The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 234 | 4075 | hts_str2dbl | call site: 04075 | bam_sym_lookup |
| 142 | 1563 | hts_hopen | call site: 01563 | hts_process_opts |
| 110 | 4786 | idx_find_and_load | call site: 04786 | hts_idx_load3 |
| 103 | 1323 | bgzf_read_block | call site: 01323 | bgzf_index_dump |
| 102 | 3038 | ks_free | call site: 03038 | cram_get_ref |
| 79 | 2557 | zlib_mem_deflate | call site: 02557 | fqz_compress |
| 76 | 3942 | sam_parse1 | call site: 03942 | sam_dispatcher_read |
| 69 | 1492 | refs2id | call site: 01492 | hts_tpool_init |
| 67 | 2710 | rans_compress_to_4x16 | call site: 02710 | arith_compress_to |
| 64 | 4928 | idx_find_and_load | call site: 04928 | hts_idx_load3 |
| 63 | 1805 | sam_format1_append | call site: 01805 | hts_set_opt |
| 52 | 4488 | sam_write1 | call site: 04488 | fastq_format1 |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
realloc
[call site]
00024
__ac_FNV1a_hash_string
[function]
[call site]
00025
strcmp
[call site]
00026
__errno_location
[call site]
00027
strerror
[call site]
00028
hts_log
[function]
[call site]
00029
priority
[function]
[call site]
00030
hfile_add_scheme_handler
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
init_add_plugin
[function]
[call site]
00033
hts_log
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hfile_plugin_init_mem
[function]
[call site]
00037
hfile_add_scheme_handler
[function]
[call site]
00038
init_add_plugin
[function]
[call site]
00039
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00040
hfile_add_scheme_handler
[function]
[call site]
00041
init_add_plugin
[function]
[call site]
00042
hfile_plugin_init_libcurl
[function]
[call site]
00043
hts_version
[function]
[call site]
00044
curl_global_init
[call site]
00045
easy_errno
[function]
[call site]
00046
curl_easy_getinfo
[call site]
00047
curl_easy_getinfo
[call site]
00048
http_status_errno
[function]
[call site]
00049
curl_easy_strerror
[call site]
00050
hts_log
[function]
[call site]
00051
__errno_location
[call site]
00052
curl_share_init
[call site]
00053
curl_global_cleanup
[call site]
00054
__errno_location
[call site]
00055
curl_share_setopt
[call site]
00056
share_lock
[function]
[call site]
00057
pthread_mutex_lock
[call site]
00058
curl_share_setopt
[call site]
00059
share_unlock
[function]
[call site]
00060
pthread_mutex_unlock
[call site]
00061
curl_share_setopt
[call site]
00062
curl_share_cleanup
[call site]
00063
curl_global_cleanup
[call site]
00064
__errno_location
[call site]
00065
getenv
[call site]
00066
strdup
[call site]
00067
kh_init_auth_map
[function]
[call site]
00068
calloc
[call site]
00069
__errno_location
[call site]
00070
kh_destroy_auth_map
[function]
[call site]
00071
curl_share_cleanup
[call site]
00072
curl_global_cleanup
[call site]
00073
__errno_location
[call site]
00074
getenv
[call site]
00075
strcmp
[call site]
00076
getenv
[call site]
00077
atoi
[call site]
00078
getenv
[call site]
00079
atol
[call site]
00080
getenv
[call site]
00081
atol
[call site]
00082
getenv
[call site]
00083
atol
[call site]
00084
getenv
[call site]
00085
atol
[call site]
00086
curl_version_info
[call site]
00087
ksprintf
[function]
[call site]
00088
kvsprintf
[function]
[call site]
00089
kputd
[function]
[call site]
00090
kputsn
[function]
[call site]
00091
__errno_location
[call site]
00092
ks_resize
[function]
[call site]
00093
realloc
[call site]
00094
kputsn
[function]
[call site]
00095
kputc
[function]
[call site]
00096
ks_resize
[function]
[call site]
00097
ks_resize
[function]
[call site]
00098
snprintf
[call site]
00099
kputsn
[function]
[call site]
00100
vsnprintf
[call site]
00101
ks_resize
[function]
[call site]
00102
vsnprintf
[call site]
00103
hfile_add_scheme_handler
[function]
[call site]
00104
init_add_plugin
[function]
[call site]
00105
hfile_plugin_init_gcs
[function]
[call site]
00106
hfile_add_scheme_handler
[function]
[call site]
00107
hfile_add_scheme_handler
[function]
[call site]
00108
hfile_add_scheme_handler
[function]
[call site]
00109
init_add_plugin
[function]
[call site]
00110
hfile_plugin_init_s3
[function]
[call site]
00111
hts_version
[function]
[call site]
00112
curl_global_init
[call site]
00113
curl_share_init
[call site]
00114
curl_global_cleanup
[call site]
00115
__errno_location
[call site]
00116
curl_share_setopt
[call site]
00117
share_lock
[function]
[call site]
00118
pthread_mutex_lock
[call site]
00119
curl_share_setopt
[call site]
00120
share_unlock
[function]
[call site]
00121
pthread_mutex_unlock
[call site]
00122
curl_share_setopt
[call site]
00123
curl_share_cleanup
[call site]
00124
curl_global_cleanup
[call site]
00125
__errno_location
[call site]
00126
curl_version_info
[call site]
00127
ksprintf
[function]
[call site]
00128
hfile_add_scheme_handler
[function]
[call site]
00129
hfile_add_scheme_handler
[function]
[call site]
00130
hfile_add_scheme_handler
[function]
[call site]
00131
atexit
[call site]
00132
hfile_exit
[function]
[call site]
00133
hfile_shutdown
[function]
[call site]
00134
pthread_mutex_lock
[call site]
00135
kh_destroy_scheme_string
[function]
[call site]
00136
pthread_mutex_unlock
[call site]
00137
pthread_mutex_destroy
[call site]
00138
pthread_mutex_unlock
[call site]
00139
pthread_mutex_unlock
[call site]
00140
kh_get_scheme_string
[function]
[call site]
00141
strchr
[call site]
00142
strcmp
[call site]
00143
hopen_fd_stdinout
[function]
[call site]
00144
strchr
[call site]
00145
snprintf
[call site]
00146
hdopen
[function]
[call site]
00147
blksize
[function]
[call site]
00148
fstat
[call site]
00149
hfile_init
[function]
[call site]
00150
strchr
[call site]
00151
posix_memalign
[call site]
00152
strchr
[call site]
00153
hfile_destroy
[function]
[call site]
00154
__errno_location
[call site]
00155
__errno_location
[call site]
00156
strchr
[call site]
00157
strchr
[call site]
00158
hopen_fd
[function]
[call site]
00159
hfile_oflags
[function]
[call site]
00160
open
[call site]
00161
blksize
[function]
[call site]
00162
hfile_init
[function]
[call site]
00163
__errno_location
[call site]
00164
close
[call site]
00165
hfile_destroy
[function]
[call site]
00166
hts_hopen
[function]
[call site]
00167
calloc
[call site]
00168
strdup
[call site]
00169
ed_is_big
[function]
[call site]
00170
strchr
[call site]
00171
strncpy
[call site]
00172
strncpy
[call site]
00173
strchr
[call site]
00174
hts_detect_format2
[function]
[call site]
00175
hpeek
[function]
[call site]
00176
refill_buffer
[function]
[call site]
00177
__errno_location
[call site]
00178
memcmp
[call site]
00179
memcmp
[call site]
00180
decompress_peek_gz
[function]
[call site]
00181
hpeek
[function]
[call site]
00182
inflateInit2_
[call site]
00183
inflate
[call site]
00184
inflateReset
[call site]
00185
inflateEnd
[call site]
00186
memcmp
[call site]
00187
memcmp
[call site]
00188
memcmp
[call site]
00189
memcmp
[call site]
00190
decompress_peek_xz
[function]
[call site]
00191
hpeek
[function]
[call site]
00192
lzma_easy_decoder_memusage
[call site]
00193
lzma_stream_decoder
[call site]
00194
lzma_code
[call site]
00195
lzma_end
[call site]
00196
lzma_end
[call site]
00197
memcmp
[call site]
00198
hpeek
[function]
[call site]
00199
strcmp
[call site]
00200
find_file_extension
[function]
[call site]
00201
strstr
[call site]
00202
strlen
[call site]
00203
tolower_c
[function]
[call site]
00204
memcmp
[call site]
00205
memcmp
[call site]
00206
memcmp
[call site]
00207
memcmp
[call site]
00208
memcmp
[call site]
00209
memcmp
[call site]
00210
memcmp
[call site]
00211
strcmp
[call site]
00212
memcmp
[call site]
00213
parse_version
[function]
[call site]
00214
isdigit_c
[function]
[call site]
00215
__ctype_b_loc
[call site]
00216
isdigit_c
[function]
[call site]
00217
memcmp
[call site]
00218
memcmp
[call site]
00219
memcmp
[call site]
00220
memcmp
[call site]
00221
parse_version
[function]
[call site]
00222
memcmp
[call site]
00223
cmp_nonblank
[function]
[call site]
00224
isspace_c
[function]
[call site]
00225
__ctype_b_loc
[call site]
00226
memcmp
[call site]
00227
is_fastaq
[function]
[call site]
00228
is_fastaq
[function]
[call site]
00232
parse_tabbed_text
[function]
[call site]
00233
isdigit_c
[function]
[call site]
00234
strchr
[call site]
00235
isdigit_c
[function]
[call site]
00236
colmatch
[function]
[call site]
00237
colmatch
[function]
[call site]
00238
strstr
[call site]
00239
colmatch
[function]
[call site]
00240
strstr
[call site]
00241
colmatch
[function]
[call site]
00242
colmatch
[function]
[call site]
00243
is_text_only
[function]
[call site]
00244
__errno_location
[call site]
00245
hopen_htsget_redirect
[function]
[call site]
00246
hfile_init
[function]
[call site]
00247
parse_ga4gh_redirect_json
[function]
[call site]
00248
hts_json_fnext
[function]
[call site]
00249
hgetc
[function]
[call site]
00250
hgetc2
[function]
[call site]
00251
refill_buffer
[function]
[call site]
00252
fscan_string
[function]
[call site]
00253
hgetc
[function]
[call site]
00254
hgetc
[function]
[call site]
00255
kputc
[function]
[call site]
00256
kputc
[function]
[call site]
00257
kputc
[function]
[call site]
00258
kputc
[function]
[call site]
00259
kputc
[function]
[call site]
00260
kputc
[function]
[call site]
00261
hgetc
[function]
[call site]
00262
dehex
[function]
[call site]
00263
hgetc
[function]
[call site]
00264
dehex
[function]
[call site]
00265
hgetc
[function]
[call site]
00266
dehex
[function]
[call site]
00267
hgetc
[function]
[call site]
00268
dehex
[function]
[call site]
00269
encode_utf8
[function]
[call site]
00270
kputsn
[function]
[call site]
00271
kputc
[function]
[call site]
00272
kputsn
[function]
[call site]
00273
kputc
[function]
[call site]
00274
hpeek
[function]
[call site]
00275
strchr
[call site]
00276
hgetc
[function]
[call site]
00277
kputc
[function]
[call site]
00278
token_type
[function]
[call site]
00279
hts_json_fnext
[function]
[call site]
00283
strcmp
[call site]
00284
parse_ga4gh_body_json
[function]
[call site]
00285
hts_json_fnext
[function]
[call site]
00286
hts_json_fnext
[function]
[call site]
00287
strcmp
[call site]
00288
hts_json_fnext
[function]
[call site]
00289
hts_json_fnext
[function]
[call site]
00290
hts_realloc_or_die
[function]
[call site]
00291
__errno_location
[call site]
00292
realloc
[call site]
00293
__errno_location
[call site]
00294
strerror
[call site]
00295
hts_log
[function]
[call site]
00296
exit
[call site]
00297
hts_json_fnext
[function]
[call site]
00298
strcmp
[call site]
00299
hts_json_fnext
[function]
[call site]
00300
ks_release
[function]
[call site]
00301
strcmp
[call site]
00302
hts_json_fnext
[function]
[call site]
00303
hts_json_fnext
[function]
[call site]
00304
hts_json_fnext
[function]
[call site]
00305
kputs
[function]
[call site]
00306
__errno_location
[call site]
00307
strlen
[call site]
00308
kputsn
[function]
[call site]
00309
kputs
[function]
[call site]
00310
hts_realloc_or_die
[function]
[call site]
00311
ks_release
[function]
[call site]
00312
hts_json_fskip_value
[function]
[call site]
00313
skip_value
[function]
[call site]
00314
fnext
[function]
[call site]
00315
hts_json_fnext
[function]
[call site]
00316
strcmp
[call site]
00317
hts_json_fnext
[function]
[call site]
00318
hts_log
[function]
[call site]
00319
hts_json_fskip_value
[function]
[call site]
00320
hts_json_fnext
[function]
[call site]
00321
free_all_parts
[function]
[call site]
00322
free_part
[function]
[call site]
00323
hfile_destroy
[function]
[call site]
00324
__errno_location
[call site]
00325
hclose_abruptly
[function]
[call site]
00326
__errno_location
[call site]
00327
hfile_destroy
[function]
[call site]
00328
__errno_location
[call site]
00329
hts_crypt4gh_redirect
[function]
[call site]
00330
strlen
[call site]
00331
snprintf
[call site]
00332
strchr
[call site]
00333
snprintf
[call site]
00334
hopen
[function]
[call site]
00335
hts_detect_format2
[function]
[call site]
00336
strchr
[call site]
00337
strchr
[call site]
00338
strchr
[call site]
00339
strchr
[call site]
00340
strchr
[call site]
00341
strchr
[call site]
00342
strchr
[call site]
00343
strchr
[call site]
00344
abort
[call site]
00345
format_category
[function]
[call site]
00346
__errno_location
[call site]
00347
bgzf_hopen
[function]
[call site]
00348
strchr
[call site]
00349
bgzf_read_init
[function]
[call site]
00350
hpeek
[function]
[call site]
00351
calloc
[call site]
00352
memcmp
[call site]
00353
memcmp
[call site]
00354
hts_log
[function]
[call site]
00355
razf_info
[function]
[call site]
00356
strcmp
[call site]
00357
hseek
[function]
[call site]
00358
writebuffer_is_nonempty
[function]
[call site]
00359
flush_buffer
[function]
[call site]
00360
__errno_location
[call site]
00361
htell
[function]
[call site]
00362
__errno_location
[call site]
00363
__errno_location
[call site]
00364
__errno_location
[call site]
00365
hread
[function]
[call site]
00366
hread2
[function]
[call site]
00367
__errno_location
[call site]
00368
refill_buffer
[function]
[call site]
00369
ed_is_big
[function]
[call site]
00370
ed_swap_8p
[function]
[call site]
00371
ed_swap_8
[function]
[call site]
00372
hts_log
[function]
[call site]
00373
hts_log
[function]
[call site]
00374
__errno_location
[call site]
00375
kh_init_bgzf_cache
[function]
[call site]
00376
calloc
[call site]
00377
strchr
[call site]
00378
bgzf_write_init
[function]
[call site]
00379
calloc
[call site]
00380
mode2level
[function]
[call site]
00381
strchr
[call site]
00382
strchr
[call site]
00383
calloc
[call site]
00384
deflateInit2_
[call site]
00385
bgzf_zerr
[function]
[call site]
00386
hts_log
[function]
[call site]
00390
__errno_location
[call site]
00391
strerror
[call site]
00392
hts_log
[function]
[call site]
00393
__errno_location
[call site]
00394
ed_is_big
[function]
[call site]
00395
cram_dopen
[function]
[call site]
00396
calloc
[call site]
00397
cram_read_file_def
[function]
[call site]
00398
hread
[function]
[call site]
00399
memcmp
[call site]
00400
hts_log
[function]
[call site]
00401
cram_init_tables
[function]
[call site]
00402
cram_init_varint
[function]
[call site]
00403
cram_read_SAM_hdr
[function]
[call site]
00404
int32_decode
[function]
[call site]
00405
hread
[function]
[call site]
00406
hread
[function]
[call site]
00407
cram_read_container
[function]
[call site]
00408
int32_decode
[function]
[call site]
00409
crc32
[call site]
00410
calloc
[call site]
00411
__errno_location
[call site]
00412
cram_free_container
[function]
[call site]
00413
cram_free_compression_header
[function]
[call site]
00414
kh_destroy_map
[function]
[call site]
00415
cram_free_block
[function]
[call site]
00416
kh_destroy_m_s2i
[function]
[call site]
00417
string_pool_destroy
[function]
[call site]
00418
cram_free_block
[function]
[call site]
00419
cram_free_slice
[function]
[call site]
00420
cram_free_block
[function]
[call site]
00421
cram_free_block
[function]
[call site]
00422
cram_free_block
[function]
[call site]
00423
cram_free_slice_header
[function]
[call site]
00424
cram_free_block
[function]
[call site]
00425
cram_free_block
[function]
[call site]
00426
cram_free_block
[function]
[call site]
00427
cram_free_block
[function]
[call site]
00428
cram_free_block
[function]
[call site]
00429
cram_free_block
[function]
[call site]
00430
string_pool_destroy
[function]
[call site]
00431
kh_destroy_m_s2i
[function]
[call site]
00432
kh_destroy_m_s2i
[function]
[call site]
00433
cram_free_slice
[function]
[call site]
00434
cram_stats_free
[function]
[call site]
00435
kh_destroy_m_i2i
[function]
[call site]
00436
cram_free_block
[function]
[call site]
00437
cram_free_block
[function]
[call site]
00438
kh_destroy_m_tagmap
[function]
[call site]
00439
free_bam_list
[function]
[call site]
00440
bam_destroy1
[function]
[call site]
00441
bam_get_mempolicy
[function]
[call site]
00442
bam_get_mempolicy
[function]
[call site]
00443
bam_get_mempolicy
[function]
[call site]
00444
__errno_location
[call site]
00445
cram_free_container
[function]
[call site]
00446
cram_free_container
[function]
[call site]
00447
int32_decode
[function]
[call site]
00448
cram_free_container
[function]
[call site]
00449
hts_log
[function]
[call site]
00450
cram_free_container
[function]
[call site]
00451
cram_free_container
[function]
[call site]
00452
cram_read_block
[function]
[call site]
00453
hgetc
[function]
[call site]
00454
hts_log
[function]
[call site]
00455
crc32
[call site]
00456
hgetc
[function]
[call site]
00457
crc32
[call site]
00458
hread
[function]
[call site]
00459
hread
[function]
[call site]
00460
int32_decode
[function]
[call site]
00461
cram_free_container
[function]
[call site]
00462
cram_uncompress_block
[function]
[call site]
00463
crc32
[call site]
00464
hts_log
[function]
[call site]
00465
__assert_fail
[call site]
00466
zlib_mem_inflate
[function]
[call site]
00467
inflateInit2_
[call site]
00468
hts_log
[function]
[call site]
00469
inflate
[call site]
00470
hts_log
[function]
[call site]
00471
inflateEnd
[call site]
00472
realloc
[call site]
00473
inflateEnd
[call site]
00474
inflateEnd
[call site]
00475
BZ2_bzBuffToBuffDecompress
[call site]
00476
lzma_mem_inflate
[function]
[call site]
00477
lzma_easy_decoder_memusage
[call site]
00478
lzma_stream_decoder
[call site]
00479
realloc
[call site]
00480
lzma_code
[call site]
00481
hts_log
[function]
[call site]
00482
lzma_code
[call site]
00483
hts_log
[function]
[call site]
00484
realloc
[call site]
00485
lzma_end
[call site]
00486
lzma_end
[call site]
00487
rans_uncompress
[function]
[call site]
00488
rans_uncompress_O1
[function]
[call site]
00489
htscodecs_tls_calloc
[function]
[call site]
00490
htscodecs_tls_alloc
[function]
[call site]
00491
pthread_once
[call site]
00492
htscodecs_tls_init
[function]
[call site]
00493
pthread_key_create
[call site]
00494
htscodecs_tls_free_all
[function]
[call site]
00495
fprintf
[call site]
00496
strerror
[call site]
00497
fprintf
[call site]
00498
pthread_getspecific
[call site]
00499
calloc
[call site]
00500
pthread_setspecific
[call site]
00501
fprintf
[call site]
00502
calloc
[call site]
00503
RansDecSymbolInit32
[function]
[call site]
00504
__assert_fail
[call site]
00505
__assert_fail
[call site]
00506
RansDecInit
[function]
[call site]
00507
RansDecInit
[function]
[call site]
00508
RansDecInit
[function]
[call site]
00509
RansDecInit
[function]
[call site]
00510
RansDecAdvanceStep
[function]
[call site]
00511
RansDecAdvanceStep
[function]
[call site]
00512
RansDecAdvanceStep
[function]
[call site]
00513
RansDecAdvanceStep
[function]
[call site]
00514
RansDecRenorm2
[function]
[call site]
00515
RansDecRenorm2
[function]
[call site]
00516
RansDecRenormSafe
[function]
[call site]
00517
RansDecRenormSafe
[function]
[call site]
00518
RansDecRenormSafe
[function]
[call site]
00519
RansDecRenormSafe
[function]
[call site]
00520
RansDecGet
[function]
[call site]
00521
RansDecRenormSafe
[function]
[call site]
00522
htscodecs_tls_free
[function]
[call site]
00523
rans_uncompress_O0
[function]
[call site]
00527
RansDecInit
[function]
[call site]
00528
RansDecInit
[function]
[call site]
00529
RansDecInit
[function]
[call site]
00530
RansDecInit
[function]
[call site]
00531
RansDecRenorm2
[function]
[call site]
00532
RansDecRenorm2
[function]
[call site]
00533
RansDecRenormSafe
[function]
[call site]
00534
RansDecRenormSafe
[function]
[call site]
00535
RansDecRenormSafe
[function]
[call site]
00536
RansDecRenormSafe
[function]
[call site]
00537
fqz_decompress
[function]
[call site]
00538
uncompress_block_fqz2f
[function]
[call site]
00539
var_get_u32
[function]
[call site]
00540
fqz_read_parameters
[function]
[call site]
00541
read_array
[function]
[call site]
00542
fqz_read_parameters1
[function]
[call site]
00543
read_array
[function]
[call site]
00544
read_array
[function]
[call site]
00545
read_array
[function]
[call site]
00546
fqz_free_parameters
[function]
[call site]
00547
fqz_create_models
[function]
[call site]
00548
htscodecs_tls_alloc
[function]
[call site]
00549
SIMPLE_MODEL256_init
[function]
[call site]
00550
SIMPLE_MODEL256_init
[function]
[call site]
00551
SIMPLE_MODEL2_init
[function]
[call site]
00552
SIMPLE_MODEL2_init
[function]
[call site]
00553
SIMPLE_MODEL256_init
[function]
[call site]
00554
RC_SetInput
[function]
[call site]
00555
RC_StartDecode
[function]
[call site]
00556
realloc
[call site]
00557
realloc
[call site]
00558
decompress_new_read
[function]
[call site]
00559
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00560
RC_GetFreq
[function]
[call site]
00561
RC_Decode
[function]
[call site]
00562
SIMPLE_MODEL256_normalize
[function]
[call site]
00563
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00564
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00565
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00566
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00567
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00568
SIMPLE_MODEL2_normalize
[function]
[call site]
00569
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00570
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00571
fqz_update_ctx
[function]
[call site]
00572
realloc
[call site]
00573
realloc
[call site]
00574
RC_FinishDecode
[function]
[call site]
00575
fqz_destroy_models
[function]
[call site]
00576
htscodecs_tls_free
[function]
[call site]
00577
fqz_free_parameters
[function]
[call site]
00578
fqz_destroy_models
[function]
[call site]
00579
fqz_free_parameters
[function]
[call site]
00580
rans_uncompress_4x16
[function]
[call site]
00581
rans_uncompress_to_4x16
[function]
[call site]
00582
var_get_u32
[function]
[call site]
00583
var_get_u32
[function]
[call site]
00584
rans_uncompress_to_4x16
[function]
[call site]
00585
unstripe
[function]
[call site]
00586
var_get_u32
[function]
[call site]
00587
hts_unpack_meta
[function]
[call site]
00588
var_get_u32
[function]
[call site]
00589
var_get_u32
[function]
[call site]
00590
var_get_u32
[function]
[call site]
00591
var_get_u32
[function]
[call site]
00592
rans_dec_func
[function]
[call site]
00593
pthread_once
[call site]
00594
htscodecs_tls_cpu_init
[function]
[call site]
00595
__get_cpuid_max
[function]
[call site]
00596
not_ancient_darwin
[function]
[call site]
00597
strerror
[call site]
00598
fprintf
[call site]
00599
fprintf
[call site]
00600
rans_dec_func
[function]
[call site]
00601
hts_rle_decode
[function]
[call site]
00602
var_get_u32
[function]
[call site]
00603
hts_unpack
[function]
[call site]
00604
arith_uncompress_to
[function]
[call site]
00605
var_get_u32
[function]
[call site]
00606
var_get_u32
[function]
[call site]
00607
arith_uncompress_to
[function]
[call site]
00608
unstripe
[function]
[call site]
00609
var_get_u32
[function]
[call site]
00610
hts_unpack_meta
[function]
[call site]
00611
var_get_u32
[function]
[call site]
00612
BZ2_bzBuffToBuffDecompress
[call site]
00613
arith_uncompress_O1_RLE
[function]
[call site]
00614
htscodecs_tls_alloc
[function]
[call site]
00615
SIMPLE_MODEL256_init
[function]
[call site]
00616
htscodecs_tls_alloc
[function]
[call site]
00617
htscodecs_tls_free
[function]
[call site]
00618
SIMPLE_MODEL258_init
[function]
[call site]
00619
RC_SetInput
[function]
[call site]
00620
RC_StartDecode
[function]
[call site]
00621
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00622
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00623
SIMPLE_MODEL258_normalize
[function]
[call site]
00624
RC_FinishDecode
[function]
[call site]
00625
htscodecs_tls_free
[function]
[call site]
00626
htscodecs_tls_free
[function]
[call site]
00627
htscodecs_tls_free
[function]
[call site]
00628
htscodecs_tls_free
[function]
[call site]
00629
arith_uncompress_O0_RLE
[function]
[call site]
00630
SIMPLE_MODEL256_init
[function]
[call site]
00631
htscodecs_tls_alloc
[function]
[call site]
00632
SIMPLE_MODEL258_init
[function]
[call site]
00633
RC_SetInput
[function]
[call site]
00634
RC_StartDecode
[function]
[call site]
00635
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00636
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00637
RC_FinishDecode
[function]
[call site]
00638
htscodecs_tls_free
[function]
[call site]
00639
htscodecs_tls_free
[function]
[call site]
00640
arith_uncompress_O1
[function]
[call site]
00641
htscodecs_tls_alloc
[function]
[call site]
00642
SIMPLE_MODEL256_init
[function]
[call site]
00643
RC_SetInput
[function]
[call site]
00644
RC_StartDecode
[function]
[call site]
00645
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00646
RC_FinishDecode
[function]
[call site]
00647
htscodecs_tls_free
[function]
[call site]
00648
htscodecs_tls_free
[function]
[call site]
00649
arith_uncompress_O0
[function]
[call site]
00650
SIMPLE_MODEL256_init
[function]
[call site]
00651
RC_SetInput
[function]
[call site]
00652
RC_StartDecode
[function]
[call site]
00653
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00654
RC_FinishDecode
[function]
[call site]
00655
hts_unpack
[function]
[call site]
00656
tok3_decode_names
[function]
[call site]
00657
create_context
[function]
[call site]
00658
fprintf
[call site]
00659
htscodecs_tls_alloc
[function]
[call site]
00660
uncompressed_size
[function]
[call site]
00661
var_get_u32
[function]
[call site]
00662
var_get_u32
[function]
[call site]
00663
uncompress
[function]
[call site]
00664
var_get_u32
[function]
[call site]
00665
arith_decode
[function]
[call site]
00666
var_get_u32
[function]
[call site]
00667
arith_uncompress_to
[function]
[call site]
00668
rans_decode
[function]
[call site]
00669
var_get_u32
[function]
[call site]
00670
rans_uncompress_to_4x16
[function]
[call site]
00671
decode_name
[function]
[call site]
00672
decode_token_type
[function]
[call site]
00673
decode_token_int
[function]
[call site]
00674
strlen
[call site]
00675
strcpy
[call site]
00676
strlen
[call site]
00677
decode_token_type
[function]
[call site]
00678
decode_token_char
[function]
[call site]
00679
decode_token_alpha
[function]
[call site]
00680
decode_token_int1
[function]
[call site]
00681
decode_token_int
[function]
[call site]
00682
append_uint32_fixed
[function]
[call site]
00683
decode_token_int1
[function]
[call site]
00684
append_uint32_fixed
[function]
[call site]
00685
decode_token_int
[function]
[call site]
00686
append_uint32_var
[function]
[call site]
00687
decode_token_int1
[function]
[call site]
00688
append_uint32_var
[function]
[call site]
00689
append_uint32_var
[function]
[call site]
00690
append_uint32_fixed
[function]
[call site]
00691
realloc
[call site]
00692
free_context
[function]
[call site]
00693
pool_destroy
[function]
[call site]
00694
htscodecs_tls_free
[function]
[call site]
00695
free_context
[function]
[call site]
00696
cram_free_container
[function]
[call site]
00697
cram_free_block
[function]
[call site]
00698
int32_get_blk
[function]
[call site]
00699
cram_free_container
[function]
[call site]
00700
cram_free_block
[function]
[call site]
00701
cram_free_container
[function]
[call site]
00702
cram_free_block
[function]
[call site]
00703
cram_free_block
[function]
[call site]
00704
cram_read_block
[function]
[call site]
00705
cram_free_container
[function]
[call site]
00706
cram_free_block
[function]
[call site]
00707
cram_free_container
[function]
[call site]
00708
hread
[function]
[call site]
00709
cram_free_container
[function]
[call site]
00710
cram_free_container
[function]
[call site]
00711
sam_hdr_init
[function]
[call site]
00712
calloc
[call site]
00713
sam_hdr_add_lines
[function]
[call site]
00714
sam_hdr_fill_hrecs
[function]
[call site]
00715
sam_hrecs_new
[function]
[call site]
00716
calloc
[call site]
00717
kh_init_sam_hrecs_t
[function]
[call site]
00718
calloc
[call site]
00719
kh_init_m_s2i
[function]
[call site]
00720
calloc
[call site]
00721
kh_init_m_s2i
[function]
[call site]
00722
kh_init_m_s2i
[function]
[call site]
00723
pool_create
[function]
[call site]
00724
next_power_2
[function]
[call site]
00725
pool_create
[function]
[call site]
00726
string_pool_create
[function]
[call site]
00727
sam_hrecs_init_type_order
[function]
[call site]
00728
calloc
[call site]
00729
kh_destroy_sam_hrecs_t
[function]
[call site]
00730
pool_destroy
[function]
[call site]
00731
pool_destroy
[function]
[call site]
00732
string_pool_destroy
[function]
[call site]
00733
sam_hrecs_refs_from_targets_array
[function]
[call site]
00734
hts_log
[function]
[call site]
00735
realloc
[call site]
00736
kh_grow_to_fit_m_s2i
[function]
[call site]
00737
kh_resize_m_s2i
[function]
[call site]
00738
__ac_FNV1a_hash_string
[function]
[call site]
00739
string_dup
[function]
[call site]
00740
strlen
[call site]
00741
string_ndup
[function]
[call site]
00742
string_alloc
[function]
[call site]
00743
new_string_pool
[function]
[call site]
00744
realloc
[call site]
00745
kh_get_s2i
[function]
[call site]
00746
__ac_FNV1a_hash_string
[function]
[call site]
00747
strcmp
[call site]
00748
kh_put_m_s2i
[function]
[call site]
00749
strcmp
[call site]
00750
hts_log
[function]
[call site]
00751
__errno_location
[call site]
00752
strerror
[call site]
00753
hts_log
[function]
[call site]
00754
kh_get_m_s2i
[function]
[call site]
00755
kh_del_m_s2i
[function]
[call site]
00756
sam_hrecs_free
[function]
[call site]
00757
kh_destroy_sam_hrecs_t
[function]
[call site]
00758
kh_destroy_m_s2i
[function]
[call site]
00759
kh_destroy_m_s2i
[function]
[call site]
00760
kh_destroy_m_s2i
[function]
[call site]
00761
pool_destroy
[function]
[call site]
00762
pool_destroy
[function]
[call site]
00763
string_pool_destroy
[function]
[call site]
00764
sam_hrecs_parse_lines
[function]
[call site]
00765
strlen
[call site]
00766
sam_hrecs_error
[function]
[call site]
00767
hts_log
[function]
[call site]
00768
sam_hrecs_parse_single_line
[function]
[call site]
00769
sam_hrecs_error
[function]
[call site]
00770
isalpha_c
[function]
[call site]
00771
__ctype_b_loc
[call site]
00772
sam_hrecs_error
[function]
[call site]
00773
TYPEKEY
[function]
[call site]
00774
pool_alloc
[function]
[call site]
00775
new_pool
[function]
[call site]
00776
realloc
[call site]
00777
kh_put_sam_hrecs_t
[function]
[call site]
00778
kh_resize_sam_hrecs_t
[function]
[call site]
00779
realloc
[call site]
00780
TYPEKEY
[function]
[call site]
00781
parse_comment_line
[function]
[call site]
00782
sam_hrecs_error
[function]
[call site]
00783
warn_if_known_stderr
[function]
[call site]
00784
kmemmem
[function]
[call site]
00785
boyer_moore
[function]
[call site]
00786
memchr
[call site]
00787
ksBM_prep
[function]
[call site]
00788
calloc
[call site]
00789
calloc
[call site]
00790
karp_rabin
[function]
[call site]
00791
fast_exp
[function]
[call site]
00792
memcmp
[call site]
00793
known_stderr
[function]
[call site]
00794
hts_log
[function]
[call site]
00795
hts_log
[function]
[call site]
00796
kmemmem
[function]
[call site]
00797
known_stderr
[function]
[call site]
00798
kmemmem
[function]
[call site]
00799
known_stderr
[function]
[call site]
00800
pool_alloc
[function]
[call site]
00801
string_ndup
[function]
[call site]
00802
parse_noncomment_line
[function]
[call site]
00803
TYPEKEY
[function]
[call site]
00804
sam_hrecs_error
[function]
[call site]
00805
warn_if_known_stderr
[function]
[call site]
00806
sam_hrecs_error
[function]
[call site]
00807
warn_if_known_stderr
[function]
[call site]
00808
pool_alloc
[function]
[call site]
00809
string_ndup
[function]
[call site]
00810
sam_hrecs_global_list_add
[function]
[call site]
00811
TYPEKEY
[function]
[call site]
00812
__assert_fail
[call site]
00813
sam_hrecs_free_tags
[function]
[call site]
00814
sam_hrecs_free_tags
[function]
[call site]
00815
pool_free
[function]
[call site]
00816
pool_free
[function]
[call site]
00817
TYPEKEY
[function]
[call site]
00818
kh_grow_to_fit_m_s2i
[function]
[call site]
00819
realloc
[call site]
00820
sam_hrecs_update_hashes
[function]
[call site]
00821
TYPEKEY
[function]
[call site]
00822
__assert_fail
[call site]
00823
__assert_fail
[call site]
00824
strtoll
[call site]
00825
__assert_fail
[call site]
00826
hts_log
[function]
[call site]
00827
hts_log
[function]
[call site]
00828
hts_log
[function]
[call site]
00829
kh_get_m_s2i
[function]
[call site]
00830
snprintf
[call site]
00831
sam_hrecs_update
[function]
[call site]
00832
sam_hrecs_vupdate
[function]
[call site]
00833
sam_hrecs_find_key
[function]
[call site]
00834
pool_alloc
[function]
[call site]
00835
strlen
[call site]
00836
string_alloc
[function]
[call site]
00837
snprintf
[call site]
00838
sam_hrecs_add_ref_altnames
[function]
[call site]
00839
kstrtok
[function]
[call site]
00840
strchr
[call site]
00841
strlen
[call site]
00842
string_ndup
[function]
[call site]
00843
kh_put_m_s2i
[function]
[call site]
00844
hts_log
[function]
[call site]
00845
strcmp
[call site]
00846
sam_hrecs_add_ref_altnames
[function]
[call site]
00847
strcmp
[call site]
00848
hts_log
[function]
[call site]
00849
hts_log
[function]
[call site]
00850
realloc
[call site]
00851
kh_put_m_s2i
[function]
[call site]
00852
sam_hrecs_add_ref_altnames
[function]
[call site]
00853
TYPEKEY
[function]
[call site]
00854
sam_hrecs_find_key
[function]
[call site]
00855
hts_log
[function]
[call site]
00856
__assert_fail
[call site]
00857
kh_get_m_s2i
[function]
[call site]
00858
__assert_fail
[call site]
00859
hts_log
[function]
[call site]
00860
realloc
[call site]
00861
kh_put_m_s2i
[function]
[call site]
00862
TYPEKEY
[function]
[call site]
00863
realloc
[call site]
00864
__assert_fail
[call site]
00865
hts_log
[function]
[call site]
00866
kh_get_m_s2i
[function]
[call site]
00867
kh_put_m_s2i
[function]
[call site]
00868
realloc
[call site]
00869
sam_hrecs_free
[function]
[call site]
00870
add_stub_ref_sq_lines
[function]
[call site]
00871
snprintf
[call site]
00872
sam_hrecs_add
[function]
[call site]
00873
sam_hrecs_vadd
[function]
[call site]
00874
TYPEKEY
[function]
[call site]
00875
strncmp
[call site]
00876
sam_hrecs_find_type_id
[function]
[call site]
00877
kh_get_m_s2i
[function]
[call site]
00878
kh_get_m_s2i
[function]
[call site]
00879
kh_get_m_s2i
[function]
[call site]
00880
TYPEKEY
[function]
[call site]
00881
kh_get_sam_hrecs_t
[function]
[call site]
00882
sam_hrecs_vupdate
[function]
[call site]
00883
pool_alloc
[function]
[call site]
00884
kh_put_sam_hrecs_t
[function]
[call site]
00885
__assert_fail
[call site]
00886
sam_hrecs_global_list_add
[function]
[call site]
00887
__assert_fail
[call site]
00888
__assert_fail
[call site]
00889
__assert_fail
[call site]
00890
__assert_fail
[call site]
00891
strncmp
[call site]
00892
pool_alloc
[function]
[call site]
00893
strncmp
[call site]
00894
strlen
[call site]
00895
string_alloc
[function]
[call site]
00896
snprintf
[call site]
00897
strlen
[call site]
00898
string_ndup
[function]
[call site]
00899
strncmp
[call site]
00900
pool_alloc
[function]
[call site]
00901
strncmp
[call site]
00902
strlen
[call site]
00903
string_alloc
[function]
[call site]
00904
snprintf
[call site]
00905
strlen
[call site]
00906
string_ndup
[function]
[call site]
00907
TYPEKEY
[function]
[call site]
00908
sam_hrecs_update_hashes
[function]
[call site]
00909
strncmp
[call site]
00910
hts_log
[function]
[call site]
00911
sam_hrecs_free
[function]
[call site]
00912
rebuild_target_arrays
[function]
[call site]
00913
sam_hdr_update_target_arrays
[function]
[call site]
00914
realloc
[call site]
00915
realloc
[call site]
00916
strcmp
[call site]
00917
strdup
[call site]
00918
kh_get_s2i
[function]
[call site]
00919
kh_del_s2i
[function]
[call site]
00920
kh_init_s2i
[function]
[call site]
00921
calloc
[call site]
00922
kh_put_s2i
[function]
[call site]
00923
kh_resize_s2i
[function]
[call site]
00924
realloc
[call site]
00925
kh_get_s2i
[function]
[call site]
00926
kh_del_s2i
[function]
[call site]
00927
sam_hrecs_parse_lines
[function]
[call site]
00928
rebuild_target_arrays
[function]
[call site]
00929
redact_header_text
[function]
[call site]
00930
__assert_fail
[call site]
00931
sam_hdr_destroy
[function]
[call site]
00932
sam_hrecs_free
[function]
[call site]
00933
kh_destroy_s2i
[function]
[call site]
00934
cram_free_file_def
[function]
[call site]
00935
calloc
[call site]
00936
strncpy
[call site]
00937
cram_init_tables
[function]
[call site]
00938
strrchr
[call site]
00939
strdup
[call site]
00940
refs_create
[function]
[call site]
00941
calloc
[call site]
00942
string_pool_create
[function]
[call site]
00943
kh_init_refs
[function]
[call site]
00944
calloc
[call site]
00945
pthread_mutex_init
[call site]
00946
refs_free
[function]
[call site]
00947
string_pool_destroy
[function]
[call site]
00948
ref_entry_free_seq
[function]
[call site]
00949
mfclose
[function]
[call site]
00950
mfflush
[function]
[call site]
00951
fwrite
[call site]
00952
fflush
[call site]
00953
fseek
[call site]
00954
fwrite
[call site]
00955
fflush
[call site]
00956
ftell
[call site]
00957
fileno
[call site]
00958
ftell
[call site]
00959
ftruncate
[call site]
00960
munmap
[call site]
00961
fclose
[call site]
00962
mfdestroy
[function]
[call site]
00963
kh_destroy_refs
[function]
[call site]
00964
bgzf_close
[function]
[call site]
00965
bgzf_flush
[function]
[call site]
00966
mt_queue
[function]
[call site]
00967
pthread_mutex_lock
[call site]
00968
pool_alloc
[function]
[call site]
00969
pthread_mutex_unlock
[call site]
00970
hts_tpool_dispatch3
[function]
[call site]
00971
pthread_mutex_lock
[call site]
00972
pthread_mutex_unlock
[call site]
00973
__errno_location
[call site]
00974
pthread_mutex_unlock
[call site]
00975
pthread_cond_wait
[call site]
00976
pthread_mutex_unlock
[call site]
00977
wake_next_worker
[function]
[call site]
00978
pthread_mutex_lock
[call site]
00979
__assert_fail
[call site]
00980
__assert_fail
[call site]
00981
pthread_cond_signal
[call site]
00982
pthread_mutex_unlock
[call site]
00983
pthread_mutex_unlock
[call site]
00984
bgzf_encode_level0_func
[function]
[call site]
00985
u16_to_le
[function]
[call site]
00986
u16_to_le
[function]
[call site]
00987
u16_to_le
[function]
[call site]
00988
hts_crc32
[function]
[call site]
00989
crc32
[call site]
00990
u32_to_le
[function]
[call site]
00991
u32_to_le
[function]
[call site]
00992
job_cleanup
[function]
[call site]
00993
pthread_mutex_lock
[call site]
00994
pool_free
[function]
[call site]
00995
pthread_mutex_unlock
[call site]
00996
hts_tpool_dispatch3
[function]
[call site]
00997
bgzf_encode_func
[function]
[call site]
00998
bgzf_compress
[function]
[call site]
00999
u16_to_le
[function]
[call site]
01000
u16_to_le
[function]
[call site]
01001
deflateInit2_
[call site]
01002
bgzf_zerr
[function]
[call site]
01003
hts_log
[function]
[call site]
01004
deflate
[call site]
01005
deflateEnd
[call site]
01006
bgzf_zerr
[function]
[call site]
01007
hts_log
[function]
[call site]
01008
deflateEnd
[call site]
01009
deflateEnd
[call site]
01010
bgzf_zerr
[function]
[call site]
01011
hts_log
[function]
[call site]
01012
packInt16
[function]
[call site]
01013
crc32
[call site]
01014
packInt32
[function]
[call site]
01015
packInt32
[function]
[call site]
01016
job_cleanup
[function]
[call site]
01017
job_cleanup
[function]
[call site]
01018
pthread_mutex_lock
[call site]
01019
pthread_mutex_unlock
[call site]
01020
mt_flush_queue
[function]
[call site]
01021
pthread_mutex_lock
[call site]
01022
hts_tpool_process_is_shutdown
[function]
[call site]
01023
pthread_mutex_lock
[call site]
01024
pthread_mutex_unlock
[call site]
01025
pthread_mutex_unlock
[call site]
01026
hts_usleep
[function]
[call site]
01027
nanosleep
[call site]
01028
pthread_mutex_lock
[call site]
01029
pthread_mutex_unlock
[call site]
01030
hts_tpool_process_flush
[function]
[call site]
01031
pthread_mutex_lock
[call site]
01032
pthread_cond_signal
[call site]
01033
pthread_cond_wait
[call site]
01034
gettimeofday
[call site]
01035
pthread_cond_timedwait
[call site]
01036
gettimeofday
[call site]
01037
pthread_cond_timedwait
[call site]
01038
pthread_mutex_unlock
[call site]
01039
pthread_mutex_lock
[call site]
01040
pthread_mutex_unlock
[call site]
01041
hflush
[function]
[call site]
01042
flush_buffer
[function]
[call site]
01043
__errno_location
[call site]
01044
bgzf_index_add_block
[function]
[call site]
01045
realloc
[call site]
01046
deflate_block
[function]
[call site]
01047
bgzf_compress
[function]
[call site]
01048
bgzf_gzip_compress
[function]
[call site]
01049
deflate
[call site]
01050
bgzf_zerr
[function]
[call site]
01051
hts_log
[function]
[call site]
01052
hts_log
[function]
[call site]
01053
hts_log
[function]
[call site]
01054
bgzf_zerr
[function]
[call site]
01055
hts_log
[function]
[call site]
01056
hwrite
[function]
[call site]
01057
hfile_set_blksize
[function]
[call site]
01058
realloc
[call site]
01059
hwrite2
[function]
[call site]
01060
flush_buffer
[function]
[call site]
01061
__errno_location
[call site]
01062
hwrite2
[function]
[call site]
01063
hts_log
[function]
[call site]
01064
bgzf_close_mt
[function]
[call site]
01065
mt_destroy
[function]
[call site]
01066
pthread_mutex_lock
[call site]
01067
pthread_cond_signal
[call site]
01068
hts_tpool_wake_dispatch
[function]
[call site]
01069
pthread_mutex_lock
[call site]
01070
pthread_cond_signal
[call site]
01071
pthread_mutex_unlock
[call site]
01072
pthread_mutex_unlock
[call site]
01073
hts_tpool_process_is_shutdown
[function]
[call site]
01074
hts_tpool_process_destroy
[function]
[call site]
01075
pthread_mutex_lock
[call site]
01076
pthread_mutex_unlock
[call site]
01077
hts_tpool_process_reset
[function]
[call site]
01078
pthread_mutex_lock
[call site]
01079
pthread_mutex_unlock
[call site]
01080
hts_tpool_delete_result
[function]
[call site]
01081
hts_tpool_process_flush
[function]
[call site]
01082
pthread_mutex_lock
[call site]
01083
pthread_cond_signal
[call site]
01084
pthread_mutex_unlock
[call site]
01085
hts_tpool_delete_result
[function]
[call site]
01086
pthread_mutex_lock
[call site]
01087
hts_tpool_process_detach_locked
[function]
[call site]
01088
hts_tpool_process_shutdown_locked
[function]
[call site]
01089
pthread_cond_broadcast
[call site]
01090
pthread_cond_broadcast
[call site]
01091
pthread_cond_broadcast
[call site]
01092
pthread_cond_broadcast
[call site]
01093
pthread_mutex_unlock
[call site]
01094
pthread_cond_destroy
[call site]
01095
pthread_cond_destroy
[call site]
01096
pthread_cond_destroy
[call site]
01097
pthread_cond_destroy
[call site]
01098
pthread_mutex_unlock
[call site]
01099
pthread_join
[call site]
01100
pthread_mutex_destroy
[call site]
01101
pthread_mutex_destroy
[call site]
01102
pthread_mutex_destroy
[call site]
01103
pthread_cond_destroy
[call site]
01104
pool_free
[function]
[call site]
01105
hts_tpool_destroy
[function]
[call site]
01106
pthread_mutex_lock
[call site]
01107
pthread_cond_signal
[call site]
01108
pthread_mutex_unlock
[call site]
01109
pthread_join
[call site]
01110
pthread_mutex_destroy
[call site]
01111
pthread_cond_destroy
[call site]
01112
pool_destroy
[function]
[call site]
01113
fflush
[call site]
01114
deflate_block
[function]
[call site]
01115
bgzf_zerr
[function]
[call site]
01116
hts_log
[function]
[call site]
01117
bgzf_close_mt
[function]
[call site]
01118
hwrite
[function]
[call site]
01119
hflush
[function]
[call site]
01120
hts_log
[function]
[call site]
01121
bgzf_close_mt
[function]
[call site]
01122
inflateEnd
[call site]
01123
deflateEnd
[call site]
01124
bgzf_zerr
[function]
[call site]
01125
hts_log
[function]
[call site]
01126
hclose
[function]
[call site]
01127
writebuffer_is_nonempty
[function]
[call site]
01128
hflush
[function]
[call site]
01129
__errno_location
[call site]
01130
hfile_destroy
[function]
[call site]
01131
__errno_location
[call site]
01132
bgzf_index_destroy
[function]
[call site]
01133
free_cache
[function]
[call site]
01134
kh_destroy_bgzf_cache
[function]
[call site]
01135
bgzf_clear_private_data
[function]
[call site]
01136
__assert_fail
[call site]
01137
pthread_mutex_destroy
[call site]
01138
pthread_mutex_init
[call site]
01139
pthread_mutex_init
[call site]
01140
pthread_mutex_init
[call site]
01141
pthread_mutex_init
[call site]
01142
cram_new_metrics
[function]
[call site]
01143
calloc
[call site]
01144
kh_init_m_metrics
[function]
[call site]
01145
calloc
[call site]
01146
refs_from_header
[function]
[call site]
01147
sam_hdr_fill_hrecs
[function]
[call site]
01148
realloc
[call site]
01149
kh_get_refs
[function]
[call site]
01150
__ac_FNV1a_hash_string
[function]
[call site]
01151
strcmp
[call site]
01152
calloc
[call site]
01153
string_dup
[function]
[call site]
01154
sam_hrecs_find_type_id
[function]
[call site]
01155
sam_hrecs_find_key
[function]
[call site]
01156
string_dup
[function]
[call site]
01157
sam_hrecs_find_key
[function]
[call site]
01158
strtoll
[call site]
01159
kh_put_refs
[function]
[call site]
01160
kh_resize_refs
[function]
[call site]
01161
realloc
[call site]
01162
cram_set_option
[function]
[call site]
01163
cram_set_voption
[function]
[call site]
01164
__errno_location
[call site]
01165
strdup
[call site]
01166
refs_free
[function]
[call site]
01167
cram_seek_to_refpos
[function]
[call site]
01168
cram_index_query
[function]
[call site]
01169
cram_seek
[function]
[call site]
01170
cram_drain_rqueue
[function]
[call site]
01171
hts_tpool_process_empty
[function]
[call site]
01172
pthread_mutex_lock
[call site]
01173
pthread_mutex_unlock
[call site]
01174
hts_tpool_next_result_wait
[function]
[call site]
01175
pthread_mutex_lock
[call site]
01176
hts_tpool_next_result_locked
[function]
[call site]
01177
pthread_cond_signal
[call site]
01178
wake_next_worker
[function]
[call site]
01179
gettimeofday
[call site]
01180
pthread_mutex_unlock
[call site]
01181
hts_tpool_process_destroy
[function]
[call site]
01182
pthread_cond_timedwait
[call site]
01183
pthread_mutex_unlock
[call site]
01184
hts_tpool_result_data
[function]
[call site]
01185
cram_free_container
[function]
[call site]
01186
cram_free_slice
[function]
[call site]
01187
hts_tpool_delete_result
[function]
[call site]
01188
cram_free_container
[function]
[call site]
01189
cram_free_slice
[function]
[call site]
01190
cram_free_container
[function]
[call site]
01191
hseek
[function]
[call site]
01192
pthread_mutex_lock
[call site]
01193
pthread_mutex_unlock
[call site]
01194
cram_free_container
[function]
[call site]
01195
cram_free_container
[function]
[call site]
01196
pthread_mutex_lock
[call site]
01197
pthread_mutex_unlock
[call site]
01198
pthread_mutex_lock
[call site]
01199
pthread_mutex_unlock
[call site]
01200
pthread_mutex_lock
[call site]
01201
pthread_mutex_unlock
[call site]
01202
cram_load_reference
[function]
[call site]
01203
refs_load_fai
[function]
[call site]
01204
strlen
[call site]
01205
refs_create
[function]
[call site]
01206
bgzf_close
[function]
[call site]
01207
strstr
[call site]
01208
string_ndup
[function]
[call site]
01209
snprintf
[call site]
01210
strcmp
[call site]
01211
string_ndup
[function]
[call site]
01212
snprintf
[call site]
01213
string_dup
[function]
[call site]
01214
snprintf
[call site]
01215
bgzf_open_ref
[function]
[call site]
01216
strncmp
[call site]
01217
hisremote
[function]
[call site]
01218
find_scheme_handler
[function]
[call site]
01219
snprintf
[call site]
01220
access
[call site]
01221
fai_build
[function]
[call site]
01222
fai_build3
[function]
[call site]
01223
fai_build3_core
[function]
[call site]
01224
bgzf_open
[function]
[call site]
01225
strchr
[call site]
01226
hopen
[function]
[call site]
01227
bgzf_read_init
[function]
[call site]
01228
hclose_abruptly
[function]
[call site]
01229
strchr
[call site]
01230
hopen
[function]
[call site]
01231
bgzf_write_init
[function]
[call site]
01232
__errno_location
[call site]
01233
ed_is_big
[function]
[call site]
01234
__errno_location
[call site]
01235
strerror
[call site]
01236
hts_log
[function]
[call site]
01237
bgzf_index_build_init
[function]
[call site]
01238
bgzf_index_destroy
[function]
[call site]
01239
calloc
[call site]
01240
hts_log
[function]
[call site]
01241
fai_build_core
[function]
[call site]
01242
calloc
[call site]
01243
kh_init_s
[function]
[call site]
01244
calloc
[call site]
01245
bgzf_getc_
[function]
[call site]
01246
bgzf_getc
[function]
[call site]
01247
bgzf_read_block
[function]
[call site]
01248
hts_tpool_next_result_wait
[function]
[call site]
01249
hts_tpool_result_data
[function]
[call site]
01250
mt_destroy
[function]
[call site]
01251
hts_tpool_delete_result
[function]
[call site]
01252
hts_log
[function]
[call site]
01253
hts_tpool_delete_result
[function]
[call site]
01254
hts_log
[function]
[call site]
01255
hts_tpool_delete_result
[function]
[call site]
01256
bgzf_index_add_block
[function]
[call site]
01257
pthread_mutex_lock
[call site]
01258
pool_free
[function]
[call site]
01259
pthread_mutex_unlock
[call site]
01260
hts_tpool_delete_result
[function]
[call site]
01261
bgzf_htell
[function]
[call site]
01262
pthread_mutex_lock
[call site]
01263
pthread_mutex_unlock
[call site]
01264
htell
[function]
[call site]
01265
hread
[function]
[call site]
01266
__errno_location
[call site]
01267
strerror
[call site]
01268
hts_log
[function]
[call site]
01269
inflate_gzip_block
[function]
[call site]
01270
hread
[function]
[call site]
01271
inflate
[call site]
01272
bgzf_zerr
[function]
[call site]
01273
hts_log
[function]
[call site]
01274
hpeek
[function]
[call site]
01275
inflateReset
[call site]
01276
bgzf_zerr
[function]
[call site]
01277
hts_log
[function]
[call site]
01278
hts_log
[function]
[call site]
01279
hts_log
[function]
[call site]
01280
load_block_from_cache
[function]
[call site]
01281
kh_get_bgzf_cache
[function]
[call site]
01282
hseek
[function]
[call site]
01283
hts_log
[function]
[call site]
01284
exit
[call site]
01285
hread
[function]
[call site]
01286
hts_log
[function]
[call site]
01287
check_header
[function]
[call site]
01288
unpackInt16
[function]
[call site]
01289
unpackInt16
[function]
[call site]
01290
hts_log
[function]
[call site]
01291
hread
[function]
[call site]
01292
calloc
[call site]
01293
inflateInit2_
[call site]
01294
bgzf_zerr
[function]
[call site]
01295
hts_log
[function]
[call site]
01296
inflate_gzip_block
[function]
[call site]
01297
hts_log
[function]
[call site]
01298
unpackInt16
[function]
[call site]
01299
hts_log
[function]
[call site]
01300
hread
[function]
[call site]
01301
hts_log
[function]
[call site]
01302
inflate_block
[function]
[call site]
01303
le_to_u32
[function]
[call site]
01304
bgzf_uncompress
[function]
[call site]
01305
inflateInit2_
[call site]
01306
bgzf_zerr
[function]
[call site]
01307
hts_log
[function]
[call site]
01308
inflate
[call site]
01309
bgzf_zerr
[function]
[call site]
01310
inflateEnd
[call site]
01311
bgzf_zerr
[function]
[call site]
01312
hts_log
[function]
[call site]
01313
inflateEnd
[call site]
01314
bgzf_zerr
[function]
[call site]
01315
hts_log
[function]
[call site]
01316
crc32
[call site]
01317
hts_log
[function]
[call site]
01318
bgzf_zerr
[function]
[call site]
01319
hts_log
[function]
[call site]
01320
bgzf_htell
[function]
[call site]
01321
bgzf_index_add_block
[function]
[call site]
01322
cache_block
[function]
[call site]
01323
kh_del_bgzf_cache
[function]
[call site]
01324
kh_put_bgzf_cache
[function]
[call site]
01325
kh_resize_bgzf_cache
[function]
[call site]
01326
realloc
[call site]
01327
bgzf_htell
[function]
[call site]
01328
hts_log
[function]
[call site]
01329
hts_log
[function]
[call site]
01330
bgzf_getc_
[function]
[call site]
01331
hts_log
[function]
[call site]
01332
__ctype_b_loc
[call site]
01333
hts_log
[function]
[call site]
01334
fai_insert_index
[function]
[call site]
01335
hts_log
[function]
[call site]
01336
strdup
[call site]
01337
kh_put_s
[function]
[call site]
01338
kh_resize_s
[function]
[call site]
01339
realloc
[call site]
01340
__ac_FNV1a_hash_string
[function]
[call site]
01341
strcmp
[call site]
01342
hts_log
[function]
[call site]
01343
realloc
[call site]
01344
hts_log
[function]
[call site]
01345
__ctype_b_loc
[call site]
01346
kputc
[function]
[call site]
01347
bgzf_getc_
[function]
[call site]
01348
kputsn
[function]
[call site]
01349
hts_log
[function]
[call site]
01350
bgzf_getc_
[function]
[call site]
01351
bgzf_utell
[function]
[call site]
01352
bgzf_getc_
[function]
[call site]
01353
bgzf_utell
[function]
[call site]
01354
hts_log
[function]
[call site]
01355
isgraph_
[function]
[call site]
01356
bgzf_getc_
[function]
[call site]
01357
hts_log
[function]
[call site]
01358
bgzf_getc_
[function]
[call site]
01359
bgzf_utell
[function]
[call site]
01360
hts_log
[function]
[call site]
01361
hts_log
[function]
[call site]
01362
isgraph_
[function]
[call site]
01363
bgzf_getc_
[function]
[call site]
01364
hts_log
[function]
[call site]
01365
hts_log
[function]
[call site]
01366
hts_log
[function]
[call site]
01367
fai_insert_index
[function]
[call site]
01368
hts_log
[function]
[call site]
01369
fai_destroy
[function]
[call site]
01370
kh_destroy_s
[function]
[call site]
01371
bgzf_close
[function]
[call site]
01372
hts_log
[function]
[call site]
01373
ksprintf
[function]
[call site]
01374
ksprintf
[function]
[call site]
01375
bgzf_index_dump
[function]
[call site]
01376
hts_log
[function]
[call site]
01377
__errno_location
[call site]
01378
get_name_suffix
[function]
[call site]
01379
strlen
[call site]
01380
snprintf
[call site]
01381
hopen
[function]
[call site]
01382
bgzf_index_dump_hfile
[function]
[call site]
01383
hts_log
[function]
[call site]
01384
__errno_location
[call site]
01385
bgzf_flush
[function]
[call site]
01386
hwrite_uint64
[function]
[call site]
01387
ed_is_big
[function]
[call site]
01388
ed_swap_8
[function]
[call site]
01389
hwrite
[function]
[call site]
01390
hwrite_uint64
[function]
[call site]
01391
hwrite_uint64
[function]
[call site]
01392
__errno_location
[call site]
01393
strerror
[call site]
01394
hts_log
[function]
[call site]
01395
hclose
[function]
[call site]
01396
__errno_location
[call site]
01397
strerror
[call site]
01398
hts_log
[function]
[call site]
01399
hclose_abruptly
[function]
[call site]
01400
hts_log
[function]
[call site]
01401
bgzf_close
[function]
[call site]
01402
__errno_location
[call site]
01403
strerror
[call site]
01404
hts_log
[function]
[call site]
01405
hopen
[function]
[call site]
01406
strerror
[call site]
01407
hts_log
[function]
[call site]
01408
fai_save
[function]
[call site]
01409
kh_get_s
[function]
[call site]
01410
__assert_fail
[call site]
01411
snprintf
[call site]
01412
snprintf
[call site]
01413
hputs
[function]
[call site]
01414
strlen
[call site]
01415
hputs2
[function]
[call site]
01416
hwrite2
[function]
[call site]
01417
hputs
[function]
[call site]
01418
__errno_location
[call site]
01419
strerror
[call site]
01420
hts_log
[function]
[call site]
01421
hclose
[function]
[call site]
01422
__errno_location
[call site]
01423
strerror
[call site]
01424
hts_log
[function]
[call site]
01425
fai_destroy
[function]
[call site]
01426
__errno_location
[call site]
01427
bgzf_close
[function]
[call site]
01428
fai_destroy
[function]
[call site]
01429
__errno_location
[call site]
01430
bgzf_open
[function]
[call site]
01431
perror
[call site]
01432
bgzf_index_load
[function]
[call site]
01433
get_name_suffix
[function]
[call site]
01434
hopen
[function]
[call site]
01435
bgzf_index_load_hfile
[function]
[call site]
01436
calloc
[call site]
01437
hread_uint64
[function]
[call site]
01438
hread
[function]
[call site]
01439
ed_is_big
[function]
[call site]
01440
ed_swap_8p
[function]
[call site]
01441
hread_uint64
[function]
[call site]
01442
hread_uint64
[function]
[call site]
01443
__errno_location
[call site]
01444
strerror
[call site]
01445
hts_log
[function]
[call site]
01446
hclose
[function]
[call site]
01447
__errno_location
[call site]
01448
strerror
[call site]
01449
hts_log
[function]
[call site]
01450
hclose_abruptly
[function]
[call site]
01451
hts_log
[function]
[call site]
01452
bgzf_close
[function]
[call site]
01453
hts_log
[function]
[call site]
01454
hopen
[function]
[call site]
01455
hts_log
[function]
[call site]
01456
perror
[call site]
01457
hgets
[function]
[call site]
01458
__errno_location
[call site]
01459
hgetln
[function]
[call site]
01460
hgetdelim
[function]
[call site]
01461
__errno_location
[call site]
01462
writebuffer_is_nonempty
[function]
[call site]
01463
__errno_location
[call site]
01464
memchr
[call site]
01465
refill_buffer
[function]
[call site]
01466
isspace_c
[function]
[call site]
01467
string_dup
[function]
[call site]
01468
isspace_c
[function]
[call site]
01469
strtoll
[call site]
01470
isspace_c
[function]
[call site]
01471
strtoll
[call site]
01472
isspace_c
[function]
[call site]
01473
strtol
[call site]
01474
isspace_c
[function]
[call site]
01475
strtol
[call site]
01476
kh_put_refs
[function]
[call site]
01477
realloc
[call site]
01478
hclose
[function]
[call site]
01479
hclose_abruptly
[function]
[call site]
01480
refs_free
[function]
[call site]
01481
sanitise_SQ_lines
[function]
[call site]
01482
kh_get_refs
[function]
[call site]
01483
strcmp
[call site]
01484
__assert_fail
[call site]
01485
hts_log
[function]
[call site]
01486
refs_free
[function]
[call site]
01487
refs_create
[function]
[call site]
01488
refs_from_header
[function]
[call site]
01489
refs2id
[function]
[call site]
01490
calloc
[call site]
01491
kh_get_refs
[function]
[call site]
01492
hts_log
[function]
[call site]
01493
__isoc99_sscanf
[call site]
01494
hts_log
[function]
[call site]
01495
hts_log
[function]
[call site]
01496
__errno_location
[call site]
01497
hts_log
[function]
[call site]
01498
cram_init_tables
[function]
[call site]
01499
hts_tpool_init
[function]
[call site]
01500
pthread_mutexattr_init
[call site]
01501
pthread_mutexattr_settype
[call site]
01502
pthread_mutex_init
[call site]
01503
pthread_mutexattr_destroy
[call site]
01504
pthread_mutex_lock
[call site]
01505
pthread_attr_init
[call site]
01506
pthread_attr_getstacksize
[call site]
01507
pthread_attr_setstacksize
[call site]
01508
pthread_cond_init
[call site]
01509
pthread_create
[call site]
01510
tpool_worker
[function]
[call site]
01511
pthread_mutex_lock
[call site]
01512
__assert_fail
[call site]
01513
pthread_cond_wait
[call site]
01514
__assert_fail
[call site]
01515
pthread_cond_broadcast
[call site]
01516
pthread_cond_signal
[call site]
01517
pthread_mutex_unlock
[call site]
01518
hts_tpool_add_result
[function]
[call site]
01519
pthread_mutex_lock
[call site]
01520
pthread_cond_signal
[call site]
01521
pthread_mutex_unlock
[call site]
01522
pthread_mutex_unlock
[call site]
01523
hts_tpool_process_shutdown
[function]
[call site]
01524
pthread_mutex_lock
[call site]
01525
hts_tpool_process_shutdown_locked
[function]
[call site]
01526
pthread_mutex_unlock
[call site]
01527
__assert_fail
[call site]
01528
pthread_cond_broadcast
[call site]
01529
pthread_mutex_unlock
[call site]
01530
pthread_mutex_lock
[call site]
01531
hts_tpool_process_destroy
[function]
[call site]
01532
pthread_mutex_unlock
[call site]
01533
pthread_mutex_lock
[call site]
01534
hts_tpool_process_shutdown_locked
[function]
[call site]
01535
pthread_mutex_unlock
[call site]
01536
pthread_mutex_unlock
[call site]
01537
pthread_attr_destroy
[call site]
01538
__errno_location
[call site]
01539
__errno_location
[call site]
01540
strerror
[call site]
01541
hts_log
[function]
[call site]
01542
pthread_mutex_unlock
[call site]
01543
pthread_join
[call site]
01544
pthread_cond_destroy
[call site]
01545
pthread_mutex_destroy
[call site]
01546
pthread_attr_destroy
[call site]
01547
__errno_location
[call site]
01548
hts_tpool_process_init
[function]
[call site]
01549
pthread_cond_init
[call site]
01550
pthread_cond_init
[call site]
01551
pthread_cond_init
[call site]
01552
pthread_cond_init
[call site]
01553
hts_tpool_process_attach
[function]
[call site]
01554
pthread_mutex_lock
[call site]
01555
__assert_fail
[call site]
01556
pthread_mutex_unlock
[call site]
01557
hts_tpool_size
[function]
[call site]
01558
hts_tpool_process_init
[function]
[call site]
01559
hts_log
[function]
[call site]
01560
__errno_location
[call site]
01561
bgzf_hopen
[function]
[call site]
01562
__errno_location
[call site]
01563
hts_process_opts
[function]
[call site]
01564
hts_parse_opt_list
[function]
[call site]
01565
strncpy
[call site]
01566
hts_opt_add
[function]
[call site]
01567
strdup
[call site]
01568
strchr
[call site]
01569
strcmp
[call site]
01570
strcmp
[call site]
01571
atoi
[call site]
01572
strcmp
[call site]
01573
strcmp
[call site]
01574
atoi
[call site]
01575
strcmp
[call site]
01576
strcmp
[call site]
01577
atoi
[call site]
01578
strcmp
[call site]
01579
strcmp
[call site]
01580
atoi
[call site]
01581
strcmp
[call site]
01582
strcmp
[call site]
01583
atoi
[call site]
01584
strcmp
[call site]
01585
strcmp
[call site]
01586
atoi
[call site]
01587
strcmp
[call site]
01588
strcmp
[call site]
01589
atoi
[call site]
01590
strcmp
[call site]
01591
strcmp
[call site]
01592
atoi
[call site]
01593
strcmp
[call site]
01594
strcmp
[call site]
01595
atoi
[call site]
01596
strcmp
[call site]
01597
strcmp
[call site]
01598
atoi
[call site]
01599
strcmp
[call site]
01600
strcmp
[call site]
01601
atoi
[call site]
01602
strcmp
[call site]
01603
strcmp
[call site]
01604
atoi
[call site]
01605
strcmp
[call site]
01606
strcmp
[call site]
01607
atoi
[call site]
01608
strcmp
[call site]
01609
strcmp
[call site]
01610
atoi
[call site]
01611
strcmp
[call site]
01612
atoi
[call site]
01613
strcmp
[call site]
01614
strcmp
[call site]
01615
strcmp
[call site]
01616
strcmp
[call site]
01617
strcmp
[call site]
01618
strcmp
[call site]
01619
strcmp
[call site]
01620
strcmp
[call site]
01621
strcmp
[call site]
01622
strcmp
[call site]
01623
strcmp
[call site]
01624
strcmp
[call site]
01625
strcmp
[call site]
01626
strcmp
[call site]
01627
atoi
[call site]
01628
strcmp
[call site]
01629
strcmp
[call site]
01630
atoi
[call site]
01631
strcmp
[call site]
01632
strcmp
[call site]
01633
strtol
[call site]
01634
hts_log
[function]
[call site]
01635
strcmp
[call site]
01636
strcmp
[call site]
01637
strtol
[call site]
01638
strcmp
[call site]
01639
strcmp
[call site]
01640
strtol
[call site]
01641
strcmp
[call site]
01642
strcmp
[call site]
01643
strcmp
[call site]
01644
strcmp
[call site]
01645
atoi
[call site]
01646
strcmp
[call site]
01647
strcmp
[call site]
01648
atoi
[call site]
01649
strcmp
[call site]
01650
strcmp
[call site]
01651
strtol
[call site]
01652
strcmp
[call site]
01653
strcmp
[call site]
01654
strtol
[call site]
01655
strcmp
[call site]
01656
strcmp
[call site]
01657
strcmp
[call site]
01658
strcmp
[call site]
01659
strcmp
[call site]
01660
strcmp
[call site]
01661
strcmp
[call site]
01662
strcmp
[call site]
01663
strcmp
[call site]
01664
strcmp
[call site]
01665
strcmp
[call site]
01666
strcmp
[call site]
01667
strcmp
[call site]
01668
strcmp
[call site]
01669
strcmp
[call site]
01670
strcmp
[call site]
01671
hts_log
[function]
[call site]
01672
hts_opt_apply
[function]
[call site]
01673
strdup
[call site]
01674
hts_set_opt
[function]
[call site]
01675
hts_set_threads
[function]
[call site]
01676
sam_set_threads
[function]
[call site]
01677
hts_tpool_init
[function]
[call site]
01678
sam_set_thread_pool
[function]
[call site]
01679
sam_state_create
[function]
[call site]
01680
calloc
[call site]
01681
pthread_mutex_init
[call site]
01682
pthread_mutex_init
[call site]
01683
pthread_cond_init
[call site]
01684
hts_tpool_size
[function]
[call site]
01685
hts_tpool_process_init
[function]
[call site]
01686
sam_state_destroy
[function]
[call site]
01687
pthread_mutex_lock
[call site]
01688
pthread_cond_signal
[call site]
01689
hts_tpool_wake_dispatch
[function]
[call site]
01690
hts_tpool_wake_dispatch
[function]
[call site]
01691
pthread_mutex_unlock
[call site]
01692
hts_usleep
[function]
[call site]
01693
pthread_mutex_lock
[call site]
01694
pthread_mutex_unlock
[call site]
01695
hts_tpool_dispatch
[function]
[call site]
01696
hts_tpool_dispatch3
[function]
[call site]
01697
sam_format_worker
[function]
[call site]
01698
pthread_mutex_lock
[call site]
01699
pthread_mutex_unlock
[call site]
01700
calloc
[call site]
01701
sam_state_err
[function]
[call site]
01702
pthread_mutex_lock
[call site]
01703
pthread_mutex_unlock
[call site]
01704
sam_format1_append
[function]
[call site]
01705
kputsn_
[function]
[call site]
01706
__errno_location
[call site]
01707
ks_resize
[function]
[call site]
01708
kputc_
[function]
[call site]
01709
ks_resize
[function]
[call site]
01710
kputw
[function]
[call site]
01711
ks_resize
[function]
[call site]
01712
kputuw
[function]
[call site]
01713
ks_resize
[function]
[call site]
01714
ks_resize
[function]
[call site]
01715
kputc_
[function]
[call site]
01716
kputs
[function]
[call site]
01717
kputc_
[function]
[call site]
01718
kputsn_
[function]
[call site]
01719
kputll
[function]
[call site]
01720
ks_resize
[function]
[call site]
01721
kputuw
[function]
[call site]
01722
kputc_
[function]
[call site]
01723
kputw
[function]
[call site]
01724
kputc_
[function]
[call site]
01725
kputw
[function]
[call site]
01726
kputc_
[function]
[call site]
01727
kputc_
[function]
[call site]
01728
kputc_
[function]
[call site]
01729
kputsn_
[function]
[call site]
01730
kputsn_
[function]
[call site]
01731
kputs
[function]
[call site]
01732
kputc_
[function]
[call site]
01733
kputll
[function]
[call site]
01734
kputc_
[function]
[call site]
01735
kputll
[function]
[call site]
01736
kputc_
[function]
[call site]
01737
ks_resize
[function]
[call site]
01738
nibble2base
[function]
[call site]
01739
add33
[function]
[call site]
01740
kputsn_
[function]
[call site]
01741
kputc_
[function]
[call site]
01742
sam_format_aux1
[function]
[call site]
01743
kputsn_
[function]
[call site]
01744
kputc_
[function]
[call site]
01745
kputsn_
[function]
[call site]
01746
kputw
[function]
[call site]
01747
kputsn_
[function]
[call site]
01748
kputw
[function]
[call site]
01749
kputsn_
[function]
[call site]
01750
le_to_u16
[function]
[call site]
01751
kputuw
[function]
[call site]
01752
kputsn_
[function]
[call site]
01753
le_to_i16
[function]
[call site]
01754
le_to_u16
[function]
[call site]
01755
kputw
[function]
[call site]
01756
kputsn_
[function]
[call site]
01757
le_to_u32
[function]
[call site]
01758
kputuw
[function]
[call site]
01759
kputsn_
[function]
[call site]
01760
le_to_i32
[function]
[call site]
01761
le_to_u32
[function]
[call site]
01762
kputw
[function]
[call site]
01763
kputsn_
[function]
[call site]
01764
kputc_
[function]
[call site]
01765
le_to_float
[function]
[call site]
01766
le_to_u32
[function]
[call site]
01767
ksprintf
[function]
[call site]
01768
le_to_double
[function]
[call site]
01769
le_to_u64
[function]
[call site]
01770
ksprintf
[function]
[call site]
01771
kputc_
[function]
[call site]
01772
kputc_
[function]
[call site]
01773
kputc_
[function]
[call site]
01774
kputsn
[function]
[call site]
01775
le_to_u32
[function]
[call site]
01776
kputsn_
[function]
[call site]
01777
kputc
[function]
[call site]
01778
ks_expand
[function]
[call site]
01779
__errno_location
[call site]
01780
ks_resize
[function]
[call site]
01781
kputw
[function]
[call site]
01782
ks_expand
[function]
[call site]
01783
kputuw
[function]
[call site]
01784
ks_expand
[function]
[call site]
01785
le_to_i16
[function]
[call site]
01786
kputw
[function]
[call site]
01787
ks_expand
[function]
[call site]
01788
le_to_u16
[function]
[call site]
01789
kputuw
[function]
[call site]
01790
ks_expand
[function]
[call site]
01791
le_to_i32
[function]
[call site]
01792
kputw
[function]
[call site]
01793
ks_expand
[function]
[call site]
01794
le_to_u32
[function]
[call site]
01795
kputuw
[function]
[call site]
01796
ks_expand
[function]
[call site]
01797
le_to_float
[function]
[call site]
01798
kputd
[function]
[call site]
01799
__errno_location
[call site]
01800
hts_log
[function]
[call site]
01801
__errno_location
[call site]
01802
kputsn
[function]
[call site]
01803
hts_log
[function]
[call site]
01804
__errno_location
[call site]
01805
hts_log
[function]
[call site]
01806
__errno_location
[call site]
01807
__errno_location
[call site]
01808
sam_state_err
[function]
[call site]
01809
kputc
[function]
[call site]
01810
pthread_mutex_lock
[call site]
01811
pthread_mutex_unlock
[call site]
01812
hts_tpool_process_flush
[function]
[call site]
01813
pthread_mutex_lock
[call site]
01814
pthread_mutex_unlock
[call site]
01815
hts_tpool_process_empty
[function]
[call site]
01816
hts_usleep
[function]
[call site]
01817
pthread_mutex_lock
[call site]
01818
hts_tpool_process_is_shutdown
[function]
[call site]
01819
pthread_mutex_unlock
[call site]
01820
hts_tpool_process_shutdown
[function]
[call site]
01821
pthread_join
[call site]
01822
hts_tpool_process_destroy
[function]
[call site]
01823
hts_tpool_destroy
[function]
[call site]
01824
pthread_mutex_destroy
[call site]
01825
pthread_mutex_destroy
[call site]
01826
pthread_cond_destroy
[call site]
01827
sam_free_sp_bams
[function]
[call site]
01828
sam_free_sp_bams
[function]
[call site]
01829
bam_hdr_destroy
[function]
[call site]
01830
sam_hdr_destroy
[function]
[call site]
01831
bgzf_thread_pool
[function]
[call site]
01832
calloc
[call site]
01833
hts_tpool_size
[function]
[call site]
01834
hts_tpool_process_init
[function]
[call site]
01835
hts_tpool_process_ref_incr
[function]
[call site]
01836
pthread_mutex_lock
[call site]
01837
pthread_mutex_unlock
[call site]
01838
pool_create
[function]
[call site]
01839
pthread_mutex_init
[call site]
01840
pthread_mutex_init
[call site]
01841
pthread_mutex_init
[call site]
01842
pthread_cond_init
[call site]
01843
pthread_create
[call site]
01844
hts_tpool_destroy
[function]
[call site]
01845
hts_get_bgzfp
[function]
[call site]
01846
bgzf_mt
[function]
[call site]
01847
hts_tpool_init
[function]
[call site]
01848
bgzf_thread_pool
[function]
[call site]
01849
hts_tpool_destroy
[function]
[call site]
01850
hts_set_opt
[function]
[call site]
01851
hts_hfile
[function]
[call site]
01852
bgzf_hfile
[function]
[call site]
01853
cram_hfile
[function]
[call site]
01854
bgzf_hfile
[function]
[call site]
01855
hfile_set_blksize
[function]
[call site]
01856
hts_log
[function]
[call site]
01857
hts_log
[function]
[call site]
01858
hts_set_thread_pool
[function]
[call site]
01859
sam_set_thread_pool
[function]
[call site]
01860
hts_get_bgzfp
[function]
[call site]
01861
bgzf_thread_pool
[function]
[call site]
01862
hts_set_opt
[function]
[call site]
01863
hts_set_cache_size
[function]
[call site]
01864
hts_get_bgzfp
[function]
[call site]
01865
bgzf_set_cache_size
[function]
[call site]
01866
fastq_state_set
[function]
[call site]
01867
fastq_state_init
[function]
[call site]
01868
strcmp
[call site]
01872
kh_init_tag
[function]
[call site]
01873
calloc
[call site]
01874
strlen
[call site]
01875
hts_log
[function]
[call site]
01876
kh_put_tag
[function]
[call site]
01877
kh_resize_tag
[function]
[call site]
01878
realloc
[call site]
01879
strncpy
[call site]
01880
strcmp
[call site]
01881
__ctype_b_loc
[call site]
01882
isalnum_c
[function]
[call site]
01883
strncpy
[call site]
01884
hts_log
[function]
[call site]
01885
regfree
[call site]
01886
regcomp
[call site]
01887
hts_log
[function]
[call site]
01888
fastq_state_set
[function]
[call site]
01889
fastq_state_set
[function]
[call site]
01890
cram_set_option
[function]
[call site]
01891
hts_set_filter_expression
[function]
[call site]
01892
hts_filter_free
[function]
[call site]
01893
regfree
[call site]
01894
hts_filter_init
[function]
[call site]
01895
cram_set_voption
[function]
[call site]
01899
hts_set_opt
[function]
[call site]
01900
hts_opt_free
[function]
[call site]
01901
hts_opt_free
[function]
[call site]
01902
hclose_abruptly
[function]
[call site]
01903
hts_log
[function]
[call site]
01904
hclose_abruptly
[function]
[call site]
01905
hclose
[function]
[call site]
01906
abort
[call site]
01907
hts_close
[function]
[call site]
01908
__errno_location
[call site]
01909
bgzf_close
[function]
[call site]
01910
cram_eof
[function]
[call site]
01911
hts_log
[function]
[call site]
01912
cram_close
[function]
[call site]
01913
cram_update_curr_slice
[function]
[call site]
01914
cram_flush_container_mt
[function]
[call site]
01915
pthread_mutex_lock
[call site]
01916
reset_metrics
[function]
[call site]
01917
pthread_mutex_unlock
[call site]
01918
hts_tpool_process_flush
[function]
[call site]
01919
pthread_mutex_lock
[call site]
01920
pthread_mutex_unlock
[call site]
01921
cram_flush_container
[function]
[call site]
01922
cram_encode_container
[function]
[call site]
01923
pthread_mutex_lock
[call site]
01924
hts_log
[function]
[call site]
01925
hts_log
[function]
[call site]
01926
pthread_mutex_unlock
[call site]
01927
pthread_mutex_lock
[call site]
01928
pthread_mutex_unlock
[call site]
01929
cram_get_ref
[function]
[call site]
01930
pthread_mutex_lock
[call site]
01931
hts_log
[function]
[call site]
01932
pthread_mutex_unlock
[call site]
01933
pthread_mutex_lock
[call site]
01934
hts_log
[function]
[call site]
01935
cram_populate_ref
[function]
[call site]
01936
getenv
[call site]
01937
getenv
[call site]
01938
hts_log
[function]
[call site]
01939
sam_hrecs_find_type_id
[function]
[call site]
01940
sam_hrecs_find_key
[function]
[call site]
01941
hts_log
[function]
[call site]
01942
expand_cache_path
[function]
[call site]
01943
strchr
[call site]
01944
strncpy
[call site]
01945
strlen
[call site]
01946
strcpy
[call site]
01947
strtol
[call site]
01948
strlen
[call site]
01949
strncpy
[call site]
01950
strlen
[call site]
01951
strcpy
[call site]
01952
strlen
[call site]
01953
strcpy
[call site]
01954
stat
[call site]
01955
stat
[call site]
01956
bgzf_open
[function]
[call site]
01957
string_dup
[function]
[call site]
01958
bgzf_close
[function]
[call site]
01959
open_path_mfile
[function]
[call site]
01960
getenv
[call site]
01961
tokenise_search_path
[function]
[call site]
01962
strlen
[call site]
01963
strncmp
[call site]
01964
strncmp
[call site]
01965
strncmp
[call site]
01966
strncmp
[call site]
01967
strncmp
[call site]
01968
strncmp
[call site]
01969
strncmp
[call site]
01970
strncmp
[call site]
01971
strncmp
[call site]
01972
strncmp
[call site]
01973
find_file_url
[function]
[call site]
01974
expand_path
[function]
[call site]
01975
strlen
[call site]
01976
strlen
[call site]
01977
hts_log
[function]
[call site]
01978
strchr
[call site]
01979
strtol
[call site]
01980
hopen
[function]
[call site]
01981
__errno_location
[call site]
01982
__errno_location
[call site]
01983
strerror
[call site]
01984
hts_log
[function]
[call site]
01985
mfcreate
[function]
[call site]
01986
hread
[function]
[call site]
01987
mfwrite
[function]
[call site]
01988
realloc
[call site]
01989
hclose_abruptly
[function]
[call site]
01990
hclose
[function]
[call site]
01991
__errno_location
[call site]
01992
strerror
[call site]
01993
hts_log
[function]
[call site]
01994
mrewind
[function]
[call site]
01995
mfdestroy
[function]
[call site]
01996
strncmp
[call site]
01997
hisremote
[function]
[call site]
01998
find_file_url
[function]
[call site]
01999
find_file_dir
[function]
[call site]
02000
expand_path
[function]
[call site]
02001
is_file
[function]
[call site]
02002
stat
[call site]
02003
mfopen
[function]
[call site]
02004
fopen
[call site]
02005
mfreopen
[function]
[call site]
02006
strchr
[call site]
02007
strchr
[call site]
02008
strchr
[call site]
02009
strchr
[call site]
02010
strchr
[call site]
02011
strchr
[call site]
02012
strchr
[call site]
02013
mfcreate
[function]
[call site]
02014
mfmmap
[function]
[call site]
02015
mfload
[function]
[call site]
02019
stat
[call site]
02020
realloc
[call site]
02021
fread
[call site]
02022
feof
[call site]
02023
fseek
[call site]
02024
mfcreate
[function]
[call site]
02025
hts_log
[function]
[call site]
02026
fseek
[call site]
02027
strlen
[call site]
02028
strcpy
[call site]
02029
strrchr
[call site]
02030
find_file_dir
[function]
[call site]
02031
mfsteal
[function]
[call site]
02032
mfdetach
[function]
[call site]
02033
mfflush
[function]
[call site]
02034
fclose
[call site]
02035
mfdestroy
[function]
[call site]
02036
sam_hrecs_find_key
[function]
[call site]
02037
strstr
[call site]
02038
strncmp
[call site]
02039
hts_log
[function]
[call site]
02040
strncmp
[call site]
02041
bgzf_close
[function]
[call site]
02042
refs_load_fai
[function]
[call site]
02043
sanitise_SQ_lines
[function]
[call site]
02044
bgzf_close
[function]
[call site]
02045
refs2id
[function]
[call site]
02046
expand_cache_path
[function]
[call site]
02047
hts_log
[function]
[call site]
02048
mkdir_prefix
[function]
[call site]
02049
strrchr
[call site]
02050
is_directory
[function]
[call site]
02051
stat
[call site]
02052
mkdir
[call site]
02053
chmod
[call site]
02054
mkdir_prefix
[function]
[call site]
02055
mkdir
[call site]
02056
chmod
[call site]
02057
hts_open_tmpfile
[function]
[call site]
02058
getpid
[call site]
02059
time
[call site]
02060
clock
[call site]
02061
ks_clear
[function]
[call site]
02062
ksprintf
[function]
[call site]
02063
hopen
[function]
[call site]
02064
__errno_location
[call site]
02065
perror
[call site]
02066
hts_md5_init
[function]
[call site]
02067
hts_md5_reset
[function]
[call site]
02068
hclose_abruptly
[function]
[call site]
02069
unlink
[call site]
02070
hts_md5_update
[function]
[call site]
02071
body
[function]
[call site]
02072
body
[function]
[call site]
02073
hts_md5_final
[function]
[call site]
02074
body
[function]
[call site]
02075
body
[function]
[call site]
02076
hts_md5_destroy
[function]
[call site]
02077
hts_md5_hex
[function]
[call site]
02078
strncmp
[call site]
02079
hts_log
[function]
[call site]
02080
hclose_abruptly
[function]
[call site]
02081
unlink
[call site]
02082
hwrite
[function]
[call site]
02083
hclose
[function]
[call site]
02084
chmod
[call site]
02085
rename
[call site]
02086
__errno_location
[call site]
02087
strerror
[call site]
02088
hts_log
[function]
[call site]
02089
unlink
[call site]
02090
hts_log
[function]
[call site]
02091
hts_log
[function]
[call site]
02092
pthread_mutex_unlock
[call site]
02093
pthread_mutex_unlock
[call site]
02094
cram_ref_incr_locked
[function]
[call site]
02095
cram_ref_incr_locked
[function]
[call site]
02096
cram_ref_load
[function]
[call site]
02097
__assert_fail
[call site]
02098
__assert_fail
[call site]
02099
ref_entry_free_seq
[function]
[call site]
02100
strcmp
[call site]
02101
bgzf_close
[function]
[call site]
02102
bgzf_open_ref
[function]
[call site]
02103
load_ref_portion
[function]
[call site]
02104
bgzf_useek
[function]
[call site]
02105
hseek
[function]
[call site]
02106
bgzf_read_block
[function]
[call site]
02107
bgzf_seek_common
[function]
[call site]
02108
pthread_mutex_lock
[call site]
02109
pthread_cond_signal
[call site]
02110
hts_tpool_wake_dispatch
[function]
[call site]
02111
pthread_cond_wait
[call site]
02112
pthread_cond_signal
[call site]
02113
abort
[call site]
02114
__errno_location
[call site]
02115
pthread_mutex_unlock
[call site]
02116
pthread_mutex_unlock
[call site]
02117
hseek
[function]
[call site]
02118
bgzf_read_block
[function]
[call site]
02119
__assert_fail
[call site]
02120
perror
[call site]
02121
bgzf_read
[function]
[call site]
02122
__assert_fail
[call site]
02123
bgzf_read_block
[function]
[call site]
02124
hts_log
[function]
[call site]
02125
bgzf_htell
[function]
[call site]
02126
hts_log
[function]
[call site]
02127
bgzf_htell
[function]
[call site]
02128
perror
[call site]
02129
isspace_c
[function]
[call site]
02130
isspace_c
[function]
[call site]
02131
isspace_c
[function]
[call site]
02132
hts_log
[function]
[call site]
02133
toupper_c
[function]
[call site]
02134
toupper
[call site]
02135
pthread_mutex_unlock
[call site]
02136
pthread_mutex_unlock
[call site]
02137
cram_ref_incr_locked
[function]
[call site]
02138
pthread_mutex_unlock
[call site]
02139
pthread_mutex_unlock
[call site]
02140
pthread_mutex_unlock
[call site]
02141
pthread_mutex_unlock
[call site]
02142
strcmp
[call site]
02143
bgzf_close
[function]
[call site]
02144
bgzf_open_ref
[function]
[call site]
02145
pthread_mutex_unlock
[call site]
02146
pthread_mutex_unlock
[call site]
02147
load_ref_portion
[function]
[call site]
02148
pthread_mutex_unlock
[call site]
02149
pthread_mutex_unlock
[call site]
02150
pthread_mutex_unlock
[call site]
02151
pthread_mutex_unlock
[call site]
02152
hts_log
[function]
[call site]
02153
hts_log
[function]
[call site]
02154
pthread_mutex_lock
[call site]
02155
pthread_mutex_unlock
[call site]
02156
hts_log
[function]
[call site]
02157
hts_log
[function]
[call site]
02158
hts_log
[function]
[call site]
02159
hts_log
[function]
[call site]
02160
pthread_mutex_lock
[call site]
02161
pthread_mutex_unlock
[call site]
02162
validate_md5
[function]
[call site]
02163
sam_hrecs_find_type_id
[function]
[call site]
02164
sam_hrecs_find_key
[function]
[call site]
02165
hts_md5_init
[function]
[call site]
02166
hts_md5_update
[function]
[call site]
02167
hts_md5_final
[function]
[call site]
02168
hts_md5_destroy
[function]
[call site]
02169
hts_md5_hex
[function]
[call site]
02170
strcmp
[call site]
02171
hts_log
[function]
[call site]
02172
hts_log
[function]
[call site]
02173
cram_ref_incr
[function]
[call site]
02174
pthread_mutex_lock
[call site]
02175
cram_ref_incr_locked
[function]
[call site]
02176
pthread_mutex_unlock
[call site]
02177
cram_get_ref
[function]
[call site]
02178
validate_md5
[function]
[call site]
02179
hts_log
[function]
[call site]
02180
__assert_fail
[call site]
02181
lossy_read_names
[function]
[call site]
02182
kh_init_m_s2u64
[function]
[call site]
02183
calloc
[call site]
02184
expected_template_count
[function]
[call site]
02185
bam_aux_get
[function]
[call site]
02186
bam_aux_first
[function]
[call site]
02187
__errno_location
[call site]
02188
skip_aux
[function]
[call site]
02189
aux_type2size
[function]
[call site]
02190
memchr
[call site]
02191
aux_type2size
[function]
[call site]
02192
le_to_u32
[function]
[call site]
02193
bam_aux_next
[function]
[call site]
02194
skip_aux
[function]
[call site]
02195
__errno_location
[call site]
02196
hts_log
[function]
[call site]
02197
__errno_location
[call site]
02198
hts_log
[function]
[call site]
02199
__errno_location
[call site]
02200
bam_data_end
[function]
[call site]
02201
bam_aux2i_end
[function]
[call site]
02202
__errno_location
[call site]
02203
__errno_location
[call site]
02204
__errno_location
[call site]
02205
le_to_i16
[function]
[call site]
02206
le_to_u16
[function]
[call site]
02207
__errno_location
[call site]
02208
le_to_u16
[function]
[call site]
02209
__errno_location
[call site]
02210
le_to_i32
[function]
[call site]
02211
le_to_u32
[function]
[call site]
02212
__errno_location
[call site]
02213
le_to_u32
[function]
[call site]
02214
__errno_location
[call site]
02215
bam_aux_get
[function]
[call site]
02216
kh_put_m_s2u64
[function]
[call site]
02217
kh_resize_m_s2u64
[function]
[call site]
02218
realloc
[call site]
02219
__ac_FNV1a_hash_string
[function]
[call site]
02220
strcmp
[call site]
02221
kh_get_m_s2u64
[function]
[call site]
02222
kh_destroy_m_s2u64
[function]
[call site]
02223
cram_generate_reference
[function]
[call site]
02224
extend_ref
[function]
[call site]
02225
realloc
[call site]
02226
realloc
[call site]
02227
hts_log
[function]
[call site]
02228
cram_add_to_ref
[function]
[call site]
02229
bam_aux_get
[function]
[call site]
02230
cram_add_to_ref_MD
[function]
[call site]
02231
bam_cigar2rlen
[function]
[call site]
02232
extend_ref
[function]
[call site]
02233
__ctype_b_loc
[call site]
02234
hts_str2uint
[function]
[call site]
02235
extend_ref
[function]
[call site]
02236
next_cigar_op
[function]
[call site]
02237
hts_log
[function]
[call site]
02238
__ctype_b_loc
[call site]
02239
extend_ref
[function]
[call site]
02240
next_cigar_op
[function]
[call site]
02241
hts_log
[function]
[call site]
02242
extend_ref
[function]
[call site]
02243
next_cigar_op
[function]
[call site]
02244
hts_log
[function]
[call site]
02245
extend_ref
[function]
[call site]
02246
hts_log
[function]
[call site]
02247
hts_log
[function]
[call site]
02248
pthread_mutex_lock
[call site]
02249
pthread_mutex_unlock
[call site]
02250
pthread_mutex_lock
[call site]
02251
pthread_mutex_unlock
[call site]
02252
cram_ref_decr
[function]
[call site]
02253
pthread_mutex_lock
[call site]
02254
cram_ref_decr_locked
[function]
[call site]
02255
__assert_fail
[call site]
02256
ref_entry_free_seq
[function]
[call site]
02257
pthread_mutex_unlock
[call site]
02258
cram_get_ref
[function]
[call site]
02259
hts_log
[function]
[call site]
02260
validate_md5
[function]
[call site]
02261
process_one_read
[function]
[call site]
02262
bam_aux_get
[function]
[call site]
02263
bam_aux_get
[function]
[call site]
02264
cram_stats_add
[function]
[call site]
02265
kh_init_m_i2i
[function]
[call site]
02266
calloc
[call site]
02267
kh_put_m_i2i
[function]
[call site]
02268
kh_resize_m_i2i
[function]
[call site]
02269
realloc
[call site]
02270
cram_stats_add
[function]
[call site]
02271
cram_stats_add
[function]
[call site]
02272
block_grow
[function]
[call site]
02273
block_resize
[function]
[call site]
02274
block_resize_exact
[function]
[call site]
02275
realloc
[call site]
02276
block_grow
[function]
[call site]
02277
nibble2base
[function]
[call site]
02278
hts_log
[function]
[call site]
02279
realloc
[call site]
02280
hts_log
[function]
[call site]
02281
kputuw
[function]
[call site]
02282
ks_resize
[function]
[call site]
02283
ks_resize
[function]
[call site]
02284
kputc
[function]
[call site]
02285
ks_resize
[function]
[call site]
02286
cram_add_substitution
[function]
[call site]
02287
cram_stats_add
[function]
[call site]
02288
cram_stats_add
[function]
[call site]
02289
cram_stats_add
[function]
[call site]
02290
block_append_char
[function]
[call site]
02291
block_grow
[function]
[call site]
02292
cram_add_feature
[function]
[call site]
02293
realloc
[call site]
02294
cram_stats_add
[function]
[call site]
02295
cram_stats_add
[function]
[call site]
02296
cram_stats_add
[function]
[call site]
02297
cram_add_bases
[function]
[call site]
02298
cram_add_feature
[function]
[call site]
02299
cram_add_base
[function]
[call site]
02300
cram_stats_add
[function]
[call site]
02301
cram_stats_add
[function]
[call site]
02302
block_append_char
[function]
[call site]
02303
cram_add_feature
[function]
[call site]
02304
cram_add_base
[function]
[call site]
02305
kputuw
[function]
[call site]
02306
kputc_
[function]
[call site]
02307
ks_resize
[function]
[call site]
02308
kputsn
[function]
[call site]
02309
ks_resize
[function]
[call site]
02310
cram_add_deletion
[function]
[call site]
02311
cram_stats_add
[function]
[call site]
02312
cram_add_feature
[function]
[call site]
02313
cram_add_skip
[function]
[call site]
02314
cram_stats_add
[function]
[call site]
02315
cram_add_feature
[function]
[call site]
02316
cram_add_insertion
[function]
[call site]
02317
cram_stats_add
[function]
[call site]
02318
block_append
[function]
[call site]
02319
block_grow
[function]
[call site]
02320
block_append_char
[function]
[call site]
02321
block_append_char
[function]
[call site]
02322
cram_add_feature
[function]
[call site]
02323
cram_add_quality
[function]
[call site]
02324
cram_stats_add
[function]
[call site]
02325
block_append_char
[function]
[call site]
02326
cram_add_feature
[function]
[call site]
02327
cram_add_softclip
[function]
[call site]
02328
block_append
[function]
[call site]
02329
block_append_char
[function]
[call site]
02330
block_append
[function]
[call site]
02331
block_append_char
[function]
[call site]
02332
block_append_char
[function]
[call site]
02333
cram_add_feature
[function]
[call site]
02334
cram_add_quality
[function]
[call site]
02335
cram_add_quality
[function]
[call site]
02336
cram_add_hardclip
[function]
[call site]
02337
cram_stats_add
[function]
[call site]
02338
cram_add_feature
[function]
[call site]
02339
cram_add_pad
[function]
[call site]
02340
cram_stats_add
[function]
[call site]
02341
cram_add_feature
[function]
[call site]
02342
hts_log
[function]
[call site]
02343
hts_log
[function]
[call site]
02344
cram_stats_add
[function]
[call site]
02345
kputuw
[function]
[call site]
02346
cram_stats_add
[function]
[call site]
02347
cram_encode_aux
[function]
[call site]
02348
bam_data_end
[function]
[call site]
02349
hts_log
[function]
[call site]
02350
sam_hrecs_find_rg
[function]
[call site]
02351
kh_get_m_s2i
[function]
[call site]
02352
block_append
[function]
[call site]
02353
hts_log
[function]
[call site]
02354
strncasecmp
[call site]
02355
hts_log
[function]
[call site]
02356
block_append
[function]
[call site]
02357
bam_aux2i_end
[function]
[call site]
02358
hts_log
[function]
[call site]
02359
block_append
[function]
[call site]
02360
block_append
[function]
[call site]
02361
kh_put_m_tagmap
[function]
[call site]
02362
kh_resize_m_tagmap
[function]
[call site]
02363
realloc
[call site]
02364
pthread_mutex_lock
[call site]
02365
kh_put_m_metrics
[function]
[call site]
02366
kh_resize_m_metrics
[function]
[call site]
02367
realloc
[call site]
02368
pthread_mutex_unlock
[call site]
02369
cram_new_metrics
[function]
[call site]
02370
kh_del_m_metrics
[function]
[call site]
02371
pthread_mutex_unlock
[call site]
02372
pthread_mutex_unlock
[call site]
02373
calloc
[call site]
02374
cram_encoder_init
[function]
[call site]
02375
cram_encoding2str
[function]
[call site]
02376
hts_log
[function]
[call site]
02377
cram_encoding2str
[function]
[call site]
02378
hts_log
[function]
[call site]
02379
abort
[call site]
02380
cram_stats_add
[function]
[call site]
02381
cram_stats_encoding
[function]
[call site]
02382
realloc
[call site]
02383
realloc
[call site]
02384
realloc
[call site]
02385
realloc
[call site]
02386
__assert_fail
[call site]
02387
cram_encoder_init
[function]
[call site]
02388
cram_stats_add
[function]
[call site]
02389
cram_stats_encoding
[function]
[call site]
02390
cram_encoder_init
[function]
[call site]
02391
cram_stats_add
[function]
[call site]
02392
cram_stats_encoding
[function]
[call site]
02393
cram_encoder_init
[function]
[call site]
02394
cram_encoder_init
[function]
[call site]
02395
hts_log
[function]
[call site]
02396
pthread_mutex_lock
[call site]
02397
pthread_mutex_unlock
[call site]
02398
cram_new_block
[function]
[call site]
02399
block_append_char
[function]
[call site]
02400
cram_new_block
[function]
[call site]
02401
block_append
[function]
[call site]
02402
cram_new_block
[function]
[call site]
02403
block_append
[function]
[call site]
02404
cram_new_block
[function]
[call site]
02405
block_append
[function]
[call site]
02406
cram_new_block
[function]
[call site]
02407
hts_log
[function]
[call site]
02408
cram_new_block
[function]
[call site]
02409
cram_new_block
[function]
[call site]
02410
hts_log
[function]
[call site]
02411
hts_log
[function]
[call site]
02412
block_append_char
[function]
[call site]
02413
kh_put_m_s2i
[function]
[call site]
02414
kh_resize_m_s2i
[function]
[call site]
02415
__ac_FNV1a_hash_string
[function]
[call site]
02416
string_ndup
[function]
[call site]
02417
cram_stats_add
[function]
[call site]
02418
sam_hrecs_find_rg
[function]
[call site]
02419
cram_stats_add
[function]
[call site]
02420
block_grow
[function]
[call site]
02421
block_grow
[function]
[call site]
02422
cram_stats_add
[function]
[call site]
02423
kh_put_m_s2i
[function]
[call site]
02424
string_ndup
[function]
[call site]
02425
cram_stats_add
[function]
[call site]
02426
cram_stats_add
[function]
[call site]
02427
cram_stats_del
[function]
[call site]
02428
__assert_fail
[call site]
02429
kh_get_m_i2i
[function]
[call site]
02430
kh_del_m_i2i
[function]
[call site]
02431
hts_log
[function]
[call site]
02432
hts_log
[function]
[call site]
02433
cram_stats_del
[function]
[call site]
02434
cram_stats_del
[function]
[call site]
02435
cram_stats_del
[function]
[call site]
02436
cram_stats_add
[function]
[call site]
02437
cram_stats_del
[function]
[call site]
02438
cram_stats_add
[function]
[call site]
02439
cram_stats_add
[function]
[call site]
02440
cram_stats_add
[function]
[call site]
02441
cram_stats_add
[function]
[call site]
02442
cram_stats_add
[function]
[call site]
02443
cram_stats_add
[function]
[call site]
02444
cram_stats_add
[function]
[call site]
02445
cram_stats_add
[function]
[call site]
02446
add_read_names
[function]
[call site]
02447
block_append
[function]
[call site]
02448
block_append
[function]
[call site]
02449
cram_stats_add
[function]
[call site]
02450
calloc
[call site]
02451
__assert_fail
[call site]
02452
cram_ref_decr
[function]
[call site]
02453
pthread_mutex_lock
[call site]
02454
pthread_mutex_unlock
[call site]
02455
cram_stats_encoding
[function]
[call site]
02456
pthread_mutex_lock
[call site]
02457
pthread_mutex_unlock
[call site]
02458
hts_log
[function]
[call site]
02459
hts_md5_init
[function]
[call site]
02460
hts_md5_update
[function]
[call site]
02461
hts_md5_final
[function]
[call site]
02462
hts_md5_destroy
[function]
[call site]
02463
cram_stats_encoding
[function]
[call site]
02464
cram_encoder_init
[function]
[call site]
02465
cram_stats_encoding
[function]
[call site]
02466
cram_encoder_init
[function]
[call site]
02467
cram_stats_encoding
[function]
[call site]
02468
cram_encoder_init
[function]
[call site]
02469
cram_encoder_init
[function]
[call site]
02470
cram_encoder_init
[function]
[call site]
02471
cram_stats_encoding
[function]
[call site]
02472
cram_encoder_init
[function]
[call site]
02473
cram_stats_encoding
[function]
[call site]
02474
cram_encoder_init
[function]
[call site]
02475
cram_stats_encoding
[function]
[call site]
02476
cram_encoder_init
[function]
[call site]
02477
cram_stats_encoding
[function]
[call site]
02478
cram_encoder_init
[function]
[call site]
02479
cram_stats_encoding
[function]
[call site]
02480
cram_encoder_init
[function]
[call site]
02481
cram_stats_encoding
[function]
[call site]
02482
cram_encoder_init
[function]
[call site]
02483
cram_stats_encoding
[function]
[call site]
02484
cram_encoder_init
[function]
[call site]
02485
cram_stats_encoding
[function]
[call site]
02486
cram_encoder_init
[function]
[call site]
02487
cram_stats_encoding
[function]
[call site]
02488
cram_encoder_init
[function]
[call site]
02489
cram_stats_encoding
[function]
[call site]
02490
cram_encoder_init
[function]
[call site]
02491
cram_stats_encoding
[function]
[call site]
02492
cram_encoder_init
[function]
[call site]
02493
cram_stats_encoding
[function]
[call site]
02494
cram_encoder_init
[function]
[call site]
02495
cram_stats_encoding
[function]
[call site]
02496
cram_encoder_init
[function]
[call site]
02497
cram_encoder_init
[function]
[call site]
02498
cram_stats_encoding
[function]
[call site]
02499
cram_encoder_init
[function]
[call site]
02500
cram_stats_encoding
[function]
[call site]
02501
cram_encoder_init
[function]
[call site]
02502
cram_stats_encoding
[function]
[call site]
02503
cram_encoder_init
[function]
[call site]
02504
cram_stats_encoding
[function]
[call site]
02505
cram_encoder_init
[function]
[call site]
02506
cram_stats_encoding
[function]
[call site]
02507
cram_encoder_init
[function]
[call site]
02508
cram_stats_encoding
[function]
[call site]
02509
cram_encoder_init
[function]
[call site]
02510
cram_stats_encoding
[function]
[call site]
02511
cram_encoder_init
[function]
[call site]
02512
cram_stats_encoding
[function]
[call site]
02513
cram_encoder_init
[function]
[call site]
02514
cram_encoder_init
[function]
[call site]
02515
cram_encoder_init
[function]
[call site]
02516
cram_encoder_init
[function]
[call site]
02517
cram_encoder_init
[function]
[call site]
02518
hts_log
[function]
[call site]
02519
cram_encode_slice
[function]
[call site]
02520
calloc
[call site]
02521
cram_new_block
[function]
[call site]
02522
cram_new_block
[function]
[call site]
02523
cram_new_block
[function]
[call site]
02524
block_append
[function]
[call site]
02525
cram_allocate_block
[function]
[call site]
02526
cram_new_block
[function]
[call site]
02527
cram_new_block
[function]
[call site]
02528
cram_allocate_block
[function]
[call site]
02529
cram_allocate_block
[function]
[call site]
02530
cram_allocate_block
[function]
[call site]
02531
cram_allocate_block
[function]
[call site]
02532
cram_allocate_block
[function]
[call site]
02533
cram_new_block
[function]
[call site]
02534
cram_allocate_block
[function]
[call site]
02535
cram_new_block
[function]
[call site]
02536
cram_encode_slice_read
[function]
[call site]
02537
hts_log
[function]
[call site]
02538
cram_free_block
[function]
[call site]
02539
cram_free_block
[function]
[call site]
02540
cram_free_block
[function]
[call site]
02541
cram_free_block
[function]
[call site]
02542
cram_compress_slice
[function]
[call site]
02543
cram_compress_block2
[function]
[call site]
02544
cram_compress_block3
[function]
[call site]
02545
pthread_mutex_lock
[call site]
02546
pthread_mutex_unlock
[call site]
02547
cram_compress_by_method
[function]
[call site]
02548
zlib_mem_deflate
[function]
[call site]
02549
deflateInit2_
[call site]
02550
hts_log
[function]
[call site]
02551
hts_log
[function]
[call site]
02552
deflate
[call site]
02553
hts_log
[function]
[call site]
02554
deflate
[call site]
02555
hts_log
[function]
[call site]
02556
deflateEnd
[call site]
02557
hts_log
[function]
[call site]
02558
BZ2_bzBuffToBuffCompress
[call site]
02559
fqz_compress
[function]
[call site]
02560
compress_block_fqz2f
[function]
[call site]
02561
fqz_pick_parameters
[function]
[call site]
02562
calloc
[call site]
02563
fqz_qual_stats
[function]
[call site]
02564
calloc
[call site]
02565
memcmp
[call site]
02566
fast_log
[function]
[call site]
02567
fast_log
[function]
[call site]
02568
fast_log
[function]
[call site]
02569
fast_log
[function]
[call site]
02570
fast_log
[function]
[call site]
02571
fast_log
[function]
[call site]
02572
fast_log
[function]
[call site]
02573
log
[call site]
02574
log
[call site]
02575
log
[call site]
02576
log
[call site]
02577
log
[call site]
02578
log
[call site]
02579
log
[call site]
02580
log
[call site]
02581
log
[call site]
02582
var_put_u32
[function]
[call site]
02583
var_put_u32_safe
[function]
[call site]
02584
fqz_store_parameters
[function]
[call site]
02585
store_array
[function]
[call site]
02586
fqz_store_parameters1
[function]
[call site]
02587
store_array
[function]
[call site]
02588
store_array
[function]
[call site]
02589
store_array
[function]
[call site]
02590
fqz_create_models
[function]
[call site]
02591
RC_SetOutput
[function]
[call site]
02592
RC_SetOutputEnd
[function]
[call site]
02593
RC_StartEncode
[function]
[call site]
02594
compress_new_read
[function]
[call site]
02595
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02596
RC_Encode
[function]
[call site]
02597
RC_ShiftLowCheck
[function]
[call site]
02598
SIMPLE_MODEL256_normalize
[function]
[call site]
02599
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02600
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02601
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02602
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02603
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02604
SIMPLE_MODEL2_normalize
[function]
[call site]
02605
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02606
memcmp
[call site]
02607
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02608
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02609
mm_prefetch
[function]
[call site]
02610
fqz_update_ctx
[function]
[call site]
02611
mm_prefetch
[function]
[call site]
02612
fqz_update_ctx
[function]
[call site]
02613
mm_prefetch
[function]
[call site]
02614
fqz_update_ctx
[function]
[call site]
02615
mm_prefetch
[function]
[call site]
02616
fqz_update_ctx
[function]
[call site]
02617
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02618
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02619
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02620
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02621
mm_prefetch
[function]
[call site]
02622
fqz_update_ctx
[function]
[call site]
02623
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02624
RC_FinishEncode
[function]
[call site]
02625
RC_ShiftLowCheck
[function]
[call site]
02626
RC_OutSize
[function]
[call site]
02627
fqz_destroy_models
[function]
[call site]
02628
fqz_free_parameters
[function]
[call site]
02629
lzma_mem_deflate
[function]
[call site]
02630
lzma_stream_buffer_bound
[call site]
02631
lzma_easy_buffer_encode
[call site]
02632
rans_compress
[function]
[call site]
02633
rans_compress_O1
[function]
[call site]
02634
rans_compress_O0
[function]
[call site]
02635
hist8
[function]
[call site]
02636
htscodecs_tls_calloc
[function]
[call site]
02637
htscodecs_tls_free
[function]
[call site]
02638
__assert_fail
[call site]
02639
RansEncSymbolInit
[function]
[call site]
02640
__assert_fail
[call site]
02641
__assert_fail
[call site]
02642
RansEncInit
[function]
[call site]
02643
RansEncInit
[function]
[call site]
02644
RansEncInit
[function]
[call site]
02645
RansEncInit
[function]
[call site]
02646
RansEncPutSymbol
[function]
[call site]
02647
__assert_fail
[call site]
02648
RansEncPutSymbol
[function]
[call site]
02649
RansEncPutSymbol
[function]
[call site]
02650
RansEncPutSymbol
[function]
[call site]
02651
RansEncPutSymbol
[function]
[call site]
02652
RansEncPutSymbol
[function]
[call site]
02653
RansEncPutSymbol
[function]
[call site]
02654
RansEncFlush
[function]
[call site]
02655
RansEncFlush
[function]
[call site]
02656
RansEncFlush
[function]
[call site]
02657
RansEncFlush
[function]
[call site]
02658
htscodecs_tls_alloc
[function]
[call site]
02659
hist1_4
[function]
[call site]
02660
htscodecs_tls_calloc
[function]
[call site]
02661
htscodecs_tls_free
[function]
[call site]
02662
RansEncSymbolInit
[function]
[call site]
02663
__assert_fail
[call site]
02664
RansEncInit
[function]
[call site]
02665
RansEncInit
[function]
[call site]
02666
RansEncInit
[function]
[call site]
02667
RansEncInit
[function]
[call site]
02668
RansEncPutSymbol
[function]
[call site]
02669
RansEncPutSymbol4
[function]
[call site]
02670
__assert_fail
[call site]
02671
__assert_fail
[call site]
02672
__assert_fail
[call site]
02673
__assert_fail
[call site]
02674
RansEncPutSymbol
[function]
[call site]
02675
RansEncPutSymbol
[function]
[call site]
02676
RansEncPutSymbol
[function]
[call site]
02677
RansEncPutSymbol
[function]
[call site]
02678
RansEncFlush
[function]
[call site]
02679
RansEncFlush
[function]
[call site]
02680
RansEncFlush
[function]
[call site]
02681
RansEncFlush
[function]
[call site]
02682
htscodecs_tls_free
[function]
[call site]
02683
rans_compress_O0
[function]
[call site]
02684
rans_compress_4x16
[function]
[call site]
02685
rans_compress_to_4x16
[function]
[call site]
02686
rans_compress_bound_4x16
[function]
[call site]
02687
var_put_u32
[function]
[call site]
02688
rans_compress_to_4x16
[function]
[call site]
02689
realloc
[call site]
02690
var_put_u32
[function]
[call site]
02691
var_put_u32
[function]
[call site]
02692
var_put_u32
[function]
[call site]
02693
hts_pack
[function]
[call site]
02694
var_put_u32
[function]
[call site]
02695
hts_rle_encode
[function]
[call site]
02696
rle_find_syms
[function]
[call site]
02697
var_put_u32
[function]
[call site]
02698
var_put_u32
[function]
[call site]
02699
var_put_u32
[function]
[call site]
02700
rans_enc_func
[function]
[call site]
02701
pthread_once
[call site]
02702
htscodecs_tls_cpu_init
[function]
[call site]
02703
strerror
[call site]
02704
fprintf
[call site]
02705
fprintf
[call site]
02706
var_put_u32
[function]
[call site]
02707
var_put_u32
[function]
[call site]
02708
var_put_u32
[function]
[call site]
02709
rans_enc_func
[function]
[call site]
02710
arith_compress_to
[function]
[call site]
02711
arith_compress_bound
[function]
[call site]
02712
var_put_u32
[function]
[call site]
02713
var_put_u32
[function]
[call site]
02714
arith_compress_to
[function]
[call site]
02715
arith_compress_to
[function]
[call site]
02716
var_put_u32
[function]
[call site]
02717
var_put_u32
[function]
[call site]
02718
hts_pack
[function]
[call site]
02719
var_put_u32
[function]
[call site]
02720
BZ2_bzBuffToBuffCompress
[call site]
02721
arith_compress_O0_RLE
[function]
[call site]
02722
arith_compress_bound
[function]
[call site]
02723
SIMPLE_MODEL256_init
[function]
[call site]
02724
htscodecs_tls_alloc
[function]
[call site]
02725
SIMPLE_MODEL258_init
[function]
[call site]
02726
RC_SetOutput
[function]
[call site]
02727
RC_SetOutputEnd
[function]
[call site]
02728
RC_StartEncode
[function]
[call site]
02729
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02730
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02731
SIMPLE_MODEL258_normalize
[function]
[call site]
02732
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02733
RC_FinishEncode
[function]
[call site]
02734
htscodecs_tls_free
[function]
[call site]
02735
RC_OutSize
[function]
[call site]
02736
htscodecs_tls_free
[function]
[call site]
02737
arith_compress_O1_RLE
[function]
[call site]
02738
arith_compress_bound
[function]
[call site]
02739
htscodecs_tls_alloc
[function]
[call site]
02740
SIMPLE_MODEL256_init
[function]
[call site]
02741
htscodecs_tls_alloc
[function]
[call site]
02742
htscodecs_tls_free
[function]
[call site]
02743
SIMPLE_MODEL258_init
[function]
[call site]
02744
RC_SetOutput
[function]
[call site]
02745
RC_SetOutputEnd
[function]
[call site]
02746
RC_StartEncode
[function]
[call site]
02747
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02748
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02749
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02750
RC_FinishEncode
[function]
[call site]
02751
htscodecs_tls_free
[function]
[call site]
02752
htscodecs_tls_free
[function]
[call site]
02753
RC_OutSize
[function]
[call site]
02754
htscodecs_tls_free
[function]
[call site]
02755
htscodecs_tls_free
[function]
[call site]
02756
arith_compress_O1
[function]
[call site]
02757
arith_compress_bound
[function]
[call site]
02758
htscodecs_tls_alloc
[function]
[call site]
02759
SIMPLE_MODEL256_init
[function]
[call site]
02760
RC_SetOutput
[function]
[call site]
02761
RC_SetOutputEnd
[function]
[call site]
02762
RC_StartEncode
[function]
[call site]
02763
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02764
RC_FinishEncode
[function]
[call site]
02765
htscodecs_tls_free
[function]
[call site]
02766
RC_OutSize
[function]
[call site]
02767
htscodecs_tls_free
[function]
[call site]
02768
arith_compress_O0
[function]
[call site]
02769
arith_compress_bound
[function]
[call site]
02770
SIMPLE_MODEL256_init
[function]
[call site]
02771
RC_SetOutput
[function]
[call site]
02772
RC_SetOutputEnd
[function]
[call site]
02773
RC_StartEncode
[function]
[call site]
02774
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02775
RC_FinishEncode
[function]
[call site]
02776
RC_OutSize
[function]
[call site]
02777
tok3_encode_names
[function]
[call site]
02778
create_context
[function]
[call site]
02779
build_trie
[function]
[call site]
02780
calloc
[call site]
02781
pool_create
[function]
[call site]
02782
pool_alloc
[function]
[call site]
02783
new_pool
[function]
[call site]
02784
free_context
[function]
[call site]
02785
free_context
[function]
[call site]
02786
encode_name
[function]
[call site]
02787
search_trie
[function]
[call site]
02788
__ctype_b_loc
[call site]
02789
__ctype_b_loc
[call site]
02790
__ctype_b_loc
[call site]
02791
__ctype_b_loc
[call site]
02792
__ctype_b_loc
[call site]
02793
calloc
[call site]
02794
__ctype_b_loc
[call site]
02795
strlen
[call site]
02796
encode_token_dup
[function]
[call site]
02797
encode_token_int
[function]
[call site]
02798
encode_token_type
[function]
[call site]
02799
descriptor_grow
[function]
[call site]
02800
realloc
[call site]
02801
descriptor_grow
[function]
[call site]
02802
encode_token_diff
[function]
[call site]
02803
encode_token_int
[function]
[call site]
02804
encode_token_char
[function]
[call site]
02805
encode_token_type
[function]
[call site]
02806
descriptor_grow
[function]
[call site]
02807
memcmp
[call site]
02808
encode_token_match
[function]
[call site]
02809
encode_token_type
[function]
[call site]
02810
encode_token_alpha
[function]
[call site]
02811
encode_token_type
[function]
[call site]
02812
descriptor_grow
[function]
[call site]
02813
encode_token_alpha
[function]
[call site]
02814
__ctype_b_loc
[call site]
02815
__ctype_b_loc
[call site]
02816
__ctype_b_loc
[call site]
02817
memcmp
[call site]
02818
encode_token_match
[function]
[call site]
02819
encode_token_alpha
[function]
[call site]
02820
encode_token_alpha
[function]
[call site]
02821
__ctype_b_loc
[call site]
02822
encode_token_match
[function]
[call site]
02823
encode_token_int1
[function]
[call site]
02824
encode_token_type
[function]
[call site]
02825
descriptor_grow
[function]
[call site]
02826
encode_token_int1_
[function]
[call site]
02827
descriptor_grow
[function]
[call site]
02828
encode_token_int
[function]
[call site]
02829
encode_token_int1_
[function]
[call site]
02830
encode_token_int
[function]
[call site]
02831
__ctype_b_loc
[call site]
02832
__ctype_b_loc
[call site]
02833
encode_token_match
[function]
[call site]
02834
encode_token_int1
[function]
[call site]
02835
encode_token_int
[function]
[call site]
02836
encode_token_int
[function]
[call site]
02837
encode_token_match
[function]
[call site]
02838
encode_token_char
[function]
[call site]
02839
encode_token_char
[function]
[call site]
02840
encode_token_end
[function]
[call site]
02841
encode_token_type
[function]
[call site]
02842
realloc
[call site]
02843
free_context
[function]
[call site]
02844
arith_compress_bound
[function]
[call site]
02845
free_context
[function]
[call site]
02846
compress
[function]
[call site]
02847
arith_encode
[function]
[call site]
02848
arith_compress_to
[function]
[call site]
02849
var_put_u32
[function]
[call site]
02850
rans_encode
[function]
[call site]
02851
rans_compress_to_4x16
[function]
[call site]
02852
var_put_u32
[function]
[call site]
02853
free_context
[function]
[call site]
02854
memcmp
[call site]
02855
free_context
[function]
[call site]
02856
free_context
[function]
[call site]
02857
pthread_mutex_lock
[call site]
02858
pthread_mutex_unlock
[call site]
02859
pthread_mutex_unlock
[call site]
02860
cram_compress_by_method
[function]
[call site]
02861
cram_block_method2str
[function]
[call site]
02862
hts_log
[function]
[call site]
02863
pthread_mutex_lock
[call site]
02864
pthread_mutex_unlock
[call site]
02865
cram_compress_block3
[function]
[call site]
02866
cram_compress_by_method
[function]
[call site]
02867
hts_log
[function]
[call site]
02868
cram_block_method2str
[function]
[call site]
02869
hts_log
[function]
[call site]
02870
pthread_mutex_lock
[call site]
02871
pthread_mutex_unlock
[call site]
02872
cram_compress_block2
[function]
[call site]
02873
cram_compress_block2
[function]
[call site]
02874
cram_compress_block2
[function]
[call site]
02875
cram_compress_block2
[function]
[call site]
02876
cram_compress_block2
[function]
[call site]
02877
cram_compress_block2
[function]
[call site]
02878
cram_compress_block2
[function]
[call site]
02879
cram_compress_block2
[function]
[call site]
02880
cram_compress_block2
[function]
[call site]
02881
cram_compress_block2
[function]
[call site]
02882
cram_compress_block2
[function]
[call site]
02883
cram_compress_block2
[function]
[call site]
02884
cram_compress_block2
[function]
[call site]
02885
cram_compress_block2
[function]
[call site]
02886
cram_compress_block2
[function]
[call site]
02887
realloc
[call site]
02888
cram_free_block
[function]
[call site]
02889
cram_encode_slice_header
[function]
[call site]
02890
cram_new_block
[function]
[call site]
02891
cram_free_block
[function]
[call site]
02892
cram_free_block
[function]
[call site]
02893
__assert_fail
[call site]
02894
cram_encode_compression_header
[function]
[call site]
02895
cram_new_block
[function]
[call site]
02896
cram_new_block
[function]
[call site]
02897
itf8_put_blk
[function]
[call site]
02898
itf8_put
[function]
[call site]
02899
block_append
[function]
[call site]
02900
itf8_put_blk
[function]
[call site]
02901
itf8_put_blk
[function]
[call site]
02902
itf8_put_blk
[function]
[call site]
02903
itf8_put_blk
[function]
[call site]
02904
itf8_put_blk
[function]
[call site]
02905
kh_destroy_map
[function]
[call site]
02906
kh_init_map
[function]
[call site]
02907
calloc
[call site]
02908
kh_put_map
[function]
[call site]
02909
kh_resize_map
[function]
[call site]
02910
realloc
[call site]
02911
__ac_FNV1a_hash_string
[function]
[call site]
02912
strcmp
[call site]
02913
kh_put_map
[function]
[call site]
02914
kh_put_map
[function]
[call site]
02915
kh_put_map
[function]
[call site]
02916
kh_put_map
[function]
[call site]
02917
kh_put_map
[function]
[call site]
02918
kh_put_map
[function]
[call site]
02919
kh_put_map
[function]
[call site]
02920
kh_put_map
[function]
[call site]
02921
block_append
[function]
[call site]
02922
block_append_char
[function]
[call site]
02923
sub_idx
[function]
[call site]
02924
sub_idx
[function]
[call site]
02925
sub_idx
[function]
[call site]
02926
sub_idx
[function]
[call site]
02927
sub_idx
[function]
[call site]
02928
sub_idx
[function]
[call site]
02929
sub_idx
[function]
[call site]
02930
sub_idx
[function]
[call site]
02931
sub_idx
[function]
[call site]
02932
sub_idx
[function]
[call site]
02933
sub_idx
[function]
[call site]
02934
sub_idx
[function]
[call site]
02935
sub_idx
[function]
[call site]
02936
sub_idx
[function]
[call site]
02937
sub_idx
[function]
[call site]
02938
sub_idx
[function]
[call site]
02939
sub_idx
[function]
[call site]
02940
sub_idx
[function]
[call site]
02941
sub_idx
[function]
[call site]
02942
sub_idx
[function]
[call site]
02943
block_append
[function]
[call site]
02944
block_append
[function]
[call site]
02945
hts_log
[function]
[call site]
02946
block_append
[function]
[call site]
02947
block_append
[function]
[call site]
02948
block_append
[function]
[call site]
02949
hts_log
[function]
[call site]
02950
cram_free_block
[function]
[call site]
02951
cram_ref_decr
[function]
[call site]
02952
cram_ref_decr
[function]
[call site]
02953
cram_flush_container2
[function]
[call site]
02954
htell
[function]
[call site]
02955
cram_write_container
[function]
[call site]
02956
itf8_put
[function]
[call site]
02957
crc32
[call site]
02958
hwrite
[function]
[call site]
02959
htell
[function]
[call site]
02960
cram_write_block
[function]
[call site]
02961
__assert_fail
[call site]
02962
hputc
[function]
[call site]
02963
hputc2
[function]
[call site]
02964
flush_buffer
[function]
[call site]
02965
hputc
[function]
[call site]
02966
hwrite
[function]
[call site]
02967
hwrite
[function]
[call site]
02968
hwrite
[function]
[call site]
02969
__assert_fail
[call site]
02970
crc32
[call site]
02971
crc32
[call site]
02972
crc32
[call site]
02973
int32_encode
[function]
[call site]
02974
hwrite
[function]
[call site]
02975
htell
[function]
[call site]
02976
cram_write_block
[function]
[call site]
02977
cram_write_block
[function]
[call site]
02978
htell
[function]
[call site]
02979
cram_index_slice
[function]
[call site]
02980
hts_log
[function]
[call site]
02981
cram_index_build_multiref
[function]
[call site]
02982
cram_decode_slice
[function]
[call site]
02983
cram_dependent_data_series
[function]
[call site]
02984
cram_uncompress_block
[function]
[call site]
02985
cram_uncompress_block
[function]
[call site]
02986
calloc
[call site]
02987
cram_codec_to_id
[function]
[call site]
02988
cram_codec_to_id
[function]
[call site]
02989
cram_codec_to_id
[function]
[call site]
02990
hts_log
[function]
[call site]
02991
cram_uncompress_block
[function]
[call site]
02992
cram_codec_to_id
[function]
[call site]
02993
cram_uncompress_block
[function]
[call site]
02994
cram_codec_to_id
[function]
[call site]
02995
cram_codec_to_id
[function]
[call site]
02996
block_resize_exact
[function]
[call site]
02997
block_resize_exact
[function]
[call site]
02998
block_resize_exact
[function]
[call site]
02999
strcmp
[call site]
03000
hts_log
[function]
[call site]
03001
cram_get_block_by_id
[function]
[call site]
03002
cram_uncompress_block
[function]
[call site]
03003
hts_log
[function]
[call site]
03004
cram_get_ref
[function]
[call site]
03005
hts_log
[function]
[call site]
03006
pthread_mutex_lock
[call site]
03007
pthread_mutex_lock
[call site]
03008
pthread_mutex_unlock
[call site]
03009
pthread_mutex_unlock
[call site]
03010
hts_log
[function]
[call site]
03011
memcmp
[call site]
03012
hts_log
[function]
[call site]
03013
hts_log
[function]
[call site]
03014
hts_md5_init
[function]
[call site]
03015
hts_md5_update
[function]
[call site]
03016
hts_md5_final
[function]
[call site]
03017
hts_md5_destroy
[function]
[call site]
03018
cram_get_block_by_id
[function]
[call site]
03019
hts_md5_init
[function]
[call site]
03020
hts_md5_update
[function]
[call site]
03021
hts_md5_final
[function]
[call site]
03022
hts_md5_destroy
[function]
[call site]
03023
memcmp
[call site]
03024
sam_hdr_tid2name
[function]
[call site]
03025
hts_log
[function]
[call site]
03026
md5_print
[function]
[call site]
03027
hts_log
[function]
[call site]
03028
md5_print
[function]
[call site]
03029
hts_log
[function]
[call site]
03030
sam_hdr_find_tag_id
[function]
[call site]
03031
sam_hdr_fill_hrecs
[function]
[call site]
03032
sam_hrecs_find_type_id
[function]
[call site]
03033
sam_hrecs_find_key
[function]
[call site]
03034
kputsn
[function]
[call site]
03035
hts_log
[function]
[call site]
03036
ks_free
[function]
[call site]
03037
ks_initialize
[function]
[call site]
03038
pthread_mutex_lock
[call site]
03039
pthread_mutex_lock
[call site]
03040
calloc
[call site]
03041
pthread_mutex_unlock
[call site]
03042
pthread_mutex_unlock
[call site]
03043
hts_log
[function]
[call site]
03044
pthread_mutex_lock
[call site]
03045
pthread_mutex_unlock
[call site]
03046
cram_get_ref
[function]
[call site]
03047
pthread_mutex_lock
[call site]
03048
pthread_mutex_unlock
[call site]
03049
pthread_mutex_lock
[call site]
03050
pthread_mutex_unlock
[call site]
03051
cram_ref_decr
[function]
[call site]
03052
pthread_mutex_lock
[call site]
03053
pthread_mutex_lock
[call site]
03054
pthread_mutex_unlock
[call site]
03055
pthread_mutex_unlock
[call site]
03056
hts_log
[function]
[call site]
03057
hts_log
[function]
[call site]
03058
pthread_mutex_lock
[call site]
03059
pthread_mutex_unlock
[call site]
03060
hts_log
[function]
[call site]
03061
cram_decode_tlen
[function]
[call site]
03062
cram_decode_tlen
[function]
[call site]
03063
cram_decode_tlen
[function]
[call site]
03064
cram_decode_aux_1_0
[function]
[call site]
03065
map_find
[function]
[call site]
03066
block_append
[function]
[call site]
03067
cram_decode_aux
[function]
[call site]
03068
strlen
[call site]
03069
sam_hdr_line_name
[function]
[call site]
03070
sam_hdr_fill_hrecs
[function]
[call site]
03071
hts_log
[function]
[call site]
03072
hts_log
[function]
[call site]
03073
hts_log
[function]
[call site]
03074
hts_log
[function]
[call site]
03075
strlen
[call site]
03076
block_append
[function]
[call site]
03077
block_append
[function]
[call site]
03078
block_append_char
[function]
[call site]
03079
block_append
[function]
[call site]
03080
map_find
[function]
[call site]
03081
block_append
[function]
[call site]
03082
aux_ele_size
[function]
[call site]
03083
hts_log
[function]
[call site]
03084
block_resize
[function]
[call site]
03085
block_resize
[function]
[call site]
03086
hts_log
[function]
[call site]
03087
cram_decode_seq
[function]
[call site]
03088
block_append
[function]
[call site]
03089
realloc
[call site]
03090
hts_log
[function]
[call site]
03091
hts_log
[function]
[call site]
03092
hts_log
[function]
[call site]
03093
memchr
[call site]
03094
add_md_char
[function]
[call site]
03095
block_append_uint
[function]
[call site]
03096
block_grow
[function]
[call site]
03097
append_uint32
[function]
[call site]
03098
block_append_char
[function]
[call site]
03099
block_append_uint
[function]
[call site]
03100
add_md_char
[function]
[call site]
03101
block_append_uint
[function]
[call site]
03102
block_append_char
[function]
[call site]
03103
block_append
[function]
[call site]
03104
block_append_char
[function]
[call site]
03105
block_append
[function]
[call site]
03106
block_append_uint
[function]
[call site]
03107
block_append_uint
[function]
[call site]
03108
block_append_uint
[function]
[call site]
03109
block_append_char
[function]
[call site]
03110
block_append_uint
[function]
[call site]
03111
block_append_char
[function]
[call site]
03112
hts_log
[function]
[call site]
03113
hts_log
[function]
[call site]
03114
memchr
[call site]
03115
add_md_char
[function]
[call site]
03116
realloc
[call site]
03117
block_append_uint
[function]
[call site]
03118
realloc
[call site]
03119
block_append_char
[function]
[call site]
03120
block_append
[function]
[call site]
03121
pthread_mutex_lock
[call site]
03122
cram_ref_decr
[function]
[call site]
03123
cram_ref_decr
[function]
[call site]
03124
pthread_mutex_unlock
[call site]
03125
cram_decode_slice_xref
[function]
[call site]
03126
hts_log
[function]
[call site]
03127
cram_free_block
[function]
[call site]
03128
block_resize_exact
[function]
[call site]
03129
block_resize_exact
[function]
[call site]
03130
block_resize_exact
[function]
[call site]
03131
block_resize_exact
[function]
[call site]
03132
pthread_mutex_lock
[call site]
03133
cram_ref_decr
[function]
[call site]
03134
pthread_mutex_unlock
[call site]
03135
hts_log
[function]
[call site]
03136
snprintf
[call site]
03137
strlen
[call site]
03138
bgzf_write
[function]
[call site]
03139
hwrite
[function]
[call site]
03140
__assert_fail
[call site]
03141
lazy_flush
[function]
[call site]
03142
mt_queue
[function]
[call site]
03143
bgzf_flush
[function]
[call site]
03144
snprintf
[call site]
03145
strlen
[call site]
03146
bgzf_write
[function]
[call site]
03147
snprintf
[call site]
03148
strlen
[call site]
03149
bgzf_write
[function]
[call site]
03150
__errno_location
[call site]
03151
hts_tpool_dispatch2
[function]
[call site]
03152
hts_tpool_dispatch3
[function]
[call site]
03153
cram_flush_thread
[function]
[call site]
03154
cram_encode_container
[function]
[call site]
03155
hts_log
[function]
[call site]
03156
__errno_location
[call site]
03157
cram_flush_result
[function]
[call site]
03158
hts_tpool_next_result
[function]
[call site]
03159
pthread_mutex_lock
[call site]
03160
hts_tpool_next_result_locked
[function]
[call site]
03161
pthread_mutex_unlock
[call site]
03162
hts_tpool_result_data
[function]
[call site]
03163
hts_tpool_delete_result
[function]
[call site]
03164
cram_flush_container2
[function]
[call site]
03165
cram_free_slice
[function]
[call site]
03166
cram_free_slice
[function]
[call site]
03167
cram_free_container
[function]
[call site]
03168
hts_tpool_delete_result
[function]
[call site]
03169
cram_free_container
[function]
[call site]
03170
hts_usleep
[function]
[call site]
03171
cram_drain_rqueue
[function]
[call site]
03172
hts_tpool_process_flush
[function]
[call site]
03173
cram_flush_result
[function]
[call site]
03174
hts_tpool_process_destroy
[function]
[call site]
03175
pthread_mutex_destroy
[call site]
03176
pthread_mutex_destroy
[call site]
03177
pthread_mutex_destroy
[call site]
03178
pthread_mutex_destroy
[call site]
03179
cram_write_eof_block
[function]
[call site]
03180
cram_encode_compression_header
[function]
[call site]
03181
cram_write_container
[function]
[call site]
03182
cram_write_block
[function]
[call site]
03183
cram_close
[function]
[call site]
03184
free_bam_list
[function]
[call site]
03185
hclose
[function]
[call site]
03186
cram_free_file_def
[function]
[call site]
03187
sam_hdr_destroy
[function]
[call site]
03188
cram_free_container
[function]
[call site]
03189
cram_free_container
[function]
[call site]
03190
refs_free
[function]
[call site]
03191
kh_destroy_m_metrics
[function]
[call site]
03192
cram_index_free
[function]
[call site]
03193
cram_index_free_recurse
[function]
[call site]
03194
cram_index_free_recurse
[function]
[call site]
03195
hts_tpool_destroy
[function]
[call site]
03196
bgzf_close
[function]
[call site]
03197
cram_free_block
[function]
[call site]
03198
kh_destroy_map
[function]
[call site]
03199
cram_free_block
[function]
[call site]
03200
sam_state_destroy
[function]
[call site]
03201
fastq_state_destroy
[function]
[call site]
03202
kh_destroy_tag
[function]
[call site]
03203
ks_free
[function]
[call site]
03204
ks_initialize
[function]
[call site]
03205
ks_free
[function]
[call site]
03206
ks_free
[function]
[call site]
03207
regfree
[call site]
03208
bgzf_close
[function]
[call site]
03209
hclose
[function]
[call site]
03210
hts_idx_close_otf_fp
[function]
[call site]
03211
need_idx_ugly_delay_hack
[function]
[call site]
03212
idx_write_uint64
[function]
[call site]
03213
ed_is_big
[function]
[call site]
03214
ed_swap_8
[function]
[call site]
03215
bgzf_write
[function]
[call site]
03216
bgzf_close
[function]
[call site]
03217
__errno_location
[call site]
03218
sam_hdr_destroy
[function]
[call site]
03219
hts_idx_destroy
[function]
[call site]
03220
cram_index_free
[function]
[call site]
03221
kh_destroy_bin
[function]
[call site]
03222
hts_filter_free
[function]
[call site]
03223
__errno_location
[call site]
03224
view_sam
[function]
[call site]
03225
abort
[call site]
03226
hopen
[function]
[call site]
03227
hts_hopen
[function]
[call site]
03228
hclose
[function]
[call site]
03229
abort
[call site]
03230
hts_open
[function]
[call site]
03231
hts_open_format
[function]
[call site]
03232
strncpy
[call site]
03233
strchr
[call site]
03234
strchr
[call site]
03235
strchr
[call site]
03236
strstr
[call site]
03237
strdup
[call site]
03238
hopen
[function]
[call site]
03239
hts_hopen
[function]
[call site]
03240
hts_opt_apply
[function]
[call site]
03241
__errno_location
[call site]
03242
__errno_location
[call site]
03243
__errno_location
[call site]
03244
__errno_location
[call site]
03245
strerror
[call site]
03246
hts_log
[function]
[call site]
03247
hclose_abruptly
[function]
[call site]
03248
abort
[call site]
03249
sam_hdr_read
[function]
[call site]
03250
__errno_location
[call site]
03251
bam_hdr_read
[function]
[call site]
03252
bgzf_check_EOF
[function]
[call site]
03253
pthread_mutex_lock
[call site]
03254
pthread_cond_signal
[call site]
03255
hts_tpool_wake_dispatch
[function]
[call site]
03256
pthread_mutex_unlock
[call site]
03257
pthread_cond_wait
[call site]
03258
pthread_cond_signal
[call site]
03259
abort
[call site]
03260
pthread_mutex_unlock
[call site]
03261
bgzf_check_EOF_common
[function]
[call site]
03262
htell
[function]
[call site]
03263
hseek
[function]
[call site]
03264
__errno_location
[call site]
03265
hclearerr
[function]
[call site]
03266
__errno_location
[call site]
03267
hclearerr
[function]
[call site]
03268
hread
[function]
[call site]
03269
hseek
[function]
[call site]
03270
memcmp
[call site]
03271
perror
[call site]
03272
hts_log
[function]
[call site]
03273
bgzf_read
[function]
[call site]
03274
memcmp
[call site]
03275
hts_log
[function]
[call site]
03276
sam_hdr_init
[function]
[call site]
03277
bgzf_read
[function]
[call site]
03278
le_to_u32
[function]
[call site]
03279
bgzf_read
[function]
[call site]
03280
bgzf_read
[function]
[call site]
03281
ed_swap_4p
[function]
[call site]
03282
ed_swap_4
[function]
[call site]
03283
calloc
[call site]
03284
calloc
[call site]
03285
bgzf_read
[function]
[call site]
03286
ed_swap_4p
[function]
[call site]
03287
bgzf_read
[function]
[call site]
03288
realloc
[call site]
03289
bgzf_read
[function]
[call site]
03290
ed_swap_4p
[function]
[call site]
03291
hts_log
[function]
[call site]
03292
hts_log
[function]
[call site]
03293
hts_log
[function]
[call site]
03294
sam_hdr_destroy
[function]
[call site]
03295
sam_hdr_sanitise
[function]
[call site]
03296
hts_log
[function]
[call site]
03297
sam_hdr_destroy
[function]
[call site]
03298
hts_log
[function]
[call site]
03299
hts_log
[function]
[call site]
03300
hts_log
[function]
[call site]
03301
sam_hdr_destroy
[function]
[call site]
03302
realloc
[call site]
03303
sam_hdr_destroy
[function]
[call site]
03304
sam_hdr_dup
[function]
[call site]
03305
sam_hdr_init
[function]
[call site]
03306
calloc
[call site]
03307
calloc
[call site]
03308
strdup
[call site]
03309
sam_hdr_dup_sdict
[function]
[call site]
03310
kh_init_s2i
[function]
[call site]
03311
kh_get_s2i
[function]
[call site]
03312
kh_put_s2i
[function]
[call site]
03313
kh_destroy_s2i
[function]
[call site]
03314
sam_hrecs_rebuild_text
[function]
[call site]
03315
kputsn
[function]
[call site]
03316
sam_hrecs_rebuild_lines
[function]
[call site]
03317
kputsn
[function]
[call site]
03318
build_header_line
[function]
[call site]
03319
kputc_
[function]
[call site]
03320
kputsn
[function]
[call site]
03321
kputc_
[function]
[call site]
03322
kputsn
[function]
[call site]
03323
kputc
[function]
[call site]
03324
ks_release
[function]
[call site]
03325
ks_release
[function]
[call site]
03326
sam_hdr_update_target_arrays
[function]
[call site]
03327
sam_hdr_destroy
[function]
[call site]
03328
sam_hdr_sanitise
[function]
[call site]
03329
sam_hdr_create
[function]
[call site]
03330
sam_hdr_init
[function]
[call site]
03331
sam_hdr_build_from_sam_file
[function]
[call site]
03332
sam_hrecs_new
[function]
[call site]
03333
hts_getline
[function]
[call site]
03334
hts_log
[function]
[call site]
03335
abort
[call site]
03336
kgetline2
[function]
[call site]
03337
ks_resize
[function]
[call site]
03338
hgetln_wrapper
[function]
[call site]
03339
hgetln
[function]
[call site]
03340
herrno
[function]
[call site]
03341
__errno_location
[call site]
03342
bgzf_getline
[function]
[call site]
03343
bgzf_read_block
[function]
[call site]
03344
memchr
[call site]
03345
ks_expand
[function]
[call site]
03346
bgzf_htell
[function]
[call site]
03347
abort
[call site]
03348
isalpha_c
[function]
[call site]
03349
sam_hrecs_error
[function]
[call site]
03350
strncmp
[call site]
03351
kputc
[function]
[call site]
03352
valid_sam_header_type
[function]
[call site]
03353
hts_log
[function]
[call site]
03354
warn_if_known_stderr
[function]
[call site]
03355
sam_hrecs_parse_single_line
[function]
[call site]
03356
TYPEKEY
[function]
[call site]
03357
kputsn
[function]
[call site]
03358
kputc
[function]
[call site]
03359
bgzf_peek
[function]
[call site]
03360
bgzf_read_block
[function]
[call site]
03361
hts_log
[function]
[call site]
03362
hpeek
[function]
[call site]
03363
strstr
[call site]
03364
hopen
[function]
[call site]
03365
khgetline
[function]
[call site]
03366
kgetline
[function]
[call site]
03367
ks_resize
[function]
[call site]
03368
hgets_wrapper
[function]
[call site]
03369
hgets
[function]
[call site]
03370
strchr
[call site]
03371
strtoll
[call site]
03372
kputs
[function]
[call site]
03373
kputsn
[function]
[call site]
03374
kputs
[function]
[call site]
03375
kputll
[function]
[call site]
03376
kputc
[function]
[call site]
03377
sam_hrecs_parse_single_line
[function]
[call site]
03378
ks_free
[function]
[call site]
03379
hclose
[function]
[call site]
03380
hts_log
[function]
[call site]
03381
kh_grow_to_fit_m_s2i
[function]
[call site]
03382
realloc
[call site]
03383
sam_hrecs_update_hashes
[function]
[call site]
03384
kputsn
[function]
[call site]
03385
ks_release
[function]
[call site]
03386
sam_hdr_update_target_arrays
[function]
[call site]
03387
ks_free
[function]
[call site]
03388
sam_hdr_destroy
[function]
[call site]
03389
sam_hdr_destroy
[function]
[call site]
03390
sam_hdr_sanitise
[function]
[call site]
03391
sam_hdr_init
[function]
[call site]
03392
__errno_location
[call site]
03393
__errno_location
[call site]
03394
sam_hdr_incr_ref
[function]
[call site]
03395
hts_close_or_abort
[function]
[call site]
03396
hts_close
[function]
[call site]
03397
abort
[call site]
03398
hts_close
[function]
[call site]
03399
hts_close
[function]
[call site]
03400
sam_hdr_count_lines
[function]
[call site]
03401
sam_hdr_fill_hrecs
[function]
[call site]
03402
sam_hrecs_find_type_id
[function]
[call site]
03403
sam_hdr_write
[function]
[call site]
03404
__errno_location
[call site]
03405
bam_hdr_write
[function]
[call site]
03406
sam_hrecs_rebuild_text
[function]
[call site]
03407
hts_log
[function]
[call site]
03408
hts_log
[function]
[call site]
03409
hts_log
[function]
[call site]
03410
hts_log
[function]
[call site]
03411
hts_log
[function]
[call site]
03412
hts_log
[function]
[call site]
03413
bgzf_write
[function]
[call site]
03414
ed_swap_4
[function]
[call site]
03415
bgzf_write
[function]
[call site]
03416
bgzf_write
[function]
[call site]
03417
ed_swap_4
[function]
[call site]
03418
bgzf_write
[function]
[call site]
03419
bgzf_write
[function]
[call site]
03420
bgzf_write
[function]
[call site]
03421
bgzf_write
[function]
[call site]
03422
strlen
[call site]
03423
ed_swap_4
[function]
[call site]
03424
bgzf_write
[function]
[call site]
03425
bgzf_write
[function]
[call site]
03426
bgzf_write
[function]
[call site]
03427
ed_swap_4
[function]
[call site]
03428
bgzf_write
[function]
[call site]
03429
bgzf_write
[function]
[call site]
03430
bgzf_flush
[function]
[call site]
03431
cram_set_header2
[function]
[call site]
03432
sam_hdr_destroy
[function]
[call site]
03433
sam_hdr_dup
[function]
[call site]
03434
refs_from_header
[function]
[call site]
03435
cram_load_reference
[function]
[call site]
03436
cram_write_SAM_hdr
[function]
[call site]
03437
cram_write_file_def
[function]
[call site]
03438
hwrite
[function]
[call site]
03439
sam_hrecs_find_rg
[function]
[call site]
03440
sam_hdr_add_line
[function]
[call site]
03441
sam_hdr_fill_hrecs
[function]
[call site]
03442
sam_hrecs_vadd
[function]
[call site]
03443
rebuild_target_arrays
[function]
[call site]
03444
redact_header_text
[function]
[call site]
03445
refs_from_header
[function]
[call site]
03446
refs2id
[function]
[call site]
03447
sam_hrecs_find_type_id
[function]
[call site]
03448
sam_hrecs_find_key
[function]
[call site]
03449
cram_get_ref
[function]
[call site]
03450
hts_log
[function]
[call site]
03451
hts_log
[function]
[call site]
03452
hts_log
[function]
[call site]
03453
pthread_mutex_lock
[call site]
03454
pthread_mutex_unlock
[call site]
03455
hts_md5_init
[function]
[call site]
03456
hts_md5_update
[function]
[call site]
03457
hts_md5_final
[function]
[call site]
03458
hts_md5_destroy
[function]
[call site]
03459
cram_ref_decr
[function]
[call site]
03460
hts_md5_hex
[function]
[call site]
03461
sam_hdr_update_line
[function]
[call site]
03462
sam_hdr_fill_hrecs
[function]
[call site]
03463
sam_hrecs_find_type_id
[function]
[call site]
03464
check_for_name_update
[function]
[call site]
03465
TYPEKEY
[function]
[call site]
03466
TYPEKEY
[function]
[call site]
03467
TYPEKEY
[function]
[call site]
03468
sam_hrecs_find_key
[function]
[call site]
03469
__assert_fail
[call site]
03470
strcmp
[call site]
03471
strcmp
[call site]
03472
kh_get_m_s2i
[function]
[call site]
03473
hts_log
[function]
[call site]
03474
TYPEKEY
[function]
[call site]
03475
hts_log
[function]
[call site]
03476
sam_hrecs_vupdate
[function]
[call site]
03477
kh_get_m_s2i
[function]
[call site]
03478
sam_hrecs_find_key
[function]
[call site]
03479
__assert_fail
[call site]
03480
__assert_fail
[call site]
03481
__assert_fail
[call site]
03482
kh_del_m_s2i
[function]
[call site]
03483
kh_put_m_s2i
[function]
[call site]
03484
hts_log
[function]
[call site]
03485
TYPEKEY
[function]
[call site]
03486
sam_hrecs_update_hashes
[function]
[call site]
03487
rebuild_target_arrays
[function]
[call site]
03488
redact_header_text
[function]
[call site]
03489
full_path
[function]
[call site]
03490
strlen
[call site]
03491
hisremote
[function]
[call site]
03492
hts_log
[function]
[call site]
03493
strncpy
[call site]
03494
toupper_c
[function]
[call site]
03495
strncpy
[call site]
03496
getcwd
[call site]
03497
strlen
[call site]
03498
strncpy
[call site]
03499
snprintf
[call site]
03500
sam_hdr_update_line
[function]
[call site]
03501
sam_hdr_length
[function]
[call site]
03502
sam_hdr_rebuild
[function]
[call site]
03503
rebuild_target_arrays
[function]
[call site]
03504
hts_log
[function]
[call site]
03505
sam_hdr_link_pg
[function]
[call site]
03506
sam_hdr_fill_hrecs
[function]
[call site]
03507
realloc
[call site]
03508
calloc
[call site]
03509
__assert_fail
[call site]
03510
kh_get_m_s2i
[function]
[call site]
03511
hts_log
[function]
[call site]
03512
hts_log
[function]
[call site]
03513
redact_header_text
[function]
[call site]
03514
hts_log
[function]
[call site]
03515
sam_hrecs_rebuild_text
[function]
[call site]
03516
ks_free
[function]
[call site]
03517
hts_log
[function]
[call site]
03518
ks_len
[function]
[call site]
03519
ks_release
[function]
[call site]
03520
hts_log
[function]
[call site]
03521
int32_encode
[function]
[call site]
03522
sam_hdr_str
[function]
[call site]
03523
sam_hdr_rebuild
[function]
[call site]
03524
hwrite
[function]
[call site]
03525
cram_new_block
[function]
[call site]
03526
cram_new_container
[function]
[call site]
03527
calloc
[call site]
03528
calloc
[call site]
03529
cram_new_compression_header
[function]
[call site]
03530
calloc
[call site]
03531
cram_new_block
[function]
[call site]
03532
kh_init_m_s2i
[function]
[call site]
03533
cram_free_block
[function]
[call site]
03534
string_pool_create
[function]
[call site]
03535
kh_destroy_m_s2i
[function]
[call site]
03536
cram_free_block
[function]
[call site]
03537
cram_stats_create
[function]
[call site]
03538
calloc
[call site]
03539
kh_init_m_tagmap
[function]
[call site]
03540
calloc
[call site]
03541
cram_free_block
[function]
[call site]
03542
cram_free_container
[function]
[call site]
03543
int32_put_blk
[function]
[call site]
03544
block_append
[function]
[call site]
03545
sam_hdr_str
[function]
[call site]
03546
block_append
[function]
[call site]
03547
cram_compress_block
[function]
[call site]
03548
cram_compress_block2
[function]
[call site]
03549
cram_free_block
[function]
[call site]
03550
cram_free_container
[function]
[call site]
03551
calloc
[call site]
03552
cram_free_block
[function]
[call site]
03553
cram_free_container
[function]
[call site]
03554
block_append
[function]
[call site]
03555
cram_write_container
[function]
[call site]
03556
cram_free_block
[function]
[call site]
03557
cram_free_container
[function]
[call site]
03558
cram_write_block
[function]
[call site]
03559
cram_free_block
[function]
[call site]
03560
cram_free_container
[function]
[call site]
03561
block_resize
[function]
[call site]
03562
cram_write_block
[function]
[call site]
03563
cram_free_block
[function]
[call site]
03564
cram_free_container
[function]
[call site]
03565
cram_free_block
[function]
[call site]
03566
cram_free_container
[function]
[call site]
03567
hflush
[function]
[call site]
03568
sam_hrecs_rebuild_text
[function]
[call site]
03569
strstr
[call site]
03570
bgzf_write
[function]
[call site]
03571
hwrite
[function]
[call site]
03572
kputsn
[function]
[call site]
03573
kputs
[function]
[call site]
03574
kputsn
[function]
[call site]
03575
kputw
[function]
[call site]
03576
kputc
[function]
[call site]
03577
bgzf_write
[function]
[call site]
03578
hwrite
[function]
[call site]
03579
bgzf_flush
[function]
[call site]
03580
hflush
[function]
[call site]
03581
__errno_location
[call site]
03582
sam_hdr_dup
[function]
[call site]
03583
sam_hdr_destroy
[function]
[call site]
03584
bam_init1
[function]
[call site]
03585
calloc
[call site]
03586
sam_read1
[function]
[call site]
03587
sam_read1_bam
[function]
[call site]
03588
bam_read1
[function]
[call site]
03589
bgzf_read_small
[function]
[call site]
03590
bgzf_read
[function]
[call site]
03591
ed_swap_4p
[function]
[call site]
03592
bgzf_read
[function]
[call site]
03593
le_to_u32
[function]
[call site]
03594
le_to_i32
[function]
[call site]
03595
le_to_u32
[function]
[call site]
03596
le_to_u32
[function]
[call site]
03597
le_to_u32
[function]
[call site]
03598
le_to_i32
[function]
[call site]
03599
le_to_i32
[function]
[call site]
03600
realloc_bam_data
[function]
[call site]
03601
sam_realloc_bam_data
[function]
[call site]
03602
__errno_location
[call site]
03603
__errno_location
[call site]
03604
bam_get_mempolicy
[function]
[call site]
03605
realloc
[call site]
03606
bam_get_mempolicy
[function]
[call site]
03607
bam_set_mempolicy
[function]
[call site]
03608
bgzf_read_small
[function]
[call site]
03609
fixup_missing_qname_nul
[function]
[call site]
03610
realloc_bam_data
[function]
[call site]
03611
bgzf_read_small
[function]
[call site]
03612
swap_data
[function]
[call site]
03613
ed_swap_4p
[function]
[call site]
03614
bam_tag2cigar
[function]
[call site]
03615
bam_aux_get
[function]
[call site]
03616
__errno_location
[call site]
03617
__errno_location
[call site]
03618
__errno_location
[call site]
03619
le_to_u32
[function]
[call site]
03620
possibly_expand_bam_data
[function]
[call site]
03621
__errno_location
[call site]
03622
sam_realloc_bam_data
[function]
[call site]
03623
bam_endpos
[function]
[call site]
03624
bam_cigar2rlen
[function]
[call site]
03625
hts_reg2bin
[function]
[call site]
03626
hts_log
[function]
[call site]
03627
bam_cigar2rqlens
[function]
[call site]
03628
hts_reg2bin
[function]
[call site]
03629
hts_log
[function]
[call site]
03630
__errno_location
[call site]
03631
sam_read1_cram
[function]
[call site]
03632
cram_get_bam_seq
[function]
[call site]
03633
cram_get_seq
[function]
[call site]
03634
cram_next_slice
[function]
[call site]
03635
cram_first_slice
[function]
[call site]
03636
cram_free_container
[function]
[call site]
03637
cram_read_container
[function]
[call site]
03638
cram_seek
[function]
[call site]
03639
cram_free_container
[function]
[call site]
03640
cram_read_container
[function]
[call site]
03641
cram_read_block
[function]
[call site]
03642
cram_decode_compression_header
[function]
[call site]
03643
calloc
[call site]
03644
cram_uncompress_block
[function]
[call site]
03645
kh_init_map
[function]
[call site]
03646
cram_free_compression_header
[function]
[call site]
03647
cram_free_compression_header
[function]
[call site]
03648
kh_put_map
[function]
[call site]
03649
cram_free_compression_header
[function]
[call site]
03650
kh_put_map
[function]
[call site]
03651
cram_free_compression_header
[function]
[call site]
03652
kh_put_map
[function]
[call site]
03653
cram_free_compression_header
[function]
[call site]
03654
kh_put_map
[function]
[call site]
03655
cram_free_compression_header
[function]
[call site]
03656
cram_free_compression_header
[function]
[call site]
03657
kh_put_map
[function]
[call site]
03658
cram_free_compression_header
[function]
[call site]
03659
cram_decode_TD
[function]
[call site]
03660
cram_new_block
[function]
[call site]
03661
hts_log
[function]
[call site]
03662
cram_free_block
[function]
[call site]
03663
cram_free_block
[function]
[call site]
03664
cram_free_block
[function]
[call site]
03665
block_append
[function]
[call site]
03666
block_append_char
[function]
[call site]
03667
calloc
[call site]
03668
cram_free_block
[function]
[call site]
03669
cram_free_block
[function]
[call site]
03670
cram_free_compression_header
[function]
[call site]
03671
kh_put_map
[function]
[call site]
03672
cram_free_compression_header
[function]
[call site]
03673
hts_log
[function]
[call site]
03674
cram_free_compression_header
[function]
[call site]
03675
cram_free_compression_header
[function]
[call site]
03676
cram_free_compression_header
[function]
[call site]
03677
hts_log
[function]
[call site]
03678
hts_log
[function]
[call site]
03679
cram_decoder_init
[function]
[call site]
03680
cram_encoding2str
[function]
[call site]
03681
hts_log
[function]
[call site]
03682
cram_free_compression_header
[function]
[call site]
03683
cram_free_compression_header
[function]
[call site]
03684
cram_free_compression_header
[function]
[call site]
03685
cram_free_compression_header
[function]
[call site]
03686
cram_decoder_init
[function]
[call site]
03687
cram_free_compression_header
[function]
[call site]
03688
cram_free_compression_header
[function]
[call site]
03689
sam_hrecs_sort_order
[function]
[call site]
03690
TYPEKEY
[function]
[call site]
03691
kh_get_sam_hrecs_t
[function]
[call site]
03692
strcmp
[call site]
03693
strcmp
[call site]
03694
strcmp
[call site]
03695
strcmp
[call site]
03696
hts_log
[function]
[call site]
03697
pthread_mutex_lock
[call site]
03698
pthread_mutex_unlock
[call site]
03699
cram_free_slice
[function]
[call site]
03700
cram_free_container
[function]
[call site]
03701
cram_read_container
[function]
[call site]
03702
cram_free_container
[function]
[call site]
03703
cram_free_container
[function]
[call site]
03704
cram_free_container
[function]
[call site]
03705
cram_free_container
[function]
[call site]
03706
hseek
[function]
[call site]
03707
cram_read_block
[function]
[call site]
03708
cram_decode_compression_header
[function]
[call site]
03709
sam_hrecs_sort_order
[function]
[call site]
03710
pthread_mutex_lock
[call site]
03711
pthread_mutex_unlock
[call site]
03712
cram_free_container
[function]
[call site]
03713
cram_read_slice
[function]
[call site]
03714
cram_read_block
[function]
[call site]
03715
calloc
[call site]
03716
cram_decode_slice_header
[function]
[call site]
03717
cram_uncompress_block
[function]
[call site]
03718
calloc
[call site]
03719
hts_log
[function]
[call site]
03720
cram_content_type2str
[function]
[call site]
03721
hts_log
[function]
[call site]
03722
hts_log
[function]
[call site]
03723
calloc
[call site]
03724
cram_read_block
[function]
[call site]
03725
calloc
[call site]
03726
cram_new_block
[function]
[call site]
03727
cram_new_block
[function]
[call site]
03728
cram_new_block
[function]
[call site]
03729
cram_new_block
[function]
[call site]
03730
cram_new_block
[function]
[call site]
03731
cram_new_block
[function]
[call site]
03732
cram_free_block
[function]
[call site]
03733
cram_free_slice
[function]
[call site]
03734
cram_free_slice
[function]
[call site]
03735
cram_free_slice
[function]
[call site]
03736
cram_free_slice
[function]
[call site]
03737
cram_decode_slice_mt
[function]
[call site]
03738
cram_decode_slice
[function]
[call site]
03739
hts_tpool_process_sz
[function]
[call site]
03740
pthread_mutex_lock
[call site]
03741
pthread_mutex_unlock
[call site]
03742
__errno_location
[call site]
03743
__errno_location
[call site]
03744
hts_tpool_dispatch2
[function]
[call site]
03745
cram_decode_slice_thread
[function]
[call site]
03746
cram_decode_slice
[function]
[call site]
03747
__errno_location
[call site]
03748
__errno_location
[call site]
03749
cram_free_slice
[function]
[call site]
03750
hts_tpool_process_len
[function]
[call site]
03751
pthread_mutex_lock
[call site]
03752
pthread_mutex_unlock
[call site]
03753
hts_tpool_process_qsize
[function]
[call site]
03754
hts_tpool_process_empty
[function]
[call site]
03755
hts_tpool_next_result_wait
[function]
[call site]
03756
hts_tpool_result_data
[function]
[call site]
03757
hts_log
[function]
[call site]
03758
hts_tpool_result_data
[function]
[call site]
03759
hts_log
[function]
[call site]
03760
hts_tpool_delete_result
[function]
[call site]
03761
hts_tpool_delete_result
[function]
[call site]
03762
cram_free_slice
[function]
[call site]
03763
cram_free_slice
[function]
[call site]
03764
cram_to_bam
[function]
[call site]
03765
strlen
[call site]
03766
append_uint64
[function]
[call site]
03767
append_uint32
[function]
[call site]
03768
append_uint32
[function]
[call site]
03769
append_sub32
[function]
[call site]
03770
append_uint32
[function]
[call site]
03771
append_sub32
[function]
[call site]
03772
append_uint64
[function]
[call site]
03773
bam_set1
[function]
[call site]
03774
bam_cigar2rqlens
[function]
[call site]
03775
hts_log
[function]
[call site]
03776
__errno_location
[call site]
03777
hts_log
[function]
[call site]
03778
__errno_location
[call site]
03779
hts_log
[function]
[call site]
03780
__errno_location
[call site]
03781
hts_log
[function]
[call site]
03782
__errno_location
[call site]
03783
subtract_check_underflow
[function]
[call site]
03784
subtract_check_underflow
[function]
[call site]
03785
subtract_check_underflow
[function]
[call site]
03786
subtract_check_underflow
[function]
[call site]
03787
subtract_check_underflow
[function]
[call site]
03788
hts_log
[function]
[call site]
03789
__errno_location
[call site]
03790
realloc_bam_data
[function]
[call site]
03791
hts_reg2bin
[function]
[call site]
03792
strncpy
[call site]
03793
cram_eof
[function]
[call site]
03794
bam_tag2cigar
[function]
[call site]
03795
sam_read1_sam
[function]
[call site]
03796
sam_parse1
[function]
[call site]
03797
strchr
[call site]
03798
hts_log
[function]
[call site]
03799
hts_log
[function]
[call site]
03800
possibly_expand_bam_data
[function]
[call site]
03801
parse_sam_flag
[function]
[call site]
03802
hts_str2uint
[function]
[call site]
03803
strtoul
[call site]
03804
strchr
[call site]
03805
strcmp
[call site]
03806
hts_log
[function]
[call site]
03807
bam_name2id
[function]
[call site]
03808
sam_hdr_name2tid
[function]
[call site]
03809
sam_hdr_fill_hrecs
[function]
[call site]
03810
kh_get_m_s2i
[function]
[call site]
03811
hts_log
[function]
[call site]
03812
hts_strprint
[function]
[call site]
03813
isprint_c
[function]
[call site]
03814
__ctype_b_loc
[call site]
03815
strcpy
[call site]
03816
snprintf
[call site]
03817
hts_log
[function]
[call site]
03818
hts_str2uint
[function]
[call site]
03819
hts_log
[function]
[call site]
03820
hts_str2uint
[function]
[call site]
03821
bam_parse_cigar
[function]
[call site]
03822
hts_log
[function]
[call site]
03823
read_ncigar
[function]
[call site]
03824
isdigit_c
[function]
[call site]
03825
hts_log
[function]
[call site]
03826
hts_log
[function]
[call site]
03827
possibly_expand_bam_data
[function]
[call site]
03828
hts_log
[function]
[call site]
03829
parse_cigar
[function]
[call site]
03830
hts_str2uint
[function]
[call site]
03831
hts_log
[function]
[call site]
03832
hts_log
[function]
[call site]
03833
bam_cigar2rlen
[function]
[call site]
03834
hts_log
[function]
[call site]
03835
strchr
[call site]
03836
hts_log
[function]
[call site]
03837
hts_reg2bin
[function]
[call site]
03838
strchr
[call site]
03839
strcmp
[call site]
03840
strcmp
[call site]
03841
bam_name2id
[function]
[call site]
03842
hts_log
[function]
[call site]
03843
hts_strprint
[function]
[call site]
03844
hts_log
[function]
[call site]
03845
hts_str2uint
[function]
[call site]
03846
hts_log
[function]
[call site]
03847
hts_str2int
[function]
[call site]
03848
hts_log
[function]
[call site]
03849
strchr
[call site]
03850
strcmp
[call site]
03851
hts_log
[function]
[call site]
03852
bam_cigar2qlen
[function]
[call site]
03853
hts_log
[function]
[call site]
03854
possibly_expand_bam_data
[function]
[call site]
03855
possibly_expand_bam_data
[function]
[call site]
03856
hts_log
[function]
[call site]
03857
hts_log
[function]
[call site]
03858
aux_parse
[function]
[call site]
03859
hts_log
[function]
[call site]
03860
isspace_c
[function]
[call site]
03861
hts_log
[function]
[call site]
03862
isspace_c
[function]
[call site]
03863
isspace_c
[function]
[call site]
03864
kh_get_tag
[function]
[call site]
03865
possibly_expand_bam_data
[function]
[call site]
03866
isspace_c
[function]
[call site]
03867
hts_log
[function]
[call site]
03868
possibly_expand_bam_data
[function]
[call site]
03869
hts_str2int
[function]
[call site]
03870
i16_to_le
[function]
[call site]
03871
u16_to_le
[function]
[call site]
03872
i32_to_le
[function]
[call site]
03873
u32_to_le
[function]
[call site]
03874
hts_str2uint
[function]
[call site]
03875
u16_to_le
[function]
[call site]
03876
u32_to_le
[function]
[call site]
03877
strtod
[call site]
03878
float_to_le
[function]
[call site]
03879
u32_to_le
[function]
[call site]
03880
strtod
[call site]
03881
double_to_le
[function]
[call site]
03882
u64_to_le
[function]
[call site]
03883
strchr
[call site]
03884
strlen
[call site]
03885
isspace_c
[function]
[call site]
03886
hts_log
[function]
[call site]
03887
possibly_expand_bam_data
[function]
[call site]
03888
isspace_c
[function]
[call site]
03889
hts_log
[function]
[call site]
03890
sam_parse_B_vals
[function]
[call site]
03891
sam_parse_B_vals_r
[function]
[call site]
03892
hts_log
[function]
[call site]
03893
aux_type2size
[function]
[call site]
03894
hts_log
[function]
[call site]
03895
possibly_expand_bam_data
[function]
[call site]
03896
hts_log
[function]
[call site]
03897
sam_parse_Bc_vals
[function]
[call site]
03898
grow_B_array
[function]
[call site]
03899
__errno_location
[call site]
03900
possibly_expand_bam_data
[function]
[call site]
03901
hts_log
[function]
[call site]
03902
hts_str2int
[function]
[call site]
03903
sam_parse_BC_vals
[function]
[call site]
03904
grow_B_array
[function]
[call site]
03905
hts_str2uint
[function]
[call site]
03906
sam_parse_Bs_vals
[function]
[call site]
03907
grow_B_array
[function]
[call site]
03908
hts_str2int
[function]
[call site]
03909
i16_to_le
[function]
[call site]
03910
sam_parse_BS_vals
[function]
[call site]
03911
grow_B_array
[function]
[call site]
03912
hts_str2uint
[function]
[call site]
03913
u16_to_le
[function]
[call site]
03914
sam_parse_Bi_vals
[function]
[call site]
03915
grow_B_array
[function]
[call site]
03916
hts_str2int
[function]
[call site]
03917
i32_to_le
[function]
[call site]
03918
sam_parse_BI_vals
[function]
[call site]
03919
grow_B_array
[function]
[call site]
03920
hts_str2uint
[function]
[call site]
03921
u32_to_le
[function]
[call site]
03922
sam_parse_Bf_vals
[function]
[call site]
03923
grow_B_array
[function]
[call site]
03924
strtod
[call site]
03925
float_to_le
[function]
[call site]
03926
hts_log
[function]
[call site]
03927
i32_to_le
[function]
[call site]
03928
hts_str2int
[function]
[call site]
03929
sam_parse_B_vals_r
[function]
[call site]
03930
sam_parse_B_vals_r
[function]
[call site]
03931
sam_parse_B_vals_r
[function]
[call site]
03932
sam_parse_B_vals_r
[function]
[call site]
03933
sam_parse_B_vals_r
[function]
[call site]
03934
sam_parse_B_vals_r
[function]
[call site]
03935
hts_log
[function]
[call site]
03936
isspace_c
[function]
[call site]
03937
hts_strprint
[function]
[call site]
03938
hts_log
[function]
[call site]
03939
isspace_c
[function]
[call site]
03940
hts_log
[function]
[call site]
03941
bam_tag2cigar
[function]
[call site]
03942
sam_state_destroy
[function]
[call site]
03943
__errno_location
[call site]
03944
bgzf_seek
[function]
[call site]
03945
bgzf_seek_common
[function]
[call site]
03946
sam_hdr_fill_hrecs
[function]
[call site]
03947
pthread_create
[call site]
03948
sam_dispatcher_read
[function]
[call site]
03949
ks_resize
[function]
[call site]
03950
pthread_mutex_lock
[call site]
03951
pthread_cond_signal
[call site]
03952
pthread_mutex_unlock
[call site]
03953
hts_tpool_process_shutdown
[function]
[call site]
03954
pthread_mutex_unlock
[call site]
03955
pthread_mutex_lock
[call site]
03956
pthread_mutex_unlock
[call site]
03957
calloc
[call site]
03958
realloc
[call site]
03959
bgzf_read
[function]
[call site]
03960
hread
[function]
[call site]
03961
__errno_location
[call site]
03962
sam_state_err
[function]
[call site]
03963
realloc
[call site]
03964
__assert_fail
[call site]
03965
__assert_fail
[call site]
03966
__assert_fail
[call site]
03967
ks_resize
[function]
[call site]
03968
hts_tpool_dispatch3
[function]
[call site]
03969
sam_parse_worker
[function]
[call site]
03970
pthread_mutex_lock
[call site]
03971
pthread_mutex_unlock
[call site]
03972
calloc
[call site]
03973
calloc
[call site]
03974
sam_state_err
[function]
[call site]
03975
sam_state_err
[function]
[call site]
03976
realloc
[call site]
03977
sam_state_err
[function]
[call site]
03978
strchr
[call site]
03979
sam_parse1
[function]
[call site]
03980
__errno_location
[call site]
03981
sam_state_err
[function]
[call site]
03982
cleanup_sp_lines
[function]
[call site]
03983
__assert_fail
[call site]
03984
sam_free_sp_bams
[function]
[call site]
03985
pthread_mutex_lock
[call site]
03986
pthread_mutex_unlock
[call site]
03987
sam_free_sp_bams
[function]
[call site]
03988
cleanup_sp_lines
[function]
[call site]
03989
cleanup_sp_bams
[function]
[call site]
03990
sam_free_sp_bams
[function]
[call site]
03991
pthread_mutex_lock
[call site]
03992
pthread_mutex_unlock
[call site]
03993
pthread_mutex_unlock
[call site]
03994
hts_tpool_dispatch
[function]
[call site]
03995
sam_parse_eof
[function]
[call site]
03996
pthread_cond_wait
[call site]
03997
pthread_cond_signal
[call site]
03998
pthread_mutex_unlock
[call site]
03999
hts_tpool_process_shutdown
[function]
[call site]
04000
pthread_mutex_unlock
[call site]
04001
pthread_mutex_lock
[call site]
04002
pthread_cond_signal
[call site]
04003
pthread_mutex_unlock
[call site]
04004
pthread_mutex_lock
[call site]
04005
pthread_mutex_unlock
[call site]
04006
__errno_location
[call site]
04007
sam_state_err
[function]
[call site]
04008
hts_tpool_process_shutdown
[function]
[call site]
04009
hts_log
[function]
[call site]
04010
__errno_location
[call site]
04011
pthread_mutex_lock
[call site]
04012
pthread_mutex_unlock
[call site]
04013
hts_tpool_next_result_wait
[function]
[call site]
04014
hts_tpool_result_data
[function]
[call site]
04015
pthread_mutex_lock
[call site]
04016
pthread_mutex_unlock
[call site]
04017
bam_copy1
[function]
[call site]
04018
realloc_bam_data
[function]
[call site]
04019
pthread_mutex_lock
[call site]
04020
pthread_mutex_unlock
[call site]
04021
hts_getline
[function]
[call site]
04022
sam_parse1
[function]
[call site]
04023
hts_log
[function]
[call site]
04024
fastq_state_init
[function]
[call site]
04025
fastq_parse1
[function]
[call site]
04026
hts_getline
[function]
[call site]
04027
strpbrk
[call site]
04028
isspace_c
[function]
[call site]
04029
isspace_c
[function]
[call site]
04030
hts_getline
[function]
[call site]
04031
kputsn
[function]
[call site]
04032
hts_getline
[function]
[call site]
04033
kputsn
[function]
[call site]
04034
isdigit_c
[function]
[call site]
04035
regexec
[call site]
04036
hts_log
[function]
[call site]
04037
isalpha_c
[function]
[call site]
04038
bam_set1
[function]
[call site]
04039
bam_aux_append
[function]
[call site]
04040
__assert_fail
[call site]
04041
realloc_bam_data
[function]
[call site]
04042
__errno_location
[call site]
04043
isdigit_c
[function]
[call site]
04044
strtol
[call site]
04045
isdigit_c
[function]
[call site]
04046
isspace_c
[function]
[call site]
04047
bam_aux_append
[function]
[call site]
04048
aux_parse
[function]
[call site]
04049
__errno_location
[call site]
04050
__errno_location
[call site]
04051
sam_passes_filter
[function]
[call site]
04052
hts_filter_eval2
[function]
[call site]
04053
ks_free
[function]
[call site]
04054
hts_filter_eval_
[function]
[call site]
04055
expression
[function]
[call site]
04056
and_expr
[function]
[call site]
04057
eq_expr
[function]
[call site]
04058
cmp_expr
[function]
[call site]
04059
bitor_expr
[function]
[call site]
04060
bitxor_expr
[function]
[call site]
04061
bitand_expr
[function]
[call site]
04062
add_expr
[function]
[call site]
04063
mul_expr
[function]
[call site]
04064
unary_expr
[function]
[call site]
04065
ws
[function]
[call site]
04066
simple_expr
[function]
[call site]
04067
ws
[function]
[call site]
04068
expression
[function]
[call site]
04069
ws
[function]
[call site]
04070
fprintf
[call site]
04071
hts_str2dbl
[function]
[call site]
04072
ks_clear
[function]
[call site]
04076
kputsn
[function]
[call site]
04077
func_expr
[function]
[call site]
04078
strncmp
[call site]
04079
expression
[function]
[call site]
04080
expr_func_avg
[function]
[call site]
04081
strncmp
[call site]
04082
expression
[function]
[call site]
04083
ws
[function]
[call site]
04084
expression
[function]
[call site]
04085
hts_expr_val_existsT
[function]
[call site]
04086
hts_expr_val_exists
[function]
[call site]
04087
hts_expr_val_free
[function]
[call site]
04088
ks_free
[function]
[call site]
04089
strncmp
[call site]
04090
expression
[function]
[call site]
04091
hts_expr_val_existsT
[function]
[call site]
04092
strncmp
[call site]
04093
expression
[function]
[call site]
04094
exp
[call site]
04095
hts_expr_val_undef
[function]
[call site]
04096
ks_clear
[function]
[call site]
04097
strncmp
[call site]
04098
expression
[function]
[call site]
04099
expr_func_length
[function]
[call site]
04100
strncmp
[call site]
04101
expression
[function]
[call site]
04102
log
[call site]
04103
hts_expr_val_undef
[function]
[call site]
04104
strncmp
[call site]
04105
expression
[function]
[call site]
04106
expr_func_min
[function]
[call site]
04107
strncmp
[call site]
04108
expression
[function]
[call site]
04109
expr_func_max
[function]
[call site]
04110
strncmp
[call site]
04111
expression
[function]
[call site]
04112
ws
[function]
[call site]
04113
expression
[function]
[call site]
04114
hts_expr_val_exists
[function]
[call site]
04115
hts_expr_val_undef
[function]
[call site]
04116
hts_expr_val_free
[function]
[call site]
04117
pow
[call site]
04118
hts_expr_val_free
[function]
[call site]
04119
hts_expr_val_undef
[function]
[call site]
04120
strncmp
[call site]
04121
expression
[function]
[call site]
04122
sqrt
[call site]
04123
hts_expr_val_undef
[function]
[call site]
04124
ws
[function]
[call site]
04125
fprintf
[call site]
04126
hts_expr_val_exists
[function]
[call site]
04127
hts_expr_val_undef
[function]
[call site]
04128
unary_expr
[function]
[call site]
04129
hts_expr_val_exists
[function]
[call site]
04130
unary_expr
[function]
[call site]
04131
hts_expr_val_exists
[function]
[call site]
04132
hts_expr_val_undef
[function]
[call site]
04133
hts_expr_val_exists
[function]
[call site]
04134
hts_expr_val_undef
[function]
[call site]
04135
simple_expr
[function]
[call site]
04136
ws
[function]
[call site]
04137
unary_expr
[function]
[call site]
04138
hts_expr_val_exists
[function]
[call site]
04139
hts_expr_val_undef
[function]
[call site]
04140
hts_expr_val_free
[function]
[call site]
04141
hts_expr_val_undef
[function]
[call site]
04142
hts_expr_val_exists
[function]
[call site]
04143
hts_expr_val_free
[function]
[call site]
04144
ws
[function]
[call site]
04145
mul_expr
[function]
[call site]
04146
hts_expr_val_exists
[function]
[call site]
04147
hts_expr_val_free
[function]
[call site]
04148
hts_expr_val_undef
[function]
[call site]
04149
hts_expr_val_free
[function]
[call site]
04150
ws
[function]
[call site]
04151
add_expr
[function]
[call site]
04152
hts_expr_val_exists
[function]
[call site]
04153
hts_expr_val_free
[function]
[call site]
04154
hts_expr_val_free
[function]
[call site]
04155
hts_expr_val_undef
[function]
[call site]
04156
ws
[function]
[call site]
04157
bitand_expr
[function]
[call site]
04158
hts_expr_val_exists
[function]
[call site]
04159
hts_expr_val_free
[function]
[call site]
04160
hts_expr_val_free
[function]
[call site]
04161
hts_expr_val_undef
[function]
[call site]
04162
ws
[function]
[call site]
04163
bitxor_expr
[function]
[call site]
04164
hts_expr_val_exists
[function]
[call site]
04165
hts_expr_val_free
[function]
[call site]
04166
hts_expr_val_free
[function]
[call site]
04167
hts_expr_val_undef
[function]
[call site]
04168
ws
[function]
[call site]
04169
cmp_expr
[function]
[call site]
04170
hts_expr_val_exists
[function]
[call site]
04171
hts_expr_val_undef
[function]
[call site]
04172
strcmp
[call site]
04173
cmp_expr
[function]
[call site]
04174
hts_expr_val_exists
[function]
[call site]
04175
hts_expr_val_undef
[function]
[call site]
04176
strcmp
[call site]
04177
cmp_expr
[function]
[call site]
04178
hts_expr_val_exists
[function]
[call site]
04179
hts_expr_val_undef
[function]
[call site]
04180
strcmp
[call site]
04181
cmp_expr
[function]
[call site]
04182
hts_expr_val_exists
[function]
[call site]
04183
hts_expr_val_undef
[function]
[call site]
04184
strcmp
[call site]
04185
hts_expr_val_exists
[function]
[call site]
04186
hts_expr_val_undef
[function]
[call site]
04187
hts_expr_val_free
[function]
[call site]
04188
ws
[function]
[call site]
04189
eq_expr
[function]
[call site]
04190
hts_expr_val_exists
[function]
[call site]
04191
hts_expr_val_undef
[function]
[call site]
04192
strcmp
[call site]
04193
eq_expr
[function]
[call site]
04194
hts_expr_val_exists
[function]
[call site]
04195
hts_expr_val_undef
[function]
[call site]
04196
strcmp
[call site]
04197
eq_expr
[function]
[call site]
04198
hts_expr_val_free
[function]
[call site]
04199
regcomp
[call site]
04200
regerror
[call site]
04201
fprintf
[call site]
04202
hts_expr_val_free
[function]
[call site]
04203
regexec
[call site]
04204
regfree
[call site]
04205
hts_expr_val_exists
[function]
[call site]
04206
hts_expr_val_undef
[function]
[call site]
04207
hts_expr_val_free
[function]
[call site]
04208
ws
[function]
[call site]
04209
eq_expr
[function]
[call site]
04210
hts_expr_val_existsT
[function]
[call site]
04211
hts_expr_val_undef
[function]
[call site]
04212
eq_expr
[function]
[call site]
04213
hts_expr_val_existsT
[function]
[call site]
04214
hts_expr_val_undef
[function]
[call site]
04215
hts_expr_val_existsT
[function]
[call site]
04216
hts_expr_val_undef
[function]
[call site]
04217
hts_expr_val_existsT
[function]
[call site]
04218
hts_expr_val_undef
[function]
[call site]
04219
hts_expr_val_free
[function]
[call site]
04220
ws
[function]
[call site]
04221
fprintf
[call site]
04222
hts_expr_val_exists
[function]
[call site]
04223
bam_sym_lookup
[function]
[call site]
04224
memcmp
[call site]
04225
ks_clear
[function]
[call site]
04226
kputw
[function]
[call site]
04227
kputc_
[function]
[call site]
04228
kputs
[function]
[call site]
04229
kputs
[function]
[call site]
04230
memcmp
[call site]
04231
bam_endpos
[function]
[call site]
04232
memcmp
[call site]
04233
memcmp
[call site]
04234
memcmp
[call site]
04235
memcmp
[call site]
04236
memcmp
[call site]
04237
memcmp
[call site]
04238
memcmp
[call site]
04239
memcmp
[call site]
04240
memcmp
[call site]
04241
memcmp
[call site]
04242
memcmp
[call site]
04243
memcmp
[call site]
04244
memcmp
[call site]
04245
hts_log
[function]
[call site]
04246
memcmp
[call site]
04247
memcmp
[call site]
04248
bam_get_library
[function]
[call site]
04249
bam_aux_get
[function]
[call site]
04250
sam_hdr_find_tag_id
[function]
[call site]
04251
ks_clear
[function]
[call site]
04252
kputs
[function]
[call site]
04253
memcmp
[call site]
04254
memcmp
[call site]
04255
memcmp
[call site]
04256
sam_hdr_tid2name
[function]
[call site]
04257
ks_clear
[function]
[call site]
04258
kputs
[function]
[call site]
04259
memcmp
[call site]
04260
memcmp
[call site]
04261
memcmp
[call site]
04262
memcmp
[call site]
04263
memcmp
[call site]
04264
bam_cigar2qlen
[function]
[call site]
04265
memcmp
[call site]
04266
ks_clear
[function]
[call site]
04267
kputs
[function]
[call site]
04268
memcmp
[call site]
04269
ks_clear
[function]
[call site]
04270
ks_resize
[function]
[call site]
04271
memcmp
[call site]
04272
bam_cigar2rlen
[function]
[call site]
04273
memcmp
[call site]
04274
sam_hdr_tid2name
[function]
[call site]
04275
ks_clear
[function]
[call site]
04276
kputs
[function]
[call site]
04277
memcmp
[call site]
04278
sam_hdr_tid2name
[function]
[call site]
04279
ks_clear
[function]
[call site]
04280
kputs
[function]
[call site]
04281
memcmp
[call site]
04282
memcmp
[call site]
04283
ks_clear
[function]
[call site]
04284
ks_resize
[function]
[call site]
04285
nibble2base
[function]
[call site]
04286
memcmp
[call site]
04287
memcmp
[call site]
04288
bam_aux_get
[function]
[call site]
04289
ks_clear
[function]
[call site]
04290
kputs
[function]
[call site]
04291
ks_clear
[function]
[call site]
04292
kputsn
[function]
[call site]
04293
bam_aux2i
[function]
[call site]
04294
get_int_aux_val
[function]
[call site]
04295
le_to_i8
[function]
[call site]
04296
le_to_i16
[function]
[call site]
04297
le_to_u16
[function]
[call site]
04298
le_to_i32
[function]
[call site]
04299
le_to_u32
[function]
[call site]
04300
__errno_location
[call site]
04301
bam_aux2f
[function]
[call site]
04302
le_to_double
[function]
[call site]
04303
le_to_float
[function]
[call site]
04304
get_int_aux_val
[function]
[call site]
04305
hts_log
[function]
[call site]
04306
hts_log
[function]
[call site]
04307
hts_expr_val_free
[function]
[call site]
04308
hts_expr_val_free
[function]
[call site]
04309
sam_write1
[function]
[call site]
04310
bam_write_idx1
[function]
[call site]
04311
bam_write1
[function]
[call site]
04312
hts_log
[function]
[call site]
04313
__errno_location
[call site]
04314
hts_log
[function]
[call site]
04315
bgzf_flush_try
[function]
[call site]
04316
lazy_flush
[function]
[call site]
04317
ed_swap_4p
[function]
[call site]
04318
ed_swap_4p
[function]
[call site]
04319
bgzf_write_small
[function]
[call site]
04320
bgzf_write
[function]
[call site]
04321
swap_data
[function]
[call site]
04322
bgzf_write_small
[function]
[call site]
04323
bgzf_write_small
[function]
[call site]
04324
bgzf_write_small
[function]
[call site]
04325
bgzf_write_small
[function]
[call site]
04326
bam_cigar2rlen
[function]
[call site]
04327
hts_log
[function]
[call site]
04328
u32_to_le
[function]
[call site]
04329
u32_to_le
[function]
[call site]
04330
bgzf_write_small
[function]
[call site]
04331
bgzf_write_small
[function]
[call site]
04332
bgzf_write_small
[function]
[call site]
04333
u32_to_le
[function]
[call site]
04334
bgzf_write_small
[function]
[call site]
04335
bgzf_write_small
[function]
[call site]
04336
swap_data
[function]
[call site]
04337
bgzf_flush_try
[function]
[call site]
04338
hts_idx_amend_last
[function]
[call site]
04339
bam_write1
[function]
[call site]
04340
bam_endpos
[function]
[call site]
04341
bgzf_idx_push
[function]
[call site]
04342
hts_idx_push
[function]
[call site]
04343
hts_idx_check_range
[function]
[call site]
04344
hts_idx_maxpos
[function]
[call site]
04345
hts_bin_maxpos
[function]
[call site]
04346
hts_log
[function]
[call site]
04347
idx_format_name
[function]
[call site]
04348
hts_log
[function]
[call site]
04349
__errno_location
[call site]
04350
realloc
[call site]
04351
realloc
[call site]
04352
hts_log
[function]
[call site]
04353
hts_log
[function]
[call site]
04354
hts_log
[function]
[call site]
04355
hts_log
[function]
[call site]
04356
kh_init_bin
[function]
[call site]
04357
calloc
[call site]
04358
insert_to_l
[function]
[call site]
04359
realloc
[call site]
04360
hts_reg2bin
[function]
[call site]
04361
insert_to_b
[function]
[call site]
04362
kh_put_bin
[function]
[call site]
04363
kh_resize_bin
[function]
[call site]
04364
realloc
[call site]
04365
calloc
[call site]
04366
kh_del_bin
[function]
[call site]
04367
realloc
[call site]
04368
insert_to_b
[function]
[call site]
04369
insert_to_b
[function]
[call site]
04370
hts_idx_check_range
[function]
[call site]
04371
pthread_mutex_lock
[call site]
04372
realloc
[call site]
04373
pthread_mutex_unlock
[call site]
04374
pthread_mutex_unlock
[call site]
04375
sam_hdr_tid2name
[function]
[call site]
04376
sam_hdr_tid2len
[function]
[call site]
04377
kh_get_s2i
[function]
[call site]
04378
hts_log
[function]
[call site]
04379
cram_put_bam_seq
[function]
[call site]
04380
cram_new_container
[function]
[call site]
04381
pthread_mutex_lock
[call site]
04382
pthread_mutex_unlock
[call site]
04383
hts_log
[function]
[call site]
04384
pthread_mutex_lock
[call site]
04385
hts_log
[function]
[call site]
04386
pthread_mutex_unlock
[call site]
04387
cram_next_container
[function]
[call site]
04388
cram_update_curr_slice
[function]
[call site]
04389
hts_log
[function]
[call site]
04390
cram_flush_container_mt
[function]
[call site]
04391
cram_free_slice
[function]
[call site]
04392
cram_free_container
[function]
[call site]
04393
cram_new_container
[function]
[call site]
04394
pthread_mutex_lock
[call site]
04395
pthread_mutex_unlock
[call site]
04396
cram_new_slice
[function]
[call site]
04397
calloc
[call site]
04398
calloc
[call site]
04399
cram_new_block
[function]
[call site]
04400
cram_new_block
[function]
[call site]
04401
cram_new_block
[function]
[call site]
04402
cram_new_block
[function]
[call site]
04403
cram_new_block
[function]
[call site]
04404
cram_new_block
[function]
[call site]
04405
string_pool_create
[function]
[call site]
04406
kh_init_m_s2i
[function]
[call site]
04407
kh_init_m_s2i
[function]
[call site]
04408
cram_free_slice
[function]
[call site]
04409
pthread_mutex_lock
[call site]
04410
hts_log
[function]
[call site]
04411
pthread_mutex_unlock
[call site]
04412
pthread_mutex_lock
[call site]
04413
calloc
[call site]
04414
pthread_mutex_unlock
[call site]
04415
pthread_mutex_lock
[call site]
04416
calloc
[call site]
04417
pthread_mutex_unlock
[call site]
04418
pthread_mutex_lock
[call site]
04419
pthread_mutex_unlock
[call site]
04420
pthread_mutex_lock
[call site]
04421
calloc
[call site]
04422
pthread_mutex_unlock
[call site]
04423
pthread_mutex_unlock
[call site]
04424
bam_copy1
[function]
[call site]
04425
bam_dup1
[function]
[call site]
04426
bam_init1
[function]
[call site]
04427
bam_copy1
[function]
[call site]
04428
bam_destroy1
[function]
[call site]
04429
bam_cigar2qlen
[function]
[call site]
04430
hts_log
[function]
[call site]
04431
pthread_create
[call site]
04432
sam_dispatcher_write
[function]
[call site]
04433
hts_tpool_next_result_wait
[function]
[call site]
04434
hts_tpool_result_data
[function]
[call site]
04435
sam_state_err
[function]
[call site]
04436
bgzf_flush_try
[function]
[call site]
04437
bgzf_write
[function]
[call site]
04438
hwrite
[function]
[call site]
04439
bam_endpos
[function]
[call site]
04440
bgzf_idx_push
[function]
[call site]
04441
__errno_location
[call site]
04442
sam_state_err
[function]
[call site]
04443
sam_hdr_tid2name
[function]
[call site]
04444
sam_hdr_tid2len
[function]
[call site]
04445
hts_log
[function]
[call site]
04446
bam_endpos
[function]
[call site]
04447
hts_idx_push
[function]
[call site]
04448
__errno_location
[call site]
04449
sam_state_err
[function]
[call site]
04450
sam_hdr_tid2name
[function]
[call site]
04451
sam_hdr_tid2len
[function]
[call site]
04452
hts_log
[function]
[call site]
04453
__assert_fail
[call site]
04454
pthread_mutex_lock
[call site]
04455
pthread_mutex_unlock
[call site]
04456
bgzf_write
[function]
[call site]
04457
bgzf_flush_try
[function]
[call site]
04458
bgzf_write
[function]
[call site]
04459
hwrite
[function]
[call site]
04460
hts_tpool_delete_result
[function]
[call site]
04461
pthread_mutex_lock
[call site]
04462
pthread_mutex_unlock
[call site]
04463
sam_state_err
[function]
[call site]
04464
hts_tpool_process_shutdown
[function]
[call site]
04465
__errno_location
[call site]
04466
sam_state_err
[function]
[call site]
04467
hts_log
[function]
[call site]
04468
pthread_mutex_lock
[call site]
04469
pthread_mutex_unlock
[call site]
04470
pthread_mutex_unlock
[call site]
04471
calloc
[call site]
04472
calloc
[call site]
04473
bam_copy1
[function]
[call site]
04474
pthread_mutex_lock
[call site]
04475
pthread_mutex_unlock
[call site]
04476
hts_tpool_dispatch3
[function]
[call site]
04477
sam_format_worker
[function]
[call site]
04478
cleanup_sp_bams
[function]
[call site]
04479
cleanup_sp_lines
[function]
[call site]
04480
pthread_mutex_unlock
[call site]
04481
pthread_mutex_unlock
[call site]
04482
sam_format1
[function]
[call site]
04483
sam_format1_append
[function]
[call site]
04484
kputc
[function]
[call site]
04485
bgzf_flush_try
[function]
[call site]
04486
bgzf_write
[function]
[call site]
04487
hwrite
[function]
[call site]
04488
bam_endpos
[function]
[call site]
04489
bgzf_idx_push
[function]
[call site]
04490
sam_hdr_tid2name
[function]
[call site]
04491
sam_hdr_tid2len
[function]
[call site]
04492
hts_log
[function]
[call site]
04493
bam_endpos
[function]
[call site]
04494
hts_idx_push
[function]
[call site]
04495
sam_hdr_tid2name
[function]
[call site]
04496
sam_hdr_tid2len
[function]
[call site]
04497
hts_log
[function]
[call site]
04498
fastq_state_init
[function]
[call site]
04499
fastq_format1
[function]
[call site]
04500
kputc
[function]
[call site]
04501
kputs
[function]
[call site]
04502
bam_aux_get
[function]
[call site]
04503
kputc
[function]
[call site]
04504
isalpha_c
[function]
[call site]
04505
toupper_c
[function]
[call site]
04506
kputc
[function]
[call site]
04507
kputs
[function]
[call site]
04508
kputs
[function]
[call site]
04509
kputs
[function]
[call site]
04510
bam_aux_get
[function]
[call site]
04511
ksprintf
[function]
[call site]
04512
isupper_c
[function]
[call site]
04513
__ctype_b_loc
[call site]
04514
islower_c
[function]
[call site]
04515
__ctype_b_loc
[call site]
04516
hts_log
[function]
[call site]
04517
strlen
[call site]
04518
strlen
[call site]
04519
isalpha_c
[function]
[call site]
04520
islower_c
[function]
[call site]
04521
toupper_c
[function]
[call site]
04522
kh_get_tag
[function]
[call site]
04523
kputc_
[function]
[call site]
04524
sam_format_aux1
[function]
[call site]
04525
skip_aux
[function]
[call site]
04526
kputsn
[function]
[call site]
04527
ks_resize
[function]
[call site]
04528
kputc_
[function]
[call site]
04529
kputc_
[function]
[call site]
04530
kputc_
[function]
[call site]
04531
kputsn
[function]
[call site]
04532
kputc_
[function]
[call site]
04533
kputc_
[function]
[call site]
04534
kputc_
[function]
[call site]
04535
kputc
[function]
[call site]
04536
bgzf_flush_try
[function]
[call site]
04537
bgzf_write
[function]
[call site]
04538
hwrite
[function]
[call site]
04539
__errno_location
[call site]
04540
bam_destroy1
[function]
[call site]
04541
sam_hdr_destroy
[function]
[call site]
04542
hts_close_or_abort
[function]
[call site]
04543
hts_close
[function]
[call site]
04544
hts_close
[function]
[call site]
04545
view_sam
[function]
[call site]
04546
view_sam
[function]
[call site]
04547
view_vcf
[function]
[call site]
04548
abort
[call site]
04549
hopen
[function]
[call site]
04550
hts_hopen
[function]
[call site]
04551
hclose
[function]
[call site]
04552
abort
[call site]
04553
hts_open
[function]
[call site]
04554
abort
[call site]
04555
bcf_hdr_read
[function]
[call site]
04556
vcf_hdr_read
[function]
[call site]
04557
bcf_hdr_init
[function]
[call site]
04558
calloc
[call site]
04559
kh_init_vdict
[function]
[call site]
04560
calloc
[call site]
04561
kh_resize_vdict
[function]
[call site]
04562
realloc
[call site]
04563
__ac_FNV1a_hash_string
[function]
[call site]
04564
calloc
[call site]
04565
kh_init_hdict
[function]
[call site]
04566
strchr
[call site]
04567
bcf_hdr_append
[function]
[call site]
04568
bcf_hdr_parse_line
[function]
[call site]
04569
calloc
[call site]
04570
isalpha_c
[function]
[call site]
04571
isalnum_c
[function]
[call site]
04572
bcf_hrec_add_key
[function]
[call site]
04573
is_escaped
[function]
[call site]
04577
hts_strprint
[function]
[call site]
04578
hts_log
[function]
[call site]
04579
bcf_hrec_set_val
[function]
[call site]
04580
__errno_location
[call site]
04581
__errno_location
[call site]
04582
hts_log
[function]
[call site]
04583
isspace_c
[function]
[call site]
04584
hts_strprint
[function]
[call site]
04585
hts_log
[function]
[call site]
04586
bcf_hrec_destroy
[function]
[call site]
04587
hts_strprint
[function]
[call site]
04588
hts_log
[function]
[call site]
04589
bcf_hrec_destroy
[function]
[call site]
04590
bcf_hdr_add_hrec
[function]
[call site]
04591
get_hdr_aux
[function]
[call site]
04592
bcf_hrec_check
[function]
[call site]
04593
bcf_hrec_set_type
[function]
[call site]
04594
strcmp
[call site]
04595
strcmp
[call site]
04596
strcmp
[call site]
04597
strcmp
[call site]
04598
bcf_hrec_find_key
[function]
[call site]
04599
strcasecmp
[call site]
04600
bcf_hrec_find_key
[function]
[call site]
04601
strcmp
[call site]
04602
bcf_hrec_find_key
[function]
[call site]
04603
hts_log
[function]
[call site]
04604
hts_log
[function]
[call site]
04605
hts_log
[function]
[call site]
04606
bcf_hdr_register_hrec
[function]
[call site]
04607
bcf_hrec_set_type
[function]
[call site]
04608
bcf_hrec_find_key
[function]
[call site]
04609
strtoll
[call site]
04610
bcf_hrec_find_key
[function]
[call site]
04611
strdup
[call site]
04612
kh_get_vdict
[function]
[call site]
04613
strcmp
[call site]
04614
kh_put_vdict
[function]
[call site]
04615
kh_resize_vdict
[function]
[call site]
04616
bcf_hrec_find_key
[function]
[call site]
04617
strtol
[call site]
04618
kh_del_vdict
[function]
[call site]
04619
hts_log
[function]
[call site]
04620
bcf_hdr_set_idx
[function]
[call site]
04621
hts_log
[function]
[call site]
04622
__errno_location
[call site]
04623
hts_resize_array_
[function]
[call site]
04624
hts_log
[function]
[call site]
04625
__errno_location
[call site]
04626
realloc
[call site]
04627
__errno_location
[call site]
04628
__errno_location
[call site]
04629
strerror
[call site]
04630
hts_log
[function]
[call site]
04631
__errno_location
[call site]
04632
abort
[call site]
04633
abort
[call site]
04634
kh_del_vdict
[function]
[call site]
04635
hrec_add_idx
[function]
[call site]
04636
realloc
[call site]
04637
realloc
[call site]
04638
strdup
[call site]
04639
kputw
[function]
[call site]
04640
strcmp
[call site]
04641
strcmp
[call site]
04642
strtol
[call site]
04643
hts_log
[function]
[call site]
04644
strcmp
[call site]
04645
strcmp
[call site]
04646
strcmp
[call site]
04647
strcmp
[call site]
04648
strcmp
[call site]
04649
strcmp
[call site]
04650
hts_log
[function]
[call site]
04651
strcmp
[call site]
04652
strcmp
[call site]
04653
strcmp
[call site]
04654
strcmp
[call site]
04655
strcmp
[call site]
04656
strcmp
[call site]
04657
strcmp
[call site]
04658
strcmp
[call site]
04659
strcmp
[call site]
04660
strcmp
[call site]
04661
__isoc99_sscanf
[call site]
04662
hts_log
[function]
[call site]
04663
hts_log
[function]
[call site]
04664
hts_log
[function]
[call site]
04665
strdup
[call site]
04666
kh_get_vdict
[function]
[call site]
04667
hrec_add_idx
[function]
[call site]
04668
kh_put_vdict
[function]
[call site]
04669
bcf_hdr_set_idx
[function]
[call site]
04670
kh_del_vdict
[function]
[call site]
04671
hrec_add_idx
[function]
[call site]
04672
bcf_hrec_destroy
[function]
[call site]
04673
ksprintf
[function]
[call site]
04674
kh_get_hdict
[function]
[call site]
04675
__ac_FNV1a_hash_string
[function]
[call site]
04676
bcf_hrec_destroy
[function]
[call site]
04677
strcmp
[call site]
04678
bcf_get_version
[function]
[call site]
04679
get_hdr_aux
[function]
[call site]
04680
bcf_hdr_get_version
[function]
[call site]
04681
bcf_hdr_get_hrec
[function]
[call site]
04682
ksprintf
[function]
[call site]
04683
get_hdr_aux
[function]
[call site]
04684
kh_get_hdict
[function]
[call site]
04685
strcmp
[call site]
04686
strcmp
[call site]
04687
ksprintf
[function]
[call site]
04688
get_hdr_aux
[function]
[call site]
04689
kh_get_hdict
[function]
[call site]
04690
strcmp
[call site]
04691
bcf_hrec_find_key
[function]
[call site]
04692
strcmp
[call site]
04693
kh_get_vdict
[function]
[call site]
04694
hts_log
[function]
[call site]
04695
strstr
[call site]
04696
strchr
[call site]
04697
strtol
[call site]
04698
__errno_location
[call site]
04699
__errno_location
[call site]
04700
strtol
[call site]
04701
__errno_location
[call site]
04702
__errno_location
[call site]
04703
bcf_hrec_find_key
[function]
[call site]
04704
ksprintf
[function]
[call site]
04705
kh_get_hdict
[function]
[call site]
04706
bcf_hrec_destroy
[function]
[call site]
04707
realloc
[call site]
04708
bcf_hdr_unregister_hrec
[function]
[call site]
04709
bcf_hrec_find_key
[function]
[call site]
04710
kh_get_vdict
[function]
[call site]
04711
kh_put_hdict
[function]
[call site]
04712
kh_resize_hdict
[function]
[call site]
04713
bcf_hdr_append
[function]
[call site]
04714
kh_destroy_vdict
[function]
[call site]
04715
hts_log
[function]
[call site]
04716
hts_getline
[function]
[call site]
04717
hts_log
[function]
[call site]
04718
hopen
[function]
[call site]
04719
hts_log
[function]
[call site]
04720
khgetline
[function]
[call site]
04721
strchr
[call site]
04722
kputs
[function]
[call site]
04723
kputsn
[function]
[call site]
04724
kputs
[function]
[call site]
04725
atol
[call site]
04726
kputl
[function]
[call site]
04727
kputll
[function]
[call site]
04728
kputsn
[function]
[call site]
04729
hclose
[function]
[call site]
04730
kputsn
[function]
[call site]
04731
kputc
[function]
[call site]
04732
hts_log
[function]
[call site]
04733
bcf_hdr_parse
[function]
[call site]
04734
bcf_hdr_parse_line
[function]
[call site]
04735
strcasecmp
[call site]
04736
hts_log
[function]
[call site]
04737
bcf_hdr_add_hrec
[function]
[call site]
04738
bcf_hrec_destroy
[function]
[call site]
04739
bcf_hdr_parse_line
[function]
[call site]
04740
bcf_hdr_add_hrec
[function]
[call site]
04741
bcf_hrec_destroy
[function]
[call site]
04742
bcf_hdr_parse_line
[function]
[call site]
04743
bcf_hdr_add_hrec
[function]
[call site]
04744
bcf_hrec_destroy
[function]
[call site]
04745
__assert_fail
[call site]
04746
__errno_location
[call site]
04747
strerror
[call site]
04748
hts_log
[function]
[call site]
04749
strncmp
[call site]
04750
strchr
[call site]
04751
hts_strprint
[function]
[call site]
04752
hts_log
[function]
[call site]
04753
hts_log
[function]
[call site]
04754
bcf_hdr_parse_sample_line
[function]
[call site]
04755
strlen
[call site]
04756
strncmp
[call site]
04757
hts_log
[function]
[call site]
04758
strlen
[call site]
04759
strncmp
[call site]
04760
hts_log
[function]
[call site]
04761
bcf_hdr_add_sample_len
[function]
[call site]
04762
isspace_c
[function]
[call site]
04763
hts_log
[function]
[call site]
04764
kh_put_vdict
[function]
[call site]
04765
hts_log
[function]
[call site]
04766
bcf_hdr_sync
[function]
[call site]
04767
realloc
[call site]
04768
get_hdr_aux
[function]
[call site]
04769
bcf_hdr_check_sanity
[function]
[call site]
04770
bcf_get_version
[function]
[call site]
04771
bcf_hdr_id2int
[function]
[call site]
04772
kh_get_vdict
[function]
[call site]
04773
atoi
[call site]
04774
hts_log
[function]
[call site]
04775
hts_log
[function]
[call site]
04776
bcf_hdr_id2int
[function]
[call site]
04777
atoi
[call site]
04778
hts_log
[function]
[call site]
04779
hts_log
[function]
[call site]
04780
tbx_index_load3
[function]
[call site]
04781
index_load
[function]
[call site]
04782
calloc
[call site]
04783
hts_idx_load3
[function]
[call site]
04784
idx_find_and_load
[function]
[call site]
04785
strstr
[call site]
04786
strdup
[call site]
04787
__errno_location
[call site]
04788
strerror
[call site]
04789
hts_log
[function]
[call site]
04790
hts_idx_load3
[function]
[call site]
04791
hisremote
[function]
[call site]
04792
stat
[call site]
04793
hts_log
[function]
[call site]
04794
idx_test_and_fetch
[function]
[call site]
04795
hisremote
[function]
[call site]
04796
strncmp
[call site]
04797
strcspn
[call site]
04798
kputsn
[function]
[call site]
04799
access
[call site]
04800
hopen
[function]
[call site]
04801
hts_log
[function]
[call site]
04802
hts_detect_format2
[function]
[call site]
04803
hts_log
[function]
[call site]
04804
hts_log
[function]
[call site]
04805
hts_open_tmpfile
[function]
[call site]
04806
hts_log
[function]
[call site]
04807
hts_log
[function]
[call site]
04808
calloc
[call site]
04809
__errno_location
[call site]
04810
strerror
[call site]
04811
hts_log
[function]
[call site]
04812
hread
[function]
[call site]
04813
hwrite
[function]
[call site]
04814
__errno_location
[call site]
04815
strerror
[call site]
04816
hts_log
[function]
[call site]
04817
hts_log
[function]
[call site]
04818
hclose
[function]
[call site]
04819
__errno_location
[call site]
04820
strerror
[call site]
04821
hts_log
[function]
[call site]
04822
rename
[call site]
04823
__errno_location
[call site]
04824
strerror
[call site]
04825
hts_log
[function]
[call site]
04826
ks_clear
[function]
[call site]
04827
hclose
[function]
[call site]
04828
hts_log
[function]
[call site]
04829
hopen
[function]
[call site]
04830
hclose_abruptly
[function]
[call site]
04831
strlen
[call site]
04832
__errno_location
[call site]
04833
hclose_abruptly
[function]
[call site]
04834
hclose_abruptly
[function]
[call site]
04835
unlink
[call site]
04836
__errno_location
[call site]
04837
strdup
[call site]
04838
idx_read
[function]
[call site]
04839
bgzf_open
[function]
[call site]
04840
ed_is_big
[function]
[call site]
04841
bgzf_read
[function]
[call site]
04842
memcmp
[call site]
04843
bgzf_read
[function]
[call site]
04844
ed_swap_4p
[function]
[call site]
04845
bgzf_read
[function]
[call site]
04846
bgzf_read
[function]
[call site]
04847
ed_swap_4p
[function]
[call site]
04848
hts_idx_init
[function]
[call site]
04849
idx_read_core
[function]
[call site]
04853
ed_is_big
[function]
[call site]
04854
kh_init_bin
[function]
[call site]
04855
bgzf_read
[function]
[call site]
04856
ed_swap_4p
[function]
[call site]
04857
bgzf_read
[function]
[call site]
04858
ed_swap_4p
[function]
[call site]
04859
kh_put_bin
[function]
[call site]
04860
bgzf_read
[function]
[call site]
04861
ed_swap_8p
[function]
[call site]
04862
bgzf_read
[function]
[call site]
04863
ed_swap_4p
[function]
[call site]
04864
bgzf_read
[function]
[call site]
04865
swap_bins
[function]
[call site]
04866
ed_swap_8p
[function]
[call site]
04867
ed_swap_8p
[function]
[call site]
04868
bgzf_read
[function]
[call site]
04869
ed_swap_4p
[function]
[call site]
04870
bgzf_read
[function]
[call site]
04871
ed_swap_8p
[function]
[call site]
04872
update_loff
[function]
[call site]
04873
hts_bin_bot
[function]
[call site]
04874
hts_bin_level
[function]
[call site]
04875
bgzf_read
[function]
[call site]
04876
ed_swap_8p
[function]
[call site]
04877
memcmp
[call site]
04878
bgzf_read
[function]
[call site]
04879
le_to_u32
[function]
[call site]
04880
hts_idx_init
[function]
[call site]
04881
le_to_u32
[function]
[call site]
04882
bgzf_read
[function]
[call site]
04883
idx_read_core
[function]
[call site]
04884
memcmp
[call site]
04885
bgzf_read
[function]
[call site]
04886
ed_swap_4p
[function]
[call site]
04887
hts_idx_init
[function]
[call site]
04888
idx_read_core
[function]
[call site]
04889
__errno_location
[call site]
04890
bgzf_close
[function]
[call site]
04891
bgzf_close
[function]
[call site]
04892
hts_idx_destroy
[function]
[call site]
04893
__errno_location
[call site]
04894
strerror
[call site]
04895
hts_log
[function]
[call site]
04896
hts_idx_check_local
[function]
[call site]
04897
hisremote
[function]
[call site]
04898
strlen
[call site]
04899
strncmp
[call site]
04900
strncmp
[call site]
04901
hts_log
[function]
[call site]
04902
strlen
[call site]
04903
calloc
[call site]
04904
strcpy
[call site]
04905
stat
[call site]
04906
strcpy
[call site]
04907
stat
[call site]
04908
strcpy
[call site]
04909
stat
[call site]
04910
strcpy
[call site]
04911
stat
[call site]
04912
strcpy
[call site]
04913
stat
[call site]
04914
strcpy
[call site]
04915
stat
[call site]
04916
strcpy
[call site]
04917
stat
[call site]
04918
strcpy
[call site]
04919
stat
[call site]
04920
strcpy
[call site]
04921
strcmp
[call site]
04922
strcmp
[call site]
04923
strcpy
[call site]
04924
stat
[call site]
04925
strcpy
[call site]
04926
stat
[call site]
04927
hisremote
[function]
[call site]
04928
idx_filename
[function]
[call site]
04929
haddextension
[function]
[call site]
04930
find_scheme_handler
[function]
[call site]
04931
strncmp
[call site]
04932
strcspn
[call site]
04933
strchr
[call site]
04934
strip_extension
[function]
[call site]
04935
kputsn
[function]
[call site]
04936
kputs
[function]
[call site]
04937
kputs
[function]
[call site]
04938
idx_test_and_fetch
[function]
[call site]
04939
haddextension
[function]
[call site]
04940
idx_test_and_fetch
[function]
[call site]
04941
idx_filename
[function]
[call site]
04942
idx_filename
[function]
[call site]
04943
idx_filename
[function]
[call site]
04944
idx_filename
[function]
[call site]
04945
idx_filename
[function]
[call site]
04946
hts_log
[function]
[call site]
04947
hts_idx_load3
[function]
[call site]
04948
idx_read
[function]
[call site]
04949
hts_idx_get_meta
[function]
[call site]
04950
le_to_i32
[function]
[call site]
04951
le_to_i32
[function]
[call site]
04952
le_to_i32
[function]
[call site]
04953
le_to_i32
[function]
[call site]
04954
le_to_i32
[function]
[call site]
04955
le_to_i32
[function]
[call site]
04956
le_to_u32
[function]
[call site]
04957
get_tid
[function]
[call site]
04958
kh_init_s2i
[function]
[call site]
04959
kh_put_s2i
[function]
[call site]
04960
strdup
[call site]
04961
kh_del_s2i
[function]
[call site]
04962
kh_get_s2i
[function]
[call site]
04963
__errno_location
[call site]
04964
strerror
[call site]
04965
hts_log
[function]
[call site]
04966
strlen
[call site]
04967
hts_log
[function]
[call site]
04968
tbx_destroy
[function]
[call site]
04969
hts_idx_destroy
[function]
[call site]
04970
kh_destroy_s2i
[function]
[call site]
04971
tbx_seqnames
[function]
[call site]
04972
calloc
[call site]
04973
calloc
[call site]
04974
__assert_fail
[call site]
04975
__assert_fail
[call site]
04976
bcf_hdr_get_hrec
[function]
[call site]
04977
add_missing_contig_hrec
[function]
[call site]
04978
calloc
[call site]
04979
strdup
[call site]
04980
bcf_hrec_add_key
[function]
[call site]
04981
strlen
[call site]
04982
bcf_hrec_set_val
[function]
[call site]
04983
bcf_hdr_add_hrec
[function]
[call site]
04984
__errno_location
[call site]
04985
__errno_location
[call site]
04986
strerror
[call site]
04987
hts_log
[function]
[call site]
04988
bcf_hrec_destroy
[function]
[call site]
04989
__errno_location
[call site]
04990
bcf_hdr_sync
[function]
[call site]
04991
tbx_destroy
[function]
[call site]
04992
tbx_destroy
[function]
[call site]
04993
bcf_hdr_destroy
[function]
[call site]
04994
get_hdr_aux
[function]
[call site]
04995
kh_destroy_hdict
[function]
[call site]
04996
kh_destroy_vdict
[function]
[call site]
04997
bcf_hrec_destroy
[function]
[call site]
04998
hts_log
[function]
[call site]
04999
__assert_fail
[call site]
05000
bcf_hdr_init
[function]
[call site]
05001
hts_log
[function]
[call site]
05002
bgzf_read
[function]
[call site]
05003
hts_log
[function]
[call site]
05004
bcf_hdr_destroy
[function]
[call site]
05005
strncmp
[call site]
05006
strncmp
[call site]
05007
hts_log
[function]
[call site]
05008
hts_log
[function]
[call site]
05009
bcf_hdr_destroy
[function]
[call site]
05010
bgzf_read
[function]
[call site]
05011
__errno_location
[call site]
05012
__errno_location
[call site]
05013
bgzf_read
[function]
[call site]
05014
bcf_hdr_parse
[function]
[call site]
05015
bcf_hdr_incr_ref
[function]
[call site]
05016
get_hdr_aux
[function]
[call site]
05017
bgzf_set_private_data
[function]
[call site]
05018
__assert_fail
[call site]
05019
hdr_bgzf_private_data_cleanup
[function]
[call site]
05020
bcf_hdr_decr_ref
[function]
[call site]
05021
get_hdr_aux
[function]
[call site]
05022
bcf_hdr_destroy
[function]
[call site]
05023
hts_log
[function]
[call site]
05024
bcf_hdr_destroy
[function]
[call site]
05025
hts_close_or_abort
[function]
[call site]
05026
hts_close
[function]
[call site]
05027
bcf_hdr_write
[function]
[call site]
05028
__errno_location
[call site]
05029
bcf_hdr_sync
[function]
[call site]
05030
vcf_hdr_write
[function]
[call site]
05031
bcf_hdr_format
[function]
[call site]
05032
_bcf_hrec_format
[function]
[call site]
05033
ksprintf
[function]
[call site]
05034
strcmp
[call site]
05035
kputc
[function]
[call site]
05036
ksprintf
[function]
[call site]
05037
ksprintf
[function]
[call site]
05038
ksprintf
[function]
[call site]
05039
ksprintf
[function]
[call site]
05040
ksprintf
[function]
[call site]
05041
ksprintf
[function]
[call site]
05042
ksprintf
[function]
[call site]
05043
bgzf_write
[function]
[call site]
05044
bgzf_flush
[function]
[call site]
05045
hwrite
[function]
[call site]
05046
bcf_hdr_format
[function]
[call site]
05047
kputc
[function]
[call site]
05048
bgzf_write
[function]
[call site]
05049
u32_to_le
[function]
[call site]
05050
bgzf_write
[function]
[call site]
05051
bgzf_write
[function]
[call site]
05052
bgzf_flush
[function]
[call site]
05053
bcf_hdr_incr_ref
[function]
[call site]
05054
bgzf_set_private_data
[function]
[call site]
05055
hdr_bgzf_private_data_cleanup
[function]
[call site]
05056
bcf_init
[function]
[call site]
05057
calloc
[call site]
05058
bcf_read
[function]
[call site]
05059
vcf_read
[function]
[call site]
05060
hts_getline
[function]
[call site]
05061
vcf_parse
[function]
[call site]
05062
ks_resize
[function]
[call site]
05063
bcf_clear
[function]
[call site]
05064
bcf_float_set
[function]
[call site]
05065
kstrtok
[function]
[call site]
05066
kh_get_vdict
[function]
[call site]
05067
hts_log
[function]
[call site]
05068
fix_chromosome
[function]
[call site]
05069
ksprintf
[function]
[call site]
05070
bcf_hdr_parse_line
[function]
[call site]
05071
bcf_hdr_add_hrec
[function]
[call site]
05072
bcf_hrec_destroy
[function]
[call site]
05073
bcf_hdr_sync
[function]
[call site]
05074
kh_get_vdict
[function]
[call site]
05075
hts_log
[function]
[call site]
05076
kstrtok
[function]
[call site]
05077
hts_str2uint
[function]
[call site]
05078
hts_log
[function]
[call site]
05079
hts_log
[function]
[call site]
05080
kstrtok
[function]
[call site]
05081
memcmp
[call site]
05082
bcf_enc_vchar
[function]
[call site]
05083
bcf_enc_size
[function]
[call site]
05084
ks_resize
[function]
[call site]
05085
ks_resize
[function]
[call site]
05086
i16_to_le
[function]
[call site]
05087
i32_to_le
[function]
[call site]
05088
kputsn
[function]
[call site]
05089
bcf_enc_size
[function]
[call site]
05090
kstrtok
[function]
[call site]
05091
bcf_enc_vchar
[function]
[call site]
05092
kstrtok
[function]
[call site]
05093
memcmp
[call site]
05094
bcf_seqname_safe
[function]
[call site]
05095
bcf_seqname
[function]
[call site]
05096
bcf_hdr_id2name
[function]
[call site]
05097
hts_log
[function]
[call site]
05098
bcf_enc_vchar
[function]
[call site]
05099
kstrtok
[function]
[call site]
05100
memcmp
[call site]
05101
atof
[call site]
05102
bcf_float_set
[function]
[call site]
05103
kstrtok
[function]
[call site]
05104
memcmp
[call site]
05105
vcf_parse_filter
[function]
[call site]
05106
bcf_seqname_safe
[function]
[call site]
05107
hts_log
[function]
[call site]
05108
kstrtok
[function]
[call site]
05109
kh_get_vdict
[function]
[call site]
05110
hts_log
[function]
[call site]
05111
ksprintf
[function]
[call site]
05112
bcf_hdr_parse_line
[function]
[call site]
05113
bcf_hdr_add_hrec
[function]
[call site]
05114
bcf_hrec_destroy
[function]
[call site]
05115
bcf_hdr_sync
[function]
[call site]
05116
kh_get_vdict
[function]
[call site]
05117
bcf_seqname_safe
[function]
[call site]
05118
hts_log
[function]
[call site]
05119
bcf_enc_vint
[function]
[call site]
05120
bcf_enc_size
[function]
[call site]
05121
bcf_enc_int1
[function]
[call site]
05122
ks_resize
[function]
[call site]
05123
i16_to_le
[function]
[call site]
05124
i32_to_le
[function]
[call site]
05125
bcf_enc_size
[function]
[call site]
05126
ks_resize
[function]
[call site]
05127
bcf_enc_size
[function]
[call site]
05128
ks_resize
[function]
[call site]
05129
i16_to_le
[function]
[call site]
05130
bcf_enc_size
[function]
[call site]
05131
ks_resize
[function]
[call site]
05132
i32_to_le
[function]
[call site]
05133
bcf_enc_vint
[function]
[call site]
05134
kstrtok
[function]
[call site]
05135
memcmp
[call site]
05136
vcf_parse_info
[function]
[call site]
05137
bcf_seqname_safe
[function]
[call site]
05138
hts_log
[function]
[call site]
05139
kh_get_vdict
[function]
[call site]
05140
ksprintf
[function]
[call site]
05141
bcf_hdr_parse_line
[function]
[call site]
05142
bcf_hdr_add_hrec
[function]
[call site]
05143
bcf_hrec_destroy
[function]
[call site]
05144
bcf_hdr_sync
[function]
[call site]
05145
kh_get_vdict
[function]
[call site]
05146
bcf_seqname_safe
[function]
[call site]
05147
hts_log
[function]
[call site]
05148
bcf_enc_int1
[function]
[call site]
05149
bcf_enc_size
[function]
[call site]
05150
bcf_enc_vchar
[function]
[call site]
05151
realloc
[call site]
05152
bcf_seqname_safe
[function]
[call site]
05153
hts_log
[function]
[call site]
05154
hts_str2int
[function]
[call site]
05155
bcf_seqname_safe
[function]
[call site]
05156
hts_log
[function]
[call site]
05157
bcf_enc_int1
[function]
[call site]
05158
bcf_enc_vint
[function]
[call site]
05159
memcmp
[call site]
05160
bcf_seqname_safe
[function]
[call site]
05161
hts_log
[function]
[call site]
05162
hts_str2dbl
[function]
[call site]
05163
bcf_float_set
[function]
[call site]
05164
bcf_enc_vfloat
[function]
[call site]
05165
__assert_fail
[call site]
05166
bcf_enc_size
[function]
[call site]
05167
serialize_float_array
[function]
[call site]
05168
ks_resize
[function]
[call site]
05169
float_to_le
[function]
[call site]
05170
kstrtok
[function]
[call site]
05171
vcf_parse_format
[function]
[call site]
05172
vcf_parse_format_empty1
[function]
[call site]
05173
bcf_seqname_safe
[function]
[call site]
05174
hts_log
[function]
[call site]
05175
vcf_parse_format_dict2
[function]
[call site]
05176
kstrtok
[function]
[call site]
05177
bcf_seqname_safe
[function]
[call site]
05178
hts_log
[function]
[call site]
05179
kh_get_vdict
[function]
[call site]
05180
bcf_seqname_safe
[function]
[call site]
05181
hts_log
[function]
[call site]
05182
bcf_seqname_safe
[function]
[call site]
05183
hts_log
[function]
[call site]
05184
ksprintf
[function]
[call site]
05185
bcf_hdr_parse_line
[function]
[call site]
05186
bcf_hdr_add_hrec
[function]
[call site]
05187
bcf_hrec_destroy
[function]
[call site]
05188
bcf_hdr_sync
[function]
[call site]
05189
kh_get_vdict
[function]
[call site]
05190
bcf_seqname_safe
[function]
[call site]
05191
hts_log
[function]
[call site]
05192
vcf_parse_format_max3
[function]
[call site]
05193
hts_log
[function]
[call site]
05194
vcf_parse_format_alloc4
[function]
[call site]
05195
bcf_seqname_safe
[function]
[call site]
05196
hts_log
[function]
[call site]
05197
align_mem
[function]
[call site]
05198
kputsn
[function]
[call site]
05199
bcf_seqname_safe
[function]
[call site]
05200
hts_log
[function]
[call site]
05201
bcf_seqname_safe
[function]
[call site]
05202
hts_log
[function]
[call site]
05203
ks_resize
[function]
[call site]
05204
bcf_seqname_safe
[function]
[call site]
05205
hts_log
[function]
[call site]
05206
bcf_seqname_safe
[function]
[call site]
05207
hts_log
[function]
[call site]
05208
vcf_parse_format_fill5
[function]
[call site]
05209
bcf_get_version
[function]
[call site]
05210
bcf_seqname_safe
[function]
[call site]
05211
hts_log
[function]
[call site]
05212
hts_str2uint
[function]
[call site]
05213
bcf_seqname_safe
[function]
[call site]
05214
hts_log
[function]
[call site]
05215
bcf_seqname_safe
[function]
[call site]
05216
hts_log
[function]
[call site]
05217
hts_str2int
[function]
[call site]
05218
bcf_seqname_safe
[function]
[call site]
05219
hts_log
[function]
[call site]
05220
isdigit_c
[function]
[call site]
05221
bcf_float_set
[function]
[call site]
05222
hts_str2dbl
[function]
[call site]
05223
bcf_seqname
[function]
[call site]
05224
bcf_float_set
[function]
[call site]
05225
bcf_float_set
[function]
[call site]
05226
bcf_seqname_safe
[function]
[call site]
05227
hts_log
[function]
[call site]
05228
hts_strprint
[function]
[call site]
05229
bcf_seqname_safe
[function]
[call site]
05230
hts_log
[function]
[call site]
05231
bcf_float_set
[function]
[call site]
05232
bcf_float_set
[function]
[call site]
05233
vcf_parse_format_gt6
[function]
[call site]
05234
bcf_enc_int1
[function]
[call site]
05235
bcf_enc_size
[function]
[call site]
05236
kputsn
[function]
[call site]
05237
bcf_enc_vint
[function]
[call site]
05238
bcf_enc_size
[function]
[call site]
05239
serialize_float_array
[function]
[call site]
05240
bcf_seqname_safe
[function]
[call site]
05241
hts_log
[function]
[call site]
05242
vcf_parse_format_check7
[function]
[call site]
05243
bcf_seqname_safe
[function]
[call site]
05244
hts_log
[function]
[call site]
05245
bcf_seqname_safe
[function]
[call site]
05246
hts_log
[function]
[call site]
05247
get_rlen
[function]
[call site]
05248
bcf_hdr_id2int
[function]
[call site]
05249
svlen_on_ref_for_vcf_alt
[function]
[call site]
05250
strlen
[call site]
05251
memcmp
[call site]
05252
memcmp
[call site]
05253
memcmp
[call site]
05254
memcmp
[call site]
05255
strcmp
[call site]
05256
strcmp
[call site]
05257
strlen
[call site]
05258
bcf_dec_size
[function]
[call site]
05259
bcf_dec_typed_int1
[function]
[call site]
05260
bcf_dec_int1
[function]
[call site]
05261
le_to_i8
[function]
[call site]
05262
le_to_i16
[function]
[call site]
05263
le_to_i32
[function]
[call site]
05264
le_to_i64
[function]
[call site]
05265
le_to_u64
[function]
[call site]
05266
bcf_dec_size
[function]
[call site]
05267
svlen_on_ref_for_vcf_alt
[function]
[call site]
05268
strncmp
[call site]
05269
strncmp
[call site]
05270
bcf_dec_size
[function]
[call site]
05271
bcf_hdr_id2int
[function]
[call site]
05272
bcf_get_info
[function]
[call site]
05273
bcf_hdr_id2int
[function]
[call site]
05274
bcf_get_info_id
[function]
[call site]
05275
bcf_unpack
[function]
[call site]
05276
bcf_fmt_sized_array
[function]
[call site]
05277
bcf_dec_size
[function]
[call site]
05278
bcf_fmt_array
[function]
[call site]
05279
kputc_
[function]
[call site]
05280
memchr
[call site]
05281
kputsn
[function]
[call site]
05282
kputc
[function]
[call site]
05283
le_to_i8
[function]
[call site]
05284
kputc_
[function]
[call site]
05285
kputc
[function]
[call site]
05286
kputw
[function]
[call site]
05287
le_to_i16
[function]
[call site]
05288
kputc_
[function]
[call site]
05289
kputc
[function]
[call site]
05290
kputw
[function]
[call site]
05291
le_to_i32
[function]
[call site]
05292
kputc_
[function]
[call site]
05293
kputc
[function]
[call site]
05294
kputw
[function]
[call site]
05295
le_to_u32
[function]
[call site]
05296
kputc_
[function]
[call site]
05297
kputc
[function]
[call site]
05298
le_to_float
[function]
[call site]
05299
kputd
[function]
[call site]
05300
hts_log
[function]
[call site]
05301
exit
[call site]
05302
kputc_
[function]
[call site]
05303
hts_realloc_or_die
[function]
[call site]
05304
bcf_fmt_sized_array
[function]
[call site]
05305
kputc_
[function]
[call site]
05306
bcf_dec_size
[function]
[call site]
05307
hts_realloc_or_die
[function]
[call site]
05308
bcf_dec_int1
[function]
[call site]
05309
hts_realloc_or_die
[function]
[call site]
05310
bcf_unpack_info_core1
[function]
[call site]
05311
bcf_dec_typed_int1
[function]
[call site]
05312
bcf_dec_size
[function]
[call site]
05313
le_to_i16
[function]
[call site]
05314
le_to_i32
[function]
[call site]
05315
le_to_float
[function]
[call site]
05316
le_to_i64
[function]
[call site]
05317
hts_realloc_or_die
[function]
[call site]
05318
bcf_unpack_fmt_core1
[function]
[call site]
05319
bcf_dec_typed_int1
[function]
[call site]
05320
bcf_dec_size
[function]
[call site]
05321
bcf_get_info
[function]
[call site]
05322
bcf_dec_typed_int1
[function]
[call site]
05323
bcf_unpack_info_core1
[function]
[call site]
05324
bcf_unpack_info_core1
[function]
[call site]
05325
bcf_dec_size
[function]
[call site]
05326
bcf_hdr_id2int
[function]
[call site]
05327
bcf_get_fmt
[function]
[call site]
05328
bcf_hdr_id2int
[function]
[call site]
05329
bcf_get_fmt_id
[function]
[call site]
05330
bcf_unpack
[function]
[call site]
05331
bcf_dec_typed_int1
[function]
[call site]
05332
bcf_unpack_fmt_core1
[function]
[call site]
05333
bcf_dec_size
[function]
[call site]
05334
le_to_i8
[function]
[call site]
05335
le_to_i16
[function]
[call site]
05336
le_to_i32
[function]
[call site]
05337
le_to_i64
[function]
[call site]
05338
le_to_i8
[function]
[call site]
05339
le_to_i16
[function]
[call site]
05340
le_to_i32
[function]
[call site]
05341
le_to_i64
[function]
[call site]
05342
bgzf_get_private_data
[function]
[call site]
05343
__assert_fail
[call site]
05344
bcf_read1_core
[function]
[call site]
05345
bgzf_read
[function]
[call site]
05346
bcf_clear
[function]
[call site]
05347
le_to_u32
[function]
[call site]
05348
le_to_u32
[function]
[call site]
05349
ks_resize
[function]
[call site]
05350
ks_resize
[function]
[call site]
05351
le_to_i32
[function]
[call site]
05352
le_to_u32
[function]
[call site]
05353
le_to_i32
[function]
[call site]
05354
le_to_float
[function]
[call site]
05355
le_to_u16
[function]
[call site]
05356
le_to_u16
[function]
[call site]
05357
le_to_u32
[function]
[call site]
05358
bgzf_read
[function]
[call site]
05359
bgzf_read
[function]
[call site]
05360
bcf_record_check
[function]
[call site]
05361
bcf_get_version
[function]
[call site]
05362
bcf_hdr_id2int
[function]
[call site]
05363
hts_log
[function]
[call site]
05364
bcf_dec_size_safe
[function]
[call site]
05365
bcf_dec_typed_int1_safe
[function]
[call site]
05366
le_to_i16
[function]
[call site]
05367
le_to_i32
[function]
[call site]
05368
bcf_seqname_safe
[function]
[call site]
05369
get_type_name
[function]
[call site]
05370
hts_log
[function]
[call site]
05371
bcf_seqname_safe
[function]
[call site]
05372
hts_log
[function]
[call site]
05373
bcf_dec_size_safe
[function]
[call site]
05374
bcf_seqname_safe
[function]
[call site]
05375
get_type_name
[function]
[call site]
05376
bcf_dec_size_safe
[function]
[call site]
05377
bcf_seqname_safe
[function]
[call site]
05378
get_type_name
[function]
[call site]
05379
bcf_dec_int1
[function]
[call site]
05380
bcf_seqname_safe
[function]
[call site]
05381
hts_log
[function]
[call site]
05382
bcf_dec_typed_int1_safe
[function]
[call site]
05383
bcf_seqname_safe
[function]
[call site]
05384
hts_log
[function]
[call site]
05385
bcf_dec_size_safe
[function]
[call site]
05386
bcf_seqname_safe
[function]
[call site]
05387
get_type_name
[function]
[call site]
05388
hts_log
[function]
[call site]
05389
bcf_dec_typed_int1_safe
[function]
[call site]
05390
bcf_record_check_err
[function]
[call site]
05391
bcf_seqname_safe
[function]
[call site]
05392
hts_log
[function]
[call site]
05393
bcf_dec_size_safe
[function]
[call site]
05394
bcf_record_check_err
[function]
[call site]
05395
updatephasing
[function]
[call site]
05396
bcf_seqname_safe
[function]
[call site]
05397
hts_log
[function]
[call site]
05398
get_rlen
[function]
[call site]
05399
bcf_seqname_safe
[function]
[call site]
05400
hts_log
[function]
[call site]
05401
bcf_seqname_safe
[function]
[call site]
05402
hts_log
[function]
[call site]
05403
bcf_subset_format
[function]
[call site]
05404
hts_realloc_or_die
[function]
[call site]
05405
bcf_unpack_fmt_core1
[function]
[call site]
05406
bcf_write
[function]
[call site]
05407
bcf_hdr_sync
[function]
[call site]
05408
bcf_seqname_safe
[function]
[call site]
05409
hts_log
[function]
[call site]
05410
vcf_write
[function]
[call site]
05411
vcf_format
[function]
[call site]
05412
bcf_seqname
[function]
[call site]
05413
hts_log
[function]
[call site]
05414
__errno_location
[call site]
05415
bcf_unpack
[function]
[call site]
05416
get_hdr_aux
[function]
[call site]
05417
calloc
[call site]
05418
kputs
[function]
[call site]
05419
kputc_
[function]
[call site]
05420
kputll
[function]
[call site]
05421
kputc_
[function]
[call site]
05422
kputs
[function]
[call site]
05423
kputc_
[function]
[call site]
05424
kputs
[function]
[call site]
05425
kputc_
[function]
[call site]
05426
bcf_float_is_missing
[function]
[call site]
05427
kputd
[function]
[call site]
05428
kputc_
[function]
[call site]
05429
bcf_seqname_safe
[function]
[call site]
05430
hts_log
[function]
[call site]
05431
__errno_location
[call site]
05432
kputc_
[function]
[call site]
05433
strlen
[call site]
05434
kputsn
[function]
[call site]
05435
kputc_
[function]
[call site]
05436
kputc_
[function]
[call site]
05437
bcf_dec_typed_int1
[function]
[call site]
05438
bcf_dec_size
[function]
[call site]
05439
bcf_seqname_safe
[function]
[call site]
05440
hts_log
[function]
[call site]
05441
__errno_location
[call site]
05442
strlen
[call site]
05443
ks_resize
[function]
[call site]
05444
bcf_fmt_array
[function]
[call site]
05445
bcf_float_is_missing
[function]
[call site]
05446
kputc_
[function]
[call site]
05447
kputd
[function]
[call site]
05448
kputc_
[function]
[call site]
05449
kputc_
[function]
[call site]
05450
kputw
[function]
[call site]
05451
kputc_
[function]
[call site]
05452
kputll
[function]
[call site]
05453
bcf_seqname_safe
[function]
[call site]
05454
hts_log
[function]
[call site]
05455
__errno_location
[call site]
05456
kputc_
[function]
[call site]
05457
kputc_
[function]
[call site]
05458
bcf_dec_typed_int1
[function]
[call site]
05459
bcf_dec_size
[function]
[call site]
05460
kputc_
[function]
[call site]
05461
bcf_seqname_safe
[function]
[call site]
05462
hts_log
[function]
[call site]
05463
__errno_location
[call site]
05464
strlen
[call site]
05465
kputsn
[function]
[call site]
05466
kputsn
[function]
[call site]
05467
kputc_
[function]
[call site]
05468
kputc_
[function]
[call site]
05469
bcf_format_gt_v2
[function]
[call site]
05470
le_to_i8
[function]
[call site]
05471
kputc
[function]
[call site]
05472
kputw
[function]
[call site]
05473
le_to_i16
[function]
[call site]
05474
kputc
[function]
[call site]
05475
kputw
[function]
[call site]
05476
le_to_i32
[function]
[call site]
05477
kputc
[function]
[call site]
05478
kputw
[function]
[call site]
05479
kputc
[function]
[call site]
05480
hts_log
[function]
[call site]
05481
get_hdr_aux
[function]
[call site]
05482
kinsert_char
[function]
[call site]
05483
ks_resize
[function]
[call site]
05484
kinsert_char
[function]
[call site]
05485
kinsert_char
[function]
[call site]
05486
hts_log
[function]
[call site]
05487
__errno_location
[call site]
05488
bcf_fmt_array1
[function]
[call site]
05489
kputc_
[function]
[call site]
05490
kputc_
[function]
[call site]
05491
kputw
[function]
[call site]
05492
le_to_i16
[function]
[call site]
05493
kputc_
[function]
[call site]
05494
kputw
[function]
[call site]
05495
le_to_i32
[function]
[call site]
05496
kputc_
[function]
[call site]
05497
kputw
[function]
[call site]
05498
le_to_u32
[function]
[call site]
05499
kputc_
[function]
[call site]
05500
le_to_float
[function]
[call site]
05501
kputd
[function]
[call site]
05502
hts_log
[function]
[call site]
05503
bcf_fmt_array
[function]
[call site]
05504
kputc_
[function]
[call site]
05505
bcf_fmt_array1
[function]
[call site]
05506
bcf_fmt_array
[function]
[call site]
05507
kputc_
[function]
[call site]
05508
kputsn
[function]
[call site]
05509
kputc
[function]
[call site]
05510
bgzf_flush_try
[function]
[call site]
05511
hts_idx_amend_last
[function]
[call site]
05512
bgzf_write
[function]
[call site]
05513
hwrite
[function]
[call site]
05514
bcf_seqname_safe
[function]
[call site]
05515
hts_idx_tbi_name
[function]
[call site]
05516
strlen
[call site]
05517
realloc
[call site]
05518
strcpy
[call site]
05519
le_to_u32
[function]
[call site]
05520
u32_to_le
[function]
[call site]
05521
bgzf_idx_push
[function]
[call site]
05522
bcf_strerror
[function]
[call site]
05523
add_desc_to_buffer
[function]
[call site]
05524
add_desc_to_buffer
[function]
[call site]
05528
bcf_seqname_safe
[function]
[call site]
05529
bcf1_sync
[function]
[call site]
05530
bcf1_sync_id
[function]
[call site]
05531
strcmp
[call site]
05532
strlen
[call site]
05533
bcf_enc_vchar
[function]
[call site]
05534
bcf_enc_size
[function]
[call site]
05535
bcf1_sync_alleles
[function]
[call site]
05536
bcf1_sync_filter
[function]
[call site]
05540
bcf_enc_vint
[function]
[call site]
05541
bcf_enc_vint
[function]
[call site]
05542
bcf1_sync_info
[function]
[call site]
05543
kputsn_
[function]
[call site]
05544
bcf_unpack
[function]
[call site]
05545
bcf1_sync_id
[function]
[call site]
05546
kputsn_
[function]
[call site]
05547
bcf1_sync_alleles
[function]
[call site]
05548
kputsn_
[function]
[call site]
05549
strlen
[call site]
05550
bcf1_sync_filter
[function]
[call site]
05551
kputsn_
[function]
[call site]
05552
bcf_enc_vint
[function]
[call site]
05553
bcf1_sync_info
[function]
[call site]
05554
kputsn_
[function]
[call site]
05555
kputsn_
[function]
[call site]
05556
bcf_seqname_safe
[function]
[call site]
05557
hts_log
[function]
[call site]
05558
u32_to_le
[function]
[call site]
05559
u32_to_le
[function]
[call site]
05560
i32_to_le
[function]
[call site]
05561
u32_to_le
[function]
[call site]
05562
u32_to_le
[function]
[call site]
05563
float_to_le
[function]
[call site]
05564
u16_to_le
[function]
[call site]
05565
u16_to_le
[function]
[call site]
05566
u32_to_le
[function]
[call site]
05567
bgzf_write
[function]
[call site]
05568
bgzf_write
[function]
[call site]
05569
bgzf_write
[function]
[call site]
05570
bgzf_idx_push
[function]
[call site]
05571
bcf_destroy
[function]
[call site]
05572
bcf_empty
[function]
[call site]
05573
bcf_clear
[function]
[call site]
05574
bcf_hdr_destroy
[function]
[call site]
05575
hts_close_or_abort
[function]
[call site]
05576
hts_close
[function]
[call site]
05577
view_vcf
[function]
[call site]
05578