The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 234 | 4136 | hts_str2dbl | call site: 04136 | bam_sym_lookup |
| 142 | 1591 | hts_hopen | call site: 01591 | hts_process_opts |
| 114 | 4851 | idx_find_and_load | call site: 04851 | hts_idx_load3 |
| 104 | 1348 | bgzf_read_block | call site: 01348 | bgzf_index_dump |
| 102 | 3085 | ks_free | call site: 03085 | cram_get_ref |
| 79 | 2596 | zlib_mem_deflate | call site: 02596 | fqz_compress |
| 71 | 1518 | refs2id | call site: 01518 | hts_tpool_init |
| 67 | 2748 | rans_compress_to_4x16 | call site: 02748 | arith_compress_to |
| 64 | 4997 | idx_find_and_load | call site: 04997 | hts_idx_load3 |
| 63 | 1833 | sam_format1_append | call site: 01833 | hts_set_opt |
| 63 | 4016 | hts_realloc_ps | call site: 04016 | sam_parse_worker |
| 52 | 4550 | sam_write1 | call site: 04550 | fastq_format1 |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
realloc
[call site]
00024
__ac_FNV1a_hash_string
[function]
[call site]
00025
strcmp
[call site]
00026
__errno_location
[call site]
00027
strerror
[call site]
00028
hts_log
[function]
[call site]
00029
priority
[function]
[call site]
00030
hfile_add_scheme_handler
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
init_add_plugin
[function]
[call site]
00033
hts_log
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hfile_plugin_init_mem
[function]
[call site]
00037
hfile_add_scheme_handler
[function]
[call site]
00038
init_add_plugin
[function]
[call site]
00039
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00040
hfile_add_scheme_handler
[function]
[call site]
00041
init_add_plugin
[function]
[call site]
00042
hfile_plugin_init_libcurl
[function]
[call site]
00043
hts_version
[function]
[call site]
00044
curl_global_init
[call site]
00045
easy_errno
[function]
[call site]
00046
curl_easy_getinfo
[call site]
00047
curl_easy_getinfo
[call site]
00048
http_status_errno
[function]
[call site]
00049
curl_easy_strerror
[call site]
00050
hts_log
[function]
[call site]
00051
__errno_location
[call site]
00052
curl_share_init
[call site]
00053
curl_global_cleanup
[call site]
00054
__errno_location
[call site]
00055
curl_share_setopt
[call site]
00056
share_lock
[function]
[call site]
00057
pthread_mutex_lock
[call site]
00058
curl_share_setopt
[call site]
00059
share_unlock
[function]
[call site]
00060
pthread_mutex_unlock
[call site]
00061
curl_share_setopt
[call site]
00062
curl_share_cleanup
[call site]
00063
curl_global_cleanup
[call site]
00064
__errno_location
[call site]
00065
getenv
[call site]
00066
strdup
[call site]
00067
kh_init_auth_map
[function]
[call site]
00068
calloc
[call site]
00069
__errno_location
[call site]
00070
kh_destroy_auth_map
[function]
[call site]
00071
curl_share_cleanup
[call site]
00072
curl_global_cleanup
[call site]
00073
__errno_location
[call site]
00074
getenv
[call site]
00075
strcmp
[call site]
00076
getenv
[call site]
00077
atoi
[call site]
00078
getenv
[call site]
00079
atol
[call site]
00080
getenv
[call site]
00081
atol
[call site]
00082
getenv
[call site]
00083
atol
[call site]
00084
getenv
[call site]
00085
atol
[call site]
00086
curl_version_info
[call site]
00087
ksprintf
[function]
[call site]
00088
kvsprintf
[function]
[call site]
00089
kputd
[function]
[call site]
00090
kputsn
[function]
[call site]
00091
__errno_location
[call site]
00092
ks_resize
[function]
[call site]
00093
realloc
[call site]
00094
kputsn
[function]
[call site]
00095
kputc
[function]
[call site]
00096
ks_resize
[function]
[call site]
00097
ks_resize
[function]
[call site]
00098
snprintf
[call site]
00099
kputsn
[function]
[call site]
00100
vsnprintf
[call site]
00101
ks_resize
[function]
[call site]
00102
vsnprintf
[call site]
00103
hfile_add_scheme_handler
[function]
[call site]
00104
init_add_plugin
[function]
[call site]
00105
hfile_plugin_init_gcs
[function]
[call site]
00106
hfile_add_scheme_handler
[function]
[call site]
00107
hfile_add_scheme_handler
[function]
[call site]
00108
hfile_add_scheme_handler
[function]
[call site]
00109
init_add_plugin
[function]
[call site]
00110
hfile_plugin_init_s3
[function]
[call site]
00111
hts_version
[function]
[call site]
00112
curl_global_init
[call site]
00113
curl_share_init
[call site]
00114
curl_global_cleanup
[call site]
00115
__errno_location
[call site]
00116
curl_share_setopt
[call site]
00117
share_lock
[function]
[call site]
00118
pthread_mutex_lock
[call site]
00119
curl_share_setopt
[call site]
00120
share_unlock
[function]
[call site]
00121
pthread_mutex_unlock
[call site]
00122
curl_share_setopt
[call site]
00123
curl_share_cleanup
[call site]
00124
curl_global_cleanup
[call site]
00125
__errno_location
[call site]
00126
curl_version_info
[call site]
00127
ksprintf
[function]
[call site]
00128
hfile_add_scheme_handler
[function]
[call site]
00129
hfile_add_scheme_handler
[function]
[call site]
00130
hfile_add_scheme_handler
[function]
[call site]
00131
atexit
[call site]
00132
hfile_exit
[function]
[call site]
00133
hfile_shutdown
[function]
[call site]
00134
pthread_mutex_lock
[call site]
00135
kh_destroy_scheme_string
[function]
[call site]
00136
pthread_mutex_unlock
[call site]
00137
pthread_mutex_destroy
[call site]
00138
pthread_mutex_unlock
[call site]
00139
pthread_mutex_unlock
[call site]
00140
kh_get_scheme_string
[function]
[call site]
00141
strchr
[call site]
00142
strcmp
[call site]
00143
hopen_fd_stdinout
[function]
[call site]
00144
strchr
[call site]
00145
snprintf
[call site]
00146
hdopen
[function]
[call site]
00147
blksize
[function]
[call site]
00148
fstat
[call site]
00149
hfile_init
[function]
[call site]
00150
strchr
[call site]
00151
posix_memalign
[call site]
00152
strchr
[call site]
00153
hfile_destroy
[function]
[call site]
00154
__errno_location
[call site]
00155
__errno_location
[call site]
00156
strchr
[call site]
00157
strchr
[call site]
00158
hopen_fd
[function]
[call site]
00159
hfile_oflags
[function]
[call site]
00160
open
[call site]
00161
blksize
[function]
[call site]
00162
hfile_init
[function]
[call site]
00163
__errno_location
[call site]
00164
close
[call site]
00165
hfile_destroy
[function]
[call site]
00166
hts_hopen
[function]
[call site]
00167
calloc
[call site]
00168
strdup
[call site]
00169
ed_is_big
[function]
[call site]
00170
strchr
[call site]
00171
strncpy
[call site]
00172
strncpy
[call site]
00173
strchr
[call site]
00174
hts_detect_format2
[function]
[call site]
00175
hpeek
[function]
[call site]
00176
refill_buffer
[function]
[call site]
00177
__errno_location
[call site]
00178
memcmp
[call site]
00179
memcmp
[call site]
00180
decompress_peek_gz
[function]
[call site]
00181
hpeek
[function]
[call site]
00182
inflateInit2_
[call site]
00183
inflate
[call site]
00184
inflateReset
[call site]
00185
inflateEnd
[call site]
00186
memcmp
[call site]
00187
memcmp
[call site]
00188
memcmp
[call site]
00189
memcmp
[call site]
00190
decompress_peek_xz
[function]
[call site]
00191
hpeek
[function]
[call site]
00192
lzma_easy_decoder_memusage
[call site]
00193
lzma_stream_decoder
[call site]
00194
lzma_code
[call site]
00195
lzma_end
[call site]
00196
lzma_end
[call site]
00197
memcmp
[call site]
00198
hpeek
[function]
[call site]
00199
strcmp
[call site]
00200
find_file_extension
[function]
[call site]
00201
strstr
[call site]
00202
strlen
[call site]
00203
tolower_c
[function]
[call site]
00204
memcmp
[call site]
00205
memcmp
[call site]
00206
memcmp
[call site]
00207
memcmp
[call site]
00208
memcmp
[call site]
00209
memcmp
[call site]
00210
memcmp
[call site]
00211
strcmp
[call site]
00212
memcmp
[call site]
00213
parse_version
[function]
[call site]
00214
isdigit_c
[function]
[call site]
00215
__ctype_b_loc
[call site]
00216
isdigit_c
[function]
[call site]
00217
memcmp
[call site]
00218
memcmp
[call site]
00219
memcmp
[call site]
00220
memcmp
[call site]
00221
parse_version
[function]
[call site]
00222
memcmp
[call site]
00223
cmp_nonblank
[function]
[call site]
00224
isspace_c
[function]
[call site]
00225
__ctype_b_loc
[call site]
00226
memcmp
[call site]
00227
is_fastaq
[function]
[call site]
00228
is_fastaq
[function]
[call site]
00232
parse_tabbed_text
[function]
[call site]
00233
isdigit_c
[function]
[call site]
00234
strchr
[call site]
00235
isdigit_c
[function]
[call site]
00236
colmatch
[function]
[call site]
00237
colmatch
[function]
[call site]
00238
strstr
[call site]
00239
colmatch
[function]
[call site]
00240
strstr
[call site]
00241
colmatch
[function]
[call site]
00242
colmatch
[function]
[call site]
00243
is_text_only
[function]
[call site]
00244
__errno_location
[call site]
00245
hopen_htsget_redirect
[function]
[call site]
00246
hfile_init
[function]
[call site]
00247
parse_ga4gh_redirect_json
[function]
[call site]
00248
hts_json_fnext
[function]
[call site]
00249
hgetc
[function]
[call site]
00250
hgetc2
[function]
[call site]
00251
refill_buffer
[function]
[call site]
00252
fscan_string
[function]
[call site]
00253
hgetc
[function]
[call site]
00254
hgetc
[function]
[call site]
00255
kputc
[function]
[call site]
00256
kputc
[function]
[call site]
00257
kputc
[function]
[call site]
00258
kputc
[function]
[call site]
00259
kputc
[function]
[call site]
00260
kputc
[function]
[call site]
00261
hgetc
[function]
[call site]
00262
dehex
[function]
[call site]
00263
hgetc
[function]
[call site]
00264
dehex
[function]
[call site]
00265
hgetc
[function]
[call site]
00266
dehex
[function]
[call site]
00267
hgetc
[function]
[call site]
00268
dehex
[function]
[call site]
00269
encode_utf8
[function]
[call site]
00270
kputsn
[function]
[call site]
00271
kputc
[function]
[call site]
00272
kputsn
[function]
[call site]
00273
kputc
[function]
[call site]
00274
hpeek
[function]
[call site]
00275
strchr
[call site]
00276
hgetc
[function]
[call site]
00277
kputc
[function]
[call site]
00278
token_type
[function]
[call site]
00279
hts_json_fnext
[function]
[call site]
00283
strcmp
[call site]
00284
parse_ga4gh_body_json
[function]
[call site]
00285
hts_json_fnext
[function]
[call site]
00286
hts_json_fnext
[function]
[call site]
00287
strcmp
[call site]
00288
hts_json_fnext
[function]
[call site]
00289
hts_json_fnext
[function]
[call site]
00290
hts_realloc_or_die
[function]
[call site]
00291
__errno_location
[call site]
00292
realloc
[call site]
00293
__errno_location
[call site]
00294
strerror
[call site]
00295
hts_log
[function]
[call site]
00296
exit
[call site]
00297
hts_json_fnext
[function]
[call site]
00298
strcmp
[call site]
00299
hts_json_fnext
[function]
[call site]
00300
ks_release
[function]
[call site]
00301
strcmp
[call site]
00302
hts_json_fnext
[function]
[call site]
00303
hts_json_fnext
[function]
[call site]
00304
hts_json_fnext
[function]
[call site]
00305
kputs
[function]
[call site]
00306
__errno_location
[call site]
00307
strlen
[call site]
00308
kputsn
[function]
[call site]
00309
kputs
[function]
[call site]
00310
hts_realloc_or_die
[function]
[call site]
00311
ks_release
[function]
[call site]
00312
hts_json_fskip_value
[function]
[call site]
00313
skip_value
[function]
[call site]
00314
fnext
[function]
[call site]
00315
hts_json_fnext
[function]
[call site]
00316
strcmp
[call site]
00317
hts_json_fnext
[function]
[call site]
00318
hts_log
[function]
[call site]
00319
hts_json_fskip_value
[function]
[call site]
00320
hts_json_fnext
[function]
[call site]
00321
free_all_parts
[function]
[call site]
00322
free_part
[function]
[call site]
00323
hfile_destroy
[function]
[call site]
00324
__errno_location
[call site]
00325
hclose_abruptly
[function]
[call site]
00326
__errno_location
[call site]
00327
hfile_destroy
[function]
[call site]
00328
__errno_location
[call site]
00329
hts_crypt4gh_redirect
[function]
[call site]
00330
strlen
[call site]
00331
snprintf
[call site]
00332
strchr
[call site]
00333
snprintf
[call site]
00334
hopen
[function]
[call site]
00335
hts_detect_format2
[function]
[call site]
00336
strchr
[call site]
00337
strchr
[call site]
00338
strchr
[call site]
00339
strchr
[call site]
00340
strchr
[call site]
00341
strchr
[call site]
00342
strchr
[call site]
00343
strchr
[call site]
00344
abort
[call site]
00345
format_category
[function]
[call site]
00346
__errno_location
[call site]
00347
bgzf_hopen
[function]
[call site]
00348
strchr
[call site]
00349
bgzf_read_init
[function]
[call site]
00350
hpeek
[function]
[call site]
00351
calloc
[call site]
00352
hts_malloc_p
[function]
[call site]
00353
hts_prod_sat2
[function]
[call site]
00354
hts_malloc
[function]
[call site]
00355
__errno_location
[call site]
00356
memcmp
[call site]
00357
memcmp
[call site]
00358
hts_log
[function]
[call site]
00359
razf_info
[function]
[call site]
00360
strcmp
[call site]
00361
hseek
[function]
[call site]
00362
writebuffer_is_nonempty
[function]
[call site]
00363
flush_buffer
[function]
[call site]
00364
__errno_location
[call site]
00365
htell
[function]
[call site]
00366
__errno_location
[call site]
00367
__errno_location
[call site]
00368
__errno_location
[call site]
00369
hread
[function]
[call site]
00370
hread2
[function]
[call site]
00371
__errno_location
[call site]
00372
refill_buffer
[function]
[call site]
00373
ed_is_big
[function]
[call site]
00374
ed_swap_8p
[function]
[call site]
00375
ed_swap_8
[function]
[call site]
00376
hts_log
[function]
[call site]
00377
hts_log
[function]
[call site]
00378
__errno_location
[call site]
00379
kh_init_bgzf_cache
[function]
[call site]
00380
calloc
[call site]
00381
strchr
[call site]
00382
bgzf_write_init
[function]
[call site]
00383
calloc
[call site]
00384
mode2level
[function]
[call site]
00385
strchr
[call site]
00386
hts_malloc_p
[function]
[call site]
00387
strchr
[call site]
00388
calloc
[call site]
00389
deflateInit2_
[call site]
00390
bgzf_zerr
[function]
[call site]
00391
hts_log
[function]
[call site]
00395
__errno_location
[call site]
00396
strerror
[call site]
00397
hts_log
[function]
[call site]
00398
__errno_location
[call site]
00399
ed_is_big
[function]
[call site]
00400
cram_dopen
[function]
[call site]
00401
calloc
[call site]
00402
cram_read_file_def
[function]
[call site]
00403
hread
[function]
[call site]
00404
memcmp
[call site]
00405
hts_log
[function]
[call site]
00406
cram_init_tables
[function]
[call site]
00407
cram_init_varint
[function]
[call site]
00408
cram_read_SAM_hdr
[function]
[call site]
00409
int32_decode
[function]
[call site]
00410
hread
[function]
[call site]
00411
hread
[function]
[call site]
00412
cram_read_container
[function]
[call site]
00413
int32_decode
[function]
[call site]
00414
crc32
[call site]
00415
calloc
[call site]
00416
__errno_location
[call site]
00417
cram_free_container
[function]
[call site]
00418
cram_free_compression_header
[function]
[call site]
00419
kh_destroy_map
[function]
[call site]
00420
cram_free_block
[function]
[call site]
00421
kh_destroy_m_s2i
[function]
[call site]
00422
string_pool_destroy
[function]
[call site]
00423
cram_free_block
[function]
[call site]
00424
cram_free_slice
[function]
[call site]
00425
cram_free_block
[function]
[call site]
00426
cram_free_block
[function]
[call site]
00427
cram_free_block
[function]
[call site]
00428
cram_free_slice_header
[function]
[call site]
00429
cram_free_block
[function]
[call site]
00430
cram_free_block
[function]
[call site]
00431
cram_free_block
[function]
[call site]
00432
cram_free_block
[function]
[call site]
00433
cram_free_block
[function]
[call site]
00434
cram_free_block
[function]
[call site]
00435
string_pool_destroy
[function]
[call site]
00436
kh_destroy_m_s2i
[function]
[call site]
00437
kh_destroy_m_s2i
[function]
[call site]
00438
cram_free_slice
[function]
[call site]
00439
cram_stats_free
[function]
[call site]
00440
kh_destroy_m_i2i
[function]
[call site]
00441
cram_free_block
[function]
[call site]
00442
cram_free_block
[function]
[call site]
00443
kh_destroy_m_tagmap
[function]
[call site]
00444
free_bam_list
[function]
[call site]
00445
bam_destroy1
[function]
[call site]
00446
bam_get_mempolicy
[function]
[call site]
00447
bam_get_mempolicy
[function]
[call site]
00448
bam_get_mempolicy
[function]
[call site]
00449
hts_malloc_p
[function]
[call site]
00450
hts_prod_sat2
[function]
[call site]
00451
hts_malloc
[function]
[call site]
00452
__errno_location
[call site]
00453
cram_free_container
[function]
[call site]
00454
cram_free_container
[function]
[call site]
00455
int32_decode
[function]
[call site]
00456
cram_free_container
[function]
[call site]
00457
hts_log
[function]
[call site]
00458
cram_free_container
[function]
[call site]
00459
cram_free_container
[function]
[call site]
00460
cram_read_block
[function]
[call site]
00461
hgetc
[function]
[call site]
00462
hts_log
[function]
[call site]
00463
crc32
[call site]
00464
hgetc
[function]
[call site]
00465
crc32
[call site]
00466
hread
[function]
[call site]
00467
hread
[function]
[call site]
00468
int32_decode
[function]
[call site]
00469
cram_free_container
[function]
[call site]
00470
cram_uncompress_block
[function]
[call site]
00471
crc32
[call site]
00472
hts_log
[function]
[call site]
00473
__assert_fail
[call site]
00474
zlib_mem_inflate
[function]
[call site]
00475
inflateInit2_
[call site]
00476
hts_log
[function]
[call site]
00477
inflate
[call site]
00478
hts_log
[function]
[call site]
00479
inflateEnd
[call site]
00480
realloc
[call site]
00481
inflateEnd
[call site]
00482
inflateEnd
[call site]
00483
BZ2_bzBuffToBuffDecompress
[call site]
00484
lzma_mem_inflate
[function]
[call site]
00485
lzma_easy_decoder_memusage
[call site]
00486
lzma_stream_decoder
[call site]
00487
realloc
[call site]
00488
lzma_code
[call site]
00489
hts_log
[function]
[call site]
00490
lzma_code
[call site]
00491
hts_log
[function]
[call site]
00492
realloc
[call site]
00493
lzma_end
[call site]
00494
lzma_end
[call site]
00495
rans_uncompress
[function]
[call site]
00496
rans_uncompress_O1
[function]
[call site]
00497
htscodecs_tls_calloc
[function]
[call site]
00498
htscodecs_tls_alloc
[function]
[call site]
00499
pthread_once
[call site]
00500
htscodecs_tls_init
[function]
[call site]
00501
pthread_key_create
[call site]
00502
htscodecs_tls_free_all
[function]
[call site]
00503
fprintf
[call site]
00504
strerror
[call site]
00505
fprintf
[call site]
00506
pthread_getspecific
[call site]
00507
calloc
[call site]
00508
pthread_setspecific
[call site]
00509
fprintf
[call site]
00510
calloc
[call site]
00511
RansDecSymbolInit32
[function]
[call site]
00512
__assert_fail
[call site]
00513
__assert_fail
[call site]
00514
RansDecInit
[function]
[call site]
00515
RansDecInit
[function]
[call site]
00516
RansDecInit
[function]
[call site]
00517
RansDecInit
[function]
[call site]
00518
RansDecAdvanceStep
[function]
[call site]
00519
RansDecAdvanceStep
[function]
[call site]
00520
RansDecAdvanceStep
[function]
[call site]
00521
RansDecAdvanceStep
[function]
[call site]
00522
RansDecRenorm2
[function]
[call site]
00523
RansDecRenorm2
[function]
[call site]
00524
RansDecRenormSafe
[function]
[call site]
00525
RansDecRenormSafe
[function]
[call site]
00526
RansDecRenormSafe
[function]
[call site]
00527
RansDecRenormSafe
[function]
[call site]
00528
RansDecGet
[function]
[call site]
00529
RansDecRenormSafe
[function]
[call site]
00530
htscodecs_tls_free
[function]
[call site]
00531
rans_uncompress_O0
[function]
[call site]
00535
RansDecInit
[function]
[call site]
00536
RansDecInit
[function]
[call site]
00537
RansDecInit
[function]
[call site]
00538
RansDecInit
[function]
[call site]
00539
RansDecRenorm2
[function]
[call site]
00540
RansDecRenorm2
[function]
[call site]
00541
RansDecRenormSafe
[function]
[call site]
00542
RansDecRenormSafe
[function]
[call site]
00543
RansDecRenormSafe
[function]
[call site]
00544
RansDecRenormSafe
[function]
[call site]
00545
fqz_decompress
[function]
[call site]
00546
uncompress_block_fqz2f
[function]
[call site]
00547
var_get_u32
[function]
[call site]
00548
fqz_read_parameters
[function]
[call site]
00549
read_array
[function]
[call site]
00550
fqz_read_parameters1
[function]
[call site]
00551
read_array
[function]
[call site]
00552
read_array
[function]
[call site]
00553
read_array
[function]
[call site]
00554
fqz_free_parameters
[function]
[call site]
00555
fqz_create_models
[function]
[call site]
00556
htscodecs_tls_alloc
[function]
[call site]
00557
SIMPLE_MODEL256_init
[function]
[call site]
00558
SIMPLE_MODEL256_init
[function]
[call site]
00559
SIMPLE_MODEL2_init
[function]
[call site]
00560
SIMPLE_MODEL2_init
[function]
[call site]
00561
SIMPLE_MODEL256_init
[function]
[call site]
00562
RC_SetInput
[function]
[call site]
00563
RC_StartDecode
[function]
[call site]
00564
realloc
[call site]
00565
realloc
[call site]
00566
decompress_new_read
[function]
[call site]
00567
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00568
RC_GetFreq
[function]
[call site]
00569
RC_Decode
[function]
[call site]
00570
SIMPLE_MODEL256_normalize
[function]
[call site]
00571
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00572
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00573
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00574
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00575
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00576
SIMPLE_MODEL2_normalize
[function]
[call site]
00577
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00578
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00579
fqz_update_ctx
[function]
[call site]
00580
realloc
[call site]
00581
realloc
[call site]
00582
RC_FinishDecode
[function]
[call site]
00583
fqz_destroy_models
[function]
[call site]
00584
htscodecs_tls_free
[function]
[call site]
00585
fqz_free_parameters
[function]
[call site]
00586
fqz_destroy_models
[function]
[call site]
00587
fqz_free_parameters
[function]
[call site]
00588
rans_uncompress_4x16
[function]
[call site]
00589
rans_uncompress_to_4x16
[function]
[call site]
00590
var_get_u32
[function]
[call site]
00591
var_get_u32
[function]
[call site]
00592
rans_uncompress_to_4x16
[function]
[call site]
00593
unstripe
[function]
[call site]
00594
var_get_u32
[function]
[call site]
00595
hts_unpack_meta
[function]
[call site]
00596
var_get_u32
[function]
[call site]
00597
var_get_u32
[function]
[call site]
00598
var_get_u32
[function]
[call site]
00599
var_get_u32
[function]
[call site]
00600
rans_dec_func
[function]
[call site]
00601
pthread_once
[call site]
00602
htscodecs_tls_cpu_init
[function]
[call site]
00603
__get_cpuid_max
[function]
[call site]
00604
not_ancient_darwin
[function]
[call site]
00605
strerror
[call site]
00606
fprintf
[call site]
00607
fprintf
[call site]
00608
rans_dec_func
[function]
[call site]
00609
hts_rle_decode
[function]
[call site]
00610
var_get_u32
[function]
[call site]
00611
hts_unpack
[function]
[call site]
00612
arith_uncompress_to
[function]
[call site]
00613
var_get_u32
[function]
[call site]
00614
var_get_u32
[function]
[call site]
00615
arith_uncompress_to
[function]
[call site]
00616
unstripe
[function]
[call site]
00617
var_get_u32
[function]
[call site]
00618
hts_unpack_meta
[function]
[call site]
00619
var_get_u32
[function]
[call site]
00620
BZ2_bzBuffToBuffDecompress
[call site]
00621
arith_uncompress_O1_RLE
[function]
[call site]
00622
htscodecs_tls_alloc
[function]
[call site]
00623
SIMPLE_MODEL256_init
[function]
[call site]
00624
htscodecs_tls_alloc
[function]
[call site]
00625
htscodecs_tls_free
[function]
[call site]
00626
SIMPLE_MODEL258_init
[function]
[call site]
00627
RC_SetInput
[function]
[call site]
00628
RC_StartDecode
[function]
[call site]
00629
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00630
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00631
SIMPLE_MODEL258_normalize
[function]
[call site]
00632
RC_FinishDecode
[function]
[call site]
00633
htscodecs_tls_free
[function]
[call site]
00634
htscodecs_tls_free
[function]
[call site]
00635
htscodecs_tls_free
[function]
[call site]
00636
htscodecs_tls_free
[function]
[call site]
00637
arith_uncompress_O0_RLE
[function]
[call site]
00638
SIMPLE_MODEL256_init
[function]
[call site]
00639
htscodecs_tls_alloc
[function]
[call site]
00640
SIMPLE_MODEL258_init
[function]
[call site]
00641
RC_SetInput
[function]
[call site]
00642
RC_StartDecode
[function]
[call site]
00643
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00644
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00645
RC_FinishDecode
[function]
[call site]
00646
htscodecs_tls_free
[function]
[call site]
00647
htscodecs_tls_free
[function]
[call site]
00648
arith_uncompress_O1
[function]
[call site]
00649
htscodecs_tls_alloc
[function]
[call site]
00650
SIMPLE_MODEL256_init
[function]
[call site]
00651
RC_SetInput
[function]
[call site]
00652
RC_StartDecode
[function]
[call site]
00653
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00654
RC_FinishDecode
[function]
[call site]
00655
htscodecs_tls_free
[function]
[call site]
00656
htscodecs_tls_free
[function]
[call site]
00657
arith_uncompress_O0
[function]
[call site]
00658
SIMPLE_MODEL256_init
[function]
[call site]
00659
RC_SetInput
[function]
[call site]
00660
RC_StartDecode
[function]
[call site]
00661
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00662
RC_FinishDecode
[function]
[call site]
00663
hts_unpack
[function]
[call site]
00664
tok3_decode_names
[function]
[call site]
00665
create_context
[function]
[call site]
00666
fprintf
[call site]
00667
htscodecs_tls_alloc
[function]
[call site]
00668
uncompressed_size
[function]
[call site]
00669
var_get_u32
[function]
[call site]
00670
var_get_u32
[function]
[call site]
00671
uncompress
[function]
[call site]
00672
var_get_u32
[function]
[call site]
00673
arith_decode
[function]
[call site]
00674
var_get_u32
[function]
[call site]
00675
arith_uncompress_to
[function]
[call site]
00676
rans_decode
[function]
[call site]
00677
var_get_u32
[function]
[call site]
00678
rans_uncompress_to_4x16
[function]
[call site]
00679
decode_name
[function]
[call site]
00680
decode_token_type
[function]
[call site]
00681
decode_token_int
[function]
[call site]
00682
strlen
[call site]
00683
strcpy
[call site]
00684
strlen
[call site]
00685
decode_token_type
[function]
[call site]
00686
decode_token_char
[function]
[call site]
00687
decode_token_alpha
[function]
[call site]
00688
decode_token_int1
[function]
[call site]
00689
decode_token_int
[function]
[call site]
00690
append_uint32_fixed
[function]
[call site]
00691
decode_token_int1
[function]
[call site]
00692
append_uint32_fixed
[function]
[call site]
00693
decode_token_int
[function]
[call site]
00694
append_uint32_var
[function]
[call site]
00695
decode_token_int1
[function]
[call site]
00696
append_uint32_var
[function]
[call site]
00697
append_uint32_var
[function]
[call site]
00698
append_uint32_fixed
[function]
[call site]
00699
realloc
[call site]
00700
free_context
[function]
[call site]
00701
pool_destroy
[function]
[call site]
00702
htscodecs_tls_free
[function]
[call site]
00703
free_context
[function]
[call site]
00704
cram_free_container
[function]
[call site]
00705
cram_free_block
[function]
[call site]
00706
int32_get_blk
[function]
[call site]
00707
cram_free_container
[function]
[call site]
00708
cram_free_block
[function]
[call site]
00709
cram_free_container
[function]
[call site]
00710
cram_free_block
[function]
[call site]
00711
cram_free_block
[function]
[call site]
00712
cram_read_block
[function]
[call site]
00713
cram_free_container
[function]
[call site]
00714
cram_free_block
[function]
[call site]
00715
cram_free_container
[function]
[call site]
00716
hread
[function]
[call site]
00717
cram_free_container
[function]
[call site]
00718
cram_free_container
[function]
[call site]
00719
sam_hdr_init
[function]
[call site]
00720
calloc
[call site]
00721
sam_hdr_add_lines
[function]
[call site]
00722
sam_hdr_fill_hrecs
[function]
[call site]
00723
sam_hrecs_new
[function]
[call site]
00724
calloc
[call site]
00725
kh_init_sam_hrecs_t
[function]
[call site]
00726
calloc
[call site]
00727
kh_init_m_s2i
[function]
[call site]
00728
calloc
[call site]
00729
kh_init_m_s2i
[function]
[call site]
00730
kh_init_m_s2i
[function]
[call site]
00731
pool_create
[function]
[call site]
00732
next_power_2
[function]
[call site]
00733
pool_create
[function]
[call site]
00734
string_pool_create
[function]
[call site]
00735
sam_hrecs_init_type_order
[function]
[call site]
00736
calloc
[call site]
00737
kh_destroy_sam_hrecs_t
[function]
[call site]
00738
pool_destroy
[function]
[call site]
00739
pool_destroy
[function]
[call site]
00740
string_pool_destroy
[function]
[call site]
00741
sam_hrecs_refs_from_targets_array
[function]
[call site]
00742
hts_log
[function]
[call site]
00743
hts_realloc_p
[function]
[call site]
00744
hts_prod_sat2
[function]
[call site]
00745
hts_realloc
[function]
[call site]
00746
__errno_location
[call site]
00747
realloc
[call site]
00748
kh_grow_to_fit_m_s2i
[function]
[call site]
00749
kh_resize_m_s2i
[function]
[call site]
00750
__ac_FNV1a_hash_string
[function]
[call site]
00751
string_dup
[function]
[call site]
00752
strlen
[call site]
00753
string_ndup
[function]
[call site]
00754
string_alloc
[function]
[call site]
00755
new_string_pool
[function]
[call site]
00756
hts_realloc_p
[function]
[call site]
00757
hts_prod_sat2
[function]
[call site]
00758
hts_realloc
[function]
[call site]
00759
hts_malloc
[function]
[call site]
00760
kh_get_s2i
[function]
[call site]
00761
__ac_FNV1a_hash_string
[function]
[call site]
00762
strcmp
[call site]
00763
kh_put_m_s2i
[function]
[call site]
00764
strcmp
[call site]
00765
hts_log
[function]
[call site]
00766
__errno_location
[call site]
00767
strerror
[call site]
00768
hts_log
[function]
[call site]
00769
kh_get_m_s2i
[function]
[call site]
00770
kh_del_m_s2i
[function]
[call site]
00771
sam_hrecs_free
[function]
[call site]
00772
kh_destroy_sam_hrecs_t
[function]
[call site]
00773
kh_destroy_m_s2i
[function]
[call site]
00774
kh_destroy_m_s2i
[function]
[call site]
00775
kh_destroy_m_s2i
[function]
[call site]
00776
pool_destroy
[function]
[call site]
00777
pool_destroy
[function]
[call site]
00778
string_pool_destroy
[function]
[call site]
00779
sam_hrecs_parse_lines
[function]
[call site]
00780
strlen
[call site]
00781
sam_hrecs_error
[function]
[call site]
00782
hts_log
[function]
[call site]
00783
sam_hrecs_parse_single_line
[function]
[call site]
00784
sam_hrecs_error
[function]
[call site]
00785
isalpha_c
[function]
[call site]
00786
__ctype_b_loc
[call site]
00787
sam_hrecs_error
[function]
[call site]
00788
TYPEKEY
[function]
[call site]
00789
pool_alloc
[function]
[call site]
00790
new_pool
[function]
[call site]
00791
hts_realloc_ps
[function]
[call site]
00792
hts_add_sat2
[function]
[call site]
00793
hts_prod_sat2
[function]
[call site]
00794
hts_realloc
[function]
[call site]
00795
hts_malloc_p
[function]
[call site]
00796
kh_put_sam_hrecs_t
[function]
[call site]
00797
kh_resize_sam_hrecs_t
[function]
[call site]
00798
realloc
[call site]
00799
TYPEKEY
[function]
[call site]
00800
parse_comment_line
[function]
[call site]
00801
sam_hrecs_error
[function]
[call site]
00802
warn_if_known_stderr
[function]
[call site]
00803
kmemmem
[function]
[call site]
00804
boyer_moore
[function]
[call site]
00805
memchr
[call site]
00806
ksBM_prep
[function]
[call site]
00807
hts_calloc_ps
[function]
[call site]
00808
hts_add_sat2
[function]
[call site]
00809
hts_calloc
[function]
[call site]
00810
__errno_location
[call site]
00811
calloc
[call site]
00812
calloc
[call site]
00813
karp_rabin
[function]
[call site]
00814
fast_exp
[function]
[call site]
00815
memcmp
[call site]
00816
known_stderr
[function]
[call site]
00817
hts_log
[function]
[call site]
00818
hts_log
[function]
[call site]
00819
kmemmem
[function]
[call site]
00820
known_stderr
[function]
[call site]
00821
kmemmem
[function]
[call site]
00822
known_stderr
[function]
[call site]
00823
pool_alloc
[function]
[call site]
00824
string_ndup
[function]
[call site]
00825
parse_noncomment_line
[function]
[call site]
00826
TYPEKEY
[function]
[call site]
00827
sam_hrecs_error
[function]
[call site]
00828
warn_if_known_stderr
[function]
[call site]
00829
sam_hrecs_error
[function]
[call site]
00830
warn_if_known_stderr
[function]
[call site]
00831
pool_alloc
[function]
[call site]
00832
string_ndup
[function]
[call site]
00833
sam_hrecs_global_list_add
[function]
[call site]
00834
TYPEKEY
[function]
[call site]
00835
__assert_fail
[call site]
00836
sam_hrecs_free_tags
[function]
[call site]
00837
sam_hrecs_free_tags
[function]
[call site]
00838
pool_free
[function]
[call site]
00839
pool_free
[function]
[call site]
00840
TYPEKEY
[function]
[call site]
00841
kh_grow_to_fit_m_s2i
[function]
[call site]
00842
hts_realloc_p
[function]
[call site]
00843
sam_hrecs_update_hashes
[function]
[call site]
00844
TYPEKEY
[function]
[call site]
00845
__assert_fail
[call site]
00846
__assert_fail
[call site]
00847
strtoll
[call site]
00848
__assert_fail
[call site]
00849
hts_log
[function]
[call site]
00850
hts_log
[function]
[call site]
00851
hts_log
[function]
[call site]
00852
kh_get_m_s2i
[function]
[call site]
00853
snprintf
[call site]
00854
sam_hrecs_update
[function]
[call site]
00855
sam_hrecs_vupdate
[function]
[call site]
00856
sam_hrecs_find_key
[function]
[call site]
00857
pool_alloc
[function]
[call site]
00858
strlen
[call site]
00859
hts_add_sat2
[function]
[call site]
00860
string_alloc
[function]
[call site]
00861
snprintf
[call site]
00862
sam_hrecs_add_ref_altnames
[function]
[call site]
00863
kstrtok
[function]
[call site]
00864
strchr
[call site]
00865
strlen
[call site]
00866
string_ndup
[function]
[call site]
00867
kh_put_m_s2i
[function]
[call site]
00868
hts_log
[function]
[call site]
00869
strcmp
[call site]
00870
sam_hrecs_add_ref_altnames
[function]
[call site]
00871
strcmp
[call site]
00872
hts_log
[function]
[call site]
00873
hts_log
[function]
[call site]
00874
hts_realloc_p
[function]
[call site]
00875
kh_put_m_s2i
[function]
[call site]
00876
sam_hrecs_add_ref_altnames
[function]
[call site]
00877
TYPEKEY
[function]
[call site]
00878
sam_hrecs_find_key
[function]
[call site]
00879
hts_log
[function]
[call site]
00880
__assert_fail
[call site]
00881
kh_get_m_s2i
[function]
[call site]
00882
__assert_fail
[call site]
00883
hts_log
[function]
[call site]
00884
hts_realloc_p
[function]
[call site]
00885
kh_put_m_s2i
[function]
[call site]
00886
TYPEKEY
[function]
[call site]
00887
hts_realloc_p
[function]
[call site]
00888
__assert_fail
[call site]
00889
hts_log
[function]
[call site]
00890
kh_get_m_s2i
[function]
[call site]
00891
kh_put_m_s2i
[function]
[call site]
00892
hts_realloc_p
[function]
[call site]
00893
sam_hrecs_free
[function]
[call site]
00894
add_stub_ref_sq_lines
[function]
[call site]
00895
snprintf
[call site]
00896
sam_hrecs_add
[function]
[call site]
00897
sam_hrecs_vadd
[function]
[call site]
00898
TYPEKEY
[function]
[call site]
00899
strncmp
[call site]
00900
sam_hrecs_find_type_id
[function]
[call site]
00901
kh_get_m_s2i
[function]
[call site]
00902
kh_get_m_s2i
[function]
[call site]
00903
kh_get_m_s2i
[function]
[call site]
00904
TYPEKEY
[function]
[call site]
00905
kh_get_sam_hrecs_t
[function]
[call site]
00906
sam_hrecs_vupdate
[function]
[call site]
00907
pool_alloc
[function]
[call site]
00908
kh_put_sam_hrecs_t
[function]
[call site]
00909
__assert_fail
[call site]
00910
sam_hrecs_global_list_add
[function]
[call site]
00911
__assert_fail
[call site]
00912
__assert_fail
[call site]
00913
__assert_fail
[call site]
00914
__assert_fail
[call site]
00915
strncmp
[call site]
00916
pool_alloc
[function]
[call site]
00917
strncmp
[call site]
00918
strlen
[call site]
00919
hts_add_sat2
[function]
[call site]
00920
string_alloc
[function]
[call site]
00921
snprintf
[call site]
00922
strlen
[call site]
00923
string_ndup
[function]
[call site]
00924
strncmp
[call site]
00925
pool_alloc
[function]
[call site]
00926
strncmp
[call site]
00927
strlen
[call site]
00928
hts_add_sat2
[function]
[call site]
00929
string_alloc
[function]
[call site]
00930
snprintf
[call site]
00931
strlen
[call site]
00932
string_ndup
[function]
[call site]
00933
TYPEKEY
[function]
[call site]
00934
sam_hrecs_update_hashes
[function]
[call site]
00935
strncmp
[call site]
00936
hts_log
[function]
[call site]
00937
sam_hrecs_free
[function]
[call site]
00938
rebuild_target_arrays
[function]
[call site]
00939
sam_hdr_update_target_arrays
[function]
[call site]
00940
hts_realloc_p
[function]
[call site]
00941
hts_realloc_p
[function]
[call site]
00942
strcmp
[call site]
00943
strdup
[call site]
00944
kh_get_s2i
[function]
[call site]
00945
kh_del_s2i
[function]
[call site]
00946
kh_init_s2i
[function]
[call site]
00947
calloc
[call site]
00948
kh_put_s2i
[function]
[call site]
00949
kh_resize_s2i
[function]
[call site]
00950
realloc
[call site]
00951
kh_get_s2i
[function]
[call site]
00952
kh_del_s2i
[function]
[call site]
00953
sam_hrecs_parse_lines
[function]
[call site]
00954
rebuild_target_arrays
[function]
[call site]
00955
redact_header_text
[function]
[call site]
00956
__assert_fail
[call site]
00957
sam_hdr_destroy
[function]
[call site]
00958
sam_hrecs_free
[function]
[call site]
00959
kh_destroy_s2i
[function]
[call site]
00960
cram_free_file_def
[function]
[call site]
00961
calloc
[call site]
00962
strncpy
[call site]
00963
cram_init_tables
[function]
[call site]
00964
strrchr
[call site]
00965
strdup
[call site]
00966
refs_create
[function]
[call site]
00967
calloc
[call site]
00968
string_pool_create
[function]
[call site]
00969
kh_init_refs
[function]
[call site]
00970
calloc
[call site]
00971
pthread_mutex_init
[call site]
00972
refs_free
[function]
[call site]
00973
string_pool_destroy
[function]
[call site]
00974
ref_entry_free_seq
[function]
[call site]
00975
mfclose
[function]
[call site]
00976
mfflush
[function]
[call site]
00977
fwrite
[call site]
00978
fflush
[call site]
00979
fseek
[call site]
00980
fwrite
[call site]
00981
fflush
[call site]
00982
ftell
[call site]
00983
fileno
[call site]
00984
ftell
[call site]
00985
ftruncate
[call site]
00986
munmap
[call site]
00987
fclose
[call site]
00988
mfdestroy
[function]
[call site]
00989
kh_destroy_refs
[function]
[call site]
00990
bgzf_close
[function]
[call site]
00991
bgzf_flush
[function]
[call site]
00992
mt_queue
[function]
[call site]
00993
pthread_mutex_lock
[call site]
00994
pool_alloc
[function]
[call site]
00995
pthread_mutex_unlock
[call site]
00996
hts_tpool_dispatch3
[function]
[call site]
00997
pthread_mutex_lock
[call site]
00998
pthread_mutex_unlock
[call site]
00999
__errno_location
[call site]
01000
pthread_mutex_unlock
[call site]
01001
pthread_cond_wait
[call site]
01002
pthread_mutex_unlock
[call site]
01003
wake_next_worker
[function]
[call site]
01004
pthread_mutex_lock
[call site]
01005
__assert_fail
[call site]
01006
__assert_fail
[call site]
01007
pthread_cond_signal
[call site]
01008
pthread_mutex_unlock
[call site]
01009
pthread_mutex_unlock
[call site]
01010
bgzf_encode_level0_func
[function]
[call site]
01011
u16_to_le
[function]
[call site]
01012
u16_to_le
[function]
[call site]
01013
u16_to_le
[function]
[call site]
01014
hts_crc32
[function]
[call site]
01015
crc32
[call site]
01016
u32_to_le
[function]
[call site]
01017
u32_to_le
[function]
[call site]
01018
job_cleanup
[function]
[call site]
01019
pthread_mutex_lock
[call site]
01020
pool_free
[function]
[call site]
01021
pthread_mutex_unlock
[call site]
01022
hts_tpool_dispatch3
[function]
[call site]
01023
bgzf_encode_func
[function]
[call site]
01024
bgzf_compress
[function]
[call site]
01025
u16_to_le
[function]
[call site]
01026
u16_to_le
[function]
[call site]
01027
deflateInit2_
[call site]
01028
bgzf_zerr
[function]
[call site]
01029
hts_log
[function]
[call site]
01030
deflate
[call site]
01031
deflateEnd
[call site]
01032
bgzf_zerr
[function]
[call site]
01033
hts_log
[function]
[call site]
01034
deflateEnd
[call site]
01035
deflateEnd
[call site]
01036
bgzf_zerr
[function]
[call site]
01037
hts_log
[function]
[call site]
01038
packInt16
[function]
[call site]
01039
crc32
[call site]
01040
packInt32
[function]
[call site]
01041
packInt32
[function]
[call site]
01042
job_cleanup
[function]
[call site]
01043
job_cleanup
[function]
[call site]
01044
pthread_mutex_lock
[call site]
01045
pthread_mutex_unlock
[call site]
01046
mt_flush_queue
[function]
[call site]
01047
pthread_mutex_lock
[call site]
01048
hts_tpool_process_is_shutdown
[function]
[call site]
01049
pthread_mutex_lock
[call site]
01050
pthread_mutex_unlock
[call site]
01051
pthread_mutex_unlock
[call site]
01052
hts_usleep
[function]
[call site]
01053
nanosleep
[call site]
01054
pthread_mutex_lock
[call site]
01055
pthread_mutex_unlock
[call site]
01056
hts_tpool_process_flush
[function]
[call site]
01057
pthread_mutex_lock
[call site]
01058
pthread_cond_signal
[call site]
01059
pthread_cond_wait
[call site]
01060
gettimeofday
[call site]
01061
pthread_cond_timedwait
[call site]
01062
gettimeofday
[call site]
01063
pthread_cond_timedwait
[call site]
01064
pthread_mutex_unlock
[call site]
01065
pthread_mutex_lock
[call site]
01066
pthread_mutex_unlock
[call site]
01067
hflush
[function]
[call site]
01068
flush_buffer
[function]
[call site]
01069
__errno_location
[call site]
01070
bgzf_index_add_block
[function]
[call site]
01071
hts_realloc_p
[function]
[call site]
01072
deflate_block
[function]
[call site]
01073
bgzf_compress
[function]
[call site]
01074
bgzf_gzip_compress
[function]
[call site]
01075
deflate
[call site]
01076
bgzf_zerr
[function]
[call site]
01077
hts_log
[function]
[call site]
01078
hts_log
[function]
[call site]
01079
hts_log
[function]
[call site]
01080
bgzf_zerr
[function]
[call site]
01081
hts_log
[function]
[call site]
01082
hwrite
[function]
[call site]
01083
hfile_set_blksize
[function]
[call site]
01084
realloc
[call site]
01085
hwrite2
[function]
[call site]
01086
flush_buffer
[function]
[call site]
01087
__errno_location
[call site]
01088
hwrite2
[function]
[call site]
01089
hts_log
[function]
[call site]
01090
bgzf_close_mt
[function]
[call site]
01091
mt_destroy
[function]
[call site]
01092
pthread_mutex_lock
[call site]
01093
pthread_cond_signal
[call site]
01094
hts_tpool_wake_dispatch
[function]
[call site]
01095
pthread_mutex_lock
[call site]
01096
pthread_cond_signal
[call site]
01097
pthread_mutex_unlock
[call site]
01098
pthread_mutex_unlock
[call site]
01099
hts_tpool_process_is_shutdown
[function]
[call site]
01100
hts_tpool_process_destroy
[function]
[call site]
01101
pthread_mutex_lock
[call site]
01102
pthread_mutex_unlock
[call site]
01103
hts_tpool_process_reset
[function]
[call site]
01104
pthread_mutex_lock
[call site]
01105
pthread_mutex_unlock
[call site]
01106
hts_tpool_delete_result
[function]
[call site]
01107
hts_tpool_process_flush
[function]
[call site]
01108
pthread_mutex_lock
[call site]
01109
pthread_cond_signal
[call site]
01110
pthread_mutex_unlock
[call site]
01111
hts_tpool_delete_result
[function]
[call site]
01112
pthread_mutex_lock
[call site]
01113
hts_tpool_process_detach_locked
[function]
[call site]
01114
hts_tpool_process_shutdown_locked
[function]
[call site]
01115
pthread_cond_broadcast
[call site]
01116
pthread_cond_broadcast
[call site]
01117
pthread_cond_broadcast
[call site]
01118
pthread_cond_broadcast
[call site]
01119
pthread_mutex_unlock
[call site]
01120
pthread_cond_destroy
[call site]
01121
pthread_cond_destroy
[call site]
01122
pthread_cond_destroy
[call site]
01123
pthread_cond_destroy
[call site]
01124
pthread_mutex_unlock
[call site]
01125
pthread_join
[call site]
01126
pthread_mutex_destroy
[call site]
01127
pthread_mutex_destroy
[call site]
01128
pthread_mutex_destroy
[call site]
01129
pthread_cond_destroy
[call site]
01130
pool_free
[function]
[call site]
01131
hts_tpool_destroy
[function]
[call site]
01132
pthread_mutex_lock
[call site]
01133
pthread_cond_signal
[call site]
01134
pthread_mutex_unlock
[call site]
01135
pthread_join
[call site]
01136
pthread_mutex_destroy
[call site]
01137
pthread_cond_destroy
[call site]
01138
pool_destroy
[function]
[call site]
01139
fflush
[call site]
01140
deflate_block
[function]
[call site]
01141
bgzf_zerr
[function]
[call site]
01142
hts_log
[function]
[call site]
01143
bgzf_close_mt
[function]
[call site]
01144
hwrite
[function]
[call site]
01145
hflush
[function]
[call site]
01146
hts_log
[function]
[call site]
01147
bgzf_close_mt
[function]
[call site]
01148
inflateEnd
[call site]
01149
deflateEnd
[call site]
01150
bgzf_zerr
[function]
[call site]
01151
hts_log
[function]
[call site]
01152
hclose
[function]
[call site]
01153
writebuffer_is_nonempty
[function]
[call site]
01154
hflush
[function]
[call site]
01155
__errno_location
[call site]
01156
hfile_destroy
[function]
[call site]
01157
__errno_location
[call site]
01158
bgzf_index_destroy
[function]
[call site]
01159
free_cache
[function]
[call site]
01160
kh_destroy_bgzf_cache
[function]
[call site]
01161
bgzf_clear_private_data
[function]
[call site]
01162
__assert_fail
[call site]
01163
pthread_mutex_destroy
[call site]
01164
pthread_mutex_init
[call site]
01165
pthread_mutex_init
[call site]
01166
pthread_mutex_init
[call site]
01167
pthread_mutex_init
[call site]
01168
cram_new_metrics
[function]
[call site]
01169
calloc
[call site]
01170
kh_init_m_metrics
[function]
[call site]
01171
calloc
[call site]
01172
refs_from_header
[function]
[call site]
01173
sam_hdr_fill_hrecs
[function]
[call site]
01174
hts_realloc_ps
[function]
[call site]
01175
kh_get_refs
[function]
[call site]
01176
__ac_FNV1a_hash_string
[function]
[call site]
01177
strcmp
[call site]
01178
calloc
[call site]
01179
string_dup
[function]
[call site]
01180
sam_hrecs_find_type_id
[function]
[call site]
01181
sam_hrecs_find_key
[function]
[call site]
01182
string_dup
[function]
[call site]
01183
sam_hrecs_find_key
[function]
[call site]
01184
strtoll
[call site]
01185
kh_put_refs
[function]
[call site]
01186
kh_resize_refs
[function]
[call site]
01187
realloc
[call site]
01188
cram_set_option
[function]
[call site]
01189
cram_set_voption
[function]
[call site]
01190
__errno_location
[call site]
01191
strdup
[call site]
01192
refs_free
[function]
[call site]
01193
cram_seek_to_refpos
[function]
[call site]
01194
cram_index_query
[function]
[call site]
01195
cram_seek
[function]
[call site]
01196
cram_drain_rqueue
[function]
[call site]
01197
hts_tpool_process_empty
[function]
[call site]
01198
pthread_mutex_lock
[call site]
01199
pthread_mutex_unlock
[call site]
01200
hts_tpool_next_result_wait
[function]
[call site]
01201
pthread_mutex_lock
[call site]
01202
hts_tpool_next_result_locked
[function]
[call site]
01203
pthread_cond_signal
[call site]
01204
wake_next_worker
[function]
[call site]
01205
gettimeofday
[call site]
01206
pthread_mutex_unlock
[call site]
01207
hts_tpool_process_destroy
[function]
[call site]
01208
pthread_cond_timedwait
[call site]
01209
pthread_mutex_unlock
[call site]
01210
hts_tpool_result_data
[function]
[call site]
01211
cram_free_container
[function]
[call site]
01212
cram_free_slice
[function]
[call site]
01213
hts_tpool_delete_result
[function]
[call site]
01214
cram_free_container
[function]
[call site]
01215
cram_free_slice
[function]
[call site]
01216
cram_free_container
[function]
[call site]
01217
hseek
[function]
[call site]
01218
pthread_mutex_lock
[call site]
01219
pthread_mutex_unlock
[call site]
01220
cram_free_container
[function]
[call site]
01221
cram_free_container
[function]
[call site]
01222
pthread_mutex_lock
[call site]
01223
pthread_mutex_unlock
[call site]
01224
pthread_mutex_lock
[call site]
01225
pthread_mutex_unlock
[call site]
01226
pthread_mutex_lock
[call site]
01227
pthread_mutex_unlock
[call site]
01228
cram_load_reference
[function]
[call site]
01229
refs_load_fai
[function]
[call site]
01230
strlen
[call site]
01231
refs_create
[function]
[call site]
01232
bgzf_close
[function]
[call site]
01233
strstr
[call site]
01234
string_ndup
[function]
[call site]
01235
snprintf
[call site]
01236
strcmp
[call site]
01237
string_ndup
[function]
[call site]
01238
snprintf
[call site]
01239
string_dup
[function]
[call site]
01240
snprintf
[call site]
01241
bgzf_open_ref
[function]
[call site]
01242
strncmp
[call site]
01243
hisremote
[function]
[call site]
01244
find_scheme_handler
[function]
[call site]
01245
snprintf
[call site]
01246
access
[call site]
01247
fai_build
[function]
[call site]
01248
fai_build3
[function]
[call site]
01249
fai_build3_core
[function]
[call site]
01250
bgzf_open
[function]
[call site]
01251
strchr
[call site]
01252
hopen
[function]
[call site]
01253
bgzf_read_init
[function]
[call site]
01254
hclose_abruptly
[function]
[call site]
01255
strchr
[call site]
01256
hopen
[function]
[call site]
01257
bgzf_write_init
[function]
[call site]
01258
__errno_location
[call site]
01259
ed_is_big
[function]
[call site]
01260
strerror
[call site]
01261
hts_log
[function]
[call site]
01262
bgzf_index_build_init
[function]
[call site]
01263
bgzf_index_destroy
[function]
[call site]
01264
calloc
[call site]
01265
hts_log
[function]
[call site]
01266
fai_build_core
[function]
[call site]
01267
calloc
[call site]
01268
kh_init_s
[function]
[call site]
01269
bgzf_getc_
[function]
[call site]
01270
bgzf_getc
[function]
[call site]
01271
bgzf_read_block
[function]
[call site]
01272
hts_tpool_next_result_wait
[function]
[call site]
01273
hts_tpool_result_data
[function]
[call site]
01274
hts_malloc_p
[function]
[call site]
01275
mt_destroy
[function]
[call site]
01276
hts_tpool_delete_result
[function]
[call site]
01277
hts_log
[function]
[call site]
01278
hts_tpool_delete_result
[function]
[call site]
01279
hts_log
[function]
[call site]
01280
hts_tpool_delete_result
[function]
[call site]
01281
bgzf_index_add_block
[function]
[call site]
01282
pthread_mutex_lock
[call site]
01283
pool_free
[function]
[call site]
01284
pthread_mutex_unlock
[call site]
01285
hts_tpool_delete_result
[function]
[call site]
01286
bgzf_htell
[function]
[call site]
01287
pthread_mutex_lock
[call site]
01288
pthread_mutex_unlock
[call site]
01289
htell
[function]
[call site]
01290
hread
[function]
[call site]
01291
__errno_location
[call site]
01292
strerror
[call site]
01293
hts_log
[function]
[call site]
01294
inflate_gzip_block
[function]
[call site]
01295
hread
[function]
[call site]
01296
inflate
[call site]
01297
bgzf_zerr
[function]
[call site]
01298
hts_log
[function]
[call site]
01299
hpeek
[function]
[call site]
01300
inflateReset
[call site]
01301
bgzf_zerr
[function]
[call site]
01302
hts_log
[function]
[call site]
01303
hts_log
[function]
[call site]
01304
hts_log
[function]
[call site]
01305
load_block_from_cache
[function]
[call site]
01306
kh_get_bgzf_cache
[function]
[call site]
01307
hseek
[function]
[call site]
01308
hts_log
[function]
[call site]
01309
exit
[call site]
01310
hread
[function]
[call site]
01311
hts_log
[function]
[call site]
01312
check_header
[function]
[call site]
01313
unpackInt16
[function]
[call site]
01314
unpackInt16
[function]
[call site]
01315
hts_log
[function]
[call site]
01316
hread
[function]
[call site]
01317
calloc
[call site]
01318
inflateInit2_
[call site]
01319
bgzf_zerr
[function]
[call site]
01320
hts_log
[function]
[call site]
01321
inflate_gzip_block
[function]
[call site]
01322
hts_log
[function]
[call site]
01323
unpackInt16
[function]
[call site]
01324
hts_log
[function]
[call site]
01325
hread
[function]
[call site]
01326
hts_log
[function]
[call site]
01327
inflate_block
[function]
[call site]
01328
le_to_u32
[function]
[call site]
01329
bgzf_uncompress
[function]
[call site]
01330
inflateInit2_
[call site]
01331
bgzf_zerr
[function]
[call site]
01332
hts_log
[function]
[call site]
01333
inflate
[call site]
01334
bgzf_zerr
[function]
[call site]
01335
inflateEnd
[call site]
01336
bgzf_zerr
[function]
[call site]
01337
hts_log
[function]
[call site]
01338
inflateEnd
[call site]
01339
bgzf_zerr
[function]
[call site]
01340
hts_log
[function]
[call site]
01341
crc32
[call site]
01342
hts_log
[function]
[call site]
01343
bgzf_zerr
[function]
[call site]
01344
hts_log
[function]
[call site]
01345
bgzf_htell
[function]
[call site]
01346
bgzf_index_add_block
[function]
[call site]
01347
cache_block
[function]
[call site]
01348
kh_del_bgzf_cache
[function]
[call site]
01349
kh_put_bgzf_cache
[function]
[call site]
01350
kh_resize_bgzf_cache
[function]
[call site]
01351
realloc
[call site]
01352
bgzf_htell
[function]
[call site]
01353
hts_log
[function]
[call site]
01354
hts_log
[function]
[call site]
01355
bgzf_getc_
[function]
[call site]
01356
hts_log
[function]
[call site]
01357
__ctype_b_loc
[call site]
01358
hts_log
[function]
[call site]
01359
fai_insert_index
[function]
[call site]
01360
hts_log
[function]
[call site]
01361
hts_log
[function]
[call site]
01362
hts_log
[function]
[call site]
01363
hts_log
[function]
[call site]
01364
strdup
[call site]
01365
kh_put_s
[function]
[call site]
01366
kh_resize_s
[function]
[call site]
01367
__ac_FNV1a_hash_string
[function]
[call site]
01368
hts_log
[function]
[call site]
01369
hts_realloc_p
[function]
[call site]
01370
hts_log
[function]
[call site]
01371
__ctype_b_loc
[call site]
01372
kputc
[function]
[call site]
01373
bgzf_getc_
[function]
[call site]
01374
kputsn
[function]
[call site]
01375
hts_log
[function]
[call site]
01376
bgzf_getc_
[function]
[call site]
01377
bgzf_utell
[function]
[call site]
01378
bgzf_getc_
[function]
[call site]
01379
bgzf_utell
[function]
[call site]
01380
hts_log
[function]
[call site]
01381
isgraph_
[function]
[call site]
01382
bgzf_getc_
[function]
[call site]
01383
hts_log
[function]
[call site]
01384
bgzf_getc_
[function]
[call site]
01385
bgzf_utell
[function]
[call site]
01386
hts_log
[function]
[call site]
01387
hts_log
[function]
[call site]
01388
isgraph_
[function]
[call site]
01389
bgzf_getc_
[function]
[call site]
01390
hts_log
[function]
[call site]
01391
hts_log
[function]
[call site]
01392
fai_insert_index
[function]
[call site]
01393
hts_log
[function]
[call site]
01394
fai_destroy
[function]
[call site]
01395
kh_destroy_s
[function]
[call site]
01396
bgzf_close
[function]
[call site]
01397
hts_log
[function]
[call site]
01398
ksprintf
[function]
[call site]
01399
ksprintf
[function]
[call site]
01400
bgzf_index_dump
[function]
[call site]
01401
hts_log
[function]
[call site]
01402
__errno_location
[call site]
01403
get_name_suffix
[function]
[call site]
01404
strlen
[call site]
01405
snprintf
[call site]
01406
hopen
[function]
[call site]
01407
bgzf_index_dump_hfile
[function]
[call site]
01408
hts_log
[function]
[call site]
01409
__errno_location
[call site]
01410
bgzf_flush
[function]
[call site]
01411
hwrite_uint64
[function]
[call site]
01412
ed_is_big
[function]
[call site]
01413
ed_swap_8
[function]
[call site]
01414
hwrite
[function]
[call site]
01415
hwrite_uint64
[function]
[call site]
01416
hwrite_uint64
[function]
[call site]
01417
__errno_location
[call site]
01418
strerror
[call site]
01419
hts_log
[function]
[call site]
01420
hclose
[function]
[call site]
01421
__errno_location
[call site]
01422
strerror
[call site]
01423
hts_log
[function]
[call site]
01424
hclose_abruptly
[function]
[call site]
01425
hts_log
[function]
[call site]
01426
bgzf_close
[function]
[call site]
01427
__errno_location
[call site]
01428
strerror
[call site]
01429
hts_log
[function]
[call site]
01430
hopen
[function]
[call site]
01431
__errno_location
[call site]
01432
strerror
[call site]
01433
hts_log
[function]
[call site]
01434
fai_save
[function]
[call site]
01435
kh_get_s
[function]
[call site]
01436
__assert_fail
[call site]
01437
snprintf
[call site]
01438
snprintf
[call site]
01439
hputs
[function]
[call site]
01440
strlen
[call site]
01441
hputs2
[function]
[call site]
01442
hwrite2
[function]
[call site]
01443
hputs
[function]
[call site]
01444
__errno_location
[call site]
01445
strerror
[call site]
01446
hts_log
[function]
[call site]
01447
hclose
[function]
[call site]
01448
__errno_location
[call site]
01449
strerror
[call site]
01450
hts_log
[function]
[call site]
01451
fai_destroy
[function]
[call site]
01452
__errno_location
[call site]
01453
bgzf_close
[function]
[call site]
01454
fai_destroy
[function]
[call site]
01455
__errno_location
[call site]
01456
bgzf_open
[function]
[call site]
01457
perror
[call site]
01458
bgzf_index_load
[function]
[call site]
01459
get_name_suffix
[function]
[call site]
01460
hopen
[function]
[call site]
01461
bgzf_index_load_hfile
[function]
[call site]
01462
calloc
[call site]
01463
hread_uint64
[function]
[call site]
01464
hread
[function]
[call site]
01465
ed_is_big
[function]
[call site]
01466
ed_swap_8p
[function]
[call site]
01467
hread_uint64
[function]
[call site]
01468
hread_uint64
[function]
[call site]
01469
__errno_location
[call site]
01470
strerror
[call site]
01471
hts_log
[function]
[call site]
01472
hclose
[function]
[call site]
01473
__errno_location
[call site]
01474
strerror
[call site]
01475
hts_log
[function]
[call site]
01476
hclose_abruptly
[function]
[call site]
01477
hts_log
[function]
[call site]
01478
bgzf_close
[function]
[call site]
01479
hts_log
[function]
[call site]
01480
hopen
[function]
[call site]
01481
hts_log
[function]
[call site]
01482
perror
[call site]
01483
hgets
[function]
[call site]
01484
__errno_location
[call site]
01485
hgetln
[function]
[call site]
01486
hgetdelim
[function]
[call site]
01487
__errno_location
[call site]
01488
writebuffer_is_nonempty
[function]
[call site]
01489
__errno_location
[call site]
01490
memchr
[call site]
01491
refill_buffer
[function]
[call site]
01492
isspace_c
[function]
[call site]
01493
string_dup
[function]
[call site]
01494
isspace_c
[function]
[call site]
01495
strtoll
[call site]
01496
isspace_c
[function]
[call site]
01497
strtoll
[call site]
01498
isspace_c
[function]
[call site]
01499
strtol
[call site]
01500
isspace_c
[function]
[call site]
01501
strtol
[call site]
01502
kh_put_refs
[function]
[call site]
01503
hts_realloc_p
[function]
[call site]
01504
hclose
[function]
[call site]
01505
hclose_abruptly
[function]
[call site]
01506
refs_free
[function]
[call site]
01507
sanitise_SQ_lines
[function]
[call site]
01508
kh_get_refs
[function]
[call site]
01509
strcmp
[call site]
01510
__assert_fail
[call site]
01511
hts_log
[function]
[call site]
01512
refs_free
[function]
[call site]
01513
refs_create
[function]
[call site]
01514
refs_from_header
[function]
[call site]
01515
refs2id
[function]
[call site]
01516
calloc
[call site]
01517
kh_get_refs
[function]
[call site]
01518
hts_log
[function]
[call site]
01519
__isoc99_sscanf
[call site]
01520
hts_log
[function]
[call site]
01521
hts_log
[function]
[call site]
01522
__errno_location
[call site]
01523
hts_log
[function]
[call site]
01524
cram_init_tables
[function]
[call site]
01525
hts_tpool_init
[function]
[call site]
01526
hts_malloc_p
[function]
[call site]
01527
hts_malloc_p
[function]
[call site]
01528
pthread_mutexattr_init
[call site]
01529
pthread_mutexattr_settype
[call site]
01530
pthread_mutex_init
[call site]
01531
pthread_mutexattr_destroy
[call site]
01532
pthread_mutex_lock
[call site]
01533
pthread_attr_init
[call site]
01534
pthread_attr_getstacksize
[call site]
01535
pthread_attr_setstacksize
[call site]
01536
pthread_cond_init
[call site]
01537
pthread_create
[call site]
01538
tpool_worker
[function]
[call site]
01539
pthread_mutex_lock
[call site]
01540
__assert_fail
[call site]
01541
pthread_cond_wait
[call site]
01542
__assert_fail
[call site]
01543
pthread_cond_broadcast
[call site]
01544
pthread_cond_signal
[call site]
01545
pthread_mutex_unlock
[call site]
01546
hts_tpool_add_result
[function]
[call site]
01547
pthread_mutex_lock
[call site]
01548
pthread_cond_signal
[call site]
01549
pthread_mutex_unlock
[call site]
01550
pthread_mutex_unlock
[call site]
01551
hts_tpool_process_shutdown
[function]
[call site]
01552
pthread_mutex_lock
[call site]
01553
hts_tpool_process_shutdown_locked
[function]
[call site]
01554
pthread_mutex_unlock
[call site]
01555
__assert_fail
[call site]
01556
pthread_cond_broadcast
[call site]
01557
pthread_mutex_unlock
[call site]
01558
pthread_mutex_lock
[call site]
01559
hts_tpool_process_destroy
[function]
[call site]
01560
pthread_mutex_unlock
[call site]
01561
pthread_mutex_lock
[call site]
01562
hts_tpool_process_shutdown_locked
[function]
[call site]
01563
pthread_mutex_unlock
[call site]
01564
pthread_mutex_unlock
[call site]
01565
pthread_attr_destroy
[call site]
01566
__errno_location
[call site]
01567
__errno_location
[call site]
01568
strerror
[call site]
01569
hts_log
[function]
[call site]
01570
pthread_mutex_unlock
[call site]
01571
pthread_join
[call site]
01572
pthread_cond_destroy
[call site]
01573
pthread_mutex_destroy
[call site]
01574
pthread_attr_destroy
[call site]
01575
__errno_location
[call site]
01576
hts_tpool_process_init
[function]
[call site]
01577
pthread_cond_init
[call site]
01578
pthread_cond_init
[call site]
01579
pthread_cond_init
[call site]
01580
pthread_cond_init
[call site]
01581
hts_tpool_process_attach
[function]
[call site]
01582
pthread_mutex_lock
[call site]
01583
__assert_fail
[call site]
01584
pthread_mutex_unlock
[call site]
01585
hts_tpool_size
[function]
[call site]
01586
hts_tpool_process_init
[function]
[call site]
01587
hts_log
[function]
[call site]
01588
__errno_location
[call site]
01589
bgzf_hopen
[function]
[call site]
01590
__errno_location
[call site]
01591
hts_process_opts
[function]
[call site]
01592
hts_parse_opt_list
[function]
[call site]
01593
strncpy
[call site]
01594
hts_opt_add
[function]
[call site]
01595
strdup
[call site]
01596
strchr
[call site]
01597
strcmp
[call site]
01598
strcmp
[call site]
01599
atoi
[call site]
01600
strcmp
[call site]
01601
strcmp
[call site]
01602
atoi
[call site]
01603
strcmp
[call site]
01604
strcmp
[call site]
01605
atoi
[call site]
01606
strcmp
[call site]
01607
strcmp
[call site]
01608
atoi
[call site]
01609
strcmp
[call site]
01610
strcmp
[call site]
01611
atoi
[call site]
01612
strcmp
[call site]
01613
strcmp
[call site]
01614
atoi
[call site]
01615
strcmp
[call site]
01616
strcmp
[call site]
01617
atoi
[call site]
01618
strcmp
[call site]
01619
strcmp
[call site]
01620
atoi
[call site]
01621
strcmp
[call site]
01622
strcmp
[call site]
01623
atoi
[call site]
01624
strcmp
[call site]
01625
strcmp
[call site]
01626
atoi
[call site]
01627
strcmp
[call site]
01628
strcmp
[call site]
01629
atoi
[call site]
01630
strcmp
[call site]
01631
strcmp
[call site]
01632
atoi
[call site]
01633
strcmp
[call site]
01634
strcmp
[call site]
01635
atoi
[call site]
01636
strcmp
[call site]
01637
strcmp
[call site]
01638
atoi
[call site]
01639
strcmp
[call site]
01640
atoi
[call site]
01641
strcmp
[call site]
01642
strcmp
[call site]
01643
strcmp
[call site]
01644
strcmp
[call site]
01645
strcmp
[call site]
01646
strcmp
[call site]
01647
strcmp
[call site]
01648
strcmp
[call site]
01649
strcmp
[call site]
01650
strcmp
[call site]
01651
strcmp
[call site]
01652
strcmp
[call site]
01653
strcmp
[call site]
01654
strcmp
[call site]
01655
atoi
[call site]
01656
strcmp
[call site]
01657
strcmp
[call site]
01658
atoi
[call site]
01659
strcmp
[call site]
01660
strcmp
[call site]
01661
strtol
[call site]
01662
hts_log
[function]
[call site]
01663
strcmp
[call site]
01664
strcmp
[call site]
01665
strtol
[call site]
01666
strcmp
[call site]
01667
strcmp
[call site]
01668
strtol
[call site]
01669
strcmp
[call site]
01670
strcmp
[call site]
01671
strcmp
[call site]
01672
strcmp
[call site]
01673
atoi
[call site]
01674
strcmp
[call site]
01675
strcmp
[call site]
01676
atoi
[call site]
01677
strcmp
[call site]
01678
strcmp
[call site]
01679
strtol
[call site]
01680
strcmp
[call site]
01681
strcmp
[call site]
01682
strtol
[call site]
01683
strcmp
[call site]
01684
strcmp
[call site]
01685
strcmp
[call site]
01686
strcmp
[call site]
01687
strcmp
[call site]
01688
strcmp
[call site]
01689
strcmp
[call site]
01690
strcmp
[call site]
01691
strcmp
[call site]
01692
strcmp
[call site]
01693
strcmp
[call site]
01694
strcmp
[call site]
01695
strcmp
[call site]
01696
strcmp
[call site]
01697
strcmp
[call site]
01698
strcmp
[call site]
01699
hts_log
[function]
[call site]
01700
hts_opt_apply
[function]
[call site]
01701
strdup
[call site]
01702
hts_set_opt
[function]
[call site]
01703
hts_set_threads
[function]
[call site]
01704
sam_set_threads
[function]
[call site]
01705
hts_tpool_init
[function]
[call site]
01706
sam_set_thread_pool
[function]
[call site]
01707
sam_state_create
[function]
[call site]
01708
calloc
[call site]
01709
pthread_mutex_init
[call site]
01710
pthread_mutex_init
[call site]
01711
pthread_cond_init
[call site]
01712
hts_tpool_size
[function]
[call site]
01713
hts_tpool_process_init
[function]
[call site]
01714
sam_state_destroy
[function]
[call site]
01715
pthread_mutex_lock
[call site]
01716
pthread_cond_signal
[call site]
01717
hts_tpool_wake_dispatch
[function]
[call site]
01718
hts_tpool_wake_dispatch
[function]
[call site]
01719
pthread_mutex_unlock
[call site]
01720
hts_usleep
[function]
[call site]
01721
pthread_mutex_lock
[call site]
01722
pthread_mutex_unlock
[call site]
01723
hts_tpool_dispatch
[function]
[call site]
01724
hts_tpool_dispatch3
[function]
[call site]
01725
sam_format_worker
[function]
[call site]
01726
pthread_mutex_lock
[call site]
01727
pthread_mutex_unlock
[call site]
01728
calloc
[call site]
01729
sam_state_err
[function]
[call site]
01730
pthread_mutex_lock
[call site]
01731
pthread_mutex_unlock
[call site]
01732
sam_format1_append
[function]
[call site]
01733
kputsn_
[function]
[call site]
01734
__errno_location
[call site]
01735
ks_resize
[function]
[call site]
01736
kputc_
[function]
[call site]
01737
ks_resize
[function]
[call site]
01738
kputw
[function]
[call site]
01739
ks_resize
[function]
[call site]
01740
kputuw
[function]
[call site]
01741
ks_resize
[function]
[call site]
01742
ks_resize
[function]
[call site]
01743
kputc_
[function]
[call site]
01744
kputs
[function]
[call site]
01745
kputc_
[function]
[call site]
01746
kputsn_
[function]
[call site]
01747
kputll
[function]
[call site]
01748
ks_resize
[function]
[call site]
01749
kputuw
[function]
[call site]
01750
kputc_
[function]
[call site]
01751
kputw
[function]
[call site]
01752
kputc_
[function]
[call site]
01753
kputw
[function]
[call site]
01754
kputc_
[function]
[call site]
01755
kputc_
[function]
[call site]
01756
kputc_
[function]
[call site]
01757
kputsn_
[function]
[call site]
01758
kputsn_
[function]
[call site]
01759
kputs
[function]
[call site]
01760
kputc_
[function]
[call site]
01761
kputll
[function]
[call site]
01762
kputc_
[function]
[call site]
01763
kputll
[function]
[call site]
01764
kputc_
[function]
[call site]
01765
ks_resize
[function]
[call site]
01766
nibble2base
[function]
[call site]
01767
add33
[function]
[call site]
01768
kputsn_
[function]
[call site]
01769
kputc_
[function]
[call site]
01770
sam_format_aux1
[function]
[call site]
01771
kputsn_
[function]
[call site]
01772
kputc_
[function]
[call site]
01773
kputsn_
[function]
[call site]
01774
kputw
[function]
[call site]
01775
kputsn_
[function]
[call site]
01776
kputw
[function]
[call site]
01777
kputsn_
[function]
[call site]
01778
le_to_u16
[function]
[call site]
01779
kputuw
[function]
[call site]
01780
kputsn_
[function]
[call site]
01781
le_to_i16
[function]
[call site]
01782
le_to_u16
[function]
[call site]
01783
kputw
[function]
[call site]
01784
kputsn_
[function]
[call site]
01785
le_to_u32
[function]
[call site]
01786
kputuw
[function]
[call site]
01787
kputsn_
[function]
[call site]
01788
le_to_i32
[function]
[call site]
01789
le_to_u32
[function]
[call site]
01790
kputw
[function]
[call site]
01791
kputsn_
[function]
[call site]
01792
kputc_
[function]
[call site]
01793
le_to_float
[function]
[call site]
01794
le_to_u32
[function]
[call site]
01795
ksprintf
[function]
[call site]
01796
le_to_double
[function]
[call site]
01797
le_to_u64
[function]
[call site]
01798
ksprintf
[function]
[call site]
01799
kputc_
[function]
[call site]
01800
kputc_
[function]
[call site]
01801
kputc_
[function]
[call site]
01802
kputsn
[function]
[call site]
01803
le_to_u32
[function]
[call site]
01804
kputsn_
[function]
[call site]
01805
kputc
[function]
[call site]
01806
ks_expand
[function]
[call site]
01807
__errno_location
[call site]
01808
ks_resize
[function]
[call site]
01809
kputw
[function]
[call site]
01810
ks_expand
[function]
[call site]
01811
kputuw
[function]
[call site]
01812
ks_expand
[function]
[call site]
01813
le_to_i16
[function]
[call site]
01814
kputw
[function]
[call site]
01815
ks_expand
[function]
[call site]
01816
le_to_u16
[function]
[call site]
01817
kputuw
[function]
[call site]
01818
ks_expand
[function]
[call site]
01819
le_to_i32
[function]
[call site]
01820
kputw
[function]
[call site]
01821
ks_expand
[function]
[call site]
01822
le_to_u32
[function]
[call site]
01823
kputuw
[function]
[call site]
01824
ks_expand
[function]
[call site]
01825
le_to_float
[function]
[call site]
01826
kputd
[function]
[call site]
01827
__errno_location
[call site]
01828
hts_log
[function]
[call site]
01829
__errno_location
[call site]
01830
kputsn
[function]
[call site]
01831
hts_log
[function]
[call site]
01832
__errno_location
[call site]
01833
hts_log
[function]
[call site]
01834
__errno_location
[call site]
01835
__errno_location
[call site]
01836
sam_state_err
[function]
[call site]
01837
kputc
[function]
[call site]
01838
pthread_mutex_lock
[call site]
01839
pthread_mutex_unlock
[call site]
01840
hts_tpool_process_flush
[function]
[call site]
01841
pthread_mutex_lock
[call site]
01842
pthread_mutex_unlock
[call site]
01843
hts_tpool_process_empty
[function]
[call site]
01844
hts_usleep
[function]
[call site]
01845
pthread_mutex_lock
[call site]
01846
hts_tpool_process_is_shutdown
[function]
[call site]
01847
pthread_mutex_unlock
[call site]
01848
hts_tpool_process_shutdown
[function]
[call site]
01849
pthread_join
[call site]
01850
hts_tpool_process_destroy
[function]
[call site]
01851
hts_tpool_destroy
[function]
[call site]
01852
pthread_mutex_destroy
[call site]
01853
pthread_mutex_destroy
[call site]
01854
pthread_cond_destroy
[call site]
01855
sam_free_sp_bams
[function]
[call site]
01856
sam_free_sp_bams
[function]
[call site]
01857
bam_hdr_destroy
[function]
[call site]
01858
sam_hdr_destroy
[function]
[call site]
01859
bgzf_thread_pool
[function]
[call site]
01860
calloc
[call site]
01861
hts_tpool_size
[function]
[call site]
01862
hts_tpool_process_init
[function]
[call site]
01863
hts_tpool_process_ref_incr
[function]
[call site]
01864
pthread_mutex_lock
[call site]
01865
pthread_mutex_unlock
[call site]
01866
pool_create
[function]
[call site]
01867
pthread_mutex_init
[call site]
01868
pthread_mutex_init
[call site]
01869
pthread_mutex_init
[call site]
01870
pthread_cond_init
[call site]
01871
pthread_create
[call site]
01872
hts_tpool_destroy
[function]
[call site]
01873
hts_get_bgzfp
[function]
[call site]
01874
bgzf_mt
[function]
[call site]
01875
hts_tpool_init
[function]
[call site]
01876
bgzf_thread_pool
[function]
[call site]
01877
hts_tpool_destroy
[function]
[call site]
01878
hts_set_opt
[function]
[call site]
01879
hts_hfile
[function]
[call site]
01880
bgzf_hfile
[function]
[call site]
01881
cram_hfile
[function]
[call site]
01882
bgzf_hfile
[function]
[call site]
01883
hfile_set_blksize
[function]
[call site]
01884
hts_log
[function]
[call site]
01885
hts_log
[function]
[call site]
01886
hts_set_thread_pool
[function]
[call site]
01887
sam_set_thread_pool
[function]
[call site]
01888
hts_get_bgzfp
[function]
[call site]
01889
bgzf_thread_pool
[function]
[call site]
01890
hts_set_opt
[function]
[call site]
01891
hts_set_cache_size
[function]
[call site]
01892
hts_get_bgzfp
[function]
[call site]
01893
bgzf_set_cache_size
[function]
[call site]
01894
fastq_state_set
[function]
[call site]
01895
fastq_state_init
[function]
[call site]
01896
strcmp
[call site]
01900
kh_init_tag
[function]
[call site]
01901
calloc
[call site]
01902
strlen
[call site]
01903
hts_log
[function]
[call site]
01904
kh_put_tag
[function]
[call site]
01905
kh_resize_tag
[function]
[call site]
01906
realloc
[call site]
01907
strncpy
[call site]
01908
strcmp
[call site]
01909
__ctype_b_loc
[call site]
01910
isalnum_c
[function]
[call site]
01911
strncpy
[call site]
01912
hts_log
[function]
[call site]
01913
regfree
[call site]
01914
regcomp
[call site]
01915
hts_log
[function]
[call site]
01916
fastq_state_set
[function]
[call site]
01917
fastq_state_set
[function]
[call site]
01918
cram_set_option
[function]
[call site]
01919
hts_set_filter_expression
[function]
[call site]
01920
hts_filter_free
[function]
[call site]
01921
regfree
[call site]
01922
hts_filter_init
[function]
[call site]
01923
calloc
[call site]
01924
strlen
[call site]
01925
hts_malloc_ps
[function]
[call site]
01926
hts_add_sat2
[function]
[call site]
01927
hts_prod_sat2
[function]
[call site]
01928
hts_malloc
[function]
[call site]
01929
cram_set_voption
[function]
[call site]
01930
hts_set_opt
[function]
[call site]
01931
hts_opt_free
[function]
[call site]
01932
hts_opt_free
[function]
[call site]
01933
hclose_abruptly
[function]
[call site]
01934
hts_log
[function]
[call site]
01935
hclose_abruptly
[function]
[call site]
01936
hclose
[function]
[call site]
01937
abort
[call site]
01938
hts_close
[function]
[call site]
01939
__errno_location
[call site]
01940
bgzf_close
[function]
[call site]
01941
cram_eof
[function]
[call site]
01942
hts_log
[function]
[call site]
01943
cram_close
[function]
[call site]
01944
cram_update_curr_slice
[function]
[call site]
01945
cram_flush_container_mt
[function]
[call site]
01946
pthread_mutex_lock
[call site]
01947
reset_metrics
[function]
[call site]
01948
pthread_mutex_unlock
[call site]
01949
hts_tpool_process_flush
[function]
[call site]
01950
pthread_mutex_lock
[call site]
01951
pthread_mutex_unlock
[call site]
01952
cram_flush_container
[function]
[call site]
01953
cram_encode_container
[function]
[call site]
01954
pthread_mutex_lock
[call site]
01955
hts_log
[function]
[call site]
01956
hts_log
[function]
[call site]
01957
pthread_mutex_unlock
[call site]
01958
pthread_mutex_lock
[call site]
01959
pthread_mutex_unlock
[call site]
01960
cram_get_ref
[function]
[call site]
01961
pthread_mutex_lock
[call site]
01962
hts_log
[function]
[call site]
01963
pthread_mutex_unlock
[call site]
01964
pthread_mutex_lock
[call site]
01965
hts_log
[function]
[call site]
01966
cram_populate_ref
[function]
[call site]
01967
getenv
[call site]
01968
getenv
[call site]
01969
hts_log
[function]
[call site]
01970
sam_hrecs_find_type_id
[function]
[call site]
01971
sam_hrecs_find_key
[function]
[call site]
01972
hts_log
[function]
[call site]
01973
expand_cache_path
[function]
[call site]
01974
strchr
[call site]
01975
strncpy
[call site]
01976
strlen
[call site]
01977
strcpy
[call site]
01978
strtol
[call site]
01979
strlen
[call site]
01980
strncpy
[call site]
01981
strlen
[call site]
01982
strcpy
[call site]
01983
strlen
[call site]
01984
strcpy
[call site]
01985
stat
[call site]
01986
stat
[call site]
01987
bgzf_open
[function]
[call site]
01988
string_dup
[function]
[call site]
01989
bgzf_close
[function]
[call site]
01990
open_path_mfile
[function]
[call site]
01991
getenv
[call site]
01992
tokenise_search_path
[function]
[call site]
01993
strlen
[call site]
01994
strncmp
[call site]
01995
strncmp
[call site]
01996
strncmp
[call site]
01997
strncmp
[call site]
01998
strncmp
[call site]
01999
strncmp
[call site]
02000
strncmp
[call site]
02001
strncmp
[call site]
02002
strncmp
[call site]
02003
strncmp
[call site]
02004
find_file_url
[function]
[call site]
02005
expand_path
[function]
[call site]
02006
strlen
[call site]
02007
strlen
[call site]
02008
hts_log
[function]
[call site]
02009
strchr
[call site]
02010
strtol
[call site]
02011
hopen
[function]
[call site]
02012
__errno_location
[call site]
02013
__errno_location
[call site]
02014
strerror
[call site]
02015
hts_log
[function]
[call site]
02016
mfcreate
[function]
[call site]
02017
hread
[function]
[call site]
02018
mfwrite
[function]
[call site]
02019
realloc
[call site]
02020
hclose_abruptly
[function]
[call site]
02021
hclose
[function]
[call site]
02022
__errno_location
[call site]
02023
strerror
[call site]
02024
hts_log
[function]
[call site]
02025
mrewind
[function]
[call site]
02026
mfdestroy
[function]
[call site]
02027
strncmp
[call site]
02028
hisremote
[function]
[call site]
02029
find_file_url
[function]
[call site]
02030
find_file_dir
[function]
[call site]
02031
expand_path
[function]
[call site]
02032
is_file
[function]
[call site]
02033
stat
[call site]
02034
mfopen
[function]
[call site]
02035
fopen
[call site]
02036
mfreopen
[function]
[call site]
02037
strchr
[call site]
02038
strchr
[call site]
02039
strchr
[call site]
02040
strchr
[call site]
02041
strchr
[call site]
02042
strchr
[call site]
02043
strchr
[call site]
02044
mfcreate
[function]
[call site]
02045
mfmmap
[function]
[call site]
02046
mfload
[function]
[call site]
02050
stat
[call site]
02051
realloc
[call site]
02052
fread
[call site]
02053
feof
[call site]
02054
fseek
[call site]
02055
mfcreate
[function]
[call site]
02056
hts_log
[function]
[call site]
02057
fseek
[call site]
02058
strlen
[call site]
02059
strcpy
[call site]
02060
strrchr
[call site]
02061
find_file_dir
[function]
[call site]
02062
mfsteal
[function]
[call site]
02063
mfdetach
[function]
[call site]
02064
mfflush
[function]
[call site]
02065
fclose
[call site]
02066
mfdestroy
[function]
[call site]
02067
sam_hrecs_find_key
[function]
[call site]
02068
strstr
[call site]
02069
strncmp
[call site]
02070
hts_log
[function]
[call site]
02071
strncmp
[call site]
02072
bgzf_close
[function]
[call site]
02073
refs_load_fai
[function]
[call site]
02074
sanitise_SQ_lines
[function]
[call site]
02075
bgzf_close
[function]
[call site]
02076
refs2id
[function]
[call site]
02077
expand_cache_path
[function]
[call site]
02078
hts_log
[function]
[call site]
02079
mkdir_prefix
[function]
[call site]
02080
strrchr
[call site]
02081
is_directory
[function]
[call site]
02082
stat
[call site]
02083
mkdir
[call site]
02084
chmod
[call site]
02085
mkdir_prefix
[function]
[call site]
02086
mkdir
[call site]
02087
chmod
[call site]
02088
hts_open_tmpfile
[function]
[call site]
02089
getpid
[call site]
02090
time
[call site]
02091
clock
[call site]
02092
ks_clear
[function]
[call site]
02093
ksprintf
[function]
[call site]
02094
hopen
[function]
[call site]
02095
__errno_location
[call site]
02096
perror
[call site]
02097
hts_md5_init
[function]
[call site]
02098
hts_md5_reset
[function]
[call site]
02099
hclose_abruptly
[function]
[call site]
02100
unlink
[call site]
02101
hts_md5_update
[function]
[call site]
02102
body
[function]
[call site]
02103
body
[function]
[call site]
02104
hts_md5_final
[function]
[call site]
02105
body
[function]
[call site]
02106
body
[function]
[call site]
02107
hts_md5_destroy
[function]
[call site]
02108
hts_md5_hex
[function]
[call site]
02109
strncmp
[call site]
02110
hts_log
[function]
[call site]
02111
hclose_abruptly
[function]
[call site]
02112
unlink
[call site]
02113
hwrite
[function]
[call site]
02114
hclose
[function]
[call site]
02115
chmod
[call site]
02116
rename
[call site]
02117
__errno_location
[call site]
02118
strerror
[call site]
02119
hts_log
[function]
[call site]
02120
unlink
[call site]
02121
hts_log
[function]
[call site]
02122
hts_log
[function]
[call site]
02123
pthread_mutex_unlock
[call site]
02124
pthread_mutex_unlock
[call site]
02125
cram_ref_incr_locked
[function]
[call site]
02126
cram_ref_incr_locked
[function]
[call site]
02127
cram_ref_load
[function]
[call site]
02128
__assert_fail
[call site]
02129
__assert_fail
[call site]
02130
ref_entry_free_seq
[function]
[call site]
02131
strcmp
[call site]
02132
bgzf_close
[function]
[call site]
02133
bgzf_open_ref
[function]
[call site]
02134
load_ref_portion
[function]
[call site]
02135
bgzf_useek
[function]
[call site]
02136
hseek
[function]
[call site]
02137
bgzf_read_block
[function]
[call site]
02138
bgzf_seek_common
[function]
[call site]
02139
pthread_mutex_lock
[call site]
02140
pthread_cond_signal
[call site]
02141
hts_tpool_wake_dispatch
[function]
[call site]
02142
pthread_cond_wait
[call site]
02143
pthread_cond_signal
[call site]
02144
abort
[call site]
02145
__errno_location
[call site]
02146
pthread_mutex_unlock
[call site]
02147
pthread_mutex_unlock
[call site]
02148
hseek
[function]
[call site]
02149
bgzf_read_block
[function]
[call site]
02150
__assert_fail
[call site]
02151
perror
[call site]
02152
bgzf_read
[function]
[call site]
02153
__assert_fail
[call site]
02154
bgzf_read_block
[function]
[call site]
02155
hts_log
[function]
[call site]
02156
bgzf_htell
[function]
[call site]
02157
hts_log
[function]
[call site]
02158
bgzf_htell
[function]
[call site]
02159
perror
[call site]
02160
isspace_c
[function]
[call site]
02161
isspace_c
[function]
[call site]
02162
isspace_c
[function]
[call site]
02163
hts_log
[function]
[call site]
02164
toupper_c
[function]
[call site]
02165
toupper
[call site]
02166
pthread_mutex_unlock
[call site]
02167
pthread_mutex_unlock
[call site]
02168
cram_ref_incr_locked
[function]
[call site]
02169
pthread_mutex_unlock
[call site]
02170
pthread_mutex_unlock
[call site]
02171
pthread_mutex_unlock
[call site]
02172
pthread_mutex_unlock
[call site]
02173
strcmp
[call site]
02174
bgzf_close
[function]
[call site]
02175
bgzf_open_ref
[function]
[call site]
02176
pthread_mutex_unlock
[call site]
02177
pthread_mutex_unlock
[call site]
02178
load_ref_portion
[function]
[call site]
02179
pthread_mutex_unlock
[call site]
02180
pthread_mutex_unlock
[call site]
02181
pthread_mutex_unlock
[call site]
02182
pthread_mutex_unlock
[call site]
02183
hts_log
[function]
[call site]
02184
hts_log
[function]
[call site]
02185
pthread_mutex_lock
[call site]
02186
pthread_mutex_unlock
[call site]
02187
hts_log
[function]
[call site]
02188
hts_log
[function]
[call site]
02189
hts_log
[function]
[call site]
02190
hts_log
[function]
[call site]
02191
pthread_mutex_lock
[call site]
02192
pthread_mutex_unlock
[call site]
02193
validate_md5
[function]
[call site]
02194
sam_hrecs_find_type_id
[function]
[call site]
02195
sam_hrecs_find_key
[function]
[call site]
02196
hts_md5_init
[function]
[call site]
02197
hts_md5_update
[function]
[call site]
02198
hts_md5_final
[function]
[call site]
02199
hts_md5_destroy
[function]
[call site]
02200
hts_md5_hex
[function]
[call site]
02201
strcmp
[call site]
02202
hts_log
[function]
[call site]
02203
hts_log
[function]
[call site]
02204
cram_ref_incr
[function]
[call site]
02205
pthread_mutex_lock
[call site]
02206
cram_ref_incr_locked
[function]
[call site]
02207
pthread_mutex_unlock
[call site]
02208
cram_get_ref
[function]
[call site]
02209
validate_md5
[function]
[call site]
02210
hts_log
[function]
[call site]
02211
__assert_fail
[call site]
02212
lossy_read_names
[function]
[call site]
02213
kh_init_m_s2u64
[function]
[call site]
02214
calloc
[call site]
02215
expected_template_count
[function]
[call site]
02216
bam_aux_get
[function]
[call site]
02217
bam_aux_first
[function]
[call site]
02218
__errno_location
[call site]
02219
skip_aux
[function]
[call site]
02220
aux_type2size
[function]
[call site]
02221
memchr
[call site]
02222
aux_type2size
[function]
[call site]
02223
le_to_u32
[function]
[call site]
02224
bam_aux_next
[function]
[call site]
02225
skip_aux
[function]
[call site]
02226
__errno_location
[call site]
02227
hts_log
[function]
[call site]
02228
__errno_location
[call site]
02229
hts_log
[function]
[call site]
02230
__errno_location
[call site]
02231
bam_data_end
[function]
[call site]
02232
bam_aux2i_end
[function]
[call site]
02233
__errno_location
[call site]
02234
__errno_location
[call site]
02235
__errno_location
[call site]
02236
le_to_i16
[function]
[call site]
02237
le_to_u16
[function]
[call site]
02238
__errno_location
[call site]
02239
le_to_u16
[function]
[call site]
02240
__errno_location
[call site]
02241
le_to_i32
[function]
[call site]
02242
le_to_u32
[function]
[call site]
02243
__errno_location
[call site]
02244
le_to_u32
[function]
[call site]
02245
__errno_location
[call site]
02246
bam_aux_get
[function]
[call site]
02247
kh_put_m_s2u64
[function]
[call site]
02248
kh_resize_m_s2u64
[function]
[call site]
02249
realloc
[call site]
02250
__ac_FNV1a_hash_string
[function]
[call site]
02251
strcmp
[call site]
02252
kh_get_m_s2u64
[function]
[call site]
02253
kh_destroy_m_s2u64
[function]
[call site]
02254
cram_generate_reference
[function]
[call site]
02255
extend_ref
[function]
[call site]
02256
realloc
[call site]
02257
hts_realloc_p
[function]
[call site]
02258
hts_log
[function]
[call site]
02259
cram_add_to_ref
[function]
[call site]
02260
bam_aux_get
[function]
[call site]
02261
cram_add_to_ref_MD
[function]
[call site]
02262
bam_cigar2rlen
[function]
[call site]
02263
extend_ref
[function]
[call site]
02264
__ctype_b_loc
[call site]
02265
hts_str2uint
[function]
[call site]
02266
extend_ref
[function]
[call site]
02267
next_cigar_op
[function]
[call site]
02268
hts_log
[function]
[call site]
02269
__ctype_b_loc
[call site]
02270
extend_ref
[function]
[call site]
02271
next_cigar_op
[function]
[call site]
02272
hts_log
[function]
[call site]
02273
extend_ref
[function]
[call site]
02274
next_cigar_op
[function]
[call site]
02275
hts_log
[function]
[call site]
02276
extend_ref
[function]
[call site]
02277
hts_log
[function]
[call site]
02278
hts_log
[function]
[call site]
02279
pthread_mutex_lock
[call site]
02280
pthread_mutex_unlock
[call site]
02281
pthread_mutex_lock
[call site]
02282
pthread_mutex_unlock
[call site]
02283
cram_ref_decr
[function]
[call site]
02284
pthread_mutex_lock
[call site]
02285
cram_ref_decr_locked
[function]
[call site]
02286
__assert_fail
[call site]
02287
ref_entry_free_seq
[function]
[call site]
02288
pthread_mutex_unlock
[call site]
02289
cram_get_ref
[function]
[call site]
02290
hts_log
[function]
[call site]
02291
validate_md5
[function]
[call site]
02292
process_one_read
[function]
[call site]
02293
bam_aux_get
[function]
[call site]
02294
bam_aux_get
[function]
[call site]
02295
cram_stats_add
[function]
[call site]
02296
kh_init_m_i2i
[function]
[call site]
02297
calloc
[call site]
02298
kh_put_m_i2i
[function]
[call site]
02299
kh_resize_m_i2i
[function]
[call site]
02300
realloc
[call site]
02301
cram_stats_add
[function]
[call site]
02302
cram_stats_add
[function]
[call site]
02303
block_grow
[function]
[call site]
02304
block_resize
[function]
[call site]
02305
block_resize_exact
[function]
[call site]
02306
realloc
[call site]
02307
block_grow
[function]
[call site]
02308
nibble2base
[function]
[call site]
02309
hts_log
[function]
[call site]
02310
hts_realloc_p
[function]
[call site]
02311
hts_log
[function]
[call site]
02312
kputuw
[function]
[call site]
02313
ks_resize
[function]
[call site]
02314
ks_resize
[function]
[call site]
02315
kputc
[function]
[call site]
02316
ks_resize
[function]
[call site]
02317
cram_add_substitution
[function]
[call site]
02318
cram_stats_add
[function]
[call site]
02319
cram_stats_add
[function]
[call site]
02320
cram_stats_add
[function]
[call site]
02321
block_append_char
[function]
[call site]
02322
block_grow
[function]
[call site]
02323
cram_add_feature
[function]
[call site]
02324
hts_realloc_p
[function]
[call site]
02325
cram_stats_add
[function]
[call site]
02326
cram_stats_add
[function]
[call site]
02327
cram_stats_add
[function]
[call site]
02328
cram_add_bases
[function]
[call site]
02329
cram_add_feature
[function]
[call site]
02330
cram_add_base
[function]
[call site]
02331
cram_stats_add
[function]
[call site]
02332
cram_stats_add
[function]
[call site]
02333
block_append_char
[function]
[call site]
02334
cram_add_feature
[function]
[call site]
02335
cram_add_base
[function]
[call site]
02336
kputuw
[function]
[call site]
02337
kputc_
[function]
[call site]
02338
ks_resize
[function]
[call site]
02339
kputsn
[function]
[call site]
02340
ks_resize
[function]
[call site]
02341
cram_add_deletion
[function]
[call site]
02342
cram_stats_add
[function]
[call site]
02343
cram_add_feature
[function]
[call site]
02344
cram_add_skip
[function]
[call site]
02345
cram_stats_add
[function]
[call site]
02346
cram_add_feature
[function]
[call site]
02347
cram_add_insertion
[function]
[call site]
02348
cram_stats_add
[function]
[call site]
02349
block_append
[function]
[call site]
02350
block_grow
[function]
[call site]
02351
block_append_char
[function]
[call site]
02352
block_append_char
[function]
[call site]
02353
cram_add_feature
[function]
[call site]
02354
cram_add_quality
[function]
[call site]
02355
cram_stats_add
[function]
[call site]
02356
block_append_char
[function]
[call site]
02357
cram_add_feature
[function]
[call site]
02358
cram_add_softclip
[function]
[call site]
02359
block_append
[function]
[call site]
02360
block_append_char
[function]
[call site]
02361
block_append
[function]
[call site]
02362
block_append_char
[function]
[call site]
02363
block_append_char
[function]
[call site]
02364
cram_add_feature
[function]
[call site]
02365
cram_add_quality
[function]
[call site]
02366
cram_add_quality
[function]
[call site]
02367
cram_add_hardclip
[function]
[call site]
02368
cram_stats_add
[function]
[call site]
02369
cram_add_feature
[function]
[call site]
02370
cram_add_pad
[function]
[call site]
02371
cram_stats_add
[function]
[call site]
02372
cram_add_feature
[function]
[call site]
02373
hts_log
[function]
[call site]
02374
hts_log
[function]
[call site]
02375
cram_stats_add
[function]
[call site]
02376
kputuw
[function]
[call site]
02377
cram_stats_add
[function]
[call site]
02378
cram_encode_aux
[function]
[call site]
02379
bam_data_end
[function]
[call site]
02380
hts_malloc_ps
[function]
[call site]
02381
hts_add_sat2
[function]
[call site]
02382
hts_prod_sat2
[function]
[call site]
02383
hts_malloc
[function]
[call site]
02384
hts_log
[function]
[call site]
02385
sam_hrecs_find_rg
[function]
[call site]
02386
kh_get_m_s2i
[function]
[call site]
02387
block_append
[function]
[call site]
02388
hts_log
[function]
[call site]
02389
strncasecmp
[call site]
02390
hts_log
[function]
[call site]
02391
block_append
[function]
[call site]
02392
bam_aux2i_end
[function]
[call site]
02393
hts_log
[function]
[call site]
02394
block_append
[function]
[call site]
02395
block_append
[function]
[call site]
02396
kh_put_m_tagmap
[function]
[call site]
02397
kh_resize_m_tagmap
[function]
[call site]
02398
realloc
[call site]
02399
pthread_mutex_lock
[call site]
02400
kh_put_m_metrics
[function]
[call site]
02401
kh_resize_m_metrics
[function]
[call site]
02402
realloc
[call site]
02403
pthread_mutex_unlock
[call site]
02404
cram_new_metrics
[function]
[call site]
02405
kh_del_m_metrics
[function]
[call site]
02406
pthread_mutex_unlock
[call site]
02407
pthread_mutex_unlock
[call site]
02408
calloc
[call site]
02409
cram_encoder_init
[function]
[call site]
02410
cram_encoding2str
[function]
[call site]
02411
hts_log
[function]
[call site]
02412
cram_encoding2str
[function]
[call site]
02413
hts_log
[function]
[call site]
02414
abort
[call site]
02415
cram_stats_add
[function]
[call site]
02416
cram_stats_encoding
[function]
[call site]
02417
hts_realloc_p
[function]
[call site]
02418
hts_realloc_p
[function]
[call site]
02419
hts_realloc_p
[function]
[call site]
02420
hts_realloc_p
[function]
[call site]
02421
__assert_fail
[call site]
02422
cram_encoder_init
[function]
[call site]
02423
cram_stats_add
[function]
[call site]
02424
cram_stats_encoding
[function]
[call site]
02425
cram_encoder_init
[function]
[call site]
02426
cram_stats_add
[function]
[call site]
02427
cram_stats_encoding
[function]
[call site]
02428
cram_encoder_init
[function]
[call site]
02429
cram_encoder_init
[function]
[call site]
02430
hts_log
[function]
[call site]
02431
pthread_mutex_lock
[call site]
02432
pthread_mutex_unlock
[call site]
02433
cram_new_block
[function]
[call site]
02434
block_append_char
[function]
[call site]
02435
cram_new_block
[function]
[call site]
02436
block_append
[function]
[call site]
02437
cram_new_block
[function]
[call site]
02438
block_append
[function]
[call site]
02439
cram_new_block
[function]
[call site]
02440
block_append
[function]
[call site]
02441
cram_new_block
[function]
[call site]
02442
hts_log
[function]
[call site]
02443
cram_new_block
[function]
[call site]
02444
cram_new_block
[function]
[call site]
02445
hts_log
[function]
[call site]
02446
hts_log
[function]
[call site]
02447
block_append_char
[function]
[call site]
02448
kh_put_m_s2i
[function]
[call site]
02449
kh_resize_m_s2i
[function]
[call site]
02450
__ac_FNV1a_hash_string
[function]
[call site]
02451
string_ndup
[function]
[call site]
02452
cram_stats_add
[function]
[call site]
02453
sam_hrecs_find_rg
[function]
[call site]
02454
cram_stats_add
[function]
[call site]
02455
block_grow
[function]
[call site]
02456
block_grow
[function]
[call site]
02457
cram_stats_add
[function]
[call site]
02458
kh_put_m_s2i
[function]
[call site]
02459
string_ndup
[function]
[call site]
02460
cram_stats_add
[function]
[call site]
02461
cram_stats_add
[function]
[call site]
02462
cram_stats_del
[function]
[call site]
02463
__assert_fail
[call site]
02464
kh_get_m_i2i
[function]
[call site]
02465
kh_del_m_i2i
[function]
[call site]
02466
hts_log
[function]
[call site]
02467
cram_stats_del
[function]
[call site]
02468
cram_stats_del
[function]
[call site]
02469
cram_stats_del
[function]
[call site]
02470
cram_stats_add
[function]
[call site]
02471
cram_stats_del
[function]
[call site]
02472
cram_stats_add
[function]
[call site]
02473
cram_stats_add
[function]
[call site]
02474
cram_stats_add
[function]
[call site]
02475
cram_stats_add
[function]
[call site]
02476
cram_stats_add
[function]
[call site]
02477
cram_stats_add
[function]
[call site]
02478
cram_stats_add
[function]
[call site]
02479
cram_stats_add
[function]
[call site]
02480
add_read_names
[function]
[call site]
02481
block_append
[function]
[call site]
02482
block_append
[function]
[call site]
02483
cram_stats_add
[function]
[call site]
02484
hts_prod_sat2
[function]
[call site]
02485
hts_calloc
[function]
[call site]
02486
__assert_fail
[call site]
02487
cram_ref_decr
[function]
[call site]
02488
pthread_mutex_lock
[call site]
02489
pthread_mutex_unlock
[call site]
02490
cram_stats_encoding
[function]
[call site]
02491
pthread_mutex_lock
[call site]
02492
pthread_mutex_unlock
[call site]
02493
hts_log
[function]
[call site]
02494
hts_md5_init
[function]
[call site]
02495
hts_md5_update
[function]
[call site]
02496
hts_md5_final
[function]
[call site]
02497
hts_md5_destroy
[function]
[call site]
02498
cram_stats_encoding
[function]
[call site]
02499
cram_encoder_init
[function]
[call site]
02500
cram_stats_encoding
[function]
[call site]
02501
cram_encoder_init
[function]
[call site]
02502
cram_stats_encoding
[function]
[call site]
02503
cram_encoder_init
[function]
[call site]
02504
cram_encoder_init
[function]
[call site]
02505
cram_encoder_init
[function]
[call site]
02506
cram_stats_encoding
[function]
[call site]
02507
cram_encoder_init
[function]
[call site]
02508
cram_stats_encoding
[function]
[call site]
02509
cram_encoder_init
[function]
[call site]
02510
cram_stats_encoding
[function]
[call site]
02511
cram_encoder_init
[function]
[call site]
02512
cram_stats_encoding
[function]
[call site]
02513
cram_encoder_init
[function]
[call site]
02514
cram_stats_encoding
[function]
[call site]
02515
cram_encoder_init
[function]
[call site]
02516
cram_stats_encoding
[function]
[call site]
02517
cram_encoder_init
[function]
[call site]
02518
cram_stats_encoding
[function]
[call site]
02519
cram_encoder_init
[function]
[call site]
02520
cram_stats_encoding
[function]
[call site]
02521
cram_encoder_init
[function]
[call site]
02522
cram_stats_encoding
[function]
[call site]
02523
cram_encoder_init
[function]
[call site]
02524
cram_stats_encoding
[function]
[call site]
02525
cram_encoder_init
[function]
[call site]
02526
cram_stats_encoding
[function]
[call site]
02527
cram_encoder_init
[function]
[call site]
02528
cram_stats_encoding
[function]
[call site]
02529
cram_encoder_init
[function]
[call site]
02530
cram_stats_encoding
[function]
[call site]
02531
cram_encoder_init
[function]
[call site]
02532
cram_encoder_init
[function]
[call site]
02533
cram_stats_encoding
[function]
[call site]
02534
cram_encoder_init
[function]
[call site]
02535
cram_stats_encoding
[function]
[call site]
02536
cram_encoder_init
[function]
[call site]
02537
cram_stats_encoding
[function]
[call site]
02538
cram_encoder_init
[function]
[call site]
02539
cram_stats_encoding
[function]
[call site]
02540
cram_encoder_init
[function]
[call site]
02541
cram_stats_encoding
[function]
[call site]
02542
cram_encoder_init
[function]
[call site]
02543
cram_stats_encoding
[function]
[call site]
02544
cram_encoder_init
[function]
[call site]
02545
cram_stats_encoding
[function]
[call site]
02546
cram_encoder_init
[function]
[call site]
02547
cram_stats_encoding
[function]
[call site]
02548
cram_encoder_init
[function]
[call site]
02549
cram_encoder_init
[function]
[call site]
02550
cram_encoder_init
[function]
[call site]
02551
cram_encoder_init
[function]
[call site]
02552
cram_encoder_init
[function]
[call site]
02553
hts_log
[function]
[call site]
02554
cram_encode_slice
[function]
[call site]
02555
hts_prod_sat2
[function]
[call site]
02556
hts_calloc_ps
[function]
[call site]
02557
hts_add_sat2
[function]
[call site]
02558
hts_calloc
[function]
[call site]
02559
hts_malloc_p
[function]
[call site]
02560
cram_new_block
[function]
[call site]
02561
cram_new_block
[function]
[call site]
02562
cram_new_block
[function]
[call site]
02563
block_append
[function]
[call site]
02564
cram_allocate_block
[function]
[call site]
02565
cram_new_block
[function]
[call site]
02566
cram_new_block
[function]
[call site]
02567
cram_allocate_block
[function]
[call site]
02568
cram_allocate_block
[function]
[call site]
02569
cram_allocate_block
[function]
[call site]
02570
cram_allocate_block
[function]
[call site]
02571
cram_allocate_block
[function]
[call site]
02572
cram_new_block
[function]
[call site]
02573
cram_allocate_block
[function]
[call site]
02574
cram_new_block
[function]
[call site]
02575
cram_encode_slice_read
[function]
[call site]
02576
hts_log
[function]
[call site]
02577
cram_free_block
[function]
[call site]
02578
cram_free_block
[function]
[call site]
02579
cram_free_block
[function]
[call site]
02580
cram_free_block
[function]
[call site]
02581
cram_compress_slice
[function]
[call site]
02582
cram_compress_block2
[function]
[call site]
02583
cram_compress_block3
[function]
[call site]
02584
pthread_mutex_lock
[call site]
02585
pthread_mutex_unlock
[call site]
02586
cram_compress_by_method
[function]
[call site]
02587
zlib_mem_deflate
[function]
[call site]
02588
deflateInit2_
[call site]
02589
hts_log
[function]
[call site]
02590
hts_log
[function]
[call site]
02591
deflate
[call site]
02592
hts_log
[function]
[call site]
02593
deflate
[call site]
02594
hts_log
[function]
[call site]
02595
deflateEnd
[call site]
02596
hts_log
[function]
[call site]
02597
BZ2_bzBuffToBuffCompress
[call site]
02598
fqz_compress
[function]
[call site]
02599
compress_block_fqz2f
[function]
[call site]
02600
fqz_pick_parameters
[function]
[call site]
02601
calloc
[call site]
02602
fqz_qual_stats
[function]
[call site]
02603
calloc
[call site]
02604
memcmp
[call site]
02605
fast_log
[function]
[call site]
02606
fast_log
[function]
[call site]
02607
fast_log
[function]
[call site]
02608
fast_log
[function]
[call site]
02609
fast_log
[function]
[call site]
02610
fast_log
[function]
[call site]
02611
fast_log
[function]
[call site]
02612
log
[call site]
02613
log
[call site]
02614
log
[call site]
02615
log
[call site]
02616
log
[call site]
02617
log
[call site]
02618
log
[call site]
02619
log
[call site]
02620
log
[call site]
02621
var_put_u32
[function]
[call site]
02622
var_put_u32_safe
[function]
[call site]
02623
fqz_store_parameters
[function]
[call site]
02624
store_array
[function]
[call site]
02625
fqz_store_parameters1
[function]
[call site]
02626
store_array
[function]
[call site]
02627
store_array
[function]
[call site]
02628
store_array
[function]
[call site]
02629
fqz_create_models
[function]
[call site]
02630
RC_SetOutput
[function]
[call site]
02631
RC_SetOutputEnd
[function]
[call site]
02632
RC_StartEncode
[function]
[call site]
02633
compress_new_read
[function]
[call site]
02634
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02635
RC_Encode
[function]
[call site]
02636
RC_ShiftLowCheck
[function]
[call site]
02637
SIMPLE_MODEL256_normalize
[function]
[call site]
02638
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02639
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02640
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02641
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02642
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02643
SIMPLE_MODEL2_normalize
[function]
[call site]
02644
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02645
memcmp
[call site]
02646
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02647
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02648
mm_prefetch
[function]
[call site]
02649
fqz_update_ctx
[function]
[call site]
02650
mm_prefetch
[function]
[call site]
02651
fqz_update_ctx
[function]
[call site]
02652
mm_prefetch
[function]
[call site]
02653
fqz_update_ctx
[function]
[call site]
02654
mm_prefetch
[function]
[call site]
02655
fqz_update_ctx
[function]
[call site]
02656
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02657
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02658
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02659
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02660
mm_prefetch
[function]
[call site]
02661
fqz_update_ctx
[function]
[call site]
02662
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02663
RC_FinishEncode
[function]
[call site]
02664
RC_ShiftLowCheck
[function]
[call site]
02665
RC_OutSize
[function]
[call site]
02666
fqz_destroy_models
[function]
[call site]
02667
fqz_free_parameters
[function]
[call site]
02668
lzma_mem_deflate
[function]
[call site]
02669
lzma_stream_buffer_bound
[call site]
02670
lzma_easy_buffer_encode
[call site]
02671
rans_compress
[function]
[call site]
02672
rans_compress_O1
[function]
[call site]
02673
rans_compress_O0
[function]
[call site]
02674
hist8
[function]
[call site]
02675
htscodecs_tls_calloc
[function]
[call site]
02676
htscodecs_tls_free
[function]
[call site]
02677
__assert_fail
[call site]
02678
RansEncSymbolInit
[function]
[call site]
02679
__assert_fail
[call site]
02680
__assert_fail
[call site]
02681
RansEncInit
[function]
[call site]
02682
RansEncInit
[function]
[call site]
02683
RansEncInit
[function]
[call site]
02684
RansEncInit
[function]
[call site]
02685
RansEncPutSymbol
[function]
[call site]
02686
RansEncPutSymbol
[function]
[call site]
02687
RansEncPutSymbol
[function]
[call site]
02688
RansEncPutSymbol
[function]
[call site]
02689
RansEncPutSymbol
[function]
[call site]
02690
RansEncPutSymbol
[function]
[call site]
02691
RansEncPutSymbol
[function]
[call site]
02692
RansEncFlush
[function]
[call site]
02693
RansEncFlush
[function]
[call site]
02694
RansEncFlush
[function]
[call site]
02695
RansEncFlush
[function]
[call site]
02696
htscodecs_tls_alloc
[function]
[call site]
02697
hist1_4
[function]
[call site]
02698
htscodecs_tls_calloc
[function]
[call site]
02699
htscodecs_tls_free
[function]
[call site]
02700
RansEncSymbolInit
[function]
[call site]
02701
__assert_fail
[call site]
02702
RansEncInit
[function]
[call site]
02703
RansEncInit
[function]
[call site]
02704
RansEncInit
[function]
[call site]
02705
RansEncInit
[function]
[call site]
02706
RansEncPutSymbol
[function]
[call site]
02707
RansEncPutSymbol4
[function]
[call site]
02708
__assert_fail
[call site]
02709
__assert_fail
[call site]
02710
__assert_fail
[call site]
02711
__assert_fail
[call site]
02712
RansEncPutSymbol
[function]
[call site]
02713
RansEncPutSymbol
[function]
[call site]
02714
RansEncPutSymbol
[function]
[call site]
02715
RansEncPutSymbol
[function]
[call site]
02716
RansEncFlush
[function]
[call site]
02717
RansEncFlush
[function]
[call site]
02718
RansEncFlush
[function]
[call site]
02719
RansEncFlush
[function]
[call site]
02720
htscodecs_tls_free
[function]
[call site]
02721
rans_compress_O0
[function]
[call site]
02722
rans_compress_4x16
[function]
[call site]
02723
rans_compress_to_4x16
[function]
[call site]
02724
rans_compress_bound_4x16
[function]
[call site]
02725
var_put_u32
[function]
[call site]
02726
rans_compress_to_4x16
[function]
[call site]
02727
realloc
[call site]
02728
var_put_u32
[function]
[call site]
02729
var_put_u32
[function]
[call site]
02730
var_put_u32
[function]
[call site]
02731
hts_pack
[function]
[call site]
02732
var_put_u32
[function]
[call site]
02733
hts_rle_encode
[function]
[call site]
02734
rle_find_syms
[function]
[call site]
02735
var_put_u32
[function]
[call site]
02736
var_put_u32
[function]
[call site]
02737
var_put_u32
[function]
[call site]
02738
rans_enc_func
[function]
[call site]
02739
pthread_once
[call site]
02740
htscodecs_tls_cpu_init
[function]
[call site]
02741
strerror
[call site]
02742
fprintf
[call site]
02743
fprintf
[call site]
02744
var_put_u32
[function]
[call site]
02745
var_put_u32
[function]
[call site]
02746
var_put_u32
[function]
[call site]
02747
rans_enc_func
[function]
[call site]
02748
arith_compress_to
[function]
[call site]
02749
arith_compress_bound
[function]
[call site]
02750
var_put_u32
[function]
[call site]
02751
var_put_u32
[function]
[call site]
02752
arith_compress_to
[function]
[call site]
02753
arith_compress_to
[function]
[call site]
02754
var_put_u32
[function]
[call site]
02755
var_put_u32
[function]
[call site]
02756
hts_pack
[function]
[call site]
02757
var_put_u32
[function]
[call site]
02758
BZ2_bzBuffToBuffCompress
[call site]
02759
arith_compress_O0_RLE
[function]
[call site]
02760
arith_compress_bound
[function]
[call site]
02761
SIMPLE_MODEL256_init
[function]
[call site]
02762
htscodecs_tls_alloc
[function]
[call site]
02763
SIMPLE_MODEL258_init
[function]
[call site]
02764
RC_SetOutput
[function]
[call site]
02765
RC_SetOutputEnd
[function]
[call site]
02766
RC_StartEncode
[function]
[call site]
02767
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02768
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02769
SIMPLE_MODEL258_normalize
[function]
[call site]
02770
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02771
RC_FinishEncode
[function]
[call site]
02772
htscodecs_tls_free
[function]
[call site]
02773
RC_OutSize
[function]
[call site]
02774
htscodecs_tls_free
[function]
[call site]
02775
arith_compress_O1_RLE
[function]
[call site]
02776
arith_compress_bound
[function]
[call site]
02777
htscodecs_tls_alloc
[function]
[call site]
02778
SIMPLE_MODEL256_init
[function]
[call site]
02779
htscodecs_tls_alloc
[function]
[call site]
02780
htscodecs_tls_free
[function]
[call site]
02781
SIMPLE_MODEL258_init
[function]
[call site]
02782
RC_SetOutput
[function]
[call site]
02783
RC_SetOutputEnd
[function]
[call site]
02784
RC_StartEncode
[function]
[call site]
02785
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02786
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02787
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02788
RC_FinishEncode
[function]
[call site]
02789
htscodecs_tls_free
[function]
[call site]
02790
htscodecs_tls_free
[function]
[call site]
02791
RC_OutSize
[function]
[call site]
02792
htscodecs_tls_free
[function]
[call site]
02793
htscodecs_tls_free
[function]
[call site]
02794
arith_compress_O1
[function]
[call site]
02795
arith_compress_bound
[function]
[call site]
02796
htscodecs_tls_alloc
[function]
[call site]
02797
SIMPLE_MODEL256_init
[function]
[call site]
02798
RC_SetOutput
[function]
[call site]
02799
RC_SetOutputEnd
[function]
[call site]
02800
RC_StartEncode
[function]
[call site]
02801
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02802
RC_FinishEncode
[function]
[call site]
02803
htscodecs_tls_free
[function]
[call site]
02804
RC_OutSize
[function]
[call site]
02805
htscodecs_tls_free
[function]
[call site]
02806
arith_compress_O0
[function]
[call site]
02807
arith_compress_bound
[function]
[call site]
02808
SIMPLE_MODEL256_init
[function]
[call site]
02809
RC_SetOutput
[function]
[call site]
02810
RC_SetOutputEnd
[function]
[call site]
02811
RC_StartEncode
[function]
[call site]
02812
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02813
RC_FinishEncode
[function]
[call site]
02814
RC_OutSize
[function]
[call site]
02815
tok3_encode_names
[function]
[call site]
02816
create_context
[function]
[call site]
02817
build_trie
[function]
[call site]
02818
calloc
[call site]
02819
pool_create
[function]
[call site]
02820
pool_alloc
[function]
[call site]
02821
new_pool
[function]
[call site]
02822
realloc
[call site]
02823
free_context
[function]
[call site]
02824
free_context
[function]
[call site]
02825
encode_name
[function]
[call site]
02826
search_trie
[function]
[call site]
02827
__ctype_b_loc
[call site]
02828
__ctype_b_loc
[call site]
02829
__ctype_b_loc
[call site]
02830
__ctype_b_loc
[call site]
02831
__ctype_b_loc
[call site]
02832
calloc
[call site]
02833
__ctype_b_loc
[call site]
02834
strlen
[call site]
02835
encode_token_dup
[function]
[call site]
02836
encode_token_int
[function]
[call site]
02837
encode_token_type
[function]
[call site]
02838
descriptor_grow
[function]
[call site]
02839
realloc
[call site]
02840
descriptor_grow
[function]
[call site]
02841
encode_token_diff
[function]
[call site]
02842
encode_token_int
[function]
[call site]
02843
encode_token_char
[function]
[call site]
02844
encode_token_type
[function]
[call site]
02845
descriptor_grow
[function]
[call site]
02846
memcmp
[call site]
02847
encode_token_match
[function]
[call site]
02848
encode_token_type
[function]
[call site]
02849
encode_token_alpha
[function]
[call site]
02850
encode_token_type
[function]
[call site]
02851
descriptor_grow
[function]
[call site]
02852
encode_token_alpha
[function]
[call site]
02853
__ctype_b_loc
[call site]
02854
__ctype_b_loc
[call site]
02855
__ctype_b_loc
[call site]
02856
memcmp
[call site]
02857
encode_token_match
[function]
[call site]
02858
encode_token_alpha
[function]
[call site]
02859
encode_token_alpha
[function]
[call site]
02860
__ctype_b_loc
[call site]
02861
encode_token_match
[function]
[call site]
02862
encode_token_int1
[function]
[call site]
02863
encode_token_type
[function]
[call site]
02864
descriptor_grow
[function]
[call site]
02865
encode_token_int1_
[function]
[call site]
02866
descriptor_grow
[function]
[call site]
02867
encode_token_int
[function]
[call site]
02868
encode_token_int1_
[function]
[call site]
02869
encode_token_int
[function]
[call site]
02870
__ctype_b_loc
[call site]
02871
__ctype_b_loc
[call site]
02872
encode_token_match
[function]
[call site]
02873
encode_token_int1
[function]
[call site]
02874
encode_token_int
[function]
[call site]
02875
encode_token_int
[function]
[call site]
02876
encode_token_match
[function]
[call site]
02877
encode_token_char
[function]
[call site]
02878
encode_token_char
[function]
[call site]
02879
encode_token_end
[function]
[call site]
02880
encode_token_type
[function]
[call site]
02881
realloc
[call site]
02882
free_context
[function]
[call site]
02883
arith_compress_bound
[function]
[call site]
02884
free_context
[function]
[call site]
02885
compress
[function]
[call site]
02886
arith_encode
[function]
[call site]
02887
arith_compress_to
[function]
[call site]
02888
var_put_u32
[function]
[call site]
02889
rans_encode
[function]
[call site]
02890
rans_compress_to_4x16
[function]
[call site]
02891
var_put_u32
[function]
[call site]
02892
free_context
[function]
[call site]
02893
memcmp
[call site]
02894
free_context
[function]
[call site]
02895
free_context
[function]
[call site]
02896
pthread_mutex_lock
[call site]
02897
pthread_mutex_unlock
[call site]
02898
pthread_mutex_unlock
[call site]
02899
cram_compress_by_method
[function]
[call site]
02900
cram_block_method2str
[function]
[call site]
02901
hts_log
[function]
[call site]
02902
pthread_mutex_lock
[call site]
02903
pthread_mutex_unlock
[call site]
02904
cram_compress_block3
[function]
[call site]
02905
cram_compress_by_method
[function]
[call site]
02906
hts_log
[function]
[call site]
02907
cram_block_method2str
[function]
[call site]
02908
hts_log
[function]
[call site]
02909
pthread_mutex_lock
[call site]
02910
pthread_mutex_unlock
[call site]
02911
cram_compress_block2
[function]
[call site]
02912
cram_compress_block2
[function]
[call site]
02913
cram_compress_block2
[function]
[call site]
02914
cram_compress_block2
[function]
[call site]
02915
cram_compress_block2
[function]
[call site]
02916
cram_compress_block2
[function]
[call site]
02917
cram_compress_block2
[function]
[call site]
02918
cram_compress_block2
[function]
[call site]
02919
cram_compress_block2
[function]
[call site]
02920
cram_compress_block2
[function]
[call site]
02921
cram_compress_block2
[function]
[call site]
02922
cram_compress_block2
[function]
[call site]
02923
cram_compress_block2
[function]
[call site]
02924
cram_compress_block2
[function]
[call site]
02925
cram_compress_block2
[function]
[call site]
02926
hts_realloc_p
[function]
[call site]
02927
cram_free_block
[function]
[call site]
02928
cram_encode_slice_header
[function]
[call site]
02929
cram_new_block
[function]
[call site]
02930
hts_malloc_pse
[function]
[call site]
02931
hts_add_sat2
[function]
[call site]
02932
hts_prod_sat2
[function]
[call site]
02933
hts_add_sat2
[function]
[call site]
02934
hts_malloc
[function]
[call site]
02935
cram_free_block
[function]
[call site]
02936
hts_log
[function]
[call site]
02937
cram_free_block
[function]
[call site]
02938
cram_encode_compression_header
[function]
[call site]
02939
cram_new_block
[function]
[call site]
02940
cram_new_block
[function]
[call site]
02941
itf8_put_blk
[function]
[call site]
02942
itf8_put
[function]
[call site]
02943
block_append
[function]
[call site]
02944
itf8_put_blk
[function]
[call site]
02945
itf8_put_blk
[function]
[call site]
02946
itf8_put_blk
[function]
[call site]
02947
itf8_put_blk
[function]
[call site]
02948
itf8_put_blk
[function]
[call site]
02949
kh_destroy_map
[function]
[call site]
02950
kh_init_map
[function]
[call site]
02951
calloc
[call site]
02952
kh_put_map
[function]
[call site]
02953
kh_resize_map
[function]
[call site]
02954
realloc
[call site]
02955
__ac_FNV1a_hash_string
[function]
[call site]
02956
strcmp
[call site]
02957
kh_put_map
[function]
[call site]
02958
kh_put_map
[function]
[call site]
02959
kh_put_map
[function]
[call site]
02960
kh_put_map
[function]
[call site]
02961
kh_put_map
[function]
[call site]
02962
kh_put_map
[function]
[call site]
02963
kh_put_map
[function]
[call site]
02964
kh_put_map
[function]
[call site]
02965
block_append
[function]
[call site]
02966
block_append_char
[function]
[call site]
02967
sub_idx
[function]
[call site]
02968
sub_idx
[function]
[call site]
02969
sub_idx
[function]
[call site]
02970
sub_idx
[function]
[call site]
02971
sub_idx
[function]
[call site]
02972
sub_idx
[function]
[call site]
02973
sub_idx
[function]
[call site]
02974
sub_idx
[function]
[call site]
02975
sub_idx
[function]
[call site]
02976
sub_idx
[function]
[call site]
02977
sub_idx
[function]
[call site]
02978
sub_idx
[function]
[call site]
02979
sub_idx
[function]
[call site]
02980
sub_idx
[function]
[call site]
02981
sub_idx
[function]
[call site]
02982
sub_idx
[function]
[call site]
02983
sub_idx
[function]
[call site]
02984
sub_idx
[function]
[call site]
02985
sub_idx
[function]
[call site]
02986
sub_idx
[function]
[call site]
02987
block_append
[function]
[call site]
02988
block_append
[function]
[call site]
02989
hts_log
[function]
[call site]
02990
block_append
[function]
[call site]
02991
block_append
[function]
[call site]
02992
block_append
[function]
[call site]
02993
hts_log
[function]
[call site]
02994
cram_free_block
[function]
[call site]
02995
hts_malloc_p
[function]
[call site]
02996
cram_ref_decr
[function]
[call site]
02997
cram_ref_decr
[function]
[call site]
02998
cram_flush_container2
[function]
[call site]
02999
htell
[function]
[call site]
03000
cram_write_container
[function]
[call site]
03001
itf8_put
[function]
[call site]
03002
crc32
[call site]
03003
hwrite
[function]
[call site]
03004
htell
[function]
[call site]
03005
cram_write_block
[function]
[call site]
03006
__assert_fail
[call site]
03007
hputc
[function]
[call site]
03008
hputc2
[function]
[call site]
03009
flush_buffer
[function]
[call site]
03010
hputc
[function]
[call site]
03011
hwrite
[function]
[call site]
03012
hwrite
[function]
[call site]
03013
hwrite
[function]
[call site]
03014
__assert_fail
[call site]
03015
crc32
[call site]
03016
crc32
[call site]
03017
crc32
[call site]
03018
int32_encode
[function]
[call site]
03019
hwrite
[function]
[call site]
03020
htell
[function]
[call site]
03021
cram_write_block
[function]
[call site]
03022
cram_write_block
[function]
[call site]
03023
htell
[function]
[call site]
03024
cram_index_slice
[function]
[call site]
03025
hts_log
[function]
[call site]
03026
cram_index_build_multiref
[function]
[call site]
03027
cram_decode_slice
[function]
[call site]
03028
cram_dependent_data_series
[function]
[call site]
03029
cram_uncompress_block
[function]
[call site]
03030
cram_uncompress_block
[function]
[call site]
03031
hts_calloc_ps
[function]
[call site]
03032
cram_codec_to_id
[function]
[call site]
03033
cram_codec_to_id
[function]
[call site]
03034
cram_codec_to_id
[function]
[call site]
03035
hts_log
[function]
[call site]
03036
cram_uncompress_block
[function]
[call site]
03037
cram_codec_to_id
[function]
[call site]
03038
cram_uncompress_block
[function]
[call site]
03039
cram_codec_to_id
[function]
[call site]
03040
cram_codec_to_id
[function]
[call site]
03041
block_resize_exact
[function]
[call site]
03042
block_resize_exact
[function]
[call site]
03043
block_resize_exact
[function]
[call site]
03044
strcmp
[call site]
03045
hts_malloc_p
[function]
[call site]
03046
hts_log
[function]
[call site]
03047
cram_get_block_by_id
[function]
[call site]
03048
cram_uncompress_block
[function]
[call site]
03049
hts_log
[function]
[call site]
03050
cram_get_ref
[function]
[call site]
03051
hts_log
[function]
[call site]
03052
pthread_mutex_lock
[call site]
03053
pthread_mutex_lock
[call site]
03054
pthread_mutex_unlock
[call site]
03055
pthread_mutex_unlock
[call site]
03056
hts_log
[function]
[call site]
03057
memcmp
[call site]
03058
hts_log
[function]
[call site]
03059
hts_log
[function]
[call site]
03060
hts_md5_init
[function]
[call site]
03061
hts_md5_update
[function]
[call site]
03062
hts_md5_final
[function]
[call site]
03063
hts_md5_destroy
[function]
[call site]
03064
cram_get_block_by_id
[function]
[call site]
03065
hts_md5_init
[function]
[call site]
03066
hts_md5_update
[function]
[call site]
03067
hts_md5_final
[function]
[call site]
03068
hts_md5_destroy
[function]
[call site]
03069
memcmp
[call site]
03070
sam_hdr_tid2name
[function]
[call site]
03071
hts_log
[function]
[call site]
03072
md5_print
[function]
[call site]
03073
hts_log
[function]
[call site]
03074
md5_print
[function]
[call site]
03075
hts_log
[function]
[call site]
03076
sam_hdr_find_tag_id
[function]
[call site]
03077
sam_hdr_fill_hrecs
[function]
[call site]
03078
sam_hrecs_find_type_id
[function]
[call site]
03079
sam_hrecs_find_key
[function]
[call site]
03080
kputsn
[function]
[call site]
03081
hts_log
[function]
[call site]
03082
hts_log
[function]
[call site]
03083
ks_free
[function]
[call site]
03084
ks_initialize
[function]
[call site]
03085
pthread_mutex_lock
[call site]
03086
pthread_mutex_lock
[call site]
03087
calloc
[call site]
03088
pthread_mutex_unlock
[call site]
03089
pthread_mutex_unlock
[call site]
03090
hts_log
[function]
[call site]
03091
pthread_mutex_lock
[call site]
03092
pthread_mutex_unlock
[call site]
03093
cram_get_ref
[function]
[call site]
03094
pthread_mutex_lock
[call site]
03095
pthread_mutex_unlock
[call site]
03096
pthread_mutex_lock
[call site]
03097
pthread_mutex_unlock
[call site]
03098
cram_ref_decr
[function]
[call site]
03099
pthread_mutex_lock
[call site]
03100
pthread_mutex_lock
[call site]
03101
pthread_mutex_unlock
[call site]
03102
pthread_mutex_unlock
[call site]
03103
hts_log
[function]
[call site]
03104
hts_log
[function]
[call site]
03105
pthread_mutex_lock
[call site]
03106
pthread_mutex_unlock
[call site]
03107
hts_log
[function]
[call site]
03108
cram_decode_tlen
[function]
[call site]
03109
cram_decode_tlen
[function]
[call site]
03110
cram_decode_tlen
[function]
[call site]
03111
cram_decode_aux_1_0
[function]
[call site]
03112
map_find
[function]
[call site]
03113
block_append
[function]
[call site]
03114
cram_decode_aux
[function]
[call site]
03115
strlen
[call site]
03116
sam_hdr_line_name
[function]
[call site]
03117
sam_hdr_fill_hrecs
[function]
[call site]
03118
hts_log
[function]
[call site]
03119
hts_log
[function]
[call site]
03120
hts_log
[function]
[call site]
03121
hts_log
[function]
[call site]
03122
strlen
[call site]
03123
block_append
[function]
[call site]
03124
block_append
[function]
[call site]
03125
block_append_char
[function]
[call site]
03126
block_append
[function]
[call site]
03127
map_find
[function]
[call site]
03128
block_append
[function]
[call site]
03129
aux_ele_size
[function]
[call site]
03130
hts_log
[function]
[call site]
03131
block_resize
[function]
[call site]
03132
block_resize
[function]
[call site]
03133
hts_log
[function]
[call site]
03134
cram_decode_seq
[function]
[call site]
03135
block_append
[function]
[call site]
03136
hts_realloc_p
[function]
[call site]
03137
hts_log
[function]
[call site]
03138
hts_log
[function]
[call site]
03139
hts_log
[function]
[call site]
03140
memchr
[call site]
03141
add_md_char
[function]
[call site]
03142
block_append_uint
[function]
[call site]
03143
block_grow
[function]
[call site]
03144
append_uint32
[function]
[call site]
03145
block_append_char
[function]
[call site]
03146
block_append_uint
[function]
[call site]
03147
add_md_char
[function]
[call site]
03148
block_append_uint
[function]
[call site]
03149
block_append_char
[function]
[call site]
03150
block_append
[function]
[call site]
03151
block_append_char
[function]
[call site]
03152
block_append
[function]
[call site]
03153
block_append_uint
[function]
[call site]
03154
block_append_uint
[function]
[call site]
03155
block_append_uint
[function]
[call site]
03156
block_append_char
[function]
[call site]
03157
block_append_uint
[function]
[call site]
03158
block_append_char
[function]
[call site]
03159
hts_log
[function]
[call site]
03160
hts_log
[function]
[call site]
03161
memchr
[call site]
03162
add_md_char
[function]
[call site]
03163
hts_realloc_p
[function]
[call site]
03164
block_append_uint
[function]
[call site]
03165
hts_realloc_p
[function]
[call site]
03166
block_append_char
[function]
[call site]
03167
block_append
[function]
[call site]
03168
pthread_mutex_lock
[call site]
03169
cram_ref_decr
[function]
[call site]
03170
cram_ref_decr
[function]
[call site]
03171
pthread_mutex_unlock
[call site]
03172
cram_decode_slice_xref
[function]
[call site]
03173
hts_log
[function]
[call site]
03174
cram_free_block
[function]
[call site]
03175
block_resize_exact
[function]
[call site]
03176
block_resize_exact
[function]
[call site]
03177
block_resize_exact
[function]
[call site]
03178
block_resize_exact
[function]
[call site]
03179
pthread_mutex_lock
[call site]
03180
cram_ref_decr
[function]
[call site]
03181
pthread_mutex_unlock
[call site]
03182
hts_log
[function]
[call site]
03183
snprintf
[call site]
03184
strlen
[call site]
03185
bgzf_write
[function]
[call site]
03186
hwrite
[function]
[call site]
03187
__assert_fail
[call site]
03188
lazy_flush
[function]
[call site]
03189
mt_queue
[function]
[call site]
03190
bgzf_flush
[function]
[call site]
03191
snprintf
[call site]
03192
strlen
[call site]
03193
bgzf_write
[function]
[call site]
03194
snprintf
[call site]
03195
strlen
[call site]
03196
bgzf_write
[function]
[call site]
03197
__errno_location
[call site]
03198
hts_tpool_dispatch2
[function]
[call site]
03199
hts_tpool_dispatch3
[function]
[call site]
03200
cram_flush_thread
[function]
[call site]
03201
cram_encode_container
[function]
[call site]
03202
hts_log
[function]
[call site]
03203
__errno_location
[call site]
03204
cram_flush_result
[function]
[call site]
03205
hts_tpool_next_result
[function]
[call site]
03206
pthread_mutex_lock
[call site]
03207
hts_tpool_next_result_locked
[function]
[call site]
03208
pthread_mutex_unlock
[call site]
03209
hts_tpool_result_data
[function]
[call site]
03210
hts_tpool_delete_result
[function]
[call site]
03211
cram_flush_container2
[function]
[call site]
03212
cram_free_slice
[function]
[call site]
03213
cram_free_slice
[function]
[call site]
03214
cram_free_container
[function]
[call site]
03215
hts_tpool_delete_result
[function]
[call site]
03216
cram_free_container
[function]
[call site]
03217
hts_usleep
[function]
[call site]
03218
cram_drain_rqueue
[function]
[call site]
03219
hts_tpool_process_flush
[function]
[call site]
03220
cram_flush_result
[function]
[call site]
03221
hts_tpool_process_destroy
[function]
[call site]
03222
pthread_mutex_destroy
[call site]
03223
pthread_mutex_destroy
[call site]
03224
pthread_mutex_destroy
[call site]
03225
pthread_mutex_destroy
[call site]
03226
cram_write_eof_block
[function]
[call site]
03227
cram_encode_compression_header
[function]
[call site]
03228
cram_write_container
[function]
[call site]
03229
cram_write_block
[function]
[call site]
03230
cram_close
[function]
[call site]
03231
free_bam_list
[function]
[call site]
03232
hclose
[function]
[call site]
03233
cram_free_file_def
[function]
[call site]
03234
sam_hdr_destroy
[function]
[call site]
03235
cram_free_container
[function]
[call site]
03236
cram_free_container
[function]
[call site]
03237
refs_free
[function]
[call site]
03238
kh_destroy_m_metrics
[function]
[call site]
03239
cram_index_free
[function]
[call site]
03240
cram_index_free_recurse
[function]
[call site]
03241
cram_index_free_recurse
[function]
[call site]
03242
hts_tpool_destroy
[function]
[call site]
03243
bgzf_close
[function]
[call site]
03244
cram_free_block
[function]
[call site]
03245
kh_destroy_map
[function]
[call site]
03246
cram_free_block
[function]
[call site]
03247
sam_state_destroy
[function]
[call site]
03248
fastq_state_destroy
[function]
[call site]
03249
kh_destroy_tag
[function]
[call site]
03250
ks_free
[function]
[call site]
03251
ks_initialize
[function]
[call site]
03252
ks_free
[function]
[call site]
03253
ks_free
[function]
[call site]
03254
regfree
[call site]
03255
bgzf_close
[function]
[call site]
03256
hclose
[function]
[call site]
03257
hts_idx_close_otf_fp
[function]
[call site]
03258
need_idx_ugly_delay_hack
[function]
[call site]
03259
idx_write_uint64
[function]
[call site]
03260
ed_is_big
[function]
[call site]
03261
ed_swap_8
[function]
[call site]
03262
bgzf_write
[function]
[call site]
03263
bgzf_close
[function]
[call site]
03264
__errno_location
[call site]
03265
sam_hdr_destroy
[function]
[call site]
03266
hts_idx_destroy
[function]
[call site]
03267
cram_index_free
[function]
[call site]
03268
kh_destroy_bin
[function]
[call site]
03269
hts_filter_free
[function]
[call site]
03270
__errno_location
[call site]
03271
view_sam
[function]
[call site]
03272
abort
[call site]
03273
hopen
[function]
[call site]
03274
hts_hopen
[function]
[call site]
03275
hclose
[function]
[call site]
03276
abort
[call site]
03277
hts_open
[function]
[call site]
03278
hts_open_format
[function]
[call site]
03279
strncpy
[call site]
03280
strchr
[call site]
03281
strchr
[call site]
03282
strchr
[call site]
03283
strstr
[call site]
03284
strdup
[call site]
03285
hopen
[function]
[call site]
03286
hts_hopen
[function]
[call site]
03287
hts_opt_apply
[function]
[call site]
03288
__errno_location
[call site]
03289
__errno_location
[call site]
03290
__errno_location
[call site]
03291
__errno_location
[call site]
03292
strerror
[call site]
03293
hts_log
[function]
[call site]
03294
hclose_abruptly
[function]
[call site]
03295
abort
[call site]
03296
sam_hdr_read
[function]
[call site]
03297
__errno_location
[call site]
03298
bam_hdr_read
[function]
[call site]
03299
bgzf_check_EOF
[function]
[call site]
03300
pthread_mutex_lock
[call site]
03301
pthread_cond_signal
[call site]
03302
hts_tpool_wake_dispatch
[function]
[call site]
03303
pthread_mutex_unlock
[call site]
03304
pthread_cond_wait
[call site]
03305
pthread_cond_signal
[call site]
03306
abort
[call site]
03307
pthread_mutex_unlock
[call site]
03308
bgzf_check_EOF_common
[function]
[call site]
03309
htell
[function]
[call site]
03310
hseek
[function]
[call site]
03311
__errno_location
[call site]
03312
hclearerr
[function]
[call site]
03313
__errno_location
[call site]
03314
hclearerr
[function]
[call site]
03315
hread
[function]
[call site]
03316
hseek
[function]
[call site]
03317
memcmp
[call site]
03318
perror
[call site]
03319
hts_log
[function]
[call site]
03320
bgzf_read
[function]
[call site]
03321
memcmp
[call site]
03322
hts_log
[function]
[call site]
03323
sam_hdr_init
[function]
[call site]
03324
bgzf_read
[function]
[call site]
03325
le_to_u32
[function]
[call site]
03326
bgzf_read
[function]
[call site]
03327
bgzf_read
[function]
[call site]
03328
ed_swap_4p
[function]
[call site]
03329
ed_swap_4
[function]
[call site]
03330
calloc
[call site]
03331
calloc
[call site]
03332
bgzf_read
[function]
[call site]
03333
ed_swap_4p
[function]
[call site]
03334
bgzf_read
[function]
[call site]
03335
realloc
[call site]
03336
bgzf_read
[function]
[call site]
03337
ed_swap_4p
[function]
[call site]
03338
hts_log
[function]
[call site]
03339
hts_log
[function]
[call site]
03340
hts_log
[function]
[call site]
03341
sam_hdr_destroy
[function]
[call site]
03342
sam_hdr_sanitise
[function]
[call site]
03343
hts_log
[function]
[call site]
03344
sam_hdr_destroy
[function]
[call site]
03345
hts_log
[function]
[call site]
03346
hts_log
[function]
[call site]
03347
sam_hdr_destroy
[function]
[call site]
03348
realloc
[call site]
03349
sam_hdr_destroy
[function]
[call site]
03350
sam_hdr_dup
[function]
[call site]
03351
sam_hdr_init
[function]
[call site]
03352
calloc
[call site]
03353
calloc
[call site]
03354
strdup
[call site]
03355
sam_hdr_dup_sdict
[function]
[call site]
03356
kh_init_s2i
[function]
[call site]
03357
kh_get_s2i
[function]
[call site]
03358
kh_put_s2i
[function]
[call site]
03359
kh_destroy_s2i
[function]
[call site]
03360
sam_hrecs_rebuild_text
[function]
[call site]
03361
kputsn
[function]
[call site]
03362
sam_hrecs_rebuild_lines
[function]
[call site]
03363
kputsn
[function]
[call site]
03364
build_header_line
[function]
[call site]
03365
kputc_
[function]
[call site]
03366
kputsn
[function]
[call site]
03367
kputc_
[function]
[call site]
03368
kputsn
[function]
[call site]
03369
kputc
[function]
[call site]
03370
ks_release
[function]
[call site]
03371
ks_release
[function]
[call site]
03372
sam_hdr_update_target_arrays
[function]
[call site]
03373
hts_malloc_ps
[function]
[call site]
03374
sam_hdr_destroy
[function]
[call site]
03375
sam_hdr_sanitise
[function]
[call site]
03376
sam_hdr_create
[function]
[call site]
03377
sam_hdr_init
[function]
[call site]
03378
sam_hdr_build_from_sam_file
[function]
[call site]
03379
sam_hrecs_new
[function]
[call site]
03380
hts_getline
[function]
[call site]
03381
hts_log
[function]
[call site]
03382
abort
[call site]
03383
kgetline2
[function]
[call site]
03384
ks_resize
[function]
[call site]
03385
hgetln_wrapper
[function]
[call site]
03386
hgetln
[function]
[call site]
03387
herrno
[function]
[call site]
03388
__errno_location
[call site]
03389
bgzf_getline
[function]
[call site]
03390
bgzf_read_block
[function]
[call site]
03391
memchr
[call site]
03392
ks_expand
[function]
[call site]
03393
bgzf_htell
[function]
[call site]
03394
abort
[call site]
03395
isalpha_c
[function]
[call site]
03396
sam_hrecs_error
[function]
[call site]
03397
strncmp
[call site]
03398
kputc
[function]
[call site]
03399
valid_sam_header_type
[function]
[call site]
03400
hts_log
[function]
[call site]
03401
warn_if_known_stderr
[function]
[call site]
03402
sam_hrecs_parse_single_line
[function]
[call site]
03403
TYPEKEY
[function]
[call site]
03404
kputsn
[function]
[call site]
03405
kputc
[function]
[call site]
03406
bgzf_peek
[function]
[call site]
03407
bgzf_read_block
[function]
[call site]
03408
hts_log
[function]
[call site]
03409
hpeek
[function]
[call site]
03410
strstr
[call site]
03411
hopen
[function]
[call site]
03412
khgetline
[function]
[call site]
03413
kgetline
[function]
[call site]
03414
ks_resize
[function]
[call site]
03415
strlen
[call site]
03416
hgets_wrapper
[function]
[call site]
03417
hgets
[function]
[call site]
03418
strchr
[call site]
03419
strtoll
[call site]
03420
kputs
[function]
[call site]
03421
kputsn
[function]
[call site]
03422
kputs
[function]
[call site]
03423
kputll
[function]
[call site]
03424
kputc
[function]
[call site]
03425
sam_hrecs_parse_single_line
[function]
[call site]
03426
ks_free
[function]
[call site]
03427
hclose
[function]
[call site]
03428
hts_log
[function]
[call site]
03429
kh_grow_to_fit_m_s2i
[function]
[call site]
03430
hts_realloc_p
[function]
[call site]
03431
sam_hrecs_update_hashes
[function]
[call site]
03432
kputsn
[function]
[call site]
03433
ks_release
[function]
[call site]
03434
sam_hdr_update_target_arrays
[function]
[call site]
03435
ks_free
[function]
[call site]
03436
sam_hdr_destroy
[function]
[call site]
03437
sam_hdr_destroy
[function]
[call site]
03438
sam_hdr_sanitise
[function]
[call site]
03439
sam_hdr_init
[function]
[call site]
03440
__errno_location
[call site]
03441
__errno_location
[call site]
03442
sam_hdr_incr_ref
[function]
[call site]
03443
hts_close_or_abort
[function]
[call site]
03444
hts_close
[function]
[call site]
03445
abort
[call site]
03446
hts_close
[function]
[call site]
03447
hts_close
[function]
[call site]
03448
sam_hdr_count_lines
[function]
[call site]
03449
sam_hdr_fill_hrecs
[function]
[call site]
03450
sam_hrecs_find_type_id
[function]
[call site]
03451
sam_hdr_write
[function]
[call site]
03452
__errno_location
[call site]
03453
bam_hdr_write
[function]
[call site]
03454
sam_hrecs_rebuild_text
[function]
[call site]
03455
hts_log
[function]
[call site]
03456
hts_log
[function]
[call site]
03457
hts_log
[function]
[call site]
03458
hts_log
[function]
[call site]
03459
hts_log
[function]
[call site]
03460
hts_log
[function]
[call site]
03461
bgzf_write
[function]
[call site]
03462
ed_swap_4
[function]
[call site]
03463
bgzf_write
[function]
[call site]
03464
bgzf_write
[function]
[call site]
03465
ed_swap_4
[function]
[call site]
03466
bgzf_write
[function]
[call site]
03467
bgzf_write
[function]
[call site]
03468
bgzf_write
[function]
[call site]
03469
bgzf_write
[function]
[call site]
03470
strlen
[call site]
03471
ed_swap_4
[function]
[call site]
03472
bgzf_write
[function]
[call site]
03473
bgzf_write
[function]
[call site]
03474
bgzf_write
[function]
[call site]
03475
ed_swap_4
[function]
[call site]
03476
bgzf_write
[function]
[call site]
03477
bgzf_write
[function]
[call site]
03478
bgzf_flush
[function]
[call site]
03479
cram_set_header2
[function]
[call site]
03480
sam_hdr_destroy
[function]
[call site]
03481
sam_hdr_dup
[function]
[call site]
03482
refs_from_header
[function]
[call site]
03483
cram_load_reference
[function]
[call site]
03484
cram_write_SAM_hdr
[function]
[call site]
03485
cram_write_file_def
[function]
[call site]
03486
hwrite
[function]
[call site]
03487
sam_hrecs_find_rg
[function]
[call site]
03488
sam_hdr_add_line
[function]
[call site]
03489
sam_hdr_fill_hrecs
[function]
[call site]
03490
sam_hrecs_vadd
[function]
[call site]
03491
rebuild_target_arrays
[function]
[call site]
03492
redact_header_text
[function]
[call site]
03493
refs_from_header
[function]
[call site]
03494
refs2id
[function]
[call site]
03495
sam_hrecs_find_type_id
[function]
[call site]
03496
sam_hrecs_find_key
[function]
[call site]
03497
cram_get_ref
[function]
[call site]
03498
hts_log
[function]
[call site]
03499
hts_log
[function]
[call site]
03500
hts_log
[function]
[call site]
03501
pthread_mutex_lock
[call site]
03502
pthread_mutex_unlock
[call site]
03503
hts_md5_init
[function]
[call site]
03504
hts_md5_update
[function]
[call site]
03505
hts_md5_final
[function]
[call site]
03506
hts_md5_destroy
[function]
[call site]
03507
cram_ref_decr
[function]
[call site]
03508
hts_md5_hex
[function]
[call site]
03509
sam_hdr_update_line
[function]
[call site]
03510
sam_hdr_fill_hrecs
[function]
[call site]
03511
sam_hrecs_find_type_id
[function]
[call site]
03512
check_for_name_update
[function]
[call site]
03513
TYPEKEY
[function]
[call site]
03514
TYPEKEY
[function]
[call site]
03515
TYPEKEY
[function]
[call site]
03516
sam_hrecs_find_key
[function]
[call site]
03517
__assert_fail
[call site]
03518
strcmp
[call site]
03519
strcmp
[call site]
03520
kh_get_m_s2i
[function]
[call site]
03521
hts_log
[function]
[call site]
03522
TYPEKEY
[function]
[call site]
03523
hts_log
[function]
[call site]
03524
sam_hrecs_vupdate
[function]
[call site]
03525
kh_get_m_s2i
[function]
[call site]
03526
sam_hrecs_find_key
[function]
[call site]
03527
__assert_fail
[call site]
03528
__assert_fail
[call site]
03529
__assert_fail
[call site]
03530
kh_del_m_s2i
[function]
[call site]
03531
kh_put_m_s2i
[function]
[call site]
03532
hts_log
[function]
[call site]
03533
TYPEKEY
[function]
[call site]
03534
sam_hrecs_update_hashes
[function]
[call site]
03535
rebuild_target_arrays
[function]
[call site]
03536
redact_header_text
[function]
[call site]
03537
full_path
[function]
[call site]
03538
strlen
[call site]
03539
hisremote
[function]
[call site]
03540
hts_log
[function]
[call site]
03541
strncpy
[call site]
03542
toupper_c
[function]
[call site]
03543
strncpy
[call site]
03544
getcwd
[call site]
03545
strlen
[call site]
03546
strncpy
[call site]
03547
snprintf
[call site]
03548
sam_hdr_update_line
[function]
[call site]
03549
sam_hdr_length
[function]
[call site]
03550
sam_hdr_rebuild
[function]
[call site]
03551
rebuild_target_arrays
[function]
[call site]
03552
hts_log
[function]
[call site]
03553
sam_hdr_link_pg
[function]
[call site]
03554
sam_hdr_fill_hrecs
[function]
[call site]
03555
hts_realloc_p
[function]
[call site]
03556
calloc
[call site]
03557
__assert_fail
[call site]
03558
kh_get_m_s2i
[function]
[call site]
03559
hts_log
[function]
[call site]
03560
hts_log
[function]
[call site]
03561
redact_header_text
[function]
[call site]
03562
hts_log
[function]
[call site]
03563
sam_hrecs_rebuild_text
[function]
[call site]
03564
ks_free
[function]
[call site]
03565
ks_len
[function]
[call site]
03566
ks_release
[function]
[call site]
03567
hts_log
[function]
[call site]
03568
int32_encode
[function]
[call site]
03569
sam_hdr_str
[function]
[call site]
03570
sam_hdr_rebuild
[function]
[call site]
03571
hwrite
[function]
[call site]
03572
cram_new_block
[function]
[call site]
03573
cram_new_container
[function]
[call site]
03574
calloc
[call site]
03575
calloc
[call site]
03576
cram_new_compression_header
[function]
[call site]
03577
calloc
[call site]
03578
cram_new_block
[function]
[call site]
03579
kh_init_m_s2i
[function]
[call site]
03580
cram_free_block
[function]
[call site]
03581
string_pool_create
[function]
[call site]
03582
kh_destroy_m_s2i
[function]
[call site]
03583
cram_free_block
[function]
[call site]
03584
cram_stats_create
[function]
[call site]
03585
calloc
[call site]
03586
kh_init_m_tagmap
[function]
[call site]
03587
calloc
[call site]
03588
cram_free_block
[function]
[call site]
03589
cram_free_container
[function]
[call site]
03590
int32_put_blk
[function]
[call site]
03591
block_append
[function]
[call site]
03592
sam_hdr_str
[function]
[call site]
03593
block_append
[function]
[call site]
03594
cram_compress_block
[function]
[call site]
03595
cram_compress_block2
[function]
[call site]
03596
cram_free_block
[function]
[call site]
03597
cram_free_container
[function]
[call site]
03598
calloc
[call site]
03599
cram_free_block
[function]
[call site]
03600
cram_free_container
[function]
[call site]
03601
block_append
[function]
[call site]
03602
cram_write_container
[function]
[call site]
03603
cram_free_block
[function]
[call site]
03604
cram_free_container
[function]
[call site]
03605
cram_write_block
[function]
[call site]
03606
cram_free_block
[function]
[call site]
03607
cram_free_container
[function]
[call site]
03608
block_resize
[function]
[call site]
03609
cram_write_block
[function]
[call site]
03610
cram_free_block
[function]
[call site]
03611
cram_free_container
[function]
[call site]
03612
cram_free_block
[function]
[call site]
03613
cram_free_container
[function]
[call site]
03614
hflush
[function]
[call site]
03615
sam_hrecs_rebuild_text
[function]
[call site]
03616
strstr
[call site]
03617
bgzf_write
[function]
[call site]
03618
hwrite
[function]
[call site]
03619
kputsn
[function]
[call site]
03620
kputs
[function]
[call site]
03621
kputsn
[function]
[call site]
03622
kputw
[function]
[call site]
03623
kputc
[function]
[call site]
03624
bgzf_write
[function]
[call site]
03625
hwrite
[function]
[call site]
03626
bgzf_flush
[function]
[call site]
03627
hflush
[function]
[call site]
03628
__errno_location
[call site]
03629
sam_hdr_dup
[function]
[call site]
03630
sam_hdr_destroy
[function]
[call site]
03631
bam_init1
[function]
[call site]
03632
calloc
[call site]
03633
sam_read1
[function]
[call site]
03634
sam_read1_bam
[function]
[call site]
03635
bam_read1
[function]
[call site]
03636
bgzf_read_small
[function]
[call site]
03637
bgzf_read
[function]
[call site]
03638
ed_swap_4p
[function]
[call site]
03639
bgzf_read
[function]
[call site]
03640
le_to_u32
[function]
[call site]
03641
le_to_i32
[function]
[call site]
03642
le_to_u32
[function]
[call site]
03643
le_to_u32
[function]
[call site]
03644
le_to_u32
[function]
[call site]
03645
le_to_i32
[function]
[call site]
03646
le_to_i32
[function]
[call site]
03647
realloc_bam_data
[function]
[call site]
03648
sam_realloc_bam_data
[function]
[call site]
03649
__errno_location
[call site]
03650
__errno_location
[call site]
03651
bam_get_mempolicy
[function]
[call site]
03652
realloc
[call site]
03653
bam_get_mempolicy
[function]
[call site]
03654
bam_set_mempolicy
[function]
[call site]
03655
bgzf_read_small
[function]
[call site]
03656
fixup_missing_qname_nul
[function]
[call site]
03657
realloc_bam_data
[function]
[call site]
03658
bgzf_read_small
[function]
[call site]
03659
swap_data
[function]
[call site]
03660
ed_swap_4p
[function]
[call site]
03661
bam_tag2cigar
[function]
[call site]
03662
bam_aux_get
[function]
[call site]
03663
__errno_location
[call site]
03664
__errno_location
[call site]
03665
__errno_location
[call site]
03666
le_to_u32
[function]
[call site]
03667
possibly_expand_bam_data
[function]
[call site]
03668
__errno_location
[call site]
03669
sam_realloc_bam_data
[function]
[call site]
03670
bam_endpos
[function]
[call site]
03671
bam_cigar2rlen
[function]
[call site]
03672
hts_reg2bin
[function]
[call site]
03673
hts_log
[function]
[call site]
03674
bam_cigar2rqlens
[function]
[call site]
03675
hts_reg2bin
[function]
[call site]
03676
hts_log
[function]
[call site]
03677
__errno_location
[call site]
03678
sam_read1_cram
[function]
[call site]
03679
cram_get_bam_seq
[function]
[call site]
03680
cram_get_seq
[function]
[call site]
03681
cram_next_slice
[function]
[call site]
03682
cram_first_slice
[function]
[call site]
03683
cram_free_container
[function]
[call site]
03684
cram_read_container
[function]
[call site]
03685
cram_seek
[function]
[call site]
03686
cram_free_container
[function]
[call site]
03687
cram_read_container
[function]
[call site]
03688
cram_read_block
[function]
[call site]
03689
cram_decode_compression_header
[function]
[call site]
03690
calloc
[call site]
03691
cram_uncompress_block
[function]
[call site]
03692
hts_malloc_p
[function]
[call site]
03693
kh_init_map
[function]
[call site]
03694
cram_free_compression_header
[function]
[call site]
03695
cram_free_compression_header
[function]
[call site]
03696
kh_put_map
[function]
[call site]
03697
cram_free_compression_header
[function]
[call site]
03698
kh_put_map
[function]
[call site]
03699
cram_free_compression_header
[function]
[call site]
03700
kh_put_map
[function]
[call site]
03701
cram_free_compression_header
[function]
[call site]
03702
kh_put_map
[function]
[call site]
03703
cram_free_compression_header
[function]
[call site]
03704
cram_free_compression_header
[function]
[call site]
03705
kh_put_map
[function]
[call site]
03706
cram_free_compression_header
[function]
[call site]
03707
cram_decode_TD
[function]
[call site]
03708
cram_new_block
[function]
[call site]
03709
hts_log
[function]
[call site]
03710
cram_free_block
[function]
[call site]
03711
cram_free_block
[function]
[call site]
03712
cram_free_block
[function]
[call site]
03713
block_append
[function]
[call site]
03714
block_append_char
[function]
[call site]
03715
calloc
[call site]
03716
cram_free_block
[function]
[call site]
03717
cram_free_block
[function]
[call site]
03718
cram_free_compression_header
[function]
[call site]
03719
kh_put_map
[function]
[call site]
03720
cram_free_compression_header
[function]
[call site]
03721
hts_log
[function]
[call site]
03722
cram_free_compression_header
[function]
[call site]
03723
cram_free_compression_header
[function]
[call site]
03724
cram_free_compression_header
[function]
[call site]
03725
hts_log
[function]
[call site]
03726
hts_log
[function]
[call site]
03727
cram_decoder_init
[function]
[call site]
03728
cram_encoding2str
[function]
[call site]
03729
hts_log
[function]
[call site]
03730
cram_free_compression_header
[function]
[call site]
03731
cram_free_compression_header
[function]
[call site]
03732
cram_free_compression_header
[function]
[call site]
03733
cram_free_compression_header
[function]
[call site]
03734
cram_decoder_init
[function]
[call site]
03735
cram_free_compression_header
[function]
[call site]
03736
cram_free_compression_header
[function]
[call site]
03737
sam_hrecs_sort_order
[function]
[call site]
03738
TYPEKEY
[function]
[call site]
03739
kh_get_sam_hrecs_t
[function]
[call site]
03740
strcmp
[call site]
03741
strcmp
[call site]
03742
strcmp
[call site]
03743
strcmp
[call site]
03744
hts_log
[function]
[call site]
03745
pthread_mutex_lock
[call site]
03746
pthread_mutex_unlock
[call site]
03747
cram_free_slice
[function]
[call site]
03748
cram_free_container
[function]
[call site]
03749
cram_read_container
[function]
[call site]
03750
cram_free_container
[function]
[call site]
03751
cram_free_container
[function]
[call site]
03752
cram_free_container
[function]
[call site]
03753
cram_free_container
[function]
[call site]
03754
hseek
[function]
[call site]
03755
cram_read_block
[function]
[call site]
03756
cram_decode_compression_header
[function]
[call site]
03757
sam_hrecs_sort_order
[function]
[call site]
03758
pthread_mutex_lock
[call site]
03759
pthread_mutex_unlock
[call site]
03760
cram_free_container
[function]
[call site]
03761
cram_read_slice
[function]
[call site]
03762
cram_read_block
[function]
[call site]
03763
calloc
[call site]
03764
cram_decode_slice_header
[function]
[call site]
03765
cram_uncompress_block
[function]
[call site]
03766
calloc
[call site]
03767
hts_log
[function]
[call site]
03768
hts_malloc_p
[function]
[call site]
03769
cram_content_type2str
[function]
[call site]
03770
hts_log
[function]
[call site]
03771
hts_log
[function]
[call site]
03772
calloc
[call site]
03773
cram_read_block
[function]
[call site]
03774
calloc
[call site]
03775
hts_malloc_p
[function]
[call site]
03776
cram_new_block
[function]
[call site]
03777
cram_new_block
[function]
[call site]
03778
cram_new_block
[function]
[call site]
03779
cram_new_block
[function]
[call site]
03780
cram_new_block
[function]
[call site]
03781
cram_new_block
[function]
[call site]
03782
cram_free_block
[function]
[call site]
03783
cram_free_slice
[function]
[call site]
03784
cram_free_slice
[function]
[call site]
03785
cram_free_slice
[function]
[call site]
03786
cram_free_slice
[function]
[call site]
03787
cram_decode_slice_mt
[function]
[call site]
03788
cram_decode_slice
[function]
[call site]
03789
hts_tpool_process_sz
[function]
[call site]
03790
pthread_mutex_lock
[call site]
03791
pthread_mutex_unlock
[call site]
03792
__errno_location
[call site]
03793
__errno_location
[call site]
03794
hts_tpool_dispatch2
[function]
[call site]
03795
cram_decode_slice_thread
[function]
[call site]
03796
cram_decode_slice
[function]
[call site]
03797
__errno_location
[call site]
03798
__errno_location
[call site]
03799
hts_log
[function]
[call site]
03800
cram_free_slice
[function]
[call site]
03801
hts_tpool_process_len
[function]
[call site]
03802
pthread_mutex_lock
[call site]
03803
pthread_mutex_unlock
[call site]
03804
hts_tpool_process_qsize
[function]
[call site]
03805
hts_tpool_process_empty
[function]
[call site]
03806
hts_tpool_next_result_wait
[function]
[call site]
03807
hts_tpool_result_data
[function]
[call site]
03808
hts_log
[function]
[call site]
03809
hts_tpool_result_data
[function]
[call site]
03810
hts_log
[function]
[call site]
03811
hts_tpool_delete_result
[function]
[call site]
03812
hts_tpool_delete_result
[function]
[call site]
03813
cram_free_slice
[function]
[call site]
03814
cram_free_slice
[function]
[call site]
03815
cram_to_bam
[function]
[call site]
03816
strlen
[call site]
03817
append_uint64
[function]
[call site]
03818
append_uint32
[function]
[call site]
03819
append_uint32
[function]
[call site]
03820
append_sub32
[function]
[call site]
03821
append_uint32
[function]
[call site]
03822
append_sub32
[function]
[call site]
03823
append_uint64
[function]
[call site]
03824
bam_set1
[function]
[call site]
03825
bam_cigar2rqlens
[function]
[call site]
03826
hts_log
[function]
[call site]
03827
__errno_location
[call site]
03828
hts_log
[function]
[call site]
03829
__errno_location
[call site]
03830
hts_log
[function]
[call site]
03831
__errno_location
[call site]
03832
hts_log
[function]
[call site]
03833
__errno_location
[call site]
03834
subtract_check_underflow
[function]
[call site]
03835
subtract_check_underflow
[function]
[call site]
03836
subtract_check_underflow
[function]
[call site]
03837
subtract_check_underflow
[function]
[call site]
03838
subtract_check_underflow
[function]
[call site]
03839
hts_log
[function]
[call site]
03840
__errno_location
[call site]
03841
hts_add_sat2
[function]
[call site]
03842
realloc_bam_data
[function]
[call site]
03843
hts_reg2bin
[function]
[call site]
03844
strncpy
[call site]
03845
cram_eof
[function]
[call site]
03846
bam_tag2cigar
[function]
[call site]
03847
sam_read1_sam
[function]
[call site]
03848
sam_parse1
[function]
[call site]
03849
strchr
[call site]
03850
hts_log
[function]
[call site]
03851
hts_log
[function]
[call site]
03852
possibly_expand_bam_data
[function]
[call site]
03853
parse_sam_flag
[function]
[call site]
03854
hts_str2uint
[function]
[call site]
03855
strtoul
[call site]
03856
strchr
[call site]
03857
strcmp
[call site]
03858
hts_log
[function]
[call site]
03859
bam_name2id
[function]
[call site]
03860
sam_hdr_name2tid
[function]
[call site]
03861
sam_hdr_fill_hrecs
[function]
[call site]
03862
kh_get_m_s2i
[function]
[call site]
03863
hts_log
[function]
[call site]
03864
hts_strprint
[function]
[call site]
03865
isprint_c
[function]
[call site]
03866
__ctype_b_loc
[call site]
03867
strcpy
[call site]
03868
snprintf
[call site]
03869
hts_log
[function]
[call site]
03870
hts_str2uint
[function]
[call site]
03871
hts_log
[function]
[call site]
03872
hts_str2uint
[function]
[call site]
03873
bam_parse_cigar
[function]
[call site]
03874
hts_log
[function]
[call site]
03875
read_ncigar
[function]
[call site]
03876
isdigit_c
[function]
[call site]
03877
hts_log
[function]
[call site]
03878
hts_log
[function]
[call site]
03879
possibly_expand_bam_data
[function]
[call site]
03880
hts_log
[function]
[call site]
03881
parse_cigar
[function]
[call site]
03882
hts_str2uint
[function]
[call site]
03883
hts_log
[function]
[call site]
03884
hts_log
[function]
[call site]
03885
hts_log
[function]
[call site]
03886
bam_cigar2rlen
[function]
[call site]
03887
hts_log
[function]
[call site]
03888
strchr
[call site]
03889
hts_log
[function]
[call site]
03890
hts_reg2bin
[function]
[call site]
03891
strchr
[call site]
03892
strcmp
[call site]
03893
strcmp
[call site]
03894
bam_name2id
[function]
[call site]
03895
hts_log
[function]
[call site]
03896
hts_strprint
[function]
[call site]
03897
hts_log
[function]
[call site]
03898
hts_str2uint
[function]
[call site]
03899
hts_log
[function]
[call site]
03900
hts_str2int
[function]
[call site]
03901
hts_log
[function]
[call site]
03902
strchr
[call site]
03903
strcmp
[call site]
03904
hts_log
[function]
[call site]
03905
bam_cigar2qlen
[function]
[call site]
03906
hts_log
[function]
[call site]
03907
possibly_expand_bam_data
[function]
[call site]
03908
possibly_expand_bam_data
[function]
[call site]
03909
hts_log
[function]
[call site]
03910
hts_log
[function]
[call site]
03911
aux_parse
[function]
[call site]
03912
hts_log
[function]
[call site]
03913
isspace_c
[function]
[call site]
03914
hts_log
[function]
[call site]
03915
isspace_c
[function]
[call site]
03916
isspace_c
[function]
[call site]
03917
kh_get_tag
[function]
[call site]
03918
possibly_expand_bam_data
[function]
[call site]
03919
isspace_c
[function]
[call site]
03920
hts_log
[function]
[call site]
03921
possibly_expand_bam_data
[function]
[call site]
03922
hts_str2int
[function]
[call site]
03923
i16_to_le
[function]
[call site]
03924
u16_to_le
[function]
[call site]
03925
i32_to_le
[function]
[call site]
03926
u32_to_le
[function]
[call site]
03927
hts_str2uint
[function]
[call site]
03928
u16_to_le
[function]
[call site]
03929
u32_to_le
[function]
[call site]
03930
strtod
[call site]
03931
float_to_le
[function]
[call site]
03932
u32_to_le
[function]
[call site]
03933
strtod
[call site]
03934
double_to_le
[function]
[call site]
03935
u64_to_le
[function]
[call site]
03936
strchr
[call site]
03937
strlen
[call site]
03938
isspace_c
[function]
[call site]
03939
hts_log
[function]
[call site]
03940
possibly_expand_bam_data
[function]
[call site]
03941
isspace_c
[function]
[call site]
03942
hts_log
[function]
[call site]
03943
sam_parse_B_vals
[function]
[call site]
03944
sam_parse_B_vals_r
[function]
[call site]
03945
hts_log
[function]
[call site]
03946
aux_type2size
[function]
[call site]
03947
hts_log
[function]
[call site]
03948
possibly_expand_bam_data
[function]
[call site]
03949
hts_log
[function]
[call site]
03950
sam_parse_Bc_vals
[function]
[call site]
03951
grow_B_array
[function]
[call site]
03952
__errno_location
[call site]
03953
possibly_expand_bam_data
[function]
[call site]
03954
hts_log
[function]
[call site]
03955
hts_str2int
[function]
[call site]
03956
sam_parse_BC_vals
[function]
[call site]
03957
grow_B_array
[function]
[call site]
03958
hts_str2uint
[function]
[call site]
03959
sam_parse_Bs_vals
[function]
[call site]
03960
grow_B_array
[function]
[call site]
03961
hts_str2int
[function]
[call site]
03962
i16_to_le
[function]
[call site]
03963
sam_parse_BS_vals
[function]
[call site]
03964
grow_B_array
[function]
[call site]
03965
hts_str2uint
[function]
[call site]
03966
u16_to_le
[function]
[call site]
03967
sam_parse_Bi_vals
[function]
[call site]
03968
grow_B_array
[function]
[call site]
03969
hts_str2int
[function]
[call site]
03970
i32_to_le
[function]
[call site]
03971
sam_parse_BI_vals
[function]
[call site]
03972
grow_B_array
[function]
[call site]
03973
hts_str2uint
[function]
[call site]
03974
u32_to_le
[function]
[call site]
03975
sam_parse_Bf_vals
[function]
[call site]
03976
grow_B_array
[function]
[call site]
03977
strtod
[call site]
03978
float_to_le
[function]
[call site]
03979
hts_log
[function]
[call site]
03980
i32_to_le
[function]
[call site]
03981
hts_str2int
[function]
[call site]
03982
sam_parse_B_vals_r
[function]
[call site]
03983
sam_parse_B_vals_r
[function]
[call site]
03984
sam_parse_B_vals_r
[function]
[call site]
03985
sam_parse_B_vals_r
[function]
[call site]
03986
sam_parse_B_vals_r
[function]
[call site]
03987
sam_parse_B_vals_r
[function]
[call site]
03988
hts_log
[function]
[call site]
03989
isspace_c
[function]
[call site]
03990
hts_strprint
[function]
[call site]
03991
hts_log
[function]
[call site]
03992
isspace_c
[function]
[call site]
03993
hts_log
[function]
[call site]
03994
bam_tag2cigar
[function]
[call site]
03995
sam_state_destroy
[function]
[call site]
03996
__errno_location
[call site]
03997
bgzf_seek
[function]
[call site]
03998
bgzf_seek_common
[function]
[call site]
03999
sam_hdr_fill_hrecs
[function]
[call site]
04000
pthread_create
[call site]
04001
sam_dispatcher_read
[function]
[call site]
04002
ks_resize
[function]
[call site]
04003
pthread_mutex_lock
[call site]
04004
pthread_cond_signal
[call site]
04005
pthread_mutex_unlock
[call site]
04006
hts_tpool_process_shutdown
[function]
[call site]
04007
pthread_mutex_unlock
[call site]
04008
pthread_mutex_lock
[call site]
04009
pthread_mutex_unlock
[call site]
04010
calloc
[call site]
04011
hts_malloc_ps
[function]
[call site]
04012
hts_realloc_ps
[function]
[call site]
04013
hts_add_sat2
[function]
[call site]
04014
hts_prod_sat2
[function]
[call site]
04015
hts_realloc
[function]
[call site]
04016
bgzf_read
[function]
[call site]
04017
hread
[function]
[call site]
04018
__errno_location
[call site]
04019
sam_state_err
[function]
[call site]
04020
hts_realloc_pse
[function]
[call site]
04021
hts_add_sat2
[function]
[call site]
04022
hts_prod_sat2
[function]
[call site]
04023
hts_add_sat2
[function]
[call site]
04024
hts_realloc
[function]
[call site]
04025
__assert_fail
[call site]
04026
__assert_fail
[call site]
04027
__assert_fail
[call site]
04028
ks_resize
[function]
[call site]
04029
hts_tpool_dispatch3
[function]
[call site]
04030
sam_parse_worker
[function]
[call site]
04031
pthread_mutex_lock
[call site]
04032
pthread_mutex_unlock
[call site]
04033
calloc
[call site]
04034
calloc
[call site]
04035
sam_state_err
[function]
[call site]
04036
sam_state_err
[function]
[call site]
04037
hts_realloc_p
[function]
[call site]
04038
sam_state_err
[function]
[call site]
04039
strchr
[call site]
04040
sam_parse1
[function]
[call site]
04041
__errno_location
[call site]
04042
sam_state_err
[function]
[call site]
04043
cleanup_sp_lines
[function]
[call site]
04044
__assert_fail
[call site]
04045
sam_free_sp_bams
[function]
[call site]
04046
pthread_mutex_lock
[call site]
04047
pthread_mutex_unlock
[call site]
04048
sam_free_sp_bams
[function]
[call site]
04049
cleanup_sp_lines
[function]
[call site]
04050
cleanup_sp_bams
[function]
[call site]
04051
sam_free_sp_bams
[function]
[call site]
04052
pthread_mutex_lock
[call site]
04053
pthread_mutex_unlock
[call site]
04054
pthread_mutex_unlock
[call site]
04055
hts_tpool_dispatch
[function]
[call site]
04056
sam_parse_eof
[function]
[call site]
04057
pthread_cond_wait
[call site]
04058
pthread_cond_signal
[call site]
04059
pthread_mutex_unlock
[call site]
04060
hts_tpool_process_shutdown
[function]
[call site]
04061
pthread_mutex_unlock
[call site]
04062
pthread_mutex_lock
[call site]
04063
pthread_cond_signal
[call site]
04064
pthread_mutex_unlock
[call site]
04065
pthread_mutex_lock
[call site]
04066
pthread_mutex_unlock
[call site]
04067
__errno_location
[call site]
04068
sam_state_err
[function]
[call site]
04069
hts_tpool_process_shutdown
[function]
[call site]
04070
hts_log
[function]
[call site]
04071
__errno_location
[call site]
04072
pthread_mutex_lock
[call site]
04073
pthread_mutex_unlock
[call site]
04074
hts_tpool_next_result_wait
[function]
[call site]
04075
hts_tpool_result_data
[function]
[call site]
04076
pthread_mutex_lock
[call site]
04077
pthread_mutex_unlock
[call site]
04078
bam_copy1
[function]
[call site]
04079
realloc_bam_data
[function]
[call site]
04080
pthread_mutex_lock
[call site]
04081
pthread_mutex_unlock
[call site]
04082
hts_getline
[function]
[call site]
04083
sam_parse1
[function]
[call site]
04084
hts_log
[function]
[call site]
04085
fastq_state_init
[function]
[call site]
04086
fastq_parse1
[function]
[call site]
04087
hts_getline
[function]
[call site]
04088
strpbrk
[call site]
04089
isspace_c
[function]
[call site]
04090
isspace_c
[function]
[call site]
04091
hts_getline
[function]
[call site]
04092
kputsn
[function]
[call site]
04093
hts_getline
[function]
[call site]
04094
kputsn
[function]
[call site]
04095
isdigit_c
[function]
[call site]
04096
regexec
[call site]
04097
hts_log
[function]
[call site]
04098
isalpha_c
[function]
[call site]
04099
bam_set1
[function]
[call site]
04100
bam_aux_append
[function]
[call site]
04101
__assert_fail
[call site]
04102
realloc_bam_data
[function]
[call site]
04103
__errno_location
[call site]
04104
isdigit_c
[function]
[call site]
04105
strtol
[call site]
04106
isdigit_c
[function]
[call site]
04107
isspace_c
[function]
[call site]
04108
bam_aux_append
[function]
[call site]
04109
aux_parse
[function]
[call site]
04110
__errno_location
[call site]
04111
__errno_location
[call site]
04112
sam_passes_filter
[function]
[call site]
04113
hts_filter_eval2
[function]
[call site]
04114
ks_free
[function]
[call site]
04115
hts_filter_eval_
[function]
[call site]
04116
expression
[function]
[call site]
04117
and_expr
[function]
[call site]
04118
eq_expr
[function]
[call site]
04119
cmp_expr
[function]
[call site]
04120
bitor_expr
[function]
[call site]
04121
bitxor_expr
[function]
[call site]
04122
bitand_expr
[function]
[call site]
04123
add_expr
[function]
[call site]
04124
mul_expr
[function]
[call site]
04125
unary_expr
[function]
[call site]
04126
ws
[function]
[call site]
04127
simple_expr
[function]
[call site]
04128
ws
[function]
[call site]
04129
expression
[function]
[call site]
04130
ws
[function]
[call site]
04131
fprintf
[call site]
04132
hts_str2dbl
[function]
[call site]
04133
ks_clear
[function]
[call site]
04137
kputsn
[function]
[call site]
04138
func_expr
[function]
[call site]
04139
strncmp
[call site]
04140
expression
[function]
[call site]
04141
expr_func_avg
[function]
[call site]
04142
strncmp
[call site]
04143
expression
[function]
[call site]
04144
ws
[function]
[call site]
04145
expression
[function]
[call site]
04146
hts_expr_val_existsT
[function]
[call site]
04147
hts_expr_val_exists
[function]
[call site]
04148
hts_expr_val_free
[function]
[call site]
04149
ks_free
[function]
[call site]
04150
strncmp
[call site]
04151
expression
[function]
[call site]
04152
hts_expr_val_existsT
[function]
[call site]
04153
strncmp
[call site]
04154
expression
[function]
[call site]
04155
exp
[call site]
04156
hts_expr_val_undef
[function]
[call site]
04157
ks_clear
[function]
[call site]
04158
strncmp
[call site]
04159
expression
[function]
[call site]
04160
expr_func_length
[function]
[call site]
04161
strncmp
[call site]
04162
expression
[function]
[call site]
04163
log
[call site]
04164
hts_expr_val_undef
[function]
[call site]
04165
strncmp
[call site]
04166
expression
[function]
[call site]
04167
expr_func_min
[function]
[call site]
04168
strncmp
[call site]
04169
expression
[function]
[call site]
04170
expr_func_max
[function]
[call site]
04171
strncmp
[call site]
04172
expression
[function]
[call site]
04173
ws
[function]
[call site]
04174
expression
[function]
[call site]
04175
hts_expr_val_exists
[function]
[call site]
04176
hts_expr_val_undef
[function]
[call site]
04177
hts_expr_val_free
[function]
[call site]
04178
pow
[call site]
04179
hts_expr_val_free
[function]
[call site]
04180
hts_expr_val_undef
[function]
[call site]
04181
strncmp
[call site]
04182
expression
[function]
[call site]
04183
sqrt
[call site]
04184
hts_expr_val_undef
[function]
[call site]
04185
ws
[function]
[call site]
04186
fprintf
[call site]
04187
hts_expr_val_exists
[function]
[call site]
04188
hts_expr_val_undef
[function]
[call site]
04189
unary_expr
[function]
[call site]
04190
hts_expr_val_exists
[function]
[call site]
04191
unary_expr
[function]
[call site]
04192
hts_expr_val_exists
[function]
[call site]
04193
hts_expr_val_undef
[function]
[call site]
04194
hts_expr_val_exists
[function]
[call site]
04195
hts_expr_val_undef
[function]
[call site]
04196
simple_expr
[function]
[call site]
04197
ws
[function]
[call site]
04198
unary_expr
[function]
[call site]
04199
hts_expr_val_exists
[function]
[call site]
04200
hts_expr_val_undef
[function]
[call site]
04201
hts_expr_val_free
[function]
[call site]
04202
hts_expr_val_undef
[function]
[call site]
04203
hts_expr_val_exists
[function]
[call site]
04204
hts_expr_val_free
[function]
[call site]
04205
ws
[function]
[call site]
04206
mul_expr
[function]
[call site]
04207
hts_expr_val_exists
[function]
[call site]
04208
hts_expr_val_free
[function]
[call site]
04209
hts_expr_val_undef
[function]
[call site]
04210
hts_expr_val_free
[function]
[call site]
04211
ws
[function]
[call site]
04212
add_expr
[function]
[call site]
04213
hts_expr_val_exists
[function]
[call site]
04214
hts_expr_val_free
[function]
[call site]
04215
hts_expr_val_free
[function]
[call site]
04216
hts_expr_val_undef
[function]
[call site]
04217
ws
[function]
[call site]
04218
bitand_expr
[function]
[call site]
04219
hts_expr_val_exists
[function]
[call site]
04220
hts_expr_val_free
[function]
[call site]
04221
hts_expr_val_free
[function]
[call site]
04222
hts_expr_val_undef
[function]
[call site]
04223
ws
[function]
[call site]
04224
bitxor_expr
[function]
[call site]
04225
hts_expr_val_exists
[function]
[call site]
04226
hts_expr_val_free
[function]
[call site]
04227
hts_expr_val_free
[function]
[call site]
04228
hts_expr_val_undef
[function]
[call site]
04229
ws
[function]
[call site]
04230
cmp_expr
[function]
[call site]
04231
hts_expr_val_exists
[function]
[call site]
04232
hts_expr_val_undef
[function]
[call site]
04233
strcmp
[call site]
04234
cmp_expr
[function]
[call site]
04235
hts_expr_val_exists
[function]
[call site]
04236
hts_expr_val_undef
[function]
[call site]
04237
strcmp
[call site]
04238
cmp_expr
[function]
[call site]
04239
hts_expr_val_exists
[function]
[call site]
04240
hts_expr_val_undef
[function]
[call site]
04241
strcmp
[call site]
04242
cmp_expr
[function]
[call site]
04243
hts_expr_val_exists
[function]
[call site]
04244
hts_expr_val_undef
[function]
[call site]
04245
strcmp
[call site]
04246
hts_expr_val_exists
[function]
[call site]
04247
hts_expr_val_undef
[function]
[call site]
04248
hts_expr_val_free
[function]
[call site]
04249
ws
[function]
[call site]
04250
eq_expr
[function]
[call site]
04251
hts_expr_val_exists
[function]
[call site]
04252
hts_expr_val_undef
[function]
[call site]
04253
strcmp
[call site]
04254
eq_expr
[function]
[call site]
04255
hts_expr_val_exists
[function]
[call site]
04256
hts_expr_val_undef
[function]
[call site]
04257
strcmp
[call site]
04258
eq_expr
[function]
[call site]
04259
hts_expr_val_free
[function]
[call site]
04260
regcomp
[call site]
04261
regerror
[call site]
04262
fprintf
[call site]
04263
hts_expr_val_free
[function]
[call site]
04264
regexec
[call site]
04265
regfree
[call site]
04266
hts_expr_val_exists
[function]
[call site]
04267
hts_expr_val_undef
[function]
[call site]
04268
hts_expr_val_free
[function]
[call site]
04269
ws
[function]
[call site]
04270
eq_expr
[function]
[call site]
04271
hts_expr_val_existsT
[function]
[call site]
04272
hts_expr_val_undef
[function]
[call site]
04273
eq_expr
[function]
[call site]
04274
hts_expr_val_existsT
[function]
[call site]
04275
hts_expr_val_undef
[function]
[call site]
04276
hts_expr_val_existsT
[function]
[call site]
04277
hts_expr_val_undef
[function]
[call site]
04278
hts_expr_val_existsT
[function]
[call site]
04279
hts_expr_val_undef
[function]
[call site]
04280
hts_expr_val_free
[function]
[call site]
04281
ws
[function]
[call site]
04282
fprintf
[call site]
04283
hts_expr_val_exists
[function]
[call site]
04284
bam_sym_lookup
[function]
[call site]
04285
memcmp
[call site]
04286
ks_clear
[function]
[call site]
04287
kputw
[function]
[call site]
04288
kputc_
[function]
[call site]
04289
kputs
[function]
[call site]
04290
kputs
[function]
[call site]
04291
memcmp
[call site]
04292
bam_endpos
[function]
[call site]
04293
memcmp
[call site]
04294
memcmp
[call site]
04295
memcmp
[call site]
04296
memcmp
[call site]
04297
memcmp
[call site]
04298
memcmp
[call site]
04299
memcmp
[call site]
04300
memcmp
[call site]
04301
memcmp
[call site]
04302
memcmp
[call site]
04303
memcmp
[call site]
04304
memcmp
[call site]
04305
memcmp
[call site]
04306
hts_log
[function]
[call site]
04307
memcmp
[call site]
04308
memcmp
[call site]
04309
bam_get_library
[function]
[call site]
04310
bam_aux_get
[function]
[call site]
04311
sam_hdr_find_tag_id
[function]
[call site]
04312
ks_clear
[function]
[call site]
04313
kputs
[function]
[call site]
04314
memcmp
[call site]
04315
memcmp
[call site]
04316
memcmp
[call site]
04317
sam_hdr_tid2name
[function]
[call site]
04318
ks_clear
[function]
[call site]
04319
kputs
[function]
[call site]
04320
memcmp
[call site]
04321
memcmp
[call site]
04322
memcmp
[call site]
04323
memcmp
[call site]
04324
memcmp
[call site]
04325
bam_cigar2qlen
[function]
[call site]
04326
memcmp
[call site]
04327
ks_clear
[function]
[call site]
04328
kputs
[function]
[call site]
04329
memcmp
[call site]
04330
ks_clear
[function]
[call site]
04331
ks_resize
[function]
[call site]
04332
memcmp
[call site]
04333
bam_cigar2rlen
[function]
[call site]
04334
memcmp
[call site]
04335
sam_hdr_tid2name
[function]
[call site]
04336
ks_clear
[function]
[call site]
04337
kputs
[function]
[call site]
04338
memcmp
[call site]
04339
sam_hdr_tid2name
[function]
[call site]
04340
ks_clear
[function]
[call site]
04341
kputs
[function]
[call site]
04342
memcmp
[call site]
04343
memcmp
[call site]
04344
ks_clear
[function]
[call site]
04345
ks_resize
[function]
[call site]
04346
nibble2base
[function]
[call site]
04347
memcmp
[call site]
04348
memcmp
[call site]
04349
bam_aux_get
[function]
[call site]
04350
ks_clear
[function]
[call site]
04351
kputs
[function]
[call site]
04352
ks_clear
[function]
[call site]
04353
kputsn
[function]
[call site]
04354
bam_aux2i
[function]
[call site]
04355
get_int_aux_val
[function]
[call site]
04356
le_to_i8
[function]
[call site]
04357
le_to_i16
[function]
[call site]
04358
le_to_u16
[function]
[call site]
04359
le_to_i32
[function]
[call site]
04360
le_to_u32
[function]
[call site]
04361
__errno_location
[call site]
04362
bam_aux2f
[function]
[call site]
04363
le_to_double
[function]
[call site]
04364
le_to_float
[function]
[call site]
04365
get_int_aux_val
[function]
[call site]
04366
hts_log
[function]
[call site]
04367
hts_log
[function]
[call site]
04368
hts_expr_val_free
[function]
[call site]
04369
hts_expr_val_free
[function]
[call site]
04370
sam_write1
[function]
[call site]
04371
bam_write_idx1
[function]
[call site]
04372
bam_write1
[function]
[call site]
04373
hts_log
[function]
[call site]
04374
__errno_location
[call site]
04375
hts_log
[function]
[call site]
04376
bgzf_flush_try
[function]
[call site]
04377
lazy_flush
[function]
[call site]
04378
ed_swap_4p
[function]
[call site]
04379
ed_swap_4p
[function]
[call site]
04380
bgzf_write_small
[function]
[call site]
04381
bgzf_write
[function]
[call site]
04382
swap_data
[function]
[call site]
04383
bgzf_write_small
[function]
[call site]
04384
bgzf_write_small
[function]
[call site]
04385
bgzf_write_small
[function]
[call site]
04386
bgzf_write_small
[function]
[call site]
04387
bam_cigar2rlen
[function]
[call site]
04388
hts_log
[function]
[call site]
04389
u32_to_le
[function]
[call site]
04390
u32_to_le
[function]
[call site]
04391
bgzf_write_small
[function]
[call site]
04392
bgzf_write_small
[function]
[call site]
04393
bgzf_write_small
[function]
[call site]
04394
u32_to_le
[function]
[call site]
04395
bgzf_write_small
[function]
[call site]
04396
bgzf_write_small
[function]
[call site]
04397
swap_data
[function]
[call site]
04398
bgzf_flush_try
[function]
[call site]
04399
hts_idx_amend_last
[function]
[call site]
04400
bam_write1
[function]
[call site]
04401
bam_endpos
[function]
[call site]
04402
bgzf_idx_push
[function]
[call site]
04403
hts_idx_push
[function]
[call site]
04404
hts_idx_check_range
[function]
[call site]
04405
hts_idx_maxpos
[function]
[call site]
04406
hts_bin_maxpos
[function]
[call site]
04407
hts_log
[function]
[call site]
04408
idx_format_name
[function]
[call site]
04409
hts_log
[function]
[call site]
04410
__errno_location
[call site]
04411
hts_realloc_p
[function]
[call site]
04412
hts_realloc_p
[function]
[call site]
04413
hts_log
[function]
[call site]
04414
hts_log
[function]
[call site]
04415
hts_log
[function]
[call site]
04416
hts_log
[function]
[call site]
04417
kh_init_bin
[function]
[call site]
04418
calloc
[call site]
04419
insert_to_l
[function]
[call site]
04420
hts_realloc_p
[function]
[call site]
04421
hts_reg2bin
[function]
[call site]
04422
insert_to_b
[function]
[call site]
04423
kh_put_bin
[function]
[call site]
04424
kh_resize_bin
[function]
[call site]
04425
realloc
[call site]
04426
calloc
[call site]
04427
kh_del_bin
[function]
[call site]
04428
hts_realloc_p
[function]
[call site]
04429
insert_to_b
[function]
[call site]
04430
insert_to_b
[function]
[call site]
04431
hts_idx_check_range
[function]
[call site]
04432
pthread_mutex_lock
[call site]
04433
hts_realloc_p
[function]
[call site]
04434
pthread_mutex_unlock
[call site]
04435
pthread_mutex_unlock
[call site]
04436
sam_hdr_tid2name
[function]
[call site]
04437
sam_hdr_tid2len
[function]
[call site]
04438
kh_get_s2i
[function]
[call site]
04439
hts_log
[function]
[call site]
04440
cram_put_bam_seq
[function]
[call site]
04441
cram_new_container
[function]
[call site]
04442
pthread_mutex_lock
[call site]
04443
pthread_mutex_unlock
[call site]
04444
hts_log
[function]
[call site]
04445
pthread_mutex_lock
[call site]
04446
hts_log
[function]
[call site]
04447
pthread_mutex_unlock
[call site]
04448
cram_next_container
[function]
[call site]
04449
cram_update_curr_slice
[function]
[call site]
04450
hts_log
[function]
[call site]
04451
cram_flush_container_mt
[function]
[call site]
04452
cram_free_slice
[function]
[call site]
04453
cram_free_container
[function]
[call site]
04454
cram_new_container
[function]
[call site]
04455
pthread_mutex_lock
[call site]
04456
cram_new_slice
[function]
[call site]
04457
calloc
[call site]
04458
calloc
[call site]
04459
hts_malloc_p
[function]
[call site]
04460
hts_malloc_p
[function]
[call site]
04461
cram_new_block
[function]
[call site]
04462
cram_new_block
[function]
[call site]
04463
cram_new_block
[function]
[call site]
04464
cram_new_block
[function]
[call site]
04465
cram_new_block
[function]
[call site]
04466
cram_new_block
[function]
[call site]
04467
string_pool_create
[function]
[call site]
04468
kh_init_m_s2i
[function]
[call site]
04469
kh_init_m_s2i
[function]
[call site]
04470
cram_free_slice
[function]
[call site]
04471
pthread_mutex_lock
[call site]
04472
hts_log
[function]
[call site]
04473
pthread_mutex_unlock
[call site]
04474
pthread_mutex_lock
[call site]
04475
calloc
[call site]
04476
pthread_mutex_unlock
[call site]
04477
pthread_mutex_lock
[call site]
04478
calloc
[call site]
04479
pthread_mutex_unlock
[call site]
04480
pthread_mutex_lock
[call site]
04481
pthread_mutex_unlock
[call site]
04482
pthread_mutex_lock
[call site]
04483
calloc
[call site]
04484
pthread_mutex_unlock
[call site]
04485
pthread_mutex_unlock
[call site]
04486
bam_copy1
[function]
[call site]
04487
bam_dup1
[function]
[call site]
04488
bam_init1
[function]
[call site]
04489
bam_copy1
[function]
[call site]
04490
bam_destroy1
[function]
[call site]
04491
bam_cigar2qlen
[function]
[call site]
04492
hts_log
[function]
[call site]
04493
pthread_create
[call site]
04494
sam_dispatcher_write
[function]
[call site]
04495
hts_tpool_next_result_wait
[function]
[call site]
04496
hts_tpool_result_data
[function]
[call site]
04497
sam_state_err
[function]
[call site]
04498
bgzf_flush_try
[function]
[call site]
04499
bgzf_write
[function]
[call site]
04500
hwrite
[function]
[call site]
04501
bam_endpos
[function]
[call site]
04502
bgzf_idx_push
[function]
[call site]
04503
__errno_location
[call site]
04504
sam_state_err
[function]
[call site]
04505
sam_hdr_tid2name
[function]
[call site]
04506
sam_hdr_tid2len
[function]
[call site]
04507
hts_log
[function]
[call site]
04508
bam_endpos
[function]
[call site]
04509
hts_idx_push
[function]
[call site]
04510
__errno_location
[call site]
04511
sam_state_err
[function]
[call site]
04512
sam_hdr_tid2name
[function]
[call site]
04513
sam_hdr_tid2len
[function]
[call site]
04514
hts_log
[function]
[call site]
04515
__assert_fail
[call site]
04516
pthread_mutex_lock
[call site]
04517
pthread_mutex_unlock
[call site]
04518
bgzf_write
[function]
[call site]
04519
bgzf_flush_try
[function]
[call site]
04520
bgzf_write
[function]
[call site]
04521
hwrite
[function]
[call site]
04522
hts_tpool_delete_result
[function]
[call site]
04523
pthread_mutex_lock
[call site]
04524
pthread_mutex_unlock
[call site]
04525
sam_state_err
[function]
[call site]
04526
hts_tpool_process_shutdown
[function]
[call site]
04527
__errno_location
[call site]
04528
sam_state_err
[function]
[call site]
04529
hts_log
[function]
[call site]
04530
pthread_mutex_lock
[call site]
04531
pthread_mutex_unlock
[call site]
04532
pthread_mutex_unlock
[call site]
04533
calloc
[call site]
04534
calloc
[call site]
04535
bam_copy1
[function]
[call site]
04536
pthread_mutex_lock
[call site]
04537
pthread_mutex_unlock
[call site]
04538
hts_tpool_dispatch3
[function]
[call site]
04539
sam_format_worker
[function]
[call site]
04540
cleanup_sp_bams
[function]
[call site]
04541
cleanup_sp_lines
[function]
[call site]
04542
pthread_mutex_unlock
[call site]
04543
pthread_mutex_unlock
[call site]
04544
sam_format1
[function]
[call site]
04545
sam_format1_append
[function]
[call site]
04546
kputc
[function]
[call site]
04547
bgzf_flush_try
[function]
[call site]
04548
bgzf_write
[function]
[call site]
04549
hwrite
[function]
[call site]
04550
bam_endpos
[function]
[call site]
04551
bgzf_idx_push
[function]
[call site]
04552
sam_hdr_tid2name
[function]
[call site]
04553
sam_hdr_tid2len
[function]
[call site]
04554
hts_log
[function]
[call site]
04555
bam_endpos
[function]
[call site]
04556
hts_idx_push
[function]
[call site]
04557
sam_hdr_tid2name
[function]
[call site]
04558
sam_hdr_tid2len
[function]
[call site]
04559
hts_log
[function]
[call site]
04560
fastq_state_init
[function]
[call site]
04561
fastq_format1
[function]
[call site]
04562
kputc
[function]
[call site]
04563
kputs
[function]
[call site]
04564
bam_aux_get
[function]
[call site]
04565
kputc
[function]
[call site]
04566
isalpha_c
[function]
[call site]
04567
toupper_c
[function]
[call site]
04568
kputc
[function]
[call site]
04569
kputs
[function]
[call site]
04570
kputs
[function]
[call site]
04571
kputs
[function]
[call site]
04572
bam_aux_get
[function]
[call site]
04573
ksprintf
[function]
[call site]
04574
isupper_c
[function]
[call site]
04575
__ctype_b_loc
[call site]
04576
islower_c
[function]
[call site]
04577
__ctype_b_loc
[call site]
04578
hts_log
[function]
[call site]
04579
strlen
[call site]
04580
strlen
[call site]
04581
isalpha_c
[function]
[call site]
04582
islower_c
[function]
[call site]
04583
toupper_c
[function]
[call site]
04584
kh_get_tag
[function]
[call site]
04585
kputc_
[function]
[call site]
04586
sam_format_aux1
[function]
[call site]
04587
skip_aux
[function]
[call site]
04588
kputsn
[function]
[call site]
04589
ks_resize
[function]
[call site]
04590
kputc_
[function]
[call site]
04591
kputc_
[function]
[call site]
04592
kputc_
[function]
[call site]
04593
kputsn
[function]
[call site]
04594
kputc_
[function]
[call site]
04595
kputc_
[function]
[call site]
04596
kputc_
[function]
[call site]
04597
kputc
[function]
[call site]
04598
bgzf_flush_try
[function]
[call site]
04599
bgzf_write
[function]
[call site]
04600
hwrite
[function]
[call site]
04601
__errno_location
[call site]
04602
bam_destroy1
[function]
[call site]
04603
sam_hdr_destroy
[function]
[call site]
04604
hts_close_or_abort
[function]
[call site]
04605
hts_close
[function]
[call site]
04606
hts_close
[function]
[call site]
04607
view_sam
[function]
[call site]
04608
view_sam
[function]
[call site]
04609
view_vcf
[function]
[call site]
04610
abort
[call site]
04611
hopen
[function]
[call site]
04612
hts_hopen
[function]
[call site]
04613
hclose
[function]
[call site]
04614
abort
[call site]
04615
hts_open
[function]
[call site]
04616
abort
[call site]
04617
bcf_hdr_read
[function]
[call site]
04618
vcf_hdr_read
[function]
[call site]
04619
bcf_hdr_init
[function]
[call site]
04620
calloc
[call site]
04621
kh_init_vdict
[function]
[call site]
04622
calloc
[call site]
04623
kh_resize_vdict
[function]
[call site]
04624
realloc
[call site]
04625
__ac_FNV1a_hash_string
[function]
[call site]
04626
calloc
[call site]
04627
kh_init_hdict
[function]
[call site]
04628
strchr
[call site]
04629
bcf_hdr_append
[function]
[call site]
04630
bcf_hdr_parse_line
[function]
[call site]
04631
calloc
[call site]
04632
hts_malloc_ps
[function]
[call site]
04633
hts_malloc_p
[function]
[call site]
04634
isalpha_c
[function]
[call site]
04635
isalnum_c
[function]
[call site]
04636
bcf_hrec_add_key
[function]
[call site]
04637
__assert_fail
[call site]
04638
hts_realloc_p
[function]
[call site]
04639
hts_realloc_p
[function]
[call site]
04640
hts_malloc_ps
[function]
[call site]
04641
is_escaped
[function]
[call site]
04642
hts_strprint
[function]
[call site]
04643
hts_log
[function]
[call site]
04644
bcf_hrec_set_val
[function]
[call site]
04645
__errno_location
[call site]
04646
hts_malloc_ps
[function]
[call site]
04647
__errno_location
[call site]
04648
hts_malloc_ps
[function]
[call site]
04649
hts_log
[function]
[call site]
04650
isspace_c
[function]
[call site]
04651
hts_strprint
[function]
[call site]
04652
hts_log
[function]
[call site]
04653
bcf_hrec_destroy
[function]
[call site]
04654
hts_strprint
[function]
[call site]
04655
hts_log
[function]
[call site]
04656
bcf_hrec_destroy
[function]
[call site]
04657
bcf_hdr_add_hrec
[function]
[call site]
04658
get_hdr_aux
[function]
[call site]
04659
bcf_hrec_check
[function]
[call site]
04660
bcf_hrec_set_type
[function]
[call site]
04661
strcmp
[call site]
04662
strcmp
[call site]
04663
strcmp
[call site]
04664
strcmp
[call site]
04665
bcf_hrec_find_key
[function]
[call site]
04666
strcasecmp
[call site]
04667
bcf_hrec_find_key
[function]
[call site]
04668
strcmp
[call site]
04669
bcf_hrec_find_key
[function]
[call site]
04670
hts_log
[function]
[call site]
04671
hts_log
[function]
[call site]
04672
hts_log
[function]
[call site]
04673
bcf_hdr_register_hrec
[function]
[call site]
04674
bcf_hrec_set_type
[function]
[call site]
04675
bcf_hrec_find_key
[function]
[call site]
04676
strtoll
[call site]
04677
bcf_hrec_find_key
[function]
[call site]
04678
strdup
[call site]
04679
kh_get_vdict
[function]
[call site]
04680
strcmp
[call site]
04681
kh_put_vdict
[function]
[call site]
04682
kh_resize_vdict
[function]
[call site]
04683
bcf_hrec_find_key
[function]
[call site]
04684
strtol
[call site]
04685
kh_del_vdict
[function]
[call site]
04686
hts_log
[function]
[call site]
04687
bcf_hdr_set_idx
[function]
[call site]
04688
hts_log
[function]
[call site]
04689
__errno_location
[call site]
04690
hts_resize_array_
[function]
[call site]
04691
hts_log
[function]
[call site]
04692
__errno_location
[call site]
04693
realloc
[call site]
04694
__errno_location
[call site]
04695
__errno_location
[call site]
04696
strerror
[call site]
04697
hts_log
[function]
[call site]
04698
__errno_location
[call site]
04699
abort
[call site]
04700
abort
[call site]
04701
kh_del_vdict
[function]
[call site]
04702
hrec_add_idx
[function]
[call site]
04703
hts_realloc_p
[function]
[call site]
04704
hts_realloc_p
[function]
[call site]
04705
strdup
[call site]
04706
kputw
[function]
[call site]
04707
strcmp
[call site]
04708
strcmp
[call site]
04709
strtol
[call site]
04710
hts_log
[function]
[call site]
04711
strcmp
[call site]
04712
strcmp
[call site]
04713
strcmp
[call site]
04714
strcmp
[call site]
04715
strcmp
[call site]
04716
strcmp
[call site]
04717
hts_log
[function]
[call site]
04718
strcmp
[call site]
04719
strcmp
[call site]
04720
strcmp
[call site]
04721
strcmp
[call site]
04722
strcmp
[call site]
04723
strcmp
[call site]
04724
strcmp
[call site]
04725
strcmp
[call site]
04726
strcmp
[call site]
04727
strcmp
[call site]
04728
__isoc99_sscanf
[call site]
04729
hts_log
[function]
[call site]
04730
hts_log
[function]
[call site]
04731
hts_log
[function]
[call site]
04732
strdup
[call site]
04733
kh_get_vdict
[function]
[call site]
04734
hrec_add_idx
[function]
[call site]
04735
kh_put_vdict
[function]
[call site]
04736
bcf_hdr_set_idx
[function]
[call site]
04737
kh_del_vdict
[function]
[call site]
04738
hrec_add_idx
[function]
[call site]
04739
bcf_hrec_destroy
[function]
[call site]
04740
ksprintf
[function]
[call site]
04741
kh_get_hdict
[function]
[call site]
04742
bcf_hrec_destroy
[function]
[call site]
04743
strcmp
[call site]
04744
bcf_get_version
[function]
[call site]
04745
get_hdr_aux
[function]
[call site]
04746
bcf_hdr_get_version
[function]
[call site]
04747
bcf_hdr_get_hrec
[function]
[call site]
04748
ksprintf
[function]
[call site]
04749
get_hdr_aux
[function]
[call site]
04750
kh_get_hdict
[function]
[call site]
04751
strcmp
[call site]
04752
strcmp
[call site]
04753
ksprintf
[function]
[call site]
04754
get_hdr_aux
[function]
[call site]
04755
kh_get_hdict
[function]
[call site]
04756
strcmp
[call site]
04757
bcf_hrec_find_key
[function]
[call site]
04758
strcmp
[call site]
04759
kh_get_vdict
[function]
[call site]
04760
hts_log
[function]
[call site]
04761
strstr
[call site]
04762
strchr
[call site]
04763
strtol
[call site]
04764
__errno_location
[call site]
04765
__errno_location
[call site]
04766
strtol
[call site]
04767
__errno_location
[call site]
04768
hts_log
[function]
[call site]
04769
bcf_hrec_find_key
[function]
[call site]
04770
ksprintf
[function]
[call site]
04771
kh_get_hdict
[function]
[call site]
04772
bcf_hrec_destroy
[function]
[call site]
04773
hts_realloc_p
[function]
[call site]
04774
bcf_hdr_unregister_hrec
[function]
[call site]
04775
bcf_hrec_find_key
[function]
[call site]
04776
kh_get_vdict
[function]
[call site]
04777
kh_put_hdict
[function]
[call site]
04778
kh_resize_hdict
[function]
[call site]
04779
bcf_hdr_append
[function]
[call site]
04780
kh_destroy_vdict
[function]
[call site]
04781
hts_getline
[function]
[call site]
04782
hts_log
[function]
[call site]
04783
hopen
[function]
[call site]
04784
hts_log
[function]
[call site]
04785
khgetline
[function]
[call site]
04786
strchr
[call site]
04787
kputs
[function]
[call site]
04788
kputsn
[function]
[call site]
04789
kputs
[function]
[call site]
04790
atol
[call site]
04791
kputl
[function]
[call site]
04792
kputll
[function]
[call site]
04793
kputsn
[function]
[call site]
04794
hclose
[function]
[call site]
04795
kputsn
[function]
[call site]
04796
kputc
[function]
[call site]
04797
hts_log
[function]
[call site]
04798
bcf_hdr_parse
[function]
[call site]
04799
bcf_hdr_parse_line
[function]
[call site]
04800
strcasecmp
[call site]
04801
hts_log
[function]
[call site]
04802
bcf_hdr_add_hrec
[function]
[call site]
04803
bcf_hrec_destroy
[function]
[call site]
04804
bcf_hdr_parse_line
[function]
[call site]
04805
bcf_hdr_add_hrec
[function]
[call site]
04806
bcf_hrec_destroy
[function]
[call site]
04807
bcf_hdr_parse_line
[function]
[call site]
04808
bcf_hdr_add_hrec
[function]
[call site]
04809
bcf_hrec_destroy
[function]
[call site]
04810
__assert_fail
[call site]
04811
__errno_location
[call site]
04812
strerror
[call site]
04813
hts_log
[function]
[call site]
04814
strncmp
[call site]
04815
strchr
[call site]
04816
hts_strprint
[function]
[call site]
04817
hts_log
[function]
[call site]
04818
hts_log
[function]
[call site]
04819
bcf_hdr_parse_sample_line
[function]
[call site]
04820
strlen
[call site]
04821
strncmp
[call site]
04822
hts_log
[function]
[call site]
04823
strlen
[call site]
04824
strncmp
[call site]
04825
hts_log
[function]
[call site]
04826
bcf_hdr_add_sample_len
[function]
[call site]
04827
isspace_c
[function]
[call site]
04828
hts_realloc_ps
[function]
[call site]
04829
kh_put_vdict
[function]
[call site]
04830
hts_log
[function]
[call site]
04831
bcf_hdr_sync
[function]
[call site]
04832
hts_realloc_p
[function]
[call site]
04833
get_hdr_aux
[function]
[call site]
04834
bcf_hdr_check_sanity
[function]
[call site]
04835
bcf_get_version
[function]
[call site]
04836
bcf_hdr_id2int
[function]
[call site]
04837
kh_get_vdict
[function]
[call site]
04838
atoi
[call site]
04839
hts_log
[function]
[call site]
04840
hts_log
[function]
[call site]
04841
bcf_hdr_id2int
[function]
[call site]
04842
atoi
[call site]
04843
hts_log
[function]
[call site]
04844
hts_log
[function]
[call site]
04845
tbx_index_load3
[function]
[call site]
04846
index_load
[function]
[call site]
04847
calloc
[call site]
04848
hts_idx_load3
[function]
[call site]
04849
idx_find_and_load
[function]
[call site]
04850
strstr
[call site]
04851
strdup
[call site]
04852
__errno_location
[call site]
04853
strerror
[call site]
04854
hts_log
[function]
[call site]
04855
hts_idx_load3
[function]
[call site]
04856
hisremote
[function]
[call site]
04857
stat
[call site]
04858
hts_log
[function]
[call site]
04859
idx_test_and_fetch
[function]
[call site]
04860
hisremote
[function]
[call site]
04861
strncmp
[call site]
04862
strcspn
[call site]
04863
kputsn
[function]
[call site]
04864
access
[call site]
04865
hopen
[function]
[call site]
04866
hts_log
[function]
[call site]
04867
hts_detect_format2
[function]
[call site]
04868
hts_log
[function]
[call site]
04869
hts_log
[function]
[call site]
04870
hts_open_tmpfile
[function]
[call site]
04871
hts_log
[function]
[call site]
04872
hts_log
[function]
[call site]
04873
calloc
[call site]
04874
__errno_location
[call site]
04875
strerror
[call site]
04876
hts_log
[function]
[call site]
04877
hread
[function]
[call site]
04878
hwrite
[function]
[call site]
04879
__errno_location
[call site]
04880
strerror
[call site]
04881
hts_log
[function]
[call site]
04882
hts_log
[function]
[call site]
04883
hclose
[function]
[call site]
04884
__errno_location
[call site]
04885
strerror
[call site]
04886
hts_log
[function]
[call site]
04887
rename
[call site]
04888
__errno_location
[call site]
04889
strerror
[call site]
04890
hts_log
[function]
[call site]
04891
ks_clear
[function]
[call site]
04892
hclose
[function]
[call site]
04893
hts_log
[function]
[call site]
04894
hopen
[function]
[call site]
04895
hclose_abruptly
[function]
[call site]
04896
strlen
[call site]
04897
__errno_location
[call site]
04898
hclose_abruptly
[function]
[call site]
04899
hclose_abruptly
[function]
[call site]
04900
unlink
[call site]
04901
__errno_location
[call site]
04902
strdup
[call site]
04903
idx_read
[function]
[call site]
04904
bgzf_open
[function]
[call site]
04905
ed_is_big
[function]
[call site]
04906
bgzf_read
[function]
[call site]
04907
memcmp
[call site]
04908
bgzf_read
[function]
[call site]
04909
ed_swap_4p
[function]
[call site]
04910
hts_malloc_ps
[function]
[call site]
04911
bgzf_read
[function]
[call site]
04912
bgzf_read
[function]
[call site]
04913
ed_swap_4p
[function]
[call site]
04914
hts_idx_init
[function]
[call site]
04915
idx_read_core
[function]
[call site]
04919
ed_is_big
[function]
[call site]
04920
kh_init_bin
[function]
[call site]
04921
bgzf_read
[function]
[call site]
04922
ed_swap_4p
[function]
[call site]
04923
bgzf_read
[function]
[call site]
04924
ed_swap_4p
[function]
[call site]
04925
kh_put_bin
[function]
[call site]
04926
bgzf_read
[function]
[call site]
04927
ed_swap_8p
[function]
[call site]
04928
bgzf_read
[function]
[call site]
04929
ed_swap_4p
[function]
[call site]
04930
hts_malloc_p
[function]
[call site]
04931
bgzf_read
[function]
[call site]
04932
swap_bins
[function]
[call site]
04933
ed_swap_8p
[function]
[call site]
04934
ed_swap_8p
[function]
[call site]
04935
bgzf_read
[function]
[call site]
04936
ed_swap_4p
[function]
[call site]
04937
hts_malloc_p
[function]
[call site]
04938
bgzf_read
[function]
[call site]
04939
ed_swap_8p
[function]
[call site]
04940
update_loff
[function]
[call site]
04941
hts_bin_bot
[function]
[call site]
04942
hts_bin_level
[function]
[call site]
04943
bgzf_read
[function]
[call site]
04944
ed_swap_8p
[function]
[call site]
04945
memcmp
[call site]
04946
bgzf_read
[function]
[call site]
04947
le_to_u32
[function]
[call site]
04948
hts_idx_init
[function]
[call site]
04949
le_to_u32
[function]
[call site]
04950
hts_malloc_ps
[function]
[call site]
04951
bgzf_read
[function]
[call site]
04952
idx_read_core
[function]
[call site]
04953
memcmp
[call site]
04954
bgzf_read
[function]
[call site]
04955
ed_swap_4p
[function]
[call site]
04956
hts_idx_init
[function]
[call site]
04957
idx_read_core
[function]
[call site]
04958
__errno_location
[call site]
04959
bgzf_close
[function]
[call site]
04960
bgzf_close
[function]
[call site]
04961
hts_idx_destroy
[function]
[call site]
04962
__errno_location
[call site]
04963
strerror
[call site]
04964
hts_log
[function]
[call site]
04965
hts_idx_check_local
[function]
[call site]
04966
hisremote
[function]
[call site]
04967
strlen
[call site]
04968
strncmp
[call site]
04969
strncmp
[call site]
04970
hts_log
[function]
[call site]
04971
strlen
[call site]
04972
calloc
[call site]
04973
strcpy
[call site]
04974
stat
[call site]
04975
strcpy
[call site]
04976
stat
[call site]
04977
strcpy
[call site]
04978
stat
[call site]
04979
strcpy
[call site]
04980
stat
[call site]
04981
strcpy
[call site]
04982
stat
[call site]
04983
strcpy
[call site]
04984
stat
[call site]
04985
strcpy
[call site]
04986
stat
[call site]
04987
strcpy
[call site]
04988
stat
[call site]
04989
strcpy
[call site]
04990
strcmp
[call site]
04991
strcmp
[call site]
04992
strcpy
[call site]
04993
stat
[call site]
04994
strcpy
[call site]
04995
stat
[call site]
04996
hisremote
[function]
[call site]
04997
idx_filename
[function]
[call site]
04998
haddextension
[function]
[call site]
04999
find_scheme_handler
[function]
[call site]
05000
strncmp
[call site]
05001
strcspn
[call site]
05002
strchr
[call site]
05003
strip_extension
[function]
[call site]
05004
kputsn
[function]
[call site]
05005
kputs
[function]
[call site]
05006
kputs
[function]
[call site]
05007
idx_test_and_fetch
[function]
[call site]
05008
haddextension
[function]
[call site]
05009
idx_test_and_fetch
[function]
[call site]
05010
idx_filename
[function]
[call site]
05011
idx_filename
[function]
[call site]
05012
idx_filename
[function]
[call site]
05013
idx_filename
[function]
[call site]
05014
idx_filename
[function]
[call site]
05015
hts_log
[function]
[call site]
05016
hts_idx_load3
[function]
[call site]
05017
idx_read
[function]
[call site]
05018
hts_idx_get_meta
[function]
[call site]
05019
le_to_i32
[function]
[call site]
05020
le_to_i32
[function]
[call site]
05021
le_to_i32
[function]
[call site]
05022
le_to_i32
[function]
[call site]
05023
le_to_i32
[function]
[call site]
05024
le_to_i32
[function]
[call site]
05025
le_to_u32
[function]
[call site]
05026
get_tid
[function]
[call site]
05027
kh_init_s2i
[function]
[call site]
05028
kh_put_s2i
[function]
[call site]
05029
strdup
[call site]
05030
kh_del_s2i
[function]
[call site]
05031
kh_get_s2i
[function]
[call site]
05032
__errno_location
[call site]
05033
strerror
[call site]
05034
hts_log
[function]
[call site]
05035
strlen
[call site]
05036
hts_log
[function]
[call site]
05037
tbx_destroy
[function]
[call site]
05038
hts_idx_destroy
[function]
[call site]
05039
kh_destroy_s2i
[function]
[call site]
05040
tbx_seqnames
[function]
[call site]
05041
calloc
[call site]
05042
calloc
[call site]
05043
__assert_fail
[call site]
05044
__assert_fail
[call site]
05045
bcf_hdr_get_hrec
[function]
[call site]
05046
add_missing_contig_hrec
[function]
[call site]
05047
calloc
[call site]
05048
strdup
[call site]
05049
bcf_hrec_add_key
[function]
[call site]
05050
strlen
[call site]
05051
bcf_hrec_set_val
[function]
[call site]
05052
bcf_hdr_add_hrec
[function]
[call site]
05053
__errno_location
[call site]
05054
__errno_location
[call site]
05055
strerror
[call site]
05056
hts_log
[function]
[call site]
05057
bcf_hrec_destroy
[function]
[call site]
05058
__errno_location
[call site]
05059
bcf_hdr_sync
[function]
[call site]
05060
tbx_destroy
[function]
[call site]
05061
tbx_destroy
[function]
[call site]
05062
bcf_hdr_destroy
[function]
[call site]
05063
get_hdr_aux
[function]
[call site]
05064
kh_destroy_hdict
[function]
[call site]
05065
kh_destroy_vdict
[function]
[call site]
05066
bcf_hrec_destroy
[function]
[call site]
05067
hts_log
[function]
[call site]
05068
__assert_fail
[call site]
05069
bcf_hdr_init
[function]
[call site]
05070
hts_log
[function]
[call site]
05071
bgzf_read
[function]
[call site]
05072
hts_log
[function]
[call site]
05073
bcf_hdr_destroy
[function]
[call site]
05074
strncmp
[call site]
05075
strncmp
[call site]
05076
hts_log
[function]
[call site]
05077
hts_log
[function]
[call site]
05078
bcf_hdr_destroy
[function]
[call site]
05079
bgzf_read
[function]
[call site]
05080
__errno_location
[call site]
05081
__errno_location
[call site]
05082
bgzf_read
[function]
[call site]
05083
bcf_hdr_parse
[function]
[call site]
05084
bcf_hdr_incr_ref
[function]
[call site]
05085
get_hdr_aux
[function]
[call site]
05086
bgzf_set_private_data
[function]
[call site]
05087
__assert_fail
[call site]
05088
hdr_bgzf_private_data_cleanup
[function]
[call site]
05089
bcf_hdr_decr_ref
[function]
[call site]
05090
get_hdr_aux
[function]
[call site]
05091
bcf_hdr_destroy
[function]
[call site]
05092
hts_log
[function]
[call site]
05093
bcf_hdr_destroy
[function]
[call site]
05094
hts_close_or_abort
[function]
[call site]
05095
hts_close
[function]
[call site]
05096
bcf_hdr_write
[function]
[call site]
05097
__errno_location
[call site]
05098
bcf_hdr_sync
[function]
[call site]
05099
vcf_hdr_write
[function]
[call site]
05100
bcf_hdr_format
[function]
[call site]
05101
_bcf_hrec_format
[function]
[call site]
05102
ksprintf
[function]
[call site]
05103
strcmp
[call site]
05104
kputc
[function]
[call site]
05105
ksprintf
[function]
[call site]
05106
ksprintf
[function]
[call site]
05107
ksprintf
[function]
[call site]
05108
ksprintf
[function]
[call site]
05109
ksprintf
[function]
[call site]
05110
ksprintf
[function]
[call site]
05111
ksprintf
[function]
[call site]
05112
bgzf_write
[function]
[call site]
05113
bgzf_flush
[function]
[call site]
05114
hwrite
[function]
[call site]
05115
bcf_hdr_format
[function]
[call site]
05116
kputc
[function]
[call site]
05117
bgzf_write
[function]
[call site]
05118
u32_to_le
[function]
[call site]
05119
bgzf_write
[function]
[call site]
05120
bgzf_write
[function]
[call site]
05121
bgzf_flush
[function]
[call site]
05122
bcf_hdr_incr_ref
[function]
[call site]
05123
bgzf_set_private_data
[function]
[call site]
05124
hdr_bgzf_private_data_cleanup
[function]
[call site]
05125
bcf_init
[function]
[call site]
05126
calloc
[call site]
05127
bcf_read
[function]
[call site]
05128
vcf_read
[function]
[call site]
05129
hts_getline
[function]
[call site]
05130
vcf_parse
[function]
[call site]
05131
ks_resize
[function]
[call site]
05132
bcf_clear
[function]
[call site]
05133
bcf_float_set
[function]
[call site]
05134
kstrtok
[function]
[call site]
05135
kh_get_vdict
[function]
[call site]
05136
hts_log
[function]
[call site]
05137
fix_chromosome
[function]
[call site]
05138
ksprintf
[function]
[call site]
05139
bcf_hdr_parse_line
[function]
[call site]
05140
bcf_hdr_add_hrec
[function]
[call site]
05141
bcf_hrec_destroy
[function]
[call site]
05142
bcf_hdr_sync
[function]
[call site]
05143
kh_get_vdict
[function]
[call site]
05144
hts_log
[function]
[call site]
05145
kstrtok
[function]
[call site]
05146
hts_str2uint
[function]
[call site]
05147
hts_log
[function]
[call site]
05148
hts_log
[function]
[call site]
05149
kstrtok
[function]
[call site]
05150
memcmp
[call site]
05151
bcf_enc_vchar
[function]
[call site]
05152
bcf_enc_size
[function]
[call site]
05153
ks_resize
[function]
[call site]
05154
ks_resize
[function]
[call site]
05155
i16_to_le
[function]
[call site]
05156
i32_to_le
[function]
[call site]
05157
kputsn
[function]
[call site]
05158
bcf_enc_size
[function]
[call site]
05159
kstrtok
[function]
[call site]
05160
bcf_enc_vchar
[function]
[call site]
05161
kstrtok
[function]
[call site]
05162
memcmp
[call site]
05163
bcf_seqname_safe
[function]
[call site]
05164
bcf_seqname
[function]
[call site]
05165
bcf_hdr_id2name
[function]
[call site]
05166
hts_log
[function]
[call site]
05167
bcf_enc_vchar
[function]
[call site]
05168
kstrtok
[function]
[call site]
05169
memcmp
[call site]
05170
atof
[call site]
05171
bcf_float_set
[function]
[call site]
05172
kstrtok
[function]
[call site]
05173
memcmp
[call site]
05174
vcf_parse_filter
[function]
[call site]
05175
hts_malloc_p
[function]
[call site]
05176
bcf_seqname_safe
[function]
[call site]
05177
hts_log
[function]
[call site]
05178
kstrtok
[function]
[call site]
05179
kh_get_vdict
[function]
[call site]
05180
hts_log
[function]
[call site]
05181
ksprintf
[function]
[call site]
05182
bcf_hdr_parse_line
[function]
[call site]
05183
bcf_hdr_add_hrec
[function]
[call site]
05184
bcf_hrec_destroy
[function]
[call site]
05185
bcf_hdr_sync
[function]
[call site]
05186
kh_get_vdict
[function]
[call site]
05187
bcf_seqname_safe
[function]
[call site]
05188
hts_log
[function]
[call site]
05189
bcf_enc_vint
[function]
[call site]
05190
bcf_enc_size
[function]
[call site]
05191
bcf_enc_int1
[function]
[call site]
05192
ks_resize
[function]
[call site]
05193
i16_to_le
[function]
[call site]
05194
i32_to_le
[function]
[call site]
05195
bcf_enc_size
[function]
[call site]
05196
ks_resize
[function]
[call site]
05197
bcf_enc_size
[function]
[call site]
05198
ks_resize
[function]
[call site]
05199
i16_to_le
[function]
[call site]
05200
bcf_enc_size
[function]
[call site]
05201
ks_resize
[function]
[call site]
05202
i32_to_le
[function]
[call site]
05203
bcf_enc_vint
[function]
[call site]
05204
kstrtok
[function]
[call site]
05205
memcmp
[call site]
05206
vcf_parse_info
[function]
[call site]
05207
bcf_seqname_safe
[function]
[call site]
05208
hts_log
[function]
[call site]
05209
kh_get_vdict
[function]
[call site]
05210
hts_log
[function]
[call site]
05211
ksprintf
[function]
[call site]
05212
bcf_hdr_parse_line
[function]
[call site]
05213
bcf_hdr_add_hrec
[function]
[call site]
05214
bcf_hrec_destroy
[function]
[call site]
05215
bcf_hdr_sync
[function]
[call site]
05216
kh_get_vdict
[function]
[call site]
05217
bcf_seqname_safe
[function]
[call site]
05218
hts_log
[function]
[call site]
05219
bcf_enc_int1
[function]
[call site]
05220
bcf_enc_size
[function]
[call site]
05221
bcf_enc_vchar
[function]
[call site]
05222
hts_realloc_p
[function]
[call site]
05223
bcf_seqname_safe
[function]
[call site]
05224
hts_log
[function]
[call site]
05225
hts_str2int
[function]
[call site]
05226
bcf_seqname_safe
[function]
[call site]
05227
hts_log
[function]
[call site]
05228
bcf_enc_int1
[function]
[call site]
05229
bcf_enc_vint
[function]
[call site]
05230
memcmp
[call site]
05231
bcf_seqname_safe
[function]
[call site]
05232
hts_log
[function]
[call site]
05233
hts_str2dbl
[function]
[call site]
05234
bcf_float_set
[function]
[call site]
05235
bcf_enc_vfloat
[function]
[call site]
05236
__assert_fail
[call site]
05237
bcf_enc_size
[function]
[call site]
05238
serialize_float_array
[function]
[call site]
05239
ks_resize
[function]
[call site]
05240
float_to_le
[function]
[call site]
05241
kstrtok
[function]
[call site]
05242
vcf_parse_format
[function]
[call site]
05243
vcf_parse_format_empty1
[function]
[call site]
05244
bcf_seqname_safe
[function]
[call site]
05245
hts_log
[function]
[call site]
05246
vcf_parse_format_dict2
[function]
[call site]
05247
kstrtok
[function]
[call site]
05248
bcf_seqname_safe
[function]
[call site]
05249
hts_log
[function]
[call site]
05250
kh_get_vdict
[function]
[call site]
05251
bcf_seqname_safe
[function]
[call site]
05252
hts_log
[function]
[call site]
05253
bcf_seqname_safe
[function]
[call site]
05254
hts_log
[function]
[call site]
05255
ksprintf
[function]
[call site]
05256
bcf_hdr_parse_line
[function]
[call site]
05257
bcf_hdr_add_hrec
[function]
[call site]
05258
bcf_hrec_destroy
[function]
[call site]
05259
bcf_hdr_sync
[function]
[call site]
05260
kh_get_vdict
[function]
[call site]
05261
bcf_seqname_safe
[function]
[call site]
05262
hts_log
[function]
[call site]
05263
vcf_parse_format_max3
[function]
[call site]
05264
hts_log
[function]
[call site]
05265
vcf_parse_format_alloc4
[function]
[call site]
05266
bcf_seqname_safe
[function]
[call site]
05267
hts_log
[function]
[call site]
05268
align_mem
[function]
[call site]
05269
kputsn
[function]
[call site]
05270
bcf_seqname_safe
[function]
[call site]
05271
hts_log
[function]
[call site]
05272
bcf_seqname_safe
[function]
[call site]
05273
hts_log
[function]
[call site]
05274
ks_resize
[function]
[call site]
05275
bcf_seqname_safe
[function]
[call site]
05276
hts_log
[function]
[call site]
05277
bcf_seqname_safe
[function]
[call site]
05278
hts_log
[function]
[call site]
05279
vcf_parse_format_fill5
[function]
[call site]
05280
bcf_get_version
[function]
[call site]
05281
bcf_seqname_safe
[function]
[call site]
05282
hts_log
[function]
[call site]
05283
hts_str2uint
[function]
[call site]
05284
bcf_seqname_safe
[function]
[call site]
05285
hts_log
[function]
[call site]
05286
bcf_seqname_safe
[function]
[call site]
05287
hts_log
[function]
[call site]
05288
hts_str2int
[function]
[call site]
05289
bcf_seqname_safe
[function]
[call site]
05290
hts_log
[function]
[call site]
05291
isdigit_c
[function]
[call site]
05292
bcf_float_set
[function]
[call site]
05293
hts_str2dbl
[function]
[call site]
05294
bcf_seqname
[function]
[call site]
05295
hts_log
[function]
[call site]
05296
bcf_float_set
[function]
[call site]
05297
bcf_float_set
[function]
[call site]
05298
bcf_seqname_safe
[function]
[call site]
05299
hts_log
[function]
[call site]
05300
hts_strprint
[function]
[call site]
05301
bcf_seqname_safe
[function]
[call site]
05302
hts_log
[function]
[call site]
05303
bcf_float_set
[function]
[call site]
05304
bcf_float_set
[function]
[call site]
05305
vcf_parse_format_gt6
[function]
[call site]
05306
bcf_enc_int1
[function]
[call site]
05307
bcf_enc_size
[function]
[call site]
05308
kputsn
[function]
[call site]
05309
bcf_enc_vint
[function]
[call site]
05310
bcf_enc_size
[function]
[call site]
05311
serialize_float_array
[function]
[call site]
05312
bcf_seqname_safe
[function]
[call site]
05313
hts_log
[function]
[call site]
05314
vcf_parse_format_check7
[function]
[call site]
05315
bcf_seqname_safe
[function]
[call site]
05316
hts_log
[function]
[call site]
05317
bcf_seqname_safe
[function]
[call site]
05318
hts_log
[function]
[call site]
05319
get_rlen
[function]
[call site]
05320
bcf_hdr_id2int
[function]
[call site]
05321
svlen_on_ref_for_vcf_alt
[function]
[call site]
05322
strlen
[call site]
05323
memcmp
[call site]
05324
memcmp
[call site]
05325
memcmp
[call site]
05326
memcmp
[call site]
05327
strcmp
[call site]
05328
strcmp
[call site]
05329
strlen
[call site]
05330
bcf_dec_size
[function]
[call site]
05331
bcf_dec_typed_int1
[function]
[call site]
05332
bcf_dec_int1
[function]
[call site]
05333
le_to_i8
[function]
[call site]
05334
le_to_i16
[function]
[call site]
05335
le_to_i32
[function]
[call site]
05336
le_to_i64
[function]
[call site]
05337
le_to_u64
[function]
[call site]
05338
bcf_dec_size
[function]
[call site]
05339
svlen_on_ref_for_vcf_alt
[function]
[call site]
05340
strncmp
[call site]
05341
strncmp
[call site]
05342
bcf_dec_size
[function]
[call site]
05343
bcf_hdr_id2int
[function]
[call site]
05344
bcf_get_info
[function]
[call site]
05345
bcf_hdr_id2int
[function]
[call site]
05346
bcf_get_info_id
[function]
[call site]
05347
bcf_unpack
[function]
[call site]
05348
bcf_fmt_sized_array
[function]
[call site]
05349
bcf_dec_size
[function]
[call site]
05350
bcf_fmt_array
[function]
[call site]
05351
kputc_
[function]
[call site]
05352
memchr
[call site]
05353
kputsn
[function]
[call site]
05354
kputc
[function]
[call site]
05355
le_to_i8
[function]
[call site]
05356
kputc_
[function]
[call site]
05357
kputc
[function]
[call site]
05358
kputw
[function]
[call site]
05359
le_to_i16
[function]
[call site]
05360
kputc_
[function]
[call site]
05361
kputc
[function]
[call site]
05362
kputw
[function]
[call site]
05363
le_to_i32
[function]
[call site]
05364
kputc_
[function]
[call site]
05365
kputc
[function]
[call site]
05366
kputw
[function]
[call site]
05367
le_to_u32
[function]
[call site]
05368
kputc_
[function]
[call site]
05369
kputc
[function]
[call site]
05370
le_to_float
[function]
[call site]
05371
kputd
[function]
[call site]
05372
hts_log
[function]
[call site]
05373
exit
[call site]
05374
kputc_
[function]
[call site]
05375
hts_realloc_or_die
[function]
[call site]
05376
bcf_fmt_sized_array
[function]
[call site]
05377
kputc_
[function]
[call site]
05378
bcf_dec_size
[function]
[call site]
05379
hts_realloc_or_die
[function]
[call site]
05380
bcf_dec_int1
[function]
[call site]
05381
hts_realloc_or_die
[function]
[call site]
05382
bcf_unpack_info_core1
[function]
[call site]
05383
bcf_dec_typed_int1
[function]
[call site]
05384
bcf_dec_size
[function]
[call site]
05385
le_to_i16
[function]
[call site]
05386
le_to_i32
[function]
[call site]
05387
le_to_float
[function]
[call site]
05388
le_to_i64
[function]
[call site]
05389
hts_realloc_or_die
[function]
[call site]
05390
bcf_unpack_fmt_core1
[function]
[call site]
05391
bcf_dec_typed_int1
[function]
[call site]
05392
bcf_dec_size
[function]
[call site]
05393
bcf_get_info
[function]
[call site]
05394
bcf_dec_typed_int1
[function]
[call site]
05395
bcf_unpack_info_core1
[function]
[call site]
05396
bcf_unpack_info_core1
[function]
[call site]
05397
bcf_dec_size
[function]
[call site]
05398
bcf_hdr_id2int
[function]
[call site]
05399
bcf_get_fmt
[function]
[call site]
05400
bcf_hdr_id2int
[function]
[call site]
05401
bcf_get_fmt_id
[function]
[call site]
05402
bcf_unpack
[function]
[call site]
05403
bcf_dec_typed_int1
[function]
[call site]
05404
bcf_unpack_fmt_core1
[function]
[call site]
05405
bcf_dec_size
[function]
[call site]
05406
le_to_i8
[function]
[call site]
05407
le_to_i16
[function]
[call site]
05408
le_to_i32
[function]
[call site]
05409
le_to_i64
[function]
[call site]
05410
le_to_i8
[function]
[call site]
05411
le_to_i16
[function]
[call site]
05412
le_to_i32
[function]
[call site]
05413
le_to_i64
[function]
[call site]
05414
bgzf_get_private_data
[function]
[call site]
05415
__assert_fail
[call site]
05416
bcf_read1_core
[function]
[call site]
05417
bgzf_read
[function]
[call site]
05418
bcf_clear
[function]
[call site]
05419
le_to_u32
[function]
[call site]
05420
le_to_u32
[function]
[call site]
05421
ks_resize
[function]
[call site]
05422
ks_resize
[function]
[call site]
05423
le_to_i32
[function]
[call site]
05424
le_to_u32
[function]
[call site]
05425
le_to_i32
[function]
[call site]
05426
le_to_float
[function]
[call site]
05427
le_to_u16
[function]
[call site]
05428
le_to_u16
[function]
[call site]
05429
le_to_u32
[function]
[call site]
05430
bgzf_read
[function]
[call site]
05431
bgzf_read
[function]
[call site]
05432
bcf_record_check
[function]
[call site]
05433
bcf_get_version
[function]
[call site]
05434
bcf_hdr_id2int
[function]
[call site]
05435
hts_log
[function]
[call site]
05436
bcf_dec_size_safe
[function]
[call site]
05437
bcf_dec_typed_int1_safe
[function]
[call site]
05438
le_to_i16
[function]
[call site]
05439
le_to_i32
[function]
[call site]
05440
bcf_seqname_safe
[function]
[call site]
05441
get_type_name
[function]
[call site]
05442
hts_log
[function]
[call site]
05443
bcf_seqname_safe
[function]
[call site]
05444
hts_log
[function]
[call site]
05445
bcf_dec_size_safe
[function]
[call site]
05446
bcf_seqname_safe
[function]
[call site]
05447
get_type_name
[function]
[call site]
05448
hts_log
[function]
[call site]
05449
bcf_dec_size_safe
[function]
[call site]
05450
bcf_seqname_safe
[function]
[call site]
05451
get_type_name
[function]
[call site]
05452
hts_log
[function]
[call site]
05453
bcf_dec_int1
[function]
[call site]
05454
bcf_seqname_safe
[function]
[call site]
05455
hts_log
[function]
[call site]
05456
bcf_dec_typed_int1_safe
[function]
[call site]
05457
bcf_seqname_safe
[function]
[call site]
05458
hts_log
[function]
[call site]
05459
bcf_dec_size_safe
[function]
[call site]
05460
bcf_seqname_safe
[function]
[call site]
05461
get_type_name
[function]
[call site]
05462
hts_log
[function]
[call site]
05463
bcf_dec_typed_int1_safe
[function]
[call site]
05464
bcf_record_check_err
[function]
[call site]
05465
bcf_seqname_safe
[function]
[call site]
05466
hts_log
[function]
[call site]
05467
bcf_dec_size_safe
[function]
[call site]
05468
bcf_record_check_err
[function]
[call site]
05469
updatephasing
[function]
[call site]
05470
bcf_seqname_safe
[function]
[call site]
05471
hts_log
[function]
[call site]
05472
get_rlen
[function]
[call site]
05473
bcf_seqname_safe
[function]
[call site]
05474
hts_log
[function]
[call site]
05475
bcf_seqname_safe
[function]
[call site]
05476
hts_log
[function]
[call site]
05477
bcf_subset_format
[function]
[call site]
05478
hts_realloc_or_die
[function]
[call site]
05479
bcf_unpack_fmt_core1
[function]
[call site]
05480
bcf_write
[function]
[call site]
05481
bcf_hdr_sync
[function]
[call site]
05482
bcf_seqname_safe
[function]
[call site]
05483
hts_log
[function]
[call site]
05484
vcf_write
[function]
[call site]
05485
vcf_format
[function]
[call site]
05486
bcf_seqname
[function]
[call site]
05487
hts_log
[function]
[call site]
05488
__errno_location
[call site]
05489
bcf_unpack
[function]
[call site]
05490
get_hdr_aux
[function]
[call site]
05491
calloc
[call site]
05492
kputs
[function]
[call site]
05493
kputll
[function]
[call site]
05494
kputc_
[function]
[call site]
05495
kputs
[function]
[call site]
05496
kputc_
[function]
[call site]
05497
kputs
[function]
[call site]
05498
kputc_
[function]
[call site]
05499
kputc_
[function]
[call site]
05500
kputs
[function]
[call site]
05501
kputc_
[function]
[call site]
05502
bcf_float_is_missing
[function]
[call site]
05503
kputd
[function]
[call site]
05504
kputc_
[function]
[call site]
05505
bcf_seqname_safe
[function]
[call site]
05506
hts_log
[function]
[call site]
05507
__errno_location
[call site]
05508
kputc_
[function]
[call site]
05509
strlen
[call site]
05510
kputsn
[function]
[call site]
05511
kputc_
[function]
[call site]
05512
kputc_
[function]
[call site]
05513
bcf_dec_typed_int1
[function]
[call site]
05514
bcf_dec_size
[function]
[call site]
05515
bcf_seqname_safe
[function]
[call site]
05516
hts_log
[function]
[call site]
05517
__errno_location
[call site]
05518
strlen
[call site]
05519
ks_resize
[function]
[call site]
05520
bcf_fmt_array
[function]
[call site]
05521
bcf_float_is_missing
[function]
[call site]
05522
kputc_
[function]
[call site]
05523
kputd
[function]
[call site]
05524
kputc_
[function]
[call site]
05525
kputc_
[function]
[call site]
05526
kputw
[function]
[call site]
05527
kputc_
[function]
[call site]
05528
kputll
[function]
[call site]
05529
bcf_seqname_safe
[function]
[call site]
05530
hts_log
[function]
[call site]
05531
__errno_location
[call site]
05532
kputc_
[function]
[call site]
05533
kputc_
[function]
[call site]
05534
hts_malloc_p
[function]
[call site]
05535
bcf_dec_typed_int1
[function]
[call site]
05536
bcf_dec_size
[function]
[call site]
05537
kputc_
[function]
[call site]
05538
bcf_seqname_safe
[function]
[call site]
05539
hts_log
[function]
[call site]
05540
__errno_location
[call site]
05541
strlen
[call site]
05542
kputsn
[function]
[call site]
05543
kputsn
[function]
[call site]
05544
kputc_
[function]
[call site]
05545
kputc_
[function]
[call site]
05546
bcf_format_gt_v2
[function]
[call site]
05547
le_to_i8
[function]
[call site]
05548
kputc
[function]
[call site]
05549
kputw
[function]
[call site]
05550
le_to_i16
[function]
[call site]
05551
kputc
[function]
[call site]
05552
kputw
[function]
[call site]
05553
le_to_i32
[function]
[call site]
05554
kputc
[function]
[call site]
05555
kputw
[function]
[call site]
05556
kputc
[function]
[call site]
05557
hts_log
[function]
[call site]
05558
get_hdr_aux
[function]
[call site]
05559
kinsert_char
[function]
[call site]
05560
ks_resize
[function]
[call site]
05561
kinsert_char
[function]
[call site]
05562
kinsert_char
[function]
[call site]
05563
hts_log
[function]
[call site]
05564
__errno_location
[call site]
05565
bcf_fmt_array1
[function]
[call site]
05566
kputc_
[function]
[call site]
05567
kputc_
[function]
[call site]
05568
kputw
[function]
[call site]
05569
le_to_i16
[function]
[call site]
05570
kputc_
[function]
[call site]
05571
kputw
[function]
[call site]
05572
le_to_i32
[function]
[call site]
05573
kputc_
[function]
[call site]
05574
kputw
[function]
[call site]
05575
le_to_u32
[function]
[call site]
05576
kputc_
[function]
[call site]
05577
le_to_float
[function]
[call site]
05578
kputd
[function]
[call site]
05579
hts_log
[function]
[call site]
05580
bcf_fmt_array
[function]
[call site]
05581
kputc_
[function]
[call site]
05582
bcf_fmt_array1
[function]
[call site]
05583
bcf_fmt_array
[function]
[call site]
05584
kputc_
[function]
[call site]
05585
kputsn
[function]
[call site]
05586
kputc
[function]
[call site]
05587
bgzf_flush_try
[function]
[call site]
05588
hts_idx_amend_last
[function]
[call site]
05589
bgzf_write
[function]
[call site]
05590
hwrite
[function]
[call site]
05591
bcf_seqname_safe
[function]
[call site]
05592
hts_idx_tbi_name
[function]
[call site]
05593
strlen
[call site]
05594
hts_realloc_ps
[function]
[call site]
05595
strcpy
[call site]
05596
le_to_u32
[function]
[call site]
05597
u32_to_le
[function]
[call site]
05598
bgzf_idx_push
[function]
[call site]
05599
bcf_strerror
[function]
[call site]
05600
add_desc_to_buffer
[function]
[call site]
05601
add_desc_to_buffer
[function]
[call site]
05605
bcf_seqname_safe
[function]
[call site]
05606
bcf1_sync
[function]
[call site]
05607
bcf1_sync_id
[function]
[call site]
05608
strcmp
[call site]
05609
strlen
[call site]
05610
bcf_enc_vchar
[function]
[call site]
05611
bcf_enc_size
[function]
[call site]
05612
bcf1_sync_alleles
[function]
[call site]
05613
bcf1_sync_filter
[function]
[call site]
05617
bcf_enc_vint
[function]
[call site]
05618
bcf_enc_vint
[function]
[call site]
05619
bcf1_sync_info
[function]
[call site]
05620
kputsn_
[function]
[call site]
05621
bcf_unpack
[function]
[call site]
05622
bcf1_sync_id
[function]
[call site]
05623
kputsn_
[function]
[call site]
05624
bcf1_sync_alleles
[function]
[call site]
05625
kputsn_
[function]
[call site]
05626
strlen
[call site]
05627
bcf1_sync_filter
[function]
[call site]
05628
kputsn_
[function]
[call site]
05629
bcf_enc_vint
[function]
[call site]
05630
bcf1_sync_info
[function]
[call site]
05631
kputsn_
[function]
[call site]
05632
kputsn_
[function]
[call site]
05633
bcf_seqname_safe
[function]
[call site]
05634
u32_to_le
[function]
[call site]
05635
u32_to_le
[function]
[call site]
05636
i32_to_le
[function]
[call site]
05637
u32_to_le
[function]
[call site]
05638
u32_to_le
[function]
[call site]
05639
float_to_le
[function]
[call site]
05640
u16_to_le
[function]
[call site]
05641
u16_to_le
[function]
[call site]
05642
u32_to_le
[function]
[call site]
05643
bgzf_write
[function]
[call site]
05644
bgzf_write
[function]
[call site]
05645
bgzf_write
[function]
[call site]
05646
bgzf_idx_push
[function]
[call site]
05647
bcf_destroy
[function]
[call site]
05648
bcf_empty
[function]
[call site]
05649
bcf_clear
[function]
[call site]
05650
bcf_hdr_destroy
[function]
[call site]
05651
hts_close_or_abort
[function]
[call site]
05652
hts_close
[function]
[call site]
05653
view_vcf
[function]
[call site]
05654