The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 5689 | 0 | EP | call site: 00000 | view_sam |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
__errno_location
[call site]
00024
realloc
[call site]
00025
__ac_FNV1a_hash_string
[function]
[call site]
00026
strcmp
[call site]
00027
__errno_location
[call site]
00028
strerror
[call site]
00029
hts_log
[function]
[call site]
00030
priority
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
hfile_add_scheme_handler
[function]
[call site]
00033
init_add_plugin
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hts_log
[function]
[call site]
00037
hfile_plugin_init_mem
[function]
[call site]
00038
hfile_add_scheme_handler
[function]
[call site]
00039
init_add_plugin
[function]
[call site]
00040
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00041
hfile_add_scheme_handler
[function]
[call site]
00042
init_add_plugin
[function]
[call site]
00043
hfile_plugin_init_libcurl
[function]
[call site]
00044
hts_version
[function]
[call site]
00045
curl_global_init
[call site]
00046
easy_errno
[function]
[call site]
00047
curl_easy_getinfo
[call site]
00048
curl_easy_getinfo
[call site]
00049
http_status_errno
[function]
[call site]
00050
curl_easy_strerror
[call site]
00051
hts_log
[function]
[call site]
00052
__errno_location
[call site]
00053
curl_share_init
[call site]
00054
curl_global_cleanup
[call site]
00055
__errno_location
[call site]
00056
curl_share_setopt
[call site]
00057
share_lock
[function]
[call site]
00058
pthread_mutex_lock
[call site]
00059
curl_share_setopt
[call site]
00060
share_unlock
[function]
[call site]
00061
pthread_mutex_unlock
[call site]
00062
curl_share_setopt
[call site]
00063
curl_share_cleanup
[call site]
00064
curl_global_cleanup
[call site]
00065
__errno_location
[call site]
00066
getenv
[call site]
00067
strdup
[call site]
00068
kh_init_auth_map
[function]
[call site]
00069
calloc
[call site]
00070
__errno_location
[call site]
00071
kh_destroy_auth_map
[function]
[call site]
00072
curl_share_cleanup
[call site]
00073
curl_global_cleanup
[call site]
00074
__errno_location
[call site]
00075
getenv
[call site]
00076
strcmp
[call site]
00077
getenv
[call site]
00078
atoi
[call site]
00079
getenv
[call site]
00080
atol
[call site]
00081
getenv
[call site]
00082
atol
[call site]
00083
getenv
[call site]
00084
atol
[call site]
00085
getenv
[call site]
00086
atol
[call site]
00087
curl_version_info
[call site]
00088
ksprintf
[function]
[call site]
00089
kvsprintf
[function]
[call site]
00090
kputd
[function]
[call site]
00091
kputsn
[function]
[call site]
00092
__errno_location
[call site]
00093
ks_resize
[function]
[call site]
00094
realloc
[call site]
00095
kputsn
[function]
[call site]
00096
kputc
[function]
[call site]
00097
ks_resize
[function]
[call site]
00098
ks_resize
[function]
[call site]
00099
snprintf
[call site]
00100
kputsn
[function]
[call site]
00101
vsnprintf
[call site]
00102
ks_resize
[function]
[call site]
00103
vsnprintf
[call site]
00104
hfile_add_scheme_handler
[function]
[call site]
00105
init_add_plugin
[function]
[call site]
00106
hfile_plugin_init_gcs
[function]
[call site]
00107
hfile_add_scheme_handler
[function]
[call site]
00108
hfile_add_scheme_handler
[function]
[call site]
00109
hfile_add_scheme_handler
[function]
[call site]
00110
init_add_plugin
[function]
[call site]
00111
hfile_plugin_init_s3
[function]
[call site]
00112
hts_version
[function]
[call site]
00113
curl_global_init
[call site]
00114
__errno_location
[call site]
00115
curl_share_init
[call site]
00116
curl_global_cleanup
[call site]
00117
__errno_location
[call site]
00118
curl_share_setopt
[call site]
00119
share_lock
[function]
[call site]
00120
pthread_mutex_lock
[call site]
00121
curl_share_setopt
[call site]
00122
share_unlock
[function]
[call site]
00123
pthread_mutex_unlock
[call site]
00124
curl_share_setopt
[call site]
00125
curl_share_cleanup
[call site]
00126
curl_global_cleanup
[call site]
00127
__errno_location
[call site]
00128
curl_version_info
[call site]
00129
ksprintf
[function]
[call site]
00130
hfile_add_scheme_handler
[function]
[call site]
00131
hfile_add_scheme_handler
[function]
[call site]
00132
hfile_add_scheme_handler
[function]
[call site]
00133
atexit
[call site]
00134
hfile_exit
[function]
[call site]
00135
hfile_shutdown
[function]
[call site]
00136
pthread_mutex_lock
[call site]
00137
kh_destroy_scheme_string
[function]
[call site]
00138
pthread_mutex_unlock
[call site]
00139
pthread_mutex_destroy
[call site]
00140
pthread_mutex_unlock
[call site]
00141
pthread_mutex_unlock
[call site]
00142
kh_get_scheme_string
[function]
[call site]
00143
strchr
[call site]
00144
strcmp
[call site]
00145
hopen_fd_stdinout
[function]
[call site]
00146
strchr
[call site]
00147
snprintf
[call site]
00148
hdopen
[function]
[call site]
00149
blksize
[function]
[call site]
00150
fstat
[call site]
00151
hfile_init
[function]
[call site]
00152
strchr
[call site]
00153
posix_memalign
[call site]
00154
strchr
[call site]
00155
hfile_destroy
[function]
[call site]
00156
__errno_location
[call site]
00157
__errno_location
[call site]
00158
strchr
[call site]
00159
strchr
[call site]
00160
hopen_fd
[function]
[call site]
00161
hfile_oflags
[function]
[call site]
00162
open
[call site]
00163
blksize
[function]
[call site]
00164
hfile_init
[function]
[call site]
00165
__errno_location
[call site]
00166
close
[call site]
00167
hfile_destroy
[function]
[call site]
00168
hts_hopen
[function]
[call site]
00169
calloc
[call site]
00170
strdup
[call site]
00171
ed_is_big
[function]
[call site]
00172
strchr
[call site]
00173
strncpy
[call site]
00174
strncpy
[call site]
00175
strchr
[call site]
00176
hts_detect_format2
[function]
[call site]
00177
hpeek
[function]
[call site]
00178
refill_buffer
[function]
[call site]
00179
__errno_location
[call site]
00180
memcmp
[call site]
00181
memcmp
[call site]
00182
decompress_peek_gz
[function]
[call site]
00183
hpeek
[function]
[call site]
00184
inflateInit2_
[call site]
00185
inflate
[call site]
00186
inflateReset
[call site]
00187
inflateEnd
[call site]
00188
memcmp
[call site]
00189
memcmp
[call site]
00190
memcmp
[call site]
00191
memcmp
[call site]
00192
decompress_peek_xz
[function]
[call site]
00193
hpeek
[function]
[call site]
00194
lzma_easy_decoder_memusage
[call site]
00195
lzma_stream_decoder
[call site]
00196
lzma_code
[call site]
00197
lzma_end
[call site]
00198
lzma_end
[call site]
00199
memcmp
[call site]
00200
hpeek
[function]
[call site]
00201
strcmp
[call site]
00202
find_file_extension
[function]
[call site]
00203
strstr
[call site]
00204
strlen
[call site]
00205
tolower_c
[function]
[call site]
00206
memcmp
[call site]
00207
memcmp
[call site]
00208
memcmp
[call site]
00209
memcmp
[call site]
00210
memcmp
[call site]
00211
memcmp
[call site]
00212
memcmp
[call site]
00213
strcmp
[call site]
00214
memcmp
[call site]
00215
parse_version
[function]
[call site]
00216
isdigit_c
[function]
[call site]
00217
__ctype_b_loc
[call site]
00218
isdigit_c
[function]
[call site]
00219
memcmp
[call site]
00220
memcmp
[call site]
00221
memcmp
[call site]
00222
memcmp
[call site]
00223
parse_version
[function]
[call site]
00224
memcmp
[call site]
00225
cmp_nonblank
[function]
[call site]
00226
isspace_c
[function]
[call site]
00227
__ctype_b_loc
[call site]
00228
memcmp
[call site]
00229
is_fastaq
[function]
[call site]
00230
is_fastaq
[function]
[call site]
00234
parse_tabbed_text
[function]
[call site]
00235
isdigit_c
[function]
[call site]
00236
strchr
[call site]
00237
isdigit_c
[function]
[call site]
00238
colmatch
[function]
[call site]
00239
colmatch
[function]
[call site]
00240
strstr
[call site]
00241
colmatch
[function]
[call site]
00242
strstr
[call site]
00243
colmatch
[function]
[call site]
00244
colmatch
[function]
[call site]
00245
is_text_only
[function]
[call site]
00246
__errno_location
[call site]
00247
hopen_htsget_redirect
[function]
[call site]
00248
hfile_init
[function]
[call site]
00249
parse_ga4gh_redirect_json
[function]
[call site]
00250
hts_json_fnext
[function]
[call site]
00251
hgetc
[function]
[call site]
00252
hgetc2
[function]
[call site]
00253
refill_buffer
[function]
[call site]
00254
fscan_string
[function]
[call site]
00255
hgetc
[function]
[call site]
00256
hgetc
[function]
[call site]
00257
kputc
[function]
[call site]
00258
kputc
[function]
[call site]
00259
kputc
[function]
[call site]
00260
kputc
[function]
[call site]
00261
kputc
[function]
[call site]
00262
kputc
[function]
[call site]
00263
hgetc
[function]
[call site]
00264
dehex
[function]
[call site]
00265
hgetc
[function]
[call site]
00266
dehex
[function]
[call site]
00267
hgetc
[function]
[call site]
00268
dehex
[function]
[call site]
00269
hgetc
[function]
[call site]
00270
dehex
[function]
[call site]
00271
encode_utf8
[function]
[call site]
00272
kputsn
[function]
[call site]
00273
kputc
[function]
[call site]
00274
kputsn
[function]
[call site]
00275
kputc
[function]
[call site]
00276
hpeek
[function]
[call site]
00277
strchr
[call site]
00278
hgetc
[function]
[call site]
00279
kputc
[function]
[call site]
00280
token_type
[function]
[call site]
00281
hts_json_fnext
[function]
[call site]
00285
strcmp
[call site]
00286
parse_ga4gh_body_json
[function]
[call site]
00287
hts_json_fnext
[function]
[call site]
00288
hts_json_fnext
[function]
[call site]
00289
strcmp
[call site]
00290
hts_json_fnext
[function]
[call site]
00291
hts_json_fnext
[function]
[call site]
00292
hts_realloc_or_die
[function]
[call site]
00293
__errno_location
[call site]
00294
realloc
[call site]
00295
__errno_location
[call site]
00296
strerror
[call site]
00297
hts_log
[function]
[call site]
00298
exit
[call site]
00299
hts_json_fnext
[function]
[call site]
00300
strcmp
[call site]
00301
hts_json_fnext
[function]
[call site]
00302
ks_release
[function]
[call site]
00303
strcmp
[call site]
00304
hts_json_fnext
[function]
[call site]
00305
hts_json_fnext
[function]
[call site]
00306
hts_json_fnext
[function]
[call site]
00307
kputs
[function]
[call site]
00308
__errno_location
[call site]
00309
strlen
[call site]
00310
kputsn
[function]
[call site]
00311
kputs
[function]
[call site]
00312
hts_realloc_or_die
[function]
[call site]
00313
ks_release
[function]
[call site]
00314
hts_json_fskip_value
[function]
[call site]
00315
skip_value
[function]
[call site]
00316
fnext
[function]
[call site]
00317
hts_json_fnext
[function]
[call site]
00318
strcmp
[call site]
00319
hts_json_fnext
[function]
[call site]
00320
hts_log
[function]
[call site]
00321
hts_json_fskip_value
[function]
[call site]
00322
hts_json_fnext
[function]
[call site]
00323
free_all_parts
[function]
[call site]
00324
free_part
[function]
[call site]
00325
hfile_destroy
[function]
[call site]
00326
__errno_location
[call site]
00327
hclose_abruptly
[function]
[call site]
00328
__errno_location
[call site]
00329
hfile_destroy
[function]
[call site]
00330
__errno_location
[call site]
00331
hts_crypt4gh_redirect
[function]
[call site]
00332
strlen
[call site]
00333
snprintf
[call site]
00334
strchr
[call site]
00335
snprintf
[call site]
00336
hopen
[function]
[call site]
00337
hts_detect_format2
[function]
[call site]
00338
strchr
[call site]
00339
strchr
[call site]
00340
strchr
[call site]
00341
strchr
[call site]
00342
strchr
[call site]
00343
strchr
[call site]
00344
strchr
[call site]
00345
strchr
[call site]
00346
abort
[call site]
00347
format_category
[function]
[call site]
00348
__errno_location
[call site]
00349
bgzf_hopen
[function]
[call site]
00350
strchr
[call site]
00351
bgzf_read_init
[function]
[call site]
00352
hpeek
[function]
[call site]
00353
calloc
[call site]
00354
hts_malloc_p
[function]
[call site]
00355
hts_prod_sat2
[function]
[call site]
00356
hts_malloc
[function]
[call site]
00357
__errno_location
[call site]
00358
memcmp
[call site]
00359
memcmp
[call site]
00360
hts_log
[function]
[call site]
00361
razf_info
[function]
[call site]
00362
strcmp
[call site]
00363
hseek
[function]
[call site]
00364
writebuffer_is_nonempty
[function]
[call site]
00365
flush_buffer
[function]
[call site]
00366
__errno_location
[call site]
00367
htell
[function]
[call site]
00368
__errno_location
[call site]
00369
__errno_location
[call site]
00370
__errno_location
[call site]
00371
hread
[function]
[call site]
00372
hread2
[function]
[call site]
00373
__errno_location
[call site]
00374
refill_buffer
[function]
[call site]
00375
ed_is_big
[function]
[call site]
00376
ed_swap_8p
[function]
[call site]
00377
ed_swap_8
[function]
[call site]
00378
hts_log
[function]
[call site]
00379
hts_log
[function]
[call site]
00380
__errno_location
[call site]
00381
kh_init_bgzf_cache
[function]
[call site]
00382
calloc
[call site]
00383
strchr
[call site]
00384
bgzf_write_init
[function]
[call site]
00385
calloc
[call site]
00386
mode2level
[function]
[call site]
00387
strchr
[call site]
00388
hts_malloc_p
[function]
[call site]
00389
strchr
[call site]
00390
calloc
[call site]
00391
deflateInit2_
[call site]
00392
bgzf_zerr
[function]
[call site]
00393
hts_log
[function]
[call site]
00397
__errno_location
[call site]
00398
strerror
[call site]
00399
hts_log
[function]
[call site]
00400
__errno_location
[call site]
00401
ed_is_big
[function]
[call site]
00402
cram_dopen
[function]
[call site]
00403
calloc
[call site]
00404
cram_read_file_def
[function]
[call site]
00405
hread
[function]
[call site]
00406
memcmp
[call site]
00407
hts_log
[function]
[call site]
00408
cram_init_tables
[function]
[call site]
00409
cram_init_varint
[function]
[call site]
00410
cram_read_SAM_hdr
[function]
[call site]
00411
int32_decode
[function]
[call site]
00412
hread
[function]
[call site]
00413
hread
[function]
[call site]
00414
cram_read_container
[function]
[call site]
00415
int32_decode
[function]
[call site]
00416
crc32
[call site]
00417
calloc
[call site]
00418
__errno_location
[call site]
00419
cram_free_container
[function]
[call site]
00420
cram_free_compression_header
[function]
[call site]
00421
kh_destroy_map
[function]
[call site]
00422
cram_free_block
[function]
[call site]
00423
kh_destroy_m_s2i
[function]
[call site]
00424
string_pool_destroy
[function]
[call site]
00425
cram_free_block
[function]
[call site]
00426
cram_free_slice
[function]
[call site]
00427
free_bam_list
[function]
[call site]
00428
bam_destroy1
[function]
[call site]
00429
bam_get_mempolicy
[function]
[call site]
00430
bam_get_mempolicy
[function]
[call site]
00431
bam_get_mempolicy
[function]
[call site]
00432
cram_free_block
[function]
[call site]
00433
cram_free_block
[function]
[call site]
00434
cram_free_block
[function]
[call site]
00435
cram_free_slice_header
[function]
[call site]
00436
cram_free_block
[function]
[call site]
00437
cram_free_block
[function]
[call site]
00438
cram_free_block
[function]
[call site]
00439
cram_free_block
[function]
[call site]
00440
cram_free_block
[function]
[call site]
00441
cram_free_block
[function]
[call site]
00442
string_pool_destroy
[function]
[call site]
00443
kh_destroy_m_s2i
[function]
[call site]
00444
kh_destroy_m_s2i
[function]
[call site]
00445
cram_free_slice
[function]
[call site]
00446
cram_stats_free
[function]
[call site]
00447
kh_destroy_m_i2i
[function]
[call site]
00448
cram_free_block
[function]
[call site]
00449
cram_free_block
[function]
[call site]
00450
kh_destroy_m_tagmap
[function]
[call site]
00451
free_bam_list
[function]
[call site]
00452
hts_malloc_p
[function]
[call site]
00453
hts_prod_sat2
[function]
[call site]
00454
hts_malloc
[function]
[call site]
00455
__errno_location
[call site]
00456
cram_free_container
[function]
[call site]
00457
cram_free_container
[function]
[call site]
00458
int32_decode
[function]
[call site]
00459
cram_free_container
[function]
[call site]
00460
hts_log
[function]
[call site]
00461
cram_free_container
[function]
[call site]
00462
cram_free_container
[function]
[call site]
00463
cram_read_block
[function]
[call site]
00464
hgetc
[function]
[call site]
00465
hts_log
[function]
[call site]
00466
crc32
[call site]
00467
hgetc
[function]
[call site]
00468
crc32
[call site]
00469
hread
[function]
[call site]
00470
hread
[function]
[call site]
00471
int32_decode
[function]
[call site]
00472
cram_free_container
[function]
[call site]
00473
cram_uncompress_block
[function]
[call site]
00474
crc32
[call site]
00475
hts_log
[function]
[call site]
00476
__assert_fail
[call site]
00477
zlib_mem_inflate
[function]
[call site]
00478
inflateInit2_
[call site]
00479
hts_log
[function]
[call site]
00480
inflate
[call site]
00481
hts_log
[function]
[call site]
00482
inflateEnd
[call site]
00483
realloc
[call site]
00484
inflateEnd
[call site]
00485
inflateEnd
[call site]
00486
BZ2_bzBuffToBuffDecompress
[call site]
00487
lzma_mem_inflate
[function]
[call site]
00488
lzma_easy_decoder_memusage
[call site]
00489
lzma_stream_decoder
[call site]
00490
realloc
[call site]
00491
lzma_code
[call site]
00492
hts_log
[function]
[call site]
00493
lzma_code
[call site]
00494
hts_log
[function]
[call site]
00495
realloc
[call site]
00496
lzma_end
[call site]
00497
lzma_end
[call site]
00498
rans_uncompress
[function]
[call site]
00499
rans_uncompress_O1
[function]
[call site]
00500
htscodecs_tls_calloc
[function]
[call site]
00501
htscodecs_tls_alloc
[function]
[call site]
00502
pthread_once
[call site]
00503
htscodecs_tls_init
[function]
[call site]
00504
pthread_key_create
[call site]
00505
htscodecs_tls_free_all
[function]
[call site]
00506
fprintf
[call site]
00507
strerror
[call site]
00508
fprintf
[call site]
00509
pthread_getspecific
[call site]
00510
calloc
[call site]
00511
pthread_setspecific
[call site]
00512
fprintf
[call site]
00513
calloc
[call site]
00514
RansDecSymbolInit32
[function]
[call site]
00515
__assert_fail
[call site]
00516
__assert_fail
[call site]
00517
RansDecInit
[function]
[call site]
00518
RansDecInit
[function]
[call site]
00519
RansDecInit
[function]
[call site]
00520
RansDecInit
[function]
[call site]
00521
RansDecAdvanceStep
[function]
[call site]
00522
RansDecAdvanceStep
[function]
[call site]
00523
RansDecAdvanceStep
[function]
[call site]
00524
RansDecAdvanceStep
[function]
[call site]
00525
RansDecRenorm2
[function]
[call site]
00526
RansDecRenorm2
[function]
[call site]
00527
RansDecRenormSafe
[function]
[call site]
00528
RansDecRenormSafe
[function]
[call site]
00529
RansDecRenormSafe
[function]
[call site]
00530
RansDecRenormSafe
[function]
[call site]
00531
RansDecGet
[function]
[call site]
00532
RansDecRenormSafe
[function]
[call site]
00533
htscodecs_tls_free
[function]
[call site]
00534
rans_uncompress_O0
[function]
[call site]
00538
RansDecInit
[function]
[call site]
00539
RansDecInit
[function]
[call site]
00540
RansDecInit
[function]
[call site]
00541
RansDecInit
[function]
[call site]
00542
RansDecRenorm2
[function]
[call site]
00543
RansDecRenorm2
[function]
[call site]
00544
RansDecRenormSafe
[function]
[call site]
00545
RansDecRenormSafe
[function]
[call site]
00546
RansDecRenormSafe
[function]
[call site]
00547
RansDecRenormSafe
[function]
[call site]
00548
fqz_decompress
[function]
[call site]
00549
uncompress_block_fqz2f
[function]
[call site]
00550
var_get_u32
[function]
[call site]
00551
fqz_read_parameters
[function]
[call site]
00552
read_array
[function]
[call site]
00553
fqz_read_parameters1
[function]
[call site]
00554
read_array
[function]
[call site]
00555
read_array
[function]
[call site]
00556
read_array
[function]
[call site]
00557
fqz_free_parameters
[function]
[call site]
00558
fqz_create_models
[function]
[call site]
00559
htscodecs_tls_alloc
[function]
[call site]
00560
SIMPLE_MODEL256_init
[function]
[call site]
00561
SIMPLE_MODEL256_init
[function]
[call site]
00562
SIMPLE_MODEL2_init
[function]
[call site]
00563
SIMPLE_MODEL2_init
[function]
[call site]
00564
SIMPLE_MODEL256_init
[function]
[call site]
00565
RC_SetInput
[function]
[call site]
00566
RC_StartDecode
[function]
[call site]
00567
realloc
[call site]
00568
realloc
[call site]
00569
decompress_new_read
[function]
[call site]
00570
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00571
RC_GetFreq
[function]
[call site]
00572
RC_Decode
[function]
[call site]
00573
SIMPLE_MODEL256_normalize
[function]
[call site]
00574
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00575
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00576
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00577
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00578
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00579
SIMPLE_MODEL2_normalize
[function]
[call site]
00580
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00581
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00582
fqz_update_ctx
[function]
[call site]
00583
realloc
[call site]
00584
realloc
[call site]
00585
RC_FinishDecode
[function]
[call site]
00586
fqz_destroy_models
[function]
[call site]
00587
htscodecs_tls_free
[function]
[call site]
00588
fqz_free_parameters
[function]
[call site]
00589
fqz_destroy_models
[function]
[call site]
00590
fqz_free_parameters
[function]
[call site]
00591
rans_uncompress_4x16
[function]
[call site]
00592
rans_uncompress_to_4x16
[function]
[call site]
00593
var_get_u32
[function]
[call site]
00594
var_get_u32
[function]
[call site]
00595
rans_uncompress_to_4x16
[function]
[call site]
00596
unstripe
[function]
[call site]
00597
var_get_u32
[function]
[call site]
00598
hts_unpack_meta
[function]
[call site]
00599
var_get_u32
[function]
[call site]
00600
var_get_u32
[function]
[call site]
00601
var_get_u32
[function]
[call site]
00602
var_get_u32
[function]
[call site]
00603
rans_dec_func
[function]
[call site]
00604
pthread_once
[call site]
00605
htscodecs_tls_cpu_init
[function]
[call site]
00606
__get_cpuid_max
[function]
[call site]
00607
not_ancient_darwin
[function]
[call site]
00608
strerror
[call site]
00609
fprintf
[call site]
00610
fprintf
[call site]
00611
rans_dec_func
[function]
[call site]
00612
hts_rle_decode
[function]
[call site]
00613
var_get_u32
[function]
[call site]
00614
hts_unpack
[function]
[call site]
00615
arith_uncompress_to
[function]
[call site]
00616
var_get_u32
[function]
[call site]
00617
var_get_u32
[function]
[call site]
00618
arith_uncompress_to
[function]
[call site]
00619
unstripe
[function]
[call site]
00620
var_get_u32
[function]
[call site]
00621
hts_unpack_meta
[function]
[call site]
00622
var_get_u32
[function]
[call site]
00623
BZ2_bzBuffToBuffDecompress
[call site]
00624
arith_uncompress_O1_RLE
[function]
[call site]
00625
htscodecs_tls_alloc
[function]
[call site]
00626
SIMPLE_MODEL256_init
[function]
[call site]
00627
htscodecs_tls_alloc
[function]
[call site]
00628
htscodecs_tls_free
[function]
[call site]
00629
SIMPLE_MODEL258_init
[function]
[call site]
00630
RC_SetInput
[function]
[call site]
00631
RC_StartDecode
[function]
[call site]
00632
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00633
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00634
SIMPLE_MODEL258_normalize
[function]
[call site]
00635
RC_FinishDecode
[function]
[call site]
00636
htscodecs_tls_free
[function]
[call site]
00637
htscodecs_tls_free
[function]
[call site]
00638
htscodecs_tls_free
[function]
[call site]
00639
htscodecs_tls_free
[function]
[call site]
00640
arith_uncompress_O0_RLE
[function]
[call site]
00641
SIMPLE_MODEL256_init
[function]
[call site]
00642
htscodecs_tls_alloc
[function]
[call site]
00643
SIMPLE_MODEL258_init
[function]
[call site]
00644
RC_SetInput
[function]
[call site]
00645
RC_StartDecode
[function]
[call site]
00646
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00647
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00648
RC_FinishDecode
[function]
[call site]
00649
htscodecs_tls_free
[function]
[call site]
00650
htscodecs_tls_free
[function]
[call site]
00651
arith_uncompress_O1
[function]
[call site]
00652
htscodecs_tls_alloc
[function]
[call site]
00653
SIMPLE_MODEL256_init
[function]
[call site]
00654
RC_SetInput
[function]
[call site]
00655
RC_StartDecode
[function]
[call site]
00656
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00657
RC_FinishDecode
[function]
[call site]
00658
htscodecs_tls_free
[function]
[call site]
00659
htscodecs_tls_free
[function]
[call site]
00660
arith_uncompress_O0
[function]
[call site]
00661
SIMPLE_MODEL256_init
[function]
[call site]
00662
RC_SetInput
[function]
[call site]
00663
RC_StartDecode
[function]
[call site]
00664
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00665
RC_FinishDecode
[function]
[call site]
00666
hts_unpack
[function]
[call site]
00667
tok3_decode_names
[function]
[call site]
00668
create_context
[function]
[call site]
00669
fprintf
[call site]
00670
htscodecs_tls_alloc
[function]
[call site]
00671
uncompressed_size
[function]
[call site]
00672
var_get_u32
[function]
[call site]
00673
var_get_u32
[function]
[call site]
00674
uncompress
[function]
[call site]
00675
var_get_u32
[function]
[call site]
00676
arith_decode
[function]
[call site]
00677
var_get_u32
[function]
[call site]
00678
arith_uncompress_to
[function]
[call site]
00679
rans_decode
[function]
[call site]
00680
var_get_u32
[function]
[call site]
00681
rans_uncompress_to_4x16
[function]
[call site]
00682
decode_name
[function]
[call site]
00683
decode_token_type
[function]
[call site]
00684
decode_token_int
[function]
[call site]
00685
strlen
[call site]
00686
strcpy
[call site]
00687
strlen
[call site]
00688
decode_token_type
[function]
[call site]
00689
decode_token_char
[function]
[call site]
00690
decode_token_alpha
[function]
[call site]
00691
decode_token_int1
[function]
[call site]
00692
decode_token_int
[function]
[call site]
00693
append_uint32_fixed
[function]
[call site]
00694
decode_token_int1
[function]
[call site]
00695
append_uint32_fixed
[function]
[call site]
00696
decode_token_int
[function]
[call site]
00697
append_uint32_var
[function]
[call site]
00698
decode_token_int1
[function]
[call site]
00699
append_uint32_var
[function]
[call site]
00700
append_uint32_var
[function]
[call site]
00701
append_uint32_fixed
[function]
[call site]
00702
realloc
[call site]
00703
free_context
[function]
[call site]
00704
pool_destroy
[function]
[call site]
00705
htscodecs_tls_free
[function]
[call site]
00706
free_context
[function]
[call site]
00707
cram_free_container
[function]
[call site]
00708
cram_free_block
[function]
[call site]
00709
int32_get_blk
[function]
[call site]
00710
cram_free_container
[function]
[call site]
00711
cram_free_block
[function]
[call site]
00712
cram_free_container
[function]
[call site]
00713
cram_free_block
[function]
[call site]
00714
cram_free_block
[function]
[call site]
00715
cram_read_block
[function]
[call site]
00716
cram_free_container
[function]
[call site]
00717
cram_free_block
[function]
[call site]
00718
cram_free_container
[function]
[call site]
00719
hread
[function]
[call site]
00720
cram_free_container
[function]
[call site]
00721
cram_free_container
[function]
[call site]
00722
sam_hdr_init
[function]
[call site]
00723
calloc
[call site]
00724
sam_hdr_add_lines
[function]
[call site]
00725
sam_hdr_fill_hrecs
[function]
[call site]
00726
sam_hrecs_new
[function]
[call site]
00727
calloc
[call site]
00728
kh_init_sam_hrecs_t
[function]
[call site]
00729
calloc
[call site]
00730
kh_init_m_s2i
[function]
[call site]
00731
calloc
[call site]
00732
kh_init_m_s2i
[function]
[call site]
00733
kh_init_m_s2i
[function]
[call site]
00734
pool_create
[function]
[call site]
00735
next_power_2
[function]
[call site]
00736
pool_create
[function]
[call site]
00737
string_pool_create
[function]
[call site]
00738
sam_hrecs_init_type_order
[function]
[call site]
00739
calloc
[call site]
00740
kh_destroy_sam_hrecs_t
[function]
[call site]
00741
pool_destroy
[function]
[call site]
00742
pool_destroy
[function]
[call site]
00743
string_pool_destroy
[function]
[call site]
00744
sam_hrecs_refs_from_targets_array
[function]
[call site]
00745
hts_log
[function]
[call site]
00746
hts_realloc_p
[function]
[call site]
00747
hts_prod_sat2
[function]
[call site]
00748
hts_realloc
[function]
[call site]
00749
__errno_location
[call site]
00750
realloc
[call site]
00751
kh_grow_to_fit_m_s2i
[function]
[call site]
00752
kh_resize_m_s2i
[function]
[call site]
00753
__errno_location
[call site]
00754
__ac_FNV1a_hash_string
[function]
[call site]
00755
string_dup
[function]
[call site]
00756
strlen
[call site]
00757
string_ndup
[function]
[call site]
00758
string_alloc
[function]
[call site]
00759
new_string_pool
[function]
[call site]
00760
hts_realloc_p
[function]
[call site]
00761
hts_prod_sat2
[function]
[call site]
00762
hts_realloc
[function]
[call site]
00763
hts_malloc
[function]
[call site]
00764
kh_get_s2i
[function]
[call site]
00765
__ac_FNV1a_hash_string
[function]
[call site]
00766
strcmp
[call site]
00767
kh_put_m_s2i
[function]
[call site]
00768
strcmp
[call site]
00769
hts_log
[function]
[call site]
00770
__errno_location
[call site]
00771
strerror
[call site]
00772
hts_log
[function]
[call site]
00773
kh_get_m_s2i
[function]
[call site]
00774
kh_del_m_s2i
[function]
[call site]
00775
sam_hrecs_free
[function]
[call site]
00776
kh_destroy_sam_hrecs_t
[function]
[call site]
00777
kh_destroy_m_s2i
[function]
[call site]
00778
kh_destroy_m_s2i
[function]
[call site]
00779
kh_destroy_m_s2i
[function]
[call site]
00780
pool_destroy
[function]
[call site]
00781
pool_destroy
[function]
[call site]
00782
string_pool_destroy
[function]
[call site]
00783
sam_hrecs_parse_lines
[function]
[call site]
00784
strlen
[call site]
00785
sam_hrecs_error
[function]
[call site]
00786
hts_log
[function]
[call site]
00787
sam_hrecs_parse_single_line
[function]
[call site]
00788
sam_hrecs_error
[function]
[call site]
00789
isalpha_c
[function]
[call site]
00790
__ctype_b_loc
[call site]
00791
sam_hrecs_error
[function]
[call site]
00792
TYPEKEY
[function]
[call site]
00793
pool_alloc
[function]
[call site]
00794
new_pool
[function]
[call site]
00795
hts_realloc_ps
[function]
[call site]
00796
hts_add_sat2
[function]
[call site]
00797
hts_prod_sat2
[function]
[call site]
00798
hts_realloc
[function]
[call site]
00799
hts_malloc_p
[function]
[call site]
00800
kh_put_sam_hrecs_t
[function]
[call site]
00801
kh_resize_sam_hrecs_t
[function]
[call site]
00802
realloc
[call site]
00803
TYPEKEY
[function]
[call site]
00804
parse_comment_line
[function]
[call site]
00805
sam_hrecs_error
[function]
[call site]
00806
warn_if_known_stderr
[function]
[call site]
00807
kmemmem
[function]
[call site]
00808
boyer_moore
[function]
[call site]
00809
memchr
[call site]
00810
ksBM_prep
[function]
[call site]
00811
hts_calloc_ps
[function]
[call site]
00812
hts_add_sat2
[function]
[call site]
00813
hts_calloc
[function]
[call site]
00814
__errno_location
[call site]
00815
calloc
[call site]
00816
calloc
[call site]
00817
karp_rabin
[function]
[call site]
00818
fast_exp
[function]
[call site]
00819
memcmp
[call site]
00820
known_stderr
[function]
[call site]
00821
hts_log
[function]
[call site]
00822
hts_log
[function]
[call site]
00823
kmemmem
[function]
[call site]
00824
known_stderr
[function]
[call site]
00825
kmemmem
[function]
[call site]
00826
known_stderr
[function]
[call site]
00827
pool_alloc
[function]
[call site]
00828
string_ndup
[function]
[call site]
00829
parse_noncomment_line
[function]
[call site]
00830
TYPEKEY
[function]
[call site]
00831
sam_hrecs_error
[function]
[call site]
00832
warn_if_known_stderr
[function]
[call site]
00833
sam_hrecs_error
[function]
[call site]
00834
warn_if_known_stderr
[function]
[call site]
00835
pool_alloc
[function]
[call site]
00836
string_ndup
[function]
[call site]
00837
sam_hrecs_global_list_add
[function]
[call site]
00838
TYPEKEY
[function]
[call site]
00839
__assert_fail
[call site]
00840
sam_hrecs_free_tags
[function]
[call site]
00841
sam_hrecs_free_tags
[function]
[call site]
00842
pool_free
[function]
[call site]
00843
pool_free
[function]
[call site]
00844
TYPEKEY
[function]
[call site]
00845
kh_grow_to_fit_m_s2i
[function]
[call site]
00846
hts_realloc_p
[function]
[call site]
00847
sam_hrecs_update_hashes
[function]
[call site]
00848
TYPEKEY
[function]
[call site]
00849
__assert_fail
[call site]
00850
__assert_fail
[call site]
00851
strtoll
[call site]
00852
__assert_fail
[call site]
00853
hts_log
[function]
[call site]
00854
hts_log
[function]
[call site]
00855
hts_log
[function]
[call site]
00856
kh_get_m_s2i
[function]
[call site]
00857
snprintf
[call site]
00858
sam_hrecs_update
[function]
[call site]
00859
sam_hrecs_vupdate
[function]
[call site]
00860
sam_hrecs_find_key
[function]
[call site]
00861
pool_alloc
[function]
[call site]
00862
strlen
[call site]
00863
hts_add_sat2
[function]
[call site]
00864
string_alloc
[function]
[call site]
00865
snprintf
[call site]
00866
sam_hrecs_add_ref_altnames
[function]
[call site]
00867
kstrtok
[function]
[call site]
00868
strchr
[call site]
00869
strlen
[call site]
00870
string_ndup
[function]
[call site]
00871
kh_put_m_s2i
[function]
[call site]
00872
hts_log
[function]
[call site]
00873
strcmp
[call site]
00874
sam_hrecs_add_ref_altnames
[function]
[call site]
00875
strcmp
[call site]
00876
hts_log
[function]
[call site]
00877
hts_log
[function]
[call site]
00878
hts_realloc_p
[function]
[call site]
00879
kh_put_m_s2i
[function]
[call site]
00880
sam_hrecs_add_ref_altnames
[function]
[call site]
00881
TYPEKEY
[function]
[call site]
00882
sam_hrecs_find_key
[function]
[call site]
00883
hts_log
[function]
[call site]
00884
__assert_fail
[call site]
00885
kh_get_m_s2i
[function]
[call site]
00886
__assert_fail
[call site]
00887
hts_log
[function]
[call site]
00888
hts_realloc_p
[function]
[call site]
00889
kh_put_m_s2i
[function]
[call site]
00890
TYPEKEY
[function]
[call site]
00891
hts_realloc_p
[function]
[call site]
00892
__assert_fail
[call site]
00893
hts_log
[function]
[call site]
00894
kh_get_m_s2i
[function]
[call site]
00895
kh_put_m_s2i
[function]
[call site]
00896
hts_realloc_p
[function]
[call site]
00897
sam_hrecs_free
[function]
[call site]
00898
add_stub_ref_sq_lines
[function]
[call site]
00899
snprintf
[call site]
00900
sam_hrecs_add
[function]
[call site]
00901
sam_hrecs_vadd
[function]
[call site]
00902
TYPEKEY
[function]
[call site]
00903
strncmp
[call site]
00904
sam_hrecs_find_type_id
[function]
[call site]
00905
kh_get_m_s2i
[function]
[call site]
00906
kh_get_m_s2i
[function]
[call site]
00907
kh_get_m_s2i
[function]
[call site]
00908
TYPEKEY
[function]
[call site]
00909
kh_get_sam_hrecs_t
[function]
[call site]
00910
sam_hrecs_vupdate
[function]
[call site]
00911
pool_alloc
[function]
[call site]
00912
kh_put_sam_hrecs_t
[function]
[call site]
00913
__assert_fail
[call site]
00914
sam_hrecs_global_list_add
[function]
[call site]
00915
__assert_fail
[call site]
00916
__assert_fail
[call site]
00917
__assert_fail
[call site]
00918
__assert_fail
[call site]
00919
strncmp
[call site]
00920
pool_alloc
[function]
[call site]
00921
strncmp
[call site]
00922
strlen
[call site]
00923
hts_add_sat2
[function]
[call site]
00924
string_alloc
[function]
[call site]
00925
snprintf
[call site]
00926
strlen
[call site]
00927
string_ndup
[function]
[call site]
00928
strncmp
[call site]
00929
pool_alloc
[function]
[call site]
00930
strncmp
[call site]
00931
strlen
[call site]
00932
hts_add_sat2
[function]
[call site]
00933
string_alloc
[function]
[call site]
00934
snprintf
[call site]
00935
strlen
[call site]
00936
string_ndup
[function]
[call site]
00937
TYPEKEY
[function]
[call site]
00938
sam_hrecs_update_hashes
[function]
[call site]
00939
strncmp
[call site]
00940
hts_log
[function]
[call site]
00941
sam_hrecs_free
[function]
[call site]
00942
rebuild_target_arrays
[function]
[call site]
00943
sam_hdr_update_target_arrays
[function]
[call site]
00944
hts_realloc_p
[function]
[call site]
00945
hts_realloc_p
[function]
[call site]
00946
strcmp
[call site]
00947
strdup
[call site]
00948
kh_get_s2i
[function]
[call site]
00949
kh_del_s2i
[function]
[call site]
00950
kh_init_s2i
[function]
[call site]
00951
calloc
[call site]
00952
kh_put_s2i
[function]
[call site]
00953
kh_resize_s2i
[function]
[call site]
00954
__errno_location
[call site]
00955
realloc
[call site]
00956
kh_get_s2i
[function]
[call site]
00957
kh_del_s2i
[function]
[call site]
00958
sam_hrecs_parse_lines
[function]
[call site]
00959
rebuild_target_arrays
[function]
[call site]
00960
redact_header_text
[function]
[call site]
00961
__assert_fail
[call site]
00962
sam_hdr_destroy
[function]
[call site]
00963
sam_hrecs_free
[function]
[call site]
00964
kh_destroy_s2i
[function]
[call site]
00965
cram_free_file_def
[function]
[call site]
00966
calloc
[call site]
00967
strncpy
[call site]
00968
cram_init_tables
[function]
[call site]
00969
strrchr
[call site]
00970
strdup
[call site]
00971
refs_create
[function]
[call site]
00972
calloc
[call site]
00973
string_pool_create
[function]
[call site]
00974
kh_init_refs
[function]
[call site]
00975
calloc
[call site]
00976
pthread_mutex_init
[call site]
00977
refs_free
[function]
[call site]
00978
string_pool_destroy
[function]
[call site]
00979
ref_entry_free_seq
[function]
[call site]
00980
mfclose
[function]
[call site]
00981
mfflush
[function]
[call site]
00982
fwrite
[call site]
00983
fflush
[call site]
00984
fseek
[call site]
00985
fwrite
[call site]
00986
fflush
[call site]
00987
ftell
[call site]
00988
fileno
[call site]
00989
ftell
[call site]
00990
ftruncate
[call site]
00991
munmap
[call site]
00992
fclose
[call site]
00993
mfdestroy
[function]
[call site]
00994
kh_destroy_refs
[function]
[call site]
00995
bgzf_close
[function]
[call site]
00996
bgzf_flush
[function]
[call site]
00997
mt_queue
[function]
[call site]
00998
pthread_mutex_lock
[call site]
00999
pool_alloc
[function]
[call site]
01000
pthread_mutex_unlock
[call site]
01001
hts_tpool_dispatch3
[function]
[call site]
01002
pthread_mutex_lock
[call site]
01003
pthread_mutex_unlock
[call site]
01004
__errno_location
[call site]
01005
pthread_mutex_unlock
[call site]
01006
pthread_cond_wait
[call site]
01007
pthread_mutex_unlock
[call site]
01008
wake_next_worker
[function]
[call site]
01009
pthread_mutex_lock
[call site]
01010
__assert_fail
[call site]
01011
__assert_fail
[call site]
01012
pthread_cond_signal
[call site]
01013
pthread_mutex_unlock
[call site]
01014
pthread_mutex_unlock
[call site]
01015
bgzf_encode_level0_func
[function]
[call site]
01016
u16_to_le
[function]
[call site]
01017
u16_to_le
[function]
[call site]
01018
u16_to_le
[function]
[call site]
01019
hts_crc32
[function]
[call site]
01020
crc32
[call site]
01021
u32_to_le
[function]
[call site]
01022
u32_to_le
[function]
[call site]
01023
job_cleanup
[function]
[call site]
01024
pthread_mutex_lock
[call site]
01025
pool_free
[function]
[call site]
01026
pthread_mutex_unlock
[call site]
01027
hts_tpool_dispatch3
[function]
[call site]
01028
bgzf_encode_func
[function]
[call site]
01029
bgzf_compress
[function]
[call site]
01030
u16_to_le
[function]
[call site]
01031
u16_to_le
[function]
[call site]
01032
deflateInit2_
[call site]
01033
bgzf_zerr
[function]
[call site]
01034
hts_log
[function]
[call site]
01035
deflate
[call site]
01036
deflateEnd
[call site]
01037
bgzf_zerr
[function]
[call site]
01038
hts_log
[function]
[call site]
01039
deflateEnd
[call site]
01040
deflateEnd
[call site]
01041
bgzf_zerr
[function]
[call site]
01042
hts_log
[function]
[call site]
01043
packInt16
[function]
[call site]
01044
crc32
[call site]
01045
packInt32
[function]
[call site]
01046
packInt32
[function]
[call site]
01047
job_cleanup
[function]
[call site]
01048
job_cleanup
[function]
[call site]
01049
pthread_mutex_lock
[call site]
01050
pthread_mutex_unlock
[call site]
01051
mt_flush_queue
[function]
[call site]
01052
pthread_mutex_lock
[call site]
01053
hts_tpool_process_is_shutdown
[function]
[call site]
01054
pthread_mutex_lock
[call site]
01055
pthread_mutex_unlock
[call site]
01056
pthread_mutex_unlock
[call site]
01057
hts_usleep
[function]
[call site]
01058
nanosleep
[call site]
01059
pthread_mutex_lock
[call site]
01060
pthread_mutex_unlock
[call site]
01061
hts_tpool_process_flush
[function]
[call site]
01062
pthread_mutex_lock
[call site]
01063
pthread_cond_signal
[call site]
01064
pthread_cond_wait
[call site]
01065
gettimeofday
[call site]
01066
pthread_cond_timedwait
[call site]
01067
gettimeofday
[call site]
01068
pthread_cond_timedwait
[call site]
01069
pthread_mutex_unlock
[call site]
01070
pthread_mutex_lock
[call site]
01071
pthread_mutex_unlock
[call site]
01072
hflush
[function]
[call site]
01073
flush_buffer
[function]
[call site]
01074
__errno_location
[call site]
01075
bgzf_index_add_block
[function]
[call site]
01076
bgzf_index_grow
[function]
[call site]
01077
hts_realloc_p
[function]
[call site]
01078
deflate_block
[function]
[call site]
01079
bgzf_compress
[function]
[call site]
01080
bgzf_gzip_compress
[function]
[call site]
01081
deflate
[call site]
01082
bgzf_zerr
[function]
[call site]
01083
hts_log
[function]
[call site]
01084
hts_log
[function]
[call site]
01085
hts_log
[function]
[call site]
01086
bgzf_zerr
[function]
[call site]
01087
hts_log
[function]
[call site]
01088
hwrite
[function]
[call site]
01089
hfile_set_blksize
[function]
[call site]
01090
realloc
[call site]
01091
hwrite2
[function]
[call site]
01092
flush_buffer
[function]
[call site]
01093
__errno_location
[call site]
01094
hwrite2
[function]
[call site]
01095
hts_log
[function]
[call site]
01096
bgzf_close_mt
[function]
[call site]
01097
mt_destroy
[function]
[call site]
01098
pthread_mutex_lock
[call site]
01099
pthread_cond_signal
[call site]
01100
hts_tpool_wake_dispatch
[function]
[call site]
01101
pthread_mutex_lock
[call site]
01102
pthread_cond_signal
[call site]
01103
pthread_mutex_unlock
[call site]
01104
pthread_mutex_unlock
[call site]
01105
hts_tpool_process_is_shutdown
[function]
[call site]
01106
hts_tpool_process_destroy
[function]
[call site]
01107
pthread_mutex_lock
[call site]
01108
pthread_mutex_unlock
[call site]
01109
hts_tpool_process_reset
[function]
[call site]
01110
pthread_mutex_lock
[call site]
01111
pthread_mutex_unlock
[call site]
01112
hts_tpool_delete_result
[function]
[call site]
01113
hts_tpool_process_flush
[function]
[call site]
01114
pthread_mutex_lock
[call site]
01115
pthread_cond_signal
[call site]
01116
pthread_mutex_unlock
[call site]
01117
hts_tpool_delete_result
[function]
[call site]
01118
pthread_mutex_lock
[call site]
01119
hts_tpool_process_detach_locked
[function]
[call site]
01120
hts_tpool_process_shutdown_locked
[function]
[call site]
01121
pthread_cond_broadcast
[call site]
01122
pthread_cond_broadcast
[call site]
01123
pthread_cond_broadcast
[call site]
01124
pthread_cond_broadcast
[call site]
01125
pthread_mutex_unlock
[call site]
01126
pthread_cond_destroy
[call site]
01127
pthread_cond_destroy
[call site]
01128
pthread_cond_destroy
[call site]
01129
pthread_cond_destroy
[call site]
01130
pthread_mutex_unlock
[call site]
01131
pthread_join
[call site]
01132
pthread_mutex_destroy
[call site]
01133
pthread_mutex_destroy
[call site]
01134
pthread_mutex_destroy
[call site]
01135
pthread_cond_destroy
[call site]
01136
pool_free
[function]
[call site]
01137
hts_tpool_destroy
[function]
[call site]
01138
pthread_mutex_lock
[call site]
01139
pthread_cond_signal
[call site]
01140
pthread_mutex_unlock
[call site]
01141
pthread_join
[call site]
01142
pthread_mutex_destroy
[call site]
01143
pthread_cond_destroy
[call site]
01144
pool_destroy
[function]
[call site]
01145
fflush
[call site]
01146
deflate_block
[function]
[call site]
01147
bgzf_zerr
[function]
[call site]
01148
hts_log
[function]
[call site]
01149
bgzf_close_mt
[function]
[call site]
01150
hwrite
[function]
[call site]
01151
hflush
[function]
[call site]
01152
hts_log
[function]
[call site]
01153
bgzf_close_mt
[function]
[call site]
01154
inflateEnd
[call site]
01155
deflateEnd
[call site]
01156
bgzf_zerr
[function]
[call site]
01157
hts_log
[function]
[call site]
01158
hclose
[function]
[call site]
01159
writebuffer_is_nonempty
[function]
[call site]
01160
hflush
[function]
[call site]
01161
__errno_location
[call site]
01162
hfile_destroy
[function]
[call site]
01163
__errno_location
[call site]
01164
bgzf_index_destroy
[function]
[call site]
01165
free_cache
[function]
[call site]
01166
kh_destroy_bgzf_cache
[function]
[call site]
01167
bgzf_clear_private_data
[function]
[call site]
01168
__assert_fail
[call site]
01169
pthread_mutex_destroy
[call site]
01170
pthread_mutex_init
[call site]
01171
pthread_mutex_init
[call site]
01172
pthread_mutex_init
[call site]
01173
pthread_mutex_init
[call site]
01174
cram_new_metrics
[function]
[call site]
01175
calloc
[call site]
01176
kh_init_m_metrics
[function]
[call site]
01177
calloc
[call site]
01178
refs_from_header
[function]
[call site]
01179
sam_hdr_fill_hrecs
[function]
[call site]
01180
hts_realloc_ps
[function]
[call site]
01181
kh_get_refs
[function]
[call site]
01182
__ac_FNV1a_hash_string
[function]
[call site]
01183
strcmp
[call site]
01184
calloc
[call site]
01185
string_dup
[function]
[call site]
01186
sam_hrecs_find_type_id
[function]
[call site]
01187
sam_hrecs_find_key
[function]
[call site]
01188
string_dup
[function]
[call site]
01189
sam_hrecs_find_key
[function]
[call site]
01190
strtoll
[call site]
01191
kh_put_refs
[function]
[call site]
01192
kh_resize_refs
[function]
[call site]
01193
__errno_location
[call site]
01194
realloc
[call site]
01195
cram_set_option
[function]
[call site]
01196
cram_set_voption
[function]
[call site]
01197
__errno_location
[call site]
01198
strdup
[call site]
01199
refs_free
[function]
[call site]
01200
cram_seek_to_refpos
[function]
[call site]
01201
cram_index_query
[function]
[call site]
01202
cram_seek
[function]
[call site]
01203
cram_drain_rqueue
[function]
[call site]
01204
hts_tpool_process_empty
[function]
[call site]
01205
pthread_mutex_lock
[call site]
01206
pthread_mutex_unlock
[call site]
01207
hts_tpool_next_result_wait
[function]
[call site]
01208
pthread_mutex_lock
[call site]
01209
hts_tpool_next_result_locked
[function]
[call site]
01210
pthread_cond_signal
[call site]
01211
wake_next_worker
[function]
[call site]
01212
gettimeofday
[call site]
01213
pthread_mutex_unlock
[call site]
01214
hts_tpool_process_destroy
[function]
[call site]
01215
pthread_cond_timedwait
[call site]
01216
pthread_mutex_unlock
[call site]
01217
hts_tpool_result_data
[function]
[call site]
01218
cram_free_container
[function]
[call site]
01219
cram_free_slice
[function]
[call site]
01220
hts_tpool_delete_result
[function]
[call site]
01221
cram_free_container
[function]
[call site]
01222
cram_free_slice
[function]
[call site]
01223
cram_free_container
[function]
[call site]
01224
hseek
[function]
[call site]
01225
pthread_mutex_lock
[call site]
01226
pthread_mutex_unlock
[call site]
01227
cram_free_container
[function]
[call site]
01228
cram_free_container
[function]
[call site]
01229
pthread_mutex_lock
[call site]
01230
pthread_mutex_unlock
[call site]
01231
pthread_mutex_lock
[call site]
01232
pthread_mutex_unlock
[call site]
01233
pthread_mutex_lock
[call site]
01234
pthread_mutex_unlock
[call site]
01235
cram_load_reference
[function]
[call site]
01236
refs_load_fai
[function]
[call site]
01237
strlen
[call site]
01238
refs_create
[function]
[call site]
01239
bgzf_close
[function]
[call site]
01240
strstr
[call site]
01241
string_ndup
[function]
[call site]
01242
snprintf
[call site]
01243
strcmp
[call site]
01244
string_ndup
[function]
[call site]
01245
snprintf
[call site]
01246
string_dup
[function]
[call site]
01247
snprintf
[call site]
01248
bgzf_open_ref
[function]
[call site]
01249
strncmp
[call site]
01250
hisremote
[function]
[call site]
01251
find_scheme_handler
[function]
[call site]
01252
snprintf
[call site]
01253
access
[call site]
01254
fai_build
[function]
[call site]
01255
fai_build3
[function]
[call site]
01256
fai_build3_core
[function]
[call site]
01257
bgzf_open
[function]
[call site]
01258
strchr
[call site]
01259
hopen
[function]
[call site]
01260
bgzf_read_init
[function]
[call site]
01261
hclose_abruptly
[function]
[call site]
01262
strchr
[call site]
01263
hopen
[function]
[call site]
01264
bgzf_write_init
[function]
[call site]
01265
__errno_location
[call site]
01266
ed_is_big
[function]
[call site]
01267
__errno_location
[call site]
01268
strerror
[call site]
01269
hts_log
[function]
[call site]
01270
bgzf_index_build_init
[function]
[call site]
01271
bgzf_index_destroy
[function]
[call site]
01272
calloc
[call site]
01273
hts_log
[function]
[call site]
01274
fai_build_core
[function]
[call site]
01275
calloc
[call site]
01276
kh_init_s
[function]
[call site]
01277
bgzf_getc_
[function]
[call site]
01278
bgzf_getc
[function]
[call site]
01279
bgzf_read_block
[function]
[call site]
01280
hts_tpool_next_result_wait
[function]
[call site]
01281
hts_tpool_result_data
[function]
[call site]
01282
hts_malloc_p
[function]
[call site]
01283
mt_destroy
[function]
[call site]
01284
hts_log
[function]
[call site]
01285
hts_tpool_delete_result
[function]
[call site]
01286
hts_log
[function]
[call site]
01287
hts_tpool_delete_result
[function]
[call site]
01288
bgzf_index_add_block
[function]
[call site]
01289
hts_tpool_delete_result
[function]
[call site]
01290
pthread_mutex_lock
[call site]
01291
pool_free
[function]
[call site]
01292
pthread_mutex_unlock
[call site]
01293
hts_tpool_delete_result
[function]
[call site]
01294
bgzf_htell
[function]
[call site]
01295
pthread_mutex_lock
[call site]
01296
pthread_mutex_unlock
[call site]
01297
htell
[function]
[call site]
01298
hread
[function]
[call site]
01299
__errno_location
[call site]
01300
strerror
[call site]
01301
hts_log
[function]
[call site]
01302
inflate_gzip_block
[function]
[call site]
01303
hread
[function]
[call site]
01304
inflate
[call site]
01305
bgzf_zerr
[function]
[call site]
01306
hts_log
[function]
[call site]
01307
hpeek
[function]
[call site]
01308
inflateReset
[call site]
01309
bgzf_zerr
[function]
[call site]
01310
hts_log
[function]
[call site]
01311
hts_log
[function]
[call site]
01312
hts_log
[function]
[call site]
01313
load_block_from_cache
[function]
[call site]
01314
kh_get_bgzf_cache
[function]
[call site]
01315
hseek
[function]
[call site]
01316
hts_log
[function]
[call site]
01317
exit
[call site]
01318
hread
[function]
[call site]
01319
hts_log
[function]
[call site]
01320
check_header
[function]
[call site]
01321
unpackInt16
[function]
[call site]
01322
unpackInt16
[function]
[call site]
01323
hts_log
[function]
[call site]
01324
hread
[function]
[call site]
01325
calloc
[call site]
01326
inflateInit2_
[call site]
01327
bgzf_zerr
[function]
[call site]
01328
hts_log
[function]
[call site]
01329
inflate_gzip_block
[function]
[call site]
01330
hts_log
[function]
[call site]
01331
unpackInt16
[function]
[call site]
01332
hts_log
[function]
[call site]
01333
hread
[function]
[call site]
01334
hts_log
[function]
[call site]
01335
inflate_block
[function]
[call site]
01336
le_to_u32
[function]
[call site]
01337
bgzf_uncompress
[function]
[call site]
01338
inflateInit2_
[call site]
01339
bgzf_zerr
[function]
[call site]
01340
hts_log
[function]
[call site]
01341
inflate
[call site]
01342
bgzf_zerr
[function]
[call site]
01343
hts_log
[function]
[call site]
01344
inflateEnd
[call site]
01345
bgzf_zerr
[function]
[call site]
01346
hts_log
[function]
[call site]
01347
inflateEnd
[call site]
01348
bgzf_zerr
[function]
[call site]
01349
hts_log
[function]
[call site]
01350
crc32
[call site]
01351
hts_log
[function]
[call site]
01352
bgzf_zerr
[function]
[call site]
01353
hts_log
[function]
[call site]
01354
bgzf_htell
[function]
[call site]
01355
bgzf_index_add_block
[function]
[call site]
01356
cache_block
[function]
[call site]
01357
kh_del_bgzf_cache
[function]
[call site]
01358
kh_put_bgzf_cache
[function]
[call site]
01359
kh_resize_bgzf_cache
[function]
[call site]
01360
__errno_location
[call site]
01361
realloc
[call site]
01362
bgzf_htell
[function]
[call site]
01363
hts_log
[function]
[call site]
01364
hts_log
[function]
[call site]
01365
bgzf_getc_
[function]
[call site]
01366
hts_log
[function]
[call site]
01367
__ctype_b_loc
[call site]
01368
hts_log
[function]
[call site]
01369
fai_insert_index
[function]
[call site]
01370
hts_log
[function]
[call site]
01371
hts_log
[function]
[call site]
01372
hts_log
[function]
[call site]
01373
hts_log
[function]
[call site]
01374
hts_realloc_p
[function]
[call site]
01375
hts_log
[function]
[call site]
01376
strdup
[call site]
01377
__errno_location
[call site]
01378
strerror
[call site]
01379
hts_log
[function]
[call site]
01380
kh_put_s
[function]
[call site]
01381
kh_resize_s
[function]
[call site]
01382
__ac_FNV1a_hash_string
[function]
[call site]
01383
__errno_location
[call site]
01384
strerror
[call site]
01385
hts_log
[function]
[call site]
01386
hts_log
[function]
[call site]
01387
__ctype_b_loc
[call site]
01388
kputc_
[function]
[call site]
01389
ks_resize
[function]
[call site]
01390
bgzf_getc_
[function]
[call site]
01391
kputsn
[function]
[call site]
01392
hts_log
[function]
[call site]
01393
bgzf_getc_
[function]
[call site]
01394
bgzf_utell
[function]
[call site]
01395
bgzf_getc_
[function]
[call site]
01396
bgzf_utell
[function]
[call site]
01397
hts_log
[function]
[call site]
01398
isgraph_
[function]
[call site]
01399
bgzf_getc_
[function]
[call site]
01400
hts_log
[function]
[call site]
01401
bgzf_getc_
[function]
[call site]
01402
bgzf_utell
[function]
[call site]
01403
hts_log
[function]
[call site]
01404
hts_log
[function]
[call site]
01405
isgraph_
[function]
[call site]
01406
bgzf_getc_
[function]
[call site]
01407
hts_log
[function]
[call site]
01408
hts_log
[function]
[call site]
01409
hts_log
[function]
[call site]
01410
fai_insert_index
[function]
[call site]
01411
hts_log
[function]
[call site]
01412
fai_destroy
[function]
[call site]
01413
kh_destroy_s
[function]
[call site]
01414
bgzf_close
[function]
[call site]
01415
hts_log
[function]
[call site]
01416
ksprintf
[function]
[call site]
01417
ksprintf
[function]
[call site]
01418
bgzf_index_dump
[function]
[call site]
01419
hts_log
[function]
[call site]
01420
__errno_location
[call site]
01421
get_name_suffix
[function]
[call site]
01422
strlen
[call site]
01423
snprintf
[call site]
01424
hopen
[function]
[call site]
01425
bgzf_index_dump_hfile
[function]
[call site]
01426
hts_log
[function]
[call site]
01427
__errno_location
[call site]
01428
bgzf_flush
[function]
[call site]
01429
hwrite_uint64
[function]
[call site]
01430
ed_is_big
[function]
[call site]
01431
ed_swap_8
[function]
[call site]
01432
hwrite
[function]
[call site]
01433
hwrite_uint64
[function]
[call site]
01434
hwrite_uint64
[function]
[call site]
01435
__errno_location
[call site]
01436
strerror
[call site]
01437
hts_log
[function]
[call site]
01438
hclose
[function]
[call site]
01439
__errno_location
[call site]
01440
strerror
[call site]
01441
hts_log
[function]
[call site]
01442
hclose_abruptly
[function]
[call site]
01443
hts_log
[function]
[call site]
01444
bgzf_close
[function]
[call site]
01445
__errno_location
[call site]
01446
strerror
[call site]
01447
hts_log
[function]
[call site]
01448
hopen
[function]
[call site]
01449
__errno_location
[call site]
01450
strerror
[call site]
01451
hts_log
[function]
[call site]
01452
fai_save
[function]
[call site]
01453
kh_get_s
[function]
[call site]
01454
__assert_fail
[call site]
01455
snprintf
[call site]
01456
snprintf
[call site]
01457
hputs
[function]
[call site]
01458
strlen
[call site]
01459
hputs2
[function]
[call site]
01460
hwrite2
[function]
[call site]
01461
hputs
[function]
[call site]
01462
strerror
[call site]
01463
hts_log
[function]
[call site]
01464
hclose
[function]
[call site]
01465
__errno_location
[call site]
01466
strerror
[call site]
01467
hts_log
[function]
[call site]
01468
fai_destroy
[function]
[call site]
01469
__errno_location
[call site]
01470
bgzf_close
[function]
[call site]
01471
fai_destroy
[function]
[call site]
01472
__errno_location
[call site]
01473
bgzf_open
[function]
[call site]
01474
perror
[call site]
01475
bgzf_index_load
[function]
[call site]
01476
get_name_suffix
[function]
[call site]
01477
hopen
[function]
[call site]
01478
bgzf_index_load_hfile
[function]
[call site]
01479
calloc
[call site]
01480
hread_uint64
[function]
[call site]
01481
hread
[function]
[call site]
01482
ed_is_big
[function]
[call site]
01483
ed_swap_8p
[function]
[call site]
01484
hread_uint64
[function]
[call site]
01485
hread_uint64
[function]
[call site]
01486
__errno_location
[call site]
01487
strerror
[call site]
01488
hts_log
[function]
[call site]
01489
hclose
[function]
[call site]
01490
__errno_location
[call site]
01491
strerror
[call site]
01492
hts_log
[function]
[call site]
01493
hclose_abruptly
[function]
[call site]
01494
hts_log
[function]
[call site]
01495
bgzf_close
[function]
[call site]
01496
hts_log
[function]
[call site]
01497
hopen
[function]
[call site]
01498
hts_log
[function]
[call site]
01499
perror
[call site]
01500
hgets
[function]
[call site]
01501
__errno_location
[call site]
01502
hgetln
[function]
[call site]
01503
hgetdelim
[function]
[call site]
01504
__errno_location
[call site]
01505
writebuffer_is_nonempty
[function]
[call site]
01506
__errno_location
[call site]
01507
memchr
[call site]
01508
refill_buffer
[function]
[call site]
01509
isspace_c
[function]
[call site]
01510
string_dup
[function]
[call site]
01511
isspace_c
[function]
[call site]
01512
strtoll
[call site]
01513
isspace_c
[function]
[call site]
01514
strtoll
[call site]
01515
isspace_c
[function]
[call site]
01516
strtol
[call site]
01517
isspace_c
[function]
[call site]
01518
strtol
[call site]
01519
kh_put_refs
[function]
[call site]
01520
hts_realloc_p
[function]
[call site]
01521
hclose
[function]
[call site]
01522
hclose_abruptly
[function]
[call site]
01523
refs_free
[function]
[call site]
01524
sanitise_SQ_lines
[function]
[call site]
01525
kh_get_refs
[function]
[call site]
01526
strcmp
[call site]
01527
__assert_fail
[call site]
01528
hts_log
[function]
[call site]
01529
refs_free
[function]
[call site]
01530
refs_create
[function]
[call site]
01531
refs_from_header
[function]
[call site]
01532
refs2id
[function]
[call site]
01533
kh_get_refs
[function]
[call site]
01534
hts_log
[function]
[call site]
01535
__isoc99_sscanf
[call site]
01536
hts_log
[function]
[call site]
01537
hts_log
[function]
[call site]
01538
__errno_location
[call site]
01539
cram_init_tables
[function]
[call site]
01540
hts_tpool_init
[function]
[call site]
01541
hts_malloc_p
[function]
[call site]
01542
hts_malloc_p
[function]
[call site]
01543
pthread_mutexattr_init
[call site]
01544
pthread_mutexattr_settype
[call site]
01545
pthread_mutex_init
[call site]
01546
pthread_mutexattr_destroy
[call site]
01547
pthread_mutex_lock
[call site]
01548
pthread_attr_init
[call site]
01549
pthread_attr_getstacksize
[call site]
01550
pthread_attr_setstacksize
[call site]
01551
pthread_cond_init
[call site]
01552
pthread_create
[call site]
01553
tpool_worker
[function]
[call site]
01554
pthread_mutex_lock
[call site]
01555
__assert_fail
[call site]
01556
pthread_cond_wait
[call site]
01557
__assert_fail
[call site]
01558
pthread_cond_broadcast
[call site]
01559
pthread_cond_signal
[call site]
01560
pthread_mutex_unlock
[call site]
01561
hts_tpool_add_result
[function]
[call site]
01562
pthread_mutex_lock
[call site]
01563
pthread_cond_signal
[call site]
01564
pthread_mutex_unlock
[call site]
01565
pthread_mutex_unlock
[call site]
01566
hts_tpool_process_shutdown
[function]
[call site]
01567
pthread_mutex_lock
[call site]
01568
hts_tpool_process_shutdown_locked
[function]
[call site]
01569
pthread_mutex_unlock
[call site]
01570
__assert_fail
[call site]
01571
pthread_cond_broadcast
[call site]
01572
pthread_mutex_unlock
[call site]
01573
pthread_mutex_lock
[call site]
01574
hts_tpool_process_destroy
[function]
[call site]
01575
pthread_mutex_unlock
[call site]
01576
pthread_mutex_lock
[call site]
01577
hts_tpool_process_shutdown_locked
[function]
[call site]
01578
pthread_mutex_unlock
[call site]
01579
pthread_mutex_unlock
[call site]
01580
pthread_attr_destroy
[call site]
01581
__errno_location
[call site]
01582
__errno_location
[call site]
01583
strerror
[call site]
01584
pthread_mutex_unlock
[call site]
01585
pthread_join
[call site]
01586
pthread_cond_destroy
[call site]
01587
pthread_mutex_destroy
[call site]
01588
pthread_attr_destroy
[call site]
01589
__errno_location
[call site]
01590
hts_tpool_process_init
[function]
[call site]
01591
pthread_cond_init
[call site]
01592
pthread_cond_init
[call site]
01593
pthread_cond_init
[call site]
01594
pthread_cond_init
[call site]
01595
hts_tpool_process_attach
[function]
[call site]
01596
pthread_mutex_lock
[call site]
01597
__assert_fail
[call site]
01598
pthread_mutex_unlock
[call site]
01599
hts_tpool_size
[function]
[call site]
01600
hts_tpool_process_init
[function]
[call site]
01601
hts_log
[function]
[call site]
01602
__errno_location
[call site]
01603
bgzf_hopen
[function]
[call site]
01604
__errno_location
[call site]
01605
hts_process_opts
[function]
[call site]
01606
hts_parse_opt_list
[function]
[call site]
01607
strncpy
[call site]
01608
hts_opt_add
[function]
[call site]
01609
strdup
[call site]
01610
strchr
[call site]
01611
strcmp
[call site]
01612
strcmp
[call site]
01613
atoi
[call site]
01614
strcmp
[call site]
01615
strcmp
[call site]
01616
atoi
[call site]
01617
strcmp
[call site]
01618
strcmp
[call site]
01619
atoi
[call site]
01620
strcmp
[call site]
01621
strcmp
[call site]
01622
atoi
[call site]
01623
strcmp
[call site]
01624
strcmp
[call site]
01625
atoi
[call site]
01626
strcmp
[call site]
01627
strcmp
[call site]
01628
atoi
[call site]
01629
strcmp
[call site]
01630
strcmp
[call site]
01631
atoi
[call site]
01632
strcmp
[call site]
01633
strcmp
[call site]
01634
atoi
[call site]
01635
strcmp
[call site]
01636
strcmp
[call site]
01637
atoi
[call site]
01638
strcmp
[call site]
01639
strcmp
[call site]
01640
atoi
[call site]
01641
strcmp
[call site]
01642
strcmp
[call site]
01643
atoi
[call site]
01644
strcmp
[call site]
01645
strcmp
[call site]
01646
atoi
[call site]
01647
strcmp
[call site]
01648
strcmp
[call site]
01649
atoi
[call site]
01650
strcmp
[call site]
01651
strcmp
[call site]
01652
atoi
[call site]
01653
strcmp
[call site]
01654
strcmp
[call site]
01655
atoi
[call site]
01656
strcmp
[call site]
01657
strcmp
[call site]
01658
strcmp
[call site]
01659
strcmp
[call site]
01660
strcmp
[call site]
01661
strcmp
[call site]
01662
strcmp
[call site]
01663
strcmp
[call site]
01664
strcmp
[call site]
01665
strcmp
[call site]
01666
strcmp
[call site]
01667
strcmp
[call site]
01668
strcmp
[call site]
01669
strcmp
[call site]
01670
atoi
[call site]
01671
strcmp
[call site]
01672
strcmp
[call site]
01673
atoi
[call site]
01674
strcmp
[call site]
01675
strcmp
[call site]
01676
strtol
[call site]
01677
strcmp
[call site]
01678
strcmp
[call site]
01679
strtol
[call site]
01680
strcmp
[call site]
01681
strcmp
[call site]
01682
strtol
[call site]
01683
strcmp
[call site]
01684
strcmp
[call site]
01685
strcmp
[call site]
01686
strcmp
[call site]
01687
atoi
[call site]
01688
strcmp
[call site]
01689
strcmp
[call site]
01690
atoi
[call site]
01691
strcmp
[call site]
01692
strcmp
[call site]
01693
strtol
[call site]
01694
strcmp
[call site]
01695
strcmp
[call site]
01696
strtol
[call site]
01697
strcmp
[call site]
01698
strcmp
[call site]
01699
strcmp
[call site]
01700
strcmp
[call site]
01701
strcmp
[call site]
01702
strcmp
[call site]
01703
strcmp
[call site]
01704
strcmp
[call site]
01705
strcmp
[call site]
01706
strcmp
[call site]
01707
strcmp
[call site]
01708
strcmp
[call site]
01709
strcmp
[call site]
01710
strcmp
[call site]
01711
strcmp
[call site]
01712
strcmp
[call site]
01713
strcmp
[call site]
01714
strcmp
[call site]
01715
atoi
[call site]
01716
hts_log
[function]
[call site]
01717
hts_opt_apply
[function]
[call site]
01718
strdup
[call site]
01719
hts_set_opt
[function]
[call site]
01720
hts_set_threads
[function]
[call site]
01721
sam_set_threads
[function]
[call site]
01722
hts_tpool_init
[function]
[call site]
01723
sam_set_thread_pool
[function]
[call site]
01724
sam_state_create
[function]
[call site]
01725
calloc
[call site]
01726
pthread_mutex_init
[call site]
01727
pthread_mutex_init
[call site]
01728
pthread_cond_init
[call site]
01729
hts_tpool_size
[function]
[call site]
01730
hts_tpool_process_init
[function]
[call site]
01731
sam_state_destroy
[function]
[call site]
01732
pthread_mutex_lock
[call site]
01733
pthread_cond_signal
[call site]
01734
hts_tpool_wake_dispatch
[function]
[call site]
01735
hts_tpool_wake_dispatch
[function]
[call site]
01736
pthread_mutex_unlock
[call site]
01737
hts_usleep
[function]
[call site]
01738
pthread_mutex_lock
[call site]
01739
pthread_mutex_unlock
[call site]
01740
hts_tpool_dispatch
[function]
[call site]
01741
hts_tpool_dispatch3
[function]
[call site]
01742
sam_format_worker
[function]
[call site]
01743
pthread_mutex_lock
[call site]
01744
pthread_mutex_unlock
[call site]
01745
calloc
[call site]
01746
sam_state_err
[function]
[call site]
01747
pthread_mutex_lock
[call site]
01748
pthread_mutex_unlock
[call site]
01749
sam_format1_append
[function]
[call site]
01750
kputsn_
[function]
[call site]
01751
__errno_location
[call site]
01752
ks_resize
[function]
[call site]
01753
kputc_
[function]
[call site]
01754
kputw
[function]
[call site]
01755
ks_resize
[function]
[call site]
01756
kputuw
[function]
[call site]
01757
ks_resize
[function]
[call site]
01758
ks_resize
[function]
[call site]
01759
kputc_
[function]
[call site]
01760
kputs
[function]
[call site]
01761
kputc_
[function]
[call site]
01762
kputsn_
[function]
[call site]
01763
kputll
[function]
[call site]
01764
ks_resize
[function]
[call site]
01765
kputuw
[function]
[call site]
01766
kputc_
[function]
[call site]
01767
kputw
[function]
[call site]
01768
kputc_
[function]
[call site]
01769
kputw
[function]
[call site]
01770
kputc_
[function]
[call site]
01771
kputc_
[function]
[call site]
01772
kputc_
[function]
[call site]
01773
kputsn_
[function]
[call site]
01774
kputsn_
[function]
[call site]
01775
kputs
[function]
[call site]
01776
kputc_
[function]
[call site]
01777
kputll
[function]
[call site]
01778
kputc_
[function]
[call site]
01779
kputll
[function]
[call site]
01780
kputc_
[function]
[call site]
01781
ks_resize
[function]
[call site]
01782
nibble2base
[function]
[call site]
01783
add33
[function]
[call site]
01784
kputsn_
[function]
[call site]
01785
kputc_
[function]
[call site]
01786
sam_format_aux1
[function]
[call site]
01787
kputsn_
[function]
[call site]
01788
kputc_
[function]
[call site]
01789
kputsn_
[function]
[call site]
01790
kputw
[function]
[call site]
01791
kputsn_
[function]
[call site]
01792
kputw
[function]
[call site]
01793
kputsn_
[function]
[call site]
01794
le_to_u16
[function]
[call site]
01795
kputuw
[function]
[call site]
01796
kputsn_
[function]
[call site]
01797
le_to_i16
[function]
[call site]
01798
le_to_u16
[function]
[call site]
01799
kputw
[function]
[call site]
01800
kputsn_
[function]
[call site]
01801
le_to_u32
[function]
[call site]
01802
kputuw
[function]
[call site]
01803
kputsn_
[function]
[call site]
01804
le_to_i32
[function]
[call site]
01805
le_to_u32
[function]
[call site]
01806
kputw
[function]
[call site]
01807
kputsn_
[function]
[call site]
01808
kputc_
[function]
[call site]
01809
le_to_float
[function]
[call site]
01810
le_to_u32
[function]
[call site]
01811
ksprintf
[function]
[call site]
01812
le_to_double
[function]
[call site]
01813
le_to_u64
[function]
[call site]
01814
ksprintf
[function]
[call site]
01815
kputc_
[function]
[call site]
01816
kputc_
[function]
[call site]
01817
kputc_
[function]
[call site]
01818
kputsn
[function]
[call site]
01819
le_to_u32
[function]
[call site]
01820
kputsn_
[function]
[call site]
01821
kputc
[function]
[call site]
01822
ks_expand
[function]
[call site]
01823
__errno_location
[call site]
01824
ks_resize
[function]
[call site]
01825
kputw
[function]
[call site]
01826
ks_expand
[function]
[call site]
01827
kputuw
[function]
[call site]
01828
ks_expand
[function]
[call site]
01829
le_to_i16
[function]
[call site]
01830
kputw
[function]
[call site]
01831
ks_expand
[function]
[call site]
01832
le_to_u16
[function]
[call site]
01833
kputuw
[function]
[call site]
01834
ks_expand
[function]
[call site]
01835
le_to_i32
[function]
[call site]
01836
kputw
[function]
[call site]
01837
ks_expand
[function]
[call site]
01838
le_to_u32
[function]
[call site]
01839
kputuw
[function]
[call site]
01840
ks_expand
[function]
[call site]
01841
le_to_float
[function]
[call site]
01842
kputd
[function]
[call site]
01843
__errno_location
[call site]
01844
hts_log
[function]
[call site]
01845
__errno_location
[call site]
01846
kputsn
[function]
[call site]
01847
hts_log
[function]
[call site]
01848
__errno_location
[call site]
01849
hts_log
[function]
[call site]
01850
__errno_location
[call site]
01851
__errno_location
[call site]
01852
sam_state_err
[function]
[call site]
01853
kputc
[function]
[call site]
01854
pthread_mutex_lock
[call site]
01855
pthread_mutex_unlock
[call site]
01856
hts_tpool_process_flush
[function]
[call site]
01857
pthread_mutex_lock
[call site]
01858
pthread_mutex_unlock
[call site]
01859
hts_tpool_process_empty
[function]
[call site]
01860
hts_usleep
[function]
[call site]
01861
pthread_mutex_lock
[call site]
01862
hts_tpool_process_is_shutdown
[function]
[call site]
01863
pthread_mutex_unlock
[call site]
01864
hts_tpool_process_shutdown
[function]
[call site]
01865
pthread_join
[call site]
01866
hts_tpool_process_destroy
[function]
[call site]
01867
hts_tpool_destroy
[function]
[call site]
01868
pthread_mutex_destroy
[call site]
01869
pthread_mutex_destroy
[call site]
01870
pthread_cond_destroy
[call site]
01871
sam_free_sp_bams
[function]
[call site]
01872
sam_free_sp_bams
[function]
[call site]
01873
bam_hdr_destroy
[function]
[call site]
01874
sam_hdr_destroy
[function]
[call site]
01875
bgzf_thread_pool
[function]
[call site]
01876
calloc
[call site]
01877
hts_tpool_size
[function]
[call site]
01878
hts_tpool_process_init
[function]
[call site]
01879
hts_tpool_process_ref_incr
[function]
[call site]
01880
pthread_mutex_lock
[call site]
01881
pthread_mutex_unlock
[call site]
01882
pool_create
[function]
[call site]
01883
pthread_mutex_init
[call site]
01884
pthread_mutex_init
[call site]
01885
pthread_mutex_init
[call site]
01886
pthread_cond_init
[call site]
01887
pthread_create
[call site]
01888
hts_tpool_destroy
[function]
[call site]
01889
hts_get_bgzfp
[function]
[call site]
01890
bgzf_mt
[function]
[call site]
01891
hts_tpool_init
[function]
[call site]
01892
bgzf_thread_pool
[function]
[call site]
01893
hts_tpool_destroy
[function]
[call site]
01894
hts_set_opt
[function]
[call site]
01895
hts_hfile
[function]
[call site]
01896
bgzf_hfile
[function]
[call site]
01897
cram_hfile
[function]
[call site]
01898
bgzf_hfile
[function]
[call site]
01899
hfile_set_blksize
[function]
[call site]
01900
hts_log
[function]
[call site]
01901
hts_log
[function]
[call site]
01902
hts_set_thread_pool
[function]
[call site]
01903
sam_set_thread_pool
[function]
[call site]
01904
hts_get_bgzfp
[function]
[call site]
01905
bgzf_thread_pool
[function]
[call site]
01906
hts_set_opt
[function]
[call site]
01907
hts_set_cache_size
[function]
[call site]
01908
hts_get_bgzfp
[function]
[call site]
01909
bgzf_set_cache_size
[function]
[call site]
01910
fastq_state_set
[function]
[call site]
01911
fastq_state_init
[function]
[call site]
01912
strcmp
[call site]
01916
kh_init_tag
[function]
[call site]
01917
calloc
[call site]
01918
strlen
[call site]
01919
hts_log
[function]
[call site]
01920
kh_put_tag
[function]
[call site]
01921
kh_resize_tag
[function]
[call site]
01922
__errno_location
[call site]
01923
realloc
[call site]
01924
strncpy
[call site]
01925
strcmp
[call site]
01926
isalpha_c
[function]
[call site]
01927
isalnum_c
[function]
[call site]
01928
strncpy
[call site]
01929
hts_log
[function]
[call site]
01930
regfree
[call site]
01931
regcomp
[call site]
01932
hts_log
[function]
[call site]
01933
fastq_state_set
[function]
[call site]
01934
fastq_state_set
[function]
[call site]
01935
cram_set_option
[function]
[call site]
01936
hts_set_filter_expression
[function]
[call site]
01937
hts_filter_free
[function]
[call site]
01938
regfree
[call site]
01939
hts_filter_init
[function]
[call site]
01940
calloc
[call site]
01941
strlen
[call site]
01942
hts_malloc_ps
[function]
[call site]
01943
hts_add_sat2
[function]
[call site]
01944
hts_prod_sat2
[function]
[call site]
01945
hts_malloc
[function]
[call site]
01946
cram_set_voption
[function]
[call site]
01947
hts_set_opt
[function]
[call site]
01948
hts_opt_free
[function]
[call site]
01949
hts_opt_free
[function]
[call site]
01950
hclose_abruptly
[function]
[call site]
01951
hts_log
[function]
[call site]
01952
hclose_abruptly
[function]
[call site]
01953
hclose
[function]
[call site]
01954
abort
[call site]
01955
hts_close
[function]
[call site]
01956
__errno_location
[call site]
01957
bgzf_close
[function]
[call site]
01958
cram_eof
[function]
[call site]
01959
hts_log
[function]
[call site]
01960
cram_close
[function]
[call site]
01961
cram_update_curr_slice
[function]
[call site]
01962
cram_flush_container_mt
[function]
[call site]
01963
pthread_mutex_lock
[call site]
01964
reset_metrics
[function]
[call site]
01965
pthread_mutex_unlock
[call site]
01966
hts_tpool_process_flush
[function]
[call site]
01967
pthread_mutex_lock
[call site]
01968
pthread_mutex_unlock
[call site]
01969
cram_flush_container
[function]
[call site]
01970
cram_encode_container
[function]
[call site]
01971
pthread_mutex_lock
[call site]
01972
hts_log
[function]
[call site]
01973
hts_log
[function]
[call site]
01974
pthread_mutex_unlock
[call site]
01975
pthread_mutex_lock
[call site]
01976
pthread_mutex_unlock
[call site]
01977
cram_get_ref
[function]
[call site]
01978
pthread_mutex_lock
[call site]
01979
hts_log
[function]
[call site]
01980
pthread_mutex_unlock
[call site]
01981
pthread_mutex_lock
[call site]
01982
hts_log
[function]
[call site]
01983
cram_populate_ref
[function]
[call site]
01984
getenv
[call site]
01985
getenv
[call site]
01986
hts_log
[function]
[call site]
01987
sam_hrecs_find_type_id
[function]
[call site]
01988
sam_hrecs_find_key
[function]
[call site]
01989
hts_log
[function]
[call site]
01990
expand_cache_path
[function]
[call site]
01991
strchr
[call site]
01992
strncpy
[call site]
01993
strlen
[call site]
01994
strcpy
[call site]
01995
strtol
[call site]
01996
strlen
[call site]
01997
strncpy
[call site]
01998
strlen
[call site]
01999
strcpy
[call site]
02000
strlen
[call site]
02001
strcpy
[call site]
02002
stat
[call site]
02003
stat
[call site]
02004
bgzf_open
[function]
[call site]
02005
string_dup
[function]
[call site]
02006
bgzf_close
[function]
[call site]
02007
open_path_mfile
[function]
[call site]
02008
getenv
[call site]
02009
tokenise_search_path
[function]
[call site]
02010
strlen
[call site]
02011
strncmp
[call site]
02012
strncmp
[call site]
02013
strncmp
[call site]
02014
strncmp
[call site]
02015
strncmp
[call site]
02016
strncmp
[call site]
02017
strncmp
[call site]
02018
strncmp
[call site]
02019
strncmp
[call site]
02020
strncmp
[call site]
02021
find_file_url
[function]
[call site]
02022
expand_path
[function]
[call site]
02023
strlen
[call site]
02024
strlen
[call site]
02025
hts_log
[function]
[call site]
02026
strchr
[call site]
02027
strtol
[call site]
02028
hopen
[function]
[call site]
02029
__errno_location
[call site]
02030
__errno_location
[call site]
02031
strerror
[call site]
02032
hts_log
[function]
[call site]
02033
mfcreate
[function]
[call site]
02034
hread
[function]
[call site]
02035
mfwrite
[function]
[call site]
02036
realloc
[call site]
02037
hclose_abruptly
[function]
[call site]
02038
hclose
[function]
[call site]
02039
__errno_location
[call site]
02040
strerror
[call site]
02041
hts_log
[function]
[call site]
02042
mrewind
[function]
[call site]
02043
mfdestroy
[function]
[call site]
02044
strncmp
[call site]
02045
hisremote
[function]
[call site]
02046
find_file_url
[function]
[call site]
02047
find_file_dir
[function]
[call site]
02048
expand_path
[function]
[call site]
02049
is_file
[function]
[call site]
02050
stat
[call site]
02051
mfopen
[function]
[call site]
02052
fopen
[call site]
02053
mfreopen
[function]
[call site]
02054
strchr
[call site]
02055
strchr
[call site]
02056
strchr
[call site]
02057
strchr
[call site]
02058
strchr
[call site]
02059
strchr
[call site]
02060
strchr
[call site]
02061
mfcreate
[function]
[call site]
02062
mfmmap
[function]
[call site]
02063
mfload
[function]
[call site]
02067
stat
[call site]
02068
realloc
[call site]
02069
fread
[call site]
02070
feof
[call site]
02071
fseek
[call site]
02072
mfcreate
[function]
[call site]
02073
hts_log
[function]
[call site]
02074
fseek
[call site]
02075
strlen
[call site]
02076
strcpy
[call site]
02077
strrchr
[call site]
02078
find_file_dir
[function]
[call site]
02079
mfsteal
[function]
[call site]
02080
mfdetach
[function]
[call site]
02081
mfflush
[function]
[call site]
02082
fclose
[call site]
02083
mfdestroy
[function]
[call site]
02084
sam_hrecs_find_key
[function]
[call site]
02085
strstr
[call site]
02086
strncmp
[call site]
02087
hts_log
[function]
[call site]
02088
strncmp
[call site]
02089
bgzf_close
[function]
[call site]
02090
refs_load_fai
[function]
[call site]
02091
sanitise_SQ_lines
[function]
[call site]
02092
bgzf_close
[function]
[call site]
02093
refs2id
[function]
[call site]
02094
expand_cache_path
[function]
[call site]
02095
hts_log
[function]
[call site]
02096
mkdir_prefix
[function]
[call site]
02097
strrchr
[call site]
02098
is_directory
[function]
[call site]
02099
stat
[call site]
02100
mkdir
[call site]
02101
chmod
[call site]
02102
mkdir_prefix
[function]
[call site]
02103
mkdir
[call site]
02104
chmod
[call site]
02105
hts_open_tmpfile
[function]
[call site]
02106
getpid
[call site]
02107
time
[call site]
02108
clock
[call site]
02109
ks_clear
[function]
[call site]
02110
ksprintf
[function]
[call site]
02111
hopen
[function]
[call site]
02112
__errno_location
[call site]
02113
perror
[call site]
02114
hts_md5_init
[function]
[call site]
02115
hts_md5_reset
[function]
[call site]
02116
hclose_abruptly
[function]
[call site]
02117
unlink
[call site]
02118
hts_md5_update
[function]
[call site]
02119
body
[function]
[call site]
02120
body
[function]
[call site]
02121
hts_md5_final
[function]
[call site]
02122
body
[function]
[call site]
02123
body
[function]
[call site]
02124
hts_md5_destroy
[function]
[call site]
02125
hts_md5_hex
[function]
[call site]
02126
strncmp
[call site]
02127
hts_log
[function]
[call site]
02128
hclose_abruptly
[function]
[call site]
02129
unlink
[call site]
02130
hwrite
[function]
[call site]
02131
hclose
[function]
[call site]
02132
chmod
[call site]
02133
rename
[call site]
02134
__errno_location
[call site]
02135
strerror
[call site]
02136
hts_log
[function]
[call site]
02137
unlink
[call site]
02138
hts_log
[function]
[call site]
02139
hts_log
[function]
[call site]
02140
pthread_mutex_unlock
[call site]
02141
pthread_mutex_unlock
[call site]
02142
cram_ref_incr_locked
[function]
[call site]
02143
cram_ref_incr_locked
[function]
[call site]
02144
cram_ref_load
[function]
[call site]
02145
__assert_fail
[call site]
02146
__assert_fail
[call site]
02147
ref_entry_free_seq
[function]
[call site]
02148
strcmp
[call site]
02149
bgzf_close
[function]
[call site]
02150
bgzf_open_ref
[function]
[call site]
02151
load_ref_portion
[function]
[call site]
02152
bgzf_useek
[function]
[call site]
02153
hseek
[function]
[call site]
02154
bgzf_read_block
[function]
[call site]
02155
bgzf_seek_common
[function]
[call site]
02156
pthread_mutex_lock
[call site]
02157
pthread_cond_signal
[call site]
02158
hts_tpool_wake_dispatch
[function]
[call site]
02159
pthread_cond_wait
[call site]
02160
pthread_cond_signal
[call site]
02161
abort
[call site]
02162
__errno_location
[call site]
02163
pthread_mutex_unlock
[call site]
02164
pthread_mutex_unlock
[call site]
02165
hseek
[function]
[call site]
02166
bgzf_read_block
[function]
[call site]
02167
__assert_fail
[call site]
02168
perror
[call site]
02169
bgzf_read
[function]
[call site]
02170
__assert_fail
[call site]
02171
bgzf_read_block
[function]
[call site]
02172
hts_log
[function]
[call site]
02173
bgzf_htell
[function]
[call site]
02174
hts_log
[function]
[call site]
02175
bgzf_htell
[function]
[call site]
02176
perror
[call site]
02177
isspace_c
[function]
[call site]
02178
isspace_c
[function]
[call site]
02179
isspace_c
[function]
[call site]
02180
hts_log
[function]
[call site]
02181
toupper_c
[function]
[call site]
02182
toupper
[call site]
02183
pthread_mutex_unlock
[call site]
02184
pthread_mutex_unlock
[call site]
02185
cram_ref_incr_locked
[function]
[call site]
02186
pthread_mutex_unlock
[call site]
02187
pthread_mutex_unlock
[call site]
02188
pthread_mutex_unlock
[call site]
02189
pthread_mutex_unlock
[call site]
02190
strcmp
[call site]
02191
bgzf_close
[function]
[call site]
02192
bgzf_open_ref
[function]
[call site]
02193
pthread_mutex_unlock
[call site]
02194
pthread_mutex_unlock
[call site]
02195
load_ref_portion
[function]
[call site]
02196
pthread_mutex_unlock
[call site]
02197
pthread_mutex_unlock
[call site]
02198
pthread_mutex_unlock
[call site]
02199
pthread_mutex_unlock
[call site]
02200
hts_log
[function]
[call site]
02201
hts_log
[function]
[call site]
02202
pthread_mutex_lock
[call site]
02203
pthread_mutex_unlock
[call site]
02204
hts_log
[function]
[call site]
02205
hts_log
[function]
[call site]
02206
hts_log
[function]
[call site]
02207
hts_log
[function]
[call site]
02208
pthread_mutex_lock
[call site]
02209
pthread_mutex_unlock
[call site]
02210
validate_md5
[function]
[call site]
02211
sam_hrecs_find_type_id
[function]
[call site]
02212
sam_hrecs_find_key
[function]
[call site]
02213
hts_md5_init
[function]
[call site]
02214
hts_md5_update
[function]
[call site]
02215
hts_md5_final
[function]
[call site]
02216
hts_md5_destroy
[function]
[call site]
02217
hts_md5_hex
[function]
[call site]
02218
strcmp
[call site]
02219
hts_log
[function]
[call site]
02220
hts_log
[function]
[call site]
02221
cram_ref_incr
[function]
[call site]
02222
pthread_mutex_lock
[call site]
02223
cram_ref_incr_locked
[function]
[call site]
02224
pthread_mutex_unlock
[call site]
02225
cram_get_ref
[function]
[call site]
02226
validate_md5
[function]
[call site]
02227
hts_log
[function]
[call site]
02228
__assert_fail
[call site]
02229
lossy_read_names
[function]
[call site]
02230
kh_init_m_s2u64
[function]
[call site]
02231
calloc
[call site]
02232
expected_template_count
[function]
[call site]
02233
bam_aux_get
[function]
[call site]
02234
bam_aux_first
[function]
[call site]
02235
__errno_location
[call site]
02236
skip_aux
[function]
[call site]
02237
aux_type2size
[function]
[call site]
02238
memchr
[call site]
02239
aux_type2size
[function]
[call site]
02240
le_to_u32
[function]
[call site]
02241
bam_aux_next
[function]
[call site]
02242
skip_aux
[function]
[call site]
02243
__errno_location
[call site]
02244
hts_log
[function]
[call site]
02245
__errno_location
[call site]
02246
hts_log
[function]
[call site]
02247
__errno_location
[call site]
02248
bam_data_end
[function]
[call site]
02249
bam_aux2i_end
[function]
[call site]
02250
__errno_location
[call site]
02251
__errno_location
[call site]
02252
__errno_location
[call site]
02253
le_to_i16
[function]
[call site]
02254
le_to_u16
[function]
[call site]
02255
__errno_location
[call site]
02256
le_to_u16
[function]
[call site]
02257
__errno_location
[call site]
02258
le_to_i32
[function]
[call site]
02259
le_to_u32
[function]
[call site]
02260
__errno_location
[call site]
02261
le_to_u32
[function]
[call site]
02262
__errno_location
[call site]
02263
bam_aux_get
[function]
[call site]
02264
kh_put_m_s2u64
[function]
[call site]
02265
kh_resize_m_s2u64
[function]
[call site]
02266
__errno_location
[call site]
02267
realloc
[call site]
02268
__ac_FNV1a_hash_string
[function]
[call site]
02269
strcmp
[call site]
02270
kh_get_m_s2u64
[function]
[call site]
02271
kh_destroy_m_s2u64
[function]
[call site]
02272
cram_generate_reference
[function]
[call site]
02273
extend_ref
[function]
[call site]
02274
realloc
[call site]
02275
hts_realloc_p
[function]
[call site]
02276
hts_log
[function]
[call site]
02277
cram_add_to_ref
[function]
[call site]
02278
bam_aux_get
[function]
[call site]
02279
cram_add_to_ref_MD
[function]
[call site]
02280
bam_cigar2rlen
[function]
[call site]
02281
extend_ref
[function]
[call site]
02282
__ctype_b_loc
[call site]
02283
hts_str2uint
[function]
[call site]
02284
extend_ref
[function]
[call site]
02285
next_cigar_op
[function]
[call site]
02286
hts_log
[function]
[call site]
02287
__ctype_b_loc
[call site]
02288
extend_ref
[function]
[call site]
02289
next_cigar_op
[function]
[call site]
02290
hts_log
[function]
[call site]
02291
extend_ref
[function]
[call site]
02292
next_cigar_op
[function]
[call site]
02293
hts_log
[function]
[call site]
02294
extend_ref
[function]
[call site]
02295
extend_ref
[function]
[call site]
02296
hts_log
[function]
[call site]
02297
hts_log
[function]
[call site]
02298
pthread_mutex_lock
[call site]
02299
pthread_mutex_unlock
[call site]
02300
pthread_mutex_lock
[call site]
02301
pthread_mutex_unlock
[call site]
02302
cram_ref_decr
[function]
[call site]
02303
pthread_mutex_lock
[call site]
02304
cram_ref_decr_locked
[function]
[call site]
02305
__assert_fail
[call site]
02306
ref_entry_free_seq
[function]
[call site]
02307
pthread_mutex_unlock
[call site]
02308
cram_get_ref
[function]
[call site]
02309
hts_log
[function]
[call site]
02310
validate_md5
[function]
[call site]
02311
process_one_read
[function]
[call site]
02312
bam_aux_get
[function]
[call site]
02313
bam_aux_get
[function]
[call site]
02314
cram_stats_add
[function]
[call site]
02315
kh_init_m_i2i
[function]
[call site]
02316
kh_put_m_i2i
[function]
[call site]
02317
kh_resize_m_i2i
[function]
[call site]
02318
cram_stats_add
[function]
[call site]
02319
cram_stats_add
[function]
[call site]
02320
block_grow
[function]
[call site]
02321
block_resize
[function]
[call site]
02322
block_resize_exact
[function]
[call site]
02323
realloc
[call site]
02324
block_grow
[function]
[call site]
02325
nibble2base
[function]
[call site]
02326
hts_log
[function]
[call site]
02327
hts_realloc_p
[function]
[call site]
02328
hts_log
[function]
[call site]
02329
kputuw
[function]
[call site]
02330
ks_resize
[function]
[call site]
02331
ks_resize
[function]
[call site]
02332
kputc
[function]
[call site]
02333
ks_resize
[function]
[call site]
02334
cram_add_substitution
[function]
[call site]
02335
cram_stats_add
[function]
[call site]
02336
cram_stats_add
[function]
[call site]
02337
cram_stats_add
[function]
[call site]
02338
block_append_char
[function]
[call site]
02339
block_grow
[function]
[call site]
02340
cram_add_feature
[function]
[call site]
02341
hts_realloc_p
[function]
[call site]
02342
cram_stats_add
[function]
[call site]
02343
cram_stats_add
[function]
[call site]
02344
cram_stats_add
[function]
[call site]
02345
cram_add_bases
[function]
[call site]
02346
cram_add_feature
[function]
[call site]
02347
cram_add_base
[function]
[call site]
02348
cram_stats_add
[function]
[call site]
02349
cram_stats_add
[function]
[call site]
02350
block_append_char
[function]
[call site]
02351
cram_add_feature
[function]
[call site]
02352
cram_add_base
[function]
[call site]
02353
kputuw
[function]
[call site]
02354
kputc_
[function]
[call site]
02355
ks_resize
[function]
[call site]
02356
kputsn
[function]
[call site]
02357
ks_resize
[function]
[call site]
02358
cram_add_deletion
[function]
[call site]
02359
cram_stats_add
[function]
[call site]
02360
cram_add_feature
[function]
[call site]
02361
cram_add_skip
[function]
[call site]
02362
cram_stats_add
[function]
[call site]
02363
cram_add_feature
[function]
[call site]
02364
cram_add_insertion
[function]
[call site]
02365
cram_stats_add
[function]
[call site]
02366
block_append
[function]
[call site]
02367
block_grow
[function]
[call site]
02368
block_append_char
[function]
[call site]
02369
block_append_char
[function]
[call site]
02370
cram_add_feature
[function]
[call site]
02371
cram_add_quality
[function]
[call site]
02372
cram_stats_add
[function]
[call site]
02373
block_append_char
[function]
[call site]
02374
cram_add_feature
[function]
[call site]
02375
cram_add_softclip
[function]
[call site]
02376
block_append
[function]
[call site]
02377
block_append_char
[function]
[call site]
02378
block_append
[function]
[call site]
02379
block_append_char
[function]
[call site]
02380
block_append_char
[function]
[call site]
02381
cram_add_feature
[function]
[call site]
02382
cram_add_quality
[function]
[call site]
02383
cram_add_quality
[function]
[call site]
02384
cram_add_hardclip
[function]
[call site]
02385
cram_stats_add
[function]
[call site]
02386
cram_add_feature
[function]
[call site]
02387
cram_add_pad
[function]
[call site]
02388
cram_stats_add
[function]
[call site]
02389
cram_add_feature
[function]
[call site]
02390
hts_log
[function]
[call site]
02391
hts_log
[function]
[call site]
02392
cram_stats_add
[function]
[call site]
02393
kputuw
[function]
[call site]
02394
cram_stats_add
[function]
[call site]
02395
cram_encode_aux
[function]
[call site]
02396
bam_data_end
[function]
[call site]
02397
hts_malloc_ps
[function]
[call site]
02398
hts_add_sat2
[function]
[call site]
02399
hts_prod_sat2
[function]
[call site]
02400
hts_malloc
[function]
[call site]
02401
hts_log
[function]
[call site]
02402
sam_hrecs_find_rg
[function]
[call site]
02403
kh_get_m_s2i
[function]
[call site]
02404
hts_log
[function]
[call site]
02405
strncasecmp
[call site]
02406
hts_log
[function]
[call site]
02407
bam_aux2i_end
[function]
[call site]
02408
hts_log
[function]
[call site]
02409
block_append
[function]
[call site]
02410
kh_put_m_tagmap
[function]
[call site]
02411
kh_resize_m_tagmap
[function]
[call site]
02412
realloc
[call site]
02413
pthread_mutex_lock
[call site]
02414
kh_put_m_metrics
[function]
[call site]
02415
kh_resize_m_metrics
[function]
[call site]
02416
realloc
[call site]
02417
pthread_mutex_unlock
[call site]
02418
cram_new_metrics
[function]
[call site]
02419
kh_del_m_metrics
[function]
[call site]
02420
pthread_mutex_unlock
[call site]
02421
pthread_mutex_unlock
[call site]
02422
calloc
[call site]
02423
cram_encoder_init
[function]
[call site]
02424
cram_encoding2str
[function]
[call site]
02425
hts_log
[function]
[call site]
02426
cram_encoding2str
[function]
[call site]
02427
hts_log
[function]
[call site]
02428
abort
[call site]
02429
cram_stats_add
[function]
[call site]
02430
cram_stats_encoding
[function]
[call site]
02431
hts_realloc_p
[function]
[call site]
02432
hts_realloc_p
[function]
[call site]
02433
hts_realloc_p
[function]
[call site]
02434
hts_realloc_p
[function]
[call site]
02435
__assert_fail
[call site]
02436
cram_encoder_init
[function]
[call site]
02437
cram_stats_add
[function]
[call site]
02438
cram_stats_encoding
[function]
[call site]
02439
cram_encoder_init
[function]
[call site]
02440
cram_stats_add
[function]
[call site]
02441
cram_stats_encoding
[function]
[call site]
02442
cram_encoder_init
[function]
[call site]
02443
cram_encoder_init
[function]
[call site]
02444
hts_log
[function]
[call site]
02445
pthread_mutex_lock
[call site]
02446
pthread_mutex_unlock
[call site]
02447
cram_new_block
[function]
[call site]
02448
block_append_char
[function]
[call site]
02449
cram_new_block
[function]
[call site]
02450
block_append
[function]
[call site]
02451
cram_new_block
[function]
[call site]
02452
block_append
[function]
[call site]
02453
cram_new_block
[function]
[call site]
02454
block_append
[function]
[call site]
02455
cram_new_block
[function]
[call site]
02456
hts_log
[function]
[call site]
02457
cram_new_block
[function]
[call site]
02458
hts_log
[function]
[call site]
02459
hts_log
[function]
[call site]
02460
block_append_char
[function]
[call site]
02461
kh_put_m_s2i
[function]
[call site]
02462
kh_resize_m_s2i
[function]
[call site]
02463
__ac_FNV1a_hash_string
[function]
[call site]
02464
string_ndup
[function]
[call site]
02465
cram_stats_add
[function]
[call site]
02466
sam_hrecs_find_rg
[function]
[call site]
02467
cram_stats_add
[function]
[call site]
02468
block_grow
[function]
[call site]
02469
block_grow
[function]
[call site]
02470
cram_stats_add
[function]
[call site]
02471
kh_put_m_s2i
[function]
[call site]
02472
string_ndup
[function]
[call site]
02473
cram_stats_add
[function]
[call site]
02474
cram_stats_add
[function]
[call site]
02475
cram_stats_del
[function]
[call site]
02476
__assert_fail
[call site]
02477
kh_get_m_i2i
[function]
[call site]
02478
kh_del_m_i2i
[function]
[call site]
02479
hts_log
[function]
[call site]
02480
cram_stats_del
[function]
[call site]
02481
cram_stats_del
[function]
[call site]
02482
cram_stats_del
[function]
[call site]
02483
cram_stats_add
[function]
[call site]
02484
cram_stats_del
[function]
[call site]
02485
cram_stats_add
[function]
[call site]
02486
cram_stats_add
[function]
[call site]
02487
cram_stats_add
[function]
[call site]
02488
cram_stats_add
[function]
[call site]
02489
cram_stats_add
[function]
[call site]
02490
cram_stats_add
[function]
[call site]
02491
cram_stats_add
[function]
[call site]
02492
cram_stats_add
[function]
[call site]
02493
add_read_names
[function]
[call site]
02494
block_append
[function]
[call site]
02495
cram_stats_add
[function]
[call site]
02496
hts_prod_sat2
[function]
[call site]
02497
hts_calloc
[function]
[call site]
02498
__assert_fail
[call site]
02499
cram_ref_decr
[function]
[call site]
02500
pthread_mutex_lock
[call site]
02501
pthread_mutex_unlock
[call site]
02502
cram_stats_encoding
[function]
[call site]
02503
pthread_mutex_lock
[call site]
02504
pthread_mutex_unlock
[call site]
02505
hts_log
[function]
[call site]
02506
hts_md5_init
[function]
[call site]
02507
hts_md5_update
[function]
[call site]
02508
hts_md5_final
[function]
[call site]
02509
hts_md5_destroy
[function]
[call site]
02510
cram_stats_encoding
[function]
[call site]
02511
cram_encoder_init
[function]
[call site]
02512
cram_stats_encoding
[function]
[call site]
02513
cram_encoder_init
[function]
[call site]
02514
cram_stats_encoding
[function]
[call site]
02515
cram_encoder_init
[function]
[call site]
02516
cram_encoder_init
[function]
[call site]
02517
cram_encoder_init
[function]
[call site]
02518
cram_stats_encoding
[function]
[call site]
02519
cram_encoder_init
[function]
[call site]
02520
cram_stats_encoding
[function]
[call site]
02521
cram_encoder_init
[function]
[call site]
02522
cram_stats_encoding
[function]
[call site]
02523
cram_encoder_init
[function]
[call site]
02524
cram_stats_encoding
[function]
[call site]
02525
cram_encoder_init
[function]
[call site]
02526
cram_stats_encoding
[function]
[call site]
02527
cram_encoder_init
[function]
[call site]
02528
cram_stats_encoding
[function]
[call site]
02529
cram_encoder_init
[function]
[call site]
02530
cram_stats_encoding
[function]
[call site]
02531
cram_encoder_init
[function]
[call site]
02532
cram_stats_encoding
[function]
[call site]
02533
cram_encoder_init
[function]
[call site]
02534
cram_stats_encoding
[function]
[call site]
02535
cram_encoder_init
[function]
[call site]
02536
cram_stats_encoding
[function]
[call site]
02537
cram_encoder_init
[function]
[call site]
02538
cram_stats_encoding
[function]
[call site]
02539
cram_encoder_init
[function]
[call site]
02540
cram_stats_encoding
[function]
[call site]
02541
cram_encoder_init
[function]
[call site]
02542
cram_stats_encoding
[function]
[call site]
02543
cram_encoder_init
[function]
[call site]
02544
cram_encoder_init
[function]
[call site]
02545
cram_stats_encoding
[function]
[call site]
02546
cram_encoder_init
[function]
[call site]
02547
cram_stats_encoding
[function]
[call site]
02548
cram_encoder_init
[function]
[call site]
02549
cram_stats_encoding
[function]
[call site]
02550
cram_encoder_init
[function]
[call site]
02551
cram_stats_encoding
[function]
[call site]
02552
cram_encoder_init
[function]
[call site]
02553
cram_stats_encoding
[function]
[call site]
02554
cram_encoder_init
[function]
[call site]
02555
cram_stats_encoding
[function]
[call site]
02556
cram_encoder_init
[function]
[call site]
02557
cram_stats_encoding
[function]
[call site]
02558
cram_encoder_init
[function]
[call site]
02559
cram_stats_encoding
[function]
[call site]
02560
cram_encoder_init
[function]
[call site]
02561
cram_encoder_init
[function]
[call site]
02562
cram_encoder_init
[function]
[call site]
02563
cram_encoder_init
[function]
[call site]
02564
cram_encoder_init
[function]
[call site]
02565
hts_log
[function]
[call site]
02566
cram_encode_slice
[function]
[call site]
02567
hts_prod_sat2
[function]
[call site]
02568
hts_calloc_ps
[function]
[call site]
02569
hts_add_sat2
[function]
[call site]
02570
hts_calloc
[function]
[call site]
02571
hts_malloc_p
[function]
[call site]
02572
cram_new_block
[function]
[call site]
02573
cram_new_block
[function]
[call site]
02574
cram_new_block
[function]
[call site]
02575
block_append
[function]
[call site]
02576
cram_allocate_block
[function]
[call site]
02577
cram_new_block
[function]
[call site]
02578
cram_new_block
[function]
[call site]
02579
cram_allocate_block
[function]
[call site]
02580
cram_allocate_block
[function]
[call site]
02581
cram_encode_slice_read
[function]
[call site]
02582
hts_log
[function]
[call site]
02583
cram_free_block
[function]
[call site]
02584
cram_free_block
[function]
[call site]
02585
cram_free_block
[function]
[call site]
02586
cram_free_block
[function]
[call site]
02587
cram_compress_slice
[function]
[call site]
02588
cram_compress_block2
[function]
[call site]
02589
cram_compress_block3
[function]
[call site]
02590
pthread_mutex_lock
[call site]
02591
pthread_mutex_unlock
[call site]
02592
cram_compress_by_method
[function]
[call site]
02593
zlib_mem_deflate
[function]
[call site]
02594
deflateInit2_
[call site]
02595
hts_log
[function]
[call site]
02596
hts_log
[function]
[call site]
02597
deflate
[call site]
02598
hts_log
[function]
[call site]
02599
deflate
[call site]
02600
hts_log
[function]
[call site]
02601
deflateEnd
[call site]
02602
hts_log
[function]
[call site]
02603
BZ2_bzBuffToBuffCompress
[call site]
02604
fqz_compress
[function]
[call site]
02605
compress_block_fqz2f
[function]
[call site]
02606
fqz_pick_parameters
[function]
[call site]
02607
calloc
[call site]
02608
fqz_qual_stats
[function]
[call site]
02609
calloc
[call site]
02610
memcmp
[call site]
02611
fast_log
[function]
[call site]
02612
fast_log
[function]
[call site]
02613
fast_log
[function]
[call site]
02614
fast_log
[function]
[call site]
02615
fast_log
[function]
[call site]
02616
fast_log
[function]
[call site]
02617
fast_log
[function]
[call site]
02618
log
[call site]
02619
log
[call site]
02620
log
[call site]
02621
log
[call site]
02622
log
[call site]
02623
log
[call site]
02624
log
[call site]
02625
log
[call site]
02626
log
[call site]
02627
var_put_u32
[function]
[call site]
02628
var_put_u32_safe
[function]
[call site]
02629
fqz_store_parameters
[function]
[call site]
02630
store_array
[function]
[call site]
02631
fqz_store_parameters1
[function]
[call site]
02632
store_array
[function]
[call site]
02633
store_array
[function]
[call site]
02634
store_array
[function]
[call site]
02635
fqz_create_models
[function]
[call site]
02636
RC_SetOutput
[function]
[call site]
02637
RC_SetOutputEnd
[function]
[call site]
02638
RC_StartEncode
[function]
[call site]
02639
compress_new_read
[function]
[call site]
02640
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02641
RC_Encode
[function]
[call site]
02642
RC_ShiftLowCheck
[function]
[call site]
02643
SIMPLE_MODEL256_normalize
[function]
[call site]
02644
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02645
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02646
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02647
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02648
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02649
SIMPLE_MODEL2_normalize
[function]
[call site]
02650
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02651
memcmp
[call site]
02652
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02653
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02654
mm_prefetch
[function]
[call site]
02655
fqz_update_ctx
[function]
[call site]
02656
mm_prefetch
[function]
[call site]
02657
fqz_update_ctx
[function]
[call site]
02658
mm_prefetch
[function]
[call site]
02659
fqz_update_ctx
[function]
[call site]
02660
mm_prefetch
[function]
[call site]
02661
fqz_update_ctx
[function]
[call site]
02662
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02663
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02664
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02665
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02666
mm_prefetch
[function]
[call site]
02667
fqz_update_ctx
[function]
[call site]
02668
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02669
RC_FinishEncode
[function]
[call site]
02670
RC_ShiftLowCheck
[function]
[call site]
02671
RC_OutSize
[function]
[call site]
02672
fqz_destroy_models
[function]
[call site]
02673
fqz_free_parameters
[function]
[call site]
02674
lzma_mem_deflate
[function]
[call site]
02675
lzma_stream_buffer_bound
[call site]
02676
lzma_easy_buffer_encode
[call site]
02677
rans_compress
[function]
[call site]
02678
rans_compress_O1
[function]
[call site]
02679
rans_compress_O0
[function]
[call site]
02680
hist8
[function]
[call site]
02681
htscodecs_tls_calloc
[function]
[call site]
02682
htscodecs_tls_free
[function]
[call site]
02683
__assert_fail
[call site]
02684
RansEncSymbolInit
[function]
[call site]
02685
__assert_fail
[call site]
02686
__assert_fail
[call site]
02687
RansEncInit
[function]
[call site]
02688
RansEncInit
[function]
[call site]
02689
RansEncInit
[function]
[call site]
02690
RansEncInit
[function]
[call site]
02691
RansEncPutSymbol
[function]
[call site]
02692
RansEncPutSymbol
[function]
[call site]
02693
RansEncPutSymbol
[function]
[call site]
02694
RansEncPutSymbol
[function]
[call site]
02695
RansEncPutSymbol
[function]
[call site]
02696
RansEncPutSymbol
[function]
[call site]
02697
RansEncPutSymbol
[function]
[call site]
02698
RansEncFlush
[function]
[call site]
02699
RansEncFlush
[function]
[call site]
02700
RansEncFlush
[function]
[call site]
02701
RansEncFlush
[function]
[call site]
02702
htscodecs_tls_alloc
[function]
[call site]
02703
hist1_4
[function]
[call site]
02704
htscodecs_tls_calloc
[function]
[call site]
02705
htscodecs_tls_free
[function]
[call site]
02706
RansEncSymbolInit
[function]
[call site]
02707
__assert_fail
[call site]
02708
RansEncInit
[function]
[call site]
02709
RansEncInit
[function]
[call site]
02710
RansEncInit
[function]
[call site]
02711
RansEncInit
[function]
[call site]
02712
RansEncPutSymbol
[function]
[call site]
02713
RansEncPutSymbol4
[function]
[call site]
02714
__assert_fail
[call site]
02715
__assert_fail
[call site]
02716
__assert_fail
[call site]
02717
__assert_fail
[call site]
02718
RansEncPutSymbol
[function]
[call site]
02719
RansEncPutSymbol
[function]
[call site]
02720
RansEncPutSymbol
[function]
[call site]
02721
RansEncPutSymbol
[function]
[call site]
02722
RansEncFlush
[function]
[call site]
02723
RansEncFlush
[function]
[call site]
02724
RansEncFlush
[function]
[call site]
02725
RansEncFlush
[function]
[call site]
02726
htscodecs_tls_free
[function]
[call site]
02727
rans_compress_O0
[function]
[call site]
02728
rans_compress_4x16
[function]
[call site]
02729
rans_compress_to_4x16
[function]
[call site]
02730
rans_compress_bound_4x16
[function]
[call site]
02731
var_put_u32
[function]
[call site]
02732
rans_compress_to_4x16
[function]
[call site]
02733
realloc
[call site]
02734
var_put_u32
[function]
[call site]
02735
var_put_u32
[function]
[call site]
02736
var_put_u32
[function]
[call site]
02737
hts_pack
[function]
[call site]
02738
var_put_u32
[function]
[call site]
02739
hts_rle_encode
[function]
[call site]
02740
rle_find_syms
[function]
[call site]
02741
var_put_u32
[function]
[call site]
02742
var_put_u32
[function]
[call site]
02743
var_put_u32
[function]
[call site]
02744
rans_enc_func
[function]
[call site]
02745
pthread_once
[call site]
02746
htscodecs_tls_cpu_init
[function]
[call site]
02747
strerror
[call site]
02748
fprintf
[call site]
02749
fprintf
[call site]
02750
var_put_u32
[function]
[call site]
02751
var_put_u32
[function]
[call site]
02752
var_put_u32
[function]
[call site]
02753
rans_enc_func
[function]
[call site]
02754
arith_compress_to
[function]
[call site]
02755
arith_compress_bound
[function]
[call site]
02756
var_put_u32
[function]
[call site]
02757
var_put_u32
[function]
[call site]
02758
arith_compress_to
[function]
[call site]
02759
arith_compress_to
[function]
[call site]
02760
var_put_u32
[function]
[call site]
02761
var_put_u32
[function]
[call site]
02762
hts_pack
[function]
[call site]
02763
var_put_u32
[function]
[call site]
02764
BZ2_bzBuffToBuffCompress
[call site]
02765
arith_compress_O0_RLE
[function]
[call site]
02766
arith_compress_bound
[function]
[call site]
02767
SIMPLE_MODEL256_init
[function]
[call site]
02768
htscodecs_tls_alloc
[function]
[call site]
02769
SIMPLE_MODEL258_init
[function]
[call site]
02770
RC_SetOutput
[function]
[call site]
02771
RC_SetOutputEnd
[function]
[call site]
02772
RC_StartEncode
[function]
[call site]
02773
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02774
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02775
SIMPLE_MODEL258_normalize
[function]
[call site]
02776
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02777
RC_FinishEncode
[function]
[call site]
02778
htscodecs_tls_free
[function]
[call site]
02779
RC_OutSize
[function]
[call site]
02780
htscodecs_tls_free
[function]
[call site]
02781
arith_compress_O1_RLE
[function]
[call site]
02782
arith_compress_bound
[function]
[call site]
02783
htscodecs_tls_alloc
[function]
[call site]
02784
SIMPLE_MODEL256_init
[function]
[call site]
02785
htscodecs_tls_alloc
[function]
[call site]
02786
htscodecs_tls_free
[function]
[call site]
02787
SIMPLE_MODEL258_init
[function]
[call site]
02788
RC_SetOutput
[function]
[call site]
02789
RC_SetOutputEnd
[function]
[call site]
02790
RC_StartEncode
[function]
[call site]
02791
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02792
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02793
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02794
RC_FinishEncode
[function]
[call site]
02795
htscodecs_tls_free
[function]
[call site]
02796
htscodecs_tls_free
[function]
[call site]
02797
RC_OutSize
[function]
[call site]
02798
htscodecs_tls_free
[function]
[call site]
02799
htscodecs_tls_free
[function]
[call site]
02800
arith_compress_O1
[function]
[call site]
02801
arith_compress_bound
[function]
[call site]
02802
htscodecs_tls_alloc
[function]
[call site]
02803
SIMPLE_MODEL256_init
[function]
[call site]
02804
RC_SetOutput
[function]
[call site]
02805
RC_SetOutputEnd
[function]
[call site]
02806
RC_StartEncode
[function]
[call site]
02807
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02808
RC_FinishEncode
[function]
[call site]
02809
htscodecs_tls_free
[function]
[call site]
02810
RC_OutSize
[function]
[call site]
02811
htscodecs_tls_free
[function]
[call site]
02812
arith_compress_O0
[function]
[call site]
02813
arith_compress_bound
[function]
[call site]
02814
SIMPLE_MODEL256_init
[function]
[call site]
02815
RC_SetOutput
[function]
[call site]
02816
RC_SetOutputEnd
[function]
[call site]
02817
RC_StartEncode
[function]
[call site]
02818
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02819
RC_FinishEncode
[function]
[call site]
02820
RC_OutSize
[function]
[call site]
02821
tok3_encode_names
[function]
[call site]
02822
create_context
[function]
[call site]
02823
build_trie
[function]
[call site]
02824
calloc
[call site]
02825
pool_create
[function]
[call site]
02826
pool_alloc
[function]
[call site]
02827
new_pool
[function]
[call site]
02828
realloc
[call site]
02829
free_context
[function]
[call site]
02830
free_context
[function]
[call site]
02831
encode_name
[function]
[call site]
02832
search_trie
[function]
[call site]
02833
__ctype_b_loc
[call site]
02834
__ctype_b_loc
[call site]
02835
__ctype_b_loc
[call site]
02836
__ctype_b_loc
[call site]
02837
__ctype_b_loc
[call site]
02838
calloc
[call site]
02839
__ctype_b_loc
[call site]
02840
strlen
[call site]
02841
encode_token_dup
[function]
[call site]
02842
encode_token_int
[function]
[call site]
02843
encode_token_type
[function]
[call site]
02844
descriptor_grow
[function]
[call site]
02845
realloc
[call site]
02846
descriptor_grow
[function]
[call site]
02847
encode_token_diff
[function]
[call site]
02848
encode_token_int
[function]
[call site]
02849
encode_token_char
[function]
[call site]
02850
encode_token_type
[function]
[call site]
02851
descriptor_grow
[function]
[call site]
02852
memcmp
[call site]
02853
encode_token_match
[function]
[call site]
02854
encode_token_type
[function]
[call site]
02855
encode_token_alpha
[function]
[call site]
02856
encode_token_type
[function]
[call site]
02857
descriptor_grow
[function]
[call site]
02858
encode_token_alpha
[function]
[call site]
02859
__ctype_b_loc
[call site]
02860
__ctype_b_loc
[call site]
02861
__ctype_b_loc
[call site]
02862
memcmp
[call site]
02863
encode_token_match
[function]
[call site]
02864
encode_token_alpha
[function]
[call site]
02865
encode_token_alpha
[function]
[call site]
02866
__ctype_b_loc
[call site]
02867
encode_token_match
[function]
[call site]
02868
encode_token_int1
[function]
[call site]
02869
encode_token_type
[function]
[call site]
02870
descriptor_grow
[function]
[call site]
02871
encode_token_int1_
[function]
[call site]
02872
descriptor_grow
[function]
[call site]
02873
encode_token_int
[function]
[call site]
02874
encode_token_int1_
[function]
[call site]
02875
encode_token_int
[function]
[call site]
02876
__ctype_b_loc
[call site]
02877
__ctype_b_loc
[call site]
02878
encode_token_match
[function]
[call site]
02879
encode_token_int1
[function]
[call site]
02880
encode_token_int
[function]
[call site]
02881
encode_token_int
[function]
[call site]
02882
encode_token_match
[function]
[call site]
02883
encode_token_char
[function]
[call site]
02884
encode_token_char
[function]
[call site]
02885
encode_token_end
[function]
[call site]
02886
encode_token_type
[function]
[call site]
02887
realloc
[call site]
02888
free_context
[function]
[call site]
02889
arith_compress_bound
[function]
[call site]
02890
free_context
[function]
[call site]
02891
compress
[function]
[call site]
02892
arith_encode
[function]
[call site]
02893
arith_compress_to
[function]
[call site]
02894
var_put_u32
[function]
[call site]
02895
rans_encode
[function]
[call site]
02896
rans_compress_to_4x16
[function]
[call site]
02897
var_put_u32
[function]
[call site]
02898
free_context
[function]
[call site]
02899
memcmp
[call site]
02900
free_context
[function]
[call site]
02901
free_context
[function]
[call site]
02902
pthread_mutex_lock
[call site]
02903
pthread_mutex_unlock
[call site]
02904
pthread_mutex_unlock
[call site]
02905
cram_compress_by_method
[function]
[call site]
02906
cram_block_method2str
[function]
[call site]
02907
hts_log
[function]
[call site]
02908
pthread_mutex_lock
[call site]
02909
pthread_mutex_unlock
[call site]
02910
cram_compress_block3
[function]
[call site]
02911
cram_compress_by_method
[function]
[call site]
02912
hts_log
[function]
[call site]
02913
cram_block_method2str
[function]
[call site]
02914
hts_log
[function]
[call site]
02915
pthread_mutex_lock
[call site]
02916
pthread_mutex_unlock
[call site]
02917
cram_compress_block2
[function]
[call site]
02918
cram_compress_block2
[function]
[call site]
02919
cram_compress_block2
[function]
[call site]
02920
cram_compress_block2
[function]
[call site]
02921
cram_compress_block2
[function]
[call site]
02922
cram_compress_block2
[function]
[call site]
02923
cram_compress_block2
[function]
[call site]
02924
cram_compress_block2
[function]
[call site]
02925
cram_compress_block2
[function]
[call site]
02926
cram_compress_block2
[function]
[call site]
02927
cram_compress_block2
[function]
[call site]
02928
cram_compress_block2
[function]
[call site]
02929
cram_compress_block2
[function]
[call site]
02930
cram_compress_block2
[function]
[call site]
02931
cram_compress_block2
[function]
[call site]
02932
hts_realloc_p
[function]
[call site]
02933
cram_free_block
[function]
[call site]
02934
cram_encode_slice_header
[function]
[call site]
02935
cram_new_block
[function]
[call site]
02936
hts_malloc_pse
[function]
[call site]
02937
hts_add_sat2
[function]
[call site]
02938
hts_prod_sat2
[function]
[call site]
02939
hts_add_sat2
[function]
[call site]
02940
hts_malloc
[function]
[call site]
02941
cram_free_block
[function]
[call site]
02942
hts_log
[function]
[call site]
02943
cram_free_block
[function]
[call site]
02944
__assert_fail
[call site]
02945
cram_encode_compression_header
[function]
[call site]
02946
cram_new_block
[function]
[call site]
02947
cram_new_block
[function]
[call site]
02948
itf8_put_blk
[function]
[call site]
02949
itf8_put
[function]
[call site]
02950
block_append
[function]
[call site]
02951
itf8_put_blk
[function]
[call site]
02952
itf8_put_blk
[function]
[call site]
02953
itf8_put_blk
[function]
[call site]
02954
itf8_put_blk
[function]
[call site]
02955
itf8_put_blk
[function]
[call site]
02956
kh_destroy_map
[function]
[call site]
02957
kh_init_map
[function]
[call site]
02958
calloc
[call site]
02959
kh_put_map
[function]
[call site]
02960
kh_resize_map
[function]
[call site]
02961
__errno_location
[call site]
02962
realloc
[call site]
02963
__ac_FNV1a_hash_string
[function]
[call site]
02964
strcmp
[call site]
02965
kh_put_map
[function]
[call site]
02966
kh_put_map
[function]
[call site]
02967
kh_put_map
[function]
[call site]
02968
kh_put_map
[function]
[call site]
02969
kh_put_map
[function]
[call site]
02970
kh_put_map
[function]
[call site]
02971
kh_put_map
[function]
[call site]
02972
block_append
[function]
[call site]
02973
block_append_char
[function]
[call site]
02974
sub_idx
[function]
[call site]
02975
sub_idx
[function]
[call site]
02976
sub_idx
[function]
[call site]
02977
sub_idx
[function]
[call site]
02978
sub_idx
[function]
[call site]
02979
sub_idx
[function]
[call site]
02980
sub_idx
[function]
[call site]
02981
sub_idx
[function]
[call site]
02982
sub_idx
[function]
[call site]
02983
sub_idx
[function]
[call site]
02984
sub_idx
[function]
[call site]
02985
sub_idx
[function]
[call site]
02986
sub_idx
[function]
[call site]
02987
sub_idx
[function]
[call site]
02988
sub_idx
[function]
[call site]
02989
sub_idx
[function]
[call site]
02990
sub_idx
[function]
[call site]
02991
sub_idx
[function]
[call site]
02992
sub_idx
[function]
[call site]
02993
sub_idx
[function]
[call site]
02994
block_append
[function]
[call site]
02995
block_append
[function]
[call site]
02996
block_append
[function]
[call site]
02997
block_append
[function]
[call site]
02998
block_append
[function]
[call site]
02999
hts_log
[function]
[call site]
03000
cram_free_block
[function]
[call site]
03001
hts_malloc_p
[function]
[call site]
03002
cram_ref_decr
[function]
[call site]
03003
cram_ref_decr
[function]
[call site]
03004
cram_flush_container2
[function]
[call site]
03005
htell
[function]
[call site]
03006
cram_write_container
[function]
[call site]
03007
itf8_put
[function]
[call site]
03008
crc32
[call site]
03009
hwrite
[function]
[call site]
03010
htell
[function]
[call site]
03011
cram_write_block
[function]
[call site]
03012
__assert_fail
[call site]
03013
hputc
[function]
[call site]
03014
hputc2
[function]
[call site]
03015
flush_buffer
[function]
[call site]
03016
hputc
[function]
[call site]
03017
hwrite
[function]
[call site]
03018
hwrite
[function]
[call site]
03019
hwrite
[function]
[call site]
03020
__assert_fail
[call site]
03021
crc32
[call site]
03022
crc32
[call site]
03023
crc32
[call site]
03024
int32_encode
[function]
[call site]
03025
hwrite
[function]
[call site]
03026
htell
[function]
[call site]
03027
cram_write_block
[function]
[call site]
03028
cram_write_block
[function]
[call site]
03029
htell
[function]
[call site]
03030
cram_index_slice
[function]
[call site]
03031
cram_index_build_multiref
[function]
[call site]
03032
cram_decode_slice
[function]
[call site]
03033
cram_dependent_data_series
[function]
[call site]
03034
cram_uncompress_block
[function]
[call site]
03035
cram_uncompress_block
[function]
[call site]
03036
hts_calloc_ps
[function]
[call site]
03037
cram_codec_to_id
[function]
[call site]
03038
cram_codec_to_id
[function]
[call site]
03039
cram_codec_to_id
[function]
[call site]
03040
cram_uncompress_block
[function]
[call site]
03041
cram_codec_to_id
[function]
[call site]
03042
cram_uncompress_block
[function]
[call site]
03043
cram_codec_to_id
[function]
[call site]
03044
cram_codec_to_id
[function]
[call site]
03045
block_resize_exact
[function]
[call site]
03046
block_resize_exact
[function]
[call site]
03047
block_resize_exact
[function]
[call site]
03048
strcmp
[call site]
03049
hts_malloc_p
[function]
[call site]
03050
hts_log
[function]
[call site]
03051
cram_get_block_by_id
[function]
[call site]
03052
cram_uncompress_block
[function]
[call site]
03053
hts_log
[function]
[call site]
03054
cram_get_ref
[function]
[call site]
03055
hts_log
[function]
[call site]
03056
pthread_mutex_lock
[call site]
03057
pthread_mutex_lock
[call site]
03058
pthread_mutex_unlock
[call site]
03059
pthread_mutex_unlock
[call site]
03060
memcmp
[call site]
03061
hts_log
[function]
[call site]
03062
hts_log
[function]
[call site]
03063
hts_md5_init
[function]
[call site]
03064
hts_md5_update
[function]
[call site]
03065
hts_md5_final
[function]
[call site]
03066
hts_md5_destroy
[function]
[call site]
03067
cram_get_block_by_id
[function]
[call site]
03068
hts_md5_init
[function]
[call site]
03069
hts_md5_update
[function]
[call site]
03070
hts_md5_final
[function]
[call site]
03071
hts_md5_destroy
[function]
[call site]
03072
memcmp
[call site]
03073
sam_hdr_tid2name
[function]
[call site]
03074
hts_log
[function]
[call site]
03075
md5_print
[function]
[call site]
03076
hts_log
[function]
[call site]
03077
md5_print
[function]
[call site]
03078
hts_log
[function]
[call site]
03079
sam_hdr_find_tag_id
[function]
[call site]
03080
sam_hdr_fill_hrecs
[function]
[call site]
03081
sam_hrecs_find_type_id
[function]
[call site]
03082
sam_hrecs_find_key
[function]
[call site]
03083
kputsn
[function]
[call site]
03084
hts_log
[function]
[call site]
03085
hts_log
[function]
[call site]
03086
ks_free
[function]
[call site]
03087
ks_initialize
[function]
[call site]
03088
pthread_mutex_lock
[call site]
03089
pthread_mutex_lock
[call site]
03090
calloc
[call site]
03091
pthread_mutex_unlock
[call site]
03092
pthread_mutex_unlock
[call site]
03093
hts_log
[function]
[call site]
03094
pthread_mutex_lock
[call site]
03095
pthread_mutex_unlock
[call site]
03096
cram_get_ref
[function]
[call site]
03097
pthread_mutex_lock
[call site]
03098
pthread_mutex_unlock
[call site]
03099
pthread_mutex_lock
[call site]
03100
pthread_mutex_unlock
[call site]
03101
cram_ref_decr
[function]
[call site]
03102
pthread_mutex_lock
[call site]
03103
pthread_mutex_lock
[call site]
03104
pthread_mutex_unlock
[call site]
03105
pthread_mutex_unlock
[call site]
03106
hts_log
[function]
[call site]
03107
hts_log
[function]
[call site]
03108
pthread_mutex_lock
[call site]
03109
pthread_mutex_unlock
[call site]
03110
hts_log
[function]
[call site]
03111
hts_log
[function]
[call site]
03112
hts_log
[function]
[call site]
03113
cram_decode_tlen
[function]
[call site]
03114
cram_decode_tlen
[function]
[call site]
03115
cram_decode_tlen
[function]
[call site]
03116
cram_decode_aux_1_0
[function]
[call site]
03117
map_find
[function]
[call site]
03118
block_append
[function]
[call site]
03119
cram_decode_aux
[function]
[call site]
03120
strlen
[call site]
03121
map_find
[function]
[call site]
03122
block_append
[function]
[call site]
03123
aux_ele_size
[function]
[call site]
03124
hts_log
[function]
[call site]
03125
block_resize
[function]
[call site]
03126
block_resize
[function]
[call site]
03127
hts_log
[function]
[call site]
03128
cram_decode_seq
[function]
[call site]
03129
block_append
[function]
[call site]
03130
hts_realloc_p
[function]
[call site]
03131
hts_log
[function]
[call site]
03132
hts_log
[function]
[call site]
03133
memchr
[call site]
03134
add_md_char
[function]
[call site]
03135
block_append_uint
[function]
[call site]
03136
block_grow
[function]
[call site]
03137
append_uint32
[function]
[call site]
03138
block_append_char
[function]
[call site]
03139
block_append_uint
[function]
[call site]
03140
add_md_char
[function]
[call site]
03141
block_append_uint
[function]
[call site]
03142
block_append_char
[function]
[call site]
03143
block_append
[function]
[call site]
03144
block_append_char
[function]
[call site]
03145
block_append
[function]
[call site]
03146
block_append_uint
[function]
[call site]
03147
block_append_uint
[function]
[call site]
03148
block_append_uint
[function]
[call site]
03149
block_append_char
[function]
[call site]
03150
block_append_uint
[function]
[call site]
03151
block_append_char
[function]
[call site]
03152
hts_log
[function]
[call site]
03153
hts_log
[function]
[call site]
03154
memchr
[call site]
03155
add_md_char
[function]
[call site]
03156
hts_realloc_p
[function]
[call site]
03157
block_append_uint
[function]
[call site]
03158
hts_realloc_p
[function]
[call site]
03159
block_append_char
[function]
[call site]
03160
block_append
[function]
[call site]
03161
hts_log
[function]
[call site]
03162
pthread_mutex_lock
[call site]
03163
cram_ref_decr
[function]
[call site]
03164
cram_ref_decr
[function]
[call site]
03165
pthread_mutex_unlock
[call site]
03166
cram_decode_slice_xref
[function]
[call site]
03167
hts_log
[function]
[call site]
03168
cram_free_block
[function]
[call site]
03169
block_resize_exact
[function]
[call site]
03170
block_resize_exact
[function]
[call site]
03171
block_resize_exact
[function]
[call site]
03172
block_resize_exact
[function]
[call site]
03173
bulk_cram_to_bam
[function]
[call site]
03174
pthread_mutex_lock
[call site]
03175
pthread_mutex_unlock
[call site]
03176
hts_realloc_p
[function]
[call site]
03177
bam_set_mempolicy
[function]
[call site]
03178
calloc
[call site]
03179
calloc
[call site]
03180
bam_set_mempolicy
[function]
[call site]
03181
cram_to_bam
[function]
[call site]
03182
hts_log
[function]
[call site]
03183
strlen
[call site]
03184
append_uint64
[function]
[call site]
03185
append_uint32
[function]
[call site]
03186
append_uint32
[function]
[call site]
03187
append_sub32
[function]
[call site]
03188
append_uint32
[function]
[call site]
03189
append_sub32
[function]
[call site]
03190
append_uint64
[function]
[call site]
03191
bam_set1
[function]
[call site]
03192
bam_cigar2rqlens
[function]
[call site]
03193
hts_log
[function]
[call site]
03194
__errno_location
[call site]
03195
hts_log
[function]
[call site]
03196
__errno_location
[call site]
03197
hts_log
[function]
[call site]
03198
__errno_location
[call site]
03199
hts_log
[function]
[call site]
03200
__errno_location
[call site]
03201
subtract_check_underflow
[function]
[call site]
03202
subtract_check_underflow
[function]
[call site]
03203
subtract_check_underflow
[function]
[call site]
03204
subtract_check_underflow
[function]
[call site]
03205
subtract_check_underflow
[function]
[call site]
03206
hts_log
[function]
[call site]
03207
__errno_location
[call site]
03208
hts_add_sat2
[function]
[call site]
03209
realloc_bam_data
[function]
[call site]
03210
sam_realloc_bam_data
[function]
[call site]
03211
__errno_location
[call site]
03212
__errno_location
[call site]
03213
bam_get_mempolicy
[function]
[call site]
03214
realloc
[call site]
03215
bam_get_mempolicy
[function]
[call site]
03216
bam_set_mempolicy
[function]
[call site]
03217
hts_reg2bin
[function]
[call site]
03218
strncpy
[call site]
03219
bam_tag2cigar
[function]
[call site]
03220
bam_aux_get
[function]
[call site]
03221
__errno_location
[call site]
03222
__errno_location
[call site]
03223
__errno_location
[call site]
03224
le_to_u32
[function]
[call site]
03225
possibly_expand_bam_data
[function]
[call site]
03226
__errno_location
[call site]
03227
sam_realloc_bam_data
[function]
[call site]
03228
bam_endpos
[function]
[call site]
03229
bam_cigar2rlen
[function]
[call site]
03230
hts_reg2bin
[function]
[call site]
03231
hts_log
[function]
[call site]
03232
pthread_mutex_lock
[call site]
03233
cram_ref_decr
[function]
[call site]
03234
pthread_mutex_unlock
[call site]
03235
hts_log
[function]
[call site]
03236
snprintf
[call site]
03237
strlen
[call site]
03238
bgzf_write
[function]
[call site]
03239
hwrite
[function]
[call site]
03240
__assert_fail
[call site]
03241
lazy_flush
[function]
[call site]
03242
mt_queue
[function]
[call site]
03243
bgzf_flush
[function]
[call site]
03244
snprintf
[call site]
03245
strlen
[call site]
03246
bgzf_write
[function]
[call site]
03247
snprintf
[call site]
03248
strlen
[call site]
03249
bgzf_write
[function]
[call site]
03250
__errno_location
[call site]
03251
hts_tpool_dispatch2
[function]
[call site]
03252
hts_tpool_dispatch3
[function]
[call site]
03253
cram_flush_thread
[function]
[call site]
03254
cram_encode_container
[function]
[call site]
03255
hts_log
[function]
[call site]
03256
__errno_location
[call site]
03257
cram_flush_result
[function]
[call site]
03258
hts_tpool_next_result
[function]
[call site]
03259
pthread_mutex_lock
[call site]
03260
hts_tpool_next_result_locked
[function]
[call site]
03261
pthread_mutex_unlock
[call site]
03262
hts_tpool_result_data
[function]
[call site]
03263
hts_tpool_delete_result
[function]
[call site]
03264
cram_flush_container2
[function]
[call site]
03265
cram_free_slice
[function]
[call site]
03266
cram_free_slice
[function]
[call site]
03267
cram_free_container
[function]
[call site]
03268
hts_tpool_delete_result
[function]
[call site]
03269
cram_free_container
[function]
[call site]
03270
hts_usleep
[function]
[call site]
03271
cram_drain_rqueue
[function]
[call site]
03272
hts_tpool_process_flush
[function]
[call site]
03273
cram_flush_result
[function]
[call site]
03274
hts_tpool_process_destroy
[function]
[call site]
03275
pthread_mutex_destroy
[call site]
03276
pthread_mutex_destroy
[call site]
03277
pthread_mutex_destroy
[call site]
03278
pthread_mutex_destroy
[call site]
03279
cram_write_eof_block
[function]
[call site]
03280
cram_encode_compression_header
[function]
[call site]
03281
cram_write_container
[function]
[call site]
03282
cram_write_block
[function]
[call site]
03283
cram_close
[function]
[call site]
03284
free_bam_list
[function]
[call site]
03285
hclose
[function]
[call site]
03286
cram_free_file_def
[function]
[call site]
03287
sam_hdr_destroy
[function]
[call site]
03288
cram_free_container
[function]
[call site]
03289
cram_free_container
[function]
[call site]
03290
refs_free
[function]
[call site]
03291
kh_destroy_m_metrics
[function]
[call site]
03292
cram_index_free
[function]
[call site]
03293
cram_index_free_recurse
[function]
[call site]
03294
cram_index_free_recurse
[function]
[call site]
03295
hts_tpool_destroy
[function]
[call site]
03296
bgzf_close
[function]
[call site]
03297
cram_free_block
[function]
[call site]
03298
kh_destroy_map
[function]
[call site]
03299
cram_free_block
[function]
[call site]
03300
sam_state_destroy
[function]
[call site]
03301
fastq_state_destroy
[function]
[call site]
03302
kh_destroy_tag
[function]
[call site]
03303
ks_free
[function]
[call site]
03304
ks_initialize
[function]
[call site]
03305
ks_free
[function]
[call site]
03306
ks_free
[function]
[call site]
03307
regfree
[call site]
03308
bgzf_close
[function]
[call site]
03309
hclose
[function]
[call site]
03310
hts_idx_close_otf_fp
[function]
[call site]
03311
need_idx_ugly_delay_hack
[function]
[call site]
03312
idx_write_uint64
[function]
[call site]
03313
ed_is_big
[function]
[call site]
03314
ed_swap_8
[function]
[call site]
03315
bgzf_write
[function]
[call site]
03316
bgzf_close
[function]
[call site]
03317
sam_hdr_destroy
[function]
[call site]
03318
hts_idx_destroy
[function]
[call site]
03319
cram_index_free
[function]
[call site]
03320
kh_destroy_bin
[function]
[call site]
03321
hts_filter_free
[function]
[call site]
03322
__errno_location
[call site]
03323
view_sam
[function]
[call site]
03324
abort
[call site]
03325
hopen
[function]
[call site]
03326
hts_hopen
[function]
[call site]
03327
hclose
[function]
[call site]
03328
abort
[call site]
03329
hts_open
[function]
[call site]
03330
hts_open_format
[function]
[call site]
03331
strncpy
[call site]
03332
strchr
[call site]
03333
strchr
[call site]
03334
strchr
[call site]
03335
strstr
[call site]
03336
strdup
[call site]
03337
hopen
[function]
[call site]
03338
hts_hopen
[function]
[call site]
03339
hts_opt_apply
[function]
[call site]
03340
__errno_location
[call site]
03341
__errno_location
[call site]
03342
__errno_location
[call site]
03343
__errno_location
[call site]
03344
strerror
[call site]
03345
hts_log
[function]
[call site]
03346
hclose_abruptly
[function]
[call site]
03347
abort
[call site]
03348
sam_hdr_read
[function]
[call site]
03349
__errno_location
[call site]
03350
bam_hdr_read
[function]
[call site]
03351
bgzf_check_EOF
[function]
[call site]
03352
pthread_mutex_lock
[call site]
03353
pthread_cond_signal
[call site]
03354
hts_tpool_wake_dispatch
[function]
[call site]
03355
pthread_mutex_unlock
[call site]
03356
pthread_cond_wait
[call site]
03357
pthread_cond_signal
[call site]
03358
abort
[call site]
03359
pthread_mutex_unlock
[call site]
03360
bgzf_check_EOF_common
[function]
[call site]
03361
htell
[function]
[call site]
03362
hseek
[function]
[call site]
03363
__errno_location
[call site]
03364
hclearerr
[function]
[call site]
03365
__errno_location
[call site]
03366
hclearerr
[function]
[call site]
03367
hread
[function]
[call site]
03368
hseek
[function]
[call site]
03369
memcmp
[call site]
03370
perror
[call site]
03371
hts_log
[function]
[call site]
03372
bgzf_read
[function]
[call site]
03373
memcmp
[call site]
03374
hts_log
[function]
[call site]
03375
sam_hdr_init
[function]
[call site]
03376
bgzf_read
[function]
[call site]
03377
le_to_u32
[function]
[call site]
03378
bgzf_read
[function]
[call site]
03379
bgzf_read
[function]
[call site]
03380
ed_swap_4p
[function]
[call site]
03381
ed_swap_4
[function]
[call site]
03382
calloc
[call site]
03383
calloc
[call site]
03384
bgzf_read
[function]
[call site]
03385
ed_swap_4p
[function]
[call site]
03386
bgzf_read
[function]
[call site]
03387
realloc
[call site]
03388
bgzf_read
[function]
[call site]
03389
ed_swap_4p
[function]
[call site]
03390
hts_log
[function]
[call site]
03391
hts_log
[function]
[call site]
03392
hts_log
[function]
[call site]
03393
sam_hdr_destroy
[function]
[call site]
03394
sam_hdr_sanitise
[function]
[call site]
03395
hts_log
[function]
[call site]
03396
sam_hdr_destroy
[function]
[call site]
03397
hts_log
[function]
[call site]
03398
hts_log
[function]
[call site]
03399
hts_log
[function]
[call site]
03400
sam_hdr_destroy
[function]
[call site]
03401
realloc
[call site]
03402
sam_hdr_destroy
[function]
[call site]
03403
sam_hdr_dup
[function]
[call site]
03404
sam_hdr_init
[function]
[call site]
03405
calloc
[call site]
03406
calloc
[call site]
03407
strdup
[call site]
03408
sam_hdr_dup_sdict
[function]
[call site]
03409
kh_init_s2i
[function]
[call site]
03410
kh_get_s2i
[function]
[call site]
03411
kh_put_s2i
[function]
[call site]
03412
kh_destroy_s2i
[function]
[call site]
03413
sam_hrecs_rebuild_text
[function]
[call site]
03414
kputsn
[function]
[call site]
03415
sam_hrecs_rebuild_lines
[function]
[call site]
03416
kputsn
[function]
[call site]
03417
build_header_line
[function]
[call site]
03418
kputc_
[function]
[call site]
03419
kputsn
[function]
[call site]
03420
kputc_
[function]
[call site]
03421
kputsn
[function]
[call site]
03422
kputc
[function]
[call site]
03423
ks_release
[function]
[call site]
03424
ks_release
[function]
[call site]
03425
sam_hdr_update_target_arrays
[function]
[call site]
03426
hts_malloc_ps
[function]
[call site]
03427
sam_hdr_destroy
[function]
[call site]
03428
sam_hdr_sanitise
[function]
[call site]
03429
sam_hdr_create
[function]
[call site]
03430
sam_hdr_init
[function]
[call site]
03431
sam_hdr_build_from_sam_file
[function]
[call site]
03432
sam_hrecs_new
[function]
[call site]
03433
hts_getline
[function]
[call site]
03434
hts_log
[function]
[call site]
03435
abort
[call site]
03436
kgetline2
[function]
[call site]
03437
ks_resize
[function]
[call site]
03438
hgetln_wrapper
[function]
[call site]
03439
hgetln
[function]
[call site]
03440
herrno
[function]
[call site]
03441
__errno_location
[call site]
03442
bgzf_getline
[function]
[call site]
03443
bgzf_read_block
[function]
[call site]
03444
memchr
[call site]
03445
ks_expand
[function]
[call site]
03446
bgzf_htell
[function]
[call site]
03447
abort
[call site]
03448
isalpha_c
[function]
[call site]
03449
sam_hrecs_error
[function]
[call site]
03450
strncmp
[call site]
03451
kputc
[function]
[call site]
03452
valid_sam_header_type
[function]
[call site]
03453
hts_log
[function]
[call site]
03454
warn_if_known_stderr
[function]
[call site]
03455
sam_hrecs_parse_single_line
[function]
[call site]
03456
TYPEKEY
[function]
[call site]
03457
kputsn
[function]
[call site]
03458
kputc
[function]
[call site]
03459
bgzf_peek
[function]
[call site]
03460
bgzf_read_block
[function]
[call site]
03461
hts_log
[function]
[call site]
03462
hpeek
[function]
[call site]
03463
strstr
[call site]
03464
hopen
[function]
[call site]
03465
khgetline
[function]
[call site]
03466
kgetline
[function]
[call site]
03467
ks_resize
[function]
[call site]
03468
strlen
[call site]
03469
hgets_wrapper
[function]
[call site]
03470
hgets
[function]
[call site]
03471
strchr
[call site]
03472
strtoll
[call site]
03473
kputs
[function]
[call site]
03474
kputsn
[function]
[call site]
03475
kputs
[function]
[call site]
03476
kputll
[function]
[call site]
03477
kputc
[function]
[call site]
03478
sam_hrecs_parse_single_line
[function]
[call site]
03479
ks_free
[function]
[call site]
03480
hclose
[function]
[call site]
03481
hts_log
[function]
[call site]
03482
kh_grow_to_fit_m_s2i
[function]
[call site]
03483
hts_realloc_p
[function]
[call site]
03484
sam_hrecs_update_hashes
[function]
[call site]
03485
kputsn
[function]
[call site]
03486
ks_release
[function]
[call site]
03487
sam_hdr_update_target_arrays
[function]
[call site]
03488
ks_free
[function]
[call site]
03489
sam_hdr_destroy
[function]
[call site]
03490
sam_hdr_destroy
[function]
[call site]
03491
sam_hdr_sanitise
[function]
[call site]
03492
sam_hdr_init
[function]
[call site]
03493
__errno_location
[call site]
03494
__errno_location
[call site]
03495
sam_hdr_incr_ref
[function]
[call site]
03496
hts_close_or_abort
[function]
[call site]
03497
hts_close
[function]
[call site]
03498
abort
[call site]
03499
hts_close
[function]
[call site]
03500
hts_close
[function]
[call site]
03501
sam_hdr_count_lines
[function]
[call site]
03502
sam_hdr_fill_hrecs
[function]
[call site]
03503
sam_hrecs_find_type_id
[function]
[call site]
03504
sam_hdr_write
[function]
[call site]
03505
__errno_location
[call site]
03506
bam_hdr_write
[function]
[call site]
03507
sam_hrecs_rebuild_text
[function]
[call site]
03508
hts_log
[function]
[call site]
03509
hts_log
[function]
[call site]
03510
hts_log
[function]
[call site]
03511
hts_log
[function]
[call site]
03512
hts_log
[function]
[call site]
03513
hts_log
[function]
[call site]
03514
bgzf_write
[function]
[call site]
03515
ed_swap_4
[function]
[call site]
03516
bgzf_write
[function]
[call site]
03517
bgzf_write
[function]
[call site]
03518
ed_swap_4
[function]
[call site]
03519
bgzf_write
[function]
[call site]
03520
bgzf_write
[function]
[call site]
03521
bgzf_write
[function]
[call site]
03522
bgzf_write
[function]
[call site]
03523
strlen
[call site]
03524
ed_swap_4
[function]
[call site]
03525
bgzf_write
[function]
[call site]
03526
bgzf_write
[function]
[call site]
03527
bgzf_write
[function]
[call site]
03528
ed_swap_4
[function]
[call site]
03529
bgzf_write
[function]
[call site]
03530
bgzf_write
[function]
[call site]
03531
bgzf_flush
[function]
[call site]
03532
cram_set_header2
[function]
[call site]
03533
sam_hdr_destroy
[function]
[call site]
03534
sam_hdr_dup
[function]
[call site]
03535
refs_from_header
[function]
[call site]
03536
cram_load_reference
[function]
[call site]
03537
cram_write_SAM_hdr
[function]
[call site]
03538
cram_write_file_def
[function]
[call site]
03539
hwrite
[function]
[call site]
03540
sam_hrecs_find_rg
[function]
[call site]
03541
sam_hdr_add_line
[function]
[call site]
03542
sam_hdr_fill_hrecs
[function]
[call site]
03543
sam_hrecs_vadd
[function]
[call site]
03544
rebuild_target_arrays
[function]
[call site]
03545
redact_header_text
[function]
[call site]
03546
refs_from_header
[function]
[call site]
03547
refs2id
[function]
[call site]
03548
sam_hrecs_find_type_id
[function]
[call site]
03549
sam_hrecs_find_key
[function]
[call site]
03550
cram_get_ref
[function]
[call site]
03551
hts_log
[function]
[call site]
03552
hts_log
[function]
[call site]
03553
hts_log
[function]
[call site]
03554
pthread_mutex_lock
[call site]
03555
pthread_mutex_unlock
[call site]
03556
hts_md5_init
[function]
[call site]
03557
hts_md5_update
[function]
[call site]
03558
hts_md5_final
[function]
[call site]
03559
hts_md5_destroy
[function]
[call site]
03560
cram_ref_decr
[function]
[call site]
03561
hts_md5_hex
[function]
[call site]
03562
sam_hdr_update_line
[function]
[call site]
03563
sam_hdr_fill_hrecs
[function]
[call site]
03564
sam_hrecs_find_type_id
[function]
[call site]
03565
check_for_name_update
[function]
[call site]
03566
TYPEKEY
[function]
[call site]
03567
TYPEKEY
[function]
[call site]
03568
TYPEKEY
[function]
[call site]
03569
sam_hrecs_find_key
[function]
[call site]
03570
__assert_fail
[call site]
03571
strcmp
[call site]
03572
strcmp
[call site]
03573
kh_get_m_s2i
[function]
[call site]
03574
hts_log
[function]
[call site]
03575
TYPEKEY
[function]
[call site]
03576
hts_log
[function]
[call site]
03577
sam_hrecs_vupdate
[function]
[call site]
03578
kh_get_m_s2i
[function]
[call site]
03579
sam_hrecs_find_key
[function]
[call site]
03580
__assert_fail
[call site]
03581
__assert_fail
[call site]
03582
__assert_fail
[call site]
03583
kh_del_m_s2i
[function]
[call site]
03584
kh_put_m_s2i
[function]
[call site]
03585
hts_log
[function]
[call site]
03586
TYPEKEY
[function]
[call site]
03587
sam_hrecs_update_hashes
[function]
[call site]
03588
rebuild_target_arrays
[function]
[call site]
03589
redact_header_text
[function]
[call site]
03590
full_path
[function]
[call site]
03591
strlen
[call site]
03592
hisremote
[function]
[call site]
03593
hts_log
[function]
[call site]
03594
strncpy
[call site]
03595
toupper_c
[function]
[call site]
03596
strncpy
[call site]
03597
getcwd
[call site]
03598
strlen
[call site]
03599
strncpy
[call site]
03600
snprintf
[call site]
03601
sam_hdr_update_line
[function]
[call site]
03602
sam_hdr_remove_tag_all
[function]
[call site]
03603
sam_hdr_fill_hrecs
[function]
[call site]
03604
TYPEKEY
[function]
[call site]
03605
kh_get_sam_hrecs_t
[function]
[call site]
03606
sam_hrecs_remove_key
[function]
[call site]
03607
sam_hrecs_find_key
[function]
[call site]
03608
TYPEKEY
[function]
[call site]
03609
__assert_fail
[call site]
03610
sam_hrecs_find_key
[function]
[call site]
03611
__assert_fail
[call site]
03612
kh_get_m_s2i
[function]
[call site]
03613
sam_hrecs_remove_ref_altnames
[function]
[call site]
03614
kstrtok
[function]
[call site]
03615
ks_clear
[function]
[call site]
03616
kputsn
[function]
[call site]
03617
kh_get_m_s2i
[function]
[call site]
03618
strcmp
[call site]
03619
kh_del_m_s2i
[function]
[call site]
03620
pool_free
[function]
[call site]
03621
hts_log
[function]
[call site]
03622
sam_hdr_length
[function]
[call site]
03623
sam_hdr_rebuild
[function]
[call site]
03624
rebuild_target_arrays
[function]
[call site]
03625
hts_log
[function]
[call site]
03626
sam_hdr_link_pg
[function]
[call site]
03627
sam_hdr_fill_hrecs
[function]
[call site]
03628
hts_realloc_p
[function]
[call site]
03629
calloc
[call site]
03630
__assert_fail
[call site]
03631
kh_get_m_s2i
[function]
[call site]
03632
hts_log
[function]
[call site]
03633
hts_log
[function]
[call site]
03634
redact_header_text
[function]
[call site]
03635
hts_log
[function]
[call site]
03636
sam_hrecs_rebuild_text
[function]
[call site]
03637
ks_free
[function]
[call site]
03638
hts_log
[function]
[call site]
03639
ks_len
[function]
[call site]
03640
ks_release
[function]
[call site]
03641
hts_log
[function]
[call site]
03642
int32_encode
[function]
[call site]
03643
sam_hdr_str
[function]
[call site]
03644
sam_hdr_rebuild
[function]
[call site]
03645
hwrite
[function]
[call site]
03646
cram_new_block
[function]
[call site]
03647
cram_new_container
[function]
[call site]
03648
calloc
[call site]
03649
calloc
[call site]
03650
cram_new_compression_header
[function]
[call site]
03651
calloc
[call site]
03652
cram_new_block
[function]
[call site]
03653
kh_init_m_s2i
[function]
[call site]
03654
cram_free_block
[function]
[call site]
03655
string_pool_create
[function]
[call site]
03656
kh_destroy_m_s2i
[function]
[call site]
03657
cram_free_block
[function]
[call site]
03658
cram_stats_create
[function]
[call site]
03659
calloc
[call site]
03660
kh_init_m_tagmap
[function]
[call site]
03661
calloc
[call site]
03662
cram_free_block
[function]
[call site]
03663
cram_free_container
[function]
[call site]
03664
int32_put_blk
[function]
[call site]
03665
block_append
[function]
[call site]
03666
sam_hdr_str
[function]
[call site]
03667
block_append
[function]
[call site]
03668
cram_compress_block
[function]
[call site]
03669
cram_compress_block2
[function]
[call site]
03670
cram_free_block
[function]
[call site]
03671
cram_free_container
[function]
[call site]
03672
calloc
[call site]
03673
cram_free_block
[function]
[call site]
03674
cram_free_container
[function]
[call site]
03675
block_append
[function]
[call site]
03676
cram_write_container
[function]
[call site]
03677
cram_free_block
[function]
[call site]
03678
cram_free_container
[function]
[call site]
03679
cram_write_block
[function]
[call site]
03680
cram_free_block
[function]
[call site]
03681
cram_free_container
[function]
[call site]
03682
block_resize
[function]
[call site]
03683
cram_write_block
[function]
[call site]
03684
cram_free_block
[function]
[call site]
03685
cram_free_container
[function]
[call site]
03686
cram_free_block
[function]
[call site]
03687
cram_free_container
[function]
[call site]
03688
hflush
[function]
[call site]
03689
sam_hrecs_rebuild_text
[function]
[call site]
03690
strstr
[call site]
03691
bgzf_write
[function]
[call site]
03692
hwrite
[function]
[call site]
03693
kputsn
[function]
[call site]
03694
kputs
[function]
[call site]
03695
kputsn
[function]
[call site]
03696
kputw
[function]
[call site]
03697
kputc
[function]
[call site]
03698
bgzf_write
[function]
[call site]
03699
bgzf_flush
[function]
[call site]
03700
hflush
[function]
[call site]
03701
__errno_location
[call site]
03702
sam_hdr_dup
[function]
[call site]
03703
sam_hdr_destroy
[function]
[call site]
03704
bam_init1
[function]
[call site]
03705
calloc
[call site]
03706
sam_read1
[function]
[call site]
03707
sam_read1_bam
[function]
[call site]
03708
bam_read1
[function]
[call site]
03709
bgzf_read_small
[function]
[call site]
03710
bgzf_read
[function]
[call site]
03711
ed_swap_4p
[function]
[call site]
03712
bgzf_read
[function]
[call site]
03713
le_to_u32
[function]
[call site]
03714
le_to_i32
[function]
[call site]
03715
le_to_u32
[function]
[call site]
03716
le_to_u32
[function]
[call site]
03717
le_to_u32
[function]
[call site]
03718
le_to_u32
[function]
[call site]
03719
le_to_i32
[function]
[call site]
03720
le_to_i32
[function]
[call site]
03721
realloc_bam_data
[function]
[call site]
03722
bgzf_read_small
[function]
[call site]
03723
fixup_missing_qname_nul
[function]
[call site]
03724
realloc_bam_data
[function]
[call site]
03725
bgzf_read_small
[function]
[call site]
03726
swap_data
[function]
[call site]
03727
ed_swap_4p
[function]
[call site]
03728
bam_tag2cigar
[function]
[call site]
03729
bam_cigar2rqlens
[function]
[call site]
03730
hts_reg2bin
[function]
[call site]
03731
hts_log
[function]
[call site]
03732
__errno_location
[call site]
03733
sam_read1_cram
[function]
[call site]
03734
cram_get_bam_seq
[function]
[call site]
03735
cram_get_seq
[function]
[call site]
03736
pthread_mutex_lock
[call site]
03737
pthread_mutex_unlock
[call site]
03738
cram_next_slice
[function]
[call site]
03739
cram_first_slice
[function]
[call site]
03740
cram_free_container
[function]
[call site]
03741
cram_read_container
[function]
[call site]
03742
cram_seek
[function]
[call site]
03743
cram_free_container
[function]
[call site]
03744
cram_read_container
[function]
[call site]
03745
cram_read_block
[function]
[call site]
03746
cram_decode_compression_header
[function]
[call site]
03747
calloc
[call site]
03748
cram_uncompress_block
[function]
[call site]
03749
hts_malloc_p
[function]
[call site]
03750
kh_init_map
[function]
[call site]
03751
cram_free_compression_header
[function]
[call site]
03752
cram_free_compression_header
[function]
[call site]
03753
kh_put_map
[function]
[call site]
03754
cram_free_compression_header
[function]
[call site]
03755
kh_put_map
[function]
[call site]
03756
cram_free_compression_header
[function]
[call site]
03757
kh_put_map
[function]
[call site]
03758
cram_free_compression_header
[function]
[call site]
03759
kh_put_map
[function]
[call site]
03760
cram_free_compression_header
[function]
[call site]
03761
cram_free_compression_header
[function]
[call site]
03762
kh_put_map
[function]
[call site]
03763
cram_free_compression_header
[function]
[call site]
03764
cram_decode_TD
[function]
[call site]
03765
cram_new_block
[function]
[call site]
03766
hts_log
[function]
[call site]
03767
cram_free_block
[function]
[call site]
03768
cram_free_block
[function]
[call site]
03769
cram_free_block
[function]
[call site]
03770
block_append
[function]
[call site]
03771
block_append_char
[function]
[call site]
03772
calloc
[call site]
03773
cram_free_block
[function]
[call site]
03774
cram_free_block
[function]
[call site]
03775
cram_free_compression_header
[function]
[call site]
03776
kh_put_map
[function]
[call site]
03777
cram_free_compression_header
[function]
[call site]
03778
hts_log
[function]
[call site]
03779
cram_free_compression_header
[function]
[call site]
03780
cram_free_compression_header
[function]
[call site]
03781
cram_free_compression_header
[function]
[call site]
03782
hts_log
[function]
[call site]
03783
hts_log
[function]
[call site]
03784
cram_decoder_init
[function]
[call site]
03785
cram_encoding2str
[function]
[call site]
03786
hts_log
[function]
[call site]
03787
cram_free_compression_header
[function]
[call site]
03788
cram_free_compression_header
[function]
[call site]
03789
cram_free_compression_header
[function]
[call site]
03790
cram_free_compression_header
[function]
[call site]
03791
cram_decoder_init
[function]
[call site]
03792
cram_free_compression_header
[function]
[call site]
03793
cram_free_compression_header
[function]
[call site]
03794
sam_hrecs_sort_order
[function]
[call site]
03795
TYPEKEY
[function]
[call site]
03796
kh_get_sam_hrecs_t
[function]
[call site]
03797
strcmp
[call site]
03798
strcmp
[call site]
03799
strcmp
[call site]
03800
strcmp
[call site]
03801
hts_log
[function]
[call site]
03802
pthread_mutex_lock
[call site]
03803
pthread_mutex_unlock
[call site]
03804
cram_free_slice
[function]
[call site]
03805
cram_free_container
[function]
[call site]
03806
cram_read_container
[function]
[call site]
03807
cram_free_container
[function]
[call site]
03808
cram_free_container
[function]
[call site]
03809
cram_free_container
[function]
[call site]
03810
cram_free_container
[function]
[call site]
03811
hseek
[function]
[call site]
03812
cram_read_block
[function]
[call site]
03813
cram_decode_compression_header
[function]
[call site]
03814
sam_hrecs_sort_order
[function]
[call site]
03815
pthread_mutex_lock
[call site]
03816
pthread_mutex_unlock
[call site]
03817
cram_free_container
[function]
[call site]
03818
cram_read_slice
[function]
[call site]
03819
cram_read_block
[function]
[call site]
03820
calloc
[call site]
03821
cram_decode_slice_header
[function]
[call site]
03822
cram_uncompress_block
[function]
[call site]
03823
calloc
[call site]
03824
hts_log
[function]
[call site]
03825
hts_malloc_p
[function]
[call site]
03826
cram_content_type2str
[function]
[call site]
03827
hts_log
[function]
[call site]
03828
hts_log
[function]
[call site]
03829
calloc
[call site]
03830
cram_read_block
[function]
[call site]
03831
calloc
[call site]
03832
hts_malloc_p
[function]
[call site]
03833
cram_new_block
[function]
[call site]
03834
cram_new_block
[function]
[call site]
03835
cram_new_block
[function]
[call site]
03836
cram_new_block
[function]
[call site]
03837
cram_new_block
[function]
[call site]
03838
cram_new_block
[function]
[call site]
03839
cram_free_block
[function]
[call site]
03840
cram_free_slice
[function]
[call site]
03841
cram_free_slice
[function]
[call site]
03842
cram_free_slice
[function]
[call site]
03843
cram_free_slice
[function]
[call site]
03844
cram_decode_slice_mt
[function]
[call site]
03845
cram_decode_slice
[function]
[call site]
03846
hts_tpool_process_sz
[function]
[call site]
03847
pthread_mutex_lock
[call site]
03848
pthread_mutex_unlock
[call site]
03849
__errno_location
[call site]
03850
__errno_location
[call site]
03851
hts_tpool_dispatch2
[function]
[call site]
03852
cram_decode_slice_thread
[function]
[call site]
03853
cram_decode_slice
[function]
[call site]
03854
__errno_location
[call site]
03855
__errno_location
[call site]
03856
hts_log
[function]
[call site]
03857
cram_free_slice
[function]
[call site]
03858
hts_tpool_process_len
[function]
[call site]
03859
pthread_mutex_lock
[call site]
03860
pthread_mutex_unlock
[call site]
03861
hts_tpool_process_qsize
[function]
[call site]
03862
hts_tpool_process_empty
[function]
[call site]
03863
hts_tpool_next_result_wait
[function]
[call site]
03864
hts_tpool_result_data
[function]
[call site]
03865
hts_log
[function]
[call site]
03866
hts_tpool_result_data
[function]
[call site]
03867
hts_log
[function]
[call site]
03868
hts_tpool_delete_result
[function]
[call site]
03869
hts_tpool_delete_result
[function]
[call site]
03870
cram_free_slice
[function]
[call site]
03871
cram_free_slice
[function]
[call site]
03872
bam_get_mempolicy
[function]
[call site]
03873
bam_copy1
[function]
[call site]
03874
realloc_bam_data
[function]
[call site]
03875
bam_set_mempolicy
[function]
[call site]
03876
cram_to_bam
[function]
[call site]
03877
cram_eof
[function]
[call site]
03878
sam_read1_sam
[function]
[call site]
03879
sam_parse1
[function]
[call site]
03880
strchr
[call site]
03881
hts_log
[function]
[call site]
03882
hts_log
[function]
[call site]
03883
possibly_expand_bam_data
[function]
[call site]
03884
parse_sam_flag
[function]
[call site]
03885
hts_str2uint
[function]
[call site]
03886
strtoul
[call site]
03887
strchr
[call site]
03888
strcmp
[call site]
03889
hts_log
[function]
[call site]
03890
bam_name2id
[function]
[call site]
03891
sam_hdr_name2tid
[function]
[call site]
03892
sam_hdr_fill_hrecs
[function]
[call site]
03893
kh_get_m_s2i
[function]
[call site]
03894
hts_log
[function]
[call site]
03895
hts_strprint
[function]
[call site]
03896
isprint_c
[function]
[call site]
03897
__ctype_b_loc
[call site]
03898
strcpy
[call site]
03899
snprintf
[call site]
03900
hts_log
[function]
[call site]
03901
hts_str2uint
[function]
[call site]
03902
hts_log
[function]
[call site]
03903
hts_str2uint
[function]
[call site]
03904
bam_parse_cigar
[function]
[call site]
03905
hts_log
[function]
[call site]
03906
read_ncigar
[function]
[call site]
03907
isdigit_c
[function]
[call site]
03908
hts_log
[function]
[call site]
03909
hts_log
[function]
[call site]
03910
possibly_expand_bam_data
[function]
[call site]
03911
hts_log
[function]
[call site]
03912
parse_cigar
[function]
[call site]
03913
hts_str2uint
[function]
[call site]
03914
hts_log
[function]
[call site]
03915
hts_log
[function]
[call site]
03916
hts_log
[function]
[call site]
03917
bam_cigar2rlen
[function]
[call site]
03918
hts_log
[function]
[call site]
03919
strchr
[call site]
03920
hts_log
[function]
[call site]
03921
hts_reg2bin
[function]
[call site]
03922
strchr
[call site]
03923
strcmp
[call site]
03924
strcmp
[call site]
03925
bam_name2id
[function]
[call site]
03926
hts_strprint
[function]
[call site]
03927
hts_log
[function]
[call site]
03928
hts_str2uint
[function]
[call site]
03929
hts_log
[function]
[call site]
03930
hts_str2int
[function]
[call site]
03931
hts_log
[function]
[call site]
03932
strchr
[call site]
03933
strcmp
[call site]
03934
hts_log
[function]
[call site]
03935
bam_cigar2qlen
[function]
[call site]
03936
hts_log
[function]
[call site]
03937
possibly_expand_bam_data
[function]
[call site]
03938
possibly_expand_bam_data
[function]
[call site]
03939
hts_log
[function]
[call site]
03940
hts_log
[function]
[call site]
03941
aux_parse
[function]
[call site]
03942
hts_log
[function]
[call site]
03943
isspace_c
[function]
[call site]
03944
isspace_c
[function]
[call site]
03945
isspace_c
[function]
[call site]
03946
kh_get_tag
[function]
[call site]
03947
possibly_expand_bam_data
[function]
[call site]
03948
isspace_c
[function]
[call site]
03949
hts_log
[function]
[call site]
03950
possibly_expand_bam_data
[function]
[call site]
03951
hts_str2int
[function]
[call site]
03952
i16_to_le
[function]
[call site]
03953
u16_to_le
[function]
[call site]
03954
i32_to_le
[function]
[call site]
03955
u32_to_le
[function]
[call site]
03956
hts_str2uint
[function]
[call site]
03957
u16_to_le
[function]
[call site]
03958
u32_to_le
[function]
[call site]
03959
strtod
[call site]
03960
float_to_le
[function]
[call site]
03961
u32_to_le
[function]
[call site]
03962
strtod
[call site]
03963
double_to_le
[function]
[call site]
03964
u64_to_le
[function]
[call site]
03965
strchr
[call site]
03966
strlen
[call site]
03967
isspace_c
[function]
[call site]
03968
hts_log
[function]
[call site]
03969
possibly_expand_bam_data
[function]
[call site]
03970
isspace_c
[function]
[call site]
03971
hts_log
[function]
[call site]
03972
sam_parse_B_vals
[function]
[call site]
03973
sam_parse_B_vals_r
[function]
[call site]
03974
hts_log
[function]
[call site]
03975
aux_type2size
[function]
[call site]
03976
possibly_expand_bam_data
[function]
[call site]
03977
hts_log
[function]
[call site]
03978
sam_parse_Bc_vals
[function]
[call site]
03979
grow_B_array
[function]
[call site]
03980
__errno_location
[call site]
03981
possibly_expand_bam_data
[function]
[call site]
03982
hts_log
[function]
[call site]
03983
hts_str2int
[function]
[call site]
03984
sam_parse_BC_vals
[function]
[call site]
03985
grow_B_array
[function]
[call site]
03986
hts_str2uint
[function]
[call site]
03987
sam_parse_Bs_vals
[function]
[call site]
03988
grow_B_array
[function]
[call site]
03989
hts_str2int
[function]
[call site]
03990
i16_to_le
[function]
[call site]
03991
sam_parse_BS_vals
[function]
[call site]
03992
grow_B_array
[function]
[call site]
03993
hts_str2uint
[function]
[call site]
03994
u16_to_le
[function]
[call site]
03995
sam_parse_Bi_vals
[function]
[call site]
03996
grow_B_array
[function]
[call site]
03997
hts_str2int
[function]
[call site]
03998
i32_to_le
[function]
[call site]
03999
sam_parse_BI_vals
[function]
[call site]
04000
grow_B_array
[function]
[call site]
04001
hts_str2uint
[function]
[call site]
04002
u32_to_le
[function]
[call site]
04003
sam_parse_Bf_vals
[function]
[call site]
04004
grow_B_array
[function]
[call site]
04005
strtod
[call site]
04006
float_to_le
[function]
[call site]
04007
hts_log
[function]
[call site]
04008
i32_to_le
[function]
[call site]
04009
hts_str2int
[function]
[call site]
04010
sam_parse_B_vals_r
[function]
[call site]
04011
sam_parse_B_vals_r
[function]
[call site]
04012
sam_parse_B_vals_r
[function]
[call site]
04013
sam_parse_B_vals_r
[function]
[call site]
04014
sam_parse_B_vals_r
[function]
[call site]
04015
sam_parse_B_vals_r
[function]
[call site]
04016
hts_log
[function]
[call site]
04017
isspace_c
[function]
[call site]
04018
hts_strprint
[function]
[call site]
04019
hts_log
[function]
[call site]
04020
isspace_c
[function]
[call site]
04021
hts_log
[function]
[call site]
04022
bam_tag2cigar
[function]
[call site]
04023
sam_state_destroy
[function]
[call site]
04024
__errno_location
[call site]
04025
bgzf_seek
[function]
[call site]
04026
bgzf_seek_common
[function]
[call site]
04027
sam_hdr_fill_hrecs
[function]
[call site]
04028
pthread_create
[call site]
04029
sam_dispatcher_read
[function]
[call site]
04030
ks_resize
[function]
[call site]
04031
pthread_mutex_lock
[call site]
04032
pthread_cond_signal
[call site]
04033
hts_tpool_process_shutdown
[function]
[call site]
04034
pthread_mutex_lock
[call site]
04035
pthread_mutex_unlock
[call site]
04036
calloc
[call site]
04037
hts_malloc_ps
[function]
[call site]
04038
hts_realloc_ps
[function]
[call site]
04039
hts_add_sat2
[function]
[call site]
04040
hts_prod_sat2
[function]
[call site]
04041
hts_realloc
[function]
[call site]
04042
bgzf_read
[function]
[call site]
04043
hread
[function]
[call site]
04044
__errno_location
[call site]
04045
sam_state_err
[function]
[call site]
04046
hts_realloc_pse
[function]
[call site]
04047
hts_add_sat2
[function]
[call site]
04048
hts_prod_sat2
[function]
[call site]
04049
hts_add_sat2
[function]
[call site]
04050
hts_realloc
[function]
[call site]
04051
__assert_fail
[call site]
04052
__assert_fail
[call site]
04053
__assert_fail
[call site]
04054
ks_resize
[function]
[call site]
04055
hts_tpool_dispatch3
[function]
[call site]
04056
sam_parse_worker
[function]
[call site]
04057
pthread_mutex_lock
[call site]
04058
pthread_mutex_unlock
[call site]
04059
calloc
[call site]
04060
calloc
[call site]
04061
sam_state_err
[function]
[call site]
04062
sam_state_err
[function]
[call site]
04063
hts_realloc_p
[function]
[call site]
04064
sam_state_err
[function]
[call site]
04065
strchr
[call site]
04066
sam_parse1
[function]
[call site]
04067
__errno_location
[call site]
04068
sam_state_err
[function]
[call site]
04069
cleanup_sp_lines
[function]
[call site]
04070
__assert_fail
[call site]
04071
sam_free_sp_bams
[function]
[call site]
04072
pthread_mutex_lock
[call site]
04073
pthread_mutex_unlock
[call site]
04074
sam_free_sp_bams
[function]
[call site]
04075
cleanup_sp_lines
[function]
[call site]
04076
cleanup_sp_bams
[function]
[call site]
04077
sam_free_sp_bams
[function]
[call site]
04078
pthread_mutex_lock
[call site]
04079
pthread_mutex_unlock
[call site]
04080
pthread_mutex_unlock
[call site]
04081
hts_tpool_dispatch
[function]
[call site]
04082
sam_parse_eof
[function]
[call site]
04083
pthread_mutex_lock
[call site]
04084
pthread_cond_wait
[call site]
04085
pthread_cond_signal
[call site]
04086
pthread_mutex_unlock
[call site]
04087
hts_tpool_process_shutdown
[function]
[call site]
04088
pthread_mutex_unlock
[call site]
04089
pthread_mutex_lock
[call site]
04090
pthread_cond_signal
[call site]
04091
pthread_mutex_unlock
[call site]
04092
pthread_mutex_lock
[call site]
04093
pthread_mutex_unlock
[call site]
04094
__errno_location
[call site]
04095
sam_state_err
[function]
[call site]
04096
hts_tpool_process_shutdown
[function]
[call site]
04097
hts_log
[function]
[call site]
04098
__errno_location
[call site]
04099
pthread_mutex_lock
[call site]
04100
pthread_mutex_unlock
[call site]
04101
hts_tpool_next_result_wait
[function]
[call site]
04102
hts_tpool_result_data
[function]
[call site]
04103
hts_tpool_delete_result
[function]
[call site]
04104
pthread_mutex_lock
[call site]
04105
pthread_mutex_unlock
[call site]
04106
bam_copy1
[function]
[call site]
04107
pthread_mutex_lock
[call site]
04108
pthread_mutex_unlock
[call site]
04109
hts_getline
[function]
[call site]
04110
sam_parse1
[function]
[call site]
04111
hts_log
[function]
[call site]
04112
fastq_state_init
[function]
[call site]
04113
fastq_parse1
[function]
[call site]
04114
hts_getline
[function]
[call site]
04115
strpbrk
[call site]
04116
isspace_c
[function]
[call site]
04117
isspace_c
[function]
[call site]
04118
hts_getline
[function]
[call site]
04119
kputsn
[function]
[call site]
04120
hts_getline
[function]
[call site]
04121
kputsn
[function]
[call site]
04122
isdigit_c
[function]
[call site]
04123
regexec
[call site]
04124
hts_log
[function]
[call site]
04125
isalpha_c
[function]
[call site]
04126
bam_set1
[function]
[call site]
04127
bam_aux_append
[function]
[call site]
04128
__assert_fail
[call site]
04129
realloc_bam_data
[function]
[call site]
04130
__errno_location
[call site]
04131
isdigit_c
[function]
[call site]
04132
strtol
[call site]
04133
isdigit_c
[function]
[call site]
04134
isspace_c
[function]
[call site]
04135
bam_aux_append
[function]
[call site]
04136
aux_parse
[function]
[call site]
04137
__errno_location
[call site]
04138
__errno_location
[call site]
04139
sam_passes_filter
[function]
[call site]
04140
hts_filter_eval2
[function]
[call site]
04141
ks_free
[function]
[call site]
04142
hts_filter_eval_
[function]
[call site]
04143
expression
[function]
[call site]
04144
and_expr
[function]
[call site]
04145
eq_expr
[function]
[call site]
04146
cmp_expr
[function]
[call site]
04147
bitor_expr
[function]
[call site]
04148
bitxor_expr
[function]
[call site]
04149
bitand_expr
[function]
[call site]
04150
add_expr
[function]
[call site]
04151
mul_expr
[function]
[call site]
04152
unary_expr
[function]
[call site]
04153
ws
[function]
[call site]
04154
simple_expr
[function]
[call site]
04155
ws
[function]
[call site]
04156
expression
[function]
[call site]
04157
ws
[function]
[call site]
04158
fprintf
[call site]
04159
hts_str2dbl
[function]
[call site]
04160
ks_clear
[function]
[call site]
04164
kputsn
[function]
[call site]
04165
func_expr
[function]
[call site]
04166
strncmp
[call site]
04167
expression
[function]
[call site]
04168
expr_func_avg
[function]
[call site]
04169
strncmp
[call site]
04170
expression
[function]
[call site]
04171
ws
[function]
[call site]
04172
expression
[function]
[call site]
04173
hts_expr_val_existsT
[function]
[call site]
04174
hts_expr_val_exists
[function]
[call site]
04175
hts_expr_val_free
[function]
[call site]
04176
ks_free
[function]
[call site]
04177
strncmp
[call site]
04178
expression
[function]
[call site]
04179
hts_expr_val_existsT
[function]
[call site]
04180
strncmp
[call site]
04181
expression
[function]
[call site]
04182
exp
[call site]
04183
hts_expr_val_undef
[function]
[call site]
04184
ks_clear
[function]
[call site]
04185
strncmp
[call site]
04186
expression
[function]
[call site]
04187
expr_func_length
[function]
[call site]
04188
strncmp
[call site]
04189
expression
[function]
[call site]
04190
log
[call site]
04191
hts_expr_val_undef
[function]
[call site]
04192
strncmp
[call site]
04193
expression
[function]
[call site]
04194
expr_func_min
[function]
[call site]
04195
strncmp
[call site]
04196
expression
[function]
[call site]
04197
expr_func_max
[function]
[call site]
04198
strncmp
[call site]
04199
expression
[function]
[call site]
04200
ws
[function]
[call site]
04201
expression
[function]
[call site]
04202
hts_expr_val_exists
[function]
[call site]
04203
hts_expr_val_undef
[function]
[call site]
04204
hts_expr_val_free
[function]
[call site]
04205
pow
[call site]
04206
hts_expr_val_free
[function]
[call site]
04207
hts_expr_val_undef
[function]
[call site]
04208
strncmp
[call site]
04209
expression
[function]
[call site]
04210
sqrt
[call site]
04211
hts_expr_val_undef
[function]
[call site]
04212
ws
[function]
[call site]
04213
fprintf
[call site]
04214
hts_expr_val_exists
[function]
[call site]
04215
hts_expr_val_undef
[function]
[call site]
04216
unary_expr
[function]
[call site]
04217
hts_expr_val_exists
[function]
[call site]
04218
unary_expr
[function]
[call site]
04219
hts_expr_val_exists
[function]
[call site]
04220
hts_expr_val_undef
[function]
[call site]
04221
hts_expr_val_exists
[function]
[call site]
04222
hts_expr_val_undef
[function]
[call site]
04223
simple_expr
[function]
[call site]
04224
ws
[function]
[call site]
04225
unary_expr
[function]
[call site]
04226
hts_expr_val_exists
[function]
[call site]
04227
hts_expr_val_undef
[function]
[call site]
04228
hts_expr_val_free
[function]
[call site]
04229
hts_expr_val_undef
[function]
[call site]
04230
hts_expr_val_exists
[function]
[call site]
04231
hts_expr_val_free
[function]
[call site]
04232
ws
[function]
[call site]
04233
mul_expr
[function]
[call site]
04234
hts_expr_val_exists
[function]
[call site]
04235
hts_expr_val_free
[function]
[call site]
04236
hts_expr_val_undef
[function]
[call site]
04237
hts_expr_val_free
[function]
[call site]
04238
ws
[function]
[call site]
04239
add_expr
[function]
[call site]
04240
hts_expr_val_exists
[function]
[call site]
04241
hts_expr_val_free
[function]
[call site]
04242
hts_expr_val_free
[function]
[call site]
04243
hts_expr_val_undef
[function]
[call site]
04244
ws
[function]
[call site]
04245
bitand_expr
[function]
[call site]
04246
hts_expr_val_exists
[function]
[call site]
04247
hts_expr_val_free
[function]
[call site]
04248
hts_expr_val_free
[function]
[call site]
04249
hts_expr_val_undef
[function]
[call site]
04250
ws
[function]
[call site]
04251
bitxor_expr
[function]
[call site]
04252
hts_expr_val_exists
[function]
[call site]
04253
hts_expr_val_free
[function]
[call site]
04254
hts_expr_val_free
[function]
[call site]
04255
hts_expr_val_undef
[function]
[call site]
04256
ws
[function]
[call site]
04257
cmp_expr
[function]
[call site]
04258
hts_expr_val_exists
[function]
[call site]
04259
hts_expr_val_undef
[function]
[call site]
04260
strcmp
[call site]
04261
cmp_expr
[function]
[call site]
04262
hts_expr_val_exists
[function]
[call site]
04263
hts_expr_val_undef
[function]
[call site]
04264
strcmp
[call site]
04265
cmp_expr
[function]
[call site]
04266
hts_expr_val_exists
[function]
[call site]
04267
hts_expr_val_undef
[function]
[call site]
04268
strcmp
[call site]
04269
cmp_expr
[function]
[call site]
04270
hts_expr_val_exists
[function]
[call site]
04271
hts_expr_val_undef
[function]
[call site]
04272
strcmp
[call site]
04273
hts_expr_val_exists
[function]
[call site]
04274
hts_expr_val_undef
[function]
[call site]
04275
hts_expr_val_free
[function]
[call site]
04276
ws
[function]
[call site]
04277
eq_expr
[function]
[call site]
04278
hts_expr_val_exists
[function]
[call site]
04279
hts_expr_val_undef
[function]
[call site]
04280
strcmp
[call site]
04281
eq_expr
[function]
[call site]
04282
hts_expr_val_exists
[function]
[call site]
04283
hts_expr_val_undef
[function]
[call site]
04284
strcmp
[call site]
04285
eq_expr
[function]
[call site]
04286
hts_expr_val_free
[function]
[call site]
04287
regcomp
[call site]
04288
regerror
[call site]
04289
fprintf
[call site]
04290
hts_expr_val_free
[function]
[call site]
04291
regexec
[call site]
04292
regfree
[call site]
04293
hts_expr_val_exists
[function]
[call site]
04294
hts_expr_val_undef
[function]
[call site]
04295
hts_expr_val_free
[function]
[call site]
04296
ws
[function]
[call site]
04297
eq_expr
[function]
[call site]
04298
hts_expr_val_existsT
[function]
[call site]
04299
hts_expr_val_undef
[function]
[call site]
04300
eq_expr
[function]
[call site]
04301
hts_expr_val_existsT
[function]
[call site]
04302
hts_expr_val_undef
[function]
[call site]
04303
hts_expr_val_existsT
[function]
[call site]
04304
hts_expr_val_undef
[function]
[call site]
04305
hts_expr_val_existsT
[function]
[call site]
04306
hts_expr_val_undef
[function]
[call site]
04307
hts_expr_val_free
[function]
[call site]
04308
ws
[function]
[call site]
04309
fprintf
[call site]
04310
hts_expr_val_exists
[function]
[call site]
04311
bam_sym_lookup
[function]
[call site]
04312
memcmp
[call site]
04313
ks_clear
[function]
[call site]
04314
kputw
[function]
[call site]
04315
kputc_
[function]
[call site]
04316
kputs
[function]
[call site]
04317
kputs
[function]
[call site]
04318
memcmp
[call site]
04319
bam_endpos
[function]
[call site]
04320
memcmp
[call site]
04321
memcmp
[call site]
04322
memcmp
[call site]
04323
memcmp
[call site]
04324
memcmp
[call site]
04325
memcmp
[call site]
04326
memcmp
[call site]
04327
memcmp
[call site]
04328
memcmp
[call site]
04329
memcmp
[call site]
04330
memcmp
[call site]
04331
memcmp
[call site]
04332
memcmp
[call site]
04333
hts_log
[function]
[call site]
04334
memcmp
[call site]
04335
memcmp
[call site]
04336
bam_get_library
[function]
[call site]
04337
bam_aux_get
[function]
[call site]
04338
sam_hdr_find_tag_id
[function]
[call site]
04339
ks_clear
[function]
[call site]
04340
kputs
[function]
[call site]
04341
memcmp
[call site]
04342
memcmp
[call site]
04343
memcmp
[call site]
04344
sam_hdr_tid2name
[function]
[call site]
04345
ks_clear
[function]
[call site]
04346
kputs
[function]
[call site]
04347
memcmp
[call site]
04348
memcmp
[call site]
04349
memcmp
[call site]
04350
memcmp
[call site]
04351
memcmp
[call site]
04352
bam_cigar2qlen
[function]
[call site]
04353
memcmp
[call site]
04354
ks_clear
[function]
[call site]
04355
kputs
[function]
[call site]
04356
memcmp
[call site]
04357
ks_clear
[function]
[call site]
04358
ks_resize
[function]
[call site]
04359
memcmp
[call site]
04360
bam_cigar2rlen
[function]
[call site]
04361
memcmp
[call site]
04362
sam_hdr_tid2name
[function]
[call site]
04363
ks_clear
[function]
[call site]
04364
kputs
[function]
[call site]
04365
memcmp
[call site]
04366
sam_hdr_tid2name
[function]
[call site]
04367
ks_clear
[function]
[call site]
04368
kputs
[function]
[call site]
04369
memcmp
[call site]
04370
memcmp
[call site]
04371
ks_clear
[function]
[call site]
04372
ks_resize
[function]
[call site]
04373
nibble2base
[function]
[call site]
04374
memcmp
[call site]
04375
memcmp
[call site]
04376
bam_aux_get
[function]
[call site]
04377
ks_clear
[function]
[call site]
04378
kputs
[function]
[call site]
04379
ks_clear
[function]
[call site]
04380
kputsn
[function]
[call site]
04381
bam_aux2i
[function]
[call site]
04382
get_int_aux_val
[function]
[call site]
04383
le_to_i8
[function]
[call site]
04384
le_to_i16
[function]
[call site]
04385
le_to_u16
[function]
[call site]
04386
le_to_i32
[function]
[call site]
04387
le_to_u32
[function]
[call site]
04388
__errno_location
[call site]
04389
bam_aux2f
[function]
[call site]
04390
le_to_double
[function]
[call site]
04391
le_to_float
[function]
[call site]
04392
get_int_aux_val
[function]
[call site]
04393
hts_log
[function]
[call site]
04394
hts_log
[function]
[call site]
04395
hts_expr_val_free
[function]
[call site]
04396
hts_expr_val_free
[function]
[call site]
04397
sam_write1
[function]
[call site]
04398
bam_write_idx1
[function]
[call site]
04399
bam_write1
[function]
[call site]
04400
hts_log
[function]
[call site]
04401
__errno_location
[call site]
04402
bgzf_flush_try
[function]
[call site]
04403
lazy_flush
[function]
[call site]
04404
ed_swap_4p
[function]
[call site]
04405
ed_swap_4p
[function]
[call site]
04406
bgzf_write_small
[function]
[call site]
04407
bgzf_write
[function]
[call site]
04408
swap_data
[function]
[call site]
04409
bgzf_write_small
[function]
[call site]
04410
bgzf_write_small
[function]
[call site]
04411
bgzf_write_small
[function]
[call site]
04412
bgzf_write_small
[function]
[call site]
04413
bam_cigar2rlen
[function]
[call site]
04414
hts_log
[function]
[call site]
04415
u32_to_le
[function]
[call site]
04416
u32_to_le
[function]
[call site]
04417
bgzf_write_small
[function]
[call site]
04418
bgzf_write_small
[function]
[call site]
04419
bgzf_write_small
[function]
[call site]
04420
u32_to_le
[function]
[call site]
04421
bgzf_write_small
[function]
[call site]
04422
bgzf_write_small
[function]
[call site]
04423
swap_data
[function]
[call site]
04424
bgzf_flush_try
[function]
[call site]
04425
hts_idx_amend_last
[function]
[call site]
04426
bam_write1
[function]
[call site]
04427
bam_endpos
[function]
[call site]
04428
bgzf_idx_push
[function]
[call site]
04429
hts_idx_push
[function]
[call site]
04430
hts_idx_check_range
[function]
[call site]
04431
hts_idx_maxpos
[function]
[call site]
04432
hts_bin_maxpos
[function]
[call site]
04433
hts_log
[function]
[call site]
04434
idx_format_name
[function]
[call site]
04435
hts_log
[function]
[call site]
04436
__errno_location
[call site]
04437
hts_realloc_p
[function]
[call site]
04438
hts_realloc_p
[function]
[call site]
04439
hts_log
[function]
[call site]
04440
hts_log
[function]
[call site]
04441
hts_log
[function]
[call site]
04442
hts_log
[function]
[call site]
04443
kh_init_bin
[function]
[call site]
04444
calloc
[call site]
04445
insert_to_l
[function]
[call site]
04446
hts_realloc_p
[function]
[call site]
04447
hts_reg2bin
[function]
[call site]
04448
insert_to_b
[function]
[call site]
04449
kh_put_bin
[function]
[call site]
04450
kh_resize_bin
[function]
[call site]
04451
__errno_location
[call site]
04452
realloc
[call site]
04453
calloc
[call site]
04454
kh_del_bin
[function]
[call site]
04455
hts_realloc_p
[function]
[call site]
04456
insert_to_b
[function]
[call site]
04457
insert_to_b
[function]
[call site]
04458
hts_idx_check_range
[function]
[call site]
04459
pthread_mutex_lock
[call site]
04460
hts_realloc_p
[function]
[call site]
04461
pthread_mutex_unlock
[call site]
04462
pthread_mutex_unlock
[call site]
04463
sam_hdr_tid2name
[function]
[call site]
04464
sam_hdr_tid2len
[function]
[call site]
04465
kh_get_s2i
[function]
[call site]
04466
hts_log
[function]
[call site]
04467
cram_put_bam_seq
[function]
[call site]
04468
cram_new_container
[function]
[call site]
04469
pthread_mutex_lock
[call site]
04470
pthread_mutex_unlock
[call site]
04471
hts_log
[function]
[call site]
04472
pthread_mutex_lock
[call site]
04473
hts_log
[function]
[call site]
04474
pthread_mutex_unlock
[call site]
04475
cram_next_container
[function]
[call site]
04476
cram_update_curr_slice
[function]
[call site]
04477
hts_log
[function]
[call site]
04478
cram_flush_container_mt
[function]
[call site]
04479
cram_free_slice
[function]
[call site]
04480
cram_free_container
[function]
[call site]
04481
cram_new_container
[function]
[call site]
04482
pthread_mutex_lock
[call site]
04483
pthread_mutex_unlock
[call site]
04484
cram_new_slice
[function]
[call site]
04485
calloc
[call site]
04486
calloc
[call site]
04487
hts_malloc_p
[function]
[call site]
04488
hts_malloc_p
[function]
[call site]
04489
cram_new_block
[function]
[call site]
04490
cram_new_block
[function]
[call site]
04491
cram_new_block
[function]
[call site]
04492
cram_new_block
[function]
[call site]
04493
cram_new_block
[function]
[call site]
04494
cram_new_block
[function]
[call site]
04495
string_pool_create
[function]
[call site]
04496
kh_init_m_s2i
[function]
[call site]
04497
kh_init_m_s2i
[function]
[call site]
04498
cram_free_slice
[function]
[call site]
04499
pthread_mutex_lock
[call site]
04500
hts_log
[function]
[call site]
04501
pthread_mutex_unlock
[call site]
04502
pthread_mutex_lock
[call site]
04503
calloc
[call site]
04504
pthread_mutex_unlock
[call site]
04505
pthread_mutex_lock
[call site]
04506
calloc
[call site]
04507
pthread_mutex_unlock
[call site]
04508
pthread_mutex_lock
[call site]
04509
pthread_mutex_unlock
[call site]
04510
pthread_mutex_lock
[call site]
04511
hts_realloc_p
[function]
[call site]
04512
pthread_mutex_unlock
[call site]
04513
bam_set_mempolicy
[function]
[call site]
04514
calloc
[call site]
04515
pthread_mutex_unlock
[call site]
04516
bam_set_mempolicy
[function]
[call site]
04517
pthread_mutex_unlock
[call site]
04518
bam_copy1
[function]
[call site]
04519
bam_cigar2qlen
[function]
[call site]
04520
hts_log
[function]
[call site]
04521
pthread_create
[call site]
04522
sam_dispatcher_write
[function]
[call site]
04523
hts_tpool_next_result_wait
[function]
[call site]
04524
hts_tpool_result_data
[function]
[call site]
04525
sam_state_err
[function]
[call site]
04526
bgzf_flush_try
[function]
[call site]
04527
bgzf_write
[function]
[call site]
04528
hwrite
[function]
[call site]
04529
bam_endpos
[function]
[call site]
04530
bgzf_idx_push
[function]
[call site]
04531
__errno_location
[call site]
04532
sam_state_err
[function]
[call site]
04533
sam_hdr_tid2name
[function]
[call site]
04534
sam_hdr_tid2len
[function]
[call site]
04535
hts_log
[function]
[call site]
04536
bam_endpos
[function]
[call site]
04537
hts_idx_push
[function]
[call site]
04538
__errno_location
[call site]
04539
sam_state_err
[function]
[call site]
04540
sam_hdr_tid2name
[function]
[call site]
04541
sam_hdr_tid2len
[function]
[call site]
04542
hts_log
[function]
[call site]
04543
__assert_fail
[call site]
04544
pthread_mutex_lock
[call site]
04545
pthread_mutex_unlock
[call site]
04546
bgzf_write
[function]
[call site]
04547
bgzf_flush_try
[function]
[call site]
04548
bgzf_write
[function]
[call site]
04549
hwrite
[function]
[call site]
04550
hts_tpool_delete_result
[function]
[call site]
04551
pthread_mutex_lock
[call site]
04552
pthread_mutex_unlock
[call site]
04553
sam_state_err
[function]
[call site]
04554
hts_tpool_process_shutdown
[function]
[call site]
04555
sam_state_err
[function]
[call site]
04556
hts_log
[function]
[call site]
04557
pthread_mutex_lock
[call site]
04558
pthread_mutex_unlock
[call site]
04559
pthread_mutex_unlock
[call site]
04560
calloc
[call site]
04561
calloc
[call site]
04562
bam_copy1
[function]
[call site]
04563
pthread_mutex_lock
[call site]
04564
pthread_mutex_unlock
[call site]
04565
hts_tpool_dispatch3
[function]
[call site]
04566
sam_format_worker
[function]
[call site]
04567
cleanup_sp_bams
[function]
[call site]
04568
cleanup_sp_lines
[function]
[call site]
04569
pthread_mutex_unlock
[call site]
04570
pthread_mutex_unlock
[call site]
04571
sam_format1
[function]
[call site]
04572
sam_format1_append
[function]
[call site]
04573
kputc
[function]
[call site]
04574
bgzf_flush_try
[function]
[call site]
04575
bgzf_write
[function]
[call site]
04576
hwrite
[function]
[call site]
04577
bam_endpos
[function]
[call site]
04578
bgzf_idx_push
[function]
[call site]
04579
sam_hdr_tid2name
[function]
[call site]
04580
sam_hdr_tid2len
[function]
[call site]
04581
hts_log
[function]
[call site]
04582
bam_endpos
[function]
[call site]
04583
hts_idx_push
[function]
[call site]
04584
sam_hdr_tid2name
[function]
[call site]
04585
sam_hdr_tid2len
[function]
[call site]
04586
hts_log
[function]
[call site]
04587
fastq_state_init
[function]
[call site]
04588
fastq_format1
[function]
[call site]
04589
kputc
[function]
[call site]
04590
kputs
[function]
[call site]
04591
bam_aux_get
[function]
[call site]
04592
kputc
[function]
[call site]
04593
isalpha_c
[function]
[call site]
04594
toupper_c
[function]
[call site]
04595
kputc
[function]
[call site]
04596
kputs
[function]
[call site]
04597
kputs
[function]
[call site]
04598
kputs
[function]
[call site]
04599
bam_aux_get
[function]
[call site]
04600
ksprintf
[function]
[call site]
04601
isupper_c
[function]
[call site]
04602
__ctype_b_loc
[call site]
04603
islower_c
[function]
[call site]
04604
__ctype_b_loc
[call site]
04605
hts_log
[function]
[call site]
04606
strlen
[call site]
04607
strlen
[call site]
04608
isalpha_c
[function]
[call site]
04609
islower_c
[function]
[call site]
04610
toupper_c
[function]
[call site]
04611
kh_get_tag
[function]
[call site]
04612
kputc_
[function]
[call site]
04613
sam_format_aux1
[function]
[call site]
04614
skip_aux
[function]
[call site]
04615
kputsn
[function]
[call site]
04616
ks_resize
[function]
[call site]
04617
kputc_
[function]
[call site]
04618
kputc_
[function]
[call site]
04619
kputc_
[function]
[call site]
04620
kputsn
[function]
[call site]
04621
kputc_
[function]
[call site]
04622
kputc_
[function]
[call site]
04623
kputc_
[function]
[call site]
04624
kputc
[function]
[call site]
04625
bgzf_flush_try
[function]
[call site]
04626
bgzf_write
[function]
[call site]
04627
hwrite
[function]
[call site]
04628
__errno_location
[call site]
04629
bam_destroy1
[function]
[call site]
04630
sam_hdr_destroy
[function]
[call site]
04631
hts_close_or_abort
[function]
[call site]
04632
hts_close
[function]
[call site]
04633
hts_close
[function]
[call site]
04634
view_sam
[function]
[call site]
04635
view_sam
[function]
[call site]
04636
view_vcf
[function]
[call site]
04637
abort
[call site]
04638
hopen
[function]
[call site]
04639
hts_hopen
[function]
[call site]
04640
hclose
[function]
[call site]
04641
abort
[call site]
04642
hts_open
[function]
[call site]
04643
abort
[call site]
04644
bcf_hdr_read
[function]
[call site]
04645
vcf_hdr_read
[function]
[call site]
04646
bcf_hdr_init
[function]
[call site]
04647
calloc
[call site]
04648
kh_init_vdict
[function]
[call site]
04649
calloc
[call site]
04650
kh_resize_vdict
[function]
[call site]
04651
__errno_location
[call site]
04652
realloc
[call site]
04653
__ac_FNV1a_hash_string
[function]
[call site]
04654
calloc
[call site]
04655
kh_init_hdict
[function]
[call site]
04656
strchr
[call site]
04657
bcf_hdr_append
[function]
[call site]
04658
bcf_hdr_parse_line
[function]
[call site]
04659
calloc
[call site]
04660
hts_malloc_ps
[function]
[call site]
04661
hts_malloc_p
[function]
[call site]
04662
isalpha_c
[function]
[call site]
04663
isalnum_c
[function]
[call site]
04664
bcf_hrec_add_key
[function]
[call site]
04665
__assert_fail
[call site]
04666
hts_realloc_p
[function]
[call site]
04667
hts_realloc_p
[function]
[call site]
04668
hts_malloc_ps
[function]
[call site]
04669
is_escaped
[function]
[call site]
04670
hts_strprint
[function]
[call site]
04671
hts_log
[function]
[call site]
04672
bcf_hrec_set_val
[function]
[call site]
04673
__errno_location
[call site]
04674
hts_malloc_ps
[function]
[call site]
04675
__errno_location
[call site]
04676
hts_malloc_ps
[function]
[call site]
04677
hts_log
[function]
[call site]
04678
isspace_c
[function]
[call site]
04679
hts_strprint
[function]
[call site]
04680
hts_log
[function]
[call site]
04681
bcf_hrec_destroy
[function]
[call site]
04682
hts_strprint
[function]
[call site]
04683
hts_log
[function]
[call site]
04684
bcf_hrec_destroy
[function]
[call site]
04685
bcf_hdr_add_hrec
[function]
[call site]
04686
get_hdr_aux
[function]
[call site]
04687
bcf_hrec_check
[function]
[call site]
04688
bcf_hrec_set_type
[function]
[call site]
04689
strcmp
[call site]
04690
strcmp
[call site]
04691
strcmp
[call site]
04692
strcmp
[call site]
04693
bcf_hrec_find_key
[function]
[call site]
04694
strcasecmp
[call site]
04695
bcf_hrec_find_key
[function]
[call site]
04696
strcmp
[call site]
04697
bcf_hrec_find_key
[function]
[call site]
04698
hts_log
[function]
[call site]
04699
hts_log
[function]
[call site]
04700
hts_log
[function]
[call site]
04701
bcf_hdr_register_hrec
[function]
[call site]
04702
bcf_hrec_set_type
[function]
[call site]
04703
bcf_hrec_find_key
[function]
[call site]
04704
strtoll
[call site]
04705
bcf_hrec_find_key
[function]
[call site]
04706
strdup
[call site]
04707
kh_get_vdict
[function]
[call site]
04708
strcmp
[call site]
04709
kh_put_vdict
[function]
[call site]
04710
kh_resize_vdict
[function]
[call site]
04711
bcf_hrec_find_key
[function]
[call site]
04712
strtol
[call site]
04713
kh_del_vdict
[function]
[call site]
04714
hts_log
[function]
[call site]
04715
bcf_hdr_set_idx
[function]
[call site]
04716
hts_log
[function]
[call site]
04717
__errno_location
[call site]
04718
hts_resize_array_
[function]
[call site]
04719
hts_log
[function]
[call site]
04720
__errno_location
[call site]
04721
realloc
[call site]
04722
__errno_location
[call site]
04723
__errno_location
[call site]
04724
strerror
[call site]
04725
hts_log
[function]
[call site]
04726
__errno_location
[call site]
04727
abort
[call site]
04728
abort
[call site]
04729
kh_del_vdict
[function]
[call site]
04730
hrec_add_idx
[function]
[call site]
04731
hts_realloc_p
[function]
[call site]
04732
hts_realloc_p
[function]
[call site]
04733
strdup
[call site]
04734
kputw
[function]
[call site]
04735
strcmp
[call site]
04736
strcmp
[call site]
04737
strtol
[call site]
04738
hts_log
[function]
[call site]
04739
strcmp
[call site]
04740
strcmp
[call site]
04741
strcmp
[call site]
04742
strcmp
[call site]
04743
strcmp
[call site]
04744
strcmp
[call site]
04745
hts_log
[function]
[call site]
04746
strcmp
[call site]
04747
strcmp
[call site]
04748
strcmp
[call site]
04749
strcmp
[call site]
04750
strcmp
[call site]
04751
strcmp
[call site]
04752
strcmp
[call site]
04753
strcmp
[call site]
04754
strcmp
[call site]
04755
strcmp
[call site]
04756
__isoc99_sscanf
[call site]
04757
hts_log
[function]
[call site]
04758
hts_log
[function]
[call site]
04759
hts_log
[function]
[call site]
04760
strdup
[call site]
04761
kh_get_vdict
[function]
[call site]
04762
hrec_add_idx
[function]
[call site]
04763
kh_put_vdict
[function]
[call site]
04764
bcf_hdr_set_idx
[function]
[call site]
04765
kh_del_vdict
[function]
[call site]
04766
hrec_add_idx
[function]
[call site]
04767
bcf_hrec_destroy
[function]
[call site]
04768
ksprintf
[function]
[call site]
04769
kh_get_hdict
[function]
[call site]
04770
bcf_hrec_destroy
[function]
[call site]
04771
strcmp
[call site]
04772
bcf_get_version
[function]
[call site]
04773
get_hdr_aux
[function]
[call site]
04774
bcf_hdr_get_version
[function]
[call site]
04775
bcf_hdr_get_hrec
[function]
[call site]
04776
ksprintf
[function]
[call site]
04777
get_hdr_aux
[function]
[call site]
04778
kh_get_hdict
[function]
[call site]
04779
strcmp
[call site]
04780
strcmp
[call site]
04781
ksprintf
[function]
[call site]
04782
get_hdr_aux
[function]
[call site]
04783
kh_get_hdict
[function]
[call site]
04784
strcmp
[call site]
04785
bcf_hrec_find_key
[function]
[call site]
04786
strcmp
[call site]
04787
kh_get_vdict
[function]
[call site]
04788
hts_log
[function]
[call site]
04789
strstr
[call site]
04790
strchr
[call site]
04791
strtol
[call site]
04792
__errno_location
[call site]
04793
__errno_location
[call site]
04794
strtol
[call site]
04795
__errno_location
[call site]
04796
hts_log
[function]
[call site]
04797
bcf_hrec_find_key
[function]
[call site]
04798
ksprintf
[function]
[call site]
04799
kh_get_hdict
[function]
[call site]
04800
bcf_hrec_destroy
[function]
[call site]
04801
hts_realloc_p
[function]
[call site]
04802
bcf_hdr_unregister_hrec
[function]
[call site]
04803
bcf_hrec_find_key
[function]
[call site]
04804
kh_get_vdict
[function]
[call site]
04805
kh_put_hdict
[function]
[call site]
04806
kh_resize_hdict
[function]
[call site]
04807
bcf_hdr_append
[function]
[call site]
04808
kh_destroy_vdict
[function]
[call site]
04809
hts_getline
[function]
[call site]
04810
hts_log
[function]
[call site]
04811
hopen
[function]
[call site]
04812
khgetline
[function]
[call site]
04813
strchr
[call site]
04814
kputs
[function]
[call site]
04815
kputsn
[function]
[call site]
04816
kputs
[function]
[call site]
04817
atol
[call site]
04818
kputl
[function]
[call site]
04819
kputll
[function]
[call site]
04820
kputsn
[function]
[call site]
04821
hclose
[function]
[call site]
04822
hts_log
[function]
[call site]
04823
kputsn
[function]
[call site]
04824
kputc
[function]
[call site]
04825
hts_log
[function]
[call site]
04826
bcf_hdr_parse
[function]
[call site]
04827
bcf_hdr_parse_line
[function]
[call site]
04828
strcasecmp
[call site]
04829
hts_log
[function]
[call site]
04830
bcf_hdr_add_hrec
[function]
[call site]
04831
bcf_hrec_destroy
[function]
[call site]
04832
bcf_hdr_parse_line
[function]
[call site]
04833
bcf_hdr_add_hrec
[function]
[call site]
04834
bcf_hrec_destroy
[function]
[call site]
04835
bcf_hdr_parse_line
[function]
[call site]
04836
bcf_hdr_add_hrec
[function]
[call site]
04837
bcf_hrec_destroy
[function]
[call site]
04838
__assert_fail
[call site]
04839
__errno_location
[call site]
04840
strerror
[call site]
04841
hts_log
[function]
[call site]
04842
strncmp
[call site]
04843
strchr
[call site]
04844
hts_strprint
[function]
[call site]
04845
hts_log
[function]
[call site]
04846
hts_log
[function]
[call site]
04847
bcf_hdr_parse_sample_line
[function]
[call site]
04848
strlen
[call site]
04849
strncmp
[call site]
04850
hts_log
[function]
[call site]
04851
strlen
[call site]
04852
strncmp
[call site]
04853
hts_log
[function]
[call site]
04854
bcf_hdr_add_sample_len
[function]
[call site]
04855
isspace_c
[function]
[call site]
04856
hts_realloc_ps
[function]
[call site]
04857
kh_put_vdict
[function]
[call site]
04858
hts_log
[function]
[call site]
04859
bcf_hdr_sync
[function]
[call site]
04860
hts_realloc_p
[function]
[call site]
04861
get_hdr_aux
[function]
[call site]
04862
bcf_hdr_check_sanity
[function]
[call site]
04863
bcf_get_version
[function]
[call site]
04864
bcf_hdr_id2int
[function]
[call site]
04865
kh_get_vdict
[function]
[call site]
04866
atoi
[call site]
04867
hts_log
[function]
[call site]
04868
hts_log
[function]
[call site]
04869
bcf_hdr_id2int
[function]
[call site]
04870
atoi
[call site]
04871
hts_log
[function]
[call site]
04872
hts_log
[function]
[call site]
04873
tbx_index_load3
[function]
[call site]
04874
index_load
[function]
[call site]
04875
calloc
[call site]
04876
hts_idx_load3
[function]
[call site]
04877
idx_find_and_load
[function]
[call site]
04878
strstr
[call site]
04879
strdup
[call site]
04880
__errno_location
[call site]
04881
strerror
[call site]
04882
hts_log
[function]
[call site]
04883
hts_idx_load3
[function]
[call site]
04884
hisremote
[function]
[call site]
04885
stat
[call site]
04886
hts_log
[function]
[call site]
04887
idx_test_and_fetch
[function]
[call site]
04888
hisremote
[function]
[call site]
04889
strncmp
[call site]
04890
strcspn
[call site]
04891
kputsn
[function]
[call site]
04892
access
[call site]
04893
hopen
[function]
[call site]
04894
hts_log
[function]
[call site]
04895
hts_detect_format2
[function]
[call site]
04896
hts_log
[function]
[call site]
04897
hts_log
[function]
[call site]
04898
hts_open_tmpfile
[function]
[call site]
04899
hts_log
[function]
[call site]
04900
hts_log
[function]
[call site]
04901
calloc
[call site]
04902
__errno_location
[call site]
04903
strerror
[call site]
04904
hread
[function]
[call site]
04905
hwrite
[function]
[call site]
04906
strerror
[call site]
04907
hts_log
[function]
[call site]
04908
hts_log
[function]
[call site]
04909
hclose
[function]
[call site]
04910
__errno_location
[call site]
04911
strerror
[call site]
04912
hts_log
[function]
[call site]
04913
rename
[call site]
04914
__errno_location
[call site]
04915
strerror
[call site]
04916
hts_log
[function]
[call site]
04917
ks_clear
[function]
[call site]
04918
hclose
[function]
[call site]
04919
hts_log
[function]
[call site]
04920
hopen
[function]
[call site]
04921
hclose_abruptly
[function]
[call site]
04922
strlen
[call site]
04923
__errno_location
[call site]
04924
hclose_abruptly
[function]
[call site]
04925
hclose_abruptly
[function]
[call site]
04926
unlink
[call site]
04927
__errno_location
[call site]
04928
strdup
[call site]
04929
idx_read
[function]
[call site]
04930
bgzf_open
[function]
[call site]
04931
ed_is_big
[function]
[call site]
04932
bgzf_read
[function]
[call site]
04933
memcmp
[call site]
04934
bgzf_read
[function]
[call site]
04935
ed_swap_4p
[function]
[call site]
04936
hts_malloc_ps
[function]
[call site]
04937
bgzf_read
[function]
[call site]
04938
bgzf_read
[function]
[call site]
04939
ed_swap_4p
[function]
[call site]
04940
hts_idx_init
[function]
[call site]
04941
idx_read_core
[function]
[call site]
04945
ed_is_big
[function]
[call site]
04946
kh_init_bin
[function]
[call site]
04947
bgzf_read
[function]
[call site]
04948
ed_swap_4p
[function]
[call site]
04949
bgzf_read
[function]
[call site]
04950
ed_swap_4p
[function]
[call site]
04951
kh_put_bin
[function]
[call site]
04952
bgzf_read
[function]
[call site]
04953
ed_swap_8p
[function]
[call site]
04954
bgzf_read
[function]
[call site]
04955
ed_swap_4p
[function]
[call site]
04956
hts_malloc_p
[function]
[call site]
04957
bgzf_read
[function]
[call site]
04958
swap_bins
[function]
[call site]
04959
ed_swap_8p
[function]
[call site]
04960
ed_swap_8p
[function]
[call site]
04961
bgzf_read
[function]
[call site]
04962
ed_swap_4p
[function]
[call site]
04963
hts_malloc_p
[function]
[call site]
04964
bgzf_read
[function]
[call site]
04965
ed_swap_8p
[function]
[call site]
04966
update_loff
[function]
[call site]
04967
hts_bin_bot
[function]
[call site]
04968
hts_bin_level
[function]
[call site]
04969
bgzf_read
[function]
[call site]
04970
ed_swap_8p
[function]
[call site]
04971
memcmp
[call site]
04972
bgzf_read
[function]
[call site]
04973
le_to_u32
[function]
[call site]
04974
hts_idx_init
[function]
[call site]
04975
le_to_u32
[function]
[call site]
04976
hts_malloc_ps
[function]
[call site]
04977
bgzf_read
[function]
[call site]
04978
idx_read_core
[function]
[call site]
04979
memcmp
[call site]
04980
bgzf_read
[function]
[call site]
04981
ed_swap_4p
[function]
[call site]
04982
hts_idx_init
[function]
[call site]
04983
idx_read_core
[function]
[call site]
04984
__errno_location
[call site]
04985
bgzf_close
[function]
[call site]
04986
bgzf_close
[function]
[call site]
04987
hts_idx_destroy
[function]
[call site]
04988
__errno_location
[call site]
04989
strerror
[call site]
04990
hts_log
[function]
[call site]
04991
hts_idx_check_local
[function]
[call site]
04992
hisremote
[function]
[call site]
04993
strlen
[call site]
04994
strncmp
[call site]
04995
strncmp
[call site]
04996
hts_log
[function]
[call site]
04997
strlen
[call site]
04998
calloc
[call site]
04999
strcpy
[call site]
05000
stat
[call site]
05001
strcpy
[call site]
05002
stat
[call site]
05003
strcpy
[call site]
05004
stat
[call site]
05005
strcpy
[call site]
05006
stat
[call site]
05007
strcpy
[call site]
05008
stat
[call site]
05009
strcpy
[call site]
05010
stat
[call site]
05011
strcpy
[call site]
05012
stat
[call site]
05013
strcpy
[call site]
05014
stat
[call site]
05015
strcpy
[call site]
05016
strcmp
[call site]
05017
strcmp
[call site]
05018
strcpy
[call site]
05019
stat
[call site]
05020
strcpy
[call site]
05021
stat
[call site]
05022
hisremote
[function]
[call site]
05023
idx_filename
[function]
[call site]
05024
haddextension
[function]
[call site]
05025
find_scheme_handler
[function]
[call site]
05026
strncmp
[call site]
05027
strcspn
[call site]
05028
strchr
[call site]
05029
strip_extension
[function]
[call site]
05030
kputsn
[function]
[call site]
05031
kputs
[function]
[call site]
05032
kputs
[function]
[call site]
05033
idx_test_and_fetch
[function]
[call site]
05034
haddextension
[function]
[call site]
05035
idx_test_and_fetch
[function]
[call site]
05036
idx_filename
[function]
[call site]
05037
idx_filename
[function]
[call site]
05038
idx_filename
[function]
[call site]
05039
idx_filename
[function]
[call site]
05040
idx_filename
[function]
[call site]
05041
hts_log
[function]
[call site]
05042
hts_idx_load3
[function]
[call site]
05043
idx_read
[function]
[call site]
05044
hts_idx_get_meta
[function]
[call site]
05045
le_to_i32
[function]
[call site]
05046
le_to_i32
[function]
[call site]
05047
le_to_i32
[function]
[call site]
05048
le_to_i32
[function]
[call site]
05049
le_to_i32
[function]
[call site]
05050
le_to_i32
[function]
[call site]
05051
le_to_u32
[function]
[call site]
05052
get_tid
[function]
[call site]
05053
kh_init_s2i
[function]
[call site]
05054
kh_put_s2i
[function]
[call site]
05055
strdup
[call site]
05056
kh_del_s2i
[function]
[call site]
05057
kh_get_s2i
[function]
[call site]
05058
__errno_location
[call site]
05059
strerror
[call site]
05060
hts_log
[function]
[call site]
05061
strlen
[call site]
05062
hts_log
[function]
[call site]
05063
tbx_destroy
[function]
[call site]
05064
hts_idx_destroy
[function]
[call site]
05065
kh_destroy_s2i
[function]
[call site]
05066
tbx_seqnames
[function]
[call site]
05067
calloc
[call site]
05068
calloc
[call site]
05069
__assert_fail
[call site]
05070
__assert_fail
[call site]
05071
bcf_hdr_get_hrec
[function]
[call site]
05072
add_missing_contig_hrec
[function]
[call site]
05073
calloc
[call site]
05074
strdup
[call site]
05075
bcf_hrec_add_key
[function]
[call site]
05076
strlen
[call site]
05077
bcf_hrec_set_val
[function]
[call site]
05078
bcf_hdr_add_hrec
[function]
[call site]
05079
__errno_location
[call site]
05080
__errno_location
[call site]
05081
strerror
[call site]
05082
hts_log
[function]
[call site]
05083
bcf_hrec_destroy
[function]
[call site]
05084
__errno_location
[call site]
05085
bcf_hdr_sync
[function]
[call site]
05086
tbx_destroy
[function]
[call site]
05087
tbx_destroy
[function]
[call site]
05088
bcf_hdr_destroy
[function]
[call site]
05089
get_hdr_aux
[function]
[call site]
05090
kh_destroy_hdict
[function]
[call site]
05091
kh_destroy_vdict
[function]
[call site]
05092
bcf_hrec_destroy
[function]
[call site]
05093
hts_log
[function]
[call site]
05094
__assert_fail
[call site]
05095
bcf_hdr_init
[function]
[call site]
05096
hts_log
[function]
[call site]
05097
bgzf_read
[function]
[call site]
05098
hts_log
[function]
[call site]
05099
bcf_hdr_destroy
[function]
[call site]
05100
strncmp
[call site]
05101
strncmp
[call site]
05102
hts_log
[function]
[call site]
05103
hts_log
[function]
[call site]
05104
bcf_hdr_destroy
[function]
[call site]
05105
bgzf_read
[function]
[call site]
05106
__errno_location
[call site]
05107
__errno_location
[call site]
05108
bgzf_read
[function]
[call site]
05109
bcf_hdr_parse
[function]
[call site]
05110
bcf_hdr_incr_ref
[function]
[call site]
05111
get_hdr_aux
[function]
[call site]
05112
bgzf_set_private_data
[function]
[call site]
05113
__assert_fail
[call site]
05114
hdr_bgzf_private_data_cleanup
[function]
[call site]
05115
bcf_hdr_decr_ref
[function]
[call site]
05116
get_hdr_aux
[function]
[call site]
05117
bcf_hdr_destroy
[function]
[call site]
05118
hts_log
[function]
[call site]
05119
bcf_hdr_destroy
[function]
[call site]
05120
hts_close_or_abort
[function]
[call site]
05121
hts_close
[function]
[call site]
05122
bcf_hdr_write
[function]
[call site]
05123
__errno_location
[call site]
05124
bcf_hdr_sync
[function]
[call site]
05125
vcf_hdr_write
[function]
[call site]
05126
bcf_hdr_format
[function]
[call site]
05127
_bcf_hrec_format
[function]
[call site]
05128
ksprintf
[function]
[call site]
05129
strcmp
[call site]
05130
kputc
[function]
[call site]
05131
ksprintf
[function]
[call site]
05132
ksprintf
[function]
[call site]
05133
ksprintf
[function]
[call site]
05134
ksprintf
[function]
[call site]
05135
ksprintf
[function]
[call site]
05136
ksprintf
[function]
[call site]
05137
ksprintf
[function]
[call site]
05138
bgzf_write
[function]
[call site]
05139
bgzf_flush
[function]
[call site]
05140
hwrite
[function]
[call site]
05141
bcf_hdr_format
[function]
[call site]
05142
kputc
[function]
[call site]
05143
bgzf_write
[function]
[call site]
05144
u32_to_le
[function]
[call site]
05145
bgzf_write
[function]
[call site]
05146
bgzf_write
[function]
[call site]
05147
bgzf_flush
[function]
[call site]
05148
bcf_hdr_incr_ref
[function]
[call site]
05149
bgzf_set_private_data
[function]
[call site]
05150
hdr_bgzf_private_data_cleanup
[function]
[call site]
05151
bcf_init
[function]
[call site]
05152
calloc
[call site]
05153
bcf_read
[function]
[call site]
05154
vcf_read
[function]
[call site]
05155
hts_getline
[function]
[call site]
05156
vcf_parse
[function]
[call site]
05157
ks_resize
[function]
[call site]
05158
bcf_clear
[function]
[call site]
05159
bcf_float_set
[function]
[call site]
05160
kstrtok
[function]
[call site]
05161
kh_get_vdict
[function]
[call site]
05162
hts_log
[function]
[call site]
05163
hts_log
[function]
[call site]
05164
fix_chromosome
[function]
[call site]
05165
ksprintf
[function]
[call site]
05166
bcf_hdr_parse_line
[function]
[call site]
05167
bcf_hdr_add_hrec
[function]
[call site]
05168
bcf_hrec_destroy
[function]
[call site]
05169
bcf_hdr_sync
[function]
[call site]
05170
kh_get_vdict
[function]
[call site]
05171
hts_log
[function]
[call site]
05172
kstrtok
[function]
[call site]
05173
hts_str2uint
[function]
[call site]
05174
hts_log
[function]
[call site]
05175
hts_log
[function]
[call site]
05176
kstrtok
[function]
[call site]
05177
memcmp
[call site]
05178
bcf_enc_vchar
[function]
[call site]
05179
bcf_enc_size
[function]
[call site]
05180
ks_resize
[function]
[call site]
05181
ks_resize
[function]
[call site]
05182
i16_to_le
[function]
[call site]
05183
i32_to_le
[function]
[call site]
05184
kputsn
[function]
[call site]
05185
bcf_enc_size
[function]
[call site]
05186
kstrtok
[function]
[call site]
05187
bcf_enc_vchar
[function]
[call site]
05188
kstrtok
[function]
[call site]
05189
memcmp
[call site]
05190
bcf_seqname_safe
[function]
[call site]
05191
bcf_seqname
[function]
[call site]
05192
bcf_hdr_id2name
[function]
[call site]
05193
hts_log
[function]
[call site]
05194
bcf_enc_vchar
[function]
[call site]
05195
kstrtok
[function]
[call site]
05196
memcmp
[call site]
05197
atof
[call site]
05198
bcf_float_set
[function]
[call site]
05199
kstrtok
[function]
[call site]
05200
memcmp
[call site]
05201
vcf_parse_filter
[function]
[call site]
05202
hts_malloc_p
[function]
[call site]
05203
bcf_seqname_safe
[function]
[call site]
05204
hts_log
[function]
[call site]
05205
kstrtok
[function]
[call site]
05206
kh_get_vdict
[function]
[call site]
05207
bcf_seqname_safe
[function]
[call site]
05208
hts_log
[function]
[call site]
05209
hts_log
[function]
[call site]
05210
ksprintf
[function]
[call site]
05211
bcf_hdr_parse_line
[function]
[call site]
05212
bcf_hdr_add_hrec
[function]
[call site]
05213
bcf_hrec_destroy
[function]
[call site]
05214
bcf_hdr_sync
[function]
[call site]
05215
kh_get_vdict
[function]
[call site]
05216
bcf_seqname_safe
[function]
[call site]
05217
hts_log
[function]
[call site]
05218
bcf_enc_vint
[function]
[call site]
05219
bcf_enc_size
[function]
[call site]
05220
bcf_enc_int1
[function]
[call site]
05221
ks_resize
[function]
[call site]
05222
i16_to_le
[function]
[call site]
05223
i32_to_le
[function]
[call site]
05224
bcf_enc_size
[function]
[call site]
05225
ks_resize
[function]
[call site]
05226
bcf_enc_size
[function]
[call site]
05227
ks_resize
[function]
[call site]
05228
i16_to_le
[function]
[call site]
05229
bcf_enc_size
[function]
[call site]
05230
ks_resize
[function]
[call site]
05231
i32_to_le
[function]
[call site]
05232
bcf_enc_vint
[function]
[call site]
05233
kstrtok
[function]
[call site]
05234
memcmp
[call site]
05235
vcf_parse_info
[function]
[call site]
05236
bcf_seqname_safe
[function]
[call site]
05237
hts_log
[function]
[call site]
05238
kh_get_vdict
[function]
[call site]
05239
bcf_seqname_safe
[function]
[call site]
05240
hts_log
[function]
[call site]
05241
hts_log
[function]
[call site]
05242
ksprintf
[function]
[call site]
05243
bcf_hdr_parse_line
[function]
[call site]
05244
bcf_hdr_add_hrec
[function]
[call site]
05245
bcf_hrec_destroy
[function]
[call site]
05246
bcf_hdr_sync
[function]
[call site]
05247
kh_get_vdict
[function]
[call site]
05248
bcf_seqname_safe
[function]
[call site]
05249
hts_log
[function]
[call site]
05250
bcf_enc_int1
[function]
[call site]
05251
bcf_enc_size
[function]
[call site]
05252
bcf_enc_vchar
[function]
[call site]
05253
hts_realloc_p
[function]
[call site]
05254
bcf_seqname_safe
[function]
[call site]
05255
hts_log
[function]
[call site]
05256
hts_str2int
[function]
[call site]
05257
bcf_seqname_safe
[function]
[call site]
05258
hts_log
[function]
[call site]
05259
bcf_enc_int1
[function]
[call site]
05260
bcf_enc_vint
[function]
[call site]
05261
memcmp
[call site]
05262
bcf_seqname_safe
[function]
[call site]
05263
hts_log
[function]
[call site]
05264
hts_str2dbl
[function]
[call site]
05265
bcf_float_set
[function]
[call site]
05266
bcf_enc_vfloat
[function]
[call site]
05267
__assert_fail
[call site]
05268
bcf_enc_size
[function]
[call site]
05269
serialize_float_array
[function]
[call site]
05270
ks_resize
[function]
[call site]
05271
float_to_le
[function]
[call site]
05272
kstrtok
[function]
[call site]
05273
vcf_parse_format
[function]
[call site]
05274
vcf_parse_format_empty1
[function]
[call site]
05275
bcf_seqname_safe
[function]
[call site]
05276
hts_log
[function]
[call site]
05277
vcf_parse_format_dict2
[function]
[call site]
05278
kstrtok
[function]
[call site]
05279
bcf_seqname_safe
[function]
[call site]
05280
hts_log
[function]
[call site]
05281
kh_get_vdict
[function]
[call site]
05282
bcf_seqname_safe
[function]
[call site]
05283
hts_log
[function]
[call site]
05284
bcf_seqname_safe
[function]
[call site]
05285
hts_log
[function]
[call site]
05286
hts_log
[function]
[call site]
05287
ksprintf
[function]
[call site]
05288
bcf_hdr_parse_line
[function]
[call site]
05289
bcf_hdr_add_hrec
[function]
[call site]
05290
bcf_hrec_destroy
[function]
[call site]
05291
bcf_hdr_sync
[function]
[call site]
05292
kh_get_vdict
[function]
[call site]
05293
bcf_seqname_safe
[function]
[call site]
05294
hts_log
[function]
[call site]
05295
vcf_parse_format_max3
[function]
[call site]
05296
hts_log
[function]
[call site]
05297
vcf_parse_format_alloc4
[function]
[call site]
05298
bcf_seqname_safe
[function]
[call site]
05299
hts_log
[function]
[call site]
05300
align_mem
[function]
[call site]
05301
kputsn
[function]
[call site]
05302
bcf_seqname_safe
[function]
[call site]
05303
hts_log
[function]
[call site]
05304
bcf_seqname_safe
[function]
[call site]
05305
hts_log
[function]
[call site]
05306
ks_resize
[function]
[call site]
05307
bcf_seqname_safe
[function]
[call site]
05308
hts_log
[function]
[call site]
05309
bcf_seqname_safe
[function]
[call site]
05310
hts_log
[function]
[call site]
05311
vcf_parse_format_fill5
[function]
[call site]
05312
bcf_get_version
[function]
[call site]
05313
bcf_seqname_safe
[function]
[call site]
05314
hts_log
[function]
[call site]
05315
hts_str2uint
[function]
[call site]
05316
bcf_seqname_safe
[function]
[call site]
05317
hts_log
[function]
[call site]
05318
bcf_seqname_safe
[function]
[call site]
05319
hts_log
[function]
[call site]
05320
hts_str2int
[function]
[call site]
05321
bcf_seqname_safe
[function]
[call site]
05322
hts_log
[function]
[call site]
05323
isdigit_c
[function]
[call site]
05324
bcf_float_set
[function]
[call site]
05325
hts_str2dbl
[function]
[call site]
05326
bcf_seqname
[function]
[call site]
05327
hts_log
[function]
[call site]
05328
bcf_float_set
[function]
[call site]
05329
bcf_float_set
[function]
[call site]
05330
bcf_seqname_safe
[function]
[call site]
05331
hts_log
[function]
[call site]
05332
hts_strprint
[function]
[call site]
05333
bcf_seqname_safe
[function]
[call site]
05334
hts_log
[function]
[call site]
05335
bcf_float_set
[function]
[call site]
05336
bcf_float_set
[function]
[call site]
05337
vcf_parse_format_gt6
[function]
[call site]
05338
bcf_enc_int1
[function]
[call site]
05339
bcf_enc_size
[function]
[call site]
05340
kputsn
[function]
[call site]
05341
bcf_enc_vint
[function]
[call site]
05342
bcf_enc_size
[function]
[call site]
05343
serialize_float_array
[function]
[call site]
05344
bcf_seqname_safe
[function]
[call site]
05345
hts_log
[function]
[call site]
05346
vcf_parse_format_check7
[function]
[call site]
05347
bcf_seqname_safe
[function]
[call site]
05348
hts_log
[function]
[call site]
05349
bcf_seqname_safe
[function]
[call site]
05350
hts_log
[function]
[call site]
05351
get_rlen
[function]
[call site]
05352
bcf_hdr_id2int
[function]
[call site]
05353
svlen_on_ref_for_vcf_alt
[function]
[call site]
05354
strlen
[call site]
05355
memcmp
[call site]
05356
memcmp
[call site]
05357
memcmp
[call site]
05358
memcmp
[call site]
05359
strcmp
[call site]
05360
strcmp
[call site]
05361
strlen
[call site]
05362
bcf_dec_size
[function]
[call site]
05363
bcf_dec_typed_int1
[function]
[call site]
05364
bcf_dec_int1
[function]
[call site]
05365
le_to_i8
[function]
[call site]
05366
le_to_i16
[function]
[call site]
05367
le_to_i32
[function]
[call site]
05368
le_to_i64
[function]
[call site]
05369
le_to_u64
[function]
[call site]
05370
bcf_dec_size
[function]
[call site]
05371
svlen_on_ref_for_vcf_alt
[function]
[call site]
05372
strncmp
[call site]
05373
strncmp
[call site]
05374
bcf_dec_size
[function]
[call site]
05375
bcf_hdr_id2int
[function]
[call site]
05376
bcf_get_info
[function]
[call site]
05377
bcf_hdr_id2int
[function]
[call site]
05378
bcf_get_info_id
[function]
[call site]
05379
bcf_unpack
[function]
[call site]
05380
bcf_fmt_sized_array
[function]
[call site]
05381
bcf_dec_size
[function]
[call site]
05382
bcf_fmt_array
[function]
[call site]
05383
kputc_
[function]
[call site]
05384
memchr
[call site]
05385
kputsn
[function]
[call site]
05386
kputc
[function]
[call site]
05387
le_to_i8
[function]
[call site]
05388
kputc_
[function]
[call site]
05389
kputc
[function]
[call site]
05390
kputw
[function]
[call site]
05391
le_to_i16
[function]
[call site]
05392
kputc_
[function]
[call site]
05393
kputc
[function]
[call site]
05394
kputw
[function]
[call site]
05395
le_to_i32
[function]
[call site]
05396
kputc_
[function]
[call site]
05397
kputc
[function]
[call site]
05398
kputw
[function]
[call site]
05399
le_to_u32
[function]
[call site]
05400
kputc_
[function]
[call site]
05401
kputc
[function]
[call site]
05402
le_to_float
[function]
[call site]
05403
kputd
[function]
[call site]
05404
hts_log
[function]
[call site]
05405
exit
[call site]
05406
kputc_
[function]
[call site]
05407
hts_realloc_or_die
[function]
[call site]
05408
bcf_fmt_sized_array
[function]
[call site]
05409
kputc_
[function]
[call site]
05410
bcf_dec_size
[function]
[call site]
05411
hts_realloc_or_die
[function]
[call site]
05412
bcf_dec_int1
[function]
[call site]
05413
hts_realloc_or_die
[function]
[call site]
05414
bcf_unpack_info_core1
[function]
[call site]
05415
bcf_dec_typed_int1
[function]
[call site]
05416
bcf_dec_size
[function]
[call site]
05417
le_to_i16
[function]
[call site]
05418
le_to_i32
[function]
[call site]
05419
le_to_float
[function]
[call site]
05420
le_to_i64
[function]
[call site]
05421
hts_realloc_or_die
[function]
[call site]
05422
bcf_unpack_fmt_core1
[function]
[call site]
05423
bcf_dec_typed_int1
[function]
[call site]
05424
bcf_dec_size
[function]
[call site]
05425
bcf_get_info
[function]
[call site]
05426
bcf_dec_typed_int1
[function]
[call site]
05427
bcf_unpack_info_core1
[function]
[call site]
05428
bcf_unpack_info_core1
[function]
[call site]
05429
bcf_dec_size
[function]
[call site]
05430
bcf_hdr_id2int
[function]
[call site]
05431
bcf_get_fmt
[function]
[call site]
05432
bcf_hdr_id2int
[function]
[call site]
05433
bcf_get_fmt_id
[function]
[call site]
05434
bcf_unpack
[function]
[call site]
05435
bcf_dec_typed_int1
[function]
[call site]
05436
bcf_unpack_fmt_core1
[function]
[call site]
05437
bcf_dec_size
[function]
[call site]
05438
le_to_i8
[function]
[call site]
05439
le_to_i16
[function]
[call site]
05440
le_to_i32
[function]
[call site]
05441
le_to_i64
[function]
[call site]
05442
le_to_i8
[function]
[call site]
05443
le_to_i16
[function]
[call site]
05444
le_to_i32
[function]
[call site]
05445
le_to_i64
[function]
[call site]
05446
bgzf_get_private_data
[function]
[call site]
05447
__assert_fail
[call site]
05448
bcf_read1_core
[function]
[call site]
05449
bgzf_read
[function]
[call site]
05450
bcf_clear
[function]
[call site]
05451
le_to_u32
[function]
[call site]
05452
le_to_u32
[function]
[call site]
05453
ks_resize
[function]
[call site]
05454
ks_resize
[function]
[call site]
05455
le_to_i32
[function]
[call site]
05456
le_to_u32
[function]
[call site]
05457
le_to_i32
[function]
[call site]
05458
le_to_float
[function]
[call site]
05459
le_to_u16
[function]
[call site]
05460
le_to_u16
[function]
[call site]
05461
le_to_u32
[function]
[call site]
05462
bgzf_read
[function]
[call site]
05463
bgzf_read
[function]
[call site]
05464
bcf_record_check
[function]
[call site]
05465
bcf_get_version
[function]
[call site]
05466
bcf_hdr_id2int
[function]
[call site]
05467
hts_log
[function]
[call site]
05468
bcf_dec_size_safe
[function]
[call site]
05469
bcf_dec_typed_int1_safe
[function]
[call site]
05470
le_to_i16
[function]
[call site]
05471
le_to_i32
[function]
[call site]
05472
bcf_seqname_safe
[function]
[call site]
05473
get_type_name
[function]
[call site]
05474
hts_log
[function]
[call site]
05475
bcf_seqname_safe
[function]
[call site]
05476
hts_log
[function]
[call site]
05477
bcf_dec_size_safe
[function]
[call site]
05478
bcf_seqname_safe
[function]
[call site]
05479
get_type_name
[function]
[call site]
05480
hts_log
[function]
[call site]
05481
bcf_dec_size_safe
[function]
[call site]
05482
bcf_seqname_safe
[function]
[call site]
05483
get_type_name
[function]
[call site]
05484
bcf_dec_int1
[function]
[call site]
05485
bcf_seqname_safe
[function]
[call site]
05486
hts_log
[function]
[call site]
05487
bcf_dec_typed_int1_safe
[function]
[call site]
05488
bcf_seqname_safe
[function]
[call site]
05489
hts_log
[function]
[call site]
05490
bcf_dec_size_safe
[function]
[call site]
05491
bcf_seqname_safe
[function]
[call site]
05492
get_type_name
[function]
[call site]
05493
hts_log
[function]
[call site]
05494
bcf_dec_typed_int1_safe
[function]
[call site]
05495
bcf_record_check_err
[function]
[call site]
05496
bcf_seqname_safe
[function]
[call site]
05497
hts_log
[function]
[call site]
05498
bcf_dec_size_safe
[function]
[call site]
05499
bcf_record_check_err
[function]
[call site]
05500
updatephasing
[function]
[call site]
05501
bcf_seqname_safe
[function]
[call site]
05502
hts_log
[function]
[call site]
05503
get_rlen
[function]
[call site]
05504
bcf_seqname_safe
[function]
[call site]
05505
hts_log
[function]
[call site]
05506
bcf_seqname_safe
[function]
[call site]
05507
hts_log
[function]
[call site]
05508
bcf_seqname_safe
[function]
[call site]
05509
hts_log
[function]
[call site]
05510
bcf_subset_format
[function]
[call site]
05511
hts_realloc_or_die
[function]
[call site]
05512
bcf_unpack_fmt_core1
[function]
[call site]
05513
bcf_write
[function]
[call site]
05514
bcf_hdr_sync
[function]
[call site]
05515
bcf_seqname_safe
[function]
[call site]
05516
hts_log
[function]
[call site]
05517
vcf_write
[function]
[call site]
05518
vcf_format
[function]
[call site]
05519
bcf_seqname
[function]
[call site]
05520
hts_log
[function]
[call site]
05521
__errno_location
[call site]
05522
bcf_unpack
[function]
[call site]
05523
get_hdr_aux
[function]
[call site]
05524
kputs
[function]
[call site]
05525
kputc_
[function]
[call site]
05526
kputll
[function]
[call site]
05527
kputc_
[function]
[call site]
05528
kputs
[function]
[call site]
05529
kputc_
[function]
[call site]
05530
kputs
[function]
[call site]
05531
kputc_
[function]
[call site]
05532
kputc_
[function]
[call site]
05533
kputc_
[function]
[call site]
05534
kputs
[function]
[call site]
05535
kputc_
[function]
[call site]
05536
kputc_
[function]
[call site]
05537
bcf_float_is_missing
[function]
[call site]
05538
kputc_
[function]
[call site]
05539
kputd
[function]
[call site]
05540
kputc_
[function]
[call site]
05541
bcf_seqname_safe
[function]
[call site]
05542
hts_log
[function]
[call site]
05543
__errno_location
[call site]
05544
kputc_
[function]
[call site]
05545
strlen
[call site]
05546
kputsn
[function]
[call site]
05547
kputc_
[function]
[call site]
05548
kputc_
[function]
[call site]
05549
bcf_dec_typed_int1
[function]
[call site]
05550
bcf_dec_size
[function]
[call site]
05551
bcf_seqname_safe
[function]
[call site]
05552
hts_log
[function]
[call site]
05553
__errno_location
[call site]
05554
strlen
[call site]
05555
ks_resize
[function]
[call site]
05556
bcf_fmt_array
[function]
[call site]
05557
bcf_float_is_missing
[function]
[call site]
05558
kputc_
[function]
[call site]
05559
kputd
[function]
[call site]
05560
kputc_
[function]
[call site]
05561
kputc_
[function]
[call site]
05562
kputw
[function]
[call site]
05563
kputc_
[function]
[call site]
05564
kputll
[function]
[call site]
05565
bcf_seqname_safe
[function]
[call site]
05566
hts_log
[function]
[call site]
05567
__errno_location
[call site]
05568
kputc_
[function]
[call site]
05569
kputc_
[function]
[call site]
05570
hts_malloc_p
[function]
[call site]
05571
bcf_dec_typed_int1
[function]
[call site]
05572
bcf_dec_size
[function]
[call site]
05573
kputc_
[function]
[call site]
05574
bcf_seqname_safe
[function]
[call site]
05575
hts_log
[function]
[call site]
05576
__errno_location
[call site]
05577
strlen
[call site]
05578
kputsn
[function]
[call site]
05579
kputsn
[function]
[call site]
05580
kputc_
[function]
[call site]
05581
kputc_
[function]
[call site]
05582
bcf_format_gt_v2
[function]
[call site]
05583
le_to_i8
[function]
[call site]
05584
kputc
[function]
[call site]
05585
kputw
[function]
[call site]
05586
le_to_i16
[function]
[call site]
05587
kputc
[function]
[call site]
05588
kputw
[function]
[call site]
05589
le_to_i32
[function]
[call site]
05590
kputc
[function]
[call site]
05591
kputw
[function]
[call site]
05592
kputc
[function]
[call site]
05593
hts_log
[function]
[call site]
05594
get_hdr_aux
[function]
[call site]
05595
kinsert_char
[function]
[call site]
05596
ks_resize
[function]
[call site]
05597
kinsert_char
[function]
[call site]
05598
kinsert_char
[function]
[call site]
05599
hts_log
[function]
[call site]
05600
__errno_location
[call site]
05601
bcf_fmt_array1
[function]
[call site]
05602
kputc_
[function]
[call site]
05603
kputc_
[function]
[call site]
05604
kputw
[function]
[call site]
05605
le_to_i16
[function]
[call site]
05606
kputc_
[function]
[call site]
05607
kputw
[function]
[call site]
05608
le_to_i32
[function]
[call site]
05609
kputc_
[function]
[call site]
05610
kputw
[function]
[call site]
05611
le_to_u32
[function]
[call site]
05612
kputc_
[function]
[call site]
05613
le_to_float
[function]
[call site]
05614
kputd
[function]
[call site]
05615
bcf_fmt_array
[function]
[call site]
05616
kputc_
[function]
[call site]
05617
bcf_fmt_array1
[function]
[call site]
05618
bcf_fmt_array
[function]
[call site]
05619
kputc_
[function]
[call site]
05620
kputsn
[function]
[call site]
05621
kputc
[function]
[call site]
05622
bgzf_flush_try
[function]
[call site]
05623
hts_idx_amend_last
[function]
[call site]
05624
bgzf_write
[function]
[call site]
05625
hwrite
[function]
[call site]
05626
bcf_seqname_safe
[function]
[call site]
05627
hts_idx_tbi_name
[function]
[call site]
05628
strlen
[call site]
05629
hts_realloc_ps
[function]
[call site]
05630
strcpy
[call site]
05631
le_to_u32
[function]
[call site]
05632
u32_to_le
[function]
[call site]
05633
bgzf_idx_push
[function]
[call site]
05634
bcf_strerror
[function]
[call site]
05635
add_desc_to_buffer
[function]
[call site]
05636
add_desc_to_buffer
[function]
[call site]
05640
bcf_seqname_safe
[function]
[call site]
05641
bcf1_sync
[function]
[call site]
05642
bcf1_sync_id
[function]
[call site]
05643
strcmp
[call site]
05644
strlen
[call site]
05645
bcf_enc_vchar
[function]
[call site]
05646
bcf_enc_size
[function]
[call site]
05647
bcf1_sync_alleles
[function]
[call site]
05648
strlen
[call site]
05649
bcf_enc_vchar
[function]
[call site]
05650
bcf1_sync_filter
[function]
[call site]
05651
bcf_enc_vint
[function]
[call site]
05652
bcf_enc_vint
[function]
[call site]
05653
bcf1_sync_info
[function]
[call site]
05654
kputsn_
[function]
[call site]
05655
bcf_unpack
[function]
[call site]
05656
bcf1_sync_id
[function]
[call site]
05657
kputsn_
[function]
[call site]
05658
bcf1_sync_alleles
[function]
[call site]
05659
kputsn_
[function]
[call site]
05660
strlen
[call site]
05661
bcf1_sync_filter
[function]
[call site]
05662
kputsn_
[function]
[call site]
05663
bcf_enc_vint
[function]
[call site]
05664
bcf1_sync_info
[function]
[call site]
05665
kputsn_
[function]
[call site]
05666
kputsn_
[function]
[call site]
05667
bcf_seqname_safe
[function]
[call site]
05668
hts_log
[function]
[call site]
05669
u32_to_le
[function]
[call site]
05670
u32_to_le
[function]
[call site]
05671
i32_to_le
[function]
[call site]
05672
u32_to_le
[function]
[call site]
05673
u32_to_le
[function]
[call site]
05674
float_to_le
[function]
[call site]
05675
u16_to_le
[function]
[call site]
05676
u16_to_le
[function]
[call site]
05677
u32_to_le
[function]
[call site]
05678
bgzf_write
[function]
[call site]
05679
bgzf_write
[function]
[call site]
05680
bgzf_write
[function]
[call site]
05681
bgzf_idx_push
[function]
[call site]
05682
bcf_destroy
[function]
[call site]
05683
bcf_empty
[function]
[call site]
05684
bcf_clear
[function]
[call site]
05685
bcf_hdr_destroy
[function]
[call site]
05686
hts_close_or_abort
[function]
[call site]
05687
hts_close
[function]
[call site]
05688
view_vcf
[function]
[call site]
05689