The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 234 | 4117 | hts_str2dbl | call site: 04117 | bam_sym_lookup |
| 142 | 1590 | hts_hopen | call site: 01590 | hts_process_opts |
| 114 | 4832 | idx_find_and_load | call site: 04832 | hts_idx_load3 |
| 104 | 1349 | bgzf_read_block | call site: 01349 | bgzf_index_dump |
| 101 | 3067 | ks_free | call site: 03067 | cram_get_ref |
| 79 | 2580 | zlib_mem_deflate | call site: 02580 | fqz_compress |
| 69 | 1519 | refs2id | call site: 01519 | hts_tpool_init |
| 67 | 2732 | rans_compress_to_4x16 | call site: 02732 | arith_compress_to |
| 67 | 3996 | hts_realloc_ps | call site: 03996 | sam_parse_worker |
| 64 | 4978 | idx_find_and_load | call site: 04978 | hts_idx_load3 |
| 63 | 1832 | sam_format1_append | call site: 01832 | hts_set_opt |
| 52 | 4531 | sam_write1 | call site: 04531 | fastq_format1 |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
realloc
[call site]
00024
__ac_FNV1a_hash_string
[function]
[call site]
00025
strcmp
[call site]
00026
__errno_location
[call site]
00027
strerror
[call site]
00028
hts_log
[function]
[call site]
00029
priority
[function]
[call site]
00030
hfile_add_scheme_handler
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
init_add_plugin
[function]
[call site]
00033
hts_log
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hfile_plugin_init_mem
[function]
[call site]
00037
hfile_add_scheme_handler
[function]
[call site]
00038
init_add_plugin
[function]
[call site]
00039
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00040
hfile_add_scheme_handler
[function]
[call site]
00041
init_add_plugin
[function]
[call site]
00042
hfile_plugin_init_libcurl
[function]
[call site]
00043
hts_version
[function]
[call site]
00044
curl_global_init
[call site]
00045
easy_errno
[function]
[call site]
00046
curl_easy_getinfo
[call site]
00047
curl_easy_getinfo
[call site]
00048
http_status_errno
[function]
[call site]
00049
curl_easy_strerror
[call site]
00050
hts_log
[function]
[call site]
00051
__errno_location
[call site]
00052
curl_share_init
[call site]
00053
curl_global_cleanup
[call site]
00054
__errno_location
[call site]
00055
curl_share_setopt
[call site]
00056
share_lock
[function]
[call site]
00057
pthread_mutex_lock
[call site]
00058
curl_share_setopt
[call site]
00059
share_unlock
[function]
[call site]
00060
pthread_mutex_unlock
[call site]
00061
curl_share_setopt
[call site]
00062
curl_share_cleanup
[call site]
00063
curl_global_cleanup
[call site]
00064
__errno_location
[call site]
00065
getenv
[call site]
00066
strdup
[call site]
00067
kh_init_auth_map
[function]
[call site]
00068
calloc
[call site]
00069
__errno_location
[call site]
00070
kh_destroy_auth_map
[function]
[call site]
00071
curl_share_cleanup
[call site]
00072
curl_global_cleanup
[call site]
00073
__errno_location
[call site]
00074
getenv
[call site]
00075
strcmp
[call site]
00076
getenv
[call site]
00077
atoi
[call site]
00078
getenv
[call site]
00079
atol
[call site]
00080
getenv
[call site]
00081
atol
[call site]
00082
getenv
[call site]
00083
atol
[call site]
00084
getenv
[call site]
00085
atol
[call site]
00086
curl_version_info
[call site]
00087
ksprintf
[function]
[call site]
00088
kvsprintf
[function]
[call site]
00089
kputd
[function]
[call site]
00090
kputsn
[function]
[call site]
00091
__errno_location
[call site]
00092
ks_resize
[function]
[call site]
00093
realloc
[call site]
00094
kputsn
[function]
[call site]
00095
kputc
[function]
[call site]
00096
ks_resize
[function]
[call site]
00097
ks_resize
[function]
[call site]
00098
snprintf
[call site]
00099
kputsn
[function]
[call site]
00100
vsnprintf
[call site]
00101
ks_resize
[function]
[call site]
00102
vsnprintf
[call site]
00103
hfile_add_scheme_handler
[function]
[call site]
00104
init_add_plugin
[function]
[call site]
00105
hfile_plugin_init_gcs
[function]
[call site]
00106
hfile_add_scheme_handler
[function]
[call site]
00107
hfile_add_scheme_handler
[function]
[call site]
00108
hfile_add_scheme_handler
[function]
[call site]
00109
init_add_plugin
[function]
[call site]
00110
hfile_plugin_init_s3
[function]
[call site]
00111
hts_version
[function]
[call site]
00112
curl_global_init
[call site]
00113
curl_share_init
[call site]
00114
curl_global_cleanup
[call site]
00115
__errno_location
[call site]
00116
curl_share_setopt
[call site]
00117
share_lock
[function]
[call site]
00118
pthread_mutex_lock
[call site]
00119
curl_share_setopt
[call site]
00120
share_unlock
[function]
[call site]
00121
pthread_mutex_unlock
[call site]
00122
curl_share_setopt
[call site]
00123
curl_share_cleanup
[call site]
00124
curl_global_cleanup
[call site]
00125
__errno_location
[call site]
00126
curl_version_info
[call site]
00127
ksprintf
[function]
[call site]
00128
hfile_add_scheme_handler
[function]
[call site]
00129
hfile_add_scheme_handler
[function]
[call site]
00130
hfile_add_scheme_handler
[function]
[call site]
00131
atexit
[call site]
00132
hfile_exit
[function]
[call site]
00133
hfile_shutdown
[function]
[call site]
00134
pthread_mutex_lock
[call site]
00135
kh_destroy_scheme_string
[function]
[call site]
00136
pthread_mutex_unlock
[call site]
00137
pthread_mutex_destroy
[call site]
00138
pthread_mutex_unlock
[call site]
00139
pthread_mutex_unlock
[call site]
00140
kh_get_scheme_string
[function]
[call site]
00141
strchr
[call site]
00142
strcmp
[call site]
00143
hopen_fd_stdinout
[function]
[call site]
00144
strchr
[call site]
00145
snprintf
[call site]
00146
hdopen
[function]
[call site]
00147
blksize
[function]
[call site]
00148
fstat
[call site]
00149
hfile_init
[function]
[call site]
00150
strchr
[call site]
00151
posix_memalign
[call site]
00152
strchr
[call site]
00153
hfile_destroy
[function]
[call site]
00154
__errno_location
[call site]
00155
__errno_location
[call site]
00156
strchr
[call site]
00157
strchr
[call site]
00158
hopen_fd
[function]
[call site]
00159
hfile_oflags
[function]
[call site]
00160
open
[call site]
00161
blksize
[function]
[call site]
00162
hfile_init
[function]
[call site]
00163
__errno_location
[call site]
00164
close
[call site]
00165
hfile_destroy
[function]
[call site]
00166
hts_hopen
[function]
[call site]
00167
calloc
[call site]
00168
strdup
[call site]
00169
ed_is_big
[function]
[call site]
00170
strchr
[call site]
00171
strncpy
[call site]
00172
strncpy
[call site]
00173
strchr
[call site]
00174
hts_detect_format2
[function]
[call site]
00175
hpeek
[function]
[call site]
00176
refill_buffer
[function]
[call site]
00177
__errno_location
[call site]
00178
memcmp
[call site]
00179
memcmp
[call site]
00180
decompress_peek_gz
[function]
[call site]
00181
hpeek
[function]
[call site]
00182
inflateInit2_
[call site]
00183
inflate
[call site]
00184
inflateReset
[call site]
00185
inflateEnd
[call site]
00186
memcmp
[call site]
00187
memcmp
[call site]
00188
memcmp
[call site]
00189
memcmp
[call site]
00190
decompress_peek_xz
[function]
[call site]
00191
hpeek
[function]
[call site]
00192
lzma_easy_decoder_memusage
[call site]
00193
lzma_stream_decoder
[call site]
00194
lzma_code
[call site]
00195
lzma_end
[call site]
00196
lzma_end
[call site]
00197
memcmp
[call site]
00198
hpeek
[function]
[call site]
00199
strcmp
[call site]
00200
find_file_extension
[function]
[call site]
00201
strstr
[call site]
00202
strlen
[call site]
00203
tolower_c
[function]
[call site]
00204
memcmp
[call site]
00205
memcmp
[call site]
00206
memcmp
[call site]
00207
memcmp
[call site]
00208
memcmp
[call site]
00209
memcmp
[call site]
00210
memcmp
[call site]
00211
strcmp
[call site]
00212
memcmp
[call site]
00213
parse_version
[function]
[call site]
00214
isdigit_c
[function]
[call site]
00215
__ctype_b_loc
[call site]
00216
isdigit_c
[function]
[call site]
00217
memcmp
[call site]
00218
memcmp
[call site]
00219
memcmp
[call site]
00220
memcmp
[call site]
00221
parse_version
[function]
[call site]
00222
memcmp
[call site]
00223
cmp_nonblank
[function]
[call site]
00224
isspace_c
[function]
[call site]
00225
__ctype_b_loc
[call site]
00226
memcmp
[call site]
00227
is_fastaq
[function]
[call site]
00228
is_fastaq
[function]
[call site]
00232
parse_tabbed_text
[function]
[call site]
00233
isdigit_c
[function]
[call site]
00234
strchr
[call site]
00235
isdigit_c
[function]
[call site]
00236
colmatch
[function]
[call site]
00237
colmatch
[function]
[call site]
00238
strstr
[call site]
00239
colmatch
[function]
[call site]
00240
strstr
[call site]
00241
colmatch
[function]
[call site]
00242
colmatch
[function]
[call site]
00243
is_text_only
[function]
[call site]
00244
__errno_location
[call site]
00245
hopen_htsget_redirect
[function]
[call site]
00246
hfile_init
[function]
[call site]
00247
parse_ga4gh_redirect_json
[function]
[call site]
00248
hts_json_fnext
[function]
[call site]
00249
hgetc
[function]
[call site]
00250
hgetc2
[function]
[call site]
00251
refill_buffer
[function]
[call site]
00252
fscan_string
[function]
[call site]
00253
hgetc
[function]
[call site]
00254
hgetc
[function]
[call site]
00255
kputc
[function]
[call site]
00256
kputc
[function]
[call site]
00257
kputc
[function]
[call site]
00258
kputc
[function]
[call site]
00259
kputc
[function]
[call site]
00260
kputc
[function]
[call site]
00261
hgetc
[function]
[call site]
00262
dehex
[function]
[call site]
00263
hgetc
[function]
[call site]
00264
dehex
[function]
[call site]
00265
hgetc
[function]
[call site]
00266
dehex
[function]
[call site]
00267
hgetc
[function]
[call site]
00268
dehex
[function]
[call site]
00269
encode_utf8
[function]
[call site]
00270
kputsn
[function]
[call site]
00271
kputc
[function]
[call site]
00272
kputsn
[function]
[call site]
00273
kputc
[function]
[call site]
00274
hpeek
[function]
[call site]
00275
strchr
[call site]
00276
hgetc
[function]
[call site]
00277
kputc
[function]
[call site]
00278
token_type
[function]
[call site]
00279
hts_json_fnext
[function]
[call site]
00283
strcmp
[call site]
00284
parse_ga4gh_body_json
[function]
[call site]
00285
hts_json_fnext
[function]
[call site]
00286
hts_json_fnext
[function]
[call site]
00287
strcmp
[call site]
00288
hts_json_fnext
[function]
[call site]
00289
hts_json_fnext
[function]
[call site]
00290
hts_realloc_or_die
[function]
[call site]
00291
__errno_location
[call site]
00292
realloc
[call site]
00293
__errno_location
[call site]
00294
strerror
[call site]
00295
hts_log
[function]
[call site]
00296
exit
[call site]
00297
hts_json_fnext
[function]
[call site]
00298
strcmp
[call site]
00299
hts_json_fnext
[function]
[call site]
00300
ks_release
[function]
[call site]
00301
strcmp
[call site]
00302
hts_json_fnext
[function]
[call site]
00303
hts_json_fnext
[function]
[call site]
00304
hts_json_fnext
[function]
[call site]
00305
kputs
[function]
[call site]
00306
__errno_location
[call site]
00307
strlen
[call site]
00308
kputsn
[function]
[call site]
00309
kputs
[function]
[call site]
00310
hts_realloc_or_die
[function]
[call site]
00311
ks_release
[function]
[call site]
00312
hts_json_fskip_value
[function]
[call site]
00313
skip_value
[function]
[call site]
00314
fnext
[function]
[call site]
00315
hts_json_fnext
[function]
[call site]
00316
strcmp
[call site]
00317
hts_json_fnext
[function]
[call site]
00318
hts_log
[function]
[call site]
00319
hts_json_fskip_value
[function]
[call site]
00320
hts_json_fnext
[function]
[call site]
00321
free_all_parts
[function]
[call site]
00322
free_part
[function]
[call site]
00323
hfile_destroy
[function]
[call site]
00324
__errno_location
[call site]
00325
hclose_abruptly
[function]
[call site]
00326
__errno_location
[call site]
00327
hfile_destroy
[function]
[call site]
00328
__errno_location
[call site]
00329
hts_crypt4gh_redirect
[function]
[call site]
00330
strlen
[call site]
00331
snprintf
[call site]
00332
strchr
[call site]
00333
snprintf
[call site]
00334
hopen
[function]
[call site]
00335
hts_detect_format2
[function]
[call site]
00336
strchr
[call site]
00337
strchr
[call site]
00338
strchr
[call site]
00339
strchr
[call site]
00340
strchr
[call site]
00341
strchr
[call site]
00342
strchr
[call site]
00343
strchr
[call site]
00344
abort
[call site]
00345
format_category
[function]
[call site]
00346
__errno_location
[call site]
00347
bgzf_hopen
[function]
[call site]
00348
strchr
[call site]
00349
bgzf_read_init
[function]
[call site]
00350
hpeek
[function]
[call site]
00351
calloc
[call site]
00352
hts_malloc_p
[function]
[call site]
00353
hts_prod_sat2
[function]
[call site]
00354
hts_malloc
[function]
[call site]
00355
__errno_location
[call site]
00356
memcmp
[call site]
00357
memcmp
[call site]
00358
hts_log
[function]
[call site]
00359
razf_info
[function]
[call site]
00360
strcmp
[call site]
00361
hseek
[function]
[call site]
00362
writebuffer_is_nonempty
[function]
[call site]
00363
flush_buffer
[function]
[call site]
00364
__errno_location
[call site]
00365
htell
[function]
[call site]
00366
__errno_location
[call site]
00367
__errno_location
[call site]
00368
__errno_location
[call site]
00369
hread
[function]
[call site]
00370
hread2
[function]
[call site]
00371
__errno_location
[call site]
00372
refill_buffer
[function]
[call site]
00373
ed_is_big
[function]
[call site]
00374
ed_swap_8p
[function]
[call site]
00375
ed_swap_8
[function]
[call site]
00376
hts_log
[function]
[call site]
00377
hts_log
[function]
[call site]
00378
__errno_location
[call site]
00379
kh_init_bgzf_cache
[function]
[call site]
00380
calloc
[call site]
00381
strchr
[call site]
00382
bgzf_write_init
[function]
[call site]
00383
calloc
[call site]
00384
mode2level
[function]
[call site]
00385
strchr
[call site]
00386
hts_malloc_p
[function]
[call site]
00387
strchr
[call site]
00388
calloc
[call site]
00389
deflateInit2_
[call site]
00390
bgzf_zerr
[function]
[call site]
00391
hts_log
[function]
[call site]
00395
__errno_location
[call site]
00396
strerror
[call site]
00397
hts_log
[function]
[call site]
00398
__errno_location
[call site]
00399
ed_is_big
[function]
[call site]
00400
cram_dopen
[function]
[call site]
00401
calloc
[call site]
00402
cram_read_file_def
[function]
[call site]
00403
hread
[function]
[call site]
00404
memcmp
[call site]
00405
hts_log
[function]
[call site]
00406
cram_init_tables
[function]
[call site]
00407
cram_init_varint
[function]
[call site]
00408
cram_read_SAM_hdr
[function]
[call site]
00409
int32_decode
[function]
[call site]
00410
hread
[function]
[call site]
00411
hread
[function]
[call site]
00412
cram_read_container
[function]
[call site]
00413
int32_decode
[function]
[call site]
00414
crc32
[call site]
00415
calloc
[call site]
00416
__errno_location
[call site]
00417
cram_free_container
[function]
[call site]
00418
cram_free_compression_header
[function]
[call site]
00419
kh_destroy_map
[function]
[call site]
00420
cram_free_block
[function]
[call site]
00421
kh_destroy_m_s2i
[function]
[call site]
00422
string_pool_destroy
[function]
[call site]
00423
cram_free_block
[function]
[call site]
00424
cram_free_slice
[function]
[call site]
00425
free_bam_list
[function]
[call site]
00426
bam_destroy1
[function]
[call site]
00427
bam_get_mempolicy
[function]
[call site]
00428
bam_get_mempolicy
[function]
[call site]
00429
bam_get_mempolicy
[function]
[call site]
00430
cram_free_block
[function]
[call site]
00431
cram_free_block
[function]
[call site]
00432
cram_free_block
[function]
[call site]
00433
cram_free_slice_header
[function]
[call site]
00434
cram_free_block
[function]
[call site]
00435
cram_free_block
[function]
[call site]
00436
cram_free_block
[function]
[call site]
00437
cram_free_block
[function]
[call site]
00438
cram_free_block
[function]
[call site]
00439
cram_free_block
[function]
[call site]
00440
string_pool_destroy
[function]
[call site]
00441
kh_destroy_m_s2i
[function]
[call site]
00442
kh_destroy_m_s2i
[function]
[call site]
00443
cram_free_slice
[function]
[call site]
00444
cram_stats_free
[function]
[call site]
00445
kh_destroy_m_i2i
[function]
[call site]
00446
cram_free_block
[function]
[call site]
00447
cram_free_block
[function]
[call site]
00448
kh_destroy_m_tagmap
[function]
[call site]
00449
free_bam_list
[function]
[call site]
00450
hts_malloc_p
[function]
[call site]
00451
hts_prod_sat2
[function]
[call site]
00452
hts_malloc
[function]
[call site]
00453
__errno_location
[call site]
00454
cram_free_container
[function]
[call site]
00455
cram_free_container
[function]
[call site]
00456
int32_decode
[function]
[call site]
00457
cram_free_container
[function]
[call site]
00458
hts_log
[function]
[call site]
00459
cram_free_container
[function]
[call site]
00460
cram_free_container
[function]
[call site]
00461
cram_read_block
[function]
[call site]
00462
hgetc
[function]
[call site]
00463
hts_log
[function]
[call site]
00464
crc32
[call site]
00465
hgetc
[function]
[call site]
00466
crc32
[call site]
00467
hread
[function]
[call site]
00468
hread
[function]
[call site]
00469
int32_decode
[function]
[call site]
00470
cram_free_container
[function]
[call site]
00471
cram_uncompress_block
[function]
[call site]
00472
crc32
[call site]
00473
hts_log
[function]
[call site]
00474
__assert_fail
[call site]
00475
zlib_mem_inflate
[function]
[call site]
00476
inflateInit2_
[call site]
00477
hts_log
[function]
[call site]
00478
inflate
[call site]
00479
hts_log
[function]
[call site]
00480
inflateEnd
[call site]
00481
realloc
[call site]
00482
inflateEnd
[call site]
00483
inflateEnd
[call site]
00484
BZ2_bzBuffToBuffDecompress
[call site]
00485
lzma_mem_inflate
[function]
[call site]
00486
lzma_easy_decoder_memusage
[call site]
00487
lzma_stream_decoder
[call site]
00488
realloc
[call site]
00489
lzma_code
[call site]
00490
hts_log
[function]
[call site]
00491
lzma_code
[call site]
00492
hts_log
[function]
[call site]
00493
realloc
[call site]
00494
lzma_end
[call site]
00495
lzma_end
[call site]
00496
rans_uncompress
[function]
[call site]
00497
rans_uncompress_O1
[function]
[call site]
00498
htscodecs_tls_calloc
[function]
[call site]
00499
htscodecs_tls_alloc
[function]
[call site]
00500
pthread_once
[call site]
00501
htscodecs_tls_init
[function]
[call site]
00502
pthread_key_create
[call site]
00503
htscodecs_tls_free_all
[function]
[call site]
00504
fprintf
[call site]
00505
strerror
[call site]
00506
fprintf
[call site]
00507
pthread_getspecific
[call site]
00508
calloc
[call site]
00509
pthread_setspecific
[call site]
00510
fprintf
[call site]
00511
calloc
[call site]
00512
RansDecSymbolInit32
[function]
[call site]
00513
__assert_fail
[call site]
00514
__assert_fail
[call site]
00515
RansDecInit
[function]
[call site]
00516
RansDecInit
[function]
[call site]
00517
RansDecInit
[function]
[call site]
00518
RansDecInit
[function]
[call site]
00519
RansDecAdvanceStep
[function]
[call site]
00520
RansDecAdvanceStep
[function]
[call site]
00521
RansDecAdvanceStep
[function]
[call site]
00522
RansDecAdvanceStep
[function]
[call site]
00523
RansDecRenorm2
[function]
[call site]
00524
RansDecRenorm2
[function]
[call site]
00525
RansDecRenormSafe
[function]
[call site]
00526
RansDecRenormSafe
[function]
[call site]
00527
RansDecRenormSafe
[function]
[call site]
00528
RansDecRenormSafe
[function]
[call site]
00529
RansDecGet
[function]
[call site]
00530
RansDecRenormSafe
[function]
[call site]
00531
htscodecs_tls_free
[function]
[call site]
00532
rans_uncompress_O0
[function]
[call site]
00536
RansDecInit
[function]
[call site]
00537
RansDecInit
[function]
[call site]
00538
RansDecInit
[function]
[call site]
00539
RansDecInit
[function]
[call site]
00540
RansDecRenorm2
[function]
[call site]
00541
RansDecRenorm2
[function]
[call site]
00542
RansDecRenormSafe
[function]
[call site]
00543
RansDecRenormSafe
[function]
[call site]
00544
RansDecRenormSafe
[function]
[call site]
00545
RansDecRenormSafe
[function]
[call site]
00546
fqz_decompress
[function]
[call site]
00547
uncompress_block_fqz2f
[function]
[call site]
00548
var_get_u32
[function]
[call site]
00549
fqz_read_parameters
[function]
[call site]
00550
read_array
[function]
[call site]
00551
fqz_read_parameters1
[function]
[call site]
00552
read_array
[function]
[call site]
00553
read_array
[function]
[call site]
00554
read_array
[function]
[call site]
00555
fqz_free_parameters
[function]
[call site]
00556
fqz_create_models
[function]
[call site]
00557
htscodecs_tls_alloc
[function]
[call site]
00558
SIMPLE_MODEL256_init
[function]
[call site]
00559
SIMPLE_MODEL256_init
[function]
[call site]
00560
SIMPLE_MODEL2_init
[function]
[call site]
00561
SIMPLE_MODEL2_init
[function]
[call site]
00562
SIMPLE_MODEL256_init
[function]
[call site]
00563
RC_SetInput
[function]
[call site]
00564
RC_StartDecode
[function]
[call site]
00565
realloc
[call site]
00566
realloc
[call site]
00567
decompress_new_read
[function]
[call site]
00568
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00569
RC_GetFreq
[function]
[call site]
00570
RC_Decode
[function]
[call site]
00571
SIMPLE_MODEL256_normalize
[function]
[call site]
00572
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00573
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00574
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00575
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00576
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00577
SIMPLE_MODEL2_normalize
[function]
[call site]
00578
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00579
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00580
fqz_update_ctx
[function]
[call site]
00581
realloc
[call site]
00582
realloc
[call site]
00583
RC_FinishDecode
[function]
[call site]
00584
fqz_destroy_models
[function]
[call site]
00585
htscodecs_tls_free
[function]
[call site]
00586
fqz_free_parameters
[function]
[call site]
00587
fqz_destroy_models
[function]
[call site]
00588
fqz_free_parameters
[function]
[call site]
00589
rans_uncompress_4x16
[function]
[call site]
00590
rans_uncompress_to_4x16
[function]
[call site]
00591
var_get_u32
[function]
[call site]
00592
var_get_u32
[function]
[call site]
00593
rans_uncompress_to_4x16
[function]
[call site]
00594
unstripe
[function]
[call site]
00595
var_get_u32
[function]
[call site]
00596
hts_unpack_meta
[function]
[call site]
00597
var_get_u32
[function]
[call site]
00598
var_get_u32
[function]
[call site]
00599
var_get_u32
[function]
[call site]
00600
var_get_u32
[function]
[call site]
00601
rans_dec_func
[function]
[call site]
00602
pthread_once
[call site]
00603
htscodecs_tls_cpu_init
[function]
[call site]
00604
__get_cpuid_max
[function]
[call site]
00605
not_ancient_darwin
[function]
[call site]
00606
strerror
[call site]
00607
fprintf
[call site]
00608
fprintf
[call site]
00609
rans_dec_func
[function]
[call site]
00610
hts_rle_decode
[function]
[call site]
00611
var_get_u32
[function]
[call site]
00612
hts_unpack
[function]
[call site]
00613
arith_uncompress_to
[function]
[call site]
00614
var_get_u32
[function]
[call site]
00615
var_get_u32
[function]
[call site]
00616
arith_uncompress_to
[function]
[call site]
00617
unstripe
[function]
[call site]
00618
var_get_u32
[function]
[call site]
00619
hts_unpack_meta
[function]
[call site]
00620
var_get_u32
[function]
[call site]
00621
BZ2_bzBuffToBuffDecompress
[call site]
00622
arith_uncompress_O1_RLE
[function]
[call site]
00623
htscodecs_tls_alloc
[function]
[call site]
00624
SIMPLE_MODEL256_init
[function]
[call site]
00625
htscodecs_tls_alloc
[function]
[call site]
00626
htscodecs_tls_free
[function]
[call site]
00627
SIMPLE_MODEL258_init
[function]
[call site]
00628
RC_SetInput
[function]
[call site]
00629
RC_StartDecode
[function]
[call site]
00630
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00631
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00632
SIMPLE_MODEL258_normalize
[function]
[call site]
00633
RC_FinishDecode
[function]
[call site]
00634
htscodecs_tls_free
[function]
[call site]
00635
htscodecs_tls_free
[function]
[call site]
00636
htscodecs_tls_free
[function]
[call site]
00637
htscodecs_tls_free
[function]
[call site]
00638
arith_uncompress_O0_RLE
[function]
[call site]
00639
SIMPLE_MODEL256_init
[function]
[call site]
00640
htscodecs_tls_alloc
[function]
[call site]
00641
SIMPLE_MODEL258_init
[function]
[call site]
00642
RC_SetInput
[function]
[call site]
00643
RC_StartDecode
[function]
[call site]
00644
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00645
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00646
RC_FinishDecode
[function]
[call site]
00647
htscodecs_tls_free
[function]
[call site]
00648
htscodecs_tls_free
[function]
[call site]
00649
arith_uncompress_O1
[function]
[call site]
00650
htscodecs_tls_alloc
[function]
[call site]
00651
SIMPLE_MODEL256_init
[function]
[call site]
00652
RC_SetInput
[function]
[call site]
00653
RC_StartDecode
[function]
[call site]
00654
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00655
RC_FinishDecode
[function]
[call site]
00656
htscodecs_tls_free
[function]
[call site]
00657
htscodecs_tls_free
[function]
[call site]
00658
arith_uncompress_O0
[function]
[call site]
00659
SIMPLE_MODEL256_init
[function]
[call site]
00660
RC_SetInput
[function]
[call site]
00661
RC_StartDecode
[function]
[call site]
00662
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00663
RC_FinishDecode
[function]
[call site]
00664
hts_unpack
[function]
[call site]
00665
tok3_decode_names
[function]
[call site]
00666
create_context
[function]
[call site]
00667
fprintf
[call site]
00668
htscodecs_tls_alloc
[function]
[call site]
00669
uncompressed_size
[function]
[call site]
00670
var_get_u32
[function]
[call site]
00671
var_get_u32
[function]
[call site]
00672
uncompress
[function]
[call site]
00673
var_get_u32
[function]
[call site]
00674
arith_decode
[function]
[call site]
00675
var_get_u32
[function]
[call site]
00676
arith_uncompress_to
[function]
[call site]
00677
rans_decode
[function]
[call site]
00678
var_get_u32
[function]
[call site]
00679
rans_uncompress_to_4x16
[function]
[call site]
00680
decode_name
[function]
[call site]
00681
decode_token_type
[function]
[call site]
00682
decode_token_int
[function]
[call site]
00683
strlen
[call site]
00684
strcpy
[call site]
00685
strlen
[call site]
00686
decode_token_type
[function]
[call site]
00687
decode_token_char
[function]
[call site]
00688
decode_token_alpha
[function]
[call site]
00689
decode_token_int1
[function]
[call site]
00690
decode_token_int
[function]
[call site]
00691
append_uint32_fixed
[function]
[call site]
00692
decode_token_int1
[function]
[call site]
00693
append_uint32_fixed
[function]
[call site]
00694
decode_token_int
[function]
[call site]
00695
append_uint32_var
[function]
[call site]
00696
decode_token_int1
[function]
[call site]
00697
append_uint32_var
[function]
[call site]
00698
append_uint32_var
[function]
[call site]
00699
append_uint32_fixed
[function]
[call site]
00700
realloc
[call site]
00701
free_context
[function]
[call site]
00702
pool_destroy
[function]
[call site]
00703
htscodecs_tls_free
[function]
[call site]
00704
free_context
[function]
[call site]
00705
cram_free_container
[function]
[call site]
00706
cram_free_block
[function]
[call site]
00707
int32_get_blk
[function]
[call site]
00708
cram_free_container
[function]
[call site]
00709
cram_free_block
[function]
[call site]
00710
cram_free_container
[function]
[call site]
00711
cram_free_block
[function]
[call site]
00712
cram_free_block
[function]
[call site]
00713
cram_read_block
[function]
[call site]
00714
cram_free_container
[function]
[call site]
00715
cram_free_block
[function]
[call site]
00716
cram_free_container
[function]
[call site]
00717
hread
[function]
[call site]
00718
cram_free_container
[function]
[call site]
00719
cram_free_container
[function]
[call site]
00720
sam_hdr_init
[function]
[call site]
00721
calloc
[call site]
00722
sam_hdr_add_lines
[function]
[call site]
00723
sam_hdr_fill_hrecs
[function]
[call site]
00724
sam_hrecs_new
[function]
[call site]
00725
calloc
[call site]
00726
kh_init_sam_hrecs_t
[function]
[call site]
00727
calloc
[call site]
00728
kh_init_m_s2i
[function]
[call site]
00729
calloc
[call site]
00730
kh_init_m_s2i
[function]
[call site]
00731
kh_init_m_s2i
[function]
[call site]
00732
pool_create
[function]
[call site]
00733
next_power_2
[function]
[call site]
00734
pool_create
[function]
[call site]
00735
string_pool_create
[function]
[call site]
00736
sam_hrecs_init_type_order
[function]
[call site]
00737
calloc
[call site]
00738
kh_destroy_sam_hrecs_t
[function]
[call site]
00739
pool_destroy
[function]
[call site]
00740
pool_destroy
[function]
[call site]
00741
string_pool_destroy
[function]
[call site]
00742
sam_hrecs_refs_from_targets_array
[function]
[call site]
00743
hts_log
[function]
[call site]
00744
hts_realloc_p
[function]
[call site]
00745
hts_prod_sat2
[function]
[call site]
00746
hts_realloc
[function]
[call site]
00747
__errno_location
[call site]
00748
realloc
[call site]
00749
kh_grow_to_fit_m_s2i
[function]
[call site]
00750
kh_resize_m_s2i
[function]
[call site]
00751
__ac_FNV1a_hash_string
[function]
[call site]
00752
string_dup
[function]
[call site]
00753
strlen
[call site]
00754
string_ndup
[function]
[call site]
00755
string_alloc
[function]
[call site]
00756
new_string_pool
[function]
[call site]
00757
hts_realloc_p
[function]
[call site]
00758
hts_prod_sat2
[function]
[call site]
00759
hts_realloc
[function]
[call site]
00760
hts_malloc
[function]
[call site]
00761
kh_get_s2i
[function]
[call site]
00762
__ac_FNV1a_hash_string
[function]
[call site]
00763
strcmp
[call site]
00764
kh_put_m_s2i
[function]
[call site]
00765
strcmp
[call site]
00766
hts_log
[function]
[call site]
00767
__errno_location
[call site]
00768
strerror
[call site]
00769
hts_log
[function]
[call site]
00770
kh_get_m_s2i
[function]
[call site]
00771
kh_del_m_s2i
[function]
[call site]
00772
sam_hrecs_free
[function]
[call site]
00773
kh_destroy_sam_hrecs_t
[function]
[call site]
00774
kh_destroy_m_s2i
[function]
[call site]
00775
kh_destroy_m_s2i
[function]
[call site]
00776
kh_destroy_m_s2i
[function]
[call site]
00777
pool_destroy
[function]
[call site]
00778
pool_destroy
[function]
[call site]
00779
string_pool_destroy
[function]
[call site]
00780
sam_hrecs_parse_lines
[function]
[call site]
00781
strlen
[call site]
00782
sam_hrecs_error
[function]
[call site]
00783
hts_log
[function]
[call site]
00784
sam_hrecs_parse_single_line
[function]
[call site]
00785
sam_hrecs_error
[function]
[call site]
00786
isalpha_c
[function]
[call site]
00787
__ctype_b_loc
[call site]
00788
sam_hrecs_error
[function]
[call site]
00789
TYPEKEY
[function]
[call site]
00790
pool_alloc
[function]
[call site]
00791
new_pool
[function]
[call site]
00792
hts_realloc_ps
[function]
[call site]
00793
hts_add_sat2
[function]
[call site]
00794
hts_prod_sat2
[function]
[call site]
00795
hts_realloc
[function]
[call site]
00796
hts_malloc_p
[function]
[call site]
00797
kh_put_sam_hrecs_t
[function]
[call site]
00798
kh_resize_sam_hrecs_t
[function]
[call site]
00799
realloc
[call site]
00800
TYPEKEY
[function]
[call site]
00801
parse_comment_line
[function]
[call site]
00802
sam_hrecs_error
[function]
[call site]
00803
warn_if_known_stderr
[function]
[call site]
00804
kmemmem
[function]
[call site]
00805
boyer_moore
[function]
[call site]
00806
memchr
[call site]
00807
ksBM_prep
[function]
[call site]
00808
hts_calloc_ps
[function]
[call site]
00809
hts_add_sat2
[function]
[call site]
00810
hts_calloc
[function]
[call site]
00811
__errno_location
[call site]
00812
calloc
[call site]
00813
calloc
[call site]
00814
karp_rabin
[function]
[call site]
00815
fast_exp
[function]
[call site]
00816
memcmp
[call site]
00817
known_stderr
[function]
[call site]
00818
hts_log
[function]
[call site]
00819
hts_log
[function]
[call site]
00820
kmemmem
[function]
[call site]
00821
known_stderr
[function]
[call site]
00822
kmemmem
[function]
[call site]
00823
known_stderr
[function]
[call site]
00824
pool_alloc
[function]
[call site]
00825
string_ndup
[function]
[call site]
00826
parse_noncomment_line
[function]
[call site]
00827
TYPEKEY
[function]
[call site]
00828
sam_hrecs_error
[function]
[call site]
00829
warn_if_known_stderr
[function]
[call site]
00830
sam_hrecs_error
[function]
[call site]
00831
warn_if_known_stderr
[function]
[call site]
00832
pool_alloc
[function]
[call site]
00833
string_ndup
[function]
[call site]
00834
sam_hrecs_global_list_add
[function]
[call site]
00835
TYPEKEY
[function]
[call site]
00836
__assert_fail
[call site]
00837
sam_hrecs_free_tags
[function]
[call site]
00838
sam_hrecs_free_tags
[function]
[call site]
00839
pool_free
[function]
[call site]
00840
pool_free
[function]
[call site]
00841
TYPEKEY
[function]
[call site]
00842
kh_grow_to_fit_m_s2i
[function]
[call site]
00843
hts_realloc_p
[function]
[call site]
00844
sam_hrecs_update_hashes
[function]
[call site]
00845
TYPEKEY
[function]
[call site]
00846
__assert_fail
[call site]
00847
__assert_fail
[call site]
00848
strtoll
[call site]
00849
__assert_fail
[call site]
00850
hts_log
[function]
[call site]
00851
hts_log
[function]
[call site]
00852
hts_log
[function]
[call site]
00853
kh_get_m_s2i
[function]
[call site]
00854
snprintf
[call site]
00855
sam_hrecs_update
[function]
[call site]
00856
sam_hrecs_vupdate
[function]
[call site]
00857
sam_hrecs_find_key
[function]
[call site]
00858
pool_alloc
[function]
[call site]
00859
strlen
[call site]
00860
hts_add_sat2
[function]
[call site]
00861
string_alloc
[function]
[call site]
00862
snprintf
[call site]
00863
sam_hrecs_add_ref_altnames
[function]
[call site]
00864
kstrtok
[function]
[call site]
00865
strchr
[call site]
00866
strlen
[call site]
00867
string_ndup
[function]
[call site]
00868
kh_put_m_s2i
[function]
[call site]
00869
hts_log
[function]
[call site]
00870
strcmp
[call site]
00871
sam_hrecs_add_ref_altnames
[function]
[call site]
00872
strcmp
[call site]
00873
hts_log
[function]
[call site]
00874
hts_log
[function]
[call site]
00875
hts_realloc_p
[function]
[call site]
00876
kh_put_m_s2i
[function]
[call site]
00877
sam_hrecs_add_ref_altnames
[function]
[call site]
00878
TYPEKEY
[function]
[call site]
00879
sam_hrecs_find_key
[function]
[call site]
00880
hts_log
[function]
[call site]
00881
__assert_fail
[call site]
00882
kh_get_m_s2i
[function]
[call site]
00883
__assert_fail
[call site]
00884
hts_log
[function]
[call site]
00885
hts_realloc_p
[function]
[call site]
00886
kh_put_m_s2i
[function]
[call site]
00887
TYPEKEY
[function]
[call site]
00888
hts_realloc_p
[function]
[call site]
00889
__assert_fail
[call site]
00890
hts_log
[function]
[call site]
00891
kh_get_m_s2i
[function]
[call site]
00892
kh_put_m_s2i
[function]
[call site]
00893
hts_realloc_p
[function]
[call site]
00894
sam_hrecs_free
[function]
[call site]
00895
add_stub_ref_sq_lines
[function]
[call site]
00896
snprintf
[call site]
00897
sam_hrecs_add
[function]
[call site]
00898
sam_hrecs_vadd
[function]
[call site]
00899
TYPEKEY
[function]
[call site]
00900
strncmp
[call site]
00901
sam_hrecs_find_type_id
[function]
[call site]
00902
kh_get_m_s2i
[function]
[call site]
00903
kh_get_m_s2i
[function]
[call site]
00904
kh_get_m_s2i
[function]
[call site]
00905
TYPEKEY
[function]
[call site]
00906
kh_get_sam_hrecs_t
[function]
[call site]
00907
sam_hrecs_vupdate
[function]
[call site]
00908
pool_alloc
[function]
[call site]
00909
kh_put_sam_hrecs_t
[function]
[call site]
00910
__assert_fail
[call site]
00911
sam_hrecs_global_list_add
[function]
[call site]
00912
__assert_fail
[call site]
00913
__assert_fail
[call site]
00914
__assert_fail
[call site]
00915
__assert_fail
[call site]
00916
strncmp
[call site]
00917
pool_alloc
[function]
[call site]
00918
strncmp
[call site]
00919
strlen
[call site]
00920
hts_add_sat2
[function]
[call site]
00921
string_alloc
[function]
[call site]
00922
snprintf
[call site]
00923
strlen
[call site]
00924
string_ndup
[function]
[call site]
00925
strncmp
[call site]
00926
pool_alloc
[function]
[call site]
00927
strncmp
[call site]
00928
strlen
[call site]
00929
hts_add_sat2
[function]
[call site]
00930
string_alloc
[function]
[call site]
00931
snprintf
[call site]
00932
strlen
[call site]
00933
string_ndup
[function]
[call site]
00934
TYPEKEY
[function]
[call site]
00935
sam_hrecs_update_hashes
[function]
[call site]
00936
strncmp
[call site]
00937
hts_log
[function]
[call site]
00938
sam_hrecs_free
[function]
[call site]
00939
rebuild_target_arrays
[function]
[call site]
00940
sam_hdr_update_target_arrays
[function]
[call site]
00941
hts_realloc_p
[function]
[call site]
00942
hts_realloc_p
[function]
[call site]
00943
strcmp
[call site]
00944
strdup
[call site]
00945
kh_get_s2i
[function]
[call site]
00946
kh_del_s2i
[function]
[call site]
00947
kh_init_s2i
[function]
[call site]
00948
calloc
[call site]
00949
kh_put_s2i
[function]
[call site]
00950
kh_resize_s2i
[function]
[call site]
00951
realloc
[call site]
00952
kh_get_s2i
[function]
[call site]
00953
kh_del_s2i
[function]
[call site]
00954
sam_hrecs_parse_lines
[function]
[call site]
00955
rebuild_target_arrays
[function]
[call site]
00956
redact_header_text
[function]
[call site]
00957
__assert_fail
[call site]
00958
sam_hdr_destroy
[function]
[call site]
00959
sam_hrecs_free
[function]
[call site]
00960
kh_destroy_s2i
[function]
[call site]
00961
cram_free_file_def
[function]
[call site]
00962
calloc
[call site]
00963
strncpy
[call site]
00964
cram_init_tables
[function]
[call site]
00965
strrchr
[call site]
00966
strdup
[call site]
00967
refs_create
[function]
[call site]
00968
calloc
[call site]
00969
string_pool_create
[function]
[call site]
00970
kh_init_refs
[function]
[call site]
00971
calloc
[call site]
00972
pthread_mutex_init
[call site]
00973
refs_free
[function]
[call site]
00974
string_pool_destroy
[function]
[call site]
00975
ref_entry_free_seq
[function]
[call site]
00976
mfclose
[function]
[call site]
00977
mfflush
[function]
[call site]
00978
fwrite
[call site]
00979
fflush
[call site]
00980
fseek
[call site]
00981
fwrite
[call site]
00982
fflush
[call site]
00983
ftell
[call site]
00984
fileno
[call site]
00985
ftell
[call site]
00986
ftruncate
[call site]
00987
munmap
[call site]
00988
fclose
[call site]
00989
mfdestroy
[function]
[call site]
00990
kh_destroy_refs
[function]
[call site]
00991
bgzf_close
[function]
[call site]
00992
bgzf_flush
[function]
[call site]
00993
mt_queue
[function]
[call site]
00994
pthread_mutex_lock
[call site]
00995
pool_alloc
[function]
[call site]
00996
pthread_mutex_unlock
[call site]
00997
hts_tpool_dispatch3
[function]
[call site]
00998
pthread_mutex_lock
[call site]
00999
pthread_mutex_unlock
[call site]
01000
__errno_location
[call site]
01001
pthread_mutex_unlock
[call site]
01002
pthread_cond_wait
[call site]
01003
pthread_mutex_unlock
[call site]
01004
wake_next_worker
[function]
[call site]
01005
pthread_mutex_lock
[call site]
01006
__assert_fail
[call site]
01007
__assert_fail
[call site]
01008
pthread_cond_signal
[call site]
01009
pthread_mutex_unlock
[call site]
01010
pthread_mutex_unlock
[call site]
01011
bgzf_encode_level0_func
[function]
[call site]
01012
u16_to_le
[function]
[call site]
01013
u16_to_le
[function]
[call site]
01014
u16_to_le
[function]
[call site]
01015
hts_crc32
[function]
[call site]
01016
crc32
[call site]
01017
u32_to_le
[function]
[call site]
01018
u32_to_le
[function]
[call site]
01019
job_cleanup
[function]
[call site]
01020
pthread_mutex_lock
[call site]
01021
pool_free
[function]
[call site]
01022
pthread_mutex_unlock
[call site]
01023
hts_tpool_dispatch3
[function]
[call site]
01024
bgzf_encode_func
[function]
[call site]
01025
bgzf_compress
[function]
[call site]
01026
u16_to_le
[function]
[call site]
01027
u16_to_le
[function]
[call site]
01028
deflateInit2_
[call site]
01029
bgzf_zerr
[function]
[call site]
01030
hts_log
[function]
[call site]
01031
deflate
[call site]
01032
deflateEnd
[call site]
01033
bgzf_zerr
[function]
[call site]
01034
hts_log
[function]
[call site]
01035
deflateEnd
[call site]
01036
deflateEnd
[call site]
01037
bgzf_zerr
[function]
[call site]
01038
hts_log
[function]
[call site]
01039
packInt16
[function]
[call site]
01040
crc32
[call site]
01041
packInt32
[function]
[call site]
01042
packInt32
[function]
[call site]
01043
job_cleanup
[function]
[call site]
01044
job_cleanup
[function]
[call site]
01045
pthread_mutex_lock
[call site]
01046
pthread_mutex_unlock
[call site]
01047
mt_flush_queue
[function]
[call site]
01048
pthread_mutex_lock
[call site]
01049
hts_tpool_process_is_shutdown
[function]
[call site]
01050
pthread_mutex_lock
[call site]
01051
pthread_mutex_unlock
[call site]
01052
pthread_mutex_unlock
[call site]
01053
hts_usleep
[function]
[call site]
01054
nanosleep
[call site]
01055
pthread_mutex_lock
[call site]
01056
pthread_mutex_unlock
[call site]
01057
hts_tpool_process_flush
[function]
[call site]
01058
pthread_mutex_lock
[call site]
01059
pthread_cond_signal
[call site]
01060
pthread_cond_wait
[call site]
01061
gettimeofday
[call site]
01062
pthread_cond_timedwait
[call site]
01063
gettimeofday
[call site]
01064
pthread_cond_timedwait
[call site]
01065
pthread_mutex_unlock
[call site]
01066
pthread_mutex_lock
[call site]
01067
pthread_mutex_unlock
[call site]
01068
hflush
[function]
[call site]
01069
flush_buffer
[function]
[call site]
01070
__errno_location
[call site]
01071
bgzf_index_add_block
[function]
[call site]
01072
hts_realloc_p
[function]
[call site]
01073
deflate_block
[function]
[call site]
01074
bgzf_compress
[function]
[call site]
01075
bgzf_gzip_compress
[function]
[call site]
01076
deflate
[call site]
01077
bgzf_zerr
[function]
[call site]
01078
hts_log
[function]
[call site]
01079
hts_log
[function]
[call site]
01080
hts_log
[function]
[call site]
01081
bgzf_zerr
[function]
[call site]
01082
hts_log
[function]
[call site]
01083
hwrite
[function]
[call site]
01084
hfile_set_blksize
[function]
[call site]
01085
realloc
[call site]
01086
hwrite2
[function]
[call site]
01087
flush_buffer
[function]
[call site]
01088
__errno_location
[call site]
01089
hwrite2
[function]
[call site]
01090
hts_log
[function]
[call site]
01091
bgzf_close_mt
[function]
[call site]
01092
mt_destroy
[function]
[call site]
01093
pthread_mutex_lock
[call site]
01094
pthread_cond_signal
[call site]
01095
hts_tpool_wake_dispatch
[function]
[call site]
01096
pthread_mutex_lock
[call site]
01097
pthread_cond_signal
[call site]
01098
pthread_mutex_unlock
[call site]
01099
pthread_mutex_unlock
[call site]
01100
hts_tpool_process_is_shutdown
[function]
[call site]
01101
hts_tpool_process_destroy
[function]
[call site]
01102
pthread_mutex_lock
[call site]
01103
pthread_mutex_unlock
[call site]
01104
hts_tpool_process_reset
[function]
[call site]
01105
pthread_mutex_lock
[call site]
01106
pthread_mutex_unlock
[call site]
01107
hts_tpool_delete_result
[function]
[call site]
01108
hts_tpool_process_flush
[function]
[call site]
01109
pthread_mutex_lock
[call site]
01110
pthread_cond_signal
[call site]
01111
pthread_mutex_unlock
[call site]
01112
hts_tpool_delete_result
[function]
[call site]
01113
pthread_mutex_lock
[call site]
01114
hts_tpool_process_detach_locked
[function]
[call site]
01115
hts_tpool_process_shutdown_locked
[function]
[call site]
01116
pthread_cond_broadcast
[call site]
01117
pthread_cond_broadcast
[call site]
01118
pthread_cond_broadcast
[call site]
01119
pthread_cond_broadcast
[call site]
01120
pthread_mutex_unlock
[call site]
01121
pthread_cond_destroy
[call site]
01122
pthread_cond_destroy
[call site]
01123
pthread_cond_destroy
[call site]
01124
pthread_cond_destroy
[call site]
01125
pthread_mutex_unlock
[call site]
01126
pthread_join
[call site]
01127
pthread_mutex_destroy
[call site]
01128
pthread_mutex_destroy
[call site]
01129
pthread_mutex_destroy
[call site]
01130
pthread_cond_destroy
[call site]
01131
pool_free
[function]
[call site]
01132
hts_tpool_destroy
[function]
[call site]
01133
pthread_mutex_lock
[call site]
01134
pthread_cond_signal
[call site]
01135
pthread_mutex_unlock
[call site]
01136
pthread_join
[call site]
01137
pthread_mutex_destroy
[call site]
01138
pthread_cond_destroy
[call site]
01139
pool_destroy
[function]
[call site]
01140
fflush
[call site]
01141
deflate_block
[function]
[call site]
01142
bgzf_zerr
[function]
[call site]
01143
hts_log
[function]
[call site]
01144
bgzf_close_mt
[function]
[call site]
01145
hwrite
[function]
[call site]
01146
hflush
[function]
[call site]
01147
hts_log
[function]
[call site]
01148
bgzf_close_mt
[function]
[call site]
01149
inflateEnd
[call site]
01150
deflateEnd
[call site]
01151
bgzf_zerr
[function]
[call site]
01152
hts_log
[function]
[call site]
01153
hclose
[function]
[call site]
01154
writebuffer_is_nonempty
[function]
[call site]
01155
hflush
[function]
[call site]
01156
__errno_location
[call site]
01157
hfile_destroy
[function]
[call site]
01158
__errno_location
[call site]
01159
bgzf_index_destroy
[function]
[call site]
01160
free_cache
[function]
[call site]
01161
kh_destroy_bgzf_cache
[function]
[call site]
01162
bgzf_clear_private_data
[function]
[call site]
01163
__assert_fail
[call site]
01164
pthread_mutex_destroy
[call site]
01165
pthread_mutex_init
[call site]
01166
pthread_mutex_init
[call site]
01167
pthread_mutex_init
[call site]
01168
pthread_mutex_init
[call site]
01169
cram_new_metrics
[function]
[call site]
01170
calloc
[call site]
01171
kh_init_m_metrics
[function]
[call site]
01172
calloc
[call site]
01173
refs_from_header
[function]
[call site]
01174
sam_hdr_fill_hrecs
[function]
[call site]
01175
hts_realloc_ps
[function]
[call site]
01176
kh_get_refs
[function]
[call site]
01177
__ac_FNV1a_hash_string
[function]
[call site]
01178
strcmp
[call site]
01179
calloc
[call site]
01180
string_dup
[function]
[call site]
01181
sam_hrecs_find_type_id
[function]
[call site]
01182
sam_hrecs_find_key
[function]
[call site]
01183
string_dup
[function]
[call site]
01184
sam_hrecs_find_key
[function]
[call site]
01185
strtoll
[call site]
01186
kh_put_refs
[function]
[call site]
01187
kh_resize_refs
[function]
[call site]
01188
realloc
[call site]
01189
cram_set_option
[function]
[call site]
01190
cram_set_voption
[function]
[call site]
01191
__errno_location
[call site]
01192
strdup
[call site]
01193
refs_free
[function]
[call site]
01194
cram_seek_to_refpos
[function]
[call site]
01195
cram_index_query
[function]
[call site]
01196
cram_seek
[function]
[call site]
01197
cram_drain_rqueue
[function]
[call site]
01198
hts_tpool_process_empty
[function]
[call site]
01199
pthread_mutex_lock
[call site]
01200
pthread_mutex_unlock
[call site]
01201
hts_tpool_next_result_wait
[function]
[call site]
01202
pthread_mutex_lock
[call site]
01203
hts_tpool_next_result_locked
[function]
[call site]
01204
pthread_cond_signal
[call site]
01205
wake_next_worker
[function]
[call site]
01206
gettimeofday
[call site]
01207
pthread_mutex_unlock
[call site]
01208
hts_tpool_process_destroy
[function]
[call site]
01209
pthread_cond_timedwait
[call site]
01210
pthread_mutex_unlock
[call site]
01211
hts_tpool_result_data
[function]
[call site]
01212
cram_free_container
[function]
[call site]
01213
cram_free_slice
[function]
[call site]
01214
hts_tpool_delete_result
[function]
[call site]
01215
cram_free_container
[function]
[call site]
01216
cram_free_slice
[function]
[call site]
01217
cram_free_container
[function]
[call site]
01218
hseek
[function]
[call site]
01219
pthread_mutex_lock
[call site]
01220
pthread_mutex_unlock
[call site]
01221
cram_free_container
[function]
[call site]
01222
cram_free_container
[function]
[call site]
01223
pthread_mutex_lock
[call site]
01224
pthread_mutex_unlock
[call site]
01225
pthread_mutex_lock
[call site]
01226
pthread_mutex_unlock
[call site]
01227
pthread_mutex_lock
[call site]
01228
pthread_mutex_unlock
[call site]
01229
cram_load_reference
[function]
[call site]
01230
refs_load_fai
[function]
[call site]
01231
strlen
[call site]
01232
refs_create
[function]
[call site]
01233
bgzf_close
[function]
[call site]
01234
strstr
[call site]
01235
string_ndup
[function]
[call site]
01236
snprintf
[call site]
01237
strcmp
[call site]
01238
string_ndup
[function]
[call site]
01239
snprintf
[call site]
01240
string_dup
[function]
[call site]
01241
snprintf
[call site]
01242
bgzf_open_ref
[function]
[call site]
01243
strncmp
[call site]
01244
hisremote
[function]
[call site]
01245
find_scheme_handler
[function]
[call site]
01246
snprintf
[call site]
01247
access
[call site]
01248
fai_build
[function]
[call site]
01249
fai_build3
[function]
[call site]
01250
fai_build3_core
[function]
[call site]
01251
bgzf_open
[function]
[call site]
01252
strchr
[call site]
01253
hopen
[function]
[call site]
01254
bgzf_read_init
[function]
[call site]
01255
hclose_abruptly
[function]
[call site]
01256
strchr
[call site]
01257
hopen
[function]
[call site]
01258
bgzf_write_init
[function]
[call site]
01259
__errno_location
[call site]
01260
ed_is_big
[function]
[call site]
01261
strerror
[call site]
01262
hts_log
[function]
[call site]
01263
bgzf_index_build_init
[function]
[call site]
01264
bgzf_index_destroy
[function]
[call site]
01265
calloc
[call site]
01266
hts_log
[function]
[call site]
01267
fai_build_core
[function]
[call site]
01268
calloc
[call site]
01269
kh_init_s
[function]
[call site]
01270
bgzf_getc_
[function]
[call site]
01271
bgzf_getc
[function]
[call site]
01272
bgzf_read_block
[function]
[call site]
01273
hts_tpool_next_result_wait
[function]
[call site]
01274
hts_tpool_result_data
[function]
[call site]
01275
hts_malloc_p
[function]
[call site]
01276
mt_destroy
[function]
[call site]
01277
hts_tpool_delete_result
[function]
[call site]
01278
hts_log
[function]
[call site]
01279
hts_tpool_delete_result
[function]
[call site]
01280
hts_log
[function]
[call site]
01281
hts_tpool_delete_result
[function]
[call site]
01282
bgzf_index_add_block
[function]
[call site]
01283
pthread_mutex_lock
[call site]
01284
pool_free
[function]
[call site]
01285
pthread_mutex_unlock
[call site]
01286
hts_tpool_delete_result
[function]
[call site]
01287
bgzf_htell
[function]
[call site]
01288
pthread_mutex_lock
[call site]
01289
pthread_mutex_unlock
[call site]
01290
htell
[function]
[call site]
01291
hread
[function]
[call site]
01292
__errno_location
[call site]
01293
strerror
[call site]
01294
hts_log
[function]
[call site]
01295
inflate_gzip_block
[function]
[call site]
01296
hread
[function]
[call site]
01297
inflate
[call site]
01298
bgzf_zerr
[function]
[call site]
01299
hts_log
[function]
[call site]
01300
hpeek
[function]
[call site]
01301
inflateReset
[call site]
01302
bgzf_zerr
[function]
[call site]
01303
hts_log
[function]
[call site]
01304
hts_log
[function]
[call site]
01305
hts_log
[function]
[call site]
01306
load_block_from_cache
[function]
[call site]
01307
kh_get_bgzf_cache
[function]
[call site]
01308
hseek
[function]
[call site]
01309
hts_log
[function]
[call site]
01310
exit
[call site]
01311
hread
[function]
[call site]
01312
hts_log
[function]
[call site]
01313
check_header
[function]
[call site]
01314
unpackInt16
[function]
[call site]
01315
unpackInt16
[function]
[call site]
01316
hts_log
[function]
[call site]
01317
hread
[function]
[call site]
01318
calloc
[call site]
01319
inflateInit2_
[call site]
01320
bgzf_zerr
[function]
[call site]
01321
hts_log
[function]
[call site]
01322
inflate_gzip_block
[function]
[call site]
01323
hts_log
[function]
[call site]
01324
unpackInt16
[function]
[call site]
01325
hts_log
[function]
[call site]
01326
hread
[function]
[call site]
01327
hts_log
[function]
[call site]
01328
inflate_block
[function]
[call site]
01329
le_to_u32
[function]
[call site]
01330
bgzf_uncompress
[function]
[call site]
01331
inflateInit2_
[call site]
01332
bgzf_zerr
[function]
[call site]
01333
hts_log
[function]
[call site]
01334
inflate
[call site]
01335
bgzf_zerr
[function]
[call site]
01336
inflateEnd
[call site]
01337
bgzf_zerr
[function]
[call site]
01338
hts_log
[function]
[call site]
01339
inflateEnd
[call site]
01340
bgzf_zerr
[function]
[call site]
01341
hts_log
[function]
[call site]
01342
crc32
[call site]
01343
hts_log
[function]
[call site]
01344
bgzf_zerr
[function]
[call site]
01345
hts_log
[function]
[call site]
01346
bgzf_htell
[function]
[call site]
01347
bgzf_index_add_block
[function]
[call site]
01348
cache_block
[function]
[call site]
01349
kh_del_bgzf_cache
[function]
[call site]
01350
kh_put_bgzf_cache
[function]
[call site]
01351
kh_resize_bgzf_cache
[function]
[call site]
01352
realloc
[call site]
01353
bgzf_htell
[function]
[call site]
01354
hts_log
[function]
[call site]
01355
hts_log
[function]
[call site]
01356
bgzf_getc_
[function]
[call site]
01357
hts_log
[function]
[call site]
01358
__ctype_b_loc
[call site]
01359
hts_log
[function]
[call site]
01360
fai_insert_index
[function]
[call site]
01361
hts_log
[function]
[call site]
01362
hts_log
[function]
[call site]
01363
hts_log
[function]
[call site]
01364
hts_log
[function]
[call site]
01365
strdup
[call site]
01366
kh_put_s
[function]
[call site]
01367
kh_resize_s
[function]
[call site]
01368
__ac_FNV1a_hash_string
[function]
[call site]
01369
hts_log
[function]
[call site]
01370
hts_realloc_p
[function]
[call site]
01371
hts_log
[function]
[call site]
01372
__ctype_b_loc
[call site]
01373
kputc
[function]
[call site]
01374
bgzf_getc_
[function]
[call site]
01375
kputsn
[function]
[call site]
01376
hts_log
[function]
[call site]
01377
bgzf_getc_
[function]
[call site]
01378
bgzf_utell
[function]
[call site]
01379
bgzf_getc_
[function]
[call site]
01380
bgzf_utell
[function]
[call site]
01381
hts_log
[function]
[call site]
01382
isgraph_
[function]
[call site]
01383
bgzf_getc_
[function]
[call site]
01384
hts_log
[function]
[call site]
01385
bgzf_getc_
[function]
[call site]
01386
bgzf_utell
[function]
[call site]
01387
hts_log
[function]
[call site]
01388
hts_log
[function]
[call site]
01389
isgraph_
[function]
[call site]
01390
bgzf_getc_
[function]
[call site]
01391
hts_log
[function]
[call site]
01392
hts_log
[function]
[call site]
01393
fai_insert_index
[function]
[call site]
01394
hts_log
[function]
[call site]
01395
fai_destroy
[function]
[call site]
01396
kh_destroy_s
[function]
[call site]
01397
bgzf_close
[function]
[call site]
01398
hts_log
[function]
[call site]
01399
ksprintf
[function]
[call site]
01400
ksprintf
[function]
[call site]
01401
bgzf_index_dump
[function]
[call site]
01402
hts_log
[function]
[call site]
01403
__errno_location
[call site]
01404
get_name_suffix
[function]
[call site]
01405
strlen
[call site]
01406
snprintf
[call site]
01407
hopen
[function]
[call site]
01408
bgzf_index_dump_hfile
[function]
[call site]
01409
hts_log
[function]
[call site]
01410
__errno_location
[call site]
01411
bgzf_flush
[function]
[call site]
01412
hwrite_uint64
[function]
[call site]
01413
ed_is_big
[function]
[call site]
01414
ed_swap_8
[function]
[call site]
01415
hwrite
[function]
[call site]
01416
hwrite_uint64
[function]
[call site]
01417
hwrite_uint64
[function]
[call site]
01418
__errno_location
[call site]
01419
strerror
[call site]
01420
hts_log
[function]
[call site]
01421
hclose
[function]
[call site]
01422
__errno_location
[call site]
01423
strerror
[call site]
01424
hts_log
[function]
[call site]
01425
hclose_abruptly
[function]
[call site]
01426
hts_log
[function]
[call site]
01427
bgzf_close
[function]
[call site]
01428
__errno_location
[call site]
01429
strerror
[call site]
01430
hts_log
[function]
[call site]
01431
hopen
[function]
[call site]
01432
__errno_location
[call site]
01433
strerror
[call site]
01434
hts_log
[function]
[call site]
01435
fai_save
[function]
[call site]
01436
kh_get_s
[function]
[call site]
01437
__assert_fail
[call site]
01438
snprintf
[call site]
01439
snprintf
[call site]
01440
hputs
[function]
[call site]
01441
strlen
[call site]
01442
hputs2
[function]
[call site]
01443
hwrite2
[function]
[call site]
01444
hputs
[function]
[call site]
01445
__errno_location
[call site]
01446
strerror
[call site]
01447
hts_log
[function]
[call site]
01448
hclose
[function]
[call site]
01449
__errno_location
[call site]
01450
strerror
[call site]
01451
hts_log
[function]
[call site]
01452
fai_destroy
[function]
[call site]
01453
__errno_location
[call site]
01454
bgzf_close
[function]
[call site]
01455
fai_destroy
[function]
[call site]
01456
__errno_location
[call site]
01457
bgzf_open
[function]
[call site]
01458
perror
[call site]
01459
bgzf_index_load
[function]
[call site]
01460
get_name_suffix
[function]
[call site]
01461
hopen
[function]
[call site]
01462
bgzf_index_load_hfile
[function]
[call site]
01463
calloc
[call site]
01464
hread_uint64
[function]
[call site]
01465
hread
[function]
[call site]
01466
ed_is_big
[function]
[call site]
01467
ed_swap_8p
[function]
[call site]
01468
hread_uint64
[function]
[call site]
01469
hread_uint64
[function]
[call site]
01470
__errno_location
[call site]
01471
strerror
[call site]
01472
hts_log
[function]
[call site]
01473
hclose
[function]
[call site]
01474
__errno_location
[call site]
01475
strerror
[call site]
01476
hts_log
[function]
[call site]
01477
hclose_abruptly
[function]
[call site]
01478
hts_log
[function]
[call site]
01479
bgzf_close
[function]
[call site]
01480
hts_log
[function]
[call site]
01481
hopen
[function]
[call site]
01482
hts_log
[function]
[call site]
01483
perror
[call site]
01484
hgets
[function]
[call site]
01485
__errno_location
[call site]
01486
hgetln
[function]
[call site]
01487
hgetdelim
[function]
[call site]
01488
__errno_location
[call site]
01489
writebuffer_is_nonempty
[function]
[call site]
01490
__errno_location
[call site]
01491
memchr
[call site]
01492
refill_buffer
[function]
[call site]
01493
isspace_c
[function]
[call site]
01494
string_dup
[function]
[call site]
01495
isspace_c
[function]
[call site]
01496
strtoll
[call site]
01497
isspace_c
[function]
[call site]
01498
strtoll
[call site]
01499
isspace_c
[function]
[call site]
01500
strtol
[call site]
01501
isspace_c
[function]
[call site]
01502
strtol
[call site]
01503
kh_put_refs
[function]
[call site]
01504
hts_realloc_p
[function]
[call site]
01505
hclose
[function]
[call site]
01506
hclose_abruptly
[function]
[call site]
01507
refs_free
[function]
[call site]
01508
sanitise_SQ_lines
[function]
[call site]
01509
kh_get_refs
[function]
[call site]
01510
strcmp
[call site]
01511
__assert_fail
[call site]
01512
hts_log
[function]
[call site]
01513
refs_free
[function]
[call site]
01514
refs_create
[function]
[call site]
01515
refs_from_header
[function]
[call site]
01516
refs2id
[function]
[call site]
01517
calloc
[call site]
01518
kh_get_refs
[function]
[call site]
01519
__isoc99_sscanf
[call site]
01520
hts_log
[function]
[call site]
01521
hts_log
[function]
[call site]
01522
__errno_location
[call site]
01523
cram_init_tables
[function]
[call site]
01524
hts_tpool_init
[function]
[call site]
01525
hts_malloc_p
[function]
[call site]
01526
hts_malloc_p
[function]
[call site]
01527
pthread_mutexattr_init
[call site]
01528
pthread_mutexattr_settype
[call site]
01529
pthread_mutex_init
[call site]
01530
pthread_mutexattr_destroy
[call site]
01531
pthread_mutex_lock
[call site]
01532
pthread_attr_init
[call site]
01533
pthread_attr_getstacksize
[call site]
01534
pthread_attr_setstacksize
[call site]
01535
pthread_cond_init
[call site]
01536
pthread_create
[call site]
01537
tpool_worker
[function]
[call site]
01538
pthread_mutex_lock
[call site]
01539
__assert_fail
[call site]
01540
pthread_cond_wait
[call site]
01541
__assert_fail
[call site]
01542
pthread_cond_broadcast
[call site]
01543
pthread_cond_signal
[call site]
01544
pthread_mutex_unlock
[call site]
01545
hts_tpool_add_result
[function]
[call site]
01546
pthread_mutex_lock
[call site]
01547
pthread_cond_signal
[call site]
01548
pthread_mutex_unlock
[call site]
01549
pthread_mutex_unlock
[call site]
01550
hts_tpool_process_shutdown
[function]
[call site]
01551
pthread_mutex_lock
[call site]
01552
hts_tpool_process_shutdown_locked
[function]
[call site]
01553
pthread_mutex_unlock
[call site]
01554
__assert_fail
[call site]
01555
pthread_cond_broadcast
[call site]
01556
pthread_mutex_unlock
[call site]
01557
pthread_mutex_lock
[call site]
01558
hts_tpool_process_destroy
[function]
[call site]
01559
pthread_mutex_unlock
[call site]
01560
pthread_mutex_lock
[call site]
01561
hts_tpool_process_shutdown_locked
[function]
[call site]
01562
pthread_mutex_unlock
[call site]
01563
pthread_mutex_unlock
[call site]
01564
pthread_attr_destroy
[call site]
01565
__errno_location
[call site]
01566
__errno_location
[call site]
01567
strerror
[call site]
01568
hts_log
[function]
[call site]
01569
pthread_mutex_unlock
[call site]
01570
pthread_join
[call site]
01571
pthread_cond_destroy
[call site]
01572
pthread_mutex_destroy
[call site]
01573
pthread_attr_destroy
[call site]
01574
__errno_location
[call site]
01575
hts_tpool_process_init
[function]
[call site]
01576
pthread_cond_init
[call site]
01577
pthread_cond_init
[call site]
01578
pthread_cond_init
[call site]
01579
pthread_cond_init
[call site]
01580
hts_tpool_process_attach
[function]
[call site]
01581
pthread_mutex_lock
[call site]
01582
__assert_fail
[call site]
01583
pthread_mutex_unlock
[call site]
01584
hts_tpool_size
[function]
[call site]
01585
hts_tpool_process_init
[function]
[call site]
01586
hts_log
[function]
[call site]
01587
__errno_location
[call site]
01588
bgzf_hopen
[function]
[call site]
01589
__errno_location
[call site]
01590
hts_process_opts
[function]
[call site]
01591
hts_parse_opt_list
[function]
[call site]
01592
strncpy
[call site]
01593
hts_opt_add
[function]
[call site]
01594
strdup
[call site]
01595
strchr
[call site]
01596
strcmp
[call site]
01597
strcmp
[call site]
01598
atoi
[call site]
01599
strcmp
[call site]
01600
strcmp
[call site]
01601
atoi
[call site]
01602
strcmp
[call site]
01603
strcmp
[call site]
01604
atoi
[call site]
01605
strcmp
[call site]
01606
strcmp
[call site]
01607
atoi
[call site]
01608
strcmp
[call site]
01609
strcmp
[call site]
01610
atoi
[call site]
01611
strcmp
[call site]
01612
strcmp
[call site]
01613
atoi
[call site]
01614
strcmp
[call site]
01615
strcmp
[call site]
01616
atoi
[call site]
01617
strcmp
[call site]
01618
strcmp
[call site]
01619
atoi
[call site]
01620
strcmp
[call site]
01621
strcmp
[call site]
01622
atoi
[call site]
01623
strcmp
[call site]
01624
strcmp
[call site]
01625
atoi
[call site]
01626
strcmp
[call site]
01627
strcmp
[call site]
01628
atoi
[call site]
01629
strcmp
[call site]
01630
strcmp
[call site]
01631
atoi
[call site]
01632
strcmp
[call site]
01633
strcmp
[call site]
01634
atoi
[call site]
01635
strcmp
[call site]
01636
strcmp
[call site]
01637
atoi
[call site]
01638
strcmp
[call site]
01639
atoi
[call site]
01640
strcmp
[call site]
01641
strcmp
[call site]
01642
strcmp
[call site]
01643
strcmp
[call site]
01644
strcmp
[call site]
01645
strcmp
[call site]
01646
strcmp
[call site]
01647
strcmp
[call site]
01648
strcmp
[call site]
01649
strcmp
[call site]
01650
strcmp
[call site]
01651
strcmp
[call site]
01652
strcmp
[call site]
01653
strcmp
[call site]
01654
atoi
[call site]
01655
strcmp
[call site]
01656
strcmp
[call site]
01657
atoi
[call site]
01658
strcmp
[call site]
01659
strcmp
[call site]
01660
strtol
[call site]
01661
hts_log
[function]
[call site]
01662
strcmp
[call site]
01663
strcmp
[call site]
01664
strtol
[call site]
01665
strcmp
[call site]
01666
strcmp
[call site]
01667
strtol
[call site]
01668
strcmp
[call site]
01669
strcmp
[call site]
01670
strcmp
[call site]
01671
strcmp
[call site]
01672
atoi
[call site]
01673
strcmp
[call site]
01674
strcmp
[call site]
01675
atoi
[call site]
01676
strcmp
[call site]
01677
strcmp
[call site]
01678
strtol
[call site]
01679
strcmp
[call site]
01680
strcmp
[call site]
01681
strtol
[call site]
01682
strcmp
[call site]
01683
strcmp
[call site]
01684
strcmp
[call site]
01685
strcmp
[call site]
01686
strcmp
[call site]
01687
strcmp
[call site]
01688
strcmp
[call site]
01689
strcmp
[call site]
01690
strcmp
[call site]
01691
strcmp
[call site]
01692
strcmp
[call site]
01693
strcmp
[call site]
01694
strcmp
[call site]
01695
strcmp
[call site]
01696
strcmp
[call site]
01697
strcmp
[call site]
01698
hts_log
[function]
[call site]
01699
hts_opt_apply
[function]
[call site]
01700
strdup
[call site]
01701
hts_set_opt
[function]
[call site]
01702
hts_set_threads
[function]
[call site]
01703
sam_set_threads
[function]
[call site]
01704
hts_tpool_init
[function]
[call site]
01705
sam_set_thread_pool
[function]
[call site]
01706
sam_state_create
[function]
[call site]
01707
calloc
[call site]
01708
pthread_mutex_init
[call site]
01709
pthread_mutex_init
[call site]
01710
pthread_cond_init
[call site]
01711
hts_tpool_size
[function]
[call site]
01712
hts_tpool_process_init
[function]
[call site]
01713
sam_state_destroy
[function]
[call site]
01714
pthread_mutex_lock
[call site]
01715
pthread_cond_signal
[call site]
01716
hts_tpool_wake_dispatch
[function]
[call site]
01717
hts_tpool_wake_dispatch
[function]
[call site]
01718
pthread_mutex_unlock
[call site]
01719
hts_usleep
[function]
[call site]
01720
pthread_mutex_lock
[call site]
01721
pthread_mutex_unlock
[call site]
01722
hts_tpool_dispatch
[function]
[call site]
01723
hts_tpool_dispatch3
[function]
[call site]
01724
sam_format_worker
[function]
[call site]
01725
pthread_mutex_lock
[call site]
01726
pthread_mutex_unlock
[call site]
01727
calloc
[call site]
01728
sam_state_err
[function]
[call site]
01729
pthread_mutex_lock
[call site]
01730
pthread_mutex_unlock
[call site]
01731
sam_format1_append
[function]
[call site]
01732
kputsn_
[function]
[call site]
01733
__errno_location
[call site]
01734
ks_resize
[function]
[call site]
01735
kputc_
[function]
[call site]
01736
ks_resize
[function]
[call site]
01737
kputw
[function]
[call site]
01738
ks_resize
[function]
[call site]
01739
kputuw
[function]
[call site]
01740
ks_resize
[function]
[call site]
01741
ks_resize
[function]
[call site]
01742
kputc_
[function]
[call site]
01743
kputs
[function]
[call site]
01744
kputc_
[function]
[call site]
01745
kputsn_
[function]
[call site]
01746
kputll
[function]
[call site]
01747
ks_resize
[function]
[call site]
01748
kputuw
[function]
[call site]
01749
kputc_
[function]
[call site]
01750
kputw
[function]
[call site]
01751
kputc_
[function]
[call site]
01752
kputw
[function]
[call site]
01753
kputc_
[function]
[call site]
01754
kputc_
[function]
[call site]
01755
kputc_
[function]
[call site]
01756
kputsn_
[function]
[call site]
01757
kputsn_
[function]
[call site]
01758
kputs
[function]
[call site]
01759
kputc_
[function]
[call site]
01760
kputll
[function]
[call site]
01761
kputc_
[function]
[call site]
01762
kputll
[function]
[call site]
01763
kputc_
[function]
[call site]
01764
ks_resize
[function]
[call site]
01765
nibble2base
[function]
[call site]
01766
add33
[function]
[call site]
01767
kputsn_
[function]
[call site]
01768
kputc_
[function]
[call site]
01769
sam_format_aux1
[function]
[call site]
01770
kputsn_
[function]
[call site]
01771
kputc_
[function]
[call site]
01772
kputsn_
[function]
[call site]
01773
kputw
[function]
[call site]
01774
kputsn_
[function]
[call site]
01775
kputw
[function]
[call site]
01776
kputsn_
[function]
[call site]
01777
le_to_u16
[function]
[call site]
01778
kputuw
[function]
[call site]
01779
kputsn_
[function]
[call site]
01780
le_to_i16
[function]
[call site]
01781
le_to_u16
[function]
[call site]
01782
kputw
[function]
[call site]
01783
kputsn_
[function]
[call site]
01784
le_to_u32
[function]
[call site]
01785
kputuw
[function]
[call site]
01786
kputsn_
[function]
[call site]
01787
le_to_i32
[function]
[call site]
01788
le_to_u32
[function]
[call site]
01789
kputw
[function]
[call site]
01790
kputsn_
[function]
[call site]
01791
kputc_
[function]
[call site]
01792
le_to_float
[function]
[call site]
01793
le_to_u32
[function]
[call site]
01794
ksprintf
[function]
[call site]
01795
le_to_double
[function]
[call site]
01796
le_to_u64
[function]
[call site]
01797
ksprintf
[function]
[call site]
01798
kputc_
[function]
[call site]
01799
kputc_
[function]
[call site]
01800
kputc_
[function]
[call site]
01801
kputsn
[function]
[call site]
01802
le_to_u32
[function]
[call site]
01803
kputsn_
[function]
[call site]
01804
kputc
[function]
[call site]
01805
ks_expand
[function]
[call site]
01806
__errno_location
[call site]
01807
ks_resize
[function]
[call site]
01808
kputw
[function]
[call site]
01809
ks_expand
[function]
[call site]
01810
kputuw
[function]
[call site]
01811
ks_expand
[function]
[call site]
01812
le_to_i16
[function]
[call site]
01813
kputw
[function]
[call site]
01814
ks_expand
[function]
[call site]
01815
le_to_u16
[function]
[call site]
01816
kputuw
[function]
[call site]
01817
ks_expand
[function]
[call site]
01818
le_to_i32
[function]
[call site]
01819
kputw
[function]
[call site]
01820
ks_expand
[function]
[call site]
01821
le_to_u32
[function]
[call site]
01822
kputuw
[function]
[call site]
01823
ks_expand
[function]
[call site]
01824
le_to_float
[function]
[call site]
01825
kputd
[function]
[call site]
01826
__errno_location
[call site]
01827
hts_log
[function]
[call site]
01828
__errno_location
[call site]
01829
kputsn
[function]
[call site]
01830
hts_log
[function]
[call site]
01831
__errno_location
[call site]
01832
hts_log
[function]
[call site]
01833
__errno_location
[call site]
01834
__errno_location
[call site]
01835
sam_state_err
[function]
[call site]
01836
kputc
[function]
[call site]
01837
pthread_mutex_lock
[call site]
01838
pthread_mutex_unlock
[call site]
01839
hts_tpool_process_flush
[function]
[call site]
01840
pthread_mutex_lock
[call site]
01841
pthread_mutex_unlock
[call site]
01842
hts_tpool_process_empty
[function]
[call site]
01843
hts_usleep
[function]
[call site]
01844
pthread_mutex_lock
[call site]
01845
hts_tpool_process_is_shutdown
[function]
[call site]
01846
pthread_mutex_unlock
[call site]
01847
hts_tpool_process_shutdown
[function]
[call site]
01848
pthread_join
[call site]
01849
hts_tpool_process_destroy
[function]
[call site]
01850
hts_tpool_destroy
[function]
[call site]
01851
pthread_mutex_destroy
[call site]
01852
pthread_mutex_destroy
[call site]
01853
pthread_cond_destroy
[call site]
01854
sam_free_sp_bams
[function]
[call site]
01855
sam_free_sp_bams
[function]
[call site]
01856
bam_hdr_destroy
[function]
[call site]
01857
sam_hdr_destroy
[function]
[call site]
01858
bgzf_thread_pool
[function]
[call site]
01859
calloc
[call site]
01860
hts_tpool_size
[function]
[call site]
01861
hts_tpool_process_init
[function]
[call site]
01862
hts_tpool_process_ref_incr
[function]
[call site]
01863
pthread_mutex_lock
[call site]
01864
pthread_mutex_unlock
[call site]
01865
pool_create
[function]
[call site]
01866
pthread_mutex_init
[call site]
01867
pthread_mutex_init
[call site]
01868
pthread_mutex_init
[call site]
01869
pthread_cond_init
[call site]
01870
pthread_create
[call site]
01871
hts_tpool_destroy
[function]
[call site]
01872
hts_get_bgzfp
[function]
[call site]
01873
bgzf_mt
[function]
[call site]
01874
hts_tpool_init
[function]
[call site]
01875
bgzf_thread_pool
[function]
[call site]
01876
hts_tpool_destroy
[function]
[call site]
01877
hts_set_opt
[function]
[call site]
01878
hts_hfile
[function]
[call site]
01879
bgzf_hfile
[function]
[call site]
01880
cram_hfile
[function]
[call site]
01881
bgzf_hfile
[function]
[call site]
01882
hfile_set_blksize
[function]
[call site]
01883
hts_log
[function]
[call site]
01884
hts_log
[function]
[call site]
01885
hts_set_thread_pool
[function]
[call site]
01886
sam_set_thread_pool
[function]
[call site]
01887
hts_get_bgzfp
[function]
[call site]
01888
bgzf_thread_pool
[function]
[call site]
01889
hts_set_opt
[function]
[call site]
01890
hts_set_cache_size
[function]
[call site]
01891
hts_get_bgzfp
[function]
[call site]
01892
bgzf_set_cache_size
[function]
[call site]
01893
fastq_state_set
[function]
[call site]
01894
fastq_state_init
[function]
[call site]
01895
strcmp
[call site]
01899
kh_init_tag
[function]
[call site]
01900
calloc
[call site]
01901
strlen
[call site]
01902
hts_log
[function]
[call site]
01903
kh_put_tag
[function]
[call site]
01904
kh_resize_tag
[function]
[call site]
01905
realloc
[call site]
01906
strncpy
[call site]
01907
strcmp
[call site]
01908
__ctype_b_loc
[call site]
01909
isalnum_c
[function]
[call site]
01910
strncpy
[call site]
01911
hts_log
[function]
[call site]
01912
regfree
[call site]
01913
regcomp
[call site]
01914
hts_log
[function]
[call site]
01915
fastq_state_set
[function]
[call site]
01916
fastq_state_set
[function]
[call site]
01917
cram_set_option
[function]
[call site]
01918
hts_set_filter_expression
[function]
[call site]
01919
hts_filter_free
[function]
[call site]
01920
regfree
[call site]
01921
hts_filter_init
[function]
[call site]
01922
calloc
[call site]
01923
strlen
[call site]
01924
hts_malloc_ps
[function]
[call site]
01925
hts_add_sat2
[function]
[call site]
01926
hts_prod_sat2
[function]
[call site]
01927
hts_malloc
[function]
[call site]
01928
cram_set_voption
[function]
[call site]
01929
hts_set_opt
[function]
[call site]
01930
hts_opt_free
[function]
[call site]
01931
hts_opt_free
[function]
[call site]
01932
hclose_abruptly
[function]
[call site]
01933
hts_log
[function]
[call site]
01934
hclose_abruptly
[function]
[call site]
01935
hclose
[function]
[call site]
01936
abort
[call site]
01937
hts_close
[function]
[call site]
01938
__errno_location
[call site]
01939
bgzf_close
[function]
[call site]
01940
cram_eof
[function]
[call site]
01941
hts_log
[function]
[call site]
01942
cram_close
[function]
[call site]
01943
cram_update_curr_slice
[function]
[call site]
01944
cram_flush_container_mt
[function]
[call site]
01945
pthread_mutex_lock
[call site]
01946
reset_metrics
[function]
[call site]
01947
pthread_mutex_unlock
[call site]
01948
hts_tpool_process_flush
[function]
[call site]
01949
pthread_mutex_lock
[call site]
01950
pthread_mutex_unlock
[call site]
01951
cram_flush_container
[function]
[call site]
01952
cram_encode_container
[function]
[call site]
01953
pthread_mutex_lock
[call site]
01954
hts_log
[function]
[call site]
01955
hts_log
[function]
[call site]
01956
pthread_mutex_unlock
[call site]
01957
pthread_mutex_unlock
[call site]
01958
cram_get_ref
[function]
[call site]
01959
pthread_mutex_lock
[call site]
01960
hts_log
[function]
[call site]
01961
pthread_mutex_unlock
[call site]
01962
pthread_mutex_lock
[call site]
01963
hts_log
[function]
[call site]
01964
cram_populate_ref
[function]
[call site]
01965
getenv
[call site]
01966
getenv
[call site]
01967
hts_log
[function]
[call site]
01968
sam_hrecs_find_type_id
[function]
[call site]
01969
sam_hrecs_find_key
[function]
[call site]
01970
hts_log
[function]
[call site]
01971
expand_cache_path
[function]
[call site]
01972
strchr
[call site]
01973
strncpy
[call site]
01974
strlen
[call site]
01975
strcpy
[call site]
01976
strtol
[call site]
01977
strlen
[call site]
01978
strncpy
[call site]
01979
strlen
[call site]
01980
strcpy
[call site]
01981
strlen
[call site]
01982
strcpy
[call site]
01983
stat
[call site]
01984
stat
[call site]
01985
bgzf_open
[function]
[call site]
01986
string_dup
[function]
[call site]
01987
bgzf_close
[function]
[call site]
01988
open_path_mfile
[function]
[call site]
01989
getenv
[call site]
01990
tokenise_search_path
[function]
[call site]
01991
strlen
[call site]
01992
strncmp
[call site]
01993
strncmp
[call site]
01994
strncmp
[call site]
01995
strncmp
[call site]
01996
strncmp
[call site]
01997
strncmp
[call site]
01998
strncmp
[call site]
01999
strncmp
[call site]
02000
strncmp
[call site]
02001
strncmp
[call site]
02002
find_file_url
[function]
[call site]
02003
expand_path
[function]
[call site]
02004
strlen
[call site]
02005
strlen
[call site]
02006
hts_log
[function]
[call site]
02007
strchr
[call site]
02008
strtol
[call site]
02009
hopen
[function]
[call site]
02010
__errno_location
[call site]
02011
__errno_location
[call site]
02012
strerror
[call site]
02013
hts_log
[function]
[call site]
02014
mfcreate
[function]
[call site]
02015
hread
[function]
[call site]
02016
mfwrite
[function]
[call site]
02017
realloc
[call site]
02018
hclose_abruptly
[function]
[call site]
02019
hclose
[function]
[call site]
02020
__errno_location
[call site]
02021
strerror
[call site]
02022
hts_log
[function]
[call site]
02023
mrewind
[function]
[call site]
02024
mfdestroy
[function]
[call site]
02025
strncmp
[call site]
02026
hisremote
[function]
[call site]
02027
find_file_url
[function]
[call site]
02028
find_file_dir
[function]
[call site]
02029
expand_path
[function]
[call site]
02030
is_file
[function]
[call site]
02031
stat
[call site]
02032
mfopen
[function]
[call site]
02033
fopen
[call site]
02034
mfreopen
[function]
[call site]
02035
strchr
[call site]
02036
strchr
[call site]
02037
strchr
[call site]
02038
strchr
[call site]
02039
strchr
[call site]
02040
strchr
[call site]
02041
strchr
[call site]
02042
mfcreate
[function]
[call site]
02043
mfmmap
[function]
[call site]
02044
mfload
[function]
[call site]
02048
stat
[call site]
02049
realloc
[call site]
02050
fread
[call site]
02051
feof
[call site]
02052
fseek
[call site]
02053
mfcreate
[function]
[call site]
02054
hts_log
[function]
[call site]
02055
fseek
[call site]
02056
strlen
[call site]
02057
strcpy
[call site]
02058
strrchr
[call site]
02059
find_file_dir
[function]
[call site]
02060
mfsteal
[function]
[call site]
02061
mfdetach
[function]
[call site]
02062
mfflush
[function]
[call site]
02063
fclose
[call site]
02064
mfdestroy
[function]
[call site]
02065
sam_hrecs_find_key
[function]
[call site]
02066
strstr
[call site]
02067
strncmp
[call site]
02068
hts_log
[function]
[call site]
02069
strncmp
[call site]
02070
bgzf_close
[function]
[call site]
02071
refs_load_fai
[function]
[call site]
02072
sanitise_SQ_lines
[function]
[call site]
02073
bgzf_close
[function]
[call site]
02074
refs2id
[function]
[call site]
02075
expand_cache_path
[function]
[call site]
02076
hts_log
[function]
[call site]
02077
mkdir_prefix
[function]
[call site]
02078
strrchr
[call site]
02079
is_directory
[function]
[call site]
02080
stat
[call site]
02081
mkdir
[call site]
02082
chmod
[call site]
02083
mkdir_prefix
[function]
[call site]
02084
mkdir
[call site]
02085
chmod
[call site]
02086
hts_open_tmpfile
[function]
[call site]
02087
getpid
[call site]
02088
time
[call site]
02089
clock
[call site]
02090
ks_clear
[function]
[call site]
02091
ksprintf
[function]
[call site]
02092
hopen
[function]
[call site]
02093
__errno_location
[call site]
02094
perror
[call site]
02095
hts_md5_init
[function]
[call site]
02096
hts_md5_reset
[function]
[call site]
02097
hclose_abruptly
[function]
[call site]
02098
unlink
[call site]
02099
hts_md5_update
[function]
[call site]
02100
body
[function]
[call site]
02101
body
[function]
[call site]
02102
hts_md5_final
[function]
[call site]
02103
body
[function]
[call site]
02104
body
[function]
[call site]
02105
hts_md5_destroy
[function]
[call site]
02106
hts_md5_hex
[function]
[call site]
02107
strncmp
[call site]
02108
hts_log
[function]
[call site]
02109
hclose_abruptly
[function]
[call site]
02110
unlink
[call site]
02111
hwrite
[function]
[call site]
02112
hclose
[function]
[call site]
02113
chmod
[call site]
02114
rename
[call site]
02115
__errno_location
[call site]
02116
strerror
[call site]
02117
hts_log
[function]
[call site]
02118
unlink
[call site]
02119
hts_log
[function]
[call site]
02120
hts_log
[function]
[call site]
02121
pthread_mutex_unlock
[call site]
02122
pthread_mutex_unlock
[call site]
02123
cram_ref_incr_locked
[function]
[call site]
02124
cram_ref_incr_locked
[function]
[call site]
02125
cram_ref_load
[function]
[call site]
02126
__assert_fail
[call site]
02127
__assert_fail
[call site]
02128
ref_entry_free_seq
[function]
[call site]
02129
strcmp
[call site]
02130
bgzf_close
[function]
[call site]
02131
bgzf_open_ref
[function]
[call site]
02132
load_ref_portion
[function]
[call site]
02133
bgzf_useek
[function]
[call site]
02134
hseek
[function]
[call site]
02135
bgzf_read_block
[function]
[call site]
02136
bgzf_seek_common
[function]
[call site]
02137
pthread_mutex_lock
[call site]
02138
pthread_cond_signal
[call site]
02139
hts_tpool_wake_dispatch
[function]
[call site]
02140
pthread_cond_wait
[call site]
02141
pthread_cond_signal
[call site]
02142
abort
[call site]
02143
__errno_location
[call site]
02144
pthread_mutex_unlock
[call site]
02145
pthread_mutex_unlock
[call site]
02146
hseek
[function]
[call site]
02147
bgzf_read_block
[function]
[call site]
02148
__assert_fail
[call site]
02149
perror
[call site]
02150
bgzf_read
[function]
[call site]
02151
__assert_fail
[call site]
02152
bgzf_read_block
[function]
[call site]
02153
hts_log
[function]
[call site]
02154
bgzf_htell
[function]
[call site]
02155
hts_log
[function]
[call site]
02156
bgzf_htell
[function]
[call site]
02157
perror
[call site]
02158
isspace_c
[function]
[call site]
02159
isspace_c
[function]
[call site]
02160
isspace_c
[function]
[call site]
02161
hts_log
[function]
[call site]
02162
toupper_c
[function]
[call site]
02163
toupper
[call site]
02164
pthread_mutex_unlock
[call site]
02165
pthread_mutex_unlock
[call site]
02166
cram_ref_incr_locked
[function]
[call site]
02167
pthread_mutex_unlock
[call site]
02168
pthread_mutex_unlock
[call site]
02169
pthread_mutex_unlock
[call site]
02170
pthread_mutex_unlock
[call site]
02171
strcmp
[call site]
02172
bgzf_close
[function]
[call site]
02173
bgzf_open_ref
[function]
[call site]
02174
pthread_mutex_unlock
[call site]
02175
pthread_mutex_unlock
[call site]
02176
load_ref_portion
[function]
[call site]
02177
pthread_mutex_unlock
[call site]
02178
pthread_mutex_unlock
[call site]
02179
pthread_mutex_unlock
[call site]
02180
pthread_mutex_unlock
[call site]
02181
hts_log
[function]
[call site]
02182
hts_log
[function]
[call site]
02183
pthread_mutex_lock
[call site]
02184
pthread_mutex_unlock
[call site]
02185
hts_log
[function]
[call site]
02186
hts_log
[function]
[call site]
02187
hts_log
[function]
[call site]
02188
hts_log
[function]
[call site]
02189
pthread_mutex_lock
[call site]
02190
pthread_mutex_unlock
[call site]
02191
validate_md5
[function]
[call site]
02192
sam_hrecs_find_type_id
[function]
[call site]
02193
sam_hrecs_find_key
[function]
[call site]
02194
hts_md5_init
[function]
[call site]
02195
hts_md5_update
[function]
[call site]
02196
hts_md5_final
[function]
[call site]
02197
hts_md5_destroy
[function]
[call site]
02198
hts_md5_hex
[function]
[call site]
02199
strcmp
[call site]
02200
hts_log
[function]
[call site]
02201
hts_log
[function]
[call site]
02202
cram_ref_incr
[function]
[call site]
02203
pthread_mutex_lock
[call site]
02204
cram_ref_incr_locked
[function]
[call site]
02205
pthread_mutex_unlock
[call site]
02206
cram_get_ref
[function]
[call site]
02207
validate_md5
[function]
[call site]
02208
hts_log
[function]
[call site]
02209
__assert_fail
[call site]
02210
lossy_read_names
[function]
[call site]
02211
kh_init_m_s2u64
[function]
[call site]
02212
calloc
[call site]
02213
expected_template_count
[function]
[call site]
02214
bam_aux_get
[function]
[call site]
02215
bam_aux_first
[function]
[call site]
02216
__errno_location
[call site]
02217
skip_aux
[function]
[call site]
02218
aux_type2size
[function]
[call site]
02219
memchr
[call site]
02220
aux_type2size
[function]
[call site]
02221
le_to_u32
[function]
[call site]
02222
bam_aux_next
[function]
[call site]
02223
skip_aux
[function]
[call site]
02224
__errno_location
[call site]
02225
hts_log
[function]
[call site]
02226
__errno_location
[call site]
02227
hts_log
[function]
[call site]
02228
__errno_location
[call site]
02229
bam_data_end
[function]
[call site]
02230
bam_aux2i_end
[function]
[call site]
02231
__errno_location
[call site]
02232
__errno_location
[call site]
02233
__errno_location
[call site]
02234
le_to_i16
[function]
[call site]
02235
le_to_u16
[function]
[call site]
02236
__errno_location
[call site]
02237
le_to_u16
[function]
[call site]
02238
__errno_location
[call site]
02239
le_to_i32
[function]
[call site]
02240
le_to_u32
[function]
[call site]
02241
__errno_location
[call site]
02242
le_to_u32
[function]
[call site]
02243
__errno_location
[call site]
02244
bam_aux_get
[function]
[call site]
02245
kh_put_m_s2u64
[function]
[call site]
02246
kh_resize_m_s2u64
[function]
[call site]
02247
realloc
[call site]
02248
__ac_FNV1a_hash_string
[function]
[call site]
02249
strcmp
[call site]
02250
kh_get_m_s2u64
[function]
[call site]
02251
kh_destroy_m_s2u64
[function]
[call site]
02252
cram_generate_reference
[function]
[call site]
02253
extend_ref
[function]
[call site]
02254
realloc
[call site]
02255
hts_realloc_p
[function]
[call site]
02256
hts_log
[function]
[call site]
02257
cram_add_to_ref
[function]
[call site]
02258
bam_aux_get
[function]
[call site]
02259
cram_add_to_ref_MD
[function]
[call site]
02260
bam_cigar2rlen
[function]
[call site]
02261
extend_ref
[function]
[call site]
02262
__ctype_b_loc
[call site]
02263
hts_str2uint
[function]
[call site]
02264
extend_ref
[function]
[call site]
02265
next_cigar_op
[function]
[call site]
02266
hts_log
[function]
[call site]
02267
__ctype_b_loc
[call site]
02268
extend_ref
[function]
[call site]
02269
next_cigar_op
[function]
[call site]
02270
hts_log
[function]
[call site]
02271
extend_ref
[function]
[call site]
02272
next_cigar_op
[function]
[call site]
02273
hts_log
[function]
[call site]
02274
extend_ref
[function]
[call site]
02275
hts_log
[function]
[call site]
02276
hts_log
[function]
[call site]
02277
pthread_mutex_lock
[call site]
02278
pthread_mutex_unlock
[call site]
02279
pthread_mutex_lock
[call site]
02280
pthread_mutex_unlock
[call site]
02281
cram_ref_decr
[function]
[call site]
02282
pthread_mutex_lock
[call site]
02283
cram_ref_decr_locked
[function]
[call site]
02284
__assert_fail
[call site]
02285
ref_entry_free_seq
[function]
[call site]
02286
pthread_mutex_unlock
[call site]
02287
cram_get_ref
[function]
[call site]
02288
hts_log
[function]
[call site]
02289
validate_md5
[function]
[call site]
02290
process_one_read
[function]
[call site]
02291
bam_aux_get
[function]
[call site]
02292
bam_aux_get
[function]
[call site]
02293
cram_stats_add
[function]
[call site]
02294
kh_init_m_i2i
[function]
[call site]
02295
kh_put_m_i2i
[function]
[call site]
02296
kh_resize_m_i2i
[function]
[call site]
02297
cram_stats_add
[function]
[call site]
02298
cram_stats_add
[function]
[call site]
02299
block_grow
[function]
[call site]
02300
block_resize
[function]
[call site]
02301
block_resize_exact
[function]
[call site]
02302
realloc
[call site]
02303
block_grow
[function]
[call site]
02304
nibble2base
[function]
[call site]
02305
hts_log
[function]
[call site]
02306
hts_realloc_p
[function]
[call site]
02307
hts_log
[function]
[call site]
02308
kputuw
[function]
[call site]
02309
ks_resize
[function]
[call site]
02310
ks_resize
[function]
[call site]
02311
kputc
[function]
[call site]
02312
ks_resize
[function]
[call site]
02313
cram_add_substitution
[function]
[call site]
02314
cram_stats_add
[function]
[call site]
02315
cram_stats_add
[function]
[call site]
02316
cram_stats_add
[function]
[call site]
02317
block_append_char
[function]
[call site]
02318
block_grow
[function]
[call site]
02319
cram_add_feature
[function]
[call site]
02320
hts_realloc_p
[function]
[call site]
02321
cram_stats_add
[function]
[call site]
02322
cram_stats_add
[function]
[call site]
02323
cram_stats_add
[function]
[call site]
02324
cram_add_bases
[function]
[call site]
02325
cram_add_feature
[function]
[call site]
02326
cram_add_base
[function]
[call site]
02327
cram_stats_add
[function]
[call site]
02328
cram_stats_add
[function]
[call site]
02329
block_append_char
[function]
[call site]
02330
cram_add_feature
[function]
[call site]
02331
cram_add_base
[function]
[call site]
02332
kputuw
[function]
[call site]
02333
kputc_
[function]
[call site]
02334
ks_resize
[function]
[call site]
02335
kputsn
[function]
[call site]
02336
ks_resize
[function]
[call site]
02337
cram_add_deletion
[function]
[call site]
02338
cram_stats_add
[function]
[call site]
02339
cram_add_feature
[function]
[call site]
02340
cram_add_skip
[function]
[call site]
02341
cram_stats_add
[function]
[call site]
02342
cram_add_feature
[function]
[call site]
02343
cram_add_insertion
[function]
[call site]
02344
cram_stats_add
[function]
[call site]
02345
block_append
[function]
[call site]
02346
block_grow
[function]
[call site]
02347
block_append_char
[function]
[call site]
02348
block_append_char
[function]
[call site]
02349
cram_add_feature
[function]
[call site]
02350
cram_add_quality
[function]
[call site]
02351
cram_stats_add
[function]
[call site]
02352
block_append_char
[function]
[call site]
02353
cram_add_feature
[function]
[call site]
02354
cram_add_softclip
[function]
[call site]
02355
block_append
[function]
[call site]
02356
block_append_char
[function]
[call site]
02357
block_append
[function]
[call site]
02358
block_append_char
[function]
[call site]
02359
block_append_char
[function]
[call site]
02360
cram_add_feature
[function]
[call site]
02361
cram_add_quality
[function]
[call site]
02362
cram_add_quality
[function]
[call site]
02363
cram_add_hardclip
[function]
[call site]
02364
cram_stats_add
[function]
[call site]
02365
cram_add_feature
[function]
[call site]
02366
cram_add_pad
[function]
[call site]
02367
cram_stats_add
[function]
[call site]
02368
cram_add_feature
[function]
[call site]
02369
hts_log
[function]
[call site]
02370
hts_log
[function]
[call site]
02371
cram_stats_add
[function]
[call site]
02372
kputuw
[function]
[call site]
02373
cram_stats_add
[function]
[call site]
02374
cram_encode_aux
[function]
[call site]
02375
bam_data_end
[function]
[call site]
02376
hts_malloc_ps
[function]
[call site]
02377
hts_add_sat2
[function]
[call site]
02378
hts_prod_sat2
[function]
[call site]
02379
hts_malloc
[function]
[call site]
02380
hts_log
[function]
[call site]
02381
sam_hrecs_find_rg
[function]
[call site]
02382
kh_get_m_s2i
[function]
[call site]
02383
strncasecmp
[call site]
02384
hts_log
[function]
[call site]
02385
bam_aux2i_end
[function]
[call site]
02386
hts_log
[function]
[call site]
02387
block_append
[function]
[call site]
02388
kh_put_m_tagmap
[function]
[call site]
02389
kh_resize_m_tagmap
[function]
[call site]
02390
realloc
[call site]
02391
pthread_mutex_lock
[call site]
02392
kh_put_m_metrics
[function]
[call site]
02393
kh_resize_m_metrics
[function]
[call site]
02394
realloc
[call site]
02395
pthread_mutex_unlock
[call site]
02396
cram_new_metrics
[function]
[call site]
02397
kh_del_m_metrics
[function]
[call site]
02398
pthread_mutex_unlock
[call site]
02399
pthread_mutex_unlock
[call site]
02400
calloc
[call site]
02401
cram_encoder_init
[function]
[call site]
02402
cram_encoding2str
[function]
[call site]
02403
hts_log
[function]
[call site]
02404
cram_encoding2str
[function]
[call site]
02405
hts_log
[function]
[call site]
02406
abort
[call site]
02407
cram_stats_add
[function]
[call site]
02408
cram_stats_encoding
[function]
[call site]
02409
hts_realloc_p
[function]
[call site]
02410
hts_realloc_p
[function]
[call site]
02411
hts_realloc_p
[function]
[call site]
02412
hts_realloc_p
[function]
[call site]
02413
__assert_fail
[call site]
02414
cram_encoder_init
[function]
[call site]
02415
cram_stats_add
[function]
[call site]
02416
cram_stats_encoding
[function]
[call site]
02417
cram_encoder_init
[function]
[call site]
02418
cram_stats_add
[function]
[call site]
02419
cram_stats_encoding
[function]
[call site]
02420
cram_encoder_init
[function]
[call site]
02421
cram_encoder_init
[function]
[call site]
02422
hts_log
[function]
[call site]
02423
pthread_mutex_lock
[call site]
02424
pthread_mutex_unlock
[call site]
02425
cram_new_block
[function]
[call site]
02426
block_append_char
[function]
[call site]
02427
cram_new_block
[function]
[call site]
02428
block_append
[function]
[call site]
02429
cram_new_block
[function]
[call site]
02430
block_append
[function]
[call site]
02431
cram_new_block
[function]
[call site]
02432
block_append
[function]
[call site]
02433
cram_new_block
[function]
[call site]
02434
hts_log
[function]
[call site]
02435
cram_new_block
[function]
[call site]
02436
hts_log
[function]
[call site]
02437
hts_log
[function]
[call site]
02438
block_append_char
[function]
[call site]
02439
kh_put_m_s2i
[function]
[call site]
02440
kh_resize_m_s2i
[function]
[call site]
02441
__ac_FNV1a_hash_string
[function]
[call site]
02442
string_ndup
[function]
[call site]
02443
cram_stats_add
[function]
[call site]
02444
sam_hrecs_find_rg
[function]
[call site]
02445
cram_stats_add
[function]
[call site]
02446
block_grow
[function]
[call site]
02447
block_grow
[function]
[call site]
02448
cram_stats_add
[function]
[call site]
02449
kh_put_m_s2i
[function]
[call site]
02450
string_ndup
[function]
[call site]
02451
cram_stats_add
[function]
[call site]
02452
cram_stats_add
[function]
[call site]
02453
cram_stats_del
[function]
[call site]
02454
__assert_fail
[call site]
02455
kh_get_m_i2i
[function]
[call site]
02456
kh_del_m_i2i
[function]
[call site]
02457
hts_log
[function]
[call site]
02458
cram_stats_del
[function]
[call site]
02459
cram_stats_del
[function]
[call site]
02460
cram_stats_del
[function]
[call site]
02461
cram_stats_add
[function]
[call site]
02462
cram_stats_del
[function]
[call site]
02463
cram_stats_add
[function]
[call site]
02464
cram_stats_add
[function]
[call site]
02465
cram_stats_add
[function]
[call site]
02466
cram_stats_add
[function]
[call site]
02467
cram_stats_add
[function]
[call site]
02468
cram_stats_add
[function]
[call site]
02469
cram_stats_add
[function]
[call site]
02470
cram_stats_add
[function]
[call site]
02471
add_read_names
[function]
[call site]
02472
block_append
[function]
[call site]
02473
cram_stats_add
[function]
[call site]
02474
hts_prod_sat2
[function]
[call site]
02475
hts_calloc
[function]
[call site]
02476
__assert_fail
[call site]
02477
cram_ref_decr
[function]
[call site]
02478
pthread_mutex_lock
[call site]
02479
pthread_mutex_unlock
[call site]
02480
cram_stats_encoding
[function]
[call site]
02481
pthread_mutex_lock
[call site]
02482
pthread_mutex_unlock
[call site]
02483
hts_log
[function]
[call site]
02484
hts_md5_init
[function]
[call site]
02485
hts_md5_update
[function]
[call site]
02486
hts_md5_final
[function]
[call site]
02487
hts_md5_destroy
[function]
[call site]
02488
cram_stats_encoding
[function]
[call site]
02489
cram_encoder_init
[function]
[call site]
02490
cram_stats_encoding
[function]
[call site]
02491
cram_encoder_init
[function]
[call site]
02492
cram_stats_encoding
[function]
[call site]
02493
cram_encoder_init
[function]
[call site]
02494
cram_encoder_init
[function]
[call site]
02495
cram_encoder_init
[function]
[call site]
02496
cram_stats_encoding
[function]
[call site]
02497
cram_encoder_init
[function]
[call site]
02498
cram_stats_encoding
[function]
[call site]
02499
cram_encoder_init
[function]
[call site]
02500
cram_stats_encoding
[function]
[call site]
02501
cram_encoder_init
[function]
[call site]
02502
cram_stats_encoding
[function]
[call site]
02503
cram_encoder_init
[function]
[call site]
02504
cram_stats_encoding
[function]
[call site]
02505
cram_encoder_init
[function]
[call site]
02506
cram_stats_encoding
[function]
[call site]
02507
cram_encoder_init
[function]
[call site]
02508
cram_stats_encoding
[function]
[call site]
02509
cram_encoder_init
[function]
[call site]
02510
cram_stats_encoding
[function]
[call site]
02511
cram_encoder_init
[function]
[call site]
02512
cram_stats_encoding
[function]
[call site]
02513
cram_encoder_init
[function]
[call site]
02514
cram_stats_encoding
[function]
[call site]
02515
cram_encoder_init
[function]
[call site]
02516
cram_stats_encoding
[function]
[call site]
02517
cram_encoder_init
[function]
[call site]
02518
cram_stats_encoding
[function]
[call site]
02519
cram_encoder_init
[function]
[call site]
02520
cram_stats_encoding
[function]
[call site]
02521
cram_encoder_init
[function]
[call site]
02522
cram_encoder_init
[function]
[call site]
02523
cram_stats_encoding
[function]
[call site]
02524
cram_encoder_init
[function]
[call site]
02525
cram_stats_encoding
[function]
[call site]
02526
cram_encoder_init
[function]
[call site]
02527
cram_stats_encoding
[function]
[call site]
02528
cram_encoder_init
[function]
[call site]
02529
cram_stats_encoding
[function]
[call site]
02530
cram_encoder_init
[function]
[call site]
02531
cram_stats_encoding
[function]
[call site]
02532
cram_encoder_init
[function]
[call site]
02533
cram_stats_encoding
[function]
[call site]
02534
cram_encoder_init
[function]
[call site]
02535
cram_stats_encoding
[function]
[call site]
02536
cram_encoder_init
[function]
[call site]
02537
cram_stats_encoding
[function]
[call site]
02538
cram_encoder_init
[function]
[call site]
02539
cram_encoder_init
[function]
[call site]
02540
cram_encoder_init
[function]
[call site]
02541
cram_encoder_init
[function]
[call site]
02542
cram_encoder_init
[function]
[call site]
02543
hts_log
[function]
[call site]
02544
cram_encode_slice
[function]
[call site]
02545
hts_prod_sat2
[function]
[call site]
02546
hts_calloc_ps
[function]
[call site]
02547
hts_add_sat2
[function]
[call site]
02548
hts_calloc
[function]
[call site]
02549
hts_malloc_p
[function]
[call site]
02550
cram_new_block
[function]
[call site]
02551
cram_new_block
[function]
[call site]
02552
cram_new_block
[function]
[call site]
02553
block_append
[function]
[call site]
02554
cram_allocate_block
[function]
[call site]
02555
cram_new_block
[function]
[call site]
02556
cram_new_block
[function]
[call site]
02557
cram_allocate_block
[function]
[call site]
02558
cram_allocate_block
[function]
[call site]
02559
cram_encode_slice_read
[function]
[call site]
02560
hts_log
[function]
[call site]
02561
cram_free_block
[function]
[call site]
02562
cram_free_block
[function]
[call site]
02563
cram_free_block
[function]
[call site]
02564
cram_free_block
[function]
[call site]
02565
cram_compress_slice
[function]
[call site]
02566
cram_compress_block2
[function]
[call site]
02567
cram_compress_block3
[function]
[call site]
02568
pthread_mutex_lock
[call site]
02569
pthread_mutex_unlock
[call site]
02570
cram_compress_by_method
[function]
[call site]
02571
zlib_mem_deflate
[function]
[call site]
02572
deflateInit2_
[call site]
02573
hts_log
[function]
[call site]
02574
hts_log
[function]
[call site]
02575
deflate
[call site]
02576
hts_log
[function]
[call site]
02577
deflate
[call site]
02578
hts_log
[function]
[call site]
02579
deflateEnd
[call site]
02580
hts_log
[function]
[call site]
02581
BZ2_bzBuffToBuffCompress
[call site]
02582
fqz_compress
[function]
[call site]
02583
compress_block_fqz2f
[function]
[call site]
02584
fqz_pick_parameters
[function]
[call site]
02585
calloc
[call site]
02586
fqz_qual_stats
[function]
[call site]
02587
calloc
[call site]
02588
memcmp
[call site]
02589
fast_log
[function]
[call site]
02590
fast_log
[function]
[call site]
02591
fast_log
[function]
[call site]
02592
fast_log
[function]
[call site]
02593
fast_log
[function]
[call site]
02594
fast_log
[function]
[call site]
02595
fast_log
[function]
[call site]
02596
log
[call site]
02597
log
[call site]
02598
log
[call site]
02599
log
[call site]
02600
log
[call site]
02601
log
[call site]
02602
log
[call site]
02603
log
[call site]
02604
log
[call site]
02605
var_put_u32
[function]
[call site]
02606
var_put_u32_safe
[function]
[call site]
02607
fqz_store_parameters
[function]
[call site]
02608
store_array
[function]
[call site]
02609
fqz_store_parameters1
[function]
[call site]
02610
store_array
[function]
[call site]
02611
store_array
[function]
[call site]
02612
store_array
[function]
[call site]
02613
fqz_create_models
[function]
[call site]
02614
RC_SetOutput
[function]
[call site]
02615
RC_SetOutputEnd
[function]
[call site]
02616
RC_StartEncode
[function]
[call site]
02617
compress_new_read
[function]
[call site]
02618
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02619
RC_Encode
[function]
[call site]
02620
RC_ShiftLowCheck
[function]
[call site]
02621
SIMPLE_MODEL256_normalize
[function]
[call site]
02622
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02623
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02624
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02625
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02626
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02627
SIMPLE_MODEL2_normalize
[function]
[call site]
02628
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02629
memcmp
[call site]
02630
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02631
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02632
mm_prefetch
[function]
[call site]
02633
fqz_update_ctx
[function]
[call site]
02634
mm_prefetch
[function]
[call site]
02635
fqz_update_ctx
[function]
[call site]
02636
mm_prefetch
[function]
[call site]
02637
fqz_update_ctx
[function]
[call site]
02638
mm_prefetch
[function]
[call site]
02639
fqz_update_ctx
[function]
[call site]
02640
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02641
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02642
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02643
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02644
mm_prefetch
[function]
[call site]
02645
fqz_update_ctx
[function]
[call site]
02646
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02647
RC_FinishEncode
[function]
[call site]
02648
RC_ShiftLowCheck
[function]
[call site]
02649
RC_OutSize
[function]
[call site]
02650
fqz_destroy_models
[function]
[call site]
02651
fqz_free_parameters
[function]
[call site]
02652
lzma_mem_deflate
[function]
[call site]
02653
lzma_stream_buffer_bound
[call site]
02654
lzma_easy_buffer_encode
[call site]
02655
rans_compress
[function]
[call site]
02656
rans_compress_O1
[function]
[call site]
02657
rans_compress_O0
[function]
[call site]
02658
hist8
[function]
[call site]
02659
htscodecs_tls_calloc
[function]
[call site]
02660
htscodecs_tls_free
[function]
[call site]
02661
__assert_fail
[call site]
02662
RansEncSymbolInit
[function]
[call site]
02663
__assert_fail
[call site]
02664
__assert_fail
[call site]
02665
RansEncInit
[function]
[call site]
02666
RansEncInit
[function]
[call site]
02667
RansEncInit
[function]
[call site]
02668
RansEncInit
[function]
[call site]
02669
RansEncPutSymbol
[function]
[call site]
02670
RansEncPutSymbol
[function]
[call site]
02671
RansEncPutSymbol
[function]
[call site]
02672
RansEncPutSymbol
[function]
[call site]
02673
RansEncPutSymbol
[function]
[call site]
02674
RansEncPutSymbol
[function]
[call site]
02675
RansEncPutSymbol
[function]
[call site]
02676
RansEncFlush
[function]
[call site]
02677
RansEncFlush
[function]
[call site]
02678
RansEncFlush
[function]
[call site]
02679
RansEncFlush
[function]
[call site]
02680
htscodecs_tls_alloc
[function]
[call site]
02681
hist1_4
[function]
[call site]
02682
htscodecs_tls_calloc
[function]
[call site]
02683
htscodecs_tls_free
[function]
[call site]
02684
RansEncSymbolInit
[function]
[call site]
02685
__assert_fail
[call site]
02686
RansEncInit
[function]
[call site]
02687
RansEncInit
[function]
[call site]
02688
RansEncInit
[function]
[call site]
02689
RansEncInit
[function]
[call site]
02690
RansEncPutSymbol
[function]
[call site]
02691
RansEncPutSymbol4
[function]
[call site]
02692
__assert_fail
[call site]
02693
__assert_fail
[call site]
02694
__assert_fail
[call site]
02695
__assert_fail
[call site]
02696
RansEncPutSymbol
[function]
[call site]
02697
RansEncPutSymbol
[function]
[call site]
02698
RansEncPutSymbol
[function]
[call site]
02699
RansEncPutSymbol
[function]
[call site]
02700
RansEncFlush
[function]
[call site]
02701
RansEncFlush
[function]
[call site]
02702
RansEncFlush
[function]
[call site]
02703
RansEncFlush
[function]
[call site]
02704
htscodecs_tls_free
[function]
[call site]
02705
rans_compress_O0
[function]
[call site]
02706
rans_compress_4x16
[function]
[call site]
02707
rans_compress_to_4x16
[function]
[call site]
02708
rans_compress_bound_4x16
[function]
[call site]
02709
var_put_u32
[function]
[call site]
02710
rans_compress_to_4x16
[function]
[call site]
02711
realloc
[call site]
02712
var_put_u32
[function]
[call site]
02713
var_put_u32
[function]
[call site]
02714
var_put_u32
[function]
[call site]
02715
hts_pack
[function]
[call site]
02716
var_put_u32
[function]
[call site]
02717
hts_rle_encode
[function]
[call site]
02718
rle_find_syms
[function]
[call site]
02719
var_put_u32
[function]
[call site]
02720
var_put_u32
[function]
[call site]
02721
var_put_u32
[function]
[call site]
02722
rans_enc_func
[function]
[call site]
02723
pthread_once
[call site]
02724
htscodecs_tls_cpu_init
[function]
[call site]
02725
strerror
[call site]
02726
fprintf
[call site]
02727
fprintf
[call site]
02728
var_put_u32
[function]
[call site]
02729
var_put_u32
[function]
[call site]
02730
var_put_u32
[function]
[call site]
02731
rans_enc_func
[function]
[call site]
02732
arith_compress_to
[function]
[call site]
02733
arith_compress_bound
[function]
[call site]
02734
var_put_u32
[function]
[call site]
02735
var_put_u32
[function]
[call site]
02736
arith_compress_to
[function]
[call site]
02737
arith_compress_to
[function]
[call site]
02738
var_put_u32
[function]
[call site]
02739
var_put_u32
[function]
[call site]
02740
hts_pack
[function]
[call site]
02741
var_put_u32
[function]
[call site]
02742
BZ2_bzBuffToBuffCompress
[call site]
02743
arith_compress_O0_RLE
[function]
[call site]
02744
arith_compress_bound
[function]
[call site]
02745
SIMPLE_MODEL256_init
[function]
[call site]
02746
htscodecs_tls_alloc
[function]
[call site]
02747
SIMPLE_MODEL258_init
[function]
[call site]
02748
RC_SetOutput
[function]
[call site]
02749
RC_SetOutputEnd
[function]
[call site]
02750
RC_StartEncode
[function]
[call site]
02751
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02752
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02753
SIMPLE_MODEL258_normalize
[function]
[call site]
02754
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02755
RC_FinishEncode
[function]
[call site]
02756
htscodecs_tls_free
[function]
[call site]
02757
RC_OutSize
[function]
[call site]
02758
htscodecs_tls_free
[function]
[call site]
02759
arith_compress_O1_RLE
[function]
[call site]
02760
arith_compress_bound
[function]
[call site]
02761
htscodecs_tls_alloc
[function]
[call site]
02762
SIMPLE_MODEL256_init
[function]
[call site]
02763
htscodecs_tls_alloc
[function]
[call site]
02764
htscodecs_tls_free
[function]
[call site]
02765
SIMPLE_MODEL258_init
[function]
[call site]
02766
RC_SetOutput
[function]
[call site]
02767
RC_SetOutputEnd
[function]
[call site]
02768
RC_StartEncode
[function]
[call site]
02769
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02770
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02771
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02772
RC_FinishEncode
[function]
[call site]
02773
htscodecs_tls_free
[function]
[call site]
02774
htscodecs_tls_free
[function]
[call site]
02775
RC_OutSize
[function]
[call site]
02776
htscodecs_tls_free
[function]
[call site]
02777
htscodecs_tls_free
[function]
[call site]
02778
arith_compress_O1
[function]
[call site]
02779
arith_compress_bound
[function]
[call site]
02780
htscodecs_tls_alloc
[function]
[call site]
02781
SIMPLE_MODEL256_init
[function]
[call site]
02782
RC_SetOutput
[function]
[call site]
02783
RC_SetOutputEnd
[function]
[call site]
02784
RC_StartEncode
[function]
[call site]
02785
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02786
RC_FinishEncode
[function]
[call site]
02787
htscodecs_tls_free
[function]
[call site]
02788
RC_OutSize
[function]
[call site]
02789
htscodecs_tls_free
[function]
[call site]
02790
arith_compress_O0
[function]
[call site]
02791
arith_compress_bound
[function]
[call site]
02792
SIMPLE_MODEL256_init
[function]
[call site]
02793
RC_SetOutput
[function]
[call site]
02794
RC_SetOutputEnd
[function]
[call site]
02795
RC_StartEncode
[function]
[call site]
02796
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02797
RC_FinishEncode
[function]
[call site]
02798
RC_OutSize
[function]
[call site]
02799
tok3_encode_names
[function]
[call site]
02800
create_context
[function]
[call site]
02801
build_trie
[function]
[call site]
02802
calloc
[call site]
02803
pool_create
[function]
[call site]
02804
pool_alloc
[function]
[call site]
02805
new_pool
[function]
[call site]
02806
realloc
[call site]
02807
free_context
[function]
[call site]
02808
free_context
[function]
[call site]
02809
encode_name
[function]
[call site]
02810
search_trie
[function]
[call site]
02811
__ctype_b_loc
[call site]
02812
__ctype_b_loc
[call site]
02813
__ctype_b_loc
[call site]
02814
__ctype_b_loc
[call site]
02815
__ctype_b_loc
[call site]
02816
calloc
[call site]
02817
__ctype_b_loc
[call site]
02818
strlen
[call site]
02819
encode_token_dup
[function]
[call site]
02820
encode_token_int
[function]
[call site]
02821
encode_token_type
[function]
[call site]
02822
descriptor_grow
[function]
[call site]
02823
realloc
[call site]
02824
descriptor_grow
[function]
[call site]
02825
encode_token_diff
[function]
[call site]
02826
encode_token_int
[function]
[call site]
02827
encode_token_char
[function]
[call site]
02828
encode_token_type
[function]
[call site]
02829
descriptor_grow
[function]
[call site]
02830
memcmp
[call site]
02831
encode_token_match
[function]
[call site]
02832
encode_token_type
[function]
[call site]
02833
encode_token_alpha
[function]
[call site]
02834
encode_token_type
[function]
[call site]
02835
descriptor_grow
[function]
[call site]
02836
encode_token_alpha
[function]
[call site]
02837
__ctype_b_loc
[call site]
02838
__ctype_b_loc
[call site]
02839
__ctype_b_loc
[call site]
02840
memcmp
[call site]
02841
encode_token_match
[function]
[call site]
02842
encode_token_alpha
[function]
[call site]
02843
encode_token_alpha
[function]
[call site]
02844
__ctype_b_loc
[call site]
02845
encode_token_match
[function]
[call site]
02846
encode_token_int1
[function]
[call site]
02847
encode_token_type
[function]
[call site]
02848
descriptor_grow
[function]
[call site]
02849
encode_token_int1_
[function]
[call site]
02850
descriptor_grow
[function]
[call site]
02851
encode_token_int
[function]
[call site]
02852
encode_token_int1_
[function]
[call site]
02853
encode_token_int
[function]
[call site]
02854
__ctype_b_loc
[call site]
02855
__ctype_b_loc
[call site]
02856
encode_token_match
[function]
[call site]
02857
encode_token_int1
[function]
[call site]
02858
encode_token_int
[function]
[call site]
02859
encode_token_int
[function]
[call site]
02860
encode_token_match
[function]
[call site]
02861
encode_token_char
[function]
[call site]
02862
encode_token_char
[function]
[call site]
02863
encode_token_end
[function]
[call site]
02864
encode_token_type
[function]
[call site]
02865
realloc
[call site]
02866
free_context
[function]
[call site]
02867
arith_compress_bound
[function]
[call site]
02868
free_context
[function]
[call site]
02869
compress
[function]
[call site]
02870
arith_encode
[function]
[call site]
02871
arith_compress_to
[function]
[call site]
02872
var_put_u32
[function]
[call site]
02873
rans_encode
[function]
[call site]
02874
rans_compress_to_4x16
[function]
[call site]
02875
var_put_u32
[function]
[call site]
02876
free_context
[function]
[call site]
02877
memcmp
[call site]
02878
free_context
[function]
[call site]
02879
free_context
[function]
[call site]
02880
pthread_mutex_lock
[call site]
02881
pthread_mutex_unlock
[call site]
02882
pthread_mutex_unlock
[call site]
02883
cram_compress_by_method
[function]
[call site]
02884
cram_block_method2str
[function]
[call site]
02885
hts_log
[function]
[call site]
02886
pthread_mutex_lock
[call site]
02887
pthread_mutex_unlock
[call site]
02888
cram_compress_block3
[function]
[call site]
02889
cram_compress_by_method
[function]
[call site]
02890
hts_log
[function]
[call site]
02891
cram_block_method2str
[function]
[call site]
02892
hts_log
[function]
[call site]
02893
pthread_mutex_lock
[call site]
02894
pthread_mutex_unlock
[call site]
02895
cram_compress_block2
[function]
[call site]
02896
cram_compress_block2
[function]
[call site]
02897
cram_compress_block2
[function]
[call site]
02898
cram_compress_block2
[function]
[call site]
02899
cram_compress_block2
[function]
[call site]
02900
cram_compress_block2
[function]
[call site]
02901
cram_compress_block2
[function]
[call site]
02902
cram_compress_block2
[function]
[call site]
02903
cram_compress_block2
[function]
[call site]
02904
cram_compress_block2
[function]
[call site]
02905
cram_compress_block2
[function]
[call site]
02906
cram_compress_block2
[function]
[call site]
02907
cram_compress_block2
[function]
[call site]
02908
cram_compress_block2
[function]
[call site]
02909
cram_compress_block2
[function]
[call site]
02910
hts_realloc_p
[function]
[call site]
02911
cram_free_block
[function]
[call site]
02912
cram_encode_slice_header
[function]
[call site]
02913
cram_new_block
[function]
[call site]
02914
hts_malloc_pse
[function]
[call site]
02915
hts_add_sat2
[function]
[call site]
02916
hts_prod_sat2
[function]
[call site]
02917
hts_add_sat2
[function]
[call site]
02918
hts_malloc
[function]
[call site]
02919
cram_free_block
[function]
[call site]
02920
hts_log
[function]
[call site]
02921
cram_free_block
[function]
[call site]
02922
__assert_fail
[call site]
02923
cram_encode_compression_header
[function]
[call site]
02924
cram_new_block
[function]
[call site]
02925
cram_new_block
[function]
[call site]
02926
itf8_put_blk
[function]
[call site]
02927
itf8_put
[function]
[call site]
02928
block_append
[function]
[call site]
02929
itf8_put_blk
[function]
[call site]
02930
itf8_put_blk
[function]
[call site]
02931
itf8_put_blk
[function]
[call site]
02932
itf8_put_blk
[function]
[call site]
02933
itf8_put_blk
[function]
[call site]
02934
kh_destroy_map
[function]
[call site]
02935
kh_init_map
[function]
[call site]
02936
calloc
[call site]
02937
kh_put_map
[function]
[call site]
02938
kh_resize_map
[function]
[call site]
02939
realloc
[call site]
02940
__ac_FNV1a_hash_string
[function]
[call site]
02941
strcmp
[call site]
02942
kh_put_map
[function]
[call site]
02943
kh_put_map
[function]
[call site]
02944
kh_put_map
[function]
[call site]
02945
kh_put_map
[function]
[call site]
02946
kh_put_map
[function]
[call site]
02947
kh_put_map
[function]
[call site]
02948
kh_put_map
[function]
[call site]
02949
block_append
[function]
[call site]
02950
block_append_char
[function]
[call site]
02951
sub_idx
[function]
[call site]
02952
sub_idx
[function]
[call site]
02953
sub_idx
[function]
[call site]
02954
sub_idx
[function]
[call site]
02955
sub_idx
[function]
[call site]
02956
sub_idx
[function]
[call site]
02957
sub_idx
[function]
[call site]
02958
sub_idx
[function]
[call site]
02959
sub_idx
[function]
[call site]
02960
sub_idx
[function]
[call site]
02961
sub_idx
[function]
[call site]
02962
sub_idx
[function]
[call site]
02963
sub_idx
[function]
[call site]
02964
sub_idx
[function]
[call site]
02965
sub_idx
[function]
[call site]
02966
sub_idx
[function]
[call site]
02967
sub_idx
[function]
[call site]
02968
sub_idx
[function]
[call site]
02969
sub_idx
[function]
[call site]
02970
sub_idx
[function]
[call site]
02971
block_append
[function]
[call site]
02972
block_append
[function]
[call site]
02973
hts_log
[function]
[call site]
02974
block_append
[function]
[call site]
02975
block_append
[function]
[call site]
02976
block_append
[function]
[call site]
02977
hts_log
[function]
[call site]
02978
cram_free_block
[function]
[call site]
02979
hts_malloc_p
[function]
[call site]
02980
cram_ref_decr
[function]
[call site]
02981
cram_ref_decr
[function]
[call site]
02982
cram_flush_container2
[function]
[call site]
02983
htell
[function]
[call site]
02984
cram_write_container
[function]
[call site]
02985
itf8_put
[function]
[call site]
02986
crc32
[call site]
02987
hwrite
[function]
[call site]
02988
htell
[function]
[call site]
02989
cram_write_block
[function]
[call site]
02990
__assert_fail
[call site]
02991
hputc
[function]
[call site]
02992
hputc2
[function]
[call site]
02993
flush_buffer
[function]
[call site]
02994
hputc
[function]
[call site]
02995
hwrite
[function]
[call site]
02996
hwrite
[function]
[call site]
02997
hwrite
[function]
[call site]
02998
__assert_fail
[call site]
02999
crc32
[call site]
03000
crc32
[call site]
03001
crc32
[call site]
03002
int32_encode
[function]
[call site]
03003
hwrite
[function]
[call site]
03004
htell
[function]
[call site]
03005
cram_write_block
[function]
[call site]
03006
cram_write_block
[function]
[call site]
03007
htell
[function]
[call site]
03008
cram_index_slice
[function]
[call site]
03009
hts_log
[function]
[call site]
03010
cram_index_build_multiref
[function]
[call site]
03011
cram_decode_slice
[function]
[call site]
03012
cram_dependent_data_series
[function]
[call site]
03013
cram_uncompress_block
[function]
[call site]
03014
cram_uncompress_block
[function]
[call site]
03015
hts_calloc_ps
[function]
[call site]
03016
cram_codec_to_id
[function]
[call site]
03017
cram_codec_to_id
[function]
[call site]
03018
cram_codec_to_id
[function]
[call site]
03019
cram_uncompress_block
[function]
[call site]
03020
cram_codec_to_id
[function]
[call site]
03021
cram_uncompress_block
[function]
[call site]
03022
cram_codec_to_id
[function]
[call site]
03023
cram_codec_to_id
[function]
[call site]
03024
block_resize_exact
[function]
[call site]
03025
block_resize_exact
[function]
[call site]
03026
block_resize_exact
[function]
[call site]
03027
strcmp
[call site]
03028
hts_malloc_p
[function]
[call site]
03029
hts_log
[function]
[call site]
03030
cram_get_block_by_id
[function]
[call site]
03031
cram_uncompress_block
[function]
[call site]
03032
hts_log
[function]
[call site]
03033
cram_get_ref
[function]
[call site]
03034
hts_log
[function]
[call site]
03035
pthread_mutex_lock
[call site]
03036
pthread_mutex_lock
[call site]
03037
pthread_mutex_unlock
[call site]
03038
pthread_mutex_unlock
[call site]
03039
memcmp
[call site]
03040
hts_log
[function]
[call site]
03041
hts_log
[function]
[call site]
03042
hts_md5_init
[function]
[call site]
03043
hts_md5_update
[function]
[call site]
03044
hts_md5_final
[function]
[call site]
03045
hts_md5_destroy
[function]
[call site]
03046
cram_get_block_by_id
[function]
[call site]
03047
hts_md5_init
[function]
[call site]
03048
hts_md5_update
[function]
[call site]
03049
hts_md5_final
[function]
[call site]
03050
hts_md5_destroy
[function]
[call site]
03051
memcmp
[call site]
03052
sam_hdr_tid2name
[function]
[call site]
03053
hts_log
[function]
[call site]
03054
md5_print
[function]
[call site]
03055
hts_log
[function]
[call site]
03056
md5_print
[function]
[call site]
03057
hts_log
[function]
[call site]
03058
sam_hdr_find_tag_id
[function]
[call site]
03059
sam_hdr_fill_hrecs
[function]
[call site]
03060
sam_hrecs_find_type_id
[function]
[call site]
03061
sam_hrecs_find_key
[function]
[call site]
03062
kputsn
[function]
[call site]
03063
hts_log
[function]
[call site]
03064
hts_log
[function]
[call site]
03065
ks_free
[function]
[call site]
03066
ks_initialize
[function]
[call site]
03067
pthread_mutex_lock
[call site]
03068
pthread_mutex_lock
[call site]
03069
calloc
[call site]
03070
pthread_mutex_unlock
[call site]
03071
pthread_mutex_unlock
[call site]
03072
hts_log
[function]
[call site]
03073
pthread_mutex_lock
[call site]
03074
pthread_mutex_unlock
[call site]
03075
cram_get_ref
[function]
[call site]
03076
pthread_mutex_lock
[call site]
03077
pthread_mutex_unlock
[call site]
03078
pthread_mutex_lock
[call site]
03079
pthread_mutex_unlock
[call site]
03080
cram_ref_decr
[function]
[call site]
03081
pthread_mutex_lock
[call site]
03082
pthread_mutex_lock
[call site]
03083
pthread_mutex_unlock
[call site]
03084
pthread_mutex_unlock
[call site]
03085
hts_log
[function]
[call site]
03086
hts_log
[function]
[call site]
03087
pthread_mutex_lock
[call site]
03088
pthread_mutex_unlock
[call site]
03089
hts_log
[function]
[call site]
03090
cram_decode_tlen
[function]
[call site]
03091
cram_decode_tlen
[function]
[call site]
03092
cram_decode_tlen
[function]
[call site]
03093
cram_decode_aux_1_0
[function]
[call site]
03094
map_find
[function]
[call site]
03095
block_append
[function]
[call site]
03096
cram_decode_aux
[function]
[call site]
03097
strlen
[call site]
03098
map_find
[function]
[call site]
03099
block_append
[function]
[call site]
03100
aux_ele_size
[function]
[call site]
03101
hts_log
[function]
[call site]
03102
block_resize
[function]
[call site]
03103
block_resize
[function]
[call site]
03104
hts_log
[function]
[call site]
03105
cram_decode_seq
[function]
[call site]
03106
block_append
[function]
[call site]
03107
hts_realloc_p
[function]
[call site]
03108
hts_log
[function]
[call site]
03109
memchr
[call site]
03110
add_md_char
[function]
[call site]
03111
block_append_uint
[function]
[call site]
03112
block_grow
[function]
[call site]
03113
append_uint32
[function]
[call site]
03114
block_append_char
[function]
[call site]
03115
block_append_uint
[function]
[call site]
03116
add_md_char
[function]
[call site]
03117
block_append_uint
[function]
[call site]
03118
block_append_char
[function]
[call site]
03119
block_append
[function]
[call site]
03120
block_append_char
[function]
[call site]
03121
block_append
[function]
[call site]
03122
block_append_uint
[function]
[call site]
03123
block_append_uint
[function]
[call site]
03124
block_append_uint
[function]
[call site]
03125
block_append_char
[function]
[call site]
03126
block_append_uint
[function]
[call site]
03127
block_append_char
[function]
[call site]
03128
hts_log
[function]
[call site]
03129
hts_log
[function]
[call site]
03130
memchr
[call site]
03131
add_md_char
[function]
[call site]
03132
hts_realloc_p
[function]
[call site]
03133
block_append_uint
[function]
[call site]
03134
hts_realloc_p
[function]
[call site]
03135
block_append_char
[function]
[call site]
03136
block_append
[function]
[call site]
03137
hts_log
[function]
[call site]
03138
pthread_mutex_lock
[call site]
03139
cram_ref_decr
[function]
[call site]
03140
cram_ref_decr
[function]
[call site]
03141
pthread_mutex_unlock
[call site]
03142
cram_decode_slice_xref
[function]
[call site]
03143
hts_log
[function]
[call site]
03144
cram_free_block
[function]
[call site]
03145
block_resize_exact
[function]
[call site]
03146
block_resize_exact
[function]
[call site]
03147
block_resize_exact
[function]
[call site]
03148
block_resize_exact
[function]
[call site]
03149
bulk_cram_to_bam
[function]
[call site]
03150
pthread_mutex_lock
[call site]
03151
pthread_mutex_unlock
[call site]
03152
hts_realloc_p
[function]
[call site]
03153
bam_set_mempolicy
[function]
[call site]
03154
calloc
[call site]
03155
calloc
[call site]
03156
bam_set_mempolicy
[function]
[call site]
03157
cram_to_bam
[function]
[call site]
03158
strlen
[call site]
03159
append_uint64
[function]
[call site]
03160
append_uint32
[function]
[call site]
03161
append_uint32
[function]
[call site]
03162
append_sub32
[function]
[call site]
03163
append_uint32
[function]
[call site]
03164
append_sub32
[function]
[call site]
03165
append_uint64
[function]
[call site]
03166
bam_set1
[function]
[call site]
03167
bam_cigar2rqlens
[function]
[call site]
03168
hts_log
[function]
[call site]
03169
__errno_location
[call site]
03170
hts_log
[function]
[call site]
03171
__errno_location
[call site]
03172
hts_log
[function]
[call site]
03173
__errno_location
[call site]
03174
hts_log
[function]
[call site]
03175
__errno_location
[call site]
03176
subtract_check_underflow
[function]
[call site]
03177
subtract_check_underflow
[function]
[call site]
03178
subtract_check_underflow
[function]
[call site]
03179
subtract_check_underflow
[function]
[call site]
03180
subtract_check_underflow
[function]
[call site]
03181
hts_log
[function]
[call site]
03182
__errno_location
[call site]
03183
hts_add_sat2
[function]
[call site]
03184
realloc_bam_data
[function]
[call site]
03185
sam_realloc_bam_data
[function]
[call site]
03186
__errno_location
[call site]
03187
__errno_location
[call site]
03188
bam_get_mempolicy
[function]
[call site]
03189
realloc
[call site]
03190
bam_get_mempolicy
[function]
[call site]
03191
bam_set_mempolicy
[function]
[call site]
03192
hts_reg2bin
[function]
[call site]
03193
strncpy
[call site]
03194
bam_tag2cigar
[function]
[call site]
03195
bam_aux_get
[function]
[call site]
03196
__errno_location
[call site]
03197
__errno_location
[call site]
03198
__errno_location
[call site]
03199
le_to_u32
[function]
[call site]
03200
possibly_expand_bam_data
[function]
[call site]
03201
__errno_location
[call site]
03202
sam_realloc_bam_data
[function]
[call site]
03203
bam_endpos
[function]
[call site]
03204
bam_cigar2rlen
[function]
[call site]
03205
hts_reg2bin
[function]
[call site]
03206
hts_log
[function]
[call site]
03207
pthread_mutex_lock
[call site]
03208
cram_ref_decr
[function]
[call site]
03209
pthread_mutex_unlock
[call site]
03210
snprintf
[call site]
03211
strlen
[call site]
03212
bgzf_write
[function]
[call site]
03213
hwrite
[function]
[call site]
03214
__assert_fail
[call site]
03215
lazy_flush
[function]
[call site]
03216
mt_queue
[function]
[call site]
03217
bgzf_flush
[function]
[call site]
03218
snprintf
[call site]
03219
strlen
[call site]
03220
bgzf_write
[function]
[call site]
03221
snprintf
[call site]
03222
strlen
[call site]
03223
bgzf_write
[function]
[call site]
03224
__errno_location
[call site]
03225
hts_tpool_dispatch2
[function]
[call site]
03226
hts_tpool_dispatch3
[function]
[call site]
03227
cram_flush_thread
[function]
[call site]
03228
cram_encode_container
[function]
[call site]
03229
hts_log
[function]
[call site]
03230
__errno_location
[call site]
03231
cram_flush_result
[function]
[call site]
03232
hts_tpool_next_result
[function]
[call site]
03233
pthread_mutex_lock
[call site]
03234
hts_tpool_next_result_locked
[function]
[call site]
03235
pthread_mutex_unlock
[call site]
03236
hts_tpool_result_data
[function]
[call site]
03237
hts_tpool_delete_result
[function]
[call site]
03238
cram_flush_container2
[function]
[call site]
03239
cram_free_slice
[function]
[call site]
03240
cram_free_slice
[function]
[call site]
03241
cram_free_container
[function]
[call site]
03242
hts_tpool_delete_result
[function]
[call site]
03243
cram_free_container
[function]
[call site]
03244
hts_usleep
[function]
[call site]
03245
cram_drain_rqueue
[function]
[call site]
03246
hts_tpool_process_flush
[function]
[call site]
03247
cram_flush_result
[function]
[call site]
03248
hts_tpool_process_destroy
[function]
[call site]
03249
pthread_mutex_destroy
[call site]
03250
pthread_mutex_destroy
[call site]
03251
pthread_mutex_destroy
[call site]
03252
pthread_mutex_destroy
[call site]
03253
cram_write_eof_block
[function]
[call site]
03254
cram_encode_compression_header
[function]
[call site]
03255
cram_write_container
[function]
[call site]
03256
cram_write_block
[function]
[call site]
03257
cram_close
[function]
[call site]
03258
free_bam_list
[function]
[call site]
03259
hclose
[function]
[call site]
03260
cram_free_file_def
[function]
[call site]
03261
sam_hdr_destroy
[function]
[call site]
03262
cram_free_container
[function]
[call site]
03263
cram_free_container
[function]
[call site]
03264
refs_free
[function]
[call site]
03265
kh_destroy_m_metrics
[function]
[call site]
03266
cram_index_free
[function]
[call site]
03267
cram_index_free_recurse
[function]
[call site]
03268
cram_index_free_recurse
[function]
[call site]
03269
hts_tpool_destroy
[function]
[call site]
03270
bgzf_close
[function]
[call site]
03271
cram_free_block
[function]
[call site]
03272
kh_destroy_map
[function]
[call site]
03273
cram_free_block
[function]
[call site]
03274
sam_state_destroy
[function]
[call site]
03275
fastq_state_destroy
[function]
[call site]
03276
kh_destroy_tag
[function]
[call site]
03277
ks_free
[function]
[call site]
03278
ks_initialize
[function]
[call site]
03279
ks_free
[function]
[call site]
03280
ks_free
[function]
[call site]
03281
regfree
[call site]
03282
bgzf_close
[function]
[call site]
03283
hclose
[function]
[call site]
03284
hts_idx_close_otf_fp
[function]
[call site]
03285
need_idx_ugly_delay_hack
[function]
[call site]
03286
idx_write_uint64
[function]
[call site]
03287
ed_is_big
[function]
[call site]
03288
ed_swap_8
[function]
[call site]
03289
bgzf_write
[function]
[call site]
03290
bgzf_close
[function]
[call site]
03291
__errno_location
[call site]
03292
sam_hdr_destroy
[function]
[call site]
03293
hts_idx_destroy
[function]
[call site]
03294
cram_index_free
[function]
[call site]
03295
kh_destroy_bin
[function]
[call site]
03296
hts_filter_free
[function]
[call site]
03297
__errno_location
[call site]
03298
view_sam
[function]
[call site]
03299
abort
[call site]
03300
hopen
[function]
[call site]
03301
hts_hopen
[function]
[call site]
03302
hclose
[function]
[call site]
03303
abort
[call site]
03304
hts_open
[function]
[call site]
03305
hts_open_format
[function]
[call site]
03306
strncpy
[call site]
03307
strchr
[call site]
03308
strchr
[call site]
03309
strchr
[call site]
03310
strstr
[call site]
03311
strdup
[call site]
03312
hopen
[function]
[call site]
03313
hts_hopen
[function]
[call site]
03314
hts_opt_apply
[function]
[call site]
03315
__errno_location
[call site]
03316
__errno_location
[call site]
03317
__errno_location
[call site]
03318
__errno_location
[call site]
03319
strerror
[call site]
03320
hts_log
[function]
[call site]
03321
hclose_abruptly
[function]
[call site]
03322
abort
[call site]
03323
sam_hdr_read
[function]
[call site]
03324
__errno_location
[call site]
03325
bam_hdr_read
[function]
[call site]
03326
bgzf_check_EOF
[function]
[call site]
03327
pthread_mutex_lock
[call site]
03328
pthread_cond_signal
[call site]
03329
hts_tpool_wake_dispatch
[function]
[call site]
03330
pthread_mutex_unlock
[call site]
03331
pthread_cond_wait
[call site]
03332
pthread_cond_signal
[call site]
03333
abort
[call site]
03334
pthread_mutex_unlock
[call site]
03335
bgzf_check_EOF_common
[function]
[call site]
03336
htell
[function]
[call site]
03337
hseek
[function]
[call site]
03338
__errno_location
[call site]
03339
hclearerr
[function]
[call site]
03340
__errno_location
[call site]
03341
hclearerr
[function]
[call site]
03342
hread
[function]
[call site]
03343
hseek
[function]
[call site]
03344
memcmp
[call site]
03345
perror
[call site]
03346
hts_log
[function]
[call site]
03347
bgzf_read
[function]
[call site]
03348
memcmp
[call site]
03349
hts_log
[function]
[call site]
03350
sam_hdr_init
[function]
[call site]
03351
bgzf_read
[function]
[call site]
03352
le_to_u32
[function]
[call site]
03353
bgzf_read
[function]
[call site]
03354
bgzf_read
[function]
[call site]
03355
ed_swap_4p
[function]
[call site]
03356
ed_swap_4
[function]
[call site]
03357
calloc
[call site]
03358
calloc
[call site]
03359
bgzf_read
[function]
[call site]
03360
ed_swap_4p
[function]
[call site]
03361
bgzf_read
[function]
[call site]
03362
realloc
[call site]
03363
bgzf_read
[function]
[call site]
03364
ed_swap_4p
[function]
[call site]
03365
hts_log
[function]
[call site]
03366
hts_log
[function]
[call site]
03367
sam_hdr_destroy
[function]
[call site]
03368
sam_hdr_sanitise
[function]
[call site]
03369
sam_hdr_destroy
[function]
[call site]
03370
hts_log
[function]
[call site]
03371
hts_log
[function]
[call site]
03372
hts_log
[function]
[call site]
03373
sam_hdr_destroy
[function]
[call site]
03374
realloc
[call site]
03375
sam_hdr_destroy
[function]
[call site]
03376
sam_hdr_dup
[function]
[call site]
03377
sam_hdr_init
[function]
[call site]
03378
calloc
[call site]
03379
calloc
[call site]
03380
strdup
[call site]
03381
sam_hdr_dup_sdict
[function]
[call site]
03382
kh_init_s2i
[function]
[call site]
03383
kh_get_s2i
[function]
[call site]
03384
kh_put_s2i
[function]
[call site]
03385
kh_destroy_s2i
[function]
[call site]
03386
sam_hrecs_rebuild_text
[function]
[call site]
03387
kputsn
[function]
[call site]
03388
sam_hrecs_rebuild_lines
[function]
[call site]
03389
kputsn
[function]
[call site]
03390
build_header_line
[function]
[call site]
03391
kputc_
[function]
[call site]
03392
kputsn
[function]
[call site]
03393
kputc_
[function]
[call site]
03394
kputsn
[function]
[call site]
03395
kputc
[function]
[call site]
03396
ks_release
[function]
[call site]
03397
ks_release
[function]
[call site]
03398
sam_hdr_update_target_arrays
[function]
[call site]
03399
hts_malloc_ps
[function]
[call site]
03400
sam_hdr_destroy
[function]
[call site]
03401
sam_hdr_sanitise
[function]
[call site]
03402
sam_hdr_create
[function]
[call site]
03403
sam_hdr_init
[function]
[call site]
03404
sam_hdr_build_from_sam_file
[function]
[call site]
03405
sam_hrecs_new
[function]
[call site]
03406
hts_getline
[function]
[call site]
03407
hts_log
[function]
[call site]
03408
abort
[call site]
03409
kgetline2
[function]
[call site]
03410
ks_resize
[function]
[call site]
03411
hgetln_wrapper
[function]
[call site]
03412
hgetln
[function]
[call site]
03413
herrno
[function]
[call site]
03414
__errno_location
[call site]
03415
bgzf_getline
[function]
[call site]
03416
bgzf_read_block
[function]
[call site]
03417
memchr
[call site]
03418
ks_expand
[function]
[call site]
03419
bgzf_htell
[function]
[call site]
03420
abort
[call site]
03421
isalpha_c
[function]
[call site]
03422
sam_hrecs_error
[function]
[call site]
03423
strncmp
[call site]
03424
kputc
[function]
[call site]
03425
valid_sam_header_type
[function]
[call site]
03426
hts_log
[function]
[call site]
03427
warn_if_known_stderr
[function]
[call site]
03428
sam_hrecs_parse_single_line
[function]
[call site]
03429
TYPEKEY
[function]
[call site]
03430
kputsn
[function]
[call site]
03431
kputc
[function]
[call site]
03432
bgzf_peek
[function]
[call site]
03433
bgzf_read_block
[function]
[call site]
03434
hts_log
[function]
[call site]
03435
hpeek
[function]
[call site]
03436
strstr
[call site]
03437
hopen
[function]
[call site]
03438
khgetline
[function]
[call site]
03439
kgetline
[function]
[call site]
03440
ks_resize
[function]
[call site]
03441
strlen
[call site]
03442
hgets_wrapper
[function]
[call site]
03443
hgets
[function]
[call site]
03444
strchr
[call site]
03445
strtoll
[call site]
03446
kputs
[function]
[call site]
03447
kputsn
[function]
[call site]
03448
kputs
[function]
[call site]
03449
kputll
[function]
[call site]
03450
kputc
[function]
[call site]
03451
sam_hrecs_parse_single_line
[function]
[call site]
03452
ks_free
[function]
[call site]
03453
hclose
[function]
[call site]
03454
hts_log
[function]
[call site]
03455
kh_grow_to_fit_m_s2i
[function]
[call site]
03456
hts_realloc_p
[function]
[call site]
03457
sam_hrecs_update_hashes
[function]
[call site]
03458
kputsn
[function]
[call site]
03459
ks_release
[function]
[call site]
03460
sam_hdr_update_target_arrays
[function]
[call site]
03461
ks_free
[function]
[call site]
03462
sam_hdr_destroy
[function]
[call site]
03463
sam_hdr_destroy
[function]
[call site]
03464
sam_hdr_sanitise
[function]
[call site]
03465
sam_hdr_init
[function]
[call site]
03466
__errno_location
[call site]
03467
__errno_location
[call site]
03468
sam_hdr_incr_ref
[function]
[call site]
03469
hts_close_or_abort
[function]
[call site]
03470
hts_close
[function]
[call site]
03471
abort
[call site]
03472
hts_close
[function]
[call site]
03473
hts_close
[function]
[call site]
03474
sam_hdr_count_lines
[function]
[call site]
03475
sam_hdr_fill_hrecs
[function]
[call site]
03476
sam_hrecs_find_type_id
[function]
[call site]
03477
sam_hdr_write
[function]
[call site]
03478
__errno_location
[call site]
03479
bam_hdr_write
[function]
[call site]
03480
sam_hrecs_rebuild_text
[function]
[call site]
03481
hts_log
[function]
[call site]
03482
hts_log
[function]
[call site]
03483
hts_log
[function]
[call site]
03484
hts_log
[function]
[call site]
03485
hts_log
[function]
[call site]
03486
hts_log
[function]
[call site]
03487
bgzf_write
[function]
[call site]
03488
ed_swap_4
[function]
[call site]
03489
bgzf_write
[function]
[call site]
03490
bgzf_write
[function]
[call site]
03491
ed_swap_4
[function]
[call site]
03492
bgzf_write
[function]
[call site]
03493
bgzf_write
[function]
[call site]
03494
bgzf_write
[function]
[call site]
03495
bgzf_write
[function]
[call site]
03496
strlen
[call site]
03497
ed_swap_4
[function]
[call site]
03498
bgzf_write
[function]
[call site]
03499
bgzf_write
[function]
[call site]
03500
bgzf_write
[function]
[call site]
03501
ed_swap_4
[function]
[call site]
03502
bgzf_write
[function]
[call site]
03503
bgzf_write
[function]
[call site]
03504
bgzf_flush
[function]
[call site]
03505
cram_set_header2
[function]
[call site]
03506
sam_hdr_destroy
[function]
[call site]
03507
sam_hdr_dup
[function]
[call site]
03508
refs_from_header
[function]
[call site]
03509
cram_load_reference
[function]
[call site]
03510
cram_write_SAM_hdr
[function]
[call site]
03511
cram_write_file_def
[function]
[call site]
03512
hwrite
[function]
[call site]
03513
sam_hrecs_find_rg
[function]
[call site]
03514
sam_hdr_add_line
[function]
[call site]
03515
sam_hdr_fill_hrecs
[function]
[call site]
03516
sam_hrecs_vadd
[function]
[call site]
03517
rebuild_target_arrays
[function]
[call site]
03518
redact_header_text
[function]
[call site]
03519
refs_from_header
[function]
[call site]
03520
refs2id
[function]
[call site]
03521
sam_hrecs_find_type_id
[function]
[call site]
03522
sam_hrecs_find_key
[function]
[call site]
03523
cram_get_ref
[function]
[call site]
03524
hts_log
[function]
[call site]
03525
hts_log
[function]
[call site]
03526
hts_log
[function]
[call site]
03527
pthread_mutex_lock
[call site]
03528
pthread_mutex_unlock
[call site]
03529
hts_md5_init
[function]
[call site]
03530
hts_md5_update
[function]
[call site]
03531
hts_md5_final
[function]
[call site]
03532
hts_md5_destroy
[function]
[call site]
03533
cram_ref_decr
[function]
[call site]
03534
hts_md5_hex
[function]
[call site]
03535
sam_hdr_update_line
[function]
[call site]
03536
sam_hdr_fill_hrecs
[function]
[call site]
03537
sam_hrecs_find_type_id
[function]
[call site]
03538
check_for_name_update
[function]
[call site]
03539
TYPEKEY
[function]
[call site]
03540
TYPEKEY
[function]
[call site]
03541
TYPEKEY
[function]
[call site]
03542
sam_hrecs_find_key
[function]
[call site]
03543
__assert_fail
[call site]
03544
strcmp
[call site]
03545
strcmp
[call site]
03546
kh_get_m_s2i
[function]
[call site]
03547
hts_log
[function]
[call site]
03548
TYPEKEY
[function]
[call site]
03549
hts_log
[function]
[call site]
03550
sam_hrecs_vupdate
[function]
[call site]
03551
kh_get_m_s2i
[function]
[call site]
03552
sam_hrecs_find_key
[function]
[call site]
03553
__assert_fail
[call site]
03554
__assert_fail
[call site]
03555
__assert_fail
[call site]
03556
kh_del_m_s2i
[function]
[call site]
03557
kh_put_m_s2i
[function]
[call site]
03558
hts_log
[function]
[call site]
03559
TYPEKEY
[function]
[call site]
03560
sam_hrecs_update_hashes
[function]
[call site]
03561
rebuild_target_arrays
[function]
[call site]
03562
redact_header_text
[function]
[call site]
03563
full_path
[function]
[call site]
03564
strlen
[call site]
03565
hisremote
[function]
[call site]
03566
hts_log
[function]
[call site]
03567
strncpy
[call site]
03568
toupper_c
[function]
[call site]
03569
strncpy
[call site]
03570
getcwd
[call site]
03571
strlen
[call site]
03572
strncpy
[call site]
03573
snprintf
[call site]
03574
sam_hdr_update_line
[function]
[call site]
03575
sam_hdr_length
[function]
[call site]
03576
sam_hdr_rebuild
[function]
[call site]
03577
rebuild_target_arrays
[function]
[call site]
03578
hts_log
[function]
[call site]
03579
sam_hdr_link_pg
[function]
[call site]
03580
sam_hdr_fill_hrecs
[function]
[call site]
03581
hts_realloc_p
[function]
[call site]
03582
calloc
[call site]
03583
__assert_fail
[call site]
03584
kh_get_m_s2i
[function]
[call site]
03585
hts_log
[function]
[call site]
03586
hts_log
[function]
[call site]
03587
redact_header_text
[function]
[call site]
03588
hts_log
[function]
[call site]
03589
sam_hrecs_rebuild_text
[function]
[call site]
03590
ks_free
[function]
[call site]
03591
ks_len
[function]
[call site]
03592
ks_release
[function]
[call site]
03593
hts_log
[function]
[call site]
03594
int32_encode
[function]
[call site]
03595
sam_hdr_str
[function]
[call site]
03596
sam_hdr_rebuild
[function]
[call site]
03597
hwrite
[function]
[call site]
03598
cram_new_block
[function]
[call site]
03599
cram_new_container
[function]
[call site]
03600
calloc
[call site]
03601
calloc
[call site]
03602
cram_new_compression_header
[function]
[call site]
03603
calloc
[call site]
03604
cram_new_block
[function]
[call site]
03605
kh_init_m_s2i
[function]
[call site]
03606
cram_free_block
[function]
[call site]
03607
string_pool_create
[function]
[call site]
03608
kh_destroy_m_s2i
[function]
[call site]
03609
cram_free_block
[function]
[call site]
03610
cram_stats_create
[function]
[call site]
03611
calloc
[call site]
03612
kh_init_m_tagmap
[function]
[call site]
03613
calloc
[call site]
03614
cram_free_block
[function]
[call site]
03615
cram_free_container
[function]
[call site]
03616
int32_put_blk
[function]
[call site]
03617
block_append
[function]
[call site]
03618
sam_hdr_str
[function]
[call site]
03619
block_append
[function]
[call site]
03620
cram_compress_block
[function]
[call site]
03621
cram_compress_block2
[function]
[call site]
03622
cram_free_block
[function]
[call site]
03623
cram_free_container
[function]
[call site]
03624
calloc
[call site]
03625
cram_free_block
[function]
[call site]
03626
cram_free_container
[function]
[call site]
03627
block_append
[function]
[call site]
03628
cram_write_container
[function]
[call site]
03629
cram_free_block
[function]
[call site]
03630
cram_free_container
[function]
[call site]
03631
cram_write_block
[function]
[call site]
03632
cram_free_block
[function]
[call site]
03633
cram_free_container
[function]
[call site]
03634
block_resize
[function]
[call site]
03635
cram_write_block
[function]
[call site]
03636
cram_free_block
[function]
[call site]
03637
cram_free_container
[function]
[call site]
03638
cram_free_block
[function]
[call site]
03639
cram_free_container
[function]
[call site]
03640
hflush
[function]
[call site]
03641
sam_hrecs_rebuild_text
[function]
[call site]
03642
strstr
[call site]
03643
bgzf_write
[function]
[call site]
03644
hwrite
[function]
[call site]
03645
kputsn
[function]
[call site]
03646
kputs
[function]
[call site]
03647
kputsn
[function]
[call site]
03648
kputw
[function]
[call site]
03649
kputc
[function]
[call site]
03650
bgzf_write
[function]
[call site]
03651
hwrite
[function]
[call site]
03652
bgzf_flush
[function]
[call site]
03653
hflush
[function]
[call site]
03654
sam_hdr_dup
[function]
[call site]
03655
sam_hdr_destroy
[function]
[call site]
03656
bam_init1
[function]
[call site]
03657
calloc
[call site]
03658
sam_read1
[function]
[call site]
03659
sam_read1_bam
[function]
[call site]
03660
bam_read1
[function]
[call site]
03661
bgzf_read_small
[function]
[call site]
03662
bgzf_read
[function]
[call site]
03663
ed_swap_4p
[function]
[call site]
03664
bgzf_read
[function]
[call site]
03665
le_to_i32
[function]
[call site]
03666
le_to_u32
[function]
[call site]
03667
le_to_u32
[function]
[call site]
03668
le_to_u32
[function]
[call site]
03669
le_to_u32
[function]
[call site]
03670
le_to_i32
[function]
[call site]
03671
le_to_i32
[function]
[call site]
03672
realloc_bam_data
[function]
[call site]
03673
bgzf_read_small
[function]
[call site]
03674
fixup_missing_qname_nul
[function]
[call site]
03675
realloc_bam_data
[function]
[call site]
03676
bgzf_read_small
[function]
[call site]
03677
swap_data
[function]
[call site]
03678
ed_swap_4p
[function]
[call site]
03679
bam_tag2cigar
[function]
[call site]
03680
bam_cigar2rqlens
[function]
[call site]
03681
hts_reg2bin
[function]
[call site]
03682
hts_log
[function]
[call site]
03683
__errno_location
[call site]
03684
sam_read1_cram
[function]
[call site]
03685
cram_get_bam_seq
[function]
[call site]
03686
cram_get_seq
[function]
[call site]
03687
pthread_mutex_lock
[call site]
03688
pthread_mutex_unlock
[call site]
03689
cram_next_slice
[function]
[call site]
03690
cram_first_slice
[function]
[call site]
03691
cram_free_container
[function]
[call site]
03692
cram_read_container
[function]
[call site]
03693
cram_seek
[function]
[call site]
03694
cram_free_container
[function]
[call site]
03695
cram_read_container
[function]
[call site]
03696
cram_read_block
[function]
[call site]
03697
cram_decode_compression_header
[function]
[call site]
03698
calloc
[call site]
03699
cram_uncompress_block
[function]
[call site]
03700
hts_malloc_p
[function]
[call site]
03701
kh_init_map
[function]
[call site]
03702
cram_free_compression_header
[function]
[call site]
03703
cram_free_compression_header
[function]
[call site]
03704
kh_put_map
[function]
[call site]
03705
cram_free_compression_header
[function]
[call site]
03706
kh_put_map
[function]
[call site]
03707
cram_free_compression_header
[function]
[call site]
03708
kh_put_map
[function]
[call site]
03709
cram_free_compression_header
[function]
[call site]
03710
kh_put_map
[function]
[call site]
03711
cram_free_compression_header
[function]
[call site]
03712
cram_free_compression_header
[function]
[call site]
03713
kh_put_map
[function]
[call site]
03714
cram_free_compression_header
[function]
[call site]
03715
cram_decode_TD
[function]
[call site]
03716
cram_new_block
[function]
[call site]
03717
hts_log
[function]
[call site]
03718
cram_free_block
[function]
[call site]
03719
cram_free_block
[function]
[call site]
03720
cram_free_block
[function]
[call site]
03721
block_append
[function]
[call site]
03722
block_append_char
[function]
[call site]
03723
calloc
[call site]
03724
cram_free_block
[function]
[call site]
03725
cram_free_block
[function]
[call site]
03726
cram_free_compression_header
[function]
[call site]
03727
kh_put_map
[function]
[call site]
03728
cram_free_compression_header
[function]
[call site]
03729
hts_log
[function]
[call site]
03730
cram_free_compression_header
[function]
[call site]
03731
cram_free_compression_header
[function]
[call site]
03732
cram_free_compression_header
[function]
[call site]
03733
hts_log
[function]
[call site]
03734
hts_log
[function]
[call site]
03735
cram_decoder_init
[function]
[call site]
03736
cram_encoding2str
[function]
[call site]
03737
hts_log
[function]
[call site]
03738
cram_free_compression_header
[function]
[call site]
03739
cram_free_compression_header
[function]
[call site]
03740
cram_free_compression_header
[function]
[call site]
03741
cram_free_compression_header
[function]
[call site]
03742
cram_decoder_init
[function]
[call site]
03743
cram_free_compression_header
[function]
[call site]
03744
cram_free_compression_header
[function]
[call site]
03745
sam_hrecs_sort_order
[function]
[call site]
03746
TYPEKEY
[function]
[call site]
03747
kh_get_sam_hrecs_t
[function]
[call site]
03748
strcmp
[call site]
03749
strcmp
[call site]
03750
strcmp
[call site]
03751
strcmp
[call site]
03752
hts_log
[function]
[call site]
03753
pthread_mutex_lock
[call site]
03754
pthread_mutex_unlock
[call site]
03755
cram_free_slice
[function]
[call site]
03756
cram_free_container
[function]
[call site]
03757
cram_read_container
[function]
[call site]
03758
cram_free_container
[function]
[call site]
03759
cram_free_container
[function]
[call site]
03760
cram_free_container
[function]
[call site]
03761
cram_free_container
[function]
[call site]
03762
hseek
[function]
[call site]
03763
cram_read_block
[function]
[call site]
03764
cram_decode_compression_header
[function]
[call site]
03765
sam_hrecs_sort_order
[function]
[call site]
03766
pthread_mutex_lock
[call site]
03767
pthread_mutex_unlock
[call site]
03768
cram_free_container
[function]
[call site]
03769
cram_read_slice
[function]
[call site]
03770
cram_read_block
[function]
[call site]
03771
calloc
[call site]
03772
cram_decode_slice_header
[function]
[call site]
03773
cram_uncompress_block
[function]
[call site]
03774
calloc
[call site]
03775
hts_malloc_p
[function]
[call site]
03776
cram_content_type2str
[function]
[call site]
03777
hts_log
[function]
[call site]
03778
hts_log
[function]
[call site]
03779
calloc
[call site]
03780
cram_read_block
[function]
[call site]
03781
calloc
[call site]
03782
hts_malloc_p
[function]
[call site]
03783
cram_new_block
[function]
[call site]
03784
cram_new_block
[function]
[call site]
03785
cram_new_block
[function]
[call site]
03786
cram_new_block
[function]
[call site]
03787
cram_new_block
[function]
[call site]
03788
cram_new_block
[function]
[call site]
03789
cram_free_block
[function]
[call site]
03790
cram_free_slice
[function]
[call site]
03791
cram_free_slice
[function]
[call site]
03792
cram_free_slice
[function]
[call site]
03793
cram_free_slice
[function]
[call site]
03794
cram_decode_slice_mt
[function]
[call site]
03795
cram_decode_slice
[function]
[call site]
03796
hts_tpool_process_sz
[function]
[call site]
03797
pthread_mutex_lock
[call site]
03798
pthread_mutex_unlock
[call site]
03799
__errno_location
[call site]
03800
__errno_location
[call site]
03801
hts_tpool_dispatch2
[function]
[call site]
03802
cram_decode_slice_thread
[function]
[call site]
03803
cram_decode_slice
[function]
[call site]
03804
__errno_location
[call site]
03805
__errno_location
[call site]
03806
hts_log
[function]
[call site]
03807
cram_free_slice
[function]
[call site]
03808
hts_tpool_process_len
[function]
[call site]
03809
pthread_mutex_lock
[call site]
03810
pthread_mutex_unlock
[call site]
03811
hts_tpool_process_qsize
[function]
[call site]
03812
hts_tpool_process_empty
[function]
[call site]
03813
hts_tpool_next_result_wait
[function]
[call site]
03814
hts_tpool_result_data
[function]
[call site]
03815
hts_log
[function]
[call site]
03816
hts_tpool_result_data
[function]
[call site]
03817
hts_log
[function]
[call site]
03818
hts_tpool_delete_result
[function]
[call site]
03819
hts_tpool_delete_result
[function]
[call site]
03820
cram_free_slice
[function]
[call site]
03821
cram_free_slice
[function]
[call site]
03822
bam_get_mempolicy
[function]
[call site]
03823
bam_copy1
[function]
[call site]
03824
realloc_bam_data
[function]
[call site]
03825
bam_set_mempolicy
[function]
[call site]
03826
cram_to_bam
[function]
[call site]
03827
cram_eof
[function]
[call site]
03828
sam_read1_sam
[function]
[call site]
03829
sam_parse1
[function]
[call site]
03830
strchr
[call site]
03831
hts_log
[function]
[call site]
03832
hts_log
[function]
[call site]
03833
possibly_expand_bam_data
[function]
[call site]
03834
parse_sam_flag
[function]
[call site]
03835
hts_str2uint
[function]
[call site]
03836
strtoul
[call site]
03837
strchr
[call site]
03838
strcmp
[call site]
03839
hts_log
[function]
[call site]
03840
bam_name2id
[function]
[call site]
03841
sam_hdr_name2tid
[function]
[call site]
03842
sam_hdr_fill_hrecs
[function]
[call site]
03843
kh_get_m_s2i
[function]
[call site]
03844
hts_log
[function]
[call site]
03845
hts_strprint
[function]
[call site]
03846
isprint_c
[function]
[call site]
03847
__ctype_b_loc
[call site]
03848
strcpy
[call site]
03849
snprintf
[call site]
03850
hts_log
[function]
[call site]
03851
hts_str2uint
[function]
[call site]
03852
hts_log
[function]
[call site]
03853
hts_str2uint
[function]
[call site]
03854
bam_parse_cigar
[function]
[call site]
03855
hts_log
[function]
[call site]
03856
read_ncigar
[function]
[call site]
03857
isdigit_c
[function]
[call site]
03858
hts_log
[function]
[call site]
03859
hts_log
[function]
[call site]
03860
possibly_expand_bam_data
[function]
[call site]
03861
hts_log
[function]
[call site]
03862
parse_cigar
[function]
[call site]
03863
hts_str2uint
[function]
[call site]
03864
hts_log
[function]
[call site]
03865
hts_log
[function]
[call site]
03866
hts_log
[function]
[call site]
03867
bam_cigar2rlen
[function]
[call site]
03868
strchr
[call site]
03869
hts_log
[function]
[call site]
03870
hts_reg2bin
[function]
[call site]
03871
strchr
[call site]
03872
strcmp
[call site]
03873
strcmp
[call site]
03874
bam_name2id
[function]
[call site]
03875
hts_log
[function]
[call site]
03876
hts_strprint
[function]
[call site]
03877
hts_log
[function]
[call site]
03878
hts_str2uint
[function]
[call site]
03879
hts_log
[function]
[call site]
03880
hts_str2int
[function]
[call site]
03881
hts_log
[function]
[call site]
03882
strchr
[call site]
03883
strcmp
[call site]
03884
hts_log
[function]
[call site]
03885
bam_cigar2qlen
[function]
[call site]
03886
hts_log
[function]
[call site]
03887
possibly_expand_bam_data
[function]
[call site]
03888
possibly_expand_bam_data
[function]
[call site]
03889
hts_log
[function]
[call site]
03890
hts_log
[function]
[call site]
03891
aux_parse
[function]
[call site]
03892
hts_log
[function]
[call site]
03893
isspace_c
[function]
[call site]
03894
hts_log
[function]
[call site]
03895
isspace_c
[function]
[call site]
03896
isspace_c
[function]
[call site]
03897
kh_get_tag
[function]
[call site]
03898
possibly_expand_bam_data
[function]
[call site]
03899
isspace_c
[function]
[call site]
03900
hts_log
[function]
[call site]
03901
possibly_expand_bam_data
[function]
[call site]
03902
hts_str2int
[function]
[call site]
03903
i16_to_le
[function]
[call site]
03904
u16_to_le
[function]
[call site]
03905
i32_to_le
[function]
[call site]
03906
u32_to_le
[function]
[call site]
03907
hts_str2uint
[function]
[call site]
03908
u16_to_le
[function]
[call site]
03909
u32_to_le
[function]
[call site]
03910
strtod
[call site]
03911
float_to_le
[function]
[call site]
03912
u32_to_le
[function]
[call site]
03913
strtod
[call site]
03914
double_to_le
[function]
[call site]
03915
u64_to_le
[function]
[call site]
03916
strchr
[call site]
03917
strlen
[call site]
03918
isspace_c
[function]
[call site]
03919
hts_log
[function]
[call site]
03920
possibly_expand_bam_data
[function]
[call site]
03921
isspace_c
[function]
[call site]
03922
hts_log
[function]
[call site]
03923
sam_parse_B_vals
[function]
[call site]
03924
sam_parse_B_vals_r
[function]
[call site]
03925
hts_log
[function]
[call site]
03926
aux_type2size
[function]
[call site]
03927
hts_log
[function]
[call site]
03928
possibly_expand_bam_data
[function]
[call site]
03929
hts_log
[function]
[call site]
03930
sam_parse_Bc_vals
[function]
[call site]
03931
grow_B_array
[function]
[call site]
03932
__errno_location
[call site]
03933
possibly_expand_bam_data
[function]
[call site]
03934
hts_log
[function]
[call site]
03935
hts_str2int
[function]
[call site]
03936
sam_parse_BC_vals
[function]
[call site]
03937
grow_B_array
[function]
[call site]
03938
hts_str2uint
[function]
[call site]
03939
sam_parse_Bs_vals
[function]
[call site]
03940
grow_B_array
[function]
[call site]
03941
hts_str2int
[function]
[call site]
03942
i16_to_le
[function]
[call site]
03943
sam_parse_BS_vals
[function]
[call site]
03944
grow_B_array
[function]
[call site]
03945
hts_str2uint
[function]
[call site]
03946
u16_to_le
[function]
[call site]
03947
sam_parse_Bi_vals
[function]
[call site]
03948
grow_B_array
[function]
[call site]
03949
hts_str2int
[function]
[call site]
03950
i32_to_le
[function]
[call site]
03951
sam_parse_BI_vals
[function]
[call site]
03952
grow_B_array
[function]
[call site]
03953
hts_str2uint
[function]
[call site]
03954
u32_to_le
[function]
[call site]
03955
sam_parse_Bf_vals
[function]
[call site]
03956
grow_B_array
[function]
[call site]
03957
strtod
[call site]
03958
float_to_le
[function]
[call site]
03959
hts_log
[function]
[call site]
03960
i32_to_le
[function]
[call site]
03961
hts_str2int
[function]
[call site]
03962
sam_parse_B_vals_r
[function]
[call site]
03963
sam_parse_B_vals_r
[function]
[call site]
03964
sam_parse_B_vals_r
[function]
[call site]
03965
sam_parse_B_vals_r
[function]
[call site]
03966
sam_parse_B_vals_r
[function]
[call site]
03967
sam_parse_B_vals_r
[function]
[call site]
03968
hts_log
[function]
[call site]
03969
isspace_c
[function]
[call site]
03970
hts_strprint
[function]
[call site]
03971
hts_log
[function]
[call site]
03972
isspace_c
[function]
[call site]
03973
hts_log
[function]
[call site]
03974
bam_tag2cigar
[function]
[call site]
03975
sam_state_destroy
[function]
[call site]
03976
__errno_location
[call site]
03977
bgzf_seek
[function]
[call site]
03978
bgzf_seek_common
[function]
[call site]
03979
sam_hdr_fill_hrecs
[function]
[call site]
03980
pthread_create
[call site]
03981
sam_dispatcher_read
[function]
[call site]
03982
ks_resize
[function]
[call site]
03983
pthread_mutex_lock
[call site]
03984
pthread_cond_signal
[call site]
03985
pthread_mutex_unlock
[call site]
03986
hts_tpool_process_shutdown
[function]
[call site]
03987
pthread_mutex_unlock
[call site]
03988
pthread_mutex_lock
[call site]
03989
pthread_mutex_unlock
[call site]
03990
calloc
[call site]
03991
hts_malloc_ps
[function]
[call site]
03992
hts_realloc_ps
[function]
[call site]
03993
hts_add_sat2
[function]
[call site]
03994
hts_prod_sat2
[function]
[call site]
03995
hts_realloc
[function]
[call site]
03996
bgzf_read
[function]
[call site]
03997
hread
[function]
[call site]
03998
__errno_location
[call site]
03999
sam_state_err
[function]
[call site]
04000
hts_realloc_pse
[function]
[call site]
04001
hts_add_sat2
[function]
[call site]
04002
hts_prod_sat2
[function]
[call site]
04003
hts_add_sat2
[function]
[call site]
04004
hts_realloc
[function]
[call site]
04005
__assert_fail
[call site]
04006
__assert_fail
[call site]
04007
__assert_fail
[call site]
04008
ks_resize
[function]
[call site]
04009
hts_tpool_dispatch3
[function]
[call site]
04010
sam_parse_worker
[function]
[call site]
04011
pthread_mutex_lock
[call site]
04012
pthread_mutex_unlock
[call site]
04013
calloc
[call site]
04014
calloc
[call site]
04015
sam_state_err
[function]
[call site]
04016
sam_state_err
[function]
[call site]
04017
hts_realloc_p
[function]
[call site]
04018
sam_state_err
[function]
[call site]
04019
strchr
[call site]
04020
sam_parse1
[function]
[call site]
04021
__errno_location
[call site]
04022
sam_state_err
[function]
[call site]
04023
cleanup_sp_lines
[function]
[call site]
04024
__assert_fail
[call site]
04025
sam_free_sp_bams
[function]
[call site]
04026
pthread_mutex_lock
[call site]
04027
pthread_mutex_unlock
[call site]
04028
sam_free_sp_bams
[function]
[call site]
04029
cleanup_sp_lines
[function]
[call site]
04030
cleanup_sp_bams
[function]
[call site]
04031
sam_free_sp_bams
[function]
[call site]
04032
pthread_mutex_lock
[call site]
04033
pthread_mutex_unlock
[call site]
04034
pthread_mutex_unlock
[call site]
04035
hts_tpool_dispatch
[function]
[call site]
04036
sam_parse_eof
[function]
[call site]
04037
pthread_mutex_lock
[call site]
04038
pthread_cond_wait
[call site]
04039
pthread_cond_signal
[call site]
04040
pthread_mutex_unlock
[call site]
04041
hts_tpool_process_shutdown
[function]
[call site]
04042
pthread_mutex_unlock
[call site]
04043
pthread_mutex_lock
[call site]
04044
pthread_cond_signal
[call site]
04045
pthread_mutex_unlock
[call site]
04046
pthread_mutex_lock
[call site]
04047
pthread_mutex_unlock
[call site]
04048
__errno_location
[call site]
04049
sam_state_err
[function]
[call site]
04050
hts_tpool_process_shutdown
[function]
[call site]
04051
hts_log
[function]
[call site]
04052
__errno_location
[call site]
04053
pthread_mutex_lock
[call site]
04054
pthread_mutex_unlock
[call site]
04055
hts_tpool_next_result_wait
[function]
[call site]
04056
hts_tpool_result_data
[function]
[call site]
04057
hts_tpool_delete_result
[function]
[call site]
04058
pthread_mutex_lock
[call site]
04059
pthread_mutex_unlock
[call site]
04060
bam_copy1
[function]
[call site]
04061
pthread_mutex_lock
[call site]
04062
pthread_mutex_unlock
[call site]
04063
hts_getline
[function]
[call site]
04064
sam_parse1
[function]
[call site]
04065
hts_log
[function]
[call site]
04066
fastq_state_init
[function]
[call site]
04067
fastq_parse1
[function]
[call site]
04068
hts_getline
[function]
[call site]
04069
strpbrk
[call site]
04070
isspace_c
[function]
[call site]
04071
isspace_c
[function]
[call site]
04072
hts_getline
[function]
[call site]
04073
kputsn
[function]
[call site]
04074
hts_getline
[function]
[call site]
04075
kputsn
[function]
[call site]
04076
isdigit_c
[function]
[call site]
04077
regexec
[call site]
04078
hts_log
[function]
[call site]
04079
isalpha_c
[function]
[call site]
04080
bam_set1
[function]
[call site]
04081
bam_aux_append
[function]
[call site]
04082
__assert_fail
[call site]
04083
realloc_bam_data
[function]
[call site]
04084
__errno_location
[call site]
04085
isdigit_c
[function]
[call site]
04086
strtol
[call site]
04087
isdigit_c
[function]
[call site]
04088
isspace_c
[function]
[call site]
04089
bam_aux_append
[function]
[call site]
04090
aux_parse
[function]
[call site]
04091
__errno_location
[call site]
04092
__errno_location
[call site]
04093
sam_passes_filter
[function]
[call site]
04094
hts_filter_eval2
[function]
[call site]
04095
ks_free
[function]
[call site]
04096
hts_filter_eval_
[function]
[call site]
04097
expression
[function]
[call site]
04098
and_expr
[function]
[call site]
04099
eq_expr
[function]
[call site]
04100
cmp_expr
[function]
[call site]
04101
bitor_expr
[function]
[call site]
04102
bitxor_expr
[function]
[call site]
04103
bitand_expr
[function]
[call site]
04104
add_expr
[function]
[call site]
04105
mul_expr
[function]
[call site]
04106
unary_expr
[function]
[call site]
04107
ws
[function]
[call site]
04108
simple_expr
[function]
[call site]
04109
ws
[function]
[call site]
04110
expression
[function]
[call site]
04111
ws
[function]
[call site]
04112
fprintf
[call site]
04113
hts_str2dbl
[function]
[call site]
04114
ks_clear
[function]
[call site]
04118
kputsn
[function]
[call site]
04119
func_expr
[function]
[call site]
04120
strncmp
[call site]
04121
expression
[function]
[call site]
04122
expr_func_avg
[function]
[call site]
04123
strncmp
[call site]
04124
expression
[function]
[call site]
04125
ws
[function]
[call site]
04126
expression
[function]
[call site]
04127
hts_expr_val_existsT
[function]
[call site]
04128
hts_expr_val_exists
[function]
[call site]
04129
hts_expr_val_free
[function]
[call site]
04130
ks_free
[function]
[call site]
04131
strncmp
[call site]
04132
expression
[function]
[call site]
04133
hts_expr_val_existsT
[function]
[call site]
04134
strncmp
[call site]
04135
expression
[function]
[call site]
04136
exp
[call site]
04137
hts_expr_val_undef
[function]
[call site]
04138
ks_clear
[function]
[call site]
04139
strncmp
[call site]
04140
expression
[function]
[call site]
04141
expr_func_length
[function]
[call site]
04142
strncmp
[call site]
04143
expression
[function]
[call site]
04144
log
[call site]
04145
hts_expr_val_undef
[function]
[call site]
04146
strncmp
[call site]
04147
expression
[function]
[call site]
04148
expr_func_min
[function]
[call site]
04149
strncmp
[call site]
04150
expression
[function]
[call site]
04151
expr_func_max
[function]
[call site]
04152
strncmp
[call site]
04153
expression
[function]
[call site]
04154
ws
[function]
[call site]
04155
expression
[function]
[call site]
04156
hts_expr_val_exists
[function]
[call site]
04157
hts_expr_val_undef
[function]
[call site]
04158
hts_expr_val_free
[function]
[call site]
04159
pow
[call site]
04160
hts_expr_val_free
[function]
[call site]
04161
hts_expr_val_undef
[function]
[call site]
04162
strncmp
[call site]
04163
expression
[function]
[call site]
04164
sqrt
[call site]
04165
hts_expr_val_undef
[function]
[call site]
04166
ws
[function]
[call site]
04167
fprintf
[call site]
04168
hts_expr_val_exists
[function]
[call site]
04169
hts_expr_val_undef
[function]
[call site]
04170
unary_expr
[function]
[call site]
04171
hts_expr_val_exists
[function]
[call site]
04172
unary_expr
[function]
[call site]
04173
hts_expr_val_exists
[function]
[call site]
04174
hts_expr_val_undef
[function]
[call site]
04175
hts_expr_val_exists
[function]
[call site]
04176
hts_expr_val_undef
[function]
[call site]
04177
simple_expr
[function]
[call site]
04178
ws
[function]
[call site]
04179
unary_expr
[function]
[call site]
04180
hts_expr_val_exists
[function]
[call site]
04181
hts_expr_val_undef
[function]
[call site]
04182
hts_expr_val_free
[function]
[call site]
04183
hts_expr_val_undef
[function]
[call site]
04184
hts_expr_val_exists
[function]
[call site]
04185
hts_expr_val_free
[function]
[call site]
04186
ws
[function]
[call site]
04187
mul_expr
[function]
[call site]
04188
hts_expr_val_exists
[function]
[call site]
04189
hts_expr_val_free
[function]
[call site]
04190
hts_expr_val_undef
[function]
[call site]
04191
hts_expr_val_free
[function]
[call site]
04192
ws
[function]
[call site]
04193
add_expr
[function]
[call site]
04194
hts_expr_val_exists
[function]
[call site]
04195
hts_expr_val_free
[function]
[call site]
04196
hts_expr_val_free
[function]
[call site]
04197
hts_expr_val_undef
[function]
[call site]
04198
ws
[function]
[call site]
04199
bitand_expr
[function]
[call site]
04200
hts_expr_val_exists
[function]
[call site]
04201
hts_expr_val_free
[function]
[call site]
04202
hts_expr_val_free
[function]
[call site]
04203
hts_expr_val_undef
[function]
[call site]
04204
ws
[function]
[call site]
04205
bitxor_expr
[function]
[call site]
04206
hts_expr_val_exists
[function]
[call site]
04207
hts_expr_val_free
[function]
[call site]
04208
hts_expr_val_free
[function]
[call site]
04209
hts_expr_val_undef
[function]
[call site]
04210
ws
[function]
[call site]
04211
cmp_expr
[function]
[call site]
04212
hts_expr_val_exists
[function]
[call site]
04213
hts_expr_val_undef
[function]
[call site]
04214
strcmp
[call site]
04215
cmp_expr
[function]
[call site]
04216
hts_expr_val_exists
[function]
[call site]
04217
hts_expr_val_undef
[function]
[call site]
04218
strcmp
[call site]
04219
cmp_expr
[function]
[call site]
04220
hts_expr_val_exists
[function]
[call site]
04221
hts_expr_val_undef
[function]
[call site]
04222
strcmp
[call site]
04223
cmp_expr
[function]
[call site]
04224
hts_expr_val_exists
[function]
[call site]
04225
hts_expr_val_undef
[function]
[call site]
04226
strcmp
[call site]
04227
hts_expr_val_exists
[function]
[call site]
04228
hts_expr_val_undef
[function]
[call site]
04229
hts_expr_val_free
[function]
[call site]
04230
ws
[function]
[call site]
04231
eq_expr
[function]
[call site]
04232
hts_expr_val_exists
[function]
[call site]
04233
hts_expr_val_undef
[function]
[call site]
04234
strcmp
[call site]
04235
eq_expr
[function]
[call site]
04236
hts_expr_val_exists
[function]
[call site]
04237
hts_expr_val_undef
[function]
[call site]
04238
strcmp
[call site]
04239
eq_expr
[function]
[call site]
04240
hts_expr_val_free
[function]
[call site]
04241
regcomp
[call site]
04242
regerror
[call site]
04243
fprintf
[call site]
04244
hts_expr_val_free
[function]
[call site]
04245
regexec
[call site]
04246
regfree
[call site]
04247
hts_expr_val_exists
[function]
[call site]
04248
hts_expr_val_undef
[function]
[call site]
04249
hts_expr_val_free
[function]
[call site]
04250
ws
[function]
[call site]
04251
eq_expr
[function]
[call site]
04252
hts_expr_val_existsT
[function]
[call site]
04253
hts_expr_val_undef
[function]
[call site]
04254
eq_expr
[function]
[call site]
04255
hts_expr_val_existsT
[function]
[call site]
04256
hts_expr_val_undef
[function]
[call site]
04257
hts_expr_val_existsT
[function]
[call site]
04258
hts_expr_val_undef
[function]
[call site]
04259
hts_expr_val_existsT
[function]
[call site]
04260
hts_expr_val_undef
[function]
[call site]
04261
hts_expr_val_free
[function]
[call site]
04262
ws
[function]
[call site]
04263
fprintf
[call site]
04264
hts_expr_val_exists
[function]
[call site]
04265
bam_sym_lookup
[function]
[call site]
04266
memcmp
[call site]
04267
ks_clear
[function]
[call site]
04268
kputw
[function]
[call site]
04269
kputc_
[function]
[call site]
04270
kputs
[function]
[call site]
04271
kputs
[function]
[call site]
04272
memcmp
[call site]
04273
bam_endpos
[function]
[call site]
04274
memcmp
[call site]
04275
memcmp
[call site]
04276
memcmp
[call site]
04277
memcmp
[call site]
04278
memcmp
[call site]
04279
memcmp
[call site]
04280
memcmp
[call site]
04281
memcmp
[call site]
04282
memcmp
[call site]
04283
memcmp
[call site]
04284
memcmp
[call site]
04285
memcmp
[call site]
04286
memcmp
[call site]
04287
hts_log
[function]
[call site]
04288
memcmp
[call site]
04289
memcmp
[call site]
04290
bam_get_library
[function]
[call site]
04291
bam_aux_get
[function]
[call site]
04292
sam_hdr_find_tag_id
[function]
[call site]
04293
ks_clear
[function]
[call site]
04294
kputs
[function]
[call site]
04295
memcmp
[call site]
04296
memcmp
[call site]
04297
memcmp
[call site]
04298
sam_hdr_tid2name
[function]
[call site]
04299
ks_clear
[function]
[call site]
04300
kputs
[function]
[call site]
04301
memcmp
[call site]
04302
memcmp
[call site]
04303
memcmp
[call site]
04304
memcmp
[call site]
04305
memcmp
[call site]
04306
bam_cigar2qlen
[function]
[call site]
04307
memcmp
[call site]
04308
ks_clear
[function]
[call site]
04309
kputs
[function]
[call site]
04310
memcmp
[call site]
04311
ks_clear
[function]
[call site]
04312
ks_resize
[function]
[call site]
04313
memcmp
[call site]
04314
bam_cigar2rlen
[function]
[call site]
04315
memcmp
[call site]
04316
sam_hdr_tid2name
[function]
[call site]
04317
ks_clear
[function]
[call site]
04318
kputs
[function]
[call site]
04319
memcmp
[call site]
04320
sam_hdr_tid2name
[function]
[call site]
04321
ks_clear
[function]
[call site]
04322
kputs
[function]
[call site]
04323
memcmp
[call site]
04324
memcmp
[call site]
04325
ks_clear
[function]
[call site]
04326
ks_resize
[function]
[call site]
04327
nibble2base
[function]
[call site]
04328
memcmp
[call site]
04329
memcmp
[call site]
04330
bam_aux_get
[function]
[call site]
04331
ks_clear
[function]
[call site]
04332
kputs
[function]
[call site]
04333
ks_clear
[function]
[call site]
04334
kputsn
[function]
[call site]
04335
bam_aux2i
[function]
[call site]
04336
get_int_aux_val
[function]
[call site]
04337
le_to_i8
[function]
[call site]
04338
le_to_i16
[function]
[call site]
04339
le_to_u16
[function]
[call site]
04340
le_to_i32
[function]
[call site]
04341
le_to_u32
[function]
[call site]
04342
__errno_location
[call site]
04343
bam_aux2f
[function]
[call site]
04344
le_to_double
[function]
[call site]
04345
le_to_float
[function]
[call site]
04346
get_int_aux_val
[function]
[call site]
04347
hts_log
[function]
[call site]
04348
hts_log
[function]
[call site]
04349
hts_expr_val_free
[function]
[call site]
04350
hts_expr_val_free
[function]
[call site]
04351
sam_write1
[function]
[call site]
04352
bam_write_idx1
[function]
[call site]
04353
bam_write1
[function]
[call site]
04354
hts_log
[function]
[call site]
04355
__errno_location
[call site]
04356
hts_log
[function]
[call site]
04357
bgzf_flush_try
[function]
[call site]
04358
lazy_flush
[function]
[call site]
04359
ed_swap_4p
[function]
[call site]
04360
ed_swap_4p
[function]
[call site]
04361
bgzf_write_small
[function]
[call site]
04362
bgzf_write
[function]
[call site]
04363
swap_data
[function]
[call site]
04364
bgzf_write_small
[function]
[call site]
04365
bgzf_write_small
[function]
[call site]
04366
bgzf_write_small
[function]
[call site]
04367
bgzf_write_small
[function]
[call site]
04368
bam_cigar2rlen
[function]
[call site]
04369
hts_log
[function]
[call site]
04370
u32_to_le
[function]
[call site]
04371
u32_to_le
[function]
[call site]
04372
bgzf_write_small
[function]
[call site]
04373
bgzf_write_small
[function]
[call site]
04374
bgzf_write_small
[function]
[call site]
04375
u32_to_le
[function]
[call site]
04376
bgzf_write_small
[function]
[call site]
04377
bgzf_write_small
[function]
[call site]
04378
swap_data
[function]
[call site]
04379
bgzf_flush_try
[function]
[call site]
04380
hts_idx_amend_last
[function]
[call site]
04381
bam_write1
[function]
[call site]
04382
bam_endpos
[function]
[call site]
04383
bgzf_idx_push
[function]
[call site]
04384
hts_idx_push
[function]
[call site]
04385
hts_idx_check_range
[function]
[call site]
04386
hts_idx_maxpos
[function]
[call site]
04387
hts_bin_maxpos
[function]
[call site]
04388
hts_log
[function]
[call site]
04389
idx_format_name
[function]
[call site]
04390
hts_log
[function]
[call site]
04391
__errno_location
[call site]
04392
hts_realloc_p
[function]
[call site]
04393
hts_realloc_p
[function]
[call site]
04394
hts_log
[function]
[call site]
04395
hts_log
[function]
[call site]
04396
hts_log
[function]
[call site]
04397
hts_log
[function]
[call site]
04398
kh_init_bin
[function]
[call site]
04399
calloc
[call site]
04400
insert_to_l
[function]
[call site]
04401
hts_realloc_p
[function]
[call site]
04402
hts_reg2bin
[function]
[call site]
04403
insert_to_b
[function]
[call site]
04404
kh_put_bin
[function]
[call site]
04405
kh_resize_bin
[function]
[call site]
04406
realloc
[call site]
04407
calloc
[call site]
04408
kh_del_bin
[function]
[call site]
04409
hts_realloc_p
[function]
[call site]
04410
insert_to_b
[function]
[call site]
04411
insert_to_b
[function]
[call site]
04412
hts_idx_check_range
[function]
[call site]
04413
pthread_mutex_lock
[call site]
04414
hts_realloc_p
[function]
[call site]
04415
pthread_mutex_unlock
[call site]
04416
pthread_mutex_unlock
[call site]
04417
sam_hdr_tid2name
[function]
[call site]
04418
sam_hdr_tid2len
[function]
[call site]
04419
kh_get_s2i
[function]
[call site]
04420
hts_log
[function]
[call site]
04421
cram_put_bam_seq
[function]
[call site]
04422
cram_new_container
[function]
[call site]
04423
pthread_mutex_lock
[call site]
04424
pthread_mutex_unlock
[call site]
04425
hts_log
[function]
[call site]
04426
pthread_mutex_lock
[call site]
04427
hts_log
[function]
[call site]
04428
pthread_mutex_unlock
[call site]
04429
cram_next_container
[function]
[call site]
04430
cram_update_curr_slice
[function]
[call site]
04431
hts_log
[function]
[call site]
04432
cram_flush_container_mt
[function]
[call site]
04433
cram_free_slice
[function]
[call site]
04434
cram_free_container
[function]
[call site]
04435
cram_new_container
[function]
[call site]
04436
pthread_mutex_lock
[call site]
04437
pthread_mutex_unlock
[call site]
04438
cram_new_slice
[function]
[call site]
04439
calloc
[call site]
04440
calloc
[call site]
04441
hts_malloc_p
[function]
[call site]
04442
hts_malloc_p
[function]
[call site]
04443
cram_new_block
[function]
[call site]
04444
cram_new_block
[function]
[call site]
04445
cram_new_block
[function]
[call site]
04446
cram_new_block
[function]
[call site]
04447
cram_new_block
[function]
[call site]
04448
cram_new_block
[function]
[call site]
04449
string_pool_create
[function]
[call site]
04450
kh_init_m_s2i
[function]
[call site]
04451
kh_init_m_s2i
[function]
[call site]
04452
cram_free_slice
[function]
[call site]
04453
pthread_mutex_lock
[call site]
04454
hts_log
[function]
[call site]
04455
pthread_mutex_lock
[call site]
04456
calloc
[call site]
04457
pthread_mutex_unlock
[call site]
04458
pthread_mutex_lock
[call site]
04459
calloc
[call site]
04460
pthread_mutex_unlock
[call site]
04461
pthread_mutex_lock
[call site]
04462
pthread_mutex_unlock
[call site]
04463
pthread_mutex_lock
[call site]
04464
hts_realloc_p
[function]
[call site]
04465
pthread_mutex_unlock
[call site]
04466
bam_set_mempolicy
[function]
[call site]
04467
calloc
[call site]
04468
pthread_mutex_unlock
[call site]
04469
bam_set_mempolicy
[function]
[call site]
04470
pthread_mutex_unlock
[call site]
04471
bam_copy1
[function]
[call site]
04472
bam_cigar2qlen
[function]
[call site]
04473
hts_log
[function]
[call site]
04474
pthread_create
[call site]
04475
sam_dispatcher_write
[function]
[call site]
04476
hts_tpool_next_result_wait
[function]
[call site]
04477
hts_tpool_result_data
[function]
[call site]
04478
sam_state_err
[function]
[call site]
04479
bgzf_flush_try
[function]
[call site]
04480
bgzf_write
[function]
[call site]
04481
hwrite
[function]
[call site]
04482
bam_endpos
[function]
[call site]
04483
bgzf_idx_push
[function]
[call site]
04484
__errno_location
[call site]
04485
sam_state_err
[function]
[call site]
04486
sam_hdr_tid2name
[function]
[call site]
04487
sam_hdr_tid2len
[function]
[call site]
04488
hts_log
[function]
[call site]
04489
bam_endpos
[function]
[call site]
04490
hts_idx_push
[function]
[call site]
04491
__errno_location
[call site]
04492
sam_state_err
[function]
[call site]
04493
sam_hdr_tid2name
[function]
[call site]
04494
sam_hdr_tid2len
[function]
[call site]
04495
hts_log
[function]
[call site]
04496
__assert_fail
[call site]
04497
pthread_mutex_lock
[call site]
04498
pthread_mutex_unlock
[call site]
04499
bgzf_write
[function]
[call site]
04500
bgzf_flush_try
[function]
[call site]
04501
bgzf_write
[function]
[call site]
04502
hwrite
[function]
[call site]
04503
hts_tpool_delete_result
[function]
[call site]
04504
pthread_mutex_lock
[call site]
04505
pthread_mutex_unlock
[call site]
04506
sam_state_err
[function]
[call site]
04507
hts_tpool_process_shutdown
[function]
[call site]
04508
__errno_location
[call site]
04509
sam_state_err
[function]
[call site]
04510
hts_log
[function]
[call site]
04511
pthread_mutex_lock
[call site]
04512
pthread_mutex_unlock
[call site]
04513
pthread_mutex_unlock
[call site]
04514
calloc
[call site]
04515
calloc
[call site]
04516
bam_copy1
[function]
[call site]
04517
pthread_mutex_lock
[call site]
04518
pthread_mutex_unlock
[call site]
04519
hts_tpool_dispatch3
[function]
[call site]
04520
sam_format_worker
[function]
[call site]
04521
cleanup_sp_bams
[function]
[call site]
04522
cleanup_sp_lines
[function]
[call site]
04523
pthread_mutex_unlock
[call site]
04524
pthread_mutex_unlock
[call site]
04525
sam_format1
[function]
[call site]
04526
sam_format1_append
[function]
[call site]
04527
kputc
[function]
[call site]
04528
bgzf_flush_try
[function]
[call site]
04529
bgzf_write
[function]
[call site]
04530
hwrite
[function]
[call site]
04531
bam_endpos
[function]
[call site]
04532
bgzf_idx_push
[function]
[call site]
04533
sam_hdr_tid2name
[function]
[call site]
04534
sam_hdr_tid2len
[function]
[call site]
04535
hts_log
[function]
[call site]
04536
bam_endpos
[function]
[call site]
04537
hts_idx_push
[function]
[call site]
04538
sam_hdr_tid2name
[function]
[call site]
04539
sam_hdr_tid2len
[function]
[call site]
04540
hts_log
[function]
[call site]
04541
fastq_state_init
[function]
[call site]
04542
fastq_format1
[function]
[call site]
04543
kputc
[function]
[call site]
04544
kputs
[function]
[call site]
04545
bam_aux_get
[function]
[call site]
04546
kputc
[function]
[call site]
04547
isalpha_c
[function]
[call site]
04548
toupper_c
[function]
[call site]
04549
kputc
[function]
[call site]
04550
kputs
[function]
[call site]
04551
kputs
[function]
[call site]
04552
kputs
[function]
[call site]
04553
bam_aux_get
[function]
[call site]
04554
ksprintf
[function]
[call site]
04555
isupper_c
[function]
[call site]
04556
__ctype_b_loc
[call site]
04557
islower_c
[function]
[call site]
04558
__ctype_b_loc
[call site]
04559
hts_log
[function]
[call site]
04560
strlen
[call site]
04561
strlen
[call site]
04562
isalpha_c
[function]
[call site]
04563
islower_c
[function]
[call site]
04564
toupper_c
[function]
[call site]
04565
kh_get_tag
[function]
[call site]
04566
kputc_
[function]
[call site]
04567
sam_format_aux1
[function]
[call site]
04568
skip_aux
[function]
[call site]
04569
kputsn
[function]
[call site]
04570
ks_resize
[function]
[call site]
04571
kputc_
[function]
[call site]
04572
kputc_
[function]
[call site]
04573
kputc_
[function]
[call site]
04574
kputsn
[function]
[call site]
04575
kputc_
[function]
[call site]
04576
kputc_
[function]
[call site]
04577
kputc_
[function]
[call site]
04578
kputc
[function]
[call site]
04579
bgzf_flush_try
[function]
[call site]
04580
bgzf_write
[function]
[call site]
04581
hwrite
[function]
[call site]
04582
__errno_location
[call site]
04583
bam_destroy1
[function]
[call site]
04584
sam_hdr_destroy
[function]
[call site]
04585
hts_close_or_abort
[function]
[call site]
04586
hts_close
[function]
[call site]
04587
hts_close
[function]
[call site]
04588
view_sam
[function]
[call site]
04589
view_sam
[function]
[call site]
04590
view_vcf
[function]
[call site]
04591
abort
[call site]
04592
hopen
[function]
[call site]
04593
hts_hopen
[function]
[call site]
04594
hclose
[function]
[call site]
04595
abort
[call site]
04596
hts_open
[function]
[call site]
04597
abort
[call site]
04598
bcf_hdr_read
[function]
[call site]
04599
vcf_hdr_read
[function]
[call site]
04600
bcf_hdr_init
[function]
[call site]
04601
calloc
[call site]
04602
kh_init_vdict
[function]
[call site]
04603
calloc
[call site]
04604
kh_resize_vdict
[function]
[call site]
04605
realloc
[call site]
04606
__ac_FNV1a_hash_string
[function]
[call site]
04607
calloc
[call site]
04608
kh_init_hdict
[function]
[call site]
04609
strchr
[call site]
04610
bcf_hdr_append
[function]
[call site]
04611
bcf_hdr_parse_line
[function]
[call site]
04612
calloc
[call site]
04613
hts_malloc_ps
[function]
[call site]
04614
hts_malloc_p
[function]
[call site]
04615
isalpha_c
[function]
[call site]
04616
isalnum_c
[function]
[call site]
04617
bcf_hrec_add_key
[function]
[call site]
04618
__assert_fail
[call site]
04619
hts_realloc_p
[function]
[call site]
04620
hts_realloc_p
[function]
[call site]
04621
hts_malloc_ps
[function]
[call site]
04622
is_escaped
[function]
[call site]
04623
hts_strprint
[function]
[call site]
04624
hts_log
[function]
[call site]
04625
bcf_hrec_set_val
[function]
[call site]
04626
__errno_location
[call site]
04627
hts_malloc_ps
[function]
[call site]
04628
__errno_location
[call site]
04629
hts_malloc_ps
[function]
[call site]
04630
hts_log
[function]
[call site]
04631
isspace_c
[function]
[call site]
04632
hts_strprint
[function]
[call site]
04633
hts_log
[function]
[call site]
04634
bcf_hrec_destroy
[function]
[call site]
04635
hts_strprint
[function]
[call site]
04636
hts_log
[function]
[call site]
04637
bcf_hrec_destroy
[function]
[call site]
04638
bcf_hdr_add_hrec
[function]
[call site]
04639
get_hdr_aux
[function]
[call site]
04640
bcf_hrec_check
[function]
[call site]
04641
bcf_hrec_set_type
[function]
[call site]
04642
strcmp
[call site]
04643
strcmp
[call site]
04644
strcmp
[call site]
04645
strcmp
[call site]
04646
bcf_hrec_find_key
[function]
[call site]
04647
strcasecmp
[call site]
04648
bcf_hrec_find_key
[function]
[call site]
04649
strcmp
[call site]
04650
bcf_hrec_find_key
[function]
[call site]
04651
hts_log
[function]
[call site]
04652
hts_log
[function]
[call site]
04653
hts_log
[function]
[call site]
04654
bcf_hdr_register_hrec
[function]
[call site]
04655
bcf_hrec_set_type
[function]
[call site]
04656
bcf_hrec_find_key
[function]
[call site]
04657
strtoll
[call site]
04658
bcf_hrec_find_key
[function]
[call site]
04659
strdup
[call site]
04660
kh_get_vdict
[function]
[call site]
04661
strcmp
[call site]
04662
kh_put_vdict
[function]
[call site]
04663
kh_resize_vdict
[function]
[call site]
04664
bcf_hrec_find_key
[function]
[call site]
04665
strtol
[call site]
04666
kh_del_vdict
[function]
[call site]
04667
hts_log
[function]
[call site]
04668
bcf_hdr_set_idx
[function]
[call site]
04669
hts_log
[function]
[call site]
04670
__errno_location
[call site]
04671
hts_resize_array_
[function]
[call site]
04672
hts_log
[function]
[call site]
04673
__errno_location
[call site]
04674
realloc
[call site]
04675
__errno_location
[call site]
04676
__errno_location
[call site]
04677
strerror
[call site]
04678
hts_log
[function]
[call site]
04679
__errno_location
[call site]
04680
abort
[call site]
04681
abort
[call site]
04682
kh_del_vdict
[function]
[call site]
04683
hrec_add_idx
[function]
[call site]
04684
hts_realloc_p
[function]
[call site]
04685
hts_realloc_p
[function]
[call site]
04686
strdup
[call site]
04687
kputw
[function]
[call site]
04688
strcmp
[call site]
04689
strcmp
[call site]
04690
strtol
[call site]
04691
hts_log
[function]
[call site]
04692
strcmp
[call site]
04693
strcmp
[call site]
04694
strcmp
[call site]
04695
strcmp
[call site]
04696
strcmp
[call site]
04697
strcmp
[call site]
04698
hts_log
[function]
[call site]
04699
strcmp
[call site]
04700
strcmp
[call site]
04701
strcmp
[call site]
04702
strcmp
[call site]
04703
strcmp
[call site]
04704
strcmp
[call site]
04705
strcmp
[call site]
04706
strcmp
[call site]
04707
strcmp
[call site]
04708
strcmp
[call site]
04709
__isoc99_sscanf
[call site]
04710
hts_log
[function]
[call site]
04711
hts_log
[function]
[call site]
04712
hts_log
[function]
[call site]
04713
strdup
[call site]
04714
kh_get_vdict
[function]
[call site]
04715
hrec_add_idx
[function]
[call site]
04716
kh_put_vdict
[function]
[call site]
04717
bcf_hdr_set_idx
[function]
[call site]
04718
kh_del_vdict
[function]
[call site]
04719
hrec_add_idx
[function]
[call site]
04720
bcf_hrec_destroy
[function]
[call site]
04721
ksprintf
[function]
[call site]
04722
kh_get_hdict
[function]
[call site]
04723
bcf_hrec_destroy
[function]
[call site]
04724
strcmp
[call site]
04725
bcf_get_version
[function]
[call site]
04726
get_hdr_aux
[function]
[call site]
04727
bcf_hdr_get_version
[function]
[call site]
04728
bcf_hdr_get_hrec
[function]
[call site]
04729
ksprintf
[function]
[call site]
04730
get_hdr_aux
[function]
[call site]
04731
kh_get_hdict
[function]
[call site]
04732
strcmp
[call site]
04733
strcmp
[call site]
04734
ksprintf
[function]
[call site]
04735
get_hdr_aux
[function]
[call site]
04736
kh_get_hdict
[function]
[call site]
04737
strcmp
[call site]
04738
bcf_hrec_find_key
[function]
[call site]
04739
strcmp
[call site]
04740
kh_get_vdict
[function]
[call site]
04741
hts_log
[function]
[call site]
04742
strstr
[call site]
04743
strchr
[call site]
04744
strtol
[call site]
04745
__errno_location
[call site]
04746
__errno_location
[call site]
04747
strtol
[call site]
04748
__errno_location
[call site]
04749
hts_log
[function]
[call site]
04750
bcf_hrec_find_key
[function]
[call site]
04751
ksprintf
[function]
[call site]
04752
kh_get_hdict
[function]
[call site]
04753
bcf_hrec_destroy
[function]
[call site]
04754
hts_realloc_p
[function]
[call site]
04755
bcf_hdr_unregister_hrec
[function]
[call site]
04756
bcf_hrec_find_key
[function]
[call site]
04757
kh_get_vdict
[function]
[call site]
04758
kh_put_hdict
[function]
[call site]
04759
kh_resize_hdict
[function]
[call site]
04760
bcf_hdr_append
[function]
[call site]
04761
kh_destroy_vdict
[function]
[call site]
04762
hts_getline
[function]
[call site]
04763
hts_log
[function]
[call site]
04764
hopen
[function]
[call site]
04765
khgetline
[function]
[call site]
04766
strchr
[call site]
04767
kputs
[function]
[call site]
04768
kputsn
[function]
[call site]
04769
kputs
[function]
[call site]
04770
atol
[call site]
04771
kputl
[function]
[call site]
04772
kputll
[function]
[call site]
04773
kputsn
[function]
[call site]
04774
hclose
[function]
[call site]
04775
hts_log
[function]
[call site]
04776
kputsn
[function]
[call site]
04777
kputc
[function]
[call site]
04778
hts_log
[function]
[call site]
04779
bcf_hdr_parse
[function]
[call site]
04780
bcf_hdr_parse_line
[function]
[call site]
04781
strcasecmp
[call site]
04782
hts_log
[function]
[call site]
04783
bcf_hdr_add_hrec
[function]
[call site]
04784
bcf_hrec_destroy
[function]
[call site]
04785
bcf_hdr_parse_line
[function]
[call site]
04786
bcf_hdr_add_hrec
[function]
[call site]
04787
bcf_hrec_destroy
[function]
[call site]
04788
bcf_hdr_parse_line
[function]
[call site]
04789
bcf_hdr_add_hrec
[function]
[call site]
04790
bcf_hrec_destroy
[function]
[call site]
04791
__assert_fail
[call site]
04792
__errno_location
[call site]
04793
strerror
[call site]
04794
hts_log
[function]
[call site]
04795
strncmp
[call site]
04796
strchr
[call site]
04797
hts_strprint
[function]
[call site]
04798
hts_log
[function]
[call site]
04799
hts_log
[function]
[call site]
04800
bcf_hdr_parse_sample_line
[function]
[call site]
04801
strlen
[call site]
04802
strncmp
[call site]
04803
hts_log
[function]
[call site]
04804
strlen
[call site]
04805
strncmp
[call site]
04806
hts_log
[function]
[call site]
04807
bcf_hdr_add_sample_len
[function]
[call site]
04808
isspace_c
[function]
[call site]
04809
hts_realloc_ps
[function]
[call site]
04810
kh_put_vdict
[function]
[call site]
04811
hts_log
[function]
[call site]
04812
bcf_hdr_sync
[function]
[call site]
04813
hts_realloc_p
[function]
[call site]
04814
get_hdr_aux
[function]
[call site]
04815
bcf_hdr_check_sanity
[function]
[call site]
04816
bcf_get_version
[function]
[call site]
04817
bcf_hdr_id2int
[function]
[call site]
04818
kh_get_vdict
[function]
[call site]
04819
atoi
[call site]
04820
hts_log
[function]
[call site]
04821
hts_log
[function]
[call site]
04822
bcf_hdr_id2int
[function]
[call site]
04823
atoi
[call site]
04824
hts_log
[function]
[call site]
04825
hts_log
[function]
[call site]
04826
tbx_index_load3
[function]
[call site]
04827
index_load
[function]
[call site]
04828
calloc
[call site]
04829
hts_idx_load3
[function]
[call site]
04830
idx_find_and_load
[function]
[call site]
04831
strstr
[call site]
04832
strdup
[call site]
04833
__errno_location
[call site]
04834
strerror
[call site]
04835
hts_log
[function]
[call site]
04836
hts_idx_load3
[function]
[call site]
04837
hisremote
[function]
[call site]
04838
stat
[call site]
04839
hts_log
[function]
[call site]
04840
idx_test_and_fetch
[function]
[call site]
04841
hisremote
[function]
[call site]
04842
strncmp
[call site]
04843
strcspn
[call site]
04844
kputsn
[function]
[call site]
04845
access
[call site]
04846
hopen
[function]
[call site]
04847
hts_log
[function]
[call site]
04848
hts_detect_format2
[function]
[call site]
04849
hts_log
[function]
[call site]
04850
hts_log
[function]
[call site]
04851
hts_open_tmpfile
[function]
[call site]
04852
hts_log
[function]
[call site]
04853
hts_log
[function]
[call site]
04854
calloc
[call site]
04855
__errno_location
[call site]
04856
strerror
[call site]
04857
hts_log
[function]
[call site]
04858
hread
[function]
[call site]
04859
hwrite
[function]
[call site]
04860
__errno_location
[call site]
04861
strerror
[call site]
04862
hts_log
[function]
[call site]
04863
hts_log
[function]
[call site]
04864
hclose
[function]
[call site]
04865
__errno_location
[call site]
04866
strerror
[call site]
04867
hts_log
[function]
[call site]
04868
rename
[call site]
04869
__errno_location
[call site]
04870
strerror
[call site]
04871
hts_log
[function]
[call site]
04872
ks_clear
[function]
[call site]
04873
hclose
[function]
[call site]
04874
hts_log
[function]
[call site]
04875
hopen
[function]
[call site]
04876
hclose_abruptly
[function]
[call site]
04877
strlen
[call site]
04878
__errno_location
[call site]
04879
hclose_abruptly
[function]
[call site]
04880
hclose_abruptly
[function]
[call site]
04881
unlink
[call site]
04882
__errno_location
[call site]
04883
strdup
[call site]
04884
idx_read
[function]
[call site]
04885
bgzf_open
[function]
[call site]
04886
ed_is_big
[function]
[call site]
04887
bgzf_read
[function]
[call site]
04888
memcmp
[call site]
04889
bgzf_read
[function]
[call site]
04890
ed_swap_4p
[function]
[call site]
04891
hts_malloc_ps
[function]
[call site]
04892
bgzf_read
[function]
[call site]
04893
bgzf_read
[function]
[call site]
04894
ed_swap_4p
[function]
[call site]
04895
hts_idx_init
[function]
[call site]
04896
idx_read_core
[function]
[call site]
04900
ed_is_big
[function]
[call site]
04901
kh_init_bin
[function]
[call site]
04902
bgzf_read
[function]
[call site]
04903
ed_swap_4p
[function]
[call site]
04904
bgzf_read
[function]
[call site]
04905
ed_swap_4p
[function]
[call site]
04906
kh_put_bin
[function]
[call site]
04907
bgzf_read
[function]
[call site]
04908
ed_swap_8p
[function]
[call site]
04909
bgzf_read
[function]
[call site]
04910
ed_swap_4p
[function]
[call site]
04911
hts_malloc_p
[function]
[call site]
04912
bgzf_read
[function]
[call site]
04913
swap_bins
[function]
[call site]
04914
ed_swap_8p
[function]
[call site]
04915
ed_swap_8p
[function]
[call site]
04916
bgzf_read
[function]
[call site]
04917
ed_swap_4p
[function]
[call site]
04918
hts_malloc_p
[function]
[call site]
04919
bgzf_read
[function]
[call site]
04920
ed_swap_8p
[function]
[call site]
04921
update_loff
[function]
[call site]
04922
hts_bin_bot
[function]
[call site]
04923
hts_bin_level
[function]
[call site]
04924
bgzf_read
[function]
[call site]
04925
ed_swap_8p
[function]
[call site]
04926
memcmp
[call site]
04927
bgzf_read
[function]
[call site]
04928
le_to_u32
[function]
[call site]
04929
hts_idx_init
[function]
[call site]
04930
le_to_u32
[function]
[call site]
04931
hts_malloc_ps
[function]
[call site]
04932
bgzf_read
[function]
[call site]
04933
idx_read_core
[function]
[call site]
04934
memcmp
[call site]
04935
bgzf_read
[function]
[call site]
04936
ed_swap_4p
[function]
[call site]
04937
hts_idx_init
[function]
[call site]
04938
idx_read_core
[function]
[call site]
04939
__errno_location
[call site]
04940
bgzf_close
[function]
[call site]
04941
bgzf_close
[function]
[call site]
04942
hts_idx_destroy
[function]
[call site]
04943
__errno_location
[call site]
04944
strerror
[call site]
04945
hts_log
[function]
[call site]
04946
hts_idx_check_local
[function]
[call site]
04947
hisremote
[function]
[call site]
04948
strlen
[call site]
04949
strncmp
[call site]
04950
strncmp
[call site]
04951
hts_log
[function]
[call site]
04952
strlen
[call site]
04953
calloc
[call site]
04954
strcpy
[call site]
04955
stat
[call site]
04956
strcpy
[call site]
04957
stat
[call site]
04958
strcpy
[call site]
04959
stat
[call site]
04960
strcpy
[call site]
04961
stat
[call site]
04962
strcpy
[call site]
04963
stat
[call site]
04964
strcpy
[call site]
04965
stat
[call site]
04966
strcpy
[call site]
04967
stat
[call site]
04968
strcpy
[call site]
04969
stat
[call site]
04970
strcpy
[call site]
04971
strcmp
[call site]
04972
strcmp
[call site]
04973
strcpy
[call site]
04974
stat
[call site]
04975
strcpy
[call site]
04976
stat
[call site]
04977
hisremote
[function]
[call site]
04978
idx_filename
[function]
[call site]
04979
haddextension
[function]
[call site]
04980
find_scheme_handler
[function]
[call site]
04981
strncmp
[call site]
04982
strcspn
[call site]
04983
strchr
[call site]
04984
strip_extension
[function]
[call site]
04985
kputsn
[function]
[call site]
04986
kputs
[function]
[call site]
04987
kputs
[function]
[call site]
04988
idx_test_and_fetch
[function]
[call site]
04989
haddextension
[function]
[call site]
04990
idx_test_and_fetch
[function]
[call site]
04991
idx_filename
[function]
[call site]
04992
idx_filename
[function]
[call site]
04993
idx_filename
[function]
[call site]
04994
idx_filename
[function]
[call site]
04995
idx_filename
[function]
[call site]
04996
hts_log
[function]
[call site]
04997
hts_idx_load3
[function]
[call site]
04998
idx_read
[function]
[call site]
04999
hts_idx_get_meta
[function]
[call site]
05000
le_to_i32
[function]
[call site]
05001
le_to_i32
[function]
[call site]
05002
le_to_i32
[function]
[call site]
05003
le_to_i32
[function]
[call site]
05004
le_to_i32
[function]
[call site]
05005
le_to_i32
[function]
[call site]
05006
le_to_u32
[function]
[call site]
05007
get_tid
[function]
[call site]
05008
kh_init_s2i
[function]
[call site]
05009
kh_put_s2i
[function]
[call site]
05010
strdup
[call site]
05011
kh_del_s2i
[function]
[call site]
05012
kh_get_s2i
[function]
[call site]
05013
__errno_location
[call site]
05014
strerror
[call site]
05015
hts_log
[function]
[call site]
05016
strlen
[call site]
05017
hts_log
[function]
[call site]
05018
tbx_destroy
[function]
[call site]
05019
hts_idx_destroy
[function]
[call site]
05020
kh_destroy_s2i
[function]
[call site]
05021
tbx_seqnames
[function]
[call site]
05022
calloc
[call site]
05023
calloc
[call site]
05024
__assert_fail
[call site]
05025
__assert_fail
[call site]
05026
bcf_hdr_get_hrec
[function]
[call site]
05027
add_missing_contig_hrec
[function]
[call site]
05028
calloc
[call site]
05029
strdup
[call site]
05030
bcf_hrec_add_key
[function]
[call site]
05031
strlen
[call site]
05032
bcf_hrec_set_val
[function]
[call site]
05033
bcf_hdr_add_hrec
[function]
[call site]
05034
__errno_location
[call site]
05035
__errno_location
[call site]
05036
strerror
[call site]
05037
hts_log
[function]
[call site]
05038
bcf_hrec_destroy
[function]
[call site]
05039
__errno_location
[call site]
05040
bcf_hdr_sync
[function]
[call site]
05041
tbx_destroy
[function]
[call site]
05042
tbx_destroy
[function]
[call site]
05043
bcf_hdr_destroy
[function]
[call site]
05044
get_hdr_aux
[function]
[call site]
05045
kh_destroy_hdict
[function]
[call site]
05046
kh_destroy_vdict
[function]
[call site]
05047
bcf_hrec_destroy
[function]
[call site]
05048
hts_log
[function]
[call site]
05049
__assert_fail
[call site]
05050
bcf_hdr_init
[function]
[call site]
05051
hts_log
[function]
[call site]
05052
bgzf_read
[function]
[call site]
05053
hts_log
[function]
[call site]
05054
bcf_hdr_destroy
[function]
[call site]
05055
strncmp
[call site]
05056
strncmp
[call site]
05057
hts_log
[function]
[call site]
05058
hts_log
[function]
[call site]
05059
bcf_hdr_destroy
[function]
[call site]
05060
bgzf_read
[function]
[call site]
05061
__errno_location
[call site]
05062
__errno_location
[call site]
05063
bgzf_read
[function]
[call site]
05064
bcf_hdr_parse
[function]
[call site]
05065
bcf_hdr_incr_ref
[function]
[call site]
05066
get_hdr_aux
[function]
[call site]
05067
bgzf_set_private_data
[function]
[call site]
05068
__assert_fail
[call site]
05069
hdr_bgzf_private_data_cleanup
[function]
[call site]
05070
bcf_hdr_decr_ref
[function]
[call site]
05071
get_hdr_aux
[function]
[call site]
05072
bcf_hdr_destroy
[function]
[call site]
05073
hts_log
[function]
[call site]
05074
bcf_hdr_destroy
[function]
[call site]
05075
hts_close_or_abort
[function]
[call site]
05076
hts_close
[function]
[call site]
05077
bcf_hdr_write
[function]
[call site]
05078
__errno_location
[call site]
05079
bcf_hdr_sync
[function]
[call site]
05080
vcf_hdr_write
[function]
[call site]
05081
bcf_hdr_format
[function]
[call site]
05082
_bcf_hrec_format
[function]
[call site]
05083
ksprintf
[function]
[call site]
05084
strcmp
[call site]
05085
kputc
[function]
[call site]
05086
ksprintf
[function]
[call site]
05087
ksprintf
[function]
[call site]
05088
ksprintf
[function]
[call site]
05089
ksprintf
[function]
[call site]
05090
ksprintf
[function]
[call site]
05091
ksprintf
[function]
[call site]
05092
ksprintf
[function]
[call site]
05093
bgzf_write
[function]
[call site]
05094
bgzf_flush
[function]
[call site]
05095
hwrite
[function]
[call site]
05096
bcf_hdr_format
[function]
[call site]
05097
kputc
[function]
[call site]
05098
bgzf_write
[function]
[call site]
05099
u32_to_le
[function]
[call site]
05100
bgzf_write
[function]
[call site]
05101
bgzf_write
[function]
[call site]
05102
bgzf_flush
[function]
[call site]
05103
bcf_hdr_incr_ref
[function]
[call site]
05104
bgzf_set_private_data
[function]
[call site]
05105
hdr_bgzf_private_data_cleanup
[function]
[call site]
05106
bcf_init
[function]
[call site]
05107
calloc
[call site]
05108
bcf_read
[function]
[call site]
05109
vcf_read
[function]
[call site]
05110
hts_getline
[function]
[call site]
05111
vcf_parse
[function]
[call site]
05112
ks_resize
[function]
[call site]
05113
bcf_clear
[function]
[call site]
05114
bcf_float_set
[function]
[call site]
05115
kstrtok
[function]
[call site]
05116
kh_get_vdict
[function]
[call site]
05117
hts_log
[function]
[call site]
05118
fix_chromosome
[function]
[call site]
05119
ksprintf
[function]
[call site]
05120
bcf_hdr_parse_line
[function]
[call site]
05121
bcf_hdr_add_hrec
[function]
[call site]
05122
bcf_hrec_destroy
[function]
[call site]
05123
bcf_hdr_sync
[function]
[call site]
05124
kh_get_vdict
[function]
[call site]
05125
hts_log
[function]
[call site]
05126
kstrtok
[function]
[call site]
05127
hts_str2uint
[function]
[call site]
05128
hts_log
[function]
[call site]
05129
hts_log
[function]
[call site]
05130
kstrtok
[function]
[call site]
05131
memcmp
[call site]
05132
bcf_enc_vchar
[function]
[call site]
05133
bcf_enc_size
[function]
[call site]
05134
ks_resize
[function]
[call site]
05135
ks_resize
[function]
[call site]
05136
i16_to_le
[function]
[call site]
05137
i32_to_le
[function]
[call site]
05138
kputsn
[function]
[call site]
05139
bcf_enc_size
[function]
[call site]
05140
kstrtok
[function]
[call site]
05141
bcf_enc_vchar
[function]
[call site]
05142
kstrtok
[function]
[call site]
05143
memcmp
[call site]
05144
bcf_seqname_safe
[function]
[call site]
05145
bcf_seqname
[function]
[call site]
05146
bcf_hdr_id2name
[function]
[call site]
05147
hts_log
[function]
[call site]
05148
bcf_enc_vchar
[function]
[call site]
05149
kstrtok
[function]
[call site]
05150
memcmp
[call site]
05151
atof
[call site]
05152
bcf_float_set
[function]
[call site]
05153
kstrtok
[function]
[call site]
05154
memcmp
[call site]
05155
vcf_parse_filter
[function]
[call site]
05156
hts_malloc_p
[function]
[call site]
05157
bcf_seqname_safe
[function]
[call site]
05158
hts_log
[function]
[call site]
05159
kstrtok
[function]
[call site]
05160
kh_get_vdict
[function]
[call site]
05161
hts_log
[function]
[call site]
05162
ksprintf
[function]
[call site]
05163
bcf_hdr_parse_line
[function]
[call site]
05164
bcf_hdr_add_hrec
[function]
[call site]
05165
bcf_hrec_destroy
[function]
[call site]
05166
bcf_hdr_sync
[function]
[call site]
05167
kh_get_vdict
[function]
[call site]
05168
bcf_seqname_safe
[function]
[call site]
05169
hts_log
[function]
[call site]
05170
bcf_enc_vint
[function]
[call site]
05171
bcf_enc_size
[function]
[call site]
05172
bcf_enc_int1
[function]
[call site]
05173
ks_resize
[function]
[call site]
05174
i16_to_le
[function]
[call site]
05175
i32_to_le
[function]
[call site]
05176
bcf_enc_size
[function]
[call site]
05177
ks_resize
[function]
[call site]
05178
bcf_enc_size
[function]
[call site]
05179
ks_resize
[function]
[call site]
05180
i16_to_le
[function]
[call site]
05181
bcf_enc_size
[function]
[call site]
05182
ks_resize
[function]
[call site]
05183
i32_to_le
[function]
[call site]
05184
bcf_enc_vint
[function]
[call site]
05185
kstrtok
[function]
[call site]
05186
memcmp
[call site]
05187
vcf_parse_info
[function]
[call site]
05188
bcf_seqname_safe
[function]
[call site]
05189
kh_get_vdict
[function]
[call site]
05190
hts_log
[function]
[call site]
05191
ksprintf
[function]
[call site]
05192
bcf_hdr_parse_line
[function]
[call site]
05193
bcf_hdr_add_hrec
[function]
[call site]
05194
bcf_hrec_destroy
[function]
[call site]
05195
bcf_hdr_sync
[function]
[call site]
05196
kh_get_vdict
[function]
[call site]
05197
bcf_seqname_safe
[function]
[call site]
05198
hts_log
[function]
[call site]
05199
bcf_enc_int1
[function]
[call site]
05200
bcf_enc_size
[function]
[call site]
05201
bcf_enc_vchar
[function]
[call site]
05202
hts_realloc_p
[function]
[call site]
05203
bcf_seqname_safe
[function]
[call site]
05204
hts_log
[function]
[call site]
05205
hts_str2int
[function]
[call site]
05206
bcf_seqname_safe
[function]
[call site]
05207
hts_log
[function]
[call site]
05208
bcf_enc_int1
[function]
[call site]
05209
bcf_enc_vint
[function]
[call site]
05210
memcmp
[call site]
05211
bcf_seqname_safe
[function]
[call site]
05212
hts_log
[function]
[call site]
05213
hts_str2dbl
[function]
[call site]
05214
bcf_float_set
[function]
[call site]
05215
bcf_enc_vfloat
[function]
[call site]
05216
__assert_fail
[call site]
05217
bcf_enc_size
[function]
[call site]
05218
serialize_float_array
[function]
[call site]
05219
ks_resize
[function]
[call site]
05220
float_to_le
[function]
[call site]
05221
kstrtok
[function]
[call site]
05222
vcf_parse_format
[function]
[call site]
05223
vcf_parse_format_empty1
[function]
[call site]
05224
bcf_seqname_safe
[function]
[call site]
05225
hts_log
[function]
[call site]
05226
vcf_parse_format_dict2
[function]
[call site]
05227
kstrtok
[function]
[call site]
05228
bcf_seqname_safe
[function]
[call site]
05229
hts_log
[function]
[call site]
05230
kh_get_vdict
[function]
[call site]
05231
bcf_seqname_safe
[function]
[call site]
05232
hts_log
[function]
[call site]
05233
bcf_seqname_safe
[function]
[call site]
05234
hts_log
[function]
[call site]
05235
ksprintf
[function]
[call site]
05236
bcf_hdr_parse_line
[function]
[call site]
05237
bcf_hdr_add_hrec
[function]
[call site]
05238
bcf_hrec_destroy
[function]
[call site]
05239
bcf_hdr_sync
[function]
[call site]
05240
kh_get_vdict
[function]
[call site]
05241
bcf_seqname_safe
[function]
[call site]
05242
hts_log
[function]
[call site]
05243
vcf_parse_format_max3
[function]
[call site]
05244
hts_log
[function]
[call site]
05245
vcf_parse_format_alloc4
[function]
[call site]
05246
bcf_seqname_safe
[function]
[call site]
05247
hts_log
[function]
[call site]
05248
align_mem
[function]
[call site]
05249
kputsn
[function]
[call site]
05250
bcf_seqname_safe
[function]
[call site]
05251
hts_log
[function]
[call site]
05252
bcf_seqname_safe
[function]
[call site]
05253
hts_log
[function]
[call site]
05254
ks_resize
[function]
[call site]
05255
bcf_seqname_safe
[function]
[call site]
05256
hts_log
[function]
[call site]
05257
bcf_seqname_safe
[function]
[call site]
05258
hts_log
[function]
[call site]
05259
vcf_parse_format_fill5
[function]
[call site]
05260
bcf_get_version
[function]
[call site]
05261
bcf_seqname_safe
[function]
[call site]
05262
hts_log
[function]
[call site]
05263
hts_str2uint
[function]
[call site]
05264
bcf_seqname_safe
[function]
[call site]
05265
hts_log
[function]
[call site]
05266
bcf_seqname_safe
[function]
[call site]
05267
hts_log
[function]
[call site]
05268
hts_str2int
[function]
[call site]
05269
bcf_seqname_safe
[function]
[call site]
05270
hts_log
[function]
[call site]
05271
isdigit_c
[function]
[call site]
05272
bcf_float_set
[function]
[call site]
05273
hts_str2dbl
[function]
[call site]
05274
bcf_seqname
[function]
[call site]
05275
hts_log
[function]
[call site]
05276
bcf_float_set
[function]
[call site]
05277
bcf_float_set
[function]
[call site]
05278
bcf_seqname_safe
[function]
[call site]
05279
hts_log
[function]
[call site]
05280
hts_strprint
[function]
[call site]
05281
bcf_seqname_safe
[function]
[call site]
05282
hts_log
[function]
[call site]
05283
bcf_float_set
[function]
[call site]
05284
bcf_float_set
[function]
[call site]
05285
vcf_parse_format_gt6
[function]
[call site]
05286
bcf_enc_int1
[function]
[call site]
05287
bcf_enc_size
[function]
[call site]
05288
kputsn
[function]
[call site]
05289
bcf_enc_vint
[function]
[call site]
05290
bcf_enc_size
[function]
[call site]
05291
serialize_float_array
[function]
[call site]
05292
bcf_seqname_safe
[function]
[call site]
05293
hts_log
[function]
[call site]
05294
vcf_parse_format_check7
[function]
[call site]
05295
bcf_seqname_safe
[function]
[call site]
05296
hts_log
[function]
[call site]
05297
bcf_seqname_safe
[function]
[call site]
05298
hts_log
[function]
[call site]
05299
get_rlen
[function]
[call site]
05300
bcf_hdr_id2int
[function]
[call site]
05301
svlen_on_ref_for_vcf_alt
[function]
[call site]
05302
strlen
[call site]
05303
memcmp
[call site]
05304
memcmp
[call site]
05305
memcmp
[call site]
05306
memcmp
[call site]
05307
strcmp
[call site]
05308
strcmp
[call site]
05309
strlen
[call site]
05310
bcf_dec_size
[function]
[call site]
05311
bcf_dec_typed_int1
[function]
[call site]
05312
bcf_dec_int1
[function]
[call site]
05313
le_to_i8
[function]
[call site]
05314
le_to_i16
[function]
[call site]
05315
le_to_i32
[function]
[call site]
05316
le_to_i64
[function]
[call site]
05317
le_to_u64
[function]
[call site]
05318
bcf_dec_size
[function]
[call site]
05319
svlen_on_ref_for_vcf_alt
[function]
[call site]
05320
strncmp
[call site]
05321
strncmp
[call site]
05322
bcf_dec_size
[function]
[call site]
05323
bcf_hdr_id2int
[function]
[call site]
05324
bcf_get_info
[function]
[call site]
05325
bcf_hdr_id2int
[function]
[call site]
05326
bcf_get_info_id
[function]
[call site]
05327
bcf_unpack
[function]
[call site]
05328
bcf_fmt_sized_array
[function]
[call site]
05329
bcf_dec_size
[function]
[call site]
05330
bcf_fmt_array
[function]
[call site]
05331
kputc_
[function]
[call site]
05332
memchr
[call site]
05333
kputsn
[function]
[call site]
05334
kputc
[function]
[call site]
05335
le_to_i8
[function]
[call site]
05336
kputc_
[function]
[call site]
05337
kputc
[function]
[call site]
05338
kputw
[function]
[call site]
05339
le_to_i16
[function]
[call site]
05340
kputc_
[function]
[call site]
05341
kputc
[function]
[call site]
05342
kputw
[function]
[call site]
05343
le_to_i32
[function]
[call site]
05344
kputc_
[function]
[call site]
05345
kputc
[function]
[call site]
05346
kputw
[function]
[call site]
05347
le_to_u32
[function]
[call site]
05348
kputc_
[function]
[call site]
05349
kputc
[function]
[call site]
05350
le_to_float
[function]
[call site]
05351
kputd
[function]
[call site]
05352
hts_log
[function]
[call site]
05353
exit
[call site]
05354
kputc_
[function]
[call site]
05355
hts_realloc_or_die
[function]
[call site]
05356
bcf_fmt_sized_array
[function]
[call site]
05357
kputc_
[function]
[call site]
05358
bcf_dec_size
[function]
[call site]
05359
hts_realloc_or_die
[function]
[call site]
05360
bcf_dec_int1
[function]
[call site]
05361
hts_realloc_or_die
[function]
[call site]
05362
bcf_unpack_info_core1
[function]
[call site]
05363
bcf_dec_typed_int1
[function]
[call site]
05364
bcf_dec_size
[function]
[call site]
05365
le_to_i16
[function]
[call site]
05366
le_to_i32
[function]
[call site]
05367
le_to_float
[function]
[call site]
05368
le_to_i64
[function]
[call site]
05369
hts_realloc_or_die
[function]
[call site]
05370
bcf_unpack_fmt_core1
[function]
[call site]
05371
bcf_dec_typed_int1
[function]
[call site]
05372
bcf_dec_size
[function]
[call site]
05373
bcf_get_info
[function]
[call site]
05374
bcf_dec_typed_int1
[function]
[call site]
05375
bcf_unpack_info_core1
[function]
[call site]
05376
bcf_unpack_info_core1
[function]
[call site]
05377
bcf_dec_size
[function]
[call site]
05378
bcf_hdr_id2int
[function]
[call site]
05379
bcf_get_fmt
[function]
[call site]
05380
bcf_hdr_id2int
[function]
[call site]
05381
bcf_get_fmt_id
[function]
[call site]
05382
bcf_unpack
[function]
[call site]
05383
bcf_dec_typed_int1
[function]
[call site]
05384
bcf_unpack_fmt_core1
[function]
[call site]
05385
bcf_dec_size
[function]
[call site]
05386
le_to_i8
[function]
[call site]
05387
le_to_i16
[function]
[call site]
05388
le_to_i32
[function]
[call site]
05389
le_to_i64
[function]
[call site]
05390
le_to_i8
[function]
[call site]
05391
le_to_i16
[function]
[call site]
05392
le_to_i32
[function]
[call site]
05393
le_to_i64
[function]
[call site]
05394
bgzf_get_private_data
[function]
[call site]
05395
__assert_fail
[call site]
05396
bcf_read1_core
[function]
[call site]
05397
bgzf_read
[function]
[call site]
05398
bcf_clear
[function]
[call site]
05399
le_to_u32
[function]
[call site]
05400
le_to_u32
[function]
[call site]
05401
ks_resize
[function]
[call site]
05402
ks_resize
[function]
[call site]
05403
le_to_i32
[function]
[call site]
05404
le_to_u32
[function]
[call site]
05405
le_to_i32
[function]
[call site]
05406
le_to_float
[function]
[call site]
05407
le_to_u16
[function]
[call site]
05408
le_to_u16
[function]
[call site]
05409
le_to_u32
[function]
[call site]
05410
bgzf_read
[function]
[call site]
05411
bgzf_read
[function]
[call site]
05412
bcf_record_check
[function]
[call site]
05413
bcf_get_version
[function]
[call site]
05414
bcf_hdr_id2int
[function]
[call site]
05415
hts_log
[function]
[call site]
05416
bcf_dec_size_safe
[function]
[call site]
05417
bcf_dec_typed_int1_safe
[function]
[call site]
05418
le_to_i16
[function]
[call site]
05419
le_to_i32
[function]
[call site]
05420
bcf_seqname_safe
[function]
[call site]
05421
get_type_name
[function]
[call site]
05422
hts_log
[function]
[call site]
05423
bcf_seqname_safe
[function]
[call site]
05424
hts_log
[function]
[call site]
05425
bcf_dec_size_safe
[function]
[call site]
05426
bcf_seqname_safe
[function]
[call site]
05427
get_type_name
[function]
[call site]
05428
hts_log
[function]
[call site]
05429
bcf_dec_size_safe
[function]
[call site]
05430
bcf_seqname_safe
[function]
[call site]
05431
get_type_name
[function]
[call site]
05432
hts_log
[function]
[call site]
05433
bcf_dec_int1
[function]
[call site]
05434
bcf_seqname_safe
[function]
[call site]
05435
hts_log
[function]
[call site]
05436
bcf_dec_typed_int1_safe
[function]
[call site]
05437
bcf_seqname_safe
[function]
[call site]
05438
hts_log
[function]
[call site]
05439
bcf_dec_size_safe
[function]
[call site]
05440
bcf_seqname_safe
[function]
[call site]
05441
get_type_name
[function]
[call site]
05442
hts_log
[function]
[call site]
05443
bcf_dec_typed_int1_safe
[function]
[call site]
05444
bcf_record_check_err
[function]
[call site]
05445
bcf_seqname_safe
[function]
[call site]
05446
hts_log
[function]
[call site]
05447
bcf_dec_size_safe
[function]
[call site]
05448
bcf_record_check_err
[function]
[call site]
05449
updatephasing
[function]
[call site]
05450
bcf_seqname_safe
[function]
[call site]
05451
hts_log
[function]
[call site]
05452
get_rlen
[function]
[call site]
05453
bcf_seqname_safe
[function]
[call site]
05454
hts_log
[function]
[call site]
05455
bcf_seqname_safe
[function]
[call site]
05456
hts_log
[function]
[call site]
05457
bcf_subset_format
[function]
[call site]
05458
hts_realloc_or_die
[function]
[call site]
05459
bcf_unpack_fmt_core1
[function]
[call site]
05460
bcf_write
[function]
[call site]
05461
bcf_hdr_sync
[function]
[call site]
05462
bcf_seqname_safe
[function]
[call site]
05463
vcf_write
[function]
[call site]
05464
vcf_format
[function]
[call site]
05465
bcf_seqname
[function]
[call site]
05466
hts_log
[function]
[call site]
05467
__errno_location
[call site]
05468
bcf_unpack
[function]
[call site]
05469
get_hdr_aux
[function]
[call site]
05470
calloc
[call site]
05471
kputs
[function]
[call site]
05472
kputs
[function]
[call site]
05473
kputc_
[function]
[call site]
05474
kputs
[function]
[call site]
05475
kputc_
[function]
[call site]
05476
kputc_
[function]
[call site]
05477
kputc_
[function]
[call site]
05478
kputs
[function]
[call site]
05479
kputc_
[function]
[call site]
05480
kputc_
[function]
[call site]
05481
bcf_float_is_missing
[function]
[call site]
05482
kputc_
[function]
[call site]
05483
kputd
[function]
[call site]
05484
kputc_
[function]
[call site]
05485
bcf_seqname_safe
[function]
[call site]
05486
hts_log
[function]
[call site]
05487
__errno_location
[call site]
05488
kputc_
[function]
[call site]
05489
strlen
[call site]
05490
kputsn
[function]
[call site]
05491
kputc_
[function]
[call site]
05492
kputc_
[function]
[call site]
05493
bcf_dec_typed_int1
[function]
[call site]
05494
bcf_dec_size
[function]
[call site]
05495
bcf_seqname_safe
[function]
[call site]
05496
hts_log
[function]
[call site]
05497
__errno_location
[call site]
05498
strlen
[call site]
05499
ks_resize
[function]
[call site]
05500
bcf_fmt_array
[function]
[call site]
05501
bcf_float_is_missing
[function]
[call site]
05502
kputc_
[function]
[call site]
05503
kputd
[function]
[call site]
05504
kputc_
[function]
[call site]
05505
kputc_
[function]
[call site]
05506
kputw
[function]
[call site]
05507
kputc_
[function]
[call site]
05508
kputll
[function]
[call site]
05509
bcf_seqname_safe
[function]
[call site]
05510
hts_log
[function]
[call site]
05511
__errno_location
[call site]
05512
kputc_
[function]
[call site]
05513
kputc_
[function]
[call site]
05514
hts_malloc_p
[function]
[call site]
05515
bcf_dec_typed_int1
[function]
[call site]
05516
bcf_dec_size
[function]
[call site]
05517
kputc_
[function]
[call site]
05518
bcf_seqname_safe
[function]
[call site]
05519
hts_log
[function]
[call site]
05520
__errno_location
[call site]
05521
strlen
[call site]
05522
kputsn
[function]
[call site]
05523
kputsn
[function]
[call site]
05524
kputc_
[function]
[call site]
05525
kputc_
[function]
[call site]
05526
bcf_format_gt_v2
[function]
[call site]
05527
le_to_i8
[function]
[call site]
05528
kputc
[function]
[call site]
05529
kputw
[function]
[call site]
05530
le_to_i16
[function]
[call site]
05531
kputc
[function]
[call site]
05532
kputw
[function]
[call site]
05533
le_to_i32
[function]
[call site]
05534
kputc
[function]
[call site]
05535
kputw
[function]
[call site]
05536
kputc
[function]
[call site]
05537
hts_log
[function]
[call site]
05538
get_hdr_aux
[function]
[call site]
05539
kinsert_char
[function]
[call site]
05540
ks_resize
[function]
[call site]
05541
kinsert_char
[function]
[call site]
05542
kinsert_char
[function]
[call site]
05543
hts_log
[function]
[call site]
05544
__errno_location
[call site]
05545
bcf_fmt_array1
[function]
[call site]
05546
kputc_
[function]
[call site]
05547
kputc_
[function]
[call site]
05548
kputw
[function]
[call site]
05549
le_to_i16
[function]
[call site]
05550
kputc_
[function]
[call site]
05551
kputw
[function]
[call site]
05552
le_to_i32
[function]
[call site]
05553
kputc_
[function]
[call site]
05554
kputw
[function]
[call site]
05555
le_to_u32
[function]
[call site]
05556
kputc_
[function]
[call site]
05557
le_to_float
[function]
[call site]
05558
kputd
[function]
[call site]
05559
hts_log
[function]
[call site]
05560
bcf_fmt_array
[function]
[call site]
05561
kputc_
[function]
[call site]
05562
bcf_fmt_array1
[function]
[call site]
05563
bcf_fmt_array
[function]
[call site]
05564
kputc_
[function]
[call site]
05565
kputsn
[function]
[call site]
05566
kputc
[function]
[call site]
05567
bgzf_flush_try
[function]
[call site]
05568
hts_idx_amend_last
[function]
[call site]
05569
bgzf_write
[function]
[call site]
05570
hwrite
[function]
[call site]
05571
bcf_seqname_safe
[function]
[call site]
05572
hts_idx_tbi_name
[function]
[call site]
05573
strlen
[call site]
05574
hts_realloc_ps
[function]
[call site]
05575
strcpy
[call site]
05576
le_to_u32
[function]
[call site]
05577
u32_to_le
[function]
[call site]
05578
bgzf_idx_push
[function]
[call site]
05579
bcf_strerror
[function]
[call site]
05580
add_desc_to_buffer
[function]
[call site]
05581
add_desc_to_buffer
[function]
[call site]
05585
bcf_seqname_safe
[function]
[call site]
05586
hts_log
[function]
[call site]
05587
bcf1_sync
[function]
[call site]
05588
bcf1_sync_id
[function]
[call site]
05589
strcmp
[call site]
05590
strlen
[call site]
05591
bcf_enc_vchar
[function]
[call site]
05592
bcf_enc_size
[function]
[call site]
05593
bcf1_sync_alleles
[function]
[call site]
05594
bcf1_sync_filter
[function]
[call site]
05598
bcf_enc_vint
[function]
[call site]
05599
bcf_enc_vint
[function]
[call site]
05600
bcf1_sync_info
[function]
[call site]
05601
kputsn_
[function]
[call site]
05602
bcf_unpack
[function]
[call site]
05603
bcf1_sync_id
[function]
[call site]
05604
kputsn_
[function]
[call site]
05605
bcf1_sync_alleles
[function]
[call site]
05606
kputsn_
[function]
[call site]
05607
strlen
[call site]
05608
bcf1_sync_filter
[function]
[call site]
05609
kputsn_
[function]
[call site]
05610
bcf_enc_vint
[function]
[call site]
05611
bcf1_sync_info
[function]
[call site]
05612
kputsn_
[function]
[call site]
05613
kputsn_
[function]
[call site]
05614
bcf_seqname_safe
[function]
[call site]
05615
hts_log
[function]
[call site]
05616
u32_to_le
[function]
[call site]
05617
u32_to_le
[function]
[call site]
05618
i32_to_le
[function]
[call site]
05619
u32_to_le
[function]
[call site]
05620
u32_to_le
[function]
[call site]
05621
float_to_le
[function]
[call site]
05622
u16_to_le
[function]
[call site]
05623
u16_to_le
[function]
[call site]
05624
u32_to_le
[function]
[call site]
05625
bgzf_write
[function]
[call site]
05626
bgzf_write
[function]
[call site]
05627
bgzf_write
[function]
[call site]
05628
bgzf_idx_push
[function]
[call site]
05629
bcf_destroy
[function]
[call site]
05630
bcf_empty
[function]
[call site]
05631
bcf_clear
[function]
[call site]
05632
bcf_hdr_destroy
[function]
[call site]
05633
hts_close_or_abort
[function]
[call site]
05634
hts_close
[function]
[call site]
05635
view_vcf
[function]
[call site]
05636