The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 234 | 4078 | hts_str2dbl | call site: 04078 | bam_sym_lookup |
| 143 | 1564 | hts_hopen | call site: 01564 | hts_process_opts |
| 110 | 4790 | idx_find_and_load | call site: 04790 | hts_idx_load3 |
| 103 | 3042 | ks_free | call site: 03042 | cram_get_ref |
| 79 | 2561 | zlib_mem_deflate | call site: 02561 | fqz_compress |
| 77 | 3944 | sam_parse1 | call site: 03944 | sam_dispatcher_read |
| 69 | 1494 | refs2id | call site: 01494 | hts_tpool_init |
| 67 | 2714 | rans_compress_to_4x16 | call site: 02714 | arith_compress_to |
| 64 | 4932 | idx_find_and_load | call site: 04932 | hts_idx_load3 |
| 63 | 1807 | sam_format1_append | call site: 01807 | hts_set_opt |
| 58 | 2983 | cram_flush_container2 | call site: 02983 | cram_index_slice |
| 51 | 1064 | hwrite | call site: 01064 | bgzf_close_mt |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
realloc
[call site]
00024
__ac_FNV1a_hash_string
[function]
[call site]
00025
strcmp
[call site]
00026
__errno_location
[call site]
00027
strerror
[call site]
00028
hts_log
[function]
[call site]
00029
priority
[function]
[call site]
00030
hfile_add_scheme_handler
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
init_add_plugin
[function]
[call site]
00033
hts_log
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hfile_plugin_init_mem
[function]
[call site]
00037
hfile_add_scheme_handler
[function]
[call site]
00038
init_add_plugin
[function]
[call site]
00039
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00040
hfile_add_scheme_handler
[function]
[call site]
00041
init_add_plugin
[function]
[call site]
00042
hfile_plugin_init_libcurl
[function]
[call site]
00043
hts_version
[function]
[call site]
00044
curl_global_init
[call site]
00045
easy_errno
[function]
[call site]
00046
curl_easy_getinfo
[call site]
00047
curl_easy_getinfo
[call site]
00048
http_status_errno
[function]
[call site]
00049
curl_easy_strerror
[call site]
00050
hts_log
[function]
[call site]
00051
__errno_location
[call site]
00052
curl_share_init
[call site]
00053
curl_global_cleanup
[call site]
00054
__errno_location
[call site]
00055
curl_share_setopt
[call site]
00056
share_lock
[function]
[call site]
00057
pthread_mutex_lock
[call site]
00058
curl_share_setopt
[call site]
00059
share_unlock
[function]
[call site]
00060
pthread_mutex_unlock
[call site]
00061
curl_share_setopt
[call site]
00062
curl_share_cleanup
[call site]
00063
curl_global_cleanup
[call site]
00064
__errno_location
[call site]
00065
getenv
[call site]
00066
strdup
[call site]
00067
kh_init_auth_map
[function]
[call site]
00068
calloc
[call site]
00069
__errno_location
[call site]
00070
kh_destroy_auth_map
[function]
[call site]
00071
curl_share_cleanup
[call site]
00072
curl_global_cleanup
[call site]
00073
__errno_location
[call site]
00074
getenv
[call site]
00075
strcmp
[call site]
00076
getenv
[call site]
00077
atoi
[call site]
00078
getenv
[call site]
00079
atol
[call site]
00080
getenv
[call site]
00081
atol
[call site]
00082
getenv
[call site]
00083
atol
[call site]
00084
getenv
[call site]
00085
atol
[call site]
00086
curl_version_info
[call site]
00087
ksprintf
[function]
[call site]
00088
kvsprintf
[function]
[call site]
00089
kputd
[function]
[call site]
00090
kputsn
[function]
[call site]
00091
__errno_location
[call site]
00092
ks_resize
[function]
[call site]
00093
realloc
[call site]
00094
kputsn
[function]
[call site]
00095
kputc
[function]
[call site]
00096
ks_resize
[function]
[call site]
00097
ks_resize
[function]
[call site]
00098
snprintf
[call site]
00099
kputsn
[function]
[call site]
00100
vsnprintf
[call site]
00101
ks_resize
[function]
[call site]
00102
vsnprintf
[call site]
00103
hfile_add_scheme_handler
[function]
[call site]
00104
init_add_plugin
[function]
[call site]
00105
hfile_plugin_init_gcs
[function]
[call site]
00106
hfile_add_scheme_handler
[function]
[call site]
00107
hfile_add_scheme_handler
[function]
[call site]
00108
hfile_add_scheme_handler
[function]
[call site]
00109
init_add_plugin
[function]
[call site]
00110
hfile_plugin_init_s3
[function]
[call site]
00111
hts_version
[function]
[call site]
00112
curl_global_init
[call site]
00113
curl_share_init
[call site]
00114
curl_global_cleanup
[call site]
00115
__errno_location
[call site]
00116
curl_share_setopt
[call site]
00117
share_lock
[function]
[call site]
00118
pthread_mutex_lock
[call site]
00119
curl_share_setopt
[call site]
00120
share_unlock
[function]
[call site]
00121
pthread_mutex_unlock
[call site]
00122
curl_share_setopt
[call site]
00123
curl_share_cleanup
[call site]
00124
curl_global_cleanup
[call site]
00125
__errno_location
[call site]
00126
curl_version_info
[call site]
00127
ksprintf
[function]
[call site]
00128
hfile_add_scheme_handler
[function]
[call site]
00129
hfile_add_scheme_handler
[function]
[call site]
00130
hfile_add_scheme_handler
[function]
[call site]
00131
atexit
[call site]
00132
hfile_exit
[function]
[call site]
00133
hfile_shutdown
[function]
[call site]
00134
pthread_mutex_lock
[call site]
00135
kh_destroy_scheme_string
[function]
[call site]
00136
pthread_mutex_unlock
[call site]
00137
pthread_mutex_destroy
[call site]
00138
pthread_mutex_unlock
[call site]
00139
pthread_mutex_unlock
[call site]
00140
kh_get_scheme_string
[function]
[call site]
00141
strchr
[call site]
00142
strcmp
[call site]
00143
hopen_fd_stdinout
[function]
[call site]
00144
strchr
[call site]
00145
snprintf
[call site]
00146
hdopen
[function]
[call site]
00147
blksize
[function]
[call site]
00148
fstat
[call site]
00149
hfile_init
[function]
[call site]
00150
strchr
[call site]
00151
posix_memalign
[call site]
00152
strchr
[call site]
00153
hfile_destroy
[function]
[call site]
00154
__errno_location
[call site]
00155
__errno_location
[call site]
00156
strchr
[call site]
00157
strchr
[call site]
00158
hopen_fd
[function]
[call site]
00159
hfile_oflags
[function]
[call site]
00160
open
[call site]
00161
blksize
[function]
[call site]
00162
hfile_init
[function]
[call site]
00163
__errno_location
[call site]
00164
close
[call site]
00165
hfile_destroy
[function]
[call site]
00166
hts_hopen
[function]
[call site]
00167
calloc
[call site]
00168
strdup
[call site]
00169
ed_is_big
[function]
[call site]
00170
strchr
[call site]
00171
strncpy
[call site]
00172
strncpy
[call site]
00173
strchr
[call site]
00174
hts_detect_format2
[function]
[call site]
00175
hpeek
[function]
[call site]
00176
refill_buffer
[function]
[call site]
00177
__errno_location
[call site]
00178
memcmp
[call site]
00179
memcmp
[call site]
00180
decompress_peek_gz
[function]
[call site]
00181
hpeek
[function]
[call site]
00182
inflateInit2_
[call site]
00183
inflate
[call site]
00184
inflateReset
[call site]
00185
inflateEnd
[call site]
00186
memcmp
[call site]
00187
memcmp
[call site]
00188
memcmp
[call site]
00189
memcmp
[call site]
00190
decompress_peek_xz
[function]
[call site]
00191
hpeek
[function]
[call site]
00192
lzma_easy_decoder_memusage
[call site]
00193
lzma_stream_decoder
[call site]
00194
lzma_code
[call site]
00195
lzma_end
[call site]
00196
lzma_end
[call site]
00197
memcmp
[call site]
00198
hpeek
[function]
[call site]
00199
strcmp
[call site]
00200
find_file_extension
[function]
[call site]
00201
strstr
[call site]
00202
strlen
[call site]
00203
tolower_c
[function]
[call site]
00204
memcmp
[call site]
00205
memcmp
[call site]
00206
memcmp
[call site]
00207
memcmp
[call site]
00208
memcmp
[call site]
00209
memcmp
[call site]
00210
memcmp
[call site]
00211
strcmp
[call site]
00212
memcmp
[call site]
00213
parse_version
[function]
[call site]
00214
isdigit_c
[function]
[call site]
00215
__ctype_b_loc
[call site]
00216
isdigit_c
[function]
[call site]
00217
memcmp
[call site]
00218
memcmp
[call site]
00219
memcmp
[call site]
00220
memcmp
[call site]
00221
parse_version
[function]
[call site]
00222
memcmp
[call site]
00223
cmp_nonblank
[function]
[call site]
00224
isspace_c
[function]
[call site]
00225
__ctype_b_loc
[call site]
00226
memcmp
[call site]
00227
is_fastaq
[function]
[call site]
00228
is_fastaq
[function]
[call site]
00232
parse_tabbed_text
[function]
[call site]
00233
isdigit_c
[function]
[call site]
00234
strchr
[call site]
00235
isdigit_c
[function]
[call site]
00236
colmatch
[function]
[call site]
00237
colmatch
[function]
[call site]
00238
strstr
[call site]
00239
colmatch
[function]
[call site]
00240
strstr
[call site]
00241
colmatch
[function]
[call site]
00242
colmatch
[function]
[call site]
00243
is_text_only
[function]
[call site]
00244
__errno_location
[call site]
00245
hopen_htsget_redirect
[function]
[call site]
00246
hfile_init
[function]
[call site]
00247
parse_ga4gh_redirect_json
[function]
[call site]
00248
hts_json_fnext
[function]
[call site]
00249
hgetc
[function]
[call site]
00250
hgetc2
[function]
[call site]
00251
refill_buffer
[function]
[call site]
00252
fscan_string
[function]
[call site]
00253
hgetc
[function]
[call site]
00254
hgetc
[function]
[call site]
00255
kputc
[function]
[call site]
00256
kputc
[function]
[call site]
00257
kputc
[function]
[call site]
00258
kputc
[function]
[call site]
00259
kputc
[function]
[call site]
00260
kputc
[function]
[call site]
00261
hgetc
[function]
[call site]
00262
dehex
[function]
[call site]
00263
hgetc
[function]
[call site]
00264
dehex
[function]
[call site]
00265
hgetc
[function]
[call site]
00266
dehex
[function]
[call site]
00267
hgetc
[function]
[call site]
00268
dehex
[function]
[call site]
00269
encode_utf8
[function]
[call site]
00270
kputsn
[function]
[call site]
00271
kputc
[function]
[call site]
00272
kputsn
[function]
[call site]
00273
kputc
[function]
[call site]
00274
hpeek
[function]
[call site]
00275
strchr
[call site]
00276
hgetc
[function]
[call site]
00277
kputc
[function]
[call site]
00278
token_type
[function]
[call site]
00279
hts_json_fnext
[function]
[call site]
00283
strcmp
[call site]
00284
parse_ga4gh_body_json
[function]
[call site]
00285
hts_json_fnext
[function]
[call site]
00286
hts_json_fnext
[function]
[call site]
00287
strcmp
[call site]
00288
hts_json_fnext
[function]
[call site]
00289
hts_json_fnext
[function]
[call site]
00290
hts_realloc_or_die
[function]
[call site]
00291
__errno_location
[call site]
00292
realloc
[call site]
00293
__errno_location
[call site]
00294
strerror
[call site]
00295
hts_log
[function]
[call site]
00296
exit
[call site]
00297
hts_json_fnext
[function]
[call site]
00298
strcmp
[call site]
00299
hts_json_fnext
[function]
[call site]
00300
ks_release
[function]
[call site]
00301
strcmp
[call site]
00302
hts_json_fnext
[function]
[call site]
00303
hts_json_fnext
[function]
[call site]
00304
hts_json_fnext
[function]
[call site]
00305
kputs
[function]
[call site]
00306
__errno_location
[call site]
00307
strlen
[call site]
00308
kputsn
[function]
[call site]
00309
kputs
[function]
[call site]
00310
hts_realloc_or_die
[function]
[call site]
00311
ks_release
[function]
[call site]
00312
hts_json_fskip_value
[function]
[call site]
00313
skip_value
[function]
[call site]
00314
fnext
[function]
[call site]
00315
hts_json_fnext
[function]
[call site]
00316
strcmp
[call site]
00317
hts_json_fnext
[function]
[call site]
00318
hts_log
[function]
[call site]
00319
hts_json_fskip_value
[function]
[call site]
00320
hts_json_fnext
[function]
[call site]
00321
free_all_parts
[function]
[call site]
00322
free_part
[function]
[call site]
00323
hfile_destroy
[function]
[call site]
00324
__errno_location
[call site]
00325
hclose_abruptly
[function]
[call site]
00326
__errno_location
[call site]
00327
hfile_destroy
[function]
[call site]
00328
__errno_location
[call site]
00329
hts_crypt4gh_redirect
[function]
[call site]
00330
strlen
[call site]
00331
snprintf
[call site]
00332
strchr
[call site]
00333
snprintf
[call site]
00334
hopen
[function]
[call site]
00335
hts_detect_format2
[function]
[call site]
00336
strchr
[call site]
00337
strchr
[call site]
00338
strchr
[call site]
00339
strchr
[call site]
00340
strchr
[call site]
00341
strchr
[call site]
00342
strchr
[call site]
00343
strchr
[call site]
00344
abort
[call site]
00345
format_category
[function]
[call site]
00346
__errno_location
[call site]
00347
bgzf_hopen
[function]
[call site]
00348
strchr
[call site]
00349
bgzf_read_init
[function]
[call site]
00350
hpeek
[function]
[call site]
00351
calloc
[call site]
00352
memcmp
[call site]
00353
memcmp
[call site]
00354
hts_log
[function]
[call site]
00355
razf_info
[function]
[call site]
00356
strcmp
[call site]
00357
hseek
[function]
[call site]
00358
writebuffer_is_nonempty
[function]
[call site]
00359
flush_buffer
[function]
[call site]
00360
__errno_location
[call site]
00361
htell
[function]
[call site]
00362
__errno_location
[call site]
00363
__errno_location
[call site]
00364
__errno_location
[call site]
00365
hread
[function]
[call site]
00366
hread2
[function]
[call site]
00367
__errno_location
[call site]
00368
refill_buffer
[function]
[call site]
00369
ed_is_big
[function]
[call site]
00370
ed_swap_8p
[function]
[call site]
00371
ed_swap_8
[function]
[call site]
00372
hts_log
[function]
[call site]
00373
hts_log
[function]
[call site]
00374
__errno_location
[call site]
00375
kh_init_bgzf_cache
[function]
[call site]
00376
calloc
[call site]
00377
strchr
[call site]
00378
bgzf_write_init
[function]
[call site]
00379
calloc
[call site]
00380
mode2level
[function]
[call site]
00381
strchr
[call site]
00382
strchr
[call site]
00383
calloc
[call site]
00384
deflateInit2_
[call site]
00385
bgzf_zerr
[function]
[call site]
00386
hts_log
[function]
[call site]
00390
__errno_location
[call site]
00391
strerror
[call site]
00392
hts_log
[function]
[call site]
00393
__errno_location
[call site]
00394
ed_is_big
[function]
[call site]
00395
cram_dopen
[function]
[call site]
00396
calloc
[call site]
00397
cram_read_file_def
[function]
[call site]
00398
hread
[function]
[call site]
00399
memcmp
[call site]
00400
hts_log
[function]
[call site]
00401
cram_init_tables
[function]
[call site]
00402
cram_init_varint
[function]
[call site]
00403
cram_read_SAM_hdr
[function]
[call site]
00404
int32_decode
[function]
[call site]
00405
hread
[function]
[call site]
00406
hread
[function]
[call site]
00407
cram_read_container
[function]
[call site]
00408
int32_decode
[function]
[call site]
00409
crc32
[call site]
00410
calloc
[call site]
00411
__errno_location
[call site]
00412
cram_free_container
[function]
[call site]
00413
cram_free_compression_header
[function]
[call site]
00414
kh_destroy_map
[function]
[call site]
00415
cram_free_block
[function]
[call site]
00416
kh_destroy_m_s2i
[function]
[call site]
00417
string_pool_destroy
[function]
[call site]
00418
cram_free_block
[function]
[call site]
00419
cram_free_slice
[function]
[call site]
00420
cram_free_block
[function]
[call site]
00421
cram_free_block
[function]
[call site]
00422
cram_free_block
[function]
[call site]
00423
cram_free_slice_header
[function]
[call site]
00424
cram_free_block
[function]
[call site]
00425
cram_free_block
[function]
[call site]
00426
cram_free_block
[function]
[call site]
00427
cram_free_block
[function]
[call site]
00428
cram_free_block
[function]
[call site]
00429
cram_free_block
[function]
[call site]
00430
string_pool_destroy
[function]
[call site]
00431
kh_destroy_m_s2i
[function]
[call site]
00432
kh_destroy_m_s2i
[function]
[call site]
00433
cram_free_slice
[function]
[call site]
00434
cram_stats_free
[function]
[call site]
00435
kh_destroy_m_i2i
[function]
[call site]
00436
cram_free_block
[function]
[call site]
00437
cram_free_block
[function]
[call site]
00438
kh_destroy_m_tagmap
[function]
[call site]
00439
free_bam_list
[function]
[call site]
00440
bam_destroy1
[function]
[call site]
00441
bam_get_mempolicy
[function]
[call site]
00442
bam_get_mempolicy
[function]
[call site]
00443
bam_get_mempolicy
[function]
[call site]
00444
__errno_location
[call site]
00445
cram_free_container
[function]
[call site]
00446
cram_free_container
[function]
[call site]
00447
int32_decode
[function]
[call site]
00448
cram_free_container
[function]
[call site]
00449
hts_log
[function]
[call site]
00450
cram_free_container
[function]
[call site]
00451
cram_free_container
[function]
[call site]
00452
cram_read_block
[function]
[call site]
00453
hgetc
[function]
[call site]
00454
hts_log
[function]
[call site]
00455
crc32
[call site]
00456
hgetc
[function]
[call site]
00457
crc32
[call site]
00458
hread
[function]
[call site]
00459
hread
[function]
[call site]
00460
int32_decode
[function]
[call site]
00461
cram_free_container
[function]
[call site]
00462
cram_uncompress_block
[function]
[call site]
00463
crc32
[call site]
00464
hts_log
[function]
[call site]
00465
__assert_fail
[call site]
00466
zlib_mem_inflate
[function]
[call site]
00467
inflateInit2_
[call site]
00468
hts_log
[function]
[call site]
00469
inflate
[call site]
00470
hts_log
[function]
[call site]
00471
inflateEnd
[call site]
00472
realloc
[call site]
00473
inflateEnd
[call site]
00474
inflateEnd
[call site]
00475
BZ2_bzBuffToBuffDecompress
[call site]
00476
lzma_mem_inflate
[function]
[call site]
00477
lzma_easy_decoder_memusage
[call site]
00478
lzma_stream_decoder
[call site]
00479
realloc
[call site]
00480
lzma_code
[call site]
00481
hts_log
[function]
[call site]
00482
lzma_code
[call site]
00483
hts_log
[function]
[call site]
00484
realloc
[call site]
00485
lzma_end
[call site]
00486
lzma_end
[call site]
00487
rans_uncompress
[function]
[call site]
00488
rans_uncompress_O1
[function]
[call site]
00489
htscodecs_tls_calloc
[function]
[call site]
00490
htscodecs_tls_alloc
[function]
[call site]
00491
pthread_once
[call site]
00492
htscodecs_tls_init
[function]
[call site]
00493
pthread_key_create
[call site]
00494
htscodecs_tls_free_all
[function]
[call site]
00495
fprintf
[call site]
00496
strerror
[call site]
00497
fprintf
[call site]
00498
pthread_getspecific
[call site]
00499
calloc
[call site]
00500
pthread_setspecific
[call site]
00501
fprintf
[call site]
00502
calloc
[call site]
00503
RansDecSymbolInit32
[function]
[call site]
00504
__assert_fail
[call site]
00505
__assert_fail
[call site]
00506
RansDecInit
[function]
[call site]
00507
RansDecInit
[function]
[call site]
00508
RansDecInit
[function]
[call site]
00509
RansDecInit
[function]
[call site]
00510
RansDecAdvanceStep
[function]
[call site]
00511
RansDecAdvanceStep
[function]
[call site]
00512
RansDecAdvanceStep
[function]
[call site]
00513
RansDecAdvanceStep
[function]
[call site]
00514
RansDecRenorm2
[function]
[call site]
00515
RansDecRenorm2
[function]
[call site]
00516
RansDecRenormSafe
[function]
[call site]
00517
RansDecRenormSafe
[function]
[call site]
00518
RansDecRenormSafe
[function]
[call site]
00519
RansDecRenormSafe
[function]
[call site]
00520
RansDecGet
[function]
[call site]
00521
RansDecRenormSafe
[function]
[call site]
00522
htscodecs_tls_free
[function]
[call site]
00523
rans_uncompress_O0
[function]
[call site]
00527
RansDecInit
[function]
[call site]
00528
RansDecInit
[function]
[call site]
00529
RansDecInit
[function]
[call site]
00530
RansDecInit
[function]
[call site]
00531
RansDecRenorm2
[function]
[call site]
00532
RansDecRenorm2
[function]
[call site]
00533
RansDecRenormSafe
[function]
[call site]
00534
RansDecRenormSafe
[function]
[call site]
00535
RansDecRenormSafe
[function]
[call site]
00536
RansDecRenormSafe
[function]
[call site]
00537
fqz_decompress
[function]
[call site]
00538
uncompress_block_fqz2f
[function]
[call site]
00539
var_get_u32
[function]
[call site]
00540
fqz_read_parameters
[function]
[call site]
00541
read_array
[function]
[call site]
00542
fqz_read_parameters1
[function]
[call site]
00543
read_array
[function]
[call site]
00544
read_array
[function]
[call site]
00545
read_array
[function]
[call site]
00546
fqz_free_parameters
[function]
[call site]
00547
fqz_create_models
[function]
[call site]
00548
htscodecs_tls_alloc
[function]
[call site]
00549
SIMPLE_MODEL256_init
[function]
[call site]
00550
SIMPLE_MODEL256_init
[function]
[call site]
00551
SIMPLE_MODEL2_init
[function]
[call site]
00552
SIMPLE_MODEL2_init
[function]
[call site]
00553
SIMPLE_MODEL256_init
[function]
[call site]
00554
RC_SetInput
[function]
[call site]
00555
RC_StartDecode
[function]
[call site]
00556
realloc
[call site]
00557
realloc
[call site]
00558
decompress_new_read
[function]
[call site]
00559
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00560
RC_GetFreq
[function]
[call site]
00561
RC_Decode
[function]
[call site]
00562
SIMPLE_MODEL256_normalize
[function]
[call site]
00563
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00564
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00565
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00566
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00567
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00568
SIMPLE_MODEL2_normalize
[function]
[call site]
00569
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00570
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00571
fqz_update_ctx
[function]
[call site]
00572
realloc
[call site]
00573
realloc
[call site]
00574
RC_FinishDecode
[function]
[call site]
00575
fqz_destroy_models
[function]
[call site]
00576
htscodecs_tls_free
[function]
[call site]
00577
fqz_free_parameters
[function]
[call site]
00578
fqz_destroy_models
[function]
[call site]
00579
fqz_free_parameters
[function]
[call site]
00580
rans_uncompress_4x16
[function]
[call site]
00581
rans_uncompress_to_4x16
[function]
[call site]
00582
var_get_u32
[function]
[call site]
00583
var_get_u32
[function]
[call site]
00584
rans_uncompress_to_4x16
[function]
[call site]
00585
unstripe
[function]
[call site]
00586
var_get_u32
[function]
[call site]
00587
hts_unpack_meta
[function]
[call site]
00588
var_get_u32
[function]
[call site]
00589
var_get_u32
[function]
[call site]
00590
var_get_u32
[function]
[call site]
00591
var_get_u32
[function]
[call site]
00592
rans_dec_func
[function]
[call site]
00593
pthread_once
[call site]
00594
htscodecs_tls_cpu_init
[function]
[call site]
00595
__get_cpuid_max
[function]
[call site]
00596
not_ancient_darwin
[function]
[call site]
00597
strerror
[call site]
00598
fprintf
[call site]
00599
fprintf
[call site]
00600
rans_dec_func
[function]
[call site]
00601
hts_rle_decode
[function]
[call site]
00602
var_get_u32
[function]
[call site]
00603
hts_unpack
[function]
[call site]
00604
arith_uncompress_to
[function]
[call site]
00605
var_get_u32
[function]
[call site]
00606
var_get_u32
[function]
[call site]
00607
arith_uncompress_to
[function]
[call site]
00608
unstripe
[function]
[call site]
00609
var_get_u32
[function]
[call site]
00610
hts_unpack_meta
[function]
[call site]
00611
var_get_u32
[function]
[call site]
00612
BZ2_bzBuffToBuffDecompress
[call site]
00613
arith_uncompress_O1_RLE
[function]
[call site]
00614
htscodecs_tls_alloc
[function]
[call site]
00615
SIMPLE_MODEL256_init
[function]
[call site]
00616
htscodecs_tls_alloc
[function]
[call site]
00617
htscodecs_tls_free
[function]
[call site]
00618
SIMPLE_MODEL258_init
[function]
[call site]
00619
RC_SetInput
[function]
[call site]
00620
RC_StartDecode
[function]
[call site]
00621
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00622
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00623
SIMPLE_MODEL258_normalize
[function]
[call site]
00624
RC_FinishDecode
[function]
[call site]
00625
htscodecs_tls_free
[function]
[call site]
00626
htscodecs_tls_free
[function]
[call site]
00627
htscodecs_tls_free
[function]
[call site]
00628
htscodecs_tls_free
[function]
[call site]
00629
arith_uncompress_O0_RLE
[function]
[call site]
00630
SIMPLE_MODEL256_init
[function]
[call site]
00631
htscodecs_tls_alloc
[function]
[call site]
00632
SIMPLE_MODEL258_init
[function]
[call site]
00633
RC_SetInput
[function]
[call site]
00634
RC_StartDecode
[function]
[call site]
00635
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00636
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00637
RC_FinishDecode
[function]
[call site]
00638
htscodecs_tls_free
[function]
[call site]
00639
htscodecs_tls_free
[function]
[call site]
00640
arith_uncompress_O1
[function]
[call site]
00641
htscodecs_tls_alloc
[function]
[call site]
00642
SIMPLE_MODEL256_init
[function]
[call site]
00643
RC_SetInput
[function]
[call site]
00644
RC_StartDecode
[function]
[call site]
00645
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00646
RC_FinishDecode
[function]
[call site]
00647
htscodecs_tls_free
[function]
[call site]
00648
htscodecs_tls_free
[function]
[call site]
00649
arith_uncompress_O0
[function]
[call site]
00650
SIMPLE_MODEL256_init
[function]
[call site]
00651
RC_SetInput
[function]
[call site]
00652
RC_StartDecode
[function]
[call site]
00653
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00654
RC_FinishDecode
[function]
[call site]
00655
hts_unpack
[function]
[call site]
00656
tok3_decode_names
[function]
[call site]
00657
create_context
[function]
[call site]
00658
fprintf
[call site]
00659
htscodecs_tls_alloc
[function]
[call site]
00660
uncompressed_size
[function]
[call site]
00661
var_get_u32
[function]
[call site]
00662
var_get_u32
[function]
[call site]
00663
uncompress
[function]
[call site]
00664
var_get_u32
[function]
[call site]
00665
arith_decode
[function]
[call site]
00666
var_get_u32
[function]
[call site]
00667
arith_uncompress_to
[function]
[call site]
00668
rans_decode
[function]
[call site]
00669
var_get_u32
[function]
[call site]
00670
rans_uncompress_to_4x16
[function]
[call site]
00671
decode_name
[function]
[call site]
00672
decode_token_type
[function]
[call site]
00673
decode_token_int
[function]
[call site]
00674
strlen
[call site]
00675
strcpy
[call site]
00676
strlen
[call site]
00677
decode_token_type
[function]
[call site]
00678
decode_token_char
[function]
[call site]
00679
decode_token_alpha
[function]
[call site]
00680
decode_token_int1
[function]
[call site]
00681
decode_token_int
[function]
[call site]
00682
append_uint32_fixed
[function]
[call site]
00683
decode_token_int1
[function]
[call site]
00684
append_uint32_fixed
[function]
[call site]
00685
decode_token_int
[function]
[call site]
00686
append_uint32_var
[function]
[call site]
00687
decode_token_int1
[function]
[call site]
00688
append_uint32_var
[function]
[call site]
00689
append_uint32_var
[function]
[call site]
00690
append_uint32_fixed
[function]
[call site]
00691
realloc
[call site]
00692
free_context
[function]
[call site]
00693
pool_destroy
[function]
[call site]
00694
htscodecs_tls_free
[function]
[call site]
00695
free_context
[function]
[call site]
00696
cram_free_container
[function]
[call site]
00697
cram_free_block
[function]
[call site]
00698
int32_get_blk
[function]
[call site]
00699
cram_free_container
[function]
[call site]
00700
cram_free_block
[function]
[call site]
00701
cram_free_container
[function]
[call site]
00702
cram_free_block
[function]
[call site]
00703
cram_free_block
[function]
[call site]
00704
cram_read_block
[function]
[call site]
00705
cram_free_container
[function]
[call site]
00706
cram_free_block
[function]
[call site]
00707
cram_free_container
[function]
[call site]
00708
hread
[function]
[call site]
00709
cram_free_container
[function]
[call site]
00710
cram_free_container
[function]
[call site]
00711
sam_hdr_init
[function]
[call site]
00712
calloc
[call site]
00713
sam_hdr_add_lines
[function]
[call site]
00714
sam_hdr_fill_hrecs
[function]
[call site]
00715
sam_hrecs_new
[function]
[call site]
00716
calloc
[call site]
00717
kh_init_sam_hrecs_t
[function]
[call site]
00718
calloc
[call site]
00719
kh_init_m_s2i
[function]
[call site]
00720
calloc
[call site]
00721
kh_init_m_s2i
[function]
[call site]
00722
kh_init_m_s2i
[function]
[call site]
00723
pool_create
[function]
[call site]
00724
next_power_2
[function]
[call site]
00725
pool_create
[function]
[call site]
00726
string_pool_create
[function]
[call site]
00727
sam_hrecs_init_type_order
[function]
[call site]
00728
calloc
[call site]
00729
kh_destroy_sam_hrecs_t
[function]
[call site]
00730
pool_destroy
[function]
[call site]
00731
pool_destroy
[function]
[call site]
00732
string_pool_destroy
[function]
[call site]
00733
sam_hrecs_refs_from_targets_array
[function]
[call site]
00734
hts_log
[function]
[call site]
00735
realloc
[call site]
00736
kh_grow_to_fit_m_s2i
[function]
[call site]
00737
kh_resize_m_s2i
[function]
[call site]
00738
realloc
[call site]
00739
__ac_FNV1a_hash_string
[function]
[call site]
00740
string_dup
[function]
[call site]
00741
strlen
[call site]
00742
string_ndup
[function]
[call site]
00743
string_alloc
[function]
[call site]
00744
new_string_pool
[function]
[call site]
00745
realloc
[call site]
00746
kh_get_s2i
[function]
[call site]
00747
__ac_FNV1a_hash_string
[function]
[call site]
00748
strcmp
[call site]
00749
kh_put_m_s2i
[function]
[call site]
00750
strcmp
[call site]
00751
hts_log
[function]
[call site]
00752
__errno_location
[call site]
00753
strerror
[call site]
00754
hts_log
[function]
[call site]
00755
kh_get_m_s2i
[function]
[call site]
00756
kh_del_m_s2i
[function]
[call site]
00757
sam_hrecs_free
[function]
[call site]
00758
kh_destroy_sam_hrecs_t
[function]
[call site]
00759
kh_destroy_m_s2i
[function]
[call site]
00760
kh_destroy_m_s2i
[function]
[call site]
00761
kh_destroy_m_s2i
[function]
[call site]
00762
pool_destroy
[function]
[call site]
00763
pool_destroy
[function]
[call site]
00764
string_pool_destroy
[function]
[call site]
00765
sam_hrecs_parse_lines
[function]
[call site]
00766
strlen
[call site]
00767
sam_hrecs_error
[function]
[call site]
00768
hts_log
[function]
[call site]
00769
sam_hrecs_parse_single_line
[function]
[call site]
00770
sam_hrecs_error
[function]
[call site]
00771
isalpha_c
[function]
[call site]
00772
__ctype_b_loc
[call site]
00773
sam_hrecs_error
[function]
[call site]
00774
TYPEKEY
[function]
[call site]
00775
pool_alloc
[function]
[call site]
00776
new_pool
[function]
[call site]
00777
realloc
[call site]
00778
kh_put_sam_hrecs_t
[function]
[call site]
00779
kh_resize_sam_hrecs_t
[function]
[call site]
00780
realloc
[call site]
00781
TYPEKEY
[function]
[call site]
00782
parse_comment_line
[function]
[call site]
00783
sam_hrecs_error
[function]
[call site]
00784
warn_if_known_stderr
[function]
[call site]
00785
kmemmem
[function]
[call site]
00786
boyer_moore
[function]
[call site]
00787
memchr
[call site]
00788
ksBM_prep
[function]
[call site]
00789
calloc
[call site]
00790
calloc
[call site]
00791
karp_rabin
[function]
[call site]
00792
fast_exp
[function]
[call site]
00793
memcmp
[call site]
00794
known_stderr
[function]
[call site]
00795
hts_log
[function]
[call site]
00796
hts_log
[function]
[call site]
00797
kmemmem
[function]
[call site]
00798
known_stderr
[function]
[call site]
00799
kmemmem
[function]
[call site]
00800
known_stderr
[function]
[call site]
00801
pool_alloc
[function]
[call site]
00802
string_ndup
[function]
[call site]
00803
parse_noncomment_line
[function]
[call site]
00804
TYPEKEY
[function]
[call site]
00805
sam_hrecs_error
[function]
[call site]
00806
warn_if_known_stderr
[function]
[call site]
00807
sam_hrecs_error
[function]
[call site]
00808
warn_if_known_stderr
[function]
[call site]
00809
pool_alloc
[function]
[call site]
00810
string_ndup
[function]
[call site]
00811
sam_hrecs_global_list_add
[function]
[call site]
00812
TYPEKEY
[function]
[call site]
00813
__assert_fail
[call site]
00814
sam_hrecs_free_tags
[function]
[call site]
00815
sam_hrecs_free_tags
[function]
[call site]
00816
pool_free
[function]
[call site]
00817
pool_free
[function]
[call site]
00818
TYPEKEY
[function]
[call site]
00819
kh_grow_to_fit_m_s2i
[function]
[call site]
00820
realloc
[call site]
00821
sam_hrecs_update_hashes
[function]
[call site]
00822
TYPEKEY
[function]
[call site]
00823
__assert_fail
[call site]
00824
__assert_fail
[call site]
00825
strtoll
[call site]
00826
__assert_fail
[call site]
00827
hts_log
[function]
[call site]
00828
hts_log
[function]
[call site]
00829
hts_log
[function]
[call site]
00830
kh_get_m_s2i
[function]
[call site]
00831
snprintf
[call site]
00832
sam_hrecs_update
[function]
[call site]
00833
sam_hrecs_vupdate
[function]
[call site]
00834
sam_hrecs_find_key
[function]
[call site]
00835
pool_alloc
[function]
[call site]
00836
strlen
[call site]
00837
string_alloc
[function]
[call site]
00838
snprintf
[call site]
00839
sam_hrecs_add_ref_altnames
[function]
[call site]
00840
kstrtok
[function]
[call site]
00841
strchr
[call site]
00842
strlen
[call site]
00843
string_ndup
[function]
[call site]
00844
kh_put_m_s2i
[function]
[call site]
00845
hts_log
[function]
[call site]
00846
strcmp
[call site]
00847
sam_hrecs_add_ref_altnames
[function]
[call site]
00848
strcmp
[call site]
00849
hts_log
[function]
[call site]
00850
hts_log
[function]
[call site]
00851
realloc
[call site]
00852
kh_put_m_s2i
[function]
[call site]
00853
sam_hrecs_add_ref_altnames
[function]
[call site]
00854
TYPEKEY
[function]
[call site]
00855
sam_hrecs_find_key
[function]
[call site]
00856
hts_log
[function]
[call site]
00857
__assert_fail
[call site]
00858
kh_get_m_s2i
[function]
[call site]
00859
__assert_fail
[call site]
00860
hts_log
[function]
[call site]
00861
realloc
[call site]
00862
kh_put_m_s2i
[function]
[call site]
00863
TYPEKEY
[function]
[call site]
00864
realloc
[call site]
00865
__assert_fail
[call site]
00866
hts_log
[function]
[call site]
00867
kh_get_m_s2i
[function]
[call site]
00868
kh_put_m_s2i
[function]
[call site]
00869
realloc
[call site]
00870
sam_hrecs_free
[function]
[call site]
00871
add_stub_ref_sq_lines
[function]
[call site]
00872
snprintf
[call site]
00873
sam_hrecs_add
[function]
[call site]
00874
sam_hrecs_vadd
[function]
[call site]
00875
TYPEKEY
[function]
[call site]
00876
strncmp
[call site]
00877
sam_hrecs_find_type_id
[function]
[call site]
00878
kh_get_m_s2i
[function]
[call site]
00879
kh_get_m_s2i
[function]
[call site]
00880
kh_get_m_s2i
[function]
[call site]
00881
TYPEKEY
[function]
[call site]
00882
kh_get_sam_hrecs_t
[function]
[call site]
00883
sam_hrecs_vupdate
[function]
[call site]
00884
pool_alloc
[function]
[call site]
00885
kh_put_sam_hrecs_t
[function]
[call site]
00886
__assert_fail
[call site]
00887
sam_hrecs_global_list_add
[function]
[call site]
00888
__assert_fail
[call site]
00889
__assert_fail
[call site]
00890
__assert_fail
[call site]
00891
__assert_fail
[call site]
00892
strncmp
[call site]
00893
pool_alloc
[function]
[call site]
00894
strncmp
[call site]
00895
strlen
[call site]
00896
string_alloc
[function]
[call site]
00897
snprintf
[call site]
00898
strlen
[call site]
00899
string_ndup
[function]
[call site]
00900
strncmp
[call site]
00901
pool_alloc
[function]
[call site]
00902
strncmp
[call site]
00903
strlen
[call site]
00904
string_alloc
[function]
[call site]
00905
snprintf
[call site]
00906
strlen
[call site]
00907
string_ndup
[function]
[call site]
00908
TYPEKEY
[function]
[call site]
00909
sam_hrecs_update_hashes
[function]
[call site]
00910
strncmp
[call site]
00911
hts_log
[function]
[call site]
00912
sam_hrecs_free
[function]
[call site]
00913
rebuild_target_arrays
[function]
[call site]
00914
sam_hdr_update_target_arrays
[function]
[call site]
00915
realloc
[call site]
00916
realloc
[call site]
00917
strcmp
[call site]
00918
strdup
[call site]
00919
kh_get_s2i
[function]
[call site]
00920
kh_del_s2i
[function]
[call site]
00921
kh_init_s2i
[function]
[call site]
00922
calloc
[call site]
00923
kh_put_s2i
[function]
[call site]
00924
kh_resize_s2i
[function]
[call site]
00925
realloc
[call site]
00926
kh_get_s2i
[function]
[call site]
00927
kh_del_s2i
[function]
[call site]
00928
sam_hrecs_parse_lines
[function]
[call site]
00929
rebuild_target_arrays
[function]
[call site]
00930
redact_header_text
[function]
[call site]
00931
__assert_fail
[call site]
00932
sam_hdr_destroy
[function]
[call site]
00933
sam_hrecs_free
[function]
[call site]
00934
kh_destroy_s2i
[function]
[call site]
00935
cram_free_file_def
[function]
[call site]
00936
calloc
[call site]
00937
strncpy
[call site]
00938
cram_init_tables
[function]
[call site]
00939
strrchr
[call site]
00940
strdup
[call site]
00941
refs_create
[function]
[call site]
00942
calloc
[call site]
00943
string_pool_create
[function]
[call site]
00944
kh_init_refs
[function]
[call site]
00945
calloc
[call site]
00946
pthread_mutex_init
[call site]
00947
refs_free
[function]
[call site]
00948
string_pool_destroy
[function]
[call site]
00949
ref_entry_free_seq
[function]
[call site]
00950
mfclose
[function]
[call site]
00951
mfflush
[function]
[call site]
00952
fwrite
[call site]
00953
fflush
[call site]
00954
fseek
[call site]
00955
fwrite
[call site]
00956
fflush
[call site]
00957
ftell
[call site]
00958
fileno
[call site]
00959
ftell
[call site]
00960
ftruncate
[call site]
00961
munmap
[call site]
00962
fclose
[call site]
00963
mfdestroy
[function]
[call site]
00964
kh_destroy_refs
[function]
[call site]
00965
bgzf_close
[function]
[call site]
00966
bgzf_flush
[function]
[call site]
00967
mt_queue
[function]
[call site]
00968
pthread_mutex_lock
[call site]
00969
pool_alloc
[function]
[call site]
00970
pthread_mutex_unlock
[call site]
00971
hts_tpool_dispatch3
[function]
[call site]
00972
pthread_mutex_lock
[call site]
00973
pthread_mutex_unlock
[call site]
00974
__errno_location
[call site]
00975
pthread_mutex_unlock
[call site]
00976
pthread_cond_wait
[call site]
00977
pthread_mutex_unlock
[call site]
00978
wake_next_worker
[function]
[call site]
00979
pthread_mutex_lock
[call site]
00980
__assert_fail
[call site]
00981
__assert_fail
[call site]
00982
pthread_cond_signal
[call site]
00983
pthread_mutex_unlock
[call site]
00984
pthread_mutex_unlock
[call site]
00985
bgzf_encode_level0_func
[function]
[call site]
00986
u16_to_le
[function]
[call site]
00987
u16_to_le
[function]
[call site]
00988
u16_to_le
[function]
[call site]
00989
hts_crc32
[function]
[call site]
00990
crc32
[call site]
00991
u32_to_le
[function]
[call site]
00992
u32_to_le
[function]
[call site]
00993
job_cleanup
[function]
[call site]
00994
pthread_mutex_lock
[call site]
00995
pool_free
[function]
[call site]
00996
pthread_mutex_unlock
[call site]
00997
hts_tpool_dispatch3
[function]
[call site]
00998
bgzf_encode_func
[function]
[call site]
00999
bgzf_compress
[function]
[call site]
01000
u16_to_le
[function]
[call site]
01001
u16_to_le
[function]
[call site]
01002
deflateInit2_
[call site]
01003
bgzf_zerr
[function]
[call site]
01004
hts_log
[function]
[call site]
01005
deflate
[call site]
01006
deflateEnd
[call site]
01007
bgzf_zerr
[function]
[call site]
01008
hts_log
[function]
[call site]
01009
deflateEnd
[call site]
01010
deflateEnd
[call site]
01011
bgzf_zerr
[function]
[call site]
01012
hts_log
[function]
[call site]
01013
packInt16
[function]
[call site]
01014
crc32
[call site]
01015
packInt32
[function]
[call site]
01016
packInt32
[function]
[call site]
01017
job_cleanup
[function]
[call site]
01018
job_cleanup
[function]
[call site]
01019
pthread_mutex_lock
[call site]
01020
pthread_mutex_unlock
[call site]
01021
mt_flush_queue
[function]
[call site]
01022
pthread_mutex_lock
[call site]
01023
hts_tpool_process_is_shutdown
[function]
[call site]
01024
pthread_mutex_lock
[call site]
01025
pthread_mutex_unlock
[call site]
01026
pthread_mutex_unlock
[call site]
01027
hts_usleep
[function]
[call site]
01028
nanosleep
[call site]
01029
pthread_mutex_lock
[call site]
01030
pthread_mutex_unlock
[call site]
01031
hts_tpool_process_flush
[function]
[call site]
01032
pthread_mutex_lock
[call site]
01033
pthread_cond_signal
[call site]
01034
pthread_cond_wait
[call site]
01035
gettimeofday
[call site]
01036
pthread_cond_timedwait
[call site]
01037
gettimeofday
[call site]
01038
pthread_cond_timedwait
[call site]
01039
pthread_mutex_unlock
[call site]
01040
pthread_mutex_lock
[call site]
01041
pthread_mutex_unlock
[call site]
01042
hflush
[function]
[call site]
01043
flush_buffer
[function]
[call site]
01044
__errno_location
[call site]
01045
bgzf_index_add_block
[function]
[call site]
01046
realloc
[call site]
01047
deflate_block
[function]
[call site]
01048
bgzf_compress
[function]
[call site]
01049
bgzf_gzip_compress
[function]
[call site]
01050
deflate
[call site]
01051
bgzf_zerr
[function]
[call site]
01052
hts_log
[function]
[call site]
01053
hts_log
[function]
[call site]
01054
hts_log
[function]
[call site]
01055
bgzf_zerr
[function]
[call site]
01056
hts_log
[function]
[call site]
01057
hwrite
[function]
[call site]
01058
hfile_set_blksize
[function]
[call site]
01059
realloc
[call site]
01060
hwrite2
[function]
[call site]
01061
flush_buffer
[function]
[call site]
01062
__errno_location
[call site]
01063
hwrite2
[function]
[call site]
01064
hts_log
[function]
[call site]
01065
bgzf_close_mt
[function]
[call site]
01066
mt_destroy
[function]
[call site]
01067
pthread_mutex_lock
[call site]
01068
pthread_cond_signal
[call site]
01069
hts_tpool_wake_dispatch
[function]
[call site]
01070
pthread_mutex_lock
[call site]
01071
pthread_cond_signal
[call site]
01072
pthread_mutex_unlock
[call site]
01073
pthread_mutex_unlock
[call site]
01074
hts_tpool_process_is_shutdown
[function]
[call site]
01075
hts_tpool_process_destroy
[function]
[call site]
01076
pthread_mutex_lock
[call site]
01077
pthread_mutex_unlock
[call site]
01078
hts_tpool_process_reset
[function]
[call site]
01079
pthread_mutex_lock
[call site]
01080
pthread_mutex_unlock
[call site]
01081
hts_tpool_delete_result
[function]
[call site]
01082
hts_tpool_process_flush
[function]
[call site]
01083
pthread_mutex_lock
[call site]
01084
pthread_cond_signal
[call site]
01085
pthread_mutex_unlock
[call site]
01086
hts_tpool_delete_result
[function]
[call site]
01087
pthread_mutex_lock
[call site]
01088
hts_tpool_process_detach_locked
[function]
[call site]
01089
hts_tpool_process_shutdown_locked
[function]
[call site]
01090
pthread_cond_broadcast
[call site]
01091
pthread_cond_broadcast
[call site]
01092
pthread_cond_broadcast
[call site]
01093
pthread_cond_broadcast
[call site]
01094
pthread_mutex_unlock
[call site]
01095
pthread_cond_destroy
[call site]
01096
pthread_cond_destroy
[call site]
01097
pthread_cond_destroy
[call site]
01098
pthread_cond_destroy
[call site]
01099
pthread_mutex_unlock
[call site]
01100
pthread_join
[call site]
01101
pthread_mutex_destroy
[call site]
01102
pthread_mutex_destroy
[call site]
01103
pthread_mutex_destroy
[call site]
01104
pthread_cond_destroy
[call site]
01105
pool_free
[function]
[call site]
01106
hts_tpool_destroy
[function]
[call site]
01107
pthread_mutex_lock
[call site]
01108
pthread_cond_signal
[call site]
01109
pthread_mutex_unlock
[call site]
01110
pthread_join
[call site]
01111
pthread_mutex_destroy
[call site]
01112
pthread_cond_destroy
[call site]
01113
pool_destroy
[function]
[call site]
01114
fflush
[call site]
01115
deflate_block
[function]
[call site]
01116
bgzf_zerr
[function]
[call site]
01117
hts_log
[function]
[call site]
01118
bgzf_close_mt
[function]
[call site]
01119
hwrite
[function]
[call site]
01120
hflush
[function]
[call site]
01121
hts_log
[function]
[call site]
01122
bgzf_close_mt
[function]
[call site]
01123
inflateEnd
[call site]
01124
deflateEnd
[call site]
01125
bgzf_zerr
[function]
[call site]
01126
hts_log
[function]
[call site]
01127
hclose
[function]
[call site]
01128
writebuffer_is_nonempty
[function]
[call site]
01129
hflush
[function]
[call site]
01130
__errno_location
[call site]
01131
hfile_destroy
[function]
[call site]
01132
__errno_location
[call site]
01133
bgzf_index_destroy
[function]
[call site]
01134
free_cache
[function]
[call site]
01135
kh_destroy_bgzf_cache
[function]
[call site]
01136
bgzf_clear_private_data
[function]
[call site]
01137
__assert_fail
[call site]
01138
pthread_mutex_destroy
[call site]
01139
pthread_mutex_init
[call site]
01140
pthread_mutex_init
[call site]
01141
pthread_mutex_init
[call site]
01142
pthread_mutex_init
[call site]
01143
cram_new_metrics
[function]
[call site]
01144
calloc
[call site]
01145
kh_init_m_metrics
[function]
[call site]
01146
calloc
[call site]
01147
refs_from_header
[function]
[call site]
01148
sam_hdr_fill_hrecs
[function]
[call site]
01149
realloc
[call site]
01150
kh_get_refs
[function]
[call site]
01151
__ac_FNV1a_hash_string
[function]
[call site]
01152
strcmp
[call site]
01153
calloc
[call site]
01154
string_dup
[function]
[call site]
01155
sam_hrecs_find_type_id
[function]
[call site]
01156
sam_hrecs_find_key
[function]
[call site]
01157
string_dup
[function]
[call site]
01158
sam_hrecs_find_key
[function]
[call site]
01159
strtoll
[call site]
01160
kh_put_refs
[function]
[call site]
01161
kh_resize_refs
[function]
[call site]
01162
realloc
[call site]
01163
cram_set_option
[function]
[call site]
01164
cram_set_voption
[function]
[call site]
01165
__errno_location
[call site]
01166
strdup
[call site]
01167
refs_free
[function]
[call site]
01168
cram_seek_to_refpos
[function]
[call site]
01169
cram_index_query
[function]
[call site]
01170
cram_seek
[function]
[call site]
01171
cram_drain_rqueue
[function]
[call site]
01172
hts_tpool_process_empty
[function]
[call site]
01173
pthread_mutex_lock
[call site]
01174
pthread_mutex_unlock
[call site]
01175
hts_tpool_next_result_wait
[function]
[call site]
01176
pthread_mutex_lock
[call site]
01177
hts_tpool_next_result_locked
[function]
[call site]
01178
pthread_cond_signal
[call site]
01179
wake_next_worker
[function]
[call site]
01180
gettimeofday
[call site]
01181
pthread_mutex_unlock
[call site]
01182
hts_tpool_process_destroy
[function]
[call site]
01183
pthread_cond_timedwait
[call site]
01184
pthread_mutex_unlock
[call site]
01185
hts_tpool_result_data
[function]
[call site]
01186
cram_free_container
[function]
[call site]
01187
cram_free_slice
[function]
[call site]
01188
hts_tpool_delete_result
[function]
[call site]
01189
cram_free_container
[function]
[call site]
01190
cram_free_slice
[function]
[call site]
01191
cram_free_container
[function]
[call site]
01192
hseek
[function]
[call site]
01193
pthread_mutex_lock
[call site]
01194
pthread_mutex_unlock
[call site]
01195
cram_free_container
[function]
[call site]
01196
cram_free_container
[function]
[call site]
01197
pthread_mutex_lock
[call site]
01198
pthread_mutex_unlock
[call site]
01199
pthread_mutex_lock
[call site]
01200
pthread_mutex_unlock
[call site]
01201
pthread_mutex_lock
[call site]
01202
pthread_mutex_unlock
[call site]
01203
cram_load_reference
[function]
[call site]
01204
refs_load_fai
[function]
[call site]
01205
strlen
[call site]
01206
refs_create
[function]
[call site]
01207
bgzf_close
[function]
[call site]
01208
strstr
[call site]
01209
string_ndup
[function]
[call site]
01210
snprintf
[call site]
01211
strcmp
[call site]
01212
string_ndup
[function]
[call site]
01213
snprintf
[call site]
01214
string_dup
[function]
[call site]
01215
snprintf
[call site]
01216
bgzf_open_ref
[function]
[call site]
01217
strncmp
[call site]
01218
hisremote
[function]
[call site]
01219
find_scheme_handler
[function]
[call site]
01220
snprintf
[call site]
01221
access
[call site]
01222
fai_build
[function]
[call site]
01223
fai_build3
[function]
[call site]
01224
fai_build3_core
[function]
[call site]
01225
bgzf_open
[function]
[call site]
01226
strchr
[call site]
01227
hopen
[function]
[call site]
01228
bgzf_read_init
[function]
[call site]
01229
hclose_abruptly
[function]
[call site]
01230
strchr
[call site]
01231
hopen
[function]
[call site]
01232
bgzf_write_init
[function]
[call site]
01233
__errno_location
[call site]
01234
ed_is_big
[function]
[call site]
01235
__errno_location
[call site]
01236
strerror
[call site]
01237
hts_log
[function]
[call site]
01238
bgzf_index_build_init
[function]
[call site]
01239
bgzf_index_destroy
[function]
[call site]
01240
calloc
[call site]
01241
hts_log
[function]
[call site]
01242
fai_build_core
[function]
[call site]
01243
calloc
[call site]
01244
kh_init_s
[function]
[call site]
01245
calloc
[call site]
01246
bgzf_getc_
[function]
[call site]
01247
bgzf_getc
[function]
[call site]
01248
bgzf_read_block
[function]
[call site]
01249
hts_tpool_next_result_wait
[function]
[call site]
01250
hts_tpool_result_data
[function]
[call site]
01251
mt_destroy
[function]
[call site]
01252
hts_tpool_delete_result
[function]
[call site]
01253
hts_log
[function]
[call site]
01254
hts_tpool_delete_result
[function]
[call site]
01255
hts_log
[function]
[call site]
01256
hts_tpool_delete_result
[function]
[call site]
01257
bgzf_index_add_block
[function]
[call site]
01258
pthread_mutex_lock
[call site]
01259
pool_free
[function]
[call site]
01260
pthread_mutex_unlock
[call site]
01261
hts_tpool_delete_result
[function]
[call site]
01262
bgzf_htell
[function]
[call site]
01263
pthread_mutex_lock
[call site]
01264
pthread_mutex_unlock
[call site]
01265
htell
[function]
[call site]
01266
hread
[function]
[call site]
01267
__errno_location
[call site]
01268
strerror
[call site]
01269
hts_log
[function]
[call site]
01270
inflate_gzip_block
[function]
[call site]
01271
hread
[function]
[call site]
01272
inflate
[call site]
01273
bgzf_zerr
[function]
[call site]
01274
hts_log
[function]
[call site]
01275
hpeek
[function]
[call site]
01276
inflateReset
[call site]
01277
bgzf_zerr
[function]
[call site]
01278
hts_log
[function]
[call site]
01279
hts_log
[function]
[call site]
01280
hts_log
[function]
[call site]
01281
load_block_from_cache
[function]
[call site]
01282
kh_get_bgzf_cache
[function]
[call site]
01283
hseek
[function]
[call site]
01284
hts_log
[function]
[call site]
01285
exit
[call site]
01286
hread
[function]
[call site]
01287
hts_log
[function]
[call site]
01288
check_header
[function]
[call site]
01289
unpackInt16
[function]
[call site]
01290
unpackInt16
[function]
[call site]
01291
hts_log
[function]
[call site]
01292
hread
[function]
[call site]
01293
calloc
[call site]
01294
inflateInit2_
[call site]
01295
bgzf_zerr
[function]
[call site]
01296
hts_log
[function]
[call site]
01297
inflate_gzip_block
[function]
[call site]
01298
hts_log
[function]
[call site]
01299
unpackInt16
[function]
[call site]
01300
hts_log
[function]
[call site]
01301
hread
[function]
[call site]
01302
hts_log
[function]
[call site]
01303
inflate_block
[function]
[call site]
01304
le_to_u32
[function]
[call site]
01305
bgzf_uncompress
[function]
[call site]
01306
inflateInit2_
[call site]
01307
bgzf_zerr
[function]
[call site]
01308
hts_log
[function]
[call site]
01309
inflate
[call site]
01310
bgzf_zerr
[function]
[call site]
01311
inflateEnd
[call site]
01312
bgzf_zerr
[function]
[call site]
01313
hts_log
[function]
[call site]
01314
inflateEnd
[call site]
01315
bgzf_zerr
[function]
[call site]
01316
hts_log
[function]
[call site]
01317
crc32
[call site]
01318
hts_log
[function]
[call site]
01319
bgzf_zerr
[function]
[call site]
01320
hts_log
[function]
[call site]
01321
bgzf_htell
[function]
[call site]
01322
bgzf_index_add_block
[function]
[call site]
01323
cache_block
[function]
[call site]
01324
kh_del_bgzf_cache
[function]
[call site]
01325
kh_put_bgzf_cache
[function]
[call site]
01326
kh_resize_bgzf_cache
[function]
[call site]
01327
realloc
[call site]
01328
bgzf_htell
[function]
[call site]
01329
hts_log
[function]
[call site]
01330
hts_log
[function]
[call site]
01331
bgzf_getc_
[function]
[call site]
01332
hts_log
[function]
[call site]
01333
__ctype_b_loc
[call site]
01334
hts_log
[function]
[call site]
01335
fai_insert_index
[function]
[call site]
01336
hts_log
[function]
[call site]
01337
strdup
[call site]
01338
kh_put_s
[function]
[call site]
01339
kh_resize_s
[function]
[call site]
01340
realloc
[call site]
01341
__ac_FNV1a_hash_string
[function]
[call site]
01342
strcmp
[call site]
01343
hts_log
[function]
[call site]
01344
realloc
[call site]
01345
hts_log
[function]
[call site]
01346
__ctype_b_loc
[call site]
01347
kputc
[function]
[call site]
01348
bgzf_getc_
[function]
[call site]
01349
kputsn
[function]
[call site]
01350
hts_log
[function]
[call site]
01351
bgzf_getc_
[function]
[call site]
01352
bgzf_utell
[function]
[call site]
01353
bgzf_getc_
[function]
[call site]
01354
bgzf_utell
[function]
[call site]
01355
hts_log
[function]
[call site]
01356
isgraph_
[function]
[call site]
01357
bgzf_getc_
[function]
[call site]
01358
hts_log
[function]
[call site]
01359
bgzf_getc_
[function]
[call site]
01360
bgzf_utell
[function]
[call site]
01361
hts_log
[function]
[call site]
01362
hts_log
[function]
[call site]
01363
isgraph_
[function]
[call site]
01364
bgzf_getc_
[function]
[call site]
01365
hts_log
[function]
[call site]
01366
hts_log
[function]
[call site]
01367
hts_log
[function]
[call site]
01368
fai_insert_index
[function]
[call site]
01369
hts_log
[function]
[call site]
01370
fai_destroy
[function]
[call site]
01371
kh_destroy_s
[function]
[call site]
01372
bgzf_close
[function]
[call site]
01373
hts_log
[function]
[call site]
01374
ksprintf
[function]
[call site]
01375
ksprintf
[function]
[call site]
01376
bgzf_index_dump
[function]
[call site]
01377
hts_log
[function]
[call site]
01378
__errno_location
[call site]
01379
get_name_suffix
[function]
[call site]
01380
strlen
[call site]
01381
snprintf
[call site]
01382
hopen
[function]
[call site]
01383
bgzf_index_dump_hfile
[function]
[call site]
01384
hts_log
[function]
[call site]
01385
__errno_location
[call site]
01386
bgzf_flush
[function]
[call site]
01387
hwrite_uint64
[function]
[call site]
01388
ed_is_big
[function]
[call site]
01389
ed_swap_8
[function]
[call site]
01390
hwrite
[function]
[call site]
01391
hwrite_uint64
[function]
[call site]
01392
hwrite_uint64
[function]
[call site]
01393
__errno_location
[call site]
01394
strerror
[call site]
01395
hts_log
[function]
[call site]
01396
hclose
[function]
[call site]
01397
__errno_location
[call site]
01398
strerror
[call site]
01399
hts_log
[function]
[call site]
01400
hclose_abruptly
[function]
[call site]
01401
hts_log
[function]
[call site]
01402
bgzf_close
[function]
[call site]
01403
__errno_location
[call site]
01404
strerror
[call site]
01405
hts_log
[function]
[call site]
01406
hopen
[function]
[call site]
01407
__errno_location
[call site]
01408
strerror
[call site]
01409
hts_log
[function]
[call site]
01410
fai_save
[function]
[call site]
01411
kh_get_s
[function]
[call site]
01412
__assert_fail
[call site]
01413
snprintf
[call site]
01414
snprintf
[call site]
01415
hputs
[function]
[call site]
01416
strlen
[call site]
01417
hputs2
[function]
[call site]
01418
hwrite2
[function]
[call site]
01419
hputs
[function]
[call site]
01420
__errno_location
[call site]
01421
strerror
[call site]
01422
hts_log
[function]
[call site]
01423
hclose
[function]
[call site]
01424
__errno_location
[call site]
01425
strerror
[call site]
01426
hts_log
[function]
[call site]
01427
fai_destroy
[function]
[call site]
01428
__errno_location
[call site]
01429
bgzf_close
[function]
[call site]
01430
fai_destroy
[function]
[call site]
01431
__errno_location
[call site]
01432
bgzf_open
[function]
[call site]
01433
perror
[call site]
01434
bgzf_index_load
[function]
[call site]
01435
get_name_suffix
[function]
[call site]
01436
hopen
[function]
[call site]
01437
bgzf_index_load_hfile
[function]
[call site]
01438
calloc
[call site]
01439
hread_uint64
[function]
[call site]
01440
hread
[function]
[call site]
01441
ed_is_big
[function]
[call site]
01442
ed_swap_8p
[function]
[call site]
01443
hread_uint64
[function]
[call site]
01444
hread_uint64
[function]
[call site]
01445
__errno_location
[call site]
01446
strerror
[call site]
01447
hts_log
[function]
[call site]
01448
hclose
[function]
[call site]
01449
__errno_location
[call site]
01450
strerror
[call site]
01451
hts_log
[function]
[call site]
01452
hclose_abruptly
[function]
[call site]
01453
hts_log
[function]
[call site]
01454
bgzf_close
[function]
[call site]
01455
hts_log
[function]
[call site]
01456
hopen
[function]
[call site]
01457
hts_log
[function]
[call site]
01458
perror
[call site]
01459
hgets
[function]
[call site]
01460
__errno_location
[call site]
01461
hgetln
[function]
[call site]
01462
hgetdelim
[function]
[call site]
01463
__errno_location
[call site]
01464
writebuffer_is_nonempty
[function]
[call site]
01465
__errno_location
[call site]
01466
memchr
[call site]
01467
refill_buffer
[function]
[call site]
01468
isspace_c
[function]
[call site]
01469
string_dup
[function]
[call site]
01470
isspace_c
[function]
[call site]
01471
strtoll
[call site]
01472
isspace_c
[function]
[call site]
01473
strtoll
[call site]
01474
isspace_c
[function]
[call site]
01475
strtol
[call site]
01476
isspace_c
[function]
[call site]
01477
strtol
[call site]
01478
kh_put_refs
[function]
[call site]
01479
realloc
[call site]
01480
hclose
[function]
[call site]
01481
hclose_abruptly
[function]
[call site]
01482
refs_free
[function]
[call site]
01483
sanitise_SQ_lines
[function]
[call site]
01484
kh_get_refs
[function]
[call site]
01485
strcmp
[call site]
01486
__assert_fail
[call site]
01487
hts_log
[function]
[call site]
01488
refs_free
[function]
[call site]
01489
refs_create
[function]
[call site]
01490
refs_from_header
[function]
[call site]
01491
refs2id
[function]
[call site]
01492
calloc
[call site]
01493
kh_get_refs
[function]
[call site]
01494
hts_log
[function]
[call site]
01495
__isoc99_sscanf
[call site]
01496
hts_log
[function]
[call site]
01497
hts_log
[function]
[call site]
01498
__errno_location
[call site]
01499
hts_log
[function]
[call site]
01500
cram_init_tables
[function]
[call site]
01501
hts_tpool_init
[function]
[call site]
01502
pthread_mutexattr_init
[call site]
01503
pthread_mutexattr_settype
[call site]
01504
pthread_mutex_init
[call site]
01505
pthread_mutexattr_destroy
[call site]
01506
pthread_mutex_lock
[call site]
01507
pthread_attr_init
[call site]
01508
pthread_attr_getstacksize
[call site]
01509
pthread_attr_setstacksize
[call site]
01510
pthread_cond_init
[call site]
01511
pthread_create
[call site]
01512
tpool_worker
[function]
[call site]
01513
pthread_mutex_lock
[call site]
01514
__assert_fail
[call site]
01515
pthread_cond_wait
[call site]
01516
__assert_fail
[call site]
01517
pthread_cond_broadcast
[call site]
01518
pthread_cond_signal
[call site]
01519
pthread_mutex_unlock
[call site]
01520
hts_tpool_add_result
[function]
[call site]
01521
pthread_mutex_lock
[call site]
01522
pthread_cond_signal
[call site]
01523
pthread_mutex_unlock
[call site]
01524
pthread_mutex_unlock
[call site]
01525
hts_tpool_process_shutdown
[function]
[call site]
01526
pthread_mutex_lock
[call site]
01527
hts_tpool_process_shutdown_locked
[function]
[call site]
01528
pthread_mutex_unlock
[call site]
01529
__assert_fail
[call site]
01530
pthread_cond_broadcast
[call site]
01531
pthread_mutex_unlock
[call site]
01532
pthread_mutex_lock
[call site]
01533
hts_tpool_process_destroy
[function]
[call site]
01534
pthread_mutex_unlock
[call site]
01535
pthread_mutex_lock
[call site]
01536
hts_tpool_process_shutdown_locked
[function]
[call site]
01537
pthread_mutex_unlock
[call site]
01538
pthread_mutex_unlock
[call site]
01539
pthread_attr_destroy
[call site]
01540
__errno_location
[call site]
01541
__errno_location
[call site]
01542
strerror
[call site]
01543
hts_log
[function]
[call site]
01544
pthread_mutex_unlock
[call site]
01545
pthread_join
[call site]
01546
pthread_cond_destroy
[call site]
01547
pthread_mutex_destroy
[call site]
01548
pthread_attr_destroy
[call site]
01549
__errno_location
[call site]
01550
hts_tpool_process_init
[function]
[call site]
01551
pthread_cond_init
[call site]
01552
pthread_cond_init
[call site]
01553
pthread_cond_init
[call site]
01554
pthread_cond_init
[call site]
01555
hts_tpool_process_attach
[function]
[call site]
01556
pthread_mutex_lock
[call site]
01557
__assert_fail
[call site]
01558
pthread_mutex_unlock
[call site]
01559
hts_tpool_size
[function]
[call site]
01560
hts_tpool_process_init
[function]
[call site]
01561
hts_log
[function]
[call site]
01562
__errno_location
[call site]
01563
bgzf_hopen
[function]
[call site]
01564
__errno_location
[call site]
01565
hts_process_opts
[function]
[call site]
01566
hts_parse_opt_list
[function]
[call site]
01567
strncpy
[call site]
01568
hts_opt_add
[function]
[call site]
01569
strdup
[call site]
01570
strchr
[call site]
01571
strcmp
[call site]
01572
strcmp
[call site]
01573
atoi
[call site]
01574
strcmp
[call site]
01575
strcmp
[call site]
01576
atoi
[call site]
01577
strcmp
[call site]
01578
strcmp
[call site]
01579
atoi
[call site]
01580
strcmp
[call site]
01581
strcmp
[call site]
01582
atoi
[call site]
01583
strcmp
[call site]
01584
strcmp
[call site]
01585
atoi
[call site]
01586
strcmp
[call site]
01587
strcmp
[call site]
01588
atoi
[call site]
01589
strcmp
[call site]
01590
strcmp
[call site]
01591
atoi
[call site]
01592
strcmp
[call site]
01593
strcmp
[call site]
01594
atoi
[call site]
01595
strcmp
[call site]
01596
strcmp
[call site]
01597
atoi
[call site]
01598
strcmp
[call site]
01599
strcmp
[call site]
01600
atoi
[call site]
01601
strcmp
[call site]
01602
strcmp
[call site]
01603
atoi
[call site]
01604
strcmp
[call site]
01605
strcmp
[call site]
01606
atoi
[call site]
01607
strcmp
[call site]
01608
strcmp
[call site]
01609
atoi
[call site]
01610
strcmp
[call site]
01611
strcmp
[call site]
01612
atoi
[call site]
01613
strcmp
[call site]
01614
atoi
[call site]
01615
strcmp
[call site]
01616
strcmp
[call site]
01617
strcmp
[call site]
01618
strcmp
[call site]
01619
strcmp
[call site]
01620
strcmp
[call site]
01621
strcmp
[call site]
01622
strcmp
[call site]
01623
strcmp
[call site]
01624
strcmp
[call site]
01625
strcmp
[call site]
01626
strcmp
[call site]
01627
strcmp
[call site]
01628
strcmp
[call site]
01629
atoi
[call site]
01630
strcmp
[call site]
01631
strcmp
[call site]
01632
atoi
[call site]
01633
strcmp
[call site]
01634
strcmp
[call site]
01635
strtol
[call site]
01636
hts_log
[function]
[call site]
01637
strcmp
[call site]
01638
strcmp
[call site]
01639
strtol
[call site]
01640
strcmp
[call site]
01641
strcmp
[call site]
01642
strtol
[call site]
01643
strcmp
[call site]
01644
strcmp
[call site]
01645
strcmp
[call site]
01646
strcmp
[call site]
01647
atoi
[call site]
01648
strcmp
[call site]
01649
strcmp
[call site]
01650
atoi
[call site]
01651
strcmp
[call site]
01652
strcmp
[call site]
01653
strtol
[call site]
01654
strcmp
[call site]
01655
strcmp
[call site]
01656
strtol
[call site]
01657
strcmp
[call site]
01658
strcmp
[call site]
01659
strcmp
[call site]
01660
strcmp
[call site]
01661
strcmp
[call site]
01662
strcmp
[call site]
01663
strcmp
[call site]
01664
strcmp
[call site]
01665
strcmp
[call site]
01666
strcmp
[call site]
01667
strcmp
[call site]
01668
strcmp
[call site]
01669
strcmp
[call site]
01670
strcmp
[call site]
01671
strcmp
[call site]
01672
strcmp
[call site]
01673
hts_log
[function]
[call site]
01674
hts_opt_apply
[function]
[call site]
01675
strdup
[call site]
01676
hts_set_opt
[function]
[call site]
01677
hts_set_threads
[function]
[call site]
01678
sam_set_threads
[function]
[call site]
01679
hts_tpool_init
[function]
[call site]
01680
sam_set_thread_pool
[function]
[call site]
01681
sam_state_create
[function]
[call site]
01682
calloc
[call site]
01683
pthread_mutex_init
[call site]
01684
pthread_mutex_init
[call site]
01685
pthread_cond_init
[call site]
01686
hts_tpool_size
[function]
[call site]
01687
hts_tpool_process_init
[function]
[call site]
01688
sam_state_destroy
[function]
[call site]
01689
pthread_mutex_lock
[call site]
01690
pthread_cond_signal
[call site]
01691
hts_tpool_wake_dispatch
[function]
[call site]
01692
hts_tpool_wake_dispatch
[function]
[call site]
01693
pthread_mutex_unlock
[call site]
01694
hts_usleep
[function]
[call site]
01695
pthread_mutex_lock
[call site]
01696
pthread_mutex_unlock
[call site]
01697
hts_tpool_dispatch
[function]
[call site]
01698
hts_tpool_dispatch3
[function]
[call site]
01699
sam_format_worker
[function]
[call site]
01700
pthread_mutex_lock
[call site]
01701
pthread_mutex_unlock
[call site]
01702
calloc
[call site]
01703
sam_state_err
[function]
[call site]
01704
pthread_mutex_lock
[call site]
01705
pthread_mutex_unlock
[call site]
01706
sam_format1_append
[function]
[call site]
01707
kputsn_
[function]
[call site]
01708
__errno_location
[call site]
01709
ks_resize
[function]
[call site]
01710
kputc_
[function]
[call site]
01711
ks_resize
[function]
[call site]
01712
kputw
[function]
[call site]
01713
ks_resize
[function]
[call site]
01714
kputuw
[function]
[call site]
01715
ks_resize
[function]
[call site]
01716
ks_resize
[function]
[call site]
01717
kputc_
[function]
[call site]
01718
kputs
[function]
[call site]
01719
kputc_
[function]
[call site]
01720
kputsn_
[function]
[call site]
01721
kputll
[function]
[call site]
01722
ks_resize
[function]
[call site]
01723
kputuw
[function]
[call site]
01724
kputc_
[function]
[call site]
01725
kputw
[function]
[call site]
01726
kputc_
[function]
[call site]
01727
kputw
[function]
[call site]
01728
kputc_
[function]
[call site]
01729
kputc_
[function]
[call site]
01730
kputc_
[function]
[call site]
01731
kputsn_
[function]
[call site]
01732
kputsn_
[function]
[call site]
01733
kputs
[function]
[call site]
01734
kputc_
[function]
[call site]
01735
kputll
[function]
[call site]
01736
kputc_
[function]
[call site]
01737
kputll
[function]
[call site]
01738
kputc_
[function]
[call site]
01739
ks_resize
[function]
[call site]
01740
nibble2base
[function]
[call site]
01741
add33
[function]
[call site]
01742
kputsn_
[function]
[call site]
01743
kputc_
[function]
[call site]
01744
sam_format_aux1
[function]
[call site]
01745
kputsn_
[function]
[call site]
01746
kputc_
[function]
[call site]
01747
kputsn_
[function]
[call site]
01748
kputw
[function]
[call site]
01749
kputsn_
[function]
[call site]
01750
kputw
[function]
[call site]
01751
kputsn_
[function]
[call site]
01752
le_to_u16
[function]
[call site]
01753
kputuw
[function]
[call site]
01754
kputsn_
[function]
[call site]
01755
le_to_i16
[function]
[call site]
01756
le_to_u16
[function]
[call site]
01757
kputw
[function]
[call site]
01758
kputsn_
[function]
[call site]
01759
le_to_u32
[function]
[call site]
01760
kputuw
[function]
[call site]
01761
kputsn_
[function]
[call site]
01762
le_to_i32
[function]
[call site]
01763
le_to_u32
[function]
[call site]
01764
kputw
[function]
[call site]
01765
kputsn_
[function]
[call site]
01766
kputc_
[function]
[call site]
01767
le_to_float
[function]
[call site]
01768
le_to_u32
[function]
[call site]
01769
ksprintf
[function]
[call site]
01770
le_to_double
[function]
[call site]
01771
le_to_u64
[function]
[call site]
01772
ksprintf
[function]
[call site]
01773
kputc_
[function]
[call site]
01774
kputc_
[function]
[call site]
01775
kputc_
[function]
[call site]
01776
kputsn
[function]
[call site]
01777
le_to_u32
[function]
[call site]
01778
kputsn_
[function]
[call site]
01779
kputc
[function]
[call site]
01780
ks_expand
[function]
[call site]
01781
__errno_location
[call site]
01782
ks_resize
[function]
[call site]
01783
kputw
[function]
[call site]
01784
ks_expand
[function]
[call site]
01785
kputuw
[function]
[call site]
01786
ks_expand
[function]
[call site]
01787
le_to_i16
[function]
[call site]
01788
kputw
[function]
[call site]
01789
ks_expand
[function]
[call site]
01790
le_to_u16
[function]
[call site]
01791
kputuw
[function]
[call site]
01792
ks_expand
[function]
[call site]
01793
le_to_i32
[function]
[call site]
01794
kputw
[function]
[call site]
01795
ks_expand
[function]
[call site]
01796
le_to_u32
[function]
[call site]
01797
kputuw
[function]
[call site]
01798
ks_expand
[function]
[call site]
01799
le_to_float
[function]
[call site]
01800
kputd
[function]
[call site]
01801
__errno_location
[call site]
01802
hts_log
[function]
[call site]
01803
__errno_location
[call site]
01804
kputsn
[function]
[call site]
01805
hts_log
[function]
[call site]
01806
__errno_location
[call site]
01807
hts_log
[function]
[call site]
01808
__errno_location
[call site]
01809
__errno_location
[call site]
01810
sam_state_err
[function]
[call site]
01811
kputc
[function]
[call site]
01812
pthread_mutex_lock
[call site]
01813
pthread_mutex_unlock
[call site]
01814
hts_tpool_process_flush
[function]
[call site]
01815
pthread_mutex_lock
[call site]
01816
pthread_mutex_unlock
[call site]
01817
hts_tpool_process_empty
[function]
[call site]
01818
hts_usleep
[function]
[call site]
01819
pthread_mutex_lock
[call site]
01820
hts_tpool_process_is_shutdown
[function]
[call site]
01821
pthread_mutex_unlock
[call site]
01822
hts_tpool_process_shutdown
[function]
[call site]
01823
pthread_join
[call site]
01824
hts_tpool_process_destroy
[function]
[call site]
01825
hts_tpool_destroy
[function]
[call site]
01826
pthread_mutex_destroy
[call site]
01827
pthread_mutex_destroy
[call site]
01828
pthread_cond_destroy
[call site]
01829
sam_free_sp_bams
[function]
[call site]
01830
sam_free_sp_bams
[function]
[call site]
01831
bam_hdr_destroy
[function]
[call site]
01832
sam_hdr_destroy
[function]
[call site]
01833
bgzf_thread_pool
[function]
[call site]
01834
calloc
[call site]
01835
hts_tpool_size
[function]
[call site]
01836
hts_tpool_process_init
[function]
[call site]
01837
hts_tpool_process_ref_incr
[function]
[call site]
01838
pthread_mutex_lock
[call site]
01839
pthread_mutex_unlock
[call site]
01840
pool_create
[function]
[call site]
01841
pthread_mutex_init
[call site]
01842
pthread_mutex_init
[call site]
01843
pthread_mutex_init
[call site]
01844
pthread_cond_init
[call site]
01845
pthread_create
[call site]
01846
hts_tpool_destroy
[function]
[call site]
01847
hts_get_bgzfp
[function]
[call site]
01848
bgzf_mt
[function]
[call site]
01849
hts_tpool_init
[function]
[call site]
01850
bgzf_thread_pool
[function]
[call site]
01851
hts_tpool_destroy
[function]
[call site]
01852
hts_set_opt
[function]
[call site]
01853
hts_hfile
[function]
[call site]
01854
bgzf_hfile
[function]
[call site]
01855
cram_hfile
[function]
[call site]
01856
bgzf_hfile
[function]
[call site]
01857
hfile_set_blksize
[function]
[call site]
01858
hts_log
[function]
[call site]
01859
hts_log
[function]
[call site]
01860
hts_set_thread_pool
[function]
[call site]
01861
sam_set_thread_pool
[function]
[call site]
01862
hts_get_bgzfp
[function]
[call site]
01863
bgzf_thread_pool
[function]
[call site]
01864
hts_set_opt
[function]
[call site]
01865
hts_set_cache_size
[function]
[call site]
01866
hts_get_bgzfp
[function]
[call site]
01867
bgzf_set_cache_size
[function]
[call site]
01868
fastq_state_set
[function]
[call site]
01869
fastq_state_init
[function]
[call site]
01870
strcmp
[call site]
01874
kh_init_tag
[function]
[call site]
01875
calloc
[call site]
01876
strlen
[call site]
01877
hts_log
[function]
[call site]
01878
kh_put_tag
[function]
[call site]
01879
kh_resize_tag
[function]
[call site]
01880
realloc
[call site]
01881
strncpy
[call site]
01882
strcmp
[call site]
01883
__ctype_b_loc
[call site]
01884
isalnum_c
[function]
[call site]
01885
strncpy
[call site]
01886
hts_log
[function]
[call site]
01887
regfree
[call site]
01888
regcomp
[call site]
01889
hts_log
[function]
[call site]
01890
fastq_state_set
[function]
[call site]
01891
fastq_state_set
[function]
[call site]
01892
cram_set_option
[function]
[call site]
01893
hts_set_filter_expression
[function]
[call site]
01894
hts_filter_free
[function]
[call site]
01895
regfree
[call site]
01896
hts_filter_init
[function]
[call site]
01897
cram_set_voption
[function]
[call site]
01901
hts_set_opt
[function]
[call site]
01902
hts_opt_free
[function]
[call site]
01903
hts_opt_free
[function]
[call site]
01904
hclose_abruptly
[function]
[call site]
01905
hts_log
[function]
[call site]
01906
hclose_abruptly
[function]
[call site]
01907
hclose
[function]
[call site]
01908
abort
[call site]
01909
hts_close
[function]
[call site]
01910
__errno_location
[call site]
01911
bgzf_close
[function]
[call site]
01912
cram_eof
[function]
[call site]
01913
hts_log
[function]
[call site]
01914
cram_close
[function]
[call site]
01915
cram_update_curr_slice
[function]
[call site]
01916
cram_flush_container_mt
[function]
[call site]
01917
pthread_mutex_lock
[call site]
01918
reset_metrics
[function]
[call site]
01919
pthread_mutex_unlock
[call site]
01920
hts_tpool_process_flush
[function]
[call site]
01921
pthread_mutex_lock
[call site]
01922
pthread_mutex_unlock
[call site]
01923
cram_flush_container
[function]
[call site]
01924
cram_encode_container
[function]
[call site]
01925
pthread_mutex_lock
[call site]
01926
hts_log
[function]
[call site]
01927
hts_log
[function]
[call site]
01928
pthread_mutex_unlock
[call site]
01929
pthread_mutex_lock
[call site]
01930
pthread_mutex_unlock
[call site]
01931
cram_get_ref
[function]
[call site]
01932
pthread_mutex_lock
[call site]
01933
hts_log
[function]
[call site]
01934
pthread_mutex_unlock
[call site]
01935
hts_log
[function]
[call site]
01936
pthread_mutex_unlock
[call site]
01937
hts_log
[function]
[call site]
01938
pthread_mutex_unlock
[call site]
01939
pthread_mutex_lock
[call site]
01940
hts_log
[function]
[call site]
01941
cram_populate_ref
[function]
[call site]
01942
getenv
[call site]
01943
getenv
[call site]
01944
hts_log
[function]
[call site]
01945
sam_hrecs_find_type_id
[function]
[call site]
01946
sam_hrecs_find_key
[function]
[call site]
01947
hts_log
[function]
[call site]
01948
expand_cache_path
[function]
[call site]
01949
strchr
[call site]
01950
strncpy
[call site]
01951
strlen
[call site]
01952
strcpy
[call site]
01953
strtol
[call site]
01954
strlen
[call site]
01955
strncpy
[call site]
01956
strlen
[call site]
01957
strcpy
[call site]
01958
strlen
[call site]
01959
strcpy
[call site]
01960
stat
[call site]
01961
stat
[call site]
01962
bgzf_open
[function]
[call site]
01963
string_dup
[function]
[call site]
01964
bgzf_close
[function]
[call site]
01965
open_path_mfile
[function]
[call site]
01966
getenv
[call site]
01967
tokenise_search_path
[function]
[call site]
01968
strlen
[call site]
01969
strncmp
[call site]
01970
strncmp
[call site]
01971
strncmp
[call site]
01972
strncmp
[call site]
01973
strncmp
[call site]
01974
strncmp
[call site]
01975
strncmp
[call site]
01976
strncmp
[call site]
01977
strncmp
[call site]
01978
strncmp
[call site]
01979
find_file_url
[function]
[call site]
01980
expand_path
[function]
[call site]
01981
strlen
[call site]
01982
strlen
[call site]
01983
hts_log
[function]
[call site]
01984
strchr
[call site]
01985
strtol
[call site]
01986
hopen
[function]
[call site]
01987
__errno_location
[call site]
01988
__errno_location
[call site]
01989
strerror
[call site]
01990
hts_log
[function]
[call site]
01991
mfcreate
[function]
[call site]
01992
hread
[function]
[call site]
01993
mfwrite
[function]
[call site]
01994
realloc
[call site]
01995
hclose_abruptly
[function]
[call site]
01996
hclose
[function]
[call site]
01997
__errno_location
[call site]
01998
strerror
[call site]
01999
hts_log
[function]
[call site]
02000
mrewind
[function]
[call site]
02001
mfdestroy
[function]
[call site]
02002
strncmp
[call site]
02003
hisremote
[function]
[call site]
02004
find_file_url
[function]
[call site]
02005
find_file_dir
[function]
[call site]
02006
expand_path
[function]
[call site]
02007
is_file
[function]
[call site]
02008
stat
[call site]
02009
mfopen
[function]
[call site]
02010
fopen
[call site]
02011
mfreopen
[function]
[call site]
02012
strchr
[call site]
02013
strchr
[call site]
02014
strchr
[call site]
02015
strchr
[call site]
02016
strchr
[call site]
02017
strchr
[call site]
02018
strchr
[call site]
02019
mfcreate
[function]
[call site]
02020
mfmmap
[function]
[call site]
02021
mfload
[function]
[call site]
02025
stat
[call site]
02026
realloc
[call site]
02027
fread
[call site]
02028
feof
[call site]
02029
fseek
[call site]
02030
mfcreate
[function]
[call site]
02031
hts_log
[function]
[call site]
02032
fseek
[call site]
02033
strlen
[call site]
02034
strcpy
[call site]
02035
strrchr
[call site]
02036
find_file_dir
[function]
[call site]
02037
mfsteal
[function]
[call site]
02038
mfdetach
[function]
[call site]
02039
mfflush
[function]
[call site]
02040
fclose
[call site]
02041
mfdestroy
[function]
[call site]
02042
sam_hrecs_find_key
[function]
[call site]
02043
strstr
[call site]
02044
strncmp
[call site]
02045
hts_log
[function]
[call site]
02046
strncmp
[call site]
02047
bgzf_close
[function]
[call site]
02048
refs_load_fai
[function]
[call site]
02049
sanitise_SQ_lines
[function]
[call site]
02050
bgzf_close
[function]
[call site]
02051
refs2id
[function]
[call site]
02052
expand_cache_path
[function]
[call site]
02053
hts_log
[function]
[call site]
02054
mkdir_prefix
[function]
[call site]
02055
strrchr
[call site]
02056
is_directory
[function]
[call site]
02057
stat
[call site]
02058
mkdir
[call site]
02059
chmod
[call site]
02060
mkdir_prefix
[function]
[call site]
02061
mkdir
[call site]
02062
chmod
[call site]
02063
hts_open_tmpfile
[function]
[call site]
02064
getpid
[call site]
02065
time
[call site]
02066
clock
[call site]
02067
ks_clear
[function]
[call site]
02068
ksprintf
[function]
[call site]
02069
hopen
[function]
[call site]
02070
__errno_location
[call site]
02071
perror
[call site]
02072
hts_md5_init
[function]
[call site]
02073
hts_md5_reset
[function]
[call site]
02074
hclose_abruptly
[function]
[call site]
02075
unlink
[call site]
02076
hts_md5_update
[function]
[call site]
02077
body
[function]
[call site]
02078
body
[function]
[call site]
02079
hts_md5_final
[function]
[call site]
02080
body
[function]
[call site]
02081
body
[function]
[call site]
02082
hts_md5_destroy
[function]
[call site]
02083
hts_md5_hex
[function]
[call site]
02084
strncmp
[call site]
02085
hts_log
[function]
[call site]
02086
hclose_abruptly
[function]
[call site]
02087
unlink
[call site]
02088
hwrite
[function]
[call site]
02089
hclose
[function]
[call site]
02090
chmod
[call site]
02091
rename
[call site]
02092
__errno_location
[call site]
02093
strerror
[call site]
02094
hts_log
[function]
[call site]
02095
unlink
[call site]
02096
hts_log
[function]
[call site]
02097
hts_log
[function]
[call site]
02098
pthread_mutex_unlock
[call site]
02099
pthread_mutex_unlock
[call site]
02100
cram_ref_incr_locked
[function]
[call site]
02101
cram_ref_incr_locked
[function]
[call site]
02102
cram_ref_load
[function]
[call site]
02103
__assert_fail
[call site]
02104
__assert_fail
[call site]
02105
ref_entry_free_seq
[function]
[call site]
02106
strcmp
[call site]
02107
bgzf_close
[function]
[call site]
02108
bgzf_open_ref
[function]
[call site]
02109
load_ref_portion
[function]
[call site]
02110
bgzf_useek
[function]
[call site]
02111
hseek
[function]
[call site]
02112
bgzf_read_block
[function]
[call site]
02113
bgzf_seek_common
[function]
[call site]
02114
pthread_mutex_lock
[call site]
02115
pthread_cond_signal
[call site]
02116
hts_tpool_wake_dispatch
[function]
[call site]
02117
pthread_cond_wait
[call site]
02118
pthread_cond_signal
[call site]
02119
abort
[call site]
02120
__errno_location
[call site]
02121
pthread_mutex_unlock
[call site]
02122
pthread_mutex_unlock
[call site]
02123
hseek
[function]
[call site]
02124
bgzf_read_block
[function]
[call site]
02125
__assert_fail
[call site]
02126
perror
[call site]
02127
bgzf_read
[function]
[call site]
02128
__assert_fail
[call site]
02129
bgzf_read_block
[function]
[call site]
02130
hts_log
[function]
[call site]
02131
bgzf_htell
[function]
[call site]
02132
hts_log
[function]
[call site]
02133
bgzf_htell
[function]
[call site]
02134
perror
[call site]
02135
isspace_c
[function]
[call site]
02136
isspace_c
[function]
[call site]
02137
isspace_c
[function]
[call site]
02138
hts_log
[function]
[call site]
02139
toupper_c
[function]
[call site]
02140
toupper
[call site]
02141
pthread_mutex_unlock
[call site]
02142
pthread_mutex_unlock
[call site]
02143
cram_ref_incr_locked
[function]
[call site]
02144
pthread_mutex_unlock
[call site]
02145
pthread_mutex_unlock
[call site]
02146
pthread_mutex_unlock
[call site]
02147
pthread_mutex_unlock
[call site]
02148
strcmp
[call site]
02149
bgzf_close
[function]
[call site]
02150
bgzf_open_ref
[function]
[call site]
02151
pthread_mutex_unlock
[call site]
02152
pthread_mutex_unlock
[call site]
02153
load_ref_portion
[function]
[call site]
02154
pthread_mutex_unlock
[call site]
02155
pthread_mutex_unlock
[call site]
02156
pthread_mutex_unlock
[call site]
02157
pthread_mutex_unlock
[call site]
02158
hts_log
[function]
[call site]
02159
hts_log
[function]
[call site]
02160
pthread_mutex_lock
[call site]
02161
pthread_mutex_unlock
[call site]
02162
hts_log
[function]
[call site]
02163
hts_log
[function]
[call site]
02164
hts_log
[function]
[call site]
02165
hts_log
[function]
[call site]
02166
pthread_mutex_unlock
[call site]
02167
validate_md5
[function]
[call site]
02168
sam_hrecs_find_type_id
[function]
[call site]
02169
sam_hrecs_find_key
[function]
[call site]
02170
hts_md5_init
[function]
[call site]
02171
hts_md5_update
[function]
[call site]
02172
hts_md5_final
[function]
[call site]
02173
hts_md5_destroy
[function]
[call site]
02174
hts_md5_hex
[function]
[call site]
02175
strcmp
[call site]
02176
hts_log
[function]
[call site]
02177
hts_log
[function]
[call site]
02178
cram_ref_incr
[function]
[call site]
02179
pthread_mutex_lock
[call site]
02180
cram_ref_incr_locked
[function]
[call site]
02181
pthread_mutex_unlock
[call site]
02182
cram_get_ref
[function]
[call site]
02183
validate_md5
[function]
[call site]
02184
hts_log
[function]
[call site]
02185
__assert_fail
[call site]
02186
lossy_read_names
[function]
[call site]
02187
kh_init_m_s2u64
[function]
[call site]
02188
calloc
[call site]
02189
expected_template_count
[function]
[call site]
02190
bam_aux_get
[function]
[call site]
02191
bam_aux_first
[function]
[call site]
02192
__errno_location
[call site]
02193
skip_aux
[function]
[call site]
02194
aux_type2size
[function]
[call site]
02195
memchr
[call site]
02196
aux_type2size
[function]
[call site]
02197
le_to_u32
[function]
[call site]
02198
bam_aux_next
[function]
[call site]
02199
skip_aux
[function]
[call site]
02200
__errno_location
[call site]
02201
hts_log
[function]
[call site]
02202
__errno_location
[call site]
02203
hts_log
[function]
[call site]
02204
__errno_location
[call site]
02205
bam_data_end
[function]
[call site]
02206
bam_aux2i_end
[function]
[call site]
02207
__errno_location
[call site]
02208
__errno_location
[call site]
02209
__errno_location
[call site]
02210
le_to_i16
[function]
[call site]
02211
le_to_u16
[function]
[call site]
02212
__errno_location
[call site]
02213
le_to_u16
[function]
[call site]
02214
__errno_location
[call site]
02215
le_to_i32
[function]
[call site]
02216
le_to_u32
[function]
[call site]
02217
__errno_location
[call site]
02218
le_to_u32
[function]
[call site]
02219
__errno_location
[call site]
02220
bam_aux_get
[function]
[call site]
02221
kh_put_m_s2u64
[function]
[call site]
02222
kh_resize_m_s2u64
[function]
[call site]
02223
realloc
[call site]
02224
__ac_FNV1a_hash_string
[function]
[call site]
02225
strcmp
[call site]
02226
kh_get_m_s2u64
[function]
[call site]
02227
kh_destroy_m_s2u64
[function]
[call site]
02228
cram_generate_reference
[function]
[call site]
02229
extend_ref
[function]
[call site]
02230
realloc
[call site]
02231
realloc
[call site]
02232
hts_log
[function]
[call site]
02233
cram_add_to_ref
[function]
[call site]
02234
bam_aux_get
[function]
[call site]
02235
cram_add_to_ref_MD
[function]
[call site]
02236
bam_cigar2rlen
[function]
[call site]
02237
extend_ref
[function]
[call site]
02238
__ctype_b_loc
[call site]
02239
hts_str2uint
[function]
[call site]
02240
extend_ref
[function]
[call site]
02241
next_cigar_op
[function]
[call site]
02242
hts_log
[function]
[call site]
02243
__ctype_b_loc
[call site]
02244
extend_ref
[function]
[call site]
02245
next_cigar_op
[function]
[call site]
02246
hts_log
[function]
[call site]
02247
extend_ref
[function]
[call site]
02248
next_cigar_op
[function]
[call site]
02249
extend_ref
[function]
[call site]
02250
hts_log
[function]
[call site]
02251
hts_log
[function]
[call site]
02252
pthread_mutex_lock
[call site]
02253
pthread_mutex_unlock
[call site]
02254
pthread_mutex_lock
[call site]
02255
pthread_mutex_unlock
[call site]
02256
cram_ref_decr
[function]
[call site]
02257
pthread_mutex_lock
[call site]
02258
cram_ref_decr_locked
[function]
[call site]
02259
__assert_fail
[call site]
02260
ref_entry_free_seq
[function]
[call site]
02261
pthread_mutex_unlock
[call site]
02262
cram_get_ref
[function]
[call site]
02263
hts_log
[function]
[call site]
02264
validate_md5
[function]
[call site]
02265
process_one_read
[function]
[call site]
02266
bam_aux_get
[function]
[call site]
02267
bam_aux_get
[function]
[call site]
02268
cram_stats_add
[function]
[call site]
02269
kh_init_m_i2i
[function]
[call site]
02270
calloc
[call site]
02271
kh_put_m_i2i
[function]
[call site]
02272
kh_resize_m_i2i
[function]
[call site]
02273
realloc
[call site]
02274
cram_stats_add
[function]
[call site]
02275
cram_stats_add
[function]
[call site]
02276
block_grow
[function]
[call site]
02277
block_resize
[function]
[call site]
02278
block_resize_exact
[function]
[call site]
02279
realloc
[call site]
02280
block_grow
[function]
[call site]
02281
nibble2base
[function]
[call site]
02282
hts_log
[function]
[call site]
02283
realloc
[call site]
02284
hts_log
[function]
[call site]
02285
kputuw
[function]
[call site]
02286
ks_resize
[function]
[call site]
02287
ks_resize
[function]
[call site]
02288
kputc
[function]
[call site]
02289
ks_resize
[function]
[call site]
02290
cram_add_substitution
[function]
[call site]
02291
cram_stats_add
[function]
[call site]
02292
cram_stats_add
[function]
[call site]
02293
cram_stats_add
[function]
[call site]
02294
block_append_char
[function]
[call site]
02295
block_grow
[function]
[call site]
02296
cram_add_feature
[function]
[call site]
02297
realloc
[call site]
02298
cram_stats_add
[function]
[call site]
02299
cram_stats_add
[function]
[call site]
02300
cram_stats_add
[function]
[call site]
02301
cram_add_bases
[function]
[call site]
02302
cram_add_feature
[function]
[call site]
02303
cram_add_base
[function]
[call site]
02304
cram_stats_add
[function]
[call site]
02305
cram_stats_add
[function]
[call site]
02306
block_append_char
[function]
[call site]
02307
cram_add_feature
[function]
[call site]
02308
cram_add_base
[function]
[call site]
02309
kputuw
[function]
[call site]
02310
kputc_
[function]
[call site]
02311
ks_resize
[function]
[call site]
02312
kputsn
[function]
[call site]
02313
ks_resize
[function]
[call site]
02314
cram_add_deletion
[function]
[call site]
02315
cram_stats_add
[function]
[call site]
02316
cram_add_feature
[function]
[call site]
02317
cram_add_skip
[function]
[call site]
02318
cram_stats_add
[function]
[call site]
02319
cram_add_feature
[function]
[call site]
02320
cram_add_insertion
[function]
[call site]
02321
cram_stats_add
[function]
[call site]
02322
block_append
[function]
[call site]
02323
block_grow
[function]
[call site]
02324
block_append_char
[function]
[call site]
02325
block_append_char
[function]
[call site]
02326
cram_add_feature
[function]
[call site]
02327
cram_add_quality
[function]
[call site]
02328
cram_stats_add
[function]
[call site]
02329
block_append_char
[function]
[call site]
02330
cram_add_feature
[function]
[call site]
02331
cram_add_softclip
[function]
[call site]
02332
block_append
[function]
[call site]
02333
block_append_char
[function]
[call site]
02334
block_append
[function]
[call site]
02335
block_append_char
[function]
[call site]
02336
block_append_char
[function]
[call site]
02337
cram_add_feature
[function]
[call site]
02338
cram_add_quality
[function]
[call site]
02339
cram_add_quality
[function]
[call site]
02340
cram_add_hardclip
[function]
[call site]
02341
cram_stats_add
[function]
[call site]
02342
cram_add_feature
[function]
[call site]
02343
cram_add_pad
[function]
[call site]
02344
cram_stats_add
[function]
[call site]
02345
cram_add_feature
[function]
[call site]
02346
hts_log
[function]
[call site]
02347
hts_log
[function]
[call site]
02348
cram_stats_add
[function]
[call site]
02349
kputuw
[function]
[call site]
02350
cram_stats_add
[function]
[call site]
02351
cram_encode_aux
[function]
[call site]
02352
bam_data_end
[function]
[call site]
02353
hts_log
[function]
[call site]
02354
sam_hrecs_find_rg
[function]
[call site]
02355
kh_get_m_s2i
[function]
[call site]
02356
block_append
[function]
[call site]
02357
hts_log
[function]
[call site]
02358
strncasecmp
[call site]
02359
hts_log
[function]
[call site]
02360
block_append
[function]
[call site]
02361
bam_aux2i_end
[function]
[call site]
02362
hts_log
[function]
[call site]
02363
block_append
[function]
[call site]
02364
block_append
[function]
[call site]
02365
kh_put_m_tagmap
[function]
[call site]
02366
kh_resize_m_tagmap
[function]
[call site]
02367
realloc
[call site]
02368
pthread_mutex_lock
[call site]
02369
kh_put_m_metrics
[function]
[call site]
02370
kh_resize_m_metrics
[function]
[call site]
02371
realloc
[call site]
02372
pthread_mutex_unlock
[call site]
02373
cram_new_metrics
[function]
[call site]
02374
kh_del_m_metrics
[function]
[call site]
02375
pthread_mutex_unlock
[call site]
02376
pthread_mutex_unlock
[call site]
02377
calloc
[call site]
02378
cram_encoder_init
[function]
[call site]
02379
cram_encoding2str
[function]
[call site]
02380
hts_log
[function]
[call site]
02381
cram_encoding2str
[function]
[call site]
02382
hts_log
[function]
[call site]
02383
abort
[call site]
02384
cram_stats_add
[function]
[call site]
02385
cram_stats_encoding
[function]
[call site]
02386
realloc
[call site]
02387
realloc
[call site]
02388
realloc
[call site]
02389
realloc
[call site]
02390
__assert_fail
[call site]
02391
cram_encoder_init
[function]
[call site]
02392
cram_stats_add
[function]
[call site]
02393
cram_stats_encoding
[function]
[call site]
02394
cram_encoder_init
[function]
[call site]
02395
cram_stats_add
[function]
[call site]
02396
cram_stats_encoding
[function]
[call site]
02397
cram_encoder_init
[function]
[call site]
02398
cram_encoder_init
[function]
[call site]
02399
hts_log
[function]
[call site]
02400
pthread_mutex_lock
[call site]
02401
pthread_mutex_unlock
[call site]
02402
cram_new_block
[function]
[call site]
02403
block_append_char
[function]
[call site]
02404
cram_new_block
[function]
[call site]
02405
block_append
[function]
[call site]
02406
cram_new_block
[function]
[call site]
02407
block_append
[function]
[call site]
02408
cram_new_block
[function]
[call site]
02409
block_append
[function]
[call site]
02410
cram_new_block
[function]
[call site]
02411
hts_log
[function]
[call site]
02412
cram_new_block
[function]
[call site]
02413
cram_new_block
[function]
[call site]
02414
hts_log
[function]
[call site]
02415
hts_log
[function]
[call site]
02416
block_append_char
[function]
[call site]
02417
kh_put_m_s2i
[function]
[call site]
02418
kh_resize_m_s2i
[function]
[call site]
02419
__ac_FNV1a_hash_string
[function]
[call site]
02420
string_ndup
[function]
[call site]
02421
cram_stats_add
[function]
[call site]
02422
sam_hrecs_find_rg
[function]
[call site]
02423
cram_stats_add
[function]
[call site]
02424
block_grow
[function]
[call site]
02425
block_grow
[function]
[call site]
02426
cram_stats_add
[function]
[call site]
02427
kh_put_m_s2i
[function]
[call site]
02428
string_ndup
[function]
[call site]
02429
cram_stats_add
[function]
[call site]
02430
cram_stats_add
[function]
[call site]
02431
cram_stats_del
[function]
[call site]
02432
__assert_fail
[call site]
02433
kh_get_m_i2i
[function]
[call site]
02434
kh_del_m_i2i
[function]
[call site]
02435
hts_log
[function]
[call site]
02436
hts_log
[function]
[call site]
02437
cram_stats_del
[function]
[call site]
02438
cram_stats_del
[function]
[call site]
02439
cram_stats_del
[function]
[call site]
02440
cram_stats_add
[function]
[call site]
02441
cram_stats_del
[function]
[call site]
02442
cram_stats_add
[function]
[call site]
02443
cram_stats_add
[function]
[call site]
02444
cram_stats_add
[function]
[call site]
02445
cram_stats_add
[function]
[call site]
02446
cram_stats_add
[function]
[call site]
02447
cram_stats_add
[function]
[call site]
02448
cram_stats_add
[function]
[call site]
02449
cram_stats_add
[function]
[call site]
02450
add_read_names
[function]
[call site]
02451
block_append
[function]
[call site]
02452
block_append
[function]
[call site]
02453
cram_stats_add
[function]
[call site]
02454
calloc
[call site]
02455
__assert_fail
[call site]
02456
cram_ref_decr
[function]
[call site]
02457
pthread_mutex_lock
[call site]
02458
pthread_mutex_unlock
[call site]
02459
cram_stats_encoding
[function]
[call site]
02460
pthread_mutex_lock
[call site]
02461
pthread_mutex_unlock
[call site]
02462
hts_log
[function]
[call site]
02463
hts_md5_init
[function]
[call site]
02464
hts_md5_update
[function]
[call site]
02465
hts_md5_final
[function]
[call site]
02466
hts_md5_destroy
[function]
[call site]
02467
cram_stats_encoding
[function]
[call site]
02468
cram_encoder_init
[function]
[call site]
02469
cram_stats_encoding
[function]
[call site]
02470
cram_encoder_init
[function]
[call site]
02471
cram_stats_encoding
[function]
[call site]
02472
cram_encoder_init
[function]
[call site]
02473
cram_encoder_init
[function]
[call site]
02474
cram_encoder_init
[function]
[call site]
02475
cram_stats_encoding
[function]
[call site]
02476
cram_encoder_init
[function]
[call site]
02477
cram_stats_encoding
[function]
[call site]
02478
cram_encoder_init
[function]
[call site]
02479
cram_stats_encoding
[function]
[call site]
02480
cram_encoder_init
[function]
[call site]
02481
cram_stats_encoding
[function]
[call site]
02482
cram_encoder_init
[function]
[call site]
02483
cram_stats_encoding
[function]
[call site]
02484
cram_encoder_init
[function]
[call site]
02485
cram_stats_encoding
[function]
[call site]
02486
cram_encoder_init
[function]
[call site]
02487
cram_stats_encoding
[function]
[call site]
02488
cram_encoder_init
[function]
[call site]
02489
cram_stats_encoding
[function]
[call site]
02490
cram_encoder_init
[function]
[call site]
02491
cram_stats_encoding
[function]
[call site]
02492
cram_encoder_init
[function]
[call site]
02493
cram_stats_encoding
[function]
[call site]
02494
cram_encoder_init
[function]
[call site]
02495
cram_stats_encoding
[function]
[call site]
02496
cram_encoder_init
[function]
[call site]
02497
cram_stats_encoding
[function]
[call site]
02498
cram_encoder_init
[function]
[call site]
02499
cram_stats_encoding
[function]
[call site]
02500
cram_encoder_init
[function]
[call site]
02501
cram_encoder_init
[function]
[call site]
02502
cram_stats_encoding
[function]
[call site]
02503
cram_encoder_init
[function]
[call site]
02504
cram_stats_encoding
[function]
[call site]
02505
cram_encoder_init
[function]
[call site]
02506
cram_stats_encoding
[function]
[call site]
02507
cram_encoder_init
[function]
[call site]
02508
cram_stats_encoding
[function]
[call site]
02509
cram_encoder_init
[function]
[call site]
02510
cram_stats_encoding
[function]
[call site]
02511
cram_encoder_init
[function]
[call site]
02512
cram_stats_encoding
[function]
[call site]
02513
cram_encoder_init
[function]
[call site]
02514
cram_stats_encoding
[function]
[call site]
02515
cram_encoder_init
[function]
[call site]
02516
cram_stats_encoding
[function]
[call site]
02517
cram_encoder_init
[function]
[call site]
02518
cram_encoder_init
[function]
[call site]
02519
cram_encoder_init
[function]
[call site]
02520
cram_encoder_init
[function]
[call site]
02521
cram_encoder_init
[function]
[call site]
02522
hts_log
[function]
[call site]
02523
cram_encode_slice
[function]
[call site]
02524
calloc
[call site]
02525
cram_new_block
[function]
[call site]
02526
cram_new_block
[function]
[call site]
02527
cram_new_block
[function]
[call site]
02528
block_append
[function]
[call site]
02529
cram_allocate_block
[function]
[call site]
02530
cram_new_block
[function]
[call site]
02531
cram_new_block
[function]
[call site]
02532
cram_allocate_block
[function]
[call site]
02533
cram_allocate_block
[function]
[call site]
02534
cram_allocate_block
[function]
[call site]
02535
cram_allocate_block
[function]
[call site]
02536
cram_allocate_block
[function]
[call site]
02537
cram_new_block
[function]
[call site]
02538
cram_allocate_block
[function]
[call site]
02539
cram_new_block
[function]
[call site]
02540
cram_encode_slice_read
[function]
[call site]
02541
hts_log
[function]
[call site]
02542
cram_free_block
[function]
[call site]
02543
cram_free_block
[function]
[call site]
02544
cram_free_block
[function]
[call site]
02545
cram_free_block
[function]
[call site]
02546
cram_compress_slice
[function]
[call site]
02547
cram_compress_block2
[function]
[call site]
02548
cram_compress_block3
[function]
[call site]
02549
pthread_mutex_lock
[call site]
02550
pthread_mutex_unlock
[call site]
02551
cram_compress_by_method
[function]
[call site]
02552
zlib_mem_deflate
[function]
[call site]
02553
deflateInit2_
[call site]
02554
hts_log
[function]
[call site]
02555
hts_log
[function]
[call site]
02556
deflate
[call site]
02557
hts_log
[function]
[call site]
02558
deflate
[call site]
02559
hts_log
[function]
[call site]
02560
deflateEnd
[call site]
02561
hts_log
[function]
[call site]
02562
BZ2_bzBuffToBuffCompress
[call site]
02563
fqz_compress
[function]
[call site]
02564
compress_block_fqz2f
[function]
[call site]
02565
fqz_pick_parameters
[function]
[call site]
02566
calloc
[call site]
02567
fqz_qual_stats
[function]
[call site]
02568
calloc
[call site]
02569
memcmp
[call site]
02570
fast_log
[function]
[call site]
02571
fast_log
[function]
[call site]
02572
fast_log
[function]
[call site]
02573
fast_log
[function]
[call site]
02574
fast_log
[function]
[call site]
02575
fast_log
[function]
[call site]
02576
fast_log
[function]
[call site]
02577
log
[call site]
02578
log
[call site]
02579
log
[call site]
02580
log
[call site]
02581
log
[call site]
02582
log
[call site]
02583
log
[call site]
02584
log
[call site]
02585
log
[call site]
02586
var_put_u32
[function]
[call site]
02587
var_put_u32_safe
[function]
[call site]
02588
fqz_store_parameters
[function]
[call site]
02589
store_array
[function]
[call site]
02590
fqz_store_parameters1
[function]
[call site]
02591
store_array
[function]
[call site]
02592
store_array
[function]
[call site]
02593
store_array
[function]
[call site]
02594
fqz_create_models
[function]
[call site]
02595
RC_SetOutput
[function]
[call site]
02596
RC_SetOutputEnd
[function]
[call site]
02597
RC_StartEncode
[function]
[call site]
02598
compress_new_read
[function]
[call site]
02599
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02600
RC_Encode
[function]
[call site]
02601
RC_ShiftLowCheck
[function]
[call site]
02602
SIMPLE_MODEL256_normalize
[function]
[call site]
02603
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02604
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02605
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02606
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02607
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02608
SIMPLE_MODEL2_normalize
[function]
[call site]
02609
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02610
memcmp
[call site]
02611
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02612
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02613
mm_prefetch
[function]
[call site]
02614
fqz_update_ctx
[function]
[call site]
02615
mm_prefetch
[function]
[call site]
02616
fqz_update_ctx
[function]
[call site]
02617
mm_prefetch
[function]
[call site]
02618
fqz_update_ctx
[function]
[call site]
02619
mm_prefetch
[function]
[call site]
02620
fqz_update_ctx
[function]
[call site]
02621
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02622
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02623
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02624
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02625
mm_prefetch
[function]
[call site]
02626
fqz_update_ctx
[function]
[call site]
02627
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02628
RC_FinishEncode
[function]
[call site]
02629
RC_ShiftLowCheck
[function]
[call site]
02630
RC_OutSize
[function]
[call site]
02631
fqz_destroy_models
[function]
[call site]
02632
fqz_free_parameters
[function]
[call site]
02633
lzma_mem_deflate
[function]
[call site]
02634
lzma_stream_buffer_bound
[call site]
02635
lzma_easy_buffer_encode
[call site]
02636
rans_compress
[function]
[call site]
02637
rans_compress_O1
[function]
[call site]
02638
rans_compress_O0
[function]
[call site]
02639
hist8
[function]
[call site]
02640
htscodecs_tls_calloc
[function]
[call site]
02641
htscodecs_tls_free
[function]
[call site]
02642
__assert_fail
[call site]
02643
RansEncSymbolInit
[function]
[call site]
02644
__assert_fail
[call site]
02645
__assert_fail
[call site]
02646
RansEncInit
[function]
[call site]
02647
RansEncInit
[function]
[call site]
02648
RansEncInit
[function]
[call site]
02649
RansEncInit
[function]
[call site]
02650
RansEncPutSymbol
[function]
[call site]
02651
__assert_fail
[call site]
02652
RansEncPutSymbol
[function]
[call site]
02653
RansEncPutSymbol
[function]
[call site]
02654
RansEncPutSymbol
[function]
[call site]
02655
RansEncPutSymbol
[function]
[call site]
02656
RansEncPutSymbol
[function]
[call site]
02657
RansEncPutSymbol
[function]
[call site]
02658
RansEncFlush
[function]
[call site]
02659
RansEncFlush
[function]
[call site]
02660
RansEncFlush
[function]
[call site]
02661
RansEncFlush
[function]
[call site]
02662
htscodecs_tls_alloc
[function]
[call site]
02663
hist1_4
[function]
[call site]
02664
htscodecs_tls_calloc
[function]
[call site]
02665
htscodecs_tls_free
[function]
[call site]
02666
RansEncSymbolInit
[function]
[call site]
02667
__assert_fail
[call site]
02668
RansEncInit
[function]
[call site]
02669
RansEncInit
[function]
[call site]
02670
RansEncInit
[function]
[call site]
02671
RansEncInit
[function]
[call site]
02672
RansEncPutSymbol
[function]
[call site]
02673
RansEncPutSymbol4
[function]
[call site]
02674
__assert_fail
[call site]
02675
__assert_fail
[call site]
02676
__assert_fail
[call site]
02677
__assert_fail
[call site]
02678
RansEncPutSymbol
[function]
[call site]
02679
RansEncPutSymbol
[function]
[call site]
02680
RansEncPutSymbol
[function]
[call site]
02681
RansEncPutSymbol
[function]
[call site]
02682
RansEncFlush
[function]
[call site]
02683
RansEncFlush
[function]
[call site]
02684
RansEncFlush
[function]
[call site]
02685
RansEncFlush
[function]
[call site]
02686
htscodecs_tls_free
[function]
[call site]
02687
rans_compress_O0
[function]
[call site]
02688
rans_compress_4x16
[function]
[call site]
02689
rans_compress_to_4x16
[function]
[call site]
02690
rans_compress_bound_4x16
[function]
[call site]
02691
var_put_u32
[function]
[call site]
02692
rans_compress_to_4x16
[function]
[call site]
02693
realloc
[call site]
02694
var_put_u32
[function]
[call site]
02695
var_put_u32
[function]
[call site]
02696
var_put_u32
[function]
[call site]
02697
hts_pack
[function]
[call site]
02698
var_put_u32
[function]
[call site]
02699
hts_rle_encode
[function]
[call site]
02700
rle_find_syms
[function]
[call site]
02701
var_put_u32
[function]
[call site]
02702
var_put_u32
[function]
[call site]
02703
var_put_u32
[function]
[call site]
02704
rans_enc_func
[function]
[call site]
02705
pthread_once
[call site]
02706
htscodecs_tls_cpu_init
[function]
[call site]
02707
strerror
[call site]
02708
fprintf
[call site]
02709
fprintf
[call site]
02710
var_put_u32
[function]
[call site]
02711
var_put_u32
[function]
[call site]
02712
var_put_u32
[function]
[call site]
02713
rans_enc_func
[function]
[call site]
02714
arith_compress_to
[function]
[call site]
02715
arith_compress_bound
[function]
[call site]
02716
var_put_u32
[function]
[call site]
02717
var_put_u32
[function]
[call site]
02718
arith_compress_to
[function]
[call site]
02719
arith_compress_to
[function]
[call site]
02720
var_put_u32
[function]
[call site]
02721
var_put_u32
[function]
[call site]
02722
hts_pack
[function]
[call site]
02723
var_put_u32
[function]
[call site]
02724
BZ2_bzBuffToBuffCompress
[call site]
02725
arith_compress_O0_RLE
[function]
[call site]
02726
arith_compress_bound
[function]
[call site]
02727
SIMPLE_MODEL256_init
[function]
[call site]
02728
htscodecs_tls_alloc
[function]
[call site]
02729
SIMPLE_MODEL258_init
[function]
[call site]
02730
RC_SetOutput
[function]
[call site]
02731
RC_SetOutputEnd
[function]
[call site]
02732
RC_StartEncode
[function]
[call site]
02733
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02734
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02735
SIMPLE_MODEL258_normalize
[function]
[call site]
02736
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02737
RC_FinishEncode
[function]
[call site]
02738
htscodecs_tls_free
[function]
[call site]
02739
RC_OutSize
[function]
[call site]
02740
htscodecs_tls_free
[function]
[call site]
02741
arith_compress_O1_RLE
[function]
[call site]
02742
arith_compress_bound
[function]
[call site]
02743
htscodecs_tls_alloc
[function]
[call site]
02744
SIMPLE_MODEL256_init
[function]
[call site]
02745
htscodecs_tls_alloc
[function]
[call site]
02746
htscodecs_tls_free
[function]
[call site]
02747
SIMPLE_MODEL258_init
[function]
[call site]
02748
RC_SetOutput
[function]
[call site]
02749
RC_SetOutputEnd
[function]
[call site]
02750
RC_StartEncode
[function]
[call site]
02751
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02752
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02753
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02754
RC_FinishEncode
[function]
[call site]
02755
htscodecs_tls_free
[function]
[call site]
02756
htscodecs_tls_free
[function]
[call site]
02757
RC_OutSize
[function]
[call site]
02758
htscodecs_tls_free
[function]
[call site]
02759
htscodecs_tls_free
[function]
[call site]
02760
arith_compress_O1
[function]
[call site]
02761
arith_compress_bound
[function]
[call site]
02762
htscodecs_tls_alloc
[function]
[call site]
02763
SIMPLE_MODEL256_init
[function]
[call site]
02764
RC_SetOutput
[function]
[call site]
02765
RC_SetOutputEnd
[function]
[call site]
02766
RC_StartEncode
[function]
[call site]
02767
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02768
RC_FinishEncode
[function]
[call site]
02769
htscodecs_tls_free
[function]
[call site]
02770
RC_OutSize
[function]
[call site]
02771
htscodecs_tls_free
[function]
[call site]
02772
arith_compress_O0
[function]
[call site]
02773
arith_compress_bound
[function]
[call site]
02774
SIMPLE_MODEL256_init
[function]
[call site]
02775
RC_SetOutput
[function]
[call site]
02776
RC_SetOutputEnd
[function]
[call site]
02777
RC_StartEncode
[function]
[call site]
02778
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02779
RC_FinishEncode
[function]
[call site]
02780
RC_OutSize
[function]
[call site]
02781
tok3_encode_names
[function]
[call site]
02782
create_context
[function]
[call site]
02783
build_trie
[function]
[call site]
02784
calloc
[call site]
02785
pool_create
[function]
[call site]
02786
pool_alloc
[function]
[call site]
02787
new_pool
[function]
[call site]
02788
free_context
[function]
[call site]
02789
free_context
[function]
[call site]
02790
encode_name
[function]
[call site]
02791
search_trie
[function]
[call site]
02792
__ctype_b_loc
[call site]
02793
__ctype_b_loc
[call site]
02794
__ctype_b_loc
[call site]
02795
__ctype_b_loc
[call site]
02796
__ctype_b_loc
[call site]
02797
calloc
[call site]
02798
__ctype_b_loc
[call site]
02799
strlen
[call site]
02800
encode_token_dup
[function]
[call site]
02801
encode_token_int
[function]
[call site]
02802
encode_token_type
[function]
[call site]
02803
descriptor_grow
[function]
[call site]
02804
realloc
[call site]
02805
descriptor_grow
[function]
[call site]
02806
encode_token_diff
[function]
[call site]
02807
encode_token_int
[function]
[call site]
02808
encode_token_char
[function]
[call site]
02809
encode_token_type
[function]
[call site]
02810
descriptor_grow
[function]
[call site]
02811
memcmp
[call site]
02812
encode_token_match
[function]
[call site]
02813
encode_token_type
[function]
[call site]
02814
encode_token_alpha
[function]
[call site]
02815
encode_token_type
[function]
[call site]
02816
descriptor_grow
[function]
[call site]
02817
encode_token_alpha
[function]
[call site]
02818
__ctype_b_loc
[call site]
02819
__ctype_b_loc
[call site]
02820
__ctype_b_loc
[call site]
02821
memcmp
[call site]
02822
encode_token_match
[function]
[call site]
02823
encode_token_alpha
[function]
[call site]
02824
encode_token_alpha
[function]
[call site]
02825
__ctype_b_loc
[call site]
02826
encode_token_match
[function]
[call site]
02827
encode_token_int1
[function]
[call site]
02828
encode_token_type
[function]
[call site]
02829
descriptor_grow
[function]
[call site]
02830
encode_token_int1_
[function]
[call site]
02831
descriptor_grow
[function]
[call site]
02832
encode_token_int
[function]
[call site]
02833
encode_token_int1_
[function]
[call site]
02834
encode_token_int
[function]
[call site]
02835
__ctype_b_loc
[call site]
02836
__ctype_b_loc
[call site]
02837
encode_token_match
[function]
[call site]
02838
encode_token_int1
[function]
[call site]
02839
encode_token_int
[function]
[call site]
02840
encode_token_int
[function]
[call site]
02841
encode_token_match
[function]
[call site]
02842
encode_token_char
[function]
[call site]
02843
encode_token_char
[function]
[call site]
02844
encode_token_end
[function]
[call site]
02845
encode_token_type
[function]
[call site]
02846
realloc
[call site]
02847
free_context
[function]
[call site]
02848
arith_compress_bound
[function]
[call site]
02849
free_context
[function]
[call site]
02850
compress
[function]
[call site]
02851
arith_encode
[function]
[call site]
02852
arith_compress_to
[function]
[call site]
02853
var_put_u32
[function]
[call site]
02854
rans_encode
[function]
[call site]
02855
rans_compress_to_4x16
[function]
[call site]
02856
var_put_u32
[function]
[call site]
02857
free_context
[function]
[call site]
02858
memcmp
[call site]
02859
free_context
[function]
[call site]
02860
free_context
[function]
[call site]
02861
pthread_mutex_lock
[call site]
02862
pthread_mutex_unlock
[call site]
02863
pthread_mutex_unlock
[call site]
02864
cram_compress_by_method
[function]
[call site]
02865
cram_block_method2str
[function]
[call site]
02866
hts_log
[function]
[call site]
02867
pthread_mutex_lock
[call site]
02868
pthread_mutex_unlock
[call site]
02869
cram_compress_block3
[function]
[call site]
02870
cram_compress_by_method
[function]
[call site]
02871
hts_log
[function]
[call site]
02872
cram_block_method2str
[function]
[call site]
02873
hts_log
[function]
[call site]
02874
pthread_mutex_lock
[call site]
02875
pthread_mutex_unlock
[call site]
02876
cram_compress_block2
[function]
[call site]
02877
cram_compress_block2
[function]
[call site]
02878
cram_compress_block2
[function]
[call site]
02879
cram_compress_block2
[function]
[call site]
02880
cram_compress_block2
[function]
[call site]
02881
cram_compress_block2
[function]
[call site]
02882
cram_compress_block2
[function]
[call site]
02883
cram_compress_block2
[function]
[call site]
02884
cram_compress_block2
[function]
[call site]
02885
cram_compress_block2
[function]
[call site]
02886
cram_compress_block2
[function]
[call site]
02887
cram_compress_block2
[function]
[call site]
02888
cram_compress_block2
[function]
[call site]
02889
cram_compress_block2
[function]
[call site]
02890
cram_compress_block2
[function]
[call site]
02891
realloc
[call site]
02892
cram_free_block
[function]
[call site]
02893
cram_encode_slice_header
[function]
[call site]
02894
cram_new_block
[function]
[call site]
02895
cram_free_block
[function]
[call site]
02896
cram_free_block
[function]
[call site]
02897
__assert_fail
[call site]
02898
cram_encode_compression_header
[function]
[call site]
02899
cram_new_block
[function]
[call site]
02900
cram_new_block
[function]
[call site]
02901
itf8_put_blk
[function]
[call site]
02902
itf8_put
[function]
[call site]
02903
block_append
[function]
[call site]
02904
itf8_put_blk
[function]
[call site]
02905
itf8_put_blk
[function]
[call site]
02906
itf8_put_blk
[function]
[call site]
02907
itf8_put_blk
[function]
[call site]
02908
itf8_put_blk
[function]
[call site]
02909
kh_destroy_map
[function]
[call site]
02910
kh_init_map
[function]
[call site]
02911
calloc
[call site]
02912
kh_put_map
[function]
[call site]
02913
kh_resize_map
[function]
[call site]
02914
realloc
[call site]
02915
__ac_FNV1a_hash_string
[function]
[call site]
02916
strcmp
[call site]
02917
kh_put_map
[function]
[call site]
02918
kh_put_map
[function]
[call site]
02919
kh_put_map
[function]
[call site]
02920
kh_put_map
[function]
[call site]
02921
kh_put_map
[function]
[call site]
02922
kh_put_map
[function]
[call site]
02923
kh_put_map
[function]
[call site]
02924
kh_put_map
[function]
[call site]
02925
block_append
[function]
[call site]
02926
block_append_char
[function]
[call site]
02927
sub_idx
[function]
[call site]
02928
sub_idx
[function]
[call site]
02929
sub_idx
[function]
[call site]
02930
sub_idx
[function]
[call site]
02931
sub_idx
[function]
[call site]
02932
sub_idx
[function]
[call site]
02933
sub_idx
[function]
[call site]
02934
sub_idx
[function]
[call site]
02935
sub_idx
[function]
[call site]
02936
sub_idx
[function]
[call site]
02937
sub_idx
[function]
[call site]
02938
sub_idx
[function]
[call site]
02939
sub_idx
[function]
[call site]
02940
sub_idx
[function]
[call site]
02941
sub_idx
[function]
[call site]
02942
sub_idx
[function]
[call site]
02943
sub_idx
[function]
[call site]
02944
sub_idx
[function]
[call site]
02945
sub_idx
[function]
[call site]
02946
sub_idx
[function]
[call site]
02947
block_append
[function]
[call site]
02948
block_append
[function]
[call site]
02949
hts_log
[function]
[call site]
02950
block_append
[function]
[call site]
02951
block_append
[function]
[call site]
02952
block_append
[function]
[call site]
02953
hts_log
[function]
[call site]
02954
cram_free_block
[function]
[call site]
02955
cram_ref_decr
[function]
[call site]
02956
cram_ref_decr
[function]
[call site]
02957
cram_flush_container2
[function]
[call site]
02958
htell
[function]
[call site]
02959
cram_write_container
[function]
[call site]
02960
itf8_put
[function]
[call site]
02961
crc32
[call site]
02962
hwrite
[function]
[call site]
02963
htell
[function]
[call site]
02964
cram_write_block
[function]
[call site]
02965
__assert_fail
[call site]
02966
hputc
[function]
[call site]
02967
hputc2
[function]
[call site]
02968
flush_buffer
[function]
[call site]
02969
hputc
[function]
[call site]
02970
hwrite
[function]
[call site]
02971
hwrite
[function]
[call site]
02972
hwrite
[function]
[call site]
02973
__assert_fail
[call site]
02974
crc32
[call site]
02975
crc32
[call site]
02976
crc32
[call site]
02977
int32_encode
[function]
[call site]
02978
hwrite
[function]
[call site]
02979
htell
[function]
[call site]
02980
cram_write_block
[function]
[call site]
02981
cram_write_block
[function]
[call site]
02982
htell
[function]
[call site]
02983
cram_index_slice
[function]
[call site]
02984
hts_log
[function]
[call site]
02985
cram_index_build_multiref
[function]
[call site]
02986
cram_decode_slice
[function]
[call site]
02987
cram_dependent_data_series
[function]
[call site]
02988
cram_uncompress_block
[function]
[call site]
02989
cram_uncompress_block
[function]
[call site]
02990
calloc
[call site]
02991
cram_codec_to_id
[function]
[call site]
02992
cram_codec_to_id
[function]
[call site]
02993
cram_codec_to_id
[function]
[call site]
02994
hts_log
[function]
[call site]
02995
cram_uncompress_block
[function]
[call site]
02996
cram_codec_to_id
[function]
[call site]
02997
cram_uncompress_block
[function]
[call site]
02998
cram_codec_to_id
[function]
[call site]
02999
cram_codec_to_id
[function]
[call site]
03000
block_resize_exact
[function]
[call site]
03001
block_resize_exact
[function]
[call site]
03002
block_resize_exact
[function]
[call site]
03003
strcmp
[call site]
03004
hts_log
[function]
[call site]
03005
cram_get_block_by_id
[function]
[call site]
03006
cram_uncompress_block
[function]
[call site]
03007
hts_log
[function]
[call site]
03008
cram_get_ref
[function]
[call site]
03009
hts_log
[function]
[call site]
03010
pthread_mutex_lock
[call site]
03011
pthread_mutex_lock
[call site]
03012
pthread_mutex_unlock
[call site]
03013
pthread_mutex_unlock
[call site]
03014
hts_log
[function]
[call site]
03015
memcmp
[call site]
03016
hts_log
[function]
[call site]
03017
hts_log
[function]
[call site]
03018
hts_md5_init
[function]
[call site]
03019
hts_md5_update
[function]
[call site]
03020
hts_md5_final
[function]
[call site]
03021
hts_md5_destroy
[function]
[call site]
03022
cram_get_block_by_id
[function]
[call site]
03023
hts_md5_init
[function]
[call site]
03024
hts_md5_update
[function]
[call site]
03025
hts_md5_final
[function]
[call site]
03026
hts_md5_destroy
[function]
[call site]
03027
memcmp
[call site]
03028
sam_hdr_tid2name
[function]
[call site]
03029
hts_log
[function]
[call site]
03030
md5_print
[function]
[call site]
03031
hts_log
[function]
[call site]
03032
md5_print
[function]
[call site]
03033
hts_log
[function]
[call site]
03034
sam_hdr_find_tag_id
[function]
[call site]
03035
sam_hdr_fill_hrecs
[function]
[call site]
03036
sam_hrecs_find_type_id
[function]
[call site]
03037
sam_hrecs_find_key
[function]
[call site]
03038
kputsn
[function]
[call site]
03039
hts_log
[function]
[call site]
03040
ks_free
[function]
[call site]
03041
ks_initialize
[function]
[call site]
03042
pthread_mutex_lock
[call site]
03043
pthread_mutex_lock
[call site]
03044
calloc
[call site]
03045
pthread_mutex_unlock
[call site]
03046
pthread_mutex_unlock
[call site]
03047
hts_log
[function]
[call site]
03048
pthread_mutex_lock
[call site]
03049
pthread_mutex_unlock
[call site]
03050
cram_get_ref
[function]
[call site]
03051
pthread_mutex_lock
[call site]
03052
pthread_mutex_unlock
[call site]
03053
pthread_mutex_lock
[call site]
03054
pthread_mutex_unlock
[call site]
03055
cram_ref_decr
[function]
[call site]
03056
pthread_mutex_lock
[call site]
03057
pthread_mutex_lock
[call site]
03058
pthread_mutex_unlock
[call site]
03059
pthread_mutex_unlock
[call site]
03060
hts_log
[function]
[call site]
03061
hts_log
[function]
[call site]
03062
pthread_mutex_lock
[call site]
03063
pthread_mutex_unlock
[call site]
03064
hts_log
[function]
[call site]
03065
cram_decode_tlen
[function]
[call site]
03066
cram_decode_tlen
[function]
[call site]
03067
cram_decode_tlen
[function]
[call site]
03068
cram_decode_aux_1_0
[function]
[call site]
03069
map_find
[function]
[call site]
03070
block_append
[function]
[call site]
03071
cram_decode_aux
[function]
[call site]
03072
strlen
[call site]
03073
sam_hdr_line_name
[function]
[call site]
03074
sam_hdr_fill_hrecs
[function]
[call site]
03075
hts_log
[function]
[call site]
03076
hts_log
[function]
[call site]
03077
hts_log
[function]
[call site]
03078
hts_log
[function]
[call site]
03079
strlen
[call site]
03080
block_append
[function]
[call site]
03081
block_append
[function]
[call site]
03082
block_append_char
[function]
[call site]
03083
block_append
[function]
[call site]
03084
map_find
[function]
[call site]
03085
block_append
[function]
[call site]
03086
aux_ele_size
[function]
[call site]
03087
hts_log
[function]
[call site]
03088
block_resize
[function]
[call site]
03089
block_resize
[function]
[call site]
03090
hts_log
[function]
[call site]
03091
cram_decode_seq
[function]
[call site]
03092
block_append
[function]
[call site]
03093
realloc
[call site]
03094
hts_log
[function]
[call site]
03095
hts_log
[function]
[call site]
03096
hts_log
[function]
[call site]
03097
memchr
[call site]
03098
add_md_char
[function]
[call site]
03099
block_append_uint
[function]
[call site]
03100
block_grow
[function]
[call site]
03101
append_uint32
[function]
[call site]
03102
block_append_char
[function]
[call site]
03103
block_append_uint
[function]
[call site]
03104
add_md_char
[function]
[call site]
03105
block_append_uint
[function]
[call site]
03106
block_append_char
[function]
[call site]
03107
block_append
[function]
[call site]
03108
block_append_char
[function]
[call site]
03109
block_append
[function]
[call site]
03110
block_append_uint
[function]
[call site]
03111
block_append_uint
[function]
[call site]
03112
block_append_uint
[function]
[call site]
03113
block_append_char
[function]
[call site]
03114
block_append_uint
[function]
[call site]
03115
block_append_char
[function]
[call site]
03116
hts_log
[function]
[call site]
03117
hts_log
[function]
[call site]
03118
memchr
[call site]
03119
add_md_char
[function]
[call site]
03120
realloc
[call site]
03121
block_append_uint
[function]
[call site]
03122
realloc
[call site]
03123
block_append_char
[function]
[call site]
03124
block_append
[function]
[call site]
03125
hts_log
[function]
[call site]
03126
pthread_mutex_lock
[call site]
03127
cram_ref_decr
[function]
[call site]
03128
cram_ref_decr
[function]
[call site]
03129
pthread_mutex_unlock
[call site]
03130
cram_decode_slice_xref
[function]
[call site]
03131
hts_log
[function]
[call site]
03132
cram_free_block
[function]
[call site]
03133
block_resize_exact
[function]
[call site]
03134
block_resize_exact
[function]
[call site]
03135
block_resize_exact
[function]
[call site]
03136
block_resize_exact
[function]
[call site]
03137
pthread_mutex_lock
[call site]
03138
cram_ref_decr
[function]
[call site]
03139
pthread_mutex_unlock
[call site]
03140
hts_log
[function]
[call site]
03141
snprintf
[call site]
03142
strlen
[call site]
03143
bgzf_write
[function]
[call site]
03144
hwrite
[function]
[call site]
03145
__assert_fail
[call site]
03146
lazy_flush
[function]
[call site]
03147
mt_queue
[function]
[call site]
03148
bgzf_flush
[function]
[call site]
03149
snprintf
[call site]
03150
strlen
[call site]
03151
bgzf_write
[function]
[call site]
03152
snprintf
[call site]
03153
strlen
[call site]
03154
bgzf_write
[function]
[call site]
03155
__errno_location
[call site]
03156
hts_tpool_dispatch2
[function]
[call site]
03157
hts_tpool_dispatch3
[function]
[call site]
03158
cram_flush_thread
[function]
[call site]
03159
cram_encode_container
[function]
[call site]
03160
hts_log
[function]
[call site]
03161
__errno_location
[call site]
03162
cram_flush_result
[function]
[call site]
03163
hts_tpool_next_result
[function]
[call site]
03164
pthread_mutex_lock
[call site]
03165
hts_tpool_next_result_locked
[function]
[call site]
03166
pthread_mutex_unlock
[call site]
03167
hts_tpool_result_data
[function]
[call site]
03168
hts_tpool_delete_result
[function]
[call site]
03169
cram_flush_container2
[function]
[call site]
03170
cram_free_slice
[function]
[call site]
03171
cram_free_slice
[function]
[call site]
03172
cram_free_container
[function]
[call site]
03173
hts_tpool_delete_result
[function]
[call site]
03174
cram_free_container
[function]
[call site]
03175
hts_usleep
[function]
[call site]
03176
cram_drain_rqueue
[function]
[call site]
03177
hts_tpool_process_flush
[function]
[call site]
03178
cram_flush_result
[function]
[call site]
03179
hts_tpool_process_destroy
[function]
[call site]
03180
pthread_mutex_destroy
[call site]
03181
pthread_mutex_destroy
[call site]
03182
pthread_mutex_destroy
[call site]
03183
pthread_mutex_destroy
[call site]
03184
cram_write_eof_block
[function]
[call site]
03185
cram_encode_compression_header
[function]
[call site]
03186
cram_write_container
[function]
[call site]
03187
cram_write_block
[function]
[call site]
03188
cram_close
[function]
[call site]
03189
free_bam_list
[function]
[call site]
03190
hclose
[function]
[call site]
03191
cram_free_file_def
[function]
[call site]
03192
sam_hdr_destroy
[function]
[call site]
03193
cram_free_container
[function]
[call site]
03194
cram_free_container
[function]
[call site]
03195
refs_free
[function]
[call site]
03196
kh_destroy_m_metrics
[function]
[call site]
03197
cram_index_free
[function]
[call site]
03198
cram_index_free_recurse
[function]
[call site]
03199
cram_index_free_recurse
[function]
[call site]
03200
hts_tpool_destroy
[function]
[call site]
03201
bgzf_close
[function]
[call site]
03202
cram_free_block
[function]
[call site]
03203
kh_destroy_map
[function]
[call site]
03204
cram_free_block
[function]
[call site]
03205
sam_state_destroy
[function]
[call site]
03206
fastq_state_destroy
[function]
[call site]
03207
kh_destroy_tag
[function]
[call site]
03208
ks_free
[function]
[call site]
03209
ks_initialize
[function]
[call site]
03210
ks_free
[function]
[call site]
03211
ks_free
[function]
[call site]
03212
regfree
[call site]
03213
bgzf_close
[function]
[call site]
03214
hclose
[function]
[call site]
03215
hts_idx_close_otf_fp
[function]
[call site]
03216
need_idx_ugly_delay_hack
[function]
[call site]
03217
idx_write_uint64
[function]
[call site]
03218
ed_is_big
[function]
[call site]
03219
ed_swap_8
[function]
[call site]
03220
bgzf_write
[function]
[call site]
03221
bgzf_close
[function]
[call site]
03222
__errno_location
[call site]
03223
sam_hdr_destroy
[function]
[call site]
03224
hts_idx_destroy
[function]
[call site]
03225
cram_index_free
[function]
[call site]
03226
kh_destroy_bin
[function]
[call site]
03227
hts_filter_free
[function]
[call site]
03228
__errno_location
[call site]
03229
view_sam
[function]
[call site]
03230
abort
[call site]
03231
hopen
[function]
[call site]
03232
hts_hopen
[function]
[call site]
03233
hclose
[function]
[call site]
03234
abort
[call site]
03235
hts_open
[function]
[call site]
03236
hts_open_format
[function]
[call site]
03237
strncpy
[call site]
03238
strchr
[call site]
03239
strchr
[call site]
03240
strchr
[call site]
03241
strstr
[call site]
03242
strdup
[call site]
03243
hopen
[function]
[call site]
03244
hts_hopen
[function]
[call site]
03245
hts_opt_apply
[function]
[call site]
03246
__errno_location
[call site]
03247
__errno_location
[call site]
03248
__errno_location
[call site]
03249
__errno_location
[call site]
03250
strerror
[call site]
03251
hts_log
[function]
[call site]
03252
hclose_abruptly
[function]
[call site]
03253
abort
[call site]
03254
sam_hdr_read
[function]
[call site]
03255
__errno_location
[call site]
03256
bam_hdr_read
[function]
[call site]
03257
bgzf_check_EOF
[function]
[call site]
03258
pthread_mutex_lock
[call site]
03259
pthread_cond_signal
[call site]
03260
hts_tpool_wake_dispatch
[function]
[call site]
03261
pthread_mutex_unlock
[call site]
03262
pthread_cond_wait
[call site]
03263
pthread_cond_signal
[call site]
03264
abort
[call site]
03265
pthread_mutex_unlock
[call site]
03266
bgzf_check_EOF_common
[function]
[call site]
03267
htell
[function]
[call site]
03268
hseek
[function]
[call site]
03269
__errno_location
[call site]
03270
hclearerr
[function]
[call site]
03271
__errno_location
[call site]
03272
hclearerr
[function]
[call site]
03273
hread
[function]
[call site]
03274
hseek
[function]
[call site]
03275
memcmp
[call site]
03276
perror
[call site]
03277
hts_log
[function]
[call site]
03278
bgzf_read
[function]
[call site]
03279
memcmp
[call site]
03280
hts_log
[function]
[call site]
03281
sam_hdr_init
[function]
[call site]
03282
bgzf_read
[function]
[call site]
03283
le_to_u32
[function]
[call site]
03284
bgzf_read
[function]
[call site]
03285
bgzf_read
[function]
[call site]
03286
ed_swap_4p
[function]
[call site]
03287
ed_swap_4
[function]
[call site]
03288
calloc
[call site]
03289
calloc
[call site]
03290
bgzf_read
[function]
[call site]
03291
ed_swap_4p
[function]
[call site]
03292
bgzf_read
[function]
[call site]
03293
realloc
[call site]
03294
bgzf_read
[function]
[call site]
03295
ed_swap_4p
[function]
[call site]
03296
hts_log
[function]
[call site]
03297
hts_log
[function]
[call site]
03298
hts_log
[function]
[call site]
03299
sam_hdr_destroy
[function]
[call site]
03300
sam_hdr_sanitise
[function]
[call site]
03301
hts_log
[function]
[call site]
03302
sam_hdr_destroy
[function]
[call site]
03303
hts_log
[function]
[call site]
03304
hts_log
[function]
[call site]
03305
hts_log
[function]
[call site]
03306
sam_hdr_destroy
[function]
[call site]
03307
realloc
[call site]
03308
sam_hdr_destroy
[function]
[call site]
03309
sam_hdr_dup
[function]
[call site]
03310
sam_hdr_init
[function]
[call site]
03311
calloc
[call site]
03312
calloc
[call site]
03313
strdup
[call site]
03314
sam_hdr_dup_sdict
[function]
[call site]
03315
kh_init_s2i
[function]
[call site]
03316
kh_get_s2i
[function]
[call site]
03317
kh_put_s2i
[function]
[call site]
03318
kh_destroy_s2i
[function]
[call site]
03319
sam_hrecs_rebuild_text
[function]
[call site]
03320
kputsn
[function]
[call site]
03321
sam_hrecs_rebuild_lines
[function]
[call site]
03322
kputsn
[function]
[call site]
03323
build_header_line
[function]
[call site]
03324
kputc_
[function]
[call site]
03325
kputsn
[function]
[call site]
03326
kputc_
[function]
[call site]
03327
kputsn
[function]
[call site]
03328
kputc
[function]
[call site]
03329
ks_release
[function]
[call site]
03330
ks_release
[function]
[call site]
03331
sam_hdr_update_target_arrays
[function]
[call site]
03332
sam_hdr_destroy
[function]
[call site]
03333
sam_hdr_sanitise
[function]
[call site]
03334
sam_hdr_create
[function]
[call site]
03335
sam_hdr_init
[function]
[call site]
03336
sam_hdr_build_from_sam_file
[function]
[call site]
03337
sam_hrecs_new
[function]
[call site]
03338
hts_getline
[function]
[call site]
03339
hts_log
[function]
[call site]
03340
abort
[call site]
03341
kgetline2
[function]
[call site]
03342
ks_resize
[function]
[call site]
03343
hgetln
[function]
[call site]
03344
herrno
[function]
[call site]
03345
__errno_location
[call site]
03346
bgzf_getline
[function]
[call site]
03347
bgzf_read_block
[function]
[call site]
03348
memchr
[call site]
03349
ks_expand
[function]
[call site]
03350
bgzf_htell
[function]
[call site]
03351
abort
[call site]
03352
isalpha_c
[function]
[call site]
03353
sam_hrecs_error
[function]
[call site]
03354
strncmp
[call site]
03355
kputc
[function]
[call site]
03356
valid_sam_header_type
[function]
[call site]
03357
hts_log
[function]
[call site]
03358
warn_if_known_stderr
[function]
[call site]
03359
sam_hrecs_parse_single_line
[function]
[call site]
03360
TYPEKEY
[function]
[call site]
03361
kputsn
[function]
[call site]
03362
kputc
[function]
[call site]
03363
bgzf_peek
[function]
[call site]
03364
bgzf_read_block
[function]
[call site]
03365
hts_log
[function]
[call site]
03366
hpeek
[function]
[call site]
03367
strstr
[call site]
03368
hopen
[function]
[call site]
03369
kgetline
[function]
[call site]
03370
strlen
[call site]
03371
hgets
[function]
[call site]
03372
strchr
[call site]
03373
strtoll
[call site]
03374
kputs
[function]
[call site]
03375
kputsn
[function]
[call site]
03376
kputs
[function]
[call site]
03377
kputll
[function]
[call site]
03378
kputc
[function]
[call site]
03379
sam_hrecs_parse_single_line
[function]
[call site]
03380
ks_free
[function]
[call site]
03381
hclose
[function]
[call site]
03382
hts_log
[function]
[call site]
03383
kh_grow_to_fit_m_s2i
[function]
[call site]
03384
realloc
[call site]
03385
sam_hrecs_update_hashes
[function]
[call site]
03386
kputsn
[function]
[call site]
03387
ks_release
[function]
[call site]
03388
sam_hdr_update_target_arrays
[function]
[call site]
03389
ks_free
[function]
[call site]
03390
sam_hdr_destroy
[function]
[call site]
03391
sam_hdr_destroy
[function]
[call site]
03392
sam_hdr_sanitise
[function]
[call site]
03393
sam_hdr_init
[function]
[call site]
03394
__errno_location
[call site]
03395
__errno_location
[call site]
03396
sam_hdr_incr_ref
[function]
[call site]
03397
hts_close_or_abort
[function]
[call site]
03398
hts_close
[function]
[call site]
03399
abort
[call site]
03400
hts_close
[function]
[call site]
03401
hts_close
[function]
[call site]
03402
sam_hdr_count_lines
[function]
[call site]
03403
sam_hdr_fill_hrecs
[function]
[call site]
03404
sam_hrecs_find_type_id
[function]
[call site]
03405
sam_hdr_write
[function]
[call site]
03406
__errno_location
[call site]
03407
bam_hdr_write
[function]
[call site]
03408
sam_hrecs_rebuild_text
[function]
[call site]
03409
hts_log
[function]
[call site]
03410
hts_log
[function]
[call site]
03411
hts_log
[function]
[call site]
03412
hts_log
[function]
[call site]
03413
hts_log
[function]
[call site]
03414
hts_log
[function]
[call site]
03415
bgzf_write
[function]
[call site]
03416
ed_swap_4
[function]
[call site]
03417
bgzf_write
[function]
[call site]
03418
bgzf_write
[function]
[call site]
03419
ed_swap_4
[function]
[call site]
03420
bgzf_write
[function]
[call site]
03421
bgzf_write
[function]
[call site]
03422
bgzf_write
[function]
[call site]
03423
bgzf_write
[function]
[call site]
03424
strlen
[call site]
03425
ed_swap_4
[function]
[call site]
03426
bgzf_write
[function]
[call site]
03427
bgzf_write
[function]
[call site]
03428
bgzf_write
[function]
[call site]
03429
ed_swap_4
[function]
[call site]
03430
bgzf_write
[function]
[call site]
03431
bgzf_write
[function]
[call site]
03432
bgzf_flush
[function]
[call site]
03433
cram_set_header2
[function]
[call site]
03434
sam_hdr_destroy
[function]
[call site]
03435
sam_hdr_dup
[function]
[call site]
03436
refs_from_header
[function]
[call site]
03437
cram_load_reference
[function]
[call site]
03438
cram_write_SAM_hdr
[function]
[call site]
03439
cram_write_file_def
[function]
[call site]
03440
hwrite
[function]
[call site]
03441
sam_hrecs_find_rg
[function]
[call site]
03442
sam_hdr_add_line
[function]
[call site]
03443
sam_hdr_fill_hrecs
[function]
[call site]
03444
sam_hrecs_vadd
[function]
[call site]
03445
rebuild_target_arrays
[function]
[call site]
03446
redact_header_text
[function]
[call site]
03447
refs_from_header
[function]
[call site]
03448
refs2id
[function]
[call site]
03449
sam_hrecs_find_type_id
[function]
[call site]
03450
sam_hrecs_find_key
[function]
[call site]
03451
cram_get_ref
[function]
[call site]
03452
hts_log
[function]
[call site]
03453
hts_log
[function]
[call site]
03454
hts_log
[function]
[call site]
03455
pthread_mutex_lock
[call site]
03456
pthread_mutex_unlock
[call site]
03457
hts_md5_init
[function]
[call site]
03458
hts_md5_update
[function]
[call site]
03459
hts_md5_final
[function]
[call site]
03460
hts_md5_destroy
[function]
[call site]
03461
cram_ref_decr
[function]
[call site]
03462
hts_md5_hex
[function]
[call site]
03463
sam_hdr_update_line
[function]
[call site]
03464
sam_hdr_fill_hrecs
[function]
[call site]
03465
sam_hrecs_find_type_id
[function]
[call site]
03466
check_for_name_update
[function]
[call site]
03467
TYPEKEY
[function]
[call site]
03468
TYPEKEY
[function]
[call site]
03469
TYPEKEY
[function]
[call site]
03470
sam_hrecs_find_key
[function]
[call site]
03471
__assert_fail
[call site]
03472
strcmp
[call site]
03473
strcmp
[call site]
03474
kh_get_m_s2i
[function]
[call site]
03475
hts_log
[function]
[call site]
03476
TYPEKEY
[function]
[call site]
03477
hts_log
[function]
[call site]
03478
sam_hrecs_vupdate
[function]
[call site]
03479
kh_get_m_s2i
[function]
[call site]
03480
sam_hrecs_find_key
[function]
[call site]
03481
__assert_fail
[call site]
03482
__assert_fail
[call site]
03483
__assert_fail
[call site]
03484
kh_del_m_s2i
[function]
[call site]
03485
kh_put_m_s2i
[function]
[call site]
03486
hts_log
[function]
[call site]
03487
TYPEKEY
[function]
[call site]
03488
sam_hrecs_update_hashes
[function]
[call site]
03489
rebuild_target_arrays
[function]
[call site]
03490
redact_header_text
[function]
[call site]
03491
full_path
[function]
[call site]
03492
strlen
[call site]
03493
hisremote
[function]
[call site]
03494
hts_log
[function]
[call site]
03495
strncpy
[call site]
03496
toupper_c
[function]
[call site]
03497
strncpy
[call site]
03498
getcwd
[call site]
03499
strlen
[call site]
03500
strncpy
[call site]
03501
snprintf
[call site]
03502
sam_hdr_update_line
[function]
[call site]
03503
sam_hdr_length
[function]
[call site]
03504
sam_hdr_rebuild
[function]
[call site]
03505
rebuild_target_arrays
[function]
[call site]
03506
hts_log
[function]
[call site]
03507
sam_hdr_link_pg
[function]
[call site]
03508
sam_hdr_fill_hrecs
[function]
[call site]
03509
realloc
[call site]
03510
calloc
[call site]
03511
__assert_fail
[call site]
03512
kh_get_m_s2i
[function]
[call site]
03513
hts_log
[function]
[call site]
03514
hts_log
[function]
[call site]
03515
redact_header_text
[function]
[call site]
03516
hts_log
[function]
[call site]
03517
sam_hrecs_rebuild_text
[function]
[call site]
03518
ks_free
[function]
[call site]
03519
hts_log
[function]
[call site]
03520
ks_len
[function]
[call site]
03521
ks_release
[function]
[call site]
03522
hts_log
[function]
[call site]
03523
int32_encode
[function]
[call site]
03524
sam_hdr_str
[function]
[call site]
03525
sam_hdr_rebuild
[function]
[call site]
03526
hwrite
[function]
[call site]
03527
cram_new_block
[function]
[call site]
03528
cram_new_container
[function]
[call site]
03529
calloc
[call site]
03530
calloc
[call site]
03531
cram_new_compression_header
[function]
[call site]
03532
calloc
[call site]
03533
cram_new_block
[function]
[call site]
03534
kh_init_m_s2i
[function]
[call site]
03535
cram_free_block
[function]
[call site]
03536
string_pool_create
[function]
[call site]
03537
kh_destroy_m_s2i
[function]
[call site]
03538
cram_free_block
[function]
[call site]
03539
cram_stats_create
[function]
[call site]
03540
calloc
[call site]
03541
kh_init_m_tagmap
[function]
[call site]
03542
calloc
[call site]
03543
cram_free_block
[function]
[call site]
03544
cram_free_container
[function]
[call site]
03545
int32_put_blk
[function]
[call site]
03546
block_append
[function]
[call site]
03547
sam_hdr_str
[function]
[call site]
03548
block_append
[function]
[call site]
03549
cram_compress_block
[function]
[call site]
03550
cram_compress_block2
[function]
[call site]
03551
cram_free_block
[function]
[call site]
03552
cram_free_container
[function]
[call site]
03553
calloc
[call site]
03554
cram_free_block
[function]
[call site]
03555
cram_free_container
[function]
[call site]
03556
block_append
[function]
[call site]
03557
cram_write_container
[function]
[call site]
03558
cram_free_block
[function]
[call site]
03559
cram_free_container
[function]
[call site]
03560
cram_write_block
[function]
[call site]
03561
cram_free_block
[function]
[call site]
03562
cram_free_container
[function]
[call site]
03563
block_resize
[function]
[call site]
03564
cram_write_block
[function]
[call site]
03565
cram_free_block
[function]
[call site]
03566
cram_free_container
[function]
[call site]
03567
cram_free_block
[function]
[call site]
03568
cram_free_container
[function]
[call site]
03569
hflush
[function]
[call site]
03570
sam_hrecs_rebuild_text
[function]
[call site]
03571
strstr
[call site]
03572
bgzf_write
[function]
[call site]
03573
hwrite
[function]
[call site]
03574
kputsn
[function]
[call site]
03575
kputs
[function]
[call site]
03576
kputsn
[function]
[call site]
03577
kputw
[function]
[call site]
03578
kputc
[function]
[call site]
03579
bgzf_write
[function]
[call site]
03580
hwrite
[function]
[call site]
03581
bgzf_flush
[function]
[call site]
03582
hflush
[function]
[call site]
03583
__errno_location
[call site]
03584
sam_hdr_dup
[function]
[call site]
03585
sam_hdr_destroy
[function]
[call site]
03586
bam_init1
[function]
[call site]
03587
sam_read1
[function]
[call site]
03588
sam_read1_bam
[function]
[call site]
03589
bam_read1
[function]
[call site]
03590
bgzf_read_small
[function]
[call site]
03591
bgzf_read
[function]
[call site]
03592
ed_swap_4p
[function]
[call site]
03593
bgzf_read
[function]
[call site]
03594
le_to_u32
[function]
[call site]
03595
le_to_i32
[function]
[call site]
03596
le_to_u32
[function]
[call site]
03597
le_to_u32
[function]
[call site]
03598
le_to_u32
[function]
[call site]
03599
le_to_i32
[function]
[call site]
03600
le_to_i32
[function]
[call site]
03601
realloc_bam_data
[function]
[call site]
03602
sam_realloc_bam_data
[function]
[call site]
03603
__errno_location
[call site]
03604
__errno_location
[call site]
03605
bam_get_mempolicy
[function]
[call site]
03606
realloc
[call site]
03607
bam_get_mempolicy
[function]
[call site]
03608
bam_set_mempolicy
[function]
[call site]
03609
bgzf_read_small
[function]
[call site]
03610
fixup_missing_qname_nul
[function]
[call site]
03611
realloc_bam_data
[function]
[call site]
03612
bgzf_read_small
[function]
[call site]
03613
swap_data
[function]
[call site]
03614
ed_swap_4p
[function]
[call site]
03615
bam_tag2cigar
[function]
[call site]
03616
bam_aux_get
[function]
[call site]
03617
__errno_location
[call site]
03618
__errno_location
[call site]
03619
__errno_location
[call site]
03620
le_to_u32
[function]
[call site]
03621
possibly_expand_bam_data
[function]
[call site]
03622
__errno_location
[call site]
03623
sam_realloc_bam_data
[function]
[call site]
03624
bam_endpos
[function]
[call site]
03625
bam_cigar2rlen
[function]
[call site]
03626
hts_reg2bin
[function]
[call site]
03627
hts_log
[function]
[call site]
03628
bam_cigar2rqlens
[function]
[call site]
03629
hts_reg2bin
[function]
[call site]
03630
hts_log
[function]
[call site]
03631
__errno_location
[call site]
03632
sam_read1_cram
[function]
[call site]
03633
cram_get_bam_seq
[function]
[call site]
03634
cram_get_seq
[function]
[call site]
03635
cram_next_slice
[function]
[call site]
03636
cram_first_slice
[function]
[call site]
03637
cram_free_container
[function]
[call site]
03638
cram_read_container
[function]
[call site]
03639
cram_seek
[function]
[call site]
03640
cram_free_container
[function]
[call site]
03641
cram_read_container
[function]
[call site]
03642
cram_read_block
[function]
[call site]
03643
cram_decode_compression_header
[function]
[call site]
03644
calloc
[call site]
03645
cram_uncompress_block
[function]
[call site]
03646
kh_init_map
[function]
[call site]
03647
cram_free_compression_header
[function]
[call site]
03648
cram_free_compression_header
[function]
[call site]
03649
kh_put_map
[function]
[call site]
03650
cram_free_compression_header
[function]
[call site]
03651
kh_put_map
[function]
[call site]
03652
cram_free_compression_header
[function]
[call site]
03653
kh_put_map
[function]
[call site]
03654
cram_free_compression_header
[function]
[call site]
03655
kh_put_map
[function]
[call site]
03656
cram_free_compression_header
[function]
[call site]
03657
cram_free_compression_header
[function]
[call site]
03658
kh_put_map
[function]
[call site]
03659
cram_free_compression_header
[function]
[call site]
03660
cram_decode_TD
[function]
[call site]
03661
cram_new_block
[function]
[call site]
03662
hts_log
[function]
[call site]
03663
cram_free_block
[function]
[call site]
03664
cram_free_block
[function]
[call site]
03665
cram_free_block
[function]
[call site]
03666
block_append
[function]
[call site]
03667
block_append_char
[function]
[call site]
03668
calloc
[call site]
03669
cram_free_block
[function]
[call site]
03670
cram_free_block
[function]
[call site]
03671
cram_free_compression_header
[function]
[call site]
03672
kh_put_map
[function]
[call site]
03673
cram_free_compression_header
[function]
[call site]
03674
hts_log
[function]
[call site]
03675
cram_free_compression_header
[function]
[call site]
03676
cram_free_compression_header
[function]
[call site]
03677
cram_free_compression_header
[function]
[call site]
03678
hts_log
[function]
[call site]
03679
hts_log
[function]
[call site]
03680
cram_decoder_init
[function]
[call site]
03681
cram_encoding2str
[function]
[call site]
03682
hts_log
[function]
[call site]
03683
cram_free_compression_header
[function]
[call site]
03684
cram_free_compression_header
[function]
[call site]
03685
cram_free_compression_header
[function]
[call site]
03686
cram_free_compression_header
[function]
[call site]
03687
cram_decoder_init
[function]
[call site]
03688
cram_free_compression_header
[function]
[call site]
03689
cram_free_compression_header
[function]
[call site]
03690
sam_hrecs_sort_order
[function]
[call site]
03691
TYPEKEY
[function]
[call site]
03692
kh_get_sam_hrecs_t
[function]
[call site]
03693
strcmp
[call site]
03694
strcmp
[call site]
03695
strcmp
[call site]
03696
strcmp
[call site]
03697
hts_log
[function]
[call site]
03698
pthread_mutex_lock
[call site]
03699
pthread_mutex_unlock
[call site]
03700
cram_free_slice
[function]
[call site]
03701
cram_free_container
[function]
[call site]
03702
cram_read_container
[function]
[call site]
03703
cram_free_container
[function]
[call site]
03704
cram_free_container
[function]
[call site]
03705
cram_free_container
[function]
[call site]
03706
cram_free_container
[function]
[call site]
03707
hseek
[function]
[call site]
03708
cram_read_block
[function]
[call site]
03709
cram_decode_compression_header
[function]
[call site]
03710
sam_hrecs_sort_order
[function]
[call site]
03711
pthread_mutex_lock
[call site]
03712
pthread_mutex_unlock
[call site]
03713
cram_free_container
[function]
[call site]
03714
cram_read_slice
[function]
[call site]
03715
cram_read_block
[function]
[call site]
03716
calloc
[call site]
03717
cram_decode_slice_header
[function]
[call site]
03718
cram_uncompress_block
[function]
[call site]
03719
calloc
[call site]
03720
hts_log
[function]
[call site]
03721
cram_content_type2str
[function]
[call site]
03722
hts_log
[function]
[call site]
03723
hts_log
[function]
[call site]
03724
calloc
[call site]
03725
cram_read_block
[function]
[call site]
03726
calloc
[call site]
03727
cram_new_block
[function]
[call site]
03728
cram_new_block
[function]
[call site]
03729
cram_new_block
[function]
[call site]
03730
cram_new_block
[function]
[call site]
03731
cram_new_block
[function]
[call site]
03732
cram_new_block
[function]
[call site]
03733
cram_free_block
[function]
[call site]
03734
cram_free_slice
[function]
[call site]
03735
cram_free_slice
[function]
[call site]
03736
cram_free_slice
[function]
[call site]
03737
cram_free_slice
[function]
[call site]
03738
cram_decode_slice_mt
[function]
[call site]
03739
cram_decode_slice
[function]
[call site]
03740
hts_tpool_process_sz
[function]
[call site]
03741
pthread_mutex_lock
[call site]
03742
pthread_mutex_unlock
[call site]
03743
__errno_location
[call site]
03744
__errno_location
[call site]
03745
hts_tpool_dispatch2
[function]
[call site]
03746
cram_decode_slice_thread
[function]
[call site]
03747
cram_decode_slice
[function]
[call site]
03748
__errno_location
[call site]
03749
__errno_location
[call site]
03750
hts_log
[function]
[call site]
03751
cram_free_slice
[function]
[call site]
03752
hts_tpool_process_len
[function]
[call site]
03753
pthread_mutex_lock
[call site]
03754
pthread_mutex_unlock
[call site]
03755
hts_tpool_process_qsize
[function]
[call site]
03756
hts_tpool_process_empty
[function]
[call site]
03757
hts_tpool_next_result_wait
[function]
[call site]
03758
hts_tpool_result_data
[function]
[call site]
03759
hts_log
[function]
[call site]
03760
hts_tpool_result_data
[function]
[call site]
03761
hts_log
[function]
[call site]
03762
hts_tpool_delete_result
[function]
[call site]
03763
hts_tpool_delete_result
[function]
[call site]
03764
cram_free_slice
[function]
[call site]
03765
cram_free_slice
[function]
[call site]
03766
cram_to_bam
[function]
[call site]
03767
strlen
[call site]
03768
append_uint64
[function]
[call site]
03769
append_uint32
[function]
[call site]
03770
append_uint32
[function]
[call site]
03771
append_sub32
[function]
[call site]
03772
append_uint32
[function]
[call site]
03773
append_sub32
[function]
[call site]
03774
append_uint64
[function]
[call site]
03775
bam_set1
[function]
[call site]
03776
bam_cigar2rqlens
[function]
[call site]
03777
hts_log
[function]
[call site]
03778
__errno_location
[call site]
03779
hts_log
[function]
[call site]
03780
__errno_location
[call site]
03781
hts_log
[function]
[call site]
03782
__errno_location
[call site]
03783
hts_log
[function]
[call site]
03784
__errno_location
[call site]
03785
subtract_check_underflow
[function]
[call site]
03786
subtract_check_underflow
[function]
[call site]
03787
subtract_check_underflow
[function]
[call site]
03788
subtract_check_underflow
[function]
[call site]
03789
subtract_check_underflow
[function]
[call site]
03790
hts_log
[function]
[call site]
03791
__errno_location
[call site]
03792
realloc_bam_data
[function]
[call site]
03793
hts_reg2bin
[function]
[call site]
03794
strncpy
[call site]
03795
cram_eof
[function]
[call site]
03796
bam_tag2cigar
[function]
[call site]
03797
sam_read1_sam
[function]
[call site]
03798
sam_parse1
[function]
[call site]
03799
strchr
[call site]
03800
hts_log
[function]
[call site]
03801
hts_log
[function]
[call site]
03802
possibly_expand_bam_data
[function]
[call site]
03803
parse_sam_flag
[function]
[call site]
03804
hts_str2uint
[function]
[call site]
03805
strtoul
[call site]
03806
strchr
[call site]
03807
strcmp
[call site]
03808
hts_log
[function]
[call site]
03809
bam_name2id
[function]
[call site]
03810
sam_hdr_name2tid
[function]
[call site]
03811
sam_hdr_fill_hrecs
[function]
[call site]
03812
kh_get_m_s2i
[function]
[call site]
03813
hts_log
[function]
[call site]
03814
hts_strprint
[function]
[call site]
03815
isprint_c
[function]
[call site]
03816
__ctype_b_loc
[call site]
03817
strcpy
[call site]
03818
snprintf
[call site]
03819
hts_log
[function]
[call site]
03820
hts_str2uint
[function]
[call site]
03821
hts_log
[function]
[call site]
03822
hts_str2uint
[function]
[call site]
03823
bam_parse_cigar
[function]
[call site]
03824
hts_log
[function]
[call site]
03825
read_ncigar
[function]
[call site]
03826
isdigit_c
[function]
[call site]
03827
hts_log
[function]
[call site]
03828
possibly_expand_bam_data
[function]
[call site]
03829
hts_log
[function]
[call site]
03830
parse_cigar
[function]
[call site]
03831
hts_str2uint
[function]
[call site]
03832
hts_log
[function]
[call site]
03833
hts_log
[function]
[call site]
03834
hts_log
[function]
[call site]
03835
bam_cigar2rlen
[function]
[call site]
03836
hts_log
[function]
[call site]
03837
strchr
[call site]
03838
hts_log
[function]
[call site]
03839
hts_reg2bin
[function]
[call site]
03840
strchr
[call site]
03841
strcmp
[call site]
03842
strcmp
[call site]
03843
bam_name2id
[function]
[call site]
03844
hts_log
[function]
[call site]
03845
hts_strprint
[function]
[call site]
03846
hts_log
[function]
[call site]
03847
hts_str2uint
[function]
[call site]
03848
hts_log
[function]
[call site]
03849
hts_str2int
[function]
[call site]
03850
hts_log
[function]
[call site]
03851
strchr
[call site]
03852
strcmp
[call site]
03853
hts_log
[function]
[call site]
03854
bam_cigar2qlen
[function]
[call site]
03855
hts_log
[function]
[call site]
03856
possibly_expand_bam_data
[function]
[call site]
03857
possibly_expand_bam_data
[function]
[call site]
03858
hts_log
[function]
[call site]
03859
hts_log
[function]
[call site]
03860
aux_parse
[function]
[call site]
03861
hts_log
[function]
[call site]
03862
isspace_c
[function]
[call site]
03863
hts_log
[function]
[call site]
03864
isspace_c
[function]
[call site]
03865
isspace_c
[function]
[call site]
03866
kh_get_tag
[function]
[call site]
03867
possibly_expand_bam_data
[function]
[call site]
03868
isspace_c
[function]
[call site]
03869
hts_log
[function]
[call site]
03870
possibly_expand_bam_data
[function]
[call site]
03871
hts_str2int
[function]
[call site]
03872
i16_to_le
[function]
[call site]
03873
u16_to_le
[function]
[call site]
03874
i32_to_le
[function]
[call site]
03875
u32_to_le
[function]
[call site]
03876
hts_str2uint
[function]
[call site]
03877
u16_to_le
[function]
[call site]
03878
u32_to_le
[function]
[call site]
03879
strtod
[call site]
03880
float_to_le
[function]
[call site]
03881
u32_to_le
[function]
[call site]
03882
strtod
[call site]
03883
double_to_le
[function]
[call site]
03884
u64_to_le
[function]
[call site]
03885
strchr
[call site]
03886
strlen
[call site]
03887
isspace_c
[function]
[call site]
03888
hts_log
[function]
[call site]
03889
possibly_expand_bam_data
[function]
[call site]
03890
isspace_c
[function]
[call site]
03891
hts_log
[function]
[call site]
03892
sam_parse_B_vals
[function]
[call site]
03893
sam_parse_B_vals_r
[function]
[call site]
03894
hts_log
[function]
[call site]
03895
aux_type2size
[function]
[call site]
03896
hts_log
[function]
[call site]
03897
possibly_expand_bam_data
[function]
[call site]
03898
hts_log
[function]
[call site]
03899
sam_parse_Bc_vals
[function]
[call site]
03900
grow_B_array
[function]
[call site]
03901
__errno_location
[call site]
03902
possibly_expand_bam_data
[function]
[call site]
03903
hts_log
[function]
[call site]
03904
hts_str2int
[function]
[call site]
03905
sam_parse_BC_vals
[function]
[call site]
03906
grow_B_array
[function]
[call site]
03907
hts_str2uint
[function]
[call site]
03908
sam_parse_Bs_vals
[function]
[call site]
03909
grow_B_array
[function]
[call site]
03910
hts_str2int
[function]
[call site]
03911
i16_to_le
[function]
[call site]
03912
sam_parse_BS_vals
[function]
[call site]
03913
grow_B_array
[function]
[call site]
03914
hts_str2uint
[function]
[call site]
03915
u16_to_le
[function]
[call site]
03916
sam_parse_Bi_vals
[function]
[call site]
03917
grow_B_array
[function]
[call site]
03918
hts_str2int
[function]
[call site]
03919
i32_to_le
[function]
[call site]
03920
sam_parse_BI_vals
[function]
[call site]
03921
grow_B_array
[function]
[call site]
03922
hts_str2uint
[function]
[call site]
03923
u32_to_le
[function]
[call site]
03924
sam_parse_Bf_vals
[function]
[call site]
03925
grow_B_array
[function]
[call site]
03926
strtod
[call site]
03927
float_to_le
[function]
[call site]
03928
hts_log
[function]
[call site]
03929
i32_to_le
[function]
[call site]
03930
hts_str2int
[function]
[call site]
03931
sam_parse_B_vals_r
[function]
[call site]
03932
sam_parse_B_vals_r
[function]
[call site]
03933
sam_parse_B_vals_r
[function]
[call site]
03934
sam_parse_B_vals_r
[function]
[call site]
03935
sam_parse_B_vals_r
[function]
[call site]
03936
sam_parse_B_vals_r
[function]
[call site]
03937
hts_log
[function]
[call site]
03938
isspace_c
[function]
[call site]
03939
hts_strprint
[function]
[call site]
03940
hts_log
[function]
[call site]
03941
isspace_c
[function]
[call site]
03942
hts_log
[function]
[call site]
03943
bam_tag2cigar
[function]
[call site]
03944
sam_state_destroy
[function]
[call site]
03945
__errno_location
[call site]
03946
bgzf_seek
[function]
[call site]
03947
bgzf_seek_common
[function]
[call site]
03948
sam_hdr_fill_hrecs
[function]
[call site]
03949
pthread_create
[call site]
03950
sam_dispatcher_read
[function]
[call site]
03951
ks_resize
[function]
[call site]
03952
pthread_mutex_lock
[call site]
03953
pthread_cond_signal
[call site]
03954
pthread_mutex_unlock
[call site]
03955
hts_tpool_process_shutdown
[function]
[call site]
03956
pthread_mutex_unlock
[call site]
03957
pthread_mutex_lock
[call site]
03958
pthread_mutex_unlock
[call site]
03959
calloc
[call site]
03960
realloc
[call site]
03961
bgzf_read
[function]
[call site]
03962
hread
[function]
[call site]
03963
__errno_location
[call site]
03964
sam_state_err
[function]
[call site]
03965
realloc
[call site]
03966
__assert_fail
[call site]
03967
__assert_fail
[call site]
03968
__assert_fail
[call site]
03969
ks_resize
[function]
[call site]
03970
hts_tpool_dispatch3
[function]
[call site]
03971
sam_parse_worker
[function]
[call site]
03972
pthread_mutex_lock
[call site]
03973
pthread_mutex_unlock
[call site]
03974
calloc
[call site]
03975
calloc
[call site]
03976
sam_state_err
[function]
[call site]
03977
sam_state_err
[function]
[call site]
03978
realloc
[call site]
03979
sam_state_err
[function]
[call site]
03980
strchr
[call site]
03981
sam_parse1
[function]
[call site]
03982
__errno_location
[call site]
03983
sam_state_err
[function]
[call site]
03984
cleanup_sp_lines
[function]
[call site]
03985
__assert_fail
[call site]
03986
sam_free_sp_bams
[function]
[call site]
03987
pthread_mutex_lock
[call site]
03988
pthread_mutex_unlock
[call site]
03989
sam_free_sp_bams
[function]
[call site]
03990
cleanup_sp_lines
[function]
[call site]
03991
cleanup_sp_bams
[function]
[call site]
03992
sam_free_sp_bams
[function]
[call site]
03993
pthread_mutex_lock
[call site]
03994
pthread_mutex_unlock
[call site]
03995
pthread_mutex_unlock
[call site]
03996
hts_tpool_dispatch
[function]
[call site]
03997
sam_parse_eof
[function]
[call site]
03998
pthread_mutex_lock
[call site]
03999
pthread_cond_wait
[call site]
04000
pthread_cond_signal
[call site]
04001
pthread_mutex_unlock
[call site]
04002
hts_tpool_process_shutdown
[function]
[call site]
04003
pthread_mutex_unlock
[call site]
04004
pthread_mutex_lock
[call site]
04005
pthread_cond_signal
[call site]
04006
pthread_mutex_unlock
[call site]
04007
pthread_mutex_lock
[call site]
04008
__errno_location
[call site]
04009
sam_state_err
[function]
[call site]
04010
hts_tpool_process_shutdown
[function]
[call site]
04011
hts_log
[function]
[call site]
04012
__errno_location
[call site]
04013
pthread_mutex_lock
[call site]
04014
pthread_mutex_unlock
[call site]
04015
hts_tpool_next_result_wait
[function]
[call site]
04016
hts_tpool_result_data
[function]
[call site]
04017
hts_tpool_delete_result
[function]
[call site]
04018
pthread_mutex_lock
[call site]
04019
pthread_mutex_unlock
[call site]
04020
bam_copy1
[function]
[call site]
04021
realloc_bam_data
[function]
[call site]
04022
pthread_mutex_lock
[call site]
04023
pthread_mutex_unlock
[call site]
04024
hts_getline
[function]
[call site]
04025
sam_parse1
[function]
[call site]
04026
hts_log
[function]
[call site]
04027
fastq_state_init
[function]
[call site]
04028
fastq_parse1
[function]
[call site]
04029
hts_getline
[function]
[call site]
04030
strpbrk
[call site]
04031
isspace_c
[function]
[call site]
04032
isspace_c
[function]
[call site]
04033
hts_getline
[function]
[call site]
04034
kputsn
[function]
[call site]
04035
hts_getline
[function]
[call site]
04036
kputsn
[function]
[call site]
04037
isdigit_c
[function]
[call site]
04038
regexec
[call site]
04039
hts_log
[function]
[call site]
04040
isalpha_c
[function]
[call site]
04041
bam_set1
[function]
[call site]
04042
bam_aux_append
[function]
[call site]
04043
__assert_fail
[call site]
04044
realloc_bam_data
[function]
[call site]
04045
__errno_location
[call site]
04046
isdigit_c
[function]
[call site]
04047
strtol
[call site]
04048
isdigit_c
[function]
[call site]
04049
isspace_c
[function]
[call site]
04050
bam_aux_append
[function]
[call site]
04051
aux_parse
[function]
[call site]
04052
__errno_location
[call site]
04053
__errno_location
[call site]
04054
sam_passes_filter
[function]
[call site]
04055
hts_filter_eval2
[function]
[call site]
04056
ks_free
[function]
[call site]
04057
hts_filter_eval_
[function]
[call site]
04058
expression
[function]
[call site]
04059
and_expr
[function]
[call site]
04060
eq_expr
[function]
[call site]
04061
cmp_expr
[function]
[call site]
04062
bitor_expr
[function]
[call site]
04063
bitxor_expr
[function]
[call site]
04064
bitand_expr
[function]
[call site]
04065
add_expr
[function]
[call site]
04066
mul_expr
[function]
[call site]
04067
unary_expr
[function]
[call site]
04068
ws
[function]
[call site]
04069
simple_expr
[function]
[call site]
04070
ws
[function]
[call site]
04071
expression
[function]
[call site]
04072
ws
[function]
[call site]
04073
fprintf
[call site]
04074
hts_str2dbl
[function]
[call site]
04075
ks_clear
[function]
[call site]
04079
kputsn
[function]
[call site]
04080
func_expr
[function]
[call site]
04081
strncmp
[call site]
04082
expression
[function]
[call site]
04083
expr_func_avg
[function]
[call site]
04084
strncmp
[call site]
04085
expression
[function]
[call site]
04086
ws
[function]
[call site]
04087
expression
[function]
[call site]
04088
hts_expr_val_existsT
[function]
[call site]
04089
hts_expr_val_exists
[function]
[call site]
04090
hts_expr_val_free
[function]
[call site]
04091
ks_free
[function]
[call site]
04092
strncmp
[call site]
04093
expression
[function]
[call site]
04094
hts_expr_val_existsT
[function]
[call site]
04095
strncmp
[call site]
04096
expression
[function]
[call site]
04097
exp
[call site]
04098
hts_expr_val_undef
[function]
[call site]
04099
ks_clear
[function]
[call site]
04100
strncmp
[call site]
04101
expression
[function]
[call site]
04102
expr_func_length
[function]
[call site]
04103
strncmp
[call site]
04104
expression
[function]
[call site]
04105
log
[call site]
04106
hts_expr_val_undef
[function]
[call site]
04107
strncmp
[call site]
04108
expression
[function]
[call site]
04109
expr_func_min
[function]
[call site]
04110
strncmp
[call site]
04111
expression
[function]
[call site]
04112
expr_func_max
[function]
[call site]
04113
strncmp
[call site]
04114
expression
[function]
[call site]
04115
ws
[function]
[call site]
04116
expression
[function]
[call site]
04117
hts_expr_val_exists
[function]
[call site]
04118
hts_expr_val_undef
[function]
[call site]
04119
hts_expr_val_free
[function]
[call site]
04120
pow
[call site]
04121
hts_expr_val_free
[function]
[call site]
04122
hts_expr_val_undef
[function]
[call site]
04123
strncmp
[call site]
04124
expression
[function]
[call site]
04125
sqrt
[call site]
04126
hts_expr_val_undef
[function]
[call site]
04127
ws
[function]
[call site]
04128
fprintf
[call site]
04129
hts_expr_val_exists
[function]
[call site]
04130
hts_expr_val_undef
[function]
[call site]
04131
unary_expr
[function]
[call site]
04132
hts_expr_val_exists
[function]
[call site]
04133
unary_expr
[function]
[call site]
04134
hts_expr_val_exists
[function]
[call site]
04135
hts_expr_val_undef
[function]
[call site]
04136
hts_expr_val_exists
[function]
[call site]
04137
hts_expr_val_undef
[function]
[call site]
04138
simple_expr
[function]
[call site]
04139
ws
[function]
[call site]
04140
unary_expr
[function]
[call site]
04141
hts_expr_val_exists
[function]
[call site]
04142
hts_expr_val_undef
[function]
[call site]
04143
hts_expr_val_free
[function]
[call site]
04144
hts_expr_val_undef
[function]
[call site]
04145
hts_expr_val_exists
[function]
[call site]
04146
hts_expr_val_free
[function]
[call site]
04147
ws
[function]
[call site]
04148
mul_expr
[function]
[call site]
04149
hts_expr_val_exists
[function]
[call site]
04150
hts_expr_val_free
[function]
[call site]
04151
hts_expr_val_undef
[function]
[call site]
04152
hts_expr_val_free
[function]
[call site]
04153
ws
[function]
[call site]
04154
add_expr
[function]
[call site]
04155
hts_expr_val_exists
[function]
[call site]
04156
hts_expr_val_free
[function]
[call site]
04157
hts_expr_val_free
[function]
[call site]
04158
hts_expr_val_undef
[function]
[call site]
04159
ws
[function]
[call site]
04160
bitand_expr
[function]
[call site]
04161
hts_expr_val_exists
[function]
[call site]
04162
hts_expr_val_free
[function]
[call site]
04163
hts_expr_val_free
[function]
[call site]
04164
hts_expr_val_undef
[function]
[call site]
04165
ws
[function]
[call site]
04166
bitxor_expr
[function]
[call site]
04167
hts_expr_val_exists
[function]
[call site]
04168
hts_expr_val_free
[function]
[call site]
04169
hts_expr_val_free
[function]
[call site]
04170
hts_expr_val_undef
[function]
[call site]
04171
ws
[function]
[call site]
04172
cmp_expr
[function]
[call site]
04173
hts_expr_val_exists
[function]
[call site]
04174
hts_expr_val_undef
[function]
[call site]
04175
strcmp
[call site]
04176
cmp_expr
[function]
[call site]
04177
hts_expr_val_exists
[function]
[call site]
04178
hts_expr_val_undef
[function]
[call site]
04179
strcmp
[call site]
04180
cmp_expr
[function]
[call site]
04181
hts_expr_val_exists
[function]
[call site]
04182
hts_expr_val_undef
[function]
[call site]
04183
strcmp
[call site]
04184
cmp_expr
[function]
[call site]
04185
hts_expr_val_exists
[function]
[call site]
04186
hts_expr_val_undef
[function]
[call site]
04187
strcmp
[call site]
04188
hts_expr_val_exists
[function]
[call site]
04189
hts_expr_val_undef
[function]
[call site]
04190
hts_expr_val_free
[function]
[call site]
04191
ws
[function]
[call site]
04192
eq_expr
[function]
[call site]
04193
hts_expr_val_exists
[function]
[call site]
04194
hts_expr_val_undef
[function]
[call site]
04195
strcmp
[call site]
04196
eq_expr
[function]
[call site]
04197
hts_expr_val_exists
[function]
[call site]
04198
hts_expr_val_undef
[function]
[call site]
04199
strcmp
[call site]
04200
eq_expr
[function]
[call site]
04201
hts_expr_val_free
[function]
[call site]
04202
regcomp
[call site]
04203
regerror
[call site]
04204
fprintf
[call site]
04205
hts_expr_val_free
[function]
[call site]
04206
regexec
[call site]
04207
regfree
[call site]
04208
hts_expr_val_exists
[function]
[call site]
04209
hts_expr_val_undef
[function]
[call site]
04210
hts_expr_val_free
[function]
[call site]
04211
ws
[function]
[call site]
04212
eq_expr
[function]
[call site]
04213
hts_expr_val_existsT
[function]
[call site]
04214
hts_expr_val_undef
[function]
[call site]
04215
eq_expr
[function]
[call site]
04216
hts_expr_val_existsT
[function]
[call site]
04217
hts_expr_val_undef
[function]
[call site]
04218
hts_expr_val_existsT
[function]
[call site]
04219
hts_expr_val_undef
[function]
[call site]
04220
hts_expr_val_existsT
[function]
[call site]
04221
hts_expr_val_undef
[function]
[call site]
04222
hts_expr_val_free
[function]
[call site]
04223
ws
[function]
[call site]
04224
fprintf
[call site]
04225
hts_expr_val_exists
[function]
[call site]
04226
bam_sym_lookup
[function]
[call site]
04227
memcmp
[call site]
04228
ks_clear
[function]
[call site]
04229
kputw
[function]
[call site]
04230
kputc_
[function]
[call site]
04231
kputs
[function]
[call site]
04232
kputs
[function]
[call site]
04233
memcmp
[call site]
04234
bam_endpos
[function]
[call site]
04235
memcmp
[call site]
04236
memcmp
[call site]
04237
memcmp
[call site]
04238
memcmp
[call site]
04239
memcmp
[call site]
04240
memcmp
[call site]
04241
memcmp
[call site]
04242
memcmp
[call site]
04243
memcmp
[call site]
04244
memcmp
[call site]
04245
memcmp
[call site]
04246
memcmp
[call site]
04247
memcmp
[call site]
04248
hts_log
[function]
[call site]
04249
memcmp
[call site]
04250
memcmp
[call site]
04251
bam_get_library
[function]
[call site]
04252
bam_aux_get
[function]
[call site]
04253
sam_hdr_find_tag_id
[function]
[call site]
04254
ks_clear
[function]
[call site]
04255
kputs
[function]
[call site]
04256
memcmp
[call site]
04257
memcmp
[call site]
04258
memcmp
[call site]
04259
sam_hdr_tid2name
[function]
[call site]
04260
ks_clear
[function]
[call site]
04261
kputs
[function]
[call site]
04262
memcmp
[call site]
04263
memcmp
[call site]
04264
memcmp
[call site]
04265
memcmp
[call site]
04266
memcmp
[call site]
04267
bam_cigar2qlen
[function]
[call site]
04268
memcmp
[call site]
04269
ks_clear
[function]
[call site]
04270
kputs
[function]
[call site]
04271
memcmp
[call site]
04272
ks_clear
[function]
[call site]
04273
ks_resize
[function]
[call site]
04274
memcmp
[call site]
04275
bam_cigar2rlen
[function]
[call site]
04276
memcmp
[call site]
04277
sam_hdr_tid2name
[function]
[call site]
04278
ks_clear
[function]
[call site]
04279
kputs
[function]
[call site]
04280
memcmp
[call site]
04281
sam_hdr_tid2name
[function]
[call site]
04282
ks_clear
[function]
[call site]
04283
kputs
[function]
[call site]
04284
memcmp
[call site]
04285
memcmp
[call site]
04286
ks_clear
[function]
[call site]
04287
ks_resize
[function]
[call site]
04288
nibble2base
[function]
[call site]
04289
memcmp
[call site]
04290
memcmp
[call site]
04291
bam_aux_get
[function]
[call site]
04292
ks_clear
[function]
[call site]
04293
kputs
[function]
[call site]
04294
ks_clear
[function]
[call site]
04295
kputsn
[function]
[call site]
04296
bam_aux2i
[function]
[call site]
04297
get_int_aux_val
[function]
[call site]
04298
le_to_i8
[function]
[call site]
04299
le_to_i16
[function]
[call site]
04300
le_to_u16
[function]
[call site]
04301
le_to_i32
[function]
[call site]
04302
le_to_u32
[function]
[call site]
04303
__errno_location
[call site]
04304
bam_aux2f
[function]
[call site]
04305
le_to_double
[function]
[call site]
04306
le_to_float
[function]
[call site]
04307
get_int_aux_val
[function]
[call site]
04308
hts_log
[function]
[call site]
04309
hts_log
[function]
[call site]
04310
hts_expr_val_free
[function]
[call site]
04311
hts_expr_val_free
[function]
[call site]
04312
sam_write1
[function]
[call site]
04313
bam_write_idx1
[function]
[call site]
04314
bam_write1
[function]
[call site]
04315
hts_log
[function]
[call site]
04316
__errno_location
[call site]
04317
hts_log
[function]
[call site]
04318
bgzf_flush_try
[function]
[call site]
04319
lazy_flush
[function]
[call site]
04320
ed_swap_4p
[function]
[call site]
04321
ed_swap_4p
[function]
[call site]
04322
bgzf_write_small
[function]
[call site]
04323
bgzf_write
[function]
[call site]
04324
swap_data
[function]
[call site]
04325
bgzf_write_small
[function]
[call site]
04326
bgzf_write_small
[function]
[call site]
04327
bgzf_write_small
[function]
[call site]
04328
bgzf_write_small
[function]
[call site]
04329
bam_cigar2rlen
[function]
[call site]
04330
hts_log
[function]
[call site]
04331
u32_to_le
[function]
[call site]
04332
u32_to_le
[function]
[call site]
04333
bgzf_write_small
[function]
[call site]
04334
bgzf_write_small
[function]
[call site]
04335
bgzf_write_small
[function]
[call site]
04336
u32_to_le
[function]
[call site]
04337
bgzf_write_small
[function]
[call site]
04338
bgzf_write_small
[function]
[call site]
04339
swap_data
[function]
[call site]
04340
bgzf_flush_try
[function]
[call site]
04341
hts_idx_amend_last
[function]
[call site]
04342
bam_write1
[function]
[call site]
04343
bam_endpos
[function]
[call site]
04344
bgzf_idx_push
[function]
[call site]
04345
hts_idx_push
[function]
[call site]
04346
hts_idx_check_range
[function]
[call site]
04347
hts_idx_maxpos
[function]
[call site]
04348
hts_bin_maxpos
[function]
[call site]
04349
hts_log
[function]
[call site]
04350
idx_format_name
[function]
[call site]
04351
hts_log
[function]
[call site]
04352
__errno_location
[call site]
04353
realloc
[call site]
04354
hts_log
[function]
[call site]
04355
hts_log
[function]
[call site]
04356
hts_log
[function]
[call site]
04357
hts_log
[function]
[call site]
04358
kh_init_bin
[function]
[call site]
04359
calloc
[call site]
04360
insert_to_l
[function]
[call site]
04361
realloc
[call site]
04362
hts_reg2bin
[function]
[call site]
04363
insert_to_b
[function]
[call site]
04364
kh_put_bin
[function]
[call site]
04365
kh_resize_bin
[function]
[call site]
04366
realloc
[call site]
04367
calloc
[call site]
04368
kh_del_bin
[function]
[call site]
04369
realloc
[call site]
04370
insert_to_b
[function]
[call site]
04371
insert_to_b
[function]
[call site]
04372
hts_idx_check_range
[function]
[call site]
04373
pthread_mutex_lock
[call site]
04374
realloc
[call site]
04375
pthread_mutex_unlock
[call site]
04376
pthread_mutex_unlock
[call site]
04377
sam_hdr_tid2name
[function]
[call site]
04378
sam_hdr_tid2len
[function]
[call site]
04379
kh_get_s2i
[function]
[call site]
04380
hts_log
[function]
[call site]
04381
cram_put_bam_seq
[function]
[call site]
04382
cram_new_container
[function]
[call site]
04383
pthread_mutex_lock
[call site]
04384
pthread_mutex_unlock
[call site]
04385
hts_log
[function]
[call site]
04386
pthread_mutex_lock
[call site]
04387
hts_log
[function]
[call site]
04388
pthread_mutex_unlock
[call site]
04389
cram_next_container
[function]
[call site]
04390
cram_update_curr_slice
[function]
[call site]
04391
hts_log
[function]
[call site]
04392
cram_flush_container_mt
[function]
[call site]
04393
cram_free_slice
[function]
[call site]
04394
cram_free_container
[function]
[call site]
04395
cram_new_container
[function]
[call site]
04396
pthread_mutex_lock
[call site]
04397
pthread_mutex_unlock
[call site]
04398
cram_new_slice
[function]
[call site]
04399
calloc
[call site]
04400
calloc
[call site]
04401
cram_new_block
[function]
[call site]
04402
cram_new_block
[function]
[call site]
04403
cram_new_block
[function]
[call site]
04404
cram_new_block
[function]
[call site]
04405
cram_new_block
[function]
[call site]
04406
cram_new_block
[function]
[call site]
04407
string_pool_create
[function]
[call site]
04408
kh_init_m_s2i
[function]
[call site]
04409
kh_init_m_s2i
[function]
[call site]
04410
cram_free_slice
[function]
[call site]
04411
pthread_mutex_lock
[call site]
04412
hts_log
[function]
[call site]
04413
pthread_mutex_unlock
[call site]
04414
pthread_mutex_lock
[call site]
04415
calloc
[call site]
04416
pthread_mutex_unlock
[call site]
04417
pthread_mutex_lock
[call site]
04418
calloc
[call site]
04419
pthread_mutex_unlock
[call site]
04420
pthread_mutex_lock
[call site]
04421
pthread_mutex_unlock
[call site]
04422
pthread_mutex_lock
[call site]
04423
calloc
[call site]
04424
pthread_mutex_unlock
[call site]
04425
pthread_mutex_unlock
[call site]
04426
bam_copy1
[function]
[call site]
04427
bam_dup1
[function]
[call site]
04428
bam_init1
[function]
[call site]
04429
bam_copy1
[function]
[call site]
04430
bam_destroy1
[function]
[call site]
04431
bam_cigar2qlen
[function]
[call site]
04432
hts_log
[function]
[call site]
04433
pthread_create
[call site]
04434
sam_dispatcher_write
[function]
[call site]
04435
hts_tpool_next_result_wait
[function]
[call site]
04436
hts_tpool_result_data
[function]
[call site]
04437
sam_state_err
[function]
[call site]
04438
bgzf_flush_try
[function]
[call site]
04439
bgzf_write
[function]
[call site]
04440
hwrite
[function]
[call site]
04441
bam_endpos
[function]
[call site]
04442
bgzf_idx_push
[function]
[call site]
04443
__errno_location
[call site]
04444
sam_state_err
[function]
[call site]
04445
sam_hdr_tid2name
[function]
[call site]
04446
sam_hdr_tid2len
[function]
[call site]
04447
hts_log
[function]
[call site]
04448
bam_endpos
[function]
[call site]
04449
hts_idx_push
[function]
[call site]
04450
__errno_location
[call site]
04451
sam_state_err
[function]
[call site]
04452
sam_hdr_tid2name
[function]
[call site]
04453
sam_hdr_tid2len
[function]
[call site]
04454
hts_log
[function]
[call site]
04455
__assert_fail
[call site]
04456
pthread_mutex_lock
[call site]
04457
pthread_mutex_unlock
[call site]
04458
bgzf_write
[function]
[call site]
04459
bgzf_flush_try
[function]
[call site]
04460
bgzf_write
[function]
[call site]
04461
hwrite
[function]
[call site]
04462
hts_tpool_delete_result
[function]
[call site]
04463
pthread_mutex_lock
[call site]
04464
pthread_mutex_unlock
[call site]
04465
sam_state_err
[function]
[call site]
04466
hts_tpool_process_shutdown
[function]
[call site]
04467
__errno_location
[call site]
04468
sam_state_err
[function]
[call site]
04469
hts_log
[function]
[call site]
04470
pthread_mutex_lock
[call site]
04471
pthread_mutex_unlock
[call site]
04472
pthread_mutex_unlock
[call site]
04473
calloc
[call site]
04474
calloc
[call site]
04475
bam_copy1
[function]
[call site]
04476
pthread_mutex_lock
[call site]
04477
pthread_mutex_unlock
[call site]
04478
hts_tpool_dispatch3
[function]
[call site]
04479
sam_format_worker
[function]
[call site]
04480
cleanup_sp_bams
[function]
[call site]
04481
cleanup_sp_lines
[function]
[call site]
04482
pthread_mutex_unlock
[call site]
04483
pthread_mutex_unlock
[call site]
04484
sam_format1
[function]
[call site]
04485
sam_format1_append
[function]
[call site]
04486
kputc
[function]
[call site]
04487
bgzf_flush_try
[function]
[call site]
04488
bgzf_write
[function]
[call site]
04489
hwrite
[function]
[call site]
04490
bam_endpos
[function]
[call site]
04491
bgzf_idx_push
[function]
[call site]
04492
sam_hdr_tid2name
[function]
[call site]
04493
sam_hdr_tid2len
[function]
[call site]
04494
hts_log
[function]
[call site]
04495
bam_endpos
[function]
[call site]
04496
hts_idx_push
[function]
[call site]
04497
sam_hdr_tid2name
[function]
[call site]
04498
sam_hdr_tid2len
[function]
[call site]
04499
hts_log
[function]
[call site]
04500
fastq_state_init
[function]
[call site]
04501
fastq_format1
[function]
[call site]
04502
kputc
[function]
[call site]
04503
kputs
[function]
[call site]
04504
bam_aux_get
[function]
[call site]
04505
kputc
[function]
[call site]
04506
isalpha_c
[function]
[call site]
04507
toupper_c
[function]
[call site]
04508
kputc
[function]
[call site]
04509
kputs
[function]
[call site]
04510
kputs
[function]
[call site]
04511
kputs
[function]
[call site]
04512
bam_aux_get
[function]
[call site]
04513
ksprintf
[function]
[call site]
04514
isupper_c
[function]
[call site]
04515
__ctype_b_loc
[call site]
04516
islower_c
[function]
[call site]
04517
__ctype_b_loc
[call site]
04518
hts_log
[function]
[call site]
04519
strlen
[call site]
04520
strlen
[call site]
04521
isalpha_c
[function]
[call site]
04522
islower_c
[function]
[call site]
04523
toupper_c
[function]
[call site]
04524
kh_get_tag
[function]
[call site]
04525
kputc_
[function]
[call site]
04526
sam_format_aux1
[function]
[call site]
04527
skip_aux
[function]
[call site]
04528
kputsn
[function]
[call site]
04529
ks_resize
[function]
[call site]
04530
kputc_
[function]
[call site]
04531
kputc_
[function]
[call site]
04532
kputc_
[function]
[call site]
04533
kputsn
[function]
[call site]
04534
kputc_
[function]
[call site]
04535
kputc_
[function]
[call site]
04536
kputc_
[function]
[call site]
04537
kputc
[function]
[call site]
04538
bgzf_flush_try
[function]
[call site]
04539
bgzf_write
[function]
[call site]
04540
hwrite
[function]
[call site]
04541
__errno_location
[call site]
04542
bam_destroy1
[function]
[call site]
04543
sam_hdr_destroy
[function]
[call site]
04544
hts_close_or_abort
[function]
[call site]
04545
hts_close
[function]
[call site]
04546
hts_close
[function]
[call site]
04547
view_sam
[function]
[call site]
04548
view_sam
[function]
[call site]
04549
view_vcf
[function]
[call site]
04550
abort
[call site]
04551
hopen
[function]
[call site]
04552
hts_hopen
[function]
[call site]
04553
hclose
[function]
[call site]
04554
abort
[call site]
04555
hts_open
[function]
[call site]
04556
abort
[call site]
04557
bcf_hdr_read
[function]
[call site]
04558
vcf_hdr_read
[function]
[call site]
04559
bcf_hdr_init
[function]
[call site]
04560
calloc
[call site]
04561
kh_init_vdict
[function]
[call site]
04562
calloc
[call site]
04563
kh_resize_vdict
[function]
[call site]
04564
realloc
[call site]
04565
__ac_FNV1a_hash_string
[function]
[call site]
04566
calloc
[call site]
04567
kh_init_hdict
[function]
[call site]
04568
strchr
[call site]
04569
bcf_hdr_append
[function]
[call site]
04570
bcf_hdr_parse_line
[function]
[call site]
04571
calloc
[call site]
04572
isalpha_c
[function]
[call site]
04573
isalnum_c
[function]
[call site]
04574
bcf_hrec_add_key
[function]
[call site]
04575
is_escaped
[function]
[call site]
04579
hts_strprint
[function]
[call site]
04580
hts_log
[function]
[call site]
04581
bcf_hrec_set_val
[function]
[call site]
04582
__errno_location
[call site]
04583
__errno_location
[call site]
04584
hts_log
[function]
[call site]
04585
isspace_c
[function]
[call site]
04586
hts_strprint
[function]
[call site]
04587
hts_log
[function]
[call site]
04588
bcf_hrec_destroy
[function]
[call site]
04589
hts_strprint
[function]
[call site]
04590
hts_log
[function]
[call site]
04591
bcf_hrec_destroy
[function]
[call site]
04592
bcf_hdr_add_hrec
[function]
[call site]
04593
get_hdr_aux
[function]
[call site]
04594
bcf_hrec_check
[function]
[call site]
04595
bcf_hrec_set_type
[function]
[call site]
04596
strcmp
[call site]
04597
strcmp
[call site]
04598
strcmp
[call site]
04599
strcmp
[call site]
04600
bcf_hrec_find_key
[function]
[call site]
04601
strcasecmp
[call site]
04602
bcf_hrec_find_key
[function]
[call site]
04603
strcmp
[call site]
04604
bcf_hrec_find_key
[function]
[call site]
04605
hts_log
[function]
[call site]
04606
hts_log
[function]
[call site]
04607
hts_log
[function]
[call site]
04608
bcf_hdr_register_hrec
[function]
[call site]
04609
bcf_hrec_set_type
[function]
[call site]
04610
bcf_hrec_find_key
[function]
[call site]
04611
strtoll
[call site]
04612
bcf_hrec_find_key
[function]
[call site]
04613
strdup
[call site]
04614
kh_get_vdict
[function]
[call site]
04615
strcmp
[call site]
04616
kh_put_vdict
[function]
[call site]
04617
kh_resize_vdict
[function]
[call site]
04618
bcf_hrec_find_key
[function]
[call site]
04619
strtol
[call site]
04620
kh_del_vdict
[function]
[call site]
04621
hts_log
[function]
[call site]
04622
bcf_hdr_set_idx
[function]
[call site]
04623
hts_log
[function]
[call site]
04624
__errno_location
[call site]
04625
hts_resize_array_
[function]
[call site]
04626
hts_log
[function]
[call site]
04627
__errno_location
[call site]
04628
realloc
[call site]
04629
__errno_location
[call site]
04630
__errno_location
[call site]
04631
strerror
[call site]
04632
hts_log
[function]
[call site]
04633
__errno_location
[call site]
04634
abort
[call site]
04635
abort
[call site]
04636
kh_del_vdict
[function]
[call site]
04637
hrec_add_idx
[function]
[call site]
04638
realloc
[call site]
04639
realloc
[call site]
04640
strdup
[call site]
04641
kputw
[function]
[call site]
04642
strcmp
[call site]
04643
strcmp
[call site]
04644
strtol
[call site]
04645
hts_log
[function]
[call site]
04646
strcmp
[call site]
04647
strcmp
[call site]
04648
strcmp
[call site]
04649
strcmp
[call site]
04650
strcmp
[call site]
04651
strcmp
[call site]
04652
hts_log
[function]
[call site]
04653
strcmp
[call site]
04654
strcmp
[call site]
04655
strcmp
[call site]
04656
strcmp
[call site]
04657
strcmp
[call site]
04658
strcmp
[call site]
04659
strcmp
[call site]
04660
strcmp
[call site]
04661
strcmp
[call site]
04662
strcmp
[call site]
04663
__isoc99_sscanf
[call site]
04664
hts_log
[function]
[call site]
04665
hts_log
[function]
[call site]
04666
hts_log
[function]
[call site]
04667
strdup
[call site]
04668
kh_get_vdict
[function]
[call site]
04669
hrec_add_idx
[function]
[call site]
04670
kh_put_vdict
[function]
[call site]
04671
bcf_hdr_set_idx
[function]
[call site]
04672
kh_del_vdict
[function]
[call site]
04673
hrec_add_idx
[function]
[call site]
04674
bcf_hrec_destroy
[function]
[call site]
04675
ksprintf
[function]
[call site]
04676
kh_get_hdict
[function]
[call site]
04677
__ac_FNV1a_hash_string
[function]
[call site]
04678
bcf_hrec_destroy
[function]
[call site]
04679
strcmp
[call site]
04680
bcf_get_version
[function]
[call site]
04681
get_hdr_aux
[function]
[call site]
04682
bcf_hdr_get_version
[function]
[call site]
04683
bcf_hdr_get_hrec
[function]
[call site]
04684
ksprintf
[function]
[call site]
04685
get_hdr_aux
[function]
[call site]
04686
kh_get_hdict
[function]
[call site]
04687
strcmp
[call site]
04688
strcmp
[call site]
04689
ksprintf
[function]
[call site]
04690
get_hdr_aux
[function]
[call site]
04691
kh_get_hdict
[function]
[call site]
04692
strcmp
[call site]
04693
bcf_hrec_find_key
[function]
[call site]
04694
strcmp
[call site]
04695
kh_get_vdict
[function]
[call site]
04696
hts_log
[function]
[call site]
04697
strstr
[call site]
04698
strchr
[call site]
04699
strtol
[call site]
04700
__errno_location
[call site]
04701
__errno_location
[call site]
04702
strtol
[call site]
04703
__errno_location
[call site]
04704
__errno_location
[call site]
04705
bcf_hrec_find_key
[function]
[call site]
04706
ksprintf
[function]
[call site]
04707
kh_get_hdict
[function]
[call site]
04708
bcf_hrec_destroy
[function]
[call site]
04709
realloc
[call site]
04710
bcf_hdr_unregister_hrec
[function]
[call site]
04711
bcf_hrec_find_key
[function]
[call site]
04712
kh_get_vdict
[function]
[call site]
04713
kh_put_hdict
[function]
[call site]
04714
kh_resize_hdict
[function]
[call site]
04715
bcf_hdr_append
[function]
[call site]
04716
kh_destroy_vdict
[function]
[call site]
04717
hts_log
[function]
[call site]
04718
hts_getline
[function]
[call site]
04719
hts_log
[function]
[call site]
04720
hopen
[function]
[call site]
04721
hts_log
[function]
[call site]
04722
kgetline
[function]
[call site]
04723
hgets
[function]
[call site]
04724
strchr
[call site]
04725
kputs
[function]
[call site]
04726
kputsn
[function]
[call site]
04727
kputs
[function]
[call site]
04728
atol
[call site]
04729
kputl
[function]
[call site]
04730
kputll
[function]
[call site]
04731
kputsn
[function]
[call site]
04732
hclose
[function]
[call site]
04733
hts_log
[function]
[call site]
04734
kputsn
[function]
[call site]
04735
kputc
[function]
[call site]
04736
hts_log
[function]
[call site]
04737
bcf_hdr_parse
[function]
[call site]
04738
bcf_hdr_parse_line
[function]
[call site]
04739
strcasecmp
[call site]
04740
hts_log
[function]
[call site]
04741
bcf_hdr_add_hrec
[function]
[call site]
04742
bcf_hrec_destroy
[function]
[call site]
04743
bcf_hdr_parse_line
[function]
[call site]
04744
bcf_hdr_add_hrec
[function]
[call site]
04745
bcf_hrec_destroy
[function]
[call site]
04746
bcf_hdr_parse_line
[function]
[call site]
04747
bcf_hdr_add_hrec
[function]
[call site]
04748
bcf_hrec_destroy
[function]
[call site]
04749
__assert_fail
[call site]
04750
__errno_location
[call site]
04751
strerror
[call site]
04752
hts_log
[function]
[call site]
04753
strncmp
[call site]
04754
strchr
[call site]
04755
hts_strprint
[function]
[call site]
04756
hts_log
[function]
[call site]
04757
hts_log
[function]
[call site]
04758
bcf_hdr_parse_sample_line
[function]
[call site]
04759
strlen
[call site]
04760
strncmp
[call site]
04761
hts_log
[function]
[call site]
04762
strlen
[call site]
04763
strncmp
[call site]
04764
hts_log
[function]
[call site]
04765
bcf_hdr_add_sample_len
[function]
[call site]
04766
isspace_c
[function]
[call site]
04767
hts_log
[function]
[call site]
04768
kh_put_vdict
[function]
[call site]
04769
hts_log
[function]
[call site]
04770
bcf_hdr_sync
[function]
[call site]
04771
realloc
[call site]
04772
get_hdr_aux
[function]
[call site]
04773
bcf_hdr_check_sanity
[function]
[call site]
04774
bcf_get_version
[function]
[call site]
04775
bcf_hdr_id2int
[function]
[call site]
04776
kh_get_vdict
[function]
[call site]
04777
atoi
[call site]
04778
hts_log
[function]
[call site]
04779
hts_log
[function]
[call site]
04780
bcf_hdr_id2int
[function]
[call site]
04781
atoi
[call site]
04782
hts_log
[function]
[call site]
04783
hts_log
[function]
[call site]
04784
tbx_index_load3
[function]
[call site]
04785
index_load
[function]
[call site]
04786
calloc
[call site]
04787
hts_idx_load3
[function]
[call site]
04788
idx_find_and_load
[function]
[call site]
04789
strstr
[call site]
04790
strdup
[call site]
04791
__errno_location
[call site]
04792
strerror
[call site]
04793
hts_log
[function]
[call site]
04794
hts_idx_load3
[function]
[call site]
04795
hisremote
[function]
[call site]
04796
stat
[call site]
04797
hts_log
[function]
[call site]
04798
idx_test_and_fetch
[function]
[call site]
04799
hisremote
[function]
[call site]
04800
strncmp
[call site]
04801
strcspn
[call site]
04802
kputsn
[function]
[call site]
04803
access
[call site]
04804
hopen
[function]
[call site]
04805
hts_log
[function]
[call site]
04806
hts_detect_format2
[function]
[call site]
04807
hts_log
[function]
[call site]
04808
hts_log
[function]
[call site]
04809
hts_open_tmpfile
[function]
[call site]
04810
hts_log
[function]
[call site]
04811
hts_log
[function]
[call site]
04812
calloc
[call site]
04813
__errno_location
[call site]
04814
strerror
[call site]
04815
hts_log
[function]
[call site]
04816
hread
[function]
[call site]
04817
hwrite
[function]
[call site]
04818
__errno_location
[call site]
04819
strerror
[call site]
04820
hts_log
[function]
[call site]
04821
hts_log
[function]
[call site]
04822
hclose
[function]
[call site]
04823
__errno_location
[call site]
04824
strerror
[call site]
04825
hts_log
[function]
[call site]
04826
rename
[call site]
04827
__errno_location
[call site]
04828
strerror
[call site]
04829
hts_log
[function]
[call site]
04830
ks_clear
[function]
[call site]
04831
hclose
[function]
[call site]
04832
hts_log
[function]
[call site]
04833
hopen
[function]
[call site]
04834
hclose_abruptly
[function]
[call site]
04835
strlen
[call site]
04836
__errno_location
[call site]
04837
hclose_abruptly
[function]
[call site]
04838
hclose_abruptly
[function]
[call site]
04839
unlink
[call site]
04840
__errno_location
[call site]
04841
strdup
[call site]
04842
idx_read
[function]
[call site]
04843
bgzf_open
[function]
[call site]
04844
ed_is_big
[function]
[call site]
04845
bgzf_read
[function]
[call site]
04846
memcmp
[call site]
04847
bgzf_read
[function]
[call site]
04848
ed_swap_4p
[function]
[call site]
04849
bgzf_read
[function]
[call site]
04850
bgzf_read
[function]
[call site]
04851
ed_swap_4p
[function]
[call site]
04852
hts_idx_init
[function]
[call site]
04853
idx_read_core
[function]
[call site]
04857
ed_is_big
[function]
[call site]
04858
kh_init_bin
[function]
[call site]
04859
bgzf_read
[function]
[call site]
04860
ed_swap_4p
[function]
[call site]
04861
bgzf_read
[function]
[call site]
04862
ed_swap_4p
[function]
[call site]
04863
kh_put_bin
[function]
[call site]
04864
bgzf_read
[function]
[call site]
04865
ed_swap_8p
[function]
[call site]
04866
bgzf_read
[function]
[call site]
04867
ed_swap_4p
[function]
[call site]
04868
bgzf_read
[function]
[call site]
04869
swap_bins
[function]
[call site]
04870
ed_swap_8p
[function]
[call site]
04871
ed_swap_8p
[function]
[call site]
04872
bgzf_read
[function]
[call site]
04873
ed_swap_4p
[function]
[call site]
04874
bgzf_read
[function]
[call site]
04875
ed_swap_8p
[function]
[call site]
04876
update_loff
[function]
[call site]
04877
hts_bin_bot
[function]
[call site]
04878
hts_bin_level
[function]
[call site]
04879
bgzf_read
[function]
[call site]
04880
ed_swap_8p
[function]
[call site]
04881
memcmp
[call site]
04882
bgzf_read
[function]
[call site]
04883
le_to_u32
[function]
[call site]
04884
hts_idx_init
[function]
[call site]
04885
le_to_u32
[function]
[call site]
04886
bgzf_read
[function]
[call site]
04887
idx_read_core
[function]
[call site]
04888
memcmp
[call site]
04889
bgzf_read
[function]
[call site]
04890
ed_swap_4p
[function]
[call site]
04891
hts_idx_init
[function]
[call site]
04892
idx_read_core
[function]
[call site]
04893
__errno_location
[call site]
04894
bgzf_close
[function]
[call site]
04895
bgzf_close
[function]
[call site]
04896
hts_idx_destroy
[function]
[call site]
04897
__errno_location
[call site]
04898
strerror
[call site]
04899
hts_log
[function]
[call site]
04900
hts_idx_check_local
[function]
[call site]
04901
hisremote
[function]
[call site]
04902
strlen
[call site]
04903
strncmp
[call site]
04904
strncmp
[call site]
04905
hts_log
[function]
[call site]
04906
strlen
[call site]
04907
calloc
[call site]
04908
strcpy
[call site]
04909
stat
[call site]
04910
strcpy
[call site]
04911
stat
[call site]
04912
strcpy
[call site]
04913
stat
[call site]
04914
strcpy
[call site]
04915
stat
[call site]
04916
strcpy
[call site]
04917
stat
[call site]
04918
strcpy
[call site]
04919
stat
[call site]
04920
strcpy
[call site]
04921
stat
[call site]
04922
strcpy
[call site]
04923
stat
[call site]
04924
strcpy
[call site]
04925
strcmp
[call site]
04926
strcmp
[call site]
04927
strcpy
[call site]
04928
stat
[call site]
04929
strcpy
[call site]
04930
stat
[call site]
04931
hisremote
[function]
[call site]
04932
idx_filename
[function]
[call site]
04933
haddextension
[function]
[call site]
04934
find_scheme_handler
[function]
[call site]
04935
strncmp
[call site]
04936
strcspn
[call site]
04937
strchr
[call site]
04938
strip_extension
[function]
[call site]
04939
kputsn
[function]
[call site]
04940
kputs
[function]
[call site]
04941
kputs
[function]
[call site]
04942
idx_test_and_fetch
[function]
[call site]
04943
haddextension
[function]
[call site]
04944
idx_test_and_fetch
[function]
[call site]
04945
idx_filename
[function]
[call site]
04946
idx_filename
[function]
[call site]
04947
idx_filename
[function]
[call site]
04948
idx_filename
[function]
[call site]
04949
idx_filename
[function]
[call site]
04950
hts_log
[function]
[call site]
04951
hts_idx_load3
[function]
[call site]
04952
idx_read
[function]
[call site]
04953
hts_idx_get_meta
[function]
[call site]
04954
le_to_i32
[function]
[call site]
04955
le_to_i32
[function]
[call site]
04956
le_to_i32
[function]
[call site]
04957
le_to_i32
[function]
[call site]
04958
le_to_i32
[function]
[call site]
04959
le_to_i32
[function]
[call site]
04960
le_to_u32
[function]
[call site]
04961
get_tid
[function]
[call site]
04962
kh_init_s2i
[function]
[call site]
04963
kh_put_s2i
[function]
[call site]
04964
strdup
[call site]
04965
kh_del_s2i
[function]
[call site]
04966
kh_get_s2i
[function]
[call site]
04967
__errno_location
[call site]
04968
strerror
[call site]
04969
hts_log
[function]
[call site]
04970
strlen
[call site]
04971
hts_log
[function]
[call site]
04972
tbx_destroy
[function]
[call site]
04973
hts_idx_destroy
[function]
[call site]
04974
kh_destroy_s2i
[function]
[call site]
04975
tbx_seqnames
[function]
[call site]
04976
calloc
[call site]
04977
calloc
[call site]
04978
__assert_fail
[call site]
04979
__assert_fail
[call site]
04980
bcf_hdr_get_hrec
[function]
[call site]
04981
add_missing_contig_hrec
[function]
[call site]
04982
calloc
[call site]
04983
strdup
[call site]
04984
bcf_hrec_add_key
[function]
[call site]
04985
strlen
[call site]
04986
bcf_hrec_set_val
[function]
[call site]
04987
bcf_hdr_add_hrec
[function]
[call site]
04988
__errno_location
[call site]
04989
__errno_location
[call site]
04990
strerror
[call site]
04991
hts_log
[function]
[call site]
04992
bcf_hrec_destroy
[function]
[call site]
04993
__errno_location
[call site]
04994
bcf_hdr_sync
[function]
[call site]
04995
tbx_destroy
[function]
[call site]
04996
tbx_destroy
[function]
[call site]
04997
bcf_hdr_destroy
[function]
[call site]
04998
get_hdr_aux
[function]
[call site]
04999
kh_destroy_hdict
[function]
[call site]
05000
kh_destroy_vdict
[function]
[call site]
05001
bcf_hrec_destroy
[function]
[call site]
05002
hts_log
[function]
[call site]
05003
__assert_fail
[call site]
05004
bcf_hdr_init
[function]
[call site]
05005
hts_log
[function]
[call site]
05006
bgzf_read
[function]
[call site]
05007
hts_log
[function]
[call site]
05008
bcf_hdr_destroy
[function]
[call site]
05009
strncmp
[call site]
05010
strncmp
[call site]
05011
hts_log
[function]
[call site]
05012
hts_log
[function]
[call site]
05013
bcf_hdr_destroy
[function]
[call site]
05014
bgzf_read
[function]
[call site]
05015
__errno_location
[call site]
05016
__errno_location
[call site]
05017
bgzf_read
[function]
[call site]
05018
bcf_hdr_parse
[function]
[call site]
05019
bcf_hdr_incr_ref
[function]
[call site]
05020
get_hdr_aux
[function]
[call site]
05021
bgzf_set_private_data
[function]
[call site]
05022
__assert_fail
[call site]
05023
hdr_bgzf_private_data_cleanup
[function]
[call site]
05024
bcf_hdr_decr_ref
[function]
[call site]
05025
get_hdr_aux
[function]
[call site]
05026
bcf_hdr_destroy
[function]
[call site]
05027
hts_log
[function]
[call site]
05028
bcf_hdr_destroy
[function]
[call site]
05029
hts_close_or_abort
[function]
[call site]
05030
hts_close
[function]
[call site]
05031
bcf_hdr_write
[function]
[call site]
05032
__errno_location
[call site]
05033
bcf_hdr_sync
[function]
[call site]
05034
vcf_hdr_write
[function]
[call site]
05035
bcf_hdr_format
[function]
[call site]
05036
_bcf_hrec_format
[function]
[call site]
05037
ksprintf
[function]
[call site]
05038
strcmp
[call site]
05039
kputc
[function]
[call site]
05040
ksprintf
[function]
[call site]
05041
ksprintf
[function]
[call site]
05042
ksprintf
[function]
[call site]
05043
ksprintf
[function]
[call site]
05044
ksprintf
[function]
[call site]
05045
ksprintf
[function]
[call site]
05046
ksprintf
[function]
[call site]
05047
bgzf_write
[function]
[call site]
05048
bgzf_flush
[function]
[call site]
05049
hwrite
[function]
[call site]
05050
bcf_hdr_format
[function]
[call site]
05051
kputc
[function]
[call site]
05052
bgzf_write
[function]
[call site]
05053
u32_to_le
[function]
[call site]
05054
bgzf_write
[function]
[call site]
05055
bgzf_write
[function]
[call site]
05056
bgzf_flush
[function]
[call site]
05057
bcf_hdr_incr_ref
[function]
[call site]
05058
bgzf_set_private_data
[function]
[call site]
05059
hdr_bgzf_private_data_cleanup
[function]
[call site]
05060
bcf_init
[function]
[call site]
05061
calloc
[call site]
05062
bcf_read
[function]
[call site]
05063
vcf_read
[function]
[call site]
05064
hts_getline
[function]
[call site]
05065
vcf_parse
[function]
[call site]
05066
ks_resize
[function]
[call site]
05067
bcf_clear
[function]
[call site]
05068
bcf_float_set
[function]
[call site]
05069
kstrtok
[function]
[call site]
05070
kh_get_vdict
[function]
[call site]
05071
hts_log
[function]
[call site]
05072
fix_chromosome
[function]
[call site]
05073
ksprintf
[function]
[call site]
05074
bcf_hdr_parse_line
[function]
[call site]
05075
bcf_hdr_add_hrec
[function]
[call site]
05076
bcf_hrec_destroy
[function]
[call site]
05077
bcf_hdr_sync
[function]
[call site]
05078
kh_get_vdict
[function]
[call site]
05079
hts_log
[function]
[call site]
05080
kstrtok
[function]
[call site]
05081
hts_str2uint
[function]
[call site]
05082
hts_log
[function]
[call site]
05083
hts_log
[function]
[call site]
05084
kstrtok
[function]
[call site]
05085
memcmp
[call site]
05086
bcf_enc_vchar
[function]
[call site]
05087
bcf_enc_size
[function]
[call site]
05088
ks_resize
[function]
[call site]
05089
ks_resize
[function]
[call site]
05090
i16_to_le
[function]
[call site]
05091
i32_to_le
[function]
[call site]
05092
kputsn
[function]
[call site]
05093
bcf_enc_size
[function]
[call site]
05094
kstrtok
[function]
[call site]
05095
bcf_enc_vchar
[function]
[call site]
05096
kstrtok
[function]
[call site]
05097
memcmp
[call site]
05098
bcf_seqname_safe
[function]
[call site]
05099
bcf_seqname
[function]
[call site]
05100
bcf_hdr_id2name
[function]
[call site]
05101
hts_log
[function]
[call site]
05102
bcf_enc_vchar
[function]
[call site]
05103
kstrtok
[function]
[call site]
05104
memcmp
[call site]
05105
atof
[call site]
05106
bcf_float_set
[function]
[call site]
05107
kstrtok
[function]
[call site]
05108
memcmp
[call site]
05109
vcf_parse_filter
[function]
[call site]
05110
bcf_seqname_safe
[function]
[call site]
05111
hts_log
[function]
[call site]
05112
kstrtok
[function]
[call site]
05113
kh_get_vdict
[function]
[call site]
05114
hts_log
[function]
[call site]
05115
ksprintf
[function]
[call site]
05116
bcf_hdr_parse_line
[function]
[call site]
05117
bcf_hdr_add_hrec
[function]
[call site]
05118
bcf_hrec_destroy
[function]
[call site]
05119
bcf_hdr_sync
[function]
[call site]
05120
kh_get_vdict
[function]
[call site]
05121
bcf_seqname_safe
[function]
[call site]
05122
hts_log
[function]
[call site]
05123
bcf_enc_vint
[function]
[call site]
05124
bcf_enc_size
[function]
[call site]
05125
bcf_enc_int1
[function]
[call site]
05126
ks_resize
[function]
[call site]
05127
i16_to_le
[function]
[call site]
05128
i32_to_le
[function]
[call site]
05129
bcf_enc_size
[function]
[call site]
05130
ks_resize
[function]
[call site]
05131
bcf_enc_size
[function]
[call site]
05132
ks_resize
[function]
[call site]
05133
i16_to_le
[function]
[call site]
05134
bcf_enc_size
[function]
[call site]
05135
ks_resize
[function]
[call site]
05136
i32_to_le
[function]
[call site]
05137
bcf_enc_vint
[function]
[call site]
05138
kstrtok
[function]
[call site]
05139
memcmp
[call site]
05140
vcf_parse_info
[function]
[call site]
05141
bcf_seqname_safe
[function]
[call site]
05142
hts_log
[function]
[call site]
05143
kh_get_vdict
[function]
[call site]
05144
hts_log
[function]
[call site]
05145
ksprintf
[function]
[call site]
05146
bcf_hdr_parse_line
[function]
[call site]
05147
bcf_hdr_add_hrec
[function]
[call site]
05148
bcf_hrec_destroy
[function]
[call site]
05149
bcf_hdr_sync
[function]
[call site]
05150
kh_get_vdict
[function]
[call site]
05151
bcf_seqname_safe
[function]
[call site]
05152
hts_log
[function]
[call site]
05153
bcf_enc_int1
[function]
[call site]
05154
bcf_enc_size
[function]
[call site]
05155
bcf_enc_vchar
[function]
[call site]
05156
realloc
[call site]
05157
bcf_seqname_safe
[function]
[call site]
05158
hts_log
[function]
[call site]
05159
hts_str2int
[function]
[call site]
05160
bcf_seqname_safe
[function]
[call site]
05161
hts_log
[function]
[call site]
05162
bcf_enc_int1
[function]
[call site]
05163
bcf_enc_vint
[function]
[call site]
05164
memcmp
[call site]
05165
bcf_seqname_safe
[function]
[call site]
05166
hts_log
[function]
[call site]
05167
hts_str2dbl
[function]
[call site]
05168
bcf_float_set
[function]
[call site]
05169
bcf_enc_vfloat
[function]
[call site]
05170
__assert_fail
[call site]
05171
bcf_enc_size
[function]
[call site]
05172
serialize_float_array
[function]
[call site]
05173
ks_resize
[function]
[call site]
05174
float_to_le
[function]
[call site]
05175
kstrtok
[function]
[call site]
05176
vcf_parse_format
[function]
[call site]
05177
vcf_parse_format_empty1
[function]
[call site]
05178
bcf_seqname_safe
[function]
[call site]
05179
hts_log
[function]
[call site]
05180
vcf_parse_format_dict2
[function]
[call site]
05181
kstrtok
[function]
[call site]
05182
bcf_seqname_safe
[function]
[call site]
05183
hts_log
[function]
[call site]
05184
kh_get_vdict
[function]
[call site]
05185
bcf_seqname_safe
[function]
[call site]
05186
hts_log
[function]
[call site]
05187
bcf_seqname_safe
[function]
[call site]
05188
hts_log
[function]
[call site]
05189
ksprintf
[function]
[call site]
05190
bcf_hdr_parse_line
[function]
[call site]
05191
bcf_hdr_add_hrec
[function]
[call site]
05192
bcf_hrec_destroy
[function]
[call site]
05193
bcf_hdr_sync
[function]
[call site]
05194
kh_get_vdict
[function]
[call site]
05195
bcf_seqname_safe
[function]
[call site]
05196
hts_log
[function]
[call site]
05197
vcf_parse_format_max3
[function]
[call site]
05198
hts_log
[function]
[call site]
05199
vcf_parse_format_alloc4
[function]
[call site]
05200
bcf_seqname_safe
[function]
[call site]
05201
hts_log
[function]
[call site]
05202
align_mem
[function]
[call site]
05203
kputsn
[function]
[call site]
05204
bcf_seqname_safe
[function]
[call site]
05205
hts_log
[function]
[call site]
05206
bcf_seqname_safe
[function]
[call site]
05207
hts_log
[function]
[call site]
05208
ks_resize
[function]
[call site]
05209
bcf_seqname_safe
[function]
[call site]
05210
hts_log
[function]
[call site]
05211
bcf_seqname_safe
[function]
[call site]
05212
hts_log
[function]
[call site]
05213
vcf_parse_format_fill5
[function]
[call site]
05214
bcf_get_version
[function]
[call site]
05215
bcf_seqname_safe
[function]
[call site]
05216
hts_log
[function]
[call site]
05217
hts_str2uint
[function]
[call site]
05218
bcf_seqname_safe
[function]
[call site]
05219
hts_log
[function]
[call site]
05220
bcf_seqname_safe
[function]
[call site]
05221
hts_log
[function]
[call site]
05222
hts_str2int
[function]
[call site]
05223
bcf_seqname_safe
[function]
[call site]
05224
hts_log
[function]
[call site]
05225
isdigit_c
[function]
[call site]
05226
bcf_float_set
[function]
[call site]
05227
hts_str2dbl
[function]
[call site]
05228
bcf_seqname
[function]
[call site]
05229
hts_log
[function]
[call site]
05230
bcf_float_set
[function]
[call site]
05231
bcf_float_set
[function]
[call site]
05232
bcf_seqname_safe
[function]
[call site]
05233
hts_log
[function]
[call site]
05234
hts_strprint
[function]
[call site]
05235
bcf_seqname_safe
[function]
[call site]
05236
hts_log
[function]
[call site]
05237
bcf_float_set
[function]
[call site]
05238
bcf_float_set
[function]
[call site]
05239
vcf_parse_format_gt6
[function]
[call site]
05240
bcf_enc_int1
[function]
[call site]
05241
bcf_enc_size
[function]
[call site]
05242
kputsn
[function]
[call site]
05243
bcf_enc_vint
[function]
[call site]
05244
bcf_enc_size
[function]
[call site]
05245
serialize_float_array
[function]
[call site]
05246
bcf_seqname_safe
[function]
[call site]
05247
hts_log
[function]
[call site]
05248
vcf_parse_format_check7
[function]
[call site]
05249
bcf_seqname_safe
[function]
[call site]
05250
hts_log
[function]
[call site]
05251
bcf_seqname_safe
[function]
[call site]
05252
hts_log
[function]
[call site]
05253
get_rlen
[function]
[call site]
05254
bcf_hdr_id2int
[function]
[call site]
05255
svlen_on_ref_for_vcf_alt
[function]
[call site]
05256
strlen
[call site]
05257
memcmp
[call site]
05258
memcmp
[call site]
05259
memcmp
[call site]
05260
memcmp
[call site]
05261
strcmp
[call site]
05262
strcmp
[call site]
05263
strlen
[call site]
05264
bcf_dec_size
[function]
[call site]
05265
bcf_dec_typed_int1
[function]
[call site]
05266
bcf_dec_int1
[function]
[call site]
05267
le_to_i8
[function]
[call site]
05268
le_to_i16
[function]
[call site]
05269
le_to_i32
[function]
[call site]
05270
le_to_i64
[function]
[call site]
05271
le_to_u64
[function]
[call site]
05272
bcf_dec_size
[function]
[call site]
05273
svlen_on_ref_for_vcf_alt
[function]
[call site]
05274
strncmp
[call site]
05275
strncmp
[call site]
05276
bcf_dec_size
[function]
[call site]
05277
bcf_hdr_id2int
[function]
[call site]
05278
bcf_get_info
[function]
[call site]
05279
bcf_hdr_id2int
[function]
[call site]
05280
bcf_get_info_id
[function]
[call site]
05281
bcf_unpack
[function]
[call site]
05282
bcf_fmt_sized_array
[function]
[call site]
05283
bcf_dec_size
[function]
[call site]
05284
bcf_fmt_array
[function]
[call site]
05285
kputc_
[function]
[call site]
05286
memchr
[call site]
05287
kputsn
[function]
[call site]
05288
kputc
[function]
[call site]
05289
le_to_i8
[function]
[call site]
05290
kputc_
[function]
[call site]
05291
kputc
[function]
[call site]
05292
kputw
[function]
[call site]
05293
le_to_i16
[function]
[call site]
05294
kputc_
[function]
[call site]
05295
kputc
[function]
[call site]
05296
kputw
[function]
[call site]
05297
le_to_i32
[function]
[call site]
05298
kputc_
[function]
[call site]
05299
kputc
[function]
[call site]
05300
kputw
[function]
[call site]
05301
le_to_u32
[function]
[call site]
05302
kputc_
[function]
[call site]
05303
kputc
[function]
[call site]
05304
le_to_float
[function]
[call site]
05305
kputd
[function]
[call site]
05306
hts_log
[function]
[call site]
05307
exit
[call site]
05308
kputc_
[function]
[call site]
05309
hts_realloc_or_die
[function]
[call site]
05310
bcf_fmt_sized_array
[function]
[call site]
05311
kputc_
[function]
[call site]
05312
bcf_dec_size
[function]
[call site]
05313
hts_realloc_or_die
[function]
[call site]
05314
bcf_dec_int1
[function]
[call site]
05315
hts_realloc_or_die
[function]
[call site]
05316
bcf_unpack_info_core1
[function]
[call site]
05317
bcf_dec_typed_int1
[function]
[call site]
05318
bcf_dec_size
[function]
[call site]
05319
le_to_i16
[function]
[call site]
05320
le_to_i32
[function]
[call site]
05321
le_to_float
[function]
[call site]
05322
le_to_i64
[function]
[call site]
05323
hts_realloc_or_die
[function]
[call site]
05324
bcf_unpack_fmt_core1
[function]
[call site]
05325
bcf_dec_typed_int1
[function]
[call site]
05326
bcf_dec_size
[function]
[call site]
05327
bcf_get_info
[function]
[call site]
05328
bcf_dec_typed_int1
[function]
[call site]
05329
bcf_unpack_info_core1
[function]
[call site]
05330
bcf_unpack_info_core1
[function]
[call site]
05331
bcf_dec_size
[function]
[call site]
05332
bcf_hdr_id2int
[function]
[call site]
05333
bcf_get_fmt
[function]
[call site]
05334
bcf_hdr_id2int
[function]
[call site]
05335
bcf_get_fmt_id
[function]
[call site]
05336
bcf_unpack
[function]
[call site]
05337
bcf_dec_typed_int1
[function]
[call site]
05338
bcf_unpack_fmt_core1
[function]
[call site]
05339
bcf_dec_size
[function]
[call site]
05340
le_to_i8
[function]
[call site]
05341
le_to_i16
[function]
[call site]
05342
le_to_i32
[function]
[call site]
05343
le_to_i64
[function]
[call site]
05344
le_to_i8
[function]
[call site]
05345
le_to_i16
[function]
[call site]
05346
le_to_i32
[function]
[call site]
05347
le_to_i64
[function]
[call site]
05348
bgzf_get_private_data
[function]
[call site]
05349
__assert_fail
[call site]
05350
bcf_read1_core
[function]
[call site]
05351
bgzf_read
[function]
[call site]
05352
bcf_clear
[function]
[call site]
05353
le_to_u32
[function]
[call site]
05354
le_to_u32
[function]
[call site]
05355
ks_resize
[function]
[call site]
05356
ks_resize
[function]
[call site]
05357
le_to_i32
[function]
[call site]
05358
le_to_u32
[function]
[call site]
05359
le_to_i32
[function]
[call site]
05360
le_to_float
[function]
[call site]
05361
le_to_u16
[function]
[call site]
05362
le_to_u16
[function]
[call site]
05363
le_to_u32
[function]
[call site]
05364
bgzf_read
[function]
[call site]
05365
bgzf_read
[function]
[call site]
05366
bcf_record_check
[function]
[call site]
05367
bcf_get_version
[function]
[call site]
05368
bcf_hdr_id2int
[function]
[call site]
05369
hts_log
[function]
[call site]
05370
bcf_dec_size_safe
[function]
[call site]
05371
bcf_dec_typed_int1_safe
[function]
[call site]
05372
le_to_i16
[function]
[call site]
05373
le_to_i32
[function]
[call site]
05374
bcf_seqname_safe
[function]
[call site]
05375
get_type_name
[function]
[call site]
05376
hts_log
[function]
[call site]
05377
bcf_seqname_safe
[function]
[call site]
05378
hts_log
[function]
[call site]
05379
bcf_dec_size_safe
[function]
[call site]
05380
bcf_seqname_safe
[function]
[call site]
05381
get_type_name
[function]
[call site]
05382
bcf_dec_size_safe
[function]
[call site]
05383
bcf_seqname_safe
[function]
[call site]
05384
get_type_name
[function]
[call site]
05385
bcf_dec_int1
[function]
[call site]
05386
bcf_seqname_safe
[function]
[call site]
05387
hts_log
[function]
[call site]
05388
bcf_dec_typed_int1_safe
[function]
[call site]
05389
bcf_seqname_safe
[function]
[call site]
05390
bcf_dec_size_safe
[function]
[call site]
05391
bcf_seqname_safe
[function]
[call site]
05392
get_type_name
[function]
[call site]
05393
hts_log
[function]
[call site]
05394
bcf_dec_typed_int1_safe
[function]
[call site]
05395
bcf_record_check_err
[function]
[call site]
05396
bcf_seqname_safe
[function]
[call site]
05397
bcf_dec_size_safe
[function]
[call site]
05398
bcf_record_check_err
[function]
[call site]
05399
updatephasing
[function]
[call site]
05400
bcf_seqname_safe
[function]
[call site]
05401
hts_log
[function]
[call site]
05402
get_rlen
[function]
[call site]
05403
bcf_seqname_safe
[function]
[call site]
05404
hts_log
[function]
[call site]
05405
bcf_seqname_safe
[function]
[call site]
05406
hts_log
[function]
[call site]
05407
bcf_subset_format
[function]
[call site]
05408
hts_realloc_or_die
[function]
[call site]
05409
bcf_unpack_fmt_core1
[function]
[call site]
05410
bcf_write
[function]
[call site]
05411
bcf_hdr_sync
[function]
[call site]
05412
bcf_seqname_safe
[function]
[call site]
05413
hts_log
[function]
[call site]
05414
vcf_write
[function]
[call site]
05415
vcf_format
[function]
[call site]
05416
bcf_seqname
[function]
[call site]
05417
hts_log
[function]
[call site]
05418
__errno_location
[call site]
05419
bcf_unpack
[function]
[call site]
05420
get_hdr_aux
[function]
[call site]
05421
calloc
[call site]
05422
kputs
[function]
[call site]
05423
kputll
[function]
[call site]
05424
kputc_
[function]
[call site]
05425
kputs
[function]
[call site]
05426
kputc_
[function]
[call site]
05427
kputs
[function]
[call site]
05428
kputc_
[function]
[call site]
05429
kputs
[function]
[call site]
05430
kputc_
[function]
[call site]
05431
kputc_
[function]
[call site]
05432
bcf_float_is_missing
[function]
[call site]
05433
kputd
[function]
[call site]
05434
bcf_seqname_safe
[function]
[call site]
05435
hts_log
[function]
[call site]
05436
__errno_location
[call site]
05437
kputc_
[function]
[call site]
05438
strlen
[call site]
05439
kputsn
[function]
[call site]
05440
kputc_
[function]
[call site]
05441
kputc_
[function]
[call site]
05442
bcf_dec_typed_int1
[function]
[call site]
05443
bcf_dec_size
[function]
[call site]
05444
bcf_seqname_safe
[function]
[call site]
05445
hts_log
[function]
[call site]
05446
__errno_location
[call site]
05447
strlen
[call site]
05448
ks_resize
[function]
[call site]
05449
bcf_fmt_array
[function]
[call site]
05450
bcf_float_is_missing
[function]
[call site]
05451
kputc_
[function]
[call site]
05452
kputd
[function]
[call site]
05453
kputc_
[function]
[call site]
05454
kputc_
[function]
[call site]
05455
kputw
[function]
[call site]
05456
kputc_
[function]
[call site]
05457
kputll
[function]
[call site]
05458
bcf_seqname_safe
[function]
[call site]
05459
hts_log
[function]
[call site]
05460
__errno_location
[call site]
05461
kputc_
[function]
[call site]
05462
kputc_
[function]
[call site]
05463
bcf_dec_typed_int1
[function]
[call site]
05464
bcf_dec_size
[function]
[call site]
05465
kputc_
[function]
[call site]
05466
bcf_seqname_safe
[function]
[call site]
05467
hts_log
[function]
[call site]
05468
__errno_location
[call site]
05469
strlen
[call site]
05470
kputsn
[function]
[call site]
05471
kputsn
[function]
[call site]
05472
kputc_
[function]
[call site]
05473
kputc_
[function]
[call site]
05474
bcf_format_gt_v2
[function]
[call site]
05475
le_to_i8
[function]
[call site]
05476
kputc
[function]
[call site]
05477
kputw
[function]
[call site]
05478
le_to_i16
[function]
[call site]
05479
kputc
[function]
[call site]
05480
kputw
[function]
[call site]
05481
le_to_i32
[function]
[call site]
05482
kputc
[function]
[call site]
05483
kputw
[function]
[call site]
05484
kputc
[function]
[call site]
05485
hts_log
[function]
[call site]
05486
get_hdr_aux
[function]
[call site]
05487
kinsert_char
[function]
[call site]
05488
ks_resize
[function]
[call site]
05489
kinsert_char
[function]
[call site]
05490
kinsert_char
[function]
[call site]
05491
hts_log
[function]
[call site]
05492
__errno_location
[call site]
05493
bcf_fmt_array1
[function]
[call site]
05494
kputc_
[function]
[call site]
05495
kputc_
[function]
[call site]
05496
kputw
[function]
[call site]
05497
le_to_i16
[function]
[call site]
05498
kputc_
[function]
[call site]
05499
kputw
[function]
[call site]
05500
le_to_i32
[function]
[call site]
05501
kputc_
[function]
[call site]
05502
kputw
[function]
[call site]
05503
le_to_u32
[function]
[call site]
05504
kputc_
[function]
[call site]
05505
le_to_float
[function]
[call site]
05506
kputd
[function]
[call site]
05507
hts_log
[function]
[call site]
05508
bcf_fmt_array
[function]
[call site]
05509
kputc_
[function]
[call site]
05510
bcf_fmt_array1
[function]
[call site]
05511
bcf_fmt_array
[function]
[call site]
05512
kputc_
[function]
[call site]
05513
kputsn
[function]
[call site]
05514
kputc
[function]
[call site]
05515
bgzf_flush_try
[function]
[call site]
05516
hts_idx_amend_last
[function]
[call site]
05517
bgzf_write
[function]
[call site]
05518
hwrite
[function]
[call site]
05519
bcf_seqname_safe
[function]
[call site]
05520
hts_idx_tbi_name
[function]
[call site]
05521
strlen
[call site]
05522
realloc
[call site]
05523
strcpy
[call site]
05524
le_to_u32
[function]
[call site]
05525
u32_to_le
[function]
[call site]
05526
bgzf_idx_push
[function]
[call site]
05527
bcf_strerror
[function]
[call site]
05528
add_desc_to_buffer
[function]
[call site]
05529
add_desc_to_buffer
[function]
[call site]
05533
bcf_seqname_safe
[function]
[call site]
05534
bcf1_sync
[function]
[call site]
05535
bcf1_sync_id
[function]
[call site]
05536
strcmp
[call site]
05537
strlen
[call site]
05538
bcf_enc_vchar
[function]
[call site]
05539
bcf_enc_size
[function]
[call site]
05540
bcf1_sync_alleles
[function]
[call site]
05541
bcf1_sync_filter
[function]
[call site]
05545
bcf_enc_vint
[function]
[call site]
05546
bcf_enc_vint
[function]
[call site]
05547
bcf1_sync_info
[function]
[call site]
05548
kputsn_
[function]
[call site]
05549
bcf_unpack
[function]
[call site]
05550
bcf1_sync_id
[function]
[call site]
05551
kputsn_
[function]
[call site]
05552
bcf1_sync_alleles
[function]
[call site]
05553
kputsn_
[function]
[call site]
05554
strlen
[call site]
05555
bcf1_sync_filter
[function]
[call site]
05556
kputsn_
[function]
[call site]
05557
bcf_enc_vint
[function]
[call site]
05558
bcf1_sync_info
[function]
[call site]
05559
kputsn_
[function]
[call site]
05560
kputsn_
[function]
[call site]
05561
bcf_seqname_safe
[function]
[call site]
05562
hts_log
[function]
[call site]
05563
u32_to_le
[function]
[call site]
05564
u32_to_le
[function]
[call site]
05565
i32_to_le
[function]
[call site]
05566
u32_to_le
[function]
[call site]
05567
u32_to_le
[function]
[call site]
05568
float_to_le
[function]
[call site]
05569
u16_to_le
[function]
[call site]
05570
u16_to_le
[function]
[call site]
05571
u32_to_le
[function]
[call site]
05572
bgzf_write
[function]
[call site]
05573
bgzf_write
[function]
[call site]
05574
bgzf_write
[function]
[call site]
05575
bgzf_idx_push
[function]
[call site]
05576
bcf_destroy
[function]
[call site]
05577
bcf_empty
[function]
[call site]
05578
bcf_clear
[function]
[call site]
05579
bcf_hdr_destroy
[function]
[call site]
05580
hts_close_or_abort
[function]
[call site]
05581
hts_close
[function]
[call site]
05582
view_vcf
[function]
[call site]
05583