The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 5578 | 0 | EP | call site: 00000 | view_sam |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
realloc
[call site]
00024
__ac_FNV1a_hash_string
[function]
[call site]
00025
strcmp
[call site]
00026
__errno_location
[call site]
00027
strerror
[call site]
00028
hts_log
[function]
[call site]
00029
priority
[function]
[call site]
00030
hfile_add_scheme_handler
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
init_add_plugin
[function]
[call site]
00033
hts_log
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hfile_plugin_init_mem
[function]
[call site]
00037
hfile_add_scheme_handler
[function]
[call site]
00038
init_add_plugin
[function]
[call site]
00039
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00040
hfile_add_scheme_handler
[function]
[call site]
00041
init_add_plugin
[function]
[call site]
00042
hfile_plugin_init_libcurl
[function]
[call site]
00043
hts_version
[function]
[call site]
00044
curl_global_init
[call site]
00045
easy_errno
[function]
[call site]
00046
curl_easy_getinfo
[call site]
00047
curl_easy_getinfo
[call site]
00048
http_status_errno
[function]
[call site]
00049
curl_easy_strerror
[call site]
00050
hts_log
[function]
[call site]
00051
__errno_location
[call site]
00052
curl_share_init
[call site]
00053
curl_global_cleanup
[call site]
00054
__errno_location
[call site]
00055
curl_share_setopt
[call site]
00056
share_lock
[function]
[call site]
00057
pthread_mutex_lock
[call site]
00058
curl_share_setopt
[call site]
00059
share_unlock
[function]
[call site]
00060
pthread_mutex_unlock
[call site]
00061
curl_share_setopt
[call site]
00062
curl_share_cleanup
[call site]
00063
curl_global_cleanup
[call site]
00064
__errno_location
[call site]
00065
getenv
[call site]
00066
strdup
[call site]
00067
kh_init_auth_map
[function]
[call site]
00068
calloc
[call site]
00069
__errno_location
[call site]
00070
kh_destroy_auth_map
[function]
[call site]
00071
curl_share_cleanup
[call site]
00072
curl_global_cleanup
[call site]
00073
__errno_location
[call site]
00074
getenv
[call site]
00075
strcmp
[call site]
00076
getenv
[call site]
00077
atoi
[call site]
00078
getenv
[call site]
00079
atol
[call site]
00080
getenv
[call site]
00081
atol
[call site]
00082
getenv
[call site]
00083
atol
[call site]
00084
getenv
[call site]
00085
atol
[call site]
00086
curl_version_info
[call site]
00087
ksprintf
[function]
[call site]
00088
kvsprintf
[function]
[call site]
00089
kputd
[function]
[call site]
00090
kputsn
[function]
[call site]
00091
__errno_location
[call site]
00092
ks_resize
[function]
[call site]
00093
realloc
[call site]
00094
kputsn
[function]
[call site]
00095
kputc
[function]
[call site]
00096
ks_resize
[function]
[call site]
00097
ks_resize
[function]
[call site]
00098
snprintf
[call site]
00099
kputsn
[function]
[call site]
00100
vsnprintf
[call site]
00101
ks_resize
[function]
[call site]
00102
vsnprintf
[call site]
00103
hfile_add_scheme_handler
[function]
[call site]
00104
init_add_plugin
[function]
[call site]
00105
hfile_plugin_init_gcs
[function]
[call site]
00106
hfile_add_scheme_handler
[function]
[call site]
00107
hfile_add_scheme_handler
[function]
[call site]
00108
hfile_add_scheme_handler
[function]
[call site]
00109
init_add_plugin
[function]
[call site]
00110
hfile_plugin_init_s3
[function]
[call site]
00111
hts_version
[function]
[call site]
00112
curl_global_init
[call site]
00113
curl_share_init
[call site]
00114
curl_global_cleanup
[call site]
00115
__errno_location
[call site]
00116
curl_share_setopt
[call site]
00117
share_lock
[function]
[call site]
00118
pthread_mutex_lock
[call site]
00119
curl_share_setopt
[call site]
00120
share_unlock
[function]
[call site]
00121
pthread_mutex_unlock
[call site]
00122
curl_share_setopt
[call site]
00123
curl_share_cleanup
[call site]
00124
curl_global_cleanup
[call site]
00125
__errno_location
[call site]
00126
curl_version_info
[call site]
00127
ksprintf
[function]
[call site]
00128
hfile_add_scheme_handler
[function]
[call site]
00129
hfile_add_scheme_handler
[function]
[call site]
00130
hfile_add_scheme_handler
[function]
[call site]
00131
atexit
[call site]
00132
hfile_exit
[function]
[call site]
00133
hfile_shutdown
[function]
[call site]
00134
pthread_mutex_lock
[call site]
00135
kh_destroy_scheme_string
[function]
[call site]
00136
pthread_mutex_unlock
[call site]
00137
pthread_mutex_destroy
[call site]
00138
pthread_mutex_unlock
[call site]
00139
pthread_mutex_unlock
[call site]
00140
kh_get_scheme_string
[function]
[call site]
00141
strchr
[call site]
00142
strcmp
[call site]
00143
hopen_fd_stdinout
[function]
[call site]
00144
strchr
[call site]
00145
snprintf
[call site]
00146
hdopen
[function]
[call site]
00147
blksize
[function]
[call site]
00148
fstat
[call site]
00149
hfile_init
[function]
[call site]
00150
strchr
[call site]
00151
posix_memalign
[call site]
00152
strchr
[call site]
00153
hfile_destroy
[function]
[call site]
00154
__errno_location
[call site]
00155
__errno_location
[call site]
00156
strchr
[call site]
00157
strchr
[call site]
00158
hopen_fd
[function]
[call site]
00159
hfile_oflags
[function]
[call site]
00160
open
[call site]
00161
blksize
[function]
[call site]
00162
hfile_init
[function]
[call site]
00163
__errno_location
[call site]
00164
close
[call site]
00165
hfile_destroy
[function]
[call site]
00166
hts_hopen
[function]
[call site]
00167
calloc
[call site]
00168
strdup
[call site]
00169
ed_is_big
[function]
[call site]
00170
strchr
[call site]
00171
strncpy
[call site]
00172
strncpy
[call site]
00173
strchr
[call site]
00174
hts_detect_format2
[function]
[call site]
00175
hpeek
[function]
[call site]
00176
refill_buffer
[function]
[call site]
00177
__errno_location
[call site]
00178
memcmp
[call site]
00179
memcmp
[call site]
00180
decompress_peek_gz
[function]
[call site]
00181
hpeek
[function]
[call site]
00182
inflateInit2_
[call site]
00183
inflate
[call site]
00184
inflateReset
[call site]
00185
inflateEnd
[call site]
00186
memcmp
[call site]
00187
memcmp
[call site]
00188
memcmp
[call site]
00189
memcmp
[call site]
00190
decompress_peek_xz
[function]
[call site]
00191
hpeek
[function]
[call site]
00192
lzma_easy_decoder_memusage
[call site]
00193
lzma_stream_decoder
[call site]
00194
lzma_code
[call site]
00195
lzma_end
[call site]
00196
lzma_end
[call site]
00197
memcmp
[call site]
00198
hpeek
[function]
[call site]
00199
strcmp
[call site]
00200
find_file_extension
[function]
[call site]
00201
strstr
[call site]
00202
strlen
[call site]
00203
tolower_c
[function]
[call site]
00204
memcmp
[call site]
00205
memcmp
[call site]
00206
memcmp
[call site]
00207
memcmp
[call site]
00208
memcmp
[call site]
00209
memcmp
[call site]
00210
memcmp
[call site]
00211
strcmp
[call site]
00212
memcmp
[call site]
00213
parse_version
[function]
[call site]
00214
isdigit_c
[function]
[call site]
00215
__ctype_b_loc
[call site]
00216
isdigit_c
[function]
[call site]
00217
memcmp
[call site]
00218
memcmp
[call site]
00219
memcmp
[call site]
00220
memcmp
[call site]
00221
parse_version
[function]
[call site]
00222
memcmp
[call site]
00223
cmp_nonblank
[function]
[call site]
00224
isspace_c
[function]
[call site]
00225
__ctype_b_loc
[call site]
00226
memcmp
[call site]
00227
is_fastaq
[function]
[call site]
00228
is_fastaq
[function]
[call site]
00232
parse_tabbed_text
[function]
[call site]
00233
isdigit_c
[function]
[call site]
00234
strchr
[call site]
00235
isdigit_c
[function]
[call site]
00236
colmatch
[function]
[call site]
00237
colmatch
[function]
[call site]
00238
strstr
[call site]
00239
colmatch
[function]
[call site]
00240
strstr
[call site]
00241
colmatch
[function]
[call site]
00242
colmatch
[function]
[call site]
00243
is_text_only
[function]
[call site]
00244
__errno_location
[call site]
00245
hopen_htsget_redirect
[function]
[call site]
00246
hfile_init
[function]
[call site]
00247
parse_ga4gh_redirect_json
[function]
[call site]
00248
hts_json_fnext
[function]
[call site]
00249
hgetc
[function]
[call site]
00250
hgetc2
[function]
[call site]
00251
refill_buffer
[function]
[call site]
00252
fscan_string
[function]
[call site]
00253
hgetc
[function]
[call site]
00254
hgetc
[function]
[call site]
00255
kputc
[function]
[call site]
00256
kputc
[function]
[call site]
00257
kputc
[function]
[call site]
00258
kputc
[function]
[call site]
00259
kputc
[function]
[call site]
00260
kputc
[function]
[call site]
00261
hgetc
[function]
[call site]
00262
dehex
[function]
[call site]
00263
hgetc
[function]
[call site]
00264
dehex
[function]
[call site]
00265
hgetc
[function]
[call site]
00266
dehex
[function]
[call site]
00267
hgetc
[function]
[call site]
00268
dehex
[function]
[call site]
00269
encode_utf8
[function]
[call site]
00270
kputsn
[function]
[call site]
00271
kputc
[function]
[call site]
00272
kputsn
[function]
[call site]
00273
kputc
[function]
[call site]
00274
hpeek
[function]
[call site]
00275
strchr
[call site]
00276
hgetc
[function]
[call site]
00277
kputc
[function]
[call site]
00278
token_type
[function]
[call site]
00279
hts_json_fnext
[function]
[call site]
00283
strcmp
[call site]
00284
parse_ga4gh_body_json
[function]
[call site]
00285
hts_json_fnext
[function]
[call site]
00286
hts_json_fnext
[function]
[call site]
00287
strcmp
[call site]
00288
hts_json_fnext
[function]
[call site]
00289
hts_json_fnext
[function]
[call site]
00290
hts_realloc_or_die
[function]
[call site]
00291
__errno_location
[call site]
00292
realloc
[call site]
00293
__errno_location
[call site]
00294
strerror
[call site]
00295
hts_log
[function]
[call site]
00296
exit
[call site]
00297
hts_json_fnext
[function]
[call site]
00298
strcmp
[call site]
00299
hts_json_fnext
[function]
[call site]
00300
ks_release
[function]
[call site]
00301
strcmp
[call site]
00302
hts_json_fnext
[function]
[call site]
00303
hts_json_fnext
[function]
[call site]
00304
hts_json_fnext
[function]
[call site]
00305
kputs
[function]
[call site]
00306
__errno_location
[call site]
00307
strlen
[call site]
00308
kputsn
[function]
[call site]
00309
kputs
[function]
[call site]
00310
hts_realloc_or_die
[function]
[call site]
00311
ks_release
[function]
[call site]
00312
hts_json_fskip_value
[function]
[call site]
00313
skip_value
[function]
[call site]
00314
fnext
[function]
[call site]
00315
hts_json_fnext
[function]
[call site]
00316
strcmp
[call site]
00317
hts_json_fnext
[function]
[call site]
00318
hts_log
[function]
[call site]
00319
hts_json_fskip_value
[function]
[call site]
00320
hts_json_fnext
[function]
[call site]
00321
free_all_parts
[function]
[call site]
00322
free_part
[function]
[call site]
00323
hfile_destroy
[function]
[call site]
00324
__errno_location
[call site]
00325
hclose_abruptly
[function]
[call site]
00326
__errno_location
[call site]
00327
hfile_destroy
[function]
[call site]
00328
__errno_location
[call site]
00329
hts_crypt4gh_redirect
[function]
[call site]
00330
strlen
[call site]
00331
snprintf
[call site]
00332
strchr
[call site]
00333
snprintf
[call site]
00334
hopen
[function]
[call site]
00335
hts_detect_format2
[function]
[call site]
00336
strchr
[call site]
00337
strchr
[call site]
00338
strchr
[call site]
00339
strchr
[call site]
00340
strchr
[call site]
00341
strchr
[call site]
00342
strchr
[call site]
00343
strchr
[call site]
00344
abort
[call site]
00345
format_category
[function]
[call site]
00346
__errno_location
[call site]
00347
bgzf_hopen
[function]
[call site]
00348
strchr
[call site]
00349
bgzf_read_init
[function]
[call site]
00350
hpeek
[function]
[call site]
00351
calloc
[call site]
00352
memcmp
[call site]
00353
memcmp
[call site]
00354
hts_log
[function]
[call site]
00355
razf_info
[function]
[call site]
00356
strcmp
[call site]
00357
hseek
[function]
[call site]
00358
writebuffer_is_nonempty
[function]
[call site]
00359
flush_buffer
[function]
[call site]
00360
__errno_location
[call site]
00361
htell
[function]
[call site]
00362
__errno_location
[call site]
00363
__errno_location
[call site]
00364
__errno_location
[call site]
00365
hread
[function]
[call site]
00366
hread2
[function]
[call site]
00367
__errno_location
[call site]
00368
refill_buffer
[function]
[call site]
00369
ed_is_big
[function]
[call site]
00370
ed_swap_8p
[function]
[call site]
00371
ed_swap_8
[function]
[call site]
00372
hts_log
[function]
[call site]
00373
hts_log
[function]
[call site]
00374
__errno_location
[call site]
00375
kh_init_bgzf_cache
[function]
[call site]
00376
calloc
[call site]
00377
strchr
[call site]
00378
bgzf_write_init
[function]
[call site]
00379
calloc
[call site]
00380
mode2level
[function]
[call site]
00381
strchr
[call site]
00382
strchr
[call site]
00383
calloc
[call site]
00384
deflateInit2_
[call site]
00385
bgzf_zerr
[function]
[call site]
00386
hts_log
[function]
[call site]
00390
__errno_location
[call site]
00391
strerror
[call site]
00392
hts_log
[function]
[call site]
00393
__errno_location
[call site]
00394
ed_is_big
[function]
[call site]
00395
cram_dopen
[function]
[call site]
00396
calloc
[call site]
00397
cram_read_file_def
[function]
[call site]
00398
hread
[function]
[call site]
00399
memcmp
[call site]
00400
hts_log
[function]
[call site]
00401
cram_init_tables
[function]
[call site]
00402
cram_init_varint
[function]
[call site]
00403
cram_read_SAM_hdr
[function]
[call site]
00404
int32_decode
[function]
[call site]
00405
hread
[function]
[call site]
00406
hread
[function]
[call site]
00407
cram_read_container
[function]
[call site]
00408
int32_decode
[function]
[call site]
00409
crc32
[call site]
00410
calloc
[call site]
00411
__errno_location
[call site]
00412
cram_free_container
[function]
[call site]
00413
cram_free_compression_header
[function]
[call site]
00414
kh_destroy_map
[function]
[call site]
00415
cram_free_block
[function]
[call site]
00416
kh_destroy_m_s2i
[function]
[call site]
00417
string_pool_destroy
[function]
[call site]
00418
cram_free_block
[function]
[call site]
00419
cram_free_slice
[function]
[call site]
00420
cram_free_block
[function]
[call site]
00421
cram_free_block
[function]
[call site]
00422
cram_free_block
[function]
[call site]
00423
cram_free_slice_header
[function]
[call site]
00424
cram_free_block
[function]
[call site]
00425
cram_free_block
[function]
[call site]
00426
cram_free_block
[function]
[call site]
00427
cram_free_block
[function]
[call site]
00428
cram_free_block
[function]
[call site]
00429
cram_free_block
[function]
[call site]
00430
string_pool_destroy
[function]
[call site]
00431
kh_destroy_m_s2i
[function]
[call site]
00432
kh_destroy_m_s2i
[function]
[call site]
00433
cram_free_slice
[function]
[call site]
00434
cram_stats_free
[function]
[call site]
00435
kh_destroy_m_i2i
[function]
[call site]
00436
cram_free_block
[function]
[call site]
00437
cram_free_block
[function]
[call site]
00438
kh_destroy_m_tagmap
[function]
[call site]
00439
free_bam_list
[function]
[call site]
00440
bam_destroy1
[function]
[call site]
00441
bam_get_mempolicy
[function]
[call site]
00442
bam_get_mempolicy
[function]
[call site]
00443
bam_get_mempolicy
[function]
[call site]
00444
__errno_location
[call site]
00445
cram_free_container
[function]
[call site]
00446
cram_free_container
[function]
[call site]
00447
int32_decode
[function]
[call site]
00448
cram_free_container
[function]
[call site]
00449
hts_log
[function]
[call site]
00450
cram_free_container
[function]
[call site]
00451
cram_free_container
[function]
[call site]
00452
cram_read_block
[function]
[call site]
00453
hgetc
[function]
[call site]
00454
hts_log
[function]
[call site]
00455
crc32
[call site]
00456
hgetc
[function]
[call site]
00457
crc32
[call site]
00458
hread
[function]
[call site]
00459
hread
[function]
[call site]
00460
int32_decode
[function]
[call site]
00461
cram_free_container
[function]
[call site]
00462
cram_uncompress_block
[function]
[call site]
00463
crc32
[call site]
00464
hts_log
[function]
[call site]
00465
__assert_fail
[call site]
00466
zlib_mem_inflate
[function]
[call site]
00467
inflateInit2_
[call site]
00468
hts_log
[function]
[call site]
00469
inflate
[call site]
00470
hts_log
[function]
[call site]
00471
inflateEnd
[call site]
00472
realloc
[call site]
00473
inflateEnd
[call site]
00474
inflateEnd
[call site]
00475
BZ2_bzBuffToBuffDecompress
[call site]
00476
lzma_mem_inflate
[function]
[call site]
00477
lzma_easy_decoder_memusage
[call site]
00478
lzma_stream_decoder
[call site]
00479
realloc
[call site]
00480
lzma_code
[call site]
00481
hts_log
[function]
[call site]
00482
lzma_code
[call site]
00483
hts_log
[function]
[call site]
00484
realloc
[call site]
00485
lzma_end
[call site]
00486
lzma_end
[call site]
00487
rans_uncompress
[function]
[call site]
00488
rans_uncompress_O1
[function]
[call site]
00489
htscodecs_tls_calloc
[function]
[call site]
00490
htscodecs_tls_alloc
[function]
[call site]
00491
pthread_once
[call site]
00492
htscodecs_tls_init
[function]
[call site]
00493
pthread_key_create
[call site]
00494
htscodecs_tls_free_all
[function]
[call site]
00495
fprintf
[call site]
00496
strerror
[call site]
00497
fprintf
[call site]
00498
pthread_getspecific
[call site]
00499
calloc
[call site]
00500
pthread_setspecific
[call site]
00501
fprintf
[call site]
00502
calloc
[call site]
00503
RansDecSymbolInit32
[function]
[call site]
00504
__assert_fail
[call site]
00505
__assert_fail
[call site]
00506
RansDecInit
[function]
[call site]
00507
RansDecInit
[function]
[call site]
00508
RansDecInit
[function]
[call site]
00509
RansDecInit
[function]
[call site]
00510
RansDecAdvanceStep
[function]
[call site]
00511
RansDecAdvanceStep
[function]
[call site]
00512
RansDecAdvanceStep
[function]
[call site]
00513
RansDecAdvanceStep
[function]
[call site]
00514
RansDecRenorm2
[function]
[call site]
00515
RansDecRenorm2
[function]
[call site]
00516
RansDecRenormSafe
[function]
[call site]
00517
RansDecRenormSafe
[function]
[call site]
00518
RansDecRenormSafe
[function]
[call site]
00519
RansDecRenormSafe
[function]
[call site]
00520
RansDecGet
[function]
[call site]
00521
RansDecRenormSafe
[function]
[call site]
00522
htscodecs_tls_free
[function]
[call site]
00523
rans_uncompress_O0
[function]
[call site]
00527
RansDecInit
[function]
[call site]
00528
RansDecInit
[function]
[call site]
00529
RansDecInit
[function]
[call site]
00530
RansDecInit
[function]
[call site]
00531
RansDecRenorm2
[function]
[call site]
00532
RansDecRenorm2
[function]
[call site]
00533
RansDecRenormSafe
[function]
[call site]
00534
RansDecRenormSafe
[function]
[call site]
00535
RansDecRenormSafe
[function]
[call site]
00536
RansDecRenormSafe
[function]
[call site]
00537
fqz_decompress
[function]
[call site]
00538
uncompress_block_fqz2f
[function]
[call site]
00539
var_get_u32
[function]
[call site]
00540
fqz_read_parameters
[function]
[call site]
00541
read_array
[function]
[call site]
00542
fqz_read_parameters1
[function]
[call site]
00543
read_array
[function]
[call site]
00544
read_array
[function]
[call site]
00545
read_array
[function]
[call site]
00546
fqz_free_parameters
[function]
[call site]
00547
fqz_create_models
[function]
[call site]
00548
htscodecs_tls_alloc
[function]
[call site]
00549
SIMPLE_MODEL256_init
[function]
[call site]
00550
SIMPLE_MODEL256_init
[function]
[call site]
00551
SIMPLE_MODEL2_init
[function]
[call site]
00552
SIMPLE_MODEL2_init
[function]
[call site]
00553
SIMPLE_MODEL256_init
[function]
[call site]
00554
RC_SetInput
[function]
[call site]
00555
RC_StartDecode
[function]
[call site]
00556
realloc
[call site]
00557
realloc
[call site]
00558
decompress_new_read
[function]
[call site]
00559
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00560
RC_GetFreq
[function]
[call site]
00561
RC_Decode
[function]
[call site]
00562
SIMPLE_MODEL256_normalize
[function]
[call site]
00563
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00564
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00565
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00566
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00567
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00568
SIMPLE_MODEL2_normalize
[function]
[call site]
00569
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00570
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00571
fqz_update_ctx
[function]
[call site]
00572
realloc
[call site]
00573
realloc
[call site]
00574
RC_FinishDecode
[function]
[call site]
00575
fqz_destroy_models
[function]
[call site]
00576
htscodecs_tls_free
[function]
[call site]
00577
fqz_free_parameters
[function]
[call site]
00578
fqz_destroy_models
[function]
[call site]
00579
fqz_free_parameters
[function]
[call site]
00580
rans_uncompress_4x16
[function]
[call site]
00581
rans_uncompress_to_4x16
[function]
[call site]
00582
var_get_u32
[function]
[call site]
00583
var_get_u32
[function]
[call site]
00584
rans_uncompress_to_4x16
[function]
[call site]
00585
unstripe
[function]
[call site]
00586
var_get_u32
[function]
[call site]
00587
hts_unpack_meta
[function]
[call site]
00588
var_get_u32
[function]
[call site]
00589
var_get_u32
[function]
[call site]
00590
var_get_u32
[function]
[call site]
00591
var_get_u32
[function]
[call site]
00592
rans_dec_func
[function]
[call site]
00593
pthread_once
[call site]
00594
htscodecs_tls_cpu_init
[function]
[call site]
00595
__get_cpuid_max
[function]
[call site]
00596
not_ancient_darwin
[function]
[call site]
00597
strerror
[call site]
00598
fprintf
[call site]
00599
fprintf
[call site]
00600
rans_dec_func
[function]
[call site]
00601
hts_rle_decode
[function]
[call site]
00602
var_get_u32
[function]
[call site]
00603
hts_unpack
[function]
[call site]
00604
arith_uncompress_to
[function]
[call site]
00605
var_get_u32
[function]
[call site]
00606
var_get_u32
[function]
[call site]
00607
arith_uncompress_to
[function]
[call site]
00608
unstripe
[function]
[call site]
00609
var_get_u32
[function]
[call site]
00610
hts_unpack_meta
[function]
[call site]
00611
var_get_u32
[function]
[call site]
00612
BZ2_bzBuffToBuffDecompress
[call site]
00613
arith_uncompress_O1_RLE
[function]
[call site]
00614
htscodecs_tls_alloc
[function]
[call site]
00615
SIMPLE_MODEL256_init
[function]
[call site]
00616
htscodecs_tls_alloc
[function]
[call site]
00617
htscodecs_tls_free
[function]
[call site]
00618
SIMPLE_MODEL258_init
[function]
[call site]
00619
RC_SetInput
[function]
[call site]
00620
RC_StartDecode
[function]
[call site]
00621
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00622
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00623
SIMPLE_MODEL258_normalize
[function]
[call site]
00624
RC_FinishDecode
[function]
[call site]
00625
htscodecs_tls_free
[function]
[call site]
00626
htscodecs_tls_free
[function]
[call site]
00627
htscodecs_tls_free
[function]
[call site]
00628
htscodecs_tls_free
[function]
[call site]
00629
arith_uncompress_O0_RLE
[function]
[call site]
00630
SIMPLE_MODEL256_init
[function]
[call site]
00631
htscodecs_tls_alloc
[function]
[call site]
00632
SIMPLE_MODEL258_init
[function]
[call site]
00633
RC_SetInput
[function]
[call site]
00634
RC_StartDecode
[function]
[call site]
00635
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00636
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00637
RC_FinishDecode
[function]
[call site]
00638
htscodecs_tls_free
[function]
[call site]
00639
htscodecs_tls_free
[function]
[call site]
00640
arith_uncompress_O1
[function]
[call site]
00641
htscodecs_tls_alloc
[function]
[call site]
00642
SIMPLE_MODEL256_init
[function]
[call site]
00643
RC_SetInput
[function]
[call site]
00644
RC_StartDecode
[function]
[call site]
00645
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00646
RC_FinishDecode
[function]
[call site]
00647
htscodecs_tls_free
[function]
[call site]
00648
htscodecs_tls_free
[function]
[call site]
00649
arith_uncompress_O0
[function]
[call site]
00650
SIMPLE_MODEL256_init
[function]
[call site]
00651
RC_SetInput
[function]
[call site]
00652
RC_StartDecode
[function]
[call site]
00653
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00654
RC_FinishDecode
[function]
[call site]
00655
hts_unpack
[function]
[call site]
00656
tok3_decode_names
[function]
[call site]
00657
create_context
[function]
[call site]
00658
fprintf
[call site]
00659
htscodecs_tls_alloc
[function]
[call site]
00660
uncompressed_size
[function]
[call site]
00661
var_get_u32
[function]
[call site]
00662
var_get_u32
[function]
[call site]
00663
uncompress
[function]
[call site]
00664
var_get_u32
[function]
[call site]
00665
arith_decode
[function]
[call site]
00666
var_get_u32
[function]
[call site]
00667
arith_uncompress_to
[function]
[call site]
00668
rans_decode
[function]
[call site]
00669
var_get_u32
[function]
[call site]
00670
rans_uncompress_to_4x16
[function]
[call site]
00671
decode_name
[function]
[call site]
00672
decode_token_type
[function]
[call site]
00673
decode_token_int
[function]
[call site]
00674
strlen
[call site]
00675
strcpy
[call site]
00676
strlen
[call site]
00677
decode_token_type
[function]
[call site]
00678
decode_token_char
[function]
[call site]
00679
decode_token_alpha
[function]
[call site]
00680
decode_token_int1
[function]
[call site]
00681
decode_token_int
[function]
[call site]
00682
append_uint32_fixed
[function]
[call site]
00683
decode_token_int1
[function]
[call site]
00684
append_uint32_fixed
[function]
[call site]
00685
decode_token_int
[function]
[call site]
00686
append_uint32_var
[function]
[call site]
00687
decode_token_int1
[function]
[call site]
00688
append_uint32_var
[function]
[call site]
00689
append_uint32_var
[function]
[call site]
00690
append_uint32_fixed
[function]
[call site]
00691
realloc
[call site]
00692
free_context
[function]
[call site]
00693
pool_destroy
[function]
[call site]
00694
htscodecs_tls_free
[function]
[call site]
00695
free_context
[function]
[call site]
00696
cram_free_container
[function]
[call site]
00697
cram_free_block
[function]
[call site]
00698
int32_get_blk
[function]
[call site]
00699
cram_free_container
[function]
[call site]
00700
cram_free_block
[function]
[call site]
00701
cram_free_container
[function]
[call site]
00702
cram_free_block
[function]
[call site]
00703
cram_free_block
[function]
[call site]
00704
cram_read_block
[function]
[call site]
00705
cram_free_container
[function]
[call site]
00706
cram_free_block
[function]
[call site]
00707
cram_free_container
[function]
[call site]
00708
hread
[function]
[call site]
00709
cram_free_container
[function]
[call site]
00710
cram_free_container
[function]
[call site]
00711
sam_hdr_init
[function]
[call site]
00712
calloc
[call site]
00713
sam_hdr_add_lines
[function]
[call site]
00714
sam_hdr_fill_hrecs
[function]
[call site]
00715
sam_hrecs_new
[function]
[call site]
00716
calloc
[call site]
00717
kh_init_sam_hrecs_t
[function]
[call site]
00718
calloc
[call site]
00719
kh_init_m_s2i
[function]
[call site]
00720
calloc
[call site]
00721
kh_init_m_s2i
[function]
[call site]
00722
kh_init_m_s2i
[function]
[call site]
00723
pool_create
[function]
[call site]
00724
next_power_2
[function]
[call site]
00725
pool_create
[function]
[call site]
00726
string_pool_create
[function]
[call site]
00727
sam_hrecs_init_type_order
[function]
[call site]
00728
calloc
[call site]
00729
kh_destroy_sam_hrecs_t
[function]
[call site]
00730
pool_destroy
[function]
[call site]
00731
pool_destroy
[function]
[call site]
00732
string_pool_destroy
[function]
[call site]
00733
sam_hrecs_refs_from_targets_array
[function]
[call site]
00734
hts_log
[function]
[call site]
00735
realloc
[call site]
00736
kh_grow_to_fit_m_s2i
[function]
[call site]
00737
kh_resize_m_s2i
[function]
[call site]
00738
realloc
[call site]
00739
__ac_FNV1a_hash_string
[function]
[call site]
00740
string_dup
[function]
[call site]
00741
strlen
[call site]
00742
string_ndup
[function]
[call site]
00743
string_alloc
[function]
[call site]
00744
new_string_pool
[function]
[call site]
00745
realloc
[call site]
00746
kh_get_s2i
[function]
[call site]
00747
__ac_FNV1a_hash_string
[function]
[call site]
00748
strcmp
[call site]
00749
kh_put_m_s2i
[function]
[call site]
00750
strcmp
[call site]
00751
hts_log
[function]
[call site]
00752
__errno_location
[call site]
00753
strerror
[call site]
00754
hts_log
[function]
[call site]
00755
kh_get_m_s2i
[function]
[call site]
00756
kh_del_m_s2i
[function]
[call site]
00757
sam_hrecs_free
[function]
[call site]
00758
kh_destroy_sam_hrecs_t
[function]
[call site]
00759
kh_destroy_m_s2i
[function]
[call site]
00760
kh_destroy_m_s2i
[function]
[call site]
00761
kh_destroy_m_s2i
[function]
[call site]
00762
pool_destroy
[function]
[call site]
00763
pool_destroy
[function]
[call site]
00764
string_pool_destroy
[function]
[call site]
00765
sam_hrecs_parse_lines
[function]
[call site]
00766
strlen
[call site]
00767
sam_hrecs_error
[function]
[call site]
00768
hts_log
[function]
[call site]
00769
sam_hrecs_parse_single_line
[function]
[call site]
00770
sam_hrecs_error
[function]
[call site]
00771
isalpha_c
[function]
[call site]
00772
__ctype_b_loc
[call site]
00773
sam_hrecs_error
[function]
[call site]
00774
TYPEKEY
[function]
[call site]
00775
pool_alloc
[function]
[call site]
00776
new_pool
[function]
[call site]
00777
realloc
[call site]
00778
kh_put_sam_hrecs_t
[function]
[call site]
00779
kh_resize_sam_hrecs_t
[function]
[call site]
00780
realloc
[call site]
00781
TYPEKEY
[function]
[call site]
00782
parse_comment_line
[function]
[call site]
00783
sam_hrecs_error
[function]
[call site]
00784
warn_if_known_stderr
[function]
[call site]
00785
kmemmem
[function]
[call site]
00786
boyer_moore
[function]
[call site]
00787
memchr
[call site]
00788
ksBM_prep
[function]
[call site]
00789
calloc
[call site]
00790
calloc
[call site]
00791
karp_rabin
[function]
[call site]
00792
fast_exp
[function]
[call site]
00793
memcmp
[call site]
00794
known_stderr
[function]
[call site]
00795
hts_log
[function]
[call site]
00796
hts_log
[function]
[call site]
00797
kmemmem
[function]
[call site]
00798
known_stderr
[function]
[call site]
00799
kmemmem
[function]
[call site]
00800
known_stderr
[function]
[call site]
00801
pool_alloc
[function]
[call site]
00802
string_ndup
[function]
[call site]
00803
parse_noncomment_line
[function]
[call site]
00804
TYPEKEY
[function]
[call site]
00805
sam_hrecs_error
[function]
[call site]
00806
warn_if_known_stderr
[function]
[call site]
00807
sam_hrecs_error
[function]
[call site]
00808
warn_if_known_stderr
[function]
[call site]
00809
pool_alloc
[function]
[call site]
00810
string_ndup
[function]
[call site]
00811
sam_hrecs_global_list_add
[function]
[call site]
00812
TYPEKEY
[function]
[call site]
00813
__assert_fail
[call site]
00814
sam_hrecs_free_tags
[function]
[call site]
00815
sam_hrecs_free_tags
[function]
[call site]
00816
pool_free
[function]
[call site]
00817
pool_free
[function]
[call site]
00818
TYPEKEY
[function]
[call site]
00819
kh_grow_to_fit_m_s2i
[function]
[call site]
00820
realloc
[call site]
00821
sam_hrecs_update_hashes
[function]
[call site]
00822
TYPEKEY
[function]
[call site]
00823
__assert_fail
[call site]
00824
__assert_fail
[call site]
00825
strtoll
[call site]
00826
__assert_fail
[call site]
00827
hts_log
[function]
[call site]
00828
hts_log
[function]
[call site]
00829
hts_log
[function]
[call site]
00830
kh_get_m_s2i
[function]
[call site]
00831
snprintf
[call site]
00832
sam_hrecs_update
[function]
[call site]
00833
sam_hrecs_vupdate
[function]
[call site]
00834
sam_hrecs_find_key
[function]
[call site]
00835
pool_alloc
[function]
[call site]
00836
strlen
[call site]
00837
string_alloc
[function]
[call site]
00838
snprintf
[call site]
00839
sam_hrecs_add_ref_altnames
[function]
[call site]
00840
kstrtok
[function]
[call site]
00841
strchr
[call site]
00842
strlen
[call site]
00843
string_ndup
[function]
[call site]
00844
kh_put_m_s2i
[function]
[call site]
00845
hts_log
[function]
[call site]
00846
strcmp
[call site]
00847
sam_hrecs_add_ref_altnames
[function]
[call site]
00848
strcmp
[call site]
00849
hts_log
[function]
[call site]
00850
hts_log
[function]
[call site]
00851
realloc
[call site]
00852
kh_put_m_s2i
[function]
[call site]
00853
sam_hrecs_add_ref_altnames
[function]
[call site]
00854
TYPEKEY
[function]
[call site]
00855
sam_hrecs_find_key
[function]
[call site]
00856
hts_log
[function]
[call site]
00857
__assert_fail
[call site]
00858
kh_get_m_s2i
[function]
[call site]
00859
__assert_fail
[call site]
00860
hts_log
[function]
[call site]
00861
realloc
[call site]
00862
kh_put_m_s2i
[function]
[call site]
00863
TYPEKEY
[function]
[call site]
00864
realloc
[call site]
00865
__assert_fail
[call site]
00866
hts_log
[function]
[call site]
00867
kh_get_m_s2i
[function]
[call site]
00868
kh_put_m_s2i
[function]
[call site]
00869
realloc
[call site]
00870
sam_hrecs_free
[function]
[call site]
00871
add_stub_ref_sq_lines
[function]
[call site]
00872
snprintf
[call site]
00873
sam_hrecs_add
[function]
[call site]
00874
sam_hrecs_vadd
[function]
[call site]
00875
TYPEKEY
[function]
[call site]
00876
strncmp
[call site]
00877
sam_hrecs_find_type_id
[function]
[call site]
00878
kh_get_m_s2i
[function]
[call site]
00879
kh_get_m_s2i
[function]
[call site]
00880
kh_get_m_s2i
[function]
[call site]
00881
TYPEKEY
[function]
[call site]
00882
kh_get_sam_hrecs_t
[function]
[call site]
00883
sam_hrecs_vupdate
[function]
[call site]
00884
pool_alloc
[function]
[call site]
00885
kh_put_sam_hrecs_t
[function]
[call site]
00886
__assert_fail
[call site]
00887
sam_hrecs_global_list_add
[function]
[call site]
00888
__assert_fail
[call site]
00889
__assert_fail
[call site]
00890
__assert_fail
[call site]
00891
__assert_fail
[call site]
00892
strncmp
[call site]
00893
pool_alloc
[function]
[call site]
00894
strncmp
[call site]
00895
strlen
[call site]
00896
string_alloc
[function]
[call site]
00897
snprintf
[call site]
00898
strlen
[call site]
00899
string_ndup
[function]
[call site]
00900
strncmp
[call site]
00901
pool_alloc
[function]
[call site]
00902
strncmp
[call site]
00903
strlen
[call site]
00904
string_alloc
[function]
[call site]
00905
snprintf
[call site]
00906
strlen
[call site]
00907
string_ndup
[function]
[call site]
00908
TYPEKEY
[function]
[call site]
00909
sam_hrecs_update_hashes
[function]
[call site]
00910
strncmp
[call site]
00911
hts_log
[function]
[call site]
00912
sam_hrecs_free
[function]
[call site]
00913
rebuild_target_arrays
[function]
[call site]
00914
sam_hdr_update_target_arrays
[function]
[call site]
00915
realloc
[call site]
00916
realloc
[call site]
00917
strcmp
[call site]
00918
strdup
[call site]
00919
kh_get_s2i
[function]
[call site]
00920
kh_del_s2i
[function]
[call site]
00921
kh_init_s2i
[function]
[call site]
00922
calloc
[call site]
00923
kh_put_s2i
[function]
[call site]
00924
kh_resize_s2i
[function]
[call site]
00925
realloc
[call site]
00926
kh_get_s2i
[function]
[call site]
00927
kh_del_s2i
[function]
[call site]
00928
sam_hrecs_parse_lines
[function]
[call site]
00929
rebuild_target_arrays
[function]
[call site]
00930
redact_header_text
[function]
[call site]
00931
__assert_fail
[call site]
00932
sam_hdr_destroy
[function]
[call site]
00933
sam_hrecs_free
[function]
[call site]
00934
kh_destroy_s2i
[function]
[call site]
00935
cram_free_file_def
[function]
[call site]
00936
calloc
[call site]
00937
strncpy
[call site]
00938
cram_init_tables
[function]
[call site]
00939
strrchr
[call site]
00940
strdup
[call site]
00941
refs_create
[function]
[call site]
00942
calloc
[call site]
00943
string_pool_create
[function]
[call site]
00944
kh_init_refs
[function]
[call site]
00945
calloc
[call site]
00946
pthread_mutex_init
[call site]
00947
refs_free
[function]
[call site]
00948
string_pool_destroy
[function]
[call site]
00949
ref_entry_free_seq
[function]
[call site]
00950
mfclose
[function]
[call site]
00951
mfflush
[function]
[call site]
00952
fwrite
[call site]
00953
fflush
[call site]
00954
fseek
[call site]
00955
fwrite
[call site]
00956
fflush
[call site]
00957
ftell
[call site]
00958
fileno
[call site]
00959
ftell
[call site]
00960
ftruncate
[call site]
00961
munmap
[call site]
00962
fclose
[call site]
00963
mfdestroy
[function]
[call site]
00964
kh_destroy_refs
[function]
[call site]
00965
bgzf_close
[function]
[call site]
00966
bgzf_flush
[function]
[call site]
00967
mt_queue
[function]
[call site]
00968
pthread_mutex_lock
[call site]
00969
pool_alloc
[function]
[call site]
00970
pthread_mutex_unlock
[call site]
00971
hts_tpool_dispatch3
[function]
[call site]
00972
pthread_mutex_lock
[call site]
00973
pthread_mutex_unlock
[call site]
00974
__errno_location
[call site]
00975
pthread_mutex_unlock
[call site]
00976
pthread_cond_wait
[call site]
00977
pthread_mutex_unlock
[call site]
00978
wake_next_worker
[function]
[call site]
00979
pthread_mutex_lock
[call site]
00980
__assert_fail
[call site]
00981
__assert_fail
[call site]
00982
pthread_cond_signal
[call site]
00983
pthread_mutex_unlock
[call site]
00984
pthread_mutex_unlock
[call site]
00985
bgzf_encode_level0_func
[function]
[call site]
00986
u16_to_le
[function]
[call site]
00987
u16_to_le
[function]
[call site]
00988
u16_to_le
[function]
[call site]
00989
hts_crc32
[function]
[call site]
00990
crc32
[call site]
00991
u32_to_le
[function]
[call site]
00992
u32_to_le
[function]
[call site]
00993
job_cleanup
[function]
[call site]
00994
pthread_mutex_lock
[call site]
00995
pool_free
[function]
[call site]
00996
pthread_mutex_unlock
[call site]
00997
hts_tpool_dispatch3
[function]
[call site]
00998
bgzf_encode_func
[function]
[call site]
00999
bgzf_compress
[function]
[call site]
01000
u16_to_le
[function]
[call site]
01001
u16_to_le
[function]
[call site]
01002
deflateInit2_
[call site]
01003
bgzf_zerr
[function]
[call site]
01004
hts_log
[function]
[call site]
01005
deflate
[call site]
01006
deflateEnd
[call site]
01007
bgzf_zerr
[function]
[call site]
01008
hts_log
[function]
[call site]
01009
deflateEnd
[call site]
01010
deflateEnd
[call site]
01011
bgzf_zerr
[function]
[call site]
01012
hts_log
[function]
[call site]
01013
packInt16
[function]
[call site]
01014
crc32
[call site]
01015
packInt32
[function]
[call site]
01016
packInt32
[function]
[call site]
01017
job_cleanup
[function]
[call site]
01018
job_cleanup
[function]
[call site]
01019
pthread_mutex_lock
[call site]
01020
pthread_mutex_unlock
[call site]
01021
mt_flush_queue
[function]
[call site]
01022
pthread_mutex_lock
[call site]
01023
hts_tpool_process_is_shutdown
[function]
[call site]
01024
pthread_mutex_lock
[call site]
01025
pthread_mutex_unlock
[call site]
01026
pthread_mutex_unlock
[call site]
01027
hts_usleep
[function]
[call site]
01028
nanosleep
[call site]
01029
pthread_mutex_lock
[call site]
01030
pthread_mutex_unlock
[call site]
01031
hts_tpool_process_flush
[function]
[call site]
01032
pthread_mutex_lock
[call site]
01033
pthread_cond_signal
[call site]
01034
pthread_cond_wait
[call site]
01035
gettimeofday
[call site]
01036
pthread_cond_timedwait
[call site]
01037
gettimeofday
[call site]
01038
pthread_cond_timedwait
[call site]
01039
pthread_mutex_unlock
[call site]
01040
pthread_mutex_lock
[call site]
01041
pthread_mutex_unlock
[call site]
01042
hflush
[function]
[call site]
01043
flush_buffer
[function]
[call site]
01044
__errno_location
[call site]
01045
bgzf_index_add_block
[function]
[call site]
01046
realloc
[call site]
01047
deflate_block
[function]
[call site]
01048
bgzf_compress
[function]
[call site]
01049
bgzf_gzip_compress
[function]
[call site]
01050
deflate
[call site]
01051
bgzf_zerr
[function]
[call site]
01052
hts_log
[function]
[call site]
01053
hts_log
[function]
[call site]
01054
hts_log
[function]
[call site]
01055
bgzf_zerr
[function]
[call site]
01056
hts_log
[function]
[call site]
01057
hwrite
[function]
[call site]
01058
hfile_set_blksize
[function]
[call site]
01059
realloc
[call site]
01060
hwrite2
[function]
[call site]
01061
flush_buffer
[function]
[call site]
01062
__errno_location
[call site]
01063
hwrite2
[function]
[call site]
01064
hts_log
[function]
[call site]
01065
bgzf_close_mt
[function]
[call site]
01066
mt_destroy
[function]
[call site]
01067
pthread_mutex_lock
[call site]
01068
pthread_cond_signal
[call site]
01069
hts_tpool_wake_dispatch
[function]
[call site]
01070
pthread_mutex_lock
[call site]
01071
pthread_cond_signal
[call site]
01072
pthread_mutex_unlock
[call site]
01073
pthread_mutex_unlock
[call site]
01074
hts_tpool_process_is_shutdown
[function]
[call site]
01075
hts_tpool_process_destroy
[function]
[call site]
01076
pthread_mutex_lock
[call site]
01077
pthread_mutex_unlock
[call site]
01078
hts_tpool_process_reset
[function]
[call site]
01079
pthread_mutex_lock
[call site]
01080
pthread_mutex_unlock
[call site]
01081
hts_tpool_delete_result
[function]
[call site]
01082
hts_tpool_process_flush
[function]
[call site]
01083
pthread_mutex_lock
[call site]
01084
pthread_cond_signal
[call site]
01085
pthread_mutex_unlock
[call site]
01086
hts_tpool_delete_result
[function]
[call site]
01087
pthread_mutex_lock
[call site]
01088
hts_tpool_process_detach_locked
[function]
[call site]
01089
hts_tpool_process_shutdown_locked
[function]
[call site]
01090
pthread_cond_broadcast
[call site]
01091
pthread_cond_broadcast
[call site]
01092
pthread_cond_broadcast
[call site]
01093
pthread_cond_broadcast
[call site]
01094
pthread_mutex_unlock
[call site]
01095
pthread_cond_destroy
[call site]
01096
pthread_cond_destroy
[call site]
01097
pthread_cond_destroy
[call site]
01098
pthread_cond_destroy
[call site]
01099
pthread_mutex_unlock
[call site]
01100
pthread_join
[call site]
01101
pthread_mutex_destroy
[call site]
01102
pthread_mutex_destroy
[call site]
01103
pthread_mutex_destroy
[call site]
01104
pthread_cond_destroy
[call site]
01105
pool_free
[function]
[call site]
01106
hts_tpool_destroy
[function]
[call site]
01107
pthread_mutex_lock
[call site]
01108
pthread_cond_signal
[call site]
01109
pthread_mutex_unlock
[call site]
01110
pthread_join
[call site]
01111
pthread_mutex_destroy
[call site]
01112
pthread_cond_destroy
[call site]
01113
pool_destroy
[function]
[call site]
01114
fflush
[call site]
01115
deflate_block
[function]
[call site]
01116
bgzf_zerr
[function]
[call site]
01117
hts_log
[function]
[call site]
01118
bgzf_close_mt
[function]
[call site]
01119
hwrite
[function]
[call site]
01120
hflush
[function]
[call site]
01121
hts_log
[function]
[call site]
01122
bgzf_close_mt
[function]
[call site]
01123
inflateEnd
[call site]
01124
deflateEnd
[call site]
01125
bgzf_zerr
[function]
[call site]
01126
hts_log
[function]
[call site]
01127
hclose
[function]
[call site]
01128
writebuffer_is_nonempty
[function]
[call site]
01129
hflush
[function]
[call site]
01130
__errno_location
[call site]
01131
hfile_destroy
[function]
[call site]
01132
__errno_location
[call site]
01133
bgzf_index_destroy
[function]
[call site]
01134
free_cache
[function]
[call site]
01135
kh_destroy_bgzf_cache
[function]
[call site]
01136
bgzf_clear_private_data
[function]
[call site]
01137
__assert_fail
[call site]
01138
pthread_mutex_destroy
[call site]
01139
pthread_mutex_init
[call site]
01140
pthread_mutex_init
[call site]
01141
pthread_mutex_init
[call site]
01142
pthread_mutex_init
[call site]
01143
cram_new_metrics
[function]
[call site]
01144
calloc
[call site]
01145
kh_init_m_metrics
[function]
[call site]
01146
calloc
[call site]
01147
refs_from_header
[function]
[call site]
01148
sam_hdr_fill_hrecs
[function]
[call site]
01149
realloc
[call site]
01150
kh_get_refs
[function]
[call site]
01151
__ac_FNV1a_hash_string
[function]
[call site]
01152
strcmp
[call site]
01153
calloc
[call site]
01154
string_dup
[function]
[call site]
01155
sam_hrecs_find_type_id
[function]
[call site]
01156
sam_hrecs_find_key
[function]
[call site]
01157
string_dup
[function]
[call site]
01158
sam_hrecs_find_key
[function]
[call site]
01159
strtoll
[call site]
01160
kh_put_refs
[function]
[call site]
01161
kh_resize_refs
[function]
[call site]
01162
realloc
[call site]
01163
cram_set_option
[function]
[call site]
01164
cram_set_voption
[function]
[call site]
01165
__errno_location
[call site]
01166
strdup
[call site]
01167
refs_free
[function]
[call site]
01168
cram_seek_to_refpos
[function]
[call site]
01169
cram_index_query
[function]
[call site]
01170
cram_seek
[function]
[call site]
01171
cram_drain_rqueue
[function]
[call site]
01172
hts_tpool_process_empty
[function]
[call site]
01173
pthread_mutex_lock
[call site]
01174
pthread_mutex_unlock
[call site]
01175
hts_tpool_next_result_wait
[function]
[call site]
01176
pthread_mutex_lock
[call site]
01177
hts_tpool_next_result_locked
[function]
[call site]
01178
pthread_cond_signal
[call site]
01179
wake_next_worker
[function]
[call site]
01180
gettimeofday
[call site]
01181
pthread_mutex_unlock
[call site]
01182
hts_tpool_process_destroy
[function]
[call site]
01183
pthread_cond_timedwait
[call site]
01184
pthread_mutex_unlock
[call site]
01185
hts_tpool_result_data
[function]
[call site]
01186
cram_free_container
[function]
[call site]
01187
cram_free_slice
[function]
[call site]
01188
hts_tpool_delete_result
[function]
[call site]
01189
cram_free_container
[function]
[call site]
01190
cram_free_slice
[function]
[call site]
01191
cram_free_container
[function]
[call site]
01192
hseek
[function]
[call site]
01193
pthread_mutex_lock
[call site]
01194
pthread_mutex_unlock
[call site]
01195
cram_free_container
[function]
[call site]
01196
cram_free_container
[function]
[call site]
01197
pthread_mutex_lock
[call site]
01198
pthread_mutex_unlock
[call site]
01199
pthread_mutex_lock
[call site]
01200
pthread_mutex_unlock
[call site]
01201
pthread_mutex_lock
[call site]
01202
pthread_mutex_unlock
[call site]
01203
cram_load_reference
[function]
[call site]
01204
refs_load_fai
[function]
[call site]
01205
strlen
[call site]
01206
refs_create
[function]
[call site]
01207
bgzf_close
[function]
[call site]
01208
strstr
[call site]
01209
string_ndup
[function]
[call site]
01210
snprintf
[call site]
01211
strcmp
[call site]
01212
string_ndup
[function]
[call site]
01213
snprintf
[call site]
01214
string_dup
[function]
[call site]
01215
snprintf
[call site]
01216
bgzf_open_ref
[function]
[call site]
01217
strncmp
[call site]
01218
hisremote
[function]
[call site]
01219
find_scheme_handler
[function]
[call site]
01220
snprintf
[call site]
01221
access
[call site]
01222
fai_build
[function]
[call site]
01223
fai_build3
[function]
[call site]
01224
fai_build3_core
[function]
[call site]
01225
bgzf_open
[function]
[call site]
01226
strchr
[call site]
01227
hopen
[function]
[call site]
01228
bgzf_read_init
[function]
[call site]
01229
hclose_abruptly
[function]
[call site]
01230
strchr
[call site]
01231
hopen
[function]
[call site]
01232
bgzf_write_init
[function]
[call site]
01233
__errno_location
[call site]
01234
ed_is_big
[function]
[call site]
01235
__errno_location
[call site]
01236
strerror
[call site]
01237
hts_log
[function]
[call site]
01238
bgzf_index_build_init
[function]
[call site]
01239
bgzf_index_destroy
[function]
[call site]
01240
calloc
[call site]
01241
hts_log
[function]
[call site]
01242
fai_build_core
[function]
[call site]
01243
calloc
[call site]
01244
kh_init_s
[function]
[call site]
01245
calloc
[call site]
01246
bgzf_getc_
[function]
[call site]
01247
bgzf_getc
[function]
[call site]
01248
bgzf_read_block
[function]
[call site]
01249
hts_tpool_next_result_wait
[function]
[call site]
01250
hts_tpool_result_data
[function]
[call site]
01251
mt_destroy
[function]
[call site]
01252
hts_tpool_delete_result
[function]
[call site]
01253
hts_log
[function]
[call site]
01254
hts_tpool_delete_result
[function]
[call site]
01255
hts_log
[function]
[call site]
01256
hts_tpool_delete_result
[function]
[call site]
01257
bgzf_index_add_block
[function]
[call site]
01258
pthread_mutex_lock
[call site]
01259
pool_free
[function]
[call site]
01260
pthread_mutex_unlock
[call site]
01261
hts_tpool_delete_result
[function]
[call site]
01262
bgzf_htell
[function]
[call site]
01263
pthread_mutex_lock
[call site]
01264
pthread_mutex_unlock
[call site]
01265
htell
[function]
[call site]
01266
hread
[function]
[call site]
01267
__errno_location
[call site]
01268
strerror
[call site]
01269
hts_log
[function]
[call site]
01270
inflate_gzip_block
[function]
[call site]
01271
hread
[function]
[call site]
01272
inflate
[call site]
01273
bgzf_zerr
[function]
[call site]
01274
hts_log
[function]
[call site]
01275
hpeek
[function]
[call site]
01276
inflateReset
[call site]
01277
bgzf_zerr
[function]
[call site]
01278
hts_log
[function]
[call site]
01279
hts_log
[function]
[call site]
01280
hts_log
[function]
[call site]
01281
load_block_from_cache
[function]
[call site]
01282
kh_get_bgzf_cache
[function]
[call site]
01283
hseek
[function]
[call site]
01284
hts_log
[function]
[call site]
01285
exit
[call site]
01286
hread
[function]
[call site]
01287
hts_log
[function]
[call site]
01288
check_header
[function]
[call site]
01289
unpackInt16
[function]
[call site]
01290
unpackInt16
[function]
[call site]
01291
hts_log
[function]
[call site]
01292
hread
[function]
[call site]
01293
calloc
[call site]
01294
inflateInit2_
[call site]
01295
bgzf_zerr
[function]
[call site]
01296
hts_log
[function]
[call site]
01297
inflate_gzip_block
[function]
[call site]
01298
hts_log
[function]
[call site]
01299
unpackInt16
[function]
[call site]
01300
hts_log
[function]
[call site]
01301
hread
[function]
[call site]
01302
hts_log
[function]
[call site]
01303
inflate_block
[function]
[call site]
01304
le_to_u32
[function]
[call site]
01305
bgzf_uncompress
[function]
[call site]
01306
inflateInit2_
[call site]
01307
bgzf_zerr
[function]
[call site]
01308
hts_log
[function]
[call site]
01309
inflate
[call site]
01310
bgzf_zerr
[function]
[call site]
01311
inflateEnd
[call site]
01312
bgzf_zerr
[function]
[call site]
01313
hts_log
[function]
[call site]
01314
inflateEnd
[call site]
01315
bgzf_zerr
[function]
[call site]
01316
hts_log
[function]
[call site]
01317
crc32
[call site]
01318
hts_log
[function]
[call site]
01319
bgzf_zerr
[function]
[call site]
01320
hts_log
[function]
[call site]
01321
bgzf_htell
[function]
[call site]
01322
bgzf_index_add_block
[function]
[call site]
01323
cache_block
[function]
[call site]
01324
kh_del_bgzf_cache
[function]
[call site]
01325
kh_put_bgzf_cache
[function]
[call site]
01326
kh_resize_bgzf_cache
[function]
[call site]
01327
realloc
[call site]
01328
bgzf_htell
[function]
[call site]
01329
hts_log
[function]
[call site]
01330
hts_log
[function]
[call site]
01331
bgzf_getc_
[function]
[call site]
01332
hts_log
[function]
[call site]
01333
__ctype_b_loc
[call site]
01334
hts_log
[function]
[call site]
01335
fai_insert_index
[function]
[call site]
01336
hts_log
[function]
[call site]
01337
strdup
[call site]
01338
kh_put_s
[function]
[call site]
01339
kh_resize_s
[function]
[call site]
01340
realloc
[call site]
01341
__ac_FNV1a_hash_string
[function]
[call site]
01342
strcmp
[call site]
01343
hts_log
[function]
[call site]
01344
realloc
[call site]
01345
hts_log
[function]
[call site]
01346
__ctype_b_loc
[call site]
01347
kputc
[function]
[call site]
01348
bgzf_getc_
[function]
[call site]
01349
kputsn
[function]
[call site]
01350
hts_log
[function]
[call site]
01351
bgzf_getc_
[function]
[call site]
01352
bgzf_utell
[function]
[call site]
01353
bgzf_getc_
[function]
[call site]
01354
bgzf_utell
[function]
[call site]
01355
hts_log
[function]
[call site]
01356
isgraph_
[function]
[call site]
01357
bgzf_getc_
[function]
[call site]
01358
hts_log
[function]
[call site]
01359
bgzf_getc_
[function]
[call site]
01360
bgzf_utell
[function]
[call site]
01361
hts_log
[function]
[call site]
01362
hts_log
[function]
[call site]
01363
isgraph_
[function]
[call site]
01364
bgzf_getc_
[function]
[call site]
01365
hts_log
[function]
[call site]
01366
hts_log
[function]
[call site]
01367
hts_log
[function]
[call site]
01368
fai_insert_index
[function]
[call site]
01369
hts_log
[function]
[call site]
01370
fai_destroy
[function]
[call site]
01371
kh_destroy_s
[function]
[call site]
01372
bgzf_close
[function]
[call site]
01373
hts_log
[function]
[call site]
01374
ksprintf
[function]
[call site]
01375
ksprintf
[function]
[call site]
01376
bgzf_index_dump
[function]
[call site]
01377
hts_log
[function]
[call site]
01378
__errno_location
[call site]
01379
get_name_suffix
[function]
[call site]
01380
strlen
[call site]
01381
snprintf
[call site]
01382
hopen
[function]
[call site]
01383
bgzf_index_dump_hfile
[function]
[call site]
01384
hts_log
[function]
[call site]
01385
__errno_location
[call site]
01386
bgzf_flush
[function]
[call site]
01387
hwrite_uint64
[function]
[call site]
01388
ed_is_big
[function]
[call site]
01389
ed_swap_8
[function]
[call site]
01390
hwrite
[function]
[call site]
01391
hwrite_uint64
[function]
[call site]
01392
hwrite_uint64
[function]
[call site]
01393
__errno_location
[call site]
01394
strerror
[call site]
01395
hts_log
[function]
[call site]
01396
hclose
[function]
[call site]
01397
__errno_location
[call site]
01398
strerror
[call site]
01399
hts_log
[function]
[call site]
01400
hclose_abruptly
[function]
[call site]
01401
hts_log
[function]
[call site]
01402
bgzf_close
[function]
[call site]
01403
__errno_location
[call site]
01404
strerror
[call site]
01405
hts_log
[function]
[call site]
01406
hopen
[function]
[call site]
01407
__errno_location
[call site]
01408
strerror
[call site]
01409
hts_log
[function]
[call site]
01410
fai_save
[function]
[call site]
01411
kh_get_s
[function]
[call site]
01412
__assert_fail
[call site]
01413
snprintf
[call site]
01414
snprintf
[call site]
01415
hputs
[function]
[call site]
01416
strlen
[call site]
01417
hputs2
[function]
[call site]
01418
hwrite2
[function]
[call site]
01419
hputs
[function]
[call site]
01420
__errno_location
[call site]
01421
strerror
[call site]
01422
hts_log
[function]
[call site]
01423
hclose
[function]
[call site]
01424
__errno_location
[call site]
01425
strerror
[call site]
01426
hts_log
[function]
[call site]
01427
fai_destroy
[function]
[call site]
01428
__errno_location
[call site]
01429
bgzf_close
[function]
[call site]
01430
fai_destroy
[function]
[call site]
01431
__errno_location
[call site]
01432
bgzf_open
[function]
[call site]
01433
perror
[call site]
01434
bgzf_index_load
[function]
[call site]
01435
get_name_suffix
[function]
[call site]
01436
hopen
[function]
[call site]
01437
bgzf_index_load_hfile
[function]
[call site]
01438
calloc
[call site]
01439
hread_uint64
[function]
[call site]
01440
hread
[function]
[call site]
01441
ed_is_big
[function]
[call site]
01442
ed_swap_8p
[function]
[call site]
01443
hread_uint64
[function]
[call site]
01444
hread_uint64
[function]
[call site]
01445
__errno_location
[call site]
01446
strerror
[call site]
01447
hts_log
[function]
[call site]
01448
hclose
[function]
[call site]
01449
__errno_location
[call site]
01450
strerror
[call site]
01451
hts_log
[function]
[call site]
01452
hclose_abruptly
[function]
[call site]
01453
hts_log
[function]
[call site]
01454
bgzf_close
[function]
[call site]
01455
hts_log
[function]
[call site]
01456
hopen
[function]
[call site]
01457
hts_log
[function]
[call site]
01458
perror
[call site]
01459
hgets
[function]
[call site]
01460
__errno_location
[call site]
01461
hgetln
[function]
[call site]
01462
hgetdelim
[function]
[call site]
01463
__errno_location
[call site]
01464
writebuffer_is_nonempty
[function]
[call site]
01465
__errno_location
[call site]
01466
memchr
[call site]
01467
refill_buffer
[function]
[call site]
01468
isspace_c
[function]
[call site]
01469
string_dup
[function]
[call site]
01470
isspace_c
[function]
[call site]
01471
strtoll
[call site]
01472
isspace_c
[function]
[call site]
01473
strtoll
[call site]
01474
isspace_c
[function]
[call site]
01475
strtol
[call site]
01476
isspace_c
[function]
[call site]
01477
strtol
[call site]
01478
kh_put_refs
[function]
[call site]
01479
realloc
[call site]
01480
hclose
[function]
[call site]
01481
hclose_abruptly
[function]
[call site]
01482
refs_free
[function]
[call site]
01483
sanitise_SQ_lines
[function]
[call site]
01484
kh_get_refs
[function]
[call site]
01485
strcmp
[call site]
01486
__assert_fail
[call site]
01487
hts_log
[function]
[call site]
01488
refs_free
[function]
[call site]
01489
refs_create
[function]
[call site]
01490
refs_from_header
[function]
[call site]
01491
refs2id
[function]
[call site]
01492
calloc
[call site]
01493
kh_get_refs
[function]
[call site]
01494
hts_log
[function]
[call site]
01495
__isoc99_sscanf
[call site]
01496
hts_log
[function]
[call site]
01497
hts_log
[function]
[call site]
01498
__errno_location
[call site]
01499
hts_log
[function]
[call site]
01500
cram_init_tables
[function]
[call site]
01501
hts_tpool_init
[function]
[call site]
01502
pthread_mutexattr_init
[call site]
01503
pthread_mutexattr_settype
[call site]
01504
pthread_mutex_init
[call site]
01505
pthread_mutexattr_destroy
[call site]
01506
pthread_mutex_lock
[call site]
01507
pthread_attr_init
[call site]
01508
pthread_attr_getstacksize
[call site]
01509
pthread_attr_setstacksize
[call site]
01510
pthread_cond_init
[call site]
01511
pthread_create
[call site]
01512
tpool_worker
[function]
[call site]
01513
pthread_mutex_lock
[call site]
01514
__assert_fail
[call site]
01515
pthread_cond_wait
[call site]
01516
__assert_fail
[call site]
01517
pthread_cond_broadcast
[call site]
01518
pthread_cond_signal
[call site]
01519
pthread_mutex_unlock
[call site]
01520
hts_tpool_add_result
[function]
[call site]
01521
pthread_mutex_lock
[call site]
01522
pthread_cond_signal
[call site]
01523
pthread_mutex_unlock
[call site]
01524
pthread_mutex_unlock
[call site]
01525
hts_tpool_process_shutdown
[function]
[call site]
01526
pthread_mutex_lock
[call site]
01527
hts_tpool_process_shutdown_locked
[function]
[call site]
01528
pthread_mutex_unlock
[call site]
01529
__assert_fail
[call site]
01530
pthread_cond_broadcast
[call site]
01531
pthread_mutex_unlock
[call site]
01532
pthread_mutex_lock
[call site]
01533
hts_tpool_process_destroy
[function]
[call site]
01534
pthread_mutex_unlock
[call site]
01535
pthread_mutex_lock
[call site]
01536
hts_tpool_process_shutdown_locked
[function]
[call site]
01537
pthread_mutex_unlock
[call site]
01538
pthread_mutex_unlock
[call site]
01539
pthread_attr_destroy
[call site]
01540
__errno_location
[call site]
01541
__errno_location
[call site]
01542
strerror
[call site]
01543
hts_log
[function]
[call site]
01544
pthread_mutex_unlock
[call site]
01545
pthread_join
[call site]
01546
pthread_cond_destroy
[call site]
01547
pthread_mutex_destroy
[call site]
01548
pthread_attr_destroy
[call site]
01549
__errno_location
[call site]
01550
hts_tpool_process_init
[function]
[call site]
01551
pthread_cond_init
[call site]
01552
pthread_cond_init
[call site]
01553
pthread_cond_init
[call site]
01554
pthread_cond_init
[call site]
01555
hts_tpool_process_attach
[function]
[call site]
01556
pthread_mutex_lock
[call site]
01557
__assert_fail
[call site]
01558
pthread_mutex_unlock
[call site]
01559
hts_tpool_size
[function]
[call site]
01560
hts_tpool_process_init
[function]
[call site]
01561
hts_log
[function]
[call site]
01562
__errno_location
[call site]
01563
bgzf_hopen
[function]
[call site]
01564
__errno_location
[call site]
01565
hts_process_opts
[function]
[call site]
01566
hts_parse_opt_list
[function]
[call site]
01567
strncpy
[call site]
01568
hts_opt_add
[function]
[call site]
01569
strdup
[call site]
01570
strchr
[call site]
01571
strcmp
[call site]
01572
strcmp
[call site]
01573
atoi
[call site]
01574
strcmp
[call site]
01575
strcmp
[call site]
01576
atoi
[call site]
01577
strcmp
[call site]
01578
strcmp
[call site]
01579
atoi
[call site]
01580
strcmp
[call site]
01581
strcmp
[call site]
01582
atoi
[call site]
01583
strcmp
[call site]
01584
strcmp
[call site]
01585
atoi
[call site]
01586
strcmp
[call site]
01587
strcmp
[call site]
01588
atoi
[call site]
01589
strcmp
[call site]
01590
strcmp
[call site]
01591
atoi
[call site]
01592
strcmp
[call site]
01593
strcmp
[call site]
01594
atoi
[call site]
01595
strcmp
[call site]
01596
strcmp
[call site]
01597
atoi
[call site]
01598
strcmp
[call site]
01599
strcmp
[call site]
01600
atoi
[call site]
01601
strcmp
[call site]
01602
strcmp
[call site]
01603
atoi
[call site]
01604
strcmp
[call site]
01605
strcmp
[call site]
01606
atoi
[call site]
01607
strcmp
[call site]
01608
strcmp
[call site]
01609
atoi
[call site]
01610
strcmp
[call site]
01611
strcmp
[call site]
01612
atoi
[call site]
01613
strcmp
[call site]
01614
atoi
[call site]
01615
strcmp
[call site]
01616
strcmp
[call site]
01617
strcmp
[call site]
01618
strcmp
[call site]
01619
strcmp
[call site]
01620
strcmp
[call site]
01621
strcmp
[call site]
01622
strcmp
[call site]
01623
strcmp
[call site]
01624
strcmp
[call site]
01625
strcmp
[call site]
01626
strcmp
[call site]
01627
strcmp
[call site]
01628
strcmp
[call site]
01629
atoi
[call site]
01630
strcmp
[call site]
01631
strcmp
[call site]
01632
atoi
[call site]
01633
strcmp
[call site]
01634
strcmp
[call site]
01635
strtol
[call site]
01636
hts_log
[function]
[call site]
01637
strcmp
[call site]
01638
strcmp
[call site]
01639
strtol
[call site]
01640
strcmp
[call site]
01641
strcmp
[call site]
01642
strtol
[call site]
01643
strcmp
[call site]
01644
strcmp
[call site]
01645
strcmp
[call site]
01646
strcmp
[call site]
01647
atoi
[call site]
01648
strcmp
[call site]
01649
strcmp
[call site]
01650
atoi
[call site]
01651
strcmp
[call site]
01652
strcmp
[call site]
01653
strtol
[call site]
01654
strcmp
[call site]
01655
strcmp
[call site]
01656
strtol
[call site]
01657
strcmp
[call site]
01658
strcmp
[call site]
01659
strcmp
[call site]
01660
strcmp
[call site]
01661
strcmp
[call site]
01662
strcmp
[call site]
01663
strcmp
[call site]
01664
strcmp
[call site]
01665
strcmp
[call site]
01666
strcmp
[call site]
01667
strcmp
[call site]
01668
strcmp
[call site]
01669
strcmp
[call site]
01670
strcmp
[call site]
01671
strcmp
[call site]
01672
strcmp
[call site]
01673
hts_log
[function]
[call site]
01674
hts_opt_apply
[function]
[call site]
01675
strdup
[call site]
01676
hts_set_opt
[function]
[call site]
01677
hts_set_threads
[function]
[call site]
01678
sam_set_threads
[function]
[call site]
01679
hts_tpool_init
[function]
[call site]
01680
sam_set_thread_pool
[function]
[call site]
01681
sam_state_create
[function]
[call site]
01682
calloc
[call site]
01683
pthread_mutex_init
[call site]
01684
pthread_mutex_init
[call site]
01685
pthread_cond_init
[call site]
01686
hts_tpool_size
[function]
[call site]
01687
hts_tpool_process_init
[function]
[call site]
01688
sam_state_destroy
[function]
[call site]
01689
pthread_mutex_lock
[call site]
01690
pthread_cond_signal
[call site]
01691
hts_tpool_wake_dispatch
[function]
[call site]
01692
hts_tpool_wake_dispatch
[function]
[call site]
01693
pthread_mutex_unlock
[call site]
01694
hts_usleep
[function]
[call site]
01695
pthread_mutex_lock
[call site]
01696
pthread_mutex_unlock
[call site]
01697
hts_tpool_dispatch
[function]
[call site]
01698
hts_tpool_dispatch3
[function]
[call site]
01699
sam_format_worker
[function]
[call site]
01700
pthread_mutex_lock
[call site]
01701
pthread_mutex_unlock
[call site]
01702
calloc
[call site]
01703
sam_state_err
[function]
[call site]
01704
pthread_mutex_lock
[call site]
01705
pthread_mutex_unlock
[call site]
01706
sam_format1_append
[function]
[call site]
01707
kputsn_
[function]
[call site]
01708
__errno_location
[call site]
01709
ks_resize
[function]
[call site]
01710
kputc_
[function]
[call site]
01711
ks_resize
[function]
[call site]
01712
kputw
[function]
[call site]
01713
ks_resize
[function]
[call site]
01714
kputuw
[function]
[call site]
01715
ks_resize
[function]
[call site]
01716
ks_resize
[function]
[call site]
01717
kputc_
[function]
[call site]
01718
kputs
[function]
[call site]
01719
kputc_
[function]
[call site]
01720
kputsn_
[function]
[call site]
01721
kputll
[function]
[call site]
01722
ks_resize
[function]
[call site]
01723
kputuw
[function]
[call site]
01724
kputc_
[function]
[call site]
01725
kputw
[function]
[call site]
01726
kputc_
[function]
[call site]
01727
kputw
[function]
[call site]
01728
kputc_
[function]
[call site]
01729
kputc_
[function]
[call site]
01730
kputc_
[function]
[call site]
01731
kputsn_
[function]
[call site]
01732
kputsn_
[function]
[call site]
01733
kputs
[function]
[call site]
01734
kputc_
[function]
[call site]
01735
kputll
[function]
[call site]
01736
kputc_
[function]
[call site]
01737
kputll
[function]
[call site]
01738
kputc_
[function]
[call site]
01739
ks_resize
[function]
[call site]
01740
nibble2base
[function]
[call site]
01741
add33
[function]
[call site]
01742
kputsn_
[function]
[call site]
01743
kputc_
[function]
[call site]
01744
sam_format_aux1
[function]
[call site]
01745
kputsn_
[function]
[call site]
01746
kputc_
[function]
[call site]
01747
kputsn_
[function]
[call site]
01748
kputw
[function]
[call site]
01749
kputsn_
[function]
[call site]
01750
kputw
[function]
[call site]
01751
kputsn_
[function]
[call site]
01752
le_to_u16
[function]
[call site]
01753
kputuw
[function]
[call site]
01754
kputsn_
[function]
[call site]
01755
le_to_i16
[function]
[call site]
01756
le_to_u16
[function]
[call site]
01757
kputw
[function]
[call site]
01758
kputsn_
[function]
[call site]
01759
le_to_u32
[function]
[call site]
01760
kputuw
[function]
[call site]
01761
kputsn_
[function]
[call site]
01762
le_to_i32
[function]
[call site]
01763
le_to_u32
[function]
[call site]
01764
kputw
[function]
[call site]
01765
kputsn_
[function]
[call site]
01766
kputc_
[function]
[call site]
01767
le_to_float
[function]
[call site]
01768
le_to_u32
[function]
[call site]
01769
ksprintf
[function]
[call site]
01770
le_to_double
[function]
[call site]
01771
le_to_u64
[function]
[call site]
01772
ksprintf
[function]
[call site]
01773
kputc_
[function]
[call site]
01774
kputc_
[function]
[call site]
01775
kputc_
[function]
[call site]
01776
kputsn
[function]
[call site]
01777
le_to_u32
[function]
[call site]
01778
kputsn_
[function]
[call site]
01779
kputc
[function]
[call site]
01780
ks_expand
[function]
[call site]
01781
__errno_location
[call site]
01782
ks_resize
[function]
[call site]
01783
kputw
[function]
[call site]
01784
ks_expand
[function]
[call site]
01785
kputuw
[function]
[call site]
01786
ks_expand
[function]
[call site]
01787
le_to_i16
[function]
[call site]
01788
kputw
[function]
[call site]
01789
ks_expand
[function]
[call site]
01790
le_to_u16
[function]
[call site]
01791
kputuw
[function]
[call site]
01792
ks_expand
[function]
[call site]
01793
le_to_i32
[function]
[call site]
01794
kputw
[function]
[call site]
01795
ks_expand
[function]
[call site]
01796
le_to_u32
[function]
[call site]
01797
kputuw
[function]
[call site]
01798
ks_expand
[function]
[call site]
01799
le_to_float
[function]
[call site]
01800
kputd
[function]
[call site]
01801
__errno_location
[call site]
01802
hts_log
[function]
[call site]
01803
__errno_location
[call site]
01804
kputsn
[function]
[call site]
01805
hts_log
[function]
[call site]
01806
__errno_location
[call site]
01807
hts_log
[function]
[call site]
01808
__errno_location
[call site]
01809
__errno_location
[call site]
01810
sam_state_err
[function]
[call site]
01811
kputc
[function]
[call site]
01812
pthread_mutex_lock
[call site]
01813
pthread_mutex_unlock
[call site]
01814
hts_tpool_process_flush
[function]
[call site]
01815
pthread_mutex_lock
[call site]
01816
pthread_mutex_unlock
[call site]
01817
hts_tpool_process_empty
[function]
[call site]
01818
hts_usleep
[function]
[call site]
01819
pthread_mutex_lock
[call site]
01820
hts_tpool_process_is_shutdown
[function]
[call site]
01821
pthread_mutex_unlock
[call site]
01822
hts_tpool_process_shutdown
[function]
[call site]
01823
pthread_join
[call site]
01824
hts_tpool_process_destroy
[function]
[call site]
01825
hts_tpool_destroy
[function]
[call site]
01826
pthread_mutex_destroy
[call site]
01827
pthread_mutex_destroy
[call site]
01828
pthread_cond_destroy
[call site]
01829
sam_free_sp_bams
[function]
[call site]
01830
sam_free_sp_bams
[function]
[call site]
01831
bam_hdr_destroy
[function]
[call site]
01832
sam_hdr_destroy
[function]
[call site]
01833
bgzf_thread_pool
[function]
[call site]
01834
calloc
[call site]
01835
hts_tpool_size
[function]
[call site]
01836
hts_tpool_process_init
[function]
[call site]
01837
hts_tpool_process_ref_incr
[function]
[call site]
01838
pthread_mutex_lock
[call site]
01839
pthread_mutex_unlock
[call site]
01840
pool_create
[function]
[call site]
01841
pthread_mutex_init
[call site]
01842
pthread_mutex_init
[call site]
01843
pthread_mutex_init
[call site]
01844
pthread_cond_init
[call site]
01845
pthread_create
[call site]
01846
hts_tpool_destroy
[function]
[call site]
01847
hts_get_bgzfp
[function]
[call site]
01848
bgzf_mt
[function]
[call site]
01849
hts_tpool_init
[function]
[call site]
01850
bgzf_thread_pool
[function]
[call site]
01851
hts_tpool_destroy
[function]
[call site]
01852
hts_set_opt
[function]
[call site]
01853
hts_hfile
[function]
[call site]
01854
bgzf_hfile
[function]
[call site]
01855
cram_hfile
[function]
[call site]
01856
bgzf_hfile
[function]
[call site]
01857
hfile_set_blksize
[function]
[call site]
01858
hts_log
[function]
[call site]
01859
hts_log
[function]
[call site]
01860
hts_set_thread_pool
[function]
[call site]
01861
sam_set_thread_pool
[function]
[call site]
01862
hts_get_bgzfp
[function]
[call site]
01863
bgzf_thread_pool
[function]
[call site]
01864
hts_set_opt
[function]
[call site]
01865
hts_set_cache_size
[function]
[call site]
01866
hts_get_bgzfp
[function]
[call site]
01867
bgzf_set_cache_size
[function]
[call site]
01868
fastq_state_set
[function]
[call site]
01869
fastq_state_init
[function]
[call site]
01870
strcmp
[call site]
01874
kh_init_tag
[function]
[call site]
01875
calloc
[call site]
01876
strlen
[call site]
01877
hts_log
[function]
[call site]
01878
kh_put_tag
[function]
[call site]
01879
kh_resize_tag
[function]
[call site]
01880
realloc
[call site]
01881
strncpy
[call site]
01882
strcmp
[call site]
01883
__ctype_b_loc
[call site]
01884
isalnum_c
[function]
[call site]
01885
strncpy
[call site]
01886
hts_log
[function]
[call site]
01887
regfree
[call site]
01888
regcomp
[call site]
01889
hts_log
[function]
[call site]
01890
fastq_state_set
[function]
[call site]
01891
fastq_state_set
[function]
[call site]
01892
cram_set_option
[function]
[call site]
01893
hts_set_filter_expression
[function]
[call site]
01894
hts_filter_free
[function]
[call site]
01895
regfree
[call site]
01896
hts_filter_init
[function]
[call site]
01897
cram_set_voption
[function]
[call site]
01901
hts_set_opt
[function]
[call site]
01902
hts_opt_free
[function]
[call site]
01903
hts_opt_free
[function]
[call site]
01904
hclose_abruptly
[function]
[call site]
01905
hts_log
[function]
[call site]
01906
hclose_abruptly
[function]
[call site]
01907
hclose
[function]
[call site]
01908
abort
[call site]
01909
hts_close
[function]
[call site]
01910
__errno_location
[call site]
01911
bgzf_close
[function]
[call site]
01912
cram_eof
[function]
[call site]
01913
hts_log
[function]
[call site]
01914
cram_close
[function]
[call site]
01915
cram_update_curr_slice
[function]
[call site]
01916
cram_flush_container_mt
[function]
[call site]
01917
pthread_mutex_lock
[call site]
01918
reset_metrics
[function]
[call site]
01919
pthread_mutex_unlock
[call site]
01920
hts_tpool_process_flush
[function]
[call site]
01921
pthread_mutex_lock
[call site]
01922
pthread_mutex_unlock
[call site]
01923
cram_flush_container
[function]
[call site]
01924
cram_encode_container
[function]
[call site]
01925
pthread_mutex_lock
[call site]
01926
hts_log
[function]
[call site]
01927
hts_log
[function]
[call site]
01928
pthread_mutex_unlock
[call site]
01929
pthread_mutex_lock
[call site]
01930
pthread_mutex_unlock
[call site]
01931
cram_get_ref
[function]
[call site]
01932
pthread_mutex_lock
[call site]
01933
hts_log
[function]
[call site]
01934
pthread_mutex_unlock
[call site]
01935
pthread_mutex_lock
[call site]
01936
hts_log
[function]
[call site]
01937
cram_populate_ref
[function]
[call site]
01938
getenv
[call site]
01939
getenv
[call site]
01940
hts_log
[function]
[call site]
01941
sam_hrecs_find_type_id
[function]
[call site]
01942
sam_hrecs_find_key
[function]
[call site]
01943
hts_log
[function]
[call site]
01944
expand_cache_path
[function]
[call site]
01945
strchr
[call site]
01946
strncpy
[call site]
01947
strlen
[call site]
01948
strcpy
[call site]
01949
strtol
[call site]
01950
strlen
[call site]
01951
strncpy
[call site]
01952
strlen
[call site]
01953
strcpy
[call site]
01954
strlen
[call site]
01955
strcpy
[call site]
01956
stat
[call site]
01957
stat
[call site]
01958
bgzf_open
[function]
[call site]
01959
string_dup
[function]
[call site]
01960
bgzf_close
[function]
[call site]
01961
open_path_mfile
[function]
[call site]
01962
getenv
[call site]
01963
tokenise_search_path
[function]
[call site]
01964
strlen
[call site]
01965
strncmp
[call site]
01966
strncmp
[call site]
01967
strncmp
[call site]
01968
strncmp
[call site]
01969
strncmp
[call site]
01970
strncmp
[call site]
01971
strncmp
[call site]
01972
strncmp
[call site]
01973
strncmp
[call site]
01974
strncmp
[call site]
01975
find_file_url
[function]
[call site]
01976
expand_path
[function]
[call site]
01977
strlen
[call site]
01978
strlen
[call site]
01979
hts_log
[function]
[call site]
01980
strchr
[call site]
01981
strtol
[call site]
01982
hopen
[function]
[call site]
01983
__errno_location
[call site]
01984
__errno_location
[call site]
01985
strerror
[call site]
01986
hts_log
[function]
[call site]
01987
mfcreate
[function]
[call site]
01988
hread
[function]
[call site]
01989
mfwrite
[function]
[call site]
01990
realloc
[call site]
01991
hclose_abruptly
[function]
[call site]
01992
hclose
[function]
[call site]
01993
__errno_location
[call site]
01994
strerror
[call site]
01995
hts_log
[function]
[call site]
01996
mrewind
[function]
[call site]
01997
mfdestroy
[function]
[call site]
01998
strncmp
[call site]
01999
hisremote
[function]
[call site]
02000
find_file_url
[function]
[call site]
02001
find_file_dir
[function]
[call site]
02002
expand_path
[function]
[call site]
02003
is_file
[function]
[call site]
02004
stat
[call site]
02005
mfopen
[function]
[call site]
02006
fopen
[call site]
02007
mfreopen
[function]
[call site]
02008
strchr
[call site]
02009
strchr
[call site]
02010
strchr
[call site]
02011
strchr
[call site]
02012
strchr
[call site]
02013
strchr
[call site]
02014
strchr
[call site]
02015
mfcreate
[function]
[call site]
02016
mfmmap
[function]
[call site]
02017
mfload
[function]
[call site]
02021
stat
[call site]
02022
realloc
[call site]
02023
fread
[call site]
02024
feof
[call site]
02025
fseek
[call site]
02026
mfcreate
[function]
[call site]
02027
hts_log
[function]
[call site]
02028
fseek
[call site]
02029
strlen
[call site]
02030
strcpy
[call site]
02031
strrchr
[call site]
02032
find_file_dir
[function]
[call site]
02033
mfsteal
[function]
[call site]
02034
mfdetach
[function]
[call site]
02035
mfflush
[function]
[call site]
02036
fclose
[call site]
02037
mfdestroy
[function]
[call site]
02038
sam_hrecs_find_key
[function]
[call site]
02039
strstr
[call site]
02040
strncmp
[call site]
02041
hts_log
[function]
[call site]
02042
strncmp
[call site]
02043
bgzf_close
[function]
[call site]
02044
refs_load_fai
[function]
[call site]
02045
sanitise_SQ_lines
[function]
[call site]
02046
bgzf_close
[function]
[call site]
02047
refs2id
[function]
[call site]
02048
expand_cache_path
[function]
[call site]
02049
hts_log
[function]
[call site]
02050
mkdir_prefix
[function]
[call site]
02051
strrchr
[call site]
02052
is_directory
[function]
[call site]
02053
stat
[call site]
02054
mkdir
[call site]
02055
chmod
[call site]
02056
mkdir_prefix
[function]
[call site]
02057
mkdir
[call site]
02058
chmod
[call site]
02059
hts_open_tmpfile
[function]
[call site]
02060
getpid
[call site]
02061
time
[call site]
02062
clock
[call site]
02063
ks_clear
[function]
[call site]
02064
ksprintf
[function]
[call site]
02065
hopen
[function]
[call site]
02066
__errno_location
[call site]
02067
perror
[call site]
02068
hts_md5_init
[function]
[call site]
02069
hts_md5_reset
[function]
[call site]
02070
hclose_abruptly
[function]
[call site]
02071
unlink
[call site]
02072
hts_md5_update
[function]
[call site]
02073
body
[function]
[call site]
02074
body
[function]
[call site]
02075
hts_md5_final
[function]
[call site]
02076
body
[function]
[call site]
02077
body
[function]
[call site]
02078
hts_md5_destroy
[function]
[call site]
02079
hts_md5_hex
[function]
[call site]
02080
strncmp
[call site]
02081
hts_log
[function]
[call site]
02082
hclose_abruptly
[function]
[call site]
02083
unlink
[call site]
02084
hwrite
[function]
[call site]
02085
hclose
[function]
[call site]
02086
chmod
[call site]
02087
rename
[call site]
02088
__errno_location
[call site]
02089
strerror
[call site]
02090
hts_log
[function]
[call site]
02091
unlink
[call site]
02092
hts_log
[function]
[call site]
02093
hts_log
[function]
[call site]
02094
pthread_mutex_unlock
[call site]
02095
pthread_mutex_unlock
[call site]
02096
cram_ref_incr_locked
[function]
[call site]
02097
cram_ref_incr_locked
[function]
[call site]
02098
cram_ref_load
[function]
[call site]
02099
__assert_fail
[call site]
02100
__assert_fail
[call site]
02101
ref_entry_free_seq
[function]
[call site]
02102
strcmp
[call site]
02103
bgzf_close
[function]
[call site]
02104
bgzf_open_ref
[function]
[call site]
02105
load_ref_portion
[function]
[call site]
02106
bgzf_useek
[function]
[call site]
02107
hseek
[function]
[call site]
02108
bgzf_read_block
[function]
[call site]
02109
bgzf_seek_common
[function]
[call site]
02110
pthread_mutex_lock
[call site]
02111
pthread_cond_signal
[call site]
02112
hts_tpool_wake_dispatch
[function]
[call site]
02113
pthread_cond_wait
[call site]
02114
pthread_cond_signal
[call site]
02115
abort
[call site]
02116
__errno_location
[call site]
02117
pthread_mutex_unlock
[call site]
02118
pthread_mutex_unlock
[call site]
02119
hseek
[function]
[call site]
02120
bgzf_read_block
[function]
[call site]
02121
__assert_fail
[call site]
02122
perror
[call site]
02123
bgzf_read
[function]
[call site]
02124
__assert_fail
[call site]
02125
bgzf_read_block
[function]
[call site]
02126
hts_log
[function]
[call site]
02127
bgzf_htell
[function]
[call site]
02128
hts_log
[function]
[call site]
02129
bgzf_htell
[function]
[call site]
02130
perror
[call site]
02131
isspace_c
[function]
[call site]
02132
isspace_c
[function]
[call site]
02133
isspace_c
[function]
[call site]
02134
hts_log
[function]
[call site]
02135
toupper_c
[function]
[call site]
02136
toupper
[call site]
02137
pthread_mutex_unlock
[call site]
02138
pthread_mutex_unlock
[call site]
02139
cram_ref_incr_locked
[function]
[call site]
02140
pthread_mutex_unlock
[call site]
02141
pthread_mutex_unlock
[call site]
02142
pthread_mutex_unlock
[call site]
02143
pthread_mutex_unlock
[call site]
02144
strcmp
[call site]
02145
bgzf_close
[function]
[call site]
02146
bgzf_open_ref
[function]
[call site]
02147
pthread_mutex_unlock
[call site]
02148
pthread_mutex_unlock
[call site]
02149
load_ref_portion
[function]
[call site]
02150
pthread_mutex_unlock
[call site]
02151
pthread_mutex_unlock
[call site]
02152
pthread_mutex_unlock
[call site]
02153
pthread_mutex_unlock
[call site]
02154
hts_log
[function]
[call site]
02155
hts_log
[function]
[call site]
02156
pthread_mutex_lock
[call site]
02157
pthread_mutex_unlock
[call site]
02158
hts_log
[function]
[call site]
02159
hts_log
[function]
[call site]
02160
hts_log
[function]
[call site]
02161
hts_log
[function]
[call site]
02162
pthread_mutex_lock
[call site]
02163
pthread_mutex_unlock
[call site]
02164
validate_md5
[function]
[call site]
02165
sam_hrecs_find_type_id
[function]
[call site]
02166
sam_hrecs_find_key
[function]
[call site]
02167
hts_md5_init
[function]
[call site]
02168
hts_md5_update
[function]
[call site]
02169
hts_md5_final
[function]
[call site]
02170
hts_md5_destroy
[function]
[call site]
02171
hts_md5_hex
[function]
[call site]
02172
strcmp
[call site]
02173
hts_log
[function]
[call site]
02174
hts_log
[function]
[call site]
02175
cram_ref_incr
[function]
[call site]
02176
pthread_mutex_lock
[call site]
02177
cram_ref_incr_locked
[function]
[call site]
02178
pthread_mutex_unlock
[call site]
02179
cram_get_ref
[function]
[call site]
02180
validate_md5
[function]
[call site]
02181
hts_log
[function]
[call site]
02182
__assert_fail
[call site]
02183
lossy_read_names
[function]
[call site]
02184
kh_init_m_s2u64
[function]
[call site]
02185
calloc
[call site]
02186
expected_template_count
[function]
[call site]
02187
bam_aux_get
[function]
[call site]
02188
bam_aux_first
[function]
[call site]
02189
__errno_location
[call site]
02190
skip_aux
[function]
[call site]
02191
aux_type2size
[function]
[call site]
02192
memchr
[call site]
02193
aux_type2size
[function]
[call site]
02194
le_to_u32
[function]
[call site]
02195
bam_aux_next
[function]
[call site]
02196
skip_aux
[function]
[call site]
02197
__errno_location
[call site]
02198
hts_log
[function]
[call site]
02199
__errno_location
[call site]
02200
hts_log
[function]
[call site]
02201
__errno_location
[call site]
02202
bam_data_end
[function]
[call site]
02203
bam_aux2i_end
[function]
[call site]
02204
__errno_location
[call site]
02205
__errno_location
[call site]
02206
__errno_location
[call site]
02207
le_to_i16
[function]
[call site]
02208
le_to_u16
[function]
[call site]
02209
__errno_location
[call site]
02210
le_to_u16
[function]
[call site]
02211
__errno_location
[call site]
02212
le_to_i32
[function]
[call site]
02213
le_to_u32
[function]
[call site]
02214
__errno_location
[call site]
02215
le_to_u32
[function]
[call site]
02216
__errno_location
[call site]
02217
bam_aux_get
[function]
[call site]
02218
kh_put_m_s2u64
[function]
[call site]
02219
kh_resize_m_s2u64
[function]
[call site]
02220
realloc
[call site]
02221
__ac_FNV1a_hash_string
[function]
[call site]
02222
strcmp
[call site]
02223
kh_get_m_s2u64
[function]
[call site]
02224
kh_destroy_m_s2u64
[function]
[call site]
02225
cram_generate_reference
[function]
[call site]
02226
extend_ref
[function]
[call site]
02227
realloc
[call site]
02228
realloc
[call site]
02229
hts_log
[function]
[call site]
02230
cram_add_to_ref
[function]
[call site]
02231
bam_aux_get
[function]
[call site]
02232
cram_add_to_ref_MD
[function]
[call site]
02233
bam_cigar2rlen
[function]
[call site]
02234
extend_ref
[function]
[call site]
02235
__ctype_b_loc
[call site]
02236
hts_str2uint
[function]
[call site]
02237
extend_ref
[function]
[call site]
02238
next_cigar_op
[function]
[call site]
02239
hts_log
[function]
[call site]
02240
__ctype_b_loc
[call site]
02241
extend_ref
[function]
[call site]
02242
next_cigar_op
[function]
[call site]
02243
hts_log
[function]
[call site]
02244
extend_ref
[function]
[call site]
02245
next_cigar_op
[function]
[call site]
02246
hts_log
[function]
[call site]
02247
extend_ref
[function]
[call site]
02248
hts_log
[function]
[call site]
02249
hts_log
[function]
[call site]
02250
pthread_mutex_lock
[call site]
02251
pthread_mutex_unlock
[call site]
02252
pthread_mutex_lock
[call site]
02253
pthread_mutex_unlock
[call site]
02254
cram_ref_decr
[function]
[call site]
02255
pthread_mutex_lock
[call site]
02256
cram_ref_decr_locked
[function]
[call site]
02257
__assert_fail
[call site]
02258
ref_entry_free_seq
[function]
[call site]
02259
pthread_mutex_unlock
[call site]
02260
cram_get_ref
[function]
[call site]
02261
hts_log
[function]
[call site]
02262
validate_md5
[function]
[call site]
02263
process_one_read
[function]
[call site]
02264
bam_aux_get
[function]
[call site]
02265
bam_aux_get
[function]
[call site]
02266
cram_stats_add
[function]
[call site]
02267
kh_init_m_i2i
[function]
[call site]
02268
calloc
[call site]
02269
kh_put_m_i2i
[function]
[call site]
02270
kh_resize_m_i2i
[function]
[call site]
02271
realloc
[call site]
02272
cram_stats_add
[function]
[call site]
02273
cram_stats_add
[function]
[call site]
02274
block_grow
[function]
[call site]
02275
block_resize
[function]
[call site]
02276
block_resize_exact
[function]
[call site]
02277
realloc
[call site]
02278
block_grow
[function]
[call site]
02279
nibble2base
[function]
[call site]
02280
hts_log
[function]
[call site]
02281
realloc
[call site]
02282
hts_log
[function]
[call site]
02283
kputuw
[function]
[call site]
02284
ks_resize
[function]
[call site]
02285
ks_resize
[function]
[call site]
02286
kputc
[function]
[call site]
02287
ks_resize
[function]
[call site]
02288
cram_add_substitution
[function]
[call site]
02289
cram_stats_add
[function]
[call site]
02290
cram_stats_add
[function]
[call site]
02291
cram_stats_add
[function]
[call site]
02292
block_append_char
[function]
[call site]
02293
block_grow
[function]
[call site]
02294
cram_add_feature
[function]
[call site]
02295
realloc
[call site]
02296
cram_stats_add
[function]
[call site]
02297
cram_stats_add
[function]
[call site]
02298
cram_stats_add
[function]
[call site]
02299
cram_add_bases
[function]
[call site]
02300
cram_add_feature
[function]
[call site]
02301
cram_add_base
[function]
[call site]
02302
cram_stats_add
[function]
[call site]
02303
cram_stats_add
[function]
[call site]
02304
block_append_char
[function]
[call site]
02305
cram_add_feature
[function]
[call site]
02306
cram_add_base
[function]
[call site]
02307
kputuw
[function]
[call site]
02308
kputc_
[function]
[call site]
02309
ks_resize
[function]
[call site]
02310
kputsn
[function]
[call site]
02311
ks_resize
[function]
[call site]
02312
cram_add_deletion
[function]
[call site]
02313
cram_stats_add
[function]
[call site]
02314
cram_add_feature
[function]
[call site]
02315
cram_add_skip
[function]
[call site]
02316
cram_stats_add
[function]
[call site]
02317
cram_add_feature
[function]
[call site]
02318
cram_add_insertion
[function]
[call site]
02319
cram_stats_add
[function]
[call site]
02320
block_append
[function]
[call site]
02321
block_grow
[function]
[call site]
02322
block_append_char
[function]
[call site]
02323
block_append_char
[function]
[call site]
02324
cram_add_feature
[function]
[call site]
02325
cram_add_quality
[function]
[call site]
02326
cram_stats_add
[function]
[call site]
02327
block_append_char
[function]
[call site]
02328
cram_add_feature
[function]
[call site]
02329
cram_add_softclip
[function]
[call site]
02330
block_append
[function]
[call site]
02331
block_append_char
[function]
[call site]
02332
block_append
[function]
[call site]
02333
block_append_char
[function]
[call site]
02334
block_append_char
[function]
[call site]
02335
cram_add_feature
[function]
[call site]
02336
cram_add_quality
[function]
[call site]
02337
cram_add_quality
[function]
[call site]
02338
cram_add_hardclip
[function]
[call site]
02339
cram_stats_add
[function]
[call site]
02340
cram_add_feature
[function]
[call site]
02341
cram_add_pad
[function]
[call site]
02342
cram_stats_add
[function]
[call site]
02343
cram_add_feature
[function]
[call site]
02344
hts_log
[function]
[call site]
02345
hts_log
[function]
[call site]
02346
cram_stats_add
[function]
[call site]
02347
kputuw
[function]
[call site]
02348
cram_stats_add
[function]
[call site]
02349
cram_encode_aux
[function]
[call site]
02350
bam_data_end
[function]
[call site]
02351
hts_log
[function]
[call site]
02352
sam_hrecs_find_rg
[function]
[call site]
02353
kh_get_m_s2i
[function]
[call site]
02354
block_append
[function]
[call site]
02355
hts_log
[function]
[call site]
02356
strncasecmp
[call site]
02357
hts_log
[function]
[call site]
02358
block_append
[function]
[call site]
02359
bam_aux2i_end
[function]
[call site]
02360
hts_log
[function]
[call site]
02361
block_append
[function]
[call site]
02362
block_append
[function]
[call site]
02363
kh_put_m_tagmap
[function]
[call site]
02364
kh_resize_m_tagmap
[function]
[call site]
02365
realloc
[call site]
02366
pthread_mutex_lock
[call site]
02367
kh_put_m_metrics
[function]
[call site]
02368
kh_resize_m_metrics
[function]
[call site]
02369
realloc
[call site]
02370
pthread_mutex_unlock
[call site]
02371
cram_new_metrics
[function]
[call site]
02372
kh_del_m_metrics
[function]
[call site]
02373
pthread_mutex_unlock
[call site]
02374
pthread_mutex_unlock
[call site]
02375
calloc
[call site]
02376
cram_encoder_init
[function]
[call site]
02377
cram_encoding2str
[function]
[call site]
02378
hts_log
[function]
[call site]
02379
cram_encoding2str
[function]
[call site]
02380
hts_log
[function]
[call site]
02381
abort
[call site]
02382
cram_stats_add
[function]
[call site]
02383
cram_stats_encoding
[function]
[call site]
02384
realloc
[call site]
02385
realloc
[call site]
02386
realloc
[call site]
02387
realloc
[call site]
02388
__assert_fail
[call site]
02389
cram_encoder_init
[function]
[call site]
02390
cram_stats_add
[function]
[call site]
02391
cram_stats_encoding
[function]
[call site]
02392
cram_encoder_init
[function]
[call site]
02393
cram_stats_add
[function]
[call site]
02394
cram_stats_encoding
[function]
[call site]
02395
cram_encoder_init
[function]
[call site]
02396
cram_encoder_init
[function]
[call site]
02397
hts_log
[function]
[call site]
02398
pthread_mutex_lock
[call site]
02399
pthread_mutex_unlock
[call site]
02400
cram_new_block
[function]
[call site]
02401
block_append_char
[function]
[call site]
02402
cram_new_block
[function]
[call site]
02403
block_append
[function]
[call site]
02404
cram_new_block
[function]
[call site]
02405
block_append
[function]
[call site]
02406
cram_new_block
[function]
[call site]
02407
block_append
[function]
[call site]
02408
cram_new_block
[function]
[call site]
02409
hts_log
[function]
[call site]
02410
cram_new_block
[function]
[call site]
02411
cram_new_block
[function]
[call site]
02412
hts_log
[function]
[call site]
02413
hts_log
[function]
[call site]
02414
block_append_char
[function]
[call site]
02415
kh_put_m_s2i
[function]
[call site]
02416
kh_resize_m_s2i
[function]
[call site]
02417
__ac_FNV1a_hash_string
[function]
[call site]
02418
string_ndup
[function]
[call site]
02419
cram_stats_add
[function]
[call site]
02420
sam_hrecs_find_rg
[function]
[call site]
02421
cram_stats_add
[function]
[call site]
02422
block_grow
[function]
[call site]
02423
block_grow
[function]
[call site]
02424
cram_stats_add
[function]
[call site]
02425
kh_put_m_s2i
[function]
[call site]
02426
string_ndup
[function]
[call site]
02427
cram_stats_add
[function]
[call site]
02428
cram_stats_add
[function]
[call site]
02429
cram_stats_del
[function]
[call site]
02430
__assert_fail
[call site]
02431
kh_get_m_i2i
[function]
[call site]
02432
kh_del_m_i2i
[function]
[call site]
02433
hts_log
[function]
[call site]
02434
hts_log
[function]
[call site]
02435
cram_stats_del
[function]
[call site]
02436
cram_stats_del
[function]
[call site]
02437
cram_stats_del
[function]
[call site]
02438
cram_stats_add
[function]
[call site]
02439
cram_stats_del
[function]
[call site]
02440
cram_stats_add
[function]
[call site]
02441
cram_stats_add
[function]
[call site]
02442
cram_stats_add
[function]
[call site]
02443
cram_stats_add
[function]
[call site]
02444
cram_stats_add
[function]
[call site]
02445
cram_stats_add
[function]
[call site]
02446
cram_stats_add
[function]
[call site]
02447
cram_stats_add
[function]
[call site]
02448
add_read_names
[function]
[call site]
02449
block_append
[function]
[call site]
02450
block_append
[function]
[call site]
02451
cram_stats_add
[function]
[call site]
02452
calloc
[call site]
02453
__assert_fail
[call site]
02454
cram_ref_decr
[function]
[call site]
02455
pthread_mutex_lock
[call site]
02456
pthread_mutex_unlock
[call site]
02457
cram_stats_encoding
[function]
[call site]
02458
pthread_mutex_lock
[call site]
02459
pthread_mutex_unlock
[call site]
02460
hts_log
[function]
[call site]
02461
hts_md5_init
[function]
[call site]
02462
hts_md5_update
[function]
[call site]
02463
hts_md5_final
[function]
[call site]
02464
hts_md5_destroy
[function]
[call site]
02465
cram_stats_encoding
[function]
[call site]
02466
cram_encoder_init
[function]
[call site]
02467
cram_stats_encoding
[function]
[call site]
02468
cram_encoder_init
[function]
[call site]
02469
cram_stats_encoding
[function]
[call site]
02470
cram_encoder_init
[function]
[call site]
02471
cram_encoder_init
[function]
[call site]
02472
cram_encoder_init
[function]
[call site]
02473
cram_stats_encoding
[function]
[call site]
02474
cram_encoder_init
[function]
[call site]
02475
cram_stats_encoding
[function]
[call site]
02476
cram_encoder_init
[function]
[call site]
02477
cram_stats_encoding
[function]
[call site]
02478
cram_encoder_init
[function]
[call site]
02479
cram_stats_encoding
[function]
[call site]
02480
cram_encoder_init
[function]
[call site]
02481
cram_stats_encoding
[function]
[call site]
02482
cram_encoder_init
[function]
[call site]
02483
cram_stats_encoding
[function]
[call site]
02484
cram_encoder_init
[function]
[call site]
02485
cram_stats_encoding
[function]
[call site]
02486
cram_encoder_init
[function]
[call site]
02487
cram_stats_encoding
[function]
[call site]
02488
cram_encoder_init
[function]
[call site]
02489
cram_stats_encoding
[function]
[call site]
02490
cram_encoder_init
[function]
[call site]
02491
cram_stats_encoding
[function]
[call site]
02492
cram_encoder_init
[function]
[call site]
02493
cram_stats_encoding
[function]
[call site]
02494
cram_encoder_init
[function]
[call site]
02495
cram_stats_encoding
[function]
[call site]
02496
cram_encoder_init
[function]
[call site]
02497
cram_stats_encoding
[function]
[call site]
02498
cram_encoder_init
[function]
[call site]
02499
cram_encoder_init
[function]
[call site]
02500
cram_stats_encoding
[function]
[call site]
02501
cram_encoder_init
[function]
[call site]
02502
cram_stats_encoding
[function]
[call site]
02503
cram_encoder_init
[function]
[call site]
02504
cram_stats_encoding
[function]
[call site]
02505
cram_encoder_init
[function]
[call site]
02506
cram_stats_encoding
[function]
[call site]
02507
cram_encoder_init
[function]
[call site]
02508
cram_stats_encoding
[function]
[call site]
02509
cram_encoder_init
[function]
[call site]
02510
cram_stats_encoding
[function]
[call site]
02511
cram_encoder_init
[function]
[call site]
02512
cram_stats_encoding
[function]
[call site]
02513
cram_encoder_init
[function]
[call site]
02514
cram_stats_encoding
[function]
[call site]
02515
cram_encoder_init
[function]
[call site]
02516
cram_encoder_init
[function]
[call site]
02517
cram_encoder_init
[function]
[call site]
02518
cram_encoder_init
[function]
[call site]
02519
cram_encoder_init
[function]
[call site]
02520
hts_log
[function]
[call site]
02521
cram_encode_slice
[function]
[call site]
02522
calloc
[call site]
02523
cram_new_block
[function]
[call site]
02524
cram_new_block
[function]
[call site]
02525
cram_new_block
[function]
[call site]
02526
block_append
[function]
[call site]
02527
cram_allocate_block
[function]
[call site]
02528
cram_new_block
[function]
[call site]
02529
cram_new_block
[function]
[call site]
02530
cram_allocate_block
[function]
[call site]
02531
cram_allocate_block
[function]
[call site]
02532
cram_allocate_block
[function]
[call site]
02533
cram_allocate_block
[function]
[call site]
02534
cram_allocate_block
[function]
[call site]
02535
cram_new_block
[function]
[call site]
02536
cram_allocate_block
[function]
[call site]
02537
cram_new_block
[function]
[call site]
02538
cram_encode_slice_read
[function]
[call site]
02539
hts_log
[function]
[call site]
02540
cram_free_block
[function]
[call site]
02541
cram_free_block
[function]
[call site]
02542
cram_free_block
[function]
[call site]
02543
cram_free_block
[function]
[call site]
02544
cram_compress_slice
[function]
[call site]
02545
cram_compress_block2
[function]
[call site]
02546
cram_compress_block3
[function]
[call site]
02547
pthread_mutex_lock
[call site]
02548
pthread_mutex_unlock
[call site]
02549
cram_compress_by_method
[function]
[call site]
02550
zlib_mem_deflate
[function]
[call site]
02551
deflateInit2_
[call site]
02552
hts_log
[function]
[call site]
02553
hts_log
[function]
[call site]
02554
deflate
[call site]
02555
hts_log
[function]
[call site]
02556
deflate
[call site]
02557
hts_log
[function]
[call site]
02558
deflateEnd
[call site]
02559
hts_log
[function]
[call site]
02560
BZ2_bzBuffToBuffCompress
[call site]
02561
fqz_compress
[function]
[call site]
02562
compress_block_fqz2f
[function]
[call site]
02563
fqz_pick_parameters
[function]
[call site]
02564
calloc
[call site]
02565
fqz_qual_stats
[function]
[call site]
02566
calloc
[call site]
02567
memcmp
[call site]
02568
fast_log
[function]
[call site]
02569
fast_log
[function]
[call site]
02570
fast_log
[function]
[call site]
02571
fast_log
[function]
[call site]
02572
fast_log
[function]
[call site]
02573
fast_log
[function]
[call site]
02574
fast_log
[function]
[call site]
02575
log
[call site]
02576
log
[call site]
02577
log
[call site]
02578
log
[call site]
02579
log
[call site]
02580
log
[call site]
02581
log
[call site]
02582
log
[call site]
02583
log
[call site]
02584
var_put_u32
[function]
[call site]
02585
var_put_u32_safe
[function]
[call site]
02586
fqz_store_parameters
[function]
[call site]
02587
store_array
[function]
[call site]
02588
fqz_store_parameters1
[function]
[call site]
02589
store_array
[function]
[call site]
02590
store_array
[function]
[call site]
02591
store_array
[function]
[call site]
02592
fqz_create_models
[function]
[call site]
02593
RC_SetOutput
[function]
[call site]
02594
RC_SetOutputEnd
[function]
[call site]
02595
RC_StartEncode
[function]
[call site]
02596
compress_new_read
[function]
[call site]
02597
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02598
RC_Encode
[function]
[call site]
02599
RC_ShiftLowCheck
[function]
[call site]
02600
SIMPLE_MODEL256_normalize
[function]
[call site]
02601
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02602
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02603
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02604
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02605
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02606
SIMPLE_MODEL2_normalize
[function]
[call site]
02607
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02608
memcmp
[call site]
02609
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02610
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02611
mm_prefetch
[function]
[call site]
02612
fqz_update_ctx
[function]
[call site]
02613
mm_prefetch
[function]
[call site]
02614
fqz_update_ctx
[function]
[call site]
02615
mm_prefetch
[function]
[call site]
02616
fqz_update_ctx
[function]
[call site]
02617
mm_prefetch
[function]
[call site]
02618
fqz_update_ctx
[function]
[call site]
02619
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02620
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02621
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02622
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02623
mm_prefetch
[function]
[call site]
02624
fqz_update_ctx
[function]
[call site]
02625
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02626
RC_FinishEncode
[function]
[call site]
02627
RC_ShiftLowCheck
[function]
[call site]
02628
RC_OutSize
[function]
[call site]
02629
fqz_destroy_models
[function]
[call site]
02630
fqz_free_parameters
[function]
[call site]
02631
lzma_mem_deflate
[function]
[call site]
02632
lzma_stream_buffer_bound
[call site]
02633
lzma_easy_buffer_encode
[call site]
02634
rans_compress
[function]
[call site]
02635
rans_compress_O1
[function]
[call site]
02636
rans_compress_O0
[function]
[call site]
02637
hist8
[function]
[call site]
02638
htscodecs_tls_calloc
[function]
[call site]
02639
htscodecs_tls_free
[function]
[call site]
02640
__assert_fail
[call site]
02641
RansEncSymbolInit
[function]
[call site]
02642
__assert_fail
[call site]
02643
__assert_fail
[call site]
02644
RansEncInit
[function]
[call site]
02645
RansEncInit
[function]
[call site]
02646
RansEncInit
[function]
[call site]
02647
RansEncInit
[function]
[call site]
02648
RansEncPutSymbol
[function]
[call site]
02649
__assert_fail
[call site]
02650
RansEncPutSymbol
[function]
[call site]
02651
RansEncPutSymbol
[function]
[call site]
02652
RansEncPutSymbol
[function]
[call site]
02653
RansEncPutSymbol
[function]
[call site]
02654
RansEncPutSymbol
[function]
[call site]
02655
RansEncPutSymbol
[function]
[call site]
02656
RansEncFlush
[function]
[call site]
02657
RansEncFlush
[function]
[call site]
02658
RansEncFlush
[function]
[call site]
02659
RansEncFlush
[function]
[call site]
02660
htscodecs_tls_alloc
[function]
[call site]
02661
hist1_4
[function]
[call site]
02662
htscodecs_tls_calloc
[function]
[call site]
02663
htscodecs_tls_free
[function]
[call site]
02664
RansEncSymbolInit
[function]
[call site]
02665
__assert_fail
[call site]
02666
RansEncInit
[function]
[call site]
02667
RansEncInit
[function]
[call site]
02668
RansEncInit
[function]
[call site]
02669
RansEncInit
[function]
[call site]
02670
RansEncPutSymbol
[function]
[call site]
02671
RansEncPutSymbol4
[function]
[call site]
02672
__assert_fail
[call site]
02673
__assert_fail
[call site]
02674
__assert_fail
[call site]
02675
__assert_fail
[call site]
02676
RansEncPutSymbol
[function]
[call site]
02677
RansEncPutSymbol
[function]
[call site]
02678
RansEncPutSymbol
[function]
[call site]
02679
RansEncPutSymbol
[function]
[call site]
02680
RansEncFlush
[function]
[call site]
02681
RansEncFlush
[function]
[call site]
02682
RansEncFlush
[function]
[call site]
02683
RansEncFlush
[function]
[call site]
02684
htscodecs_tls_free
[function]
[call site]
02685
rans_compress_O0
[function]
[call site]
02686
rans_compress_4x16
[function]
[call site]
02687
rans_compress_to_4x16
[function]
[call site]
02688
rans_compress_bound_4x16
[function]
[call site]
02689
var_put_u32
[function]
[call site]
02690
rans_compress_to_4x16
[function]
[call site]
02691
realloc
[call site]
02692
var_put_u32
[function]
[call site]
02693
var_put_u32
[function]
[call site]
02694
var_put_u32
[function]
[call site]
02695
hts_pack
[function]
[call site]
02696
var_put_u32
[function]
[call site]
02697
hts_rle_encode
[function]
[call site]
02698
rle_find_syms
[function]
[call site]
02699
var_put_u32
[function]
[call site]
02700
var_put_u32
[function]
[call site]
02701
var_put_u32
[function]
[call site]
02702
rans_enc_func
[function]
[call site]
02703
pthread_once
[call site]
02704
htscodecs_tls_cpu_init
[function]
[call site]
02705
strerror
[call site]
02706
fprintf
[call site]
02707
fprintf
[call site]
02708
var_put_u32
[function]
[call site]
02709
var_put_u32
[function]
[call site]
02710
var_put_u32
[function]
[call site]
02711
rans_enc_func
[function]
[call site]
02712
arith_compress_to
[function]
[call site]
02713
arith_compress_bound
[function]
[call site]
02714
var_put_u32
[function]
[call site]
02715
var_put_u32
[function]
[call site]
02716
arith_compress_to
[function]
[call site]
02717
arith_compress_to
[function]
[call site]
02718
var_put_u32
[function]
[call site]
02719
var_put_u32
[function]
[call site]
02720
hts_pack
[function]
[call site]
02721
var_put_u32
[function]
[call site]
02722
BZ2_bzBuffToBuffCompress
[call site]
02723
arith_compress_O0_RLE
[function]
[call site]
02724
arith_compress_bound
[function]
[call site]
02725
SIMPLE_MODEL256_init
[function]
[call site]
02726
htscodecs_tls_alloc
[function]
[call site]
02727
SIMPLE_MODEL258_init
[function]
[call site]
02728
RC_SetOutput
[function]
[call site]
02729
RC_SetOutputEnd
[function]
[call site]
02730
RC_StartEncode
[function]
[call site]
02731
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02732
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02733
SIMPLE_MODEL258_normalize
[function]
[call site]
02734
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02735
RC_FinishEncode
[function]
[call site]
02736
htscodecs_tls_free
[function]
[call site]
02737
RC_OutSize
[function]
[call site]
02738
htscodecs_tls_free
[function]
[call site]
02739
arith_compress_O1_RLE
[function]
[call site]
02740
arith_compress_bound
[function]
[call site]
02741
htscodecs_tls_alloc
[function]
[call site]
02742
SIMPLE_MODEL256_init
[function]
[call site]
02743
htscodecs_tls_alloc
[function]
[call site]
02744
htscodecs_tls_free
[function]
[call site]
02745
SIMPLE_MODEL258_init
[function]
[call site]
02746
RC_SetOutput
[function]
[call site]
02747
RC_SetOutputEnd
[function]
[call site]
02748
RC_StartEncode
[function]
[call site]
02749
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02750
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02751
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02752
RC_FinishEncode
[function]
[call site]
02753
htscodecs_tls_free
[function]
[call site]
02754
htscodecs_tls_free
[function]
[call site]
02755
RC_OutSize
[function]
[call site]
02756
htscodecs_tls_free
[function]
[call site]
02757
htscodecs_tls_free
[function]
[call site]
02758
arith_compress_O1
[function]
[call site]
02759
arith_compress_bound
[function]
[call site]
02760
htscodecs_tls_alloc
[function]
[call site]
02761
SIMPLE_MODEL256_init
[function]
[call site]
02762
RC_SetOutput
[function]
[call site]
02763
RC_SetOutputEnd
[function]
[call site]
02764
RC_StartEncode
[function]
[call site]
02765
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02766
RC_FinishEncode
[function]
[call site]
02767
htscodecs_tls_free
[function]
[call site]
02768
RC_OutSize
[function]
[call site]
02769
htscodecs_tls_free
[function]
[call site]
02770
arith_compress_O0
[function]
[call site]
02771
arith_compress_bound
[function]
[call site]
02772
SIMPLE_MODEL256_init
[function]
[call site]
02773
RC_SetOutput
[function]
[call site]
02774
RC_SetOutputEnd
[function]
[call site]
02775
RC_StartEncode
[function]
[call site]
02776
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02777
RC_FinishEncode
[function]
[call site]
02778
RC_OutSize
[function]
[call site]
02779
tok3_encode_names
[function]
[call site]
02780
create_context
[function]
[call site]
02781
build_trie
[function]
[call site]
02782
calloc
[call site]
02783
pool_create
[function]
[call site]
02784
pool_alloc
[function]
[call site]
02785
new_pool
[function]
[call site]
02786
free_context
[function]
[call site]
02787
free_context
[function]
[call site]
02788
encode_name
[function]
[call site]
02789
search_trie
[function]
[call site]
02790
__ctype_b_loc
[call site]
02791
__ctype_b_loc
[call site]
02792
__ctype_b_loc
[call site]
02793
__ctype_b_loc
[call site]
02794
__ctype_b_loc
[call site]
02795
calloc
[call site]
02796
__ctype_b_loc
[call site]
02797
strlen
[call site]
02798
encode_token_dup
[function]
[call site]
02799
encode_token_int
[function]
[call site]
02800
encode_token_type
[function]
[call site]
02801
descriptor_grow
[function]
[call site]
02802
realloc
[call site]
02803
descriptor_grow
[function]
[call site]
02804
encode_token_diff
[function]
[call site]
02805
encode_token_int
[function]
[call site]
02806
encode_token_char
[function]
[call site]
02807
encode_token_type
[function]
[call site]
02808
descriptor_grow
[function]
[call site]
02809
memcmp
[call site]
02810
encode_token_match
[function]
[call site]
02811
encode_token_type
[function]
[call site]
02812
encode_token_alpha
[function]
[call site]
02813
encode_token_type
[function]
[call site]
02814
descriptor_grow
[function]
[call site]
02815
encode_token_alpha
[function]
[call site]
02816
__ctype_b_loc
[call site]
02817
__ctype_b_loc
[call site]
02818
__ctype_b_loc
[call site]
02819
memcmp
[call site]
02820
encode_token_match
[function]
[call site]
02821
encode_token_alpha
[function]
[call site]
02822
encode_token_alpha
[function]
[call site]
02823
__ctype_b_loc
[call site]
02824
encode_token_match
[function]
[call site]
02825
encode_token_int1
[function]
[call site]
02826
encode_token_type
[function]
[call site]
02827
descriptor_grow
[function]
[call site]
02828
encode_token_int1_
[function]
[call site]
02829
descriptor_grow
[function]
[call site]
02830
encode_token_int
[function]
[call site]
02831
encode_token_int1_
[function]
[call site]
02832
encode_token_int
[function]
[call site]
02833
__ctype_b_loc
[call site]
02834
__ctype_b_loc
[call site]
02835
encode_token_match
[function]
[call site]
02836
encode_token_int1
[function]
[call site]
02837
encode_token_int
[function]
[call site]
02838
encode_token_int
[function]
[call site]
02839
encode_token_match
[function]
[call site]
02840
encode_token_char
[function]
[call site]
02841
encode_token_char
[function]
[call site]
02842
encode_token_end
[function]
[call site]
02843
encode_token_type
[function]
[call site]
02844
realloc
[call site]
02845
free_context
[function]
[call site]
02846
arith_compress_bound
[function]
[call site]
02847
free_context
[function]
[call site]
02848
compress
[function]
[call site]
02849
arith_encode
[function]
[call site]
02850
arith_compress_to
[function]
[call site]
02851
var_put_u32
[function]
[call site]
02852
rans_encode
[function]
[call site]
02853
rans_compress_to_4x16
[function]
[call site]
02854
var_put_u32
[function]
[call site]
02855
free_context
[function]
[call site]
02856
memcmp
[call site]
02857
free_context
[function]
[call site]
02858
free_context
[function]
[call site]
02859
pthread_mutex_lock
[call site]
02860
pthread_mutex_unlock
[call site]
02861
pthread_mutex_unlock
[call site]
02862
cram_compress_by_method
[function]
[call site]
02863
cram_block_method2str
[function]
[call site]
02864
hts_log
[function]
[call site]
02865
pthread_mutex_lock
[call site]
02866
pthread_mutex_unlock
[call site]
02867
cram_compress_block3
[function]
[call site]
02868
cram_compress_by_method
[function]
[call site]
02869
hts_log
[function]
[call site]
02870
cram_block_method2str
[function]
[call site]
02871
hts_log
[function]
[call site]
02872
pthread_mutex_lock
[call site]
02873
pthread_mutex_unlock
[call site]
02874
cram_compress_block2
[function]
[call site]
02875
cram_compress_block2
[function]
[call site]
02876
cram_compress_block2
[function]
[call site]
02877
cram_compress_block2
[function]
[call site]
02878
cram_compress_block2
[function]
[call site]
02879
cram_compress_block2
[function]
[call site]
02880
cram_compress_block2
[function]
[call site]
02881
cram_compress_block2
[function]
[call site]
02882
cram_compress_block2
[function]
[call site]
02883
cram_compress_block2
[function]
[call site]
02884
cram_compress_block2
[function]
[call site]
02885
cram_compress_block2
[function]
[call site]
02886
cram_compress_block2
[function]
[call site]
02887
cram_compress_block2
[function]
[call site]
02888
cram_compress_block2
[function]
[call site]
02889
realloc
[call site]
02890
cram_free_block
[function]
[call site]
02891
cram_encode_slice_header
[function]
[call site]
02892
cram_new_block
[function]
[call site]
02893
cram_free_block
[function]
[call site]
02894
cram_free_block
[function]
[call site]
02895
__assert_fail
[call site]
02896
cram_encode_compression_header
[function]
[call site]
02897
cram_new_block
[function]
[call site]
02898
cram_new_block
[function]
[call site]
02899
itf8_put_blk
[function]
[call site]
02900
itf8_put
[function]
[call site]
02901
block_append
[function]
[call site]
02902
itf8_put_blk
[function]
[call site]
02903
itf8_put_blk
[function]
[call site]
02904
itf8_put_blk
[function]
[call site]
02905
itf8_put_blk
[function]
[call site]
02906
itf8_put_blk
[function]
[call site]
02907
kh_destroy_map
[function]
[call site]
02908
kh_init_map
[function]
[call site]
02909
calloc
[call site]
02910
kh_put_map
[function]
[call site]
02911
kh_resize_map
[function]
[call site]
02912
realloc
[call site]
02913
__ac_FNV1a_hash_string
[function]
[call site]
02914
strcmp
[call site]
02915
kh_put_map
[function]
[call site]
02916
kh_put_map
[function]
[call site]
02917
kh_put_map
[function]
[call site]
02918
kh_put_map
[function]
[call site]
02919
kh_put_map
[function]
[call site]
02920
kh_put_map
[function]
[call site]
02921
kh_put_map
[function]
[call site]
02922
kh_put_map
[function]
[call site]
02923
block_append
[function]
[call site]
02924
block_append_char
[function]
[call site]
02925
sub_idx
[function]
[call site]
02926
sub_idx
[function]
[call site]
02927
sub_idx
[function]
[call site]
02928
sub_idx
[function]
[call site]
02929
sub_idx
[function]
[call site]
02930
sub_idx
[function]
[call site]
02931
sub_idx
[function]
[call site]
02932
sub_idx
[function]
[call site]
02933
sub_idx
[function]
[call site]
02934
sub_idx
[function]
[call site]
02935
sub_idx
[function]
[call site]
02936
sub_idx
[function]
[call site]
02937
sub_idx
[function]
[call site]
02938
sub_idx
[function]
[call site]
02939
sub_idx
[function]
[call site]
02940
sub_idx
[function]
[call site]
02941
sub_idx
[function]
[call site]
02942
sub_idx
[function]
[call site]
02943
sub_idx
[function]
[call site]
02944
sub_idx
[function]
[call site]
02945
block_append
[function]
[call site]
02946
block_append
[function]
[call site]
02947
hts_log
[function]
[call site]
02948
block_append
[function]
[call site]
02949
block_append
[function]
[call site]
02950
block_append
[function]
[call site]
02951
hts_log
[function]
[call site]
02952
cram_free_block
[function]
[call site]
02953
cram_ref_decr
[function]
[call site]
02954
cram_ref_decr
[function]
[call site]
02955
cram_flush_container2
[function]
[call site]
02956
htell
[function]
[call site]
02957
cram_write_container
[function]
[call site]
02958
itf8_put
[function]
[call site]
02959
crc32
[call site]
02960
hwrite
[function]
[call site]
02961
htell
[function]
[call site]
02962
cram_write_block
[function]
[call site]
02963
__assert_fail
[call site]
02964
hputc
[function]
[call site]
02965
hputc2
[function]
[call site]
02966
flush_buffer
[function]
[call site]
02967
hputc
[function]
[call site]
02968
hwrite
[function]
[call site]
02969
hwrite
[function]
[call site]
02970
hwrite
[function]
[call site]
02971
__assert_fail
[call site]
02972
crc32
[call site]
02973
crc32
[call site]
02974
crc32
[call site]
02975
int32_encode
[function]
[call site]
02976
hwrite
[function]
[call site]
02977
htell
[function]
[call site]
02978
cram_write_block
[function]
[call site]
02979
cram_write_block
[function]
[call site]
02980
htell
[function]
[call site]
02981
cram_index_slice
[function]
[call site]
02982
hts_log
[function]
[call site]
02983
cram_index_build_multiref
[function]
[call site]
02984
cram_decode_slice
[function]
[call site]
02985
cram_dependent_data_series
[function]
[call site]
02986
cram_uncompress_block
[function]
[call site]
02987
cram_uncompress_block
[function]
[call site]
02988
calloc
[call site]
02989
cram_codec_to_id
[function]
[call site]
02990
cram_codec_to_id
[function]
[call site]
02991
cram_codec_to_id
[function]
[call site]
02992
hts_log
[function]
[call site]
02993
cram_uncompress_block
[function]
[call site]
02994
cram_codec_to_id
[function]
[call site]
02995
cram_uncompress_block
[function]
[call site]
02996
cram_codec_to_id
[function]
[call site]
02997
cram_codec_to_id
[function]
[call site]
02998
block_resize_exact
[function]
[call site]
02999
block_resize_exact
[function]
[call site]
03000
block_resize_exact
[function]
[call site]
03001
strcmp
[call site]
03002
hts_log
[function]
[call site]
03003
cram_get_block_by_id
[function]
[call site]
03004
cram_uncompress_block
[function]
[call site]
03005
hts_log
[function]
[call site]
03006
cram_get_ref
[function]
[call site]
03007
hts_log
[function]
[call site]
03008
pthread_mutex_lock
[call site]
03009
pthread_mutex_lock
[call site]
03010
pthread_mutex_unlock
[call site]
03011
pthread_mutex_unlock
[call site]
03012
hts_log
[function]
[call site]
03013
memcmp
[call site]
03014
hts_log
[function]
[call site]
03015
hts_log
[function]
[call site]
03016
hts_md5_init
[function]
[call site]
03017
hts_md5_update
[function]
[call site]
03018
hts_md5_final
[function]
[call site]
03019
hts_md5_destroy
[function]
[call site]
03020
cram_get_block_by_id
[function]
[call site]
03021
hts_md5_init
[function]
[call site]
03022
hts_md5_update
[function]
[call site]
03023
hts_md5_final
[function]
[call site]
03024
hts_md5_destroy
[function]
[call site]
03025
memcmp
[call site]
03026
sam_hdr_tid2name
[function]
[call site]
03027
hts_log
[function]
[call site]
03028
md5_print
[function]
[call site]
03029
hts_log
[function]
[call site]
03030
md5_print
[function]
[call site]
03031
hts_log
[function]
[call site]
03032
sam_hdr_find_tag_id
[function]
[call site]
03033
sam_hdr_fill_hrecs
[function]
[call site]
03034
sam_hrecs_find_type_id
[function]
[call site]
03035
sam_hrecs_find_key
[function]
[call site]
03036
kputsn
[function]
[call site]
03037
hts_log
[function]
[call site]
03038
ks_free
[function]
[call site]
03039
ks_initialize
[function]
[call site]
03040
pthread_mutex_lock
[call site]
03041
pthread_mutex_lock
[call site]
03042
calloc
[call site]
03043
pthread_mutex_unlock
[call site]
03044
pthread_mutex_unlock
[call site]
03045
hts_log
[function]
[call site]
03046
pthread_mutex_lock
[call site]
03047
pthread_mutex_unlock
[call site]
03048
cram_get_ref
[function]
[call site]
03049
pthread_mutex_lock
[call site]
03050
pthread_mutex_unlock
[call site]
03051
pthread_mutex_lock
[call site]
03052
pthread_mutex_unlock
[call site]
03053
cram_ref_decr
[function]
[call site]
03054
pthread_mutex_lock
[call site]
03055
pthread_mutex_lock
[call site]
03056
pthread_mutex_unlock
[call site]
03057
pthread_mutex_unlock
[call site]
03058
hts_log
[function]
[call site]
03059
hts_log
[function]
[call site]
03060
pthread_mutex_lock
[call site]
03061
pthread_mutex_unlock
[call site]
03062
hts_log
[function]
[call site]
03063
cram_decode_tlen
[function]
[call site]
03064
cram_decode_tlen
[function]
[call site]
03065
cram_decode_tlen
[function]
[call site]
03066
cram_decode_aux_1_0
[function]
[call site]
03067
map_find
[function]
[call site]
03068
block_append
[function]
[call site]
03069
cram_decode_aux
[function]
[call site]
03070
strlen
[call site]
03071
sam_hdr_line_name
[function]
[call site]
03072
sam_hdr_fill_hrecs
[function]
[call site]
03073
hts_log
[function]
[call site]
03074
hts_log
[function]
[call site]
03075
hts_log
[function]
[call site]
03076
hts_log
[function]
[call site]
03077
strlen
[call site]
03078
block_append
[function]
[call site]
03079
block_append
[function]
[call site]
03080
block_append_char
[function]
[call site]
03081
block_append
[function]
[call site]
03082
map_find
[function]
[call site]
03083
block_append
[function]
[call site]
03084
aux_ele_size
[function]
[call site]
03085
hts_log
[function]
[call site]
03086
block_resize
[function]
[call site]
03087
block_resize
[function]
[call site]
03088
hts_log
[function]
[call site]
03089
cram_decode_seq
[function]
[call site]
03090
block_append
[function]
[call site]
03091
realloc
[call site]
03092
hts_log
[function]
[call site]
03093
hts_log
[function]
[call site]
03094
hts_log
[function]
[call site]
03095
memchr
[call site]
03096
add_md_char
[function]
[call site]
03097
block_append_uint
[function]
[call site]
03098
block_grow
[function]
[call site]
03099
append_uint32
[function]
[call site]
03100
block_append_char
[function]
[call site]
03101
block_append_uint
[function]
[call site]
03102
add_md_char
[function]
[call site]
03103
block_append_uint
[function]
[call site]
03104
block_append_char
[function]
[call site]
03105
block_append
[function]
[call site]
03106
block_append_char
[function]
[call site]
03107
block_append
[function]
[call site]
03108
block_append_uint
[function]
[call site]
03109
block_append_uint
[function]
[call site]
03110
block_append_uint
[function]
[call site]
03111
block_append_char
[function]
[call site]
03112
block_append_uint
[function]
[call site]
03113
block_append_char
[function]
[call site]
03114
hts_log
[function]
[call site]
03115
hts_log
[function]
[call site]
03116
memchr
[call site]
03117
add_md_char
[function]
[call site]
03118
realloc
[call site]
03119
block_append_uint
[function]
[call site]
03120
realloc
[call site]
03121
block_append_char
[function]
[call site]
03122
block_append
[function]
[call site]
03123
hts_log
[function]
[call site]
03124
pthread_mutex_lock
[call site]
03125
cram_ref_decr
[function]
[call site]
03126
cram_ref_decr
[function]
[call site]
03127
pthread_mutex_unlock
[call site]
03128
cram_decode_slice_xref
[function]
[call site]
03129
hts_log
[function]
[call site]
03130
cram_free_block
[function]
[call site]
03131
block_resize_exact
[function]
[call site]
03132
block_resize_exact
[function]
[call site]
03133
block_resize_exact
[function]
[call site]
03134
block_resize_exact
[function]
[call site]
03135
pthread_mutex_lock
[call site]
03136
cram_ref_decr
[function]
[call site]
03137
pthread_mutex_unlock
[call site]
03138
hts_log
[function]
[call site]
03139
snprintf
[call site]
03140
strlen
[call site]
03141
bgzf_write
[function]
[call site]
03142
hwrite
[function]
[call site]
03143
__assert_fail
[call site]
03144
lazy_flush
[function]
[call site]
03145
mt_queue
[function]
[call site]
03146
bgzf_flush
[function]
[call site]
03147
snprintf
[call site]
03148
strlen
[call site]
03149
bgzf_write
[function]
[call site]
03150
snprintf
[call site]
03151
strlen
[call site]
03152
bgzf_write
[function]
[call site]
03153
__errno_location
[call site]
03154
hts_tpool_dispatch2
[function]
[call site]
03155
hts_tpool_dispatch3
[function]
[call site]
03156
cram_flush_thread
[function]
[call site]
03157
cram_encode_container
[function]
[call site]
03158
hts_log
[function]
[call site]
03159
__errno_location
[call site]
03160
cram_flush_result
[function]
[call site]
03161
hts_tpool_next_result
[function]
[call site]
03162
pthread_mutex_lock
[call site]
03163
hts_tpool_next_result_locked
[function]
[call site]
03164
pthread_mutex_unlock
[call site]
03165
hts_tpool_result_data
[function]
[call site]
03166
hts_tpool_delete_result
[function]
[call site]
03167
cram_flush_container2
[function]
[call site]
03168
cram_free_slice
[function]
[call site]
03169
cram_free_slice
[function]
[call site]
03170
cram_free_container
[function]
[call site]
03171
hts_tpool_delete_result
[function]
[call site]
03172
cram_free_container
[function]
[call site]
03173
hts_usleep
[function]
[call site]
03174
cram_drain_rqueue
[function]
[call site]
03175
hts_tpool_process_flush
[function]
[call site]
03176
cram_flush_result
[function]
[call site]
03177
hts_tpool_process_destroy
[function]
[call site]
03178
pthread_mutex_destroy
[call site]
03179
pthread_mutex_destroy
[call site]
03180
pthread_mutex_destroy
[call site]
03181
pthread_mutex_destroy
[call site]
03182
cram_write_eof_block
[function]
[call site]
03183
cram_encode_compression_header
[function]
[call site]
03184
cram_write_container
[function]
[call site]
03185
cram_write_block
[function]
[call site]
03186
cram_close
[function]
[call site]
03187
free_bam_list
[function]
[call site]
03188
hclose
[function]
[call site]
03189
cram_free_file_def
[function]
[call site]
03190
sam_hdr_destroy
[function]
[call site]
03191
cram_free_container
[function]
[call site]
03192
cram_free_container
[function]
[call site]
03193
refs_free
[function]
[call site]
03194
kh_destroy_m_metrics
[function]
[call site]
03195
cram_index_free
[function]
[call site]
03196
cram_index_free_recurse
[function]
[call site]
03197
cram_index_free_recurse
[function]
[call site]
03198
hts_tpool_destroy
[function]
[call site]
03199
bgzf_close
[function]
[call site]
03200
cram_free_block
[function]
[call site]
03201
kh_destroy_map
[function]
[call site]
03202
cram_free_block
[function]
[call site]
03203
sam_state_destroy
[function]
[call site]
03204
fastq_state_destroy
[function]
[call site]
03205
kh_destroy_tag
[function]
[call site]
03206
ks_free
[function]
[call site]
03207
ks_initialize
[function]
[call site]
03208
ks_free
[function]
[call site]
03209
ks_free
[function]
[call site]
03210
regfree
[call site]
03211
bgzf_close
[function]
[call site]
03212
hclose
[function]
[call site]
03213
hts_idx_close_otf_fp
[function]
[call site]
03214
need_idx_ugly_delay_hack
[function]
[call site]
03215
idx_write_uint64
[function]
[call site]
03216
ed_is_big
[function]
[call site]
03217
ed_swap_8
[function]
[call site]
03218
bgzf_write
[function]
[call site]
03219
bgzf_close
[function]
[call site]
03220
__errno_location
[call site]
03221
sam_hdr_destroy
[function]
[call site]
03222
hts_idx_destroy
[function]
[call site]
03223
cram_index_free
[function]
[call site]
03224
kh_destroy_bin
[function]
[call site]
03225
hts_filter_free
[function]
[call site]
03226
__errno_location
[call site]
03227
view_sam
[function]
[call site]
03228
abort
[call site]
03229
hopen
[function]
[call site]
03230
hts_hopen
[function]
[call site]
03231
hclose
[function]
[call site]
03232
abort
[call site]
03233
hts_open
[function]
[call site]
03234
hts_open_format
[function]
[call site]
03235
strncpy
[call site]
03236
strchr
[call site]
03237
strchr
[call site]
03238
strchr
[call site]
03239
strstr
[call site]
03240
strdup
[call site]
03241
hopen
[function]
[call site]
03242
hts_hopen
[function]
[call site]
03243
hts_opt_apply
[function]
[call site]
03244
__errno_location
[call site]
03245
__errno_location
[call site]
03246
__errno_location
[call site]
03247
__errno_location
[call site]
03248
strerror
[call site]
03249
hts_log
[function]
[call site]
03250
hclose_abruptly
[function]
[call site]
03251
abort
[call site]
03252
sam_hdr_read
[function]
[call site]
03253
__errno_location
[call site]
03254
bam_hdr_read
[function]
[call site]
03255
bgzf_check_EOF
[function]
[call site]
03256
pthread_mutex_lock
[call site]
03257
pthread_cond_signal
[call site]
03258
hts_tpool_wake_dispatch
[function]
[call site]
03259
pthread_cond_wait
[call site]
03260
pthread_cond_signal
[call site]
03261
abort
[call site]
03262
pthread_mutex_unlock
[call site]
03263
bgzf_check_EOF_common
[function]
[call site]
03264
htell
[function]
[call site]
03265
hseek
[function]
[call site]
03266
__errno_location
[call site]
03267
hclearerr
[function]
[call site]
03268
__errno_location
[call site]
03269
hclearerr
[function]
[call site]
03270
hread
[function]
[call site]
03271
hseek
[function]
[call site]
03272
memcmp
[call site]
03273
perror
[call site]
03274
hts_log
[function]
[call site]
03275
bgzf_read
[function]
[call site]
03276
memcmp
[call site]
03277
hts_log
[function]
[call site]
03278
sam_hdr_init
[function]
[call site]
03279
bgzf_read
[function]
[call site]
03280
le_to_u32
[function]
[call site]
03281
bgzf_read
[function]
[call site]
03282
bgzf_read
[function]
[call site]
03283
ed_swap_4p
[function]
[call site]
03284
ed_swap_4
[function]
[call site]
03285
calloc
[call site]
03286
calloc
[call site]
03287
bgzf_read
[function]
[call site]
03288
ed_swap_4p
[function]
[call site]
03289
bgzf_read
[function]
[call site]
03290
realloc
[call site]
03291
bgzf_read
[function]
[call site]
03292
ed_swap_4p
[function]
[call site]
03293
hts_log
[function]
[call site]
03294
hts_log
[function]
[call site]
03295
hts_log
[function]
[call site]
03296
sam_hdr_destroy
[function]
[call site]
03297
sam_hdr_sanitise
[function]
[call site]
03298
hts_log
[function]
[call site]
03299
sam_hdr_destroy
[function]
[call site]
03300
hts_log
[function]
[call site]
03301
hts_log
[function]
[call site]
03302
hts_log
[function]
[call site]
03303
sam_hdr_destroy
[function]
[call site]
03304
realloc
[call site]
03305
sam_hdr_destroy
[function]
[call site]
03306
sam_hdr_dup
[function]
[call site]
03307
sam_hdr_init
[function]
[call site]
03308
calloc
[call site]
03309
calloc
[call site]
03310
strdup
[call site]
03311
sam_hdr_dup_sdict
[function]
[call site]
03312
kh_init_s2i
[function]
[call site]
03313
kh_get_s2i
[function]
[call site]
03314
kh_put_s2i
[function]
[call site]
03315
kh_destroy_s2i
[function]
[call site]
03316
sam_hrecs_rebuild_text
[function]
[call site]
03317
kputsn
[function]
[call site]
03318
sam_hrecs_rebuild_lines
[function]
[call site]
03319
kputsn
[function]
[call site]
03320
build_header_line
[function]
[call site]
03321
kputc_
[function]
[call site]
03322
kputsn
[function]
[call site]
03323
kputc_
[function]
[call site]
03324
kputsn
[function]
[call site]
03325
kputc
[function]
[call site]
03326
ks_release
[function]
[call site]
03327
ks_release
[function]
[call site]
03328
sam_hdr_update_target_arrays
[function]
[call site]
03329
sam_hdr_destroy
[function]
[call site]
03330
sam_hdr_sanitise
[function]
[call site]
03331
sam_hdr_create
[function]
[call site]
03332
sam_hdr_init
[function]
[call site]
03333
sam_hdr_build_from_sam_file
[function]
[call site]
03334
sam_hrecs_new
[function]
[call site]
03335
hts_getline
[function]
[call site]
03336
hts_log
[function]
[call site]
03337
abort
[call site]
03338
kgetline2
[function]
[call site]
03339
ks_resize
[function]
[call site]
03340
hgetln
[function]
[call site]
03341
herrno
[function]
[call site]
03342
__errno_location
[call site]
03343
bgzf_getline
[function]
[call site]
03344
bgzf_read_block
[function]
[call site]
03345
memchr
[call site]
03346
ks_expand
[function]
[call site]
03347
bgzf_htell
[function]
[call site]
03348
abort
[call site]
03349
isalpha_c
[function]
[call site]
03350
sam_hrecs_error
[function]
[call site]
03351
strncmp
[call site]
03352
kputc
[function]
[call site]
03353
valid_sam_header_type
[function]
[call site]
03354
hts_log
[function]
[call site]
03355
warn_if_known_stderr
[function]
[call site]
03356
sam_hrecs_parse_single_line
[function]
[call site]
03357
TYPEKEY
[function]
[call site]
03358
kputsn
[function]
[call site]
03359
kputc
[function]
[call site]
03360
bgzf_peek
[function]
[call site]
03361
bgzf_read_block
[function]
[call site]
03362
hts_log
[function]
[call site]
03363
hpeek
[function]
[call site]
03364
strstr
[call site]
03365
hopen
[function]
[call site]
03366
kgetline
[function]
[call site]
03367
strlen
[call site]
03368
hgets
[function]
[call site]
03369
strchr
[call site]
03370
strtoll
[call site]
03371
kputs
[function]
[call site]
03372
kputsn
[function]
[call site]
03373
kputs
[function]
[call site]
03374
kputll
[function]
[call site]
03375
kputc
[function]
[call site]
03376
sam_hrecs_parse_single_line
[function]
[call site]
03377
ks_free
[function]
[call site]
03378
hclose
[function]
[call site]
03379
hts_log
[function]
[call site]
03380
kh_grow_to_fit_m_s2i
[function]
[call site]
03381
realloc
[call site]
03382
sam_hrecs_update_hashes
[function]
[call site]
03383
kputsn
[function]
[call site]
03384
ks_release
[function]
[call site]
03385
sam_hdr_update_target_arrays
[function]
[call site]
03386
ks_free
[function]
[call site]
03387
sam_hdr_destroy
[function]
[call site]
03388
sam_hdr_destroy
[function]
[call site]
03389
sam_hdr_sanitise
[function]
[call site]
03390
sam_hdr_init
[function]
[call site]
03391
__errno_location
[call site]
03392
__errno_location
[call site]
03393
sam_hdr_incr_ref
[function]
[call site]
03394
hts_close_or_abort
[function]
[call site]
03395
hts_close
[function]
[call site]
03396
abort
[call site]
03397
hts_close
[function]
[call site]
03398
hts_close
[function]
[call site]
03399
sam_hdr_count_lines
[function]
[call site]
03400
sam_hdr_fill_hrecs
[function]
[call site]
03401
sam_hrecs_find_type_id
[function]
[call site]
03402
sam_hdr_write
[function]
[call site]
03403
__errno_location
[call site]
03404
bam_hdr_write
[function]
[call site]
03405
sam_hrecs_rebuild_text
[function]
[call site]
03406
hts_log
[function]
[call site]
03407
hts_log
[function]
[call site]
03408
hts_log
[function]
[call site]
03409
hts_log
[function]
[call site]
03410
hts_log
[function]
[call site]
03411
hts_log
[function]
[call site]
03412
bgzf_write
[function]
[call site]
03413
ed_swap_4
[function]
[call site]
03414
bgzf_write
[function]
[call site]
03415
bgzf_write
[function]
[call site]
03416
ed_swap_4
[function]
[call site]
03417
bgzf_write
[function]
[call site]
03418
bgzf_write
[function]
[call site]
03419
bgzf_write
[function]
[call site]
03420
bgzf_write
[function]
[call site]
03421
strlen
[call site]
03422
ed_swap_4
[function]
[call site]
03423
bgzf_write
[function]
[call site]
03424
bgzf_write
[function]
[call site]
03425
bgzf_write
[function]
[call site]
03426
ed_swap_4
[function]
[call site]
03427
bgzf_write
[function]
[call site]
03428
bgzf_write
[function]
[call site]
03429
bgzf_flush
[function]
[call site]
03430
cram_set_header2
[function]
[call site]
03431
sam_hdr_destroy
[function]
[call site]
03432
sam_hdr_dup
[function]
[call site]
03433
refs_from_header
[function]
[call site]
03434
cram_load_reference
[function]
[call site]
03435
cram_write_SAM_hdr
[function]
[call site]
03436
cram_write_file_def
[function]
[call site]
03437
hwrite
[function]
[call site]
03438
sam_hrecs_find_rg
[function]
[call site]
03439
sam_hdr_add_line
[function]
[call site]
03440
sam_hdr_fill_hrecs
[function]
[call site]
03441
sam_hrecs_vadd
[function]
[call site]
03442
rebuild_target_arrays
[function]
[call site]
03443
redact_header_text
[function]
[call site]
03444
refs_from_header
[function]
[call site]
03445
refs2id
[function]
[call site]
03446
sam_hrecs_find_type_id
[function]
[call site]
03447
sam_hrecs_find_key
[function]
[call site]
03448
cram_get_ref
[function]
[call site]
03449
hts_log
[function]
[call site]
03450
hts_log
[function]
[call site]
03451
hts_log
[function]
[call site]
03452
pthread_mutex_lock
[call site]
03453
pthread_mutex_unlock
[call site]
03454
hts_md5_init
[function]
[call site]
03455
hts_md5_update
[function]
[call site]
03456
hts_md5_final
[function]
[call site]
03457
hts_md5_destroy
[function]
[call site]
03458
cram_ref_decr
[function]
[call site]
03459
hts_md5_hex
[function]
[call site]
03460
sam_hdr_update_line
[function]
[call site]
03461
sam_hdr_fill_hrecs
[function]
[call site]
03462
sam_hrecs_find_type_id
[function]
[call site]
03463
check_for_name_update
[function]
[call site]
03464
TYPEKEY
[function]
[call site]
03465
TYPEKEY
[function]
[call site]
03466
TYPEKEY
[function]
[call site]
03467
sam_hrecs_find_key
[function]
[call site]
03468
__assert_fail
[call site]
03469
strcmp
[call site]
03470
strcmp
[call site]
03471
kh_get_m_s2i
[function]
[call site]
03472
hts_log
[function]
[call site]
03473
TYPEKEY
[function]
[call site]
03474
hts_log
[function]
[call site]
03475
sam_hrecs_vupdate
[function]
[call site]
03476
kh_get_m_s2i
[function]
[call site]
03477
sam_hrecs_find_key
[function]
[call site]
03478
__assert_fail
[call site]
03479
__assert_fail
[call site]
03480
__assert_fail
[call site]
03481
kh_del_m_s2i
[function]
[call site]
03482
kh_put_m_s2i
[function]
[call site]
03483
hts_log
[function]
[call site]
03484
TYPEKEY
[function]
[call site]
03485
sam_hrecs_update_hashes
[function]
[call site]
03486
rebuild_target_arrays
[function]
[call site]
03487
redact_header_text
[function]
[call site]
03488
full_path
[function]
[call site]
03489
strlen
[call site]
03490
hisremote
[function]
[call site]
03491
strncpy
[call site]
03492
toupper_c
[function]
[call site]
03493
strncpy
[call site]
03494
getcwd
[call site]
03495
strlen
[call site]
03496
strncpy
[call site]
03497
snprintf
[call site]
03498
sam_hdr_update_line
[function]
[call site]
03499
sam_hdr_length
[function]
[call site]
03500
sam_hdr_rebuild
[function]
[call site]
03501
rebuild_target_arrays
[function]
[call site]
03502
hts_log
[function]
[call site]
03503
sam_hdr_link_pg
[function]
[call site]
03504
sam_hdr_fill_hrecs
[function]
[call site]
03505
realloc
[call site]
03506
calloc
[call site]
03507
__assert_fail
[call site]
03508
kh_get_m_s2i
[function]
[call site]
03509
hts_log
[function]
[call site]
03510
hts_log
[function]
[call site]
03511
redact_header_text
[function]
[call site]
03512
hts_log
[function]
[call site]
03513
sam_hrecs_rebuild_text
[function]
[call site]
03514
ks_free
[function]
[call site]
03515
hts_log
[function]
[call site]
03516
ks_len
[function]
[call site]
03517
ks_release
[function]
[call site]
03518
hts_log
[function]
[call site]
03519
int32_encode
[function]
[call site]
03520
sam_hdr_str
[function]
[call site]
03521
sam_hdr_rebuild
[function]
[call site]
03522
hwrite
[function]
[call site]
03523
cram_new_block
[function]
[call site]
03524
cram_new_container
[function]
[call site]
03525
calloc
[call site]
03526
calloc
[call site]
03527
cram_new_compression_header
[function]
[call site]
03528
calloc
[call site]
03529
cram_new_block
[function]
[call site]
03530
kh_init_m_s2i
[function]
[call site]
03531
cram_free_block
[function]
[call site]
03532
string_pool_create
[function]
[call site]
03533
kh_destroy_m_s2i
[function]
[call site]
03534
cram_free_block
[function]
[call site]
03535
cram_stats_create
[function]
[call site]
03536
calloc
[call site]
03537
kh_init_m_tagmap
[function]
[call site]
03538
calloc
[call site]
03539
cram_free_block
[function]
[call site]
03540
cram_free_container
[function]
[call site]
03541
int32_put_blk
[function]
[call site]
03542
block_append
[function]
[call site]
03543
sam_hdr_str
[function]
[call site]
03544
block_append
[function]
[call site]
03545
cram_compress_block
[function]
[call site]
03546
cram_compress_block2
[function]
[call site]
03547
cram_free_block
[function]
[call site]
03548
cram_free_container
[function]
[call site]
03549
calloc
[call site]
03550
cram_free_block
[function]
[call site]
03551
cram_free_container
[function]
[call site]
03552
block_append
[function]
[call site]
03553
cram_write_container
[function]
[call site]
03554
cram_free_block
[function]
[call site]
03555
cram_free_container
[function]
[call site]
03556
cram_write_block
[function]
[call site]
03557
cram_free_block
[function]
[call site]
03558
cram_free_container
[function]
[call site]
03559
block_resize
[function]
[call site]
03560
cram_write_block
[function]
[call site]
03561
cram_free_block
[function]
[call site]
03562
cram_free_container
[function]
[call site]
03563
cram_free_block
[function]
[call site]
03564
cram_free_container
[function]
[call site]
03565
hflush
[function]
[call site]
03566
sam_hrecs_rebuild_text
[function]
[call site]
03567
strstr
[call site]
03568
bgzf_write
[function]
[call site]
03569
hwrite
[function]
[call site]
03570
kputsn
[function]
[call site]
03571
kputs
[function]
[call site]
03572
kputsn
[function]
[call site]
03573
kputw
[function]
[call site]
03574
kputc
[function]
[call site]
03575
bgzf_write
[function]
[call site]
03576
hwrite
[function]
[call site]
03577
bgzf_flush
[function]
[call site]
03578
hflush
[function]
[call site]
03579
__errno_location
[call site]
03580
sam_hdr_dup
[function]
[call site]
03581
sam_hdr_destroy
[function]
[call site]
03582
bam_init1
[function]
[call site]
03583
sam_read1
[function]
[call site]
03584
sam_read1_bam
[function]
[call site]
03585
bam_read1
[function]
[call site]
03586
bgzf_read_small
[function]
[call site]
03587
bgzf_read
[function]
[call site]
03588
ed_swap_4p
[function]
[call site]
03589
bgzf_read
[function]
[call site]
03590
le_to_u32
[function]
[call site]
03591
le_to_i32
[function]
[call site]
03592
le_to_u32
[function]
[call site]
03593
le_to_u32
[function]
[call site]
03594
le_to_u32
[function]
[call site]
03595
le_to_i32
[function]
[call site]
03596
le_to_i32
[function]
[call site]
03597
realloc_bam_data
[function]
[call site]
03598
sam_realloc_bam_data
[function]
[call site]
03599
__errno_location
[call site]
03600
__errno_location
[call site]
03601
bam_get_mempolicy
[function]
[call site]
03602
realloc
[call site]
03603
bam_get_mempolicy
[function]
[call site]
03604
bam_set_mempolicy
[function]
[call site]
03605
bgzf_read_small
[function]
[call site]
03606
fixup_missing_qname_nul
[function]
[call site]
03607
realloc_bam_data
[function]
[call site]
03608
bgzf_read_small
[function]
[call site]
03609
swap_data
[function]
[call site]
03610
ed_swap_4p
[function]
[call site]
03611
bam_tag2cigar
[function]
[call site]
03612
bam_aux_get
[function]
[call site]
03613
__errno_location
[call site]
03614
__errno_location
[call site]
03615
__errno_location
[call site]
03616
le_to_u32
[function]
[call site]
03617
possibly_expand_bam_data
[function]
[call site]
03618
__errno_location
[call site]
03619
sam_realloc_bam_data
[function]
[call site]
03620
bam_endpos
[function]
[call site]
03621
bam_cigar2rlen
[function]
[call site]
03622
hts_reg2bin
[function]
[call site]
03623
hts_log
[function]
[call site]
03624
bam_cigar2rqlens
[function]
[call site]
03625
hts_reg2bin
[function]
[call site]
03626
hts_log
[function]
[call site]
03627
__errno_location
[call site]
03628
sam_read1_cram
[function]
[call site]
03629
cram_get_bam_seq
[function]
[call site]
03630
cram_get_seq
[function]
[call site]
03631
cram_next_slice
[function]
[call site]
03632
cram_first_slice
[function]
[call site]
03633
cram_free_container
[function]
[call site]
03634
cram_read_container
[function]
[call site]
03635
cram_seek
[function]
[call site]
03636
cram_free_container
[function]
[call site]
03637
cram_read_container
[function]
[call site]
03638
cram_read_block
[function]
[call site]
03639
cram_decode_compression_header
[function]
[call site]
03640
calloc
[call site]
03641
cram_uncompress_block
[function]
[call site]
03642
kh_init_map
[function]
[call site]
03643
cram_free_compression_header
[function]
[call site]
03644
cram_free_compression_header
[function]
[call site]
03645
kh_put_map
[function]
[call site]
03646
cram_free_compression_header
[function]
[call site]
03647
kh_put_map
[function]
[call site]
03648
cram_free_compression_header
[function]
[call site]
03649
kh_put_map
[function]
[call site]
03650
cram_free_compression_header
[function]
[call site]
03651
kh_put_map
[function]
[call site]
03652
cram_free_compression_header
[function]
[call site]
03653
cram_free_compression_header
[function]
[call site]
03654
kh_put_map
[function]
[call site]
03655
cram_free_compression_header
[function]
[call site]
03656
cram_decode_TD
[function]
[call site]
03657
cram_new_block
[function]
[call site]
03658
hts_log
[function]
[call site]
03659
cram_free_block
[function]
[call site]
03660
cram_free_block
[function]
[call site]
03661
cram_free_block
[function]
[call site]
03662
block_append
[function]
[call site]
03663
block_append_char
[function]
[call site]
03664
calloc
[call site]
03665
cram_free_block
[function]
[call site]
03666
cram_free_block
[function]
[call site]
03667
cram_free_compression_header
[function]
[call site]
03668
kh_put_map
[function]
[call site]
03669
cram_free_compression_header
[function]
[call site]
03670
hts_log
[function]
[call site]
03671
cram_free_compression_header
[function]
[call site]
03672
cram_free_compression_header
[function]
[call site]
03673
cram_free_compression_header
[function]
[call site]
03674
hts_log
[function]
[call site]
03675
hts_log
[function]
[call site]
03676
cram_decoder_init
[function]
[call site]
03677
cram_encoding2str
[function]
[call site]
03678
hts_log
[function]
[call site]
03679
cram_free_compression_header
[function]
[call site]
03680
cram_free_compression_header
[function]
[call site]
03681
cram_free_compression_header
[function]
[call site]
03682
cram_free_compression_header
[function]
[call site]
03683
cram_decoder_init
[function]
[call site]
03684
cram_free_compression_header
[function]
[call site]
03685
cram_free_compression_header
[function]
[call site]
03686
sam_hrecs_sort_order
[function]
[call site]
03687
TYPEKEY
[function]
[call site]
03688
kh_get_sam_hrecs_t
[function]
[call site]
03689
strcmp
[call site]
03690
strcmp
[call site]
03691
strcmp
[call site]
03692
strcmp
[call site]
03693
hts_log
[function]
[call site]
03694
pthread_mutex_lock
[call site]
03695
pthread_mutex_unlock
[call site]
03696
cram_free_slice
[function]
[call site]
03697
cram_free_container
[function]
[call site]
03698
cram_read_container
[function]
[call site]
03699
cram_free_container
[function]
[call site]
03700
cram_free_container
[function]
[call site]
03701
cram_free_container
[function]
[call site]
03702
cram_free_container
[function]
[call site]
03703
hseek
[function]
[call site]
03704
cram_read_block
[function]
[call site]
03705
cram_decode_compression_header
[function]
[call site]
03706
sam_hrecs_sort_order
[function]
[call site]
03707
pthread_mutex_lock
[call site]
03708
pthread_mutex_unlock
[call site]
03709
cram_free_container
[function]
[call site]
03710
cram_read_slice
[function]
[call site]
03711
cram_read_block
[function]
[call site]
03712
calloc
[call site]
03713
cram_decode_slice_header
[function]
[call site]
03714
cram_uncompress_block
[function]
[call site]
03715
calloc
[call site]
03716
hts_log
[function]
[call site]
03717
cram_content_type2str
[function]
[call site]
03718
hts_log
[function]
[call site]
03719
hts_log
[function]
[call site]
03720
calloc
[call site]
03721
cram_read_block
[function]
[call site]
03722
calloc
[call site]
03723
cram_new_block
[function]
[call site]
03724
cram_new_block
[function]
[call site]
03725
cram_new_block
[function]
[call site]
03726
cram_new_block
[function]
[call site]
03727
cram_new_block
[function]
[call site]
03728
cram_new_block
[function]
[call site]
03729
cram_free_block
[function]
[call site]
03730
cram_free_slice
[function]
[call site]
03731
cram_free_slice
[function]
[call site]
03732
cram_free_slice
[function]
[call site]
03733
cram_free_slice
[function]
[call site]
03734
cram_decode_slice_mt
[function]
[call site]
03735
cram_decode_slice
[function]
[call site]
03736
hts_tpool_process_sz
[function]
[call site]
03737
pthread_mutex_lock
[call site]
03738
pthread_mutex_unlock
[call site]
03739
__errno_location
[call site]
03740
__errno_location
[call site]
03741
hts_tpool_dispatch2
[function]
[call site]
03742
cram_decode_slice_thread
[function]
[call site]
03743
cram_decode_slice
[function]
[call site]
03744
__errno_location
[call site]
03745
__errno_location
[call site]
03746
cram_free_slice
[function]
[call site]
03747
hts_tpool_process_len
[function]
[call site]
03748
pthread_mutex_lock
[call site]
03749
pthread_mutex_unlock
[call site]
03750
hts_tpool_process_qsize
[function]
[call site]
03751
hts_tpool_process_empty
[function]
[call site]
03752
hts_tpool_next_result_wait
[function]
[call site]
03753
hts_tpool_result_data
[function]
[call site]
03754
hts_log
[function]
[call site]
03755
hts_tpool_result_data
[function]
[call site]
03756
hts_log
[function]
[call site]
03757
hts_tpool_delete_result
[function]
[call site]
03758
hts_tpool_delete_result
[function]
[call site]
03759
cram_free_slice
[function]
[call site]
03760
cram_free_slice
[function]
[call site]
03761
cram_to_bam
[function]
[call site]
03762
strlen
[call site]
03763
append_uint64
[function]
[call site]
03764
append_uint32
[function]
[call site]
03765
append_uint32
[function]
[call site]
03766
append_sub32
[function]
[call site]
03767
append_uint32
[function]
[call site]
03768
append_sub32
[function]
[call site]
03769
append_uint64
[function]
[call site]
03770
bam_set1
[function]
[call site]
03771
bam_cigar2rqlens
[function]
[call site]
03772
hts_log
[function]
[call site]
03773
__errno_location
[call site]
03774
hts_log
[function]
[call site]
03775
__errno_location
[call site]
03776
hts_log
[function]
[call site]
03777
__errno_location
[call site]
03778
hts_log
[function]
[call site]
03779
__errno_location
[call site]
03780
subtract_check_underflow
[function]
[call site]
03781
subtract_check_underflow
[function]
[call site]
03782
subtract_check_underflow
[function]
[call site]
03783
subtract_check_underflow
[function]
[call site]
03784
subtract_check_underflow
[function]
[call site]
03785
hts_log
[function]
[call site]
03786
__errno_location
[call site]
03787
realloc_bam_data
[function]
[call site]
03788
hts_reg2bin
[function]
[call site]
03789
strncpy
[call site]
03790
cram_eof
[function]
[call site]
03791
bam_tag2cigar
[function]
[call site]
03792
sam_read1_sam
[function]
[call site]
03793
sam_parse1
[function]
[call site]
03794
strchr
[call site]
03795
hts_log
[function]
[call site]
03796
hts_log
[function]
[call site]
03797
possibly_expand_bam_data
[function]
[call site]
03798
parse_sam_flag
[function]
[call site]
03799
hts_str2uint
[function]
[call site]
03800
strtoul
[call site]
03801
strchr
[call site]
03802
strcmp
[call site]
03803
hts_log
[function]
[call site]
03804
bam_name2id
[function]
[call site]
03805
sam_hdr_name2tid
[function]
[call site]
03806
sam_hdr_fill_hrecs
[function]
[call site]
03807
kh_get_m_s2i
[function]
[call site]
03808
hts_log
[function]
[call site]
03809
hts_strprint
[function]
[call site]
03810
isprint_c
[function]
[call site]
03811
__ctype_b_loc
[call site]
03812
strcpy
[call site]
03813
snprintf
[call site]
03814
hts_log
[function]
[call site]
03815
hts_str2uint
[function]
[call site]
03816
hts_log
[function]
[call site]
03817
hts_str2uint
[function]
[call site]
03818
bam_parse_cigar
[function]
[call site]
03819
hts_log
[function]
[call site]
03820
read_ncigar
[function]
[call site]
03821
isdigit_c
[function]
[call site]
03822
hts_log
[function]
[call site]
03823
possibly_expand_bam_data
[function]
[call site]
03824
hts_log
[function]
[call site]
03825
parse_cigar
[function]
[call site]
03826
hts_str2uint
[function]
[call site]
03827
hts_log
[function]
[call site]
03828
hts_log
[function]
[call site]
03829
hts_log
[function]
[call site]
03830
bam_cigar2rlen
[function]
[call site]
03831
hts_log
[function]
[call site]
03832
strchr
[call site]
03833
hts_log
[function]
[call site]
03834
hts_reg2bin
[function]
[call site]
03835
strchr
[call site]
03836
strcmp
[call site]
03837
strcmp
[call site]
03838
bam_name2id
[function]
[call site]
03839
hts_log
[function]
[call site]
03840
hts_strprint
[function]
[call site]
03841
hts_log
[function]
[call site]
03842
hts_str2uint
[function]
[call site]
03843
hts_log
[function]
[call site]
03844
hts_str2int
[function]
[call site]
03845
hts_log
[function]
[call site]
03846
strchr
[call site]
03847
strcmp
[call site]
03848
hts_log
[function]
[call site]
03849
bam_cigar2qlen
[function]
[call site]
03850
hts_log
[function]
[call site]
03851
possibly_expand_bam_data
[function]
[call site]
03852
possibly_expand_bam_data
[function]
[call site]
03853
hts_log
[function]
[call site]
03854
hts_log
[function]
[call site]
03855
aux_parse
[function]
[call site]
03856
hts_log
[function]
[call site]
03857
isspace_c
[function]
[call site]
03858
hts_log
[function]
[call site]
03859
isspace_c
[function]
[call site]
03860
isspace_c
[function]
[call site]
03861
kh_get_tag
[function]
[call site]
03862
possibly_expand_bam_data
[function]
[call site]
03863
isspace_c
[function]
[call site]
03864
hts_log
[function]
[call site]
03865
possibly_expand_bam_data
[function]
[call site]
03866
hts_str2int
[function]
[call site]
03867
i16_to_le
[function]
[call site]
03868
u16_to_le
[function]
[call site]
03869
i32_to_le
[function]
[call site]
03870
u32_to_le
[function]
[call site]
03871
hts_str2uint
[function]
[call site]
03872
u16_to_le
[function]
[call site]
03873
u32_to_le
[function]
[call site]
03874
strtod
[call site]
03875
float_to_le
[function]
[call site]
03876
u32_to_le
[function]
[call site]
03877
strtod
[call site]
03878
double_to_le
[function]
[call site]
03879
u64_to_le
[function]
[call site]
03880
strchr
[call site]
03881
strlen
[call site]
03882
isspace_c
[function]
[call site]
03883
hts_log
[function]
[call site]
03884
possibly_expand_bam_data
[function]
[call site]
03885
isspace_c
[function]
[call site]
03886
hts_log
[function]
[call site]
03887
sam_parse_B_vals
[function]
[call site]
03888
sam_parse_B_vals_r
[function]
[call site]
03889
hts_log
[function]
[call site]
03890
aux_type2size
[function]
[call site]
03891
hts_log
[function]
[call site]
03892
possibly_expand_bam_data
[function]
[call site]
03893
hts_log
[function]
[call site]
03894
sam_parse_Bc_vals
[function]
[call site]
03895
grow_B_array
[function]
[call site]
03896
__errno_location
[call site]
03897
possibly_expand_bam_data
[function]
[call site]
03898
hts_log
[function]
[call site]
03899
hts_str2int
[function]
[call site]
03900
sam_parse_BC_vals
[function]
[call site]
03901
grow_B_array
[function]
[call site]
03902
hts_str2uint
[function]
[call site]
03903
sam_parse_Bs_vals
[function]
[call site]
03904
grow_B_array
[function]
[call site]
03905
hts_str2int
[function]
[call site]
03906
i16_to_le
[function]
[call site]
03907
sam_parse_BS_vals
[function]
[call site]
03908
grow_B_array
[function]
[call site]
03909
hts_str2uint
[function]
[call site]
03910
u16_to_le
[function]
[call site]
03911
sam_parse_Bi_vals
[function]
[call site]
03912
grow_B_array
[function]
[call site]
03913
hts_str2int
[function]
[call site]
03914
i32_to_le
[function]
[call site]
03915
sam_parse_BI_vals
[function]
[call site]
03916
grow_B_array
[function]
[call site]
03917
hts_str2uint
[function]
[call site]
03918
u32_to_le
[function]
[call site]
03919
sam_parse_Bf_vals
[function]
[call site]
03920
grow_B_array
[function]
[call site]
03921
strtod
[call site]
03922
float_to_le
[function]
[call site]
03923
hts_log
[function]
[call site]
03924
i32_to_le
[function]
[call site]
03925
hts_str2int
[function]
[call site]
03926
sam_parse_B_vals_r
[function]
[call site]
03927
sam_parse_B_vals_r
[function]
[call site]
03928
sam_parse_B_vals_r
[function]
[call site]
03929
sam_parse_B_vals_r
[function]
[call site]
03930
sam_parse_B_vals_r
[function]
[call site]
03931
sam_parse_B_vals_r
[function]
[call site]
03932
hts_log
[function]
[call site]
03933
isspace_c
[function]
[call site]
03934
hts_strprint
[function]
[call site]
03935
hts_log
[function]
[call site]
03936
isspace_c
[function]
[call site]
03937
hts_log
[function]
[call site]
03938
bam_tag2cigar
[function]
[call site]
03939
sam_state_destroy
[function]
[call site]
03940
__errno_location
[call site]
03941
bgzf_seek
[function]
[call site]
03942
bgzf_seek_common
[function]
[call site]
03943
sam_hdr_fill_hrecs
[function]
[call site]
03944
pthread_create
[call site]
03945
sam_dispatcher_read
[function]
[call site]
03946
ks_resize
[function]
[call site]
03947
pthread_mutex_lock
[call site]
03948
pthread_cond_signal
[call site]
03949
pthread_mutex_unlock
[call site]
03950
hts_tpool_process_shutdown
[function]
[call site]
03951
pthread_mutex_unlock
[call site]
03952
pthread_mutex_lock
[call site]
03953
pthread_mutex_unlock
[call site]
03954
calloc
[call site]
03955
realloc
[call site]
03956
bgzf_read
[function]
[call site]
03957
hread
[function]
[call site]
03958
__errno_location
[call site]
03959
sam_state_err
[function]
[call site]
03960
realloc
[call site]
03961
__assert_fail
[call site]
03962
__assert_fail
[call site]
03963
__assert_fail
[call site]
03964
ks_resize
[function]
[call site]
03965
hts_tpool_dispatch3
[function]
[call site]
03966
sam_parse_worker
[function]
[call site]
03967
pthread_mutex_lock
[call site]
03968
pthread_mutex_unlock
[call site]
03969
calloc
[call site]
03970
calloc
[call site]
03971
sam_state_err
[function]
[call site]
03972
sam_state_err
[function]
[call site]
03973
realloc
[call site]
03974
sam_state_err
[function]
[call site]
03975
strchr
[call site]
03976
sam_parse1
[function]
[call site]
03977
__errno_location
[call site]
03978
sam_state_err
[function]
[call site]
03979
cleanup_sp_lines
[function]
[call site]
03980
__assert_fail
[call site]
03981
sam_free_sp_bams
[function]
[call site]
03982
pthread_mutex_lock
[call site]
03983
pthread_mutex_unlock
[call site]
03984
sam_free_sp_bams
[function]
[call site]
03985
cleanup_sp_lines
[function]
[call site]
03986
cleanup_sp_bams
[function]
[call site]
03987
sam_free_sp_bams
[function]
[call site]
03988
pthread_mutex_lock
[call site]
03989
pthread_mutex_unlock
[call site]
03990
pthread_mutex_unlock
[call site]
03991
hts_tpool_dispatch
[function]
[call site]
03992
sam_parse_eof
[function]
[call site]
03993
pthread_mutex_lock
[call site]
03994
pthread_cond_wait
[call site]
03995
pthread_cond_signal
[call site]
03996
pthread_mutex_unlock
[call site]
03997
hts_tpool_process_shutdown
[function]
[call site]
03998
pthread_mutex_unlock
[call site]
03999
pthread_mutex_lock
[call site]
04000
pthread_cond_signal
[call site]
04001
pthread_mutex_unlock
[call site]
04002
pthread_mutex_lock
[call site]
04003
pthread_mutex_unlock
[call site]
04004
__errno_location
[call site]
04005
sam_state_err
[function]
[call site]
04006
hts_tpool_process_shutdown
[function]
[call site]
04007
hts_log
[function]
[call site]
04008
__errno_location
[call site]
04009
pthread_mutex_lock
[call site]
04010
pthread_mutex_unlock
[call site]
04011
hts_tpool_next_result_wait
[function]
[call site]
04012
hts_tpool_result_data
[function]
[call site]
04013
hts_tpool_delete_result
[function]
[call site]
04014
pthread_mutex_lock
[call site]
04015
pthread_mutex_unlock
[call site]
04016
bam_copy1
[function]
[call site]
04017
realloc_bam_data
[function]
[call site]
04018
pthread_mutex_lock
[call site]
04019
pthread_mutex_unlock
[call site]
04020
hts_getline
[function]
[call site]
04021
sam_parse1
[function]
[call site]
04022
hts_log
[function]
[call site]
04023
fastq_state_init
[function]
[call site]
04024
fastq_parse1
[function]
[call site]
04025
hts_getline
[function]
[call site]
04026
strpbrk
[call site]
04027
isspace_c
[function]
[call site]
04028
isspace_c
[function]
[call site]
04029
hts_getline
[function]
[call site]
04030
kputsn
[function]
[call site]
04031
hts_getline
[function]
[call site]
04032
kputsn
[function]
[call site]
04033
isdigit_c
[function]
[call site]
04034
regexec
[call site]
04035
hts_log
[function]
[call site]
04036
isalpha_c
[function]
[call site]
04037
bam_set1
[function]
[call site]
04038
bam_aux_append
[function]
[call site]
04039
__assert_fail
[call site]
04040
realloc_bam_data
[function]
[call site]
04041
__errno_location
[call site]
04042
isdigit_c
[function]
[call site]
04043
strtol
[call site]
04044
isdigit_c
[function]
[call site]
04045
isspace_c
[function]
[call site]
04046
bam_aux_append
[function]
[call site]
04047
aux_parse
[function]
[call site]
04048
__errno_location
[call site]
04049
__errno_location
[call site]
04050
sam_passes_filter
[function]
[call site]
04051
hts_filter_eval2
[function]
[call site]
04052
ks_free
[function]
[call site]
04053
hts_filter_eval_
[function]
[call site]
04054
expression
[function]
[call site]
04055
and_expr
[function]
[call site]
04056
eq_expr
[function]
[call site]
04057
cmp_expr
[function]
[call site]
04058
bitor_expr
[function]
[call site]
04059
bitxor_expr
[function]
[call site]
04060
bitand_expr
[function]
[call site]
04061
add_expr
[function]
[call site]
04062
mul_expr
[function]
[call site]
04063
unary_expr
[function]
[call site]
04064
ws
[function]
[call site]
04065
simple_expr
[function]
[call site]
04066
ws
[function]
[call site]
04067
expression
[function]
[call site]
04068
ws
[function]
[call site]
04069
fprintf
[call site]
04070
hts_str2dbl
[function]
[call site]
04071
ks_clear
[function]
[call site]
04075
kputsn
[function]
[call site]
04076
func_expr
[function]
[call site]
04077
strncmp
[call site]
04078
expression
[function]
[call site]
04079
expr_func_avg
[function]
[call site]
04080
strncmp
[call site]
04081
expression
[function]
[call site]
04082
ws
[function]
[call site]
04083
expression
[function]
[call site]
04084
hts_expr_val_existsT
[function]
[call site]
04085
hts_expr_val_exists
[function]
[call site]
04086
hts_expr_val_free
[function]
[call site]
04087
ks_free
[function]
[call site]
04088
strncmp
[call site]
04089
expression
[function]
[call site]
04090
hts_expr_val_existsT
[function]
[call site]
04091
strncmp
[call site]
04092
expression
[function]
[call site]
04093
exp
[call site]
04094
hts_expr_val_undef
[function]
[call site]
04095
ks_clear
[function]
[call site]
04096
strncmp
[call site]
04097
expression
[function]
[call site]
04098
expr_func_length
[function]
[call site]
04099
strncmp
[call site]
04100
expression
[function]
[call site]
04101
log
[call site]
04102
hts_expr_val_undef
[function]
[call site]
04103
strncmp
[call site]
04104
expression
[function]
[call site]
04105
expr_func_min
[function]
[call site]
04106
strncmp
[call site]
04107
expression
[function]
[call site]
04108
expr_func_max
[function]
[call site]
04109
strncmp
[call site]
04110
expression
[function]
[call site]
04111
ws
[function]
[call site]
04112
expression
[function]
[call site]
04113
hts_expr_val_exists
[function]
[call site]
04114
hts_expr_val_undef
[function]
[call site]
04115
hts_expr_val_free
[function]
[call site]
04116
pow
[call site]
04117
hts_expr_val_free
[function]
[call site]
04118
hts_expr_val_undef
[function]
[call site]
04119
strncmp
[call site]
04120
expression
[function]
[call site]
04121
sqrt
[call site]
04122
hts_expr_val_undef
[function]
[call site]
04123
ws
[function]
[call site]
04124
fprintf
[call site]
04125
hts_expr_val_exists
[function]
[call site]
04126
hts_expr_val_undef
[function]
[call site]
04127
unary_expr
[function]
[call site]
04128
hts_expr_val_exists
[function]
[call site]
04129
unary_expr
[function]
[call site]
04130
hts_expr_val_exists
[function]
[call site]
04131
hts_expr_val_undef
[function]
[call site]
04132
hts_expr_val_exists
[function]
[call site]
04133
hts_expr_val_undef
[function]
[call site]
04134
simple_expr
[function]
[call site]
04135
ws
[function]
[call site]
04136
unary_expr
[function]
[call site]
04137
hts_expr_val_exists
[function]
[call site]
04138
hts_expr_val_undef
[function]
[call site]
04139
hts_expr_val_free
[function]
[call site]
04140
hts_expr_val_undef
[function]
[call site]
04141
hts_expr_val_exists
[function]
[call site]
04142
hts_expr_val_free
[function]
[call site]
04143
ws
[function]
[call site]
04144
mul_expr
[function]
[call site]
04145
hts_expr_val_exists
[function]
[call site]
04146
hts_expr_val_free
[function]
[call site]
04147
hts_expr_val_undef
[function]
[call site]
04148
hts_expr_val_free
[function]
[call site]
04149
ws
[function]
[call site]
04150
add_expr
[function]
[call site]
04151
hts_expr_val_exists
[function]
[call site]
04152
hts_expr_val_free
[function]
[call site]
04153
hts_expr_val_free
[function]
[call site]
04154
hts_expr_val_undef
[function]
[call site]
04155
ws
[function]
[call site]
04156
bitand_expr
[function]
[call site]
04157
hts_expr_val_exists
[function]
[call site]
04158
hts_expr_val_free
[function]
[call site]
04159
hts_expr_val_free
[function]
[call site]
04160
hts_expr_val_undef
[function]
[call site]
04161
ws
[function]
[call site]
04162
bitxor_expr
[function]
[call site]
04163
hts_expr_val_exists
[function]
[call site]
04164
hts_expr_val_free
[function]
[call site]
04165
hts_expr_val_free
[function]
[call site]
04166
hts_expr_val_undef
[function]
[call site]
04167
ws
[function]
[call site]
04168
cmp_expr
[function]
[call site]
04169
hts_expr_val_exists
[function]
[call site]
04170
hts_expr_val_undef
[function]
[call site]
04171
strcmp
[call site]
04172
cmp_expr
[function]
[call site]
04173
hts_expr_val_exists
[function]
[call site]
04174
hts_expr_val_undef
[function]
[call site]
04175
strcmp
[call site]
04176
cmp_expr
[function]
[call site]
04177
hts_expr_val_exists
[function]
[call site]
04178
hts_expr_val_undef
[function]
[call site]
04179
strcmp
[call site]
04180
cmp_expr
[function]
[call site]
04181
hts_expr_val_exists
[function]
[call site]
04182
hts_expr_val_undef
[function]
[call site]
04183
strcmp
[call site]
04184
hts_expr_val_exists
[function]
[call site]
04185
hts_expr_val_undef
[function]
[call site]
04186
hts_expr_val_free
[function]
[call site]
04187
ws
[function]
[call site]
04188
eq_expr
[function]
[call site]
04189
hts_expr_val_exists
[function]
[call site]
04190
hts_expr_val_undef
[function]
[call site]
04191
strcmp
[call site]
04192
eq_expr
[function]
[call site]
04193
hts_expr_val_exists
[function]
[call site]
04194
hts_expr_val_undef
[function]
[call site]
04195
strcmp
[call site]
04196
eq_expr
[function]
[call site]
04197
hts_expr_val_free
[function]
[call site]
04198
regcomp
[call site]
04199
regerror
[call site]
04200
fprintf
[call site]
04201
hts_expr_val_free
[function]
[call site]
04202
regexec
[call site]
04203
regfree
[call site]
04204
hts_expr_val_exists
[function]
[call site]
04205
hts_expr_val_undef
[function]
[call site]
04206
hts_expr_val_free
[function]
[call site]
04207
ws
[function]
[call site]
04208
eq_expr
[function]
[call site]
04209
hts_expr_val_existsT
[function]
[call site]
04210
hts_expr_val_undef
[function]
[call site]
04211
eq_expr
[function]
[call site]
04212
hts_expr_val_existsT
[function]
[call site]
04213
hts_expr_val_undef
[function]
[call site]
04214
hts_expr_val_existsT
[function]
[call site]
04215
hts_expr_val_undef
[function]
[call site]
04216
hts_expr_val_existsT
[function]
[call site]
04217
hts_expr_val_undef
[function]
[call site]
04218
hts_expr_val_free
[function]
[call site]
04219
ws
[function]
[call site]
04220
fprintf
[call site]
04221
hts_expr_val_exists
[function]
[call site]
04222
bam_sym_lookup
[function]
[call site]
04223
memcmp
[call site]
04224
ks_clear
[function]
[call site]
04225
kputw
[function]
[call site]
04226
kputc_
[function]
[call site]
04227
kputs
[function]
[call site]
04228
kputs
[function]
[call site]
04229
memcmp
[call site]
04230
bam_endpos
[function]
[call site]
04231
memcmp
[call site]
04232
memcmp
[call site]
04233
memcmp
[call site]
04234
memcmp
[call site]
04235
memcmp
[call site]
04236
memcmp
[call site]
04237
memcmp
[call site]
04238
memcmp
[call site]
04239
memcmp
[call site]
04240
memcmp
[call site]
04241
memcmp
[call site]
04242
memcmp
[call site]
04243
memcmp
[call site]
04244
hts_log
[function]
[call site]
04245
memcmp
[call site]
04246
memcmp
[call site]
04247
bam_get_library
[function]
[call site]
04248
bam_aux_get
[function]
[call site]
04249
sam_hdr_find_tag_id
[function]
[call site]
04250
ks_clear
[function]
[call site]
04251
kputs
[function]
[call site]
04252
memcmp
[call site]
04253
memcmp
[call site]
04254
memcmp
[call site]
04255
sam_hdr_tid2name
[function]
[call site]
04256
ks_clear
[function]
[call site]
04257
kputs
[function]
[call site]
04258
memcmp
[call site]
04259
memcmp
[call site]
04260
memcmp
[call site]
04261
memcmp
[call site]
04262
memcmp
[call site]
04263
bam_cigar2qlen
[function]
[call site]
04264
memcmp
[call site]
04265
ks_clear
[function]
[call site]
04266
kputs
[function]
[call site]
04267
memcmp
[call site]
04268
ks_clear
[function]
[call site]
04269
ks_resize
[function]
[call site]
04270
memcmp
[call site]
04271
bam_cigar2rlen
[function]
[call site]
04272
memcmp
[call site]
04273
sam_hdr_tid2name
[function]
[call site]
04274
ks_clear
[function]
[call site]
04275
kputs
[function]
[call site]
04276
memcmp
[call site]
04277
sam_hdr_tid2name
[function]
[call site]
04278
ks_clear
[function]
[call site]
04279
kputs
[function]
[call site]
04280
memcmp
[call site]
04281
memcmp
[call site]
04282
ks_clear
[function]
[call site]
04283
ks_resize
[function]
[call site]
04284
nibble2base
[function]
[call site]
04285
memcmp
[call site]
04286
memcmp
[call site]
04287
bam_aux_get
[function]
[call site]
04288
ks_clear
[function]
[call site]
04289
kputs
[function]
[call site]
04290
ks_clear
[function]
[call site]
04291
kputsn
[function]
[call site]
04292
bam_aux2i
[function]
[call site]
04293
get_int_aux_val
[function]
[call site]
04294
le_to_i8
[function]
[call site]
04295
le_to_i16
[function]
[call site]
04296
le_to_u16
[function]
[call site]
04297
le_to_i32
[function]
[call site]
04298
le_to_u32
[function]
[call site]
04299
__errno_location
[call site]
04300
bam_aux2f
[function]
[call site]
04301
le_to_double
[function]
[call site]
04302
le_to_float
[function]
[call site]
04303
get_int_aux_val
[function]
[call site]
04304
hts_log
[function]
[call site]
04305
hts_log
[function]
[call site]
04306
hts_expr_val_free
[function]
[call site]
04307
hts_expr_val_free
[function]
[call site]
04308
sam_write1
[function]
[call site]
04309
bam_write_idx1
[function]
[call site]
04310
bam_write1
[function]
[call site]
04311
hts_log
[function]
[call site]
04312
__errno_location
[call site]
04313
hts_log
[function]
[call site]
04314
bgzf_flush_try
[function]
[call site]
04315
lazy_flush
[function]
[call site]
04316
ed_swap_4p
[function]
[call site]
04317
ed_swap_4p
[function]
[call site]
04318
bgzf_write_small
[function]
[call site]
04319
bgzf_write
[function]
[call site]
04320
swap_data
[function]
[call site]
04321
bgzf_write_small
[function]
[call site]
04322
bgzf_write_small
[function]
[call site]
04323
bgzf_write_small
[function]
[call site]
04324
bgzf_write_small
[function]
[call site]
04325
bam_cigar2rlen
[function]
[call site]
04326
hts_log
[function]
[call site]
04327
u32_to_le
[function]
[call site]
04328
u32_to_le
[function]
[call site]
04329
bgzf_write_small
[function]
[call site]
04330
bgzf_write_small
[function]
[call site]
04331
bgzf_write_small
[function]
[call site]
04332
u32_to_le
[function]
[call site]
04333
bgzf_write_small
[function]
[call site]
04334
bgzf_write_small
[function]
[call site]
04335
swap_data
[function]
[call site]
04336
bgzf_flush_try
[function]
[call site]
04337
hts_idx_amend_last
[function]
[call site]
04338
bam_write1
[function]
[call site]
04339
bam_endpos
[function]
[call site]
04340
bgzf_idx_push
[function]
[call site]
04341
hts_idx_push
[function]
[call site]
04342
hts_idx_check_range
[function]
[call site]
04343
hts_idx_maxpos
[function]
[call site]
04344
hts_bin_maxpos
[function]
[call site]
04345
hts_log
[function]
[call site]
04346
idx_format_name
[function]
[call site]
04347
hts_log
[function]
[call site]
04348
__errno_location
[call site]
04349
realloc
[call site]
04350
realloc
[call site]
04351
hts_log
[function]
[call site]
04352
hts_log
[function]
[call site]
04353
hts_log
[function]
[call site]
04354
hts_log
[function]
[call site]
04355
kh_init_bin
[function]
[call site]
04356
calloc
[call site]
04357
insert_to_l
[function]
[call site]
04358
realloc
[call site]
04359
hts_reg2bin
[function]
[call site]
04360
insert_to_b
[function]
[call site]
04361
kh_put_bin
[function]
[call site]
04362
kh_resize_bin
[function]
[call site]
04363
realloc
[call site]
04364
calloc
[call site]
04365
kh_del_bin
[function]
[call site]
04366
realloc
[call site]
04367
insert_to_b
[function]
[call site]
04368
insert_to_b
[function]
[call site]
04369
hts_idx_check_range
[function]
[call site]
04370
pthread_mutex_lock
[call site]
04371
realloc
[call site]
04372
pthread_mutex_unlock
[call site]
04373
pthread_mutex_unlock
[call site]
04374
sam_hdr_tid2name
[function]
[call site]
04375
sam_hdr_tid2len
[function]
[call site]
04376
kh_get_s2i
[function]
[call site]
04377
hts_log
[function]
[call site]
04378
cram_put_bam_seq
[function]
[call site]
04379
cram_new_container
[function]
[call site]
04380
pthread_mutex_lock
[call site]
04381
pthread_mutex_unlock
[call site]
04382
hts_log
[function]
[call site]
04383
pthread_mutex_lock
[call site]
04384
hts_log
[function]
[call site]
04385
pthread_mutex_unlock
[call site]
04386
cram_next_container
[function]
[call site]
04387
cram_update_curr_slice
[function]
[call site]
04388
hts_log
[function]
[call site]
04389
cram_flush_container_mt
[function]
[call site]
04390
cram_free_slice
[function]
[call site]
04391
cram_free_container
[function]
[call site]
04392
cram_new_container
[function]
[call site]
04393
pthread_mutex_unlock
[call site]
04394
cram_new_slice
[function]
[call site]
04395
calloc
[call site]
04396
calloc
[call site]
04397
cram_new_block
[function]
[call site]
04398
cram_new_block
[function]
[call site]
04399
cram_new_block
[function]
[call site]
04400
cram_new_block
[function]
[call site]
04401
cram_new_block
[function]
[call site]
04402
cram_new_block
[function]
[call site]
04403
string_pool_create
[function]
[call site]
04404
kh_init_m_s2i
[function]
[call site]
04405
kh_init_m_s2i
[function]
[call site]
04406
cram_free_slice
[function]
[call site]
04407
pthread_mutex_lock
[call site]
04408
hts_log
[function]
[call site]
04409
pthread_mutex_unlock
[call site]
04410
pthread_mutex_lock
[call site]
04411
calloc
[call site]
04412
pthread_mutex_unlock
[call site]
04413
pthread_mutex_lock
[call site]
04414
calloc
[call site]
04415
pthread_mutex_unlock
[call site]
04416
pthread_mutex_lock
[call site]
04417
pthread_mutex_unlock
[call site]
04418
pthread_mutex_lock
[call site]
04419
calloc
[call site]
04420
pthread_mutex_unlock
[call site]
04421
pthread_mutex_unlock
[call site]
04422
bam_copy1
[function]
[call site]
04423
bam_dup1
[function]
[call site]
04424
bam_init1
[function]
[call site]
04425
bam_copy1
[function]
[call site]
04426
bam_destroy1
[function]
[call site]
04427
bam_cigar2qlen
[function]
[call site]
04428
hts_log
[function]
[call site]
04429
pthread_create
[call site]
04430
sam_dispatcher_write
[function]
[call site]
04431
hts_tpool_next_result_wait
[function]
[call site]
04432
hts_tpool_result_data
[function]
[call site]
04433
sam_state_err
[function]
[call site]
04434
bgzf_flush_try
[function]
[call site]
04435
bgzf_write
[function]
[call site]
04436
hwrite
[function]
[call site]
04437
bam_endpos
[function]
[call site]
04438
bgzf_idx_push
[function]
[call site]
04439
__errno_location
[call site]
04440
sam_state_err
[function]
[call site]
04441
sam_hdr_tid2name
[function]
[call site]
04442
sam_hdr_tid2len
[function]
[call site]
04443
hts_log
[function]
[call site]
04444
bam_endpos
[function]
[call site]
04445
hts_idx_push
[function]
[call site]
04446
__errno_location
[call site]
04447
sam_state_err
[function]
[call site]
04448
sam_hdr_tid2name
[function]
[call site]
04449
sam_hdr_tid2len
[function]
[call site]
04450
hts_log
[function]
[call site]
04451
__assert_fail
[call site]
04452
pthread_mutex_lock
[call site]
04453
bgzf_write
[function]
[call site]
04454
bgzf_flush_try
[function]
[call site]
04455
bgzf_write
[function]
[call site]
04456
hwrite
[function]
[call site]
04457
hts_tpool_delete_result
[function]
[call site]
04458
pthread_mutex_lock
[call site]
04459
pthread_mutex_unlock
[call site]
04460
sam_state_err
[function]
[call site]
04461
hts_tpool_process_shutdown
[function]
[call site]
04462
__errno_location
[call site]
04463
sam_state_err
[function]
[call site]
04464
pthread_mutex_lock
[call site]
04465
pthread_mutex_unlock
[call site]
04466
pthread_mutex_unlock
[call site]
04467
calloc
[call site]
04468
calloc
[call site]
04469
bam_copy1
[function]
[call site]
04470
pthread_mutex_lock
[call site]
04471
pthread_mutex_unlock
[call site]
04472
hts_tpool_dispatch3
[function]
[call site]
04473
sam_format_worker
[function]
[call site]
04474
cleanup_sp_bams
[function]
[call site]
04475
cleanup_sp_lines
[function]
[call site]
04476
pthread_mutex_unlock
[call site]
04477
pthread_mutex_unlock
[call site]
04478
sam_format1
[function]
[call site]
04479
sam_format1_append
[function]
[call site]
04480
kputc
[function]
[call site]
04481
bgzf_flush_try
[function]
[call site]
04482
bgzf_write
[function]
[call site]
04483
hwrite
[function]
[call site]
04484
bam_endpos
[function]
[call site]
04485
bgzf_idx_push
[function]
[call site]
04486
sam_hdr_tid2name
[function]
[call site]
04487
sam_hdr_tid2len
[function]
[call site]
04488
hts_log
[function]
[call site]
04489
bam_endpos
[function]
[call site]
04490
hts_idx_push
[function]
[call site]
04491
sam_hdr_tid2name
[function]
[call site]
04492
sam_hdr_tid2len
[function]
[call site]
04493
hts_log
[function]
[call site]
04494
fastq_state_init
[function]
[call site]
04495
fastq_format1
[function]
[call site]
04496
kputc
[function]
[call site]
04497
kputs
[function]
[call site]
04498
bam_aux_get
[function]
[call site]
04499
kputc
[function]
[call site]
04500
isalpha_c
[function]
[call site]
04501
toupper_c
[function]
[call site]
04502
kputc
[function]
[call site]
04503
kputs
[function]
[call site]
04504
kputs
[function]
[call site]
04505
kputs
[function]
[call site]
04506
bam_aux_get
[function]
[call site]
04507
ksprintf
[function]
[call site]
04508
isupper_c
[function]
[call site]
04509
__ctype_b_loc
[call site]
04510
islower_c
[function]
[call site]
04511
__ctype_b_loc
[call site]
04512
hts_log
[function]
[call site]
04513
strlen
[call site]
04514
strlen
[call site]
04515
isalpha_c
[function]
[call site]
04516
islower_c
[function]
[call site]
04517
toupper_c
[function]
[call site]
04518
kh_get_tag
[function]
[call site]
04519
kputc_
[function]
[call site]
04520
sam_format_aux1
[function]
[call site]
04521
skip_aux
[function]
[call site]
04522
kputsn
[function]
[call site]
04523
ks_resize
[function]
[call site]
04524
kputc_
[function]
[call site]
04525
kputc_
[function]
[call site]
04526
kputc_
[function]
[call site]
04527
kputsn
[function]
[call site]
04528
kputc_
[function]
[call site]
04529
kputc_
[function]
[call site]
04530
kputc_
[function]
[call site]
04531
kputc
[function]
[call site]
04532
bgzf_flush_try
[function]
[call site]
04533
bgzf_write
[function]
[call site]
04534
hwrite
[function]
[call site]
04535
__errno_location
[call site]
04536
bam_destroy1
[function]
[call site]
04537
sam_hdr_destroy
[function]
[call site]
04538
hts_close_or_abort
[function]
[call site]
04539
hts_close
[function]
[call site]
04540
hts_close
[function]
[call site]
04541
view_sam
[function]
[call site]
04542
view_sam
[function]
[call site]
04543
view_vcf
[function]
[call site]
04544
abort
[call site]
04545
hopen
[function]
[call site]
04546
hts_hopen
[function]
[call site]
04547
hclose
[function]
[call site]
04548
abort
[call site]
04549
hts_open
[function]
[call site]
04550
abort
[call site]
04551
bcf_hdr_read
[function]
[call site]
04552
vcf_hdr_read
[function]
[call site]
04553
bcf_hdr_init
[function]
[call site]
04554
calloc
[call site]
04555
kh_init_vdict
[function]
[call site]
04556
calloc
[call site]
04557
kh_resize_vdict
[function]
[call site]
04558
realloc
[call site]
04559
__ac_FNV1a_hash_string
[function]
[call site]
04560
calloc
[call site]
04561
kh_init_hdict
[function]
[call site]
04562
strchr
[call site]
04563
bcf_hdr_append
[function]
[call site]
04564
bcf_hdr_parse_line
[function]
[call site]
04565
calloc
[call site]
04566
isalpha_c
[function]
[call site]
04567
isalnum_c
[function]
[call site]
04568
bcf_hrec_add_key
[function]
[call site]
04569
is_escaped
[function]
[call site]
04573
hts_strprint
[function]
[call site]
04574
hts_log
[function]
[call site]
04575
bcf_hrec_set_val
[function]
[call site]
04576
__errno_location
[call site]
04577
__errno_location
[call site]
04578
hts_log
[function]
[call site]
04579
isspace_c
[function]
[call site]
04580
hts_strprint
[function]
[call site]
04581
hts_log
[function]
[call site]
04582
bcf_hrec_destroy
[function]
[call site]
04583
hts_strprint
[function]
[call site]
04584
hts_log
[function]
[call site]
04585
bcf_hrec_destroy
[function]
[call site]
04586
bcf_hdr_add_hrec
[function]
[call site]
04587
get_hdr_aux
[function]
[call site]
04588
bcf_hrec_check
[function]
[call site]
04589
bcf_hrec_set_type
[function]
[call site]
04590
strcmp
[call site]
04591
strcmp
[call site]
04592
strcmp
[call site]
04593
strcmp
[call site]
04594
bcf_hrec_find_key
[function]
[call site]
04595
strcasecmp
[call site]
04596
bcf_hrec_find_key
[function]
[call site]
04597
strcmp
[call site]
04598
bcf_hrec_find_key
[function]
[call site]
04599
hts_log
[function]
[call site]
04600
hts_log
[function]
[call site]
04601
hts_log
[function]
[call site]
04602
bcf_hdr_register_hrec
[function]
[call site]
04603
bcf_hrec_set_type
[function]
[call site]
04604
bcf_hrec_find_key
[function]
[call site]
04605
strtoll
[call site]
04606
bcf_hrec_find_key
[function]
[call site]
04607
strdup
[call site]
04608
kh_get_vdict
[function]
[call site]
04609
strcmp
[call site]
04610
kh_put_vdict
[function]
[call site]
04611
kh_resize_vdict
[function]
[call site]
04612
bcf_hrec_find_key
[function]
[call site]
04613
strtol
[call site]
04614
kh_del_vdict
[function]
[call site]
04615
hts_log
[function]
[call site]
04616
bcf_hdr_set_idx
[function]
[call site]
04617
hts_log
[function]
[call site]
04618
__errno_location
[call site]
04619
hts_resize_array_
[function]
[call site]
04620
hts_log
[function]
[call site]
04621
__errno_location
[call site]
04622
realloc
[call site]
04623
__errno_location
[call site]
04624
__errno_location
[call site]
04625
strerror
[call site]
04626
hts_log
[function]
[call site]
04627
__errno_location
[call site]
04628
abort
[call site]
04629
abort
[call site]
04630
kh_del_vdict
[function]
[call site]
04631
hrec_add_idx
[function]
[call site]
04632
realloc
[call site]
04633
realloc
[call site]
04634
strdup
[call site]
04635
kputw
[function]
[call site]
04636
strcmp
[call site]
04637
strcmp
[call site]
04638
strtol
[call site]
04639
hts_log
[function]
[call site]
04640
strcmp
[call site]
04641
strcmp
[call site]
04642
strcmp
[call site]
04643
strcmp
[call site]
04644
strcmp
[call site]
04645
strcmp
[call site]
04646
hts_log
[function]
[call site]
04647
strcmp
[call site]
04648
strcmp
[call site]
04649
strcmp
[call site]
04650
strcmp
[call site]
04651
strcmp
[call site]
04652
strcmp
[call site]
04653
strcmp
[call site]
04654
strcmp
[call site]
04655
strcmp
[call site]
04656
strcmp
[call site]
04657
__isoc99_sscanf
[call site]
04658
hts_log
[function]
[call site]
04659
hts_log
[function]
[call site]
04660
hts_log
[function]
[call site]
04661
strdup
[call site]
04662
kh_get_vdict
[function]
[call site]
04663
hrec_add_idx
[function]
[call site]
04664
kh_put_vdict
[function]
[call site]
04665
bcf_hdr_set_idx
[function]
[call site]
04666
kh_del_vdict
[function]
[call site]
04667
hrec_add_idx
[function]
[call site]
04668
bcf_hrec_destroy
[function]
[call site]
04669
ksprintf
[function]
[call site]
04670
kh_get_hdict
[function]
[call site]
04671
__ac_FNV1a_hash_string
[function]
[call site]
04672
bcf_hrec_destroy
[function]
[call site]
04673
strcmp
[call site]
04674
bcf_get_version
[function]
[call site]
04675
get_hdr_aux
[function]
[call site]
04676
bcf_hdr_get_version
[function]
[call site]
04677
bcf_hdr_get_hrec
[function]
[call site]
04678
ksprintf
[function]
[call site]
04679
get_hdr_aux
[function]
[call site]
04680
kh_get_hdict
[function]
[call site]
04681
strcmp
[call site]
04682
strcmp
[call site]
04683
ksprintf
[function]
[call site]
04684
get_hdr_aux
[function]
[call site]
04685
kh_get_hdict
[function]
[call site]
04686
strcmp
[call site]
04687
bcf_hrec_find_key
[function]
[call site]
04688
strcmp
[call site]
04689
kh_get_vdict
[function]
[call site]
04690
hts_log
[function]
[call site]
04691
strstr
[call site]
04692
strchr
[call site]
04693
strtol
[call site]
04694
__errno_location
[call site]
04695
__errno_location
[call site]
04696
strtol
[call site]
04697
__errno_location
[call site]
04698
__errno_location
[call site]
04699
bcf_hrec_find_key
[function]
[call site]
04700
ksprintf
[function]
[call site]
04701
kh_get_hdict
[function]
[call site]
04702
bcf_hrec_destroy
[function]
[call site]
04703
realloc
[call site]
04704
bcf_hdr_unregister_hrec
[function]
[call site]
04705
bcf_hrec_find_key
[function]
[call site]
04706
kh_get_vdict
[function]
[call site]
04707
kh_put_hdict
[function]
[call site]
04708
kh_resize_hdict
[function]
[call site]
04709
bcf_hdr_append
[function]
[call site]
04710
kh_destroy_vdict
[function]
[call site]
04711
hts_log
[function]
[call site]
04712
hts_getline
[function]
[call site]
04713
hts_log
[function]
[call site]
04714
hopen
[function]
[call site]
04715
hts_log
[function]
[call site]
04716
kgetline
[function]
[call site]
04717
hgets
[function]
[call site]
04718
strchr
[call site]
04719
kputs
[function]
[call site]
04720
kputsn
[function]
[call site]
04721
kputs
[function]
[call site]
04722
atol
[call site]
04723
kputl
[function]
[call site]
04724
kputll
[function]
[call site]
04725
kputsn
[function]
[call site]
04726
hclose
[function]
[call site]
04727
hts_log
[function]
[call site]
04728
kputsn
[function]
[call site]
04729
kputc
[function]
[call site]
04730
hts_log
[function]
[call site]
04731
bcf_hdr_parse
[function]
[call site]
04732
bcf_hdr_parse_line
[function]
[call site]
04733
strcasecmp
[call site]
04734
hts_log
[function]
[call site]
04735
bcf_hdr_add_hrec
[function]
[call site]
04736
bcf_hrec_destroy
[function]
[call site]
04737
bcf_hdr_parse_line
[function]
[call site]
04738
bcf_hdr_add_hrec
[function]
[call site]
04739
bcf_hrec_destroy
[function]
[call site]
04740
bcf_hdr_parse_line
[function]
[call site]
04741
bcf_hdr_add_hrec
[function]
[call site]
04742
bcf_hrec_destroy
[function]
[call site]
04743
__assert_fail
[call site]
04744
__errno_location
[call site]
04745
strerror
[call site]
04746
hts_log
[function]
[call site]
04747
strncmp
[call site]
04748
strchr
[call site]
04749
hts_strprint
[function]
[call site]
04750
hts_log
[function]
[call site]
04751
hts_log
[function]
[call site]
04752
bcf_hdr_parse_sample_line
[function]
[call site]
04753
strlen
[call site]
04754
strncmp
[call site]
04755
hts_log
[function]
[call site]
04756
strlen
[call site]
04757
strncmp
[call site]
04758
hts_log
[function]
[call site]
04759
bcf_hdr_add_sample_len
[function]
[call site]
04760
isspace_c
[function]
[call site]
04761
hts_log
[function]
[call site]
04762
kh_put_vdict
[function]
[call site]
04763
hts_log
[function]
[call site]
04764
bcf_hdr_sync
[function]
[call site]
04765
realloc
[call site]
04766
get_hdr_aux
[function]
[call site]
04767
bcf_hdr_check_sanity
[function]
[call site]
04768
bcf_get_version
[function]
[call site]
04769
bcf_hdr_id2int
[function]
[call site]
04770
kh_get_vdict
[function]
[call site]
04771
atoi
[call site]
04772
hts_log
[function]
[call site]
04773
hts_log
[function]
[call site]
04774
bcf_hdr_id2int
[function]
[call site]
04775
atoi
[call site]
04776
hts_log
[function]
[call site]
04777
hts_log
[function]
[call site]
04778
tbx_index_load3
[function]
[call site]
04779
index_load
[function]
[call site]
04780
calloc
[call site]
04781
hts_idx_load3
[function]
[call site]
04782
idx_find_and_load
[function]
[call site]
04783
strstr
[call site]
04784
strdup
[call site]
04785
__errno_location
[call site]
04786
strerror
[call site]
04787
hts_log
[function]
[call site]
04788
hts_idx_load3
[function]
[call site]
04789
hisremote
[function]
[call site]
04790
stat
[call site]
04791
hts_log
[function]
[call site]
04792
idx_test_and_fetch
[function]
[call site]
04793
hisremote
[function]
[call site]
04794
strncmp
[call site]
04795
strcspn
[call site]
04796
kputsn
[function]
[call site]
04797
access
[call site]
04798
hopen
[function]
[call site]
04799
hts_log
[function]
[call site]
04800
hts_detect_format2
[function]
[call site]
04801
hts_log
[function]
[call site]
04802
hts_log
[function]
[call site]
04803
hts_open_tmpfile
[function]
[call site]
04804
hts_log
[function]
[call site]
04805
hts_log
[function]
[call site]
04806
calloc
[call site]
04807
__errno_location
[call site]
04808
strerror
[call site]
04809
hts_log
[function]
[call site]
04810
hread
[function]
[call site]
04811
hwrite
[function]
[call site]
04812
__errno_location
[call site]
04813
strerror
[call site]
04814
hts_log
[function]
[call site]
04815
hts_log
[function]
[call site]
04816
hclose
[function]
[call site]
04817
__errno_location
[call site]
04818
strerror
[call site]
04819
hts_log
[function]
[call site]
04820
rename
[call site]
04821
__errno_location
[call site]
04822
strerror
[call site]
04823
hts_log
[function]
[call site]
04824
ks_clear
[function]
[call site]
04825
hclose
[function]
[call site]
04826
hts_log
[function]
[call site]
04827
hopen
[function]
[call site]
04828
hclose_abruptly
[function]
[call site]
04829
strlen
[call site]
04830
__errno_location
[call site]
04831
hclose_abruptly
[function]
[call site]
04832
hclose_abruptly
[function]
[call site]
04833
unlink
[call site]
04834
__errno_location
[call site]
04835
strdup
[call site]
04836
idx_read
[function]
[call site]
04837
bgzf_open
[function]
[call site]
04838
ed_is_big
[function]
[call site]
04839
bgzf_read
[function]
[call site]
04840
memcmp
[call site]
04841
bgzf_read
[function]
[call site]
04842
ed_swap_4p
[function]
[call site]
04843
bgzf_read
[function]
[call site]
04844
bgzf_read
[function]
[call site]
04845
ed_swap_4p
[function]
[call site]
04846
hts_idx_init
[function]
[call site]
04847
idx_read_core
[function]
[call site]
04851
ed_is_big
[function]
[call site]
04852
kh_init_bin
[function]
[call site]
04853
bgzf_read
[function]
[call site]
04854
ed_swap_4p
[function]
[call site]
04855
bgzf_read
[function]
[call site]
04856
ed_swap_4p
[function]
[call site]
04857
kh_put_bin
[function]
[call site]
04858
bgzf_read
[function]
[call site]
04859
ed_swap_8p
[function]
[call site]
04860
bgzf_read
[function]
[call site]
04861
ed_swap_4p
[function]
[call site]
04862
bgzf_read
[function]
[call site]
04863
swap_bins
[function]
[call site]
04864
ed_swap_8p
[function]
[call site]
04865
ed_swap_8p
[function]
[call site]
04866
bgzf_read
[function]
[call site]
04867
ed_swap_4p
[function]
[call site]
04868
bgzf_read
[function]
[call site]
04869
ed_swap_8p
[function]
[call site]
04870
update_loff
[function]
[call site]
04871
hts_bin_bot
[function]
[call site]
04872
hts_bin_level
[function]
[call site]
04873
bgzf_read
[function]
[call site]
04874
ed_swap_8p
[function]
[call site]
04875
memcmp
[call site]
04876
bgzf_read
[function]
[call site]
04877
le_to_u32
[function]
[call site]
04878
hts_idx_init
[function]
[call site]
04879
le_to_u32
[function]
[call site]
04880
bgzf_read
[function]
[call site]
04881
idx_read_core
[function]
[call site]
04882
memcmp
[call site]
04883
bgzf_read
[function]
[call site]
04884
ed_swap_4p
[function]
[call site]
04885
hts_idx_init
[function]
[call site]
04886
idx_read_core
[function]
[call site]
04887
__errno_location
[call site]
04888
bgzf_close
[function]
[call site]
04889
bgzf_close
[function]
[call site]
04890
hts_idx_destroy
[function]
[call site]
04891
__errno_location
[call site]
04892
strerror
[call site]
04893
hts_log
[function]
[call site]
04894
hts_idx_check_local
[function]
[call site]
04895
hisremote
[function]
[call site]
04896
strlen
[call site]
04897
strncmp
[call site]
04898
strncmp
[call site]
04899
hts_log
[function]
[call site]
04900
strlen
[call site]
04901
calloc
[call site]
04902
strcpy
[call site]
04903
stat
[call site]
04904
strcpy
[call site]
04905
stat
[call site]
04906
strcpy
[call site]
04907
stat
[call site]
04908
strcpy
[call site]
04909
stat
[call site]
04910
strcpy
[call site]
04911
stat
[call site]
04912
strcpy
[call site]
04913
stat
[call site]
04914
strcpy
[call site]
04915
stat
[call site]
04916
strcpy
[call site]
04917
stat
[call site]
04918
strcpy
[call site]
04919
strcmp
[call site]
04920
strcmp
[call site]
04921
strcpy
[call site]
04922
stat
[call site]
04923
strcpy
[call site]
04924
stat
[call site]
04925
hisremote
[function]
[call site]
04926
idx_filename
[function]
[call site]
04927
haddextension
[function]
[call site]
04928
find_scheme_handler
[function]
[call site]
04929
strncmp
[call site]
04930
strcspn
[call site]
04931
strchr
[call site]
04932
strip_extension
[function]
[call site]
04933
kputsn
[function]
[call site]
04934
kputs
[function]
[call site]
04935
kputs
[function]
[call site]
04936
idx_test_and_fetch
[function]
[call site]
04937
haddextension
[function]
[call site]
04938
idx_test_and_fetch
[function]
[call site]
04939
idx_filename
[function]
[call site]
04940
idx_filename
[function]
[call site]
04941
idx_filename
[function]
[call site]
04942
idx_filename
[function]
[call site]
04943
idx_filename
[function]
[call site]
04944
hts_log
[function]
[call site]
04945
hts_idx_load3
[function]
[call site]
04946
idx_read
[function]
[call site]
04947
hts_idx_get_meta
[function]
[call site]
04948
le_to_i32
[function]
[call site]
04949
le_to_i32
[function]
[call site]
04950
le_to_i32
[function]
[call site]
04951
le_to_i32
[function]
[call site]
04952
le_to_i32
[function]
[call site]
04953
le_to_i32
[function]
[call site]
04954
le_to_u32
[function]
[call site]
04955
get_tid
[function]
[call site]
04956
kh_init_s2i
[function]
[call site]
04957
kh_put_s2i
[function]
[call site]
04958
strdup
[call site]
04959
kh_del_s2i
[function]
[call site]
04960
kh_get_s2i
[function]
[call site]
04961
__errno_location
[call site]
04962
strerror
[call site]
04963
hts_log
[function]
[call site]
04964
strlen
[call site]
04965
hts_log
[function]
[call site]
04966
tbx_destroy
[function]
[call site]
04967
hts_idx_destroy
[function]
[call site]
04968
kh_destroy_s2i
[function]
[call site]
04969
tbx_seqnames
[function]
[call site]
04970
calloc
[call site]
04971
calloc
[call site]
04972
__assert_fail
[call site]
04973
__assert_fail
[call site]
04974
bcf_hdr_get_hrec
[function]
[call site]
04975
add_missing_contig_hrec
[function]
[call site]
04976
calloc
[call site]
04977
strdup
[call site]
04978
bcf_hrec_add_key
[function]
[call site]
04979
strlen
[call site]
04980
bcf_hrec_set_val
[function]
[call site]
04981
bcf_hdr_add_hrec
[function]
[call site]
04982
__errno_location
[call site]
04983
__errno_location
[call site]
04984
strerror
[call site]
04985
hts_log
[function]
[call site]
04986
bcf_hrec_destroy
[function]
[call site]
04987
__errno_location
[call site]
04988
bcf_hdr_sync
[function]
[call site]
04989
tbx_destroy
[function]
[call site]
04990
tbx_destroy
[function]
[call site]
04991
bcf_hdr_destroy
[function]
[call site]
04992
get_hdr_aux
[function]
[call site]
04993
kh_destroy_hdict
[function]
[call site]
04994
kh_destroy_vdict
[function]
[call site]
04995
bcf_hrec_destroy
[function]
[call site]
04996
hts_log
[function]
[call site]
04997
__assert_fail
[call site]
04998
bcf_hdr_init
[function]
[call site]
04999
hts_log
[function]
[call site]
05000
bgzf_read
[function]
[call site]
05001
hts_log
[function]
[call site]
05002
bcf_hdr_destroy
[function]
[call site]
05003
strncmp
[call site]
05004
strncmp
[call site]
05005
hts_log
[function]
[call site]
05006
hts_log
[function]
[call site]
05007
bcf_hdr_destroy
[function]
[call site]
05008
bgzf_read
[function]
[call site]
05009
__errno_location
[call site]
05010
__errno_location
[call site]
05011
bgzf_read
[function]
[call site]
05012
bcf_hdr_parse
[function]
[call site]
05013
bcf_hdr_incr_ref
[function]
[call site]
05014
get_hdr_aux
[function]
[call site]
05015
bgzf_set_private_data
[function]
[call site]
05016
__assert_fail
[call site]
05017
hdr_bgzf_private_data_cleanup
[function]
[call site]
05018
bcf_hdr_decr_ref
[function]
[call site]
05019
get_hdr_aux
[function]
[call site]
05020
bcf_hdr_destroy
[function]
[call site]
05021
hts_log
[function]
[call site]
05022
bcf_hdr_destroy
[function]
[call site]
05023
hts_close_or_abort
[function]
[call site]
05024
hts_close
[function]
[call site]
05025
bcf_hdr_write
[function]
[call site]
05026
__errno_location
[call site]
05027
bcf_hdr_sync
[function]
[call site]
05028
vcf_hdr_write
[function]
[call site]
05029
bcf_hdr_format
[function]
[call site]
05030
_bcf_hrec_format
[function]
[call site]
05031
ksprintf
[function]
[call site]
05032
strcmp
[call site]
05033
kputc
[function]
[call site]
05034
ksprintf
[function]
[call site]
05035
ksprintf
[function]
[call site]
05036
ksprintf
[function]
[call site]
05037
ksprintf
[function]
[call site]
05038
ksprintf
[function]
[call site]
05039
ksprintf
[function]
[call site]
05040
ksprintf
[function]
[call site]
05041
bgzf_write
[function]
[call site]
05042
bgzf_flush
[function]
[call site]
05043
hwrite
[function]
[call site]
05044
bcf_hdr_format
[function]
[call site]
05045
kputc
[function]
[call site]
05046
bgzf_write
[function]
[call site]
05047
u32_to_le
[function]
[call site]
05048
bgzf_write
[function]
[call site]
05049
bgzf_write
[function]
[call site]
05050
bgzf_flush
[function]
[call site]
05051
bcf_hdr_incr_ref
[function]
[call site]
05052
bgzf_set_private_data
[function]
[call site]
05053
hdr_bgzf_private_data_cleanup
[function]
[call site]
05054
bcf_init
[function]
[call site]
05055
calloc
[call site]
05056
bcf_read
[function]
[call site]
05057
vcf_read
[function]
[call site]
05058
hts_getline
[function]
[call site]
05059
vcf_parse
[function]
[call site]
05060
ks_resize
[function]
[call site]
05061
bcf_clear
[function]
[call site]
05062
bcf_float_set
[function]
[call site]
05063
kstrtok
[function]
[call site]
05064
kh_get_vdict
[function]
[call site]
05065
hts_log
[function]
[call site]
05066
fix_chromosome
[function]
[call site]
05067
ksprintf
[function]
[call site]
05068
bcf_hdr_parse_line
[function]
[call site]
05069
bcf_hdr_add_hrec
[function]
[call site]
05070
bcf_hrec_destroy
[function]
[call site]
05071
bcf_hdr_sync
[function]
[call site]
05072
kh_get_vdict
[function]
[call site]
05073
hts_log
[function]
[call site]
05074
kstrtok
[function]
[call site]
05075
hts_str2uint
[function]
[call site]
05076
hts_log
[function]
[call site]
05077
hts_log
[function]
[call site]
05078
kstrtok
[function]
[call site]
05079
memcmp
[call site]
05080
bcf_enc_vchar
[function]
[call site]
05081
bcf_enc_size
[function]
[call site]
05082
ks_resize
[function]
[call site]
05083
ks_resize
[function]
[call site]
05084
i16_to_le
[function]
[call site]
05085
i32_to_le
[function]
[call site]
05086
kputsn
[function]
[call site]
05087
bcf_enc_size
[function]
[call site]
05088
kstrtok
[function]
[call site]
05089
bcf_enc_vchar
[function]
[call site]
05090
kstrtok
[function]
[call site]
05091
memcmp
[call site]
05092
bcf_seqname_safe
[function]
[call site]
05093
bcf_seqname
[function]
[call site]
05094
bcf_hdr_id2name
[function]
[call site]
05095
hts_log
[function]
[call site]
05096
bcf_enc_vchar
[function]
[call site]
05097
kstrtok
[function]
[call site]
05098
memcmp
[call site]
05099
atof
[call site]
05100
bcf_float_set
[function]
[call site]
05101
kstrtok
[function]
[call site]
05102
memcmp
[call site]
05103
vcf_parse_filter
[function]
[call site]
05104
bcf_seqname_safe
[function]
[call site]
05105
hts_log
[function]
[call site]
05106
kstrtok
[function]
[call site]
05107
kh_get_vdict
[function]
[call site]
05108
hts_log
[function]
[call site]
05109
ksprintf
[function]
[call site]
05110
bcf_hdr_parse_line
[function]
[call site]
05111
bcf_hdr_add_hrec
[function]
[call site]
05112
bcf_hrec_destroy
[function]
[call site]
05113
bcf_hdr_sync
[function]
[call site]
05114
kh_get_vdict
[function]
[call site]
05115
bcf_seqname_safe
[function]
[call site]
05116
hts_log
[function]
[call site]
05117
bcf_enc_vint
[function]
[call site]
05118
bcf_enc_size
[function]
[call site]
05119
bcf_enc_int1
[function]
[call site]
05120
ks_resize
[function]
[call site]
05121
i16_to_le
[function]
[call site]
05122
i32_to_le
[function]
[call site]
05123
bcf_enc_size
[function]
[call site]
05124
ks_resize
[function]
[call site]
05125
bcf_enc_size
[function]
[call site]
05126
ks_resize
[function]
[call site]
05127
i16_to_le
[function]
[call site]
05128
bcf_enc_size
[function]
[call site]
05129
ks_resize
[function]
[call site]
05130
i32_to_le
[function]
[call site]
05131
bcf_enc_vint
[function]
[call site]
05132
kstrtok
[function]
[call site]
05133
memcmp
[call site]
05134
vcf_parse_info
[function]
[call site]
05135
bcf_seqname_safe
[function]
[call site]
05136
hts_log
[function]
[call site]
05137
kh_get_vdict
[function]
[call site]
05138
hts_log
[function]
[call site]
05139
ksprintf
[function]
[call site]
05140
bcf_hdr_parse_line
[function]
[call site]
05141
bcf_hdr_add_hrec
[function]
[call site]
05142
bcf_hrec_destroy
[function]
[call site]
05143
bcf_hdr_sync
[function]
[call site]
05144
kh_get_vdict
[function]
[call site]
05145
bcf_seqname_safe
[function]
[call site]
05146
hts_log
[function]
[call site]
05147
bcf_enc_int1
[function]
[call site]
05148
bcf_enc_size
[function]
[call site]
05149
bcf_enc_vchar
[function]
[call site]
05150
realloc
[call site]
05151
bcf_seqname_safe
[function]
[call site]
05152
hts_log
[function]
[call site]
05153
hts_str2int
[function]
[call site]
05154
bcf_seqname_safe
[function]
[call site]
05155
hts_log
[function]
[call site]
05156
bcf_enc_int1
[function]
[call site]
05157
bcf_enc_vint
[function]
[call site]
05158
memcmp
[call site]
05159
bcf_seqname_safe
[function]
[call site]
05160
hts_log
[function]
[call site]
05161
hts_str2dbl
[function]
[call site]
05162
bcf_float_set
[function]
[call site]
05163
bcf_enc_vfloat
[function]
[call site]
05164
__assert_fail
[call site]
05165
bcf_enc_size
[function]
[call site]
05166
serialize_float_array
[function]
[call site]
05167
ks_resize
[function]
[call site]
05168
float_to_le
[function]
[call site]
05169
kstrtok
[function]
[call site]
05170
vcf_parse_format
[function]
[call site]
05171
vcf_parse_format_empty1
[function]
[call site]
05172
bcf_seqname_safe
[function]
[call site]
05173
hts_log
[function]
[call site]
05174
vcf_parse_format_dict2
[function]
[call site]
05175
kstrtok
[function]
[call site]
05176
bcf_seqname_safe
[function]
[call site]
05177
hts_log
[function]
[call site]
05178
kh_get_vdict
[function]
[call site]
05179
bcf_seqname_safe
[function]
[call site]
05180
hts_log
[function]
[call site]
05181
bcf_seqname_safe
[function]
[call site]
05182
hts_log
[function]
[call site]
05183
ksprintf
[function]
[call site]
05184
bcf_hdr_parse_line
[function]
[call site]
05185
bcf_hdr_add_hrec
[function]
[call site]
05186
bcf_hrec_destroy
[function]
[call site]
05187
bcf_hdr_sync
[function]
[call site]
05188
kh_get_vdict
[function]
[call site]
05189
bcf_seqname_safe
[function]
[call site]
05190
hts_log
[function]
[call site]
05191
vcf_parse_format_max3
[function]
[call site]
05192
hts_log
[function]
[call site]
05193
vcf_parse_format_alloc4
[function]
[call site]
05194
bcf_seqname_safe
[function]
[call site]
05195
hts_log
[function]
[call site]
05196
align_mem
[function]
[call site]
05197
kputsn
[function]
[call site]
05198
bcf_seqname_safe
[function]
[call site]
05199
hts_log
[function]
[call site]
05200
bcf_seqname_safe
[function]
[call site]
05201
hts_log
[function]
[call site]
05202
ks_resize
[function]
[call site]
05203
bcf_seqname_safe
[function]
[call site]
05204
hts_log
[function]
[call site]
05205
bcf_seqname_safe
[function]
[call site]
05206
hts_log
[function]
[call site]
05207
vcf_parse_format_fill5
[function]
[call site]
05208
bcf_get_version
[function]
[call site]
05209
bcf_seqname_safe
[function]
[call site]
05210
hts_log
[function]
[call site]
05211
hts_str2uint
[function]
[call site]
05212
bcf_seqname_safe
[function]
[call site]
05213
hts_log
[function]
[call site]
05214
bcf_seqname_safe
[function]
[call site]
05215
hts_log
[function]
[call site]
05216
hts_str2int
[function]
[call site]
05217
bcf_seqname_safe
[function]
[call site]
05218
hts_log
[function]
[call site]
05219
isdigit_c
[function]
[call site]
05220
bcf_float_set
[function]
[call site]
05221
hts_str2dbl
[function]
[call site]
05222
bcf_seqname
[function]
[call site]
05223
hts_log
[function]
[call site]
05224
bcf_float_set
[function]
[call site]
05225
bcf_float_set
[function]
[call site]
05226
bcf_seqname_safe
[function]
[call site]
05227
hts_log
[function]
[call site]
05228
hts_strprint
[function]
[call site]
05229
bcf_seqname_safe
[function]
[call site]
05230
hts_log
[function]
[call site]
05231
bcf_float_set
[function]
[call site]
05232
bcf_float_set
[function]
[call site]
05233
vcf_parse_format_gt6
[function]
[call site]
05234
bcf_enc_int1
[function]
[call site]
05235
bcf_enc_size
[function]
[call site]
05236
kputsn
[function]
[call site]
05237
bcf_enc_vint
[function]
[call site]
05238
bcf_enc_size
[function]
[call site]
05239
serialize_float_array
[function]
[call site]
05240
bcf_seqname_safe
[function]
[call site]
05241
hts_log
[function]
[call site]
05242
vcf_parse_format_check7
[function]
[call site]
05243
bcf_seqname_safe
[function]
[call site]
05244
hts_log
[function]
[call site]
05245
bcf_seqname_safe
[function]
[call site]
05246
hts_log
[function]
[call site]
05247
get_rlen
[function]
[call site]
05248
bcf_hdr_id2int
[function]
[call site]
05249
svlen_on_ref_for_vcf_alt
[function]
[call site]
05250
strlen
[call site]
05251
memcmp
[call site]
05252
memcmp
[call site]
05253
memcmp
[call site]
05254
memcmp
[call site]
05255
strcmp
[call site]
05256
strcmp
[call site]
05257
strlen
[call site]
05258
bcf_dec_size
[function]
[call site]
05259
bcf_dec_typed_int1
[function]
[call site]
05260
bcf_dec_int1
[function]
[call site]
05261
le_to_i8
[function]
[call site]
05262
le_to_i16
[function]
[call site]
05263
le_to_i32
[function]
[call site]
05264
le_to_i64
[function]
[call site]
05265
le_to_u64
[function]
[call site]
05266
bcf_dec_size
[function]
[call site]
05267
svlen_on_ref_for_vcf_alt
[function]
[call site]
05268
strncmp
[call site]
05269
strncmp
[call site]
05270
bcf_dec_size
[function]
[call site]
05271
bcf_hdr_id2int
[function]
[call site]
05272
bcf_get_info
[function]
[call site]
05273
bcf_hdr_id2int
[function]
[call site]
05274
bcf_get_info_id
[function]
[call site]
05275
bcf_unpack
[function]
[call site]
05276
bcf_fmt_sized_array
[function]
[call site]
05277
bcf_dec_size
[function]
[call site]
05278
bcf_fmt_array
[function]
[call site]
05279
kputc_
[function]
[call site]
05280
memchr
[call site]
05281
kputsn
[function]
[call site]
05282
kputc
[function]
[call site]
05283
le_to_i8
[function]
[call site]
05284
kputc_
[function]
[call site]
05285
kputc
[function]
[call site]
05286
kputw
[function]
[call site]
05287
le_to_i16
[function]
[call site]
05288
kputc_
[function]
[call site]
05289
kputc
[function]
[call site]
05290
kputw
[function]
[call site]
05291
le_to_i32
[function]
[call site]
05292
kputc_
[function]
[call site]
05293
kputc
[function]
[call site]
05294
kputw
[function]
[call site]
05295
le_to_u32
[function]
[call site]
05296
kputc_
[function]
[call site]
05297
kputc
[function]
[call site]
05298
le_to_float
[function]
[call site]
05299
kputd
[function]
[call site]
05300
hts_log
[function]
[call site]
05301
exit
[call site]
05302
kputc_
[function]
[call site]
05303
hts_realloc_or_die
[function]
[call site]
05304
bcf_fmt_sized_array
[function]
[call site]
05305
kputc_
[function]
[call site]
05306
bcf_dec_size
[function]
[call site]
05307
hts_realloc_or_die
[function]
[call site]
05308
bcf_dec_int1
[function]
[call site]
05309
hts_realloc_or_die
[function]
[call site]
05310
bcf_unpack_info_core1
[function]
[call site]
05311
bcf_dec_typed_int1
[function]
[call site]
05312
bcf_dec_size
[function]
[call site]
05313
le_to_i16
[function]
[call site]
05314
le_to_i32
[function]
[call site]
05315
le_to_float
[function]
[call site]
05316
le_to_i64
[function]
[call site]
05317
hts_realloc_or_die
[function]
[call site]
05318
bcf_unpack_fmt_core1
[function]
[call site]
05319
bcf_dec_typed_int1
[function]
[call site]
05320
bcf_dec_size
[function]
[call site]
05321
bcf_get_info
[function]
[call site]
05322
bcf_dec_typed_int1
[function]
[call site]
05323
bcf_unpack_info_core1
[function]
[call site]
05324
bcf_unpack_info_core1
[function]
[call site]
05325
bcf_dec_size
[function]
[call site]
05326
bcf_hdr_id2int
[function]
[call site]
05327
bcf_get_fmt
[function]
[call site]
05328
bcf_hdr_id2int
[function]
[call site]
05329
bcf_get_fmt_id
[function]
[call site]
05330
bcf_unpack
[function]
[call site]
05331
bcf_dec_typed_int1
[function]
[call site]
05332
bcf_unpack_fmt_core1
[function]
[call site]
05333
bcf_dec_size
[function]
[call site]
05334
le_to_i8
[function]
[call site]
05335
le_to_i16
[function]
[call site]
05336
le_to_i32
[function]
[call site]
05337
le_to_i64
[function]
[call site]
05338
le_to_i8
[function]
[call site]
05339
le_to_i16
[function]
[call site]
05340
le_to_i32
[function]
[call site]
05341
le_to_i64
[function]
[call site]
05342
bgzf_get_private_data
[function]
[call site]
05343
__assert_fail
[call site]
05344
bcf_read1_core
[function]
[call site]
05345
bgzf_read
[function]
[call site]
05346
bcf_clear
[function]
[call site]
05347
le_to_u32
[function]
[call site]
05348
le_to_u32
[function]
[call site]
05349
ks_resize
[function]
[call site]
05350
ks_resize
[function]
[call site]
05351
le_to_i32
[function]
[call site]
05352
le_to_u32
[function]
[call site]
05353
le_to_i32
[function]
[call site]
05354
le_to_float
[function]
[call site]
05355
le_to_u16
[function]
[call site]
05356
le_to_u16
[function]
[call site]
05357
le_to_u32
[function]
[call site]
05358
bgzf_read
[function]
[call site]
05359
bgzf_read
[function]
[call site]
05360
bcf_record_check
[function]
[call site]
05361
bcf_get_version
[function]
[call site]
05362
bcf_hdr_id2int
[function]
[call site]
05363
hts_log
[function]
[call site]
05364
bcf_dec_size_safe
[function]
[call site]
05365
bcf_dec_typed_int1_safe
[function]
[call site]
05366
le_to_i16
[function]
[call site]
05367
le_to_i32
[function]
[call site]
05368
bcf_seqname_safe
[function]
[call site]
05369
get_type_name
[function]
[call site]
05370
hts_log
[function]
[call site]
05371
bcf_seqname_safe
[function]
[call site]
05372
hts_log
[function]
[call site]
05373
bcf_dec_size_safe
[function]
[call site]
05374
bcf_seqname_safe
[function]
[call site]
05375
get_type_name
[function]
[call site]
05376
bcf_dec_size_safe
[function]
[call site]
05377
bcf_seqname_safe
[function]
[call site]
05378
get_type_name
[function]
[call site]
05379
bcf_dec_int1
[function]
[call site]
05380
bcf_seqname_safe
[function]
[call site]
05381
hts_log
[function]
[call site]
05382
bcf_dec_typed_int1_safe
[function]
[call site]
05383
bcf_seqname_safe
[function]
[call site]
05384
hts_log
[function]
[call site]
05385
bcf_dec_size_safe
[function]
[call site]
05386
bcf_seqname_safe
[function]
[call site]
05387
get_type_name
[function]
[call site]
05388
hts_log
[function]
[call site]
05389
bcf_dec_typed_int1_safe
[function]
[call site]
05390
bcf_record_check_err
[function]
[call site]
05391
bcf_seqname_safe
[function]
[call site]
05392
bcf_dec_size_safe
[function]
[call site]
05393
bcf_record_check_err
[function]
[call site]
05394
updatephasing
[function]
[call site]
05395
bcf_seqname_safe
[function]
[call site]
05396
hts_log
[function]
[call site]
05397
get_rlen
[function]
[call site]
05398
bcf_seqname_safe
[function]
[call site]
05399
hts_log
[function]
[call site]
05400
bcf_seqname_safe
[function]
[call site]
05401
hts_log
[function]
[call site]
05402
bcf_subset_format
[function]
[call site]
05403
hts_realloc_or_die
[function]
[call site]
05404
bcf_unpack_fmt_core1
[function]
[call site]
05405
bcf_write
[function]
[call site]
05406
bcf_hdr_sync
[function]
[call site]
05407
bcf_seqname_safe
[function]
[call site]
05408
hts_log
[function]
[call site]
05409
vcf_write
[function]
[call site]
05410
vcf_format
[function]
[call site]
05411
bcf_seqname
[function]
[call site]
05412
hts_log
[function]
[call site]
05413
__errno_location
[call site]
05414
bcf_unpack
[function]
[call site]
05415
get_hdr_aux
[function]
[call site]
05416
calloc
[call site]
05417
kputs
[function]
[call site]
05418
kputll
[function]
[call site]
05419
kputc_
[function]
[call site]
05420
kputs
[function]
[call site]
05421
kputc_
[function]
[call site]
05422
kputs
[function]
[call site]
05423
kputc_
[function]
[call site]
05424
kputs
[function]
[call site]
05425
kputc_
[function]
[call site]
05426
kputc_
[function]
[call site]
05427
bcf_float_is_missing
[function]
[call site]
05428
kputd
[function]
[call site]
05429
bcf_seqname_safe
[function]
[call site]
05430
hts_log
[function]
[call site]
05431
__errno_location
[call site]
05432
kputc_
[function]
[call site]
05433
strlen
[call site]
05434
kputsn
[function]
[call site]
05435
kputc_
[function]
[call site]
05436
kputc_
[function]
[call site]
05437
bcf_dec_typed_int1
[function]
[call site]
05438
bcf_dec_size
[function]
[call site]
05439
bcf_seqname_safe
[function]
[call site]
05440
hts_log
[function]
[call site]
05441
__errno_location
[call site]
05442
strlen
[call site]
05443
ks_resize
[function]
[call site]
05444
bcf_fmt_array
[function]
[call site]
05445
bcf_float_is_missing
[function]
[call site]
05446
kputc_
[function]
[call site]
05447
kputd
[function]
[call site]
05448
kputc_
[function]
[call site]
05449
kputc_
[function]
[call site]
05450
kputw
[function]
[call site]
05451
kputc_
[function]
[call site]
05452
kputll
[function]
[call site]
05453
bcf_seqname_safe
[function]
[call site]
05454
hts_log
[function]
[call site]
05455
__errno_location
[call site]
05456
kputc_
[function]
[call site]
05457
kputc_
[function]
[call site]
05458
bcf_dec_typed_int1
[function]
[call site]
05459
bcf_dec_size
[function]
[call site]
05460
kputc_
[function]
[call site]
05461
bcf_seqname_safe
[function]
[call site]
05462
hts_log
[function]
[call site]
05463
__errno_location
[call site]
05464
strlen
[call site]
05465
kputsn
[function]
[call site]
05466
kputsn
[function]
[call site]
05467
kputc_
[function]
[call site]
05468
kputc_
[function]
[call site]
05469
bcf_format_gt_v2
[function]
[call site]
05470
le_to_i8
[function]
[call site]
05471
kputc
[function]
[call site]
05472
kputw
[function]
[call site]
05473
le_to_i16
[function]
[call site]
05474
kputc
[function]
[call site]
05475
kputw
[function]
[call site]
05476
le_to_i32
[function]
[call site]
05477
kputc
[function]
[call site]
05478
kputw
[function]
[call site]
05479
kputc
[function]
[call site]
05480
hts_log
[function]
[call site]
05481
get_hdr_aux
[function]
[call site]
05482
kinsert_char
[function]
[call site]
05483
ks_resize
[function]
[call site]
05484
kinsert_char
[function]
[call site]
05485
kinsert_char
[function]
[call site]
05486
hts_log
[function]
[call site]
05487
__errno_location
[call site]
05488
bcf_fmt_array1
[function]
[call site]
05489
kputc_
[function]
[call site]
05490
kputc_
[function]
[call site]
05491
kputw
[function]
[call site]
05492
le_to_i16
[function]
[call site]
05493
kputc_
[function]
[call site]
05494
kputw
[function]
[call site]
05495
le_to_i32
[function]
[call site]
05496
kputc_
[function]
[call site]
05497
kputw
[function]
[call site]
05498
le_to_u32
[function]
[call site]
05499
kputc_
[function]
[call site]
05500
le_to_float
[function]
[call site]
05501
kputd
[function]
[call site]
05502
hts_log
[function]
[call site]
05503
bcf_fmt_array
[function]
[call site]
05504
kputc_
[function]
[call site]
05505
bcf_fmt_array1
[function]
[call site]
05506
bcf_fmt_array
[function]
[call site]
05507
kputc_
[function]
[call site]
05508
kputsn
[function]
[call site]
05509
kputc
[function]
[call site]
05510
bgzf_flush_try
[function]
[call site]
05511
hts_idx_amend_last
[function]
[call site]
05512
bgzf_write
[function]
[call site]
05513
hwrite
[function]
[call site]
05514
bcf_seqname_safe
[function]
[call site]
05515
hts_idx_tbi_name
[function]
[call site]
05516
strlen
[call site]
05517
realloc
[call site]
05518
strcpy
[call site]
05519
le_to_u32
[function]
[call site]
05520
u32_to_le
[function]
[call site]
05521
bgzf_idx_push
[function]
[call site]
05522
bcf_strerror
[function]
[call site]
05523
add_desc_to_buffer
[function]
[call site]
05524
add_desc_to_buffer
[function]
[call site]
05528
bcf_seqname_safe
[function]
[call site]
05529
bcf1_sync
[function]
[call site]
05530
bcf1_sync_id
[function]
[call site]
05531
strcmp
[call site]
05532
strlen
[call site]
05533
bcf_enc_vchar
[function]
[call site]
05534
bcf_enc_size
[function]
[call site]
05535
bcf1_sync_alleles
[function]
[call site]
05536
bcf1_sync_filter
[function]
[call site]
05540
bcf_enc_vint
[function]
[call site]
05541
bcf_enc_vint
[function]
[call site]
05542
bcf1_sync_info
[function]
[call site]
05543
kputsn_
[function]
[call site]
05544
bcf_unpack
[function]
[call site]
05545
bcf1_sync_id
[function]
[call site]
05546
kputsn_
[function]
[call site]
05547
bcf1_sync_alleles
[function]
[call site]
05548
kputsn_
[function]
[call site]
05549
strlen
[call site]
05550
bcf1_sync_filter
[function]
[call site]
05551
kputsn_
[function]
[call site]
05552
bcf_enc_vint
[function]
[call site]
05553
bcf1_sync_info
[function]
[call site]
05554
kputsn_
[function]
[call site]
05555
kputsn_
[function]
[call site]
05556
bcf_seqname_safe
[function]
[call site]
05557
hts_log
[function]
[call site]
05558
u32_to_le
[function]
[call site]
05559
u32_to_le
[function]
[call site]
05560
i32_to_le
[function]
[call site]
05561
u32_to_le
[function]
[call site]
05562
u32_to_le
[function]
[call site]
05563
float_to_le
[function]
[call site]
05564
u16_to_le
[function]
[call site]
05565
u16_to_le
[function]
[call site]
05566
u32_to_le
[function]
[call site]
05567
bgzf_write
[function]
[call site]
05568
bgzf_write
[function]
[call site]
05569
bgzf_write
[function]
[call site]
05570
bgzf_idx_push
[function]
[call site]
05571
bcf_destroy
[function]
[call site]
05572
bcf_empty
[function]
[call site]
05573
bcf_clear
[function]
[call site]
05574
bcf_hdr_destroy
[function]
[call site]
05575
hts_close_or_abort
[function]
[call site]
05576
hts_close
[function]
[call site]
05577
view_vcf
[function]
[call site]
05578