The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 234 | 4118 | hts_str2dbl | call site: 04118 | bam_sym_lookup |
| 142 | 1591 | hts_hopen | call site: 01591 | hts_process_opts |
| 114 | 4833 | idx_find_and_load | call site: 04833 | hts_idx_load3 |
| 104 | 1350 | bgzf_read_block | call site: 01350 | bgzf_index_dump |
| 101 | 3068 | ks_free | call site: 03068 | cram_get_ref |
| 79 | 2581 | zlib_mem_deflate | call site: 02581 | fqz_compress |
| 69 | 1520 | refs2id | call site: 01520 | hts_tpool_init |
| 67 | 2733 | rans_compress_to_4x16 | call site: 02733 | arith_compress_to |
| 67 | 3997 | hts_realloc_ps | call site: 03997 | sam_parse_worker |
| 64 | 4979 | idx_find_and_load | call site: 04979 | hts_idx_load3 |
| 63 | 1833 | sam_format1_append | call site: 01833 | hts_set_opt |
| 52 | 4532 | sam_write1 | call site: 04532 | fastq_format1 |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
realloc
[call site]
00024
__ac_FNV1a_hash_string
[function]
[call site]
00025
strcmp
[call site]
00026
__errno_location
[call site]
00027
strerror
[call site]
00028
hts_log
[function]
[call site]
00029
priority
[function]
[call site]
00030
hfile_add_scheme_handler
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
init_add_plugin
[function]
[call site]
00033
hts_log
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hfile_plugin_init_mem
[function]
[call site]
00037
hfile_add_scheme_handler
[function]
[call site]
00038
init_add_plugin
[function]
[call site]
00039
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00040
hfile_add_scheme_handler
[function]
[call site]
00041
init_add_plugin
[function]
[call site]
00042
hfile_plugin_init_libcurl
[function]
[call site]
00043
hts_version
[function]
[call site]
00044
curl_global_init
[call site]
00045
easy_errno
[function]
[call site]
00046
curl_easy_getinfo
[call site]
00047
curl_easy_getinfo
[call site]
00048
http_status_errno
[function]
[call site]
00049
curl_easy_strerror
[call site]
00050
hts_log
[function]
[call site]
00051
__errno_location
[call site]
00052
curl_share_init
[call site]
00053
curl_global_cleanup
[call site]
00054
__errno_location
[call site]
00055
curl_share_setopt
[call site]
00056
share_lock
[function]
[call site]
00057
pthread_mutex_lock
[call site]
00058
curl_share_setopt
[call site]
00059
share_unlock
[function]
[call site]
00060
pthread_mutex_unlock
[call site]
00061
curl_share_setopt
[call site]
00062
curl_share_cleanup
[call site]
00063
curl_global_cleanup
[call site]
00064
__errno_location
[call site]
00065
getenv
[call site]
00066
strdup
[call site]
00067
kh_init_auth_map
[function]
[call site]
00068
calloc
[call site]
00069
__errno_location
[call site]
00070
kh_destroy_auth_map
[function]
[call site]
00071
curl_share_cleanup
[call site]
00072
curl_global_cleanup
[call site]
00073
__errno_location
[call site]
00074
getenv
[call site]
00075
strcmp
[call site]
00076
getenv
[call site]
00077
atoi
[call site]
00078
getenv
[call site]
00079
atol
[call site]
00080
getenv
[call site]
00081
atol
[call site]
00082
getenv
[call site]
00083
atol
[call site]
00084
getenv
[call site]
00085
atol
[call site]
00086
curl_version_info
[call site]
00087
ksprintf
[function]
[call site]
00088
kvsprintf
[function]
[call site]
00089
kputd
[function]
[call site]
00090
kputsn
[function]
[call site]
00091
__errno_location
[call site]
00092
ks_resize
[function]
[call site]
00093
realloc
[call site]
00094
kputsn
[function]
[call site]
00095
kputc
[function]
[call site]
00096
ks_resize
[function]
[call site]
00097
ks_resize
[function]
[call site]
00098
snprintf
[call site]
00099
kputsn
[function]
[call site]
00100
vsnprintf
[call site]
00101
ks_resize
[function]
[call site]
00102
vsnprintf
[call site]
00103
hfile_add_scheme_handler
[function]
[call site]
00104
init_add_plugin
[function]
[call site]
00105
hfile_plugin_init_gcs
[function]
[call site]
00106
hfile_add_scheme_handler
[function]
[call site]
00107
hfile_add_scheme_handler
[function]
[call site]
00108
hfile_add_scheme_handler
[function]
[call site]
00109
init_add_plugin
[function]
[call site]
00110
hfile_plugin_init_s3
[function]
[call site]
00111
hts_version
[function]
[call site]
00112
curl_global_init
[call site]
00113
__errno_location
[call site]
00114
curl_share_init
[call site]
00115
curl_global_cleanup
[call site]
00116
__errno_location
[call site]
00117
curl_share_setopt
[call site]
00118
share_lock
[function]
[call site]
00119
pthread_mutex_lock
[call site]
00120
curl_share_setopt
[call site]
00121
share_unlock
[function]
[call site]
00122
pthread_mutex_unlock
[call site]
00123
curl_share_setopt
[call site]
00124
curl_share_cleanup
[call site]
00125
curl_global_cleanup
[call site]
00126
__errno_location
[call site]
00127
curl_version_info
[call site]
00128
ksprintf
[function]
[call site]
00129
hfile_add_scheme_handler
[function]
[call site]
00130
hfile_add_scheme_handler
[function]
[call site]
00131
hfile_add_scheme_handler
[function]
[call site]
00132
atexit
[call site]
00133
hfile_exit
[function]
[call site]
00134
hfile_shutdown
[function]
[call site]
00135
pthread_mutex_lock
[call site]
00136
kh_destroy_scheme_string
[function]
[call site]
00137
pthread_mutex_unlock
[call site]
00138
pthread_mutex_destroy
[call site]
00139
pthread_mutex_unlock
[call site]
00140
pthread_mutex_unlock
[call site]
00141
kh_get_scheme_string
[function]
[call site]
00142
strchr
[call site]
00143
strcmp
[call site]
00144
hopen_fd_stdinout
[function]
[call site]
00145
strchr
[call site]
00146
snprintf
[call site]
00147
hdopen
[function]
[call site]
00148
blksize
[function]
[call site]
00149
fstat
[call site]
00150
hfile_init
[function]
[call site]
00151
strchr
[call site]
00152
posix_memalign
[call site]
00153
strchr
[call site]
00154
hfile_destroy
[function]
[call site]
00155
__errno_location
[call site]
00156
__errno_location
[call site]
00157
strchr
[call site]
00158
strchr
[call site]
00159
hopen_fd
[function]
[call site]
00160
hfile_oflags
[function]
[call site]
00161
open
[call site]
00162
blksize
[function]
[call site]
00163
hfile_init
[function]
[call site]
00164
__errno_location
[call site]
00165
close
[call site]
00166
hfile_destroy
[function]
[call site]
00167
hts_hopen
[function]
[call site]
00168
calloc
[call site]
00169
strdup
[call site]
00170
ed_is_big
[function]
[call site]
00171
strchr
[call site]
00172
strncpy
[call site]
00173
strncpy
[call site]
00174
strchr
[call site]
00175
hts_detect_format2
[function]
[call site]
00176
hpeek
[function]
[call site]
00177
refill_buffer
[function]
[call site]
00178
__errno_location
[call site]
00179
memcmp
[call site]
00180
memcmp
[call site]
00181
decompress_peek_gz
[function]
[call site]
00182
hpeek
[function]
[call site]
00183
inflateInit2_
[call site]
00184
inflate
[call site]
00185
inflateReset
[call site]
00186
inflateEnd
[call site]
00187
memcmp
[call site]
00188
memcmp
[call site]
00189
memcmp
[call site]
00190
memcmp
[call site]
00191
decompress_peek_xz
[function]
[call site]
00192
hpeek
[function]
[call site]
00193
lzma_easy_decoder_memusage
[call site]
00194
lzma_stream_decoder
[call site]
00195
lzma_code
[call site]
00196
lzma_end
[call site]
00197
lzma_end
[call site]
00198
memcmp
[call site]
00199
hpeek
[function]
[call site]
00200
strcmp
[call site]
00201
find_file_extension
[function]
[call site]
00202
strstr
[call site]
00203
strlen
[call site]
00204
tolower_c
[function]
[call site]
00205
memcmp
[call site]
00206
memcmp
[call site]
00207
memcmp
[call site]
00208
memcmp
[call site]
00209
memcmp
[call site]
00210
memcmp
[call site]
00211
memcmp
[call site]
00212
strcmp
[call site]
00213
memcmp
[call site]
00214
parse_version
[function]
[call site]
00215
isdigit_c
[function]
[call site]
00216
__ctype_b_loc
[call site]
00217
isdigit_c
[function]
[call site]
00218
memcmp
[call site]
00219
memcmp
[call site]
00220
memcmp
[call site]
00221
memcmp
[call site]
00222
parse_version
[function]
[call site]
00223
memcmp
[call site]
00224
cmp_nonblank
[function]
[call site]
00225
isspace_c
[function]
[call site]
00226
__ctype_b_loc
[call site]
00227
memcmp
[call site]
00228
is_fastaq
[function]
[call site]
00229
is_fastaq
[function]
[call site]
00233
parse_tabbed_text
[function]
[call site]
00234
isdigit_c
[function]
[call site]
00235
strchr
[call site]
00236
isdigit_c
[function]
[call site]
00237
colmatch
[function]
[call site]
00238
colmatch
[function]
[call site]
00239
strstr
[call site]
00240
colmatch
[function]
[call site]
00241
strstr
[call site]
00242
colmatch
[function]
[call site]
00243
colmatch
[function]
[call site]
00244
is_text_only
[function]
[call site]
00245
__errno_location
[call site]
00246
hopen_htsget_redirect
[function]
[call site]
00247
hfile_init
[function]
[call site]
00248
parse_ga4gh_redirect_json
[function]
[call site]
00249
hts_json_fnext
[function]
[call site]
00250
hgetc
[function]
[call site]
00251
hgetc2
[function]
[call site]
00252
refill_buffer
[function]
[call site]
00253
fscan_string
[function]
[call site]
00254
hgetc
[function]
[call site]
00255
hgetc
[function]
[call site]
00256
kputc
[function]
[call site]
00257
kputc
[function]
[call site]
00258
kputc
[function]
[call site]
00259
kputc
[function]
[call site]
00260
kputc
[function]
[call site]
00261
kputc
[function]
[call site]
00262
hgetc
[function]
[call site]
00263
dehex
[function]
[call site]
00264
hgetc
[function]
[call site]
00265
dehex
[function]
[call site]
00266
hgetc
[function]
[call site]
00267
dehex
[function]
[call site]
00268
hgetc
[function]
[call site]
00269
dehex
[function]
[call site]
00270
encode_utf8
[function]
[call site]
00271
kputsn
[function]
[call site]
00272
kputc
[function]
[call site]
00273
kputsn
[function]
[call site]
00274
kputc
[function]
[call site]
00275
hpeek
[function]
[call site]
00276
strchr
[call site]
00277
hgetc
[function]
[call site]
00278
kputc
[function]
[call site]
00279
token_type
[function]
[call site]
00280
hts_json_fnext
[function]
[call site]
00284
strcmp
[call site]
00285
parse_ga4gh_body_json
[function]
[call site]
00286
hts_json_fnext
[function]
[call site]
00287
hts_json_fnext
[function]
[call site]
00288
strcmp
[call site]
00289
hts_json_fnext
[function]
[call site]
00290
hts_json_fnext
[function]
[call site]
00291
hts_realloc_or_die
[function]
[call site]
00292
__errno_location
[call site]
00293
realloc
[call site]
00294
__errno_location
[call site]
00295
strerror
[call site]
00296
hts_log
[function]
[call site]
00297
exit
[call site]
00298
hts_json_fnext
[function]
[call site]
00299
strcmp
[call site]
00300
hts_json_fnext
[function]
[call site]
00301
ks_release
[function]
[call site]
00302
strcmp
[call site]
00303
hts_json_fnext
[function]
[call site]
00304
hts_json_fnext
[function]
[call site]
00305
hts_json_fnext
[function]
[call site]
00306
kputs
[function]
[call site]
00307
__errno_location
[call site]
00308
strlen
[call site]
00309
kputsn
[function]
[call site]
00310
kputs
[function]
[call site]
00311
hts_realloc_or_die
[function]
[call site]
00312
ks_release
[function]
[call site]
00313
hts_json_fskip_value
[function]
[call site]
00314
skip_value
[function]
[call site]
00315
fnext
[function]
[call site]
00316
hts_json_fnext
[function]
[call site]
00317
strcmp
[call site]
00318
hts_json_fnext
[function]
[call site]
00319
hts_log
[function]
[call site]
00320
hts_json_fskip_value
[function]
[call site]
00321
hts_json_fnext
[function]
[call site]
00322
free_all_parts
[function]
[call site]
00323
free_part
[function]
[call site]
00324
hfile_destroy
[function]
[call site]
00325
__errno_location
[call site]
00326
hclose_abruptly
[function]
[call site]
00327
__errno_location
[call site]
00328
hfile_destroy
[function]
[call site]
00329
__errno_location
[call site]
00330
hts_crypt4gh_redirect
[function]
[call site]
00331
strlen
[call site]
00332
snprintf
[call site]
00333
strchr
[call site]
00334
snprintf
[call site]
00335
hopen
[function]
[call site]
00336
hts_detect_format2
[function]
[call site]
00337
strchr
[call site]
00338
strchr
[call site]
00339
strchr
[call site]
00340
strchr
[call site]
00341
strchr
[call site]
00342
strchr
[call site]
00343
strchr
[call site]
00344
strchr
[call site]
00345
abort
[call site]
00346
format_category
[function]
[call site]
00347
__errno_location
[call site]
00348
bgzf_hopen
[function]
[call site]
00349
strchr
[call site]
00350
bgzf_read_init
[function]
[call site]
00351
hpeek
[function]
[call site]
00352
calloc
[call site]
00353
hts_malloc_p
[function]
[call site]
00354
hts_prod_sat2
[function]
[call site]
00355
hts_malloc
[function]
[call site]
00356
__errno_location
[call site]
00357
memcmp
[call site]
00358
memcmp
[call site]
00359
hts_log
[function]
[call site]
00360
razf_info
[function]
[call site]
00361
strcmp
[call site]
00362
hseek
[function]
[call site]
00363
writebuffer_is_nonempty
[function]
[call site]
00364
flush_buffer
[function]
[call site]
00365
__errno_location
[call site]
00366
htell
[function]
[call site]
00367
__errno_location
[call site]
00368
__errno_location
[call site]
00369
__errno_location
[call site]
00370
hread
[function]
[call site]
00371
hread2
[function]
[call site]
00372
__errno_location
[call site]
00373
refill_buffer
[function]
[call site]
00374
ed_is_big
[function]
[call site]
00375
ed_swap_8p
[function]
[call site]
00376
ed_swap_8
[function]
[call site]
00377
hts_log
[function]
[call site]
00378
hts_log
[function]
[call site]
00379
__errno_location
[call site]
00380
kh_init_bgzf_cache
[function]
[call site]
00381
calloc
[call site]
00382
strchr
[call site]
00383
bgzf_write_init
[function]
[call site]
00384
calloc
[call site]
00385
mode2level
[function]
[call site]
00386
strchr
[call site]
00387
hts_malloc_p
[function]
[call site]
00388
strchr
[call site]
00389
calloc
[call site]
00390
deflateInit2_
[call site]
00391
bgzf_zerr
[function]
[call site]
00392
hts_log
[function]
[call site]
00396
__errno_location
[call site]
00397
strerror
[call site]
00398
hts_log
[function]
[call site]
00399
__errno_location
[call site]
00400
ed_is_big
[function]
[call site]
00401
cram_dopen
[function]
[call site]
00402
calloc
[call site]
00403
cram_read_file_def
[function]
[call site]
00404
hread
[function]
[call site]
00405
memcmp
[call site]
00406
hts_log
[function]
[call site]
00407
cram_init_tables
[function]
[call site]
00408
cram_init_varint
[function]
[call site]
00409
cram_read_SAM_hdr
[function]
[call site]
00410
int32_decode
[function]
[call site]
00411
hread
[function]
[call site]
00412
hread
[function]
[call site]
00413
cram_read_container
[function]
[call site]
00414
int32_decode
[function]
[call site]
00415
crc32
[call site]
00416
calloc
[call site]
00417
__errno_location
[call site]
00418
cram_free_container
[function]
[call site]
00419
cram_free_compression_header
[function]
[call site]
00420
kh_destroy_map
[function]
[call site]
00421
cram_free_block
[function]
[call site]
00422
kh_destroy_m_s2i
[function]
[call site]
00423
string_pool_destroy
[function]
[call site]
00424
cram_free_block
[function]
[call site]
00425
cram_free_slice
[function]
[call site]
00426
free_bam_list
[function]
[call site]
00427
bam_destroy1
[function]
[call site]
00428
bam_get_mempolicy
[function]
[call site]
00429
bam_get_mempolicy
[function]
[call site]
00430
bam_get_mempolicy
[function]
[call site]
00431
cram_free_block
[function]
[call site]
00432
cram_free_block
[function]
[call site]
00433
cram_free_block
[function]
[call site]
00434
cram_free_slice_header
[function]
[call site]
00435
cram_free_block
[function]
[call site]
00436
cram_free_block
[function]
[call site]
00437
cram_free_block
[function]
[call site]
00438
cram_free_block
[function]
[call site]
00439
cram_free_block
[function]
[call site]
00440
cram_free_block
[function]
[call site]
00441
string_pool_destroy
[function]
[call site]
00442
kh_destroy_m_s2i
[function]
[call site]
00443
kh_destroy_m_s2i
[function]
[call site]
00444
cram_free_slice
[function]
[call site]
00445
cram_stats_free
[function]
[call site]
00446
kh_destroy_m_i2i
[function]
[call site]
00447
cram_free_block
[function]
[call site]
00448
cram_free_block
[function]
[call site]
00449
kh_destroy_m_tagmap
[function]
[call site]
00450
free_bam_list
[function]
[call site]
00451
hts_malloc_p
[function]
[call site]
00452
hts_prod_sat2
[function]
[call site]
00453
hts_malloc
[function]
[call site]
00454
__errno_location
[call site]
00455
cram_free_container
[function]
[call site]
00456
cram_free_container
[function]
[call site]
00457
int32_decode
[function]
[call site]
00458
cram_free_container
[function]
[call site]
00459
hts_log
[function]
[call site]
00460
cram_free_container
[function]
[call site]
00461
cram_free_container
[function]
[call site]
00462
cram_read_block
[function]
[call site]
00463
hgetc
[function]
[call site]
00464
hts_log
[function]
[call site]
00465
crc32
[call site]
00466
hgetc
[function]
[call site]
00467
crc32
[call site]
00468
hread
[function]
[call site]
00469
hread
[function]
[call site]
00470
int32_decode
[function]
[call site]
00471
cram_free_container
[function]
[call site]
00472
cram_uncompress_block
[function]
[call site]
00473
crc32
[call site]
00474
hts_log
[function]
[call site]
00475
__assert_fail
[call site]
00476
zlib_mem_inflate
[function]
[call site]
00477
inflateInit2_
[call site]
00478
hts_log
[function]
[call site]
00479
inflate
[call site]
00480
hts_log
[function]
[call site]
00481
inflateEnd
[call site]
00482
realloc
[call site]
00483
inflateEnd
[call site]
00484
inflateEnd
[call site]
00485
BZ2_bzBuffToBuffDecompress
[call site]
00486
lzma_mem_inflate
[function]
[call site]
00487
lzma_easy_decoder_memusage
[call site]
00488
lzma_stream_decoder
[call site]
00489
realloc
[call site]
00490
lzma_code
[call site]
00491
hts_log
[function]
[call site]
00492
lzma_code
[call site]
00493
hts_log
[function]
[call site]
00494
realloc
[call site]
00495
lzma_end
[call site]
00496
lzma_end
[call site]
00497
rans_uncompress
[function]
[call site]
00498
rans_uncompress_O1
[function]
[call site]
00499
htscodecs_tls_calloc
[function]
[call site]
00500
htscodecs_tls_alloc
[function]
[call site]
00501
pthread_once
[call site]
00502
htscodecs_tls_init
[function]
[call site]
00503
pthread_key_create
[call site]
00504
htscodecs_tls_free_all
[function]
[call site]
00505
fprintf
[call site]
00506
strerror
[call site]
00507
fprintf
[call site]
00508
pthread_getspecific
[call site]
00509
calloc
[call site]
00510
pthread_setspecific
[call site]
00511
fprintf
[call site]
00512
calloc
[call site]
00513
RansDecSymbolInit32
[function]
[call site]
00514
__assert_fail
[call site]
00515
__assert_fail
[call site]
00516
RansDecInit
[function]
[call site]
00517
RansDecInit
[function]
[call site]
00518
RansDecInit
[function]
[call site]
00519
RansDecInit
[function]
[call site]
00520
RansDecAdvanceStep
[function]
[call site]
00521
RansDecAdvanceStep
[function]
[call site]
00522
RansDecAdvanceStep
[function]
[call site]
00523
RansDecAdvanceStep
[function]
[call site]
00524
RansDecRenorm2
[function]
[call site]
00525
RansDecRenorm2
[function]
[call site]
00526
RansDecRenormSafe
[function]
[call site]
00527
RansDecRenormSafe
[function]
[call site]
00528
RansDecRenormSafe
[function]
[call site]
00529
RansDecRenormSafe
[function]
[call site]
00530
RansDecGet
[function]
[call site]
00531
RansDecRenormSafe
[function]
[call site]
00532
htscodecs_tls_free
[function]
[call site]
00533
rans_uncompress_O0
[function]
[call site]
00537
RansDecInit
[function]
[call site]
00538
RansDecInit
[function]
[call site]
00539
RansDecInit
[function]
[call site]
00540
RansDecInit
[function]
[call site]
00541
RansDecRenorm2
[function]
[call site]
00542
RansDecRenorm2
[function]
[call site]
00543
RansDecRenormSafe
[function]
[call site]
00544
RansDecRenormSafe
[function]
[call site]
00545
RansDecRenormSafe
[function]
[call site]
00546
RansDecRenormSafe
[function]
[call site]
00547
fqz_decompress
[function]
[call site]
00548
uncompress_block_fqz2f
[function]
[call site]
00549
var_get_u32
[function]
[call site]
00550
fqz_read_parameters
[function]
[call site]
00551
read_array
[function]
[call site]
00552
fqz_read_parameters1
[function]
[call site]
00553
read_array
[function]
[call site]
00554
read_array
[function]
[call site]
00555
read_array
[function]
[call site]
00556
fqz_free_parameters
[function]
[call site]
00557
fqz_create_models
[function]
[call site]
00558
htscodecs_tls_alloc
[function]
[call site]
00559
SIMPLE_MODEL256_init
[function]
[call site]
00560
SIMPLE_MODEL256_init
[function]
[call site]
00561
SIMPLE_MODEL2_init
[function]
[call site]
00562
SIMPLE_MODEL2_init
[function]
[call site]
00563
SIMPLE_MODEL256_init
[function]
[call site]
00564
RC_SetInput
[function]
[call site]
00565
RC_StartDecode
[function]
[call site]
00566
realloc
[call site]
00567
realloc
[call site]
00568
decompress_new_read
[function]
[call site]
00569
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00570
RC_GetFreq
[function]
[call site]
00571
RC_Decode
[function]
[call site]
00572
SIMPLE_MODEL256_normalize
[function]
[call site]
00573
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00574
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00575
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00576
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00577
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00578
SIMPLE_MODEL2_normalize
[function]
[call site]
00579
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00580
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00581
fqz_update_ctx
[function]
[call site]
00582
realloc
[call site]
00583
realloc
[call site]
00584
RC_FinishDecode
[function]
[call site]
00585
fqz_destroy_models
[function]
[call site]
00586
htscodecs_tls_free
[function]
[call site]
00587
fqz_free_parameters
[function]
[call site]
00588
fqz_destroy_models
[function]
[call site]
00589
fqz_free_parameters
[function]
[call site]
00590
rans_uncompress_4x16
[function]
[call site]
00591
rans_uncompress_to_4x16
[function]
[call site]
00592
var_get_u32
[function]
[call site]
00593
var_get_u32
[function]
[call site]
00594
rans_uncompress_to_4x16
[function]
[call site]
00595
unstripe
[function]
[call site]
00596
var_get_u32
[function]
[call site]
00597
hts_unpack_meta
[function]
[call site]
00598
var_get_u32
[function]
[call site]
00599
var_get_u32
[function]
[call site]
00600
var_get_u32
[function]
[call site]
00601
var_get_u32
[function]
[call site]
00602
rans_dec_func
[function]
[call site]
00603
pthread_once
[call site]
00604
htscodecs_tls_cpu_init
[function]
[call site]
00605
__get_cpuid_max
[function]
[call site]
00606
not_ancient_darwin
[function]
[call site]
00607
strerror
[call site]
00608
fprintf
[call site]
00609
fprintf
[call site]
00610
rans_dec_func
[function]
[call site]
00611
hts_rle_decode
[function]
[call site]
00612
var_get_u32
[function]
[call site]
00613
hts_unpack
[function]
[call site]
00614
arith_uncompress_to
[function]
[call site]
00615
var_get_u32
[function]
[call site]
00616
var_get_u32
[function]
[call site]
00617
arith_uncompress_to
[function]
[call site]
00618
unstripe
[function]
[call site]
00619
var_get_u32
[function]
[call site]
00620
hts_unpack_meta
[function]
[call site]
00621
var_get_u32
[function]
[call site]
00622
BZ2_bzBuffToBuffDecompress
[call site]
00623
arith_uncompress_O1_RLE
[function]
[call site]
00624
htscodecs_tls_alloc
[function]
[call site]
00625
SIMPLE_MODEL256_init
[function]
[call site]
00626
htscodecs_tls_alloc
[function]
[call site]
00627
htscodecs_tls_free
[function]
[call site]
00628
SIMPLE_MODEL258_init
[function]
[call site]
00629
RC_SetInput
[function]
[call site]
00630
RC_StartDecode
[function]
[call site]
00631
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00632
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00633
SIMPLE_MODEL258_normalize
[function]
[call site]
00634
RC_FinishDecode
[function]
[call site]
00635
htscodecs_tls_free
[function]
[call site]
00636
htscodecs_tls_free
[function]
[call site]
00637
htscodecs_tls_free
[function]
[call site]
00638
htscodecs_tls_free
[function]
[call site]
00639
arith_uncompress_O0_RLE
[function]
[call site]
00640
SIMPLE_MODEL256_init
[function]
[call site]
00641
htscodecs_tls_alloc
[function]
[call site]
00642
SIMPLE_MODEL258_init
[function]
[call site]
00643
RC_SetInput
[function]
[call site]
00644
RC_StartDecode
[function]
[call site]
00645
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00646
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00647
RC_FinishDecode
[function]
[call site]
00648
htscodecs_tls_free
[function]
[call site]
00649
htscodecs_tls_free
[function]
[call site]
00650
arith_uncompress_O1
[function]
[call site]
00651
htscodecs_tls_alloc
[function]
[call site]
00652
SIMPLE_MODEL256_init
[function]
[call site]
00653
RC_SetInput
[function]
[call site]
00654
RC_StartDecode
[function]
[call site]
00655
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00656
RC_FinishDecode
[function]
[call site]
00657
htscodecs_tls_free
[function]
[call site]
00658
htscodecs_tls_free
[function]
[call site]
00659
arith_uncompress_O0
[function]
[call site]
00660
SIMPLE_MODEL256_init
[function]
[call site]
00661
RC_SetInput
[function]
[call site]
00662
RC_StartDecode
[function]
[call site]
00663
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00664
RC_FinishDecode
[function]
[call site]
00665
hts_unpack
[function]
[call site]
00666
tok3_decode_names
[function]
[call site]
00667
create_context
[function]
[call site]
00668
fprintf
[call site]
00669
htscodecs_tls_alloc
[function]
[call site]
00670
uncompressed_size
[function]
[call site]
00671
var_get_u32
[function]
[call site]
00672
var_get_u32
[function]
[call site]
00673
uncompress
[function]
[call site]
00674
var_get_u32
[function]
[call site]
00675
arith_decode
[function]
[call site]
00676
var_get_u32
[function]
[call site]
00677
arith_uncompress_to
[function]
[call site]
00678
rans_decode
[function]
[call site]
00679
var_get_u32
[function]
[call site]
00680
rans_uncompress_to_4x16
[function]
[call site]
00681
decode_name
[function]
[call site]
00682
decode_token_type
[function]
[call site]
00683
decode_token_int
[function]
[call site]
00684
strlen
[call site]
00685
strcpy
[call site]
00686
strlen
[call site]
00687
decode_token_type
[function]
[call site]
00688
decode_token_char
[function]
[call site]
00689
decode_token_alpha
[function]
[call site]
00690
decode_token_int1
[function]
[call site]
00691
decode_token_int
[function]
[call site]
00692
append_uint32_fixed
[function]
[call site]
00693
decode_token_int1
[function]
[call site]
00694
append_uint32_fixed
[function]
[call site]
00695
decode_token_int
[function]
[call site]
00696
append_uint32_var
[function]
[call site]
00697
decode_token_int1
[function]
[call site]
00698
append_uint32_var
[function]
[call site]
00699
append_uint32_var
[function]
[call site]
00700
append_uint32_fixed
[function]
[call site]
00701
realloc
[call site]
00702
free_context
[function]
[call site]
00703
pool_destroy
[function]
[call site]
00704
htscodecs_tls_free
[function]
[call site]
00705
free_context
[function]
[call site]
00706
cram_free_container
[function]
[call site]
00707
cram_free_block
[function]
[call site]
00708
int32_get_blk
[function]
[call site]
00709
cram_free_container
[function]
[call site]
00710
cram_free_block
[function]
[call site]
00711
cram_free_container
[function]
[call site]
00712
cram_free_block
[function]
[call site]
00713
cram_free_block
[function]
[call site]
00714
cram_read_block
[function]
[call site]
00715
cram_free_container
[function]
[call site]
00716
cram_free_block
[function]
[call site]
00717
cram_free_container
[function]
[call site]
00718
hread
[function]
[call site]
00719
cram_free_container
[function]
[call site]
00720
cram_free_container
[function]
[call site]
00721
sam_hdr_init
[function]
[call site]
00722
calloc
[call site]
00723
sam_hdr_add_lines
[function]
[call site]
00724
sam_hdr_fill_hrecs
[function]
[call site]
00725
sam_hrecs_new
[function]
[call site]
00726
calloc
[call site]
00727
kh_init_sam_hrecs_t
[function]
[call site]
00728
calloc
[call site]
00729
kh_init_m_s2i
[function]
[call site]
00730
calloc
[call site]
00731
kh_init_m_s2i
[function]
[call site]
00732
kh_init_m_s2i
[function]
[call site]
00733
pool_create
[function]
[call site]
00734
next_power_2
[function]
[call site]
00735
pool_create
[function]
[call site]
00736
string_pool_create
[function]
[call site]
00737
sam_hrecs_init_type_order
[function]
[call site]
00738
calloc
[call site]
00739
kh_destroy_sam_hrecs_t
[function]
[call site]
00740
pool_destroy
[function]
[call site]
00741
pool_destroy
[function]
[call site]
00742
string_pool_destroy
[function]
[call site]
00743
sam_hrecs_refs_from_targets_array
[function]
[call site]
00744
hts_log
[function]
[call site]
00745
hts_realloc_p
[function]
[call site]
00746
hts_prod_sat2
[function]
[call site]
00747
hts_realloc
[function]
[call site]
00748
__errno_location
[call site]
00749
realloc
[call site]
00750
kh_grow_to_fit_m_s2i
[function]
[call site]
00751
kh_resize_m_s2i
[function]
[call site]
00752
__ac_FNV1a_hash_string
[function]
[call site]
00753
string_dup
[function]
[call site]
00754
strlen
[call site]
00755
string_ndup
[function]
[call site]
00756
string_alloc
[function]
[call site]
00757
new_string_pool
[function]
[call site]
00758
hts_realloc_p
[function]
[call site]
00759
hts_prod_sat2
[function]
[call site]
00760
hts_realloc
[function]
[call site]
00761
hts_malloc
[function]
[call site]
00762
kh_get_s2i
[function]
[call site]
00763
__ac_FNV1a_hash_string
[function]
[call site]
00764
strcmp
[call site]
00765
kh_put_m_s2i
[function]
[call site]
00766
strcmp
[call site]
00767
hts_log
[function]
[call site]
00768
__errno_location
[call site]
00769
strerror
[call site]
00770
hts_log
[function]
[call site]
00771
kh_get_m_s2i
[function]
[call site]
00772
kh_del_m_s2i
[function]
[call site]
00773
sam_hrecs_free
[function]
[call site]
00774
kh_destroy_sam_hrecs_t
[function]
[call site]
00775
kh_destroy_m_s2i
[function]
[call site]
00776
kh_destroy_m_s2i
[function]
[call site]
00777
kh_destroy_m_s2i
[function]
[call site]
00778
pool_destroy
[function]
[call site]
00779
pool_destroy
[function]
[call site]
00780
string_pool_destroy
[function]
[call site]
00781
sam_hrecs_parse_lines
[function]
[call site]
00782
strlen
[call site]
00783
sam_hrecs_error
[function]
[call site]
00784
hts_log
[function]
[call site]
00785
sam_hrecs_parse_single_line
[function]
[call site]
00786
sam_hrecs_error
[function]
[call site]
00787
isalpha_c
[function]
[call site]
00788
__ctype_b_loc
[call site]
00789
sam_hrecs_error
[function]
[call site]
00790
TYPEKEY
[function]
[call site]
00791
pool_alloc
[function]
[call site]
00792
new_pool
[function]
[call site]
00793
hts_realloc_ps
[function]
[call site]
00794
hts_add_sat2
[function]
[call site]
00795
hts_prod_sat2
[function]
[call site]
00796
hts_realloc
[function]
[call site]
00797
hts_malloc_p
[function]
[call site]
00798
kh_put_sam_hrecs_t
[function]
[call site]
00799
kh_resize_sam_hrecs_t
[function]
[call site]
00800
realloc
[call site]
00801
TYPEKEY
[function]
[call site]
00802
parse_comment_line
[function]
[call site]
00803
sam_hrecs_error
[function]
[call site]
00804
warn_if_known_stderr
[function]
[call site]
00805
kmemmem
[function]
[call site]
00806
boyer_moore
[function]
[call site]
00807
memchr
[call site]
00808
ksBM_prep
[function]
[call site]
00809
hts_calloc_ps
[function]
[call site]
00810
hts_add_sat2
[function]
[call site]
00811
hts_calloc
[function]
[call site]
00812
__errno_location
[call site]
00813
calloc
[call site]
00814
calloc
[call site]
00815
karp_rabin
[function]
[call site]
00816
fast_exp
[function]
[call site]
00817
memcmp
[call site]
00818
known_stderr
[function]
[call site]
00819
hts_log
[function]
[call site]
00820
hts_log
[function]
[call site]
00821
kmemmem
[function]
[call site]
00822
known_stderr
[function]
[call site]
00823
kmemmem
[function]
[call site]
00824
known_stderr
[function]
[call site]
00825
pool_alloc
[function]
[call site]
00826
string_ndup
[function]
[call site]
00827
parse_noncomment_line
[function]
[call site]
00828
TYPEKEY
[function]
[call site]
00829
sam_hrecs_error
[function]
[call site]
00830
warn_if_known_stderr
[function]
[call site]
00831
sam_hrecs_error
[function]
[call site]
00832
warn_if_known_stderr
[function]
[call site]
00833
pool_alloc
[function]
[call site]
00834
string_ndup
[function]
[call site]
00835
sam_hrecs_global_list_add
[function]
[call site]
00836
TYPEKEY
[function]
[call site]
00837
__assert_fail
[call site]
00838
sam_hrecs_free_tags
[function]
[call site]
00839
sam_hrecs_free_tags
[function]
[call site]
00840
pool_free
[function]
[call site]
00841
pool_free
[function]
[call site]
00842
TYPEKEY
[function]
[call site]
00843
kh_grow_to_fit_m_s2i
[function]
[call site]
00844
hts_realloc_p
[function]
[call site]
00845
sam_hrecs_update_hashes
[function]
[call site]
00846
TYPEKEY
[function]
[call site]
00847
__assert_fail
[call site]
00848
__assert_fail
[call site]
00849
strtoll
[call site]
00850
__assert_fail
[call site]
00851
hts_log
[function]
[call site]
00852
hts_log
[function]
[call site]
00853
hts_log
[function]
[call site]
00854
kh_get_m_s2i
[function]
[call site]
00855
snprintf
[call site]
00856
sam_hrecs_update
[function]
[call site]
00857
sam_hrecs_vupdate
[function]
[call site]
00858
sam_hrecs_find_key
[function]
[call site]
00859
pool_alloc
[function]
[call site]
00860
strlen
[call site]
00861
hts_add_sat2
[function]
[call site]
00862
string_alloc
[function]
[call site]
00863
snprintf
[call site]
00864
sam_hrecs_add_ref_altnames
[function]
[call site]
00865
kstrtok
[function]
[call site]
00866
strchr
[call site]
00867
strlen
[call site]
00868
string_ndup
[function]
[call site]
00869
kh_put_m_s2i
[function]
[call site]
00870
hts_log
[function]
[call site]
00871
strcmp
[call site]
00872
sam_hrecs_add_ref_altnames
[function]
[call site]
00873
strcmp
[call site]
00874
hts_log
[function]
[call site]
00875
hts_log
[function]
[call site]
00876
hts_realloc_p
[function]
[call site]
00877
kh_put_m_s2i
[function]
[call site]
00878
sam_hrecs_add_ref_altnames
[function]
[call site]
00879
TYPEKEY
[function]
[call site]
00880
sam_hrecs_find_key
[function]
[call site]
00881
hts_log
[function]
[call site]
00882
__assert_fail
[call site]
00883
kh_get_m_s2i
[function]
[call site]
00884
__assert_fail
[call site]
00885
hts_log
[function]
[call site]
00886
hts_realloc_p
[function]
[call site]
00887
kh_put_m_s2i
[function]
[call site]
00888
TYPEKEY
[function]
[call site]
00889
hts_realloc_p
[function]
[call site]
00890
__assert_fail
[call site]
00891
hts_log
[function]
[call site]
00892
kh_get_m_s2i
[function]
[call site]
00893
kh_put_m_s2i
[function]
[call site]
00894
hts_realloc_p
[function]
[call site]
00895
sam_hrecs_free
[function]
[call site]
00896
add_stub_ref_sq_lines
[function]
[call site]
00897
snprintf
[call site]
00898
sam_hrecs_add
[function]
[call site]
00899
sam_hrecs_vadd
[function]
[call site]
00900
TYPEKEY
[function]
[call site]
00901
strncmp
[call site]
00902
sam_hrecs_find_type_id
[function]
[call site]
00903
kh_get_m_s2i
[function]
[call site]
00904
kh_get_m_s2i
[function]
[call site]
00905
kh_get_m_s2i
[function]
[call site]
00906
TYPEKEY
[function]
[call site]
00907
kh_get_sam_hrecs_t
[function]
[call site]
00908
sam_hrecs_vupdate
[function]
[call site]
00909
pool_alloc
[function]
[call site]
00910
kh_put_sam_hrecs_t
[function]
[call site]
00911
__assert_fail
[call site]
00912
sam_hrecs_global_list_add
[function]
[call site]
00913
__assert_fail
[call site]
00914
__assert_fail
[call site]
00915
__assert_fail
[call site]
00916
__assert_fail
[call site]
00917
strncmp
[call site]
00918
pool_alloc
[function]
[call site]
00919
strncmp
[call site]
00920
strlen
[call site]
00921
hts_add_sat2
[function]
[call site]
00922
string_alloc
[function]
[call site]
00923
snprintf
[call site]
00924
strlen
[call site]
00925
string_ndup
[function]
[call site]
00926
strncmp
[call site]
00927
pool_alloc
[function]
[call site]
00928
strncmp
[call site]
00929
strlen
[call site]
00930
hts_add_sat2
[function]
[call site]
00931
string_alloc
[function]
[call site]
00932
snprintf
[call site]
00933
strlen
[call site]
00934
string_ndup
[function]
[call site]
00935
TYPEKEY
[function]
[call site]
00936
sam_hrecs_update_hashes
[function]
[call site]
00937
strncmp
[call site]
00938
hts_log
[function]
[call site]
00939
sam_hrecs_free
[function]
[call site]
00940
rebuild_target_arrays
[function]
[call site]
00941
sam_hdr_update_target_arrays
[function]
[call site]
00942
hts_realloc_p
[function]
[call site]
00943
hts_realloc_p
[function]
[call site]
00944
strcmp
[call site]
00945
strdup
[call site]
00946
kh_get_s2i
[function]
[call site]
00947
kh_del_s2i
[function]
[call site]
00948
kh_init_s2i
[function]
[call site]
00949
calloc
[call site]
00950
kh_put_s2i
[function]
[call site]
00951
kh_resize_s2i
[function]
[call site]
00952
realloc
[call site]
00953
kh_get_s2i
[function]
[call site]
00954
kh_del_s2i
[function]
[call site]
00955
sam_hrecs_parse_lines
[function]
[call site]
00956
rebuild_target_arrays
[function]
[call site]
00957
redact_header_text
[function]
[call site]
00958
__assert_fail
[call site]
00959
sam_hdr_destroy
[function]
[call site]
00960
sam_hrecs_free
[function]
[call site]
00961
kh_destroy_s2i
[function]
[call site]
00962
cram_free_file_def
[function]
[call site]
00963
calloc
[call site]
00964
strncpy
[call site]
00965
cram_init_tables
[function]
[call site]
00966
strrchr
[call site]
00967
strdup
[call site]
00968
refs_create
[function]
[call site]
00969
calloc
[call site]
00970
string_pool_create
[function]
[call site]
00971
kh_init_refs
[function]
[call site]
00972
calloc
[call site]
00973
pthread_mutex_init
[call site]
00974
refs_free
[function]
[call site]
00975
string_pool_destroy
[function]
[call site]
00976
ref_entry_free_seq
[function]
[call site]
00977
mfclose
[function]
[call site]
00978
mfflush
[function]
[call site]
00979
fwrite
[call site]
00980
fflush
[call site]
00981
fseek
[call site]
00982
fwrite
[call site]
00983
fflush
[call site]
00984
ftell
[call site]
00985
fileno
[call site]
00986
ftell
[call site]
00987
ftruncate
[call site]
00988
munmap
[call site]
00989
fclose
[call site]
00990
mfdestroy
[function]
[call site]
00991
kh_destroy_refs
[function]
[call site]
00992
bgzf_close
[function]
[call site]
00993
bgzf_flush
[function]
[call site]
00994
mt_queue
[function]
[call site]
00995
pthread_mutex_lock
[call site]
00996
pool_alloc
[function]
[call site]
00997
pthread_mutex_unlock
[call site]
00998
hts_tpool_dispatch3
[function]
[call site]
00999
pthread_mutex_lock
[call site]
01000
pthread_mutex_unlock
[call site]
01001
__errno_location
[call site]
01002
pthread_mutex_unlock
[call site]
01003
pthread_cond_wait
[call site]
01004
pthread_mutex_unlock
[call site]
01005
wake_next_worker
[function]
[call site]
01006
pthread_mutex_lock
[call site]
01007
__assert_fail
[call site]
01008
__assert_fail
[call site]
01009
pthread_cond_signal
[call site]
01010
pthread_mutex_unlock
[call site]
01011
pthread_mutex_unlock
[call site]
01012
bgzf_encode_level0_func
[function]
[call site]
01013
u16_to_le
[function]
[call site]
01014
u16_to_le
[function]
[call site]
01015
u16_to_le
[function]
[call site]
01016
hts_crc32
[function]
[call site]
01017
crc32
[call site]
01018
u32_to_le
[function]
[call site]
01019
u32_to_le
[function]
[call site]
01020
job_cleanup
[function]
[call site]
01021
pthread_mutex_lock
[call site]
01022
pool_free
[function]
[call site]
01023
pthread_mutex_unlock
[call site]
01024
hts_tpool_dispatch3
[function]
[call site]
01025
bgzf_encode_func
[function]
[call site]
01026
bgzf_compress
[function]
[call site]
01027
u16_to_le
[function]
[call site]
01028
u16_to_le
[function]
[call site]
01029
deflateInit2_
[call site]
01030
bgzf_zerr
[function]
[call site]
01031
hts_log
[function]
[call site]
01032
deflate
[call site]
01033
deflateEnd
[call site]
01034
bgzf_zerr
[function]
[call site]
01035
hts_log
[function]
[call site]
01036
deflateEnd
[call site]
01037
deflateEnd
[call site]
01038
bgzf_zerr
[function]
[call site]
01039
hts_log
[function]
[call site]
01040
packInt16
[function]
[call site]
01041
crc32
[call site]
01042
packInt32
[function]
[call site]
01043
packInt32
[function]
[call site]
01044
job_cleanup
[function]
[call site]
01045
job_cleanup
[function]
[call site]
01046
pthread_mutex_lock
[call site]
01047
pthread_mutex_unlock
[call site]
01048
mt_flush_queue
[function]
[call site]
01049
pthread_mutex_lock
[call site]
01050
hts_tpool_process_is_shutdown
[function]
[call site]
01051
pthread_mutex_lock
[call site]
01052
pthread_mutex_unlock
[call site]
01053
pthread_mutex_unlock
[call site]
01054
hts_usleep
[function]
[call site]
01055
nanosleep
[call site]
01056
pthread_mutex_lock
[call site]
01057
pthread_mutex_unlock
[call site]
01058
hts_tpool_process_flush
[function]
[call site]
01059
pthread_mutex_lock
[call site]
01060
pthread_cond_signal
[call site]
01061
pthread_cond_wait
[call site]
01062
gettimeofday
[call site]
01063
pthread_cond_timedwait
[call site]
01064
gettimeofday
[call site]
01065
pthread_cond_timedwait
[call site]
01066
pthread_mutex_unlock
[call site]
01067
pthread_mutex_lock
[call site]
01068
pthread_mutex_unlock
[call site]
01069
hflush
[function]
[call site]
01070
flush_buffer
[function]
[call site]
01071
__errno_location
[call site]
01072
bgzf_index_add_block
[function]
[call site]
01073
hts_realloc_p
[function]
[call site]
01074
deflate_block
[function]
[call site]
01075
bgzf_compress
[function]
[call site]
01076
bgzf_gzip_compress
[function]
[call site]
01077
deflate
[call site]
01078
bgzf_zerr
[function]
[call site]
01079
hts_log
[function]
[call site]
01080
hts_log
[function]
[call site]
01081
hts_log
[function]
[call site]
01082
bgzf_zerr
[function]
[call site]
01083
hts_log
[function]
[call site]
01084
hwrite
[function]
[call site]
01085
hfile_set_blksize
[function]
[call site]
01086
realloc
[call site]
01087
hwrite2
[function]
[call site]
01088
flush_buffer
[function]
[call site]
01089
__errno_location
[call site]
01090
hwrite2
[function]
[call site]
01091
hts_log
[function]
[call site]
01092
bgzf_close_mt
[function]
[call site]
01093
mt_destroy
[function]
[call site]
01094
pthread_mutex_lock
[call site]
01095
pthread_cond_signal
[call site]
01096
hts_tpool_wake_dispatch
[function]
[call site]
01097
pthread_mutex_lock
[call site]
01098
pthread_cond_signal
[call site]
01099
pthread_mutex_unlock
[call site]
01100
pthread_mutex_unlock
[call site]
01101
hts_tpool_process_is_shutdown
[function]
[call site]
01102
hts_tpool_process_destroy
[function]
[call site]
01103
pthread_mutex_lock
[call site]
01104
pthread_mutex_unlock
[call site]
01105
hts_tpool_process_reset
[function]
[call site]
01106
pthread_mutex_lock
[call site]
01107
pthread_mutex_unlock
[call site]
01108
hts_tpool_delete_result
[function]
[call site]
01109
hts_tpool_process_flush
[function]
[call site]
01110
pthread_mutex_lock
[call site]
01111
pthread_cond_signal
[call site]
01112
pthread_mutex_unlock
[call site]
01113
hts_tpool_delete_result
[function]
[call site]
01114
pthread_mutex_lock
[call site]
01115
hts_tpool_process_detach_locked
[function]
[call site]
01116
hts_tpool_process_shutdown_locked
[function]
[call site]
01117
pthread_cond_broadcast
[call site]
01118
pthread_cond_broadcast
[call site]
01119
pthread_cond_broadcast
[call site]
01120
pthread_cond_broadcast
[call site]
01121
pthread_mutex_unlock
[call site]
01122
pthread_cond_destroy
[call site]
01123
pthread_cond_destroy
[call site]
01124
pthread_cond_destroy
[call site]
01125
pthread_cond_destroy
[call site]
01126
pthread_mutex_unlock
[call site]
01127
pthread_join
[call site]
01128
pthread_mutex_destroy
[call site]
01129
pthread_mutex_destroy
[call site]
01130
pthread_mutex_destroy
[call site]
01131
pthread_cond_destroy
[call site]
01132
pool_free
[function]
[call site]
01133
hts_tpool_destroy
[function]
[call site]
01134
pthread_mutex_lock
[call site]
01135
pthread_cond_signal
[call site]
01136
pthread_mutex_unlock
[call site]
01137
pthread_join
[call site]
01138
pthread_mutex_destroy
[call site]
01139
pthread_cond_destroy
[call site]
01140
pool_destroy
[function]
[call site]
01141
fflush
[call site]
01142
deflate_block
[function]
[call site]
01143
bgzf_zerr
[function]
[call site]
01144
hts_log
[function]
[call site]
01145
bgzf_close_mt
[function]
[call site]
01146
hwrite
[function]
[call site]
01147
hflush
[function]
[call site]
01148
hts_log
[function]
[call site]
01149
bgzf_close_mt
[function]
[call site]
01150
inflateEnd
[call site]
01151
deflateEnd
[call site]
01152
bgzf_zerr
[function]
[call site]
01153
hts_log
[function]
[call site]
01154
hclose
[function]
[call site]
01155
writebuffer_is_nonempty
[function]
[call site]
01156
hflush
[function]
[call site]
01157
__errno_location
[call site]
01158
hfile_destroy
[function]
[call site]
01159
__errno_location
[call site]
01160
bgzf_index_destroy
[function]
[call site]
01161
free_cache
[function]
[call site]
01162
kh_destroy_bgzf_cache
[function]
[call site]
01163
bgzf_clear_private_data
[function]
[call site]
01164
__assert_fail
[call site]
01165
pthread_mutex_destroy
[call site]
01166
pthread_mutex_init
[call site]
01167
pthread_mutex_init
[call site]
01168
pthread_mutex_init
[call site]
01169
pthread_mutex_init
[call site]
01170
cram_new_metrics
[function]
[call site]
01171
calloc
[call site]
01172
kh_init_m_metrics
[function]
[call site]
01173
calloc
[call site]
01174
refs_from_header
[function]
[call site]
01175
sam_hdr_fill_hrecs
[function]
[call site]
01176
hts_realloc_ps
[function]
[call site]
01177
kh_get_refs
[function]
[call site]
01178
__ac_FNV1a_hash_string
[function]
[call site]
01179
strcmp
[call site]
01180
calloc
[call site]
01181
string_dup
[function]
[call site]
01182
sam_hrecs_find_type_id
[function]
[call site]
01183
sam_hrecs_find_key
[function]
[call site]
01184
string_dup
[function]
[call site]
01185
sam_hrecs_find_key
[function]
[call site]
01186
strtoll
[call site]
01187
kh_put_refs
[function]
[call site]
01188
kh_resize_refs
[function]
[call site]
01189
realloc
[call site]
01190
cram_set_option
[function]
[call site]
01191
cram_set_voption
[function]
[call site]
01192
__errno_location
[call site]
01193
strdup
[call site]
01194
refs_free
[function]
[call site]
01195
cram_seek_to_refpos
[function]
[call site]
01196
cram_index_query
[function]
[call site]
01197
cram_seek
[function]
[call site]
01198
cram_drain_rqueue
[function]
[call site]
01199
hts_tpool_process_empty
[function]
[call site]
01200
pthread_mutex_lock
[call site]
01201
pthread_mutex_unlock
[call site]
01202
hts_tpool_next_result_wait
[function]
[call site]
01203
pthread_mutex_lock
[call site]
01204
hts_tpool_next_result_locked
[function]
[call site]
01205
pthread_cond_signal
[call site]
01206
wake_next_worker
[function]
[call site]
01207
gettimeofday
[call site]
01208
pthread_mutex_unlock
[call site]
01209
hts_tpool_process_destroy
[function]
[call site]
01210
pthread_cond_timedwait
[call site]
01211
pthread_mutex_unlock
[call site]
01212
hts_tpool_result_data
[function]
[call site]
01213
cram_free_container
[function]
[call site]
01214
cram_free_slice
[function]
[call site]
01215
hts_tpool_delete_result
[function]
[call site]
01216
cram_free_container
[function]
[call site]
01217
cram_free_slice
[function]
[call site]
01218
cram_free_container
[function]
[call site]
01219
hseek
[function]
[call site]
01220
pthread_mutex_lock
[call site]
01221
pthread_mutex_unlock
[call site]
01222
cram_free_container
[function]
[call site]
01223
cram_free_container
[function]
[call site]
01224
pthread_mutex_lock
[call site]
01225
pthread_mutex_unlock
[call site]
01226
pthread_mutex_lock
[call site]
01227
pthread_mutex_unlock
[call site]
01228
pthread_mutex_lock
[call site]
01229
pthread_mutex_unlock
[call site]
01230
cram_load_reference
[function]
[call site]
01231
refs_load_fai
[function]
[call site]
01232
strlen
[call site]
01233
refs_create
[function]
[call site]
01234
bgzf_close
[function]
[call site]
01235
strstr
[call site]
01236
string_ndup
[function]
[call site]
01237
snprintf
[call site]
01238
strcmp
[call site]
01239
string_ndup
[function]
[call site]
01240
snprintf
[call site]
01241
string_dup
[function]
[call site]
01242
snprintf
[call site]
01243
bgzf_open_ref
[function]
[call site]
01244
strncmp
[call site]
01245
hisremote
[function]
[call site]
01246
find_scheme_handler
[function]
[call site]
01247
snprintf
[call site]
01248
access
[call site]
01249
fai_build
[function]
[call site]
01250
fai_build3
[function]
[call site]
01251
fai_build3_core
[function]
[call site]
01252
bgzf_open
[function]
[call site]
01253
strchr
[call site]
01254
hopen
[function]
[call site]
01255
bgzf_read_init
[function]
[call site]
01256
hclose_abruptly
[function]
[call site]
01257
strchr
[call site]
01258
hopen
[function]
[call site]
01259
bgzf_write_init
[function]
[call site]
01260
__errno_location
[call site]
01261
ed_is_big
[function]
[call site]
01262
strerror
[call site]
01263
hts_log
[function]
[call site]
01264
bgzf_index_build_init
[function]
[call site]
01265
bgzf_index_destroy
[function]
[call site]
01266
calloc
[call site]
01267
hts_log
[function]
[call site]
01268
fai_build_core
[function]
[call site]
01269
calloc
[call site]
01270
kh_init_s
[function]
[call site]
01271
bgzf_getc_
[function]
[call site]
01272
bgzf_getc
[function]
[call site]
01273
bgzf_read_block
[function]
[call site]
01274
hts_tpool_next_result_wait
[function]
[call site]
01275
hts_tpool_result_data
[function]
[call site]
01276
hts_malloc_p
[function]
[call site]
01277
mt_destroy
[function]
[call site]
01278
hts_tpool_delete_result
[function]
[call site]
01279
hts_log
[function]
[call site]
01280
hts_tpool_delete_result
[function]
[call site]
01281
hts_log
[function]
[call site]
01282
hts_tpool_delete_result
[function]
[call site]
01283
bgzf_index_add_block
[function]
[call site]
01284
pthread_mutex_lock
[call site]
01285
pool_free
[function]
[call site]
01286
pthread_mutex_unlock
[call site]
01287
hts_tpool_delete_result
[function]
[call site]
01288
bgzf_htell
[function]
[call site]
01289
pthread_mutex_lock
[call site]
01290
pthread_mutex_unlock
[call site]
01291
htell
[function]
[call site]
01292
hread
[function]
[call site]
01293
__errno_location
[call site]
01294
strerror
[call site]
01295
hts_log
[function]
[call site]
01296
inflate_gzip_block
[function]
[call site]
01297
hread
[function]
[call site]
01298
inflate
[call site]
01299
bgzf_zerr
[function]
[call site]
01300
hts_log
[function]
[call site]
01301
hpeek
[function]
[call site]
01302
inflateReset
[call site]
01303
bgzf_zerr
[function]
[call site]
01304
hts_log
[function]
[call site]
01305
hts_log
[function]
[call site]
01306
hts_log
[function]
[call site]
01307
load_block_from_cache
[function]
[call site]
01308
kh_get_bgzf_cache
[function]
[call site]
01309
hseek
[function]
[call site]
01310
hts_log
[function]
[call site]
01311
exit
[call site]
01312
hread
[function]
[call site]
01313
hts_log
[function]
[call site]
01314
check_header
[function]
[call site]
01315
unpackInt16
[function]
[call site]
01316
unpackInt16
[function]
[call site]
01317
hts_log
[function]
[call site]
01318
hread
[function]
[call site]
01319
calloc
[call site]
01320
inflateInit2_
[call site]
01321
bgzf_zerr
[function]
[call site]
01322
hts_log
[function]
[call site]
01323
inflate_gzip_block
[function]
[call site]
01324
hts_log
[function]
[call site]
01325
unpackInt16
[function]
[call site]
01326
hts_log
[function]
[call site]
01327
hread
[function]
[call site]
01328
hts_log
[function]
[call site]
01329
inflate_block
[function]
[call site]
01330
le_to_u32
[function]
[call site]
01331
bgzf_uncompress
[function]
[call site]
01332
inflateInit2_
[call site]
01333
bgzf_zerr
[function]
[call site]
01334
hts_log
[function]
[call site]
01335
inflate
[call site]
01336
bgzf_zerr
[function]
[call site]
01337
inflateEnd
[call site]
01338
bgzf_zerr
[function]
[call site]
01339
hts_log
[function]
[call site]
01340
inflateEnd
[call site]
01341
bgzf_zerr
[function]
[call site]
01342
hts_log
[function]
[call site]
01343
crc32
[call site]
01344
hts_log
[function]
[call site]
01345
bgzf_zerr
[function]
[call site]
01346
hts_log
[function]
[call site]
01347
bgzf_htell
[function]
[call site]
01348
bgzf_index_add_block
[function]
[call site]
01349
cache_block
[function]
[call site]
01350
kh_del_bgzf_cache
[function]
[call site]
01351
kh_put_bgzf_cache
[function]
[call site]
01352
kh_resize_bgzf_cache
[function]
[call site]
01353
realloc
[call site]
01354
bgzf_htell
[function]
[call site]
01355
hts_log
[function]
[call site]
01356
hts_log
[function]
[call site]
01357
bgzf_getc_
[function]
[call site]
01358
hts_log
[function]
[call site]
01359
__ctype_b_loc
[call site]
01360
hts_log
[function]
[call site]
01361
fai_insert_index
[function]
[call site]
01362
hts_log
[function]
[call site]
01363
hts_log
[function]
[call site]
01364
hts_log
[function]
[call site]
01365
hts_log
[function]
[call site]
01366
strdup
[call site]
01367
kh_put_s
[function]
[call site]
01368
kh_resize_s
[function]
[call site]
01369
__ac_FNV1a_hash_string
[function]
[call site]
01370
hts_log
[function]
[call site]
01371
hts_realloc_p
[function]
[call site]
01372
hts_log
[function]
[call site]
01373
__ctype_b_loc
[call site]
01374
kputc
[function]
[call site]
01375
bgzf_getc_
[function]
[call site]
01376
kputsn
[function]
[call site]
01377
hts_log
[function]
[call site]
01378
bgzf_getc_
[function]
[call site]
01379
bgzf_utell
[function]
[call site]
01380
bgzf_getc_
[function]
[call site]
01381
bgzf_utell
[function]
[call site]
01382
hts_log
[function]
[call site]
01383
isgraph_
[function]
[call site]
01384
bgzf_getc_
[function]
[call site]
01385
hts_log
[function]
[call site]
01386
bgzf_getc_
[function]
[call site]
01387
bgzf_utell
[function]
[call site]
01388
hts_log
[function]
[call site]
01389
hts_log
[function]
[call site]
01390
isgraph_
[function]
[call site]
01391
bgzf_getc_
[function]
[call site]
01392
hts_log
[function]
[call site]
01393
hts_log
[function]
[call site]
01394
fai_insert_index
[function]
[call site]
01395
hts_log
[function]
[call site]
01396
fai_destroy
[function]
[call site]
01397
kh_destroy_s
[function]
[call site]
01398
bgzf_close
[function]
[call site]
01399
hts_log
[function]
[call site]
01400
ksprintf
[function]
[call site]
01401
ksprintf
[function]
[call site]
01402
bgzf_index_dump
[function]
[call site]
01403
hts_log
[function]
[call site]
01404
__errno_location
[call site]
01405
get_name_suffix
[function]
[call site]
01406
strlen
[call site]
01407
snprintf
[call site]
01408
hopen
[function]
[call site]
01409
bgzf_index_dump_hfile
[function]
[call site]
01410
hts_log
[function]
[call site]
01411
__errno_location
[call site]
01412
bgzf_flush
[function]
[call site]
01413
hwrite_uint64
[function]
[call site]
01414
ed_is_big
[function]
[call site]
01415
ed_swap_8
[function]
[call site]
01416
hwrite
[function]
[call site]
01417
hwrite_uint64
[function]
[call site]
01418
hwrite_uint64
[function]
[call site]
01419
__errno_location
[call site]
01420
strerror
[call site]
01421
hts_log
[function]
[call site]
01422
hclose
[function]
[call site]
01423
__errno_location
[call site]
01424
strerror
[call site]
01425
hts_log
[function]
[call site]
01426
hclose_abruptly
[function]
[call site]
01427
hts_log
[function]
[call site]
01428
bgzf_close
[function]
[call site]
01429
__errno_location
[call site]
01430
strerror
[call site]
01431
hts_log
[function]
[call site]
01432
hopen
[function]
[call site]
01433
__errno_location
[call site]
01434
strerror
[call site]
01435
hts_log
[function]
[call site]
01436
fai_save
[function]
[call site]
01437
kh_get_s
[function]
[call site]
01438
__assert_fail
[call site]
01439
snprintf
[call site]
01440
snprintf
[call site]
01441
hputs
[function]
[call site]
01442
strlen
[call site]
01443
hputs2
[function]
[call site]
01444
hwrite2
[function]
[call site]
01445
hputs
[function]
[call site]
01446
__errno_location
[call site]
01447
strerror
[call site]
01448
hts_log
[function]
[call site]
01449
hclose
[function]
[call site]
01450
__errno_location
[call site]
01451
strerror
[call site]
01452
hts_log
[function]
[call site]
01453
fai_destroy
[function]
[call site]
01454
__errno_location
[call site]
01455
bgzf_close
[function]
[call site]
01456
fai_destroy
[function]
[call site]
01457
__errno_location
[call site]
01458
bgzf_open
[function]
[call site]
01459
perror
[call site]
01460
bgzf_index_load
[function]
[call site]
01461
get_name_suffix
[function]
[call site]
01462
hopen
[function]
[call site]
01463
bgzf_index_load_hfile
[function]
[call site]
01464
calloc
[call site]
01465
hread_uint64
[function]
[call site]
01466
hread
[function]
[call site]
01467
ed_is_big
[function]
[call site]
01468
ed_swap_8p
[function]
[call site]
01469
hread_uint64
[function]
[call site]
01470
hread_uint64
[function]
[call site]
01471
__errno_location
[call site]
01472
strerror
[call site]
01473
hts_log
[function]
[call site]
01474
hclose
[function]
[call site]
01475
__errno_location
[call site]
01476
strerror
[call site]
01477
hts_log
[function]
[call site]
01478
hclose_abruptly
[function]
[call site]
01479
hts_log
[function]
[call site]
01480
bgzf_close
[function]
[call site]
01481
hts_log
[function]
[call site]
01482
hopen
[function]
[call site]
01483
hts_log
[function]
[call site]
01484
perror
[call site]
01485
hgets
[function]
[call site]
01486
__errno_location
[call site]
01487
hgetln
[function]
[call site]
01488
hgetdelim
[function]
[call site]
01489
__errno_location
[call site]
01490
writebuffer_is_nonempty
[function]
[call site]
01491
__errno_location
[call site]
01492
memchr
[call site]
01493
refill_buffer
[function]
[call site]
01494
isspace_c
[function]
[call site]
01495
string_dup
[function]
[call site]
01496
isspace_c
[function]
[call site]
01497
strtoll
[call site]
01498
isspace_c
[function]
[call site]
01499
strtoll
[call site]
01500
isspace_c
[function]
[call site]
01501
strtol
[call site]
01502
isspace_c
[function]
[call site]
01503
strtol
[call site]
01504
kh_put_refs
[function]
[call site]
01505
hts_realloc_p
[function]
[call site]
01506
hclose
[function]
[call site]
01507
hclose_abruptly
[function]
[call site]
01508
refs_free
[function]
[call site]
01509
sanitise_SQ_lines
[function]
[call site]
01510
kh_get_refs
[function]
[call site]
01511
strcmp
[call site]
01512
__assert_fail
[call site]
01513
hts_log
[function]
[call site]
01514
refs_free
[function]
[call site]
01515
refs_create
[function]
[call site]
01516
refs_from_header
[function]
[call site]
01517
refs2id
[function]
[call site]
01518
calloc
[call site]
01519
kh_get_refs
[function]
[call site]
01520
__isoc99_sscanf
[call site]
01521
hts_log
[function]
[call site]
01522
hts_log
[function]
[call site]
01523
__errno_location
[call site]
01524
cram_init_tables
[function]
[call site]
01525
hts_tpool_init
[function]
[call site]
01526
hts_malloc_p
[function]
[call site]
01527
hts_malloc_p
[function]
[call site]
01528
pthread_mutexattr_init
[call site]
01529
pthread_mutexattr_settype
[call site]
01530
pthread_mutex_init
[call site]
01531
pthread_mutexattr_destroy
[call site]
01532
pthread_mutex_lock
[call site]
01533
pthread_attr_init
[call site]
01534
pthread_attr_getstacksize
[call site]
01535
pthread_attr_setstacksize
[call site]
01536
pthread_cond_init
[call site]
01537
pthread_create
[call site]
01538
tpool_worker
[function]
[call site]
01539
pthread_mutex_lock
[call site]
01540
__assert_fail
[call site]
01541
pthread_cond_wait
[call site]
01542
__assert_fail
[call site]
01543
pthread_cond_broadcast
[call site]
01544
pthread_cond_signal
[call site]
01545
pthread_mutex_unlock
[call site]
01546
hts_tpool_add_result
[function]
[call site]
01547
pthread_mutex_lock
[call site]
01548
pthread_cond_signal
[call site]
01549
pthread_mutex_unlock
[call site]
01550
pthread_mutex_unlock
[call site]
01551
hts_tpool_process_shutdown
[function]
[call site]
01552
pthread_mutex_lock
[call site]
01553
hts_tpool_process_shutdown_locked
[function]
[call site]
01554
pthread_mutex_unlock
[call site]
01555
__assert_fail
[call site]
01556
pthread_cond_broadcast
[call site]
01557
pthread_mutex_unlock
[call site]
01558
pthread_mutex_lock
[call site]
01559
hts_tpool_process_destroy
[function]
[call site]
01560
pthread_mutex_unlock
[call site]
01561
pthread_mutex_lock
[call site]
01562
hts_tpool_process_shutdown_locked
[function]
[call site]
01563
pthread_mutex_unlock
[call site]
01564
pthread_mutex_unlock
[call site]
01565
pthread_attr_destroy
[call site]
01566
__errno_location
[call site]
01567
__errno_location
[call site]
01568
strerror
[call site]
01569
hts_log
[function]
[call site]
01570
pthread_mutex_unlock
[call site]
01571
pthread_join
[call site]
01572
pthread_cond_destroy
[call site]
01573
pthread_mutex_destroy
[call site]
01574
pthread_attr_destroy
[call site]
01575
__errno_location
[call site]
01576
hts_tpool_process_init
[function]
[call site]
01577
pthread_cond_init
[call site]
01578
pthread_cond_init
[call site]
01579
pthread_cond_init
[call site]
01580
pthread_cond_init
[call site]
01581
hts_tpool_process_attach
[function]
[call site]
01582
pthread_mutex_lock
[call site]
01583
__assert_fail
[call site]
01584
pthread_mutex_unlock
[call site]
01585
hts_tpool_size
[function]
[call site]
01586
hts_tpool_process_init
[function]
[call site]
01587
hts_log
[function]
[call site]
01588
__errno_location
[call site]
01589
bgzf_hopen
[function]
[call site]
01590
__errno_location
[call site]
01591
hts_process_opts
[function]
[call site]
01592
hts_parse_opt_list
[function]
[call site]
01593
strncpy
[call site]
01594
hts_opt_add
[function]
[call site]
01595
strdup
[call site]
01596
strchr
[call site]
01597
strcmp
[call site]
01598
strcmp
[call site]
01599
atoi
[call site]
01600
strcmp
[call site]
01601
strcmp
[call site]
01602
atoi
[call site]
01603
strcmp
[call site]
01604
strcmp
[call site]
01605
atoi
[call site]
01606
strcmp
[call site]
01607
strcmp
[call site]
01608
atoi
[call site]
01609
strcmp
[call site]
01610
strcmp
[call site]
01611
atoi
[call site]
01612
strcmp
[call site]
01613
strcmp
[call site]
01614
atoi
[call site]
01615
strcmp
[call site]
01616
strcmp
[call site]
01617
atoi
[call site]
01618
strcmp
[call site]
01619
strcmp
[call site]
01620
atoi
[call site]
01621
strcmp
[call site]
01622
strcmp
[call site]
01623
atoi
[call site]
01624
strcmp
[call site]
01625
strcmp
[call site]
01626
atoi
[call site]
01627
strcmp
[call site]
01628
strcmp
[call site]
01629
atoi
[call site]
01630
strcmp
[call site]
01631
strcmp
[call site]
01632
atoi
[call site]
01633
strcmp
[call site]
01634
strcmp
[call site]
01635
atoi
[call site]
01636
strcmp
[call site]
01637
strcmp
[call site]
01638
atoi
[call site]
01639
strcmp
[call site]
01640
atoi
[call site]
01641
strcmp
[call site]
01642
strcmp
[call site]
01643
strcmp
[call site]
01644
strcmp
[call site]
01645
strcmp
[call site]
01646
strcmp
[call site]
01647
strcmp
[call site]
01648
strcmp
[call site]
01649
strcmp
[call site]
01650
strcmp
[call site]
01651
strcmp
[call site]
01652
strcmp
[call site]
01653
strcmp
[call site]
01654
strcmp
[call site]
01655
atoi
[call site]
01656
strcmp
[call site]
01657
strcmp
[call site]
01658
atoi
[call site]
01659
strcmp
[call site]
01660
strcmp
[call site]
01661
strtol
[call site]
01662
hts_log
[function]
[call site]
01663
strcmp
[call site]
01664
strcmp
[call site]
01665
strtol
[call site]
01666
strcmp
[call site]
01667
strcmp
[call site]
01668
strtol
[call site]
01669
strcmp
[call site]
01670
strcmp
[call site]
01671
strcmp
[call site]
01672
strcmp
[call site]
01673
atoi
[call site]
01674
strcmp
[call site]
01675
strcmp
[call site]
01676
atoi
[call site]
01677
strcmp
[call site]
01678
strcmp
[call site]
01679
strtol
[call site]
01680
strcmp
[call site]
01681
strcmp
[call site]
01682
strtol
[call site]
01683
strcmp
[call site]
01684
strcmp
[call site]
01685
strcmp
[call site]
01686
strcmp
[call site]
01687
strcmp
[call site]
01688
strcmp
[call site]
01689
strcmp
[call site]
01690
strcmp
[call site]
01691
strcmp
[call site]
01692
strcmp
[call site]
01693
strcmp
[call site]
01694
strcmp
[call site]
01695
strcmp
[call site]
01696
strcmp
[call site]
01697
strcmp
[call site]
01698
strcmp
[call site]
01699
hts_log
[function]
[call site]
01700
hts_opt_apply
[function]
[call site]
01701
strdup
[call site]
01702
hts_set_opt
[function]
[call site]
01703
hts_set_threads
[function]
[call site]
01704
sam_set_threads
[function]
[call site]
01705
hts_tpool_init
[function]
[call site]
01706
sam_set_thread_pool
[function]
[call site]
01707
sam_state_create
[function]
[call site]
01708
calloc
[call site]
01709
pthread_mutex_init
[call site]
01710
pthread_mutex_init
[call site]
01711
pthread_cond_init
[call site]
01712
hts_tpool_size
[function]
[call site]
01713
hts_tpool_process_init
[function]
[call site]
01714
sam_state_destroy
[function]
[call site]
01715
pthread_mutex_lock
[call site]
01716
pthread_cond_signal
[call site]
01717
hts_tpool_wake_dispatch
[function]
[call site]
01718
hts_tpool_wake_dispatch
[function]
[call site]
01719
pthread_mutex_unlock
[call site]
01720
hts_usleep
[function]
[call site]
01721
pthread_mutex_lock
[call site]
01722
pthread_mutex_unlock
[call site]
01723
hts_tpool_dispatch
[function]
[call site]
01724
hts_tpool_dispatch3
[function]
[call site]
01725
sam_format_worker
[function]
[call site]
01726
pthread_mutex_lock
[call site]
01727
pthread_mutex_unlock
[call site]
01728
calloc
[call site]
01729
sam_state_err
[function]
[call site]
01730
pthread_mutex_lock
[call site]
01731
pthread_mutex_unlock
[call site]
01732
sam_format1_append
[function]
[call site]
01733
kputsn_
[function]
[call site]
01734
__errno_location
[call site]
01735
ks_resize
[function]
[call site]
01736
kputc_
[function]
[call site]
01737
ks_resize
[function]
[call site]
01738
kputw
[function]
[call site]
01739
ks_resize
[function]
[call site]
01740
kputuw
[function]
[call site]
01741
ks_resize
[function]
[call site]
01742
ks_resize
[function]
[call site]
01743
kputc_
[function]
[call site]
01744
kputs
[function]
[call site]
01745
kputc_
[function]
[call site]
01746
kputsn_
[function]
[call site]
01747
kputll
[function]
[call site]
01748
ks_resize
[function]
[call site]
01749
kputuw
[function]
[call site]
01750
kputc_
[function]
[call site]
01751
kputw
[function]
[call site]
01752
kputc_
[function]
[call site]
01753
kputw
[function]
[call site]
01754
kputc_
[function]
[call site]
01755
kputc_
[function]
[call site]
01756
kputc_
[function]
[call site]
01757
kputsn_
[function]
[call site]
01758
kputsn_
[function]
[call site]
01759
kputs
[function]
[call site]
01760
kputc_
[function]
[call site]
01761
kputll
[function]
[call site]
01762
kputc_
[function]
[call site]
01763
kputll
[function]
[call site]
01764
kputc_
[function]
[call site]
01765
ks_resize
[function]
[call site]
01766
nibble2base
[function]
[call site]
01767
add33
[function]
[call site]
01768
kputsn_
[function]
[call site]
01769
kputc_
[function]
[call site]
01770
sam_format_aux1
[function]
[call site]
01771
kputsn_
[function]
[call site]
01772
kputc_
[function]
[call site]
01773
kputsn_
[function]
[call site]
01774
kputw
[function]
[call site]
01775
kputsn_
[function]
[call site]
01776
kputw
[function]
[call site]
01777
kputsn_
[function]
[call site]
01778
le_to_u16
[function]
[call site]
01779
kputuw
[function]
[call site]
01780
kputsn_
[function]
[call site]
01781
le_to_i16
[function]
[call site]
01782
le_to_u16
[function]
[call site]
01783
kputw
[function]
[call site]
01784
kputsn_
[function]
[call site]
01785
le_to_u32
[function]
[call site]
01786
kputuw
[function]
[call site]
01787
kputsn_
[function]
[call site]
01788
le_to_i32
[function]
[call site]
01789
le_to_u32
[function]
[call site]
01790
kputw
[function]
[call site]
01791
kputsn_
[function]
[call site]
01792
kputc_
[function]
[call site]
01793
le_to_float
[function]
[call site]
01794
le_to_u32
[function]
[call site]
01795
ksprintf
[function]
[call site]
01796
le_to_double
[function]
[call site]
01797
le_to_u64
[function]
[call site]
01798
ksprintf
[function]
[call site]
01799
kputc_
[function]
[call site]
01800
kputc_
[function]
[call site]
01801
kputc_
[function]
[call site]
01802
kputsn
[function]
[call site]
01803
le_to_u32
[function]
[call site]
01804
kputsn_
[function]
[call site]
01805
kputc
[function]
[call site]
01806
ks_expand
[function]
[call site]
01807
__errno_location
[call site]
01808
ks_resize
[function]
[call site]
01809
kputw
[function]
[call site]
01810
ks_expand
[function]
[call site]
01811
kputuw
[function]
[call site]
01812
ks_expand
[function]
[call site]
01813
le_to_i16
[function]
[call site]
01814
kputw
[function]
[call site]
01815
ks_expand
[function]
[call site]
01816
le_to_u16
[function]
[call site]
01817
kputuw
[function]
[call site]
01818
ks_expand
[function]
[call site]
01819
le_to_i32
[function]
[call site]
01820
kputw
[function]
[call site]
01821
ks_expand
[function]
[call site]
01822
le_to_u32
[function]
[call site]
01823
kputuw
[function]
[call site]
01824
ks_expand
[function]
[call site]
01825
le_to_float
[function]
[call site]
01826
kputd
[function]
[call site]
01827
__errno_location
[call site]
01828
hts_log
[function]
[call site]
01829
__errno_location
[call site]
01830
kputsn
[function]
[call site]
01831
hts_log
[function]
[call site]
01832
__errno_location
[call site]
01833
hts_log
[function]
[call site]
01834
__errno_location
[call site]
01835
__errno_location
[call site]
01836
sam_state_err
[function]
[call site]
01837
kputc
[function]
[call site]
01838
pthread_mutex_lock
[call site]
01839
pthread_mutex_unlock
[call site]
01840
hts_tpool_process_flush
[function]
[call site]
01841
pthread_mutex_lock
[call site]
01842
pthread_mutex_unlock
[call site]
01843
hts_tpool_process_empty
[function]
[call site]
01844
hts_usleep
[function]
[call site]
01845
pthread_mutex_lock
[call site]
01846
hts_tpool_process_is_shutdown
[function]
[call site]
01847
pthread_mutex_unlock
[call site]
01848
hts_tpool_process_shutdown
[function]
[call site]
01849
pthread_join
[call site]
01850
hts_tpool_process_destroy
[function]
[call site]
01851
hts_tpool_destroy
[function]
[call site]
01852
pthread_mutex_destroy
[call site]
01853
pthread_mutex_destroy
[call site]
01854
pthread_cond_destroy
[call site]
01855
sam_free_sp_bams
[function]
[call site]
01856
sam_free_sp_bams
[function]
[call site]
01857
bam_hdr_destroy
[function]
[call site]
01858
sam_hdr_destroy
[function]
[call site]
01859
bgzf_thread_pool
[function]
[call site]
01860
calloc
[call site]
01861
hts_tpool_size
[function]
[call site]
01862
hts_tpool_process_init
[function]
[call site]
01863
hts_tpool_process_ref_incr
[function]
[call site]
01864
pthread_mutex_lock
[call site]
01865
pthread_mutex_unlock
[call site]
01866
pool_create
[function]
[call site]
01867
pthread_mutex_init
[call site]
01868
pthread_mutex_init
[call site]
01869
pthread_mutex_init
[call site]
01870
pthread_cond_init
[call site]
01871
pthread_create
[call site]
01872
hts_tpool_destroy
[function]
[call site]
01873
hts_get_bgzfp
[function]
[call site]
01874
bgzf_mt
[function]
[call site]
01875
hts_tpool_init
[function]
[call site]
01876
bgzf_thread_pool
[function]
[call site]
01877
hts_tpool_destroy
[function]
[call site]
01878
hts_set_opt
[function]
[call site]
01879
hts_hfile
[function]
[call site]
01880
bgzf_hfile
[function]
[call site]
01881
cram_hfile
[function]
[call site]
01882
bgzf_hfile
[function]
[call site]
01883
hfile_set_blksize
[function]
[call site]
01884
hts_log
[function]
[call site]
01885
hts_log
[function]
[call site]
01886
hts_set_thread_pool
[function]
[call site]
01887
sam_set_thread_pool
[function]
[call site]
01888
hts_get_bgzfp
[function]
[call site]
01889
bgzf_thread_pool
[function]
[call site]
01890
hts_set_opt
[function]
[call site]
01891
hts_set_cache_size
[function]
[call site]
01892
hts_get_bgzfp
[function]
[call site]
01893
bgzf_set_cache_size
[function]
[call site]
01894
fastq_state_set
[function]
[call site]
01895
fastq_state_init
[function]
[call site]
01896
strcmp
[call site]
01900
kh_init_tag
[function]
[call site]
01901
calloc
[call site]
01902
strlen
[call site]
01903
hts_log
[function]
[call site]
01904
kh_put_tag
[function]
[call site]
01905
kh_resize_tag
[function]
[call site]
01906
realloc
[call site]
01907
strncpy
[call site]
01908
strcmp
[call site]
01909
isalpha_c
[function]
[call site]
01910
isalnum_c
[function]
[call site]
01911
strncpy
[call site]
01912
hts_log
[function]
[call site]
01913
regfree
[call site]
01914
regcomp
[call site]
01915
hts_log
[function]
[call site]
01916
fastq_state_set
[function]
[call site]
01917
fastq_state_set
[function]
[call site]
01918
cram_set_option
[function]
[call site]
01919
hts_set_filter_expression
[function]
[call site]
01920
hts_filter_free
[function]
[call site]
01921
regfree
[call site]
01922
hts_filter_init
[function]
[call site]
01923
calloc
[call site]
01924
strlen
[call site]
01925
hts_malloc_ps
[function]
[call site]
01926
hts_add_sat2
[function]
[call site]
01927
hts_prod_sat2
[function]
[call site]
01928
hts_malloc
[function]
[call site]
01929
cram_set_voption
[function]
[call site]
01930
hts_set_opt
[function]
[call site]
01931
hts_opt_free
[function]
[call site]
01932
hts_opt_free
[function]
[call site]
01933
hclose_abruptly
[function]
[call site]
01934
hts_log
[function]
[call site]
01935
hclose_abruptly
[function]
[call site]
01936
hclose
[function]
[call site]
01937
abort
[call site]
01938
hts_close
[function]
[call site]
01939
__errno_location
[call site]
01940
bgzf_close
[function]
[call site]
01941
cram_eof
[function]
[call site]
01942
hts_log
[function]
[call site]
01943
cram_close
[function]
[call site]
01944
cram_update_curr_slice
[function]
[call site]
01945
cram_flush_container_mt
[function]
[call site]
01946
pthread_mutex_lock
[call site]
01947
reset_metrics
[function]
[call site]
01948
pthread_mutex_unlock
[call site]
01949
hts_tpool_process_flush
[function]
[call site]
01950
pthread_mutex_lock
[call site]
01951
pthread_mutex_unlock
[call site]
01952
cram_flush_container
[function]
[call site]
01953
cram_encode_container
[function]
[call site]
01954
pthread_mutex_lock
[call site]
01955
hts_log
[function]
[call site]
01956
hts_log
[function]
[call site]
01957
pthread_mutex_unlock
[call site]
01958
pthread_mutex_unlock
[call site]
01959
cram_get_ref
[function]
[call site]
01960
pthread_mutex_lock
[call site]
01961
hts_log
[function]
[call site]
01962
pthread_mutex_unlock
[call site]
01963
pthread_mutex_lock
[call site]
01964
hts_log
[function]
[call site]
01965
cram_populate_ref
[function]
[call site]
01966
getenv
[call site]
01967
getenv
[call site]
01968
hts_log
[function]
[call site]
01969
sam_hrecs_find_type_id
[function]
[call site]
01970
sam_hrecs_find_key
[function]
[call site]
01971
hts_log
[function]
[call site]
01972
expand_cache_path
[function]
[call site]
01973
strchr
[call site]
01974
strncpy
[call site]
01975
strlen
[call site]
01976
strcpy
[call site]
01977
strtol
[call site]
01978
strlen
[call site]
01979
strncpy
[call site]
01980
strlen
[call site]
01981
strcpy
[call site]
01982
strlen
[call site]
01983
strcpy
[call site]
01984
stat
[call site]
01985
stat
[call site]
01986
bgzf_open
[function]
[call site]
01987
string_dup
[function]
[call site]
01988
bgzf_close
[function]
[call site]
01989
open_path_mfile
[function]
[call site]
01990
getenv
[call site]
01991
tokenise_search_path
[function]
[call site]
01992
strlen
[call site]
01993
strncmp
[call site]
01994
strncmp
[call site]
01995
strncmp
[call site]
01996
strncmp
[call site]
01997
strncmp
[call site]
01998
strncmp
[call site]
01999
strncmp
[call site]
02000
strncmp
[call site]
02001
strncmp
[call site]
02002
strncmp
[call site]
02003
find_file_url
[function]
[call site]
02004
expand_path
[function]
[call site]
02005
strlen
[call site]
02006
strlen
[call site]
02007
hts_log
[function]
[call site]
02008
strchr
[call site]
02009
strtol
[call site]
02010
hopen
[function]
[call site]
02011
__errno_location
[call site]
02012
__errno_location
[call site]
02013
strerror
[call site]
02014
hts_log
[function]
[call site]
02015
mfcreate
[function]
[call site]
02016
hread
[function]
[call site]
02017
mfwrite
[function]
[call site]
02018
realloc
[call site]
02019
hclose_abruptly
[function]
[call site]
02020
hclose
[function]
[call site]
02021
__errno_location
[call site]
02022
strerror
[call site]
02023
hts_log
[function]
[call site]
02024
mrewind
[function]
[call site]
02025
mfdestroy
[function]
[call site]
02026
strncmp
[call site]
02027
hisremote
[function]
[call site]
02028
find_file_url
[function]
[call site]
02029
find_file_dir
[function]
[call site]
02030
expand_path
[function]
[call site]
02031
is_file
[function]
[call site]
02032
stat
[call site]
02033
mfopen
[function]
[call site]
02034
fopen
[call site]
02035
mfreopen
[function]
[call site]
02036
strchr
[call site]
02037
strchr
[call site]
02038
strchr
[call site]
02039
strchr
[call site]
02040
strchr
[call site]
02041
strchr
[call site]
02042
strchr
[call site]
02043
mfcreate
[function]
[call site]
02044
mfmmap
[function]
[call site]
02045
mfload
[function]
[call site]
02049
stat
[call site]
02050
realloc
[call site]
02051
fread
[call site]
02052
feof
[call site]
02053
fseek
[call site]
02054
mfcreate
[function]
[call site]
02055
hts_log
[function]
[call site]
02056
fseek
[call site]
02057
strlen
[call site]
02058
strcpy
[call site]
02059
strrchr
[call site]
02060
find_file_dir
[function]
[call site]
02061
mfsteal
[function]
[call site]
02062
mfdetach
[function]
[call site]
02063
mfflush
[function]
[call site]
02064
fclose
[call site]
02065
mfdestroy
[function]
[call site]
02066
sam_hrecs_find_key
[function]
[call site]
02067
strstr
[call site]
02068
strncmp
[call site]
02069
hts_log
[function]
[call site]
02070
strncmp
[call site]
02071
bgzf_close
[function]
[call site]
02072
refs_load_fai
[function]
[call site]
02073
sanitise_SQ_lines
[function]
[call site]
02074
bgzf_close
[function]
[call site]
02075
refs2id
[function]
[call site]
02076
expand_cache_path
[function]
[call site]
02077
hts_log
[function]
[call site]
02078
mkdir_prefix
[function]
[call site]
02079
strrchr
[call site]
02080
is_directory
[function]
[call site]
02081
stat
[call site]
02082
mkdir
[call site]
02083
chmod
[call site]
02084
mkdir_prefix
[function]
[call site]
02085
mkdir
[call site]
02086
chmod
[call site]
02087
hts_open_tmpfile
[function]
[call site]
02088
getpid
[call site]
02089
time
[call site]
02090
clock
[call site]
02091
ks_clear
[function]
[call site]
02092
ksprintf
[function]
[call site]
02093
hopen
[function]
[call site]
02094
__errno_location
[call site]
02095
perror
[call site]
02096
hts_md5_init
[function]
[call site]
02097
hts_md5_reset
[function]
[call site]
02098
hclose_abruptly
[function]
[call site]
02099
unlink
[call site]
02100
hts_md5_update
[function]
[call site]
02101
body
[function]
[call site]
02102
body
[function]
[call site]
02103
hts_md5_final
[function]
[call site]
02104
body
[function]
[call site]
02105
body
[function]
[call site]
02106
hts_md5_destroy
[function]
[call site]
02107
hts_md5_hex
[function]
[call site]
02108
strncmp
[call site]
02109
hts_log
[function]
[call site]
02110
hclose_abruptly
[function]
[call site]
02111
unlink
[call site]
02112
hwrite
[function]
[call site]
02113
hclose
[function]
[call site]
02114
chmod
[call site]
02115
rename
[call site]
02116
__errno_location
[call site]
02117
strerror
[call site]
02118
hts_log
[function]
[call site]
02119
unlink
[call site]
02120
hts_log
[function]
[call site]
02121
hts_log
[function]
[call site]
02122
pthread_mutex_unlock
[call site]
02123
pthread_mutex_unlock
[call site]
02124
cram_ref_incr_locked
[function]
[call site]
02125
cram_ref_incr_locked
[function]
[call site]
02126
cram_ref_load
[function]
[call site]
02127
__assert_fail
[call site]
02128
__assert_fail
[call site]
02129
ref_entry_free_seq
[function]
[call site]
02130
strcmp
[call site]
02131
bgzf_close
[function]
[call site]
02132
bgzf_open_ref
[function]
[call site]
02133
load_ref_portion
[function]
[call site]
02134
bgzf_useek
[function]
[call site]
02135
hseek
[function]
[call site]
02136
bgzf_read_block
[function]
[call site]
02137
bgzf_seek_common
[function]
[call site]
02138
pthread_mutex_lock
[call site]
02139
pthread_cond_signal
[call site]
02140
hts_tpool_wake_dispatch
[function]
[call site]
02141
pthread_cond_wait
[call site]
02142
pthread_cond_signal
[call site]
02143
abort
[call site]
02144
__errno_location
[call site]
02145
pthread_mutex_unlock
[call site]
02146
pthread_mutex_unlock
[call site]
02147
hseek
[function]
[call site]
02148
bgzf_read_block
[function]
[call site]
02149
__assert_fail
[call site]
02150
perror
[call site]
02151
bgzf_read
[function]
[call site]
02152
__assert_fail
[call site]
02153
bgzf_read_block
[function]
[call site]
02154
hts_log
[function]
[call site]
02155
bgzf_htell
[function]
[call site]
02156
hts_log
[function]
[call site]
02157
bgzf_htell
[function]
[call site]
02158
perror
[call site]
02159
isspace_c
[function]
[call site]
02160
isspace_c
[function]
[call site]
02161
isspace_c
[function]
[call site]
02162
hts_log
[function]
[call site]
02163
toupper_c
[function]
[call site]
02164
toupper
[call site]
02165
pthread_mutex_unlock
[call site]
02166
pthread_mutex_unlock
[call site]
02167
cram_ref_incr_locked
[function]
[call site]
02168
pthread_mutex_unlock
[call site]
02169
pthread_mutex_unlock
[call site]
02170
pthread_mutex_unlock
[call site]
02171
pthread_mutex_unlock
[call site]
02172
strcmp
[call site]
02173
bgzf_close
[function]
[call site]
02174
bgzf_open_ref
[function]
[call site]
02175
pthread_mutex_unlock
[call site]
02176
pthread_mutex_unlock
[call site]
02177
load_ref_portion
[function]
[call site]
02178
pthread_mutex_unlock
[call site]
02179
pthread_mutex_unlock
[call site]
02180
pthread_mutex_unlock
[call site]
02181
pthread_mutex_unlock
[call site]
02182
hts_log
[function]
[call site]
02183
hts_log
[function]
[call site]
02184
pthread_mutex_lock
[call site]
02185
pthread_mutex_unlock
[call site]
02186
hts_log
[function]
[call site]
02187
hts_log
[function]
[call site]
02188
hts_log
[function]
[call site]
02189
hts_log
[function]
[call site]
02190
pthread_mutex_lock
[call site]
02191
pthread_mutex_unlock
[call site]
02192
validate_md5
[function]
[call site]
02193
sam_hrecs_find_type_id
[function]
[call site]
02194
sam_hrecs_find_key
[function]
[call site]
02195
hts_md5_init
[function]
[call site]
02196
hts_md5_update
[function]
[call site]
02197
hts_md5_final
[function]
[call site]
02198
hts_md5_destroy
[function]
[call site]
02199
hts_md5_hex
[function]
[call site]
02200
strcmp
[call site]
02201
hts_log
[function]
[call site]
02202
hts_log
[function]
[call site]
02203
cram_ref_incr
[function]
[call site]
02204
pthread_mutex_lock
[call site]
02205
cram_ref_incr_locked
[function]
[call site]
02206
pthread_mutex_unlock
[call site]
02207
cram_get_ref
[function]
[call site]
02208
validate_md5
[function]
[call site]
02209
hts_log
[function]
[call site]
02210
__assert_fail
[call site]
02211
lossy_read_names
[function]
[call site]
02212
kh_init_m_s2u64
[function]
[call site]
02213
calloc
[call site]
02214
expected_template_count
[function]
[call site]
02215
bam_aux_get
[function]
[call site]
02216
bam_aux_first
[function]
[call site]
02217
__errno_location
[call site]
02218
skip_aux
[function]
[call site]
02219
aux_type2size
[function]
[call site]
02220
memchr
[call site]
02221
aux_type2size
[function]
[call site]
02222
le_to_u32
[function]
[call site]
02223
bam_aux_next
[function]
[call site]
02224
skip_aux
[function]
[call site]
02225
__errno_location
[call site]
02226
hts_log
[function]
[call site]
02227
__errno_location
[call site]
02228
hts_log
[function]
[call site]
02229
__errno_location
[call site]
02230
bam_data_end
[function]
[call site]
02231
bam_aux2i_end
[function]
[call site]
02232
__errno_location
[call site]
02233
__errno_location
[call site]
02234
__errno_location
[call site]
02235
le_to_i16
[function]
[call site]
02236
le_to_u16
[function]
[call site]
02237
__errno_location
[call site]
02238
le_to_u16
[function]
[call site]
02239
__errno_location
[call site]
02240
le_to_i32
[function]
[call site]
02241
le_to_u32
[function]
[call site]
02242
__errno_location
[call site]
02243
le_to_u32
[function]
[call site]
02244
__errno_location
[call site]
02245
bam_aux_get
[function]
[call site]
02246
kh_put_m_s2u64
[function]
[call site]
02247
kh_resize_m_s2u64
[function]
[call site]
02248
realloc
[call site]
02249
__ac_FNV1a_hash_string
[function]
[call site]
02250
strcmp
[call site]
02251
kh_get_m_s2u64
[function]
[call site]
02252
kh_destroy_m_s2u64
[function]
[call site]
02253
cram_generate_reference
[function]
[call site]
02254
extend_ref
[function]
[call site]
02255
realloc
[call site]
02256
hts_realloc_p
[function]
[call site]
02257
hts_log
[function]
[call site]
02258
cram_add_to_ref
[function]
[call site]
02259
bam_aux_get
[function]
[call site]
02260
cram_add_to_ref_MD
[function]
[call site]
02261
bam_cigar2rlen
[function]
[call site]
02262
extend_ref
[function]
[call site]
02263
__ctype_b_loc
[call site]
02264
hts_str2uint
[function]
[call site]
02265
extend_ref
[function]
[call site]
02266
next_cigar_op
[function]
[call site]
02267
hts_log
[function]
[call site]
02268
__ctype_b_loc
[call site]
02269
extend_ref
[function]
[call site]
02270
next_cigar_op
[function]
[call site]
02271
hts_log
[function]
[call site]
02272
extend_ref
[function]
[call site]
02273
next_cigar_op
[function]
[call site]
02274
hts_log
[function]
[call site]
02275
extend_ref
[function]
[call site]
02276
hts_log
[function]
[call site]
02277
hts_log
[function]
[call site]
02278
pthread_mutex_lock
[call site]
02279
pthread_mutex_unlock
[call site]
02280
pthread_mutex_lock
[call site]
02281
pthread_mutex_unlock
[call site]
02282
cram_ref_decr
[function]
[call site]
02283
pthread_mutex_lock
[call site]
02284
cram_ref_decr_locked
[function]
[call site]
02285
__assert_fail
[call site]
02286
ref_entry_free_seq
[function]
[call site]
02287
pthread_mutex_unlock
[call site]
02288
cram_get_ref
[function]
[call site]
02289
hts_log
[function]
[call site]
02290
validate_md5
[function]
[call site]
02291
process_one_read
[function]
[call site]
02292
bam_aux_get
[function]
[call site]
02293
bam_aux_get
[function]
[call site]
02294
cram_stats_add
[function]
[call site]
02295
kh_init_m_i2i
[function]
[call site]
02296
kh_put_m_i2i
[function]
[call site]
02297
kh_resize_m_i2i
[function]
[call site]
02298
cram_stats_add
[function]
[call site]
02299
cram_stats_add
[function]
[call site]
02300
block_grow
[function]
[call site]
02301
block_resize
[function]
[call site]
02302
block_resize_exact
[function]
[call site]
02303
realloc
[call site]
02304
block_grow
[function]
[call site]
02305
nibble2base
[function]
[call site]
02306
hts_log
[function]
[call site]
02307
hts_realloc_p
[function]
[call site]
02308
hts_log
[function]
[call site]
02309
kputuw
[function]
[call site]
02310
ks_resize
[function]
[call site]
02311
ks_resize
[function]
[call site]
02312
kputc
[function]
[call site]
02313
ks_resize
[function]
[call site]
02314
cram_add_substitution
[function]
[call site]
02315
cram_stats_add
[function]
[call site]
02316
cram_stats_add
[function]
[call site]
02317
cram_stats_add
[function]
[call site]
02318
block_append_char
[function]
[call site]
02319
block_grow
[function]
[call site]
02320
cram_add_feature
[function]
[call site]
02321
hts_realloc_p
[function]
[call site]
02322
cram_stats_add
[function]
[call site]
02323
cram_stats_add
[function]
[call site]
02324
cram_stats_add
[function]
[call site]
02325
cram_add_bases
[function]
[call site]
02326
cram_add_feature
[function]
[call site]
02327
cram_add_base
[function]
[call site]
02328
cram_stats_add
[function]
[call site]
02329
cram_stats_add
[function]
[call site]
02330
block_append_char
[function]
[call site]
02331
cram_add_feature
[function]
[call site]
02332
cram_add_base
[function]
[call site]
02333
kputuw
[function]
[call site]
02334
kputc_
[function]
[call site]
02335
ks_resize
[function]
[call site]
02336
kputsn
[function]
[call site]
02337
ks_resize
[function]
[call site]
02338
cram_add_deletion
[function]
[call site]
02339
cram_stats_add
[function]
[call site]
02340
cram_add_feature
[function]
[call site]
02341
cram_add_skip
[function]
[call site]
02342
cram_stats_add
[function]
[call site]
02343
cram_add_feature
[function]
[call site]
02344
cram_add_insertion
[function]
[call site]
02345
cram_stats_add
[function]
[call site]
02346
block_append
[function]
[call site]
02347
block_grow
[function]
[call site]
02348
block_append_char
[function]
[call site]
02349
block_append_char
[function]
[call site]
02350
cram_add_feature
[function]
[call site]
02351
cram_add_quality
[function]
[call site]
02352
cram_stats_add
[function]
[call site]
02353
block_append_char
[function]
[call site]
02354
cram_add_feature
[function]
[call site]
02355
cram_add_softclip
[function]
[call site]
02356
block_append
[function]
[call site]
02357
block_append_char
[function]
[call site]
02358
block_append
[function]
[call site]
02359
block_append_char
[function]
[call site]
02360
block_append_char
[function]
[call site]
02361
cram_add_feature
[function]
[call site]
02362
cram_add_quality
[function]
[call site]
02363
cram_add_quality
[function]
[call site]
02364
cram_add_hardclip
[function]
[call site]
02365
cram_stats_add
[function]
[call site]
02366
cram_add_feature
[function]
[call site]
02367
cram_add_pad
[function]
[call site]
02368
cram_stats_add
[function]
[call site]
02369
cram_add_feature
[function]
[call site]
02370
hts_log
[function]
[call site]
02371
hts_log
[function]
[call site]
02372
cram_stats_add
[function]
[call site]
02373
kputuw
[function]
[call site]
02374
cram_stats_add
[function]
[call site]
02375
cram_encode_aux
[function]
[call site]
02376
bam_data_end
[function]
[call site]
02377
hts_malloc_ps
[function]
[call site]
02378
hts_add_sat2
[function]
[call site]
02379
hts_prod_sat2
[function]
[call site]
02380
hts_malloc
[function]
[call site]
02381
hts_log
[function]
[call site]
02382
sam_hrecs_find_rg
[function]
[call site]
02383
kh_get_m_s2i
[function]
[call site]
02384
strncasecmp
[call site]
02385
hts_log
[function]
[call site]
02386
bam_aux2i_end
[function]
[call site]
02387
hts_log
[function]
[call site]
02388
block_append
[function]
[call site]
02389
kh_put_m_tagmap
[function]
[call site]
02390
kh_resize_m_tagmap
[function]
[call site]
02391
realloc
[call site]
02392
pthread_mutex_lock
[call site]
02393
kh_put_m_metrics
[function]
[call site]
02394
kh_resize_m_metrics
[function]
[call site]
02395
realloc
[call site]
02396
pthread_mutex_unlock
[call site]
02397
cram_new_metrics
[function]
[call site]
02398
kh_del_m_metrics
[function]
[call site]
02399
pthread_mutex_unlock
[call site]
02400
pthread_mutex_unlock
[call site]
02401
calloc
[call site]
02402
cram_encoder_init
[function]
[call site]
02403
cram_encoding2str
[function]
[call site]
02404
hts_log
[function]
[call site]
02405
cram_encoding2str
[function]
[call site]
02406
hts_log
[function]
[call site]
02407
abort
[call site]
02408
cram_stats_add
[function]
[call site]
02409
cram_stats_encoding
[function]
[call site]
02410
hts_realloc_p
[function]
[call site]
02411
hts_realloc_p
[function]
[call site]
02412
hts_realloc_p
[function]
[call site]
02413
hts_realloc_p
[function]
[call site]
02414
__assert_fail
[call site]
02415
cram_encoder_init
[function]
[call site]
02416
cram_stats_add
[function]
[call site]
02417
cram_stats_encoding
[function]
[call site]
02418
cram_encoder_init
[function]
[call site]
02419
cram_stats_add
[function]
[call site]
02420
cram_stats_encoding
[function]
[call site]
02421
cram_encoder_init
[function]
[call site]
02422
cram_encoder_init
[function]
[call site]
02423
hts_log
[function]
[call site]
02424
pthread_mutex_lock
[call site]
02425
pthread_mutex_unlock
[call site]
02426
cram_new_block
[function]
[call site]
02427
block_append_char
[function]
[call site]
02428
cram_new_block
[function]
[call site]
02429
block_append
[function]
[call site]
02430
cram_new_block
[function]
[call site]
02431
block_append
[function]
[call site]
02432
cram_new_block
[function]
[call site]
02433
block_append
[function]
[call site]
02434
cram_new_block
[function]
[call site]
02435
hts_log
[function]
[call site]
02436
cram_new_block
[function]
[call site]
02437
hts_log
[function]
[call site]
02438
hts_log
[function]
[call site]
02439
block_append_char
[function]
[call site]
02440
kh_put_m_s2i
[function]
[call site]
02441
kh_resize_m_s2i
[function]
[call site]
02442
__ac_FNV1a_hash_string
[function]
[call site]
02443
string_ndup
[function]
[call site]
02444
cram_stats_add
[function]
[call site]
02445
sam_hrecs_find_rg
[function]
[call site]
02446
cram_stats_add
[function]
[call site]
02447
block_grow
[function]
[call site]
02448
block_grow
[function]
[call site]
02449
cram_stats_add
[function]
[call site]
02450
kh_put_m_s2i
[function]
[call site]
02451
string_ndup
[function]
[call site]
02452
cram_stats_add
[function]
[call site]
02453
cram_stats_add
[function]
[call site]
02454
cram_stats_del
[function]
[call site]
02455
__assert_fail
[call site]
02456
kh_get_m_i2i
[function]
[call site]
02457
kh_del_m_i2i
[function]
[call site]
02458
hts_log
[function]
[call site]
02459
cram_stats_del
[function]
[call site]
02460
cram_stats_del
[function]
[call site]
02461
cram_stats_del
[function]
[call site]
02462
cram_stats_add
[function]
[call site]
02463
cram_stats_del
[function]
[call site]
02464
cram_stats_add
[function]
[call site]
02465
cram_stats_add
[function]
[call site]
02466
cram_stats_add
[function]
[call site]
02467
cram_stats_add
[function]
[call site]
02468
cram_stats_add
[function]
[call site]
02469
cram_stats_add
[function]
[call site]
02470
cram_stats_add
[function]
[call site]
02471
cram_stats_add
[function]
[call site]
02472
add_read_names
[function]
[call site]
02473
block_append
[function]
[call site]
02474
cram_stats_add
[function]
[call site]
02475
hts_prod_sat2
[function]
[call site]
02476
hts_calloc
[function]
[call site]
02477
__assert_fail
[call site]
02478
cram_ref_decr
[function]
[call site]
02479
pthread_mutex_lock
[call site]
02480
pthread_mutex_unlock
[call site]
02481
cram_stats_encoding
[function]
[call site]
02482
pthread_mutex_lock
[call site]
02483
pthread_mutex_unlock
[call site]
02484
hts_log
[function]
[call site]
02485
hts_md5_init
[function]
[call site]
02486
hts_md5_update
[function]
[call site]
02487
hts_md5_final
[function]
[call site]
02488
hts_md5_destroy
[function]
[call site]
02489
cram_stats_encoding
[function]
[call site]
02490
cram_encoder_init
[function]
[call site]
02491
cram_stats_encoding
[function]
[call site]
02492
cram_encoder_init
[function]
[call site]
02493
cram_stats_encoding
[function]
[call site]
02494
cram_encoder_init
[function]
[call site]
02495
cram_encoder_init
[function]
[call site]
02496
cram_encoder_init
[function]
[call site]
02497
cram_stats_encoding
[function]
[call site]
02498
cram_encoder_init
[function]
[call site]
02499
cram_stats_encoding
[function]
[call site]
02500
cram_encoder_init
[function]
[call site]
02501
cram_stats_encoding
[function]
[call site]
02502
cram_encoder_init
[function]
[call site]
02503
cram_stats_encoding
[function]
[call site]
02504
cram_encoder_init
[function]
[call site]
02505
cram_stats_encoding
[function]
[call site]
02506
cram_encoder_init
[function]
[call site]
02507
cram_stats_encoding
[function]
[call site]
02508
cram_encoder_init
[function]
[call site]
02509
cram_stats_encoding
[function]
[call site]
02510
cram_encoder_init
[function]
[call site]
02511
cram_stats_encoding
[function]
[call site]
02512
cram_encoder_init
[function]
[call site]
02513
cram_stats_encoding
[function]
[call site]
02514
cram_encoder_init
[function]
[call site]
02515
cram_stats_encoding
[function]
[call site]
02516
cram_encoder_init
[function]
[call site]
02517
cram_stats_encoding
[function]
[call site]
02518
cram_encoder_init
[function]
[call site]
02519
cram_stats_encoding
[function]
[call site]
02520
cram_encoder_init
[function]
[call site]
02521
cram_stats_encoding
[function]
[call site]
02522
cram_encoder_init
[function]
[call site]
02523
cram_encoder_init
[function]
[call site]
02524
cram_stats_encoding
[function]
[call site]
02525
cram_encoder_init
[function]
[call site]
02526
cram_stats_encoding
[function]
[call site]
02527
cram_encoder_init
[function]
[call site]
02528
cram_stats_encoding
[function]
[call site]
02529
cram_encoder_init
[function]
[call site]
02530
cram_stats_encoding
[function]
[call site]
02531
cram_encoder_init
[function]
[call site]
02532
cram_stats_encoding
[function]
[call site]
02533
cram_encoder_init
[function]
[call site]
02534
cram_stats_encoding
[function]
[call site]
02535
cram_encoder_init
[function]
[call site]
02536
cram_stats_encoding
[function]
[call site]
02537
cram_encoder_init
[function]
[call site]
02538
cram_stats_encoding
[function]
[call site]
02539
cram_encoder_init
[function]
[call site]
02540
cram_encoder_init
[function]
[call site]
02541
cram_encoder_init
[function]
[call site]
02542
cram_encoder_init
[function]
[call site]
02543
cram_encoder_init
[function]
[call site]
02544
hts_log
[function]
[call site]
02545
cram_encode_slice
[function]
[call site]
02546
hts_prod_sat2
[function]
[call site]
02547
hts_calloc_ps
[function]
[call site]
02548
hts_add_sat2
[function]
[call site]
02549
hts_calloc
[function]
[call site]
02550
hts_malloc_p
[function]
[call site]
02551
cram_new_block
[function]
[call site]
02552
cram_new_block
[function]
[call site]
02553
cram_new_block
[function]
[call site]
02554
block_append
[function]
[call site]
02555
cram_allocate_block
[function]
[call site]
02556
cram_new_block
[function]
[call site]
02557
cram_new_block
[function]
[call site]
02558
cram_allocate_block
[function]
[call site]
02559
cram_allocate_block
[function]
[call site]
02560
cram_encode_slice_read
[function]
[call site]
02561
hts_log
[function]
[call site]
02562
cram_free_block
[function]
[call site]
02563
cram_free_block
[function]
[call site]
02564
cram_free_block
[function]
[call site]
02565
cram_free_block
[function]
[call site]
02566
cram_compress_slice
[function]
[call site]
02567
cram_compress_block2
[function]
[call site]
02568
cram_compress_block3
[function]
[call site]
02569
pthread_mutex_lock
[call site]
02570
pthread_mutex_unlock
[call site]
02571
cram_compress_by_method
[function]
[call site]
02572
zlib_mem_deflate
[function]
[call site]
02573
deflateInit2_
[call site]
02574
hts_log
[function]
[call site]
02575
hts_log
[function]
[call site]
02576
deflate
[call site]
02577
hts_log
[function]
[call site]
02578
deflate
[call site]
02579
hts_log
[function]
[call site]
02580
deflateEnd
[call site]
02581
hts_log
[function]
[call site]
02582
BZ2_bzBuffToBuffCompress
[call site]
02583
fqz_compress
[function]
[call site]
02584
compress_block_fqz2f
[function]
[call site]
02585
fqz_pick_parameters
[function]
[call site]
02586
calloc
[call site]
02587
fqz_qual_stats
[function]
[call site]
02588
calloc
[call site]
02589
memcmp
[call site]
02590
fast_log
[function]
[call site]
02591
fast_log
[function]
[call site]
02592
fast_log
[function]
[call site]
02593
fast_log
[function]
[call site]
02594
fast_log
[function]
[call site]
02595
fast_log
[function]
[call site]
02596
fast_log
[function]
[call site]
02597
log
[call site]
02598
log
[call site]
02599
log
[call site]
02600
log
[call site]
02601
log
[call site]
02602
log
[call site]
02603
log
[call site]
02604
log
[call site]
02605
log
[call site]
02606
var_put_u32
[function]
[call site]
02607
var_put_u32_safe
[function]
[call site]
02608
fqz_store_parameters
[function]
[call site]
02609
store_array
[function]
[call site]
02610
fqz_store_parameters1
[function]
[call site]
02611
store_array
[function]
[call site]
02612
store_array
[function]
[call site]
02613
store_array
[function]
[call site]
02614
fqz_create_models
[function]
[call site]
02615
RC_SetOutput
[function]
[call site]
02616
RC_SetOutputEnd
[function]
[call site]
02617
RC_StartEncode
[function]
[call site]
02618
compress_new_read
[function]
[call site]
02619
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02620
RC_Encode
[function]
[call site]
02621
RC_ShiftLowCheck
[function]
[call site]
02622
SIMPLE_MODEL256_normalize
[function]
[call site]
02623
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02624
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02625
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02626
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02627
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02628
SIMPLE_MODEL2_normalize
[function]
[call site]
02629
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02630
memcmp
[call site]
02631
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02632
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02633
mm_prefetch
[function]
[call site]
02634
fqz_update_ctx
[function]
[call site]
02635
mm_prefetch
[function]
[call site]
02636
fqz_update_ctx
[function]
[call site]
02637
mm_prefetch
[function]
[call site]
02638
fqz_update_ctx
[function]
[call site]
02639
mm_prefetch
[function]
[call site]
02640
fqz_update_ctx
[function]
[call site]
02641
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02642
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02643
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02644
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02645
mm_prefetch
[function]
[call site]
02646
fqz_update_ctx
[function]
[call site]
02647
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02648
RC_FinishEncode
[function]
[call site]
02649
RC_ShiftLowCheck
[function]
[call site]
02650
RC_OutSize
[function]
[call site]
02651
fqz_destroy_models
[function]
[call site]
02652
fqz_free_parameters
[function]
[call site]
02653
lzma_mem_deflate
[function]
[call site]
02654
lzma_stream_buffer_bound
[call site]
02655
lzma_easy_buffer_encode
[call site]
02656
rans_compress
[function]
[call site]
02657
rans_compress_O1
[function]
[call site]
02658
rans_compress_O0
[function]
[call site]
02659
hist8
[function]
[call site]
02660
htscodecs_tls_calloc
[function]
[call site]
02661
htscodecs_tls_free
[function]
[call site]
02662
__assert_fail
[call site]
02663
RansEncSymbolInit
[function]
[call site]
02664
__assert_fail
[call site]
02665
__assert_fail
[call site]
02666
RansEncInit
[function]
[call site]
02667
RansEncInit
[function]
[call site]
02668
RansEncInit
[function]
[call site]
02669
RansEncInit
[function]
[call site]
02670
RansEncPutSymbol
[function]
[call site]
02671
RansEncPutSymbol
[function]
[call site]
02672
RansEncPutSymbol
[function]
[call site]
02673
RansEncPutSymbol
[function]
[call site]
02674
RansEncPutSymbol
[function]
[call site]
02675
RansEncPutSymbol
[function]
[call site]
02676
RansEncPutSymbol
[function]
[call site]
02677
RansEncFlush
[function]
[call site]
02678
RansEncFlush
[function]
[call site]
02679
RansEncFlush
[function]
[call site]
02680
RansEncFlush
[function]
[call site]
02681
htscodecs_tls_alloc
[function]
[call site]
02682
hist1_4
[function]
[call site]
02683
htscodecs_tls_calloc
[function]
[call site]
02684
htscodecs_tls_free
[function]
[call site]
02685
RansEncSymbolInit
[function]
[call site]
02686
__assert_fail
[call site]
02687
RansEncInit
[function]
[call site]
02688
RansEncInit
[function]
[call site]
02689
RansEncInit
[function]
[call site]
02690
RansEncInit
[function]
[call site]
02691
RansEncPutSymbol
[function]
[call site]
02692
RansEncPutSymbol4
[function]
[call site]
02693
__assert_fail
[call site]
02694
__assert_fail
[call site]
02695
__assert_fail
[call site]
02696
__assert_fail
[call site]
02697
RansEncPutSymbol
[function]
[call site]
02698
RansEncPutSymbol
[function]
[call site]
02699
RansEncPutSymbol
[function]
[call site]
02700
RansEncPutSymbol
[function]
[call site]
02701
RansEncFlush
[function]
[call site]
02702
RansEncFlush
[function]
[call site]
02703
RansEncFlush
[function]
[call site]
02704
RansEncFlush
[function]
[call site]
02705
htscodecs_tls_free
[function]
[call site]
02706
rans_compress_O0
[function]
[call site]
02707
rans_compress_4x16
[function]
[call site]
02708
rans_compress_to_4x16
[function]
[call site]
02709
rans_compress_bound_4x16
[function]
[call site]
02710
var_put_u32
[function]
[call site]
02711
rans_compress_to_4x16
[function]
[call site]
02712
realloc
[call site]
02713
var_put_u32
[function]
[call site]
02714
var_put_u32
[function]
[call site]
02715
var_put_u32
[function]
[call site]
02716
hts_pack
[function]
[call site]
02717
var_put_u32
[function]
[call site]
02718
hts_rle_encode
[function]
[call site]
02719
rle_find_syms
[function]
[call site]
02720
var_put_u32
[function]
[call site]
02721
var_put_u32
[function]
[call site]
02722
var_put_u32
[function]
[call site]
02723
rans_enc_func
[function]
[call site]
02724
pthread_once
[call site]
02725
htscodecs_tls_cpu_init
[function]
[call site]
02726
strerror
[call site]
02727
fprintf
[call site]
02728
fprintf
[call site]
02729
var_put_u32
[function]
[call site]
02730
var_put_u32
[function]
[call site]
02731
var_put_u32
[function]
[call site]
02732
rans_enc_func
[function]
[call site]
02733
arith_compress_to
[function]
[call site]
02734
arith_compress_bound
[function]
[call site]
02735
var_put_u32
[function]
[call site]
02736
var_put_u32
[function]
[call site]
02737
arith_compress_to
[function]
[call site]
02738
arith_compress_to
[function]
[call site]
02739
var_put_u32
[function]
[call site]
02740
var_put_u32
[function]
[call site]
02741
hts_pack
[function]
[call site]
02742
var_put_u32
[function]
[call site]
02743
BZ2_bzBuffToBuffCompress
[call site]
02744
arith_compress_O0_RLE
[function]
[call site]
02745
arith_compress_bound
[function]
[call site]
02746
SIMPLE_MODEL256_init
[function]
[call site]
02747
htscodecs_tls_alloc
[function]
[call site]
02748
SIMPLE_MODEL258_init
[function]
[call site]
02749
RC_SetOutput
[function]
[call site]
02750
RC_SetOutputEnd
[function]
[call site]
02751
RC_StartEncode
[function]
[call site]
02752
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02753
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02754
SIMPLE_MODEL258_normalize
[function]
[call site]
02755
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02756
RC_FinishEncode
[function]
[call site]
02757
htscodecs_tls_free
[function]
[call site]
02758
RC_OutSize
[function]
[call site]
02759
htscodecs_tls_free
[function]
[call site]
02760
arith_compress_O1_RLE
[function]
[call site]
02761
arith_compress_bound
[function]
[call site]
02762
htscodecs_tls_alloc
[function]
[call site]
02763
SIMPLE_MODEL256_init
[function]
[call site]
02764
htscodecs_tls_alloc
[function]
[call site]
02765
htscodecs_tls_free
[function]
[call site]
02766
SIMPLE_MODEL258_init
[function]
[call site]
02767
RC_SetOutput
[function]
[call site]
02768
RC_SetOutputEnd
[function]
[call site]
02769
RC_StartEncode
[function]
[call site]
02770
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02771
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02772
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02773
RC_FinishEncode
[function]
[call site]
02774
htscodecs_tls_free
[function]
[call site]
02775
htscodecs_tls_free
[function]
[call site]
02776
RC_OutSize
[function]
[call site]
02777
htscodecs_tls_free
[function]
[call site]
02778
htscodecs_tls_free
[function]
[call site]
02779
arith_compress_O1
[function]
[call site]
02780
arith_compress_bound
[function]
[call site]
02781
htscodecs_tls_alloc
[function]
[call site]
02782
SIMPLE_MODEL256_init
[function]
[call site]
02783
RC_SetOutput
[function]
[call site]
02784
RC_SetOutputEnd
[function]
[call site]
02785
RC_StartEncode
[function]
[call site]
02786
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02787
RC_FinishEncode
[function]
[call site]
02788
htscodecs_tls_free
[function]
[call site]
02789
RC_OutSize
[function]
[call site]
02790
htscodecs_tls_free
[function]
[call site]
02791
arith_compress_O0
[function]
[call site]
02792
arith_compress_bound
[function]
[call site]
02793
SIMPLE_MODEL256_init
[function]
[call site]
02794
RC_SetOutput
[function]
[call site]
02795
RC_SetOutputEnd
[function]
[call site]
02796
RC_StartEncode
[function]
[call site]
02797
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02798
RC_FinishEncode
[function]
[call site]
02799
RC_OutSize
[function]
[call site]
02800
tok3_encode_names
[function]
[call site]
02801
create_context
[function]
[call site]
02802
build_trie
[function]
[call site]
02803
calloc
[call site]
02804
pool_create
[function]
[call site]
02805
pool_alloc
[function]
[call site]
02806
new_pool
[function]
[call site]
02807
realloc
[call site]
02808
free_context
[function]
[call site]
02809
free_context
[function]
[call site]
02810
encode_name
[function]
[call site]
02811
search_trie
[function]
[call site]
02812
__ctype_b_loc
[call site]
02813
__ctype_b_loc
[call site]
02814
__ctype_b_loc
[call site]
02815
__ctype_b_loc
[call site]
02816
__ctype_b_loc
[call site]
02817
calloc
[call site]
02818
__ctype_b_loc
[call site]
02819
strlen
[call site]
02820
encode_token_dup
[function]
[call site]
02821
encode_token_int
[function]
[call site]
02822
encode_token_type
[function]
[call site]
02823
descriptor_grow
[function]
[call site]
02824
realloc
[call site]
02825
descriptor_grow
[function]
[call site]
02826
encode_token_diff
[function]
[call site]
02827
encode_token_int
[function]
[call site]
02828
encode_token_char
[function]
[call site]
02829
encode_token_type
[function]
[call site]
02830
descriptor_grow
[function]
[call site]
02831
memcmp
[call site]
02832
encode_token_match
[function]
[call site]
02833
encode_token_type
[function]
[call site]
02834
encode_token_alpha
[function]
[call site]
02835
encode_token_type
[function]
[call site]
02836
descriptor_grow
[function]
[call site]
02837
encode_token_alpha
[function]
[call site]
02838
__ctype_b_loc
[call site]
02839
__ctype_b_loc
[call site]
02840
__ctype_b_loc
[call site]
02841
memcmp
[call site]
02842
encode_token_match
[function]
[call site]
02843
encode_token_alpha
[function]
[call site]
02844
encode_token_alpha
[function]
[call site]
02845
__ctype_b_loc
[call site]
02846
encode_token_match
[function]
[call site]
02847
encode_token_int1
[function]
[call site]
02848
encode_token_type
[function]
[call site]
02849
descriptor_grow
[function]
[call site]
02850
encode_token_int1_
[function]
[call site]
02851
descriptor_grow
[function]
[call site]
02852
encode_token_int
[function]
[call site]
02853
encode_token_int1_
[function]
[call site]
02854
encode_token_int
[function]
[call site]
02855
__ctype_b_loc
[call site]
02856
__ctype_b_loc
[call site]
02857
encode_token_match
[function]
[call site]
02858
encode_token_int1
[function]
[call site]
02859
encode_token_int
[function]
[call site]
02860
encode_token_int
[function]
[call site]
02861
encode_token_match
[function]
[call site]
02862
encode_token_char
[function]
[call site]
02863
encode_token_char
[function]
[call site]
02864
encode_token_end
[function]
[call site]
02865
encode_token_type
[function]
[call site]
02866
realloc
[call site]
02867
free_context
[function]
[call site]
02868
arith_compress_bound
[function]
[call site]
02869
free_context
[function]
[call site]
02870
compress
[function]
[call site]
02871
arith_encode
[function]
[call site]
02872
arith_compress_to
[function]
[call site]
02873
var_put_u32
[function]
[call site]
02874
rans_encode
[function]
[call site]
02875
rans_compress_to_4x16
[function]
[call site]
02876
var_put_u32
[function]
[call site]
02877
free_context
[function]
[call site]
02878
memcmp
[call site]
02879
free_context
[function]
[call site]
02880
free_context
[function]
[call site]
02881
pthread_mutex_lock
[call site]
02882
pthread_mutex_unlock
[call site]
02883
pthread_mutex_unlock
[call site]
02884
cram_compress_by_method
[function]
[call site]
02885
cram_block_method2str
[function]
[call site]
02886
hts_log
[function]
[call site]
02887
pthread_mutex_lock
[call site]
02888
pthread_mutex_unlock
[call site]
02889
cram_compress_block3
[function]
[call site]
02890
cram_compress_by_method
[function]
[call site]
02891
hts_log
[function]
[call site]
02892
cram_block_method2str
[function]
[call site]
02893
hts_log
[function]
[call site]
02894
pthread_mutex_lock
[call site]
02895
pthread_mutex_unlock
[call site]
02896
cram_compress_block2
[function]
[call site]
02897
cram_compress_block2
[function]
[call site]
02898
cram_compress_block2
[function]
[call site]
02899
cram_compress_block2
[function]
[call site]
02900
cram_compress_block2
[function]
[call site]
02901
cram_compress_block2
[function]
[call site]
02902
cram_compress_block2
[function]
[call site]
02903
cram_compress_block2
[function]
[call site]
02904
cram_compress_block2
[function]
[call site]
02905
cram_compress_block2
[function]
[call site]
02906
cram_compress_block2
[function]
[call site]
02907
cram_compress_block2
[function]
[call site]
02908
cram_compress_block2
[function]
[call site]
02909
cram_compress_block2
[function]
[call site]
02910
cram_compress_block2
[function]
[call site]
02911
hts_realloc_p
[function]
[call site]
02912
cram_free_block
[function]
[call site]
02913
cram_encode_slice_header
[function]
[call site]
02914
cram_new_block
[function]
[call site]
02915
hts_malloc_pse
[function]
[call site]
02916
hts_add_sat2
[function]
[call site]
02917
hts_prod_sat2
[function]
[call site]
02918
hts_add_sat2
[function]
[call site]
02919
hts_malloc
[function]
[call site]
02920
cram_free_block
[function]
[call site]
02921
hts_log
[function]
[call site]
02922
cram_free_block
[function]
[call site]
02923
__assert_fail
[call site]
02924
cram_encode_compression_header
[function]
[call site]
02925
cram_new_block
[function]
[call site]
02926
cram_new_block
[function]
[call site]
02927
itf8_put_blk
[function]
[call site]
02928
itf8_put
[function]
[call site]
02929
block_append
[function]
[call site]
02930
itf8_put_blk
[function]
[call site]
02931
itf8_put_blk
[function]
[call site]
02932
itf8_put_blk
[function]
[call site]
02933
itf8_put_blk
[function]
[call site]
02934
itf8_put_blk
[function]
[call site]
02935
kh_destroy_map
[function]
[call site]
02936
kh_init_map
[function]
[call site]
02937
calloc
[call site]
02938
kh_put_map
[function]
[call site]
02939
kh_resize_map
[function]
[call site]
02940
realloc
[call site]
02941
__ac_FNV1a_hash_string
[function]
[call site]
02942
strcmp
[call site]
02943
kh_put_map
[function]
[call site]
02944
kh_put_map
[function]
[call site]
02945
kh_put_map
[function]
[call site]
02946
kh_put_map
[function]
[call site]
02947
kh_put_map
[function]
[call site]
02948
kh_put_map
[function]
[call site]
02949
kh_put_map
[function]
[call site]
02950
block_append
[function]
[call site]
02951
block_append_char
[function]
[call site]
02952
sub_idx
[function]
[call site]
02953
sub_idx
[function]
[call site]
02954
sub_idx
[function]
[call site]
02955
sub_idx
[function]
[call site]
02956
sub_idx
[function]
[call site]
02957
sub_idx
[function]
[call site]
02958
sub_idx
[function]
[call site]
02959
sub_idx
[function]
[call site]
02960
sub_idx
[function]
[call site]
02961
sub_idx
[function]
[call site]
02962
sub_idx
[function]
[call site]
02963
sub_idx
[function]
[call site]
02964
sub_idx
[function]
[call site]
02965
sub_idx
[function]
[call site]
02966
sub_idx
[function]
[call site]
02967
sub_idx
[function]
[call site]
02968
sub_idx
[function]
[call site]
02969
sub_idx
[function]
[call site]
02970
sub_idx
[function]
[call site]
02971
sub_idx
[function]
[call site]
02972
block_append
[function]
[call site]
02973
block_append
[function]
[call site]
02974
hts_log
[function]
[call site]
02975
block_append
[function]
[call site]
02976
block_append
[function]
[call site]
02977
block_append
[function]
[call site]
02978
hts_log
[function]
[call site]
02979
cram_free_block
[function]
[call site]
02980
hts_malloc_p
[function]
[call site]
02981
cram_ref_decr
[function]
[call site]
02982
cram_ref_decr
[function]
[call site]
02983
cram_flush_container2
[function]
[call site]
02984
htell
[function]
[call site]
02985
cram_write_container
[function]
[call site]
02986
itf8_put
[function]
[call site]
02987
crc32
[call site]
02988
hwrite
[function]
[call site]
02989
htell
[function]
[call site]
02990
cram_write_block
[function]
[call site]
02991
__assert_fail
[call site]
02992
hputc
[function]
[call site]
02993
hputc2
[function]
[call site]
02994
flush_buffer
[function]
[call site]
02995
hputc
[function]
[call site]
02996
hwrite
[function]
[call site]
02997
hwrite
[function]
[call site]
02998
hwrite
[function]
[call site]
02999
__assert_fail
[call site]
03000
crc32
[call site]
03001
crc32
[call site]
03002
crc32
[call site]
03003
int32_encode
[function]
[call site]
03004
hwrite
[function]
[call site]
03005
htell
[function]
[call site]
03006
cram_write_block
[function]
[call site]
03007
cram_write_block
[function]
[call site]
03008
htell
[function]
[call site]
03009
cram_index_slice
[function]
[call site]
03010
hts_log
[function]
[call site]
03011
cram_index_build_multiref
[function]
[call site]
03012
cram_decode_slice
[function]
[call site]
03013
cram_dependent_data_series
[function]
[call site]
03014
cram_uncompress_block
[function]
[call site]
03015
cram_uncompress_block
[function]
[call site]
03016
hts_calloc_ps
[function]
[call site]
03017
cram_codec_to_id
[function]
[call site]
03018
cram_codec_to_id
[function]
[call site]
03019
cram_codec_to_id
[function]
[call site]
03020
cram_uncompress_block
[function]
[call site]
03021
cram_codec_to_id
[function]
[call site]
03022
cram_uncompress_block
[function]
[call site]
03023
cram_codec_to_id
[function]
[call site]
03024
cram_codec_to_id
[function]
[call site]
03025
block_resize_exact
[function]
[call site]
03026
block_resize_exact
[function]
[call site]
03027
block_resize_exact
[function]
[call site]
03028
strcmp
[call site]
03029
hts_malloc_p
[function]
[call site]
03030
hts_log
[function]
[call site]
03031
cram_get_block_by_id
[function]
[call site]
03032
cram_uncompress_block
[function]
[call site]
03033
hts_log
[function]
[call site]
03034
cram_get_ref
[function]
[call site]
03035
hts_log
[function]
[call site]
03036
pthread_mutex_lock
[call site]
03037
pthread_mutex_lock
[call site]
03038
pthread_mutex_unlock
[call site]
03039
pthread_mutex_unlock
[call site]
03040
memcmp
[call site]
03041
hts_log
[function]
[call site]
03042
hts_log
[function]
[call site]
03043
hts_md5_init
[function]
[call site]
03044
hts_md5_update
[function]
[call site]
03045
hts_md5_final
[function]
[call site]
03046
hts_md5_destroy
[function]
[call site]
03047
cram_get_block_by_id
[function]
[call site]
03048
hts_md5_init
[function]
[call site]
03049
hts_md5_update
[function]
[call site]
03050
hts_md5_final
[function]
[call site]
03051
hts_md5_destroy
[function]
[call site]
03052
memcmp
[call site]
03053
sam_hdr_tid2name
[function]
[call site]
03054
hts_log
[function]
[call site]
03055
md5_print
[function]
[call site]
03056
hts_log
[function]
[call site]
03057
md5_print
[function]
[call site]
03058
hts_log
[function]
[call site]
03059
sam_hdr_find_tag_id
[function]
[call site]
03060
sam_hdr_fill_hrecs
[function]
[call site]
03061
sam_hrecs_find_type_id
[function]
[call site]
03062
sam_hrecs_find_key
[function]
[call site]
03063
kputsn
[function]
[call site]
03064
hts_log
[function]
[call site]
03065
hts_log
[function]
[call site]
03066
ks_free
[function]
[call site]
03067
ks_initialize
[function]
[call site]
03068
pthread_mutex_lock
[call site]
03069
pthread_mutex_lock
[call site]
03070
calloc
[call site]
03071
pthread_mutex_unlock
[call site]
03072
pthread_mutex_unlock
[call site]
03073
hts_log
[function]
[call site]
03074
pthread_mutex_lock
[call site]
03075
pthread_mutex_unlock
[call site]
03076
cram_get_ref
[function]
[call site]
03077
pthread_mutex_lock
[call site]
03078
pthread_mutex_unlock
[call site]
03079
pthread_mutex_lock
[call site]
03080
pthread_mutex_unlock
[call site]
03081
cram_ref_decr
[function]
[call site]
03082
pthread_mutex_lock
[call site]
03083
pthread_mutex_lock
[call site]
03084
pthread_mutex_unlock
[call site]
03085
pthread_mutex_unlock
[call site]
03086
hts_log
[function]
[call site]
03087
hts_log
[function]
[call site]
03088
pthread_mutex_lock
[call site]
03089
pthread_mutex_unlock
[call site]
03090
hts_log
[function]
[call site]
03091
cram_decode_tlen
[function]
[call site]
03092
cram_decode_tlen
[function]
[call site]
03093
cram_decode_tlen
[function]
[call site]
03094
cram_decode_aux_1_0
[function]
[call site]
03095
map_find
[function]
[call site]
03096
block_append
[function]
[call site]
03097
cram_decode_aux
[function]
[call site]
03098
strlen
[call site]
03099
map_find
[function]
[call site]
03100
block_append
[function]
[call site]
03101
aux_ele_size
[function]
[call site]
03102
hts_log
[function]
[call site]
03103
block_resize
[function]
[call site]
03104
block_resize
[function]
[call site]
03105
hts_log
[function]
[call site]
03106
cram_decode_seq
[function]
[call site]
03107
block_append
[function]
[call site]
03108
hts_realloc_p
[function]
[call site]
03109
hts_log
[function]
[call site]
03110
memchr
[call site]
03111
add_md_char
[function]
[call site]
03112
block_append_uint
[function]
[call site]
03113
block_grow
[function]
[call site]
03114
append_uint32
[function]
[call site]
03115
block_append_char
[function]
[call site]
03116
block_append_uint
[function]
[call site]
03117
add_md_char
[function]
[call site]
03118
block_append_uint
[function]
[call site]
03119
block_append_char
[function]
[call site]
03120
block_append
[function]
[call site]
03121
block_append_char
[function]
[call site]
03122
block_append
[function]
[call site]
03123
block_append_uint
[function]
[call site]
03124
block_append_uint
[function]
[call site]
03125
block_append_uint
[function]
[call site]
03126
block_append_char
[function]
[call site]
03127
block_append_uint
[function]
[call site]
03128
block_append_char
[function]
[call site]
03129
hts_log
[function]
[call site]
03130
hts_log
[function]
[call site]
03131
memchr
[call site]
03132
add_md_char
[function]
[call site]
03133
hts_realloc_p
[function]
[call site]
03134
block_append_uint
[function]
[call site]
03135
hts_realloc_p
[function]
[call site]
03136
block_append_char
[function]
[call site]
03137
block_append
[function]
[call site]
03138
hts_log
[function]
[call site]
03139
pthread_mutex_lock
[call site]
03140
cram_ref_decr
[function]
[call site]
03141
cram_ref_decr
[function]
[call site]
03142
pthread_mutex_unlock
[call site]
03143
cram_decode_slice_xref
[function]
[call site]
03144
hts_log
[function]
[call site]
03145
cram_free_block
[function]
[call site]
03146
block_resize_exact
[function]
[call site]
03147
block_resize_exact
[function]
[call site]
03148
block_resize_exact
[function]
[call site]
03149
block_resize_exact
[function]
[call site]
03150
bulk_cram_to_bam
[function]
[call site]
03151
pthread_mutex_lock
[call site]
03152
pthread_mutex_unlock
[call site]
03153
hts_realloc_p
[function]
[call site]
03154
bam_set_mempolicy
[function]
[call site]
03155
calloc
[call site]
03156
calloc
[call site]
03157
bam_set_mempolicy
[function]
[call site]
03158
cram_to_bam
[function]
[call site]
03159
strlen
[call site]
03160
append_uint64
[function]
[call site]
03161
append_uint32
[function]
[call site]
03162
append_uint32
[function]
[call site]
03163
append_sub32
[function]
[call site]
03164
append_uint32
[function]
[call site]
03165
append_sub32
[function]
[call site]
03166
append_uint64
[function]
[call site]
03167
bam_set1
[function]
[call site]
03168
bam_cigar2rqlens
[function]
[call site]
03169
hts_log
[function]
[call site]
03170
__errno_location
[call site]
03171
hts_log
[function]
[call site]
03172
__errno_location
[call site]
03173
hts_log
[function]
[call site]
03174
__errno_location
[call site]
03175
hts_log
[function]
[call site]
03176
__errno_location
[call site]
03177
subtract_check_underflow
[function]
[call site]
03178
subtract_check_underflow
[function]
[call site]
03179
subtract_check_underflow
[function]
[call site]
03180
subtract_check_underflow
[function]
[call site]
03181
subtract_check_underflow
[function]
[call site]
03182
hts_log
[function]
[call site]
03183
__errno_location
[call site]
03184
hts_add_sat2
[function]
[call site]
03185
realloc_bam_data
[function]
[call site]
03186
sam_realloc_bam_data
[function]
[call site]
03187
__errno_location
[call site]
03188
__errno_location
[call site]
03189
bam_get_mempolicy
[function]
[call site]
03190
realloc
[call site]
03191
bam_get_mempolicy
[function]
[call site]
03192
bam_set_mempolicy
[function]
[call site]
03193
hts_reg2bin
[function]
[call site]
03194
strncpy
[call site]
03195
bam_tag2cigar
[function]
[call site]
03196
bam_aux_get
[function]
[call site]
03197
__errno_location
[call site]
03198
__errno_location
[call site]
03199
__errno_location
[call site]
03200
le_to_u32
[function]
[call site]
03201
possibly_expand_bam_data
[function]
[call site]
03202
__errno_location
[call site]
03203
sam_realloc_bam_data
[function]
[call site]
03204
bam_endpos
[function]
[call site]
03205
bam_cigar2rlen
[function]
[call site]
03206
hts_reg2bin
[function]
[call site]
03207
hts_log
[function]
[call site]
03208
pthread_mutex_lock
[call site]
03209
cram_ref_decr
[function]
[call site]
03210
pthread_mutex_unlock
[call site]
03211
snprintf
[call site]
03212
strlen
[call site]
03213
bgzf_write
[function]
[call site]
03214
hwrite
[function]
[call site]
03215
__assert_fail
[call site]
03216
lazy_flush
[function]
[call site]
03217
mt_queue
[function]
[call site]
03218
bgzf_flush
[function]
[call site]
03219
snprintf
[call site]
03220
strlen
[call site]
03221
bgzf_write
[function]
[call site]
03222
snprintf
[call site]
03223
strlen
[call site]
03224
bgzf_write
[function]
[call site]
03225
__errno_location
[call site]
03226
hts_tpool_dispatch2
[function]
[call site]
03227
hts_tpool_dispatch3
[function]
[call site]
03228
cram_flush_thread
[function]
[call site]
03229
cram_encode_container
[function]
[call site]
03230
hts_log
[function]
[call site]
03231
__errno_location
[call site]
03232
cram_flush_result
[function]
[call site]
03233
hts_tpool_next_result
[function]
[call site]
03234
pthread_mutex_lock
[call site]
03235
hts_tpool_next_result_locked
[function]
[call site]
03236
pthread_mutex_unlock
[call site]
03237
hts_tpool_result_data
[function]
[call site]
03238
hts_tpool_delete_result
[function]
[call site]
03239
cram_flush_container2
[function]
[call site]
03240
cram_free_slice
[function]
[call site]
03241
cram_free_slice
[function]
[call site]
03242
cram_free_container
[function]
[call site]
03243
hts_tpool_delete_result
[function]
[call site]
03244
cram_free_container
[function]
[call site]
03245
hts_usleep
[function]
[call site]
03246
cram_drain_rqueue
[function]
[call site]
03247
hts_tpool_process_flush
[function]
[call site]
03248
cram_flush_result
[function]
[call site]
03249
hts_tpool_process_destroy
[function]
[call site]
03250
pthread_mutex_destroy
[call site]
03251
pthread_mutex_destroy
[call site]
03252
pthread_mutex_destroy
[call site]
03253
pthread_mutex_destroy
[call site]
03254
cram_write_eof_block
[function]
[call site]
03255
cram_encode_compression_header
[function]
[call site]
03256
cram_write_container
[function]
[call site]
03257
cram_write_block
[function]
[call site]
03258
cram_close
[function]
[call site]
03259
free_bam_list
[function]
[call site]
03260
hclose
[function]
[call site]
03261
cram_free_file_def
[function]
[call site]
03262
sam_hdr_destroy
[function]
[call site]
03263
cram_free_container
[function]
[call site]
03264
cram_free_container
[function]
[call site]
03265
refs_free
[function]
[call site]
03266
kh_destroy_m_metrics
[function]
[call site]
03267
cram_index_free
[function]
[call site]
03268
cram_index_free_recurse
[function]
[call site]
03269
cram_index_free_recurse
[function]
[call site]
03270
hts_tpool_destroy
[function]
[call site]
03271
bgzf_close
[function]
[call site]
03272
cram_free_block
[function]
[call site]
03273
kh_destroy_map
[function]
[call site]
03274
cram_free_block
[function]
[call site]
03275
sam_state_destroy
[function]
[call site]
03276
fastq_state_destroy
[function]
[call site]
03277
kh_destroy_tag
[function]
[call site]
03278
ks_free
[function]
[call site]
03279
ks_initialize
[function]
[call site]
03280
ks_free
[function]
[call site]
03281
ks_free
[function]
[call site]
03282
regfree
[call site]
03283
bgzf_close
[function]
[call site]
03284
hclose
[function]
[call site]
03285
hts_idx_close_otf_fp
[function]
[call site]
03286
need_idx_ugly_delay_hack
[function]
[call site]
03287
idx_write_uint64
[function]
[call site]
03288
ed_is_big
[function]
[call site]
03289
ed_swap_8
[function]
[call site]
03290
bgzf_write
[function]
[call site]
03291
bgzf_close
[function]
[call site]
03292
__errno_location
[call site]
03293
sam_hdr_destroy
[function]
[call site]
03294
hts_idx_destroy
[function]
[call site]
03295
cram_index_free
[function]
[call site]
03296
kh_destroy_bin
[function]
[call site]
03297
hts_filter_free
[function]
[call site]
03298
__errno_location
[call site]
03299
view_sam
[function]
[call site]
03300
abort
[call site]
03301
hopen
[function]
[call site]
03302
hts_hopen
[function]
[call site]
03303
hclose
[function]
[call site]
03304
abort
[call site]
03305
hts_open
[function]
[call site]
03306
hts_open_format
[function]
[call site]
03307
strncpy
[call site]
03308
strchr
[call site]
03309
strchr
[call site]
03310
strchr
[call site]
03311
strstr
[call site]
03312
strdup
[call site]
03313
hopen
[function]
[call site]
03314
hts_hopen
[function]
[call site]
03315
hts_opt_apply
[function]
[call site]
03316
__errno_location
[call site]
03317
__errno_location
[call site]
03318
__errno_location
[call site]
03319
__errno_location
[call site]
03320
strerror
[call site]
03321
hts_log
[function]
[call site]
03322
hclose_abruptly
[function]
[call site]
03323
abort
[call site]
03324
sam_hdr_read
[function]
[call site]
03325
__errno_location
[call site]
03326
bam_hdr_read
[function]
[call site]
03327
bgzf_check_EOF
[function]
[call site]
03328
pthread_mutex_lock
[call site]
03329
pthread_cond_signal
[call site]
03330
hts_tpool_wake_dispatch
[function]
[call site]
03331
pthread_mutex_unlock
[call site]
03332
pthread_cond_wait
[call site]
03333
pthread_cond_signal
[call site]
03334
abort
[call site]
03335
pthread_mutex_unlock
[call site]
03336
bgzf_check_EOF_common
[function]
[call site]
03337
htell
[function]
[call site]
03338
hseek
[function]
[call site]
03339
__errno_location
[call site]
03340
hclearerr
[function]
[call site]
03341
__errno_location
[call site]
03342
hclearerr
[function]
[call site]
03343
hread
[function]
[call site]
03344
hseek
[function]
[call site]
03345
memcmp
[call site]
03346
perror
[call site]
03347
hts_log
[function]
[call site]
03348
bgzf_read
[function]
[call site]
03349
memcmp
[call site]
03350
hts_log
[function]
[call site]
03351
sam_hdr_init
[function]
[call site]
03352
bgzf_read
[function]
[call site]
03353
le_to_u32
[function]
[call site]
03354
bgzf_read
[function]
[call site]
03355
bgzf_read
[function]
[call site]
03356
ed_swap_4p
[function]
[call site]
03357
ed_swap_4
[function]
[call site]
03358
calloc
[call site]
03359
calloc
[call site]
03360
bgzf_read
[function]
[call site]
03361
ed_swap_4p
[function]
[call site]
03362
bgzf_read
[function]
[call site]
03363
realloc
[call site]
03364
bgzf_read
[function]
[call site]
03365
ed_swap_4p
[function]
[call site]
03366
hts_log
[function]
[call site]
03367
hts_log
[function]
[call site]
03368
sam_hdr_destroy
[function]
[call site]
03369
sam_hdr_sanitise
[function]
[call site]
03370
sam_hdr_destroy
[function]
[call site]
03371
hts_log
[function]
[call site]
03372
hts_log
[function]
[call site]
03373
hts_log
[function]
[call site]
03374
sam_hdr_destroy
[function]
[call site]
03375
realloc
[call site]
03376
sam_hdr_destroy
[function]
[call site]
03377
sam_hdr_dup
[function]
[call site]
03378
sam_hdr_init
[function]
[call site]
03379
calloc
[call site]
03380
calloc
[call site]
03381
strdup
[call site]
03382
sam_hdr_dup_sdict
[function]
[call site]
03383
kh_init_s2i
[function]
[call site]
03384
kh_get_s2i
[function]
[call site]
03385
kh_put_s2i
[function]
[call site]
03386
kh_destroy_s2i
[function]
[call site]
03387
sam_hrecs_rebuild_text
[function]
[call site]
03388
kputsn
[function]
[call site]
03389
sam_hrecs_rebuild_lines
[function]
[call site]
03390
kputsn
[function]
[call site]
03391
build_header_line
[function]
[call site]
03392
kputc_
[function]
[call site]
03393
kputsn
[function]
[call site]
03394
kputc_
[function]
[call site]
03395
kputsn
[function]
[call site]
03396
kputc
[function]
[call site]
03397
ks_release
[function]
[call site]
03398
ks_release
[function]
[call site]
03399
sam_hdr_update_target_arrays
[function]
[call site]
03400
hts_malloc_ps
[function]
[call site]
03401
sam_hdr_destroy
[function]
[call site]
03402
sam_hdr_sanitise
[function]
[call site]
03403
sam_hdr_create
[function]
[call site]
03404
sam_hdr_init
[function]
[call site]
03405
sam_hdr_build_from_sam_file
[function]
[call site]
03406
sam_hrecs_new
[function]
[call site]
03407
hts_getline
[function]
[call site]
03408
hts_log
[function]
[call site]
03409
abort
[call site]
03410
kgetline2
[function]
[call site]
03411
ks_resize
[function]
[call site]
03412
hgetln_wrapper
[function]
[call site]
03413
hgetln
[function]
[call site]
03414
herrno
[function]
[call site]
03415
__errno_location
[call site]
03416
bgzf_getline
[function]
[call site]
03417
bgzf_read_block
[function]
[call site]
03418
memchr
[call site]
03419
ks_expand
[function]
[call site]
03420
bgzf_htell
[function]
[call site]
03421
abort
[call site]
03422
isalpha_c
[function]
[call site]
03423
sam_hrecs_error
[function]
[call site]
03424
strncmp
[call site]
03425
kputc
[function]
[call site]
03426
valid_sam_header_type
[function]
[call site]
03427
hts_log
[function]
[call site]
03428
warn_if_known_stderr
[function]
[call site]
03429
sam_hrecs_parse_single_line
[function]
[call site]
03430
TYPEKEY
[function]
[call site]
03431
kputsn
[function]
[call site]
03432
kputc
[function]
[call site]
03433
bgzf_peek
[function]
[call site]
03434
bgzf_read_block
[function]
[call site]
03435
hts_log
[function]
[call site]
03436
hpeek
[function]
[call site]
03437
strstr
[call site]
03438
hopen
[function]
[call site]
03439
khgetline
[function]
[call site]
03440
kgetline
[function]
[call site]
03441
ks_resize
[function]
[call site]
03442
strlen
[call site]
03443
hgets_wrapper
[function]
[call site]
03444
hgets
[function]
[call site]
03445
strchr
[call site]
03446
strtoll
[call site]
03447
kputs
[function]
[call site]
03448
kputsn
[function]
[call site]
03449
kputs
[function]
[call site]
03450
kputll
[function]
[call site]
03451
kputc
[function]
[call site]
03452
sam_hrecs_parse_single_line
[function]
[call site]
03453
ks_free
[function]
[call site]
03454
hclose
[function]
[call site]
03455
hts_log
[function]
[call site]
03456
kh_grow_to_fit_m_s2i
[function]
[call site]
03457
hts_realloc_p
[function]
[call site]
03458
sam_hrecs_update_hashes
[function]
[call site]
03459
kputsn
[function]
[call site]
03460
ks_release
[function]
[call site]
03461
sam_hdr_update_target_arrays
[function]
[call site]
03462
ks_free
[function]
[call site]
03463
sam_hdr_destroy
[function]
[call site]
03464
sam_hdr_destroy
[function]
[call site]
03465
sam_hdr_sanitise
[function]
[call site]
03466
sam_hdr_init
[function]
[call site]
03467
__errno_location
[call site]
03468
__errno_location
[call site]
03469
sam_hdr_incr_ref
[function]
[call site]
03470
hts_close_or_abort
[function]
[call site]
03471
hts_close
[function]
[call site]
03472
abort
[call site]
03473
hts_close
[function]
[call site]
03474
hts_close
[function]
[call site]
03475
sam_hdr_count_lines
[function]
[call site]
03476
sam_hdr_fill_hrecs
[function]
[call site]
03477
sam_hrecs_find_type_id
[function]
[call site]
03478
sam_hdr_write
[function]
[call site]
03479
__errno_location
[call site]
03480
bam_hdr_write
[function]
[call site]
03481
sam_hrecs_rebuild_text
[function]
[call site]
03482
hts_log
[function]
[call site]
03483
hts_log
[function]
[call site]
03484
hts_log
[function]
[call site]
03485
hts_log
[function]
[call site]
03486
hts_log
[function]
[call site]
03487
hts_log
[function]
[call site]
03488
bgzf_write
[function]
[call site]
03489
ed_swap_4
[function]
[call site]
03490
bgzf_write
[function]
[call site]
03491
bgzf_write
[function]
[call site]
03492
ed_swap_4
[function]
[call site]
03493
bgzf_write
[function]
[call site]
03494
bgzf_write
[function]
[call site]
03495
bgzf_write
[function]
[call site]
03496
bgzf_write
[function]
[call site]
03497
strlen
[call site]
03498
ed_swap_4
[function]
[call site]
03499
bgzf_write
[function]
[call site]
03500
bgzf_write
[function]
[call site]
03501
bgzf_write
[function]
[call site]
03502
ed_swap_4
[function]
[call site]
03503
bgzf_write
[function]
[call site]
03504
bgzf_write
[function]
[call site]
03505
bgzf_flush
[function]
[call site]
03506
cram_set_header2
[function]
[call site]
03507
sam_hdr_destroy
[function]
[call site]
03508
sam_hdr_dup
[function]
[call site]
03509
refs_from_header
[function]
[call site]
03510
cram_load_reference
[function]
[call site]
03511
cram_write_SAM_hdr
[function]
[call site]
03512
cram_write_file_def
[function]
[call site]
03513
hwrite
[function]
[call site]
03514
sam_hrecs_find_rg
[function]
[call site]
03515
sam_hdr_add_line
[function]
[call site]
03516
sam_hdr_fill_hrecs
[function]
[call site]
03517
sam_hrecs_vadd
[function]
[call site]
03518
rebuild_target_arrays
[function]
[call site]
03519
redact_header_text
[function]
[call site]
03520
refs_from_header
[function]
[call site]
03521
refs2id
[function]
[call site]
03522
sam_hrecs_find_type_id
[function]
[call site]
03523
sam_hrecs_find_key
[function]
[call site]
03524
cram_get_ref
[function]
[call site]
03525
hts_log
[function]
[call site]
03526
hts_log
[function]
[call site]
03527
hts_log
[function]
[call site]
03528
pthread_mutex_lock
[call site]
03529
pthread_mutex_unlock
[call site]
03530
hts_md5_init
[function]
[call site]
03531
hts_md5_update
[function]
[call site]
03532
hts_md5_final
[function]
[call site]
03533
hts_md5_destroy
[function]
[call site]
03534
cram_ref_decr
[function]
[call site]
03535
hts_md5_hex
[function]
[call site]
03536
sam_hdr_update_line
[function]
[call site]
03537
sam_hdr_fill_hrecs
[function]
[call site]
03538
sam_hrecs_find_type_id
[function]
[call site]
03539
check_for_name_update
[function]
[call site]
03540
TYPEKEY
[function]
[call site]
03541
TYPEKEY
[function]
[call site]
03542
TYPEKEY
[function]
[call site]
03543
sam_hrecs_find_key
[function]
[call site]
03544
__assert_fail
[call site]
03545
strcmp
[call site]
03546
strcmp
[call site]
03547
kh_get_m_s2i
[function]
[call site]
03548
hts_log
[function]
[call site]
03549
TYPEKEY
[function]
[call site]
03550
hts_log
[function]
[call site]
03551
sam_hrecs_vupdate
[function]
[call site]
03552
kh_get_m_s2i
[function]
[call site]
03553
sam_hrecs_find_key
[function]
[call site]
03554
__assert_fail
[call site]
03555
__assert_fail
[call site]
03556
__assert_fail
[call site]
03557
kh_del_m_s2i
[function]
[call site]
03558
kh_put_m_s2i
[function]
[call site]
03559
hts_log
[function]
[call site]
03560
TYPEKEY
[function]
[call site]
03561
sam_hrecs_update_hashes
[function]
[call site]
03562
rebuild_target_arrays
[function]
[call site]
03563
redact_header_text
[function]
[call site]
03564
full_path
[function]
[call site]
03565
strlen
[call site]
03566
hisremote
[function]
[call site]
03567
hts_log
[function]
[call site]
03568
strncpy
[call site]
03569
toupper_c
[function]
[call site]
03570
strncpy
[call site]
03571
getcwd
[call site]
03572
strlen
[call site]
03573
strncpy
[call site]
03574
snprintf
[call site]
03575
sam_hdr_update_line
[function]
[call site]
03576
sam_hdr_length
[function]
[call site]
03577
sam_hdr_rebuild
[function]
[call site]
03578
rebuild_target_arrays
[function]
[call site]
03579
hts_log
[function]
[call site]
03580
sam_hdr_link_pg
[function]
[call site]
03581
sam_hdr_fill_hrecs
[function]
[call site]
03582
hts_realloc_p
[function]
[call site]
03583
calloc
[call site]
03584
__assert_fail
[call site]
03585
kh_get_m_s2i
[function]
[call site]
03586
hts_log
[function]
[call site]
03587
hts_log
[function]
[call site]
03588
redact_header_text
[function]
[call site]
03589
hts_log
[function]
[call site]
03590
sam_hrecs_rebuild_text
[function]
[call site]
03591
ks_free
[function]
[call site]
03592
ks_len
[function]
[call site]
03593
ks_release
[function]
[call site]
03594
hts_log
[function]
[call site]
03595
int32_encode
[function]
[call site]
03596
sam_hdr_str
[function]
[call site]
03597
sam_hdr_rebuild
[function]
[call site]
03598
hwrite
[function]
[call site]
03599
cram_new_block
[function]
[call site]
03600
cram_new_container
[function]
[call site]
03601
calloc
[call site]
03602
calloc
[call site]
03603
cram_new_compression_header
[function]
[call site]
03604
calloc
[call site]
03605
cram_new_block
[function]
[call site]
03606
kh_init_m_s2i
[function]
[call site]
03607
cram_free_block
[function]
[call site]
03608
string_pool_create
[function]
[call site]
03609
kh_destroy_m_s2i
[function]
[call site]
03610
cram_free_block
[function]
[call site]
03611
cram_stats_create
[function]
[call site]
03612
calloc
[call site]
03613
kh_init_m_tagmap
[function]
[call site]
03614
calloc
[call site]
03615
cram_free_block
[function]
[call site]
03616
cram_free_container
[function]
[call site]
03617
int32_put_blk
[function]
[call site]
03618
block_append
[function]
[call site]
03619
sam_hdr_str
[function]
[call site]
03620
block_append
[function]
[call site]
03621
cram_compress_block
[function]
[call site]
03622
cram_compress_block2
[function]
[call site]
03623
cram_free_block
[function]
[call site]
03624
cram_free_container
[function]
[call site]
03625
calloc
[call site]
03626
cram_free_block
[function]
[call site]
03627
cram_free_container
[function]
[call site]
03628
block_append
[function]
[call site]
03629
cram_write_container
[function]
[call site]
03630
cram_free_block
[function]
[call site]
03631
cram_free_container
[function]
[call site]
03632
cram_write_block
[function]
[call site]
03633
cram_free_block
[function]
[call site]
03634
cram_free_container
[function]
[call site]
03635
block_resize
[function]
[call site]
03636
cram_write_block
[function]
[call site]
03637
cram_free_block
[function]
[call site]
03638
cram_free_container
[function]
[call site]
03639
cram_free_block
[function]
[call site]
03640
cram_free_container
[function]
[call site]
03641
hflush
[function]
[call site]
03642
sam_hrecs_rebuild_text
[function]
[call site]
03643
strstr
[call site]
03644
bgzf_write
[function]
[call site]
03645
hwrite
[function]
[call site]
03646
kputsn
[function]
[call site]
03647
kputs
[function]
[call site]
03648
kputsn
[function]
[call site]
03649
kputw
[function]
[call site]
03650
kputc
[function]
[call site]
03651
bgzf_write
[function]
[call site]
03652
hwrite
[function]
[call site]
03653
bgzf_flush
[function]
[call site]
03654
hflush
[function]
[call site]
03655
sam_hdr_dup
[function]
[call site]
03656
sam_hdr_destroy
[function]
[call site]
03657
bam_init1
[function]
[call site]
03658
calloc
[call site]
03659
sam_read1
[function]
[call site]
03660
sam_read1_bam
[function]
[call site]
03661
bam_read1
[function]
[call site]
03662
bgzf_read_small
[function]
[call site]
03663
bgzf_read
[function]
[call site]
03664
ed_swap_4p
[function]
[call site]
03665
bgzf_read
[function]
[call site]
03666
le_to_i32
[function]
[call site]
03667
le_to_u32
[function]
[call site]
03668
le_to_u32
[function]
[call site]
03669
le_to_u32
[function]
[call site]
03670
le_to_u32
[function]
[call site]
03671
le_to_i32
[function]
[call site]
03672
le_to_i32
[function]
[call site]
03673
realloc_bam_data
[function]
[call site]
03674
bgzf_read_small
[function]
[call site]
03675
fixup_missing_qname_nul
[function]
[call site]
03676
realloc_bam_data
[function]
[call site]
03677
bgzf_read_small
[function]
[call site]
03678
swap_data
[function]
[call site]
03679
ed_swap_4p
[function]
[call site]
03680
bam_tag2cigar
[function]
[call site]
03681
bam_cigar2rqlens
[function]
[call site]
03682
hts_reg2bin
[function]
[call site]
03683
hts_log
[function]
[call site]
03684
__errno_location
[call site]
03685
sam_read1_cram
[function]
[call site]
03686
cram_get_bam_seq
[function]
[call site]
03687
cram_get_seq
[function]
[call site]
03688
pthread_mutex_lock
[call site]
03689
pthread_mutex_unlock
[call site]
03690
cram_next_slice
[function]
[call site]
03691
cram_first_slice
[function]
[call site]
03692
cram_free_container
[function]
[call site]
03693
cram_read_container
[function]
[call site]
03694
cram_seek
[function]
[call site]
03695
cram_free_container
[function]
[call site]
03696
cram_read_container
[function]
[call site]
03697
cram_read_block
[function]
[call site]
03698
cram_decode_compression_header
[function]
[call site]
03699
calloc
[call site]
03700
cram_uncompress_block
[function]
[call site]
03701
hts_malloc_p
[function]
[call site]
03702
kh_init_map
[function]
[call site]
03703
cram_free_compression_header
[function]
[call site]
03704
cram_free_compression_header
[function]
[call site]
03705
kh_put_map
[function]
[call site]
03706
cram_free_compression_header
[function]
[call site]
03707
kh_put_map
[function]
[call site]
03708
cram_free_compression_header
[function]
[call site]
03709
kh_put_map
[function]
[call site]
03710
cram_free_compression_header
[function]
[call site]
03711
kh_put_map
[function]
[call site]
03712
cram_free_compression_header
[function]
[call site]
03713
cram_free_compression_header
[function]
[call site]
03714
kh_put_map
[function]
[call site]
03715
cram_free_compression_header
[function]
[call site]
03716
cram_decode_TD
[function]
[call site]
03717
cram_new_block
[function]
[call site]
03718
hts_log
[function]
[call site]
03719
cram_free_block
[function]
[call site]
03720
cram_free_block
[function]
[call site]
03721
cram_free_block
[function]
[call site]
03722
block_append
[function]
[call site]
03723
block_append_char
[function]
[call site]
03724
calloc
[call site]
03725
cram_free_block
[function]
[call site]
03726
cram_free_block
[function]
[call site]
03727
cram_free_compression_header
[function]
[call site]
03728
kh_put_map
[function]
[call site]
03729
cram_free_compression_header
[function]
[call site]
03730
hts_log
[function]
[call site]
03731
cram_free_compression_header
[function]
[call site]
03732
cram_free_compression_header
[function]
[call site]
03733
cram_free_compression_header
[function]
[call site]
03734
hts_log
[function]
[call site]
03735
hts_log
[function]
[call site]
03736
cram_decoder_init
[function]
[call site]
03737
cram_encoding2str
[function]
[call site]
03738
hts_log
[function]
[call site]
03739
cram_free_compression_header
[function]
[call site]
03740
cram_free_compression_header
[function]
[call site]
03741
cram_free_compression_header
[function]
[call site]
03742
cram_free_compression_header
[function]
[call site]
03743
cram_decoder_init
[function]
[call site]
03744
cram_free_compression_header
[function]
[call site]
03745
cram_free_compression_header
[function]
[call site]
03746
sam_hrecs_sort_order
[function]
[call site]
03747
TYPEKEY
[function]
[call site]
03748
kh_get_sam_hrecs_t
[function]
[call site]
03749
strcmp
[call site]
03750
strcmp
[call site]
03751
strcmp
[call site]
03752
strcmp
[call site]
03753
hts_log
[function]
[call site]
03754
pthread_mutex_lock
[call site]
03755
pthread_mutex_unlock
[call site]
03756
cram_free_slice
[function]
[call site]
03757
cram_free_container
[function]
[call site]
03758
cram_read_container
[function]
[call site]
03759
cram_free_container
[function]
[call site]
03760
cram_free_container
[function]
[call site]
03761
cram_free_container
[function]
[call site]
03762
cram_free_container
[function]
[call site]
03763
hseek
[function]
[call site]
03764
cram_read_block
[function]
[call site]
03765
cram_decode_compression_header
[function]
[call site]
03766
sam_hrecs_sort_order
[function]
[call site]
03767
pthread_mutex_lock
[call site]
03768
pthread_mutex_unlock
[call site]
03769
cram_free_container
[function]
[call site]
03770
cram_read_slice
[function]
[call site]
03771
cram_read_block
[function]
[call site]
03772
calloc
[call site]
03773
cram_decode_slice_header
[function]
[call site]
03774
cram_uncompress_block
[function]
[call site]
03775
calloc
[call site]
03776
hts_malloc_p
[function]
[call site]
03777
cram_content_type2str
[function]
[call site]
03778
hts_log
[function]
[call site]
03779
hts_log
[function]
[call site]
03780
calloc
[call site]
03781
cram_read_block
[function]
[call site]
03782
calloc
[call site]
03783
hts_malloc_p
[function]
[call site]
03784
cram_new_block
[function]
[call site]
03785
cram_new_block
[function]
[call site]
03786
cram_new_block
[function]
[call site]
03787
cram_new_block
[function]
[call site]
03788
cram_new_block
[function]
[call site]
03789
cram_new_block
[function]
[call site]
03790
cram_free_block
[function]
[call site]
03791
cram_free_slice
[function]
[call site]
03792
cram_free_slice
[function]
[call site]
03793
cram_free_slice
[function]
[call site]
03794
cram_free_slice
[function]
[call site]
03795
cram_decode_slice_mt
[function]
[call site]
03796
cram_decode_slice
[function]
[call site]
03797
hts_tpool_process_sz
[function]
[call site]
03798
pthread_mutex_lock
[call site]
03799
pthread_mutex_unlock
[call site]
03800
__errno_location
[call site]
03801
__errno_location
[call site]
03802
hts_tpool_dispatch2
[function]
[call site]
03803
cram_decode_slice_thread
[function]
[call site]
03804
cram_decode_slice
[function]
[call site]
03805
__errno_location
[call site]
03806
__errno_location
[call site]
03807
hts_log
[function]
[call site]
03808
cram_free_slice
[function]
[call site]
03809
hts_tpool_process_len
[function]
[call site]
03810
pthread_mutex_lock
[call site]
03811
pthread_mutex_unlock
[call site]
03812
hts_tpool_process_qsize
[function]
[call site]
03813
hts_tpool_process_empty
[function]
[call site]
03814
hts_tpool_next_result_wait
[function]
[call site]
03815
hts_tpool_result_data
[function]
[call site]
03816
hts_log
[function]
[call site]
03817
hts_tpool_result_data
[function]
[call site]
03818
hts_log
[function]
[call site]
03819
hts_tpool_delete_result
[function]
[call site]
03820
hts_tpool_delete_result
[function]
[call site]
03821
cram_free_slice
[function]
[call site]
03822
cram_free_slice
[function]
[call site]
03823
bam_get_mempolicy
[function]
[call site]
03824
bam_copy1
[function]
[call site]
03825
realloc_bam_data
[function]
[call site]
03826
bam_set_mempolicy
[function]
[call site]
03827
cram_to_bam
[function]
[call site]
03828
cram_eof
[function]
[call site]
03829
sam_read1_sam
[function]
[call site]
03830
sam_parse1
[function]
[call site]
03831
strchr
[call site]
03832
hts_log
[function]
[call site]
03833
hts_log
[function]
[call site]
03834
possibly_expand_bam_data
[function]
[call site]
03835
parse_sam_flag
[function]
[call site]
03836
hts_str2uint
[function]
[call site]
03837
strtoul
[call site]
03838
strchr
[call site]
03839
strcmp
[call site]
03840
hts_log
[function]
[call site]
03841
bam_name2id
[function]
[call site]
03842
sam_hdr_name2tid
[function]
[call site]
03843
sam_hdr_fill_hrecs
[function]
[call site]
03844
kh_get_m_s2i
[function]
[call site]
03845
hts_log
[function]
[call site]
03846
hts_strprint
[function]
[call site]
03847
isprint_c
[function]
[call site]
03848
__ctype_b_loc
[call site]
03849
strcpy
[call site]
03850
snprintf
[call site]
03851
hts_log
[function]
[call site]
03852
hts_str2uint
[function]
[call site]
03853
hts_log
[function]
[call site]
03854
hts_str2uint
[function]
[call site]
03855
bam_parse_cigar
[function]
[call site]
03856
hts_log
[function]
[call site]
03857
read_ncigar
[function]
[call site]
03858
isdigit_c
[function]
[call site]
03859
hts_log
[function]
[call site]
03860
hts_log
[function]
[call site]
03861
possibly_expand_bam_data
[function]
[call site]
03862
hts_log
[function]
[call site]
03863
parse_cigar
[function]
[call site]
03864
hts_str2uint
[function]
[call site]
03865
hts_log
[function]
[call site]
03866
hts_log
[function]
[call site]
03867
hts_log
[function]
[call site]
03868
bam_cigar2rlen
[function]
[call site]
03869
strchr
[call site]
03870
hts_log
[function]
[call site]
03871
hts_reg2bin
[function]
[call site]
03872
strchr
[call site]
03873
strcmp
[call site]
03874
strcmp
[call site]
03875
bam_name2id
[function]
[call site]
03876
hts_log
[function]
[call site]
03877
hts_strprint
[function]
[call site]
03878
hts_log
[function]
[call site]
03879
hts_str2uint
[function]
[call site]
03880
hts_log
[function]
[call site]
03881
hts_str2int
[function]
[call site]
03882
hts_log
[function]
[call site]
03883
strchr
[call site]
03884
strcmp
[call site]
03885
hts_log
[function]
[call site]
03886
bam_cigar2qlen
[function]
[call site]
03887
hts_log
[function]
[call site]
03888
possibly_expand_bam_data
[function]
[call site]
03889
possibly_expand_bam_data
[function]
[call site]
03890
hts_log
[function]
[call site]
03891
hts_log
[function]
[call site]
03892
aux_parse
[function]
[call site]
03893
hts_log
[function]
[call site]
03894
isspace_c
[function]
[call site]
03895
hts_log
[function]
[call site]
03896
isspace_c
[function]
[call site]
03897
isspace_c
[function]
[call site]
03898
kh_get_tag
[function]
[call site]
03899
possibly_expand_bam_data
[function]
[call site]
03900
isspace_c
[function]
[call site]
03901
hts_log
[function]
[call site]
03902
possibly_expand_bam_data
[function]
[call site]
03903
hts_str2int
[function]
[call site]
03904
i16_to_le
[function]
[call site]
03905
u16_to_le
[function]
[call site]
03906
i32_to_le
[function]
[call site]
03907
u32_to_le
[function]
[call site]
03908
hts_str2uint
[function]
[call site]
03909
u16_to_le
[function]
[call site]
03910
u32_to_le
[function]
[call site]
03911
strtod
[call site]
03912
float_to_le
[function]
[call site]
03913
u32_to_le
[function]
[call site]
03914
strtod
[call site]
03915
double_to_le
[function]
[call site]
03916
u64_to_le
[function]
[call site]
03917
strchr
[call site]
03918
strlen
[call site]
03919
isspace_c
[function]
[call site]
03920
hts_log
[function]
[call site]
03921
possibly_expand_bam_data
[function]
[call site]
03922
isspace_c
[function]
[call site]
03923
hts_log
[function]
[call site]
03924
sam_parse_B_vals
[function]
[call site]
03925
sam_parse_B_vals_r
[function]
[call site]
03926
hts_log
[function]
[call site]
03927
aux_type2size
[function]
[call site]
03928
hts_log
[function]
[call site]
03929
possibly_expand_bam_data
[function]
[call site]
03930
hts_log
[function]
[call site]
03931
sam_parse_Bc_vals
[function]
[call site]
03932
grow_B_array
[function]
[call site]
03933
__errno_location
[call site]
03934
possibly_expand_bam_data
[function]
[call site]
03935
hts_log
[function]
[call site]
03936
hts_str2int
[function]
[call site]
03937
sam_parse_BC_vals
[function]
[call site]
03938
grow_B_array
[function]
[call site]
03939
hts_str2uint
[function]
[call site]
03940
sam_parse_Bs_vals
[function]
[call site]
03941
grow_B_array
[function]
[call site]
03942
hts_str2int
[function]
[call site]
03943
i16_to_le
[function]
[call site]
03944
sam_parse_BS_vals
[function]
[call site]
03945
grow_B_array
[function]
[call site]
03946
hts_str2uint
[function]
[call site]
03947
u16_to_le
[function]
[call site]
03948
sam_parse_Bi_vals
[function]
[call site]
03949
grow_B_array
[function]
[call site]
03950
hts_str2int
[function]
[call site]
03951
i32_to_le
[function]
[call site]
03952
sam_parse_BI_vals
[function]
[call site]
03953
grow_B_array
[function]
[call site]
03954
hts_str2uint
[function]
[call site]
03955
u32_to_le
[function]
[call site]
03956
sam_parse_Bf_vals
[function]
[call site]
03957
grow_B_array
[function]
[call site]
03958
strtod
[call site]
03959
float_to_le
[function]
[call site]
03960
hts_log
[function]
[call site]
03961
i32_to_le
[function]
[call site]
03962
hts_str2int
[function]
[call site]
03963
sam_parse_B_vals_r
[function]
[call site]
03964
sam_parse_B_vals_r
[function]
[call site]
03965
sam_parse_B_vals_r
[function]
[call site]
03966
sam_parse_B_vals_r
[function]
[call site]
03967
sam_parse_B_vals_r
[function]
[call site]
03968
sam_parse_B_vals_r
[function]
[call site]
03969
hts_log
[function]
[call site]
03970
isspace_c
[function]
[call site]
03971
hts_strprint
[function]
[call site]
03972
hts_log
[function]
[call site]
03973
isspace_c
[function]
[call site]
03974
hts_log
[function]
[call site]
03975
bam_tag2cigar
[function]
[call site]
03976
sam_state_destroy
[function]
[call site]
03977
__errno_location
[call site]
03978
bgzf_seek
[function]
[call site]
03979
bgzf_seek_common
[function]
[call site]
03980
sam_hdr_fill_hrecs
[function]
[call site]
03981
pthread_create
[call site]
03982
sam_dispatcher_read
[function]
[call site]
03983
ks_resize
[function]
[call site]
03984
pthread_mutex_lock
[call site]
03985
pthread_cond_signal
[call site]
03986
pthread_mutex_unlock
[call site]
03987
hts_tpool_process_shutdown
[function]
[call site]
03988
pthread_mutex_unlock
[call site]
03989
pthread_mutex_lock
[call site]
03990
pthread_mutex_unlock
[call site]
03991
calloc
[call site]
03992
hts_malloc_ps
[function]
[call site]
03993
hts_realloc_ps
[function]
[call site]
03994
hts_add_sat2
[function]
[call site]
03995
hts_prod_sat2
[function]
[call site]
03996
hts_realloc
[function]
[call site]
03997
bgzf_read
[function]
[call site]
03998
hread
[function]
[call site]
03999
__errno_location
[call site]
04000
sam_state_err
[function]
[call site]
04001
hts_realloc_pse
[function]
[call site]
04002
hts_add_sat2
[function]
[call site]
04003
hts_prod_sat2
[function]
[call site]
04004
hts_add_sat2
[function]
[call site]
04005
hts_realloc
[function]
[call site]
04006
__assert_fail
[call site]
04007
__assert_fail
[call site]
04008
__assert_fail
[call site]
04009
ks_resize
[function]
[call site]
04010
hts_tpool_dispatch3
[function]
[call site]
04011
sam_parse_worker
[function]
[call site]
04012
pthread_mutex_lock
[call site]
04013
pthread_mutex_unlock
[call site]
04014
calloc
[call site]
04015
calloc
[call site]
04016
sam_state_err
[function]
[call site]
04017
sam_state_err
[function]
[call site]
04018
hts_realloc_p
[function]
[call site]
04019
sam_state_err
[function]
[call site]
04020
strchr
[call site]
04021
sam_parse1
[function]
[call site]
04022
__errno_location
[call site]
04023
sam_state_err
[function]
[call site]
04024
cleanup_sp_lines
[function]
[call site]
04025
__assert_fail
[call site]
04026
sam_free_sp_bams
[function]
[call site]
04027
pthread_mutex_lock
[call site]
04028
pthread_mutex_unlock
[call site]
04029
sam_free_sp_bams
[function]
[call site]
04030
cleanup_sp_lines
[function]
[call site]
04031
cleanup_sp_bams
[function]
[call site]
04032
sam_free_sp_bams
[function]
[call site]
04033
pthread_mutex_lock
[call site]
04034
pthread_mutex_unlock
[call site]
04035
pthread_mutex_unlock
[call site]
04036
hts_tpool_dispatch
[function]
[call site]
04037
sam_parse_eof
[function]
[call site]
04038
pthread_mutex_lock
[call site]
04039
pthread_cond_wait
[call site]
04040
pthread_cond_signal
[call site]
04041
pthread_mutex_unlock
[call site]
04042
hts_tpool_process_shutdown
[function]
[call site]
04043
pthread_mutex_unlock
[call site]
04044
pthread_mutex_lock
[call site]
04045
pthread_cond_signal
[call site]
04046
pthread_mutex_unlock
[call site]
04047
pthread_mutex_lock
[call site]
04048
pthread_mutex_unlock
[call site]
04049
__errno_location
[call site]
04050
sam_state_err
[function]
[call site]
04051
hts_tpool_process_shutdown
[function]
[call site]
04052
hts_log
[function]
[call site]
04053
__errno_location
[call site]
04054
pthread_mutex_lock
[call site]
04055
pthread_mutex_unlock
[call site]
04056
hts_tpool_next_result_wait
[function]
[call site]
04057
hts_tpool_result_data
[function]
[call site]
04058
hts_tpool_delete_result
[function]
[call site]
04059
pthread_mutex_lock
[call site]
04060
pthread_mutex_unlock
[call site]
04061
bam_copy1
[function]
[call site]
04062
pthread_mutex_lock
[call site]
04063
pthread_mutex_unlock
[call site]
04064
hts_getline
[function]
[call site]
04065
sam_parse1
[function]
[call site]
04066
hts_log
[function]
[call site]
04067
fastq_state_init
[function]
[call site]
04068
fastq_parse1
[function]
[call site]
04069
hts_getline
[function]
[call site]
04070
strpbrk
[call site]
04071
isspace_c
[function]
[call site]
04072
isspace_c
[function]
[call site]
04073
hts_getline
[function]
[call site]
04074
kputsn
[function]
[call site]
04075
hts_getline
[function]
[call site]
04076
kputsn
[function]
[call site]
04077
isdigit_c
[function]
[call site]
04078
regexec
[call site]
04079
hts_log
[function]
[call site]
04080
isalpha_c
[function]
[call site]
04081
bam_set1
[function]
[call site]
04082
bam_aux_append
[function]
[call site]
04083
__assert_fail
[call site]
04084
realloc_bam_data
[function]
[call site]
04085
__errno_location
[call site]
04086
isdigit_c
[function]
[call site]
04087
strtol
[call site]
04088
isdigit_c
[function]
[call site]
04089
isspace_c
[function]
[call site]
04090
bam_aux_append
[function]
[call site]
04091
aux_parse
[function]
[call site]
04092
__errno_location
[call site]
04093
__errno_location
[call site]
04094
sam_passes_filter
[function]
[call site]
04095
hts_filter_eval2
[function]
[call site]
04096
ks_free
[function]
[call site]
04097
hts_filter_eval_
[function]
[call site]
04098
expression
[function]
[call site]
04099
and_expr
[function]
[call site]
04100
eq_expr
[function]
[call site]
04101
cmp_expr
[function]
[call site]
04102
bitor_expr
[function]
[call site]
04103
bitxor_expr
[function]
[call site]
04104
bitand_expr
[function]
[call site]
04105
add_expr
[function]
[call site]
04106
mul_expr
[function]
[call site]
04107
unary_expr
[function]
[call site]
04108
ws
[function]
[call site]
04109
simple_expr
[function]
[call site]
04110
ws
[function]
[call site]
04111
expression
[function]
[call site]
04112
ws
[function]
[call site]
04113
fprintf
[call site]
04114
hts_str2dbl
[function]
[call site]
04115
ks_clear
[function]
[call site]
04119
kputsn
[function]
[call site]
04120
func_expr
[function]
[call site]
04121
strncmp
[call site]
04122
expression
[function]
[call site]
04123
expr_func_avg
[function]
[call site]
04124
strncmp
[call site]
04125
expression
[function]
[call site]
04126
ws
[function]
[call site]
04127
expression
[function]
[call site]
04128
hts_expr_val_existsT
[function]
[call site]
04129
hts_expr_val_exists
[function]
[call site]
04130
hts_expr_val_free
[function]
[call site]
04131
ks_free
[function]
[call site]
04132
strncmp
[call site]
04133
expression
[function]
[call site]
04134
hts_expr_val_existsT
[function]
[call site]
04135
strncmp
[call site]
04136
expression
[function]
[call site]
04137
exp
[call site]
04138
hts_expr_val_undef
[function]
[call site]
04139
ks_clear
[function]
[call site]
04140
strncmp
[call site]
04141
expression
[function]
[call site]
04142
expr_func_length
[function]
[call site]
04143
strncmp
[call site]
04144
expression
[function]
[call site]
04145
log
[call site]
04146
hts_expr_val_undef
[function]
[call site]
04147
strncmp
[call site]
04148
expression
[function]
[call site]
04149
expr_func_min
[function]
[call site]
04150
strncmp
[call site]
04151
expression
[function]
[call site]
04152
expr_func_max
[function]
[call site]
04153
strncmp
[call site]
04154
expression
[function]
[call site]
04155
ws
[function]
[call site]
04156
expression
[function]
[call site]
04157
hts_expr_val_exists
[function]
[call site]
04158
hts_expr_val_undef
[function]
[call site]
04159
hts_expr_val_free
[function]
[call site]
04160
pow
[call site]
04161
hts_expr_val_free
[function]
[call site]
04162
hts_expr_val_undef
[function]
[call site]
04163
strncmp
[call site]
04164
expression
[function]
[call site]
04165
sqrt
[call site]
04166
hts_expr_val_undef
[function]
[call site]
04167
ws
[function]
[call site]
04168
fprintf
[call site]
04169
hts_expr_val_exists
[function]
[call site]
04170
hts_expr_val_undef
[function]
[call site]
04171
unary_expr
[function]
[call site]
04172
hts_expr_val_exists
[function]
[call site]
04173
unary_expr
[function]
[call site]
04174
hts_expr_val_exists
[function]
[call site]
04175
hts_expr_val_undef
[function]
[call site]
04176
hts_expr_val_exists
[function]
[call site]
04177
hts_expr_val_undef
[function]
[call site]
04178
simple_expr
[function]
[call site]
04179
ws
[function]
[call site]
04180
unary_expr
[function]
[call site]
04181
hts_expr_val_exists
[function]
[call site]
04182
hts_expr_val_undef
[function]
[call site]
04183
hts_expr_val_free
[function]
[call site]
04184
hts_expr_val_undef
[function]
[call site]
04185
hts_expr_val_exists
[function]
[call site]
04186
hts_expr_val_free
[function]
[call site]
04187
ws
[function]
[call site]
04188
mul_expr
[function]
[call site]
04189
hts_expr_val_exists
[function]
[call site]
04190
hts_expr_val_free
[function]
[call site]
04191
hts_expr_val_undef
[function]
[call site]
04192
hts_expr_val_free
[function]
[call site]
04193
ws
[function]
[call site]
04194
add_expr
[function]
[call site]
04195
hts_expr_val_exists
[function]
[call site]
04196
hts_expr_val_free
[function]
[call site]
04197
hts_expr_val_free
[function]
[call site]
04198
hts_expr_val_undef
[function]
[call site]
04199
ws
[function]
[call site]
04200
bitand_expr
[function]
[call site]
04201
hts_expr_val_exists
[function]
[call site]
04202
hts_expr_val_free
[function]
[call site]
04203
hts_expr_val_free
[function]
[call site]
04204
hts_expr_val_undef
[function]
[call site]
04205
ws
[function]
[call site]
04206
bitxor_expr
[function]
[call site]
04207
hts_expr_val_exists
[function]
[call site]
04208
hts_expr_val_free
[function]
[call site]
04209
hts_expr_val_free
[function]
[call site]
04210
hts_expr_val_undef
[function]
[call site]
04211
ws
[function]
[call site]
04212
cmp_expr
[function]
[call site]
04213
hts_expr_val_exists
[function]
[call site]
04214
hts_expr_val_undef
[function]
[call site]
04215
strcmp
[call site]
04216
cmp_expr
[function]
[call site]
04217
hts_expr_val_exists
[function]
[call site]
04218
hts_expr_val_undef
[function]
[call site]
04219
strcmp
[call site]
04220
cmp_expr
[function]
[call site]
04221
hts_expr_val_exists
[function]
[call site]
04222
hts_expr_val_undef
[function]
[call site]
04223
strcmp
[call site]
04224
cmp_expr
[function]
[call site]
04225
hts_expr_val_exists
[function]
[call site]
04226
hts_expr_val_undef
[function]
[call site]
04227
strcmp
[call site]
04228
hts_expr_val_exists
[function]
[call site]
04229
hts_expr_val_undef
[function]
[call site]
04230
hts_expr_val_free
[function]
[call site]
04231
ws
[function]
[call site]
04232
eq_expr
[function]
[call site]
04233
hts_expr_val_exists
[function]
[call site]
04234
hts_expr_val_undef
[function]
[call site]
04235
strcmp
[call site]
04236
eq_expr
[function]
[call site]
04237
hts_expr_val_exists
[function]
[call site]
04238
hts_expr_val_undef
[function]
[call site]
04239
strcmp
[call site]
04240
eq_expr
[function]
[call site]
04241
hts_expr_val_free
[function]
[call site]
04242
regcomp
[call site]
04243
regerror
[call site]
04244
fprintf
[call site]
04245
hts_expr_val_free
[function]
[call site]
04246
regexec
[call site]
04247
regfree
[call site]
04248
hts_expr_val_exists
[function]
[call site]
04249
hts_expr_val_undef
[function]
[call site]
04250
hts_expr_val_free
[function]
[call site]
04251
ws
[function]
[call site]
04252
eq_expr
[function]
[call site]
04253
hts_expr_val_existsT
[function]
[call site]
04254
hts_expr_val_undef
[function]
[call site]
04255
eq_expr
[function]
[call site]
04256
hts_expr_val_existsT
[function]
[call site]
04257
hts_expr_val_undef
[function]
[call site]
04258
hts_expr_val_existsT
[function]
[call site]
04259
hts_expr_val_undef
[function]
[call site]
04260
hts_expr_val_existsT
[function]
[call site]
04261
hts_expr_val_undef
[function]
[call site]
04262
hts_expr_val_free
[function]
[call site]
04263
ws
[function]
[call site]
04264
fprintf
[call site]
04265
hts_expr_val_exists
[function]
[call site]
04266
bam_sym_lookup
[function]
[call site]
04267
memcmp
[call site]
04268
ks_clear
[function]
[call site]
04269
kputw
[function]
[call site]
04270
kputc_
[function]
[call site]
04271
kputs
[function]
[call site]
04272
kputs
[function]
[call site]
04273
memcmp
[call site]
04274
bam_endpos
[function]
[call site]
04275
memcmp
[call site]
04276
memcmp
[call site]
04277
memcmp
[call site]
04278
memcmp
[call site]
04279
memcmp
[call site]
04280
memcmp
[call site]
04281
memcmp
[call site]
04282
memcmp
[call site]
04283
memcmp
[call site]
04284
memcmp
[call site]
04285
memcmp
[call site]
04286
memcmp
[call site]
04287
memcmp
[call site]
04288
hts_log
[function]
[call site]
04289
memcmp
[call site]
04290
memcmp
[call site]
04291
bam_get_library
[function]
[call site]
04292
bam_aux_get
[function]
[call site]
04293
sam_hdr_find_tag_id
[function]
[call site]
04294
ks_clear
[function]
[call site]
04295
kputs
[function]
[call site]
04296
memcmp
[call site]
04297
memcmp
[call site]
04298
memcmp
[call site]
04299
sam_hdr_tid2name
[function]
[call site]
04300
ks_clear
[function]
[call site]
04301
kputs
[function]
[call site]
04302
memcmp
[call site]
04303
memcmp
[call site]
04304
memcmp
[call site]
04305
memcmp
[call site]
04306
memcmp
[call site]
04307
bam_cigar2qlen
[function]
[call site]
04308
memcmp
[call site]
04309
ks_clear
[function]
[call site]
04310
kputs
[function]
[call site]
04311
memcmp
[call site]
04312
ks_clear
[function]
[call site]
04313
ks_resize
[function]
[call site]
04314
memcmp
[call site]
04315
bam_cigar2rlen
[function]
[call site]
04316
memcmp
[call site]
04317
sam_hdr_tid2name
[function]
[call site]
04318
ks_clear
[function]
[call site]
04319
kputs
[function]
[call site]
04320
memcmp
[call site]
04321
sam_hdr_tid2name
[function]
[call site]
04322
ks_clear
[function]
[call site]
04323
kputs
[function]
[call site]
04324
memcmp
[call site]
04325
memcmp
[call site]
04326
ks_clear
[function]
[call site]
04327
ks_resize
[function]
[call site]
04328
nibble2base
[function]
[call site]
04329
memcmp
[call site]
04330
memcmp
[call site]
04331
bam_aux_get
[function]
[call site]
04332
ks_clear
[function]
[call site]
04333
kputs
[function]
[call site]
04334
ks_clear
[function]
[call site]
04335
kputsn
[function]
[call site]
04336
bam_aux2i
[function]
[call site]
04337
get_int_aux_val
[function]
[call site]
04338
le_to_i8
[function]
[call site]
04339
le_to_i16
[function]
[call site]
04340
le_to_u16
[function]
[call site]
04341
le_to_i32
[function]
[call site]
04342
le_to_u32
[function]
[call site]
04343
__errno_location
[call site]
04344
bam_aux2f
[function]
[call site]
04345
le_to_double
[function]
[call site]
04346
le_to_float
[function]
[call site]
04347
get_int_aux_val
[function]
[call site]
04348
hts_log
[function]
[call site]
04349
hts_log
[function]
[call site]
04350
hts_expr_val_free
[function]
[call site]
04351
hts_expr_val_free
[function]
[call site]
04352
sam_write1
[function]
[call site]
04353
bam_write_idx1
[function]
[call site]
04354
bam_write1
[function]
[call site]
04355
hts_log
[function]
[call site]
04356
__errno_location
[call site]
04357
hts_log
[function]
[call site]
04358
bgzf_flush_try
[function]
[call site]
04359
lazy_flush
[function]
[call site]
04360
ed_swap_4p
[function]
[call site]
04361
ed_swap_4p
[function]
[call site]
04362
bgzf_write_small
[function]
[call site]
04363
bgzf_write
[function]
[call site]
04364
swap_data
[function]
[call site]
04365
bgzf_write_small
[function]
[call site]
04366
bgzf_write_small
[function]
[call site]
04367
bgzf_write_small
[function]
[call site]
04368
bgzf_write_small
[function]
[call site]
04369
bam_cigar2rlen
[function]
[call site]
04370
hts_log
[function]
[call site]
04371
u32_to_le
[function]
[call site]
04372
u32_to_le
[function]
[call site]
04373
bgzf_write_small
[function]
[call site]
04374
bgzf_write_small
[function]
[call site]
04375
bgzf_write_small
[function]
[call site]
04376
u32_to_le
[function]
[call site]
04377
bgzf_write_small
[function]
[call site]
04378
bgzf_write_small
[function]
[call site]
04379
swap_data
[function]
[call site]
04380
bgzf_flush_try
[function]
[call site]
04381
hts_idx_amend_last
[function]
[call site]
04382
bam_write1
[function]
[call site]
04383
bam_endpos
[function]
[call site]
04384
bgzf_idx_push
[function]
[call site]
04385
hts_idx_push
[function]
[call site]
04386
hts_idx_check_range
[function]
[call site]
04387
hts_idx_maxpos
[function]
[call site]
04388
hts_bin_maxpos
[function]
[call site]
04389
hts_log
[function]
[call site]
04390
idx_format_name
[function]
[call site]
04391
hts_log
[function]
[call site]
04392
__errno_location
[call site]
04393
hts_realloc_p
[function]
[call site]
04394
hts_realloc_p
[function]
[call site]
04395
hts_log
[function]
[call site]
04396
hts_log
[function]
[call site]
04397
hts_log
[function]
[call site]
04398
hts_log
[function]
[call site]
04399
kh_init_bin
[function]
[call site]
04400
calloc
[call site]
04401
insert_to_l
[function]
[call site]
04402
hts_realloc_p
[function]
[call site]
04403
hts_reg2bin
[function]
[call site]
04404
insert_to_b
[function]
[call site]
04405
kh_put_bin
[function]
[call site]
04406
kh_resize_bin
[function]
[call site]
04407
realloc
[call site]
04408
calloc
[call site]
04409
kh_del_bin
[function]
[call site]
04410
hts_realloc_p
[function]
[call site]
04411
insert_to_b
[function]
[call site]
04412
insert_to_b
[function]
[call site]
04413
hts_idx_check_range
[function]
[call site]
04414
pthread_mutex_lock
[call site]
04415
hts_realloc_p
[function]
[call site]
04416
pthread_mutex_unlock
[call site]
04417
pthread_mutex_unlock
[call site]
04418
sam_hdr_tid2name
[function]
[call site]
04419
sam_hdr_tid2len
[function]
[call site]
04420
kh_get_s2i
[function]
[call site]
04421
hts_log
[function]
[call site]
04422
cram_put_bam_seq
[function]
[call site]
04423
cram_new_container
[function]
[call site]
04424
pthread_mutex_lock
[call site]
04425
pthread_mutex_unlock
[call site]
04426
hts_log
[function]
[call site]
04427
pthread_mutex_lock
[call site]
04428
hts_log
[function]
[call site]
04429
pthread_mutex_unlock
[call site]
04430
cram_next_container
[function]
[call site]
04431
cram_update_curr_slice
[function]
[call site]
04432
hts_log
[function]
[call site]
04433
cram_flush_container_mt
[function]
[call site]
04434
cram_free_slice
[function]
[call site]
04435
cram_free_container
[function]
[call site]
04436
cram_new_container
[function]
[call site]
04437
pthread_mutex_lock
[call site]
04438
pthread_mutex_unlock
[call site]
04439
cram_new_slice
[function]
[call site]
04440
calloc
[call site]
04441
calloc
[call site]
04442
hts_malloc_p
[function]
[call site]
04443
hts_malloc_p
[function]
[call site]
04444
cram_new_block
[function]
[call site]
04445
cram_new_block
[function]
[call site]
04446
cram_new_block
[function]
[call site]
04447
cram_new_block
[function]
[call site]
04448
cram_new_block
[function]
[call site]
04449
cram_new_block
[function]
[call site]
04450
string_pool_create
[function]
[call site]
04451
kh_init_m_s2i
[function]
[call site]
04452
kh_init_m_s2i
[function]
[call site]
04453
cram_free_slice
[function]
[call site]
04454
pthread_mutex_lock
[call site]
04455
hts_log
[function]
[call site]
04456
pthread_mutex_lock
[call site]
04457
calloc
[call site]
04458
pthread_mutex_unlock
[call site]
04459
pthread_mutex_lock
[call site]
04460
calloc
[call site]
04461
pthread_mutex_unlock
[call site]
04462
pthread_mutex_lock
[call site]
04463
pthread_mutex_unlock
[call site]
04464
pthread_mutex_lock
[call site]
04465
hts_realloc_p
[function]
[call site]
04466
pthread_mutex_unlock
[call site]
04467
bam_set_mempolicy
[function]
[call site]
04468
calloc
[call site]
04469
pthread_mutex_unlock
[call site]
04470
bam_set_mempolicy
[function]
[call site]
04471
pthread_mutex_unlock
[call site]
04472
bam_copy1
[function]
[call site]
04473
bam_cigar2qlen
[function]
[call site]
04474
hts_log
[function]
[call site]
04475
pthread_create
[call site]
04476
sam_dispatcher_write
[function]
[call site]
04477
hts_tpool_next_result_wait
[function]
[call site]
04478
hts_tpool_result_data
[function]
[call site]
04479
sam_state_err
[function]
[call site]
04480
bgzf_flush_try
[function]
[call site]
04481
bgzf_write
[function]
[call site]
04482
hwrite
[function]
[call site]
04483
bam_endpos
[function]
[call site]
04484
bgzf_idx_push
[function]
[call site]
04485
__errno_location
[call site]
04486
sam_state_err
[function]
[call site]
04487
sam_hdr_tid2name
[function]
[call site]
04488
sam_hdr_tid2len
[function]
[call site]
04489
hts_log
[function]
[call site]
04490
bam_endpos
[function]
[call site]
04491
hts_idx_push
[function]
[call site]
04492
__errno_location
[call site]
04493
sam_state_err
[function]
[call site]
04494
sam_hdr_tid2name
[function]
[call site]
04495
sam_hdr_tid2len
[function]
[call site]
04496
hts_log
[function]
[call site]
04497
__assert_fail
[call site]
04498
pthread_mutex_lock
[call site]
04499
pthread_mutex_unlock
[call site]
04500
bgzf_write
[function]
[call site]
04501
bgzf_flush_try
[function]
[call site]
04502
bgzf_write
[function]
[call site]
04503
hwrite
[function]
[call site]
04504
hts_tpool_delete_result
[function]
[call site]
04505
pthread_mutex_lock
[call site]
04506
pthread_mutex_unlock
[call site]
04507
sam_state_err
[function]
[call site]
04508
hts_tpool_process_shutdown
[function]
[call site]
04509
__errno_location
[call site]
04510
sam_state_err
[function]
[call site]
04511
hts_log
[function]
[call site]
04512
pthread_mutex_lock
[call site]
04513
pthread_mutex_unlock
[call site]
04514
pthread_mutex_unlock
[call site]
04515
calloc
[call site]
04516
calloc
[call site]
04517
bam_copy1
[function]
[call site]
04518
pthread_mutex_lock
[call site]
04519
pthread_mutex_unlock
[call site]
04520
hts_tpool_dispatch3
[function]
[call site]
04521
sam_format_worker
[function]
[call site]
04522
cleanup_sp_bams
[function]
[call site]
04523
cleanup_sp_lines
[function]
[call site]
04524
pthread_mutex_unlock
[call site]
04525
pthread_mutex_unlock
[call site]
04526
sam_format1
[function]
[call site]
04527
sam_format1_append
[function]
[call site]
04528
kputc
[function]
[call site]
04529
bgzf_flush_try
[function]
[call site]
04530
bgzf_write
[function]
[call site]
04531
hwrite
[function]
[call site]
04532
bam_endpos
[function]
[call site]
04533
bgzf_idx_push
[function]
[call site]
04534
sam_hdr_tid2name
[function]
[call site]
04535
sam_hdr_tid2len
[function]
[call site]
04536
hts_log
[function]
[call site]
04537
bam_endpos
[function]
[call site]
04538
hts_idx_push
[function]
[call site]
04539
sam_hdr_tid2name
[function]
[call site]
04540
sam_hdr_tid2len
[function]
[call site]
04541
hts_log
[function]
[call site]
04542
fastq_state_init
[function]
[call site]
04543
fastq_format1
[function]
[call site]
04544
kputc
[function]
[call site]
04545
kputs
[function]
[call site]
04546
bam_aux_get
[function]
[call site]
04547
kputc
[function]
[call site]
04548
isalpha_c
[function]
[call site]
04549
toupper_c
[function]
[call site]
04550
kputc
[function]
[call site]
04551
kputs
[function]
[call site]
04552
kputs
[function]
[call site]
04553
kputs
[function]
[call site]
04554
bam_aux_get
[function]
[call site]
04555
ksprintf
[function]
[call site]
04556
isupper_c
[function]
[call site]
04557
__ctype_b_loc
[call site]
04558
islower_c
[function]
[call site]
04559
__ctype_b_loc
[call site]
04560
hts_log
[function]
[call site]
04561
strlen
[call site]
04562
strlen
[call site]
04563
isalpha_c
[function]
[call site]
04564
islower_c
[function]
[call site]
04565
toupper_c
[function]
[call site]
04566
kh_get_tag
[function]
[call site]
04567
kputc_
[function]
[call site]
04568
sam_format_aux1
[function]
[call site]
04569
skip_aux
[function]
[call site]
04570
kputsn
[function]
[call site]
04571
ks_resize
[function]
[call site]
04572
kputc_
[function]
[call site]
04573
kputc_
[function]
[call site]
04574
kputc_
[function]
[call site]
04575
kputsn
[function]
[call site]
04576
kputc_
[function]
[call site]
04577
kputc_
[function]
[call site]
04578
kputc_
[function]
[call site]
04579
kputc
[function]
[call site]
04580
bgzf_flush_try
[function]
[call site]
04581
bgzf_write
[function]
[call site]
04582
hwrite
[function]
[call site]
04583
__errno_location
[call site]
04584
bam_destroy1
[function]
[call site]
04585
sam_hdr_destroy
[function]
[call site]
04586
hts_close_or_abort
[function]
[call site]
04587
hts_close
[function]
[call site]
04588
hts_close
[function]
[call site]
04589
view_sam
[function]
[call site]
04590
view_sam
[function]
[call site]
04591
view_vcf
[function]
[call site]
04592
abort
[call site]
04593
hopen
[function]
[call site]
04594
hts_hopen
[function]
[call site]
04595
hclose
[function]
[call site]
04596
abort
[call site]
04597
hts_open
[function]
[call site]
04598
abort
[call site]
04599
bcf_hdr_read
[function]
[call site]
04600
vcf_hdr_read
[function]
[call site]
04601
bcf_hdr_init
[function]
[call site]
04602
calloc
[call site]
04603
kh_init_vdict
[function]
[call site]
04604
calloc
[call site]
04605
kh_resize_vdict
[function]
[call site]
04606
realloc
[call site]
04607
__ac_FNV1a_hash_string
[function]
[call site]
04608
calloc
[call site]
04609
kh_init_hdict
[function]
[call site]
04610
strchr
[call site]
04611
bcf_hdr_append
[function]
[call site]
04612
bcf_hdr_parse_line
[function]
[call site]
04613
calloc
[call site]
04614
hts_malloc_ps
[function]
[call site]
04615
hts_malloc_p
[function]
[call site]
04616
isalpha_c
[function]
[call site]
04617
isalnum_c
[function]
[call site]
04618
bcf_hrec_add_key
[function]
[call site]
04619
__assert_fail
[call site]
04620
hts_realloc_p
[function]
[call site]
04621
hts_realloc_p
[function]
[call site]
04622
hts_malloc_ps
[function]
[call site]
04623
is_escaped
[function]
[call site]
04624
hts_strprint
[function]
[call site]
04625
hts_log
[function]
[call site]
04626
bcf_hrec_set_val
[function]
[call site]
04627
__errno_location
[call site]
04628
hts_malloc_ps
[function]
[call site]
04629
__errno_location
[call site]
04630
hts_malloc_ps
[function]
[call site]
04631
hts_log
[function]
[call site]
04632
isspace_c
[function]
[call site]
04633
hts_strprint
[function]
[call site]
04634
hts_log
[function]
[call site]
04635
bcf_hrec_destroy
[function]
[call site]
04636
hts_strprint
[function]
[call site]
04637
hts_log
[function]
[call site]
04638
bcf_hrec_destroy
[function]
[call site]
04639
bcf_hdr_add_hrec
[function]
[call site]
04640
get_hdr_aux
[function]
[call site]
04641
bcf_hrec_check
[function]
[call site]
04642
bcf_hrec_set_type
[function]
[call site]
04643
strcmp
[call site]
04644
strcmp
[call site]
04645
strcmp
[call site]
04646
strcmp
[call site]
04647
bcf_hrec_find_key
[function]
[call site]
04648
strcasecmp
[call site]
04649
bcf_hrec_find_key
[function]
[call site]
04650
strcmp
[call site]
04651
bcf_hrec_find_key
[function]
[call site]
04652
hts_log
[function]
[call site]
04653
hts_log
[function]
[call site]
04654
hts_log
[function]
[call site]
04655
bcf_hdr_register_hrec
[function]
[call site]
04656
bcf_hrec_set_type
[function]
[call site]
04657
bcf_hrec_find_key
[function]
[call site]
04658
strtoll
[call site]
04659
bcf_hrec_find_key
[function]
[call site]
04660
strdup
[call site]
04661
kh_get_vdict
[function]
[call site]
04662
strcmp
[call site]
04663
kh_put_vdict
[function]
[call site]
04664
kh_resize_vdict
[function]
[call site]
04665
bcf_hrec_find_key
[function]
[call site]
04666
strtol
[call site]
04667
kh_del_vdict
[function]
[call site]
04668
hts_log
[function]
[call site]
04669
bcf_hdr_set_idx
[function]
[call site]
04670
hts_log
[function]
[call site]
04671
__errno_location
[call site]
04672
hts_resize_array_
[function]
[call site]
04673
hts_log
[function]
[call site]
04674
__errno_location
[call site]
04675
realloc
[call site]
04676
__errno_location
[call site]
04677
__errno_location
[call site]
04678
strerror
[call site]
04679
hts_log
[function]
[call site]
04680
__errno_location
[call site]
04681
abort
[call site]
04682
abort
[call site]
04683
kh_del_vdict
[function]
[call site]
04684
hrec_add_idx
[function]
[call site]
04685
hts_realloc_p
[function]
[call site]
04686
hts_realloc_p
[function]
[call site]
04687
strdup
[call site]
04688
kputw
[function]
[call site]
04689
strcmp
[call site]
04690
strcmp
[call site]
04691
strtol
[call site]
04692
hts_log
[function]
[call site]
04693
strcmp
[call site]
04694
strcmp
[call site]
04695
strcmp
[call site]
04696
strcmp
[call site]
04697
strcmp
[call site]
04698
strcmp
[call site]
04699
hts_log
[function]
[call site]
04700
strcmp
[call site]
04701
strcmp
[call site]
04702
strcmp
[call site]
04703
strcmp
[call site]
04704
strcmp
[call site]
04705
strcmp
[call site]
04706
strcmp
[call site]
04707
strcmp
[call site]
04708
strcmp
[call site]
04709
strcmp
[call site]
04710
__isoc99_sscanf
[call site]
04711
hts_log
[function]
[call site]
04712
hts_log
[function]
[call site]
04713
hts_log
[function]
[call site]
04714
strdup
[call site]
04715
kh_get_vdict
[function]
[call site]
04716
hrec_add_idx
[function]
[call site]
04717
kh_put_vdict
[function]
[call site]
04718
bcf_hdr_set_idx
[function]
[call site]
04719
kh_del_vdict
[function]
[call site]
04720
hrec_add_idx
[function]
[call site]
04721
bcf_hrec_destroy
[function]
[call site]
04722
ksprintf
[function]
[call site]
04723
kh_get_hdict
[function]
[call site]
04724
bcf_hrec_destroy
[function]
[call site]
04725
strcmp
[call site]
04726
bcf_get_version
[function]
[call site]
04727
get_hdr_aux
[function]
[call site]
04728
bcf_hdr_get_version
[function]
[call site]
04729
bcf_hdr_get_hrec
[function]
[call site]
04730
ksprintf
[function]
[call site]
04731
get_hdr_aux
[function]
[call site]
04732
kh_get_hdict
[function]
[call site]
04733
strcmp
[call site]
04734
strcmp
[call site]
04735
ksprintf
[function]
[call site]
04736
get_hdr_aux
[function]
[call site]
04737
kh_get_hdict
[function]
[call site]
04738
strcmp
[call site]
04739
bcf_hrec_find_key
[function]
[call site]
04740
strcmp
[call site]
04741
kh_get_vdict
[function]
[call site]
04742
hts_log
[function]
[call site]
04743
strstr
[call site]
04744
strchr
[call site]
04745
strtol
[call site]
04746
__errno_location
[call site]
04747
__errno_location
[call site]
04748
strtol
[call site]
04749
__errno_location
[call site]
04750
hts_log
[function]
[call site]
04751
bcf_hrec_find_key
[function]
[call site]
04752
ksprintf
[function]
[call site]
04753
kh_get_hdict
[function]
[call site]
04754
bcf_hrec_destroy
[function]
[call site]
04755
hts_realloc_p
[function]
[call site]
04756
bcf_hdr_unregister_hrec
[function]
[call site]
04757
bcf_hrec_find_key
[function]
[call site]
04758
kh_get_vdict
[function]
[call site]
04759
kh_put_hdict
[function]
[call site]
04760
kh_resize_hdict
[function]
[call site]
04761
bcf_hdr_append
[function]
[call site]
04762
kh_destroy_vdict
[function]
[call site]
04763
hts_getline
[function]
[call site]
04764
hts_log
[function]
[call site]
04765
hopen
[function]
[call site]
04766
khgetline
[function]
[call site]
04767
strchr
[call site]
04768
kputs
[function]
[call site]
04769
kputsn
[function]
[call site]
04770
kputs
[function]
[call site]
04771
atol
[call site]
04772
kputl
[function]
[call site]
04773
kputll
[function]
[call site]
04774
kputsn
[function]
[call site]
04775
hclose
[function]
[call site]
04776
hts_log
[function]
[call site]
04777
kputsn
[function]
[call site]
04778
kputc
[function]
[call site]
04779
hts_log
[function]
[call site]
04780
bcf_hdr_parse
[function]
[call site]
04781
bcf_hdr_parse_line
[function]
[call site]
04782
strcasecmp
[call site]
04783
hts_log
[function]
[call site]
04784
bcf_hdr_add_hrec
[function]
[call site]
04785
bcf_hrec_destroy
[function]
[call site]
04786
bcf_hdr_parse_line
[function]
[call site]
04787
bcf_hdr_add_hrec
[function]
[call site]
04788
bcf_hrec_destroy
[function]
[call site]
04789
bcf_hdr_parse_line
[function]
[call site]
04790
bcf_hdr_add_hrec
[function]
[call site]
04791
bcf_hrec_destroy
[function]
[call site]
04792
__assert_fail
[call site]
04793
__errno_location
[call site]
04794
strerror
[call site]
04795
hts_log
[function]
[call site]
04796
strncmp
[call site]
04797
strchr
[call site]
04798
hts_strprint
[function]
[call site]
04799
hts_log
[function]
[call site]
04800
hts_log
[function]
[call site]
04801
bcf_hdr_parse_sample_line
[function]
[call site]
04802
strlen
[call site]
04803
strncmp
[call site]
04804
hts_log
[function]
[call site]
04805
strlen
[call site]
04806
strncmp
[call site]
04807
hts_log
[function]
[call site]
04808
bcf_hdr_add_sample_len
[function]
[call site]
04809
isspace_c
[function]
[call site]
04810
hts_realloc_ps
[function]
[call site]
04811
kh_put_vdict
[function]
[call site]
04812
hts_log
[function]
[call site]
04813
bcf_hdr_sync
[function]
[call site]
04814
hts_realloc_p
[function]
[call site]
04815
get_hdr_aux
[function]
[call site]
04816
bcf_hdr_check_sanity
[function]
[call site]
04817
bcf_get_version
[function]
[call site]
04818
bcf_hdr_id2int
[function]
[call site]
04819
kh_get_vdict
[function]
[call site]
04820
atoi
[call site]
04821
hts_log
[function]
[call site]
04822
hts_log
[function]
[call site]
04823
bcf_hdr_id2int
[function]
[call site]
04824
atoi
[call site]
04825
hts_log
[function]
[call site]
04826
hts_log
[function]
[call site]
04827
tbx_index_load3
[function]
[call site]
04828
index_load
[function]
[call site]
04829
calloc
[call site]
04830
hts_idx_load3
[function]
[call site]
04831
idx_find_and_load
[function]
[call site]
04832
strstr
[call site]
04833
strdup
[call site]
04834
__errno_location
[call site]
04835
strerror
[call site]
04836
hts_log
[function]
[call site]
04837
hts_idx_load3
[function]
[call site]
04838
hisremote
[function]
[call site]
04839
stat
[call site]
04840
hts_log
[function]
[call site]
04841
idx_test_and_fetch
[function]
[call site]
04842
hisremote
[function]
[call site]
04843
strncmp
[call site]
04844
strcspn
[call site]
04845
kputsn
[function]
[call site]
04846
access
[call site]
04847
hopen
[function]
[call site]
04848
hts_log
[function]
[call site]
04849
hts_detect_format2
[function]
[call site]
04850
hts_log
[function]
[call site]
04851
hts_log
[function]
[call site]
04852
hts_open_tmpfile
[function]
[call site]
04853
hts_log
[function]
[call site]
04854
hts_log
[function]
[call site]
04855
calloc
[call site]
04856
__errno_location
[call site]
04857
strerror
[call site]
04858
hts_log
[function]
[call site]
04859
hread
[function]
[call site]
04860
hwrite
[function]
[call site]
04861
__errno_location
[call site]
04862
strerror
[call site]
04863
hts_log
[function]
[call site]
04864
hts_log
[function]
[call site]
04865
hclose
[function]
[call site]
04866
__errno_location
[call site]
04867
strerror
[call site]
04868
hts_log
[function]
[call site]
04869
rename
[call site]
04870
__errno_location
[call site]
04871
strerror
[call site]
04872
hts_log
[function]
[call site]
04873
ks_clear
[function]
[call site]
04874
hclose
[function]
[call site]
04875
hts_log
[function]
[call site]
04876
hopen
[function]
[call site]
04877
hclose_abruptly
[function]
[call site]
04878
strlen
[call site]
04879
__errno_location
[call site]
04880
hclose_abruptly
[function]
[call site]
04881
hclose_abruptly
[function]
[call site]
04882
unlink
[call site]
04883
__errno_location
[call site]
04884
strdup
[call site]
04885
idx_read
[function]
[call site]
04886
bgzf_open
[function]
[call site]
04887
ed_is_big
[function]
[call site]
04888
bgzf_read
[function]
[call site]
04889
memcmp
[call site]
04890
bgzf_read
[function]
[call site]
04891
ed_swap_4p
[function]
[call site]
04892
hts_malloc_ps
[function]
[call site]
04893
bgzf_read
[function]
[call site]
04894
bgzf_read
[function]
[call site]
04895
ed_swap_4p
[function]
[call site]
04896
hts_idx_init
[function]
[call site]
04897
idx_read_core
[function]
[call site]
04901
ed_is_big
[function]
[call site]
04902
kh_init_bin
[function]
[call site]
04903
bgzf_read
[function]
[call site]
04904
ed_swap_4p
[function]
[call site]
04905
bgzf_read
[function]
[call site]
04906
ed_swap_4p
[function]
[call site]
04907
kh_put_bin
[function]
[call site]
04908
bgzf_read
[function]
[call site]
04909
ed_swap_8p
[function]
[call site]
04910
bgzf_read
[function]
[call site]
04911
ed_swap_4p
[function]
[call site]
04912
hts_malloc_p
[function]
[call site]
04913
bgzf_read
[function]
[call site]
04914
swap_bins
[function]
[call site]
04915
ed_swap_8p
[function]
[call site]
04916
ed_swap_8p
[function]
[call site]
04917
bgzf_read
[function]
[call site]
04918
ed_swap_4p
[function]
[call site]
04919
hts_malloc_p
[function]
[call site]
04920
bgzf_read
[function]
[call site]
04921
ed_swap_8p
[function]
[call site]
04922
update_loff
[function]
[call site]
04923
hts_bin_bot
[function]
[call site]
04924
hts_bin_level
[function]
[call site]
04925
bgzf_read
[function]
[call site]
04926
ed_swap_8p
[function]
[call site]
04927
memcmp
[call site]
04928
bgzf_read
[function]
[call site]
04929
le_to_u32
[function]
[call site]
04930
hts_idx_init
[function]
[call site]
04931
le_to_u32
[function]
[call site]
04932
hts_malloc_ps
[function]
[call site]
04933
bgzf_read
[function]
[call site]
04934
idx_read_core
[function]
[call site]
04935
memcmp
[call site]
04936
bgzf_read
[function]
[call site]
04937
ed_swap_4p
[function]
[call site]
04938
hts_idx_init
[function]
[call site]
04939
idx_read_core
[function]
[call site]
04940
__errno_location
[call site]
04941
bgzf_close
[function]
[call site]
04942
bgzf_close
[function]
[call site]
04943
hts_idx_destroy
[function]
[call site]
04944
__errno_location
[call site]
04945
strerror
[call site]
04946
hts_log
[function]
[call site]
04947
hts_idx_check_local
[function]
[call site]
04948
hisremote
[function]
[call site]
04949
strlen
[call site]
04950
strncmp
[call site]
04951
strncmp
[call site]
04952
hts_log
[function]
[call site]
04953
strlen
[call site]
04954
calloc
[call site]
04955
strcpy
[call site]
04956
stat
[call site]
04957
strcpy
[call site]
04958
stat
[call site]
04959
strcpy
[call site]
04960
stat
[call site]
04961
strcpy
[call site]
04962
stat
[call site]
04963
strcpy
[call site]
04964
stat
[call site]
04965
strcpy
[call site]
04966
stat
[call site]
04967
strcpy
[call site]
04968
stat
[call site]
04969
strcpy
[call site]
04970
stat
[call site]
04971
strcpy
[call site]
04972
strcmp
[call site]
04973
strcmp
[call site]
04974
strcpy
[call site]
04975
stat
[call site]
04976
strcpy
[call site]
04977
stat
[call site]
04978
hisremote
[function]
[call site]
04979
idx_filename
[function]
[call site]
04980
haddextension
[function]
[call site]
04981
find_scheme_handler
[function]
[call site]
04982
strncmp
[call site]
04983
strcspn
[call site]
04984
strchr
[call site]
04985
strip_extension
[function]
[call site]
04986
kputsn
[function]
[call site]
04987
kputs
[function]
[call site]
04988
kputs
[function]
[call site]
04989
idx_test_and_fetch
[function]
[call site]
04990
haddextension
[function]
[call site]
04991
idx_test_and_fetch
[function]
[call site]
04992
idx_filename
[function]
[call site]
04993
idx_filename
[function]
[call site]
04994
idx_filename
[function]
[call site]
04995
idx_filename
[function]
[call site]
04996
idx_filename
[function]
[call site]
04997
hts_log
[function]
[call site]
04998
hts_idx_load3
[function]
[call site]
04999
idx_read
[function]
[call site]
05000
hts_idx_get_meta
[function]
[call site]
05001
le_to_i32
[function]
[call site]
05002
le_to_i32
[function]
[call site]
05003
le_to_i32
[function]
[call site]
05004
le_to_i32
[function]
[call site]
05005
le_to_i32
[function]
[call site]
05006
le_to_i32
[function]
[call site]
05007
le_to_u32
[function]
[call site]
05008
get_tid
[function]
[call site]
05009
kh_init_s2i
[function]
[call site]
05010
kh_put_s2i
[function]
[call site]
05011
strdup
[call site]
05012
kh_del_s2i
[function]
[call site]
05013
kh_get_s2i
[function]
[call site]
05014
__errno_location
[call site]
05015
strerror
[call site]
05016
hts_log
[function]
[call site]
05017
strlen
[call site]
05018
hts_log
[function]
[call site]
05019
tbx_destroy
[function]
[call site]
05020
hts_idx_destroy
[function]
[call site]
05021
kh_destroy_s2i
[function]
[call site]
05022
tbx_seqnames
[function]
[call site]
05023
calloc
[call site]
05024
calloc
[call site]
05025
__assert_fail
[call site]
05026
__assert_fail
[call site]
05027
bcf_hdr_get_hrec
[function]
[call site]
05028
add_missing_contig_hrec
[function]
[call site]
05029
calloc
[call site]
05030
strdup
[call site]
05031
bcf_hrec_add_key
[function]
[call site]
05032
strlen
[call site]
05033
bcf_hrec_set_val
[function]
[call site]
05034
bcf_hdr_add_hrec
[function]
[call site]
05035
__errno_location
[call site]
05036
__errno_location
[call site]
05037
strerror
[call site]
05038
hts_log
[function]
[call site]
05039
bcf_hrec_destroy
[function]
[call site]
05040
__errno_location
[call site]
05041
bcf_hdr_sync
[function]
[call site]
05042
tbx_destroy
[function]
[call site]
05043
tbx_destroy
[function]
[call site]
05044
bcf_hdr_destroy
[function]
[call site]
05045
get_hdr_aux
[function]
[call site]
05046
kh_destroy_hdict
[function]
[call site]
05047
kh_destroy_vdict
[function]
[call site]
05048
bcf_hrec_destroy
[function]
[call site]
05049
hts_log
[function]
[call site]
05050
__assert_fail
[call site]
05051
bcf_hdr_init
[function]
[call site]
05052
hts_log
[function]
[call site]
05053
bgzf_read
[function]
[call site]
05054
hts_log
[function]
[call site]
05055
bcf_hdr_destroy
[function]
[call site]
05056
strncmp
[call site]
05057
strncmp
[call site]
05058
hts_log
[function]
[call site]
05059
hts_log
[function]
[call site]
05060
bcf_hdr_destroy
[function]
[call site]
05061
bgzf_read
[function]
[call site]
05062
__errno_location
[call site]
05063
__errno_location
[call site]
05064
bgzf_read
[function]
[call site]
05065
bcf_hdr_parse
[function]
[call site]
05066
bcf_hdr_incr_ref
[function]
[call site]
05067
get_hdr_aux
[function]
[call site]
05068
bgzf_set_private_data
[function]
[call site]
05069
__assert_fail
[call site]
05070
hdr_bgzf_private_data_cleanup
[function]
[call site]
05071
bcf_hdr_decr_ref
[function]
[call site]
05072
get_hdr_aux
[function]
[call site]
05073
bcf_hdr_destroy
[function]
[call site]
05074
hts_log
[function]
[call site]
05075
bcf_hdr_destroy
[function]
[call site]
05076
hts_close_or_abort
[function]
[call site]
05077
hts_close
[function]
[call site]
05078
bcf_hdr_write
[function]
[call site]
05079
__errno_location
[call site]
05080
bcf_hdr_sync
[function]
[call site]
05081
vcf_hdr_write
[function]
[call site]
05082
bcf_hdr_format
[function]
[call site]
05083
_bcf_hrec_format
[function]
[call site]
05084
ksprintf
[function]
[call site]
05085
strcmp
[call site]
05086
kputc
[function]
[call site]
05087
ksprintf
[function]
[call site]
05088
ksprintf
[function]
[call site]
05089
ksprintf
[function]
[call site]
05090
ksprintf
[function]
[call site]
05091
ksprintf
[function]
[call site]
05092
ksprintf
[function]
[call site]
05093
ksprintf
[function]
[call site]
05094
bgzf_write
[function]
[call site]
05095
bgzf_flush
[function]
[call site]
05096
hwrite
[function]
[call site]
05097
bcf_hdr_format
[function]
[call site]
05098
kputc
[function]
[call site]
05099
bgzf_write
[function]
[call site]
05100
u32_to_le
[function]
[call site]
05101
bgzf_write
[function]
[call site]
05102
bgzf_write
[function]
[call site]
05103
bgzf_flush
[function]
[call site]
05104
bcf_hdr_incr_ref
[function]
[call site]
05105
bgzf_set_private_data
[function]
[call site]
05106
hdr_bgzf_private_data_cleanup
[function]
[call site]
05107
bcf_init
[function]
[call site]
05108
calloc
[call site]
05109
bcf_read
[function]
[call site]
05110
vcf_read
[function]
[call site]
05111
hts_getline
[function]
[call site]
05112
vcf_parse
[function]
[call site]
05113
ks_resize
[function]
[call site]
05114
bcf_clear
[function]
[call site]
05115
bcf_float_set
[function]
[call site]
05116
kstrtok
[function]
[call site]
05117
kh_get_vdict
[function]
[call site]
05118
hts_log
[function]
[call site]
05119
hts_log
[function]
[call site]
05120
fix_chromosome
[function]
[call site]
05121
ksprintf
[function]
[call site]
05122
bcf_hdr_parse_line
[function]
[call site]
05123
bcf_hdr_add_hrec
[function]
[call site]
05124
bcf_hrec_destroy
[function]
[call site]
05125
bcf_hdr_sync
[function]
[call site]
05126
kh_get_vdict
[function]
[call site]
05127
hts_log
[function]
[call site]
05128
kstrtok
[function]
[call site]
05129
hts_str2uint
[function]
[call site]
05130
hts_log
[function]
[call site]
05131
hts_log
[function]
[call site]
05132
kstrtok
[function]
[call site]
05133
memcmp
[call site]
05134
bcf_enc_vchar
[function]
[call site]
05135
bcf_enc_size
[function]
[call site]
05136
ks_resize
[function]
[call site]
05137
ks_resize
[function]
[call site]
05138
i16_to_le
[function]
[call site]
05139
i32_to_le
[function]
[call site]
05140
kputsn
[function]
[call site]
05141
bcf_enc_size
[function]
[call site]
05142
kstrtok
[function]
[call site]
05143
bcf_enc_vchar
[function]
[call site]
05144
kstrtok
[function]
[call site]
05145
memcmp
[call site]
05146
bcf_seqname_safe
[function]
[call site]
05147
bcf_seqname
[function]
[call site]
05148
bcf_hdr_id2name
[function]
[call site]
05149
hts_log
[function]
[call site]
05150
bcf_enc_vchar
[function]
[call site]
05151
kstrtok
[function]
[call site]
05152
memcmp
[call site]
05153
atof
[call site]
05154
bcf_float_set
[function]
[call site]
05155
kstrtok
[function]
[call site]
05156
memcmp
[call site]
05157
vcf_parse_filter
[function]
[call site]
05158
hts_malloc_p
[function]
[call site]
05159
bcf_seqname_safe
[function]
[call site]
05160
hts_log
[function]
[call site]
05161
kstrtok
[function]
[call site]
05162
kh_get_vdict
[function]
[call site]
05163
bcf_seqname_safe
[function]
[call site]
05164
hts_log
[function]
[call site]
05165
hts_log
[function]
[call site]
05166
ksprintf
[function]
[call site]
05167
bcf_hdr_parse_line
[function]
[call site]
05168
bcf_hdr_add_hrec
[function]
[call site]
05169
bcf_hrec_destroy
[function]
[call site]
05170
bcf_hdr_sync
[function]
[call site]
05171
kh_get_vdict
[function]
[call site]
05172
bcf_seqname_safe
[function]
[call site]
05173
hts_log
[function]
[call site]
05174
bcf_enc_vint
[function]
[call site]
05175
bcf_enc_size
[function]
[call site]
05176
bcf_enc_int1
[function]
[call site]
05177
ks_resize
[function]
[call site]
05178
i16_to_le
[function]
[call site]
05179
i32_to_le
[function]
[call site]
05180
bcf_enc_size
[function]
[call site]
05181
ks_resize
[function]
[call site]
05182
bcf_enc_size
[function]
[call site]
05183
ks_resize
[function]
[call site]
05184
i16_to_le
[function]
[call site]
05185
bcf_enc_size
[function]
[call site]
05186
ks_resize
[function]
[call site]
05187
i32_to_le
[function]
[call site]
05188
bcf_enc_vint
[function]
[call site]
05189
kstrtok
[function]
[call site]
05190
memcmp
[call site]
05191
vcf_parse_info
[function]
[call site]
05192
bcf_seqname_safe
[function]
[call site]
05193
hts_log
[function]
[call site]
05194
kh_get_vdict
[function]
[call site]
05195
bcf_seqname_safe
[function]
[call site]
05196
hts_log
[function]
[call site]
05197
hts_log
[function]
[call site]
05198
ksprintf
[function]
[call site]
05199
bcf_hdr_parse_line
[function]
[call site]
05200
bcf_hdr_add_hrec
[function]
[call site]
05201
bcf_hrec_destroy
[function]
[call site]
05202
bcf_hdr_sync
[function]
[call site]
05203
kh_get_vdict
[function]
[call site]
05204
bcf_seqname_safe
[function]
[call site]
05205
hts_log
[function]
[call site]
05206
bcf_enc_int1
[function]
[call site]
05207
bcf_enc_size
[function]
[call site]
05208
bcf_enc_vchar
[function]
[call site]
05209
hts_realloc_p
[function]
[call site]
05210
bcf_seqname_safe
[function]
[call site]
05211
hts_log
[function]
[call site]
05212
hts_str2int
[function]
[call site]
05213
bcf_seqname_safe
[function]
[call site]
05214
hts_log
[function]
[call site]
05215
bcf_enc_int1
[function]
[call site]
05216
bcf_enc_vint
[function]
[call site]
05217
memcmp
[call site]
05218
bcf_seqname_safe
[function]
[call site]
05219
hts_log
[function]
[call site]
05220
hts_str2dbl
[function]
[call site]
05221
bcf_float_set
[function]
[call site]
05222
bcf_enc_vfloat
[function]
[call site]
05223
__assert_fail
[call site]
05224
bcf_enc_size
[function]
[call site]
05225
serialize_float_array
[function]
[call site]
05226
ks_resize
[function]
[call site]
05227
float_to_le
[function]
[call site]
05228
kstrtok
[function]
[call site]
05229
vcf_parse_format
[function]
[call site]
05230
vcf_parse_format_empty1
[function]
[call site]
05231
bcf_seqname_safe
[function]
[call site]
05232
hts_log
[function]
[call site]
05233
vcf_parse_format_dict2
[function]
[call site]
05234
kstrtok
[function]
[call site]
05235
bcf_seqname_safe
[function]
[call site]
05236
hts_log
[function]
[call site]
05237
kh_get_vdict
[function]
[call site]
05238
bcf_seqname_safe
[function]
[call site]
05239
hts_log
[function]
[call site]
05240
bcf_seqname_safe
[function]
[call site]
05241
hts_log
[function]
[call site]
05242
hts_log
[function]
[call site]
05243
ksprintf
[function]
[call site]
05244
bcf_hdr_parse_line
[function]
[call site]
05245
bcf_hdr_add_hrec
[function]
[call site]
05246
bcf_hrec_destroy
[function]
[call site]
05247
bcf_hdr_sync
[function]
[call site]
05248
kh_get_vdict
[function]
[call site]
05249
bcf_seqname_safe
[function]
[call site]
05250
hts_log
[function]
[call site]
05251
vcf_parse_format_max3
[function]
[call site]
05252
hts_log
[function]
[call site]
05253
vcf_parse_format_alloc4
[function]
[call site]
05254
bcf_seqname_safe
[function]
[call site]
05255
hts_log
[function]
[call site]
05256
align_mem
[function]
[call site]
05257
kputsn
[function]
[call site]
05258
bcf_seqname_safe
[function]
[call site]
05259
hts_log
[function]
[call site]
05260
bcf_seqname_safe
[function]
[call site]
05261
hts_log
[function]
[call site]
05262
ks_resize
[function]
[call site]
05263
bcf_seqname_safe
[function]
[call site]
05264
hts_log
[function]
[call site]
05265
bcf_seqname_safe
[function]
[call site]
05266
hts_log
[function]
[call site]
05267
vcf_parse_format_fill5
[function]
[call site]
05268
bcf_get_version
[function]
[call site]
05269
bcf_seqname_safe
[function]
[call site]
05270
hts_log
[function]
[call site]
05271
hts_str2uint
[function]
[call site]
05272
bcf_seqname_safe
[function]
[call site]
05273
hts_log
[function]
[call site]
05274
bcf_seqname_safe
[function]
[call site]
05275
hts_log
[function]
[call site]
05276
hts_str2int
[function]
[call site]
05277
bcf_seqname_safe
[function]
[call site]
05278
hts_log
[function]
[call site]
05279
isdigit_c
[function]
[call site]
05280
bcf_float_set
[function]
[call site]
05281
hts_str2dbl
[function]
[call site]
05282
bcf_seqname
[function]
[call site]
05283
hts_log
[function]
[call site]
05284
bcf_float_set
[function]
[call site]
05285
bcf_float_set
[function]
[call site]
05286
bcf_seqname_safe
[function]
[call site]
05287
hts_log
[function]
[call site]
05288
hts_strprint
[function]
[call site]
05289
bcf_seqname_safe
[function]
[call site]
05290
hts_log
[function]
[call site]
05291
bcf_float_set
[function]
[call site]
05292
bcf_float_set
[function]
[call site]
05293
vcf_parse_format_gt6
[function]
[call site]
05294
bcf_enc_int1
[function]
[call site]
05295
bcf_enc_size
[function]
[call site]
05296
kputsn
[function]
[call site]
05297
bcf_enc_vint
[function]
[call site]
05298
bcf_enc_size
[function]
[call site]
05299
serialize_float_array
[function]
[call site]
05300
bcf_seqname_safe
[function]
[call site]
05301
hts_log
[function]
[call site]
05302
vcf_parse_format_check7
[function]
[call site]
05303
bcf_seqname_safe
[function]
[call site]
05304
hts_log
[function]
[call site]
05305
bcf_seqname_safe
[function]
[call site]
05306
hts_log
[function]
[call site]
05307
get_rlen
[function]
[call site]
05308
bcf_hdr_id2int
[function]
[call site]
05309
svlen_on_ref_for_vcf_alt
[function]
[call site]
05310
strlen
[call site]
05311
memcmp
[call site]
05312
memcmp
[call site]
05313
memcmp
[call site]
05314
memcmp
[call site]
05315
strcmp
[call site]
05316
strcmp
[call site]
05317
strlen
[call site]
05318
bcf_dec_size
[function]
[call site]
05319
bcf_dec_typed_int1
[function]
[call site]
05320
bcf_dec_int1
[function]
[call site]
05321
le_to_i8
[function]
[call site]
05322
le_to_i16
[function]
[call site]
05323
le_to_i32
[function]
[call site]
05324
le_to_i64
[function]
[call site]
05325
le_to_u64
[function]
[call site]
05326
bcf_dec_size
[function]
[call site]
05327
svlen_on_ref_for_vcf_alt
[function]
[call site]
05328
strncmp
[call site]
05329
strncmp
[call site]
05330
bcf_dec_size
[function]
[call site]
05331
bcf_hdr_id2int
[function]
[call site]
05332
bcf_get_info
[function]
[call site]
05333
bcf_hdr_id2int
[function]
[call site]
05334
bcf_get_info_id
[function]
[call site]
05335
bcf_unpack
[function]
[call site]
05336
bcf_fmt_sized_array
[function]
[call site]
05337
bcf_dec_size
[function]
[call site]
05338
bcf_fmt_array
[function]
[call site]
05339
kputc_
[function]
[call site]
05340
memchr
[call site]
05341
kputsn
[function]
[call site]
05342
kputc
[function]
[call site]
05343
le_to_i8
[function]
[call site]
05344
kputc_
[function]
[call site]
05345
kputc
[function]
[call site]
05346
kputw
[function]
[call site]
05347
le_to_i16
[function]
[call site]
05348
kputc_
[function]
[call site]
05349
kputc
[function]
[call site]
05350
kputw
[function]
[call site]
05351
le_to_i32
[function]
[call site]
05352
kputc_
[function]
[call site]
05353
kputc
[function]
[call site]
05354
kputw
[function]
[call site]
05355
le_to_u32
[function]
[call site]
05356
kputc_
[function]
[call site]
05357
kputc
[function]
[call site]
05358
le_to_float
[function]
[call site]
05359
kputd
[function]
[call site]
05360
hts_log
[function]
[call site]
05361
exit
[call site]
05362
kputc_
[function]
[call site]
05363
hts_realloc_or_die
[function]
[call site]
05364
bcf_fmt_sized_array
[function]
[call site]
05365
kputc_
[function]
[call site]
05366
bcf_dec_size
[function]
[call site]
05367
hts_realloc_or_die
[function]
[call site]
05368
bcf_dec_int1
[function]
[call site]
05369
hts_realloc_or_die
[function]
[call site]
05370
bcf_unpack_info_core1
[function]
[call site]
05371
bcf_dec_typed_int1
[function]
[call site]
05372
bcf_dec_size
[function]
[call site]
05373
le_to_i16
[function]
[call site]
05374
le_to_i32
[function]
[call site]
05375
le_to_float
[function]
[call site]
05376
le_to_i64
[function]
[call site]
05377
hts_realloc_or_die
[function]
[call site]
05378
bcf_unpack_fmt_core1
[function]
[call site]
05379
bcf_dec_typed_int1
[function]
[call site]
05380
bcf_dec_size
[function]
[call site]
05381
bcf_get_info
[function]
[call site]
05382
bcf_dec_typed_int1
[function]
[call site]
05383
bcf_unpack_info_core1
[function]
[call site]
05384
bcf_unpack_info_core1
[function]
[call site]
05385
bcf_dec_size
[function]
[call site]
05386
bcf_hdr_id2int
[function]
[call site]
05387
bcf_get_fmt
[function]
[call site]
05388
bcf_hdr_id2int
[function]
[call site]
05389
bcf_get_fmt_id
[function]
[call site]
05390
bcf_unpack
[function]
[call site]
05391
bcf_dec_typed_int1
[function]
[call site]
05392
bcf_unpack_fmt_core1
[function]
[call site]
05393
bcf_dec_size
[function]
[call site]
05394
le_to_i8
[function]
[call site]
05395
le_to_i16
[function]
[call site]
05396
le_to_i32
[function]
[call site]
05397
le_to_i64
[function]
[call site]
05398
le_to_i8
[function]
[call site]
05399
le_to_i16
[function]
[call site]
05400
le_to_i32
[function]
[call site]
05401
le_to_i64
[function]
[call site]
05402
bgzf_get_private_data
[function]
[call site]
05403
__assert_fail
[call site]
05404
bcf_read1_core
[function]
[call site]
05405
bgzf_read
[function]
[call site]
05406
bcf_clear
[function]
[call site]
05407
le_to_u32
[function]
[call site]
05408
le_to_u32
[function]
[call site]
05409
ks_resize
[function]
[call site]
05410
ks_resize
[function]
[call site]
05411
le_to_i32
[function]
[call site]
05412
le_to_u32
[function]
[call site]
05413
le_to_i32
[function]
[call site]
05414
le_to_float
[function]
[call site]
05415
le_to_u16
[function]
[call site]
05416
le_to_u16
[function]
[call site]
05417
le_to_u32
[function]
[call site]
05418
bgzf_read
[function]
[call site]
05419
bgzf_read
[function]
[call site]
05420
bcf_record_check
[function]
[call site]
05421
bcf_get_version
[function]
[call site]
05422
bcf_hdr_id2int
[function]
[call site]
05423
hts_log
[function]
[call site]
05424
bcf_dec_size_safe
[function]
[call site]
05425
bcf_dec_typed_int1_safe
[function]
[call site]
05426
le_to_i16
[function]
[call site]
05427
le_to_i32
[function]
[call site]
05428
bcf_seqname_safe
[function]
[call site]
05429
get_type_name
[function]
[call site]
05430
hts_log
[function]
[call site]
05431
bcf_seqname_safe
[function]
[call site]
05432
hts_log
[function]
[call site]
05433
bcf_dec_size_safe
[function]
[call site]
05434
bcf_seqname_safe
[function]
[call site]
05435
get_type_name
[function]
[call site]
05436
hts_log
[function]
[call site]
05437
bcf_dec_size_safe
[function]
[call site]
05438
bcf_seqname_safe
[function]
[call site]
05439
get_type_name
[function]
[call site]
05440
hts_log
[function]
[call site]
05441
bcf_dec_int1
[function]
[call site]
05442
bcf_seqname_safe
[function]
[call site]
05443
hts_log
[function]
[call site]
05444
bcf_dec_typed_int1_safe
[function]
[call site]
05445
bcf_seqname_safe
[function]
[call site]
05446
hts_log
[function]
[call site]
05447
bcf_dec_size_safe
[function]
[call site]
05448
bcf_seqname_safe
[function]
[call site]
05449
get_type_name
[function]
[call site]
05450
hts_log
[function]
[call site]
05451
bcf_dec_typed_int1_safe
[function]
[call site]
05452
bcf_record_check_err
[function]
[call site]
05453
bcf_seqname_safe
[function]
[call site]
05454
hts_log
[function]
[call site]
05455
bcf_dec_size_safe
[function]
[call site]
05456
bcf_record_check_err
[function]
[call site]
05457
updatephasing
[function]
[call site]
05458
bcf_seqname_safe
[function]
[call site]
05459
hts_log
[function]
[call site]
05460
get_rlen
[function]
[call site]
05461
bcf_seqname_safe
[function]
[call site]
05462
hts_log
[function]
[call site]
05463
bcf_seqname_safe
[function]
[call site]
05464
hts_log
[function]
[call site]
05465
bcf_subset_format
[function]
[call site]
05466
hts_realloc_or_die
[function]
[call site]
05467
bcf_unpack_fmt_core1
[function]
[call site]
05468
bcf_write
[function]
[call site]
05469
bcf_hdr_sync
[function]
[call site]
05470
bcf_seqname_safe
[function]
[call site]
05471
vcf_write
[function]
[call site]
05472
vcf_format
[function]
[call site]
05473
bcf_seqname
[function]
[call site]
05474
hts_log
[function]
[call site]
05475
__errno_location
[call site]
05476
bcf_unpack
[function]
[call site]
05477
get_hdr_aux
[function]
[call site]
05478
calloc
[call site]
05479
kputs
[function]
[call site]
05480
kputc_
[function]
[call site]
05481
kputll
[function]
[call site]
05482
kputc_
[function]
[call site]
05483
kputs
[function]
[call site]
05484
kputc_
[function]
[call site]
05485
kputs
[function]
[call site]
05486
kputc_
[function]
[call site]
05487
kputc_
[function]
[call site]
05488
kputc_
[function]
[call site]
05489
kputs
[function]
[call site]
05490
kputc_
[function]
[call site]
05491
kputc_
[function]
[call site]
05492
bcf_float_is_missing
[function]
[call site]
05493
kputc_
[function]
[call site]
05494
kputd
[function]
[call site]
05495
kputc_
[function]
[call site]
05496
bcf_seqname_safe
[function]
[call site]
05497
hts_log
[function]
[call site]
05498
__errno_location
[call site]
05499
kputc_
[function]
[call site]
05500
strlen
[call site]
05501
kputsn
[function]
[call site]
05502
kputc_
[function]
[call site]
05503
kputc_
[function]
[call site]
05504
bcf_dec_typed_int1
[function]
[call site]
05505
bcf_dec_size
[function]
[call site]
05506
bcf_seqname_safe
[function]
[call site]
05507
hts_log
[function]
[call site]
05508
__errno_location
[call site]
05509
strlen
[call site]
05510
ks_resize
[function]
[call site]
05511
bcf_fmt_array
[function]
[call site]
05512
bcf_float_is_missing
[function]
[call site]
05513
kputc_
[function]
[call site]
05514
kputd
[function]
[call site]
05515
kputc_
[function]
[call site]
05516
kputc_
[function]
[call site]
05517
kputw
[function]
[call site]
05518
kputc_
[function]
[call site]
05519
kputll
[function]
[call site]
05520
bcf_seqname_safe
[function]
[call site]
05521
hts_log
[function]
[call site]
05522
__errno_location
[call site]
05523
kputc_
[function]
[call site]
05524
kputc_
[function]
[call site]
05525
hts_malloc_p
[function]
[call site]
05526
bcf_dec_typed_int1
[function]
[call site]
05527
bcf_dec_size
[function]
[call site]
05528
kputc_
[function]
[call site]
05529
bcf_seqname_safe
[function]
[call site]
05530
hts_log
[function]
[call site]
05531
__errno_location
[call site]
05532
strlen
[call site]
05533
kputsn
[function]
[call site]
05534
kputsn
[function]
[call site]
05535
kputc_
[function]
[call site]
05536
kputc_
[function]
[call site]
05537
bcf_format_gt_v2
[function]
[call site]
05538
le_to_i8
[function]
[call site]
05539
kputc
[function]
[call site]
05540
kputw
[function]
[call site]
05541
le_to_i16
[function]
[call site]
05542
kputc
[function]
[call site]
05543
kputw
[function]
[call site]
05544
le_to_i32
[function]
[call site]
05545
kputc
[function]
[call site]
05546
kputw
[function]
[call site]
05547
kputc
[function]
[call site]
05548
hts_log
[function]
[call site]
05549
get_hdr_aux
[function]
[call site]
05550
kinsert_char
[function]
[call site]
05551
ks_resize
[function]
[call site]
05552
kinsert_char
[function]
[call site]
05553
kinsert_char
[function]
[call site]
05554
hts_log
[function]
[call site]
05555
__errno_location
[call site]
05556
bcf_fmt_array1
[function]
[call site]
05557
kputc_
[function]
[call site]
05558
kputc_
[function]
[call site]
05559
kputw
[function]
[call site]
05560
le_to_i16
[function]
[call site]
05561
kputc_
[function]
[call site]
05562
kputw
[function]
[call site]
05563
le_to_i32
[function]
[call site]
05564
kputc_
[function]
[call site]
05565
kputw
[function]
[call site]
05566
le_to_u32
[function]
[call site]
05567
kputc_
[function]
[call site]
05568
le_to_float
[function]
[call site]
05569
kputd
[function]
[call site]
05570
hts_log
[function]
[call site]
05571
bcf_fmt_array
[function]
[call site]
05572
kputc_
[function]
[call site]
05573
bcf_fmt_array1
[function]
[call site]
05574
bcf_fmt_array
[function]
[call site]
05575
kputc_
[function]
[call site]
05576
kputsn
[function]
[call site]
05577
kputc
[function]
[call site]
05578
bgzf_flush_try
[function]
[call site]
05579
hts_idx_amend_last
[function]
[call site]
05580
bgzf_write
[function]
[call site]
05581
hwrite
[function]
[call site]
05582
bcf_seqname_safe
[function]
[call site]
05583
hts_idx_tbi_name
[function]
[call site]
05584
strlen
[call site]
05585
hts_realloc_ps
[function]
[call site]
05586
strcpy
[call site]
05587
le_to_u32
[function]
[call site]
05588
u32_to_le
[function]
[call site]
05589
bgzf_idx_push
[function]
[call site]
05590
bcf_strerror
[function]
[call site]
05591
add_desc_to_buffer
[function]
[call site]
05592
add_desc_to_buffer
[function]
[call site]
05596
bcf_seqname_safe
[function]
[call site]
05597
hts_log
[function]
[call site]
05598
bcf1_sync
[function]
[call site]
05599
bcf1_sync_id
[function]
[call site]
05600
strcmp
[call site]
05601
strlen
[call site]
05602
bcf_enc_vchar
[function]
[call site]
05603
bcf_enc_size
[function]
[call site]
05604
bcf1_sync_alleles
[function]
[call site]
05605
bcf1_sync_filter
[function]
[call site]
05609
bcf_enc_vint
[function]
[call site]
05610
bcf_enc_vint
[function]
[call site]
05611
bcf1_sync_info
[function]
[call site]
05612
kputsn_
[function]
[call site]
05613
bcf_unpack
[function]
[call site]
05614
bcf1_sync_id
[function]
[call site]
05615
kputsn_
[function]
[call site]
05616
bcf1_sync_alleles
[function]
[call site]
05617
kputsn_
[function]
[call site]
05618
strlen
[call site]
05619
bcf1_sync_filter
[function]
[call site]
05620
kputsn_
[function]
[call site]
05621
bcf_enc_vint
[function]
[call site]
05622
bcf1_sync_info
[function]
[call site]
05623
kputsn_
[function]
[call site]
05624
kputsn_
[function]
[call site]
05625
bcf_seqname_safe
[function]
[call site]
05626
hts_log
[function]
[call site]
05627
u32_to_le
[function]
[call site]
05628
u32_to_le
[function]
[call site]
05629
i32_to_le
[function]
[call site]
05630
u32_to_le
[function]
[call site]
05631
u32_to_le
[function]
[call site]
05632
float_to_le
[function]
[call site]
05633
u16_to_le
[function]
[call site]
05634
u16_to_le
[function]
[call site]
05635
u32_to_le
[function]
[call site]
05636
bgzf_write
[function]
[call site]
05637
bgzf_write
[function]
[call site]
05638
bgzf_write
[function]
[call site]
05639
bgzf_idx_push
[function]
[call site]
05640
bcf_destroy
[function]
[call site]
05641
bcf_empty
[function]
[call site]
05642
bcf_clear
[function]
[call site]
05643
bcf_hdr_destroy
[function]
[call site]
05644
hts_close_or_abort
[function]
[call site]
05645
hts_close
[function]
[call site]
05646
view_vcf
[function]
[call site]
05647