The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 234 | 4053 | hts_str2dbl | call site: 04053 | bam_sym_lookup |
| 142 | 1548 | hts_hopen | call site: 01548 | hts_process_opts |
| 110 | 4764 | idx_find_and_load | call site: 04764 | hts_idx_load3 |
| 79 | 2543 | zlib_mem_deflate | call site: 02543 | fqz_compress |
| 77 | 3919 | sam_parse1 | call site: 03919 | sam_dispatcher_read |
| 75 | 3029 | cram_decode_slice | call site: 03029 | cram_get_ref |
| 69 | 1477 | refs2id | call site: 01477 | hts_tpool_init |
| 67 | 2696 | rans_compress_to_4x16 | call site: 02696 | arith_compress_to |
| 64 | 4906 | idx_find_and_load | call site: 04906 | hts_idx_load3 |
| 62 | 1790 | sam_format1_append | call site: 01790 | hts_set_opt |
| 51 | 1048 | hwrite | call site: 01048 | bgzf_close_mt |
| 51 | 4407 | cram_put_bam_seq | call site: 04407 | sam_dispatcher_write |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
realloc
[call site]
00024
__ac_FNV1a_hash_string
[function]
[call site]
00025
strcmp
[call site]
00026
__errno_location
[call site]
00027
strerror
[call site]
00028
hts_log
[function]
[call site]
00029
priority
[function]
[call site]
00030
hfile_add_scheme_handler
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
init_add_plugin
[function]
[call site]
00033
hts_log
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hfile_plugin_init_mem
[function]
[call site]
00037
hfile_add_scheme_handler
[function]
[call site]
00038
init_add_plugin
[function]
[call site]
00039
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00040
hfile_add_scheme_handler
[function]
[call site]
00041
init_add_plugin
[function]
[call site]
00042
hfile_plugin_init_libcurl
[function]
[call site]
00043
hts_version
[function]
[call site]
00044
curl_global_init
[call site]
00045
easy_errno
[function]
[call site]
00046
curl_easy_getinfo
[call site]
00047
curl_easy_getinfo
[call site]
00048
http_status_errno
[function]
[call site]
00049
curl_easy_strerror
[call site]
00050
hts_log
[function]
[call site]
00051
__errno_location
[call site]
00052
curl_share_init
[call site]
00053
curl_global_cleanup
[call site]
00054
__errno_location
[call site]
00055
curl_share_setopt
[call site]
00056
share_lock
[function]
[call site]
00057
pthread_mutex_lock
[call site]
00058
curl_share_setopt
[call site]
00059
share_unlock
[function]
[call site]
00060
pthread_mutex_unlock
[call site]
00061
curl_share_setopt
[call site]
00062
curl_share_cleanup
[call site]
00063
curl_global_cleanup
[call site]
00064
__errno_location
[call site]
00065
getenv
[call site]
00066
strdup
[call site]
00067
kh_init_auth_map
[function]
[call site]
00068
calloc
[call site]
00069
__errno_location
[call site]
00070
kh_destroy_auth_map
[function]
[call site]
00071
curl_share_cleanup
[call site]
00072
curl_global_cleanup
[call site]
00073
__errno_location
[call site]
00074
getenv
[call site]
00075
strcmp
[call site]
00076
curl_version_info
[call site]
00077
ksprintf
[function]
[call site]
00078
kvsprintf
[function]
[call site]
00079
kputd
[function]
[call site]
00080
kputsn
[function]
[call site]
00081
__errno_location
[call site]
00082
ks_resize
[function]
[call site]
00083
realloc
[call site]
00084
kputsn
[function]
[call site]
00085
kputc
[function]
[call site]
00086
ks_resize
[function]
[call site]
00087
ks_resize
[function]
[call site]
00088
snprintf
[call site]
00089
kputsn
[function]
[call site]
00090
vsnprintf
[call site]
00091
ks_resize
[function]
[call site]
00092
vsnprintf
[call site]
00093
hfile_add_scheme_handler
[function]
[call site]
00094
init_add_plugin
[function]
[call site]
00095
hfile_plugin_init_gcs
[function]
[call site]
00096
hfile_add_scheme_handler
[function]
[call site]
00097
hfile_add_scheme_handler
[function]
[call site]
00098
hfile_add_scheme_handler
[function]
[call site]
00099
init_add_plugin
[function]
[call site]
00100
hfile_plugin_init_s3
[function]
[call site]
00101
hts_version
[function]
[call site]
00102
curl_global_init
[call site]
00103
curl_share_init
[call site]
00104
curl_global_cleanup
[call site]
00105
__errno_location
[call site]
00106
curl_share_setopt
[call site]
00107
share_lock
[function]
[call site]
00108
pthread_mutex_lock
[call site]
00109
curl_share_setopt
[call site]
00110
share_unlock
[function]
[call site]
00111
pthread_mutex_unlock
[call site]
00112
curl_share_setopt
[call site]
00113
curl_share_cleanup
[call site]
00114
curl_global_cleanup
[call site]
00115
__errno_location
[call site]
00116
curl_version_info
[call site]
00117
ksprintf
[function]
[call site]
00118
hfile_add_scheme_handler
[function]
[call site]
00119
hfile_add_scheme_handler
[function]
[call site]
00120
hfile_add_scheme_handler
[function]
[call site]
00121
atexit
[call site]
00122
hfile_exit
[function]
[call site]
00123
hfile_shutdown
[function]
[call site]
00124
pthread_mutex_lock
[call site]
00125
kh_destroy_scheme_string
[function]
[call site]
00126
pthread_mutex_unlock
[call site]
00127
pthread_mutex_destroy
[call site]
00128
pthread_mutex_unlock
[call site]
00129
pthread_mutex_unlock
[call site]
00130
kh_get_scheme_string
[function]
[call site]
00131
strchr
[call site]
00132
strcmp
[call site]
00133
hopen_fd_stdinout
[function]
[call site]
00134
strchr
[call site]
00135
snprintf
[call site]
00136
hdopen
[function]
[call site]
00137
blksize
[function]
[call site]
00138
fstat
[call site]
00139
hfile_init
[function]
[call site]
00140
strchr
[call site]
00141
posix_memalign
[call site]
00142
strchr
[call site]
00143
hfile_destroy
[function]
[call site]
00144
__errno_location
[call site]
00145
__errno_location
[call site]
00146
strchr
[call site]
00147
strchr
[call site]
00148
hopen_fd
[function]
[call site]
00149
hfile_oflags
[function]
[call site]
00150
open
[call site]
00151
blksize
[function]
[call site]
00152
hfile_init
[function]
[call site]
00153
__errno_location
[call site]
00154
close
[call site]
00155
hfile_destroy
[function]
[call site]
00156
hts_hopen
[function]
[call site]
00157
calloc
[call site]
00158
strdup
[call site]
00159
ed_is_big
[function]
[call site]
00160
strchr
[call site]
00161
strncpy
[call site]
00162
strncpy
[call site]
00163
strchr
[call site]
00164
hts_detect_format2
[function]
[call site]
00165
hpeek
[function]
[call site]
00166
refill_buffer
[function]
[call site]
00167
__errno_location
[call site]
00168
memcmp
[call site]
00169
memcmp
[call site]
00170
decompress_peek_gz
[function]
[call site]
00171
hpeek
[function]
[call site]
00172
inflateInit2_
[call site]
00173
inflate
[call site]
00174
inflateReset
[call site]
00175
inflateEnd
[call site]
00176
memcmp
[call site]
00177
memcmp
[call site]
00178
memcmp
[call site]
00179
memcmp
[call site]
00180
decompress_peek_xz
[function]
[call site]
00181
hpeek
[function]
[call site]
00182
lzma_easy_decoder_memusage
[call site]
00183
lzma_stream_decoder
[call site]
00184
lzma_code
[call site]
00185
lzma_end
[call site]
00186
lzma_end
[call site]
00187
memcmp
[call site]
00188
hpeek
[function]
[call site]
00189
strcmp
[call site]
00190
find_file_extension
[function]
[call site]
00191
strstr
[call site]
00192
strlen
[call site]
00193
tolower_c
[function]
[call site]
00194
memcmp
[call site]
00195
memcmp
[call site]
00196
memcmp
[call site]
00197
memcmp
[call site]
00198
memcmp
[call site]
00199
memcmp
[call site]
00200
memcmp
[call site]
00201
strcmp
[call site]
00202
memcmp
[call site]
00203
parse_version
[function]
[call site]
00204
isdigit_c
[function]
[call site]
00205
__ctype_b_loc
[call site]
00206
isdigit_c
[function]
[call site]
00207
memcmp
[call site]
00208
memcmp
[call site]
00209
memcmp
[call site]
00210
memcmp
[call site]
00211
parse_version
[function]
[call site]
00212
memcmp
[call site]
00213
cmp_nonblank
[function]
[call site]
00214
isspace_c
[function]
[call site]
00215
__ctype_b_loc
[call site]
00216
memcmp
[call site]
00217
is_fastaq
[function]
[call site]
00218
is_fastaq
[function]
[call site]
00222
parse_tabbed_text
[function]
[call site]
00223
isdigit_c
[function]
[call site]
00224
strchr
[call site]
00225
isdigit_c
[function]
[call site]
00226
colmatch
[function]
[call site]
00227
colmatch
[function]
[call site]
00228
strstr
[call site]
00229
colmatch
[function]
[call site]
00230
strstr
[call site]
00231
colmatch
[function]
[call site]
00232
colmatch
[function]
[call site]
00233
is_text_only
[function]
[call site]
00234
__errno_location
[call site]
00235
hopen_htsget_redirect
[function]
[call site]
00236
hfile_init
[function]
[call site]
00237
parse_ga4gh_redirect_json
[function]
[call site]
00238
hts_json_fnext
[function]
[call site]
00239
hgetc
[function]
[call site]
00240
hgetc2
[function]
[call site]
00241
refill_buffer
[function]
[call site]
00242
fscan_string
[function]
[call site]
00243
hgetc
[function]
[call site]
00244
hgetc
[function]
[call site]
00245
kputc
[function]
[call site]
00246
kputc
[function]
[call site]
00247
kputc
[function]
[call site]
00248
kputc
[function]
[call site]
00249
kputc
[function]
[call site]
00250
kputc
[function]
[call site]
00251
hgetc
[function]
[call site]
00252
dehex
[function]
[call site]
00253
hgetc
[function]
[call site]
00254
dehex
[function]
[call site]
00255
hgetc
[function]
[call site]
00256
dehex
[function]
[call site]
00257
hgetc
[function]
[call site]
00258
dehex
[function]
[call site]
00259
encode_utf8
[function]
[call site]
00260
kputsn
[function]
[call site]
00261
kputc
[function]
[call site]
00262
kputsn
[function]
[call site]
00263
kputc
[function]
[call site]
00264
hpeek
[function]
[call site]
00265
strchr
[call site]
00266
hgetc
[function]
[call site]
00267
kputc
[function]
[call site]
00268
token_type
[function]
[call site]
00269
hts_json_fnext
[function]
[call site]
00273
strcmp
[call site]
00274
parse_ga4gh_body_json
[function]
[call site]
00275
hts_json_fnext
[function]
[call site]
00276
hts_json_fnext
[function]
[call site]
00277
strcmp
[call site]
00278
hts_json_fnext
[function]
[call site]
00279
hts_json_fnext
[function]
[call site]
00280
hts_realloc_or_die
[function]
[call site]
00281
__errno_location
[call site]
00282
realloc
[call site]
00283
__errno_location
[call site]
00284
strerror
[call site]
00285
hts_log
[function]
[call site]
00286
exit
[call site]
00287
hts_json_fnext
[function]
[call site]
00288
strcmp
[call site]
00289
hts_json_fnext
[function]
[call site]
00290
ks_release
[function]
[call site]
00291
strcmp
[call site]
00292
hts_json_fnext
[function]
[call site]
00293
hts_json_fnext
[function]
[call site]
00294
hts_json_fnext
[function]
[call site]
00295
kputs
[function]
[call site]
00296
__errno_location
[call site]
00297
strlen
[call site]
00298
kputsn
[function]
[call site]
00299
kputs
[function]
[call site]
00300
hts_realloc_or_die
[function]
[call site]
00301
ks_release
[function]
[call site]
00302
hts_json_fskip_value
[function]
[call site]
00303
skip_value
[function]
[call site]
00304
fnext
[function]
[call site]
00305
hts_json_fnext
[function]
[call site]
00306
strcmp
[call site]
00307
hts_json_fnext
[function]
[call site]
00308
hts_log
[function]
[call site]
00309
hts_json_fskip_value
[function]
[call site]
00310
hts_json_fnext
[function]
[call site]
00311
free_all_parts
[function]
[call site]
00312
free_part
[function]
[call site]
00313
hfile_destroy
[function]
[call site]
00314
__errno_location
[call site]
00315
hclose_abruptly
[function]
[call site]
00316
__errno_location
[call site]
00317
hfile_destroy
[function]
[call site]
00318
__errno_location
[call site]
00319
hts_crypt4gh_redirect
[function]
[call site]
00320
strlen
[call site]
00321
snprintf
[call site]
00322
strchr
[call site]
00323
snprintf
[call site]
00324
hopen
[function]
[call site]
00325
hts_detect_format2
[function]
[call site]
00326
strchr
[call site]
00327
strchr
[call site]
00328
strchr
[call site]
00329
strchr
[call site]
00330
strchr
[call site]
00331
strchr
[call site]
00332
strchr
[call site]
00333
strchr
[call site]
00334
abort
[call site]
00335
format_category
[function]
[call site]
00336
__errno_location
[call site]
00337
bgzf_hopen
[function]
[call site]
00338
strchr
[call site]
00339
bgzf_read_init
[function]
[call site]
00340
hpeek
[function]
[call site]
00341
calloc
[call site]
00342
memcmp
[call site]
00343
memcmp
[call site]
00344
hts_log
[function]
[call site]
00345
razf_info
[function]
[call site]
00346
strcmp
[call site]
00347
hseek
[function]
[call site]
00348
writebuffer_is_nonempty
[function]
[call site]
00349
flush_buffer
[function]
[call site]
00350
__errno_location
[call site]
00351
htell
[function]
[call site]
00352
__errno_location
[call site]
00353
__errno_location
[call site]
00354
__errno_location
[call site]
00355
hread
[function]
[call site]
00356
hread2
[function]
[call site]
00357
__errno_location
[call site]
00358
refill_buffer
[function]
[call site]
00359
ed_is_big
[function]
[call site]
00360
ed_swap_8p
[function]
[call site]
00361
ed_swap_8
[function]
[call site]
00362
hts_log
[function]
[call site]
00363
hts_log
[function]
[call site]
00364
__errno_location
[call site]
00365
kh_init_bgzf_cache
[function]
[call site]
00366
calloc
[call site]
00367
strchr
[call site]
00368
bgzf_write_init
[function]
[call site]
00369
calloc
[call site]
00370
mode2level
[function]
[call site]
00371
strchr
[call site]
00372
strchr
[call site]
00373
calloc
[call site]
00374
deflateInit2_
[call site]
00375
bgzf_zerr
[function]
[call site]
00376
hts_log
[function]
[call site]
00380
__errno_location
[call site]
00381
strerror
[call site]
00382
hts_log
[function]
[call site]
00383
__errno_location
[call site]
00384
ed_is_big
[function]
[call site]
00385
cram_dopen
[function]
[call site]
00386
calloc
[call site]
00387
cram_read_file_def
[function]
[call site]
00388
hread
[function]
[call site]
00389
memcmp
[call site]
00390
hts_log
[function]
[call site]
00391
cram_init_tables
[function]
[call site]
00392
cram_init_varint
[function]
[call site]
00393
cram_read_SAM_hdr
[function]
[call site]
00394
int32_decode
[function]
[call site]
00395
hread
[function]
[call site]
00396
hread
[function]
[call site]
00397
cram_read_container
[function]
[call site]
00398
int32_decode
[function]
[call site]
00399
crc32
[call site]
00400
calloc
[call site]
00401
__errno_location
[call site]
00402
cram_free_container
[function]
[call site]
00403
cram_free_compression_header
[function]
[call site]
00404
kh_destroy_map
[function]
[call site]
00405
cram_free_block
[function]
[call site]
00406
kh_destroy_m_s2i
[function]
[call site]
00407
string_pool_destroy
[function]
[call site]
00408
cram_free_block
[function]
[call site]
00409
cram_free_slice
[function]
[call site]
00410
cram_free_block
[function]
[call site]
00411
cram_free_block
[function]
[call site]
00412
cram_free_block
[function]
[call site]
00413
cram_free_slice_header
[function]
[call site]
00414
cram_free_block
[function]
[call site]
00415
cram_free_block
[function]
[call site]
00416
cram_free_block
[function]
[call site]
00417
cram_free_block
[function]
[call site]
00418
cram_free_block
[function]
[call site]
00419
cram_free_block
[function]
[call site]
00420
string_pool_destroy
[function]
[call site]
00421
kh_destroy_m_s2i
[function]
[call site]
00422
kh_destroy_m_s2i
[function]
[call site]
00423
cram_free_slice
[function]
[call site]
00424
cram_stats_free
[function]
[call site]
00425
kh_destroy_m_i2i
[function]
[call site]
00426
cram_free_block
[function]
[call site]
00427
cram_free_block
[function]
[call site]
00428
kh_destroy_m_tagmap
[function]
[call site]
00429
free_bam_list
[function]
[call site]
00430
bam_destroy1
[function]
[call site]
00431
bam_get_mempolicy
[function]
[call site]
00432
bam_get_mempolicy
[function]
[call site]
00433
bam_get_mempolicy
[function]
[call site]
00434
__errno_location
[call site]
00435
cram_free_container
[function]
[call site]
00436
cram_free_container
[function]
[call site]
00437
int32_decode
[function]
[call site]
00438
cram_free_container
[function]
[call site]
00439
hts_log
[function]
[call site]
00440
cram_free_container
[function]
[call site]
00441
cram_free_container
[function]
[call site]
00442
cram_read_block
[function]
[call site]
00443
hgetc
[function]
[call site]
00444
crc32
[call site]
00445
hgetc
[function]
[call site]
00446
crc32
[call site]
00447
hread
[function]
[call site]
00448
hread
[function]
[call site]
00449
int32_decode
[function]
[call site]
00450
cram_free_container
[function]
[call site]
00451
cram_uncompress_block
[function]
[call site]
00452
crc32
[call site]
00453
hts_log
[function]
[call site]
00454
__assert_fail
[call site]
00455
zlib_mem_inflate
[function]
[call site]
00456
inflateInit2_
[call site]
00457
hts_log
[function]
[call site]
00458
inflate
[call site]
00459
hts_log
[function]
[call site]
00460
inflateEnd
[call site]
00461
realloc
[call site]
00462
inflateEnd
[call site]
00463
inflateEnd
[call site]
00464
BZ2_bzBuffToBuffDecompress
[call site]
00465
lzma_mem_inflate
[function]
[call site]
00466
lzma_easy_decoder_memusage
[call site]
00467
lzma_stream_decoder
[call site]
00468
realloc
[call site]
00469
lzma_code
[call site]
00470
hts_log
[function]
[call site]
00471
lzma_code
[call site]
00472
hts_log
[function]
[call site]
00473
realloc
[call site]
00474
lzma_end
[call site]
00475
lzma_end
[call site]
00476
rans_uncompress
[function]
[call site]
00477
rans_uncompress_O1
[function]
[call site]
00478
htscodecs_tls_calloc
[function]
[call site]
00479
htscodecs_tls_alloc
[function]
[call site]
00480
pthread_once
[call site]
00481
htscodecs_tls_init
[function]
[call site]
00482
pthread_key_create
[call site]
00483
htscodecs_tls_free_all
[function]
[call site]
00484
fprintf
[call site]
00485
strerror
[call site]
00486
fprintf
[call site]
00487
pthread_getspecific
[call site]
00488
calloc
[call site]
00489
pthread_setspecific
[call site]
00490
fprintf
[call site]
00491
calloc
[call site]
00492
RansDecSymbolInit32
[function]
[call site]
00493
__assert_fail
[call site]
00494
__assert_fail
[call site]
00495
RansDecInit
[function]
[call site]
00496
RansDecInit
[function]
[call site]
00497
RansDecInit
[function]
[call site]
00498
RansDecInit
[function]
[call site]
00499
RansDecAdvanceStep
[function]
[call site]
00500
RansDecAdvanceStep
[function]
[call site]
00501
RansDecAdvanceStep
[function]
[call site]
00502
RansDecAdvanceStep
[function]
[call site]
00503
RansDecRenorm2
[function]
[call site]
00504
RansDecRenorm2
[function]
[call site]
00505
RansDecRenormSafe
[function]
[call site]
00506
RansDecRenormSafe
[function]
[call site]
00507
RansDecRenormSafe
[function]
[call site]
00508
RansDecRenormSafe
[function]
[call site]
00509
RansDecGet
[function]
[call site]
00510
RansDecRenormSafe
[function]
[call site]
00511
htscodecs_tls_free
[function]
[call site]
00512
rans_uncompress_O0
[function]
[call site]
00516
RansDecInit
[function]
[call site]
00517
RansDecInit
[function]
[call site]
00518
RansDecInit
[function]
[call site]
00519
RansDecInit
[function]
[call site]
00520
RansDecRenorm2
[function]
[call site]
00521
RansDecRenorm2
[function]
[call site]
00522
RansDecRenormSafe
[function]
[call site]
00523
RansDecRenormSafe
[function]
[call site]
00524
RansDecRenormSafe
[function]
[call site]
00525
RansDecRenormSafe
[function]
[call site]
00526
fqz_decompress
[function]
[call site]
00527
uncompress_block_fqz2f
[function]
[call site]
00528
var_get_u32
[function]
[call site]
00529
fqz_read_parameters
[function]
[call site]
00530
read_array
[function]
[call site]
00531
fqz_read_parameters1
[function]
[call site]
00532
read_array
[function]
[call site]
00533
read_array
[function]
[call site]
00534
read_array
[function]
[call site]
00535
fqz_free_parameters
[function]
[call site]
00536
fqz_create_models
[function]
[call site]
00537
htscodecs_tls_alloc
[function]
[call site]
00538
SIMPLE_MODEL256_init
[function]
[call site]
00539
SIMPLE_MODEL256_init
[function]
[call site]
00540
SIMPLE_MODEL2_init
[function]
[call site]
00541
SIMPLE_MODEL2_init
[function]
[call site]
00542
SIMPLE_MODEL256_init
[function]
[call site]
00543
RC_SetInput
[function]
[call site]
00544
RC_StartDecode
[function]
[call site]
00545
realloc
[call site]
00546
realloc
[call site]
00547
decompress_new_read
[function]
[call site]
00548
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00549
RC_GetFreq
[function]
[call site]
00550
RC_Decode
[function]
[call site]
00551
SIMPLE_MODEL256_normalize
[function]
[call site]
00552
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00553
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00554
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00555
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00556
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00557
SIMPLE_MODEL2_normalize
[function]
[call site]
00558
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00559
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00560
fqz_update_ctx
[function]
[call site]
00561
realloc
[call site]
00562
realloc
[call site]
00563
RC_FinishDecode
[function]
[call site]
00564
fqz_destroy_models
[function]
[call site]
00565
htscodecs_tls_free
[function]
[call site]
00566
fqz_free_parameters
[function]
[call site]
00567
fqz_destroy_models
[function]
[call site]
00568
fqz_free_parameters
[function]
[call site]
00569
rans_uncompress_4x16
[function]
[call site]
00570
rans_uncompress_to_4x16
[function]
[call site]
00571
var_get_u32
[function]
[call site]
00572
var_get_u32
[function]
[call site]
00573
rans_uncompress_to_4x16
[function]
[call site]
00574
unstripe
[function]
[call site]
00575
var_get_u32
[function]
[call site]
00576
hts_unpack_meta
[function]
[call site]
00577
var_get_u32
[function]
[call site]
00578
var_get_u32
[function]
[call site]
00579
var_get_u32
[function]
[call site]
00580
var_get_u32
[function]
[call site]
00581
rans_dec_func
[function]
[call site]
00582
pthread_once
[call site]
00583
htscodecs_tls_cpu_init
[function]
[call site]
00584
__get_cpuid_max
[function]
[call site]
00585
not_ancient_darwin
[function]
[call site]
00586
strerror
[call site]
00587
fprintf
[call site]
00588
fprintf
[call site]
00589
rans_dec_func
[function]
[call site]
00590
hts_rle_decode
[function]
[call site]
00591
var_get_u32
[function]
[call site]
00592
hts_unpack
[function]
[call site]
00593
arith_uncompress_to
[function]
[call site]
00594
var_get_u32
[function]
[call site]
00595
var_get_u32
[function]
[call site]
00596
arith_uncompress_to
[function]
[call site]
00597
unstripe
[function]
[call site]
00598
var_get_u32
[function]
[call site]
00599
hts_unpack_meta
[function]
[call site]
00600
var_get_u32
[function]
[call site]
00601
BZ2_bzBuffToBuffDecompress
[call site]
00602
arith_uncompress_O1_RLE
[function]
[call site]
00603
htscodecs_tls_alloc
[function]
[call site]
00604
SIMPLE_MODEL256_init
[function]
[call site]
00605
htscodecs_tls_alloc
[function]
[call site]
00606
htscodecs_tls_free
[function]
[call site]
00607
SIMPLE_MODEL258_init
[function]
[call site]
00608
RC_SetInput
[function]
[call site]
00609
RC_StartDecode
[function]
[call site]
00610
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00611
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00612
SIMPLE_MODEL258_normalize
[function]
[call site]
00613
RC_FinishDecode
[function]
[call site]
00614
htscodecs_tls_free
[function]
[call site]
00615
htscodecs_tls_free
[function]
[call site]
00616
htscodecs_tls_free
[function]
[call site]
00617
htscodecs_tls_free
[function]
[call site]
00618
arith_uncompress_O0_RLE
[function]
[call site]
00619
SIMPLE_MODEL256_init
[function]
[call site]
00620
htscodecs_tls_alloc
[function]
[call site]
00621
SIMPLE_MODEL258_init
[function]
[call site]
00622
RC_SetInput
[function]
[call site]
00623
RC_StartDecode
[function]
[call site]
00624
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00625
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00626
RC_FinishDecode
[function]
[call site]
00627
htscodecs_tls_free
[function]
[call site]
00628
htscodecs_tls_free
[function]
[call site]
00629
arith_uncompress_O1
[function]
[call site]
00630
htscodecs_tls_alloc
[function]
[call site]
00631
SIMPLE_MODEL256_init
[function]
[call site]
00632
RC_SetInput
[function]
[call site]
00633
RC_StartDecode
[function]
[call site]
00634
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00635
RC_FinishDecode
[function]
[call site]
00636
htscodecs_tls_free
[function]
[call site]
00637
htscodecs_tls_free
[function]
[call site]
00638
arith_uncompress_O0
[function]
[call site]
00639
SIMPLE_MODEL256_init
[function]
[call site]
00640
RC_SetInput
[function]
[call site]
00641
RC_StartDecode
[function]
[call site]
00642
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00643
RC_FinishDecode
[function]
[call site]
00644
hts_unpack
[function]
[call site]
00645
tok3_decode_names
[function]
[call site]
00646
create_context
[function]
[call site]
00647
fprintf
[call site]
00648
htscodecs_tls_alloc
[function]
[call site]
00649
uncompressed_size
[function]
[call site]
00650
var_get_u32
[function]
[call site]
00651
var_get_u32
[function]
[call site]
00652
uncompress
[function]
[call site]
00653
var_get_u32
[function]
[call site]
00654
arith_decode
[function]
[call site]
00655
var_get_u32
[function]
[call site]
00656
arith_uncompress_to
[function]
[call site]
00657
rans_decode
[function]
[call site]
00658
var_get_u32
[function]
[call site]
00659
rans_uncompress_to_4x16
[function]
[call site]
00660
decode_name
[function]
[call site]
00661
decode_token_type
[function]
[call site]
00662
decode_token_int
[function]
[call site]
00663
strlen
[call site]
00664
strcpy
[call site]
00665
strlen
[call site]
00666
decode_token_type
[function]
[call site]
00667
decode_token_char
[function]
[call site]
00668
decode_token_alpha
[function]
[call site]
00669
decode_token_int1
[function]
[call site]
00670
decode_token_int
[function]
[call site]
00671
append_uint32_fixed
[function]
[call site]
00672
decode_token_int1
[function]
[call site]
00673
append_uint32_fixed
[function]
[call site]
00674
decode_token_int
[function]
[call site]
00675
append_uint32_var
[function]
[call site]
00676
decode_token_int1
[function]
[call site]
00677
append_uint32_var
[function]
[call site]
00678
append_uint32_var
[function]
[call site]
00679
append_uint32_fixed
[function]
[call site]
00680
realloc
[call site]
00681
free_context
[function]
[call site]
00682
pool_destroy
[function]
[call site]
00683
htscodecs_tls_free
[function]
[call site]
00684
free_context
[function]
[call site]
00685
cram_free_container
[function]
[call site]
00686
cram_free_block
[function]
[call site]
00687
int32_get_blk
[function]
[call site]
00688
cram_free_container
[function]
[call site]
00689
cram_free_block
[function]
[call site]
00690
cram_free_container
[function]
[call site]
00691
cram_free_block
[function]
[call site]
00692
cram_free_block
[function]
[call site]
00693
cram_read_block
[function]
[call site]
00694
cram_free_container
[function]
[call site]
00695
cram_free_block
[function]
[call site]
00696
cram_free_container
[function]
[call site]
00697
hread
[function]
[call site]
00698
cram_free_container
[function]
[call site]
00699
cram_free_container
[function]
[call site]
00700
sam_hdr_init
[function]
[call site]
00701
calloc
[call site]
00702
sam_hdr_add_lines
[function]
[call site]
00703
sam_hdr_fill_hrecs
[function]
[call site]
00704
sam_hrecs_new
[function]
[call site]
00705
calloc
[call site]
00706
kh_init_sam_hrecs_t
[function]
[call site]
00707
calloc
[call site]
00708
kh_init_m_s2i
[function]
[call site]
00709
calloc
[call site]
00710
kh_init_m_s2i
[function]
[call site]
00711
kh_init_m_s2i
[function]
[call site]
00712
pool_create
[function]
[call site]
00713
next_power_2
[function]
[call site]
00714
pool_create
[function]
[call site]
00715
string_pool_create
[function]
[call site]
00716
sam_hrecs_init_type_order
[function]
[call site]
00717
calloc
[call site]
00718
kh_destroy_sam_hrecs_t
[function]
[call site]
00719
pool_destroy
[function]
[call site]
00720
pool_destroy
[function]
[call site]
00721
string_pool_destroy
[function]
[call site]
00722
sam_hrecs_refs_from_targets_array
[function]
[call site]
00723
hts_log
[function]
[call site]
00724
realloc
[call site]
00725
kh_grow_to_fit_m_s2i
[function]
[call site]
00726
kh_resize_m_s2i
[function]
[call site]
00727
realloc
[call site]
00728
__ac_FNV1a_hash_string
[function]
[call site]
00729
string_dup
[function]
[call site]
00730
strlen
[call site]
00731
string_ndup
[function]
[call site]
00732
string_alloc
[function]
[call site]
00733
new_string_pool
[function]
[call site]
00734
realloc
[call site]
00735
kh_get_s2i
[function]
[call site]
00736
__ac_FNV1a_hash_string
[function]
[call site]
00737
strcmp
[call site]
00738
kh_put_m_s2i
[function]
[call site]
00739
strcmp
[call site]
00740
hts_log
[function]
[call site]
00741
__errno_location
[call site]
00742
strerror
[call site]
00743
hts_log
[function]
[call site]
00744
kh_get_m_s2i
[function]
[call site]
00745
kh_del_m_s2i
[function]
[call site]
00746
sam_hrecs_free
[function]
[call site]
00747
kh_destroy_sam_hrecs_t
[function]
[call site]
00748
kh_destroy_m_s2i
[function]
[call site]
00749
kh_destroy_m_s2i
[function]
[call site]
00750
kh_destroy_m_s2i
[function]
[call site]
00751
pool_destroy
[function]
[call site]
00752
pool_destroy
[function]
[call site]
00753
string_pool_destroy
[function]
[call site]
00754
sam_hrecs_parse_lines
[function]
[call site]
00755
strlen
[call site]
00756
sam_hrecs_error
[function]
[call site]
00757
hts_log
[function]
[call site]
00758
sam_hrecs_parse_single_line
[function]
[call site]
00759
sam_hrecs_error
[function]
[call site]
00760
isalpha_c
[function]
[call site]
00761
__ctype_b_loc
[call site]
00762
sam_hrecs_error
[function]
[call site]
00763
TYPEKEY
[function]
[call site]
00764
pool_alloc
[function]
[call site]
00765
new_pool
[function]
[call site]
00766
realloc
[call site]
00767
kh_put_sam_hrecs_t
[function]
[call site]
00768
kh_resize_sam_hrecs_t
[function]
[call site]
00769
realloc
[call site]
00770
TYPEKEY
[function]
[call site]
00771
parse_comment_line
[function]
[call site]
00772
sam_hrecs_error
[function]
[call site]
00773
warn_if_known_stderr
[function]
[call site]
00774
kmemmem
[function]
[call site]
00775
ksBM_prep
[function]
[call site]
00776
calloc
[call site]
00777
calloc
[call site]
00778
known_stderr
[function]
[call site]
00779
hts_log
[function]
[call site]
00780
hts_log
[function]
[call site]
00781
kmemmem
[function]
[call site]
00782
known_stderr
[function]
[call site]
00783
kmemmem
[function]
[call site]
00784
known_stderr
[function]
[call site]
00785
pool_alloc
[function]
[call site]
00786
string_ndup
[function]
[call site]
00787
parse_noncomment_line
[function]
[call site]
00788
TYPEKEY
[function]
[call site]
00789
sam_hrecs_error
[function]
[call site]
00790
warn_if_known_stderr
[function]
[call site]
00791
sam_hrecs_error
[function]
[call site]
00792
warn_if_known_stderr
[function]
[call site]
00793
pool_alloc
[function]
[call site]
00794
string_ndup
[function]
[call site]
00795
sam_hrecs_global_list_add
[function]
[call site]
00796
TYPEKEY
[function]
[call site]
00797
__assert_fail
[call site]
00798
sam_hrecs_free_tags
[function]
[call site]
00799
sam_hrecs_free_tags
[function]
[call site]
00800
pool_free
[function]
[call site]
00801
pool_free
[function]
[call site]
00802
TYPEKEY
[function]
[call site]
00803
kh_grow_to_fit_m_s2i
[function]
[call site]
00804
realloc
[call site]
00805
sam_hrecs_update_hashes
[function]
[call site]
00806
TYPEKEY
[function]
[call site]
00807
__assert_fail
[call site]
00808
__assert_fail
[call site]
00809
strtoll
[call site]
00810
__assert_fail
[call site]
00811
hts_log
[function]
[call site]
00812
hts_log
[function]
[call site]
00813
hts_log
[function]
[call site]
00814
kh_get_m_s2i
[function]
[call site]
00815
snprintf
[call site]
00816
sam_hrecs_update
[function]
[call site]
00817
sam_hrecs_vupdate
[function]
[call site]
00818
sam_hrecs_find_key
[function]
[call site]
00819
pool_alloc
[function]
[call site]
00820
strlen
[call site]
00821
string_alloc
[function]
[call site]
00822
snprintf
[call site]
00823
sam_hrecs_add_ref_altnames
[function]
[call site]
00824
kstrtok
[function]
[call site]
00825
strchr
[call site]
00826
strlen
[call site]
00827
string_ndup
[function]
[call site]
00828
kh_put_m_s2i
[function]
[call site]
00829
hts_log
[function]
[call site]
00830
strcmp
[call site]
00831
sam_hrecs_add_ref_altnames
[function]
[call site]
00832
strcmp
[call site]
00833
hts_log
[function]
[call site]
00834
hts_log
[function]
[call site]
00835
realloc
[call site]
00836
kh_put_m_s2i
[function]
[call site]
00837
sam_hrecs_add_ref_altnames
[function]
[call site]
00838
TYPEKEY
[function]
[call site]
00839
sam_hrecs_find_key
[function]
[call site]
00840
hts_log
[function]
[call site]
00841
__assert_fail
[call site]
00842
kh_get_m_s2i
[function]
[call site]
00843
__assert_fail
[call site]
00844
hts_log
[function]
[call site]
00845
realloc
[call site]
00846
kh_put_m_s2i
[function]
[call site]
00847
TYPEKEY
[function]
[call site]
00848
realloc
[call site]
00849
__assert_fail
[call site]
00850
hts_log
[function]
[call site]
00851
kh_get_m_s2i
[function]
[call site]
00852
kh_put_m_s2i
[function]
[call site]
00853
realloc
[call site]
00854
sam_hrecs_free
[function]
[call site]
00855
add_stub_ref_sq_lines
[function]
[call site]
00856
snprintf
[call site]
00857
sam_hrecs_add
[function]
[call site]
00858
sam_hrecs_vadd
[function]
[call site]
00859
TYPEKEY
[function]
[call site]
00860
strncmp
[call site]
00861
sam_hrecs_find_type_id
[function]
[call site]
00862
kh_get_m_s2i
[function]
[call site]
00863
kh_get_m_s2i
[function]
[call site]
00864
kh_get_m_s2i
[function]
[call site]
00865
TYPEKEY
[function]
[call site]
00866
kh_get_sam_hrecs_t
[function]
[call site]
00867
sam_hrecs_vupdate
[function]
[call site]
00868
pool_alloc
[function]
[call site]
00869
kh_put_sam_hrecs_t
[function]
[call site]
00870
__assert_fail
[call site]
00871
sam_hrecs_global_list_add
[function]
[call site]
00872
__assert_fail
[call site]
00873
__assert_fail
[call site]
00874
__assert_fail
[call site]
00875
__assert_fail
[call site]
00876
strncmp
[call site]
00877
pool_alloc
[function]
[call site]
00878
strncmp
[call site]
00879
strlen
[call site]
00880
string_alloc
[function]
[call site]
00881
snprintf
[call site]
00882
strlen
[call site]
00883
string_ndup
[function]
[call site]
00884
strncmp
[call site]
00885
pool_alloc
[function]
[call site]
00886
strncmp
[call site]
00887
strlen
[call site]
00888
string_alloc
[function]
[call site]
00889
snprintf
[call site]
00890
strlen
[call site]
00891
string_ndup
[function]
[call site]
00892
TYPEKEY
[function]
[call site]
00893
sam_hrecs_update_hashes
[function]
[call site]
00894
strncmp
[call site]
00895
hts_log
[function]
[call site]
00896
sam_hrecs_free
[function]
[call site]
00897
rebuild_target_arrays
[function]
[call site]
00898
sam_hdr_update_target_arrays
[function]
[call site]
00899
realloc
[call site]
00900
realloc
[call site]
00901
strcmp
[call site]
00902
strdup
[call site]
00903
kh_get_s2i
[function]
[call site]
00904
kh_del_s2i
[function]
[call site]
00905
kh_init_s2i
[function]
[call site]
00906
calloc
[call site]
00907
kh_put_s2i
[function]
[call site]
00908
kh_resize_s2i
[function]
[call site]
00909
realloc
[call site]
00910
kh_get_s2i
[function]
[call site]
00911
kh_del_s2i
[function]
[call site]
00912
sam_hrecs_parse_lines
[function]
[call site]
00913
rebuild_target_arrays
[function]
[call site]
00914
redact_header_text
[function]
[call site]
00915
__assert_fail
[call site]
00916
sam_hdr_destroy
[function]
[call site]
00917
sam_hrecs_free
[function]
[call site]
00918
kh_destroy_s2i
[function]
[call site]
00919
cram_free_file_def
[function]
[call site]
00920
calloc
[call site]
00921
strncpy
[call site]
00922
cram_init_tables
[function]
[call site]
00923
strrchr
[call site]
00924
strdup
[call site]
00925
refs_create
[function]
[call site]
00926
calloc
[call site]
00927
string_pool_create
[function]
[call site]
00928
kh_init_refs
[function]
[call site]
00929
calloc
[call site]
00930
pthread_mutex_init
[call site]
00931
refs_free
[function]
[call site]
00932
string_pool_destroy
[function]
[call site]
00933
ref_entry_free_seq
[function]
[call site]
00934
mfclose
[function]
[call site]
00935
mfflush
[function]
[call site]
00936
fwrite
[call site]
00937
fflush
[call site]
00938
fseek
[call site]
00939
fwrite
[call site]
00940
fflush
[call site]
00941
ftell
[call site]
00942
fileno
[call site]
00943
ftell
[call site]
00944
ftruncate
[call site]
00945
munmap
[call site]
00946
fclose
[call site]
00947
mfdestroy
[function]
[call site]
00948
kh_destroy_refs
[function]
[call site]
00949
bgzf_close
[function]
[call site]
00950
bgzf_flush
[function]
[call site]
00951
mt_queue
[function]
[call site]
00952
pthread_mutex_lock
[call site]
00953
pool_alloc
[function]
[call site]
00954
pthread_mutex_unlock
[call site]
00955
hts_tpool_dispatch3
[function]
[call site]
00956
pthread_mutex_lock
[call site]
00957
pthread_mutex_unlock
[call site]
00958
__errno_location
[call site]
00959
pthread_mutex_unlock
[call site]
00960
pthread_cond_wait
[call site]
00961
pthread_mutex_unlock
[call site]
00962
wake_next_worker
[function]
[call site]
00963
pthread_mutex_lock
[call site]
00964
__assert_fail
[call site]
00965
__assert_fail
[call site]
00966
pthread_cond_signal
[call site]
00967
pthread_mutex_unlock
[call site]
00968
pthread_mutex_unlock
[call site]
00969
bgzf_encode_level0_func
[function]
[call site]
00970
u16_to_le
[function]
[call site]
00971
u16_to_le
[function]
[call site]
00972
u16_to_le
[function]
[call site]
00973
hts_crc32
[function]
[call site]
00974
crc32
[call site]
00975
u32_to_le
[function]
[call site]
00976
u32_to_le
[function]
[call site]
00977
job_cleanup
[function]
[call site]
00978
pthread_mutex_lock
[call site]
00979
pool_free
[function]
[call site]
00980
pthread_mutex_unlock
[call site]
00981
hts_tpool_dispatch3
[function]
[call site]
00982
bgzf_encode_func
[function]
[call site]
00983
bgzf_compress
[function]
[call site]
00984
u16_to_le
[function]
[call site]
00985
u16_to_le
[function]
[call site]
00986
deflateInit2_
[call site]
00987
bgzf_zerr
[function]
[call site]
00988
hts_log
[function]
[call site]
00989
deflate
[call site]
00990
deflateEnd
[call site]
00991
bgzf_zerr
[function]
[call site]
00992
hts_log
[function]
[call site]
00993
deflateEnd
[call site]
00994
deflateEnd
[call site]
00995
bgzf_zerr
[function]
[call site]
00996
hts_log
[function]
[call site]
00997
packInt16
[function]
[call site]
00998
crc32
[call site]
00999
packInt32
[function]
[call site]
01000
packInt32
[function]
[call site]
01001
job_cleanup
[function]
[call site]
01002
job_cleanup
[function]
[call site]
01003
pthread_mutex_lock
[call site]
01004
pthread_mutex_unlock
[call site]
01005
mt_flush_queue
[function]
[call site]
01006
pthread_mutex_lock
[call site]
01007
hts_tpool_process_is_shutdown
[function]
[call site]
01008
pthread_mutex_lock
[call site]
01009
pthread_mutex_unlock
[call site]
01010
pthread_mutex_unlock
[call site]
01011
hts_usleep
[function]
[call site]
01012
nanosleep
[call site]
01013
pthread_mutex_lock
[call site]
01014
pthread_mutex_unlock
[call site]
01015
hts_tpool_process_flush
[function]
[call site]
01016
pthread_mutex_lock
[call site]
01017
pthread_cond_signal
[call site]
01018
pthread_cond_wait
[call site]
01019
gettimeofday
[call site]
01020
pthread_cond_timedwait
[call site]
01021
gettimeofday
[call site]
01022
pthread_cond_timedwait
[call site]
01023
pthread_mutex_unlock
[call site]
01024
pthread_mutex_lock
[call site]
01025
pthread_mutex_unlock
[call site]
01026
hflush
[function]
[call site]
01027
flush_buffer
[function]
[call site]
01028
__errno_location
[call site]
01029
bgzf_index_add_block
[function]
[call site]
01030
realloc
[call site]
01031
deflate_block
[function]
[call site]
01032
bgzf_compress
[function]
[call site]
01033
bgzf_gzip_compress
[function]
[call site]
01034
deflate
[call site]
01035
bgzf_zerr
[function]
[call site]
01036
hts_log
[function]
[call site]
01037
hts_log
[function]
[call site]
01038
hts_log
[function]
[call site]
01039
bgzf_zerr
[function]
[call site]
01040
hts_log
[function]
[call site]
01041
hwrite
[function]
[call site]
01042
hfile_set_blksize
[function]
[call site]
01043
realloc
[call site]
01044
hwrite2
[function]
[call site]
01045
flush_buffer
[function]
[call site]
01046
__errno_location
[call site]
01047
hwrite2
[function]
[call site]
01048
hts_log
[function]
[call site]
01049
bgzf_close_mt
[function]
[call site]
01050
mt_destroy
[function]
[call site]
01051
pthread_mutex_lock
[call site]
01052
pthread_cond_signal
[call site]
01053
hts_tpool_wake_dispatch
[function]
[call site]
01054
pthread_mutex_lock
[call site]
01055
pthread_cond_signal
[call site]
01056
pthread_mutex_unlock
[call site]
01057
pthread_mutex_unlock
[call site]
01058
hts_tpool_process_is_shutdown
[function]
[call site]
01059
hts_tpool_process_destroy
[function]
[call site]
01060
pthread_mutex_lock
[call site]
01061
pthread_mutex_unlock
[call site]
01062
hts_tpool_process_reset
[function]
[call site]
01063
pthread_mutex_lock
[call site]
01064
pthread_mutex_unlock
[call site]
01065
hts_tpool_delete_result
[function]
[call site]
01066
hts_tpool_process_flush
[function]
[call site]
01067
pthread_mutex_lock
[call site]
01068
pthread_cond_signal
[call site]
01069
pthread_mutex_unlock
[call site]
01070
hts_tpool_delete_result
[function]
[call site]
01071
pthread_mutex_lock
[call site]
01072
hts_tpool_process_detach_locked
[function]
[call site]
01073
hts_tpool_process_shutdown_locked
[function]
[call site]
01074
pthread_cond_broadcast
[call site]
01075
pthread_cond_broadcast
[call site]
01076
pthread_cond_broadcast
[call site]
01077
pthread_cond_broadcast
[call site]
01078
pthread_mutex_unlock
[call site]
01079
pthread_cond_destroy
[call site]
01080
pthread_cond_destroy
[call site]
01081
pthread_cond_destroy
[call site]
01082
pthread_cond_destroy
[call site]
01083
pthread_mutex_unlock
[call site]
01084
pthread_join
[call site]
01085
pthread_mutex_destroy
[call site]
01086
pthread_mutex_destroy
[call site]
01087
pthread_mutex_destroy
[call site]
01088
pthread_cond_destroy
[call site]
01089
pool_free
[function]
[call site]
01090
hts_tpool_destroy
[function]
[call site]
01091
pthread_mutex_lock
[call site]
01092
pthread_cond_signal
[call site]
01093
pthread_mutex_unlock
[call site]
01094
pthread_join
[call site]
01095
pthread_mutex_destroy
[call site]
01096
pthread_cond_destroy
[call site]
01097
pool_destroy
[function]
[call site]
01098
fflush
[call site]
01099
deflate_block
[function]
[call site]
01100
bgzf_zerr
[function]
[call site]
01101
hts_log
[function]
[call site]
01102
bgzf_close_mt
[function]
[call site]
01103
hwrite
[function]
[call site]
01104
hflush
[function]
[call site]
01105
hts_log
[function]
[call site]
01106
bgzf_close_mt
[function]
[call site]
01107
inflateEnd
[call site]
01108
deflateEnd
[call site]
01109
bgzf_zerr
[function]
[call site]
01110
hts_log
[function]
[call site]
01111
hclose
[function]
[call site]
01112
writebuffer_is_nonempty
[function]
[call site]
01113
hflush
[function]
[call site]
01114
__errno_location
[call site]
01115
hfile_destroy
[function]
[call site]
01116
__errno_location
[call site]
01117
bgzf_index_destroy
[function]
[call site]
01118
free_cache
[function]
[call site]
01119
kh_destroy_bgzf_cache
[function]
[call site]
01120
bgzf_clear_private_data
[function]
[call site]
01121
__assert_fail
[call site]
01122
pthread_mutex_destroy
[call site]
01123
pthread_mutex_init
[call site]
01124
pthread_mutex_init
[call site]
01125
pthread_mutex_init
[call site]
01126
pthread_mutex_init
[call site]
01127
cram_new_metrics
[function]
[call site]
01128
calloc
[call site]
01129
kh_init_m_metrics
[function]
[call site]
01130
calloc
[call site]
01131
refs_from_header
[function]
[call site]
01132
sam_hdr_fill_hrecs
[function]
[call site]
01133
realloc
[call site]
01134
kh_get_refs
[function]
[call site]
01135
__ac_FNV1a_hash_string
[function]
[call site]
01136
strcmp
[call site]
01137
calloc
[call site]
01138
string_dup
[function]
[call site]
01139
sam_hrecs_find_type_id
[function]
[call site]
01140
sam_hrecs_find_key
[function]
[call site]
01141
string_dup
[function]
[call site]
01142
sam_hrecs_find_key
[function]
[call site]
01143
strtoll
[call site]
01144
kh_put_refs
[function]
[call site]
01145
kh_resize_refs
[function]
[call site]
01146
realloc
[call site]
01147
cram_set_option
[function]
[call site]
01148
cram_set_voption
[function]
[call site]
01149
__errno_location
[call site]
01150
strdup
[call site]
01151
refs_free
[function]
[call site]
01152
cram_seek_to_refpos
[function]
[call site]
01153
cram_index_query
[function]
[call site]
01154
cram_seek
[function]
[call site]
01155
cram_drain_rqueue
[function]
[call site]
01156
hts_tpool_process_empty
[function]
[call site]
01157
pthread_mutex_lock
[call site]
01158
pthread_mutex_unlock
[call site]
01159
hts_tpool_next_result_wait
[function]
[call site]
01160
pthread_mutex_lock
[call site]
01161
hts_tpool_next_result_locked
[function]
[call site]
01162
pthread_cond_signal
[call site]
01163
wake_next_worker
[function]
[call site]
01164
gettimeofday
[call site]
01165
pthread_mutex_unlock
[call site]
01166
hts_tpool_process_destroy
[function]
[call site]
01167
pthread_cond_timedwait
[call site]
01168
pthread_mutex_unlock
[call site]
01169
hts_tpool_result_data
[function]
[call site]
01170
cram_free_container
[function]
[call site]
01171
cram_free_slice
[function]
[call site]
01172
hts_tpool_delete_result
[function]
[call site]
01173
cram_free_container
[function]
[call site]
01174
cram_free_slice
[function]
[call site]
01175
cram_free_container
[function]
[call site]
01176
hseek
[function]
[call site]
01177
pthread_mutex_lock
[call site]
01178
pthread_mutex_unlock
[call site]
01179
cram_free_container
[function]
[call site]
01180
cram_free_container
[function]
[call site]
01181
pthread_mutex_lock
[call site]
01182
pthread_mutex_unlock
[call site]
01183
pthread_mutex_lock
[call site]
01184
pthread_mutex_unlock
[call site]
01185
pthread_mutex_lock
[call site]
01186
pthread_mutex_unlock
[call site]
01187
cram_load_reference
[function]
[call site]
01188
refs_load_fai
[function]
[call site]
01189
strlen
[call site]
01190
refs_create
[function]
[call site]
01191
bgzf_close
[function]
[call site]
01192
strstr
[call site]
01193
string_ndup
[function]
[call site]
01194
snprintf
[call site]
01195
strcmp
[call site]
01196
string_ndup
[function]
[call site]
01197
snprintf
[call site]
01198
string_dup
[function]
[call site]
01199
snprintf
[call site]
01200
bgzf_open_ref
[function]
[call site]
01201
strncmp
[call site]
01202
hisremote
[function]
[call site]
01203
find_scheme_handler
[function]
[call site]
01204
snprintf
[call site]
01205
access
[call site]
01206
fai_build
[function]
[call site]
01207
fai_build3
[function]
[call site]
01208
fai_build3_core
[function]
[call site]
01209
bgzf_open
[function]
[call site]
01210
strchr
[call site]
01211
hopen
[function]
[call site]
01212
bgzf_read_init
[function]
[call site]
01213
hclose_abruptly
[function]
[call site]
01214
strchr
[call site]
01215
hopen
[function]
[call site]
01216
bgzf_write_init
[function]
[call site]
01217
__errno_location
[call site]
01218
ed_is_big
[function]
[call site]
01219
__errno_location
[call site]
01220
strerror
[call site]
01221
hts_log
[function]
[call site]
01222
bgzf_index_build_init
[function]
[call site]
01223
bgzf_index_destroy
[function]
[call site]
01224
calloc
[call site]
01225
hts_log
[function]
[call site]
01226
fai_build_core
[function]
[call site]
01227
calloc
[call site]
01228
kh_init_s
[function]
[call site]
01229
calloc
[call site]
01230
bgzf_getc_
[function]
[call site]
01231
bgzf_getc
[function]
[call site]
01232
bgzf_read_block
[function]
[call site]
01233
hts_tpool_next_result_wait
[function]
[call site]
01234
hts_tpool_result_data
[function]
[call site]
01235
mt_destroy
[function]
[call site]
01236
hts_tpool_delete_result
[function]
[call site]
01237
hts_log
[function]
[call site]
01238
hts_tpool_delete_result
[function]
[call site]
01239
hts_log
[function]
[call site]
01240
hts_tpool_delete_result
[function]
[call site]
01241
bgzf_index_add_block
[function]
[call site]
01242
pthread_mutex_lock
[call site]
01243
pool_free
[function]
[call site]
01244
pthread_mutex_unlock
[call site]
01245
hts_tpool_delete_result
[function]
[call site]
01246
bgzf_htell
[function]
[call site]
01247
pthread_mutex_lock
[call site]
01248
pthread_mutex_unlock
[call site]
01249
htell
[function]
[call site]
01250
hread
[function]
[call site]
01251
__errno_location
[call site]
01252
strerror
[call site]
01253
hts_log
[function]
[call site]
01254
inflate_gzip_block
[function]
[call site]
01255
hread
[function]
[call site]
01256
inflate
[call site]
01257
bgzf_zerr
[function]
[call site]
01258
hts_log
[function]
[call site]
01259
hpeek
[function]
[call site]
01260
inflateReset
[call site]
01261
bgzf_zerr
[function]
[call site]
01262
hts_log
[function]
[call site]
01263
hts_log
[function]
[call site]
01264
hts_log
[function]
[call site]
01265
load_block_from_cache
[function]
[call site]
01266
kh_get_bgzf_cache
[function]
[call site]
01267
hseek
[function]
[call site]
01268
hts_log
[function]
[call site]
01269
exit
[call site]
01270
hread
[function]
[call site]
01271
hts_log
[function]
[call site]
01272
check_header
[function]
[call site]
01273
unpackInt16
[function]
[call site]
01274
unpackInt16
[function]
[call site]
01275
hts_log
[function]
[call site]
01276
hread
[function]
[call site]
01277
calloc
[call site]
01278
inflateInit2_
[call site]
01279
bgzf_zerr
[function]
[call site]
01280
hts_log
[function]
[call site]
01281
inflate_gzip_block
[function]
[call site]
01282
hts_log
[function]
[call site]
01283
unpackInt16
[function]
[call site]
01284
hts_log
[function]
[call site]
01285
hread
[function]
[call site]
01286
hts_log
[function]
[call site]
01287
inflate_block
[function]
[call site]
01288
le_to_u32
[function]
[call site]
01289
bgzf_uncompress
[function]
[call site]
01290
inflateInit2_
[call site]
01291
bgzf_zerr
[function]
[call site]
01292
hts_log
[function]
[call site]
01293
inflate
[call site]
01294
bgzf_zerr
[function]
[call site]
01295
inflateEnd
[call site]
01296
bgzf_zerr
[function]
[call site]
01297
hts_log
[function]
[call site]
01298
inflateEnd
[call site]
01299
bgzf_zerr
[function]
[call site]
01300
hts_log
[function]
[call site]
01301
crc32
[call site]
01302
hts_log
[function]
[call site]
01303
bgzf_zerr
[function]
[call site]
01304
hts_log
[function]
[call site]
01305
bgzf_htell
[function]
[call site]
01306
bgzf_index_add_block
[function]
[call site]
01307
cache_block
[function]
[call site]
01308
kh_del_bgzf_cache
[function]
[call site]
01309
kh_put_bgzf_cache
[function]
[call site]
01310
kh_resize_bgzf_cache
[function]
[call site]
01311
realloc
[call site]
01312
bgzf_htell
[function]
[call site]
01313
hts_log
[function]
[call site]
01314
hts_log
[function]
[call site]
01315
bgzf_getc_
[function]
[call site]
01316
hts_log
[function]
[call site]
01317
__ctype_b_loc
[call site]
01318
hts_log
[function]
[call site]
01319
fai_insert_index
[function]
[call site]
01320
hts_log
[function]
[call site]
01321
strdup
[call site]
01322
kh_put_s
[function]
[call site]
01323
kh_resize_s
[function]
[call site]
01324
realloc
[call site]
01325
__ac_FNV1a_hash_string
[function]
[call site]
01326
strcmp
[call site]
01327
hts_log
[function]
[call site]
01328
realloc
[call site]
01329
hts_log
[function]
[call site]
01330
__ctype_b_loc
[call site]
01331
kputc
[function]
[call site]
01332
bgzf_getc_
[function]
[call site]
01333
kputsn
[function]
[call site]
01334
hts_log
[function]
[call site]
01335
bgzf_getc_
[function]
[call site]
01336
bgzf_utell
[function]
[call site]
01337
bgzf_getc_
[function]
[call site]
01338
bgzf_utell
[function]
[call site]
01339
hts_log
[function]
[call site]
01340
isgraph_
[function]
[call site]
01341
bgzf_getc_
[function]
[call site]
01342
hts_log
[function]
[call site]
01343
bgzf_getc_
[function]
[call site]
01344
bgzf_utell
[function]
[call site]
01345
hts_log
[function]
[call site]
01346
hts_log
[function]
[call site]
01347
isgraph_
[function]
[call site]
01348
bgzf_getc_
[function]
[call site]
01349
hts_log
[function]
[call site]
01350
hts_log
[function]
[call site]
01351
hts_log
[function]
[call site]
01352
fai_insert_index
[function]
[call site]
01353
hts_log
[function]
[call site]
01354
fai_destroy
[function]
[call site]
01355
kh_destroy_s
[function]
[call site]
01356
bgzf_close
[function]
[call site]
01357
hts_log
[function]
[call site]
01358
ksprintf
[function]
[call site]
01359
ksprintf
[function]
[call site]
01360
bgzf_index_dump
[function]
[call site]
01361
hts_log
[function]
[call site]
01362
__errno_location
[call site]
01363
get_name_suffix
[function]
[call site]
01364
strlen
[call site]
01365
snprintf
[call site]
01366
hopen
[function]
[call site]
01367
bgzf_index_dump_hfile
[function]
[call site]
01368
hts_log
[function]
[call site]
01369
__errno_location
[call site]
01370
bgzf_flush
[function]
[call site]
01371
hwrite_uint64
[function]
[call site]
01372
ed_is_big
[function]
[call site]
01373
ed_swap_8
[function]
[call site]
01374
hwrite
[function]
[call site]
01375
hwrite_uint64
[function]
[call site]
01376
hwrite_uint64
[function]
[call site]
01377
__errno_location
[call site]
01378
strerror
[call site]
01379
hts_log
[function]
[call site]
01380
hclose
[function]
[call site]
01381
strerror
[call site]
01382
hts_log
[function]
[call site]
01383
hclose_abruptly
[function]
[call site]
01384
hts_log
[function]
[call site]
01385
bgzf_close
[function]
[call site]
01386
__errno_location
[call site]
01387
strerror
[call site]
01388
hts_log
[function]
[call site]
01389
hopen
[function]
[call site]
01390
__errno_location
[call site]
01391
strerror
[call site]
01392
hts_log
[function]
[call site]
01393
fai_save
[function]
[call site]
01394
kh_get_s
[function]
[call site]
01395
__assert_fail
[call site]
01396
snprintf
[call site]
01397
snprintf
[call site]
01398
hputs
[function]
[call site]
01399
strlen
[call site]
01400
hputs2
[function]
[call site]
01401
hwrite2
[function]
[call site]
01402
hputs
[function]
[call site]
01403
__errno_location
[call site]
01404
strerror
[call site]
01405
hts_log
[function]
[call site]
01406
hclose
[function]
[call site]
01407
__errno_location
[call site]
01408
strerror
[call site]
01409
hts_log
[function]
[call site]
01410
fai_destroy
[function]
[call site]
01411
__errno_location
[call site]
01412
bgzf_close
[function]
[call site]
01413
fai_destroy
[function]
[call site]
01414
__errno_location
[call site]
01415
bgzf_open
[function]
[call site]
01416
perror
[call site]
01417
bgzf_index_load
[function]
[call site]
01418
get_name_suffix
[function]
[call site]
01419
hopen
[function]
[call site]
01420
bgzf_index_load_hfile
[function]
[call site]
01421
calloc
[call site]
01422
hread_uint64
[function]
[call site]
01423
hread
[function]
[call site]
01424
ed_is_big
[function]
[call site]
01425
ed_swap_8p
[function]
[call site]
01426
hread_uint64
[function]
[call site]
01427
hread_uint64
[function]
[call site]
01428
__errno_location
[call site]
01429
strerror
[call site]
01430
hts_log
[function]
[call site]
01431
hclose
[function]
[call site]
01432
__errno_location
[call site]
01433
strerror
[call site]
01434
hts_log
[function]
[call site]
01435
hclose_abruptly
[function]
[call site]
01436
hts_log
[function]
[call site]
01437
bgzf_close
[function]
[call site]
01438
hts_log
[function]
[call site]
01439
hopen
[function]
[call site]
01440
hts_log
[function]
[call site]
01441
perror
[call site]
01442
hgets
[function]
[call site]
01443
__errno_location
[call site]
01444
hgetln
[function]
[call site]
01445
hgetdelim
[function]
[call site]
01446
__errno_location
[call site]
01447
writebuffer_is_nonempty
[function]
[call site]
01448
__errno_location
[call site]
01449
memchr
[call site]
01450
refill_buffer
[function]
[call site]
01451
isspace_c
[function]
[call site]
01452
string_dup
[function]
[call site]
01453
isspace_c
[function]
[call site]
01454
strtoll
[call site]
01455
isspace_c
[function]
[call site]
01456
strtoll
[call site]
01457
isspace_c
[function]
[call site]
01458
strtol
[call site]
01459
isspace_c
[function]
[call site]
01460
strtol
[call site]
01461
kh_put_refs
[function]
[call site]
01462
realloc
[call site]
01463
hclose
[function]
[call site]
01464
hclose_abruptly
[function]
[call site]
01465
refs_free
[function]
[call site]
01466
sanitise_SQ_lines
[function]
[call site]
01467
kh_get_refs
[function]
[call site]
01468
strcmp
[call site]
01469
__assert_fail
[call site]
01470
hts_log
[function]
[call site]
01471
refs_free
[function]
[call site]
01472
refs_create
[function]
[call site]
01473
refs_from_header
[function]
[call site]
01474
refs2id
[function]
[call site]
01475
calloc
[call site]
01476
kh_get_refs
[function]
[call site]
01477
hts_log
[function]
[call site]
01478
__isoc99_sscanf
[call site]
01479
hts_log
[function]
[call site]
01480
hts_log
[function]
[call site]
01481
__errno_location
[call site]
01482
hts_log
[function]
[call site]
01483
cram_init_tables
[function]
[call site]
01484
hts_tpool_init
[function]
[call site]
01485
pthread_mutexattr_init
[call site]
01486
pthread_mutexattr_settype
[call site]
01487
pthread_mutex_init
[call site]
01488
pthread_mutexattr_destroy
[call site]
01489
pthread_mutex_lock
[call site]
01490
pthread_attr_init
[call site]
01491
pthread_attr_getstacksize
[call site]
01492
pthread_attr_setstacksize
[call site]
01493
pthread_cond_init
[call site]
01494
pthread_create
[call site]
01495
tpool_worker
[function]
[call site]
01496
pthread_mutex_lock
[call site]
01497
__assert_fail
[call site]
01498
pthread_cond_wait
[call site]
01499
__assert_fail
[call site]
01500
pthread_cond_broadcast
[call site]
01501
pthread_cond_signal
[call site]
01502
pthread_mutex_unlock
[call site]
01503
hts_tpool_add_result
[function]
[call site]
01504
pthread_mutex_lock
[call site]
01505
pthread_cond_signal
[call site]
01506
pthread_mutex_unlock
[call site]
01507
pthread_mutex_unlock
[call site]
01508
hts_tpool_process_shutdown
[function]
[call site]
01509
pthread_mutex_lock
[call site]
01510
hts_tpool_process_shutdown_locked
[function]
[call site]
01511
pthread_mutex_unlock
[call site]
01512
__assert_fail
[call site]
01513
pthread_cond_broadcast
[call site]
01514
pthread_mutex_unlock
[call site]
01515
pthread_mutex_lock
[call site]
01516
hts_tpool_process_destroy
[function]
[call site]
01517
pthread_mutex_unlock
[call site]
01518
pthread_mutex_lock
[call site]
01519
hts_tpool_process_shutdown_locked
[function]
[call site]
01520
pthread_mutex_unlock
[call site]
01521
pthread_mutex_unlock
[call site]
01522
pthread_attr_destroy
[call site]
01523
__errno_location
[call site]
01524
__errno_location
[call site]
01525
strerror
[call site]
01526
hts_log
[function]
[call site]
01527
pthread_mutex_unlock
[call site]
01528
pthread_join
[call site]
01529
pthread_cond_destroy
[call site]
01530
pthread_mutex_destroy
[call site]
01531
pthread_attr_destroy
[call site]
01532
__errno_location
[call site]
01533
hts_tpool_process_init
[function]
[call site]
01534
pthread_cond_init
[call site]
01535
pthread_cond_init
[call site]
01536
pthread_cond_init
[call site]
01537
pthread_cond_init
[call site]
01538
hts_tpool_process_attach
[function]
[call site]
01539
pthread_mutex_lock
[call site]
01540
__assert_fail
[call site]
01541
pthread_mutex_unlock
[call site]
01542
hts_tpool_size
[function]
[call site]
01543
hts_tpool_process_init
[function]
[call site]
01544
hts_log
[function]
[call site]
01545
__errno_location
[call site]
01546
bgzf_hopen
[function]
[call site]
01547
__errno_location
[call site]
01548
hts_process_opts
[function]
[call site]
01549
hts_parse_opt_list
[function]
[call site]
01550
strncpy
[call site]
01551
hts_opt_add
[function]
[call site]
01552
strdup
[call site]
01553
strchr
[call site]
01554
strcmp
[call site]
01555
strcmp
[call site]
01556
atoi
[call site]
01557
strcmp
[call site]
01558
strcmp
[call site]
01559
atoi
[call site]
01560
strcmp
[call site]
01561
strcmp
[call site]
01562
atoi
[call site]
01563
strcmp
[call site]
01564
strcmp
[call site]
01565
atoi
[call site]
01566
strcmp
[call site]
01567
strcmp
[call site]
01568
atoi
[call site]
01569
strcmp
[call site]
01570
strcmp
[call site]
01571
atoi
[call site]
01572
strcmp
[call site]
01573
strcmp
[call site]
01574
atoi
[call site]
01575
strcmp
[call site]
01576
strcmp
[call site]
01577
atoi
[call site]
01578
strcmp
[call site]
01579
strcmp
[call site]
01580
atoi
[call site]
01581
strcmp
[call site]
01582
strcmp
[call site]
01583
atoi
[call site]
01584
strcmp
[call site]
01585
strcmp
[call site]
01586
atoi
[call site]
01587
strcmp
[call site]
01588
strcmp
[call site]
01589
atoi
[call site]
01590
strcmp
[call site]
01591
strcmp
[call site]
01592
atoi
[call site]
01593
strcmp
[call site]
01594
strcmp
[call site]
01595
atoi
[call site]
01596
strcmp
[call site]
01597
atoi
[call site]
01598
strcmp
[call site]
01599
strcmp
[call site]
01600
strcmp
[call site]
01601
strcmp
[call site]
01602
strcmp
[call site]
01603
strcmp
[call site]
01604
strcmp
[call site]
01605
strcmp
[call site]
01606
strcmp
[call site]
01607
strcmp
[call site]
01608
strcmp
[call site]
01609
strcmp
[call site]
01610
strcmp
[call site]
01611
strcmp
[call site]
01612
atoi
[call site]
01613
strcmp
[call site]
01614
strcmp
[call site]
01615
atoi
[call site]
01616
strcmp
[call site]
01617
strcmp
[call site]
01618
strtol
[call site]
01619
hts_log
[function]
[call site]
01620
strcmp
[call site]
01621
strcmp
[call site]
01622
strtol
[call site]
01623
strcmp
[call site]
01624
strcmp
[call site]
01625
strtol
[call site]
01626
strcmp
[call site]
01627
strcmp
[call site]
01628
strcmp
[call site]
01629
strcmp
[call site]
01630
atoi
[call site]
01631
strcmp
[call site]
01632
strcmp
[call site]
01633
atoi
[call site]
01634
strcmp
[call site]
01635
strcmp
[call site]
01636
strtol
[call site]
01637
strcmp
[call site]
01638
strcmp
[call site]
01639
strtol
[call site]
01640
strcmp
[call site]
01641
strcmp
[call site]
01642
strcmp
[call site]
01643
strcmp
[call site]
01644
strcmp
[call site]
01645
strcmp
[call site]
01646
strcmp
[call site]
01647
strcmp
[call site]
01648
strcmp
[call site]
01649
strcmp
[call site]
01650
strcmp
[call site]
01651
strcmp
[call site]
01652
strcmp
[call site]
01653
strcmp
[call site]
01654
strcmp
[call site]
01655
strcmp
[call site]
01656
hts_log
[function]
[call site]
01657
hts_opt_apply
[function]
[call site]
01658
strdup
[call site]
01659
hts_set_opt
[function]
[call site]
01660
hts_set_threads
[function]
[call site]
01661
sam_set_threads
[function]
[call site]
01662
hts_tpool_init
[function]
[call site]
01663
sam_set_thread_pool
[function]
[call site]
01664
sam_state_create
[function]
[call site]
01665
calloc
[call site]
01666
pthread_mutex_init
[call site]
01667
pthread_mutex_init
[call site]
01668
pthread_cond_init
[call site]
01669
hts_tpool_size
[function]
[call site]
01670
hts_tpool_process_init
[function]
[call site]
01671
sam_state_destroy
[function]
[call site]
01672
pthread_mutex_lock
[call site]
01673
pthread_cond_signal
[call site]
01674
hts_tpool_wake_dispatch
[function]
[call site]
01675
hts_tpool_wake_dispatch
[function]
[call site]
01676
pthread_mutex_unlock
[call site]
01677
hts_usleep
[function]
[call site]
01678
pthread_mutex_lock
[call site]
01679
pthread_mutex_unlock
[call site]
01680
hts_tpool_dispatch
[function]
[call site]
01681
hts_tpool_dispatch3
[function]
[call site]
01682
sam_format_worker
[function]
[call site]
01683
pthread_mutex_lock
[call site]
01684
pthread_mutex_unlock
[call site]
01685
calloc
[call site]
01686
sam_state_err
[function]
[call site]
01687
pthread_mutex_lock
[call site]
01688
pthread_mutex_unlock
[call site]
01689
sam_format1_append
[function]
[call site]
01690
kputsn_
[function]
[call site]
01691
__errno_location
[call site]
01692
ks_resize
[function]
[call site]
01693
kputc_
[function]
[call site]
01694
ks_resize
[function]
[call site]
01695
kputw
[function]
[call site]
01696
ks_resize
[function]
[call site]
01697
kputuw
[function]
[call site]
01698
ks_resize
[function]
[call site]
01699
ks_resize
[function]
[call site]
01700
kputc_
[function]
[call site]
01701
kputs
[function]
[call site]
01702
kputc_
[function]
[call site]
01703
kputsn_
[function]
[call site]
01704
kputll
[function]
[call site]
01705
ks_resize
[function]
[call site]
01706
kputuw
[function]
[call site]
01707
kputc_
[function]
[call site]
01708
kputw
[function]
[call site]
01709
kputc_
[function]
[call site]
01710
kputw
[function]
[call site]
01711
kputc_
[function]
[call site]
01712
kputc_
[function]
[call site]
01713
kputc_
[function]
[call site]
01714
kputsn_
[function]
[call site]
01715
kputsn_
[function]
[call site]
01716
kputs
[function]
[call site]
01717
kputc_
[function]
[call site]
01718
kputll
[function]
[call site]
01719
kputc_
[function]
[call site]
01720
kputll
[function]
[call site]
01721
kputc_
[function]
[call site]
01722
ks_resize
[function]
[call site]
01723
nibble2base
[function]
[call site]
01724
add33
[function]
[call site]
01725
kputsn_
[function]
[call site]
01726
kputc_
[function]
[call site]
01727
sam_format_aux1
[function]
[call site]
01728
kputsn_
[function]
[call site]
01729
kputc_
[function]
[call site]
01730
kputsn_
[function]
[call site]
01731
kputw
[function]
[call site]
01732
kputsn_
[function]
[call site]
01733
kputw
[function]
[call site]
01734
kputsn_
[function]
[call site]
01735
le_to_u16
[function]
[call site]
01736
kputuw
[function]
[call site]
01737
kputsn_
[function]
[call site]
01738
le_to_i16
[function]
[call site]
01739
le_to_u16
[function]
[call site]
01740
kputw
[function]
[call site]
01741
kputsn_
[function]
[call site]
01742
le_to_u32
[function]
[call site]
01743
kputuw
[function]
[call site]
01744
kputsn_
[function]
[call site]
01745
le_to_i32
[function]
[call site]
01746
le_to_u32
[function]
[call site]
01747
kputw
[function]
[call site]
01748
kputsn_
[function]
[call site]
01749
kputc_
[function]
[call site]
01750
le_to_float
[function]
[call site]
01751
le_to_u32
[function]
[call site]
01752
ksprintf
[function]
[call site]
01753
le_to_double
[function]
[call site]
01754
le_to_u64
[function]
[call site]
01755
ksprintf
[function]
[call site]
01756
kputc_
[function]
[call site]
01757
kputc_
[function]
[call site]
01758
kputc_
[function]
[call site]
01759
kputsn
[function]
[call site]
01760
le_to_u32
[function]
[call site]
01761
kputsn_
[function]
[call site]
01762
kputc
[function]
[call site]
01763
ks_expand
[function]
[call site]
01764
__errno_location
[call site]
01765
ks_resize
[function]
[call site]
01766
kputw
[function]
[call site]
01767
ks_expand
[function]
[call site]
01768
kputuw
[function]
[call site]
01769
ks_expand
[function]
[call site]
01770
le_to_i16
[function]
[call site]
01771
kputw
[function]
[call site]
01772
ks_expand
[function]
[call site]
01773
le_to_u16
[function]
[call site]
01774
kputuw
[function]
[call site]
01775
ks_expand
[function]
[call site]
01776
le_to_i32
[function]
[call site]
01777
kputw
[function]
[call site]
01778
ks_expand
[function]
[call site]
01779
le_to_u32
[function]
[call site]
01780
kputuw
[function]
[call site]
01781
ks_expand
[function]
[call site]
01782
le_to_float
[function]
[call site]
01783
kputd
[function]
[call site]
01784
__errno_location
[call site]
01785
hts_log
[function]
[call site]
01786
__errno_location
[call site]
01787
kputsn
[function]
[call site]
01788
hts_log
[function]
[call site]
01789
__errno_location
[call site]
01790
hts_log
[function]
[call site]
01791
__errno_location
[call site]
01792
__errno_location
[call site]
01793
sam_state_err
[function]
[call site]
01794
kputc
[function]
[call site]
01795
pthread_mutex_lock
[call site]
01796
pthread_mutex_unlock
[call site]
01797
hts_tpool_process_flush
[function]
[call site]
01798
pthread_mutex_lock
[call site]
01799
pthread_mutex_unlock
[call site]
01800
hts_tpool_process_empty
[function]
[call site]
01801
hts_usleep
[function]
[call site]
01802
pthread_mutex_lock
[call site]
01803
hts_tpool_process_is_shutdown
[function]
[call site]
01804
pthread_mutex_unlock
[call site]
01805
hts_tpool_process_shutdown
[function]
[call site]
01806
pthread_join
[call site]
01807
hts_tpool_process_destroy
[function]
[call site]
01808
hts_tpool_destroy
[function]
[call site]
01809
pthread_mutex_destroy
[call site]
01810
pthread_mutex_destroy
[call site]
01811
pthread_cond_destroy
[call site]
01812
sam_free_sp_bams
[function]
[call site]
01813
sam_free_sp_bams
[function]
[call site]
01814
bam_hdr_destroy
[function]
[call site]
01815
sam_hdr_destroy
[function]
[call site]
01816
bgzf_thread_pool
[function]
[call site]
01817
calloc
[call site]
01818
hts_tpool_size
[function]
[call site]
01819
hts_tpool_process_init
[function]
[call site]
01820
hts_tpool_process_ref_incr
[function]
[call site]
01821
pthread_mutex_lock
[call site]
01822
pthread_mutex_unlock
[call site]
01823
pool_create
[function]
[call site]
01824
pthread_mutex_init
[call site]
01825
pthread_mutex_init
[call site]
01826
pthread_mutex_init
[call site]
01827
pthread_cond_init
[call site]
01828
pthread_create
[call site]
01829
hts_get_bgzfp
[function]
[call site]
01830
bgzf_mt
[function]
[call site]
01831
hts_tpool_init
[function]
[call site]
01832
bgzf_thread_pool
[function]
[call site]
01833
hts_tpool_destroy
[function]
[call site]
01834
hts_set_opt
[function]
[call site]
01835
hts_hfile
[function]
[call site]
01836
bgzf_hfile
[function]
[call site]
01837
cram_hfile
[function]
[call site]
01838
bgzf_hfile
[function]
[call site]
01839
hfile_set_blksize
[function]
[call site]
01840
hts_log
[function]
[call site]
01841
hts_log
[function]
[call site]
01842
hts_set_thread_pool
[function]
[call site]
01843
sam_set_thread_pool
[function]
[call site]
01844
hts_get_bgzfp
[function]
[call site]
01845
bgzf_thread_pool
[function]
[call site]
01846
hts_set_opt
[function]
[call site]
01847
hts_set_cache_size
[function]
[call site]
01848
hts_get_bgzfp
[function]
[call site]
01849
bgzf_set_cache_size
[function]
[call site]
01850
fastq_state_set
[function]
[call site]
01851
fastq_state_init
[function]
[call site]
01852
strcmp
[call site]
01856
kh_init_tag
[function]
[call site]
01857
calloc
[call site]
01858
strlen
[call site]
01859
hts_log
[function]
[call site]
01860
kh_put_tag
[function]
[call site]
01861
kh_resize_tag
[function]
[call site]
01862
realloc
[call site]
01863
strncpy
[call site]
01864
strcmp
[call site]
01865
__ctype_b_loc
[call site]
01866
isalnum_c
[function]
[call site]
01867
strncpy
[call site]
01868
hts_log
[function]
[call site]
01869
regfree
[call site]
01870
regcomp
[call site]
01871
hts_log
[function]
[call site]
01872
fastq_state_set
[function]
[call site]
01873
fastq_state_set
[function]
[call site]
01874
cram_set_option
[function]
[call site]
01875
hts_set_filter_expression
[function]
[call site]
01876
hts_filter_free
[function]
[call site]
01877
regfree
[call site]
01878
hts_filter_init
[function]
[call site]
01879
cram_set_voption
[function]
[call site]
01883
hts_set_opt
[function]
[call site]
01884
hts_opt_free
[function]
[call site]
01885
hts_opt_free
[function]
[call site]
01886
hclose_abruptly
[function]
[call site]
01887
hts_log
[function]
[call site]
01888
hclose_abruptly
[function]
[call site]
01889
hclose
[function]
[call site]
01890
abort
[call site]
01891
hts_close
[function]
[call site]
01892
__errno_location
[call site]
01893
bgzf_close
[function]
[call site]
01894
cram_eof
[function]
[call site]
01895
hts_log
[function]
[call site]
01896
cram_close
[function]
[call site]
01897
cram_update_curr_slice
[function]
[call site]
01898
cram_flush_container_mt
[function]
[call site]
01899
pthread_mutex_lock
[call site]
01900
reset_metrics
[function]
[call site]
01901
pthread_mutex_unlock
[call site]
01902
hts_tpool_process_flush
[function]
[call site]
01903
pthread_mutex_lock
[call site]
01904
pthread_mutex_unlock
[call site]
01905
cram_flush_container
[function]
[call site]
01906
cram_encode_container
[function]
[call site]
01907
pthread_mutex_lock
[call site]
01908
hts_log
[function]
[call site]
01909
hts_log
[function]
[call site]
01910
pthread_mutex_unlock
[call site]
01911
pthread_mutex_lock
[call site]
01912
pthread_mutex_unlock
[call site]
01913
cram_get_ref
[function]
[call site]
01914
pthread_mutex_lock
[call site]
01915
hts_log
[function]
[call site]
01916
pthread_mutex_unlock
[call site]
01917
hts_log
[function]
[call site]
01918
pthread_mutex_unlock
[call site]
01919
hts_log
[function]
[call site]
01920
pthread_mutex_unlock
[call site]
01921
pthread_mutex_lock
[call site]
01922
hts_log
[function]
[call site]
01923
cram_populate_ref
[function]
[call site]
01924
getenv
[call site]
01925
getenv
[call site]
01926
hts_log
[function]
[call site]
01927
sam_hrecs_find_type_id
[function]
[call site]
01928
sam_hrecs_find_key
[function]
[call site]
01929
hts_log
[function]
[call site]
01930
expand_cache_path
[function]
[call site]
01931
strchr
[call site]
01932
strncpy
[call site]
01933
strlen
[call site]
01934
strcpy
[call site]
01935
strtol
[call site]
01936
strlen
[call site]
01937
strncpy
[call site]
01938
strlen
[call site]
01939
strcpy
[call site]
01940
strlen
[call site]
01941
strcpy
[call site]
01942
stat
[call site]
01943
stat
[call site]
01944
bgzf_open
[function]
[call site]
01945
string_dup
[function]
[call site]
01946
bgzf_close
[function]
[call site]
01947
open_path_mfile
[function]
[call site]
01948
getenv
[call site]
01949
tokenise_search_path
[function]
[call site]
01950
strlen
[call site]
01951
strncmp
[call site]
01952
strncmp
[call site]
01953
strncmp
[call site]
01954
strncmp
[call site]
01955
strncmp
[call site]
01956
strncmp
[call site]
01957
strncmp
[call site]
01958
strncmp
[call site]
01959
strncmp
[call site]
01960
strncmp
[call site]
01961
find_file_url
[function]
[call site]
01962
expand_path
[function]
[call site]
01963
strlen
[call site]
01964
strlen
[call site]
01965
hts_log
[function]
[call site]
01966
strchr
[call site]
01967
strtol
[call site]
01968
hopen
[function]
[call site]
01969
__errno_location
[call site]
01970
__errno_location
[call site]
01971
strerror
[call site]
01972
hts_log
[function]
[call site]
01973
mfcreate
[function]
[call site]
01974
hread
[function]
[call site]
01975
mfwrite
[function]
[call site]
01976
realloc
[call site]
01977
hclose_abruptly
[function]
[call site]
01978
hclose
[function]
[call site]
01979
__errno_location
[call site]
01980
strerror
[call site]
01981
hts_log
[function]
[call site]
01982
mrewind
[function]
[call site]
01983
mfdestroy
[function]
[call site]
01984
strncmp
[call site]
01985
hisremote
[function]
[call site]
01986
find_file_url
[function]
[call site]
01987
find_file_dir
[function]
[call site]
01988
expand_path
[function]
[call site]
01989
is_file
[function]
[call site]
01990
stat
[call site]
01991
mfopen
[function]
[call site]
01992
fopen
[call site]
01993
mfreopen
[function]
[call site]
01994
strchr
[call site]
01995
strchr
[call site]
01996
strchr
[call site]
01997
strchr
[call site]
01998
strchr
[call site]
01999
strchr
[call site]
02000
strchr
[call site]
02001
mfcreate
[function]
[call site]
02002
mfmmap
[function]
[call site]
02003
mfload
[function]
[call site]
02007
stat
[call site]
02008
realloc
[call site]
02009
fread
[call site]
02010
feof
[call site]
02011
fseek
[call site]
02012
mfcreate
[function]
[call site]
02013
hts_log
[function]
[call site]
02014
fseek
[call site]
02015
strlen
[call site]
02016
strcpy
[call site]
02017
strrchr
[call site]
02018
find_file_dir
[function]
[call site]
02019
mfsteal
[function]
[call site]
02020
mfdetach
[function]
[call site]
02021
mfflush
[function]
[call site]
02022
fclose
[call site]
02023
mfdestroy
[function]
[call site]
02024
sam_hrecs_find_key
[function]
[call site]
02025
strstr
[call site]
02026
strncmp
[call site]
02027
hts_log
[function]
[call site]
02028
strncmp
[call site]
02029
bgzf_close
[function]
[call site]
02030
refs_load_fai
[function]
[call site]
02031
sanitise_SQ_lines
[function]
[call site]
02032
bgzf_close
[function]
[call site]
02033
refs2id
[function]
[call site]
02034
expand_cache_path
[function]
[call site]
02035
hts_log
[function]
[call site]
02036
mkdir_prefix
[function]
[call site]
02037
strrchr
[call site]
02038
is_directory
[function]
[call site]
02039
stat
[call site]
02040
mkdir
[call site]
02041
chmod
[call site]
02042
mkdir_prefix
[function]
[call site]
02043
mkdir
[call site]
02044
chmod
[call site]
02045
hts_open_tmpfile
[function]
[call site]
02046
getpid
[call site]
02047
time
[call site]
02048
clock
[call site]
02049
ks_clear
[function]
[call site]
02050
ksprintf
[function]
[call site]
02051
hopen
[function]
[call site]
02052
__errno_location
[call site]
02053
perror
[call site]
02054
hts_md5_init
[function]
[call site]
02055
hts_md5_reset
[function]
[call site]
02056
hclose_abruptly
[function]
[call site]
02057
unlink
[call site]
02058
hts_md5_update
[function]
[call site]
02059
body
[function]
[call site]
02060
body
[function]
[call site]
02061
hts_md5_final
[function]
[call site]
02062
body
[function]
[call site]
02063
body
[function]
[call site]
02064
hts_md5_destroy
[function]
[call site]
02065
hts_md5_hex
[function]
[call site]
02066
strncmp
[call site]
02067
hts_log
[function]
[call site]
02068
hclose_abruptly
[function]
[call site]
02069
unlink
[call site]
02070
hwrite
[function]
[call site]
02071
hclose
[function]
[call site]
02072
chmod
[call site]
02073
rename
[call site]
02074
__errno_location
[call site]
02075
strerror
[call site]
02076
hts_log
[function]
[call site]
02077
unlink
[call site]
02078
hts_log
[function]
[call site]
02079
hts_log
[function]
[call site]
02080
pthread_mutex_unlock
[call site]
02081
pthread_mutex_unlock
[call site]
02082
cram_ref_incr_locked
[function]
[call site]
02083
cram_ref_incr_locked
[function]
[call site]
02084
cram_ref_load
[function]
[call site]
02085
__assert_fail
[call site]
02086
__assert_fail
[call site]
02087
ref_entry_free_seq
[function]
[call site]
02088
strcmp
[call site]
02089
bgzf_close
[function]
[call site]
02090
bgzf_open_ref
[function]
[call site]
02091
load_ref_portion
[function]
[call site]
02092
bgzf_useek
[function]
[call site]
02093
hseek
[function]
[call site]
02094
bgzf_read_block
[function]
[call site]
02095
bgzf_seek_common
[function]
[call site]
02096
pthread_mutex_lock
[call site]
02097
pthread_cond_signal
[call site]
02098
hts_tpool_wake_dispatch
[function]
[call site]
02099
pthread_cond_wait
[call site]
02100
pthread_cond_signal
[call site]
02101
abort
[call site]
02102
__errno_location
[call site]
02103
pthread_mutex_unlock
[call site]
02104
pthread_mutex_unlock
[call site]
02105
hseek
[function]
[call site]
02106
bgzf_read_block
[function]
[call site]
02107
__assert_fail
[call site]
02108
perror
[call site]
02109
bgzf_read
[function]
[call site]
02110
__assert_fail
[call site]
02111
bgzf_read_block
[function]
[call site]
02112
hts_log
[function]
[call site]
02113
bgzf_htell
[function]
[call site]
02114
hts_log
[function]
[call site]
02115
bgzf_htell
[function]
[call site]
02116
perror
[call site]
02117
isspace_c
[function]
[call site]
02118
isspace_c
[function]
[call site]
02119
isspace_c
[function]
[call site]
02120
hts_log
[function]
[call site]
02121
toupper_c
[function]
[call site]
02122
toupper
[call site]
02123
pthread_mutex_unlock
[call site]
02124
pthread_mutex_unlock
[call site]
02125
cram_ref_incr_locked
[function]
[call site]
02126
pthread_mutex_unlock
[call site]
02127
pthread_mutex_unlock
[call site]
02128
pthread_mutex_unlock
[call site]
02129
pthread_mutex_unlock
[call site]
02130
strcmp
[call site]
02131
bgzf_close
[function]
[call site]
02132
bgzf_open_ref
[function]
[call site]
02133
pthread_mutex_unlock
[call site]
02134
pthread_mutex_unlock
[call site]
02135
load_ref_portion
[function]
[call site]
02136
pthread_mutex_unlock
[call site]
02137
pthread_mutex_unlock
[call site]
02138
pthread_mutex_unlock
[call site]
02139
pthread_mutex_unlock
[call site]
02140
hts_log
[function]
[call site]
02141
hts_log
[function]
[call site]
02142
pthread_mutex_lock
[call site]
02143
pthread_mutex_unlock
[call site]
02144
hts_log
[function]
[call site]
02145
hts_log
[function]
[call site]
02146
hts_log
[function]
[call site]
02147
hts_log
[function]
[call site]
02148
pthread_mutex_lock
[call site]
02149
validate_md5
[function]
[call site]
02150
sam_hrecs_find_type_id
[function]
[call site]
02151
sam_hrecs_find_key
[function]
[call site]
02152
hts_md5_init
[function]
[call site]
02153
hts_md5_update
[function]
[call site]
02154
hts_md5_final
[function]
[call site]
02155
hts_md5_destroy
[function]
[call site]
02156
hts_md5_hex
[function]
[call site]
02157
strcmp
[call site]
02158
hts_log
[function]
[call site]
02159
hts_log
[function]
[call site]
02160
cram_ref_incr
[function]
[call site]
02161
pthread_mutex_lock
[call site]
02162
cram_ref_incr_locked
[function]
[call site]
02163
pthread_mutex_unlock
[call site]
02164
cram_get_ref
[function]
[call site]
02165
validate_md5
[function]
[call site]
02166
hts_log
[function]
[call site]
02167
__assert_fail
[call site]
02168
lossy_read_names
[function]
[call site]
02169
kh_init_m_s2u64
[function]
[call site]
02170
calloc
[call site]
02171
expected_template_count
[function]
[call site]
02172
bam_aux_get
[function]
[call site]
02173
bam_aux_first
[function]
[call site]
02174
__errno_location
[call site]
02175
skip_aux
[function]
[call site]
02176
aux_type2size
[function]
[call site]
02177
memchr
[call site]
02178
aux_type2size
[function]
[call site]
02179
le_to_u32
[function]
[call site]
02180
bam_aux_next
[function]
[call site]
02181
skip_aux
[function]
[call site]
02182
__errno_location
[call site]
02183
hts_log
[function]
[call site]
02184
__errno_location
[call site]
02185
hts_log
[function]
[call site]
02186
__errno_location
[call site]
02187
bam_data_end
[function]
[call site]
02188
bam_aux2i_end
[function]
[call site]
02189
__errno_location
[call site]
02190
__errno_location
[call site]
02191
__errno_location
[call site]
02192
le_to_i16
[function]
[call site]
02193
le_to_u16
[function]
[call site]
02194
__errno_location
[call site]
02195
le_to_u16
[function]
[call site]
02196
__errno_location
[call site]
02197
le_to_i32
[function]
[call site]
02198
le_to_u32
[function]
[call site]
02199
__errno_location
[call site]
02200
le_to_u32
[function]
[call site]
02201
__errno_location
[call site]
02202
bam_aux_get
[function]
[call site]
02203
kh_put_m_s2u64
[function]
[call site]
02204
kh_resize_m_s2u64
[function]
[call site]
02205
realloc
[call site]
02206
__ac_FNV1a_hash_string
[function]
[call site]
02207
strcmp
[call site]
02208
kh_get_m_s2u64
[function]
[call site]
02209
kh_destroy_m_s2u64
[function]
[call site]
02210
cram_generate_reference
[function]
[call site]
02211
extend_ref
[function]
[call site]
02212
realloc
[call site]
02213
realloc
[call site]
02214
hts_log
[function]
[call site]
02215
cram_add_to_ref
[function]
[call site]
02216
bam_aux_get
[function]
[call site]
02217
cram_add_to_ref_MD
[function]
[call site]
02218
bam_cigar2rlen
[function]
[call site]
02219
extend_ref
[function]
[call site]
02220
__ctype_b_loc
[call site]
02221
hts_str2uint
[function]
[call site]
02222
extend_ref
[function]
[call site]
02223
next_cigar_op
[function]
[call site]
02224
hts_log
[function]
[call site]
02225
__ctype_b_loc
[call site]
02226
extend_ref
[function]
[call site]
02227
next_cigar_op
[function]
[call site]
02228
hts_log
[function]
[call site]
02229
extend_ref
[function]
[call site]
02230
next_cigar_op
[function]
[call site]
02231
extend_ref
[function]
[call site]
02232
hts_log
[function]
[call site]
02233
hts_log
[function]
[call site]
02234
pthread_mutex_lock
[call site]
02235
pthread_mutex_unlock
[call site]
02236
pthread_mutex_lock
[call site]
02237
pthread_mutex_unlock
[call site]
02238
cram_ref_decr
[function]
[call site]
02239
pthread_mutex_lock
[call site]
02240
cram_ref_decr_locked
[function]
[call site]
02241
__assert_fail
[call site]
02242
ref_entry_free_seq
[function]
[call site]
02243
pthread_mutex_unlock
[call site]
02244
cram_get_ref
[function]
[call site]
02245
hts_log
[function]
[call site]
02246
validate_md5
[function]
[call site]
02247
process_one_read
[function]
[call site]
02248
bam_aux_get
[function]
[call site]
02249
bam_aux_get
[function]
[call site]
02250
cram_stats_add
[function]
[call site]
02251
kh_init_m_i2i
[function]
[call site]
02252
calloc
[call site]
02253
kh_put_m_i2i
[function]
[call site]
02254
kh_resize_m_i2i
[function]
[call site]
02255
realloc
[call site]
02256
cram_stats_add
[function]
[call site]
02257
cram_stats_add
[function]
[call site]
02258
block_grow
[function]
[call site]
02259
block_resize
[function]
[call site]
02260
block_resize_exact
[function]
[call site]
02261
realloc
[call site]
02262
block_grow
[function]
[call site]
02263
nibble2base
[function]
[call site]
02264
hts_log
[function]
[call site]
02265
realloc
[call site]
02266
hts_log
[function]
[call site]
02267
kputuw
[function]
[call site]
02268
ks_resize
[function]
[call site]
02269
ks_resize
[function]
[call site]
02270
kputc
[function]
[call site]
02271
ks_resize
[function]
[call site]
02272
cram_add_substitution
[function]
[call site]
02273
cram_stats_add
[function]
[call site]
02274
cram_stats_add
[function]
[call site]
02275
cram_stats_add
[function]
[call site]
02276
block_append_char
[function]
[call site]
02277
block_grow
[function]
[call site]
02278
cram_add_feature
[function]
[call site]
02279
realloc
[call site]
02280
cram_stats_add
[function]
[call site]
02281
cram_stats_add
[function]
[call site]
02282
cram_stats_add
[function]
[call site]
02283
cram_add_bases
[function]
[call site]
02284
cram_add_feature
[function]
[call site]
02285
cram_add_base
[function]
[call site]
02286
cram_stats_add
[function]
[call site]
02287
cram_stats_add
[function]
[call site]
02288
block_append_char
[function]
[call site]
02289
cram_add_feature
[function]
[call site]
02290
cram_add_base
[function]
[call site]
02291
kputuw
[function]
[call site]
02292
kputc_
[function]
[call site]
02293
ks_resize
[function]
[call site]
02294
kputsn
[function]
[call site]
02295
ks_resize
[function]
[call site]
02296
cram_add_deletion
[function]
[call site]
02297
cram_stats_add
[function]
[call site]
02298
cram_add_feature
[function]
[call site]
02299
cram_add_skip
[function]
[call site]
02300
cram_stats_add
[function]
[call site]
02301
cram_add_feature
[function]
[call site]
02302
cram_add_insertion
[function]
[call site]
02303
cram_stats_add
[function]
[call site]
02304
block_append
[function]
[call site]
02305
block_grow
[function]
[call site]
02306
block_append_char
[function]
[call site]
02307
block_append_char
[function]
[call site]
02308
cram_add_feature
[function]
[call site]
02309
cram_add_quality
[function]
[call site]
02310
cram_stats_add
[function]
[call site]
02311
block_append_char
[function]
[call site]
02312
cram_add_feature
[function]
[call site]
02313
cram_add_softclip
[function]
[call site]
02314
block_append
[function]
[call site]
02315
block_append_char
[function]
[call site]
02316
block_append
[function]
[call site]
02317
block_append_char
[function]
[call site]
02318
block_append_char
[function]
[call site]
02319
cram_add_feature
[function]
[call site]
02320
cram_add_quality
[function]
[call site]
02321
cram_add_quality
[function]
[call site]
02322
cram_add_hardclip
[function]
[call site]
02323
cram_stats_add
[function]
[call site]
02324
cram_add_feature
[function]
[call site]
02325
cram_add_pad
[function]
[call site]
02326
cram_stats_add
[function]
[call site]
02327
cram_add_feature
[function]
[call site]
02328
hts_log
[function]
[call site]
02329
hts_log
[function]
[call site]
02330
cram_stats_add
[function]
[call site]
02331
kputuw
[function]
[call site]
02332
cram_stats_add
[function]
[call site]
02333
cram_encode_aux
[function]
[call site]
02334
bam_data_end
[function]
[call site]
02335
hts_log
[function]
[call site]
02336
sam_hrecs_find_rg
[function]
[call site]
02337
kh_get_m_s2i
[function]
[call site]
02338
block_append
[function]
[call site]
02339
hts_log
[function]
[call site]
02340
strncasecmp
[call site]
02341
hts_log
[function]
[call site]
02342
block_append
[function]
[call site]
02343
bam_aux2i_end
[function]
[call site]
02344
hts_log
[function]
[call site]
02345
block_append
[function]
[call site]
02346
block_append
[function]
[call site]
02347
kh_put_m_tagmap
[function]
[call site]
02348
kh_resize_m_tagmap
[function]
[call site]
02349
realloc
[call site]
02350
pthread_mutex_lock
[call site]
02351
kh_put_m_metrics
[function]
[call site]
02352
kh_resize_m_metrics
[function]
[call site]
02353
realloc
[call site]
02354
pthread_mutex_unlock
[call site]
02355
cram_new_metrics
[function]
[call site]
02356
kh_del_m_metrics
[function]
[call site]
02357
pthread_mutex_unlock
[call site]
02358
pthread_mutex_unlock
[call site]
02359
calloc
[call site]
02360
cram_encoder_init
[function]
[call site]
02361
cram_encoding2str
[function]
[call site]
02362
hts_log
[function]
[call site]
02363
cram_encoding2str
[function]
[call site]
02364
hts_log
[function]
[call site]
02365
abort
[call site]
02366
cram_stats_add
[function]
[call site]
02367
cram_stats_encoding
[function]
[call site]
02368
realloc
[call site]
02369
realloc
[call site]
02370
realloc
[call site]
02371
realloc
[call site]
02372
__assert_fail
[call site]
02373
cram_encoder_init
[function]
[call site]
02374
cram_stats_add
[function]
[call site]
02375
cram_stats_encoding
[function]
[call site]
02376
cram_encoder_init
[function]
[call site]
02377
cram_stats_add
[function]
[call site]
02378
cram_stats_encoding
[function]
[call site]
02379
cram_encoder_init
[function]
[call site]
02380
cram_encoder_init
[function]
[call site]
02381
hts_log
[function]
[call site]
02382
pthread_mutex_lock
[call site]
02383
pthread_mutex_unlock
[call site]
02384
cram_new_block
[function]
[call site]
02385
block_append_char
[function]
[call site]
02386
cram_new_block
[function]
[call site]
02387
block_append
[function]
[call site]
02388
cram_new_block
[function]
[call site]
02389
block_append
[function]
[call site]
02390
cram_new_block
[function]
[call site]
02391
block_append
[function]
[call site]
02392
cram_new_block
[function]
[call site]
02393
hts_log
[function]
[call site]
02394
cram_new_block
[function]
[call site]
02395
cram_new_block
[function]
[call site]
02396
hts_log
[function]
[call site]
02397
hts_log
[function]
[call site]
02398
block_append_char
[function]
[call site]
02399
string_ndup
[function]
[call site]
02400
kh_put_m_s2i
[function]
[call site]
02401
kh_resize_m_s2i
[function]
[call site]
02402
__ac_FNV1a_hash_string
[function]
[call site]
02403
cram_stats_add
[function]
[call site]
02404
sam_hrecs_find_rg
[function]
[call site]
02405
cram_stats_add
[function]
[call site]
02406
block_grow
[function]
[call site]
02407
block_grow
[function]
[call site]
02408
cram_stats_add
[function]
[call site]
02409
string_ndup
[function]
[call site]
02410
kh_put_m_s2i
[function]
[call site]
02411
cram_stats_add
[function]
[call site]
02412
cram_stats_add
[function]
[call site]
02413
cram_stats_del
[function]
[call site]
02414
__assert_fail
[call site]
02415
kh_get_m_i2i
[function]
[call site]
02416
kh_del_m_i2i
[function]
[call site]
02417
hts_log
[function]
[call site]
02418
hts_log
[function]
[call site]
02419
cram_stats_del
[function]
[call site]
02420
cram_stats_del
[function]
[call site]
02421
cram_stats_del
[function]
[call site]
02422
cram_stats_add
[function]
[call site]
02423
cram_stats_del
[function]
[call site]
02424
cram_stats_add
[function]
[call site]
02425
cram_stats_add
[function]
[call site]
02426
cram_stats_add
[function]
[call site]
02427
cram_stats_add
[function]
[call site]
02428
cram_stats_add
[function]
[call site]
02429
cram_stats_add
[function]
[call site]
02430
cram_stats_add
[function]
[call site]
02431
cram_stats_add
[function]
[call site]
02432
add_read_names
[function]
[call site]
02433
block_append
[function]
[call site]
02434
block_append
[function]
[call site]
02435
cram_stats_add
[function]
[call site]
02436
calloc
[call site]
02437
__assert_fail
[call site]
02438
cram_ref_decr
[function]
[call site]
02439
pthread_mutex_lock
[call site]
02440
pthread_mutex_unlock
[call site]
02441
cram_stats_encoding
[function]
[call site]
02442
pthread_mutex_lock
[call site]
02443
pthread_mutex_unlock
[call site]
02444
hts_log
[function]
[call site]
02445
hts_md5_init
[function]
[call site]
02446
hts_md5_update
[function]
[call site]
02447
hts_md5_final
[function]
[call site]
02448
hts_md5_destroy
[function]
[call site]
02449
cram_stats_encoding
[function]
[call site]
02450
cram_encoder_init
[function]
[call site]
02451
cram_stats_encoding
[function]
[call site]
02452
cram_encoder_init
[function]
[call site]
02453
cram_stats_encoding
[function]
[call site]
02454
cram_encoder_init
[function]
[call site]
02455
cram_encoder_init
[function]
[call site]
02456
cram_encoder_init
[function]
[call site]
02457
cram_stats_encoding
[function]
[call site]
02458
cram_encoder_init
[function]
[call site]
02459
cram_stats_encoding
[function]
[call site]
02460
cram_encoder_init
[function]
[call site]
02461
cram_stats_encoding
[function]
[call site]
02462
cram_encoder_init
[function]
[call site]
02463
cram_stats_encoding
[function]
[call site]
02464
cram_encoder_init
[function]
[call site]
02465
cram_stats_encoding
[function]
[call site]
02466
cram_encoder_init
[function]
[call site]
02467
cram_stats_encoding
[function]
[call site]
02468
cram_encoder_init
[function]
[call site]
02469
cram_stats_encoding
[function]
[call site]
02470
cram_encoder_init
[function]
[call site]
02471
cram_stats_encoding
[function]
[call site]
02472
cram_encoder_init
[function]
[call site]
02473
cram_stats_encoding
[function]
[call site]
02474
cram_encoder_init
[function]
[call site]
02475
cram_stats_encoding
[function]
[call site]
02476
cram_encoder_init
[function]
[call site]
02477
cram_stats_encoding
[function]
[call site]
02478
cram_encoder_init
[function]
[call site]
02479
cram_stats_encoding
[function]
[call site]
02480
cram_encoder_init
[function]
[call site]
02481
cram_stats_encoding
[function]
[call site]
02482
cram_encoder_init
[function]
[call site]
02483
cram_encoder_init
[function]
[call site]
02484
cram_stats_encoding
[function]
[call site]
02485
cram_encoder_init
[function]
[call site]
02486
cram_stats_encoding
[function]
[call site]
02487
cram_encoder_init
[function]
[call site]
02488
cram_stats_encoding
[function]
[call site]
02489
cram_encoder_init
[function]
[call site]
02490
cram_stats_encoding
[function]
[call site]
02491
cram_encoder_init
[function]
[call site]
02492
cram_stats_encoding
[function]
[call site]
02493
cram_encoder_init
[function]
[call site]
02494
cram_stats_encoding
[function]
[call site]
02495
cram_encoder_init
[function]
[call site]
02496
cram_stats_encoding
[function]
[call site]
02497
cram_encoder_init
[function]
[call site]
02498
cram_stats_encoding
[function]
[call site]
02499
cram_encoder_init
[function]
[call site]
02500
cram_encoder_init
[function]
[call site]
02501
cram_encoder_init
[function]
[call site]
02502
cram_encoder_init
[function]
[call site]
02503
cram_encoder_init
[function]
[call site]
02504
hts_log
[function]
[call site]
02505
cram_encode_slice
[function]
[call site]
02506
calloc
[call site]
02507
cram_new_block
[function]
[call site]
02508
cram_new_block
[function]
[call site]
02509
cram_new_block
[function]
[call site]
02510
block_append
[function]
[call site]
02511
cram_allocate_block
[function]
[call site]
02512
cram_new_block
[function]
[call site]
02513
cram_new_block
[function]
[call site]
02514
cram_allocate_block
[function]
[call site]
02515
cram_allocate_block
[function]
[call site]
02516
cram_allocate_block
[function]
[call site]
02517
cram_allocate_block
[function]
[call site]
02518
cram_allocate_block
[function]
[call site]
02519
cram_new_block
[function]
[call site]
02520
cram_allocate_block
[function]
[call site]
02521
cram_new_block
[function]
[call site]
02522
cram_encode_slice_read
[function]
[call site]
02523
hts_log
[function]
[call site]
02524
cram_free_block
[function]
[call site]
02525
cram_free_block
[function]
[call site]
02526
cram_free_block
[function]
[call site]
02527
cram_free_block
[function]
[call site]
02528
cram_compress_slice
[function]
[call site]
02529
cram_compress_block2
[function]
[call site]
02530
cram_compress_block3
[function]
[call site]
02531
pthread_mutex_lock
[call site]
02532
pthread_mutex_unlock
[call site]
02533
cram_compress_by_method
[function]
[call site]
02534
zlib_mem_deflate
[function]
[call site]
02535
deflateInit2_
[call site]
02536
hts_log
[function]
[call site]
02537
hts_log
[function]
[call site]
02538
deflate
[call site]
02539
hts_log
[function]
[call site]
02540
deflate
[call site]
02541
hts_log
[function]
[call site]
02542
deflateEnd
[call site]
02543
hts_log
[function]
[call site]
02544
BZ2_bzBuffToBuffCompress
[call site]
02545
fqz_compress
[function]
[call site]
02546
compress_block_fqz2f
[function]
[call site]
02547
fqz_pick_parameters
[function]
[call site]
02548
calloc
[call site]
02549
fqz_qual_stats
[function]
[call site]
02550
calloc
[call site]
02551
memcmp
[call site]
02552
fast_log
[function]
[call site]
02553
fast_log
[function]
[call site]
02554
fast_log
[function]
[call site]
02555
fast_log
[function]
[call site]
02556
fast_log
[function]
[call site]
02557
fast_log
[function]
[call site]
02558
fast_log
[function]
[call site]
02559
log
[call site]
02560
log
[call site]
02561
log
[call site]
02562
log
[call site]
02563
log
[call site]
02564
log
[call site]
02565
log
[call site]
02566
log
[call site]
02567
log
[call site]
02568
var_put_u32
[function]
[call site]
02569
var_put_u32_safe
[function]
[call site]
02570
fqz_store_parameters
[function]
[call site]
02571
store_array
[function]
[call site]
02572
fqz_store_parameters1
[function]
[call site]
02573
store_array
[function]
[call site]
02574
store_array
[function]
[call site]
02575
store_array
[function]
[call site]
02576
fqz_create_models
[function]
[call site]
02577
RC_SetOutput
[function]
[call site]
02578
RC_SetOutputEnd
[function]
[call site]
02579
RC_StartEncode
[function]
[call site]
02580
compress_new_read
[function]
[call site]
02581
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02582
RC_Encode
[function]
[call site]
02583
RC_ShiftLowCheck
[function]
[call site]
02584
SIMPLE_MODEL256_normalize
[function]
[call site]
02585
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02586
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02587
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02588
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02589
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02590
SIMPLE_MODEL2_normalize
[function]
[call site]
02591
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02592
memcmp
[call site]
02593
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02594
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02595
mm_prefetch
[function]
[call site]
02596
fqz_update_ctx
[function]
[call site]
02597
mm_prefetch
[function]
[call site]
02598
fqz_update_ctx
[function]
[call site]
02599
mm_prefetch
[function]
[call site]
02600
fqz_update_ctx
[function]
[call site]
02601
mm_prefetch
[function]
[call site]
02602
fqz_update_ctx
[function]
[call site]
02603
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02604
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02605
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02606
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02607
mm_prefetch
[function]
[call site]
02608
fqz_update_ctx
[function]
[call site]
02609
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02610
RC_FinishEncode
[function]
[call site]
02611
RC_ShiftLowCheck
[function]
[call site]
02612
RC_OutSize
[function]
[call site]
02613
fqz_destroy_models
[function]
[call site]
02614
fqz_free_parameters
[function]
[call site]
02615
lzma_mem_deflate
[function]
[call site]
02616
lzma_stream_buffer_bound
[call site]
02617
lzma_easy_buffer_encode
[call site]
02618
rans_compress
[function]
[call site]
02619
rans_compress_O1
[function]
[call site]
02620
rans_compress_O0
[function]
[call site]
02621
hist8
[function]
[call site]
02622
htscodecs_tls_calloc
[function]
[call site]
02623
htscodecs_tls_free
[function]
[call site]
02624
__assert_fail
[call site]
02625
RansEncSymbolInit
[function]
[call site]
02626
__assert_fail
[call site]
02627
__assert_fail
[call site]
02628
RansEncInit
[function]
[call site]
02629
RansEncInit
[function]
[call site]
02630
RansEncInit
[function]
[call site]
02631
RansEncInit
[function]
[call site]
02632
RansEncPutSymbol
[function]
[call site]
02633
__assert_fail
[call site]
02634
RansEncPutSymbol
[function]
[call site]
02635
RansEncPutSymbol
[function]
[call site]
02636
RansEncPutSymbol
[function]
[call site]
02637
RansEncPutSymbol
[function]
[call site]
02638
RansEncPutSymbol
[function]
[call site]
02639
RansEncPutSymbol
[function]
[call site]
02640
RansEncFlush
[function]
[call site]
02641
RansEncFlush
[function]
[call site]
02642
RansEncFlush
[function]
[call site]
02643
RansEncFlush
[function]
[call site]
02644
htscodecs_tls_alloc
[function]
[call site]
02645
hist1_4
[function]
[call site]
02646
htscodecs_tls_calloc
[function]
[call site]
02647
htscodecs_tls_free
[function]
[call site]
02648
RansEncSymbolInit
[function]
[call site]
02649
__assert_fail
[call site]
02650
RansEncInit
[function]
[call site]
02651
RansEncInit
[function]
[call site]
02652
RansEncInit
[function]
[call site]
02653
RansEncInit
[function]
[call site]
02654
RansEncPutSymbol
[function]
[call site]
02655
RansEncPutSymbol4
[function]
[call site]
02656
__assert_fail
[call site]
02657
__assert_fail
[call site]
02658
__assert_fail
[call site]
02659
__assert_fail
[call site]
02660
RansEncPutSymbol
[function]
[call site]
02661
RansEncPutSymbol
[function]
[call site]
02662
RansEncPutSymbol
[function]
[call site]
02663
RansEncPutSymbol
[function]
[call site]
02664
RansEncFlush
[function]
[call site]
02665
RansEncFlush
[function]
[call site]
02666
RansEncFlush
[function]
[call site]
02667
RansEncFlush
[function]
[call site]
02668
htscodecs_tls_free
[function]
[call site]
02669
rans_compress_O0
[function]
[call site]
02670
rans_compress_4x16
[function]
[call site]
02671
rans_compress_to_4x16
[function]
[call site]
02672
rans_compress_bound_4x16
[function]
[call site]
02673
var_put_u32
[function]
[call site]
02674
rans_compress_to_4x16
[function]
[call site]
02675
realloc
[call site]
02676
var_put_u32
[function]
[call site]
02677
var_put_u32
[function]
[call site]
02678
var_put_u32
[function]
[call site]
02679
hts_pack
[function]
[call site]
02680
var_put_u32
[function]
[call site]
02681
hts_rle_encode
[function]
[call site]
02682
rle_find_syms
[function]
[call site]
02683
var_put_u32
[function]
[call site]
02684
var_put_u32
[function]
[call site]
02685
var_put_u32
[function]
[call site]
02686
rans_enc_func
[function]
[call site]
02687
pthread_once
[call site]
02688
htscodecs_tls_cpu_init
[function]
[call site]
02689
strerror
[call site]
02690
fprintf
[call site]
02691
fprintf
[call site]
02692
var_put_u32
[function]
[call site]
02693
var_put_u32
[function]
[call site]
02694
var_put_u32
[function]
[call site]
02695
rans_enc_func
[function]
[call site]
02696
arith_compress_to
[function]
[call site]
02697
arith_compress_bound
[function]
[call site]
02698
var_put_u32
[function]
[call site]
02699
var_put_u32
[function]
[call site]
02700
arith_compress_to
[function]
[call site]
02701
arith_compress_to
[function]
[call site]
02702
var_put_u32
[function]
[call site]
02703
var_put_u32
[function]
[call site]
02704
hts_pack
[function]
[call site]
02705
var_put_u32
[function]
[call site]
02706
BZ2_bzBuffToBuffCompress
[call site]
02707
arith_compress_O0_RLE
[function]
[call site]
02708
arith_compress_bound
[function]
[call site]
02709
SIMPLE_MODEL256_init
[function]
[call site]
02710
htscodecs_tls_alloc
[function]
[call site]
02711
SIMPLE_MODEL258_init
[function]
[call site]
02712
RC_SetOutput
[function]
[call site]
02713
RC_SetOutputEnd
[function]
[call site]
02714
RC_StartEncode
[function]
[call site]
02715
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02716
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02717
SIMPLE_MODEL258_normalize
[function]
[call site]
02718
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02719
RC_FinishEncode
[function]
[call site]
02720
htscodecs_tls_free
[function]
[call site]
02721
RC_OutSize
[function]
[call site]
02722
htscodecs_tls_free
[function]
[call site]
02723
arith_compress_O1_RLE
[function]
[call site]
02724
arith_compress_bound
[function]
[call site]
02725
htscodecs_tls_alloc
[function]
[call site]
02726
SIMPLE_MODEL256_init
[function]
[call site]
02727
htscodecs_tls_alloc
[function]
[call site]
02728
htscodecs_tls_free
[function]
[call site]
02729
SIMPLE_MODEL258_init
[function]
[call site]
02730
RC_SetOutput
[function]
[call site]
02731
RC_SetOutputEnd
[function]
[call site]
02732
RC_StartEncode
[function]
[call site]
02733
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02734
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02735
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02736
RC_FinishEncode
[function]
[call site]
02737
htscodecs_tls_free
[function]
[call site]
02738
htscodecs_tls_free
[function]
[call site]
02739
RC_OutSize
[function]
[call site]
02740
htscodecs_tls_free
[function]
[call site]
02741
htscodecs_tls_free
[function]
[call site]
02742
arith_compress_O1
[function]
[call site]
02743
arith_compress_bound
[function]
[call site]
02744
htscodecs_tls_alloc
[function]
[call site]
02745
SIMPLE_MODEL256_init
[function]
[call site]
02746
RC_SetOutput
[function]
[call site]
02747
RC_SetOutputEnd
[function]
[call site]
02748
RC_StartEncode
[function]
[call site]
02749
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02750
RC_FinishEncode
[function]
[call site]
02751
htscodecs_tls_free
[function]
[call site]
02752
RC_OutSize
[function]
[call site]
02753
htscodecs_tls_free
[function]
[call site]
02754
arith_compress_O0
[function]
[call site]
02755
arith_compress_bound
[function]
[call site]
02756
SIMPLE_MODEL256_init
[function]
[call site]
02757
RC_SetOutput
[function]
[call site]
02758
RC_SetOutputEnd
[function]
[call site]
02759
RC_StartEncode
[function]
[call site]
02760
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02761
RC_FinishEncode
[function]
[call site]
02762
RC_OutSize
[function]
[call site]
02763
tok3_encode_names
[function]
[call site]
02764
create_context
[function]
[call site]
02765
build_trie
[function]
[call site]
02766
calloc
[call site]
02767
pool_create
[function]
[call site]
02768
pool_alloc
[function]
[call site]
02769
new_pool
[function]
[call site]
02770
free_context
[function]
[call site]
02771
free_context
[function]
[call site]
02772
encode_name
[function]
[call site]
02773
search_trie
[function]
[call site]
02774
__ctype_b_loc
[call site]
02775
__ctype_b_loc
[call site]
02776
__ctype_b_loc
[call site]
02777
__ctype_b_loc
[call site]
02778
__ctype_b_loc
[call site]
02779
calloc
[call site]
02780
__ctype_b_loc
[call site]
02781
strlen
[call site]
02782
encode_token_dup
[function]
[call site]
02783
encode_token_int
[function]
[call site]
02784
encode_token_type
[function]
[call site]
02785
descriptor_grow
[function]
[call site]
02786
realloc
[call site]
02787
descriptor_grow
[function]
[call site]
02788
encode_token_diff
[function]
[call site]
02789
encode_token_int
[function]
[call site]
02790
encode_token_char
[function]
[call site]
02791
encode_token_type
[function]
[call site]
02792
descriptor_grow
[function]
[call site]
02793
memcmp
[call site]
02794
encode_token_match
[function]
[call site]
02795
encode_token_type
[function]
[call site]
02796
encode_token_alpha
[function]
[call site]
02797
encode_token_type
[function]
[call site]
02798
descriptor_grow
[function]
[call site]
02799
encode_token_alpha
[function]
[call site]
02800
__ctype_b_loc
[call site]
02801
__ctype_b_loc
[call site]
02802
__ctype_b_loc
[call site]
02803
memcmp
[call site]
02804
encode_token_match
[function]
[call site]
02805
encode_token_alpha
[function]
[call site]
02806
encode_token_alpha
[function]
[call site]
02807
__ctype_b_loc
[call site]
02808
encode_token_match
[function]
[call site]
02809
encode_token_int1
[function]
[call site]
02810
encode_token_type
[function]
[call site]
02811
descriptor_grow
[function]
[call site]
02812
encode_token_int1_
[function]
[call site]
02813
descriptor_grow
[function]
[call site]
02814
encode_token_int
[function]
[call site]
02815
encode_token_int1_
[function]
[call site]
02816
encode_token_int
[function]
[call site]
02817
__ctype_b_loc
[call site]
02818
__ctype_b_loc
[call site]
02819
encode_token_match
[function]
[call site]
02820
encode_token_int1
[function]
[call site]
02821
encode_token_int
[function]
[call site]
02822
encode_token_int
[function]
[call site]
02823
encode_token_match
[function]
[call site]
02824
encode_token_char
[function]
[call site]
02825
encode_token_char
[function]
[call site]
02826
encode_token_end
[function]
[call site]
02827
encode_token_type
[function]
[call site]
02828
realloc
[call site]
02829
free_context
[function]
[call site]
02830
arith_compress_bound
[function]
[call site]
02831
free_context
[function]
[call site]
02832
compress
[function]
[call site]
02833
arith_encode
[function]
[call site]
02834
arith_compress_to
[function]
[call site]
02835
var_put_u32
[function]
[call site]
02836
rans_encode
[function]
[call site]
02837
rans_compress_to_4x16
[function]
[call site]
02838
var_put_u32
[function]
[call site]
02839
free_context
[function]
[call site]
02840
memcmp
[call site]
02841
free_context
[function]
[call site]
02842
free_context
[function]
[call site]
02843
pthread_mutex_lock
[call site]
02844
pthread_mutex_unlock
[call site]
02845
pthread_mutex_unlock
[call site]
02846
cram_compress_by_method
[function]
[call site]
02847
cram_block_method2str
[function]
[call site]
02848
hts_log
[function]
[call site]
02849
pthread_mutex_lock
[call site]
02850
pthread_mutex_unlock
[call site]
02851
cram_compress_block3
[function]
[call site]
02852
cram_compress_by_method
[function]
[call site]
02853
hts_log
[function]
[call site]
02854
cram_block_method2str
[function]
[call site]
02855
hts_log
[function]
[call site]
02856
pthread_mutex_lock
[call site]
02857
pthread_mutex_unlock
[call site]
02858
cram_compress_block2
[function]
[call site]
02859
cram_compress_block2
[function]
[call site]
02860
cram_compress_block2
[function]
[call site]
02861
cram_compress_block2
[function]
[call site]
02862
cram_compress_block2
[function]
[call site]
02863
cram_compress_block2
[function]
[call site]
02864
cram_compress_block2
[function]
[call site]
02865
cram_compress_block2
[function]
[call site]
02866
cram_compress_block2
[function]
[call site]
02867
cram_compress_block2
[function]
[call site]
02868
cram_compress_block2
[function]
[call site]
02869
cram_compress_block2
[function]
[call site]
02870
cram_compress_block2
[function]
[call site]
02871
cram_compress_block2
[function]
[call site]
02872
cram_compress_block2
[function]
[call site]
02873
realloc
[call site]
02874
cram_free_block
[function]
[call site]
02875
cram_encode_slice_header
[function]
[call site]
02876
cram_new_block
[function]
[call site]
02877
cram_free_block
[function]
[call site]
02878
cram_free_block
[function]
[call site]
02879
__assert_fail
[call site]
02880
cram_encode_compression_header
[function]
[call site]
02881
cram_new_block
[function]
[call site]
02882
cram_new_block
[function]
[call site]
02883
itf8_put_blk
[function]
[call site]
02884
itf8_put
[function]
[call site]
02885
block_append
[function]
[call site]
02886
itf8_put_blk
[function]
[call site]
02887
itf8_put_blk
[function]
[call site]
02888
itf8_put_blk
[function]
[call site]
02889
itf8_put_blk
[function]
[call site]
02890
itf8_put_blk
[function]
[call site]
02891
kh_destroy_map
[function]
[call site]
02892
kh_init_map
[function]
[call site]
02893
calloc
[call site]
02894
kh_put_map
[function]
[call site]
02895
kh_resize_map
[function]
[call site]
02896
realloc
[call site]
02897
__ac_FNV1a_hash_string
[function]
[call site]
02898
strcmp
[call site]
02899
kh_put_map
[function]
[call site]
02900
kh_put_map
[function]
[call site]
02901
kh_put_map
[function]
[call site]
02902
kh_put_map
[function]
[call site]
02903
kh_put_map
[function]
[call site]
02904
kh_put_map
[function]
[call site]
02905
kh_put_map
[function]
[call site]
02906
kh_put_map
[function]
[call site]
02907
block_append
[function]
[call site]
02908
block_append_char
[function]
[call site]
02909
sub_idx
[function]
[call site]
02910
sub_idx
[function]
[call site]
02911
sub_idx
[function]
[call site]
02912
sub_idx
[function]
[call site]
02913
sub_idx
[function]
[call site]
02914
sub_idx
[function]
[call site]
02915
sub_idx
[function]
[call site]
02916
sub_idx
[function]
[call site]
02917
sub_idx
[function]
[call site]
02918
sub_idx
[function]
[call site]
02919
sub_idx
[function]
[call site]
02920
sub_idx
[function]
[call site]
02921
sub_idx
[function]
[call site]
02922
sub_idx
[function]
[call site]
02923
sub_idx
[function]
[call site]
02924
sub_idx
[function]
[call site]
02925
sub_idx
[function]
[call site]
02926
sub_idx
[function]
[call site]
02927
sub_idx
[function]
[call site]
02928
sub_idx
[function]
[call site]
02929
block_append
[function]
[call site]
02930
block_append
[function]
[call site]
02931
hts_log
[function]
[call site]
02932
block_append
[function]
[call site]
02933
block_append
[function]
[call site]
02934
block_append
[function]
[call site]
02935
hts_log
[function]
[call site]
02936
cram_free_block
[function]
[call site]
02937
cram_ref_decr
[function]
[call site]
02938
cram_ref_decr
[function]
[call site]
02939
cram_flush_container2
[function]
[call site]
02940
htell
[function]
[call site]
02941
cram_write_container
[function]
[call site]
02942
itf8_put
[function]
[call site]
02943
crc32
[call site]
02944
hwrite
[function]
[call site]
02945
htell
[function]
[call site]
02946
cram_write_block
[function]
[call site]
02947
__assert_fail
[call site]
02948
hputc
[function]
[call site]
02949
hputc2
[function]
[call site]
02950
flush_buffer
[function]
[call site]
02951
hputc
[function]
[call site]
02952
hwrite
[function]
[call site]
02953
hwrite
[function]
[call site]
02954
hwrite
[function]
[call site]
02955
crc32
[call site]
02956
crc32
[call site]
02957
crc32
[call site]
02958
int32_encode
[function]
[call site]
02959
hwrite
[function]
[call site]
02960
htell
[function]
[call site]
02961
cram_write_block
[function]
[call site]
02962
cram_write_block
[function]
[call site]
02963
htell
[function]
[call site]
02964
cram_index_slice
[function]
[call site]
02965
hts_log
[function]
[call site]
02966
cram_index_build_multiref
[function]
[call site]
02967
cram_decode_slice
[function]
[call site]
02968
cram_dependent_data_series
[function]
[call site]
02969
cram_uncompress_block
[function]
[call site]
02970
cram_uncompress_block
[function]
[call site]
02971
calloc
[call site]
02972
cram_codec_to_id
[function]
[call site]
02973
cram_codec_to_id
[function]
[call site]
02974
cram_codec_to_id
[function]
[call site]
02975
hts_log
[function]
[call site]
02976
cram_uncompress_block
[function]
[call site]
02977
cram_codec_to_id
[function]
[call site]
02978
cram_uncompress_block
[function]
[call site]
02979
cram_codec_to_id
[function]
[call site]
02980
cram_codec_to_id
[function]
[call site]
02981
block_resize_exact
[function]
[call site]
02982
block_resize_exact
[function]
[call site]
02983
block_resize_exact
[function]
[call site]
02984
strcmp
[call site]
02985
hts_log
[function]
[call site]
02986
cram_get_block_by_id
[function]
[call site]
02987
cram_uncompress_block
[function]
[call site]
02988
hts_log
[function]
[call site]
02989
cram_get_ref
[function]
[call site]
02990
hts_log
[function]
[call site]
02991
pthread_mutex_lock
[call site]
02992
pthread_mutex_lock
[call site]
02993
pthread_mutex_unlock
[call site]
02994
pthread_mutex_unlock
[call site]
02995
hts_log
[function]
[call site]
02996
memcmp
[call site]
02997
hts_log
[function]
[call site]
02998
hts_log
[function]
[call site]
02999
hts_md5_init
[function]
[call site]
03000
hts_md5_update
[function]
[call site]
03001
hts_md5_final
[function]
[call site]
03002
hts_md5_destroy
[function]
[call site]
03003
cram_get_block_by_id
[function]
[call site]
03004
hts_md5_init
[function]
[call site]
03005
hts_md5_update
[function]
[call site]
03006
hts_md5_final
[function]
[call site]
03007
hts_md5_destroy
[function]
[call site]
03008
memcmp
[call site]
03009
sam_hdr_tid2name
[function]
[call site]
03010
hts_log
[function]
[call site]
03011
md5_print
[function]
[call site]
03012
hts_log
[function]
[call site]
03013
md5_print
[function]
[call site]
03014
hts_log
[function]
[call site]
03015
sam_hdr_find_tag_id
[function]
[call site]
03016
sam_hdr_fill_hrecs
[function]
[call site]
03017
sam_hrecs_find_type_id
[function]
[call site]
03018
sam_hrecs_find_key
[function]
[call site]
03019
kputsn
[function]
[call site]
03020
hts_log
[function]
[call site]
03021
hts_log
[function]
[call site]
03022
ks_free
[function]
[call site]
03023
ks_initialize
[function]
[call site]
03024
pthread_mutex_lock
[call site]
03025
pthread_mutex_lock
[call site]
03026
calloc
[call site]
03027
pthread_mutex_unlock
[call site]
03028
pthread_mutex_unlock
[call site]
03029
pthread_mutex_lock
[call site]
03030
pthread_mutex_unlock
[call site]
03031
cram_get_ref
[function]
[call site]
03032
pthread_mutex_lock
[call site]
03033
pthread_mutex_unlock
[call site]
03034
pthread_mutex_lock
[call site]
03035
pthread_mutex_unlock
[call site]
03036
cram_ref_decr
[function]
[call site]
03037
pthread_mutex_lock
[call site]
03038
pthread_mutex_lock
[call site]
03039
pthread_mutex_unlock
[call site]
03040
pthread_mutex_unlock
[call site]
03041
hts_log
[function]
[call site]
03042
hts_log
[function]
[call site]
03043
pthread_mutex_lock
[call site]
03044
pthread_mutex_unlock
[call site]
03045
cram_decode_tlen
[function]
[call site]
03046
cram_decode_tlen
[function]
[call site]
03047
cram_decode_tlen
[function]
[call site]
03048
cram_decode_aux_1_0
[function]
[call site]
03049
map_find
[function]
[call site]
03050
block_append
[function]
[call site]
03051
cram_decode_aux
[function]
[call site]
03052
strlen
[call site]
03053
sam_hdr_line_name
[function]
[call site]
03054
sam_hdr_fill_hrecs
[function]
[call site]
03055
hts_log
[function]
[call site]
03056
hts_log
[function]
[call site]
03057
hts_log
[function]
[call site]
03058
hts_log
[function]
[call site]
03059
strlen
[call site]
03060
block_append
[function]
[call site]
03061
block_append
[function]
[call site]
03062
block_append_char
[function]
[call site]
03063
block_append
[function]
[call site]
03064
map_find
[function]
[call site]
03065
block_append
[function]
[call site]
03066
hts_log
[function]
[call site]
03067
block_resize
[function]
[call site]
03068
block_resize
[function]
[call site]
03069
hts_log
[function]
[call site]
03070
cram_decode_seq
[function]
[call site]
03071
block_append
[function]
[call site]
03072
realloc
[call site]
03073
hts_log
[function]
[call site]
03074
hts_log
[function]
[call site]
03075
memchr
[call site]
03076
add_md_char
[function]
[call site]
03077
block_append_uint
[function]
[call site]
03078
block_grow
[function]
[call site]
03079
append_uint32
[function]
[call site]
03080
block_append_char
[function]
[call site]
03081
block_append_uint
[function]
[call site]
03082
add_md_char
[function]
[call site]
03083
block_append_uint
[function]
[call site]
03084
block_append_char
[function]
[call site]
03085
block_append
[function]
[call site]
03086
block_append_char
[function]
[call site]
03087
block_append
[function]
[call site]
03088
block_append_uint
[function]
[call site]
03089
block_append_uint
[function]
[call site]
03090
block_append_uint
[function]
[call site]
03091
block_append_char
[function]
[call site]
03092
block_append_uint
[function]
[call site]
03093
block_append_char
[function]
[call site]
03094
hts_log
[function]
[call site]
03095
hts_log
[function]
[call site]
03096
memchr
[call site]
03097
add_md_char
[function]
[call site]
03098
realloc
[call site]
03099
block_append_uint
[function]
[call site]
03100
realloc
[call site]
03101
block_append_char
[function]
[call site]
03102
block_append
[function]
[call site]
03103
hts_log
[function]
[call site]
03104
pthread_mutex_lock
[call site]
03105
cram_ref_decr
[function]
[call site]
03106
cram_ref_decr
[function]
[call site]
03107
cram_decode_slice_xref
[function]
[call site]
03108
hts_log
[function]
[call site]
03109
cram_free_block
[function]
[call site]
03110
block_resize_exact
[function]
[call site]
03111
block_resize_exact
[function]
[call site]
03112
block_resize_exact
[function]
[call site]
03113
block_resize_exact
[function]
[call site]
03114
pthread_mutex_lock
[call site]
03115
cram_ref_decr
[function]
[call site]
03116
pthread_mutex_unlock
[call site]
03117
hts_log
[function]
[call site]
03118
snprintf
[call site]
03119
strlen
[call site]
03120
bgzf_write
[function]
[call site]
03121
hwrite
[function]
[call site]
03122
__assert_fail
[call site]
03123
lazy_flush
[function]
[call site]
03124
mt_queue
[function]
[call site]
03125
bgzf_flush
[function]
[call site]
03126
snprintf
[call site]
03127
strlen
[call site]
03128
bgzf_write
[function]
[call site]
03129
snprintf
[call site]
03130
strlen
[call site]
03131
bgzf_write
[function]
[call site]
03132
__errno_location
[call site]
03133
hts_tpool_dispatch2
[function]
[call site]
03134
hts_tpool_dispatch3
[function]
[call site]
03135
cram_flush_thread
[function]
[call site]
03136
cram_encode_container
[function]
[call site]
03137
hts_log
[function]
[call site]
03138
__errno_location
[call site]
03139
cram_flush_result
[function]
[call site]
03140
hts_tpool_next_result
[function]
[call site]
03141
pthread_mutex_lock
[call site]
03142
hts_tpool_next_result_locked
[function]
[call site]
03143
pthread_mutex_unlock
[call site]
03144
hts_tpool_result_data
[function]
[call site]
03145
hts_tpool_delete_result
[function]
[call site]
03146
cram_flush_container2
[function]
[call site]
03147
cram_free_slice
[function]
[call site]
03148
cram_free_slice
[function]
[call site]
03149
cram_free_container
[function]
[call site]
03150
hts_tpool_delete_result
[function]
[call site]
03151
cram_free_container
[function]
[call site]
03152
hts_usleep
[function]
[call site]
03153
cram_drain_rqueue
[function]
[call site]
03154
hts_tpool_process_flush
[function]
[call site]
03155
cram_flush_result
[function]
[call site]
03156
hts_tpool_process_destroy
[function]
[call site]
03157
pthread_mutex_destroy
[call site]
03158
pthread_mutex_destroy
[call site]
03159
pthread_mutex_destroy
[call site]
03160
pthread_mutex_destroy
[call site]
03161
cram_write_eof_block
[function]
[call site]
03162
cram_encode_compression_header
[function]
[call site]
03163
cram_write_container
[function]
[call site]
03164
cram_write_block
[function]
[call site]
03165
cram_close
[function]
[call site]
03166
free_bam_list
[function]
[call site]
03167
hclose
[function]
[call site]
03168
cram_free_file_def
[function]
[call site]
03169
sam_hdr_destroy
[function]
[call site]
03170
cram_free_container
[function]
[call site]
03171
cram_free_container
[function]
[call site]
03172
refs_free
[function]
[call site]
03173
kh_destroy_m_metrics
[function]
[call site]
03174
cram_index_free
[function]
[call site]
03175
cram_index_free_recurse
[function]
[call site]
03176
cram_index_free_recurse
[function]
[call site]
03177
hts_tpool_destroy
[function]
[call site]
03178
bgzf_close
[function]
[call site]
03179
cram_free_block
[function]
[call site]
03180
kh_destroy_map
[function]
[call site]
03181
cram_free_block
[function]
[call site]
03182
sam_state_destroy
[function]
[call site]
03183
fastq_state_destroy
[function]
[call site]
03184
kh_destroy_tag
[function]
[call site]
03185
ks_free
[function]
[call site]
03186
ks_initialize
[function]
[call site]
03187
ks_free
[function]
[call site]
03188
ks_free
[function]
[call site]
03189
regfree
[call site]
03190
bgzf_close
[function]
[call site]
03191
hclose
[function]
[call site]
03192
hts_idx_close_otf_fp
[function]
[call site]
03193
need_idx_ugly_delay_hack
[function]
[call site]
03194
idx_write_uint64
[function]
[call site]
03195
ed_is_big
[function]
[call site]
03196
ed_swap_8
[function]
[call site]
03197
bgzf_write
[function]
[call site]
03198
bgzf_close
[function]
[call site]
03199
__errno_location
[call site]
03200
sam_hdr_destroy
[function]
[call site]
03201
hts_idx_destroy
[function]
[call site]
03202
cram_index_free
[function]
[call site]
03203
kh_destroy_bin
[function]
[call site]
03204
hts_filter_free
[function]
[call site]
03205
__errno_location
[call site]
03206
view_sam
[function]
[call site]
03207
abort
[call site]
03208
hopen
[function]
[call site]
03209
hts_hopen
[function]
[call site]
03210
hclose
[function]
[call site]
03211
abort
[call site]
03212
hts_open
[function]
[call site]
03213
hts_open_format
[function]
[call site]
03214
strncpy
[call site]
03215
strchr
[call site]
03216
strchr
[call site]
03217
strchr
[call site]
03218
strstr
[call site]
03219
strdup
[call site]
03220
hopen
[function]
[call site]
03221
hts_hopen
[function]
[call site]
03222
hts_opt_apply
[function]
[call site]
03223
__errno_location
[call site]
03224
__errno_location
[call site]
03225
__errno_location
[call site]
03226
__errno_location
[call site]
03227
strerror
[call site]
03228
hts_log
[function]
[call site]
03229
hclose_abruptly
[function]
[call site]
03230
abort
[call site]
03231
sam_hdr_read
[function]
[call site]
03232
__errno_location
[call site]
03233
bam_hdr_read
[function]
[call site]
03234
bgzf_check_EOF
[function]
[call site]
03235
pthread_mutex_lock
[call site]
03236
pthread_cond_signal
[call site]
03237
hts_tpool_wake_dispatch
[function]
[call site]
03238
pthread_mutex_unlock
[call site]
03239
pthread_cond_wait
[call site]
03240
pthread_cond_signal
[call site]
03241
abort
[call site]
03242
pthread_mutex_unlock
[call site]
03243
bgzf_check_EOF_common
[function]
[call site]
03244
htell
[function]
[call site]
03245
hseek
[function]
[call site]
03246
__errno_location
[call site]
03247
hclearerr
[function]
[call site]
03248
__errno_location
[call site]
03249
hclearerr
[function]
[call site]
03250
hread
[function]
[call site]
03251
hseek
[function]
[call site]
03252
memcmp
[call site]
03253
perror
[call site]
03254
hts_log
[function]
[call site]
03255
bgzf_read
[function]
[call site]
03256
memcmp
[call site]
03257
hts_log
[function]
[call site]
03258
sam_hdr_init
[function]
[call site]
03259
bgzf_read
[function]
[call site]
03260
le_to_u32
[function]
[call site]
03261
bgzf_read
[function]
[call site]
03262
bgzf_read
[function]
[call site]
03263
ed_swap_4p
[function]
[call site]
03264
ed_swap_4
[function]
[call site]
03265
calloc
[call site]
03266
calloc
[call site]
03267
bgzf_read
[function]
[call site]
03268
ed_swap_4p
[function]
[call site]
03269
bgzf_read
[function]
[call site]
03270
realloc
[call site]
03271
bgzf_read
[function]
[call site]
03272
ed_swap_4p
[function]
[call site]
03273
hts_log
[function]
[call site]
03274
hts_log
[function]
[call site]
03275
hts_log
[function]
[call site]
03276
sam_hdr_destroy
[function]
[call site]
03277
sam_hdr_sanitise
[function]
[call site]
03278
hts_log
[function]
[call site]
03279
sam_hdr_destroy
[function]
[call site]
03280
hts_log
[function]
[call site]
03281
hts_log
[function]
[call site]
03282
sam_hdr_destroy
[function]
[call site]
03283
realloc
[call site]
03284
sam_hdr_destroy
[function]
[call site]
03285
sam_hdr_dup
[function]
[call site]
03286
sam_hdr_init
[function]
[call site]
03287
calloc
[call site]
03288
calloc
[call site]
03289
strdup
[call site]
03290
sam_hdr_dup_sdict
[function]
[call site]
03291
kh_init_s2i
[function]
[call site]
03292
kh_get_s2i
[function]
[call site]
03293
kh_put_s2i
[function]
[call site]
03294
kh_destroy_s2i
[function]
[call site]
03295
sam_hrecs_rebuild_text
[function]
[call site]
03296
kputsn
[function]
[call site]
03297
sam_hrecs_rebuild_lines
[function]
[call site]
03298
kputsn
[function]
[call site]
03299
build_header_line
[function]
[call site]
03300
kputc_
[function]
[call site]
03301
kputsn
[function]
[call site]
03302
kputc_
[function]
[call site]
03303
kputsn
[function]
[call site]
03304
kputc
[function]
[call site]
03305
ks_release
[function]
[call site]
03306
ks_release
[function]
[call site]
03307
sam_hdr_update_target_arrays
[function]
[call site]
03308
sam_hdr_destroy
[function]
[call site]
03309
sam_hdr_sanitise
[function]
[call site]
03310
sam_hdr_create
[function]
[call site]
03311
sam_hdr_init
[function]
[call site]
03312
sam_hdr_build_from_sam_file
[function]
[call site]
03313
sam_hrecs_new
[function]
[call site]
03314
hts_getline
[function]
[call site]
03315
hts_log
[function]
[call site]
03316
abort
[call site]
03317
kgetline2
[function]
[call site]
03318
ks_resize
[function]
[call site]
03319
hgetln
[function]
[call site]
03320
herrno
[function]
[call site]
03321
__errno_location
[call site]
03322
bgzf_getline
[function]
[call site]
03323
bgzf_read_block
[function]
[call site]
03324
memchr
[call site]
03325
ks_expand
[function]
[call site]
03326
bgzf_htell
[function]
[call site]
03327
abort
[call site]
03328
isalpha_c
[function]
[call site]
03329
sam_hrecs_error
[function]
[call site]
03330
strncmp
[call site]
03331
kputc
[function]
[call site]
03332
valid_sam_header_type
[function]
[call site]
03333
hts_log
[function]
[call site]
03334
warn_if_known_stderr
[function]
[call site]
03335
sam_hrecs_parse_single_line
[function]
[call site]
03336
TYPEKEY
[function]
[call site]
03337
kputsn
[function]
[call site]
03338
kputc
[function]
[call site]
03339
bgzf_peek
[function]
[call site]
03340
bgzf_read_block
[function]
[call site]
03341
hts_log
[function]
[call site]
03342
hpeek
[function]
[call site]
03343
strstr
[call site]
03344
hopen
[function]
[call site]
03345
kgetline
[function]
[call site]
03346
strlen
[call site]
03347
hgets
[function]
[call site]
03348
strchr
[call site]
03349
strtoll
[call site]
03350
kputs
[function]
[call site]
03351
kputsn
[function]
[call site]
03352
kputs
[function]
[call site]
03353
kputll
[function]
[call site]
03354
kputc
[function]
[call site]
03355
sam_hrecs_parse_single_line
[function]
[call site]
03356
ks_free
[function]
[call site]
03357
hclose
[function]
[call site]
03358
hts_log
[function]
[call site]
03359
kh_grow_to_fit_m_s2i
[function]
[call site]
03360
realloc
[call site]
03361
sam_hrecs_update_hashes
[function]
[call site]
03362
kputsn
[function]
[call site]
03363
ks_release
[function]
[call site]
03364
sam_hdr_update_target_arrays
[function]
[call site]
03365
ks_free
[function]
[call site]
03366
sam_hdr_destroy
[function]
[call site]
03367
sam_hdr_destroy
[function]
[call site]
03368
sam_hdr_sanitise
[function]
[call site]
03369
sam_hdr_init
[function]
[call site]
03370
__errno_location
[call site]
03371
__errno_location
[call site]
03372
sam_hdr_incr_ref
[function]
[call site]
03373
hts_close_or_abort
[function]
[call site]
03374
hts_close
[function]
[call site]
03375
abort
[call site]
03376
hts_close
[function]
[call site]
03377
hts_close
[function]
[call site]
03378
sam_hdr_count_lines
[function]
[call site]
03379
sam_hdr_fill_hrecs
[function]
[call site]
03380
sam_hrecs_find_type_id
[function]
[call site]
03381
sam_hdr_write
[function]
[call site]
03382
__errno_location
[call site]
03383
bam_hdr_write
[function]
[call site]
03384
sam_hrecs_rebuild_text
[function]
[call site]
03385
hts_log
[function]
[call site]
03386
hts_log
[function]
[call site]
03387
hts_log
[function]
[call site]
03388
hts_log
[function]
[call site]
03389
hts_log
[function]
[call site]
03390
hts_log
[function]
[call site]
03391
bgzf_write
[function]
[call site]
03392
ed_swap_4
[function]
[call site]
03393
bgzf_write
[function]
[call site]
03394
bgzf_write
[function]
[call site]
03395
ed_swap_4
[function]
[call site]
03396
bgzf_write
[function]
[call site]
03397
bgzf_write
[function]
[call site]
03398
bgzf_write
[function]
[call site]
03399
bgzf_write
[function]
[call site]
03400
strlen
[call site]
03401
ed_swap_4
[function]
[call site]
03402
bgzf_write
[function]
[call site]
03403
bgzf_write
[function]
[call site]
03404
bgzf_write
[function]
[call site]
03405
ed_swap_4
[function]
[call site]
03406
bgzf_write
[function]
[call site]
03407
bgzf_write
[function]
[call site]
03408
bgzf_flush
[function]
[call site]
03409
cram_set_header2
[function]
[call site]
03410
sam_hdr_destroy
[function]
[call site]
03411
sam_hdr_dup
[function]
[call site]
03412
refs_from_header
[function]
[call site]
03413
cram_load_reference
[function]
[call site]
03414
cram_write_SAM_hdr
[function]
[call site]
03415
cram_write_file_def
[function]
[call site]
03416
hwrite
[function]
[call site]
03417
sam_hrecs_find_rg
[function]
[call site]
03418
sam_hdr_add_line
[function]
[call site]
03419
sam_hdr_fill_hrecs
[function]
[call site]
03420
sam_hrecs_vadd
[function]
[call site]
03421
rebuild_target_arrays
[function]
[call site]
03422
redact_header_text
[function]
[call site]
03423
refs_from_header
[function]
[call site]
03424
refs2id
[function]
[call site]
03425
sam_hrecs_find_type_id
[function]
[call site]
03426
sam_hrecs_find_key
[function]
[call site]
03427
cram_get_ref
[function]
[call site]
03428
hts_log
[function]
[call site]
03429
hts_log
[function]
[call site]
03430
hts_log
[function]
[call site]
03431
pthread_mutex_lock
[call site]
03432
pthread_mutex_unlock
[call site]
03433
hts_md5_init
[function]
[call site]
03434
hts_md5_update
[function]
[call site]
03435
hts_md5_final
[function]
[call site]
03436
hts_md5_destroy
[function]
[call site]
03437
cram_ref_decr
[function]
[call site]
03438
hts_md5_hex
[function]
[call site]
03439
sam_hdr_update_line
[function]
[call site]
03440
sam_hdr_fill_hrecs
[function]
[call site]
03441
sam_hrecs_find_type_id
[function]
[call site]
03442
check_for_name_update
[function]
[call site]
03443
TYPEKEY
[function]
[call site]
03444
TYPEKEY
[function]
[call site]
03445
TYPEKEY
[function]
[call site]
03446
sam_hrecs_find_key
[function]
[call site]
03447
__assert_fail
[call site]
03448
strcmp
[call site]
03449
strcmp
[call site]
03450
kh_get_m_s2i
[function]
[call site]
03451
hts_log
[function]
[call site]
03452
TYPEKEY
[function]
[call site]
03453
hts_log
[function]
[call site]
03454
sam_hrecs_vupdate
[function]
[call site]
03455
kh_get_m_s2i
[function]
[call site]
03456
sam_hrecs_find_key
[function]
[call site]
03457
__assert_fail
[call site]
03458
__assert_fail
[call site]
03459
__assert_fail
[call site]
03460
kh_del_m_s2i
[function]
[call site]
03461
kh_put_m_s2i
[function]
[call site]
03462
hts_log
[function]
[call site]
03463
TYPEKEY
[function]
[call site]
03464
sam_hrecs_update_hashes
[function]
[call site]
03465
rebuild_target_arrays
[function]
[call site]
03466
redact_header_text
[function]
[call site]
03467
full_path
[function]
[call site]
03468
strlen
[call site]
03469
hisremote
[function]
[call site]
03470
hts_log
[function]
[call site]
03471
strncpy
[call site]
03472
toupper_c
[function]
[call site]
03473
strncpy
[call site]
03474
getcwd
[call site]
03475
strlen
[call site]
03476
strncpy
[call site]
03477
snprintf
[call site]
03478
sam_hdr_update_line
[function]
[call site]
03479
sam_hdr_length
[function]
[call site]
03480
sam_hdr_rebuild
[function]
[call site]
03481
rebuild_target_arrays
[function]
[call site]
03482
hts_log
[function]
[call site]
03483
sam_hdr_link_pg
[function]
[call site]
03484
sam_hdr_fill_hrecs
[function]
[call site]
03485
realloc
[call site]
03486
calloc
[call site]
03487
__assert_fail
[call site]
03488
kh_get_m_s2i
[function]
[call site]
03489
hts_log
[function]
[call site]
03490
redact_header_text
[function]
[call site]
03491
hts_log
[function]
[call site]
03492
sam_hrecs_rebuild_text
[function]
[call site]
03493
ks_free
[function]
[call site]
03494
hts_log
[function]
[call site]
03495
ks_len
[function]
[call site]
03496
ks_release
[function]
[call site]
03497
hts_log
[function]
[call site]
03498
int32_encode
[function]
[call site]
03499
sam_hdr_str
[function]
[call site]
03500
sam_hdr_rebuild
[function]
[call site]
03501
hwrite
[function]
[call site]
03502
cram_new_block
[function]
[call site]
03503
cram_new_container
[function]
[call site]
03504
calloc
[call site]
03505
calloc
[call site]
03506
cram_new_compression_header
[function]
[call site]
03507
calloc
[call site]
03508
cram_new_block
[function]
[call site]
03509
kh_init_m_s2i
[function]
[call site]
03510
cram_free_block
[function]
[call site]
03511
string_pool_create
[function]
[call site]
03512
kh_destroy_m_s2i
[function]
[call site]
03513
cram_free_block
[function]
[call site]
03514
cram_stats_create
[function]
[call site]
03515
calloc
[call site]
03516
kh_init_m_tagmap
[function]
[call site]
03517
calloc
[call site]
03518
cram_free_block
[function]
[call site]
03519
cram_free_container
[function]
[call site]
03520
int32_put_blk
[function]
[call site]
03521
block_append
[function]
[call site]
03522
sam_hdr_str
[function]
[call site]
03523
block_append
[function]
[call site]
03524
cram_compress_block
[function]
[call site]
03525
cram_compress_block2
[function]
[call site]
03526
cram_free_block
[function]
[call site]
03527
cram_free_container
[function]
[call site]
03528
calloc
[call site]
03529
cram_free_block
[function]
[call site]
03530
cram_free_container
[function]
[call site]
03531
block_append
[function]
[call site]
03532
cram_write_container
[function]
[call site]
03533
cram_free_block
[function]
[call site]
03534
cram_free_container
[function]
[call site]
03535
cram_write_block
[function]
[call site]
03536
cram_free_block
[function]
[call site]
03537
cram_free_container
[function]
[call site]
03538
block_resize
[function]
[call site]
03539
cram_write_block
[function]
[call site]
03540
cram_free_block
[function]
[call site]
03541
cram_free_container
[function]
[call site]
03542
cram_free_block
[function]
[call site]
03543
cram_free_container
[function]
[call site]
03544
hflush
[function]
[call site]
03545
sam_hrecs_rebuild_text
[function]
[call site]
03546
strstr
[call site]
03547
bgzf_write
[function]
[call site]
03548
hwrite
[function]
[call site]
03549
kputsn
[function]
[call site]
03550
kputs
[function]
[call site]
03551
kputsn
[function]
[call site]
03552
kputw
[function]
[call site]
03553
kputc
[function]
[call site]
03554
bgzf_write
[function]
[call site]
03555
hwrite
[function]
[call site]
03556
bgzf_flush
[function]
[call site]
03557
hflush
[function]
[call site]
03558
__errno_location
[call site]
03559
sam_hdr_dup
[function]
[call site]
03560
sam_hdr_destroy
[function]
[call site]
03561
bam_init1
[function]
[call site]
03562
sam_read1
[function]
[call site]
03563
sam_read1_bam
[function]
[call site]
03564
bam_read1
[function]
[call site]
03565
bgzf_read_small
[function]
[call site]
03566
bgzf_read
[function]
[call site]
03567
ed_swap_4p
[function]
[call site]
03568
bgzf_read
[function]
[call site]
03569
le_to_u32
[function]
[call site]
03570
le_to_i32
[function]
[call site]
03571
le_to_u32
[function]
[call site]
03572
le_to_u32
[function]
[call site]
03573
le_to_u32
[function]
[call site]
03574
le_to_i32
[function]
[call site]
03575
le_to_i32
[function]
[call site]
03576
realloc_bam_data
[function]
[call site]
03577
sam_realloc_bam_data
[function]
[call site]
03578
__errno_location
[call site]
03579
__errno_location
[call site]
03580
bam_get_mempolicy
[function]
[call site]
03581
realloc
[call site]
03582
bam_get_mempolicy
[function]
[call site]
03583
bam_set_mempolicy
[function]
[call site]
03584
bgzf_read_small
[function]
[call site]
03585
fixup_missing_qname_nul
[function]
[call site]
03586
realloc_bam_data
[function]
[call site]
03587
bgzf_read_small
[function]
[call site]
03588
swap_data
[function]
[call site]
03589
ed_swap_4p
[function]
[call site]
03590
bam_tag2cigar
[function]
[call site]
03591
bam_aux_get
[function]
[call site]
03592
__errno_location
[call site]
03593
__errno_location
[call site]
03594
__errno_location
[call site]
03595
le_to_u32
[function]
[call site]
03596
possibly_expand_bam_data
[function]
[call site]
03597
__errno_location
[call site]
03598
sam_realloc_bam_data
[function]
[call site]
03599
bam_endpos
[function]
[call site]
03600
bam_cigar2rlen
[function]
[call site]
03601
hts_reg2bin
[function]
[call site]
03602
hts_log
[function]
[call site]
03603
bam_cigar2rqlens
[function]
[call site]
03604
hts_reg2bin
[function]
[call site]
03605
hts_log
[function]
[call site]
03606
__errno_location
[call site]
03607
sam_read1_cram
[function]
[call site]
03608
cram_get_bam_seq
[function]
[call site]
03609
cram_get_seq
[function]
[call site]
03610
cram_next_slice
[function]
[call site]
03611
cram_first_slice
[function]
[call site]
03612
cram_free_container
[function]
[call site]
03613
cram_read_container
[function]
[call site]
03614
cram_seek
[function]
[call site]
03615
cram_free_container
[function]
[call site]
03616
cram_read_container
[function]
[call site]
03617
cram_read_block
[function]
[call site]
03618
cram_decode_compression_header
[function]
[call site]
03619
calloc
[call site]
03620
cram_uncompress_block
[function]
[call site]
03621
kh_init_map
[function]
[call site]
03622
cram_free_compression_header
[function]
[call site]
03623
cram_free_compression_header
[function]
[call site]
03624
kh_put_map
[function]
[call site]
03625
cram_free_compression_header
[function]
[call site]
03626
kh_put_map
[function]
[call site]
03627
cram_free_compression_header
[function]
[call site]
03628
kh_put_map
[function]
[call site]
03629
cram_free_compression_header
[function]
[call site]
03630
kh_put_map
[function]
[call site]
03631
cram_free_compression_header
[function]
[call site]
03632
cram_free_compression_header
[function]
[call site]
03633
kh_put_map
[function]
[call site]
03634
cram_free_compression_header
[function]
[call site]
03635
cram_decode_TD
[function]
[call site]
03636
cram_new_block
[function]
[call site]
03637
hts_log
[function]
[call site]
03638
cram_free_block
[function]
[call site]
03639
cram_free_block
[function]
[call site]
03640
cram_free_block
[function]
[call site]
03641
block_append
[function]
[call site]
03642
block_append_char
[function]
[call site]
03643
calloc
[call site]
03644
cram_free_block
[function]
[call site]
03645
cram_free_block
[function]
[call site]
03646
cram_free_compression_header
[function]
[call site]
03647
kh_put_map
[function]
[call site]
03648
cram_free_compression_header
[function]
[call site]
03649
hts_log
[function]
[call site]
03650
cram_free_compression_header
[function]
[call site]
03651
cram_free_compression_header
[function]
[call site]
03652
cram_free_compression_header
[function]
[call site]
03653
hts_log
[function]
[call site]
03654
hts_log
[function]
[call site]
03655
cram_decoder_init
[function]
[call site]
03656
cram_encoding2str
[function]
[call site]
03657
hts_log
[function]
[call site]
03658
cram_free_compression_header
[function]
[call site]
03659
cram_free_compression_header
[function]
[call site]
03660
cram_free_compression_header
[function]
[call site]
03661
cram_free_compression_header
[function]
[call site]
03662
cram_decoder_init
[function]
[call site]
03663
cram_free_compression_header
[function]
[call site]
03664
cram_free_compression_header
[function]
[call site]
03665
sam_hrecs_sort_order
[function]
[call site]
03666
TYPEKEY
[function]
[call site]
03667
kh_get_sam_hrecs_t
[function]
[call site]
03668
strcmp
[call site]
03669
strcmp
[call site]
03670
strcmp
[call site]
03671
strcmp
[call site]
03672
hts_log
[function]
[call site]
03673
pthread_mutex_lock
[call site]
03674
pthread_mutex_unlock
[call site]
03675
cram_free_slice
[function]
[call site]
03676
cram_free_container
[function]
[call site]
03677
cram_read_container
[function]
[call site]
03678
cram_free_container
[function]
[call site]
03679
cram_free_container
[function]
[call site]
03680
cram_free_container
[function]
[call site]
03681
cram_free_container
[function]
[call site]
03682
hseek
[function]
[call site]
03683
cram_read_block
[function]
[call site]
03684
cram_decode_compression_header
[function]
[call site]
03685
sam_hrecs_sort_order
[function]
[call site]
03686
pthread_mutex_lock
[call site]
03687
pthread_mutex_unlock
[call site]
03688
cram_free_container
[function]
[call site]
03689
cram_read_slice
[function]
[call site]
03690
cram_read_block
[function]
[call site]
03691
calloc
[call site]
03692
cram_decode_slice_header
[function]
[call site]
03693
cram_uncompress_block
[function]
[call site]
03694
calloc
[call site]
03695
hts_log
[function]
[call site]
03696
cram_content_type2str
[function]
[call site]
03697
hts_log
[function]
[call site]
03698
hts_log
[function]
[call site]
03699
calloc
[call site]
03700
cram_read_block
[function]
[call site]
03701
calloc
[call site]
03702
cram_new_block
[function]
[call site]
03703
cram_new_block
[function]
[call site]
03704
cram_new_block
[function]
[call site]
03705
cram_new_block
[function]
[call site]
03706
cram_new_block
[function]
[call site]
03707
cram_new_block
[function]
[call site]
03708
cram_free_block
[function]
[call site]
03709
cram_free_slice
[function]
[call site]
03710
cram_free_slice
[function]
[call site]
03711
cram_free_slice
[function]
[call site]
03712
cram_free_slice
[function]
[call site]
03713
cram_decode_slice_mt
[function]
[call site]
03714
cram_decode_slice
[function]
[call site]
03715
hts_tpool_process_sz
[function]
[call site]
03716
pthread_mutex_lock
[call site]
03717
pthread_mutex_unlock
[call site]
03718
__errno_location
[call site]
03719
__errno_location
[call site]
03720
hts_tpool_dispatch2
[function]
[call site]
03721
cram_decode_slice_thread
[function]
[call site]
03722
cram_decode_slice
[function]
[call site]
03723
__errno_location
[call site]
03724
__errno_location
[call site]
03725
hts_log
[function]
[call site]
03726
cram_free_slice
[function]
[call site]
03727
hts_tpool_process_len
[function]
[call site]
03728
pthread_mutex_lock
[call site]
03729
pthread_mutex_unlock
[call site]
03730
hts_tpool_process_qsize
[function]
[call site]
03731
hts_tpool_process_empty
[function]
[call site]
03732
hts_tpool_next_result_wait
[function]
[call site]
03733
hts_tpool_result_data
[function]
[call site]
03734
hts_log
[function]
[call site]
03735
hts_tpool_result_data
[function]
[call site]
03736
hts_log
[function]
[call site]
03737
hts_tpool_delete_result
[function]
[call site]
03738
hts_tpool_delete_result
[function]
[call site]
03739
cram_free_slice
[function]
[call site]
03740
cram_free_slice
[function]
[call site]
03741
cram_to_bam
[function]
[call site]
03742
strlen
[call site]
03743
append_uint64
[function]
[call site]
03744
append_uint32
[function]
[call site]
03745
append_uint32
[function]
[call site]
03746
append_sub32
[function]
[call site]
03747
append_uint32
[function]
[call site]
03748
append_sub32
[function]
[call site]
03749
append_uint64
[function]
[call site]
03750
bam_set1
[function]
[call site]
03751
bam_cigar2rqlens
[function]
[call site]
03752
hts_log
[function]
[call site]
03753
__errno_location
[call site]
03754
hts_log
[function]
[call site]
03755
__errno_location
[call site]
03756
hts_log
[function]
[call site]
03757
__errno_location
[call site]
03758
hts_log
[function]
[call site]
03759
__errno_location
[call site]
03760
subtract_check_underflow
[function]
[call site]
03761
subtract_check_underflow
[function]
[call site]
03762
subtract_check_underflow
[function]
[call site]
03763
subtract_check_underflow
[function]
[call site]
03764
subtract_check_underflow
[function]
[call site]
03765
hts_log
[function]
[call site]
03766
__errno_location
[call site]
03767
realloc_bam_data
[function]
[call site]
03768
hts_reg2bin
[function]
[call site]
03769
strncpy
[call site]
03770
cram_eof
[function]
[call site]
03771
bam_tag2cigar
[function]
[call site]
03772
sam_read1_sam
[function]
[call site]
03773
sam_parse1
[function]
[call site]
03774
strchr
[call site]
03775
hts_log
[function]
[call site]
03776
hts_log
[function]
[call site]
03777
possibly_expand_bam_data
[function]
[call site]
03778
parse_sam_flag
[function]
[call site]
03779
hts_str2uint
[function]
[call site]
03780
strtoul
[call site]
03781
strchr
[call site]
03782
strcmp
[call site]
03783
hts_log
[function]
[call site]
03784
bam_name2id
[function]
[call site]
03785
sam_hdr_name2tid
[function]
[call site]
03786
sam_hdr_fill_hrecs
[function]
[call site]
03787
kh_get_m_s2i
[function]
[call site]
03788
hts_log
[function]
[call site]
03789
hts_strprint
[function]
[call site]
03790
isprint_c
[function]
[call site]
03791
__ctype_b_loc
[call site]
03792
strcpy
[call site]
03793
snprintf
[call site]
03794
hts_log
[function]
[call site]
03795
hts_str2uint
[function]
[call site]
03796
hts_log
[function]
[call site]
03797
hts_str2uint
[function]
[call site]
03798
bam_parse_cigar
[function]
[call site]
03799
hts_log
[function]
[call site]
03800
read_ncigar
[function]
[call site]
03801
isdigit_c
[function]
[call site]
03802
hts_log
[function]
[call site]
03803
possibly_expand_bam_data
[function]
[call site]
03804
hts_log
[function]
[call site]
03805
parse_cigar
[function]
[call site]
03806
hts_str2uint
[function]
[call site]
03807
hts_log
[function]
[call site]
03808
hts_log
[function]
[call site]
03809
hts_log
[function]
[call site]
03810
bam_cigar2rlen
[function]
[call site]
03811
hts_log
[function]
[call site]
03812
strchr
[call site]
03813
hts_log
[function]
[call site]
03814
hts_reg2bin
[function]
[call site]
03815
strchr
[call site]
03816
strcmp
[call site]
03817
strcmp
[call site]
03818
bam_name2id
[function]
[call site]
03819
hts_log
[function]
[call site]
03820
hts_strprint
[function]
[call site]
03821
hts_log
[function]
[call site]
03822
hts_str2uint
[function]
[call site]
03823
hts_log
[function]
[call site]
03824
hts_str2int
[function]
[call site]
03825
hts_log
[function]
[call site]
03826
strchr
[call site]
03827
strcmp
[call site]
03828
hts_log
[function]
[call site]
03829
bam_cigar2qlen
[function]
[call site]
03830
hts_log
[function]
[call site]
03831
possibly_expand_bam_data
[function]
[call site]
03832
possibly_expand_bam_data
[function]
[call site]
03833
hts_log
[function]
[call site]
03834
hts_log
[function]
[call site]
03835
aux_parse
[function]
[call site]
03836
hts_log
[function]
[call site]
03837
isspace_c
[function]
[call site]
03838
hts_log
[function]
[call site]
03839
isspace_c
[function]
[call site]
03840
isspace_c
[function]
[call site]
03841
kh_get_tag
[function]
[call site]
03842
possibly_expand_bam_data
[function]
[call site]
03843
isspace_c
[function]
[call site]
03844
hts_log
[function]
[call site]
03845
possibly_expand_bam_data
[function]
[call site]
03846
hts_str2int
[function]
[call site]
03847
i16_to_le
[function]
[call site]
03848
u16_to_le
[function]
[call site]
03849
i32_to_le
[function]
[call site]
03850
u32_to_le
[function]
[call site]
03851
hts_str2uint
[function]
[call site]
03852
u16_to_le
[function]
[call site]
03853
u32_to_le
[function]
[call site]
03854
strtod
[call site]
03855
float_to_le
[function]
[call site]
03856
u32_to_le
[function]
[call site]
03857
strtod
[call site]
03858
double_to_le
[function]
[call site]
03859
u64_to_le
[function]
[call site]
03860
strchr
[call site]
03861
strlen
[call site]
03862
isspace_c
[function]
[call site]
03863
hts_log
[function]
[call site]
03864
possibly_expand_bam_data
[function]
[call site]
03865
isspace_c
[function]
[call site]
03866
hts_log
[function]
[call site]
03867
sam_parse_B_vals
[function]
[call site]
03868
sam_parse_B_vals_r
[function]
[call site]
03869
hts_log
[function]
[call site]
03870
aux_type2size
[function]
[call site]
03871
hts_log
[function]
[call site]
03872
possibly_expand_bam_data
[function]
[call site]
03873
hts_log
[function]
[call site]
03874
sam_parse_Bc_vals
[function]
[call site]
03875
grow_B_array
[function]
[call site]
03876
__errno_location
[call site]
03877
possibly_expand_bam_data
[function]
[call site]
03878
hts_log
[function]
[call site]
03879
hts_str2int
[function]
[call site]
03880
sam_parse_BC_vals
[function]
[call site]
03881
grow_B_array
[function]
[call site]
03882
hts_str2uint
[function]
[call site]
03883
sam_parse_Bs_vals
[function]
[call site]
03884
grow_B_array
[function]
[call site]
03885
hts_str2int
[function]
[call site]
03886
i16_to_le
[function]
[call site]
03887
sam_parse_BS_vals
[function]
[call site]
03888
grow_B_array
[function]
[call site]
03889
hts_str2uint
[function]
[call site]
03890
u16_to_le
[function]
[call site]
03891
sam_parse_Bi_vals
[function]
[call site]
03892
grow_B_array
[function]
[call site]
03893
hts_str2int
[function]
[call site]
03894
i32_to_le
[function]
[call site]
03895
sam_parse_BI_vals
[function]
[call site]
03896
grow_B_array
[function]
[call site]
03897
hts_str2uint
[function]
[call site]
03898
u32_to_le
[function]
[call site]
03899
sam_parse_Bf_vals
[function]
[call site]
03900
grow_B_array
[function]
[call site]
03901
strtod
[call site]
03902
float_to_le
[function]
[call site]
03903
hts_log
[function]
[call site]
03904
i32_to_le
[function]
[call site]
03905
hts_str2int
[function]
[call site]
03906
sam_parse_B_vals_r
[function]
[call site]
03907
sam_parse_B_vals_r
[function]
[call site]
03908
sam_parse_B_vals_r
[function]
[call site]
03909
sam_parse_B_vals_r
[function]
[call site]
03910
sam_parse_B_vals_r
[function]
[call site]
03911
sam_parse_B_vals_r
[function]
[call site]
03912
hts_log
[function]
[call site]
03913
isspace_c
[function]
[call site]
03914
hts_strprint
[function]
[call site]
03915
hts_log
[function]
[call site]
03916
isspace_c
[function]
[call site]
03917
hts_log
[function]
[call site]
03918
bam_tag2cigar
[function]
[call site]
03919
sam_state_destroy
[function]
[call site]
03920
__errno_location
[call site]
03921
bgzf_seek
[function]
[call site]
03922
bgzf_seek_common
[function]
[call site]
03923
sam_hdr_fill_hrecs
[function]
[call site]
03924
pthread_create
[call site]
03925
sam_dispatcher_read
[function]
[call site]
03926
ks_resize
[function]
[call site]
03927
pthread_mutex_lock
[call site]
03928
pthread_cond_signal
[call site]
03929
pthread_mutex_unlock
[call site]
03930
hts_tpool_process_shutdown
[function]
[call site]
03931
pthread_mutex_unlock
[call site]
03932
pthread_mutex_lock
[call site]
03933
pthread_mutex_unlock
[call site]
03934
calloc
[call site]
03935
realloc
[call site]
03936
bgzf_read
[function]
[call site]
03937
hread
[function]
[call site]
03938
__errno_location
[call site]
03939
sam_state_err
[function]
[call site]
03940
realloc
[call site]
03941
__assert_fail
[call site]
03942
__assert_fail
[call site]
03943
__assert_fail
[call site]
03944
ks_resize
[function]
[call site]
03945
hts_tpool_dispatch3
[function]
[call site]
03946
sam_parse_worker
[function]
[call site]
03947
pthread_mutex_lock
[call site]
03948
pthread_mutex_unlock
[call site]
03949
calloc
[call site]
03950
calloc
[call site]
03951
sam_state_err
[function]
[call site]
03952
sam_state_err
[function]
[call site]
03953
realloc
[call site]
03954
sam_state_err
[function]
[call site]
03955
strchr
[call site]
03956
sam_parse1
[function]
[call site]
03957
__errno_location
[call site]
03958
sam_state_err
[function]
[call site]
03959
cleanup_sp_lines
[function]
[call site]
03960
__assert_fail
[call site]
03961
sam_free_sp_bams
[function]
[call site]
03962
pthread_mutex_lock
[call site]
03963
pthread_mutex_unlock
[call site]
03964
sam_free_sp_bams
[function]
[call site]
03965
cleanup_sp_lines
[function]
[call site]
03966
cleanup_sp_bams
[function]
[call site]
03967
sam_free_sp_bams
[function]
[call site]
03968
pthread_mutex_lock
[call site]
03969
pthread_mutex_unlock
[call site]
03970
hts_tpool_dispatch
[function]
[call site]
03971
sam_parse_eof
[function]
[call site]
03972
pthread_mutex_lock
[call site]
03973
pthread_cond_wait
[call site]
03974
pthread_cond_signal
[call site]
03975
pthread_mutex_unlock
[call site]
03976
hts_tpool_process_shutdown
[function]
[call site]
03977
pthread_mutex_unlock
[call site]
03978
pthread_mutex_lock
[call site]
03979
pthread_cond_signal
[call site]
03980
pthread_mutex_unlock
[call site]
03981
pthread_mutex_lock
[call site]
03982
pthread_mutex_unlock
[call site]
03983
__errno_location
[call site]
03984
sam_state_err
[function]
[call site]
03985
hts_tpool_process_shutdown
[function]
[call site]
03986
hts_log
[function]
[call site]
03987
__errno_location
[call site]
03988
pthread_mutex_lock
[call site]
03989
pthread_mutex_unlock
[call site]
03990
hts_tpool_next_result_wait
[function]
[call site]
03991
hts_tpool_result_data
[function]
[call site]
03992
hts_tpool_delete_result
[function]
[call site]
03993
pthread_mutex_lock
[call site]
03994
pthread_mutex_unlock
[call site]
03995
bam_copy1
[function]
[call site]
03996
realloc_bam_data
[function]
[call site]
03997
pthread_mutex_lock
[call site]
03998
pthread_mutex_unlock
[call site]
03999
hts_getline
[function]
[call site]
04000
sam_parse1
[function]
[call site]
04001
hts_log
[function]
[call site]
04002
fastq_state_init
[function]
[call site]
04003
fastq_parse1
[function]
[call site]
04004
hts_getline
[function]
[call site]
04005
strpbrk
[call site]
04006
isspace_c
[function]
[call site]
04007
isspace_c
[function]
[call site]
04008
hts_getline
[function]
[call site]
04009
kputsn
[function]
[call site]
04010
hts_getline
[function]
[call site]
04011
kputsn
[function]
[call site]
04012
isdigit_c
[function]
[call site]
04013
regexec
[call site]
04014
hts_log
[function]
[call site]
04015
isalpha_c
[function]
[call site]
04016
bam_set1
[function]
[call site]
04017
bam_aux_append
[function]
[call site]
04018
__assert_fail
[call site]
04019
realloc_bam_data
[function]
[call site]
04020
__errno_location
[call site]
04021
isdigit_c
[function]
[call site]
04022
strtol
[call site]
04023
isdigit_c
[function]
[call site]
04024
isspace_c
[function]
[call site]
04025
bam_aux_append
[function]
[call site]
04026
aux_parse
[function]
[call site]
04027
__errno_location
[call site]
04028
__errno_location
[call site]
04029
sam_passes_filter
[function]
[call site]
04030
hts_filter_eval2
[function]
[call site]
04031
ks_free
[function]
[call site]
04032
hts_filter_eval_
[function]
[call site]
04033
expression
[function]
[call site]
04034
and_expr
[function]
[call site]
04035
eq_expr
[function]
[call site]
04036
cmp_expr
[function]
[call site]
04037
bitor_expr
[function]
[call site]
04038
bitxor_expr
[function]
[call site]
04039
bitand_expr
[function]
[call site]
04040
add_expr
[function]
[call site]
04041
mul_expr
[function]
[call site]
04042
unary_expr
[function]
[call site]
04043
ws
[function]
[call site]
04044
simple_expr
[function]
[call site]
04045
ws
[function]
[call site]
04046
expression
[function]
[call site]
04047
ws
[function]
[call site]
04048
fprintf
[call site]
04049
hts_str2dbl
[function]
[call site]
04050
ks_clear
[function]
[call site]
04054
kputsn
[function]
[call site]
04055
func_expr
[function]
[call site]
04056
strncmp
[call site]
04057
expression
[function]
[call site]
04058
expr_func_avg
[function]
[call site]
04059
strncmp
[call site]
04060
expression
[function]
[call site]
04061
ws
[function]
[call site]
04062
expression
[function]
[call site]
04063
hts_expr_val_existsT
[function]
[call site]
04064
hts_expr_val_exists
[function]
[call site]
04065
hts_expr_val_free
[function]
[call site]
04066
ks_free
[function]
[call site]
04067
strncmp
[call site]
04068
expression
[function]
[call site]
04069
hts_expr_val_existsT
[function]
[call site]
04070
strncmp
[call site]
04071
expression
[function]
[call site]
04072
exp
[call site]
04073
hts_expr_val_undef
[function]
[call site]
04074
ks_clear
[function]
[call site]
04075
strncmp
[call site]
04076
expression
[function]
[call site]
04077
expr_func_length
[function]
[call site]
04078
strncmp
[call site]
04079
expression
[function]
[call site]
04080
log
[call site]
04081
hts_expr_val_undef
[function]
[call site]
04082
strncmp
[call site]
04083
expression
[function]
[call site]
04084
expr_func_min
[function]
[call site]
04085
strncmp
[call site]
04086
expression
[function]
[call site]
04087
expr_func_max
[function]
[call site]
04088
strncmp
[call site]
04089
expression
[function]
[call site]
04090
ws
[function]
[call site]
04091
expression
[function]
[call site]
04092
hts_expr_val_exists
[function]
[call site]
04093
hts_expr_val_undef
[function]
[call site]
04094
hts_expr_val_free
[function]
[call site]
04095
pow
[call site]
04096
hts_expr_val_free
[function]
[call site]
04097
hts_expr_val_undef
[function]
[call site]
04098
strncmp
[call site]
04099
expression
[function]
[call site]
04100
sqrt
[call site]
04101
hts_expr_val_undef
[function]
[call site]
04102
ws
[function]
[call site]
04103
fprintf
[call site]
04104
hts_expr_val_exists
[function]
[call site]
04105
hts_expr_val_undef
[function]
[call site]
04106
unary_expr
[function]
[call site]
04107
hts_expr_val_exists
[function]
[call site]
04108
unary_expr
[function]
[call site]
04109
hts_expr_val_exists
[function]
[call site]
04110
hts_expr_val_undef
[function]
[call site]
04111
hts_expr_val_exists
[function]
[call site]
04112
hts_expr_val_undef
[function]
[call site]
04113
simple_expr
[function]
[call site]
04114
ws
[function]
[call site]
04115
unary_expr
[function]
[call site]
04116
hts_expr_val_exists
[function]
[call site]
04117
hts_expr_val_undef
[function]
[call site]
04118
hts_expr_val_free
[function]
[call site]
04119
hts_expr_val_undef
[function]
[call site]
04120
hts_expr_val_exists
[function]
[call site]
04121
hts_expr_val_free
[function]
[call site]
04122
ws
[function]
[call site]
04123
mul_expr
[function]
[call site]
04124
hts_expr_val_exists
[function]
[call site]
04125
hts_expr_val_free
[function]
[call site]
04126
hts_expr_val_undef
[function]
[call site]
04127
hts_expr_val_free
[function]
[call site]
04128
ws
[function]
[call site]
04129
add_expr
[function]
[call site]
04130
hts_expr_val_exists
[function]
[call site]
04131
hts_expr_val_free
[function]
[call site]
04132
hts_expr_val_free
[function]
[call site]
04133
hts_expr_val_undef
[function]
[call site]
04134
ws
[function]
[call site]
04135
bitand_expr
[function]
[call site]
04136
hts_expr_val_exists
[function]
[call site]
04137
hts_expr_val_free
[function]
[call site]
04138
hts_expr_val_free
[function]
[call site]
04139
hts_expr_val_undef
[function]
[call site]
04140
ws
[function]
[call site]
04141
bitxor_expr
[function]
[call site]
04142
hts_expr_val_exists
[function]
[call site]
04143
hts_expr_val_free
[function]
[call site]
04144
hts_expr_val_free
[function]
[call site]
04145
hts_expr_val_undef
[function]
[call site]
04146
ws
[function]
[call site]
04147
cmp_expr
[function]
[call site]
04148
hts_expr_val_exists
[function]
[call site]
04149
hts_expr_val_undef
[function]
[call site]
04150
strcmp
[call site]
04151
cmp_expr
[function]
[call site]
04152
hts_expr_val_exists
[function]
[call site]
04153
hts_expr_val_undef
[function]
[call site]
04154
strcmp
[call site]
04155
cmp_expr
[function]
[call site]
04156
hts_expr_val_exists
[function]
[call site]
04157
hts_expr_val_undef
[function]
[call site]
04158
strcmp
[call site]
04159
cmp_expr
[function]
[call site]
04160
hts_expr_val_exists
[function]
[call site]
04161
hts_expr_val_undef
[function]
[call site]
04162
strcmp
[call site]
04163
hts_expr_val_exists
[function]
[call site]
04164
hts_expr_val_undef
[function]
[call site]
04165
hts_expr_val_free
[function]
[call site]
04166
ws
[function]
[call site]
04167
eq_expr
[function]
[call site]
04168
hts_expr_val_exists
[function]
[call site]
04169
hts_expr_val_undef
[function]
[call site]
04170
strcmp
[call site]
04171
eq_expr
[function]
[call site]
04172
hts_expr_val_exists
[function]
[call site]
04173
hts_expr_val_undef
[function]
[call site]
04174
strcmp
[call site]
04175
eq_expr
[function]
[call site]
04176
hts_expr_val_free
[function]
[call site]
04177
regcomp
[call site]
04178
regerror
[call site]
04179
fprintf
[call site]
04180
hts_expr_val_free
[function]
[call site]
04181
regexec
[call site]
04182
regfree
[call site]
04183
hts_expr_val_exists
[function]
[call site]
04184
hts_expr_val_undef
[function]
[call site]
04185
hts_expr_val_free
[function]
[call site]
04186
ws
[function]
[call site]
04187
eq_expr
[function]
[call site]
04188
hts_expr_val_existsT
[function]
[call site]
04189
hts_expr_val_undef
[function]
[call site]
04190
eq_expr
[function]
[call site]
04191
hts_expr_val_existsT
[function]
[call site]
04192
hts_expr_val_undef
[function]
[call site]
04193
hts_expr_val_existsT
[function]
[call site]
04194
hts_expr_val_undef
[function]
[call site]
04195
hts_expr_val_existsT
[function]
[call site]
04196
hts_expr_val_undef
[function]
[call site]
04197
hts_expr_val_free
[function]
[call site]
04198
ws
[function]
[call site]
04199
fprintf
[call site]
04200
hts_expr_val_exists
[function]
[call site]
04201
bam_sym_lookup
[function]
[call site]
04202
memcmp
[call site]
04203
ks_clear
[function]
[call site]
04204
kputw
[function]
[call site]
04205
kputc_
[function]
[call site]
04206
kputs
[function]
[call site]
04207
kputs
[function]
[call site]
04208
memcmp
[call site]
04209
bam_endpos
[function]
[call site]
04210
memcmp
[call site]
04211
memcmp
[call site]
04212
memcmp
[call site]
04213
memcmp
[call site]
04214
memcmp
[call site]
04215
memcmp
[call site]
04216
memcmp
[call site]
04217
memcmp
[call site]
04218
memcmp
[call site]
04219
memcmp
[call site]
04220
memcmp
[call site]
04221
memcmp
[call site]
04222
memcmp
[call site]
04223
hts_log
[function]
[call site]
04224
memcmp
[call site]
04225
memcmp
[call site]
04226
bam_get_library
[function]
[call site]
04227
bam_aux_get
[function]
[call site]
04228
sam_hdr_find_tag_id
[function]
[call site]
04229
ks_clear
[function]
[call site]
04230
kputs
[function]
[call site]
04231
memcmp
[call site]
04232
memcmp
[call site]
04233
memcmp
[call site]
04234
sam_hdr_tid2name
[function]
[call site]
04235
ks_clear
[function]
[call site]
04236
kputs
[function]
[call site]
04237
memcmp
[call site]
04238
memcmp
[call site]
04239
memcmp
[call site]
04240
memcmp
[call site]
04241
memcmp
[call site]
04242
bam_cigar2qlen
[function]
[call site]
04243
memcmp
[call site]
04244
ks_clear
[function]
[call site]
04245
kputs
[function]
[call site]
04246
memcmp
[call site]
04247
ks_clear
[function]
[call site]
04248
ks_resize
[function]
[call site]
04249
memcmp
[call site]
04250
bam_cigar2rlen
[function]
[call site]
04251
memcmp
[call site]
04252
sam_hdr_tid2name
[function]
[call site]
04253
ks_clear
[function]
[call site]
04254
kputs
[function]
[call site]
04255
memcmp
[call site]
04256
sam_hdr_tid2name
[function]
[call site]
04257
ks_clear
[function]
[call site]
04258
kputs
[function]
[call site]
04259
memcmp
[call site]
04260
memcmp
[call site]
04261
ks_clear
[function]
[call site]
04262
ks_resize
[function]
[call site]
04263
nibble2base
[function]
[call site]
04264
memcmp
[call site]
04265
memcmp
[call site]
04266
bam_aux_get
[function]
[call site]
04267
ks_clear
[function]
[call site]
04268
kputs
[function]
[call site]
04269
ks_clear
[function]
[call site]
04270
kputsn
[function]
[call site]
04271
bam_aux2i
[function]
[call site]
04272
get_int_aux_val
[function]
[call site]
04273
le_to_i8
[function]
[call site]
04274
le_to_i16
[function]
[call site]
04275
le_to_u16
[function]
[call site]
04276
le_to_i32
[function]
[call site]
04277
le_to_u32
[function]
[call site]
04278
__errno_location
[call site]
04279
bam_aux2f
[function]
[call site]
04280
le_to_double
[function]
[call site]
04281
le_to_float
[function]
[call site]
04282
get_int_aux_val
[function]
[call site]
04283
hts_log
[function]
[call site]
04284
hts_log
[function]
[call site]
04285
hts_expr_val_free
[function]
[call site]
04286
hts_expr_val_free
[function]
[call site]
04287
sam_write1
[function]
[call site]
04288
bam_write_idx1
[function]
[call site]
04289
bam_write1
[function]
[call site]
04290
hts_log
[function]
[call site]
04291
__errno_location
[call site]
04292
hts_log
[function]
[call site]
04293
bgzf_flush_try
[function]
[call site]
04294
lazy_flush
[function]
[call site]
04295
ed_swap_4p
[function]
[call site]
04296
ed_swap_4p
[function]
[call site]
04297
bgzf_write_small
[function]
[call site]
04298
bgzf_write
[function]
[call site]
04299
swap_data
[function]
[call site]
04300
bgzf_write_small
[function]
[call site]
04301
bgzf_write_small
[function]
[call site]
04302
bgzf_write_small
[function]
[call site]
04303
bgzf_write_small
[function]
[call site]
04304
bam_cigar2rlen
[function]
[call site]
04305
hts_log
[function]
[call site]
04306
u32_to_le
[function]
[call site]
04307
u32_to_le
[function]
[call site]
04308
bgzf_write_small
[function]
[call site]
04309
bgzf_write_small
[function]
[call site]
04310
bgzf_write_small
[function]
[call site]
04311
u32_to_le
[function]
[call site]
04312
bgzf_write_small
[function]
[call site]
04313
bgzf_write_small
[function]
[call site]
04314
swap_data
[function]
[call site]
04315
bgzf_flush_try
[function]
[call site]
04316
hts_idx_amend_last
[function]
[call site]
04317
bam_write1
[function]
[call site]
04318
bam_endpos
[function]
[call site]
04319
bgzf_idx_push
[function]
[call site]
04320
hts_idx_push
[function]
[call site]
04321
hts_idx_check_range
[function]
[call site]
04322
hts_idx_maxpos
[function]
[call site]
04323
hts_bin_maxpos
[function]
[call site]
04324
hts_log
[function]
[call site]
04325
idx_format_name
[function]
[call site]
04326
hts_log
[function]
[call site]
04327
__errno_location
[call site]
04328
realloc
[call site]
04329
hts_log
[function]
[call site]
04330
hts_log
[function]
[call site]
04331
hts_log
[function]
[call site]
04332
kh_init_bin
[function]
[call site]
04333
calloc
[call site]
04334
insert_to_l
[function]
[call site]
04335
realloc
[call site]
04336
hts_reg2bin
[function]
[call site]
04337
insert_to_b
[function]
[call site]
04338
kh_put_bin
[function]
[call site]
04339
kh_resize_bin
[function]
[call site]
04340
realloc
[call site]
04341
calloc
[call site]
04342
kh_del_bin
[function]
[call site]
04343
realloc
[call site]
04344
insert_to_b
[function]
[call site]
04345
insert_to_b
[function]
[call site]
04346
hts_idx_check_range
[function]
[call site]
04347
pthread_mutex_lock
[call site]
04348
realloc
[call site]
04349
pthread_mutex_unlock
[call site]
04350
pthread_mutex_unlock
[call site]
04351
sam_hdr_tid2name
[function]
[call site]
04352
sam_hdr_tid2len
[function]
[call site]
04353
kh_get_s2i
[function]
[call site]
04354
hts_log
[function]
[call site]
04355
cram_put_bam_seq
[function]
[call site]
04356
cram_new_container
[function]
[call site]
04357
pthread_mutex_lock
[call site]
04358
pthread_mutex_unlock
[call site]
04359
hts_log
[function]
[call site]
04360
pthread_mutex_lock
[call site]
04361
hts_log
[function]
[call site]
04362
pthread_mutex_unlock
[call site]
04363
cram_next_container
[function]
[call site]
04364
cram_update_curr_slice
[function]
[call site]
04365
hts_log
[function]
[call site]
04366
cram_flush_container_mt
[function]
[call site]
04367
cram_free_slice
[function]
[call site]
04368
cram_free_container
[function]
[call site]
04369
cram_new_container
[function]
[call site]
04370
pthread_mutex_lock
[call site]
04371
pthread_mutex_unlock
[call site]
04372
cram_new_slice
[function]
[call site]
04373
calloc
[call site]
04374
calloc
[call site]
04375
cram_new_block
[function]
[call site]
04376
cram_new_block
[function]
[call site]
04377
cram_new_block
[function]
[call site]
04378
cram_new_block
[function]
[call site]
04379
cram_new_block
[function]
[call site]
04380
cram_new_block
[function]
[call site]
04381
string_pool_create
[function]
[call site]
04382
kh_init_m_s2i
[function]
[call site]
04383
kh_init_m_s2i
[function]
[call site]
04384
cram_free_slice
[function]
[call site]
04385
pthread_mutex_lock
[call site]
04386
hts_log
[function]
[call site]
04387
pthread_mutex_unlock
[call site]
04388
pthread_mutex_lock
[call site]
04389
calloc
[call site]
04390
pthread_mutex_unlock
[call site]
04391
pthread_mutex_lock
[call site]
04392
calloc
[call site]
04393
pthread_mutex_unlock
[call site]
04394
pthread_mutex_lock
[call site]
04395
pthread_mutex_unlock
[call site]
04396
pthread_mutex_lock
[call site]
04397
calloc
[call site]
04398
pthread_mutex_unlock
[call site]
04399
pthread_mutex_unlock
[call site]
04400
bam_copy1
[function]
[call site]
04401
bam_dup1
[function]
[call site]
04402
bam_init1
[function]
[call site]
04403
bam_copy1
[function]
[call site]
04404
bam_destroy1
[function]
[call site]
04405
bam_cigar2qlen
[function]
[call site]
04406
hts_log
[function]
[call site]
04407
pthread_create
[call site]
04408
sam_dispatcher_write
[function]
[call site]
04409
hts_tpool_next_result_wait
[function]
[call site]
04410
hts_tpool_result_data
[function]
[call site]
04411
sam_state_err
[function]
[call site]
04412
bgzf_flush_try
[function]
[call site]
04413
bgzf_write
[function]
[call site]
04414
hwrite
[function]
[call site]
04415
bam_endpos
[function]
[call site]
04416
bgzf_idx_push
[function]
[call site]
04417
__errno_location
[call site]
04418
sam_state_err
[function]
[call site]
04419
sam_hdr_tid2name
[function]
[call site]
04420
sam_hdr_tid2len
[function]
[call site]
04421
hts_log
[function]
[call site]
04422
bam_endpos
[function]
[call site]
04423
hts_idx_push
[function]
[call site]
04424
__errno_location
[call site]
04425
sam_state_err
[function]
[call site]
04426
sam_hdr_tid2name
[function]
[call site]
04427
sam_hdr_tid2len
[function]
[call site]
04428
hts_log
[function]
[call site]
04429
__assert_fail
[call site]
04430
pthread_mutex_lock
[call site]
04431
pthread_mutex_unlock
[call site]
04432
bgzf_write
[function]
[call site]
04433
bgzf_flush_try
[function]
[call site]
04434
bgzf_write
[function]
[call site]
04435
hwrite
[function]
[call site]
04436
hts_tpool_delete_result
[function]
[call site]
04437
pthread_mutex_lock
[call site]
04438
pthread_mutex_unlock
[call site]
04439
sam_state_err
[function]
[call site]
04440
hts_tpool_process_shutdown
[function]
[call site]
04441
__errno_location
[call site]
04442
sam_state_err
[function]
[call site]
04443
hts_log
[function]
[call site]
04444
pthread_mutex_lock
[call site]
04445
pthread_mutex_unlock
[call site]
04446
pthread_mutex_unlock
[call site]
04447
calloc
[call site]
04448
calloc
[call site]
04449
bam_copy1
[function]
[call site]
04450
pthread_mutex_lock
[call site]
04451
pthread_mutex_unlock
[call site]
04452
hts_tpool_dispatch3
[function]
[call site]
04453
sam_format_worker
[function]
[call site]
04454
cleanup_sp_bams
[function]
[call site]
04455
cleanup_sp_lines
[function]
[call site]
04456
pthread_mutex_unlock
[call site]
04457
pthread_mutex_unlock
[call site]
04458
sam_format1
[function]
[call site]
04459
sam_format1_append
[function]
[call site]
04460
kputc
[function]
[call site]
04461
bgzf_flush_try
[function]
[call site]
04462
bgzf_write
[function]
[call site]
04463
hwrite
[function]
[call site]
04464
bam_endpos
[function]
[call site]
04465
bgzf_idx_push
[function]
[call site]
04466
sam_hdr_tid2name
[function]
[call site]
04467
sam_hdr_tid2len
[function]
[call site]
04468
hts_log
[function]
[call site]
04469
bam_endpos
[function]
[call site]
04470
hts_idx_push
[function]
[call site]
04471
sam_hdr_tid2name
[function]
[call site]
04472
sam_hdr_tid2len
[function]
[call site]
04473
hts_log
[function]
[call site]
04474
fastq_state_init
[function]
[call site]
04475
fastq_format1
[function]
[call site]
04476
kputc
[function]
[call site]
04477
kputs
[function]
[call site]
04478
bam_aux_get
[function]
[call site]
04479
kputc
[function]
[call site]
04480
isalpha_c
[function]
[call site]
04481
toupper_c
[function]
[call site]
04482
kputc
[function]
[call site]
04483
kputs
[function]
[call site]
04484
kputs
[function]
[call site]
04485
kputs
[function]
[call site]
04486
bam_aux_get
[function]
[call site]
04487
ksprintf
[function]
[call site]
04488
isupper_c
[function]
[call site]
04489
__ctype_b_loc
[call site]
04490
islower_c
[function]
[call site]
04491
__ctype_b_loc
[call site]
04492
hts_log
[function]
[call site]
04493
strlen
[call site]
04494
strlen
[call site]
04495
isalpha_c
[function]
[call site]
04496
islower_c
[function]
[call site]
04497
toupper_c
[function]
[call site]
04498
kh_get_tag
[function]
[call site]
04499
kputc_
[function]
[call site]
04500
sam_format_aux1
[function]
[call site]
04501
skip_aux
[function]
[call site]
04502
kputsn
[function]
[call site]
04503
ks_resize
[function]
[call site]
04504
kputc_
[function]
[call site]
04505
kputc_
[function]
[call site]
04506
kputc_
[function]
[call site]
04507
kputsn
[function]
[call site]
04508
kputc_
[function]
[call site]
04509
kputc_
[function]
[call site]
04510
kputc_
[function]
[call site]
04511
kputc
[function]
[call site]
04512
bgzf_flush_try
[function]
[call site]
04513
bgzf_write
[function]
[call site]
04514
hwrite
[function]
[call site]
04515
__errno_location
[call site]
04516
bam_destroy1
[function]
[call site]
04517
sam_hdr_destroy
[function]
[call site]
04518
hts_close_or_abort
[function]
[call site]
04519
hts_close
[function]
[call site]
04520
hts_close
[function]
[call site]
04521
view_sam
[function]
[call site]
04522
view_sam
[function]
[call site]
04523
view_vcf
[function]
[call site]
04524
abort
[call site]
04525
hopen
[function]
[call site]
04526
hts_hopen
[function]
[call site]
04527
hclose
[function]
[call site]
04528
abort
[call site]
04529
hts_open
[function]
[call site]
04530
abort
[call site]
04531
bcf_hdr_read
[function]
[call site]
04532
vcf_hdr_read
[function]
[call site]
04533
bcf_hdr_init
[function]
[call site]
04534
calloc
[call site]
04535
kh_init_vdict
[function]
[call site]
04536
calloc
[call site]
04537
kh_resize_vdict
[function]
[call site]
04538
realloc
[call site]
04539
__ac_FNV1a_hash_string
[function]
[call site]
04540
calloc
[call site]
04541
kh_init_hdict
[function]
[call site]
04542
strchr
[call site]
04543
bcf_hdr_append
[function]
[call site]
04544
bcf_hdr_parse_line
[function]
[call site]
04545
calloc
[call site]
04546
isalpha_c
[function]
[call site]
04547
isalnum_c
[function]
[call site]
04548
bcf_hrec_add_key
[function]
[call site]
04549
is_escaped
[function]
[call site]
04553
hts_strprint
[function]
[call site]
04554
hts_log
[function]
[call site]
04555
bcf_hrec_set_val
[function]
[call site]
04556
__errno_location
[call site]
04557
__errno_location
[call site]
04558
hts_log
[function]
[call site]
04559
isspace_c
[function]
[call site]
04560
hts_strprint
[function]
[call site]
04561
hts_log
[function]
[call site]
04562
bcf_hrec_destroy
[function]
[call site]
04563
hts_strprint
[function]
[call site]
04564
hts_log
[function]
[call site]
04565
bcf_hrec_destroy
[function]
[call site]
04566
bcf_hdr_add_hrec
[function]
[call site]
04567
get_hdr_aux
[function]
[call site]
04568
bcf_hrec_check
[function]
[call site]
04569
bcf_hrec_set_type
[function]
[call site]
04570
strcmp
[call site]
04571
strcmp
[call site]
04572
strcmp
[call site]
04573
strcmp
[call site]
04574
bcf_hrec_find_key
[function]
[call site]
04575
strcasecmp
[call site]
04576
bcf_hrec_find_key
[function]
[call site]
04577
strcmp
[call site]
04578
bcf_hrec_find_key
[function]
[call site]
04579
hts_log
[function]
[call site]
04580
hts_log
[function]
[call site]
04581
hts_log
[function]
[call site]
04582
bcf_hdr_register_hrec
[function]
[call site]
04583
bcf_hrec_set_type
[function]
[call site]
04584
bcf_hrec_find_key
[function]
[call site]
04585
strtoll
[call site]
04586
bcf_hrec_find_key
[function]
[call site]
04587
strdup
[call site]
04588
kh_get_vdict
[function]
[call site]
04589
strcmp
[call site]
04590
kh_put_vdict
[function]
[call site]
04591
kh_resize_vdict
[function]
[call site]
04592
bcf_hrec_find_key
[function]
[call site]
04593
strtol
[call site]
04594
kh_del_vdict
[function]
[call site]
04595
hts_log
[function]
[call site]
04596
bcf_hdr_set_idx
[function]
[call site]
04597
hts_log
[function]
[call site]
04598
__errno_location
[call site]
04599
hts_resize_array_
[function]
[call site]
04600
hts_log
[function]
[call site]
04601
__errno_location
[call site]
04602
realloc
[call site]
04603
__errno_location
[call site]
04604
__errno_location
[call site]
04605
strerror
[call site]
04606
hts_log
[function]
[call site]
04607
__errno_location
[call site]
04608
abort
[call site]
04609
abort
[call site]
04610
kh_del_vdict
[function]
[call site]
04611
hrec_add_idx
[function]
[call site]
04612
realloc
[call site]
04613
realloc
[call site]
04614
strdup
[call site]
04615
kputw
[function]
[call site]
04616
strcmp
[call site]
04617
strcmp
[call site]
04618
strtol
[call site]
04619
hts_log
[function]
[call site]
04620
strcmp
[call site]
04621
strcmp
[call site]
04622
strcmp
[call site]
04623
strcmp
[call site]
04624
strcmp
[call site]
04625
strcmp
[call site]
04626
hts_log
[function]
[call site]
04627
strcmp
[call site]
04628
strcmp
[call site]
04629
strcmp
[call site]
04630
strcmp
[call site]
04631
strcmp
[call site]
04632
strcmp
[call site]
04633
strcmp
[call site]
04634
strcmp
[call site]
04635
strcmp
[call site]
04636
strcmp
[call site]
04637
__isoc99_sscanf
[call site]
04638
hts_log
[function]
[call site]
04639
hts_log
[function]
[call site]
04640
hts_log
[function]
[call site]
04641
strdup
[call site]
04642
kh_get_vdict
[function]
[call site]
04643
hrec_add_idx
[function]
[call site]
04644
kh_put_vdict
[function]
[call site]
04645
bcf_hdr_set_idx
[function]
[call site]
04646
kh_del_vdict
[function]
[call site]
04647
hrec_add_idx
[function]
[call site]
04648
bcf_hrec_destroy
[function]
[call site]
04649
ksprintf
[function]
[call site]
04650
kh_get_hdict
[function]
[call site]
04651
__ac_FNV1a_hash_string
[function]
[call site]
04652
bcf_hrec_destroy
[function]
[call site]
04653
strcmp
[call site]
04654
bcf_get_version
[function]
[call site]
04655
get_hdr_aux
[function]
[call site]
04656
bcf_hdr_get_version
[function]
[call site]
04657
bcf_hdr_get_hrec
[function]
[call site]
04658
ksprintf
[function]
[call site]
04659
get_hdr_aux
[function]
[call site]
04660
kh_get_hdict
[function]
[call site]
04661
strcmp
[call site]
04662
strcmp
[call site]
04663
ksprintf
[function]
[call site]
04664
get_hdr_aux
[function]
[call site]
04665
kh_get_hdict
[function]
[call site]
04666
strcmp
[call site]
04667
bcf_hrec_find_key
[function]
[call site]
04668
strcmp
[call site]
04669
kh_get_vdict
[function]
[call site]
04670
hts_log
[function]
[call site]
04671
strstr
[call site]
04672
strchr
[call site]
04673
strtol
[call site]
04674
__errno_location
[call site]
04675
__errno_location
[call site]
04676
strtol
[call site]
04677
__errno_location
[call site]
04678
__errno_location
[call site]
04679
bcf_hrec_find_key
[function]
[call site]
04680
ksprintf
[function]
[call site]
04681
kh_get_hdict
[function]
[call site]
04682
bcf_hrec_destroy
[function]
[call site]
04683
realloc
[call site]
04684
bcf_hdr_unregister_hrec
[function]
[call site]
04685
bcf_hrec_find_key
[function]
[call site]
04686
kh_get_vdict
[function]
[call site]
04687
kh_put_hdict
[function]
[call site]
04688
kh_resize_hdict
[function]
[call site]
04689
bcf_hdr_append
[function]
[call site]
04690
kh_destroy_vdict
[function]
[call site]
04691
hts_log
[function]
[call site]
04692
hts_getline
[function]
[call site]
04693
hts_log
[function]
[call site]
04694
hopen
[function]
[call site]
04695
hts_log
[function]
[call site]
04696
kgetline
[function]
[call site]
04697
hgets
[function]
[call site]
04698
strchr
[call site]
04699
kputs
[function]
[call site]
04700
kputsn
[function]
[call site]
04701
kputs
[function]
[call site]
04702
atol
[call site]
04703
kputl
[function]
[call site]
04704
kputll
[function]
[call site]
04705
kputsn
[function]
[call site]
04706
hclose
[function]
[call site]
04707
hts_log
[function]
[call site]
04708
kputsn
[function]
[call site]
04709
kputc
[function]
[call site]
04710
hts_log
[function]
[call site]
04711
bcf_hdr_parse
[function]
[call site]
04712
bcf_hdr_parse_line
[function]
[call site]
04713
strcasecmp
[call site]
04714
hts_log
[function]
[call site]
04715
bcf_hdr_add_hrec
[function]
[call site]
04716
bcf_hrec_destroy
[function]
[call site]
04717
bcf_hdr_parse_line
[function]
[call site]
04718
bcf_hdr_add_hrec
[function]
[call site]
04719
bcf_hrec_destroy
[function]
[call site]
04720
bcf_hdr_parse_line
[function]
[call site]
04721
bcf_hdr_add_hrec
[function]
[call site]
04722
bcf_hrec_destroy
[function]
[call site]
04723
__assert_fail
[call site]
04724
__errno_location
[call site]
04725
strerror
[call site]
04726
hts_log
[function]
[call site]
04727
strncmp
[call site]
04728
strchr
[call site]
04729
hts_strprint
[function]
[call site]
04730
hts_log
[function]
[call site]
04731
hts_log
[function]
[call site]
04732
bcf_hdr_parse_sample_line
[function]
[call site]
04733
strlen
[call site]
04734
strncmp
[call site]
04735
hts_log
[function]
[call site]
04736
strlen
[call site]
04737
strncmp
[call site]
04738
hts_log
[function]
[call site]
04739
bcf_hdr_add_sample_len
[function]
[call site]
04740
isspace_c
[function]
[call site]
04741
hts_log
[function]
[call site]
04742
kh_put_vdict
[function]
[call site]
04743
hts_log
[function]
[call site]
04744
bcf_hdr_sync
[function]
[call site]
04745
realloc
[call site]
04746
get_hdr_aux
[function]
[call site]
04747
bcf_hdr_check_sanity
[function]
[call site]
04748
bcf_get_version
[function]
[call site]
04749
bcf_hdr_id2int
[function]
[call site]
04750
kh_get_vdict
[function]
[call site]
04751
atoi
[call site]
04752
hts_log
[function]
[call site]
04753
hts_log
[function]
[call site]
04754
bcf_hdr_id2int
[function]
[call site]
04755
atoi
[call site]
04756
hts_log
[function]
[call site]
04757
hts_log
[function]
[call site]
04758
tbx_index_load3
[function]
[call site]
04759
index_load
[function]
[call site]
04760
calloc
[call site]
04761
hts_idx_load3
[function]
[call site]
04762
idx_find_and_load
[function]
[call site]
04763
strstr
[call site]
04764
strdup
[call site]
04765
__errno_location
[call site]
04766
strerror
[call site]
04767
hts_log
[function]
[call site]
04768
hts_idx_load3
[function]
[call site]
04769
hisremote
[function]
[call site]
04770
stat
[call site]
04771
hts_log
[function]
[call site]
04772
idx_test_and_fetch
[function]
[call site]
04773
hisremote
[function]
[call site]
04774
strncmp
[call site]
04775
strcspn
[call site]
04776
kputsn
[function]
[call site]
04777
access
[call site]
04778
hopen
[function]
[call site]
04779
hts_log
[function]
[call site]
04780
hts_detect_format2
[function]
[call site]
04781
hts_log
[function]
[call site]
04782
hts_log
[function]
[call site]
04783
hts_open_tmpfile
[function]
[call site]
04784
hts_log
[function]
[call site]
04785
hts_log
[function]
[call site]
04786
calloc
[call site]
04787
__errno_location
[call site]
04788
strerror
[call site]
04789
hts_log
[function]
[call site]
04790
hread
[function]
[call site]
04791
hwrite
[function]
[call site]
04792
__errno_location
[call site]
04793
strerror
[call site]
04794
hts_log
[function]
[call site]
04795
hts_log
[function]
[call site]
04796
hclose
[function]
[call site]
04797
__errno_location
[call site]
04798
strerror
[call site]
04799
hts_log
[function]
[call site]
04800
rename
[call site]
04801
__errno_location
[call site]
04802
strerror
[call site]
04803
hts_log
[function]
[call site]
04804
ks_clear
[function]
[call site]
04805
hclose
[function]
[call site]
04806
hts_log
[function]
[call site]
04807
hopen
[function]
[call site]
04808
hclose_abruptly
[function]
[call site]
04809
strlen
[call site]
04810
__errno_location
[call site]
04811
hclose_abruptly
[function]
[call site]
04812
hclose_abruptly
[function]
[call site]
04813
unlink
[call site]
04814
__errno_location
[call site]
04815
strdup
[call site]
04816
idx_read
[function]
[call site]
04817
bgzf_open
[function]
[call site]
04818
ed_is_big
[function]
[call site]
04819
bgzf_read
[function]
[call site]
04820
memcmp
[call site]
04821
bgzf_read
[function]
[call site]
04822
ed_swap_4p
[function]
[call site]
04823
bgzf_read
[function]
[call site]
04824
bgzf_read
[function]
[call site]
04825
ed_swap_4p
[function]
[call site]
04826
hts_idx_init
[function]
[call site]
04827
idx_read_core
[function]
[call site]
04831
ed_is_big
[function]
[call site]
04832
kh_init_bin
[function]
[call site]
04833
bgzf_read
[function]
[call site]
04834
ed_swap_4p
[function]
[call site]
04835
bgzf_read
[function]
[call site]
04836
ed_swap_4p
[function]
[call site]
04837
kh_put_bin
[function]
[call site]
04838
bgzf_read
[function]
[call site]
04839
ed_swap_8p
[function]
[call site]
04840
bgzf_read
[function]
[call site]
04841
ed_swap_4p
[function]
[call site]
04842
bgzf_read
[function]
[call site]
04843
swap_bins
[function]
[call site]
04844
ed_swap_8p
[function]
[call site]
04845
ed_swap_8p
[function]
[call site]
04846
bgzf_read
[function]
[call site]
04847
ed_swap_4p
[function]
[call site]
04848
bgzf_read
[function]
[call site]
04849
ed_swap_8p
[function]
[call site]
04850
update_loff
[function]
[call site]
04851
hts_bin_bot
[function]
[call site]
04852
hts_bin_level
[function]
[call site]
04853
bgzf_read
[function]
[call site]
04854
ed_swap_8p
[function]
[call site]
04855
memcmp
[call site]
04856
bgzf_read
[function]
[call site]
04857
le_to_u32
[function]
[call site]
04858
hts_idx_init
[function]
[call site]
04859
le_to_u32
[function]
[call site]
04860
bgzf_read
[function]
[call site]
04861
idx_read_core
[function]
[call site]
04862
memcmp
[call site]
04863
bgzf_read
[function]
[call site]
04864
ed_swap_4p
[function]
[call site]
04865
hts_idx_init
[function]
[call site]
04866
idx_read_core
[function]
[call site]
04867
__errno_location
[call site]
04868
bgzf_close
[function]
[call site]
04869
bgzf_close
[function]
[call site]
04870
hts_idx_destroy
[function]
[call site]
04871
__errno_location
[call site]
04872
strerror
[call site]
04873
hts_log
[function]
[call site]
04874
hts_idx_check_local
[function]
[call site]
04875
hisremote
[function]
[call site]
04876
strlen
[call site]
04877
strncmp
[call site]
04878
strncmp
[call site]
04879
hts_log
[function]
[call site]
04880
strlen
[call site]
04881
calloc
[call site]
04882
strcpy
[call site]
04883
stat
[call site]
04884
strcpy
[call site]
04885
stat
[call site]
04886
strcpy
[call site]
04887
stat
[call site]
04888
strcpy
[call site]
04889
stat
[call site]
04890
strcpy
[call site]
04891
stat
[call site]
04892
strcpy
[call site]
04893
stat
[call site]
04894
strcpy
[call site]
04895
stat
[call site]
04896
strcpy
[call site]
04897
stat
[call site]
04898
strcpy
[call site]
04899
strcmp
[call site]
04900
strcmp
[call site]
04901
strcpy
[call site]
04902
stat
[call site]
04903
strcpy
[call site]
04904
stat
[call site]
04905
hisremote
[function]
[call site]
04906
idx_filename
[function]
[call site]
04907
haddextension
[function]
[call site]
04908
find_scheme_handler
[function]
[call site]
04909
strncmp
[call site]
04910
strcspn
[call site]
04911
strchr
[call site]
04912
strip_extension
[function]
[call site]
04913
kputsn
[function]
[call site]
04914
kputs
[function]
[call site]
04915
kputs
[function]
[call site]
04916
idx_test_and_fetch
[function]
[call site]
04917
haddextension
[function]
[call site]
04918
idx_test_and_fetch
[function]
[call site]
04919
idx_filename
[function]
[call site]
04920
idx_filename
[function]
[call site]
04921
idx_filename
[function]
[call site]
04922
idx_filename
[function]
[call site]
04923
idx_filename
[function]
[call site]
04924
hts_log
[function]
[call site]
04925
hts_idx_load3
[function]
[call site]
04926
idx_read
[function]
[call site]
04927
hts_idx_get_meta
[function]
[call site]
04928
le_to_i32
[function]
[call site]
04929
le_to_i32
[function]
[call site]
04930
le_to_i32
[function]
[call site]
04931
le_to_i32
[function]
[call site]
04932
le_to_i32
[function]
[call site]
04933
le_to_i32
[function]
[call site]
04934
le_to_u32
[function]
[call site]
04935
get_tid
[function]
[call site]
04936
kh_init_s2i
[function]
[call site]
04937
kh_put_s2i
[function]
[call site]
04938
strdup
[call site]
04939
kh_del_s2i
[function]
[call site]
04940
kh_get_s2i
[function]
[call site]
04941
__errno_location
[call site]
04942
strerror
[call site]
04943
hts_log
[function]
[call site]
04944
strlen
[call site]
04945
hts_log
[function]
[call site]
04946
tbx_destroy
[function]
[call site]
04947
hts_idx_destroy
[function]
[call site]
04948
kh_destroy_s2i
[function]
[call site]
04949
tbx_seqnames
[function]
[call site]
04950
calloc
[call site]
04951
calloc
[call site]
04952
__assert_fail
[call site]
04953
__assert_fail
[call site]
04954
bcf_hdr_get_hrec
[function]
[call site]
04955
add_missing_contig_hrec
[function]
[call site]
04956
calloc
[call site]
04957
strdup
[call site]
04958
bcf_hrec_add_key
[function]
[call site]
04959
strlen
[call site]
04960
bcf_hrec_set_val
[function]
[call site]
04961
bcf_hdr_add_hrec
[function]
[call site]
04962
__errno_location
[call site]
04963
__errno_location
[call site]
04964
strerror
[call site]
04965
hts_log
[function]
[call site]
04966
bcf_hrec_destroy
[function]
[call site]
04967
__errno_location
[call site]
04968
bcf_hdr_sync
[function]
[call site]
04969
tbx_destroy
[function]
[call site]
04970
tbx_destroy
[function]
[call site]
04971
bcf_hdr_destroy
[function]
[call site]
04972
get_hdr_aux
[function]
[call site]
04973
kh_destroy_hdict
[function]
[call site]
04974
kh_destroy_vdict
[function]
[call site]
04975
bcf_hrec_destroy
[function]
[call site]
04976
hts_log
[function]
[call site]
04977
__assert_fail
[call site]
04978
bcf_hdr_init
[function]
[call site]
04979
hts_log
[function]
[call site]
04980
bgzf_read
[function]
[call site]
04981
hts_log
[function]
[call site]
04982
bcf_hdr_destroy
[function]
[call site]
04983
strncmp
[call site]
04984
strncmp
[call site]
04985
hts_log
[function]
[call site]
04986
hts_log
[function]
[call site]
04987
bcf_hdr_destroy
[function]
[call site]
04988
bgzf_read
[function]
[call site]
04989
__errno_location
[call site]
04990
__errno_location
[call site]
04991
bgzf_read
[function]
[call site]
04992
bcf_hdr_parse
[function]
[call site]
04993
bcf_hdr_incr_ref
[function]
[call site]
04994
get_hdr_aux
[function]
[call site]
04995
bgzf_set_private_data
[function]
[call site]
04996
__assert_fail
[call site]
04997
hdr_bgzf_private_data_cleanup
[function]
[call site]
04998
bcf_hdr_decr_ref
[function]
[call site]
04999
get_hdr_aux
[function]
[call site]
05000
bcf_hdr_destroy
[function]
[call site]
05001
hts_log
[function]
[call site]
05002
bcf_hdr_destroy
[function]
[call site]
05003
hts_close_or_abort
[function]
[call site]
05004
hts_close
[function]
[call site]
05005
bcf_hdr_write
[function]
[call site]
05006
__errno_location
[call site]
05007
bcf_hdr_sync
[function]
[call site]
05008
vcf_hdr_write
[function]
[call site]
05009
bcf_hdr_format
[function]
[call site]
05010
_bcf_hrec_format
[function]
[call site]
05011
ksprintf
[function]
[call site]
05012
strcmp
[call site]
05013
kputc
[function]
[call site]
05014
ksprintf
[function]
[call site]
05015
ksprintf
[function]
[call site]
05016
ksprintf
[function]
[call site]
05017
ksprintf
[function]
[call site]
05018
ksprintf
[function]
[call site]
05019
ksprintf
[function]
[call site]
05020
ksprintf
[function]
[call site]
05021
bgzf_write
[function]
[call site]
05022
bgzf_flush
[function]
[call site]
05023
hwrite
[function]
[call site]
05024
bcf_hdr_format
[function]
[call site]
05025
kputc
[function]
[call site]
05026
bgzf_write
[function]
[call site]
05027
u32_to_le
[function]
[call site]
05028
bgzf_write
[function]
[call site]
05029
bgzf_write
[function]
[call site]
05030
bgzf_flush
[function]
[call site]
05031
bcf_hdr_incr_ref
[function]
[call site]
05032
bgzf_set_private_data
[function]
[call site]
05033
hdr_bgzf_private_data_cleanup
[function]
[call site]
05034
bcf_init
[function]
[call site]
05035
calloc
[call site]
05036
bcf_read
[function]
[call site]
05037
vcf_read
[function]
[call site]
05038
hts_getline
[function]
[call site]
05039
vcf_parse
[function]
[call site]
05040
ks_resize
[function]
[call site]
05041
bcf_clear
[function]
[call site]
05042
bcf_float_set
[function]
[call site]
05043
kstrtok
[function]
[call site]
05044
kh_get_vdict
[function]
[call site]
05045
hts_log
[function]
[call site]
05046
fix_chromosome
[function]
[call site]
05047
ksprintf
[function]
[call site]
05048
bcf_hdr_parse_line
[function]
[call site]
05049
bcf_hdr_add_hrec
[function]
[call site]
05050
bcf_hrec_destroy
[function]
[call site]
05051
bcf_hdr_sync
[function]
[call site]
05052
kh_get_vdict
[function]
[call site]
05053
hts_log
[function]
[call site]
05054
kstrtok
[function]
[call site]
05055
hts_str2uint
[function]
[call site]
05056
hts_log
[function]
[call site]
05057
hts_log
[function]
[call site]
05058
kstrtok
[function]
[call site]
05059
memcmp
[call site]
05060
bcf_enc_vchar
[function]
[call site]
05061
bcf_enc_size
[function]
[call site]
05062
ks_resize
[function]
[call site]
05063
ks_resize
[function]
[call site]
05064
i16_to_le
[function]
[call site]
05065
i32_to_le
[function]
[call site]
05066
kputsn
[function]
[call site]
05067
bcf_enc_size
[function]
[call site]
05068
kstrtok
[function]
[call site]
05069
bcf_enc_vchar
[function]
[call site]
05070
kstrtok
[function]
[call site]
05071
memcmp
[call site]
05072
bcf_seqname_safe
[function]
[call site]
05073
bcf_seqname
[function]
[call site]
05074
bcf_hdr_id2name
[function]
[call site]
05075
hts_log
[function]
[call site]
05076
bcf_enc_vchar
[function]
[call site]
05077
kstrtok
[function]
[call site]
05078
memcmp
[call site]
05079
atof
[call site]
05080
bcf_float_set
[function]
[call site]
05081
kstrtok
[function]
[call site]
05082
memcmp
[call site]
05083
vcf_parse_filter
[function]
[call site]
05084
bcf_seqname_safe
[function]
[call site]
05085
hts_log
[function]
[call site]
05086
kstrtok
[function]
[call site]
05087
kh_get_vdict
[function]
[call site]
05088
hts_log
[function]
[call site]
05089
ksprintf
[function]
[call site]
05090
bcf_hdr_parse_line
[function]
[call site]
05091
bcf_hdr_add_hrec
[function]
[call site]
05092
bcf_hrec_destroy
[function]
[call site]
05093
bcf_hdr_sync
[function]
[call site]
05094
kh_get_vdict
[function]
[call site]
05095
bcf_seqname_safe
[function]
[call site]
05096
hts_log
[function]
[call site]
05097
bcf_enc_vint
[function]
[call site]
05098
bcf_enc_size
[function]
[call site]
05099
bcf_enc_int1
[function]
[call site]
05100
ks_resize
[function]
[call site]
05101
i16_to_le
[function]
[call site]
05102
i32_to_le
[function]
[call site]
05103
bcf_enc_size
[function]
[call site]
05104
ks_resize
[function]
[call site]
05105
bcf_enc_size
[function]
[call site]
05106
ks_resize
[function]
[call site]
05107
i16_to_le
[function]
[call site]
05108
bcf_enc_size
[function]
[call site]
05109
ks_resize
[function]
[call site]
05110
i32_to_le
[function]
[call site]
05111
bcf_enc_vint
[function]
[call site]
05112
kstrtok
[function]
[call site]
05113
memcmp
[call site]
05114
vcf_parse_info
[function]
[call site]
05115
bcf_seqname_safe
[function]
[call site]
05116
hts_log
[function]
[call site]
05117
kh_get_vdict
[function]
[call site]
05118
hts_log
[function]
[call site]
05119
ksprintf
[function]
[call site]
05120
bcf_hdr_parse_line
[function]
[call site]
05121
bcf_hdr_add_hrec
[function]
[call site]
05122
bcf_hrec_destroy
[function]
[call site]
05123
bcf_hdr_sync
[function]
[call site]
05124
kh_get_vdict
[function]
[call site]
05125
bcf_seqname_safe
[function]
[call site]
05126
hts_log
[function]
[call site]
05127
bcf_enc_int1
[function]
[call site]
05128
bcf_enc_size
[function]
[call site]
05129
bcf_enc_vchar
[function]
[call site]
05130
realloc
[call site]
05131
bcf_seqname_safe
[function]
[call site]
05132
hts_log
[function]
[call site]
05133
hts_str2int
[function]
[call site]
05134
bcf_seqname_safe
[function]
[call site]
05135
hts_log
[function]
[call site]
05136
bcf_enc_int1
[function]
[call site]
05137
bcf_enc_vint
[function]
[call site]
05138
memcmp
[call site]
05139
bcf_seqname_safe
[function]
[call site]
05140
hts_log
[function]
[call site]
05141
hts_str2dbl
[function]
[call site]
05142
bcf_float_set
[function]
[call site]
05143
bcf_enc_vfloat
[function]
[call site]
05144
__assert_fail
[call site]
05145
bcf_enc_size
[function]
[call site]
05146
serialize_float_array
[function]
[call site]
05147
ks_resize
[function]
[call site]
05148
float_to_le
[function]
[call site]
05149
kstrtok
[function]
[call site]
05150
vcf_parse_format
[function]
[call site]
05151
vcf_parse_format_empty1
[function]
[call site]
05152
bcf_seqname_safe
[function]
[call site]
05153
hts_log
[function]
[call site]
05154
vcf_parse_format_dict2
[function]
[call site]
05155
kstrtok
[function]
[call site]
05156
bcf_seqname_safe
[function]
[call site]
05157
hts_log
[function]
[call site]
05158
kh_get_vdict
[function]
[call site]
05159
bcf_seqname_safe
[function]
[call site]
05160
hts_log
[function]
[call site]
05161
bcf_seqname_safe
[function]
[call site]
05162
hts_log
[function]
[call site]
05163
ksprintf
[function]
[call site]
05164
bcf_hdr_parse_line
[function]
[call site]
05165
bcf_hdr_add_hrec
[function]
[call site]
05166
bcf_hrec_destroy
[function]
[call site]
05167
bcf_hdr_sync
[function]
[call site]
05168
kh_get_vdict
[function]
[call site]
05169
bcf_seqname_safe
[function]
[call site]
05170
hts_log
[function]
[call site]
05171
vcf_parse_format_max3
[function]
[call site]
05172
hts_log
[function]
[call site]
05173
vcf_parse_format_alloc4
[function]
[call site]
05174
bcf_seqname_safe
[function]
[call site]
05175
hts_log
[function]
[call site]
05176
align_mem
[function]
[call site]
05177
kputsn
[function]
[call site]
05178
bcf_seqname_safe
[function]
[call site]
05179
hts_log
[function]
[call site]
05180
bcf_seqname_safe
[function]
[call site]
05181
hts_log
[function]
[call site]
05182
ks_resize
[function]
[call site]
05183
bcf_seqname_safe
[function]
[call site]
05184
hts_log
[function]
[call site]
05185
bcf_seqname_safe
[function]
[call site]
05186
hts_log
[function]
[call site]
05187
vcf_parse_format_fill5
[function]
[call site]
05188
bcf_get_version
[function]
[call site]
05189
bcf_seqname_safe
[function]
[call site]
05190
hts_log
[function]
[call site]
05191
hts_str2uint
[function]
[call site]
05192
bcf_seqname_safe
[function]
[call site]
05193
hts_log
[function]
[call site]
05194
bcf_seqname_safe
[function]
[call site]
05195
hts_log
[function]
[call site]
05196
hts_str2int
[function]
[call site]
05197
bcf_seqname_safe
[function]
[call site]
05198
hts_log
[function]
[call site]
05199
isdigit_c
[function]
[call site]
05200
bcf_float_set
[function]
[call site]
05201
hts_str2dbl
[function]
[call site]
05202
bcf_seqname
[function]
[call site]
05203
hts_log
[function]
[call site]
05204
bcf_float_set
[function]
[call site]
05205
bcf_float_set
[function]
[call site]
05206
bcf_seqname_safe
[function]
[call site]
05207
hts_log
[function]
[call site]
05208
hts_strprint
[function]
[call site]
05209
bcf_seqname_safe
[function]
[call site]
05210
hts_log
[function]
[call site]
05211
bcf_float_set
[function]
[call site]
05212
bcf_float_set
[function]
[call site]
05213
vcf_parse_format_gt6
[function]
[call site]
05214
bcf_enc_int1
[function]
[call site]
05215
bcf_enc_size
[function]
[call site]
05216
kputsn
[function]
[call site]
05217
bcf_enc_vint
[function]
[call site]
05218
bcf_enc_size
[function]
[call site]
05219
serialize_float_array
[function]
[call site]
05220
bcf_seqname_safe
[function]
[call site]
05221
hts_log
[function]
[call site]
05222
vcf_parse_format_check7
[function]
[call site]
05223
bcf_seqname_safe
[function]
[call site]
05224
hts_log
[function]
[call site]
05225
bcf_seqname_safe
[function]
[call site]
05226
hts_log
[function]
[call site]
05227
get_rlen
[function]
[call site]
05228
bcf_hdr_id2int
[function]
[call site]
05229
svlen_on_ref_for_vcf_alt
[function]
[call site]
05230
strlen
[call site]
05231
memcmp
[call site]
05232
memcmp
[call site]
05233
memcmp
[call site]
05234
memcmp
[call site]
05235
strcmp
[call site]
05236
strcmp
[call site]
05237
strlen
[call site]
05238
bcf_dec_size
[function]
[call site]
05239
bcf_dec_typed_int1
[function]
[call site]
05240
bcf_dec_int1
[function]
[call site]
05241
le_to_i8
[function]
[call site]
05242
le_to_i16
[function]
[call site]
05243
le_to_i32
[function]
[call site]
05244
le_to_i64
[function]
[call site]
05245
le_to_u64
[function]
[call site]
05246
bcf_dec_size
[function]
[call site]
05247
svlen_on_ref_for_vcf_alt
[function]
[call site]
05248
strncmp
[call site]
05249
strncmp
[call site]
05250
bcf_dec_size
[function]
[call site]
05251
bcf_hdr_id2int
[function]
[call site]
05252
bcf_get_info
[function]
[call site]
05253
bcf_hdr_id2int
[function]
[call site]
05254
bcf_get_info_id
[function]
[call site]
05255
bcf_unpack
[function]
[call site]
05256
bcf_fmt_sized_array
[function]
[call site]
05257
bcf_dec_size
[function]
[call site]
05258
bcf_fmt_array
[function]
[call site]
05259
kputc_
[function]
[call site]
05260
memchr
[call site]
05261
kputsn
[function]
[call site]
05262
kputc
[function]
[call site]
05263
le_to_i8
[function]
[call site]
05264
kputc_
[function]
[call site]
05265
kputc
[function]
[call site]
05266
kputw
[function]
[call site]
05267
le_to_i16
[function]
[call site]
05268
kputc_
[function]
[call site]
05269
kputc
[function]
[call site]
05270
kputw
[function]
[call site]
05271
le_to_i32
[function]
[call site]
05272
kputc_
[function]
[call site]
05273
kputc
[function]
[call site]
05274
kputw
[function]
[call site]
05275
le_to_u32
[function]
[call site]
05276
kputc_
[function]
[call site]
05277
kputc
[function]
[call site]
05278
le_to_float
[function]
[call site]
05279
kputd
[function]
[call site]
05280
hts_log
[function]
[call site]
05281
exit
[call site]
05282
kputc_
[function]
[call site]
05283
hts_realloc_or_die
[function]
[call site]
05284
bcf_fmt_sized_array
[function]
[call site]
05285
kputc_
[function]
[call site]
05286
bcf_dec_size
[function]
[call site]
05287
hts_realloc_or_die
[function]
[call site]
05288
bcf_dec_int1
[function]
[call site]
05289
hts_realloc_or_die
[function]
[call site]
05290
bcf_unpack_info_core1
[function]
[call site]
05291
bcf_dec_typed_int1
[function]
[call site]
05292
bcf_dec_size
[function]
[call site]
05293
le_to_i16
[function]
[call site]
05294
le_to_i32
[function]
[call site]
05295
le_to_float
[function]
[call site]
05296
le_to_i64
[function]
[call site]
05297
hts_realloc_or_die
[function]
[call site]
05298
bcf_unpack_fmt_core1
[function]
[call site]
05299
bcf_dec_typed_int1
[function]
[call site]
05300
bcf_dec_size
[function]
[call site]
05301
bcf_get_info
[function]
[call site]
05302
bcf_dec_typed_int1
[function]
[call site]
05303
bcf_unpack_info_core1
[function]
[call site]
05304
bcf_unpack_info_core1
[function]
[call site]
05305
bcf_dec_size
[function]
[call site]
05306
bcf_hdr_id2int
[function]
[call site]
05307
bcf_get_fmt
[function]
[call site]
05308
bcf_hdr_id2int
[function]
[call site]
05309
bcf_get_fmt_id
[function]
[call site]
05310
bcf_unpack
[function]
[call site]
05311
bcf_dec_typed_int1
[function]
[call site]
05312
bcf_unpack_fmt_core1
[function]
[call site]
05313
bcf_dec_size
[function]
[call site]
05314
le_to_i8
[function]
[call site]
05315
le_to_i16
[function]
[call site]
05316
le_to_i32
[function]
[call site]
05317
le_to_i64
[function]
[call site]
05318
le_to_i8
[function]
[call site]
05319
le_to_i16
[function]
[call site]
05320
le_to_i32
[function]
[call site]
05321
le_to_i64
[function]
[call site]
05322
bgzf_get_private_data
[function]
[call site]
05323
__assert_fail
[call site]
05324
bcf_read1_core
[function]
[call site]
05325
bgzf_read
[function]
[call site]
05326
bcf_clear
[function]
[call site]
05327
le_to_u32
[function]
[call site]
05328
le_to_u32
[function]
[call site]
05329
ks_resize
[function]
[call site]
05330
ks_resize
[function]
[call site]
05331
le_to_i32
[function]
[call site]
05332
le_to_u32
[function]
[call site]
05333
le_to_i32
[function]
[call site]
05334
le_to_float
[function]
[call site]
05335
le_to_u16
[function]
[call site]
05336
le_to_u16
[function]
[call site]
05337
le_to_u32
[function]
[call site]
05338
bgzf_read
[function]
[call site]
05339
bgzf_read
[function]
[call site]
05340
bcf_record_check
[function]
[call site]
05341
bcf_get_version
[function]
[call site]
05342
bcf_hdr_id2int
[function]
[call site]
05343
hts_log
[function]
[call site]
05344
bcf_dec_size_safe
[function]
[call site]
05345
bcf_dec_typed_int1_safe
[function]
[call site]
05346
le_to_i16
[function]
[call site]
05347
le_to_i32
[function]
[call site]
05348
bcf_seqname_safe
[function]
[call site]
05349
get_type_name
[function]
[call site]
05350
hts_log
[function]
[call site]
05351
bcf_seqname_safe
[function]
[call site]
05352
hts_log
[function]
[call site]
05353
bcf_dec_size_safe
[function]
[call site]
05354
bcf_seqname_safe
[function]
[call site]
05355
get_type_name
[function]
[call site]
05356
hts_log
[function]
[call site]
05357
bcf_dec_size_safe
[function]
[call site]
05358
bcf_seqname_safe
[function]
[call site]
05359
get_type_name
[function]
[call site]
05360
hts_log
[function]
[call site]
05361
bcf_dec_int1
[function]
[call site]
05362
bcf_seqname_safe
[function]
[call site]
05363
hts_log
[function]
[call site]
05364
bcf_dec_typed_int1_safe
[function]
[call site]
05365
bcf_seqname_safe
[function]
[call site]
05366
bcf_dec_size_safe
[function]
[call site]
05367
bcf_seqname_safe
[function]
[call site]
05368
get_type_name
[function]
[call site]
05369
hts_log
[function]
[call site]
05370
bcf_dec_typed_int1_safe
[function]
[call site]
05371
bcf_record_check_err
[function]
[call site]
05372
bcf_seqname_safe
[function]
[call site]
05373
bcf_dec_size_safe
[function]
[call site]
05374
bcf_record_check_err
[function]
[call site]
05375
updatephasing
[function]
[call site]
05376
bcf_seqname_safe
[function]
[call site]
05377
hts_log
[function]
[call site]
05378
get_rlen
[function]
[call site]
05379
bcf_seqname_safe
[function]
[call site]
05380
hts_log
[function]
[call site]
05381
bcf_seqname_safe
[function]
[call site]
05382
hts_log
[function]
[call site]
05383
bcf_subset_format
[function]
[call site]
05384
hts_realloc_or_die
[function]
[call site]
05385
bcf_unpack_fmt_core1
[function]
[call site]
05386
bcf_write
[function]
[call site]
05387
bcf_hdr_sync
[function]
[call site]
05388
bcf_seqname_safe
[function]
[call site]
05389
hts_log
[function]
[call site]
05390
vcf_write
[function]
[call site]
05391
vcf_format
[function]
[call site]
05392
bcf_seqname
[function]
[call site]
05393
hts_log
[function]
[call site]
05394
__errno_location
[call site]
05395
bcf_unpack
[function]
[call site]
05396
get_hdr_aux
[function]
[call site]
05397
calloc
[call site]
05398
kputs
[function]
[call site]
05399
kputc_
[function]
[call site]
05400
kputll
[function]
[call site]
05401
kputc_
[function]
[call site]
05402
kputs
[function]
[call site]
05403
kputs
[function]
[call site]
05404
kputc_
[function]
[call site]
05405
kputc_
[function]
[call site]
05406
bcf_float_is_missing
[function]
[call site]
05407
kputd
[function]
[call site]
05408
kputc_
[function]
[call site]
05409
bcf_seqname_safe
[function]
[call site]
05410
hts_log
[function]
[call site]
05411
__errno_location
[call site]
05412
kputc_
[function]
[call site]
05413
strlen
[call site]
05414
kputsn
[function]
[call site]
05415
kputc_
[function]
[call site]
05416
kputc_
[function]
[call site]
05417
bcf_dec_typed_int1
[function]
[call site]
05418
bcf_dec_size
[function]
[call site]
05419
bcf_seqname_safe
[function]
[call site]
05420
hts_log
[function]
[call site]
05421
__errno_location
[call site]
05422
strlen
[call site]
05423
ks_resize
[function]
[call site]
05424
bcf_fmt_array
[function]
[call site]
05425
bcf_float_is_missing
[function]
[call site]
05426
kputc_
[function]
[call site]
05427
kputd
[function]
[call site]
05428
kputc_
[function]
[call site]
05429
kputc_
[function]
[call site]
05430
kputw
[function]
[call site]
05431
kputc_
[function]
[call site]
05432
kputll
[function]
[call site]
05433
bcf_seqname_safe
[function]
[call site]
05434
hts_log
[function]
[call site]
05435
__errno_location
[call site]
05436
kputc_
[function]
[call site]
05437
kputc_
[function]
[call site]
05438
bcf_dec_typed_int1
[function]
[call site]
05439
bcf_dec_size
[function]
[call site]
05440
kputc_
[function]
[call site]
05441
bcf_seqname_safe
[function]
[call site]
05442
hts_log
[function]
[call site]
05443
__errno_location
[call site]
05444
strlen
[call site]
05445
kputsn
[function]
[call site]
05446
kputsn
[function]
[call site]
05447
kputc_
[function]
[call site]
05448
kputc_
[function]
[call site]
05449
bcf_format_gt_v2
[function]
[call site]
05450
le_to_i8
[function]
[call site]
05451
kputc
[function]
[call site]
05452
kputw
[function]
[call site]
05453
le_to_i16
[function]
[call site]
05454
kputc
[function]
[call site]
05455
kputw
[function]
[call site]
05456
le_to_i32
[function]
[call site]
05457
kputc
[function]
[call site]
05458
kputw
[function]
[call site]
05459
kputc
[function]
[call site]
05460
hts_log
[function]
[call site]
05461
get_hdr_aux
[function]
[call site]
05462
kinsert_char
[function]
[call site]
05463
ks_resize
[function]
[call site]
05464
kinsert_char
[function]
[call site]
05465
kinsert_char
[function]
[call site]
05466
hts_log
[function]
[call site]
05467
__errno_location
[call site]
05468
bcf_fmt_array1
[function]
[call site]
05469
kputc_
[function]
[call site]
05470
kputc_
[function]
[call site]
05471
kputw
[function]
[call site]
05472
le_to_i16
[function]
[call site]
05473
kputc_
[function]
[call site]
05474
kputw
[function]
[call site]
05475
le_to_i32
[function]
[call site]
05476
kputc_
[function]
[call site]
05477
kputw
[function]
[call site]
05478
le_to_u32
[function]
[call site]
05479
kputc_
[function]
[call site]
05480
le_to_float
[function]
[call site]
05481
kputd
[function]
[call site]
05482
hts_log
[function]
[call site]
05483
bcf_fmt_array
[function]
[call site]
05484
kputc_
[function]
[call site]
05485
bcf_fmt_array1
[function]
[call site]
05486
bcf_fmt_array
[function]
[call site]
05487
kputc_
[function]
[call site]
05488
kputsn
[function]
[call site]
05489
kputc
[function]
[call site]
05490
bgzf_flush_try
[function]
[call site]
05491
hts_idx_amend_last
[function]
[call site]
05492
bgzf_write
[function]
[call site]
05493
hwrite
[function]
[call site]
05494
bcf_seqname_safe
[function]
[call site]
05495
hts_idx_tbi_name
[function]
[call site]
05496
strlen
[call site]
05497
realloc
[call site]
05498
strcpy
[call site]
05499
le_to_u32
[function]
[call site]
05500
u32_to_le
[function]
[call site]
05501
bgzf_idx_push
[function]
[call site]
05502
bcf_strerror
[function]
[call site]
05503
add_desc_to_buffer
[function]
[call site]
05504
add_desc_to_buffer
[function]
[call site]
05508
bcf_seqname_safe
[function]
[call site]
05509
hts_log
[function]
[call site]
05510
bcf1_sync
[function]
[call site]
05511
bcf1_sync_id
[function]
[call site]
05512
strcmp
[call site]
05513
strlen
[call site]
05514
bcf_enc_vchar
[function]
[call site]
05515
bcf_enc_size
[function]
[call site]
05516
bcf1_sync_alleles
[function]
[call site]
05517
bcf1_sync_filter
[function]
[call site]
05521
bcf_enc_vint
[function]
[call site]
05522
bcf_enc_vint
[function]
[call site]
05523
bcf1_sync_info
[function]
[call site]
05524
kputsn_
[function]
[call site]
05525
bcf_unpack
[function]
[call site]
05526
bcf1_sync_id
[function]
[call site]
05527
kputsn_
[function]
[call site]
05528
bcf1_sync_alleles
[function]
[call site]
05529
kputsn_
[function]
[call site]
05530
strlen
[call site]
05531
bcf1_sync_filter
[function]
[call site]
05532
kputsn_
[function]
[call site]
05533
bcf_enc_vint
[function]
[call site]
05534
bcf1_sync_info
[function]
[call site]
05535
kputsn_
[function]
[call site]
05536
kputsn_
[function]
[call site]
05537
bcf_seqname_safe
[function]
[call site]
05538
hts_log
[function]
[call site]
05539
u32_to_le
[function]
[call site]
05540
u32_to_le
[function]
[call site]
05541
i32_to_le
[function]
[call site]
05542
u32_to_le
[function]
[call site]
05543
u32_to_le
[function]
[call site]
05544
float_to_le
[function]
[call site]
05545
u16_to_le
[function]
[call site]
05546
u16_to_le
[function]
[call site]
05547
u32_to_le
[function]
[call site]
05548
bgzf_write
[function]
[call site]
05549
bgzf_write
[function]
[call site]
05550
bgzf_write
[function]
[call site]
05551
bgzf_idx_push
[function]
[call site]
05552
bcf_destroy
[function]
[call site]
05553
bcf_empty
[function]
[call site]
05554
bcf_clear
[function]
[call site]
05555
bcf_hdr_destroy
[function]
[call site]
05556
hts_close_or_abort
[function]
[call site]
05557
hts_close
[function]
[call site]
05558
view_vcf
[function]
[call site]
05559