16
[function]
[call site]
01746
kputw
[function]
[call site]
01747
kputsn_
[function]
[call site]
01748
le_to_u32
[function]
[call site]
01749
kputuw
[function]
[call site]
01750
kputsn_
[function]
[call site]
01751
le_to_i32
[function]
[call site]
01752
le_to_u32
[function]
[call site]
01753
kputw
[function]
[call site]
01754
kputsn_
[function]
[call site]
01755
kputc_
[function]
[call site]
01756
le_to_float
[function]
[call site]
01757
le_to_u32
[function]
[call site]
01758
ksprintf
[function]
[call site]
01759
le_to_double
[function]
[call site]
01760
le_to_u64
[function]
[call site]
01761
ksprintf
[function]
[call site]
01762
kputc_
[function]
[call site]
01763
kputc_
[function]
[call site]
01764
kputc_
[function]
[call site]
01765
kputsn
[function]
[call site]
01766
le_to_u32
[function]
[call site]
01767
kputsn_
[function]
[call site]
01768
kputc
[function]
[call site]
01769
ks_expand
[function]
[call site]
01770
__errno_location
[call site]
01771
ks_resize
[function]
[call site]
01772
kputw
[function]
[call site]
01773
ks_expand
[function]
[call site]
01774
kputuw
[function]
[call site]
01775
ks_expand
[function]
[call site]
01776
le_to_i16
[function]
[call site]
01777
kputw
[function]
[call site]
01778
ks_expand
[function]
[call site]
01779
le_to_u16
[function]
[call site]
01780
kputuw
[function]
[call site]
01781
ks_expand
[function]
[call site]
01782
le_to_i32
[function]
[call site]
01783
kputw
[function]
[call site]
01784
ks_expand
[function]
[call site]
01785
le_to_u32
[function]
[call site]
01786
kputuw
[function]
[call site]
01787
ks_expand
[function]
[call site]
01788
le_to_float
[function]
[call site]
01789
kputd
[function]
[call site]
01790
__errno_location
[call site]
01791
hts_log
[function]
[call site]
01792
__errno_location
[call site]
01793
kputsn
[function]
[call site]
01794
hts_log
[function]
[call site]
01795
__errno_location
[call site]
01796
hts_log
[function]
[call site]
01797
__errno_location
[call site]
01798
__errno_location
[call site]
01799
sam_state_err
[function]
[call site]
01800
kputc
[function]
[call site]
01801
pthread_mutex_lock
[call site]
01802
pthread_mutex_unlock
[call site]
01803
hts_tpool_process_flush
[function]
[call site]
01804
pthread_mutex_lock
[call site]
01805
pthread_mutex_unlock
[call site]
01806
hts_tpool_process_empty
[function]
[call site]
01807
hts_usleep
[function]
[call site]
01808
pthread_mutex_lock
[call site]
01809
hts_tpool_process_is_shutdown
[function]
[call site]
01810
pthread_mutex_unlock
[call site]
01811
hts_tpool_process_shutdown
[function]
[call site]
01812
pthread_join
[call site]
01813
hts_tpool_process_destroy
[function]
[call site]
01814
hts_tpool_destroy
[function]
[call site]
01815
pthread_mutex_destroy
[call site]
01816
pthread_mutex_destroy
[call site]
01817
pthread_cond_destroy
[call site]
01818
sam_free_sp_bams
[function]
[call site]
01819
sam_free_sp_bams
[function]
[call site]
01820
bam_hdr_destroy
[function]
[call site]
01821
sam_hdr_destroy
[function]
[call site]
01822
bgzf_thread_pool
[function]
[call site]
01823
calloc
[call site]
01824
hts_tpool_size
[function]
[call site]
01825
hts_tpool_process_init
[function]
[call site]
01826
hts_tpool_process_ref_incr
[function]
[call site]
01827
pthread_mutex_lock
[call site]
01828
pthread_mutex_unlock
[call site]
01829
pool_create
[function]
[call site]
01830
pthread_mutex_init
[call site]
01831
pthread_mutex_init
[call site]
01832
pthread_mutex_init
[call site]
01833
pthread_cond_init
[call site]
01834
pthread_create
[call site]
01835
hts_get_bgzfp
[function]
[call site]
01836
bgzf_mt
[function]
[call site]
01837
hts_tpool_init
[function]
[call site]
01838
bgzf_thread_pool
[function]
[call site]
01839
hts_tpool_destroy
[function]
[call site]
01840
hts_set_opt
[function]
[call site]
01841
hts_hfile
[function]
[call site]
01842
bgzf_hfile
[function]
[call site]
01843
cram_hfile
[function]
[call site]
01844
bgzf_hfile
[function]
[call site]
01845
hfile_set_blksize
[function]
[call site]
01846
hts_log
[function]
[call site]
01847
hts_log
[function]
[call site]
01848
hts_set_thread_pool
[function]
[call site]
01849
sam_set_thread_pool
[function]
[call site]
01850
hts_get_bgzfp
[function]
[call site]
01851
bgzf_thread_pool
[function]
[call site]
01852
hts_set_opt
[function]
[call site]
01853
hts_set_cache_size
[function]
[call site]
01854
hts_get_bgzfp
[function]
[call site]
01855
bgzf_set_cache_size
[function]
[call site]
01856
fastq_state_set
[function]
[call site]
01857
fastq_state_init
[function]
[call site]
01858
strcmp
[call site]
01862
kh_init_tag
[function]
[call site]
01863
calloc
[call site]
01864
strlen
[call site]
01865
hts_log
[function]
[call site]
01866
kh_put_tag
[function]
[call site]
01867
kh_resize_tag
[function]
[call site]
01868
realloc
[call site]
01869
strncpy
[call site]
01870
strcmp
[call site]
01871
__ctype_b_loc
[call site]
01872
isalnum_c
[function]
[call site]
01873
strncpy
[call site]
01874
hts_log
[function]
[call site]
01875
regfree
[call site]
01876
regcomp
[call site]
01877
hts_log
[function]
[call site]
01878
fastq_state_set
[function]
[call site]
01879
fastq_state_set
[function]
[call site]
01880
cram_set_option
[function]
[call site]
01881
hts_set_filter_expression
[function]
[call site]
01882
hts_filter_free
[function]
[call site]
01883
regfree
[call site]
01884
hts_filter_init
[function]
[call site]
01885
cram_set_voption
[function]
[call site]
01889
hts_set_opt
[function]
[call site]
01890
hts_opt_free
[function]
[call site]
01891
hts_opt_free
[function]
[call site]
01892
hclose_abruptly
[function]
[call site]
01893
hts_log
[function]
[call site]
01894
hclose_abruptly
[function]
[call site]
01895
hclose
[function]
[call site]
01896
abort
[call site]
01897
hts_close
[function]
[call site]
01898
__errno_location
[call site]
01899
bgzf_close
[function]
[call site]
01900
cram_eof
[function]
[call site]
01901
hts_log
[function]
[call site]
01902
cram_close
[function]
[call site]
01903
cram_update_curr_slice
[function]
[call site]
01904
cram_flush_container_mt
[function]
[call site]
01905
pthread_mutex_lock
[call site]
01906
reset_metrics
[function]
[call site]
01907
pthread_mutex_unlock
[call site]
01908
hts_tpool_process_flush
[function]
[call site]
01909
pthread_mutex_lock
[call site]
01910
pthread_mutex_unlock
[call site]
01911
cram_flush_container
[function]
[call site]
01912
cram_encode_container
[function]
[call site]
01913
pthread_mutex_lock
[call site]
01914
hts_log
[function]
[call site]
01915
hts_log
[function]
[call site]
01916
pthread_mutex_unlock
[call site]
01917
pthread_mutex_lock
[call site]
01918
pthread_mutex_unlock
[call site]
01919
cram_get_ref
[function]
[call site]
01920
pthread_mutex_lock
[call site]
01921
hts_log
[function]
[call site]
01922
pthread_mutex_unlock
[call site]
01923
hts_log
[function]
[call site]
01924
pthread_mutex_unlock
[call site]
01925
hts_log
[function]
[call site]
01926
pthread_mutex_unlock
[call site]
01927
pthread_mutex_lock
[call site]
01928
hts_log
[function]
[call site]
01929
cram_populate_ref
[function]
[call site]
01930
getenv
[call site]
01931
getenv
[call site]
01932
hts_log
[function]
[call site]
01933
sam_hrecs_find_type_id
[function]
[call site]
01934
sam_hrecs_find_key
[function]
[call site]
01935
hts_log
[function]
[call site]
01936
expand_cache_path
[function]
[call site]
01937
strchr
[call site]
01938
strncpy
[call site]
01939
strlen
[call site]
01940
strcpy
[call site]
01941
strtol
[call site]
01942
strlen
[call site]
01943
strncpy
[call site]
01944
strlen
[call site]
01945
strcpy
[call site]
01946
strlen
[call site]
01947
strcpy
[call site]
01948
stat
[call site]
01949
stat
[call site]
01950
bgzf_open
[function]
[call site]
01951
string_dup
[function]
[call site]
01952
bgzf_close
[function]
[call site]
01953
open_path_mfile
[function]
[call site]
01954
getenv
[call site]
01955
tokenise_search_path
[function]
[call site]
01956
strlen
[call site]
01957
strncmp
[call site]
01958
strncmp
[call site]
01959
strncmp
[call site]
01960
strncmp
[call site]
01961
strncmp
[call site]
01962
strncmp
[call site]
01963
strncmp
[call site]
01964
strncmp
[call site]
01965
strncmp
[call site]
01966
strncmp
[call site]
01967
find_file_url
[function]
[call site]
01968
expand_path
[function]
[call site]
01969
strlen
[call site]
01970
strlen
[call site]
01971
hts_log
[function]
[call site]
01972
strchr
[call site]
01973
strtol
[call site]
01974
hopen
[function]
[call site]
01975
__errno_location
[call site]
01976
__errno_location
[call site]
01977
strerror
[call site]
01978
hts_log
[function]
[call site]
01979
mfcreate
[function]
[call site]
01980
hread
[function]
[call site]
01981
mfwrite
[function]
[call site]
01982
realloc
[call site]
01983
hclose_abruptly
[function]
[call site]
01984
hclose
[function]
[call site]
01985
__errno_location
[call site]
01986
strerror
[call site]
01987
hts_log
[function]
[call site]
01988
mrewind
[function]
[call site]
01989
mfdestroy
[function]
[call site]
01990
strncmp
[call site]
01991
hisremote
[function]
[call site]
01992
find_file_url
[function]
[call site]
01993
find_file_dir
[function]
[call site]
01994
expand_path
[function]
[call site]
01995
is_file
[function]
[call site]
01996
stat
[call site]
01997
mfopen
[function]
[call site]
01998
fopen
[call site]
01999
mfreopen
[function]
[call site]
02000
strchr
[call site]
02001
strchr
[call site]
02002
strchr
[call site]
02003
strchr
[call site]
02004
strchr
[call site]
02005
strchr
[call site]
02006
strchr
[call site]
02007
mfcreate
[function]
[call site]
02008
mfmmap
[function]
[call site]
02009
mfload
[function]
[call site]
02013
stat
[call site]
02014
realloc
[call site]
02015
fread
[call site]
02016
feof
[call site]
02017
fseek
[call site]
02018
mfcreate
[function]
[call site]
02019
hts_log
[function]
[call site]
02020
fseek
[call site]
02021
strlen
[call site]
02022
strcpy
[call site]
02023
strrchr
[call site]
02024
find_file_dir
[function]
[call site]
02025
mfsteal
[function]
[call site]
02026
mfdetach
[function]
[call site]
02027
mfflush
[function]
[call site]
02028
fclose
[call site]
02029
mfdestroy
[function]
[call site]
02030
sam_hrecs_find_key
[function]
[call site]
02031
strstr
[call site]
02032
strncmp
[call site]
02033
hts_log
[function]
[call site]
02034
strncmp
[call site]
02035
bgzf_close
[function]
[call site]
02036
refs_load_fai
[function]
[call site]
02037
sanitise_SQ_lines
[function]
[call site]
02038
bgzf_close
[function]
[call site]
02039
refs2id
[function]
[call site]
02040
expand_cache_path
[function]
[call site]
02041
hts_log
[function]
[call site]
02042
mkdir_prefix
[function]
[call site]
02043
strrchr
[call site]
02044
is_directory
[function]
[call site]
02045
stat
[call site]
02046
mkdir
[call site]
02047
chmod
[call site]
02048
mkdir_prefix
[function]
[call site]
02049
mkdir
[call site]
02050
chmod
[call site]
02051
hts_open_tmpfile
[function]
[call site]
02052
getpid
[call site]
02053
time
[call site]
02054
clock
[call site]
02055
ks_clear
[function]
[call site]
02056
ksprintf
[function]
[call site]
02057
hopen
[function]
[call site]
02058
__errno_location
[call site]
02059
perror
[call site]
02060
hts_md5_init
[function]
[call site]
02061
hts_md5_reset
[function]
[call site]
02062
hclose_abruptly
[function]
[call site]
02063
unlink
[call site]
02064
hts_md5_update
[function]
[call site]
02065
body
[function]
[call site]
02066
body
[function]
[call site]
02067
hts_md5_final
[function]
[call site]
02068
body
[function]
[call site]
02069
body
[function]
[call site]
02070
hts_md5_destroy
[function]
[call site]
02071
hts_md5_hex
[function]
[call site]
02072
strncmp
[call site]
02073
hts_log
[function]
[call site]
02074
hclose_abruptly
[function]
[call site]
02075
unlink
[call site]
02076
hwrite
[function]
[call site]
02077
hclose
[function]
[call site]
02078
chmod
[call site]
02079
rename
[call site]
02080
__errno_location
[call site]
02081
strerror
[call site]
02082
hts_log
[function]
[call site]
02083
unlink
[call site]
02084
hts_log
[function]
[call site]
02085
hts_log
[function]
[call site]
02086
pthread_mutex_unlock
[call site]
02087
pthread_mutex_unlock
[call site]
02088
cram_ref_incr_locked
[function]
[call site]
02089
cram_ref_incr_locked
[function]
[call site]
02090
cram_ref_load
[function]
[call site]
02091
__assert_fail
[call site]
02092
__assert_fail
[call site]
02093
ref_entry_free_seq
[function]
[call site]
02094
strcmp
[call site]
02095
bgzf_close
[function]
[call site]
02096
bgzf_open_ref
[function]
[call site]
02097
load_ref_portion
[function]
[call site]
02098
bgzf_useek
[function]
[call site]
02099
hseek
[function]
[call site]
02100
bgzf_read_block
[function]
[call site]
02101
bgzf_seek_common
[function]
[call site]
02102
pthread_mutex_lock
[call site]
02103
pthread_cond_signal
[call site]
02104
hts_tpool_wake_dispatch
[function]
[call site]
02105
pthread_cond_wait
[call site]
02106
pthread_cond_signal
[call site]
02107
abort
[call site]
02108
__errno_location
[call site]
02109
pthread_mutex_unlock
[call site]
02110
pthread_mutex_unlock
[call site]
02111
hseek
[function]
[call site]
02112
bgzf_read_block
[function]
[call site]
02113
__assert_fail
[call site]
02114
perror
[call site]
02115
bgzf_read
[function]
[call site]
02116
__assert_fail
[call site]
02117
bgzf_read_block
[function]
[call site]
02118
hts_log
[function]
[call site]
02119
bgzf_htell
[function]
[call site]
02120
hts_log
[function]
[call site]
02121
bgzf_htell
[function]
[call site]
02122
perror
[call site]
02123
isspace_c
[function]
[call site]
02124
isspace_c
[function]
[call site]
02125
isspace_c
[function]
[call site]
02126
hts_log
[function]
[call site]
02127
toupper_c
[function]
[call site]
02128
toupper
[call site]
02129
pthread_mutex_unlock
[call site]
02130
pthread_mutex_unlock
[call site]
02131
cram_ref_incr_locked
[function]
[call site]
02132
pthread_mutex_unlock
[call site]
02133
pthread_mutex_unlock
[call site]
02134
pthread_mutex_unlock
[call site]
02135
pthread_mutex_unlock
[call site]
02136
strcmp
[call site]
02137
bgzf_close
[function]
[call site]
02138
bgzf_open_ref
[function]
[call site]
02139
pthread_mutex_unlock
[call site]
02140
pthread_mutex_unlock
[call site]
02141
load_ref_portion
[function]
[call site]
02142
pthread_mutex_unlock
[call site]
02143
pthread_mutex_unlock
[call site]
02144
pthread_mutex_unlock
[call site]
02145
pthread_mutex_unlock
[call site]
02146
hts_log
[function]
[call site]
02147
hts_log
[function]
[call site]
02148
pthread_mutex_lock
[call site]
02149
pthread_mutex_unlock
[call site]
02150
hts_log
[function]
[call site]
02151
hts_log
[function]
[call site]
02152
hts_log
[function]
[call site]
02153
hts_log
[function]
[call site]
02154
pthread_mutex_lock
[call site]
02155
validate_md5
[function]
[call site]
02156
sam_hrecs_find_type_id
[function]
[call site]
02157
sam_hrecs_find_key
[function]
[call site]
02158
hts_md5_init
[function]
[call site]
02159
hts_md5_update
[function]
[call site]
02160
hts_md5_final
[function]
[call site]
02161
hts_md5_destroy
[function]
[call site]
02162
hts_md5_hex
[function]
[call site]
02163
strcmp
[call site]
02164
hts_log
[function]
[call site]
02165
hts_log
[function]
[call site]
02166
cram_ref_incr
[function]
[call site]
02167
pthread_mutex_lock
[call site]
02168
cram_ref_incr_locked
[function]
[call site]
02169
pthread_mutex_unlock
[call site]
02170
cram_get_ref
[function]
[call site]
02171
validate_md5
[function]
[call site]
02172
hts_log
[function]
[call site]
02173
__assert_fail
[call site]
02174
lossy_read_names
[function]
[call site]
02175
kh_init_m_s2u64
[function]
[call site]
02176
calloc
[call site]
02177
expected_template_count
[function]
[call site]
02178
bam_aux_get
[function]
[call site]
02179
bam_aux_first
[function]
[call site]
02180
__errno_location
[call site]
02181
skip_aux
[function]
[call site]
02182
aux_type2size
[function]
[call site]
02183
memchr
[call site]
02184
aux_type2size
[function]
[call site]
02185
le_to_u32
[function]
[call site]
02186
bam_aux_next
[function]
[call site]
02187
skip_aux
[function]
[call site]
02188
__errno_location
[call site]
02189
hts_log
[function]
[call site]
02190
__errno_location
[call site]
02191
hts_log
[function]
[call site]
02192
__errno_location
[call site]
02193
bam_data_end
[function]
[call site]
02194
bam_aux2i_end
[function]
[call site]
02195
__errno_location
[call site]
02196
__errno_location
[call site]
02197
__errno_location
[call site]
02198
le_to_i16
[function]
[call site]
02199
le_to_u16
[function]
[call site]
02200
__errno_location
[call site]
02201
le_to_u16
[function]
[call site]
02202
__errno_location
[call site]
02203
le_to_i32
[function]
[call site]
02204
le_to_u32
[function]
[call site]
02205
__errno_location
[call site]
02206
le_to_u32
[function]
[call site]
02207
__errno_location
[call site]
02208
bam_aux_get
[function]
[call site]
02209
kh_put_m_s2u64
[function]
[call site]
02210
kh_resize_m_s2u64
[function]
[call site]
02211
realloc
[call site]
02212
__ac_FNV1a_hash_string
[function]
[call site]
02213
strcmp
[call site]
02214
kh_get_m_s2u64
[function]
[call site]
02215
kh_destroy_m_s2u64
[function]
[call site]
02216
cram_generate_reference
[function]
[call site]
02217
extend_ref
[function]
[call site]
02218
realloc
[call site]
02219
realloc
[call site]
02220
hts_log
[function]
[call site]
02221
cram_add_to_ref
[function]
[call site]
02222
bam_aux_get
[function]
[call site]
02223
cram_add_to_ref_MD
[function]
[call site]
02224
bam_cigar2rlen
[function]
[call site]
02225
extend_ref
[function]
[call site]
02226
__ctype_b_loc
[call site]
02227
hts_str2uint
[function]
[call site]
02228
extend_ref
[function]
[call site]
02229
next_cigar_op
[function]
[call site]
02230
hts_log
[function]
[call site]
02231
__ctype_b_loc
[call site]
02232
extend_ref
[function]
[call site]
02233
next_cigar_op
[function]
[call site]
02234
hts_log
[function]
[call site]
02235
extend_ref
[function]
[call site]
02236
next_cigar_op
[function]
[call site]
02237
extend_ref
[function]
[call site]
02238
hts_log
[function]
[call site]
02239
hts_log
[function]
[call site]
02240
pthread_mutex_lock
[call site]
02241
pthread_mutex_unlock
[call site]
02242
pthread_mutex_lock
[call site]
02243
pthread_mutex_unlock
[call site]
02244
cram_ref_decr
[function]
[call site]
02245
pthread_mutex_lock
[call site]
02246
cram_ref_decr_locked
[function]
[call site]
02247
__assert_fail
[call site]
02248
ref_entry_free_seq
[function]
[call site]
02249
pthread_mutex_unlock
[call site]
02250
cram_get_ref
[function]
[call site]
02251
hts_log
[function]
[call site]
02252
validate_md5
[function]
[call site]
02253
process_one_read
[function]
[call site]
02254
bam_aux_get
[function]
[call site]
02255
bam_aux_get
[function]
[call site]
02256
cram_stats_add
[function]
[call site]
02257
kh_init_m_i2i
[function]
[call site]
02258
calloc
[call site]
02259
kh_put_m_i2i
[function]
[call site]
02260
kh_resize_m_i2i
[function]
[call site]
02261
realloc
[call site]
02262
cram_stats_add
[function]
[call site]
02263
cram_stats_add
[function]
[call site]
02264
block_grow
[function]
[call site]
02265
block_resize
[function]
[call site]
02266
block_resize_exact
[function]
[call site]
02267
realloc
[call site]
02268
block_grow
[function]
[call site]
02269
nibble2base
[function]
[call site]
02270
hts_log
[function]
[call site]
02271
realloc
[call site]
02272
hts_log
[function]
[call site]
02273
kputuw
[function]
[call site]
02274
ks_resize
[function]
[call site]
02275
ks_resize
[function]
[call site]
02276
kputc
[function]
[call site]
02277
ks_resize
[function]
[call site]
02278
cram_add_substitution
[function]
[call site]
02279
cram_stats_add
[function]
[call site]
02280
cram_stats_add
[function]
[call site]
02281
cram_stats_add
[function]
[call site]
02282
block_append_char
[function]
[call site]
02283
block_grow
[function]
[call site]
02284
cram_add_feature
[function]
[call site]
02285
realloc
[call site]
02286
cram_stats_add
[function]
[call site]
02287
cram_stats_add
[function]
[call site]
02288
cram_stats_add
[function]
[call site]
02289
cram_add_bases
[function]
[call site]
02290
cram_add_feature
[function]
[call site]
02291
cram_add_base
[function]
[call site]
02292
cram_stats_add
[function]
[call site]
02293
cram_stats_add
[function]
[call site]
02294
block_append_char
[function]
[call site]
02295
cram_add_feature
[function]
[call site]
02296
cram_add_base
[function]
[call site]
02297
kputuw
[function]
[call site]
02298
kputc_
[function]
[call site]
02299
ks_resize
[function]
[call site]
02300
kputsn
[function]
[call site]
02301
ks_resize
[function]
[call site]
02302
cram_add_deletion
[function]
[call site]
02303
cram_stats_add
[function]
[call site]
02304
cram_add_feature
[function]
[call site]
02305
cram_add_skip
[function]
[call site]
02306
cram_stats_add
[function]
[call site]
02307
cram_add_feature
[function]
[call site]
02308
cram_add_insertion
[function]
[call site]
02309
cram_stats_add
[function]
[call site]
02310
block_append
[function]
[call site]
02311
block_grow
[function]
[call site]
02312
block_append_char
[function]
[call site]
02313
block_append_char
[function]
[call site]
02314
cram_add_feature
[function]
[call site]
02315
cram_add_quality
[function]
[call site]
02316
cram_stats_add
[function]
[call site]
02317
block_append_char
[function]
[call site]
02318
cram_add_feature
[function]
[call site]
02319
cram_add_softclip
[function]
[call site]
02320
block_append
[function]
[call site]
02321
block_append_char
[function]
[call site]
02322
block_append
[function]
[call site]
02323
block_append_char
[function]
[call site]
02324
block_append_char
[function]
[call site]
02325
cram_add_feature
[function]
[call site]
02326
cram_add_quality
[function]
[call site]
02327
cram_add_quality
[function]
[call site]
02328
cram_add_hardclip
[function]
[call site]
02329
cram_stats_add
[function]
[call site]
02330
cram_add_feature
[function]
[call site]
02331
cram_add_pad
[function]
[call site]
02332
cram_stats_add
[function]
[call site]
02333
cram_add_feature
[function]
[call site]
02334
hts_log
[function]
[call site]
02335
hts_log
[function]
[call site]
02336
cram_stats_add
[function]
[call site]
02337
kputuw
[function]
[call site]
02338
cram_stats_add
[function]
[call site]
02339
cram_encode_aux
[function]
[call site]
02340
bam_data_end
[function]
[call site]
02341
hts_log
[function]
[call site]
02342
sam_hrecs_find_rg
[function]
[call site]
02343
kh_get_m_s2i
[function]
[call site]
02344
block_append
[function]
[call site]
02345
hts_log
[function]
[call site]
02346
strncasecmp
[call site]
02347
hts_log
[function]
[call site]
02348
block_append
[function]
[call site]
02349
bam_aux2i_end
[function]
[call site]
02350
hts_log
[function]
[call site]
02351
block_append
[function]
[call site]
02352
block_append
[function]
[call site]
02353
kh_put_m_tagmap
[function]
[call site]
02354
kh_resize_m_tagmap
[function]
[call site]
02355
realloc
[call site]
02356
pthread_mutex_lock
[call site]
02357
kh_put_m_metrics
[function]
[call site]
02358
kh_resize_m_metrics
[function]
[call site]
02359
realloc
[call site]
02360
pthread_mutex_unlock
[call site]
02361
cram_new_metrics
[function]
[call site]
02362
kh_del_m_metrics
[function]
[call site]
02363
pthread_mutex_unlock
[call site]
02364
pthread_mutex_unlock
[call site]
02365
calloc
[call site]
02366
cram_encoder_init
[function]
[call site]
02367
cram_encoding2str
[function]
[call site]
02368
hts_log
[function]
[call site]
02369
cram_encoding2str
[function]
[call site]
02370
hts_log
[function]
[call site]
02371
abort
[call site]
02372
cram_stats_add
[function]
[call site]
02373
cram_stats_encoding
[function]
[call site]
02374
realloc
[call site]
02375
realloc
[call site]
02376
realloc
[call site]
02377
realloc
[call site]
02378
__assert_fail
[call site]
02379
cram_encoder_init
[function]
[call site]
02380
cram_stats_add
[function]
[call site]
02381
cram_stats_encoding
[function]
[call site]
02382
cram_encoder_init
[function]
[call site]
02383
cram_stats_add
[function]
[call site]
02384
cram_stats_encoding
[function]
[call site]
02385
cram_encoder_init
[function]
[call site]
02386
cram_encoder_init
[function]
[call site]
02387
hts_log
[function]
[call site]
02388
pthread_mutex_lock
[call site]
02389
pthread_mutex_unlock
[call site]
02390
cram_new_block
[function]
[call site]
02391
block_append_char
[function]
[call site]
02392
cram_new_block
[function]
[call site]
02393
block_append
[function]
[call site]
02394
cram_new_block
[function]
[call site]
02395
block_append
[function]
[call site]
02396
cram_new_block
[function]
[call site]
02397
block_append
[function]
[call site]
02398
cram_new_block
[function]
[call site]
02399
hts_log
[function]
[call site]
02400
cram_new_block
[function]
[call site]
02401
cram_new_block
[function]
[call site]
02402
hts_log
[function]
[call site]
02403
hts_log
[function]
[call site]
02404
block_append_char
[function]
[call site]
02405
string_ndup
[function]
[call site]
02406
kh_put_m_s2i
[function]
[call site]
02407
kh_resize_m_s2i
[function]
[call site]
02408
__ac_FNV1a_hash_string
[function]
[call site]
02409
cram_stats_add
[function]
[call site]
02410
sam_hrecs_find_rg
[function]
[call site]
02411
cram_stats_add
[function]
[call site]
02412
block_grow
[function]
[call site]
02413
block_grow
[function]
[call site]
02414
cram_stats_add
[function]
[call site]
02415
string_ndup
[function]
[call site]
02416
kh_put_m_s2i
[function]
[call site]
02417
cram_stats_add
[function]
[call site]
02418
cram_stats_add
[function]
[call site]
02419
cram_stats_del
[function]
[call site]
02420
__assert_fail
[call site]
02421
kh_get_m_i2i
[function]
[call site]
02422
kh_del_m_i2i
[function]
[call site]
02423
hts_log
[function]
[call site]
02424
hts_log
[function]
[call site]
02425
cram_stats_del
[function]
[call site]
02426
cram_stats_del
[function]
[call site]
02427
cram_stats_del
[function]
[call site]
02428
cram_stats_add
[function]
[call site]
02429
cram_stats_del
[function]
[call site]
02430
cram_stats_add
[function]
[call site]
02431
cram_stats_add
[function]
[call site]
02432
cram_stats_add
[function]
[call site]
02433
cram_stats_add
[function]
[call site]
02434
cram_stats_add
[function]
[call site]
02435
cram_stats_add
[function]
[call site]
02436
cram_stats_add
[function]
[call site]
02437
cram_stats_add
[function]
[call site]
02438
add_read_names
[function]
[call site]
02439
block_append
[function]
[call site]
02440
block_append
[function]
[call site]
02441
cram_stats_add
[function]
[call site]
02442
calloc
[call site]
02443
__assert_fail
[call site]
02444
cram_ref_decr
[function]
[call site]
02445
pthread_mutex_lock
[call site]
02446
pthread_mutex_unlock
[call site]
02447
cram_stats_encoding
[function]
[call site]
02448
pthread_mutex_lock
[call site]
02449
pthread_mutex_unlock
[call site]
02450
hts_log
[function]
[call site]
02451
hts_md5_init
[function]
[call site]
02452
hts_md5_update
[function]
[call site]
02453
hts_md5_final
[function]
[call site]
02454
hts_md5_destroy
[function]
[call site]
02455
cram_stats_encoding
[function]
[call site]
02456
cram_encoder_init
[function]
[call site]
02457
cram_stats_encoding
[function]
[call site]
02458
cram_encoder_init
[function]
[call site]
02459
cram_stats_encoding
[function]
[call site]
02460
cram_encoder_init
[function]
[call site]
02461
cram_encoder_init
[function]
[call site]
02462
cram_encoder_init
[function]
[call site]
02463
cram_stats_encoding
[function]
[call site]
02464
cram_encoder_init
[function]
[call site]
02465
cram_stats_encoding
[function]
[call site]
02466
cram_encoder_init
[function]
[call site]
02467
cram_stats_encoding
[function]
[call site]
02468
cram_encoder_init
[function]
[call site]
02469
cram_stats_encoding
[function]
[call site]
02470
cram_encoder_init
[function]
[call site]
02471
cram_stats_encoding
[function]
[call site]
02472
cram_encoder_init
[function]
[call site]
02473
cram_stats_encoding
[function]
[call site]
02474
cram_encoder_init
[function]
[call site]
02475
cram_stats_encoding
[function]
[call site]
02476
cram_encoder_init
[function]
[call site]
02477
cram_stats_encoding
[function]
[call site]
02478
cram_encoder_init
[function]
[call site]
02479
cram_stats_encoding
[function]
[call site]
02480
cram_encoder_init
[function]
[call site]
02481
cram_stats_encoding
[function]
[call site]
02482
cram_encoder_init
[function]
[call site]
02483
cram_stats_encoding
[function]
[call site]
02484
cram_encoder_init
[function]
[call site]
02485
cram_stats_encoding
[function]
[call site]
02486
cram_encoder_init
[function]
[call site]
02487
cram_stats_encoding
[function]
[call site]
02488
cram_encoder_init
[function]
[call site]
02489
cram_encoder_init
[function]
[call site]
02490
cram_stats_encoding
[function]
[call site]
02491
cram_encoder_init
[function]
[call site]
02492
cram_stats_encoding
[function]
[call site]
02493
cram_encoder_init
[function]
[call site]
02494
cram_stats_encoding
[function]
[call site]
02495
cram_encoder_init
[function]
[call site]
02496
cram_stats_encoding
[function]
[call site]
02497
cram_encoder_init
[function]
[call site]
02498
cram_stats_encoding
[function]
[call site]
02499
cram_encoder_init
[function]
[call site]
02500
cram_stats_encoding
[function]
[call site]
02501
cram_encoder_init
[function]
[call site]
02502
cram_stats_encoding
[function]
[call site]
02503
cram_encoder_init
[function]
[call site]
02504
cram_stats_encoding
[function]
[call site]
02505
cram_encoder_init
[function]
[call site]
02506
cram_encoder_init
[function]
[call site]
02507
cram_encoder_init
[function]
[call site]
02508
cram_encoder_init
[function]
[call site]
02509
cram_encoder_init
[function]
[call site]
02510
hts_log
[function]
[call site]
02511
cram_encode_slice
[function]
[call site]
02512
calloc
[call site]
02513
cram_new_block
[function]
[call site]
02514
cram_new_block
[function]
[call site]
02515
cram_new_block
[function]
[call site]
02516
block_append
[function]
[call site]
02517
cram_allocate_block
[function]
[call site]
02518
cram_new_block
[function]
[call site]
02519
cram_new_block
[function]
[call site]
02520
cram_allocate_block
[function]
[call site]
02521
cram_allocate_block
[function]
[call site]
02522
cram_allocate_block
[function]
[call site]
02523
cram_allocate_block
[function]
[call site]
02524
cram_allocate_block
[function]
[call site]
02525
cram_new_block
[function]
[call site]
02526
cram_allocate_block
[function]
[call site]
02527
cram_new_block
[function]
[call site]
02528
cram_encode_slice_read
[function]
[call site]
02529
hts_log
[function]
[call site]
02530
cram_free_block
[function]
[call site]
02531
cram_free_block
[function]
[call site]
02532
cram_free_block
[function]
[call site]
02533
cram_free_block
[function]
[call site]
02534
cram_compress_slice
[function]
[call site]
02535
cram_compress_block2
[function]
[call site]
02536
cram_compress_block3
[function]
[call site]
02537
pthread_mutex_lock
[call site]
02538
pthread_mutex_unlock
[call site]
02539
cram_compress_by_method
[function]
[call site]
02540
zlib_mem_deflate
[function]
[call site]
02541
deflateInit2_
[call site]
02542
hts_log
[function]
[call site]
02543
hts_log
[function]
[call site]
02544
deflate
[call site]
02545
hts_log
[function]
[call site]
02546
deflate
[call site]
02547
hts_log
[function]
[call site]
02548
deflateEnd
[call site]
02549
hts_log
[function]
[call site]
02550
BZ2_bzBuffToBuffCompress
[call site]
02551
fqz_compress
[function]
[call site]
02552
compress_block_fqz2f
[function]
[call site]
02553
fqz_pick_parameters
[function]
[call site]
02554
calloc
[call site]
02555
fqz_qual_stats
[function]
[call site]
02556
calloc
[call site]
02557
memcmp
[call site]
02558
fast_log
[function]
[call site]
02559
fast_log
[function]
[call site]
02560
fast_log
[function]
[call site]
02561
fast_log
[function]
[call site]
02562
fast_log
[function]
[call site]
02563
fast_log
[function]
[call site]
02564
fast_log
[function]
[call site]
02565
log
[call site]
02566
log
[call site]
02567
log
[call site]
02568
log
[call site]
02569
log
[call site]
02570
log
[call site]
02571
log
[call site]
02572
log
[call site]
02573
log
[call site]
02574
var_put_u32
[function]
[call site]
02575
var_put_u32_safe
[function]
[call site]
02576
fqz_store_parameters
[function]
[call site]
02577
store_array
[function]
[call site]
02578
fqz_store_parameters1
[function]
[call site]
02579
store_array
[function]
[call site]
02580
store_array
[function]
[call site]
02581
store_array
[function]
[call site]
02582
fqz_create_models
[function]
[call site]
02583
RC_SetOutput
[function]
[call site]
02584
RC_SetOutputEnd
[function]
[call site]
02585
RC_StartEncode
[function]
[call site]
02586
compress_new_read
[function]
[call site]
02587
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02588
RC_Encode
[function]
[call site]
02589
RC_ShiftLowCheck
[function]
[call site]
02590
SIMPLE_MODEL256_normalize
[function]
[call site]
02591
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02592
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02593
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02594
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02595
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02596
SIMPLE_MODEL2_normalize
[function]
[call site]
02597
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02598
memcmp
[call site]
02599
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02600
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02601
mm_prefetch
[function]
[call site]
02602
fqz_update_ctx
[function]
[call site]
02603
mm_prefetch
[function]
[call site]
02604
fqz_update_ctx
[function]
[call site]
02605
mm_prefetch
[function]
[call site]
02606
fqz_update_ctx
[function]
[call site]
02607
mm_prefetch
[function]
[call site]
02608
fqz_update_ctx
[function]
[call site]
02609
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02610
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02611
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02612
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02613
mm_prefetch
[function]
[call site]
02614
fqz_update_ctx
[function]
[call site]
02615
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02616
RC_FinishEncode
[function]
[call site]
02617
RC_ShiftLowCheck
[function]
[call site]
02618
RC_OutSize
[function]
[call site]
02619
fqz_destroy_models
[function]
[call site]
02620
fqz_free_parameters
[function]
[call site]
02621
lzma_mem_deflate
[function]
[call site]
02622
lzma_stream_buffer_bound
[call site]
02623
lzma_easy_buffer_encode
[call site]
02624
rans_compress
[function]
[call site]
02625
rans_compress_O1
[function]
[call site]
02626
rans_compress_O0
[function]
[call site]
02627
hist8
[function]
[call site]
02628
htscodecs_tls_calloc
[function]
[call site]
02629
htscodecs_tls_free
[function]
[call site]
02630
__assert_fail
[call site]
02631
RansEncSymbolInit
[function]
[call site]
02632
__assert_fail
[call site]
02633
__assert_fail
[call site]
02634
RansEncInit
[function]
[call site]
02635
RansEncInit
[function]
[call site]
02636
RansEncInit
[function]
[call site]
02637
RansEncInit
[function]
[call site]
02638
RansEncPutSymbol
[function]
[call site]
02639
__assert_fail
[call site]
02640
RansEncPutSymbol
[function]
[call site]
02641
RansEncPutSymbol
[function]
[call site]
02642
RansEncPutSymbol
[function]
[call site]
02643
RansEncPutSymbol
[function]
[call site]
02644
RansEncPutSymbol
[function]
[call site]
02645
RansEncPutSymbol
[function]
[call site]
02646
RansEncFlush
[function]
[call site]
02647
RansEncFlush
[function]
[call site]
02648
RansEncFlush
[function]
[call site]
02649
RansEncFlush
[function]
[call site]
02650
htscodecs_tls_alloc
[function]
[call site]
02651
hist1_4
[function]
[call site]
02652
htscodecs_tls_calloc
[function]
[call site]
02653
htscodecs_tls_free
[function]
[call site]
02654
RansEncSymbolInit
[function]
[call site]
02655
__assert_fail
[call site]
02656
RansEncInit
[function]
[call site]
02657
RansEncInit
[function]
[call site]
02658
RansEncInit
[function]
[call site]
02659
RansEncInit
[function]
[call site]
02660
RansEncPutSymbol
[function]
[call site]
02661
RansEncPutSymbol4
[function]
[call site]
02662
__assert_fail
[call site]
02663
__assert_fail
[call site]
02664
__assert_fail
[call site]
02665
__assert_fail
[call site]
02666
RansEncPutSymbol
[function]
[call site]
02667
RansEncPutSymbol
[function]
[call site]
02668
RansEncPutSymbol
[function]
[call site]
02669
RansEncPutSymbol
[function]
[call site]
02670
RansEncFlush
[function]
[call site]
02671
RansEncFlush
[function]
[call site]
02672
RansEncFlush
[function]
[call site]
02673
RansEncFlush
[function]
[call site]
02674
htscodecs_tls_free
[function]
[call site]
02675
rans_compress_O0
[function]
[call site]
02676
rans_compress_4x16
[function]
[call site]
02677
rans_compress_to_4x16
[function]
[call site]
02678
rans_compress_bound_4x16
[function]
[call site]
02679
var_put_u32
[function]
[call site]
02680
rans_compress_to_4x16
[function]
[call site]
02681
realloc
[call site]
02682
var_put_u32
[function]
[call site]
02683
var_put_u32
[function]
[call site]
02684
var_put_u32
[function]
[call site]
02685
hts_pack
[function]
[call site]
02686
var_put_u32
[function]
[call site]
02687
hts_rle_encode
[function]
[call site]
02688
rle_find_syms
[function]
[call site]
02689
var_put_u32
[function]
[call site]
02690
var_put_u32
[function]
[call site]
02691
var_put_u32
[function]
[call site]
02692
rans_enc_func
[function]
[call site]
02693
pthread_once
[call site]
02694
htscodecs_tls_cpu_init
[function]
[call site]
02695
strerror
[call site]
02696
fprintf
[call site]
02697
fprintf
[call site]
02698
var_put_u32
[function]
[call site]
02699
var_put_u32
[function]
[call site]
02700
var_put_u32
[function]
[call site]
02701
rans_enc_func
[function]
[call site]
02702
arith_compress_to
[function]
[call site]
02703
arith_compress_bound
[function]
[call site]
02704
var_put_u32
[function]
[call site]
02705
var_put_u32
[function]
[call site]
02706
arith_compress_to
[function]
[call site]
02707
arith_compress_to
[function]
[call site]
02708
var_put_u32
[function]
[call site]
02709
var_put_u32
[function]
[call site]
02710
hts_pack
[function]
[call site]
02711
var_put_u32
[function]
[call site]
02712
BZ2_bzBuffToBuffCompress
[call site]
02713
arith_compress_O0_RLE
[function]
[call site]
02714
arith_compress_bound
[function]
[call site]
02715
SIMPLE_MODEL256_init
[function]
[call site]
02716
htscodecs_tls_alloc
[function]
[call site]
02717
SIMPLE_MODEL258_init
[function]
[call site]
02718
RC_SetOutput
[function]
[call site]
02719
RC_SetOutputEnd
[function]
[call site]
02720
RC_StartEncode
[function]
[call site]
02721
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02722
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02723
SIMPLE_MODEL258_normalize
[function]
[call site]
02724
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02725
RC_FinishEncode
[function]
[call site]
02726
htscodecs_tls_free
[function]
[call site]
02727
RC_OutSize
[function]
[call site]
02728
htscodecs_tls_free
[function]
[call site]
02729
arith_compress_O1_RLE
[function]
[call site]
02730
arith_compress_bound
[function]
[call site]
02731
htscodecs_tls_alloc
[function]
[call site]
02732
SIMPLE_MODEL256_init
[function]
[call site]
02733
htscodecs_tls_alloc
[function]
[call site]
02734
htscodecs_tls_free
[function]
[call site]
02735
SIMPLE_MODEL258_init
[function]
[call site]
02736
RC_SetOutput
[function]
[call site]
02737
RC_SetOutputEnd
[function]
[call site]
02738
RC_StartEncode
[function]
[call site]
02739
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02740
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02741
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02742
RC_FinishEncode
[function]
[call site]
02743
htscodecs_tls_free
[function]
[call site]
02744
htscodecs_tls_free
[function]
[call site]
02745
RC_OutSize
[function]
[call site]
02746
htscodecs_tls_free
[function]
[call site]
02747
htscodecs_tls_free
[function]
[call site]
02748
arith_compress_O1
[function]
[call site]
02749
arith_compress_bound
[function]
[call site]
02750
htscodecs_tls_alloc
[function]
[call site]
02751
SIMPLE_MODEL256_init
[function]
[call site]
02752
RC_SetOutput
[function]
[call site]
02753
RC_SetOutputEnd
[function]
[call site]
02754
RC_StartEncode
[function]
[call site]
02755
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02756
RC_FinishEncode
[function]
[call site]
02757
htscodecs_tls_free
[function]
[call site]
02758
RC_OutSize
[function]
[call site]
02759
htscodecs_tls_free
[function]
[call site]
02760
arith_compress_O0
[function]
[call site]
02761
arith_compress_bound
[function]
[call site]
02762
SIMPLE_MODEL256_init
[function]
[call site]
02763
RC_SetOutput
[function]
[call site]
02764
RC_SetOutputEnd
[function]
[call site]
02765
RC_StartEncode
[function]
[call site]
02766
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02767
RC_FinishEncode
[function]
[call site]
02768
RC_OutSize
[function]
[call site]
02769
tok3_encode_names
[function]
[call site]
02770
create_context
[function]
[call site]
02771
build_trie
[function]
[call site]
02772
calloc
[call site]
02773
pool_create
[function]
[call site]
02774
pool_alloc
[function]
[call site]
02775
new_pool
[function]
[call site]
02776
free_context
[function]
[call site]
02777
free_context
[function]
[call site]
02778
encode_name
[function]
[call site]
02779
search_trie
[function]
[call site]
02780
__ctype_b_loc
[call site]
02781
__ctype_b_loc
[call site]
02782
__ctype_b_loc
[call site]
02783
__ctype_b_loc
[call site]
02784
__ctype_b_loc
[call site]
02785
calloc
[call site]
02786
__ctype_b_loc
[call site]
02787
strlen
[call site]
02788
encode_token_dup
[function]
[call site]
02789
encode_token_int
[function]
[call site]
02790
encode_token_type
[function]
[call site]
02791
descriptor_grow
[function]
[call site]
02792
realloc
[call site]
02793
descriptor_grow
[function]
[call site]
02794
encode_token_diff
[function]
[call site]
02795
encode_token_int
[function]
[call site]
02796
encode_token_char
[function]
[call site]
02797
encode_token_type
[function]
[call site]
02798
descriptor_grow
[function]
[call site]
02799
memcmp
[call site]
02800
encode_token_match
[function]
[call site]
02801
encode_token_type
[function]
[call site]
02802
encode_token_alpha
[function]
[call site]
02803
encode_token_type
[function]
[call site]
02804
descriptor_grow
[function]
[call site]
02805
encode_token_alpha
[function]
[call site]
02806
__ctype_b_loc
[call site]
02807
__ctype_b_loc
[call site]
02808
__ctype_b_loc
[call site]
02809
memcmp
[call site]
02810
encode_token_match
[function]
[call site]
02811
encode_token_alpha
[function]
[call site]
02812
encode_token_alpha
[function]
[call site]
02813
__ctype_b_loc
[call site]
02814
encode_token_match
[function]
[call site]
02815
encode_token_int1
[function]
[call site]
02816
encode_token_type
[function]
[call site]
02817
descriptor_grow
[function]
[call site]
02818
encode_token_int1_
[function]
[call site]
02819
descriptor_grow
[function]
[call site]
02820
encode_token_int
[function]
[call site]
02821
encode_token_int1_
[function]
[call site]
02822
encode_token_int
[function]
[call site]
02823
__ctype_b_loc
[call site]
02824
__ctype_b_loc
[call site]
02825
encode_token_match
[function]
[call site]
02826
encode_token_int1
[function]
[call site]
02827
encode_token_int
[function]
[call site]
02828
encode_token_int
[function]
[call site]
02829
encode_token_match
[function]
[call site]
02830
encode_token_char
[function]
[call site]
02831
encode_token_char
[function]
[call site]
02832
encode_token_end
[function]
[call site]
02833
encode_token_type
[function]
[call site]
02834
realloc
[call site]
02835
free_context
[function]
[call site]
02836
arith_compress_bound
[function]
[call site]
02837
free_context
[function]
[call site]
02838
compress
[function]
[call site]
02839
arith_encode
[function]
[call site]
02840
arith_compress_to
[function]
[call site]
02841
var_put_u32
[function]
[call site]
02842
rans_encode
[function]
[call site]
02843
rans_compress_to_4x16
[function]
[call site]
02844
var_put_u32
[function]
[call site]
02845
free_context
[function]
[call site]
02846
memcmp
[call site]
02847
free_context
[function]
[call site]
02848
free_context
[function]
[call site]
02849
pthread_mutex_lock
[call site]
02850
pthread_mutex_unlock
[call site]
02851
pthread_mutex_unlock
[call site]
02852
cram_compress_by_method
[function]
[call site]
02853
cram_block_method2str
[function]
[call site]
02854
hts_log
[function]
[call site]
02855
pthread_mutex_lock
[call site]
02856
pthread_mutex_unlock
[call site]
02857
cram_compress_block3
[function]
[call site]
02858
cram_compress_by_method
[function]
[call site]
02859
hts_log
[function]
[call site]
02860
cram_block_method2str
[function]
[call site]
02861
hts_log
[function]
[call site]
02862
pthread_mutex_lock
[call site]
02863
pthread_mutex_unlock
[call site]
02864
cram_compress_block2
[function]
[call site]
02865
cram_compress_block2
[function]
[call site]
02866
cram_compress_block2
[function]
[call site]
02867
cram_compress_block2
[function]
[call site]
02868
cram_compress_block2
[function]
[call site]
02869
cram_compress_block2
[function]
[call site]
02870
cram_compress_block2
[function]
[call site]
02871
cram_compress_block2
[function]
[call site]
02872
cram_compress_block2
[function]
[call site]
02873
cram_compress_block2
[function]
[call site]
02874
cram_compress_block2
[function]
[call site]
02875
cram_compress_block2
[function]
[call site]
02876
cram_compress_block2
[function]
[call site]
02877
cram_compress_block2
[function]
[call site]
02878
cram_compress_block2
[function]
[call site]
02879
realloc
[call site]
02880
cram_free_block
[function]
[call site]
02881
cram_encode_slice_header
[function]
[call site]
02882
cram_new_block
[function]
[call site]
02883
cram_free_block
[function]
[call site]
02884
cram_free_block
[function]
[call site]
02885
__assert_fail
[call site]
02886
cram_encode_compression_header
[function]
[call site]
02887
cram_new_block
[function]
[call site]
02888
cram_new_block
[function]
[call site]
02889
itf8_put_blk
[function]
[call site]
02890
itf8_put
[function]
[call site]
02891
block_append
[function]
[call site]
02892
itf8_put_blk
[function]
[call site]
02893
itf8_put_blk
[function]
[call site]
02894
itf8_put_blk
[function]
[call site]
02895
itf8_put_blk
[function]
[call site]
02896
itf8_put_blk
[function]
[call site]
02897
kh_destroy_map
[function]
[call site]
02898
kh_init_map
[function]
[call site]
02899
calloc
[call site]
02900
kh_put_map
[function]
[call site]
02901
kh_resize_map
[function]
[call site]
02902
realloc
[call site]
02903
__ac_FNV1a_hash_string
[function]
[call site]
02904
strcmp
[call site]
02905
kh_put_map
[function]
[call site]
02906
kh_put_map
[function]
[call site]
02907
kh_put_map
[function]
[call site]
02908
kh_put_map
[function]
[call site]
02909
kh_put_map
[function]
[call site]
02910
kh_put_map
[function]
[call site]
02911
kh_put_map
[function]
[call site]
02912
kh_put_map
[function]
[call site]
02913
block_append
[function]
[call site]
02914
block_append_char
[function]
[call site]
02915
sub_idx
[function]
[call site]
02916
sub_idx
[function]
[call site]
02917
sub_idx
[function]
[call site]
02918
sub_idx
[function]
[call site]
02919
sub_idx
[function]
[call site]
02920
sub_idx
[function]
[call site]
02921
sub_idx
[function]
[call site]
02922
sub_idx
[function]
[call site]
02923
sub_idx
[function]
[call site]
02924
sub_idx
[function]
[call site]
02925
sub_idx
[function]
[call site]
02926
sub_idx
[function]
[call site]
02927
sub_idx
[function]
[call site]
02928
sub_idx
[function]
[call site]
02929
sub_idx
[function]
[call site]
02930
sub_idx
[function]
[call site]
02931
sub_idx
[function]
[call site]
02932
sub_idx
[function]
[call site]
02933
sub_idx
[function]
[call site]
02934
sub_idx
[function]
[call site]
02935
block_append
[function]
[call site]
02936
block_append
[function]
[call site]
02937
hts_log
[function]
[call site]
02938
block_append
[function]
[call site]
02939
block_append
[function]
[call site]
02940
block_append
[function]
[call site]
02941
hts_log
[function]
[call site]
02942
cram_free_block
[function]
[call site]
02943
cram_ref_decr
[function]
[call site]
02944
cram_ref_decr
[function]
[call site]
02945
cram_flush_container2
[function]
[call site]
02946
htell
[function]
[call site]
02947
cram_write_container
[function]
[call site]
02948
itf8_put
[function]
[call site]
02949
crc32
[call site]
02950
hwrite
[function]
[call site]
02951
htell
[function]
[call site]
02952
cram_write_block
[function]
[call site]
02953
__assert_fail
[call site]
02954
hputc
[function]
[call site]
02955
hputc2
[function]
[call site]
02956
flush_buffer
[function]
[call site]
02957
hputc
[function]
[call site]
02958
hwrite
[function]
[call site]
02959
hwrite
[function]
[call site]
02960
hwrite
[function]
[call site]
02961
crc32
[call site]
02962
crc32
[call site]
02963
crc32
[call site]
02964
int32_encode
[function]
[call site]
02965
hwrite
[function]
[call site]
02966
htell
[function]
[call site]
02967
cram_write_block
[function]
[call site]
02968
cram_write_block
[function]
[call site]
02969
htell
[function]
[call site]
02970
cram_index_slice
[function]
[call site]
02971
hts_log
[function]
[call site]
02972
cram_index_build_multiref
[function]
[call site]
02973
cram_decode_slice
[function]
[call site]
02974
cram_dependent_data_series
[function]
[call site]
02975
cram_uncompress_block
[function]
[call site]
02976
cram_uncompress_block
[function]
[call site]
02977
calloc
[call site]
02978
cram_codec_to_id
[function]
[call site]
02979
cram_codec_to_id
[function]
[call site]
02980
cram_codec_to_id
[function]
[call site]
02981
hts_log
[function]
[call site]
02982
cram_uncompress_block
[function]
[call site]
02983
cram_codec_to_id
[function]
[call site]
02984
cram_uncompress_block
[function]
[call site]
02985
cram_codec_to_id
[function]
[call site]
02986
cram_codec_to_id
[function]
[call site]
02987
block_resize_exact
[function]
[call site]
02988
block_resize_exact
[function]
[call site]
02989
block_resize_exact
[function]
[call site]
02990
strcmp
[call site]
02991
hts_log
[function]
[call site]
02992
cram_get_block_by_id
[function]
[call site]
02993
cram_uncompress_block
[function]
[call site]
02994
hts_log
[function]
[call site]
02995
cram_get_ref
[function]
[call site]
02996
hts_log
[function]
[call site]
02997
pthread_mutex_lock
[call site]
02998
pthread_mutex_lock
[call site]
02999
pthread_mutex_unlock
[call site]
03000
pthread_mutex_unlock
[call site]
03001
hts_log
[function]
[call site]
03002
memcmp
[call site]
03003
hts_log
[function]
[call site]
03004
hts_log
[function]
[call site]
03005
hts_md5_init
[function]
[call site]
03006
hts_md5_update
[function]
[call site]
03007
hts_md5_final
[function]
[call site]
03008
hts_md5_destroy
[function]
[call site]
03009
cram_get_block_by_id
[function]
[call site]
03010
hts_md5_init
[function]
[call site]
03011
hts_md5_update
[function]
[call site]
03012
hts_md5_final
[function]
[call site]
03013
hts_md5_destroy
[function]
[call site]
03014
memcmp
[call site]
03015
sam_hdr_tid2name
[function]
[call site]
03016
hts_log
[function]
[call site]
03017
md5_print
[function]
[call site]
03018
hts_log
[function]
[call site]
03019
md5_print
[function]
[call site]
03020
hts_log
[function]
[call site]
03021
sam_hdr_find_tag_id
[function]
[call site]
03022
sam_hdr_fill_hrecs
[function]
[call site]
03023
sam_hrecs_find_type_id
[function]
[call site]
03024
sam_hrecs_find_key
[function]
[call site]
03025
kputsn
[function]
[call site]
03026
hts_log
[function]
[call site]
03027
hts_log
[function]
[call site]
03028
ks_free
[function]
[call site]
03029
ks_initialize
[function]
[call site]
03030
pthread_mutex_lock
[call site]
03031
pthread_mutex_lock
[call site]
03032
calloc
[call site]
03033
pthread_mutex_unlock
[call site]
03034
pthread_mutex_unlock
[call site]
03035
pthread_mutex_lock
[call site]
03036
pthread_mutex_unlock
[call site]
03037
cram_get_ref
[function]
[call site]
03038
pthread_mutex_lock
[call site]
03039
pthread_mutex_unlock
[call site]
03040
pthread_mutex_lock
[call site]
03041
pthread_mutex_unlock
[call site]
03042
cram_ref_decr
[function]
[call site]
03043
pthread_mutex_lock
[call site]
03044
pthread_mutex_lock
[call site]
03045
pthread_mutex_unlock
[call site]
03046
pthread_mutex_unlock
[call site]
03047
hts_log
[function]
[call site]
03048
hts_log
[function]
[call site]
03049
pthread_mutex_lock
[call site]
03050
pthread_mutex_unlock
[call site]
03051
cram_decode_tlen
[function]
[call site]
03052
cram_decode_tlen
[function]
[call site]
03053
cram_decode_tlen
[function]
[call site]
03054
cram_decode_aux_1_0
[function]
[call site]
03055
map_find
[function]
[call site]
03056
block_append
[function]
[call site]
03057
cram_decode_aux
[function]
[call site]
03058
strlen
[call site]
03059
sam_hdr_line_name
[function]
[call site]
03060
sam_hdr_fill_hrecs
[function]
[call site]
03061
hts_log
[function]
[call site]
03062
hts_log
[function]
[call site]
03063
hts_log
[function]
[call site]
03064
hts_log
[function]
[call site]
03065
strlen
[call site]
03066
block_append
[function]
[call site]
03067
block_append
[function]
[call site]
03068
block_append_char
[function]
[call site]
03069
block_append
[function]
[call site]
03070
map_find
[function]
[call site]
03071
block_append
[function]
[call site]
03072
hts_log
[function]
[call site]
03073
block_resize
[function]
[call site]
03074
block_resize
[function]
[call site]
03075
hts_log
[function]
[call site]
03076
cram_decode_seq
[function]
[call site]
03077
block_append
[function]
[call site]
03078
realloc
[call site]
03079
hts_log
[function]
[call site]
03080
memchr
[call site]
03081
add_md_char
[function]
[call site]
03082
block_append_uint
[function]
[call site]
03083
block_grow
[function]
[call site]
03084
append_uint32
[function]
[call site]
03085
block_append_char
[function]
[call site]
03086
block_append_uint
[function]
[call site]
03087
add_md_char
[function]
[call site]
03088
block_append_uint
[function]
[call site]
03089
block_append_char
[function]
[call site]
03090
block_append
[function]
[call site]
03091
block_append_char
[function]
[call site]
03092
block_append
[function]
[call site]
03093
block_append_uint
[function]
[call site]
03094
block_append_uint
[function]
[call site]
03095
block_append_uint
[function]
[call site]
03096
block_append_char
[function]
[call site]
03097
block_append_uint
[function]
[call site]
03098
block_append_char
[function]
[call site]
03099
hts_log
[function]
[call site]
03100
hts_log
[function]
[call site]
03101
memchr
[call site]
03102
add_md_char
[function]
[call site]
03103
realloc
[call site]
03104
block_append_uint
[function]
[call site]
03105
realloc
[call site]
03106
block_append_char
[function]
[call site]
03107
block_append
[function]
[call site]
03108
hts_log
[function]
[call site]
03109
pthread_mutex_lock
[call site]
03110
cram_ref_decr
[function]
[call site]
03111
cram_ref_decr
[function]
[call site]
03112
pthread_mutex_unlock
[call site]
03113
cram_decode_slice_xref
[function]
[call site]
03114
hts_log
[function]
[call site]
03115
cram_free_block
[function]
[call site]
03116
block_resize_exact
[function]
[call site]
03117
block_resize_exact
[function]
[call site]
03118
block_resize_exact
[function]
[call site]
03119
block_resize_exact
[function]
[call site]
03120
pthread_mutex_lock
[call site]
03121
cram_ref_decr
[function]
[call site]
03122
pthread_mutex_unlock
[call site]
03123
hts_log
[function]
[call site]
03124
snprintf
[call site]
03125
strlen
[call site]
03126
bgzf_write
[function]
[call site]
03127
hwrite
[function]
[call site]
03128
__assert_fail
[call site]
03129
lazy_flush
[function]
[call site]
03130
mt_queue
[function]
[call site]
03131
bgzf_flush
[function]
[call site]
03132
snprintf
[call site]
03133
strlen
[call site]
03134
bgzf_write
[function]
[call site]
03135
snprintf
[call site]
03136
strlen
[call site]
03137
bgzf_write
[function]
[call site]
03138
__errno_location
[call site]
03139
hts_tpool_dispatch2
[function]
[call site]
03140
hts_tpool_dispatch3
[function]
[call site]
03141
cram_flush_thread
[function]
[call site]
03142
cram_encode_container
[function]
[call site]
03143
hts_log
[function]
[call site]
03144
__errno_location
[call site]
03145
cram_flush_result
[function]
[call site]
03146
hts_tpool_next_result
[function]
[call site]
03147
pthread_mutex_lock
[call site]
03148
hts_tpool_next_result_locked
[function]
[call site]
03149
pthread_mutex_unlock
[call site]
03150
hts_tpool_result_data
[function]
[call site]
03151
hts_tpool_delete_result
[function]
[call site]
03152
cram_flush_container2
[function]
[call site]
03153
cram_free_slice
[function]
[call site]
03154
cram_free_slice
[function]
[call site]
03155
cram_free_container
[function]
[call site]
03156
hts_tpool_delete_result
[function]
[call site]
03157
cram_free_container
[function]
[call site]
03158
hts_usleep
[function]
[call site]
03159
cram_drain_rqueue
[function]
[call site]
03160
hts_tpool_process_flush
[function]
[call site]
03161
cram_flush_result
[function]
[call site]
03162
hts_tpool_process_destroy
[function]
[call site]
03163
pthread_mutex_destroy
[call site]
03164
pthread_mutex_destroy
[call site]
03165
pthread_mutex_destroy
[call site]
03166
pthread_mutex_destroy
[call site]
03167
cram_write_eof_block
[function]
[call site]
03168
cram_encode_compression_header
[function]
[call site]
03169
cram_write_container
[function]
[call site]
03170
cram_write_block
[function]
[call site]
03171
cram_close
[function]
[call site]
03172
free_bam_list
[function]
[call site]
03173
hclose
[function]
[call site]
03174
cram_free_file_def
[function]
[call site]
03175
sam_hdr_destroy
[function]
[call site]
03176
cram_free_container
[function]
[call site]
03177
cram_free_container
[function]
[call site]
03178
refs_free
[function]
[call site]
03179
kh_destroy_m_metrics
[function]
[call site]
03180
cram_index_free
[function]
[call site]
03181
cram_index_free_recurse
[function]
[call site]
03182
cram_index_free_recurse
[function]
[call site]
03183
hts_tpool_destroy
[function]
[call site]
03184
bgzf_close
[function]
[call site]
03185
cram_free_block
[function]
[call site]
03186
kh_destroy_map
[function]
[call site]
03187
cram_free_block
[function]
[call site]
03188
sam_state_destroy
[function]
[call site]
03189
fastq_state_destroy
[function]
[call site]
03190
kh_destroy_tag
[function]
[call site]
03191
ks_free
[function]
[call site]
03192
ks_initialize
[function]
[call site]
03193
ks_free
[function]
[call site]
03194
ks_free
[function]
[call site]
03195
regfree
[call site]
03196
bgzf_close
[function]
[call site]
03197
hclose
[function]
[call site]
03198
hts_idx_close_otf_fp
[function]
[call site]
03199
need_idx_ugly_delay_hack
[function]
[call site]
03200
idx_write_uint64
[function]
[call site]
03201
ed_is_big
[function]
[call site]
03202
ed_swap_8
[function]
[call site]
03203
bgzf_write
[function]
[call site]
03204
bgzf_close
[function]
[call site]
03205
__errno_location
[call site]
03206
sam_hdr_destroy
[function]
[call site]
03207
hts_idx_destroy
[function]
[call site]
03208
cram_index_free
[function]
[call site]
03209
kh_destroy_bin
[function]
[call site]
03210
hts_filter_free
[function]
[call site]
03211
__errno_location
[call site]
03212
view_sam
[function]
[call site]
03213
abort
[call site]
03214
hopen
[function]
[call site]
03215
hts_hopen
[function]
[call site]
03216
hclose
[function]
[call site]
03217
abort
[call site]
03218
hts_open
[function]
[call site]
03219
hts_open_format
[function]
[call site]
03220
strncpy
[call site]
03221
strchr
[call site]
03222
strchr
[call site]
03223
strchr
[call site]
03224
strstr
[call site]
03225
strdup
[call site]
03226
hopen
[function]
[call site]
03227
hts_hopen
[function]
[call site]
03228
hts_opt_apply
[function]
[call site]
03229
__errno_location
[call site]
03230
__errno_location
[call site]
03231
__errno_location
[call site]
03232
__errno_location
[call site]
03233
strerror
[call site]
03234
hts_log
[function]
[call site]
03235
hclose_abruptly
[function]
[call site]
03236
abort
[call site]
03237
sam_hdr_read
[function]
[call site]
03238
__errno_location
[call site]
03239
bam_hdr_read
[function]
[call site]
03240
bgzf_check_EOF
[function]
[call site]
03241
pthread_mutex_lock
[call site]
03242
pthread_cond_signal
[call site]
03243
hts_tpool_wake_dispatch
[function]
[call site]
03244
pthread_mutex_unlock
[call site]
03245
pthread_cond_wait
[call site]
03246
pthread_cond_signal
[call site]
03247
abort
[call site]
03248
pthread_mutex_unlock
[call site]
03249
bgzf_check_EOF_common
[function]
[call site]
03250
htell
[function]
[call site]
03251
hseek
[function]
[call site]
03252
__errno_location
[call site]
03253
hclearerr
[function]
[call site]
03254
__errno_location
[call site]
03255
hclearerr
[function]
[call site]
03256
hread
[function]
[call site]
03257
hseek
[function]
[call site]
03258
memcmp
[call site]
03259
perror
[call site]
03260
hts_log
[function]
[call site]
03261
bgzf_read
[function]
[call site]
03262
memcmp
[call site]
03263
hts_log
[function]
[call site]
03264
sam_hdr_init
[function]
[call site]
03265
bgzf_read
[function]
[call site]
03266
le_to_u32
[function]
[call site]
03267
bgzf_read
[function]
[call site]
03268
bgzf_read
[function]
[call site]
03269
ed_swap_4p
[function]
[call site]
03270
ed_swap_4
[function]
[call site]
03271
calloc
[call site]
03272
calloc
[call site]
03273
bgzf_read
[function]
[call site]
03274
ed_swap_4p
[function]
[call site]
03275
bgzf_read
[function]
[call site]
03276
realloc
[call site]
03277
bgzf_read
[function]
[call site]
03278
ed_swap_4p
[function]
[call site]
03279
hts_log
[function]
[call site]
03280
hts_log
[function]
[call site]
03281
hts_log
[function]
[call site]
03282
sam_hdr_destroy
[function]
[call site]
03283
sam_hdr_sanitise
[function]
[call site]
03284
hts_log
[function]
[call site]
03285
sam_hdr_destroy
[function]
[call site]
03286
hts_log
[function]
[call site]
03287
hts_log
[function]
[call site]
03288
hts_log
[function]
[call site]
03289
sam_hdr_destroy
[function]
[call site]
03290
realloc
[call site]
03291
sam_hdr_destroy
[function]
[call site]
03292
sam_hdr_dup
[function]
[call site]
03293
sam_hdr_init
[function]
[call site]
03294
calloc
[call site]
03295
calloc
[call site]
03296
strdup
[call site]
03297
sam_hdr_dup_sdict
[function]
[call site]
03298
kh_init_s2i
[function]
[call site]
03299
kh_get_s2i
[function]
[call site]
03300
kh_put_s2i
[function]
[call site]
03301
kh_destroy_s2i
[function]
[call site]
03302
sam_hrecs_rebuild_text
[function]
[call site]
03303
kputsn
[function]
[call site]
03304
sam_hrecs_rebuild_lines
[function]
[call site]
03305
kputsn
[function]
[call site]
03306
build_header_line
[function]
[call site]
03307
kputc_
[function]
[call site]
03308
kputsn
[function]
[call site]
03309
kputc_
[function]
[call site]
03310
kputsn
[function]
[call site]
03311
kputc
[function]
[call site]
03312
ks_release
[function]
[call site]
03313
ks_release
[function]
[call site]
03314
sam_hdr_update_target_arrays
[function]
[call site]
03315
sam_hdr_destroy
[function]
[call site]
03316
sam_hdr_sanitise
[function]
[call site]
03317
sam_hdr_create
[function]
[call site]
03318
sam_hdr_init
[function]
[call site]
03319
sam_hdr_build_from_sam_file
[function]
[call site]
03320
sam_hrecs_new
[function]
[call site]
03321
hts_getline
[function]
[call site]
03322
hts_log
[function]
[call site]
03323
abort
[call site]
03324
kgetline2
[function]
[call site]
03325
ks_resize
[function]
[call site]
03326
hgetln
[function]
[call site]
03327
herrno
[function]
[call site]
03328
__errno_location
[call site]
03329
bgzf_getline
[function]
[call site]
03330
bgzf_read_block
[function]
[call site]
03331
memchr
[call site]
03332
ks_expand
[function]
[call site]
03333
bgzf_htell
[function]
[call site]
03334
abort
[call site]
03335
isalpha_c
[function]
[call site]
03336
sam_hrecs_error
[function]
[call site]
03337
strncmp
[call site]
03338
kputc
[function]
[call site]
03339
valid_sam_header_type
[function]
[call site]
03340
hts_log
[function]
[call site]
03341
warn_if_known_stderr
[function]
[call site]
03342
sam_hrecs_parse_single_line
[function]
[call site]
03343
TYPEKEY
[function]
[call site]
03344
kputsn
[function]
[call site]
03345
kputc
[function]
[call site]
03346
bgzf_peek
[function]
[call site]
03347
bgzf_read_block
[function]
[call site]
03348
hts_log
[function]
[call site]
03349
hpeek
[function]
[call site]
03350
strstr
[call site]
03351
hopen
[function]
[call site]
03352
kgetline
[function]
[call site]
03353
strlen
[call site]
03354
hgets
[function]
[call site]
03355
strchr
[call site]
03356
strtoll
[call site]
03357
kputs
[function]
[call site]
03358
kputsn
[function]
[call site]
03359
kputs
[function]
[call site]
03360
kputll
[function]
[call site]
03361
kputc
[function]
[call site]
03362
sam_hrecs_parse_single_line
[function]
[call site]
03363
ks_free
[function]
[call site]
03364
hclose
[function]
[call site]
03365
hts_log
[function]
[call site]
03366
kh_grow_to_fit_m_s2i
[function]
[call site]
03367
realloc
[call site]
03368
sam_hrecs_update_hashes
[function]
[call site]
03369
kputsn
[function]
[call site]
03370
ks_release
[function]
[call site]
03371
sam_hdr_update_target_arrays
[function]
[call site]
03372
ks_free
[function]
[call site]
03373
sam_hdr_destroy
[function]
[call site]
03374
sam_hdr_destroy
[function]
[call site]
03375
sam_hdr_sanitise
[function]
[call site]
03376
sam_hdr_init
[function]
[call site]
03377
__errno_location
[call site]
03378
__errno_location
[call site]
03379
sam_hdr_incr_ref
[function]
[call site]
03380
hts_close_or_abort
[function]
[call site]
03381
hts_close
[function]
[call site]
03382
abort
[call site]
03383
hts_close
[function]
[call site]
03384
hts_close
[function]
[call site]
03385
sam_hdr_count_lines
[function]
[call site]
03386
sam_hdr_fill_hrecs
[function]
[call site]
03387
sam_hrecs_find_type_id
[function]
[call site]
03388
sam_hdr_write
[function]
[call site]
03389
__errno_location
[call site]
03390
bam_hdr_write
[function]
[call site]
03391
sam_hrecs_rebuild_text
[function]
[call site]
03392
hts_log
[function]
[call site]
03393
hts_log
[function]
[call site]
03394
hts_log
[function]
[call site]
03395
hts_log
[function]
[call site]
03396
hts_log
[function]
[call site]
03397
hts_log
[function]
[call site]
03398
bgzf_write
[function]
[call site]
03399
ed_swap_4
[function]
[call site]
03400
bgzf_write
[function]
[call site]
03401
bgzf_write
[function]
[call site]
03402
ed_swap_4
[function]
[call site]
03403
bgzf_write
[function]
[call site]
03404
bgzf_write
[function]
[call site]
03405
bgzf_write
[function]
[call site]
03406
bgzf_write
[function]
[call site]
03407
strlen
[call site]
03408
ed_swap_4
[function]
[call site]
03409
bgzf_write
[function]
[call site]
03410
bgzf_write
[function]
[call site]
03411
bgzf_write
[function]
[call site]
03412
ed_swap_4
[function]
[call site]
03413
bgzf_write
[function]
[call site]
03414
bgzf_write
[function]
[call site]
03415
bgzf_flush
[function]
[call site]
03416
cram_set_header2
[function]
[call site]
03417
sam_hdr_destroy
[function]
[call site]
03418
sam_hdr_dup
[function]
[call site]
03419
refs_from_header
[function]
[call site]
03420
cram_load_reference
[function]
[call site]
03421
cram_write_SAM_hdr
[function]
[call site]
03422
cram_write_file_def
[function]
[call site]
03423
hwrite
[function]
[call site]
03424
sam_hrecs_find_rg
[function]
[call site]
03425
sam_hdr_add_line
[function]
[call site]
03426
sam_hdr_fill_hrecs
[function]
[call site]
03427
sam_hrecs_vadd
[function]
[call site]
03428
rebuild_target_arrays
[function]
[call site]
03429
redact_header_text
[function]
[call site]
03430
refs_from_header
[function]
[call site]
03431
refs2id
[function]
[call site]
03432
sam_hrecs_find_type_id
[function]
[call site]
03433
sam_hrecs_find_key
[function]
[call site]
03434
cram_get_ref
[function]
[call site]
03435
hts_log
[function]
[call site]
03436
hts_log
[function]
[call site]
03437
hts_log
[function]
[call site]
03438
pthread_mutex_lock
[call site]
03439
pthread_mutex_unlock
[call site]
03440
hts_md5_init
[function]
[call site]
03441
hts_md5_update
[function]
[call site]
03442
hts_md5_final
[function]
[call site]
03443
hts_md5_destroy
[function]
[call site]
03444
cram_ref_decr
[function]
[call site]
03445
hts_md5_hex
[function]
[call site]
03446
sam_hdr_update_line
[function]
[call site]
03447
sam_hdr_fill_hrecs
[function]
[call site]
03448
sam_hrecs_find_type_id
[function]
[call site]
03449
check_for_name_update
[function]
[call site]
03450
TYPEKEY
[function]
[call site]
03451
TYPEKEY
[function]
[call site]
03452
TYPEKEY
[function]
[call site]
03453
sam_hrecs_find_key
[function]
[call site]
03454
__assert_fail
[call site]
03455
strcmp
[call site]
03456
strcmp
[call site]
03457
kh_get_m_s2i
[function]
[call site]
03458
hts_log
[function]
[call site]
03459
TYPEKEY
[function]
[call site]
03460
hts_log
[function]
[call site]
03461
sam_hrecs_vupdate
[function]
[call site]
03462
kh_get_m_s2i
[function]
[call site]
03463
sam_hrecs_find_key
[function]
[call site]
03464
__assert_fail
[call site]
03465
__assert_fail
[call site]
03466
__assert_fail
[call site]
03467
kh_del_m_s2i
[function]
[call site]
03468
kh_put_m_s2i
[function]
[call site]
03469
hts_log
[function]
[call site]
03470
TYPEKEY
[function]
[call site]
03471
sam_hrecs_update_hashes
[function]
[call site]
03472
rebuild_target_arrays
[function]
[call site]
03473
redact_header_text
[function]
[call site]
03474
full_path
[function]
[call site]
03475
strlen
[call site]
03476
hisremote
[function]
[call site]
03477
hts_log
[function]
[call site]
03478
strncpy
[call site]
03479
toupper_c
[function]
[call site]
03480
strncpy
[call site]
03481
getcwd
[call site]
03482
strlen
[call site]
03483
strncpy
[call site]
03484
snprintf
[call site]
03485
sam_hdr_update_line
[function]
[call site]
03486
sam_hdr_length
[function]
[call site]
03487
sam_hdr_rebuild
[function]
[call site]
03488
rebuild_target_arrays
[function]
[call site]
03489
hts_log
[function]
[call site]
03490
sam_hdr_link_pg
[function]
[call site]
03491
sam_hdr_fill_hrecs
[function]
[call site]
03492
realloc
[call site]
03493
calloc
[call site]
03494
__assert_fail
[call site]
03495
kh_get_m_s2i
[function]
[call site]
03496
hts_log
[function]
[call site]
03497
redact_header_text
[function]
[call site]
03498
hts_log
[function]
[call site]
03499
sam_hrecs_rebuild_text
[function]
[call site]
03500
ks_free
[function]
[call site]
03501
hts_log
[function]
[call site]
03502
ks_len
[function]
[call site]
03503
ks_release
[function]
[call site]
03504
hts_log
[function]
[call site]
03505
int32_encode
[function]
[call site]
03506
sam_hdr_str
[function]
[call site]
03507
sam_hdr_rebuild
[function]
[call site]
03508
hwrite
[function]
[call site]
03509
cram_new_block
[function]
[call site]
03510
cram_new_container
[function]
[call site]
03511
calloc
[call site]
03512
calloc
[call site]
03513
cram_new_compression_header
[function]
[call site]
03514
calloc
[call site]
03515
cram_new_block
[function]
[call site]
03516
kh_init_m_s2i
[function]
[call site]
03517
cram_free_block
[function]
[call site]
03518
string_pool_create
[function]
[call site]
03519
kh_destroy_m_s2i
[function]
[call site]
03520
cram_free_block
[function]
[call site]
03521
cram_stats_create
[function]
[call site]
03522
calloc
[call site]
03523
kh_init_m_tagmap
[function]
[call site]
03524
calloc
[call site]
03525
cram_free_block
[function]
[call site]
03526
cram_free_container
[function]
[call site]
03527
int32_put_blk
[function]
[call site]
03528
block_append
[function]
[call site]
03529
sam_hdr_str
[function]
[call site]
03530
block_append
[function]
[call site]
03531
cram_compress_block
[function]
[call site]
03532
cram_compress_block2
[function]
[call site]
03533
cram_free_block
[function]
[call site]
03534
cram_free_container
[function]
[call site]
03535
calloc
[call site]
03536
cram_free_block
[function]
[call site]
03537
cram_free_container
[function]
[call site]
03538
block_append
[function]
[call site]
03539
cram_write_container
[function]
[call site]
03540
cram_free_block
[function]
[call site]
03541
cram_free_container
[function]
[call site]
03542
cram_write_block
[function]
[call site]
03543
cram_free_block
[function]
[call site]
03544
cram_free_container
[function]
[call site]
03545
block_resize
[function]
[call site]
03546
cram_write_block
[function]
[call site]
03547
cram_free_block
[function]
[call site]
03548
cram_free_container
[function]
[call site]
03549
cram_free_block
[function]
[call site]
03550
cram_free_container
[function]
[call site]
03551
hflush
[function]
[call site]
03552
sam_hrecs_rebuild_text
[function]
[call site]
03553
strstr
[call site]
03554
bgzf_write
[function]
[call site]
03555
hwrite
[function]
[call site]
03556
kputsn
[function]
[call site]
03557
kputs
[function]
[call site]
03558
kputsn
[function]
[call site]
03559
kputw
[function]
[call site]
03560
kputc
[function]
[call site]
03561
bgzf_write
[function]
[call site]
03562
hwrite
[function]
[call site]
03563
bgzf_flush
[function]
[call site]
03564
hflush
[function]
[call site]
03565
__errno_location
[call site]
03566
sam_hdr_dup
[function]
[call site]
03567
sam_hdr_destroy
[function]
[call site]
03568
bam_init1
[function]
[call site]
03569
sam_read1
[function]
[call site]
03570
sam_read1_bam
[function]
[call site]
03571
bam_read1
[function]
[call site]
03572
bgzf_read_small
[function]
[call site]
03573
bgzf_read
[function]
[call site]
03574
ed_swap_4p
[function]
[call site]
03575
bgzf_read
[function]
[call site]
03576
le_to_u32
[function]
[call site]
03577
le_to_i32
[function]
[call site]
03578
le_to_u32
[function]
[call site]
03579
le_to_u32
[function]
[call site]
03580
le_to_u32
[function]
[call site]
03581
le_to_i32
[function]
[call site]
03582
le_to_i32
[function]
[call site]
03583
realloc_bam_data
[function]
[call site]
03584
sam_realloc_bam_data
[function]
[call site]
03585
__errno_location
[call site]
03586
__errno_location
[call site]
03587
bam_get_mempolicy
[function]
[call site]
03588
realloc
[call site]
03589
bam_get_mempolicy
[function]
[call site]
03590
bam_set_mempolicy
[function]
[call site]
03591
bgzf_read_small
[function]
[call site]
03592
fixup_missing_qname_nul
[function]
[call site]
03593
realloc_bam_data
[function]
[call site]
03594
bgzf_read_small
[function]
[call site]
03595
swap_data
[function]
[call site]
03596
ed_swap_4p
[function]
[call site]
03597
bam_tag2cigar
[function]
[call site]
03598
bam_aux_get
[function]
[call site]
03599
__errno_location
[call site]
03600
__errno_location
[call site]
03601
__errno_location
[call site]
03602
le_to_u32
[function]
[call site]
03603
possibly_expand_bam_data
[function]
[call site]
03604
__errno_location
[call site]
03605
sam_realloc_bam_data
[function]
[call site]
03606
bam_endpos
[function]
[call site]
03607
bam_cigar2rlen
[function]
[call site]
03608
hts_reg2bin
[function]
[call site]
03609
hts_log
[function]
[call site]
03610
bam_cigar2rqlens
[function]
[call site]
03611
hts_reg2bin
[function]
[call site]
03612
hts_log
[function]
[call site]
03613
__errno_location
[call site]
03614
sam_read1_cram
[function]
[call site]
03615
cram_get_bam_seq
[function]
[call site]
03616
cram_get_seq
[function]
[call site]
03617
cram_next_slice
[function]
[call site]
03618
cram_first_slice
[function]
[call site]
03619
cram_free_container
[function]
[call site]
03620
cram_read_container
[function]
[call site]
03621
cram_seek
[function]
[call site]
03622
cram_free_container
[function]
[call site]
03623
cram_read_container
[function]
[call site]
03624
cram_read_block
[function]
[call site]
03625
cram_decode_compression_header
[function]
[call site]
03626
calloc
[call site]
03627
cram_uncompress_block
[function]
[call site]
03628
kh_init_map
[function]
[call site]
03629
cram_free_compression_header
[function]
[call site]
03630
cram_free_compression_header
[function]
[call site]
03631
kh_put_map
[function]
[call site]
03632
cram_free_compression_header
[function]
[call site]
03633
kh_put_map
[function]
[call site]
03634
cram_free_compression_header
[function]
[call site]
03635
kh_put_map
[function]
[call site]
03636
cram_free_compression_header
[function]
[call site]
03637
kh_put_map
[function]
[call site]
03638
cram_free_compression_header
[function]
[call site]
03639
cram_free_compression_header
[function]
[call site]
03640
kh_put_map
[function]
[call site]
03641
cram_free_compression_header
[function]
[call site]
03642
cram_decode_TD
[function]
[call site]
03643
cram_new_block
[function]
[call site]
03644
hts_log
[function]
[call site]
03645
cram_free_block
[function]
[call site]
03646
cram_free_block
[function]
[call site]
03647
cram_free_block
[function]
[call site]
03648
block_append
[function]
[call site]
03649
block_append_char
[function]
[call site]
03650
calloc
[call site]
03651
cram_free_block
[function]
[call site]
03652
cram_free_block
[function]
[call site]
03653
cram_free_compression_header
[function]
[call site]
03654
kh_put_map
[function]
[call site]
03655
cram_free_compression_header
[function]
[call site]
03656
hts_log
[function]
[call site]
03657
cram_free_compression_header
[function]
[call site]
03658
cram_free_compression_header
[function]
[call site]
03659
cram_free_compression_header
[function]
[call site]
03660
hts_log
[function]
[call site]
03661
hts_log
[function]
[call site]
03662
cram_decoder_init
[function]
[call site]
03663
cram_encoding2str
[function]
[call site]
03664
hts_log
[function]
[call site]
03665
cram_free_compression_header
[function]
[call site]
03666
cram_free_compression_header
[function]
[call site]
03667
cram_free_compression_header
[function]
[call site]
03668
cram_free_compression_header
[function]
[call site]
03669
cram_decoder_init
[function]
[call site]
03670
cram_free_compression_header
[function]
[call site]
03671
cram_free_compression_header
[function]
[call site]
03672
sam_hrecs_sort_order
[function]
[call site]
03673
TYPEKEY
[function]
[call site]
03674
kh_get_sam_hrecs_t
[function]
[call site]
03675
strcmp
[call site]
03676
strcmp
[call site]
03677
strcmp
[call site]
03678
strcmp
[call site]
03679
hts_log
[function]
[call site]
03680
pthread_mutex_lock
[call site]
03681
pthread_mutex_unlock
[call site]
03682
cram_free_slice
[function]
[call site]
03683
cram_free_container
[function]
[call site]
03684
cram_read_container
[function]
[call site]
03685
cram_free_container
[function]
[call site]
03686
cram_free_container
[function]
[call site]
03687
cram_free_container
[function]
[call site]
03688
cram_seek
[function]
[call site]
03689
cram_free_container
[function]
[call site]
03690
cram_read_block
[function]
[call site]
03691
cram_decode_compression_header
[function]
[call site]
03692
sam_hrecs_sort_order
[function]
[call site]
03693
pthread_mutex_lock
[call site]
03694
pthread_mutex_unlock
[call site]
03695
cram_free_container
[function]
[call site]
03696
cram_read_slice
[function]
[call site]
03697
cram_read_block
[function]
[call site]
03698
calloc
[call site]
03699
cram_decode_slice_header
[function]
[call site]
03700
cram_uncompress_block
[function]
[call site]
03701
calloc
[call site]
03702
hts_log
[function]
[call site]
03703
cram_content_type2str
[function]
[call site]
03704
hts_log
[function]
[call site]
03705
hts_log
[function]
[call site]
03706
calloc
[call site]
03707
cram_read_block
[function]
[call site]
03708
calloc
[call site]
03709
cram_new_block
[function]
[call site]
03710
cram_new_block
[function]
[call site]
03711
cram_new_block
[function]
[call site]
03712
cram_new_block
[function]
[call site]
03713
cram_new_block
[function]
[call site]
03714
cram_new_block
[function]
[call site]
03715
cram_free_block
[function]
[call site]
03716
cram_free_slice
[function]
[call site]
03717
cram_free_slice
[function]
[call site]
03718
cram_free_slice
[function]
[call site]
03719
cram_free_slice
[function]
[call site]
03720
cram_decode_slice_mt
[function]
[call site]
03721
cram_decode_slice
[function]
[call site]
03722
hts_tpool_process_sz
[function]
[call site]
03723
pthread_mutex_lock
[call site]
03724
pthread_mutex_unlock
[call site]
03725
__errno_location
[call site]
03726
__errno_location
[call site]
03727
hts_tpool_dispatch2
[function]
[call site]
03728
cram_decode_slice_thread
[function]
[call site]
03729
cram_decode_slice
[function]
[call site]
03730
__errno_location
[call site]
03731
__errno_location
[call site]
03732
hts_log
[function]
[call site]
03733
cram_free_slice
[function]
[call site]
03734
hts_tpool_process_len
[function]
[call site]
03735
pthread_mutex_lock
[call site]
03736
pthread_mutex_unlock
[call site]
03737
hts_tpool_process_qsize
[function]
[call site]
03738
hts_tpool_process_empty
[function]
[call site]
03739
hts_tpool_next_result_wait
[function]
[call site]
03740
hts_tpool_result_data
[function]
[call site]
03741
hts_log
[function]
[call site]
03742
hts_tpool_result_data
[function]
[call site]
03743
hts_log
[function]
[call site]
03744
hts_tpool_delete_result
[function]
[call site]
03745
hts_tpool_delete_result
[function]
[call site]
03746
cram_free_slice
[function]
[call site]
03747
cram_free_slice
[function]
[call site]
03748
cram_to_bam
[function]
[call site]
03749
strlen
[call site]
03750
append_uint64
[function]
[call site]
03751
append_uint32
[function]
[call site]
03752
append_uint32
[function]
[call site]
03753
append_sub32
[function]
[call site]
03754
append_uint32
[function]
[call site]
03755
append_sub32
[function]
[call site]
03756
append_uint64
[function]
[call site]
03757
bam_set1
[function]
[call site]
03758
bam_cigar2rqlens
[function]
[call site]
03759
hts_log
[function]
[call site]
03760
__errno_location
[call site]
03761
hts_log
[function]
[call site]
03762
__errno_location
[call site]
03763
hts_log
[function]
[call site]
03764
__errno_location
[call site]
03765
hts_log
[function]
[call site]
03766
__errno_location
[call site]
03767
subtract_check_underflow
[function]
[call site]
03768
subtract_check_underflow
[function]
[call site]
03769
subtract_check_underflow
[function]
[call site]
03770
subtract_check_underflow
[function]
[call site]
03771
subtract_check_underflow
[function]
[call site]
03772
hts_log
[function]
[call site]
03773
__errno_location
[call site]
03774
realloc_bam_data
[function]
[call site]
03775
hts_reg2bin
[function]
[call site]
03776
strncpy
[call site]
03777
cram_eof
[function]
[call site]
03778
bam_tag2cigar
[function]
[call site]
03779
sam_read1_sam
[function]
[call site]
03780
sam_parse1
[function]
[call site]
03781
strchr
[call site]
03782
hts_log
[function]
[call site]
03783
hts_log
[function]
[call site]
03784
possibly_expand_bam_data
[function]
[call site]
03785
parse_sam_flag
[function]
[call site]
03786
hts_str2uint
[function]
[call site]
03787
strtoul
[call site]
03788
strchr
[call site]
03789
strcmp
[call site]
03790
hts_log
[function]
[call site]
03791
bam_name2id
[function]
[call site]
03792
sam_hdr_name2tid
[function]
[call site]
03793
sam_hdr_fill_hrecs
[function]
[call site]
03794
kh_get_m_s2i
[function]
[call site]
03795
hts_log
[function]
[call site]
03796
hts_strprint
[function]
[call site]
03797
isprint_c
[function]
[call site]
03798
__ctype_b_loc
[call site]
03799
strcpy
[call site]
03800
snprintf
[call site]
03801
hts_log
[function]
[call site]
03802
hts_str2uint
[function]
[call site]
03803
hts_log
[function]
[call site]
03804
hts_str2uint
[function]
[call site]
03805
bam_parse_cigar
[function]
[call site]
03806
hts_log
[function]
[call site]
03807
read_ncigar
[function]
[call site]
03808
isdigit_c
[function]
[call site]
03809
hts_log
[function]
[call site]
03810
hts_log
[function]
[call site]
03811
possibly_expand_bam_data
[function]
[call site]
03812
hts_log
[function]
[call site]
03813
parse_cigar
[function]
[call site]
03814
hts_str2uint
[function]
[call site]
03815
hts_log
[function]
[call site]
03816
hts_log
[function]
[call site]
03817
hts_log
[function]
[call site]
03818
bam_cigar2rlen
[function]
[call site]
03819
hts_log
[function]
[call site]
03820
strchr
[call site]
03821
hts_log
[function]
[call site]
03822
hts_reg2bin
[function]
[call site]
03823
strchr
[call site]
03824
strcmp
[call site]
03825
strcmp
[call site]
03826
bam_name2id
[function]
[call site]
03827
hts_log
[function]
[call site]
03828
hts_strprint
[function]
[call site]
03829
hts_log
[function]
[call site]
03830
hts_str2uint
[function]
[call site]
03831
hts_log
[function]
[call site]
03832
hts_str2int
[function]
[call site]
03833
hts_log
[function]
[call site]
03834
strchr
[call site]
03835
strcmp
[call site]
03836
hts_log
[function]
[call site]
03837
bam_cigar2qlen
[function]
[call site]
03838
hts_log
[function]
[call site]
03839
possibly_expand_bam_data
[function]
[call site]
03840
possibly_expand_bam_data
[function]
[call site]
03841
hts_log
[function]
[call site]
03842
hts_log
[function]
[call site]
03843
aux_parse
[function]
[call site]
03844
hts_log
[function]
[call site]
03845
isspace_c
[function]
[call site]
03846
hts_log
[function]
[call site]
03847
isspace_c
[function]
[call site]
03848
isspace_c
[function]
[call site]
03849
kh_get_tag
[function]
[call site]
03850
possibly_expand_bam_data
[function]
[call site]
03851
isspace_c
[function]
[call site]
03852
hts_log
[function]
[call site]
03853
possibly_expand_bam_data
[function]
[call site]
03854
hts_str2int
[function]
[call site]
03855
i16_to_le
[function]
[call site]
03856
u16_to_le
[function]
[call site]
03857
i32_to_le
[function]
[call site]
03858
u32_to_le
[function]
[call site]
03859
hts_str2uint
[function]
[call site]
03860
u16_to_le
[function]
[call site]
03861
u32_to_le
[function]
[call site]
03862
strtod
[call site]
03863
float_to_le
[function]
[call site]
03864
u32_to_le
[function]
[call site]
03865
strtod
[call site]
03866
double_to_le
[function]
[call site]
03867
u64_to_le
[function]
[call site]
03868
strchr
[call site]
03869
strlen
[call site]
03870
isspace_c
[function]
[call site]
03871
hts_log
[function]
[call site]
03872
possibly_expand_bam_data
[function]
[call site]
03873
isspace_c
[function]
[call site]
03874
hts_log
[function]
[call site]
03875
sam_parse_B_vals
[function]
[call site]
03876
sam_parse_B_vals_r
[function]
[call site]
03877
hts_log
[function]
[call site]
03878
aux_type2size
[function]
[call site]
03879
hts_log
[function]
[call site]
03880
possibly_expand_bam_data
[function]
[call site]
03881
hts_log
[function]
[call site]
03882
sam_parse_Bc_vals
[function]
[call site]
03883
grow_B_array
[function]
[call site]
03884
__errno_location
[call site]
03885
possibly_expand_bam_data
[function]
[call site]
03886
hts_log
[function]
[call site]
03887
hts_str2int
[function]
[call site]
03888
sam_parse_BC_vals
[function]
[call site]
03889
grow_B_array
[function]
[call site]
03890
hts_str2uint
[function]
[call site]
03891
sam_parse_Bs_vals
[function]
[call site]
03892
grow_B_array
[function]
[call site]
03893
hts_str2int
[function]
[call site]
03894
i16_to_le
[function]
[call site]
03895
sam_parse_BS_vals
[function]
[call site]
03896
grow_B_array
[function]
[call site]
03897
hts_str2uint
[function]
[call site]
03898
u16_to_le
[function]
[call site]
03899
sam_parse_Bi_vals
[function]
[call site]
03900
grow_B_array
[function]
[call site]
03901
hts_str2int
[function]
[call site]
03902
i32_to_le
[function]
[call site]
03903
sam_parse_BI_vals
[function]
[call site]
03904
grow_B_array
[function]
[call site]
03905
hts_str2uint
[function]
[call site]
03906
u32_to_le
[function]
[call site]
03907
sam_parse_Bf_vals
[function]
[call site]
03908
grow_B_array
[function]
[call site]
03909
strtod
[call site]
03910
float_to_le
[function]
[call site]
03911
i32_to_le
[function]
[call site]
03912
hts_str2int
[function]
[call site]
03913
sam_parse_B_vals_r
[function]
[call site]
03914
sam_parse_B_vals_r
[function]
[call site]
03915
sam_parse_B_vals_r
[function]
[call site]
03916
sam_parse_B_vals_r
[function]
[call site]
03917
sam_parse_B_vals_r
[function]
[call site]
03918
sam_parse_B_vals_r
[function]
[call site]
03919
hts_log
[function]
[call site]
03920
isspace_c
[function]
[call site]
03921
hts_strprint
[function]
[call site]
03922
hts_log
[function]
[call site]
03923
isspace_c
[function]
[call site]
03924
hts_log
[function]
[call site]
03925
bam_tag2cigar
[function]
[call site]
03926
sam_state_destroy
[function]
[call site]
03927
__errno_location
[call site]
03928
bgzf_seek
[function]
[call site]
03929
bgzf_seek_common
[function]
[call site]
03930
sam_hdr_fill_hrecs
[function]
[call site]
03931
pthread_create
[call site]
03932
sam_dispatcher_read
[function]
[call site]
03933
ks_resize
[function]
[call site]
03934
pthread_mutex_lock
[call site]
03935
pthread_cond_signal
[call site]
03936
pthread_mutex_unlock
[call site]
03937
hts_tpool_process_shutdown
[function]
[call site]
03938
pthread_mutex_unlock
[call site]
03939
pthread_mutex_lock
[call site]
03940
pthread_mutex_unlock
[call site]
03941
calloc
[call site]
03942
realloc
[call site]
03943
bgzf_read
[function]
[call site]
03944
hread
[function]
[call site]
03945
__errno_location
[call site]
03946
sam_state_err
[function]
[call site]
03947
realloc
[call site]
03948
__assert_fail
[call site]
03949
__assert_fail
[call site]
03950
__assert_fail
[call site]
03951
ks_resize
[function]
[call site]
03952
hts_tpool_dispatch3
[function]
[call site]
03953
sam_parse_worker
[function]
[call site]
03954
pthread_mutex_lock
[call site]
03955
pthread_mutex_unlock
[call site]
03956
calloc
[call site]
03957
calloc
[call site]
03958
sam_state_err
[function]
[call site]
03959
sam_state_err
[function]
[call site]
03960
realloc
[call site]
03961
sam_state_err
[function]
[call site]
03962
strchr
[call site]
03963
sam_parse1
[function]
[call site]
03964
__errno_location
[call site]
03965
sam_state_err
[function]
[call site]
03966
cleanup_sp_lines
[function]
[call site]
03967
__assert_fail
[call site]
03968
sam_free_sp_bams
[function]
[call site]
03969
pthread_mutex_lock
[call site]
03970
pthread_mutex_unlock
[call site]
03971
sam_free_sp_bams
[function]
[call site]
03972
cleanup_sp_lines
[function]
[call site]
03973
cleanup_sp_bams
[function]
[call site]
03974
sam_free_sp_bams
[function]
[call site]
03975
pthread_mutex_lock
[call site]
03976
pthread_mutex_unlock
[call site]
03977
pthread_mutex_unlock
[call site]
03978
hts_tpool_dispatch
[function]
[call site]
03979
sam_parse_eof
[function]
[call site]
03980
pthread_mutex_lock
[call site]
03981
pthread_cond_wait
[call site]
03982
pthread_cond_signal
[call site]
03983
pthread_mutex_unlock
[call site]
03984
hts_tpool_process_shutdown
[function]
[call site]
03985
pthread_mutex_unlock
[call site]
03986
pthread_mutex_lock
[call site]
03987
pthread_cond_signal
[call site]
03988
pthread_mutex_lock
[call site]
03989
pthread_mutex_unlock
[call site]
03990
__errno_location
[call site]
03991
sam_state_err
[function]
[call site]
03992
hts_tpool_process_shutdown
[function]
[call site]
03993
hts_log
[function]
[call site]
03994
__errno_location
[call site]
03995
pthread_mutex_lock
[call site]
03996
pthread_mutex_unlock
[call site]
03997
hts_tpool_next_result_wait
[function]
[call site]
03998
hts_tpool_result_data
[function]
[call site]
03999
hts_tpool_delete_result
[function]
[call site]
04000
pthread_mutex_lock
[call site]
04001
pthread_mutex_unlock
[call site]
04002
bam_copy1
[function]
[call site]
04003
realloc_bam_data
[function]
[call site]
04004
pthread_mutex_lock
[call site]
04005
pthread_mutex_unlock
[call site]
04006
hts_getline
[function]
[call site]
04007
sam_parse1
[function]
[call site]
04008
hts_log
[function]
[call site]
04009
fastq_state_init
[function]
[call site]
04010
fastq_parse1
[function]
[call site]
04011
hts_getline
[function]
[call site]
04012
strpbrk
[call site]
04013
isspace_c
[function]
[call site]
04014
isspace_c
[function]
[call site]
04015
hts_getline
[function]
[call site]
04016
kputsn
[function]
[call site]
04017
hts_getline
[function]
[call site]
04018
kputsn
[function]
[call site]
04019
isdigit_c
[function]
[call site]
04020
regexec
[call site]
04021
hts_log
[function]
[call site]
04022
isalpha_c
[function]
[call site]
04023
bam_set1
[function]
[call site]
04024
bam_aux_append
[function]
[call site]
04025
__assert_fail
[call site]
04026
realloc_bam_data
[function]
[call site]
04027
__errno_location
[call site]
04028
isdigit_c
[function]
[call site]
04029
strtol
[call site]
04030
isdigit_c
[function]
[call site]
04031
isspace_c
[function]
[call site]
04032
bam_aux_append
[function]
[call site]
04033
aux_parse
[function]
[call site]
04034
__errno_location
[call site]
04035
__errno_location
[call site]
04036
sam_passes_filter
[function]
[call site]
04037
hts_filter_eval2
[function]
[call site]
04038
ks_free
[function]
[call site]
04039
hts_filter_eval_
[function]
[call site]
04040
expression
[function]
[call site]
04041
and_expr
[function]
[call site]
04042
eq_expr
[function]
[call site]
04043
cmp_expr
[function]
[call site]
04044
bitor_expr
[function]
[call site]
04045
bitxor_expr
[function]
[call site]
04046
bitand_expr
[function]
[call site]
04047
add_expr
[function]
[call site]
04048
mul_expr
[function]
[call site]
04049
unary_expr
[function]
[call site]
04050
ws
[function]
[call site]
04051
simple_expr
[function]
[call site]
04052
ws
[function]
[call site]
04053
expression
[function]
[call site]
04054
ws
[function]
[call site]
04055
fprintf
[call site]
04056
hts_str2dbl
[function]
[call site]
04057
ks_clear
[function]
[call site]
04061
kputsn
[function]
[call site]
04062
func_expr
[function]
[call site]
04063
strncmp
[call site]
04064
expression
[function]
[call site]
04065
expr_func_avg
[function]
[call site]
04066
strncmp
[call site]
04067
expression
[function]
[call site]
04068
ws
[function]
[call site]
04069
expression
[function]
[call site]
04070
hts_expr_val_existsT
[function]
[call site]
04071
hts_expr_val_exists
[function]
[call site]
04072
hts_expr_val_free
[function]
[call site]
04073
ks_free
[function]
[call site]
04074
strncmp
[call site]
04075
expression
[function]
[call site]
04076
hts_expr_val_existsT
[function]
[call site]
04077
strncmp
[call site]
04078
expression
[function]
[call site]
04079
exp
[call site]
04080
hts_expr_val_undef
[function]
[call site]
04081
ks_clear
[function]
[call site]
04082
strncmp
[call site]
04083
expression
[function]
[call site]
04084
expr_func_length
[function]
[call site]
04085
strncmp
[call site]
04086
expression
[function]
[call site]
04087
log
[call site]
04088
hts_expr_val_undef
[function]
[call site]
04089
strncmp
[call site]
04090
expression
[function]
[call site]
04091
expr_func_min
[function]
[call site]
04092
strncmp
[call site]
04093
expression
[function]
[call site]
04094
expr_func_max
[function]
[call site]
04095
strncmp
[call site]
04096
expression
[function]
[call site]
04097
ws
[function]
[call site]
04098
expression
[function]
[call site]
04099
hts_expr_val_exists
[function]
[call site]
04100
hts_expr_val_undef
[function]
[call site]
04101
hts_expr_val_free
[function]
[call site]
04102
pow
[call site]
04103
hts_expr_val_free
[function]
[call site]
04104
hts_expr_val_undef
[function]
[call site]
04105
strncmp
[call site]
04106
expression
[function]
[call site]
04107
sqrt
[call site]
04108
hts_expr_val_undef
[function]
[call site]
04109
ws
[function]
[call site]
04110
fprintf
[call site]
04111
hts_expr_val_exists
[function]
[call site]
04112
hts_expr_val_undef
[function]
[call site]
04113
unary_expr
[function]
[call site]
04114
hts_expr_val_exists
[function]
[call site]
04115
unary_expr
[function]
[call site]
04116
hts_expr_val_exists
[function]
[call site]
04117
hts_expr_val_undef
[function]
[call site]
04118
hts_expr_val_exists
[function]
[call site]
04119
hts_expr_val_undef
[function]
[call site]
04120
simple_expr
[function]
[call site]
04121
ws
[function]
[call site]
04122
unary_expr
[function]
[call site]
04123
hts_expr_val_exists
[function]
[call site]
04124
hts_expr_val_undef
[function]
[call site]
04125
hts_expr_val_free
[function]
[call site]
04126
hts_expr_val_undef
[function]
[call site]
04127
hts_expr_val_exists
[function]
[call site]
04128
hts_expr_val_free
[function]
[call site]
04129
ws
[function]
[call site]
04130
mul_expr
[function]
[call site]
04131
hts_expr_val_exists
[function]
[call site]
04132
hts_expr_val_free
[function]
[call site]
04133
hts_expr_val_undef
[function]
[call site]
04134
hts_expr_val_free
[function]
[call site]
04135
ws
[function]
[call site]
04136
add_expr
[function]
[call site]
04137
hts_expr_val_exists
[function]
[call site]
04138
hts_expr_val_free
[function]
[call site]
04139
hts_expr_val_free
[function]
[call site]
04140
hts_expr_val_undef
[function]
[call site]
04141
ws
[function]
[call site]
04142
bitand_expr
[function]
[call site]
04143
hts_expr_val_exists
[function]
[call site]
04144
hts_expr_val_free
[function]
[call site]
04145
hts_expr_val_free
[function]
[call site]
04146
hts_expr_val_undef
[function]
[call site]
04147
ws
[function]
[call site]
04148
bitxor_expr
[function]
[call site]
04149
hts_expr_val_exists
[function]
[call site]
04150
hts_expr_val_free
[function]
[call site]
04151
hts_expr_val_free
[function]
[call site]
04152
hts_expr_val_undef
[function]
[call site]
04153
ws
[function]
[call site]
04154
cmp_expr
[function]
[call site]
04155
hts_expr_val_exists
[function]
[call site]
04156
hts_expr_val_undef
[function]
[call site]
04157
strcmp
[call site]
04158
cmp_expr
[function]
[call site]
04159
hts_expr_val_exists
[function]
[call site]
04160
hts_expr_val_undef
[function]
[call site]
04161
strcmp
[call site]
04162
cmp_expr
[function]
[call site]
04163
hts_expr_val_exists
[function]
[call site]
04164
hts_expr_val_undef
[function]
[call site]
04165
strcmp
[call site]
04166
cmp_expr
[function]
[call site]
04167
hts_expr_val_exists
[function]
[call site]
04168
hts_expr_val_undef
[function]
[call site]
04169
strcmp
[call site]
04170
hts_expr_val_exists
[function]
[call site]
04171
hts_expr_val_undef
[function]
[call site]
04172
hts_expr_val_free
[function]
[call site]
04173
ws
[function]
[call site]
04174
eq_expr
[function]
[call site]
04175
hts_expr_val_exists
[function]
[call site]
04176
hts_expr_val_undef
[function]
[call site]
04177
strcmp
[call site]
04178
eq_expr
[function]
[call site]
04179
hts_expr_val_exists
[function]
[call site]
04180
hts_expr_val_undef
[function]
[call site]
04181
strcmp
[call site]
04182
eq_expr
[function]
[call site]
04183
hts_expr_val_free
[function]
[call site]
04184
regcomp
[call site]
04185
regerror
[call site]
04186
fprintf
[call site]
04187
hts_expr_val_free
[function]
[call site]
04188
regexec
[call site]
04189
regfree
[call site]
04190
hts_expr_val_exists
[function]
[call site]
04191
hts_expr_val_undef
[function]
[call site]
04192
hts_expr_val_free
[function]
[call site]
04193
ws
[function]
[call site]
04194
eq_expr
[function]
[call site]
04195
hts_expr_val_existsT
[function]
[call site]
04196
hts_expr_val_undef
[function]
[call site]
04197
eq_expr
[function]
[call site]
04198
hts_expr_val_existsT
[function]
[call site]
04199
hts_expr_val_undef
[function]
[call site]
04200
hts_expr_val_existsT
[function]
[call site]
04201
hts_expr_val_undef
[function]
[call site]
04202
hts_expr_val_existsT
[function]
[call site]
04203
hts_expr_val_undef
[function]
[call site]
04204
hts_expr_val_free
[function]
[call site]
04205
ws
[function]
[call site]
04206
fprintf
[call site]
04207
hts_expr_val_exists
[function]
[call site]
04208
bam_sym_lookup
[function]
[call site]
04209
memcmp
[call site]
04210
ks_clear
[function]
[call site]
04211
kputw
[function]
[call site]
04212
kputc_
[function]
[call site]
04213
kputs
[function]
[call site]
04214
kputs
[function]
[call site]
04215
memcmp
[call site]
04216
bam_endpos
[function]
[call site]
04217
memcmp
[call site]
04218
memcmp
[call site]
04219
memcmp
[call site]
04220
memcmp
[call site]
04221
memcmp
[call site]
04222
memcmp
[call site]
04223
memcmp
[call site]
04224
memcmp
[call site]
04225
memcmp
[call site]
04226
memcmp
[call site]
04227
memcmp
[call site]
04228
memcmp
[call site]
04229
memcmp
[call site]
04230
memcmp
[call site]
04231
memcmp
[call site]
04232
bam_get_library
[function]
[call site]
04233
bam_aux_get
[function]
[call site]
04234
sam_hdr_find_tag_id
[function]
[call site]
04235
ks_clear
[function]
[call site]
04236
kputs
[function]
[call site]
04237
memcmp
[call site]
04238
memcmp
[call site]
04239
memcmp
[call site]
04240
sam_hdr_tid2name
[function]
[call site]
04241
ks_clear
[function]
[call site]
04242
kputs
[function]
[call site]
04243
memcmp
[call site]
04244
memcmp
[call site]
04245
memcmp
[call site]
04246
memcmp
[call site]
04247
memcmp
[call site]
04248
bam_cigar2qlen
[function]
[call site]
04249
memcmp
[call site]
04250
ks_clear
[function]
[call site]
04251
kputs
[function]
[call site]
04252
memcmp
[call site]
04253
ks_clear
[function]
[call site]
04254
ks_resize
[function]
[call site]
04255
memcmp
[call site]
04256
bam_cigar2rlen
[function]
[call site]
04257
memcmp
[call site]
04258
sam_hdr_tid2name
[function]
[call site]
04259
ks_clear
[function]
[call site]
04260
kputs
[function]
[call site]
04261
memcmp
[call site]
04262
sam_hdr_tid2name
[function]
[call site]
04263
ks_clear
[function]
[call site]
04264
kputs
[function]
[call site]
04265
memcmp
[call site]
04266
memcmp
[call site]
04267
ks_clear
[function]
[call site]
04268
ks_resize
[function]
[call site]
04269
nibble2base
[function]
[call site]
04270
memcmp
[call site]
04271
memcmp
[call site]
04272
bam_aux_get
[function]
[call site]
04273
ks_clear
[function]
[call site]
04274
kputs
[function]
[call site]
04275
ks_clear
[function]
[call site]
04276
kputsn
[function]
[call site]
04277
bam_aux2i
[function]
[call site]
04278
get_int_aux_val
[function]
[call site]
04279
le_to_i8
[function]
[call site]
04280
le_to_i16
[function]
[call site]
04281
le_to_u16
[function]
[call site]
04282
le_to_i32
[function]
[call site]
04283
le_to_u32
[function]
[call site]
04284
__errno_location
[call site]
04285
bam_aux2f
[function]
[call site]
04286
le_to_double
[function]
[call site]
04287
le_to_float
[function]
[call site]
04288
get_int_aux_val
[function]
[call site]
04289
hts_log
[function]
[call site]
04290
hts_log
[function]
[call site]
04291
hts_expr_val_free
[function]
[call site]
04292
hts_expr_val_free
[function]
[call site]
04293
sam_write1
[function]
[call site]
04294
bam_write_idx1
[function]
[call site]
04295
bam_write1
[function]
[call site]
04296
hts_log
[function]
[call site]
04297
__errno_location
[call site]
04298
hts_log
[function]
[call site]
04299
bgzf_flush_try
[function]
[call site]
04300
lazy_flush
[function]
[call site]
04301
ed_swap_4p
[function]
[call site]
04302
ed_swap_4p
[function]
[call site]
04303
bgzf_write_small
[function]
[call site]
04304
bgzf_write
[function]
[call site]
04305
swap_data
[function]
[call site]
04306
bgzf_write_small
[function]
[call site]
04307
bgzf_write_small
[function]
[call site]
04308
bgzf_write_small
[function]
[call site]
04309
bgzf_write_small
[function]
[call site]
04310
bam_cigar2rlen
[function]
[call site]
04311
hts_log
[function]
[call site]
04312
u32_to_le
[function]
[call site]
04313
u32_to_le
[function]
[call site]
04314
bgzf_write_small
[function]
[call site]
04315
bgzf_write_small
[function]
[call site]
04316
bgzf_write_small
[function]
[call site]
04317
u32_to_le
[function]
[call site]
04318
bgzf_write_small
[function]
[call site]
04319
bgzf_write_small
[function]
[call site]
04320
swap_data
[function]
[call site]
04321
bgzf_flush_try
[function]
[call site]
04322
hts_idx_amend_last
[function]
[call site]
04323
bam_write1
[function]
[call site]
04324
bam_endpos
[function]
[call site]
04325
bgzf_idx_push
[function]
[call site]
04326
hts_idx_push
[function]
[call site]
04327
hts_idx_check_range
[function]
[call site]
04328
hts_idx_maxpos
[function]
[call site]
04329
hts_bin_maxpos
[function]
[call site]
04330
hts_log
[function]
[call site]
04331
idx_format_name
[function]
[call site]
04332
hts_log
[function]
[call site]
04333
__errno_location
[call site]
04334
realloc
[call site]
04335
realloc
[call site]
04336
hts_log
[function]
[call site]
04337
hts_log
[function]
[call site]
04338
hts_log
[function]
[call site]
04339
hts_log
[function]
[call site]
04340
kh_init_bin
[function]
[call site]
04341
calloc
[call site]
04342
insert_to_l
[function]
[call site]
04343
realloc
[call site]
04344
hts_reg2bin
[function]
[call site]
04345
insert_to_b
[function]
[call site]
04346
kh_put_bin
[function]
[call site]
04347
kh_resize_bin
[function]
[call site]
04348
realloc
[call site]
04349
calloc
[call site]
04350
kh_del_bin
[function]
[call site]
04351
realloc
[call site]
04352
insert_to_b
[function]
[call site]
04353
insert_to_b
[function]
[call site]
04354
hts_idx_check_range
[function]
[call site]
04355
pthread_mutex_lock
[call site]
04356
realloc
[call site]
04357
pthread_mutex_unlock
[call site]
04358
pthread_mutex_unlock
[call site]
04359
sam_hdr_tid2name
[function]
[call site]
04360
sam_hdr_tid2len
[function]
[call site]
04361
kh_get_s2i
[function]
[call site]
04362
hts_log
[function]
[call site]
04363
cram_put_bam_seq
[function]
[call site]
04364
cram_new_container
[function]
[call site]
04365
pthread_mutex_lock
[call site]
04366
pthread_mutex_unlock
[call site]
04367
hts_log
[function]
[call site]
04368
pthread_mutex_lock
[call site]
04369
hts_log
[function]
[call site]
04370
pthread_mutex_unlock
[call site]
04371
cram_next_container
[function]
[call site]
04372
cram_update_curr_slice
[function]
[call site]
04373
hts_log
[function]
[call site]
04374
cram_flush_container_mt
[function]
[call site]
04375
cram_free_slice
[function]
[call site]
04376
cram_free_container
[function]
[call site]
04377
cram_new_container
[function]
[call site]
04378
pthread_mutex_lock
[call site]
04379
pthread_mutex_unlock
[call site]
04380
cram_new_slice
[function]
[call site]
04381
calloc
[call site]
04382
calloc
[call site]
04383
cram_new_block
[function]
[call site]
04384
cram_new_block
[function]
[call site]
04385
cram_new_block
[function]
[call site]
04386
cram_new_block
[function]
[call site]
04387
cram_new_block
[function]
[call site]
04388
cram_new_block
[function]
[call site]
04389
string_pool_create
[function]
[call site]
04390
kh_init_m_s2i
[function]
[call site]
04391
kh_init_m_s2i
[function]
[call site]
04392
cram_free_slice
[function]
[call site]
04393
pthread_mutex_lock
[call site]
04394
hts_log
[function]
[call site]
04395
pthread_mutex_unlock
[call site]
04396
pthread_mutex_lock
[call site]
04397
calloc
[call site]
04398
pthread_mutex_unlock
[call site]
04399
pthread_mutex_lock
[call site]
04400
calloc
[call site]
04401
pthread_mutex_unlock
[call site]
04402
pthread_mutex_lock
[call site]
04403
pthread_mutex_unlock
[call site]
04404
pthread_mutex_lock
[call site]
04405
calloc
[call site]
04406
pthread_mutex_unlock
[call site]
04407
pthread_mutex_unlock
[call site]
04408
bam_copy1
[function]
[call site]
04409
bam_dup1
[function]
[call site]
04410
bam_init1
[function]
[call site]
04411
bam_copy1
[function]
[call site]
04412
bam_destroy1
[function]
[call site]
04413
bam_cigar2qlen
[function]
[call site]
04414
hts_log
[function]
[call site]
04415
pthread_create
[call site]
04416
sam_dispatcher_write
[function]
[call site]
04417
hts_tpool_next_result_wait
[function]
[call site]
04418
hts_tpool_result_data
[function]
[call site]
04419
sam_state_err
[function]
[call site]
04420
bgzf_flush_try
[function]
[call site]
04421
bgzf_write
[function]
[call site]
04422
hwrite
[function]
[call site]
04423
bam_endpos
[function]
[call site]
04424
bgzf_idx_push
[function]
[call site]
04425
__errno_location
[call site]
04426
sam_state_err
[function]
[call site]
04427
sam_hdr_tid2name
[function]
[call site]
04428
sam_hdr_tid2len
[function]
[call site]
04429
hts_log
[function]
[call site]
04430
bam_endpos
[function]
[call site]
04431
hts_idx_push
[function]
[call site]
04432
__errno_location
[call site]
04433
sam_state_err
[function]
[call site]
04434
sam_hdr_tid2name
[function]
[call site]
04435
sam_hdr_tid2len
[function]
[call site]
04436
hts_log
[function]
[call site]
04437
__assert_fail
[call site]
04438
pthread_mutex_lock
[call site]
04439
pthread_mutex_unlock
[call site]
04440
bgzf_write
[function]
[call site]
04441
bgzf_flush_try
[function]
[call site]
04442
bgzf_write
[function]
[call site]
04443
hwrite
[function]
[call site]
04444
hts_tpool_delete_result
[function]
[call site]
04445
pthread_mutex_lock
[call site]
04446
pthread_mutex_unlock
[call site]
04447
sam_state_err
[function]
[call site]
04448
hts_tpool_process_shutdown
[function]
[call site]
04449
__errno_location
[call site]
04450
sam_state_err
[function]
[call site]
04451
hts_log
[function]
[call site]
04452
pthread_mutex_lock
[call site]
04453
pthread_mutex_unlock
[call site]
04454
pthread_mutex_unlock
[call site]
04455
calloc
[call site]
04456
calloc
[call site]
04457
bam_copy1
[function]
[call site]
04458
pthread_mutex_lock
[call site]
04459
pthread_mutex_unlock
[call site]
04460
hts_tpool_dispatch3
[function]
[call site]
04461
sam_format_worker
[function]
[call site]
04462
cleanup_sp_bams
[function]
[call site]
04463
cleanup_sp_lines
[function]
[call site]
04464
pthread_mutex_unlock
[call site]
04465
pthread_mutex_unlock
[call site]
04466
sam_format1
[function]
[call site]
04467
sam_format1_append
[function]
[call site]
04468
kputc
[function]
[call site]
04469
bgzf_flush_try
[function]
[call site]
04470
bgzf_write
[function]
[call site]
04471
hwrite
[function]
[call site]
04472
bam_endpos
[function]
[call site]
04473
bgzf_idx_push
[function]
[call site]
04474
sam_hdr_tid2name
[function]
[call site]
04475
sam_hdr_tid2len
[function]
[call site]
04476
hts_log
[function]
[call site]
04477
bam_endpos
[function]
[call site]
04478
hts_idx_push
[function]
[call site]
04479
sam_hdr_tid2name
[function]
[call site]
04480
sam_hdr_tid2len
[function]
[call site]
04481
hts_log
[function]
[call site]
04482
fastq_state_init
[function]
[call site]
04483
fastq_format1
[function]
[call site]
04484
kputc
[function]
[call site]
04485
kputs
[function]
[call site]
04486
bam_aux_get
[function]
[call site]
04487
kputc
[function]
[call site]
04488
isalpha_c
[function]
[call site]
04489
toupper_c
[function]
[call site]
04490
kputc
[function]
[call site]
04491
kputs
[function]
[call site]
04492
kputs
[function]
[call site]
04493
kputs
[function]
[call site]
04494
bam_aux_get
[function]
[call site]
04495
ksprintf
[function]
[call site]
04496
isupper_c
[function]
[call site]
04497
__ctype_b_loc
[call site]
04498
islower_c
[function]
[call site]
04499
__ctype_b_loc
[call site]
04500
hts_log
[function]
[call site]
04501
strlen
[call site]
04502
strlen
[call site]
04503
isalpha_c
[function]
[call site]
04504
islower_c
[function]
[call site]
04505
toupper_c
[function]
[call site]
04506
kh_get_tag
[function]
[call site]
04507
kputc_
[function]
[call site]
04508
sam_format_aux1
[function]
[call site]
04509
skip_aux
[function]
[call site]
04510
kputsn
[function]
[call site]
04511
ks_resize
[function]
[call site]
04512
kputc_
[function]
[call site]
04513
kputc_
[function]
[call site]
04514
kputc_
[function]
[call site]
04515
kputsn
[function]
[call site]
04516
kputc_
[function]
[call site]
04517
kputc_
[function]
[call site]
04518
kputc_
[function]
[call site]
04519
kputc
[function]
[call site]
04520
bgzf_flush_try
[function]
[call site]
04521
bgzf_write
[function]
[call site]
04522
hwrite
[function]
[call site]
04523
__errno_location
[call site]
04524
bam_destroy1
[function]
[call site]
04525
sam_hdr_destroy
[function]
[call site]
04526
hts_close_or_abort
[function]
[call site]
04527
hts_close
[function]
[call site]
04528
hts_close
[function]
[call site]
04529
view_sam
[function]
[call site]
04530
view_sam
[function]
[call site]
04531
view_vcf
[function]
[call site]
04532
abort
[call site]
04533
hopen
[function]
[call site]
04534
hts_hopen
[function]
[call site]
04535
hclose
[function]
[call site]
04536
abort
[call site]
04537
hts_open
[function]
[call site]
04538
abort
[call site]
04539
bcf_hdr_read
[function]
[call site]
04540
vcf_hdr_read
[function]
[call site]
04541
bcf_hdr_init
[function]
[call site]
04542
calloc
[call site]
04543
kh_init_vdict
[function]
[call site]
04544
calloc
[call site]
04545
kh_resize_vdict
[function]
[call site]
04546
realloc
[call site]
04547
__ac_FNV1a_hash_string
[function]
[call site]
04548
calloc
[call site]
04549
kh_init_hdict
[function]
[call site]
04550
strchr
[call site]
04551
bcf_hdr_append
[function]
[call site]
04552
bcf_hdr_parse_line
[function]
[call site]
04553
calloc
[call site]
04554
isalpha_c
[function]
[call site]
04555
isalnum_c
[function]
[call site]
04556
bcf_hrec_add_key
[function]
[call site]
04557
is_escaped
[function]
[call site]
04561
hts_strprint
[function]
[call site]
04562
hts_log
[function]
[call site]
04563
bcf_hrec_set_val
[function]
[call site]
04564
__errno_location
[call site]
04565
__errno_location
[call site]
04566
hts_log
[function]
[call site]
04567
isspace_c
[function]
[call site]
04568
hts_strprint
[function]
[call site]
04569
hts_log
[function]
[call site]
04570
bcf_hrec_destroy
[function]
[call site]
04571
hts_strprint
[function]
[call site]
04572
hts_log
[function]
[call site]
04573
bcf_hrec_destroy
[function]
[call site]
04574
bcf_hdr_add_hrec
[function]
[call site]
04575
get_hdr_aux
[function]
[call site]
04576
bcf_hrec_check
[function]
[call site]
04577
bcf_hrec_set_type
[function]
[call site]
04578
strcmp
[call site]
04579
strcmp
[call site]
04580
strcmp
[call site]
04581
strcmp
[call site]
04582
bcf_hrec_find_key
[function]
[call site]
04583
strcasecmp
[call site]
04584
bcf_hrec_find_key
[function]
[call site]
04585
strcmp
[call site]
04586
bcf_hrec_find_key
[function]
[call site]
04587
hts_log
[function]
[call site]
04588
hts_log
[function]
[call site]
04589
hts_log
[function]
[call site]
04590
bcf_hdr_register_hrec
[function]
[call site]
04591
bcf_hrec_set_type
[function]
[call site]
04592
bcf_hrec_find_key
[function]
[call site]
04593
strtoll
[call site]
04594
bcf_hrec_find_key
[function]
[call site]
04595
strdup
[call site]
04596
kh_get_vdict
[function]
[call site]
04597
strcmp
[call site]
04598
kh_put_vdict
[function]
[call site]
04599
kh_resize_vdict
[function]
[call site]
04600
bcf_hrec_find_key
[function]
[call site]
04601
strtol
[call site]
04602
kh_del_vdict
[function]
[call site]
04603
hts_log
[function]
[call site]
04604
bcf_hdr_set_idx
[function]
[call site]
04605
hts_log
[function]
[call site]
04606
__errno_location
[call site]
04607
hts_resize_array_
[function]
[call site]
04608
hts_log
[function]
[call site]
04609
__errno_location
[call site]
04610
realloc
[call site]
04611
__errno_location
[call site]
04612
__errno_location
[call site]
04613
strerror
[call site]
04614
hts_log
[function]
[call site]
04615
__errno_location
[call site]
04616
abort
[call site]
04617
abort
[call site]
04618
kh_del_vdict
[function]
[call site]
04619
hrec_add_idx
[function]
[call site]
04620
realloc
[call site]
04621
realloc
[call site]
04622
strdup
[call site]
04623
kputw
[function]
[call site]
04624
strcmp
[call site]
04625
strcmp
[call site]
04626
strtol
[call site]
04627
hts_log
[function]
[call site]
04628
strcmp
[call site]
04629
strcmp
[call site]
04630
strcmp
[call site]
04631
strcmp
[call site]
04632
strcmp
[call site]
04633
strcmp
[call site]
04634
hts_log
[function]
[call site]
04635
strcmp
[call site]
04636
strcmp
[call site]
04637
strcmp
[call site]
04638
strcmp
[call site]
04639
strcmp
[call site]
04640
strcmp
[call site]
04641
strcmp
[call site]
04642
strcmp
[call site]
04643
strcmp
[call site]
04644
strcmp
[call site]
04645
__isoc99_sscanf
[call site]
04646
hts_log
[function]
[call site]
04647
hts_log
[function]
[call site]
04648
hts_log
[function]
[call site]
04649
strdup
[call site]
04650
kh_get_vdict
[function]
[call site]
04651
hrec_add_idx
[function]
[call site]
04652
kh_put_vdict
[function]
[call site]
04653
bcf_hdr_set_idx
[function]
[call site]
04654
kh_del_vdict
[function]
[call site]
04655
hrec_add_idx
[function]
[call site]
04656
bcf_hrec_destroy
[function]
[call site]
04657
ksprintf
[function]
[call site]
04658
kh_get_hdict
[function]
[call site]
04659
__ac_FNV1a_hash_string
[function]
[call site]
04660
bcf_hrec_destroy
[function]
[call site]
04661
strcmp
[call site]
04662
bcf_get_version
[function]
[call site]
04663
get_hdr_aux
[function]
[call site]
04664
bcf_hdr_get_version
[function]
[call site]
04665
bcf_hdr_get_hrec
[function]
[call site]
04666
ksprintf
[function]
[call site]
04667
get_hdr_aux
[function]
[call site]
04668
kh_get_hdict
[function]
[call site]
04669
strcmp
[call site]
04670
strcmp
[call site]
04671
ksprintf
[function]
[call site]
04672
get_hdr_aux
[function]
[call site]
04673
kh_get_hdict
[function]
[call site]
04674
strcmp
[call site]
04675
bcf_hrec_find_key
[function]
[call site]
04676
strcmp
[call site]
04677
kh_get_vdict
[function]
[call site]
04678
hts_log
[function]
[call site]
04679
strstr
[call site]
04680
strchr
[call site]
04681
strtol
[call site]
04682
__errno_location
[call site]
04683
__errno_location
[call site]
04684
strtol
[call site]
04685
__errno_location
[call site]
04686
__errno_location
[call site]
04687
bcf_hrec_find_key
[function]
[call site]
04688
ksprintf
[function]
[call site]
04689
kh_get_hdict
[function]
[call site]
04690
bcf_hrec_destroy
[function]
[call site]
04691
realloc
[call site]
04692
bcf_hdr_unregister_hrec
[function]
[call site]
04693
bcf_hrec_find_key
[function]
[call site]
04694
kh_get_vdict
[function]
[call site]
04695
kh_put_hdict
[function]
[call site]
04696
kh_resize_hdict
[function]
[call site]
04697
bcf_hdr_append
[function]
[call site]
04698
kh_destroy_vdict
[function]
[call site]
04699
hts_log
[function]
[call site]
04700
hts_getline
[function]
[call site]
04701
hts_log
[function]
[call site]
04702
hopen
[function]
[call site]
04703
hts_log
[function]
[call site]
04704
kgetline
[function]
[call site]
04705
hgets
[function]
[call site]
04706
strchr
[call site]
04707
kputs
[function]
[call site]
04708
kputsn
[function]
[call site]
04709
kputs
[function]
[call site]
04710
atol
[call site]
04711
kputl
[function]
[call site]
04712
kputll
[function]
[call site]
04713
kputsn
[function]
[call site]
04714
hclose
[function]
[call site]
04715
hts_log
[function]
[call site]
04716
kputsn
[function]
[call site]
04717
kputc
[function]
[call site]
04718
hts_log
[function]
[call site]
04719
bcf_hdr_parse
[function]
[call site]
04720
bcf_hdr_parse_line
[function]
[call site]
04721
strcasecmp
[call site]
04722
hts_log
[function]
[call site]
04723
bcf_hdr_add_hrec
[function]
[call site]
04724
bcf_hrec_destroy
[function]
[call site]
04725
bcf_hdr_parse_line
[function]
[call site]
04726
bcf_hdr_add_hrec
[function]
[call site]
04727
bcf_hrec_destroy
[function]
[call site]
04728
bcf_hdr_parse_line
[function]
[call site]
04729
bcf_hdr_add_hrec
[function]
[call site]
04730
bcf_hrec_destroy
[function]
[call site]
04731
__assert_fail
[call site]
04732
__errno_location
[call site]
04733
strerror
[call site]
04734
hts_log
[function]
[call site]
04735
strncmp
[call site]
04736
strchr
[call site]
04737
hts_strprint
[function]
[call site]
04738
hts_log
[function]
[call site]
04739
hts_log
[function]
[call site]
04740
bcf_hdr_parse_sample_line
[function]
[call site]
04741
strlen
[call site]
04742
strncmp
[call site]
04743
hts_log
[function]
[call site]
04744
strlen
[call site]
04745
strncmp
[call site]
04746
hts_log
[function]
[call site]
04747
bcf_hdr_add_sample_len
[function]
[call site]
04748
isspace_c
[function]
[call site]
04749
hts_log
[function]
[call site]
04750
kh_put_vdict
[function]
[call site]
04751
hts_log
[function]
[call site]
04752
bcf_hdr_sync
[function]
[call site]
04753
realloc
[call site]
04754
get_hdr_aux
[function]
[call site]
04755
bcf_hdr_check_sanity
[function]
[call site]
04756
bcf_get_version
[function]
[call site]
04757
bcf_hdr_id2int
[function]
[call site]
04758
kh_get_vdict
[function]
[call site]
04759
hts_log
[function]
[call site]
04760
bcf_hdr_id2int
[function]
[call site]
04761
hts_log
[function]
[call site]
04762
tbx_index_load3
[function]
[call site]
04763
index_load
[function]
[call site]
04764
calloc
[call site]
04765
hts_idx_load3
[function]
[call site]
04766
idx_find_and_load
[function]
[call site]
04767
strstr
[call site]
04768
strdup
[call site]
04769
__errno_location
[call site]
04770
strerror
[call site]
04771
hts_log
[function]
[call site]
04772
hts_idx_load3
[function]
[call site]
04773
hisremote
[function]
[call site]
04774
stat
[call site]
04775
hts_log
[function]
[call site]
04776
idx_test_and_fetch
[function]
[call site]
04777
hisremote
[function]
[call site]
04778
strncmp
[call site]
04779
strcspn
[call site]
04780
kputsn
[function]
[call site]
04781
access
[call site]
04782
hopen
[function]
[call site]
04783
hts_log
[function]
[call site]
04784
hts_detect_format2
[function]
[call site]
04785
hts_log
[function]
[call site]
04786
hts_log
[function]
[call site]
04787
hts_open_tmpfile
[function]
[call site]
04788
hts_log
[function]
[call site]
04789
hts_log
[function]
[call site]
04790
calloc
[call site]
04791
__errno_location
[call site]
04792
strerror
[call site]
04793
hts_log
[function]
[call site]
04794
hread
[function]
[call site]
04795
hwrite
[function]
[call site]
04796
__errno_location
[call site]
04797
strerror
[call site]
04798
hts_log
[function]
[call site]
04799
hts_log
[function]
[call site]
04800
hclose
[function]
[call site]
04801
__errno_location
[call site]
04802
strerror
[call site]
04803
hts_log
[function]
[call site]
04804
rename
[call site]
04805
__errno_location
[call site]
04806
strerror
[call site]
04807
hts_log
[function]
[call site]
04808
ks_clear
[function]
[call site]
04809
hclose
[function]
[call site]
04810
hts_log
[function]
[call site]
04811
hopen
[function]
[call site]
04812
hclose_abruptly
[function]
[call site]
04813
strlen
[call site]
04814
__errno_location
[call site]
04815
hclose_abruptly
[function]
[call site]
04816
hclose_abruptly
[function]
[call site]
04817
unlink
[call site]
04818
__errno_location
[call site]
04819
strdup
[call site]
04820
idx_read
[function]
[call site]
04821
bgzf_open
[function]
[call site]
04822
ed_is_big
[function]
[call site]
04823
bgzf_read
[function]
[call site]
04824
memcmp
[call site]
04825
bgzf_read
[function]
[call site]
04826
ed_swap_4p
[function]
[call site]
04827
bgzf_read
[function]
[call site]
04828
bgzf_read
[function]
[call site]
04829
ed_swap_4p
[function]
[call site]
04830
hts_idx_init
[function]
[call site]
04831
idx_read_core
[function]
[call site]
04835
ed_is_big
[function]
[call site]
04836
kh_init_bin
[function]
[call site]
04837
bgzf_read
[function]
[call site]
04838
ed_swap_4p
[function]
[call site]
04839
bgzf_read
[function]
[call site]
04840
ed_swap_4p
[function]
[call site]
04841
kh_put_bin
[function]
[call site]
04842
bgzf_read
[function]
[call site]
04843
ed_swap_8p
[function]
[call site]
04844
bgzf_read
[function]
[call site]
04845
ed_swap_4p
[function]
[call site]
04846
bgzf_read
[function]
[call site]
04847
swap_bins
[function]
[call site]
04848
ed_swap_8p
[function]
[call site]
04849
ed_swap_8p
[function]
[call site]
04850
bgzf_read
[function]
[call site]
04851
ed_swap_4p
[function]
[call site]
04852
bgzf_read
[function]
[call site]
04853
ed_swap_8p
[function]
[call site]
04854
update_loff
[function]
[call site]
04855
hts_bin_bot
[function]
[call site]
04856
hts_bin_level
[function]
[call site]
04857
bgzf_read
[function]
[call site]
04858
ed_swap_8p
[function]
[call site]
04859
memcmp
[call site]
04860
bgzf_read
[function]
[call site]
04861
le_to_u32
[function]
[call site]
04862
hts_idx_init
[function]
[call site]
04863
le_to_u32
[function]
[call site]
04864
bgzf_read
[function]
[call site]
04865
idx_read_core
[function]
[call site]
04866
memcmp
[call site]
04867
bgzf_read
[function]
[call site]
04868
ed_swap_4p
[function]
[call site]
04869
hts_idx_init
[function]
[call site]
04870
idx_read_core
[function]
[call site]
04871
__errno_location
[call site]
04872
bgzf_close
[function]
[call site]
04873
bgzf_close
[function]
[call site]
04874
hts_idx_destroy
[function]
[call site]
04875
__errno_location
[call site]
04876
strerror
[call site]
04877
hts_log
[function]
[call site]
04878
hts_idx_check_local
[function]
[call site]
04879
hisremote
[function]
[call site]
04880
strlen
[call site]
04881
strncmp
[call site]
04882
strncmp
[call site]
04883
hts_log
[function]
[call site]
04884
strlen
[call site]
04885
calloc
[call site]
04886
strcpy
[call site]
04887
stat
[call site]
04888
strcpy
[call site]
04889
stat
[call site]
04890
strcpy
[call site]
04891
stat
[call site]
04892
strcpy
[call site]
04893
stat
[call site]
04894
strcpy
[call site]
04895
stat
[call site]
04896
strcpy
[call site]
04897
stat
[call site]
04898
strcpy
[call site]
04899
stat
[call site]
04900
strcpy
[call site]
04901
stat
[call site]
04902
strcpy
[call site]
04903
strcmp
[call site]
04904
strcmp
[call site]
04905
strcpy
[call site]
04906
stat
[call site]
04907
strcpy
[call site]
04908
stat
[call site]
04909
hisremote
[function]
[call site]
04910
idx_filename
[function]
[call site]
04911
haddextension
[function]
[call site]
04912
find_scheme_handler
[function]
[call site]
04913
strncmp
[call site]
04914
strcspn
[call site]
04915
strchr
[call site]
04916
strip_extension
[function]
[call site]
04917
kputsn
[function]
[call site]
04918
kputs
[function]
[call site]
04919
kputs
[function]
[call site]
04920
idx_test_and_fetch
[function]
[call site]
04921
haddextension
[function]
[call site]
04922
idx_test_and_fetch
[function]
[call site]
04923
idx_filename
[function]
[call site]
04924
idx_filename
[function]
[call site]
04925
idx_filename
[function]
[call site]
04926
idx_filename
[function]
[call site]
04927
idx_filename
[function]
[call site]
04928
hts_log
[function]
[call site]
04929
hts_idx_load3
[function]
[call site]
04930
idx_read
[function]
[call site]
04931
hts_idx_get_meta
[function]
[call site]
04932
le_to_i32
[function]
[call site]
04933
le_to_i32
[function]
[call site]
04934
le_to_i32
[function]
[call site]
04935
le_to_i32
[function]
[call site]
04936
le_to_i32
[function]
[call site]
04937
le_to_i32
[function]
[call site]
04938
le_to_u32
[function]
[call site]
04939
get_tid
[function]
[call site]
04940
kh_init_s2i
[function]
[call site]
04941
kh_put_s2i
[function]
[call site]
04942
strdup
[call site]
04943
kh_del_s2i
[function]
[call site]
04944
kh_get_s2i
[function]
[call site]
04945
__errno_location
[call site]
04946
strerror
[call site]
04947
hts_log
[function]
[call site]
04948
strlen
[call site]
04949
hts_log
[function]
[call site]
04950
tbx_destroy
[function]
[call site]
04951
hts_idx_destroy
[function]
[call site]
04952
kh_destroy_s2i
[function]
[call site]
04953
tbx_seqnames
[function]
[call site]
04954
calloc
[call site]
04955
calloc
[call site]
04956
__assert_fail
[call site]
04957
__assert_fail
[call site]
04958
bcf_hdr_get_hrec
[function]
[call site]
04959
add_missing_contig_hrec
[function]
[call site]
04960
calloc
[call site]
04961
strdup
[call site]
04962
bcf_hrec_add_key
[function]
[call site]
04963
strlen
[call site]
04964
bcf_hrec_set_val
[function]
[call site]
04965
bcf_hdr_add_hrec
[function]
[call site]
04966
__errno_location
[call site]
04967
__errno_location
[call site]
04968
strerror
[call site]
04969
hts_log
[function]
[call site]
04970
bcf_hrec_destroy
[function]
[call site]
04971
__errno_location
[call site]
04972
bcf_hdr_sync
[function]
[call site]
04973
tbx_destroy
[function]
[call site]
04974
tbx_destroy
[function]
[call site]
04975
bcf_hdr_destroy
[function]
[call site]
04976
get_hdr_aux
[function]
[call site]
04977
kh_destroy_hdict
[function]
[call site]
04978
kh_destroy_vdict
[function]
[call site]
04979
bcf_hrec_destroy
[function]
[call site]
04980
hts_log
[function]
[call site]
04981
__assert_fail
[call site]
04982
bcf_hdr_init
[function]
[call site]
04983
hts_log
[function]
[call site]
04984
bgzf_read
[function]
[call site]
04985
hts_log
[function]
[call site]
04986
bcf_hdr_destroy
[function]
[call site]
04987
strncmp
[call site]
04988
strncmp
[call site]
04989
hts_log
[function]
[call site]
04990
hts_log
[function]
[call site]
04991
bcf_hdr_destroy
[function]
[call site]
04992
bgzf_read
[function]
[call site]
04993
__errno_location
[call site]
04994
__errno_location
[call site]
04995
bgzf_read
[function]
[call site]
04996
bcf_hdr_parse
[function]
[call site]
04997
bcf_hdr_incr_ref
[function]
[call site]
04998
get_hdr_aux
[function]
[call site]
04999
bgzf_set_private_data
[function]
[call site]
05000
__assert_fail
[call site]
05001
hdr_bgzf_private_data_cleanup
[function]
[call site]
05002
bcf_hdr_decr_ref
[function]
[call site]
05003
get_hdr_aux
[function]
[call site]
05004
bcf_hdr_destroy
[function]
[call site]
05005
hts_log
[function]
[call site]
05006
bcf_hdr_destroy
[function]
[call site]
05007
hts_close_or_abort
[function]
[call site]
05008
hts_close
[function]
[call site]
05009
bcf_hdr_write
[function]
[call site]
05010
__errno_location
[call site]
05011
bcf_hdr_sync
[function]
[call site]
05012
vcf_hdr_write
[function]
[call site]
05013
bcf_hdr_format
[function]
[call site]
05014
_bcf_hrec_format
[function]
[call site]
05015
ksprintf
[function]
[call site]
05016
strcmp
[call site]
05017
kputc
[function]
[call site]
05018
ksprintf
[function]
[call site]
05019
ksprintf
[function]
[call site]
05020
ksprintf
[function]
[call site]
05021
ksprintf
[function]
[call site]
05022
ksprintf
[function]
[call site]
05023
ksprintf
[function]
[call site]
05024
ksprintf
[function]
[call site]
05025
bgzf_write
[function]
[call site]
05026
bgzf_flush
[function]
[call site]
05027
hwrite
[function]
[call site]
05028
bcf_hdr_format
[function]
[call site]
05029
kputc
[function]
[call site]
05030
bgzf_write
[function]
[call site]
05031
u32_to_le
[function]
[call site]
05032
bgzf_write
[function]
[call site]
05033
bgzf_write
[function]
[call site]
05034
bgzf_flush
[function]
[call site]
05035
bcf_hdr_incr_ref
[function]
[call site]
05036
bgzf_set_private_data
[function]
[call site]
05037
hdr_bgzf_private_data_cleanup
[function]
[call site]
05038
bcf_init
[function]
[call site]
05039
calloc
[call site]
05040
bcf_read
[function]
[call site]
05041
vcf_read
[function]
[call site]
05042
hts_getline
[function]
[call site]
05043
vcf_parse
[function]
[call site]
05044
ks_resize
[function]
[call site]
05045
bcf_clear
[function]
[call site]
05046
bcf_float_set
[function]
[call site]
05047
kstrtok
[function]
[call site]
05048
kh_get_vdict
[function]
[call site]
05049
hts_log
[function]
[call site]
05050
fix_chromosome
[function]
[call site]
05051
ksprintf
[function]
[call site]
05052
bcf_hdr_parse_line
[function]
[call site]
05053
bcf_hdr_add_hrec
[function]
[call site]
05054
bcf_hrec_destroy
[function]
[call site]
05055
bcf_hdr_sync
[function]
[call site]
05056
kh_get_vdict
[function]
[call site]
05057
hts_log
[function]
[call site]
05058
kstrtok
[function]
[call site]
05059
hts_str2uint
[function]
[call site]
05060
hts_log
[function]
[call site]
05061
hts_log
[function]
[call site]
05062
kstrtok
[function]
[call site]
05063
memcmp
[call site]
05064
bcf_enc_vchar
[function]
[call site]
05065
bcf_enc_size
[function]
[call site]
05066
ks_resize
[function]
[call site]
05067
ks_resize
[function]
[call site]
05068
i16_to_le
[function]
[call site]
05069
i32_to_le
[function]
[call site]
05070
kputsn
[function]
[call site]
05071
bcf_enc_size
[function]
[call site]
05072
kstrtok
[function]
[call site]
05073
bcf_enc_vchar
[function]
[call site]
05074
kstrtok
[function]
[call site]
05075
memcmp
[call site]
05076
bcf_seqname_safe
[function]
[call site]
05077
bcf_seqname
[function]
[call site]
05078
bcf_hdr_id2name
[function]
[call site]
05079
hts_log
[function]
[call site]
05080
bcf_enc_vchar
[function]
[call site]
05081
kstrtok
[function]
[call site]
05082
memcmp
[call site]
05083
atof
[call site]
05084
bcf_float_set
[function]
[call site]
05085
kstrtok
[function]
[call site]
05086
memcmp
[call site]
05087
vcf_parse_filter
[function]
[call site]
05088
bcf_seqname_safe
[function]
[call site]
05089
hts_log
[function]
[call site]
05090
kstrtok
[function]
[call site]
05091
kh_get_vdict
[function]
[call site]
05092
hts_log
[function]
[call site]
05093
ksprintf
[function]
[call site]
05094
bcf_hdr_parse_line
[function]
[call site]
05095
bcf_hdr_add_hrec
[function]
[call site]
05096
bcf_hrec_destroy
[function]
[call site]
05097
bcf_hdr_sync
[function]
[call site]
05098
kh_get_vdict
[function]
[call site]
05099
bcf_seqname_safe
[function]
[call site]
05100
hts_log
[function]
[call site]
05101
bcf_enc_vint
[function]
[call site]
05102
bcf_enc_size
[function]
[call site]
05103
bcf_enc_int1
[function]
[call site]
05104
ks_resize
[function]
[call site]
05105
i16_to_le
[function]
[call site]
05106
i32_to_le
[function]
[call site]
05107
bcf_enc_size
[function]
[call site]
05108
ks_resize
[function]
[call site]
05109
bcf_enc_size
[function]
[call site]
05110
ks_resize
[function]
[call site]
05111
i16_to_le
[function]
[call site]
05112
bcf_enc_size
[function]
[call site]
05113
ks_resize
[function]
[call site]
05114
i32_to_le
[function]
[call site]
05115
bcf_enc_vint
[function]
[call site]
05116
kstrtok
[function]
[call site]
05117
memcmp
[call site]
05118
vcf_parse_info
[function]
[call site]
05119
bcf_seqname_safe
[function]
[call site]
05120
hts_log
[function]
[call site]
05121
kh_get_vdict
[function]
[call site]
05122
hts_log
[function]
[call site]
05123
ksprintf
[function]
[call site]
05124
bcf_hdr_parse_line
[function]
[call site]
05125
bcf_hdr_add_hrec
[function]
[call site]
05126
bcf_hrec_destroy
[function]
[call site]
05127
bcf_hdr_sync
[function]
[call site]
05128
kh_get_vdict
[function]
[call site]
05129
bcf_seqname_safe
[function]
[call site]
05130
hts_log
[function]
[call site]
05131
bcf_enc_int1
[function]
[call site]
05132
bcf_enc_size
[function]
[call site]
05133
bcf_enc_vchar
[function]
[call site]
05134
realloc
[call site]
05135
bcf_seqname_safe
[function]
[call site]
05136
hts_log
[function]
[call site]
05137
hts_str2int
[function]
[call site]
05138
bcf_seqname_safe
[function]
[call site]
05139
hts_log
[function]
[call site]
05140
bcf_enc_int1
[function]
[call site]
05141
bcf_enc_vint
[function]
[call site]
05142
memcmp
[call site]
05143
bcf_seqname_safe
[function]
[call site]
05144
hts_log
[function]
[call site]
05145
hts_str2dbl
[function]
[call site]
05146
bcf_float_set
[function]
[call site]
05147
bcf_enc_vfloat
[function]
[call site]
05148
__assert_fail
[call site]
05149
bcf_enc_size
[function]
[call site]
05150
serialize_float_array
[function]
[call site]
05151
ks_resize
[function]
[call site]
05152
float_to_le
[function]
[call site]
05153
kstrtok
[function]
[call site]
05154
vcf_parse_format
[function]
[call site]
05155
vcf_parse_format_empty1
[function]
[call site]
05156
bcf_seqname_safe
[function]
[call site]
05157
hts_log
[function]
[call site]
05158
vcf_parse_format_dict2
[function]
[call site]
05159
kstrtok
[function]
[call site]
05160
bcf_seqname_safe
[function]
[call site]
05161
hts_log
[function]
[call site]
05162
kh_get_vdict
[function]
[call site]
05163
bcf_seqname_safe
[function]
[call site]
05164
hts_log
[function]
[call site]
05165
bcf_seqname_safe
[function]
[call site]
05166
hts_log
[function]
[call site]
05167
ksprintf
[function]
[call site]
05168
bcf_hdr_parse_line
[function]
[call site]
05169
bcf_hdr_add_hrec
[function]
[call site]
05170
bcf_hrec_destroy
[function]
[call site]
05171
bcf_hdr_sync
[function]
[call site]
05172
kh_get_vdict
[function]
[call site]
05173
bcf_seqname_safe
[function]
[call site]
05174
hts_log
[function]
[call site]
05175
vcf_parse_format_max3
[function]
[call site]
05176
hts_log
[function]
[call site]
05177
vcf_parse_format_alloc4
[function]
[call site]
05178
bcf_seqname_safe
[function]
[call site]
05179
hts_log
[function]
[call site]
05180
align_mem
[function]
[call site]
05181
kputsn
[function]
[call site]
05182
bcf_seqname_safe
[function]
[call site]
05183
hts_log
[function]
[call site]
05184
bcf_seqname_safe
[function]
[call site]
05185
ks_resize
[function]
[call site]
05186
bcf_seqname_safe
[function]
[call site]
05187
hts_log
[function]
[call site]
05188
bcf_seqname_safe
[function]
[call site]
05189
hts_log
[function]
[call site]
05190
vcf_parse_format_fill5
[function]
[call site]
05191
bcf_get_version
[function]
[call site]
05192
bcf_seqname_safe
[function]
[call site]
05193
hts_log
[function]
[call site]
05194
hts_str2uint
[function]
[call site]
05195
bcf_seqname_safe
[function]
[call site]
05196
hts_log
[function]
[call site]
05197
bcf_seqname_safe
[function]
[call site]
05198
hts_log
[function]
[call site]
05199
hts_str2int
[function]
[call site]
05200
bcf_seqname_safe
[function]
[call site]
05201
hts_log
[function]
[call site]
05202
isdigit_c
[function]
[call site]
05203
bcf_float_set
[function]
[call site]
05204
hts_str2dbl
[function]
[call site]
05205
bcf_seqname
[function]
[call site]
05206
hts_log
[function]
[call site]
05207
bcf_float_set
[function]
[call site]
05208
bcf_float_set
[function]
[call site]
05209
bcf_seqname_safe
[function]
[call site]
05210
hts_log
[function]
[call site]
05211
hts_strprint
[function]
[call site]
05212
bcf_seqname_safe
[function]
[call site]
05213
hts_log
[function]
[call site]
05214
bcf_float_set
[function]
[call site]
05215
bcf_float_set
[function]
[call site]
05216
vcf_parse_format_gt6
[function]
[call site]
05217
bcf_enc_int1
[function]
[call site]
05218
bcf_enc_size
[function]
[call site]
05219
kputsn
[function]
[call site]
05220
bcf_enc_vint
[function]
[call site]
05221
bcf_enc_size
[function]
[call site]
05222
serialize_float_array
[function]
[call site]
05223
bcf_seqname_safe
[function]
[call site]
05224
hts_log
[function]
[call site]
05225
vcf_parse_format_check7
[function]
[call site]
05226
bcf_seqname_safe
[function]
[call site]
05227
hts_log
[function]
[call site]
05228
bcf_seqname_safe
[function]
[call site]
05229
hts_log
[function]
[call site]
05230
get_rlen
[function]
[call site]
05231
bcf_hdr_id2int
[function]
[call site]
05232
svlen_on_ref_for_vcf_alt
[function]
[call site]
05233
strlen
[call site]
05234
memcmp
[call site]
05235
memcmp
[call site]
05236
memcmp
[call site]
05237
memcmp
[call site]
05238
strcmp
[call site]
05239
strcmp
[call site]
05240
strlen
[call site]
05241
bcf_dec_size
[function]
[call site]
05242
bcf_dec_typed_int1
[function]
[call site]
05243
bcf_dec_int1
[function]
[call site]
05244
le_to_i8
[function]
[call site]
05245
le_to_i16
[function]
[call site]
05246
le_to_i32
[function]
[call site]
05247
le_to_i64
[function]
[call site]
05248
le_to_u64
[function]
[call site]
05249
bcf_dec_size
[function]
[call site]
05250
svlen_on_ref_for_vcf_alt
[function]
[call site]
05251
strncmp
[call site]
05252
strncmp
[call site]
05253
bcf_dec_size
[function]
[call site]
05254
bcf_hdr_id2int
[function]
[call site]
05255
bcf_get_info
[function]
[call site]
05256
bcf_hdr_id2int
[function]
[call site]
05257
bcf_get_info_id
[function]
[call site]
05258
bcf_unpack
[function]
[call site]
05259
bcf_fmt_sized_array
[function]
[call site]
05260
bcf_dec_size
[function]
[call site]
05261
bcf_fmt_array
[function]
[call site]
05262
kputc_
[function]
[call site]
05263
memchr
[call site]
05264
kputsn
[function]
[call site]
05265
kputc
[function]
[call site]
05266
le_to_i8
[function]
[call site]
05267
kputc_
[function]
[call site]
05268
kputc
[function]
[call site]
05269
kputw
[function]
[call site]
05270
le_to_i16
[function]
[call site]
05271
kputc_
[function]
[call site]
05272
kputc
[function]
[call site]
05273
kputw
[function]
[call site]
05274
le_to_i32
[function]
[call site]
05275
kputc_
[function]
[call site]
05276
kputc
[function]
[call site]
05277
kputw
[function]
[call site]
05278
le_to_u32
[function]
[call site]
05279
kputc_
[function]
[call site]
05280
kputc
[function]
[call site]
05281
le_to_float
[function]
[call site]
05282
kputd
[function]
[call site]
05283
hts_log
[function]
[call site]
05284
exit
[call site]
05285
kputc_
[function]
[call site]
05286
hts_realloc_or_die
[function]
[call site]
05287
bcf_fmt_sized_array
[function]
[call site]
05288
kputc_
[function]
[call site]
05289
bcf_dec_size
[function]
[call site]
05290
hts_realloc_or_die
[function]
[call site]
05291
bcf_dec_int1
[function]
[call site]
05292
hts_realloc_or_die
[function]
[call site]
05293
bcf_unpack_info_core1
[function]
[call site]
05294
bcf_dec_typed_int1
[function]
[call site]
05295
bcf_dec_size
[function]
[call site]
05296
le_to_i16
[function]
[call site]
05297
le_to_i32
[function]
[call site]
05298
le_to_float
[function]
[call site]
05299
le_to_i64
[function]
[call site]
05300
hts_realloc_or_die
[function]
[call site]
05301
bcf_unpack_fmt_core1
[function]
[call site]
05302
bcf_dec_typed_int1
[function]
[call site]
05303
bcf_dec_size
[function]
[call site]
05304
bcf_get_info
[function]
[call site]
05305
bcf_dec_typed_int1
[function]
[call site]
05306
bcf_unpack_info_core1
[function]
[call site]
05307
bcf_unpack_info_core1
[function]
[call site]
05308
bcf_dec_size
[function]
[call site]
05309
bcf_hdr_id2int
[function]
[call site]
05310
bcf_get_fmt
[function]
[call site]
05311
bcf_hdr_id2int
[function]
[call site]
05312
bcf_get_fmt_id
[function]
[call site]
05313
bcf_unpack
[function]
[call site]
05314
bcf_dec_typed_int1
[function]
[call site]
05315
bcf_unpack_fmt_core1
[function]
[call site]
05316
bcf_dec_size
[function]
[call site]
05317
le_to_i8
[function]
[call site]
05318
le_to_i16
[function]
[call site]
05319
le_to_i32
[function]
[call site]
05320
le_to_i64
[function]
[call site]
05321
le_to_i8
[function]
[call site]
05322
le_to_i16
[function]
[call site]
05323
le_to_i32
[function]
[call site]
05324
le_to_i64
[function]
[call site]
05325
bgzf_get_private_data
[function]
[call site]
05326
__assert_fail
[call site]
05327
bcf_read1_core
[function]
[call site]
05328
bgzf_read
[function]
[call site]
05329
bcf_clear
[function]
[call site]
05330
le_to_u32
[function]
[call site]
05331
le_to_u32
[function]
[call site]
05332
ks_resize
[function]
[call site]
05333
ks_resize
[function]
[call site]
05334
le_to_i32
[function]
[call site]
05335
le_to_u32
[function]
[call site]
05336
le_to_i32
[function]
[call site]
05337
le_to_float
[function]
[call site]
05338
le_to_u16
[function]
[call site]
05339
le_to_u16
[function]
[call site]
05340
le_to_u32
[function]
[call site]
05341
bgzf_read
[function]
[call site]
05342
bgzf_read
[function]
[call site]
05343
bcf_record_check
[function]
[call site]
05344
bcf_get_version
[function]
[call site]
05345
bcf_hdr_id2int
[function]
[call site]
05346
hts_log
[function]
[call site]
05347
bcf_dec_size_safe
[function]
[call site]
05348
bcf_dec_typed_int1_safe
[function]
[call site]
05349
le_to_i16
[function]
[call site]
05350
le_to_i32
[function]
[call site]
05351
bcf_seqname_safe
[function]
[call site]
05352
get_type_name
[function]
[call site]
05353
hts_log
[function]
[call site]
05354
bcf_seqname_safe
[function]
[call site]
05355
hts_log
[function]
[call site]
05356
bcf_dec_size_safe
[function]
[call site]
05357
bcf_seqname_safe
[function]
[call site]
05358
get_type_name
[function]
[call site]
05359
hts_log
[function]
[call site]
05360
bcf_dec_size_safe
[function]
[call site]
05361
bcf_seqname_safe
[function]
[call site]
05362
get_type_name
[function]
[call site]
05363
hts_log
[function]
[call site]
05364
bcf_dec_int1
[function]
[call site]
05365
bcf_seqname_safe
[function]
[call site]
05366
hts_log
[function]
[call site]
05367
bcf_dec_typed_int1_safe
[function]
[call site]
05368
bcf_seqname_safe
[function]
[call site]
05369
hts_log
[function]
[call site]
05370
bcf_dec_size_safe
[function]
[call site]
05371
bcf_seqname_safe
[function]
[call site]
05372
get_type_name
[function]
[call site]
05373
hts_log
[function]
[call site]
05374
bcf_dec_typed_int1_safe
[function]
[call site]
05375
bcf_record_check_err
[function]
[call site]
05376
bcf_seqname_safe
[function]
[call site]
05377
hts_log
[function]
[call site]
05378
bcf_dec_size_safe
[function]
[call site]
05379
bcf_record_check_err
[function]
[call site]
05380
updatephasing
[function]
[call site]
05381
bcf_seqname_safe
[function]
[call site]
05382
hts_log
[function]
[call site]
05383
get_rlen
[function]
[call site]
05384
bcf_seqname_safe
[function]
[call site]
05385
hts_log
[function]
[call site]
05386
bcf_seqname_safe
[function]
[call site]
05387
hts_log
[function]
[call site]
05388
bcf_subset_format
[function]
[call site]
05389
hts_realloc_or_die
[function]
[call site]
05390
bcf_unpack_fmt_core1
[function]
[call site]
05391
bcf_write
[function]
[call site]
05392
bcf_hdr_sync
[function]
[call site]
05393
bcf_seqname_safe
[function]
[call site]
05394
hts_log
[function]
[call site]
05395
vcf_write
[function]
[call site]
05396
vcf_format
[function]
[call site]
05397
bcf_seqname
[function]
[call site]
05398
hts_log
[function]
[call site]
05399
__errno_location
[call site]
05400
bcf_unpack
[function]
[call site]
05401
get_hdr_aux
[function]
[call site]
05402
calloc
[call site]
05403
kputs
[function]
[call site]
05404
kputc_
[function]
[call site]
05405
kputll
[function]
[call site]
05406
kputc_
[function]
[call site]
05407
kputs
[function]
[call site]
05408
kputc_
[function]
[call site]
05409
kputs
[function]
[call site]
05410
kputc_
[function]
[call site]
05411
kputc_
[function]
[call site]
05412
kputc_
[function]
[call site]
05413
kputs
[function]
[call site]
05414
kputc_
[function]
[call site]
05415
kputc_
[function]
[call site]
05416
bcf_float_is_missing
[function]
[call site]
05417
kputc_
[function]
[call site]
05418
kputd
[function]
[call site]
05419
kputc_
[function]
[call site]
05420
bcf_seqname_safe
[function]
[call site]
05421
hts_log
[function]
[call site]
05422
__errno_location
[call site]
05423
kputc_
[function]
[call site]
05424
strlen
[call site]
05425
kputsn
[function]
[call site]
05426
kputc_
[function]
[call site]
05427
bcf_dec_typed_int1
[function]
[call site]
05428
bcf_dec_size
[function]
[call site]
05429
bcf_seqname_safe
[function]
[call site]
05430
hts_log
[function]
[call site]
05431
__errno_location
[call site]
05432
strlen
[call site]
05433
ks_resize
[function]
[call site]
05434
bcf_fmt_array
[function]
[call site]
05435
bcf_float_is_missing
[function]
[call site]
05436
kputc_
[function]
[call site]
05437
kputd
[function]
[call site]
05438
kputc_
[function]
[call site]
05439
kputc_
[function]
[call site]
05440
kputw
[function]
[call site]
05441
kputc_
[function]
[call site]
05442
kputll
[function]
[call site]
05443
bcf_seqname_safe
[function]
[call site]
05444
hts_log
[function]
[call site]
05445
__errno_location
[call site]
05446
kputc_
[function]
[call site]
05447
kputc_
[function]
[call site]
05448
bcf_dec_typed_int1
[function]
[call site]
05449
bcf_dec_size
[function]
[call site]
05450
kputc_
[function]
[call site]
05451
bcf_seqname_safe
[function]
[call site]
05452
hts_log
[function]
[call site]
05453
__errno_location
[call site]
05454
strlen
[call site]
05455
kputsn
[function]
[call site]
05456
kputsn
[function]
[call site]
05457
kputc_
[function]
[call site]
05458
bcf_format_gt_v2
[function]
[call site]
05459
le_to_i8
[function]
[call site]
05460
kputc
[function]
[call site]
05461
kputw
[function]
[call site]
05462
le_to_i16
[function]
[call site]
05463
kputc
[function]
[call site]
05464
kputw
[function]
[call site]
05465
le_to_i32
[function]
[call site]
05466
kputc
[function]
[call site]
05467
kputw
[function]
[call site]
05468
kputc
[function]
[call site]
05469
hts_log
[function]
[call site]
05470
get_hdr_aux
[function]
[call site]
05471
kinsert_char
[function]
[call site]
05472
ks_resize
[function]
[call site]
05473
kinsert_char
[function]
[call site]
05474
kinsert_char
[function]
[call site]
05475
hts_log
[function]
[call site]
05476
__errno_location
[call site]
05477
bcf_fmt_array1
[function]
[call site]
05478
kputc_
[function]
[call site]
05479
kputc_
[function]
[call site]
05480
kputw
[function]
[call site]
05481
le_to_i16
[function]
[call site]
05482
kputc_
[function]
[call site]
05483
kputw
[function]
[call site]
05484
le_to_i32
[function]
[call site]
05485
kputc_
[function]
[call site]
05486
kputw
[function]
[call site]
05487
le_to_u32
[function]
[call site]
05488
kputc_
[function]
[call site]
05489
le_to_float
[function]
[call site]
05490
kputd
[function]
[call site]
05491
hts_log
[function]
[call site]
05492
bcf_fmt_array
[function]
[call site]
05493
kputc_
[function]
[call site]
05494
bcf_fmt_array1
[function]
[call site]
05495
bcf_fmt_array
[function]
[call site]
05496
kputsn
[function]
[call site]
05497
kputc
[function]
[call site]
05498
bgzf_flush_try
[function]
[call site]
05499
hts_idx_amend_last
[function]
[call site]
05500
bgzf_write
[function]
[call site]
05501
hwrite
[function]
[call site]
05502
bcf_seqname_safe
[function]
[call site]
05503
hts_idx_tbi_name
[function]
[call site]
05504
strlen
[call site]
05505
realloc
[call site]
05506
strcpy
[call site]
05507
le_to_u32
[function]
[call site]
05508
u32_to_le
[function]
[call site]
05509
bgzf_idx_push
[function]
[call site]
05510
bcf_strerror
[function]
[call site]
05511
add_desc_to_buffer
[function]
[call site]
05512
add_desc_to_buffer
[function]
[call site]
05516
bcf_seqname_safe
[function]
[call site]
05517
hts_log
[function]
[call site]
05518
bcf1_sync
[function]
[call site]
05519
bcf1_sync_id
[function]
[call site]
05520
strcmp
[call site]
05521
strlen
[call site]
05522
bcf_enc_vchar
[function]
[call site]
05523
bcf_enc_size
[function]
[call site]
05524
bcf1_sync_alleles
[function]
[call site]
05525
bcf1_sync_filter
[function]
[call site]
05529
bcf_enc_vint
[function]
[call site]
05530
bcf_enc_vint
[function]
[call site]
05531
bcf1_sync_info
[function]
[call site]
05532
kputsn_
[function]
[call site]
05533
bcf_unpack
[function]
[call site]
05534
bcf1_sync_id
[function]
[call site]
05535
kputsn_
[function]
[call site]
05536
bcf1_sync_alleles
[function]
[call site]
05537
kputsn_
[function]
[call site]
05538
strlen
[call site]
05539
bcf1_sync_filter
[function]
[call site]
05540
kputsn_
[function]
[call site]
05541
bcf_enc_vint
[function]
[call site]
05542
bcf1_sync_info
[function]
[call site]
05543
kputsn_
[function]
[call site]
05544
kputsn_
[function]
[call site]
05545
bcf_seqname_safe
[function]
[call site]
05546
hts_log
[function]
[call site]
05547
u32_to_le
[function]
[call site]
05548
u32_to_le
[function]
[call site]
05549
i32_to_le
[function]
[call site]
05550
u32_to_le
[function]
[call site]
05551
u32_to_le
[function]
[call site]
05552
float_to_le
[function]
[call site]
05553
u16_to_le
[function]
[call site]
05554
u16_to_le
[function]
[call site]
05555
u32_to_le
[function]
[call site]
05556
bgzf_write
[function]
[call site]
05557
bgzf_write
[function]
[call site]
05558
bgzf_write
[function]
[call site]
05559
bgzf_idx_push
[function]
[call site]
05560
bcf_destroy
[function]
[call site]
05561
bcf_empty
[function]
[call site]
05562
bcf_clear
[function]
[call site]
05563
bcf_hdr_destroy
[function]
[call site]
05564
hts_close_or_abort
[function]
[call site]
05565
hts_close
[function]
[call site]
05566
view_vcf
[function]
[call site]
05567