The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 5717 | 0 | EP | call site: 00000 | view_sam |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
__errno_location
[call site]
00024
realloc
[call site]
00025
__ac_FNV1a_hash_string
[function]
[call site]
00026
strcmp
[call site]
00027
__errno_location
[call site]
00028
strerror
[call site]
00029
hts_log
[function]
[call site]
00030
priority
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
hfile_add_scheme_handler
[function]
[call site]
00033
init_add_plugin
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hts_log
[function]
[call site]
00037
hfile_plugin_init_mem
[function]
[call site]
00038
hfile_add_scheme_handler
[function]
[call site]
00039
init_add_plugin
[function]
[call site]
00040
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00041
hfile_add_scheme_handler
[function]
[call site]
00042
init_add_plugin
[function]
[call site]
00043
hfile_plugin_init_libcurl
[function]
[call site]
00044
hts_version
[function]
[call site]
00045
curl_global_init
[call site]
00046
__errno_location
[call site]
00047
curl_share_init
[call site]
00048
curl_global_cleanup
[call site]
00049
__errno_location
[call site]
00050
curl_share_setopt
[call site]
00051
share_lock
[function]
[call site]
00052
pthread_mutex_lock
[call site]
00053
curl_share_setopt
[call site]
00054
share_unlock
[function]
[call site]
00055
pthread_mutex_unlock
[call site]
00056
curl_share_setopt
[call site]
00057
curl_share_cleanup
[call site]
00058
curl_global_cleanup
[call site]
00059
__errno_location
[call site]
00060
getenv
[call site]
00061
strdup
[call site]
00062
kh_init_auth_map
[function]
[call site]
00063
calloc
[call site]
00064
__errno_location
[call site]
00065
kh_destroy_auth_map
[function]
[call site]
00066
curl_share_cleanup
[call site]
00067
curl_global_cleanup
[call site]
00068
__errno_location
[call site]
00069
getenv
[call site]
00070
strcmp
[call site]
00071
getenv
[call site]
00072
atoi
[call site]
00073
getenv
[call site]
00074
atol
[call site]
00075
getenv
[call site]
00076
atol
[call site]
00077
getenv
[call site]
00078
atol
[call site]
00079
getenv
[call site]
00080
atol
[call site]
00081
curl_version_info
[call site]
00082
ksprintf
[function]
[call site]
00083
kvsprintf
[function]
[call site]
00084
kputd
[function]
[call site]
00085
kputsn
[function]
[call site]
00086
__errno_location
[call site]
00087
ks_resize
[function]
[call site]
00088
realloc
[call site]
00089
kputsn
[function]
[call site]
00090
kputc
[function]
[call site]
00091
ks_resize
[function]
[call site]
00092
ks_resize
[function]
[call site]
00093
snprintf
[call site]
00094
kputsn
[function]
[call site]
00095
vsnprintf
[call site]
00096
ks_resize
[function]
[call site]
00097
vsnprintf
[call site]
00098
hfile_add_scheme_handler
[function]
[call site]
00099
init_add_plugin
[function]
[call site]
00100
hfile_plugin_init_gcs
[function]
[call site]
00101
hfile_add_scheme_handler
[function]
[call site]
00102
hfile_add_scheme_handler
[function]
[call site]
00103
hfile_add_scheme_handler
[function]
[call site]
00104
init_add_plugin
[function]
[call site]
00105
hfile_plugin_init_s3
[function]
[call site]
00106
hts_version
[function]
[call site]
00107
curl_global_init
[call site]
00108
__errno_location
[call site]
00109
curl_share_init
[call site]
00110
curl_global_cleanup
[call site]
00111
__errno_location
[call site]
00112
curl_share_setopt
[call site]
00113
share_lock
[function]
[call site]
00114
pthread_mutex_lock
[call site]
00115
curl_share_setopt
[call site]
00116
share_unlock
[function]
[call site]
00117
pthread_mutex_unlock
[call site]
00118
curl_share_setopt
[call site]
00119
curl_share_cleanup
[call site]
00120
curl_global_cleanup
[call site]
00121
__errno_location
[call site]
00122
curl_version_info
[call site]
00123
ksprintf
[function]
[call site]
00124
hfile_add_scheme_handler
[function]
[call site]
00125
hfile_add_scheme_handler
[function]
[call site]
00126
hfile_add_scheme_handler
[function]
[call site]
00127
atexit
[call site]
00128
hfile_exit
[function]
[call site]
00129
hfile_shutdown
[function]
[call site]
00130
pthread_mutex_lock
[call site]
00131
kh_destroy_scheme_string
[function]
[call site]
00132
pthread_mutex_unlock
[call site]
00133
pthread_mutex_destroy
[call site]
00134
pthread_mutex_unlock
[call site]
00135
pthread_mutex_unlock
[call site]
00136
kh_get_scheme_string
[function]
[call site]
00137
strchr
[call site]
00138
strcmp
[call site]
00139
hopen_fd_stdinout
[function]
[call site]
00140
strchr
[call site]
00141
snprintf
[call site]
00142
hdopen
[function]
[call site]
00143
blksize
[function]
[call site]
00144
fstat
[call site]
00145
hfile_init
[function]
[call site]
00146
strchr
[call site]
00147
posix_memalign
[call site]
00148
strchr
[call site]
00149
hfile_destroy
[function]
[call site]
00150
__errno_location
[call site]
00151
__errno_location
[call site]
00152
strchr
[call site]
00153
strchr
[call site]
00154
hopen_fd
[function]
[call site]
00155
hfile_oflags
[function]
[call site]
00156
open
[call site]
00157
blksize
[function]
[call site]
00158
hfile_init
[function]
[call site]
00159
__errno_location
[call site]
00160
close
[call site]
00161
hfile_destroy
[function]
[call site]
00162
hts_hopen
[function]
[call site]
00163
calloc
[call site]
00164
strdup
[call site]
00165
ed_is_big
[function]
[call site]
00166
strchr
[call site]
00167
strncpy
[call site]
00168
strncpy
[call site]
00169
strchr
[call site]
00170
hts_detect_format2
[function]
[call site]
00171
hpeek
[function]
[call site]
00172
refill_buffer
[function]
[call site]
00173
__errno_location
[call site]
00174
memcmp
[call site]
00175
memcmp
[call site]
00176
decompress_peek_gz
[function]
[call site]
00177
hpeek
[function]
[call site]
00178
inflateInit2_
[call site]
00179
inflate
[call site]
00180
inflateReset
[call site]
00181
inflateEnd
[call site]
00182
memcmp
[call site]
00183
memcmp
[call site]
00184
memcmp
[call site]
00185
memcmp
[call site]
00186
decompress_peek_xz
[function]
[call site]
00187
hpeek
[function]
[call site]
00188
lzma_easy_decoder_memusage
[call site]
00189
lzma_stream_decoder
[call site]
00190
lzma_code
[call site]
00191
lzma_end
[call site]
00192
lzma_end
[call site]
00193
memcmp
[call site]
00194
hpeek
[function]
[call site]
00195
strcmp
[call site]
00196
find_file_extension
[function]
[call site]
00197
strstr
[call site]
00198
strlen
[call site]
00199
tolower_c
[function]
[call site]
00200
memcmp
[call site]
00201
memcmp
[call site]
00202
memcmp
[call site]
00203
memcmp
[call site]
00204
memcmp
[call site]
00205
memcmp
[call site]
00206
memcmp
[call site]
00207
strcmp
[call site]
00208
memcmp
[call site]
00209
parse_version
[function]
[call site]
00210
isdigit_c
[function]
[call site]
00211
__ctype_b_loc
[call site]
00212
isdigit_c
[function]
[call site]
00213
memcmp
[call site]
00214
memcmp
[call site]
00215
memcmp
[call site]
00216
memcmp
[call site]
00217
parse_version
[function]
[call site]
00218
memcmp
[call site]
00219
cmp_nonblank
[function]
[call site]
00220
isspace_c
[function]
[call site]
00221
__ctype_b_loc
[call site]
00222
memcmp
[call site]
00223
is_fastaq
[function]
[call site]
00224
is_fastaq
[function]
[call site]
00228
parse_tabbed_text
[function]
[call site]
00229
isdigit_c
[function]
[call site]
00230
strchr
[call site]
00231
isdigit_c
[function]
[call site]
00232
colmatch
[function]
[call site]
00233
colmatch
[function]
[call site]
00234
strstr
[call site]
00235
colmatch
[function]
[call site]
00236
strstr
[call site]
00237
colmatch
[function]
[call site]
00238
colmatch
[function]
[call site]
00239
is_text_only
[function]
[call site]
00240
__errno_location
[call site]
00241
hopen_htsget_redirect
[function]
[call site]
00242
hfile_init
[function]
[call site]
00243
parse_ga4gh_redirect_json
[function]
[call site]
00244
hts_json_fnext
[function]
[call site]
00245
hgetc
[function]
[call site]
00246
hgetc2
[function]
[call site]
00247
refill_buffer
[function]
[call site]
00248
fscan_string
[function]
[call site]
00249
hgetc
[function]
[call site]
00250
hgetc
[function]
[call site]
00251
kputc
[function]
[call site]
00252
kputc
[function]
[call site]
00253
kputc
[function]
[call site]
00254
kputc
[function]
[call site]
00255
kputc
[function]
[call site]
00256
kputc
[function]
[call site]
00257
hgetc
[function]
[call site]
00258
dehex
[function]
[call site]
00259
hgetc
[function]
[call site]
00260
dehex
[function]
[call site]
00261
hgetc
[function]
[call site]
00262
dehex
[function]
[call site]
00263
hgetc
[function]
[call site]
00264
dehex
[function]
[call site]
00265
encode_utf8
[function]
[call site]
00266
kputsn
[function]
[call site]
00267
kputc
[function]
[call site]
00268
kputsn
[function]
[call site]
00269
kputc
[function]
[call site]
00270
hpeek
[function]
[call site]
00271
strchr
[call site]
00272
hgetc
[function]
[call site]
00273
kputc
[function]
[call site]
00274
token_type
[function]
[call site]
00275
hts_json_fnext
[function]
[call site]
00279
strcmp
[call site]
00280
parse_ga4gh_body_json
[function]
[call site]
00281
hts_json_fnext
[function]
[call site]
00282
hts_json_fnext
[function]
[call site]
00283
strcmp
[call site]
00284
hts_json_fnext
[function]
[call site]
00285
hts_json_fnext
[function]
[call site]
00286
hts_realloc_or_die
[function]
[call site]
00287
__errno_location
[call site]
00288
realloc
[call site]
00289
__errno_location
[call site]
00290
strerror
[call site]
00291
hts_log
[function]
[call site]
00292
exit
[call site]
00293
hts_json_fnext
[function]
[call site]
00294
strcmp
[call site]
00295
hts_json_fnext
[function]
[call site]
00296
ks_release
[function]
[call site]
00297
strcmp
[call site]
00298
hts_json_fnext
[function]
[call site]
00299
hts_json_fnext
[function]
[call site]
00300
hts_json_fnext
[function]
[call site]
00301
kputs
[function]
[call site]
00302
__errno_location
[call site]
00303
strlen
[call site]
00304
kputsn
[function]
[call site]
00305
kputs
[function]
[call site]
00306
hts_realloc_or_die
[function]
[call site]
00307
ks_release
[function]
[call site]
00308
hts_json_fskip_value
[function]
[call site]
00309
skip_value
[function]
[call site]
00310
fnext
[function]
[call site]
00311
hts_json_fnext
[function]
[call site]
00312
strcmp
[call site]
00313
hts_json_fnext
[function]
[call site]
00314
hts_log
[function]
[call site]
00315
hts_json_fskip_value
[function]
[call site]
00316
hts_json_fnext
[function]
[call site]
00317
free_all_parts
[function]
[call site]
00318
free_part
[function]
[call site]
00319
hfile_destroy
[function]
[call site]
00320
__errno_location
[call site]
00321
hclose_abruptly
[function]
[call site]
00322
__errno_location
[call site]
00323
hfile_destroy
[function]
[call site]
00324
__errno_location
[call site]
00325
hts_crypt4gh_redirect
[function]
[call site]
00326
strlen
[call site]
00327
snprintf
[call site]
00328
strchr
[call site]
00329
snprintf
[call site]
00330
hopen
[function]
[call site]
00331
hts_detect_format2
[function]
[call site]
00332
strchr
[call site]
00333
strchr
[call site]
00334
strchr
[call site]
00335
strchr
[call site]
00336
strchr
[call site]
00337
strchr
[call site]
00338
strchr
[call site]
00339
strchr
[call site]
00340
abort
[call site]
00341
format_category
[function]
[call site]
00342
__errno_location
[call site]
00343
bgzf_hopen
[function]
[call site]
00344
strchr
[call site]
00345
bgzf_read_init
[function]
[call site]
00346
hpeek
[function]
[call site]
00347
calloc
[call site]
00348
hts_malloc_p
[function]
[call site]
00349
hts_prod_sat2
[function]
[call site]
00350
hts_malloc
[function]
[call site]
00351
__errno_location
[call site]
00352
memcmp
[call site]
00353
memcmp
[call site]
00354
hts_log
[function]
[call site]
00355
razf_info
[function]
[call site]
00356
strcmp
[call site]
00357
hseek
[function]
[call site]
00358
writebuffer_is_nonempty
[function]
[call site]
00359
flush_buffer
[function]
[call site]
00360
__errno_location
[call site]
00361
htell
[function]
[call site]
00362
__errno_location
[call site]
00363
__errno_location
[call site]
00364
__errno_location
[call site]
00365
hread
[function]
[call site]
00366
hread2
[function]
[call site]
00367
__errno_location
[call site]
00368
refill_buffer
[function]
[call site]
00369
ed_is_big
[function]
[call site]
00370
ed_swap_8p
[function]
[call site]
00371
ed_swap_8
[function]
[call site]
00372
hts_log
[function]
[call site]
00373
hts_log
[function]
[call site]
00374
__errno_location
[call site]
00375
kh_init_bgzf_cache
[function]
[call site]
00376
calloc
[call site]
00377
strchr
[call site]
00378
bgzf_write_init
[function]
[call site]
00379
calloc
[call site]
00380
mode2level
[function]
[call site]
00381
strchr
[call site]
00382
hts_malloc_p
[function]
[call site]
00383
strchr
[call site]
00384
calloc
[call site]
00385
deflateInit2_
[call site]
00386
bgzf_zerr
[function]
[call site]
00387
hts_log
[function]
[call site]
00391
__errno_location
[call site]
00392
strerror
[call site]
00393
hts_log
[function]
[call site]
00394
__errno_location
[call site]
00395
ed_is_big
[function]
[call site]
00396
cram_dopen
[function]
[call site]
00397
calloc
[call site]
00398
cram_read_file_def
[function]
[call site]
00399
hread
[function]
[call site]
00400
memcmp
[call site]
00401
hts_log
[function]
[call site]
00402
cram_init_tables
[function]
[call site]
00403
cram_init_varint
[function]
[call site]
00404
cram_read_SAM_hdr
[function]
[call site]
00405
int32_decode
[function]
[call site]
00406
hread
[function]
[call site]
00407
hread
[function]
[call site]
00408
cram_read_container
[function]
[call site]
00409
int32_decode
[function]
[call site]
00410
crc32
[call site]
00411
calloc
[call site]
00412
__errno_location
[call site]
00413
cram_free_container
[function]
[call site]
00414
cram_free_compression_header
[function]
[call site]
00415
kh_destroy_map
[function]
[call site]
00416
cram_free_block
[function]
[call site]
00417
kh_destroy_m_s2i
[function]
[call site]
00418
string_pool_destroy
[function]
[call site]
00419
cram_free_block
[function]
[call site]
00420
cram_free_slice
[function]
[call site]
00421
free_bam_list
[function]
[call site]
00422
bam_destroy1
[function]
[call site]
00423
bam_get_mempolicy
[function]
[call site]
00424
bam_get_mempolicy
[function]
[call site]
00425
bam_get_mempolicy
[function]
[call site]
00426
cram_free_block
[function]
[call site]
00427
cram_free_block
[function]
[call site]
00428
cram_free_block
[function]
[call site]
00429
cram_free_slice_header
[function]
[call site]
00430
cram_free_block
[function]
[call site]
00431
cram_free_block
[function]
[call site]
00432
cram_free_block
[function]
[call site]
00433
cram_free_block
[function]
[call site]
00434
cram_free_block
[function]
[call site]
00435
cram_free_block
[function]
[call site]
00436
string_pool_destroy
[function]
[call site]
00437
kh_destroy_m_s2i
[function]
[call site]
00438
kh_destroy_m_s2i
[function]
[call site]
00439
cram_free_slice
[function]
[call site]
00440
cram_stats_free
[function]
[call site]
00441
kh_destroy_m_i2i
[function]
[call site]
00442
cram_free_block
[function]
[call site]
00443
cram_free_block
[function]
[call site]
00444
kh_destroy_m_tagmap
[function]
[call site]
00445
free_bam_list
[function]
[call site]
00446
cram_free_container
[function]
[call site]
00447
hts_malloc_p
[function]
[call site]
00448
hts_prod_sat2
[function]
[call site]
00449
hts_malloc
[function]
[call site]
00450
__errno_location
[call site]
00451
cram_free_container
[function]
[call site]
00452
cram_free_container
[function]
[call site]
00453
int32_decode
[function]
[call site]
00454
cram_free_container
[function]
[call site]
00455
hts_log
[function]
[call site]
00456
cram_free_container
[function]
[call site]
00457
cram_free_container
[function]
[call site]
00458
cram_read_block
[function]
[call site]
00459
hgetc
[function]
[call site]
00460
hts_log
[function]
[call site]
00461
crc32
[call site]
00462
hgetc
[function]
[call site]
00463
crc32
[call site]
00464
hread
[function]
[call site]
00465
hread
[function]
[call site]
00466
int32_decode
[function]
[call site]
00467
cram_free_container
[function]
[call site]
00468
cram_uncompress_block
[function]
[call site]
00469
crc32
[call site]
00470
hts_log
[function]
[call site]
00471
__assert_fail
[call site]
00472
zlib_mem_inflate
[function]
[call site]
00473
inflateInit2_
[call site]
00474
hts_log
[function]
[call site]
00475
inflate
[call site]
00476
hts_log
[function]
[call site]
00477
inflateEnd
[call site]
00478
realloc
[call site]
00479
inflateEnd
[call site]
00480
inflateEnd
[call site]
00481
BZ2_bzBuffToBuffDecompress
[call site]
00482
lzma_mem_inflate
[function]
[call site]
00483
lzma_easy_decoder_memusage
[call site]
00484
lzma_stream_decoder
[call site]
00485
realloc
[call site]
00486
lzma_code
[call site]
00487
hts_log
[function]
[call site]
00488
lzma_code
[call site]
00489
hts_log
[function]
[call site]
00490
realloc
[call site]
00491
lzma_end
[call site]
00492
lzma_end
[call site]
00493
rans_uncompress
[function]
[call site]
00494
rans_uncompress_O1
[function]
[call site]
00495
htscodecs_tls_calloc
[function]
[call site]
00496
htscodecs_tls_alloc
[function]
[call site]
00497
pthread_once
[call site]
00498
htscodecs_tls_init
[function]
[call site]
00499
pthread_key_create
[call site]
00500
htscodecs_tls_free_all
[function]
[call site]
00501
fprintf
[call site]
00502
strerror
[call site]
00503
fprintf
[call site]
00504
pthread_getspecific
[call site]
00505
calloc
[call site]
00506
pthread_setspecific
[call site]
00507
fprintf
[call site]
00508
calloc
[call site]
00509
RansDecSymbolInit32
[function]
[call site]
00510
__assert_fail
[call site]
00511
__assert_fail
[call site]
00512
RansDecInit
[function]
[call site]
00513
RansDecInit
[function]
[call site]
00514
RansDecInit
[function]
[call site]
00515
RansDecInit
[function]
[call site]
00516
RansDecAdvanceStep
[function]
[call site]
00517
RansDecAdvanceStep
[function]
[call site]
00518
RansDecAdvanceStep
[function]
[call site]
00519
RansDecAdvanceStep
[function]
[call site]
00520
RansDecRenorm2
[function]
[call site]
00521
RansDecRenorm2
[function]
[call site]
00522
RansDecRenormSafe
[function]
[call site]
00523
RansDecRenormSafe
[function]
[call site]
00524
RansDecRenormSafe
[function]
[call site]
00525
RansDecRenormSafe
[function]
[call site]
00526
RansDecGet
[function]
[call site]
00527
RansDecRenormSafe
[function]
[call site]
00528
htscodecs_tls_free
[function]
[call site]
00529
rans_uncompress_O0
[function]
[call site]
00533
RansDecInit
[function]
[call site]
00534
RansDecInit
[function]
[call site]
00535
RansDecInit
[function]
[call site]
00536
RansDecInit
[function]
[call site]
00537
RansDecRenorm2
[function]
[call site]
00538
RansDecRenorm2
[function]
[call site]
00539
RansDecRenormSafe
[function]
[call site]
00540
RansDecRenormSafe
[function]
[call site]
00541
RansDecRenormSafe
[function]
[call site]
00542
RansDecRenormSafe
[function]
[call site]
00543
fqz_decompress
[function]
[call site]
00544
uncompress_block_fqz2f
[function]
[call site]
00545
var_get_u32
[function]
[call site]
00546
fqz_read_parameters
[function]
[call site]
00547
read_array
[function]
[call site]
00548
fqz_read_parameters1
[function]
[call site]
00549
read_array
[function]
[call site]
00550
read_array
[function]
[call site]
00551
read_array
[function]
[call site]
00552
fqz_free_parameters
[function]
[call site]
00553
fqz_create_models
[function]
[call site]
00554
htscodecs_tls_alloc
[function]
[call site]
00555
SIMPLE_MODEL256_init
[function]
[call site]
00556
SIMPLE_MODEL256_init
[function]
[call site]
00557
SIMPLE_MODEL2_init
[function]
[call site]
00558
SIMPLE_MODEL2_init
[function]
[call site]
00559
SIMPLE_MODEL256_init
[function]
[call site]
00560
RC_SetInput
[function]
[call site]
00561
RC_StartDecode
[function]
[call site]
00562
realloc
[call site]
00563
realloc
[call site]
00564
decompress_new_read
[function]
[call site]
00565
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00566
RC_GetFreq
[function]
[call site]
00567
RC_Decode
[function]
[call site]
00568
SIMPLE_MODEL256_normalize
[function]
[call site]
00569
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00570
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00571
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00572
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00573
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00574
SIMPLE_MODEL2_normalize
[function]
[call site]
00575
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00576
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00577
fqz_update_ctx
[function]
[call site]
00578
realloc
[call site]
00579
realloc
[call site]
00580
RC_FinishDecode
[function]
[call site]
00581
fqz_destroy_models
[function]
[call site]
00582
htscodecs_tls_free
[function]
[call site]
00583
fqz_free_parameters
[function]
[call site]
00584
fqz_destroy_models
[function]
[call site]
00585
fqz_free_parameters
[function]
[call site]
00586
rans_uncompress_4x16
[function]
[call site]
00587
rans_uncompress_to_4x16
[function]
[call site]
00588
var_get_u32
[function]
[call site]
00589
var_get_u32
[function]
[call site]
00590
rans_uncompress_to_4x16
[function]
[call site]
00591
unstripe
[function]
[call site]
00592
var_get_u32
[function]
[call site]
00593
hts_unpack_meta
[function]
[call site]
00594
var_get_u32
[function]
[call site]
00595
var_get_u32
[function]
[call site]
00596
var_get_u32
[function]
[call site]
00597
var_get_u32
[function]
[call site]
00598
rans_dec_func
[function]
[call site]
00599
pthread_once
[call site]
00600
htscodecs_tls_cpu_init
[function]
[call site]
00601
__get_cpuid_max
[function]
[call site]
00602
not_ancient_darwin
[function]
[call site]
00603
strerror
[call site]
00604
fprintf
[call site]
00605
fprintf
[call site]
00606
rans_dec_func
[function]
[call site]
00607
hts_rle_decode
[function]
[call site]
00608
var_get_u32
[function]
[call site]
00609
hts_unpack
[function]
[call site]
00610
arith_uncompress_to
[function]
[call site]
00611
var_get_u32
[function]
[call site]
00612
var_get_u32
[function]
[call site]
00613
arith_uncompress_to
[function]
[call site]
00614
unstripe
[function]
[call site]
00615
var_get_u32
[function]
[call site]
00616
hts_unpack_meta
[function]
[call site]
00617
var_get_u32
[function]
[call site]
00618
BZ2_bzBuffToBuffDecompress
[call site]
00619
arith_uncompress_O1_RLE
[function]
[call site]
00620
htscodecs_tls_alloc
[function]
[call site]
00621
SIMPLE_MODEL256_init
[function]
[call site]
00622
htscodecs_tls_alloc
[function]
[call site]
00623
htscodecs_tls_free
[function]
[call site]
00624
SIMPLE_MODEL258_init
[function]
[call site]
00625
RC_SetInput
[function]
[call site]
00626
RC_StartDecode
[function]
[call site]
00627
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00628
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00629
SIMPLE_MODEL258_normalize
[function]
[call site]
00630
RC_FinishDecode
[function]
[call site]
00631
htscodecs_tls_free
[function]
[call site]
00632
htscodecs_tls_free
[function]
[call site]
00633
htscodecs_tls_free
[function]
[call site]
00634
htscodecs_tls_free
[function]
[call site]
00635
arith_uncompress_O0_RLE
[function]
[call site]
00636
SIMPLE_MODEL256_init
[function]
[call site]
00637
htscodecs_tls_alloc
[function]
[call site]
00638
SIMPLE_MODEL258_init
[function]
[call site]
00639
RC_SetInput
[function]
[call site]
00640
RC_StartDecode
[function]
[call site]
00641
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00642
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00643
RC_FinishDecode
[function]
[call site]
00644
htscodecs_tls_free
[function]
[call site]
00645
htscodecs_tls_free
[function]
[call site]
00646
arith_uncompress_O1
[function]
[call site]
00647
htscodecs_tls_alloc
[function]
[call site]
00648
SIMPLE_MODEL256_init
[function]
[call site]
00649
RC_SetInput
[function]
[call site]
00650
RC_StartDecode
[function]
[call site]
00651
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00652
RC_FinishDecode
[function]
[call site]
00653
htscodecs_tls_free
[function]
[call site]
00654
htscodecs_tls_free
[function]
[call site]
00655
arith_uncompress_O0
[function]
[call site]
00656
SIMPLE_MODEL256_init
[function]
[call site]
00657
RC_SetInput
[function]
[call site]
00658
RC_StartDecode
[function]
[call site]
00659
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00660
RC_FinishDecode
[function]
[call site]
00661
hts_unpack
[function]
[call site]
00662
tok3_decode_names
[function]
[call site]
00663
create_context
[function]
[call site]
00664
fprintf
[call site]
00665
htscodecs_tls_alloc
[function]
[call site]
00666
uncompressed_size
[function]
[call site]
00667
var_get_u32
[function]
[call site]
00668
var_get_u32
[function]
[call site]
00669
uncompress
[function]
[call site]
00670
var_get_u32
[function]
[call site]
00671
arith_decode
[function]
[call site]
00672
var_get_u32
[function]
[call site]
00673
arith_uncompress_to
[function]
[call site]
00674
rans_decode
[function]
[call site]
00675
var_get_u32
[function]
[call site]
00676
rans_uncompress_to_4x16
[function]
[call site]
00677
decode_name
[function]
[call site]
00678
decode_token_type
[function]
[call site]
00679
decode_token_int
[function]
[call site]
00680
strlen
[call site]
00681
strcpy
[call site]
00682
strlen
[call site]
00683
decode_token_type
[function]
[call site]
00684
decode_token_char
[function]
[call site]
00685
decode_token_alpha
[function]
[call site]
00686
decode_token_int1
[function]
[call site]
00687
decode_token_int
[function]
[call site]
00688
append_uint32_fixed
[function]
[call site]
00689
decode_token_int1
[function]
[call site]
00690
append_uint32_fixed
[function]
[call site]
00691
decode_token_int
[function]
[call site]
00692
append_uint32_var
[function]
[call site]
00693
decode_token_int1
[function]
[call site]
00694
append_uint32_var
[function]
[call site]
00695
append_uint32_var
[function]
[call site]
00696
append_uint32_fixed
[function]
[call site]
00697
realloc
[call site]
00698
free_context
[function]
[call site]
00699
pool_destroy
[function]
[call site]
00700
htscodecs_tls_free
[function]
[call site]
00701
free_context
[function]
[call site]
00702
cram_free_container
[function]
[call site]
00703
cram_free_block
[function]
[call site]
00704
int32_get_blk
[function]
[call site]
00705
cram_free_container
[function]
[call site]
00706
cram_free_block
[function]
[call site]
00707
cram_free_container
[function]
[call site]
00708
cram_free_block
[function]
[call site]
00709
cram_free_block
[function]
[call site]
00710
cram_read_block
[function]
[call site]
00711
cram_free_container
[function]
[call site]
00712
cram_free_block
[function]
[call site]
00713
cram_free_container
[function]
[call site]
00714
hread
[function]
[call site]
00715
cram_free_container
[function]
[call site]
00716
cram_free_container
[function]
[call site]
00717
sam_hdr_init
[function]
[call site]
00718
calloc
[call site]
00719
sam_hdr_add_lines
[function]
[call site]
00720
sam_hdr_fill_hrecs
[function]
[call site]
00721
sam_hrecs_new
[function]
[call site]
00722
calloc
[call site]
00723
kh_init_sam_hrecs_t
[function]
[call site]
00724
calloc
[call site]
00725
kh_init_m_s2i
[function]
[call site]
00726
calloc
[call site]
00727
kh_init_m_s2i
[function]
[call site]
00728
kh_init_m_s2i
[function]
[call site]
00729
pool_create
[function]
[call site]
00730
next_power_2
[function]
[call site]
00731
pool_create
[function]
[call site]
00732
string_pool_create
[function]
[call site]
00733
sam_hrecs_init_type_order
[function]
[call site]
00734
calloc
[call site]
00735
kh_destroy_sam_hrecs_t
[function]
[call site]
00736
pool_destroy
[function]
[call site]
00737
pool_destroy
[function]
[call site]
00738
string_pool_destroy
[function]
[call site]
00739
sam_hrecs_refs_from_targets_array
[function]
[call site]
00740
hts_log
[function]
[call site]
00741
hts_realloc_p
[function]
[call site]
00742
hts_prod_sat2
[function]
[call site]
00743
hts_realloc
[function]
[call site]
00744
__errno_location
[call site]
00745
realloc
[call site]
00746
kh_grow_to_fit_m_s2i
[function]
[call site]
00747
kh_resize_m_s2i
[function]
[call site]
00748
__errno_location
[call site]
00749
__ac_FNV1a_hash_string
[function]
[call site]
00750
string_dup
[function]
[call site]
00751
strlen
[call site]
00752
string_ndup
[function]
[call site]
00753
string_alloc
[function]
[call site]
00754
new_string_pool
[function]
[call site]
00755
hts_realloc_p
[function]
[call site]
00756
hts_prod_sat2
[function]
[call site]
00757
hts_realloc
[function]
[call site]
00758
hts_malloc
[function]
[call site]
00759
kh_get_s2i
[function]
[call site]
00760
__ac_FNV1a_hash_string
[function]
[call site]
00761
strcmp
[call site]
00762
kh_put_m_s2i
[function]
[call site]
00763
strcmp
[call site]
00764
hts_log
[function]
[call site]
00765
__errno_location
[call site]
00766
strerror
[call site]
00767
hts_log
[function]
[call site]
00768
kh_get_m_s2i
[function]
[call site]
00769
kh_del_m_s2i
[function]
[call site]
00770
sam_hrecs_free
[function]
[call site]
00771
kh_destroy_sam_hrecs_t
[function]
[call site]
00772
kh_destroy_m_s2i
[function]
[call site]
00773
kh_destroy_m_s2i
[function]
[call site]
00774
kh_destroy_m_s2i
[function]
[call site]
00775
pool_destroy
[function]
[call site]
00776
pool_destroy
[function]
[call site]
00777
string_pool_destroy
[function]
[call site]
00778
sam_hrecs_parse_lines
[function]
[call site]
00779
strlen
[call site]
00780
sam_hrecs_error
[function]
[call site]
00781
hts_log
[function]
[call site]
00782
sam_hrecs_parse_single_line
[function]
[call site]
00783
sam_hrecs_error
[function]
[call site]
00784
isalpha_c
[function]
[call site]
00785
__ctype_b_loc
[call site]
00786
sam_hrecs_error
[function]
[call site]
00787
TYPEKEY
[function]
[call site]
00788
pool_alloc
[function]
[call site]
00789
new_pool
[function]
[call site]
00790
hts_realloc_ps
[function]
[call site]
00791
hts_add_sat2
[function]
[call site]
00792
hts_prod_sat2
[function]
[call site]
00793
hts_realloc
[function]
[call site]
00794
hts_malloc_p
[function]
[call site]
00795
kh_put_sam_hrecs_t
[function]
[call site]
00796
kh_resize_sam_hrecs_t
[function]
[call site]
00797
realloc
[call site]
00798
TYPEKEY
[function]
[call site]
00799
parse_comment_line
[function]
[call site]
00800
sam_hrecs_error
[function]
[call site]
00801
warn_if_known_stderr
[function]
[call site]
00802
kmemmem
[function]
[call site]
00803
boyer_moore
[function]
[call site]
00804
memchr
[call site]
00805
ksBM_prep
[function]
[call site]
00806
hts_calloc_ps
[function]
[call site]
00807
hts_add_sat2
[function]
[call site]
00808
hts_calloc
[function]
[call site]
00809
__errno_location
[call site]
00810
calloc
[call site]
00811
calloc
[call site]
00812
karp_rabin
[function]
[call site]
00813
fast_exp
[function]
[call site]
00814
memcmp
[call site]
00815
known_stderr
[function]
[call site]
00816
hts_log
[function]
[call site]
00817
hts_log
[function]
[call site]
00818
kmemmem
[function]
[call site]
00819
known_stderr
[function]
[call site]
00820
kmemmem
[function]
[call site]
00821
known_stderr
[function]
[call site]
00822
pool_alloc
[function]
[call site]
00823
string_ndup
[function]
[call site]
00824
parse_noncomment_line
[function]
[call site]
00825
TYPEKEY
[function]
[call site]
00826
sam_hrecs_error
[function]
[call site]
00827
warn_if_known_stderr
[function]
[call site]
00828
sam_hrecs_error
[function]
[call site]
00829
warn_if_known_stderr
[function]
[call site]
00830
pool_alloc
[function]
[call site]
00831
string_ndup
[function]
[call site]
00832
sam_hrecs_global_list_add
[function]
[call site]
00833
TYPEKEY
[function]
[call site]
00834
__assert_fail
[call site]
00835
sam_hrecs_free_tags
[function]
[call site]
00836
sam_hrecs_free_tags
[function]
[call site]
00837
pool_free
[function]
[call site]
00838
pool_free
[function]
[call site]
00839
TYPEKEY
[function]
[call site]
00840
kh_grow_to_fit_m_s2i
[function]
[call site]
00841
hts_realloc_p
[function]
[call site]
00842
sam_hrecs_update_hashes
[function]
[call site]
00843
TYPEKEY
[function]
[call site]
00844
__assert_fail
[call site]
00845
__assert_fail
[call site]
00846
strtoll
[call site]
00847
__assert_fail
[call site]
00848
hts_log
[function]
[call site]
00849
hts_log
[function]
[call site]
00850
hts_log
[function]
[call site]
00851
kh_get_m_s2i
[function]
[call site]
00852
snprintf
[call site]
00853
sam_hrecs_update
[function]
[call site]
00854
sam_hrecs_vupdate
[function]
[call site]
00855
sam_hrecs_find_key
[function]
[call site]
00856
pool_alloc
[function]
[call site]
00857
strlen
[call site]
00858
hts_add_sat2
[function]
[call site]
00859
string_alloc
[function]
[call site]
00860
snprintf
[call site]
00861
sam_hrecs_add_ref_altnames
[function]
[call site]
00862
kstrtok
[function]
[call site]
00863
strchr
[call site]
00864
strlen
[call site]
00865
string_ndup
[function]
[call site]
00866
kh_put_m_s2i
[function]
[call site]
00867
hts_log
[function]
[call site]
00868
strcmp
[call site]
00869
sam_hrecs_add_ref_altnames
[function]
[call site]
00870
strcmp
[call site]
00871
hts_log
[function]
[call site]
00872
hts_log
[function]
[call site]
00873
hts_realloc_p
[function]
[call site]
00874
kh_put_m_s2i
[function]
[call site]
00875
sam_hrecs_add_ref_altnames
[function]
[call site]
00876
TYPEKEY
[function]
[call site]
00877
sam_hrecs_find_key
[function]
[call site]
00878
hts_log
[function]
[call site]
00879
__assert_fail
[call site]
00880
kh_get_m_s2i
[function]
[call site]
00881
__assert_fail
[call site]
00882
hts_log
[function]
[call site]
00883
hts_realloc_p
[function]
[call site]
00884
kh_put_m_s2i
[function]
[call site]
00885
TYPEKEY
[function]
[call site]
00886
hts_realloc_p
[function]
[call site]
00887
__assert_fail
[call site]
00888
hts_log
[function]
[call site]
00889
kh_get_m_s2i
[function]
[call site]
00890
kh_put_m_s2i
[function]
[call site]
00891
hts_realloc_p
[function]
[call site]
00892
sam_hrecs_free
[function]
[call site]
00893
add_stub_ref_sq_lines
[function]
[call site]
00894
snprintf
[call site]
00895
sam_hrecs_add
[function]
[call site]
00896
sam_hrecs_vadd
[function]
[call site]
00897
TYPEKEY
[function]
[call site]
00898
strncmp
[call site]
00899
sam_hrecs_find_type_id
[function]
[call site]
00900
kh_get_m_s2i
[function]
[call site]
00901
kh_get_m_s2i
[function]
[call site]
00902
kh_get_m_s2i
[function]
[call site]
00903
TYPEKEY
[function]
[call site]
00904
kh_get_sam_hrecs_t
[function]
[call site]
00905
sam_hrecs_vupdate
[function]
[call site]
00906
pool_alloc
[function]
[call site]
00907
kh_put_sam_hrecs_t
[function]
[call site]
00908
__assert_fail
[call site]
00909
sam_hrecs_global_list_add
[function]
[call site]
00910
__assert_fail
[call site]
00911
__assert_fail
[call site]
00912
__assert_fail
[call site]
00913
__assert_fail
[call site]
00914
strncmp
[call site]
00915
pool_alloc
[function]
[call site]
00916
strncmp
[call site]
00917
strlen
[call site]
00918
hts_add_sat2
[function]
[call site]
00919
string_alloc
[function]
[call site]
00920
snprintf
[call site]
00921
strlen
[call site]
00922
string_ndup
[function]
[call site]
00923
strncmp
[call site]
00924
pool_alloc
[function]
[call site]
00925
strncmp
[call site]
00926
strlen
[call site]
00927
hts_add_sat2
[function]
[call site]
00928
string_alloc
[function]
[call site]
00929
snprintf
[call site]
00930
strlen
[call site]
00931
string_ndup
[function]
[call site]
00932
TYPEKEY
[function]
[call site]
00933
sam_hrecs_update_hashes
[function]
[call site]
00934
strncmp
[call site]
00935
hts_log
[function]
[call site]
00936
sam_hrecs_free
[function]
[call site]
00937
rebuild_target_arrays
[function]
[call site]
00938
sam_hdr_update_target_arrays
[function]
[call site]
00939
hts_realloc_p
[function]
[call site]
00940
hts_realloc_p
[function]
[call site]
00941
strcmp
[call site]
00942
strdup
[call site]
00943
kh_get_s2i
[function]
[call site]
00944
kh_del_s2i
[function]
[call site]
00945
kh_init_s2i
[function]
[call site]
00946
calloc
[call site]
00947
kh_put_s2i
[function]
[call site]
00948
kh_resize_s2i
[function]
[call site]
00949
__errno_location
[call site]
00950
realloc
[call site]
00951
kh_get_s2i
[function]
[call site]
00952
kh_del_s2i
[function]
[call site]
00953
sam_hrecs_parse_lines
[function]
[call site]
00954
rebuild_target_arrays
[function]
[call site]
00955
redact_header_text
[function]
[call site]
00956
__assert_fail
[call site]
00957
sam_hdr_destroy
[function]
[call site]
00958
sam_hrecs_free
[function]
[call site]
00959
kh_destroy_s2i
[function]
[call site]
00960
cram_free_file_def
[function]
[call site]
00961
calloc
[call site]
00962
strncpy
[call site]
00963
cram_init_tables
[function]
[call site]
00964
strrchr
[call site]
00965
strdup
[call site]
00966
refs_create
[function]
[call site]
00967
calloc
[call site]
00968
string_pool_create
[function]
[call site]
00969
kh_init_refs
[function]
[call site]
00970
calloc
[call site]
00971
pthread_mutex_init
[call site]
00972
refs_free
[function]
[call site]
00973
string_pool_destroy
[function]
[call site]
00974
ref_entry_free_seq
[function]
[call site]
00975
mfclose
[function]
[call site]
00976
mfflush
[function]
[call site]
00977
fwrite
[call site]
00978
fflush
[call site]
00979
fseek
[call site]
00980
fwrite
[call site]
00981
fflush
[call site]
00982
ftell
[call site]
00983
fileno
[call site]
00984
ftell
[call site]
00985
ftruncate
[call site]
00986
munmap
[call site]
00987
fclose
[call site]
00988
mfdestroy
[function]
[call site]
00989
kh_destroy_refs
[function]
[call site]
00990
bgzf_close
[function]
[call site]
00991
bgzf_flush
[function]
[call site]
00992
mt_queue
[function]
[call site]
00993
pthread_mutex_lock
[call site]
00994
pool_alloc
[function]
[call site]
00995
pthread_mutex_unlock
[call site]
00996
hts_tpool_dispatch3
[function]
[call site]
00997
pthread_mutex_lock
[call site]
00998
pthread_mutex_unlock
[call site]
00999
__errno_location
[call site]
01000
pthread_mutex_unlock
[call site]
01001
pthread_cond_wait
[call site]
01002
pthread_mutex_unlock
[call site]
01003
wake_next_worker
[function]
[call site]
01004
pthread_mutex_lock
[call site]
01005
__assert_fail
[call site]
01006
__assert_fail
[call site]
01007
pthread_cond_signal
[call site]
01008
pthread_mutex_unlock
[call site]
01009
pthread_mutex_unlock
[call site]
01010
bgzf_encode_level0_func
[function]
[call site]
01011
u16_to_le
[function]
[call site]
01012
u16_to_le
[function]
[call site]
01013
u16_to_le
[function]
[call site]
01014
hts_crc32
[function]
[call site]
01015
crc32
[call site]
01016
u32_to_le
[function]
[call site]
01017
u32_to_le
[function]
[call site]
01018
job_cleanup
[function]
[call site]
01019
pthread_mutex_lock
[call site]
01020
pool_free
[function]
[call site]
01021
pthread_mutex_unlock
[call site]
01022
hts_tpool_dispatch3
[function]
[call site]
01023
bgzf_encode_func
[function]
[call site]
01024
bgzf_compress
[function]
[call site]
01025
u16_to_le
[function]
[call site]
01026
u16_to_le
[function]
[call site]
01027
deflateInit2_
[call site]
01028
bgzf_zerr
[function]
[call site]
01029
hts_log
[function]
[call site]
01030
deflate
[call site]
01031
deflateEnd
[call site]
01032
bgzf_zerr
[function]
[call site]
01033
hts_log
[function]
[call site]
01034
deflateEnd
[call site]
01035
deflateEnd
[call site]
01036
bgzf_zerr
[function]
[call site]
01037
hts_log
[function]
[call site]
01038
packInt16
[function]
[call site]
01039
crc32
[call site]
01040
packInt32
[function]
[call site]
01041
packInt32
[function]
[call site]
01042
job_cleanup
[function]
[call site]
01043
job_cleanup
[function]
[call site]
01044
pthread_mutex_lock
[call site]
01045
pthread_mutex_unlock
[call site]
01046
mt_flush_queue
[function]
[call site]
01047
pthread_mutex_lock
[call site]
01048
hts_tpool_process_is_shutdown
[function]
[call site]
01049
pthread_mutex_lock
[call site]
01050
pthread_mutex_unlock
[call site]
01051
pthread_mutex_unlock
[call site]
01052
hts_usleep
[function]
[call site]
01053
nanosleep
[call site]
01054
pthread_mutex_lock
[call site]
01055
pthread_mutex_unlock
[call site]
01056
hts_tpool_process_flush
[function]
[call site]
01057
pthread_mutex_lock
[call site]
01058
pthread_cond_signal
[call site]
01059
pthread_cond_wait
[call site]
01060
gettimeofday
[call site]
01061
pthread_cond_timedwait
[call site]
01062
gettimeofday
[call site]
01063
pthread_cond_timedwait
[call site]
01064
pthread_mutex_unlock
[call site]
01065
pthread_mutex_lock
[call site]
01066
pthread_mutex_unlock
[call site]
01067
hflush
[function]
[call site]
01068
flush_buffer
[function]
[call site]
01069
__errno_location
[call site]
01070
bgzf_index_add_block
[function]
[call site]
01071
bgzf_index_grow
[function]
[call site]
01072
hts_realloc_p
[function]
[call site]
01073
deflate_block
[function]
[call site]
01074
bgzf_compress
[function]
[call site]
01075
bgzf_gzip_compress
[function]
[call site]
01076
deflate
[call site]
01077
bgzf_zerr
[function]
[call site]
01078
hts_log
[function]
[call site]
01079
hts_log
[function]
[call site]
01080
hts_log
[function]
[call site]
01081
bgzf_zerr
[function]
[call site]
01082
hts_log
[function]
[call site]
01083
hwrite
[function]
[call site]
01084
hfile_set_blksize
[function]
[call site]
01085
realloc
[call site]
01086
hwrite2
[function]
[call site]
01087
flush_buffer
[function]
[call site]
01088
__errno_location
[call site]
01089
hwrite2
[function]
[call site]
01090
hts_log
[function]
[call site]
01091
bgzf_close_mt
[function]
[call site]
01092
mt_destroy
[function]
[call site]
01093
pthread_mutex_lock
[call site]
01094
pthread_cond_signal
[call site]
01095
hts_tpool_wake_dispatch
[function]
[call site]
01096
pthread_mutex_lock
[call site]
01097
pthread_cond_signal
[call site]
01098
pthread_mutex_unlock
[call site]
01099
pthread_mutex_unlock
[call site]
01100
hts_tpool_process_is_shutdown
[function]
[call site]
01101
hts_tpool_process_destroy
[function]
[call site]
01102
pthread_mutex_lock
[call site]
01103
pthread_mutex_unlock
[call site]
01104
hts_tpool_process_reset
[function]
[call site]
01105
pthread_mutex_lock
[call site]
01106
pthread_mutex_unlock
[call site]
01107
hts_tpool_delete_result
[function]
[call site]
01108
hts_tpool_process_flush
[function]
[call site]
01109
pthread_mutex_lock
[call site]
01110
pthread_cond_signal
[call site]
01111
pthread_mutex_unlock
[call site]
01112
hts_tpool_delete_result
[function]
[call site]
01113
pthread_mutex_lock
[call site]
01114
hts_tpool_process_detach_locked
[function]
[call site]
01115
hts_tpool_process_shutdown_locked
[function]
[call site]
01116
pthread_cond_broadcast
[call site]
01117
pthread_cond_broadcast
[call site]
01118
pthread_cond_broadcast
[call site]
01119
pthread_cond_broadcast
[call site]
01120
pthread_mutex_unlock
[call site]
01121
pthread_cond_destroy
[call site]
01122
pthread_cond_destroy
[call site]
01123
pthread_cond_destroy
[call site]
01124
pthread_cond_destroy
[call site]
01125
pthread_mutex_unlock
[call site]
01126
pthread_join
[call site]
01127
pthread_mutex_destroy
[call site]
01128
pthread_mutex_destroy
[call site]
01129
pthread_mutex_destroy
[call site]
01130
pthread_cond_destroy
[call site]
01131
pool_free
[function]
[call site]
01132
hts_tpool_destroy
[function]
[call site]
01133
pthread_mutex_lock
[call site]
01134
pthread_cond_signal
[call site]
01135
pthread_mutex_unlock
[call site]
01136
pthread_join
[call site]
01137
pthread_mutex_destroy
[call site]
01138
pthread_cond_destroy
[call site]
01139
pool_destroy
[function]
[call site]
01140
fflush
[call site]
01141
deflate_block
[function]
[call site]
01142
bgzf_zerr
[function]
[call site]
01143
hts_log
[function]
[call site]
01144
bgzf_close_mt
[function]
[call site]
01145
hwrite
[function]
[call site]
01146
hflush
[function]
[call site]
01147
hts_log
[function]
[call site]
01148
bgzf_close_mt
[function]
[call site]
01149
inflateEnd
[call site]
01150
deflateEnd
[call site]
01151
bgzf_zerr
[function]
[call site]
01152
hts_log
[function]
[call site]
01153
hclose
[function]
[call site]
01154
writebuffer_is_nonempty
[function]
[call site]
01155
hflush
[function]
[call site]
01156
__errno_location
[call site]
01157
hfile_destroy
[function]
[call site]
01158
__errno_location
[call site]
01159
bgzf_index_destroy
[function]
[call site]
01160
free_cache
[function]
[call site]
01161
kh_destroy_bgzf_cache
[function]
[call site]
01162
bgzf_clear_private_data
[function]
[call site]
01163
__assert_fail
[call site]
01164
pthread_mutex_destroy
[call site]
01165
pthread_mutex_init
[call site]
01166
pthread_mutex_init
[call site]
01167
pthread_mutex_init
[call site]
01168
pthread_mutex_init
[call site]
01169
cram_new_metrics
[function]
[call site]
01170
calloc
[call site]
01171
kh_init_m_metrics
[function]
[call site]
01172
calloc
[call site]
01173
refs_from_header
[function]
[call site]
01174
sam_hdr_fill_hrecs
[function]
[call site]
01175
hts_realloc_ps
[function]
[call site]
01176
kh_get_refs
[function]
[call site]
01177
__ac_FNV1a_hash_string
[function]
[call site]
01178
strcmp
[call site]
01179
calloc
[call site]
01180
string_dup
[function]
[call site]
01181
sam_hrecs_find_type_id
[function]
[call site]
01182
sam_hrecs_find_key
[function]
[call site]
01183
string_dup
[function]
[call site]
01184
sam_hrecs_find_key
[function]
[call site]
01185
strtoll
[call site]
01186
kh_put_refs
[function]
[call site]
01187
kh_resize_refs
[function]
[call site]
01188
__errno_location
[call site]
01189
realloc
[call site]
01190
cram_set_option
[function]
[call site]
01191
cram_set_voption
[function]
[call site]
01192
__errno_location
[call site]
01193
strdup
[call site]
01194
refs_free
[function]
[call site]
01195
cram_seek_to_refpos
[function]
[call site]
01196
cram_index_query
[function]
[call site]
01197
cram_seek
[function]
[call site]
01198
cram_drain_rqueue
[function]
[call site]
01199
hts_tpool_process_empty
[function]
[call site]
01200
pthread_mutex_lock
[call site]
01201
pthread_mutex_unlock
[call site]
01202
hts_tpool_next_result_wait
[function]
[call site]
01203
pthread_mutex_lock
[call site]
01204
hts_tpool_next_result_locked
[function]
[call site]
01205
pthread_cond_signal
[call site]
01206
wake_next_worker
[function]
[call site]
01207
gettimeofday
[call site]
01208
pthread_mutex_unlock
[call site]
01209
hts_tpool_process_destroy
[function]
[call site]
01210
pthread_cond_timedwait
[call site]
01211
pthread_mutex_unlock
[call site]
01212
hts_tpool_result_data
[function]
[call site]
01213
cram_free_container
[function]
[call site]
01214
cram_free_slice
[function]
[call site]
01215
hts_tpool_delete_result
[function]
[call site]
01216
cram_free_container
[function]
[call site]
01217
cram_free_slice
[function]
[call site]
01218
cram_free_container
[function]
[call site]
01219
hseek
[function]
[call site]
01220
pthread_mutex_lock
[call site]
01221
pthread_mutex_unlock
[call site]
01222
cram_free_container
[function]
[call site]
01223
cram_free_container
[function]
[call site]
01224
pthread_mutex_lock
[call site]
01225
pthread_mutex_unlock
[call site]
01226
pthread_mutex_lock
[call site]
01227
pthread_mutex_unlock
[call site]
01228
pthread_mutex_lock
[call site]
01229
pthread_mutex_unlock
[call site]
01230
cram_load_reference
[function]
[call site]
01231
refs_load_fai
[function]
[call site]
01232
strlen
[call site]
01233
refs_create
[function]
[call site]
01234
bgzf_close
[function]
[call site]
01235
strstr
[call site]
01236
string_ndup
[function]
[call site]
01237
snprintf
[call site]
01238
strcmp
[call site]
01239
string_ndup
[function]
[call site]
01240
snprintf
[call site]
01241
string_dup
[function]
[call site]
01242
snprintf
[call site]
01243
bgzf_open_ref
[function]
[call site]
01244
strncmp
[call site]
01245
hisremote
[function]
[call site]
01246
find_scheme_handler
[function]
[call site]
01247
snprintf
[call site]
01248
access
[call site]
01249
fai_build
[function]
[call site]
01250
fai_build3
[function]
[call site]
01251
fai_build3_core
[function]
[call site]
01252
bgzf_open
[function]
[call site]
01253
strchr
[call site]
01254
hopen
[function]
[call site]
01255
bgzf_read_init
[function]
[call site]
01256
hclose_abruptly
[function]
[call site]
01257
strchr
[call site]
01258
hopen
[function]
[call site]
01259
bgzf_write_init
[function]
[call site]
01260
__errno_location
[call site]
01261
ed_is_big
[function]
[call site]
01262
__errno_location
[call site]
01263
strerror
[call site]
01264
hts_log
[function]
[call site]
01265
bgzf_index_build_init
[function]
[call site]
01266
bgzf_index_destroy
[function]
[call site]
01267
calloc
[call site]
01268
hts_log
[function]
[call site]
01269
fai_build_core
[function]
[call site]
01270
calloc
[call site]
01271
kh_init_s
[function]
[call site]
01272
bgzf_getc_
[function]
[call site]
01273
bgzf_getc
[function]
[call site]
01274
bgzf_read_block
[function]
[call site]
01275
hts_tpool_next_result_wait
[function]
[call site]
01276
hts_tpool_result_data
[function]
[call site]
01277
hts_malloc_p
[function]
[call site]
01278
mt_destroy
[function]
[call site]
01279
hts_log
[function]
[call site]
01280
hts_tpool_delete_result
[function]
[call site]
01281
hts_log
[function]
[call site]
01282
hts_tpool_delete_result
[function]
[call site]
01283
bgzf_index_add_block
[function]
[call site]
01284
hts_tpool_delete_result
[function]
[call site]
01285
pthread_mutex_lock
[call site]
01286
pool_free
[function]
[call site]
01287
pthread_mutex_unlock
[call site]
01288
hts_tpool_delete_result
[function]
[call site]
01289
bgzf_htell
[function]
[call site]
01290
pthread_mutex_lock
[call site]
01291
pthread_mutex_unlock
[call site]
01292
htell
[function]
[call site]
01293
hread
[function]
[call site]
01294
__errno_location
[call site]
01295
strerror
[call site]
01296
hts_log
[function]
[call site]
01297
inflate_gzip_block
[function]
[call site]
01298
hread
[function]
[call site]
01299
inflate
[call site]
01300
bgzf_zerr
[function]
[call site]
01301
hts_log
[function]
[call site]
01302
hpeek
[function]
[call site]
01303
inflateReset
[call site]
01304
bgzf_zerr
[function]
[call site]
01305
hts_log
[function]
[call site]
01306
hts_log
[function]
[call site]
01307
hts_log
[function]
[call site]
01308
load_block_from_cache
[function]
[call site]
01309
kh_get_bgzf_cache
[function]
[call site]
01310
hseek
[function]
[call site]
01311
hts_log
[function]
[call site]
01312
exit
[call site]
01313
hread
[function]
[call site]
01314
hts_log
[function]
[call site]
01315
check_header
[function]
[call site]
01316
unpackInt16
[function]
[call site]
01317
unpackInt16
[function]
[call site]
01318
hts_log
[function]
[call site]
01319
hread
[function]
[call site]
01320
calloc
[call site]
01321
inflateInit2_
[call site]
01322
bgzf_zerr
[function]
[call site]
01323
hts_log
[function]
[call site]
01324
inflate_gzip_block
[function]
[call site]
01325
hts_log
[function]
[call site]
01326
unpackInt16
[function]
[call site]
01327
hts_log
[function]
[call site]
01328
hread
[function]
[call site]
01329
hts_log
[function]
[call site]
01330
inflate_block
[function]
[call site]
01331
le_to_u32
[function]
[call site]
01332
bgzf_uncompress
[function]
[call site]
01333
inflateInit2_
[call site]
01334
bgzf_zerr
[function]
[call site]
01335
hts_log
[function]
[call site]
01336
inflate
[call site]
01337
bgzf_zerr
[function]
[call site]
01338
hts_log
[function]
[call site]
01339
inflateEnd
[call site]
01340
bgzf_zerr
[function]
[call site]
01341
hts_log
[function]
[call site]
01342
inflateEnd
[call site]
01343
bgzf_zerr
[function]
[call site]
01344
hts_log
[function]
[call site]
01345
crc32
[call site]
01346
hts_log
[function]
[call site]
01347
bgzf_zerr
[function]
[call site]
01348
hts_log
[function]
[call site]
01349
bgzf_htell
[function]
[call site]
01350
bgzf_index_add_block
[function]
[call site]
01351
cache_block
[function]
[call site]
01352
kh_del_bgzf_cache
[function]
[call site]
01353
kh_put_bgzf_cache
[function]
[call site]
01354
kh_resize_bgzf_cache
[function]
[call site]
01355
__errno_location
[call site]
01356
realloc
[call site]
01357
bgzf_htell
[function]
[call site]
01358
hts_log
[function]
[call site]
01359
hts_log
[function]
[call site]
01360
bgzf_getc_
[function]
[call site]
01361
hts_log
[function]
[call site]
01362
__ctype_b_loc
[call site]
01363
hts_log
[function]
[call site]
01364
fai_insert_index
[function]
[call site]
01365
hts_log
[function]
[call site]
01366
hts_log
[function]
[call site]
01367
hts_log
[function]
[call site]
01368
hts_log
[function]
[call site]
01369
hts_realloc_p
[function]
[call site]
01370
hts_log
[function]
[call site]
01371
strdup
[call site]
01372
__errno_location
[call site]
01373
strerror
[call site]
01374
hts_log
[function]
[call site]
01375
kh_put_s
[function]
[call site]
01376
kh_resize_s
[function]
[call site]
01377
__ac_FNV1a_hash_string
[function]
[call site]
01378
__errno_location
[call site]
01379
strerror
[call site]
01380
hts_log
[function]
[call site]
01381
hts_log
[function]
[call site]
01382
__ctype_b_loc
[call site]
01383
kputc_
[function]
[call site]
01384
ks_resize
[function]
[call site]
01385
bgzf_getc_
[function]
[call site]
01386
kputsn
[function]
[call site]
01387
hts_log
[function]
[call site]
01388
bgzf_getc_
[function]
[call site]
01389
bgzf_utell
[function]
[call site]
01390
bgzf_getc_
[function]
[call site]
01391
bgzf_utell
[function]
[call site]
01392
hts_log
[function]
[call site]
01393
isgraph_
[function]
[call site]
01394
bgzf_getc_
[function]
[call site]
01395
hts_log
[function]
[call site]
01396
bgzf_getc_
[function]
[call site]
01397
bgzf_utell
[function]
[call site]
01398
hts_log
[function]
[call site]
01399
hts_log
[function]
[call site]
01400
isgraph_
[function]
[call site]
01401
bgzf_getc_
[function]
[call site]
01402
hts_log
[function]
[call site]
01403
hts_log
[function]
[call site]
01404
hts_log
[function]
[call site]
01405
fai_insert_index
[function]
[call site]
01406
hts_log
[function]
[call site]
01407
fai_destroy
[function]
[call site]
01408
kh_destroy_s
[function]
[call site]
01409
bgzf_close
[function]
[call site]
01410
hts_log
[function]
[call site]
01411
ksprintf
[function]
[call site]
01412
ksprintf
[function]
[call site]
01413
bgzf_index_dump
[function]
[call site]
01414
hts_log
[function]
[call site]
01415
__errno_location
[call site]
01416
get_name_suffix
[function]
[call site]
01417
strlen
[call site]
01418
snprintf
[call site]
01419
hopen
[function]
[call site]
01420
bgzf_index_dump_hfile
[function]
[call site]
01421
hts_log
[function]
[call site]
01422
__errno_location
[call site]
01423
bgzf_flush
[function]
[call site]
01424
hwrite_uint64
[function]
[call site]
01425
ed_is_big
[function]
[call site]
01426
ed_swap_8
[function]
[call site]
01427
hwrite
[function]
[call site]
01428
hwrite_uint64
[function]
[call site]
01429
hwrite_uint64
[function]
[call site]
01430
__errno_location
[call site]
01431
strerror
[call site]
01432
hts_log
[function]
[call site]
01433
hclose
[function]
[call site]
01434
__errno_location
[call site]
01435
strerror
[call site]
01436
hts_log
[function]
[call site]
01437
hclose_abruptly
[function]
[call site]
01438
hts_log
[function]
[call site]
01439
bgzf_close
[function]
[call site]
01440
__errno_location
[call site]
01441
strerror
[call site]
01442
hts_log
[function]
[call site]
01443
hopen
[function]
[call site]
01444
__errno_location
[call site]
01445
strerror
[call site]
01446
hts_log
[function]
[call site]
01447
fai_save
[function]
[call site]
01448
kh_get_s
[function]
[call site]
01449
__assert_fail
[call site]
01450
snprintf
[call site]
01451
snprintf
[call site]
01452
hputs
[function]
[call site]
01453
strlen
[call site]
01454
hputs2
[function]
[call site]
01455
hwrite2
[function]
[call site]
01456
hputs
[function]
[call site]
01457
strerror
[call site]
01458
hts_log
[function]
[call site]
01459
hclose
[function]
[call site]
01460
__errno_location
[call site]
01461
strerror
[call site]
01462
hts_log
[function]
[call site]
01463
fai_destroy
[function]
[call site]
01464
__errno_location
[call site]
01465
bgzf_close
[function]
[call site]
01466
fai_destroy
[function]
[call site]
01467
__errno_location
[call site]
01468
bgzf_open
[function]
[call site]
01469
perror
[call site]
01470
bgzf_index_load
[function]
[call site]
01471
get_name_suffix
[function]
[call site]
01472
hopen
[function]
[call site]
01473
bgzf_index_load_hfile
[function]
[call site]
01474
calloc
[call site]
01475
hread_uint64
[function]
[call site]
01476
hread
[function]
[call site]
01477
ed_is_big
[function]
[call site]
01478
ed_swap_8p
[function]
[call site]
01479
hread_uint64
[function]
[call site]
01480
hread_uint64
[function]
[call site]
01481
__errno_location
[call site]
01482
strerror
[call site]
01483
hts_log
[function]
[call site]
01484
hclose
[function]
[call site]
01485
__errno_location
[call site]
01486
strerror
[call site]
01487
hts_log
[function]
[call site]
01488
hclose_abruptly
[function]
[call site]
01489
hts_log
[function]
[call site]
01490
bgzf_close
[function]
[call site]
01491
hts_log
[function]
[call site]
01492
hopen
[function]
[call site]
01493
hts_log
[function]
[call site]
01494
perror
[call site]
01495
hgets
[function]
[call site]
01496
__errno_location
[call site]
01497
hgetln
[function]
[call site]
01498
hgetdelim
[function]
[call site]
01499
__errno_location
[call site]
01500
writebuffer_is_nonempty
[function]
[call site]
01501
__errno_location
[call site]
01502
memchr
[call site]
01503
refill_buffer
[function]
[call site]
01504
isspace_c
[function]
[call site]
01505
string_dup
[function]
[call site]
01506
isspace_c
[function]
[call site]
01507
strtoll
[call site]
01508
isspace_c
[function]
[call site]
01509
strtoll
[call site]
01510
isspace_c
[function]
[call site]
01511
strtol
[call site]
01512
isspace_c
[function]
[call site]
01513
strtol
[call site]
01514
kh_put_refs
[function]
[call site]
01515
hts_realloc_p
[function]
[call site]
01516
hclose
[function]
[call site]
01517
hclose_abruptly
[function]
[call site]
01518
refs_free
[function]
[call site]
01519
sanitise_SQ_lines
[function]
[call site]
01520
kh_get_refs
[function]
[call site]
01521
strcmp
[call site]
01522
__assert_fail
[call site]
01523
hts_log
[function]
[call site]
01524
refs_free
[function]
[call site]
01525
refs_create
[function]
[call site]
01526
refs_from_header
[function]
[call site]
01527
refs2id
[function]
[call site]
01528
kh_get_refs
[function]
[call site]
01529
hts_log
[function]
[call site]
01530
__isoc99_sscanf
[call site]
01531
hts_log
[function]
[call site]
01532
hts_log
[function]
[call site]
01533
__errno_location
[call site]
01534
cram_init_tables
[function]
[call site]
01535
hts_tpool_init
[function]
[call site]
01536
hts_malloc_p
[function]
[call site]
01537
hts_malloc_p
[function]
[call site]
01538
pthread_mutexattr_init
[call site]
01539
pthread_mutexattr_settype
[call site]
01540
pthread_mutex_init
[call site]
01541
pthread_mutexattr_destroy
[call site]
01542
pthread_mutex_lock
[call site]
01543
pthread_attr_init
[call site]
01544
pthread_attr_getstacksize
[call site]
01545
pthread_attr_setstacksize
[call site]
01546
pthread_cond_init
[call site]
01547
pthread_create
[call site]
01548
tpool_worker
[function]
[call site]
01549
pthread_mutex_lock
[call site]
01550
__assert_fail
[call site]
01551
pthread_cond_wait
[call site]
01552
__assert_fail
[call site]
01553
pthread_cond_broadcast
[call site]
01554
pthread_cond_signal
[call site]
01555
pthread_mutex_unlock
[call site]
01556
hts_tpool_add_result
[function]
[call site]
01557
pthread_mutex_lock
[call site]
01558
pthread_cond_signal
[call site]
01559
pthread_mutex_unlock
[call site]
01560
pthread_mutex_unlock
[call site]
01561
hts_tpool_process_shutdown
[function]
[call site]
01562
pthread_mutex_lock
[call site]
01563
hts_tpool_process_shutdown_locked
[function]
[call site]
01564
pthread_mutex_unlock
[call site]
01565
__assert_fail
[call site]
01566
pthread_cond_broadcast
[call site]
01567
pthread_mutex_unlock
[call site]
01568
pthread_mutex_lock
[call site]
01569
hts_tpool_process_destroy
[function]
[call site]
01570
pthread_mutex_unlock
[call site]
01571
pthread_mutex_lock
[call site]
01572
hts_tpool_process_shutdown_locked
[function]
[call site]
01573
pthread_mutex_unlock
[call site]
01574
pthread_mutex_unlock
[call site]
01575
pthread_attr_destroy
[call site]
01576
__errno_location
[call site]
01577
__errno_location
[call site]
01578
strerror
[call site]
01579
pthread_mutex_unlock
[call site]
01580
pthread_join
[call site]
01581
pthread_cond_destroy
[call site]
01582
pthread_mutex_destroy
[call site]
01583
pthread_attr_destroy
[call site]
01584
__errno_location
[call site]
01585
hts_tpool_process_init
[function]
[call site]
01586
pthread_cond_init
[call site]
01587
pthread_cond_init
[call site]
01588
pthread_cond_init
[call site]
01589
pthread_cond_init
[call site]
01590
hts_tpool_process_attach
[function]
[call site]
01591
pthread_mutex_lock
[call site]
01592
__assert_fail
[call site]
01593
pthread_mutex_unlock
[call site]
01594
hts_tpool_size
[function]
[call site]
01595
hts_tpool_process_init
[function]
[call site]
01596
hts_log
[function]
[call site]
01597
__errno_location
[call site]
01598
bgzf_hopen
[function]
[call site]
01599
__errno_location
[call site]
01600
hts_process_opts
[function]
[call site]
01601
hts_parse_opt_list
[function]
[call site]
01602
strncpy
[call site]
01603
hts_opt_add
[function]
[call site]
01604
strdup
[call site]
01605
strchr
[call site]
01606
strcmp
[call site]
01607
strcmp
[call site]
01608
atoi
[call site]
01609
strcmp
[call site]
01610
strcmp
[call site]
01611
atoi
[call site]
01612
strcmp
[call site]
01613
strcmp
[call site]
01614
atoi
[call site]
01615
strcmp
[call site]
01616
strcmp
[call site]
01617
atoi
[call site]
01618
strcmp
[call site]
01619
strcmp
[call site]
01620
atoi
[call site]
01621
strcmp
[call site]
01622
strcmp
[call site]
01623
atoi
[call site]
01624
strcmp
[call site]
01625
strcmp
[call site]
01626
atoi
[call site]
01627
strcmp
[call site]
01628
strcmp
[call site]
01629
atoi
[call site]
01630
strcmp
[call site]
01631
strcmp
[call site]
01632
atoi
[call site]
01633
strcmp
[call site]
01634
strcmp
[call site]
01635
atoi
[call site]
01636
strcmp
[call site]
01637
strcmp
[call site]
01638
atoi
[call site]
01639
strcmp
[call site]
01640
strcmp
[call site]
01641
atoi
[call site]
01642
strcmp
[call site]
01643
strcmp
[call site]
01644
atoi
[call site]
01645
strcmp
[call site]
01646
strcmp
[call site]
01647
atoi
[call site]
01648
strcmp
[call site]
01649
strcmp
[call site]
01650
atoi
[call site]
01651
strcmp
[call site]
01652
strcmp
[call site]
01653
strcmp
[call site]
01654
strcmp
[call site]
01655
strcmp
[call site]
01656
strcmp
[call site]
01657
strcmp
[call site]
01658
strcmp
[call site]
01659
strcmp
[call site]
01660
strcmp
[call site]
01661
strcmp
[call site]
01662
strcmp
[call site]
01663
strcmp
[call site]
01664
strcmp
[call site]
01665
atoi
[call site]
01666
strcmp
[call site]
01667
strcmp
[call site]
01668
atoi
[call site]
01669
strcmp
[call site]
01670
strcmp
[call site]
01671
strtol
[call site]
01672
strcmp
[call site]
01673
strcmp
[call site]
01674
strtol
[call site]
01675
strcmp
[call site]
01676
strcmp
[call site]
01677
strtol
[call site]
01678
strcmp
[call site]
01679
strcmp
[call site]
01680
strcmp
[call site]
01681
strcmp
[call site]
01682
atoi
[call site]
01683
strcmp
[call site]
01684
strcmp
[call site]
01685
atoi
[call site]
01686
strcmp
[call site]
01687
strcmp
[call site]
01688
strtol
[call site]
01689
strcmp
[call site]
01690
strcmp
[call site]
01691
strtol
[call site]
01692
strcmp
[call site]
01693
strcmp
[call site]
01694
strcmp
[call site]
01695
strcmp
[call site]
01696
strcmp
[call site]
01697
strcmp
[call site]
01698
strcmp
[call site]
01699
strcmp
[call site]
01700
strcmp
[call site]
01701
strcmp
[call site]
01702
strcmp
[call site]
01703
strcmp
[call site]
01704
strcmp
[call site]
01705
strcmp
[call site]
01706
strcmp
[call site]
01707
strcmp
[call site]
01708
strcmp
[call site]
01709
strcmp
[call site]
01710
atoi
[call site]
01711
hts_log
[function]
[call site]
01712
hts_opt_apply
[function]
[call site]
01713
strdup
[call site]
01714
hts_set_opt
[function]
[call site]
01715
hts_set_threads
[function]
[call site]
01716
sam_set_threads
[function]
[call site]
01717
hts_tpool_init
[function]
[call site]
01718
sam_set_thread_pool
[function]
[call site]
01719
sam_state_create
[function]
[call site]
01720
calloc
[call site]
01721
pthread_mutex_init
[call site]
01722
pthread_mutex_init
[call site]
01723
pthread_cond_init
[call site]
01724
hts_tpool_size
[function]
[call site]
01725
hts_tpool_process_init
[function]
[call site]
01726
sam_state_destroy
[function]
[call site]
01727
pthread_mutex_lock
[call site]
01728
pthread_cond_signal
[call site]
01729
hts_tpool_wake_dispatch
[function]
[call site]
01730
hts_tpool_wake_dispatch
[function]
[call site]
01731
pthread_mutex_unlock
[call site]
01732
hts_usleep
[function]
[call site]
01733
pthread_mutex_lock
[call site]
01734
pthread_mutex_unlock
[call site]
01735
hts_tpool_dispatch
[function]
[call site]
01736
hts_tpool_dispatch3
[function]
[call site]
01737
sam_format_worker
[function]
[call site]
01738
pthread_mutex_lock
[call site]
01739
pthread_mutex_unlock
[call site]
01740
calloc
[call site]
01741
sam_state_err
[function]
[call site]
01742
pthread_mutex_lock
[call site]
01743
pthread_mutex_unlock
[call site]
01744
sam_format1_append
[function]
[call site]
01745
kputsn_
[function]
[call site]
01746
__errno_location
[call site]
01747
ks_resize
[function]
[call site]
01748
kputc_
[function]
[call site]
01749
kputw
[function]
[call site]
01750
ks_resize
[function]
[call site]
01751
kputuw
[function]
[call site]
01752
ks_resize
[function]
[call site]
01753
ks_resize
[function]
[call site]
01754
kputc_
[function]
[call site]
01755
kputs
[function]
[call site]
01756
kputc_
[function]
[call site]
01757
kputsn_
[function]
[call site]
01758
kputll
[function]
[call site]
01759
ks_resize
[function]
[call site]
01760
kputuw
[function]
[call site]
01761
kputc_
[function]
[call site]
01762
kputw
[function]
[call site]
01763
kputc_
[function]
[call site]
01764
kputw
[function]
[call site]
01765
kputc_
[function]
[call site]
01766
kputc_
[function]
[call site]
01767
kputc_
[function]
[call site]
01768
kputsn_
[function]
[call site]
01769
kputsn_
[function]
[call site]
01770
kputs
[function]
[call site]
01771
kputc_
[function]
[call site]
01772
kputll
[function]
[call site]
01773
kputc_
[function]
[call site]
01774
kputll
[function]
[call site]
01775
kputc_
[function]
[call site]
01776
ks_resize
[function]
[call site]
01777
nibble2base
[function]
[call site]
01778
add33
[function]
[call site]
01779
kputsn_
[function]
[call site]
01780
kputc_
[function]
[call site]
01781
sam_format_aux1
[function]
[call site]
01782
kputsn_
[function]
[call site]
01783
kputc_
[function]
[call site]
01784
kputsn_
[function]
[call site]
01785
kputw
[function]
[call site]
01786
kputsn_
[function]
[call site]
01787
kputw
[function]
[call site]
01788
kputsn_
[function]
[call site]
01789
le_to_u16
[function]
[call site]
01790
kputuw
[function]
[call site]
01791
kputsn_
[function]
[call site]
01792
le_to_i16
[function]
[call site]
01793
le_to_u16
[function]
[call site]
01794
kputw
[function]
[call site]
01795
kputsn_
[function]
[call site]
01796
le_to_u32
[function]
[call site]
01797
kputuw
[function]
[call site]
01798
kputsn_
[function]
[call site]
01799
le_to_i32
[function]
[call site]
01800
le_to_u32
[function]
[call site]
01801
kputw
[function]
[call site]
01802
kputsn_
[function]
[call site]
01803
kputc
[function]
[call site]
01804
le_to_float
[function]
[call site]
01805
le_to_u32
[function]
[call site]
01806
ksprintf
[function]
[call site]
01807
le_to_double
[function]
[call site]
01808
le_to_u64
[function]
[call site]
01809
ksprintf
[function]
[call site]
01810
kputc_
[function]
[call site]
01811
kputc_
[function]
[call site]
01812
kputc_
[function]
[call site]
01813
kputsn
[function]
[call site]
01814
le_to_u32
[function]
[call site]
01815
kputsn_
[function]
[call site]
01816
kputc
[function]
[call site]
01817
ks_expand
[function]
[call site]
01818
__errno_location
[call site]
01819
ks_resize
[function]
[call site]
01820
kputw
[function]
[call site]
01821
ks_expand
[function]
[call site]
01822
kputuw
[function]
[call site]
01823
ks_expand
[function]
[call site]
01824
le_to_i16
[function]
[call site]
01825
kputw
[function]
[call site]
01826
ks_expand
[function]
[call site]
01827
le_to_u16
[function]
[call site]
01828
kputuw
[function]
[call site]
01829
ks_expand
[function]
[call site]
01830
le_to_i32
[function]
[call site]
01831
kputw
[function]
[call site]
01832
ks_expand
[function]
[call site]
01833
le_to_u32
[function]
[call site]
01834
kputuw
[function]
[call site]
01835
ks_expand
[function]
[call site]
01836
le_to_float
[function]
[call site]
01837
kputd
[function]
[call site]
01838
__errno_location
[call site]
01839
hts_log
[function]
[call site]
01840
__errno_location
[call site]
01841
kputsn
[function]
[call site]
01842
hts_log
[function]
[call site]
01843
__errno_location
[call site]
01844
hts_log
[function]
[call site]
01845
__errno_location
[call site]
01846
__errno_location
[call site]
01847
sam_state_err
[function]
[call site]
01848
kputc
[function]
[call site]
01849
pthread_mutex_lock
[call site]
01850
pthread_mutex_unlock
[call site]
01851
hts_tpool_process_flush
[function]
[call site]
01852
pthread_mutex_lock
[call site]
01853
pthread_mutex_unlock
[call site]
01854
hts_tpool_process_empty
[function]
[call site]
01855
hts_usleep
[function]
[call site]
01856
pthread_mutex_lock
[call site]
01857
hts_tpool_process_is_shutdown
[function]
[call site]
01858
pthread_mutex_unlock
[call site]
01859
hts_tpool_process_shutdown
[function]
[call site]
01860
pthread_join
[call site]
01861
hts_tpool_process_destroy
[function]
[call site]
01862
hts_tpool_destroy
[function]
[call site]
01863
pthread_mutex_destroy
[call site]
01864
pthread_mutex_destroy
[call site]
01865
pthread_cond_destroy
[call site]
01866
sam_free_sp_bams
[function]
[call site]
01867
sam_free_sp_bams
[function]
[call site]
01868
bam_hdr_destroy
[function]
[call site]
01869
sam_hdr_destroy
[function]
[call site]
01870
bgzf_thread_pool
[function]
[call site]
01871
calloc
[call site]
01872
hts_tpool_size
[function]
[call site]
01873
hts_tpool_process_init
[function]
[call site]
01874
hts_tpool_process_ref_incr
[function]
[call site]
01875
pthread_mutex_lock
[call site]
01876
pthread_mutex_unlock
[call site]
01877
pool_create
[function]
[call site]
01878
pthread_mutex_init
[call site]
01879
pthread_mutex_init
[call site]
01880
pthread_mutex_init
[call site]
01881
pthread_cond_init
[call site]
01882
pthread_create
[call site]
01883
hts_tpool_destroy
[function]
[call site]
01884
hts_get_bgzfp
[function]
[call site]
01885
bgzf_mt
[function]
[call site]
01886
hts_tpool_init
[function]
[call site]
01887
bgzf_thread_pool
[function]
[call site]
01888
hts_tpool_destroy
[function]
[call site]
01889
hts_set_opt
[function]
[call site]
01890
hts_hfile
[function]
[call site]
01891
bgzf_hfile
[function]
[call site]
01892
cram_hfile
[function]
[call site]
01893
bgzf_hfile
[function]
[call site]
01894
hfile_set_blksize
[function]
[call site]
01895
hts_log
[function]
[call site]
01896
hts_log
[function]
[call site]
01897
hts_set_thread_pool
[function]
[call site]
01898
sam_set_thread_pool
[function]
[call site]
01899
hts_get_bgzfp
[function]
[call site]
01900
bgzf_thread_pool
[function]
[call site]
01901
hts_set_opt
[function]
[call site]
01902
hts_set_cache_size
[function]
[call site]
01903
hts_get_bgzfp
[function]
[call site]
01904
bgzf_set_cache_size
[function]
[call site]
01905
fastq_state_set
[function]
[call site]
01906
fastq_state_init
[function]
[call site]
01907
strcmp
[call site]
01911
kh_init_tag
[function]
[call site]
01912
calloc
[call site]
01913
strlen
[call site]
01914
hts_log
[function]
[call site]
01915
kh_put_tag
[function]
[call site]
01916
kh_resize_tag
[function]
[call site]
01917
__errno_location
[call site]
01918
realloc
[call site]
01919
strncpy
[call site]
01920
strcmp
[call site]
01921
isalpha_c
[function]
[call site]
01922
isalnum_c
[function]
[call site]
01923
strncpy
[call site]
01924
hts_log
[function]
[call site]
01925
regfree
[call site]
01926
regcomp
[call site]
01927
hts_log
[function]
[call site]
01928
fastq_state_set
[function]
[call site]
01929
fastq_state_set
[function]
[call site]
01930
cram_set_option
[function]
[call site]
01931
hts_set_filter_expression
[function]
[call site]
01932
hts_filter_free
[function]
[call site]
01933
regfree
[call site]
01934
hts_filter_init
[function]
[call site]
01935
calloc
[call site]
01936
strlen
[call site]
01937
hts_malloc_ps
[function]
[call site]
01938
hts_add_sat2
[function]
[call site]
01939
hts_prod_sat2
[function]
[call site]
01940
hts_malloc
[function]
[call site]
01941
cram_set_voption
[function]
[call site]
01942
hts_set_opt
[function]
[call site]
01943
hts_opt_free
[function]
[call site]
01944
hts_opt_free
[function]
[call site]
01945
hclose_abruptly
[function]
[call site]
01946
hts_log
[function]
[call site]
01947
hclose_abruptly
[function]
[call site]
01948
hclose
[function]
[call site]
01949
abort
[call site]
01950
hts_close
[function]
[call site]
01951
__errno_location
[call site]
01952
bgzf_close
[function]
[call site]
01953
cram_eof
[function]
[call site]
01954
hts_log
[function]
[call site]
01955
cram_close
[function]
[call site]
01956
cram_update_curr_slice
[function]
[call site]
01957
cram_flush_container_mt
[function]
[call site]
01958
pthread_mutex_lock
[call site]
01959
reset_metrics
[function]
[call site]
01960
pthread_mutex_unlock
[call site]
01961
hts_tpool_process_flush
[function]
[call site]
01962
pthread_mutex_lock
[call site]
01963
pthread_mutex_unlock
[call site]
01964
cram_flush_container
[function]
[call site]
01965
cram_encode_container
[function]
[call site]
01966
pthread_mutex_lock
[call site]
01967
hts_log
[function]
[call site]
01968
hts_log
[function]
[call site]
01969
pthread_mutex_lock
[call site]
01970
pthread_mutex_unlock
[call site]
01971
cram_get_ref
[function]
[call site]
01972
pthread_mutex_lock
[call site]
01973
hts_log
[function]
[call site]
01974
pthread_mutex_unlock
[call site]
01975
pthread_mutex_lock
[call site]
01976
hts_log
[function]
[call site]
01977
cram_populate_ref
[function]
[call site]
01978
getenv
[call site]
01979
getenv
[call site]
01980
hts_log
[function]
[call site]
01981
sam_hrecs_find_type_id
[function]
[call site]
01982
sam_hrecs_find_key
[function]
[call site]
01983
hts_log
[function]
[call site]
01984
expand_cache_path
[function]
[call site]
01985
strchr
[call site]
01986
strncpy
[call site]
01987
strlen
[call site]
01988
strcpy
[call site]
01989
strtol
[call site]
01990
strlen
[call site]
01991
strncpy
[call site]
01992
strlen
[call site]
01993
strcpy
[call site]
01994
strlen
[call site]
01995
strcpy
[call site]
01996
stat
[call site]
01997
stat
[call site]
01998
bgzf_open
[function]
[call site]
01999
string_dup
[function]
[call site]
02000
bgzf_close
[function]
[call site]
02001
open_path_mfile
[function]
[call site]
02002
getenv
[call site]
02003
tokenise_search_path
[function]
[call site]
02004
strlen
[call site]
02005
strncmp
[call site]
02006
strncmp
[call site]
02007
strncmp
[call site]
02008
strncmp
[call site]
02009
strncmp
[call site]
02010
strncmp
[call site]
02011
strncmp
[call site]
02012
strncmp
[call site]
02013
strncmp
[call site]
02014
strncmp
[call site]
02015
find_file_url
[function]
[call site]
02016
expand_path
[function]
[call site]
02017
strlen
[call site]
02018
strlen
[call site]
02019
hts_log
[function]
[call site]
02020
strchr
[call site]
02021
strtol
[call site]
02022
hopen
[function]
[call site]
02023
__errno_location
[call site]
02024
__errno_location
[call site]
02025
strerror
[call site]
02026
hts_log
[function]
[call site]
02027
mfcreate
[function]
[call site]
02028
hread
[function]
[call site]
02029
mfwrite
[function]
[call site]
02030
realloc
[call site]
02031
hclose_abruptly
[function]
[call site]
02032
hclose
[function]
[call site]
02033
__errno_location
[call site]
02034
strerror
[call site]
02035
hts_log
[function]
[call site]
02036
mrewind
[function]
[call site]
02037
mfdestroy
[function]
[call site]
02038
strncmp
[call site]
02039
hisremote
[function]
[call site]
02040
find_file_url
[function]
[call site]
02041
find_file_dir
[function]
[call site]
02042
expand_path
[function]
[call site]
02043
is_file
[function]
[call site]
02044
stat
[call site]
02045
mfopen
[function]
[call site]
02046
fopen
[call site]
02047
mfreopen
[function]
[call site]
02048
strchr
[call site]
02049
strchr
[call site]
02050
strchr
[call site]
02051
strchr
[call site]
02052
strchr
[call site]
02053
strchr
[call site]
02054
strchr
[call site]
02055
mfcreate
[function]
[call site]
02056
mfmmap
[function]
[call site]
02057
mfload
[function]
[call site]
02061
stat
[call site]
02062
realloc
[call site]
02063
fread
[call site]
02064
feof
[call site]
02065
fseek
[call site]
02066
mfcreate
[function]
[call site]
02067
hts_log
[function]
[call site]
02068
fseek
[call site]
02069
strlen
[call site]
02070
strcpy
[call site]
02071
strrchr
[call site]
02072
find_file_dir
[function]
[call site]
02073
mfsteal
[function]
[call site]
02074
mfdetach
[function]
[call site]
02075
mfflush
[function]
[call site]
02076
fclose
[call site]
02077
mfdestroy
[function]
[call site]
02078
sam_hrecs_find_key
[function]
[call site]
02079
strstr
[call site]
02080
strncmp
[call site]
02081
hts_log
[function]
[call site]
02082
strncmp
[call site]
02083
bgzf_close
[function]
[call site]
02084
refs_load_fai
[function]
[call site]
02085
sanitise_SQ_lines
[function]
[call site]
02086
bgzf_close
[function]
[call site]
02087
refs2id
[function]
[call site]
02088
expand_cache_path
[function]
[call site]
02089
hts_log
[function]
[call site]
02090
mkdir_prefix
[function]
[call site]
02091
strrchr
[call site]
02092
is_directory
[function]
[call site]
02093
stat
[call site]
02094
mkdir
[call site]
02095
chmod
[call site]
02096
mkdir_prefix
[function]
[call site]
02097
mkdir
[call site]
02098
chmod
[call site]
02099
hts_open_tmpfile
[function]
[call site]
02100
getpid
[call site]
02101
time
[call site]
02102
clock
[call site]
02103
ks_clear
[function]
[call site]
02104
ksprintf
[function]
[call site]
02105
hopen
[function]
[call site]
02106
__errno_location
[call site]
02107
perror
[call site]
02108
hts_md5_init
[function]
[call site]
02109
hts_md5_reset
[function]
[call site]
02110
hclose_abruptly
[function]
[call site]
02111
unlink
[call site]
02112
hts_md5_update
[function]
[call site]
02113
body
[function]
[call site]
02114
body
[function]
[call site]
02115
hts_md5_final
[function]
[call site]
02116
body
[function]
[call site]
02117
body
[function]
[call site]
02118
hts_md5_destroy
[function]
[call site]
02119
hts_md5_hex
[function]
[call site]
02120
strncmp
[call site]
02121
hts_log
[function]
[call site]
02122
hclose_abruptly
[function]
[call site]
02123
unlink
[call site]
02124
hwrite
[function]
[call site]
02125
hclose
[function]
[call site]
02126
chmod
[call site]
02127
rename
[call site]
02128
__errno_location
[call site]
02129
strerror
[call site]
02130
hts_log
[function]
[call site]
02131
unlink
[call site]
02132
hts_log
[function]
[call site]
02133
hts_log
[function]
[call site]
02134
pthread_mutex_unlock
[call site]
02135
pthread_mutex_unlock
[call site]
02136
cram_ref_incr_locked
[function]
[call site]
02137
cram_ref_incr_locked
[function]
[call site]
02138
cram_ref_load
[function]
[call site]
02139
__assert_fail
[call site]
02140
__assert_fail
[call site]
02141
ref_entry_free_seq
[function]
[call site]
02142
strcmp
[call site]
02143
bgzf_close
[function]
[call site]
02144
bgzf_open_ref
[function]
[call site]
02145
load_ref_portion
[function]
[call site]
02146
bgzf_useek
[function]
[call site]
02147
hseek
[function]
[call site]
02148
bgzf_read_block
[function]
[call site]
02149
bgzf_seek_common
[function]
[call site]
02150
pthread_mutex_lock
[call site]
02151
pthread_cond_signal
[call site]
02152
hts_tpool_wake_dispatch
[function]
[call site]
02153
pthread_cond_wait
[call site]
02154
pthread_cond_signal
[call site]
02155
abort
[call site]
02156
__errno_location
[call site]
02157
pthread_mutex_unlock
[call site]
02158
pthread_mutex_unlock
[call site]
02159
hseek
[function]
[call site]
02160
bgzf_read_block
[function]
[call site]
02161
__assert_fail
[call site]
02162
perror
[call site]
02163
bgzf_read
[function]
[call site]
02164
__assert_fail
[call site]
02165
bgzf_read_block
[function]
[call site]
02166
hts_log
[function]
[call site]
02167
bgzf_htell
[function]
[call site]
02168
hts_log
[function]
[call site]
02169
bgzf_htell
[function]
[call site]
02170
perror
[call site]
02171
isspace_c
[function]
[call site]
02172
isspace_c
[function]
[call site]
02173
isspace_c
[function]
[call site]
02174
hts_log
[function]
[call site]
02175
toupper_c
[function]
[call site]
02176
toupper
[call site]
02177
pthread_mutex_unlock
[call site]
02178
pthread_mutex_unlock
[call site]
02179
cram_ref_incr_locked
[function]
[call site]
02180
pthread_mutex_unlock
[call site]
02181
pthread_mutex_unlock
[call site]
02182
pthread_mutex_unlock
[call site]
02183
pthread_mutex_unlock
[call site]
02184
strcmp
[call site]
02185
bgzf_close
[function]
[call site]
02186
bgzf_open_ref
[function]
[call site]
02187
pthread_mutex_unlock
[call site]
02188
pthread_mutex_unlock
[call site]
02189
load_ref_portion
[function]
[call site]
02190
pthread_mutex_unlock
[call site]
02191
pthread_mutex_unlock
[call site]
02192
pthread_mutex_unlock
[call site]
02193
pthread_mutex_unlock
[call site]
02194
hts_log
[function]
[call site]
02195
hts_log
[function]
[call site]
02196
pthread_mutex_lock
[call site]
02197
pthread_mutex_unlock
[call site]
02198
hts_log
[function]
[call site]
02199
hts_log
[function]
[call site]
02200
hts_log
[function]
[call site]
02201
hts_log
[function]
[call site]
02202
pthread_mutex_lock
[call site]
02203
pthread_mutex_unlock
[call site]
02204
validate_md5
[function]
[call site]
02205
sam_hrecs_find_type_id
[function]
[call site]
02206
sam_hrecs_find_key
[function]
[call site]
02207
hts_md5_init
[function]
[call site]
02208
hts_md5_update
[function]
[call site]
02209
hts_md5_final
[function]
[call site]
02210
hts_md5_destroy
[function]
[call site]
02211
hts_md5_hex
[function]
[call site]
02212
strcmp
[call site]
02213
hts_log
[function]
[call site]
02214
hts_log
[function]
[call site]
02215
cram_ref_incr
[function]
[call site]
02216
pthread_mutex_lock
[call site]
02217
cram_ref_incr_locked
[function]
[call site]
02218
pthread_mutex_unlock
[call site]
02219
cram_get_ref
[function]
[call site]
02220
validate_md5
[function]
[call site]
02221
hts_log
[function]
[call site]
02222
__assert_fail
[call site]
02223
lossy_read_names
[function]
[call site]
02224
kh_init_m_s2u64
[function]
[call site]
02225
calloc
[call site]
02226
expected_template_count
[function]
[call site]
02227
bam_aux_get
[function]
[call site]
02228
bam_aux_first
[function]
[call site]
02229
__errno_location
[call site]
02230
skip_aux
[function]
[call site]
02231
aux_type2size
[function]
[call site]
02232
memchr
[call site]
02233
aux_type2size
[function]
[call site]
02234
le_to_u32
[function]
[call site]
02235
bam_aux_next
[function]
[call site]
02236
skip_aux
[function]
[call site]
02237
__errno_location
[call site]
02238
hts_log
[function]
[call site]
02239
__errno_location
[call site]
02240
hts_log
[function]
[call site]
02241
__errno_location
[call site]
02242
bam_data_end
[function]
[call site]
02243
bam_aux2i_end
[function]
[call site]
02244
__errno_location
[call site]
02245
__errno_location
[call site]
02246
__errno_location
[call site]
02247
le_to_i16
[function]
[call site]
02248
le_to_u16
[function]
[call site]
02249
__errno_location
[call site]
02250
le_to_u16
[function]
[call site]
02251
__errno_location
[call site]
02252
le_to_i32
[function]
[call site]
02253
le_to_u32
[function]
[call site]
02254
__errno_location
[call site]
02255
le_to_u32
[function]
[call site]
02256
__errno_location
[call site]
02257
bam_aux_get
[function]
[call site]
02258
kh_put_m_s2u64
[function]
[call site]
02259
kh_resize_m_s2u64
[function]
[call site]
02260
__errno_location
[call site]
02261
realloc
[call site]
02262
__ac_FNV1a_hash_string
[function]
[call site]
02263
strcmp
[call site]
02264
kh_get_m_s2u64
[function]
[call site]
02265
kh_destroy_m_s2u64
[function]
[call site]
02266
cram_generate_reference
[function]
[call site]
02267
extend_ref
[function]
[call site]
02268
realloc
[call site]
02269
hts_realloc_p
[function]
[call site]
02270
hts_log
[function]
[call site]
02271
cram_add_to_ref
[function]
[call site]
02272
bam_aux_get
[function]
[call site]
02273
cram_add_to_ref_MD
[function]
[call site]
02274
bam_cigar2rlen
[function]
[call site]
02275
extend_ref
[function]
[call site]
02276
__ctype_b_loc
[call site]
02277
hts_str2uint
[function]
[call site]
02278
extend_ref
[function]
[call site]
02279
next_cigar_op
[function]
[call site]
02280
hts_log
[function]
[call site]
02281
__ctype_b_loc
[call site]
02282
extend_ref
[function]
[call site]
02283
next_cigar_op
[function]
[call site]
02284
hts_log
[function]
[call site]
02285
extend_ref
[function]
[call site]
02286
next_cigar_op
[function]
[call site]
02287
hts_log
[function]
[call site]
02288
extend_ref
[function]
[call site]
02289
extend_ref
[function]
[call site]
02290
hts_log
[function]
[call site]
02291
hts_log
[function]
[call site]
02292
pthread_mutex_lock
[call site]
02293
pthread_mutex_unlock
[call site]
02294
pthread_mutex_lock
[call site]
02295
pthread_mutex_unlock
[call site]
02296
cram_ref_decr
[function]
[call site]
02297
pthread_mutex_lock
[call site]
02298
cram_ref_decr_locked
[function]
[call site]
02299
__assert_fail
[call site]
02300
ref_entry_free_seq
[function]
[call site]
02301
pthread_mutex_unlock
[call site]
02302
cram_get_ref
[function]
[call site]
02303
hts_log
[function]
[call site]
02304
validate_md5
[function]
[call site]
02305
process_one_read
[function]
[call site]
02306
bam_aux_get
[function]
[call site]
02307
bam_aux_get
[function]
[call site]
02308
cram_stats_add
[function]
[call site]
02309
kh_init_m_i2i
[function]
[call site]
02310
kh_put_m_i2i
[function]
[call site]
02311
kh_resize_m_i2i
[function]
[call site]
02312
cram_stats_add
[function]
[call site]
02313
cram_stats_add
[function]
[call site]
02314
block_grow
[function]
[call site]
02315
block_resize
[function]
[call site]
02316
block_resize_exact
[function]
[call site]
02317
realloc
[call site]
02318
block_grow
[function]
[call site]
02319
nibble2base
[function]
[call site]
02320
hts_log
[function]
[call site]
02321
hts_realloc_p
[function]
[call site]
02322
hts_log
[function]
[call site]
02323
kputuw
[function]
[call site]
02324
ks_resize
[function]
[call site]
02325
ks_resize
[function]
[call site]
02326
kputc
[function]
[call site]
02327
ks_resize
[function]
[call site]
02328
cram_add_substitution
[function]
[call site]
02329
cram_stats_add
[function]
[call site]
02330
cram_stats_add
[function]
[call site]
02331
cram_stats_add
[function]
[call site]
02332
block_append_char
[function]
[call site]
02333
block_grow
[function]
[call site]
02334
cram_add_feature
[function]
[call site]
02335
hts_realloc_p
[function]
[call site]
02336
cram_stats_add
[function]
[call site]
02337
cram_stats_add
[function]
[call site]
02338
cram_stats_add
[function]
[call site]
02339
cram_add_bases
[function]
[call site]
02340
cram_add_feature
[function]
[call site]
02341
cram_add_base
[function]
[call site]
02342
cram_stats_add
[function]
[call site]
02343
cram_stats_add
[function]
[call site]
02344
block_append_char
[function]
[call site]
02345
cram_add_feature
[function]
[call site]
02346
cram_add_base
[function]
[call site]
02347
kputuw
[function]
[call site]
02348
kputc_
[function]
[call site]
02349
ks_resize
[function]
[call site]
02350
kputsn
[function]
[call site]
02351
ks_resize
[function]
[call site]
02352
cram_add_deletion
[function]
[call site]
02353
cram_stats_add
[function]
[call site]
02354
cram_add_feature
[function]
[call site]
02355
cram_add_skip
[function]
[call site]
02356
cram_stats_add
[function]
[call site]
02357
cram_add_feature
[function]
[call site]
02358
cram_add_insertion
[function]
[call site]
02359
cram_stats_add
[function]
[call site]
02360
block_append
[function]
[call site]
02361
block_grow
[function]
[call site]
02362
block_append_char
[function]
[call site]
02363
block_append_char
[function]
[call site]
02364
cram_add_feature
[function]
[call site]
02365
cram_add_quality
[function]
[call site]
02366
cram_stats_add
[function]
[call site]
02367
block_append_char
[function]
[call site]
02368
cram_add_feature
[function]
[call site]
02369
cram_add_softclip
[function]
[call site]
02370
block_append
[function]
[call site]
02371
block_append_char
[function]
[call site]
02372
block_append
[function]
[call site]
02373
block_append_char
[function]
[call site]
02374
block_append_char
[function]
[call site]
02375
cram_add_feature
[function]
[call site]
02376
cram_add_quality
[function]
[call site]
02377
cram_add_quality
[function]
[call site]
02378
cram_add_hardclip
[function]
[call site]
02379
cram_stats_add
[function]
[call site]
02380
cram_add_feature
[function]
[call site]
02381
cram_add_pad
[function]
[call site]
02382
cram_stats_add
[function]
[call site]
02383
cram_add_feature
[function]
[call site]
02384
hts_log
[function]
[call site]
02385
hts_log
[function]
[call site]
02386
cram_stats_add
[function]
[call site]
02387
kputuw
[function]
[call site]
02388
cram_stats_add
[function]
[call site]
02389
cram_encode_aux
[function]
[call site]
02390
bam_data_end
[function]
[call site]
02391
hts_malloc_ps
[function]
[call site]
02392
hts_add_sat2
[function]
[call site]
02393
hts_prod_sat2
[function]
[call site]
02394
hts_malloc
[function]
[call site]
02395
hts_log
[function]
[call site]
02396
sam_hrecs_find_rg
[function]
[call site]
02397
kh_get_m_s2i
[function]
[call site]
02398
hts_log
[function]
[call site]
02399
strncasecmp
[call site]
02400
hts_log
[function]
[call site]
02401
bam_aux2i_end
[function]
[call site]
02402
hts_log
[function]
[call site]
02403
block_append
[function]
[call site]
02404
kh_put_m_tagmap
[function]
[call site]
02405
kh_resize_m_tagmap
[function]
[call site]
02406
realloc
[call site]
02407
pthread_mutex_lock
[call site]
02408
kh_put_m_metrics
[function]
[call site]
02409
kh_resize_m_metrics
[function]
[call site]
02410
realloc
[call site]
02411
pthread_mutex_unlock
[call site]
02412
cram_new_metrics
[function]
[call site]
02413
kh_del_m_metrics
[function]
[call site]
02414
pthread_mutex_unlock
[call site]
02415
pthread_mutex_unlock
[call site]
02416
calloc
[call site]
02417
cram_encoder_init
[function]
[call site]
02418
cram_encoding2str
[function]
[call site]
02419
hts_log
[function]
[call site]
02420
cram_encoding2str
[function]
[call site]
02421
hts_log
[function]
[call site]
02422
abort
[call site]
02423
cram_stats_add
[function]
[call site]
02424
cram_stats_encoding
[function]
[call site]
02425
hts_realloc_p
[function]
[call site]
02426
hts_realloc_p
[function]
[call site]
02427
hts_realloc_p
[function]
[call site]
02428
hts_realloc_p
[function]
[call site]
02429
__assert_fail
[call site]
02430
cram_encoder_init
[function]
[call site]
02431
cram_stats_add
[function]
[call site]
02432
cram_stats_encoding
[function]
[call site]
02433
cram_encoder_init
[function]
[call site]
02434
cram_stats_add
[function]
[call site]
02435
cram_stats_encoding
[function]
[call site]
02436
cram_encoder_init
[function]
[call site]
02437
cram_encoder_init
[function]
[call site]
02438
hts_log
[function]
[call site]
02439
pthread_mutex_lock
[call site]
02440
pthread_mutex_unlock
[call site]
02441
cram_new_block
[function]
[call site]
02442
block_append_char
[function]
[call site]
02443
cram_new_block
[function]
[call site]
02444
block_append
[function]
[call site]
02445
cram_new_block
[function]
[call site]
02446
block_append
[function]
[call site]
02447
cram_new_block
[function]
[call site]
02448
block_append
[function]
[call site]
02449
cram_new_block
[function]
[call site]
02450
hts_log
[function]
[call site]
02451
cram_new_block
[function]
[call site]
02452
hts_log
[function]
[call site]
02453
hts_log
[function]
[call site]
02454
block_append_char
[function]
[call site]
02455
kh_put_m_s2i
[function]
[call site]
02456
kh_resize_m_s2i
[function]
[call site]
02457
__ac_FNV1a_hash_string
[function]
[call site]
02458
string_ndup
[function]
[call site]
02459
cram_stats_add
[function]
[call site]
02460
sam_hrecs_find_rg
[function]
[call site]
02461
cram_stats_add
[function]
[call site]
02462
block_grow
[function]
[call site]
02463
block_grow
[function]
[call site]
02464
cram_stats_add
[function]
[call site]
02465
kh_put_m_s2i
[function]
[call site]
02466
string_ndup
[function]
[call site]
02467
cram_stats_add
[function]
[call site]
02468
cram_stats_add
[function]
[call site]
02469
cram_stats_del
[function]
[call site]
02470
__assert_fail
[call site]
02471
kh_get_m_i2i
[function]
[call site]
02472
kh_del_m_i2i
[function]
[call site]
02473
hts_log
[function]
[call site]
02474
cram_stats_del
[function]
[call site]
02475
cram_stats_del
[function]
[call site]
02476
cram_stats_del
[function]
[call site]
02477
cram_stats_add
[function]
[call site]
02478
cram_stats_del
[function]
[call site]
02479
cram_stats_add
[function]
[call site]
02480
cram_stats_add
[function]
[call site]
02481
cram_stats_add
[function]
[call site]
02482
cram_stats_add
[function]
[call site]
02483
cram_stats_add
[function]
[call site]
02484
cram_stats_add
[function]
[call site]
02485
cram_stats_add
[function]
[call site]
02486
cram_stats_add
[function]
[call site]
02487
add_read_names
[function]
[call site]
02488
block_append
[function]
[call site]
02489
cram_stats_add
[function]
[call site]
02490
hts_prod_sat2
[function]
[call site]
02491
hts_calloc
[function]
[call site]
02492
__assert_fail
[call site]
02493
cram_ref_decr
[function]
[call site]
02494
pthread_mutex_lock
[call site]
02495
pthread_mutex_unlock
[call site]
02496
cram_stats_encoding
[function]
[call site]
02497
pthread_mutex_lock
[call site]
02498
pthread_mutex_unlock
[call site]
02499
hts_log
[function]
[call site]
02500
hts_md5_init
[function]
[call site]
02501
hts_md5_update
[function]
[call site]
02502
hts_md5_final
[function]
[call site]
02503
hts_md5_destroy
[function]
[call site]
02504
cram_stats_encoding
[function]
[call site]
02505
cram_encoder_init
[function]
[call site]
02506
cram_stats_encoding
[function]
[call site]
02507
cram_encoder_init
[function]
[call site]
02508
cram_stats_encoding
[function]
[call site]
02509
cram_encoder_init
[function]
[call site]
02510
cram_encoder_init
[function]
[call site]
02511
cram_encoder_init
[function]
[call site]
02512
cram_stats_encoding
[function]
[call site]
02513
cram_encoder_init
[function]
[call site]
02514
cram_stats_encoding
[function]
[call site]
02515
cram_encoder_init
[function]
[call site]
02516
cram_stats_encoding
[function]
[call site]
02517
cram_encoder_init
[function]
[call site]
02518
cram_stats_encoding
[function]
[call site]
02519
cram_encoder_init
[function]
[call site]
02520
cram_stats_encoding
[function]
[call site]
02521
cram_encoder_init
[function]
[call site]
02522
cram_stats_encoding
[function]
[call site]
02523
cram_encoder_init
[function]
[call site]
02524
cram_stats_encoding
[function]
[call site]
02525
cram_encoder_init
[function]
[call site]
02526
cram_stats_encoding
[function]
[call site]
02527
cram_encoder_init
[function]
[call site]
02528
cram_stats_encoding
[function]
[call site]
02529
cram_encoder_init
[function]
[call site]
02530
cram_stats_encoding
[function]
[call site]
02531
cram_encoder_init
[function]
[call site]
02532
cram_stats_encoding
[function]
[call site]
02533
cram_encoder_init
[function]
[call site]
02534
cram_stats_encoding
[function]
[call site]
02535
cram_encoder_init
[function]
[call site]
02536
cram_stats_encoding
[function]
[call site]
02537
cram_encoder_init
[function]
[call site]
02538
cram_encoder_init
[function]
[call site]
02539
cram_stats_encoding
[function]
[call site]
02540
cram_encoder_init
[function]
[call site]
02541
cram_stats_encoding
[function]
[call site]
02542
cram_encoder_init
[function]
[call site]
02543
cram_stats_encoding
[function]
[call site]
02544
cram_encoder_init
[function]
[call site]
02545
cram_stats_encoding
[function]
[call site]
02546
cram_encoder_init
[function]
[call site]
02547
cram_stats_encoding
[function]
[call site]
02548
cram_encoder_init
[function]
[call site]
02549
cram_stats_encoding
[function]
[call site]
02550
cram_encoder_init
[function]
[call site]
02551
cram_stats_encoding
[function]
[call site]
02552
cram_encoder_init
[function]
[call site]
02553
cram_stats_encoding
[function]
[call site]
02554
cram_encoder_init
[function]
[call site]
02555
cram_encoder_init
[function]
[call site]
02556
cram_encoder_init
[function]
[call site]
02557
cram_encoder_init
[function]
[call site]
02558
cram_encoder_init
[function]
[call site]
02559
hts_log
[function]
[call site]
02560
cram_encode_slice
[function]
[call site]
02561
hts_prod_sat2
[function]
[call site]
02562
hts_calloc_ps
[function]
[call site]
02563
hts_add_sat2
[function]
[call site]
02564
hts_calloc
[function]
[call site]
02565
hts_malloc_p
[function]
[call site]
02566
cram_new_block
[function]
[call site]
02567
cram_new_block
[function]
[call site]
02568
cram_new_block
[function]
[call site]
02569
block_append
[function]
[call site]
02570
cram_allocate_block
[function]
[call site]
02571
cram_new_block
[function]
[call site]
02572
cram_new_block
[function]
[call site]
02573
cram_allocate_block
[function]
[call site]
02574
cram_allocate_block
[function]
[call site]
02575
cram_encode_slice_read
[function]
[call site]
02576
hts_log
[function]
[call site]
02577
cram_free_block
[function]
[call site]
02578
cram_free_block
[function]
[call site]
02579
cram_free_block
[function]
[call site]
02580
cram_free_block
[function]
[call site]
02581
cram_compress_slice
[function]
[call site]
02582
cram_compress_block2
[function]
[call site]
02583
cram_compress_block3
[function]
[call site]
02584
pthread_mutex_lock
[call site]
02585
pthread_mutex_unlock
[call site]
02586
cram_compress_by_method
[function]
[call site]
02587
zlib_mem_deflate
[function]
[call site]
02588
deflateInit2_
[call site]
02589
hts_log
[function]
[call site]
02590
hts_log
[function]
[call site]
02591
deflate
[call site]
02592
hts_log
[function]
[call site]
02593
deflate
[call site]
02594
hts_log
[function]
[call site]
02595
deflateEnd
[call site]
02596
hts_log
[function]
[call site]
02597
BZ2_bzBuffToBuffCompress
[call site]
02598
fqz_compress
[function]
[call site]
02599
compress_block_fqz2f
[function]
[call site]
02600
fqz_pick_parameters
[function]
[call site]
02601
calloc
[call site]
02602
fqz_qual_stats
[function]
[call site]
02603
calloc
[call site]
02604
memcmp
[call site]
02605
fast_log
[function]
[call site]
02606
fast_log
[function]
[call site]
02607
fast_log
[function]
[call site]
02608
fast_log
[function]
[call site]
02609
fast_log
[function]
[call site]
02610
fast_log
[function]
[call site]
02611
fast_log
[function]
[call site]
02612
log
[call site]
02613
log
[call site]
02614
log
[call site]
02615
log
[call site]
02616
log
[call site]
02617
log
[call site]
02618
log
[call site]
02619
log
[call site]
02620
log
[call site]
02621
var_put_u32
[function]
[call site]
02622
var_put_u32_safe
[function]
[call site]
02623
fqz_store_parameters
[function]
[call site]
02624
store_array
[function]
[call site]
02625
fqz_store_parameters1
[function]
[call site]
02626
store_array
[function]
[call site]
02627
store_array
[function]
[call site]
02628
store_array
[function]
[call site]
02629
fqz_create_models
[function]
[call site]
02630
RC_SetOutput
[function]
[call site]
02631
RC_SetOutputEnd
[function]
[call site]
02632
RC_StartEncode
[function]
[call site]
02633
compress_new_read
[function]
[call site]
02634
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02635
RC_Encode
[function]
[call site]
02636
RC_ShiftLowCheck
[function]
[call site]
02637
SIMPLE_MODEL256_normalize
[function]
[call site]
02638
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02639
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02640
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02641
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02642
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02643
SIMPLE_MODEL2_normalize
[function]
[call site]
02644
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02645
memcmp
[call site]
02646
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02647
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02648
mm_prefetch
[function]
[call site]
02649
fqz_update_ctx
[function]
[call site]
02650
mm_prefetch
[function]
[call site]
02651
fqz_update_ctx
[function]
[call site]
02652
mm_prefetch
[function]
[call site]
02653
fqz_update_ctx
[function]
[call site]
02654
mm_prefetch
[function]
[call site]
02655
fqz_update_ctx
[function]
[call site]
02656
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02657
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02658
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02659
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02660
mm_prefetch
[function]
[call site]
02661
fqz_update_ctx
[function]
[call site]
02662
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02663
RC_FinishEncode
[function]
[call site]
02664
RC_ShiftLowCheck
[function]
[call site]
02665
RC_OutSize
[function]
[call site]
02666
fqz_destroy_models
[function]
[call site]
02667
fqz_free_parameters
[function]
[call site]
02668
lzma_mem_deflate
[function]
[call site]
02669
lzma_stream_buffer_bound
[call site]
02670
lzma_easy_buffer_encode
[call site]
02671
rans_compress
[function]
[call site]
02672
rans_compress_O1
[function]
[call site]
02673
rans_compress_O0
[function]
[call site]
02674
hist8
[function]
[call site]
02675
htscodecs_tls_calloc
[function]
[call site]
02676
htscodecs_tls_free
[function]
[call site]
02677
__assert_fail
[call site]
02678
RansEncSymbolInit
[function]
[call site]
02679
__assert_fail
[call site]
02680
__assert_fail
[call site]
02681
RansEncInit
[function]
[call site]
02682
RansEncInit
[function]
[call site]
02683
RansEncInit
[function]
[call site]
02684
RansEncInit
[function]
[call site]
02685
RansEncPutSymbol
[function]
[call site]
02686
RansEncPutSymbol
[function]
[call site]
02687
RansEncPutSymbol
[function]
[call site]
02688
RansEncPutSymbol
[function]
[call site]
02689
RansEncPutSymbol
[function]
[call site]
02690
RansEncPutSymbol
[function]
[call site]
02691
RansEncPutSymbol
[function]
[call site]
02692
RansEncFlush
[function]
[call site]
02693
RansEncFlush
[function]
[call site]
02694
RansEncFlush
[function]
[call site]
02695
RansEncFlush
[function]
[call site]
02696
htscodecs_tls_alloc
[function]
[call site]
02697
hist1_4
[function]
[call site]
02698
htscodecs_tls_calloc
[function]
[call site]
02699
htscodecs_tls_free
[function]
[call site]
02700
RansEncSymbolInit
[function]
[call site]
02701
__assert_fail
[call site]
02702
RansEncInit
[function]
[call site]
02703
RansEncInit
[function]
[call site]
02704
RansEncInit
[function]
[call site]
02705
RansEncInit
[function]
[call site]
02706
RansEncPutSymbol
[function]
[call site]
02707
RansEncPutSymbol4
[function]
[call site]
02708
__assert_fail
[call site]
02709
__assert_fail
[call site]
02710
__assert_fail
[call site]
02711
__assert_fail
[call site]
02712
RansEncPutSymbol
[function]
[call site]
02713
RansEncPutSymbol
[function]
[call site]
02714
RansEncPutSymbol
[function]
[call site]
02715
RansEncPutSymbol
[function]
[call site]
02716
RansEncFlush
[function]
[call site]
02717
RansEncFlush
[function]
[call site]
02718
RansEncFlush
[function]
[call site]
02719
RansEncFlush
[function]
[call site]
02720
htscodecs_tls_free
[function]
[call site]
02721
rans_compress_O0
[function]
[call site]
02722
rans_compress_4x16
[function]
[call site]
02723
rans_compress_to_4x16
[function]
[call site]
02724
rans_compress_bound_4x16
[function]
[call site]
02725
var_put_u32
[function]
[call site]
02726
rans_compress_to_4x16
[function]
[call site]
02727
realloc
[call site]
02728
var_put_u32
[function]
[call site]
02729
var_put_u32
[function]
[call site]
02730
var_put_u32
[function]
[call site]
02731
hts_pack
[function]
[call site]
02732
var_put_u32
[function]
[call site]
02733
hts_rle_encode
[function]
[call site]
02734
rle_find_syms
[function]
[call site]
02735
var_put_u32
[function]
[call site]
02736
var_put_u32
[function]
[call site]
02737
var_put_u32
[function]
[call site]
02738
rans_enc_func
[function]
[call site]
02739
pthread_once
[call site]
02740
htscodecs_tls_cpu_init
[function]
[call site]
02741
strerror
[call site]
02742
fprintf
[call site]
02743
fprintf
[call site]
02744
var_put_u32
[function]
[call site]
02745
var_put_u32
[function]
[call site]
02746
var_put_u32
[function]
[call site]
02747
rans_enc_func
[function]
[call site]
02748
arith_compress_to
[function]
[call site]
02749
arith_compress_bound
[function]
[call site]
02750
var_put_u32
[function]
[call site]
02751
var_put_u32
[function]
[call site]
02752
arith_compress_to
[function]
[call site]
02753
arith_compress_to
[function]
[call site]
02754
var_put_u32
[function]
[call site]
02755
var_put_u32
[function]
[call site]
02756
hts_pack
[function]
[call site]
02757
var_put_u32
[function]
[call site]
02758
BZ2_bzBuffToBuffCompress
[call site]
02759
arith_compress_O0_RLE
[function]
[call site]
02760
arith_compress_bound
[function]
[call site]
02761
SIMPLE_MODEL256_init
[function]
[call site]
02762
htscodecs_tls_alloc
[function]
[call site]
02763
SIMPLE_MODEL258_init
[function]
[call site]
02764
RC_SetOutput
[function]
[call site]
02765
RC_SetOutputEnd
[function]
[call site]
02766
RC_StartEncode
[function]
[call site]
02767
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02768
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02769
SIMPLE_MODEL258_normalize
[function]
[call site]
02770
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02771
RC_FinishEncode
[function]
[call site]
02772
htscodecs_tls_free
[function]
[call site]
02773
RC_OutSize
[function]
[call site]
02774
htscodecs_tls_free
[function]
[call site]
02775
arith_compress_O1_RLE
[function]
[call site]
02776
arith_compress_bound
[function]
[call site]
02777
htscodecs_tls_alloc
[function]
[call site]
02778
SIMPLE_MODEL256_init
[function]
[call site]
02779
htscodecs_tls_alloc
[function]
[call site]
02780
htscodecs_tls_free
[function]
[call site]
02781
SIMPLE_MODEL258_init
[function]
[call site]
02782
RC_SetOutput
[function]
[call site]
02783
RC_SetOutputEnd
[function]
[call site]
02784
RC_StartEncode
[function]
[call site]
02785
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02786
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02787
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02788
RC_FinishEncode
[function]
[call site]
02789
htscodecs_tls_free
[function]
[call site]
02790
htscodecs_tls_free
[function]
[call site]
02791
RC_OutSize
[function]
[call site]
02792
htscodecs_tls_free
[function]
[call site]
02793
htscodecs_tls_free
[function]
[call site]
02794
arith_compress_O1
[function]
[call site]
02795
arith_compress_bound
[function]
[call site]
02796
htscodecs_tls_alloc
[function]
[call site]
02797
SIMPLE_MODEL256_init
[function]
[call site]
02798
RC_SetOutput
[function]
[call site]
02799
RC_SetOutputEnd
[function]
[call site]
02800
RC_StartEncode
[function]
[call site]
02801
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02802
RC_FinishEncode
[function]
[call site]
02803
htscodecs_tls_free
[function]
[call site]
02804
RC_OutSize
[function]
[call site]
02805
htscodecs_tls_free
[function]
[call site]
02806
arith_compress_O0
[function]
[call site]
02807
arith_compress_bound
[function]
[call site]
02808
SIMPLE_MODEL256_init
[function]
[call site]
02809
RC_SetOutput
[function]
[call site]
02810
RC_SetOutputEnd
[function]
[call site]
02811
RC_StartEncode
[function]
[call site]
02812
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02813
RC_FinishEncode
[function]
[call site]
02814
RC_OutSize
[function]
[call site]
02815
tok3_encode_names
[function]
[call site]
02816
create_context
[function]
[call site]
02817
build_trie
[function]
[call site]
02818
calloc
[call site]
02819
pool_create
[function]
[call site]
02820
pool_alloc
[function]
[call site]
02821
new_pool
[function]
[call site]
02822
realloc
[call site]
02823
free_context
[function]
[call site]
02824
free_context
[function]
[call site]
02825
encode_name
[function]
[call site]
02826
search_trie
[function]
[call site]
02827
__ctype_b_loc
[call site]
02828
__ctype_b_loc
[call site]
02829
__ctype_b_loc
[call site]
02830
__ctype_b_loc
[call site]
02831
__ctype_b_loc
[call site]
02832
calloc
[call site]
02833
__ctype_b_loc
[call site]
02834
strlen
[call site]
02835
encode_token_dup
[function]
[call site]
02836
encode_token_int
[function]
[call site]
02837
encode_token_type
[function]
[call site]
02838
descriptor_grow
[function]
[call site]
02839
realloc
[call site]
02840
descriptor_grow
[function]
[call site]
02841
encode_token_diff
[function]
[call site]
02842
encode_token_int
[function]
[call site]
02843
encode_token_char
[function]
[call site]
02844
encode_token_type
[function]
[call site]
02845
descriptor_grow
[function]
[call site]
02846
memcmp
[call site]
02847
encode_token_match
[function]
[call site]
02848
encode_token_type
[function]
[call site]
02849
encode_token_alpha
[function]
[call site]
02850
encode_token_type
[function]
[call site]
02851
descriptor_grow
[function]
[call site]
02852
encode_token_alpha
[function]
[call site]
02853
__ctype_b_loc
[call site]
02854
__ctype_b_loc
[call site]
02855
__ctype_b_loc
[call site]
02856
memcmp
[call site]
02857
encode_token_match
[function]
[call site]
02858
encode_token_alpha
[function]
[call site]
02859
encode_token_alpha
[function]
[call site]
02860
__ctype_b_loc
[call site]
02861
encode_token_match
[function]
[call site]
02862
encode_token_int1
[function]
[call site]
02863
encode_token_type
[function]
[call site]
02864
descriptor_grow
[function]
[call site]
02865
encode_token_int1_
[function]
[call site]
02866
descriptor_grow
[function]
[call site]
02867
encode_token_int
[function]
[call site]
02868
encode_token_int1_
[function]
[call site]
02869
encode_token_int
[function]
[call site]
02870
__ctype_b_loc
[call site]
02871
__ctype_b_loc
[call site]
02872
encode_token_match
[function]
[call site]
02873
encode_token_int1
[function]
[call site]
02874
encode_token_int
[function]
[call site]
02875
encode_token_int
[function]
[call site]
02876
encode_token_match
[function]
[call site]
02877
encode_token_char
[function]
[call site]
02878
encode_token_char
[function]
[call site]
02879
encode_token_end
[function]
[call site]
02880
encode_token_type
[function]
[call site]
02881
realloc
[call site]
02882
free_context
[function]
[call site]
02883
arith_compress_bound
[function]
[call site]
02884
free_context
[function]
[call site]
02885
compress
[function]
[call site]
02886
arith_encode
[function]
[call site]
02887
arith_compress_to
[function]
[call site]
02888
var_put_u32
[function]
[call site]
02889
rans_encode
[function]
[call site]
02890
rans_compress_to_4x16
[function]
[call site]
02891
var_put_u32
[function]
[call site]
02892
free_context
[function]
[call site]
02893
memcmp
[call site]
02894
free_context
[function]
[call site]
02895
free_context
[function]
[call site]
02896
pthread_mutex_lock
[call site]
02897
pthread_mutex_unlock
[call site]
02898
pthread_mutex_unlock
[call site]
02899
cram_compress_by_method
[function]
[call site]
02900
cram_block_method2str
[function]
[call site]
02901
hts_log
[function]
[call site]
02902
pthread_mutex_lock
[call site]
02903
pthread_mutex_unlock
[call site]
02904
cram_compress_block3
[function]
[call site]
02905
cram_compress_by_method
[function]
[call site]
02906
hts_log
[function]
[call site]
02907
cram_block_method2str
[function]
[call site]
02908
hts_log
[function]
[call site]
02909
pthread_mutex_lock
[call site]
02910
pthread_mutex_unlock
[call site]
02911
cram_compress_block2
[function]
[call site]
02912
cram_compress_block2
[function]
[call site]
02913
cram_compress_block2
[function]
[call site]
02914
cram_compress_block2
[function]
[call site]
02915
cram_compress_block2
[function]
[call site]
02916
cram_compress_block2
[function]
[call site]
02917
cram_compress_block2
[function]
[call site]
02918
cram_compress_block2
[function]
[call site]
02919
cram_compress_block2
[function]
[call site]
02920
cram_compress_block2
[function]
[call site]
02921
cram_compress_block2
[function]
[call site]
02922
cram_compress_block2
[function]
[call site]
02923
cram_compress_block2
[function]
[call site]
02924
cram_compress_block2
[function]
[call site]
02925
cram_compress_block2
[function]
[call site]
02926
hts_realloc_p
[function]
[call site]
02927
cram_free_block
[function]
[call site]
02928
cram_encode_slice_header
[function]
[call site]
02929
cram_new_block
[function]
[call site]
02930
hts_malloc_pse
[function]
[call site]
02931
hts_add_sat2
[function]
[call site]
02932
hts_prod_sat2
[function]
[call site]
02933
hts_add_sat2
[function]
[call site]
02934
hts_malloc
[function]
[call site]
02935
cram_free_block
[function]
[call site]
02936
hts_log
[function]
[call site]
02937
cram_free_block
[function]
[call site]
02938
__assert_fail
[call site]
02939
cram_encode_compression_header
[function]
[call site]
02940
cram_new_block
[function]
[call site]
02941
cram_new_block
[function]
[call site]
02942
itf8_put_blk
[function]
[call site]
02943
itf8_put
[function]
[call site]
02944
block_append
[function]
[call site]
02945
itf8_put_blk
[function]
[call site]
02946
itf8_put_blk
[function]
[call site]
02947
itf8_put_blk
[function]
[call site]
02948
itf8_put_blk
[function]
[call site]
02949
itf8_put_blk
[function]
[call site]
02950
kh_destroy_map
[function]
[call site]
02951
kh_init_map
[function]
[call site]
02952
calloc
[call site]
02953
kh_put_map
[function]
[call site]
02954
kh_resize_map
[function]
[call site]
02955
__errno_location
[call site]
02956
realloc
[call site]
02957
__ac_FNV1a_hash_string
[function]
[call site]
02958
strcmp
[call site]
02959
kh_put_map
[function]
[call site]
02960
kh_put_map
[function]
[call site]
02961
kh_put_map
[function]
[call site]
02962
kh_put_map
[function]
[call site]
02963
kh_put_map
[function]
[call site]
02964
kh_put_map
[function]
[call site]
02965
kh_put_map
[function]
[call site]
02966
block_append
[function]
[call site]
02967
block_append_char
[function]
[call site]
02968
sub_idx
[function]
[call site]
02969
sub_idx
[function]
[call site]
02970
sub_idx
[function]
[call site]
02971
sub_idx
[function]
[call site]
02972
sub_idx
[function]
[call site]
02973
sub_idx
[function]
[call site]
02974
sub_idx
[function]
[call site]
02975
sub_idx
[function]
[call site]
02976
sub_idx
[function]
[call site]
02977
sub_idx
[function]
[call site]
02978
sub_idx
[function]
[call site]
02979
sub_idx
[function]
[call site]
02980
sub_idx
[function]
[call site]
02981
sub_idx
[function]
[call site]
02982
sub_idx
[function]
[call site]
02983
sub_idx
[function]
[call site]
02984
sub_idx
[function]
[call site]
02985
sub_idx
[function]
[call site]
02986
sub_idx
[function]
[call site]
02987
sub_idx
[function]
[call site]
02988
block_append
[function]
[call site]
02989
block_append
[function]
[call site]
02990
block_append
[function]
[call site]
02991
block_append
[function]
[call site]
02992
block_append
[function]
[call site]
02993
hts_log
[function]
[call site]
02994
cram_free_block
[function]
[call site]
02995
hts_malloc_p
[function]
[call site]
02996
cram_ref_decr
[function]
[call site]
02997
cram_ref_decr
[function]
[call site]
02998
cram_flush_container2
[function]
[call site]
02999
htell
[function]
[call site]
03000
cram_write_container
[function]
[call site]
03001
itf8_put
[function]
[call site]
03002
crc32
[call site]
03003
hwrite
[function]
[call site]
03004
htell
[function]
[call site]
03005
cram_write_block
[function]
[call site]
03006
__assert_fail
[call site]
03007
hputc
[function]
[call site]
03008
hputc2
[function]
[call site]
03009
flush_buffer
[function]
[call site]
03010
hputc
[function]
[call site]
03011
hwrite
[function]
[call site]
03012
hwrite
[function]
[call site]
03013
hwrite
[function]
[call site]
03014
__assert_fail
[call site]
03015
crc32
[call site]
03016
crc32
[call site]
03017
crc32
[call site]
03018
int32_encode
[function]
[call site]
03019
hwrite
[function]
[call site]
03020
htell
[function]
[call site]
03021
cram_write_block
[function]
[call site]
03022
cram_write_block
[function]
[call site]
03023
htell
[function]
[call site]
03024
cram_index_slice
[function]
[call site]
03025
cram_index_build_multiref
[function]
[call site]
03026
cram_decode_slice
[function]
[call site]
03027
cram_dependent_data_series
[function]
[call site]
03028
cram_uncompress_block
[function]
[call site]
03029
cram_uncompress_block
[function]
[call site]
03030
hts_calloc_ps
[function]
[call site]
03031
cram_codec_to_id
[function]
[call site]
03032
cram_codec_to_id
[function]
[call site]
03033
cram_codec_to_id
[function]
[call site]
03034
cram_uncompress_block
[function]
[call site]
03035
cram_codec_to_id
[function]
[call site]
03036
cram_uncompress_block
[function]
[call site]
03037
cram_codec_to_id
[function]
[call site]
03038
cram_codec_to_id
[function]
[call site]
03039
block_resize_exact
[function]
[call site]
03040
block_resize_exact
[function]
[call site]
03041
block_resize_exact
[function]
[call site]
03042
strcmp
[call site]
03043
hts_malloc_p
[function]
[call site]
03044
hts_log
[function]
[call site]
03045
cram_get_block_by_id
[function]
[call site]
03046
cram_uncompress_block
[function]
[call site]
03047
hts_log
[function]
[call site]
03048
cram_get_ref
[function]
[call site]
03049
hts_log
[function]
[call site]
03050
pthread_mutex_lock
[call site]
03051
pthread_mutex_lock
[call site]
03052
pthread_mutex_unlock
[call site]
03053
pthread_mutex_unlock
[call site]
03054
hts_log
[function]
[call site]
03055
memcmp
[call site]
03056
hts_log
[function]
[call site]
03057
hts_log
[function]
[call site]
03058
hts_md5_init
[function]
[call site]
03059
hts_md5_update
[function]
[call site]
03060
hts_md5_final
[function]
[call site]
03061
hts_md5_destroy
[function]
[call site]
03062
cram_get_block_by_id
[function]
[call site]
03063
hts_md5_init
[function]
[call site]
03064
hts_md5_update
[function]
[call site]
03065
hts_md5_final
[function]
[call site]
03066
hts_md5_destroy
[function]
[call site]
03067
memcmp
[call site]
03068
sam_hdr_tid2name
[function]
[call site]
03069
hts_log
[function]
[call site]
03070
md5_print
[function]
[call site]
03071
hts_log
[function]
[call site]
03072
md5_print
[function]
[call site]
03073
hts_log
[function]
[call site]
03074
sam_hdr_find_tag_id
[function]
[call site]
03075
sam_hdr_fill_hrecs
[function]
[call site]
03076
sam_hrecs_find_type_id
[function]
[call site]
03077
sam_hrecs_find_key
[function]
[call site]
03078
kputsn
[function]
[call site]
03079
hts_log
[function]
[call site]
03080
hts_log
[function]
[call site]
03081
ks_free
[function]
[call site]
03082
ks_initialize
[function]
[call site]
03083
pthread_mutex_lock
[call site]
03084
pthread_mutex_lock
[call site]
03085
calloc
[call site]
03086
pthread_mutex_unlock
[call site]
03087
pthread_mutex_unlock
[call site]
03088
hts_log
[function]
[call site]
03089
pthread_mutex_lock
[call site]
03090
pthread_mutex_unlock
[call site]
03091
cram_get_ref
[function]
[call site]
03092
pthread_mutex_lock
[call site]
03093
pthread_mutex_unlock
[call site]
03094
pthread_mutex_lock
[call site]
03095
pthread_mutex_unlock
[call site]
03096
cram_ref_decr
[function]
[call site]
03097
pthread_mutex_lock
[call site]
03098
pthread_mutex_lock
[call site]
03099
pthread_mutex_unlock
[call site]
03100
pthread_mutex_unlock
[call site]
03101
hts_log
[function]
[call site]
03102
hts_log
[function]
[call site]
03103
pthread_mutex_lock
[call site]
03104
pthread_mutex_unlock
[call site]
03105
hts_log
[function]
[call site]
03106
hts_log
[function]
[call site]
03107
hts_log
[function]
[call site]
03108
cram_decode_tlen
[function]
[call site]
03109
cram_decode_tlen
[function]
[call site]
03110
cram_decode_tlen
[function]
[call site]
03111
cram_decode_aux_1_0
[function]
[call site]
03112
map_find
[function]
[call site]
03113
block_append
[function]
[call site]
03114
cram_decode_aux
[function]
[call site]
03115
strlen
[call site]
03116
map_find
[function]
[call site]
03117
block_append
[function]
[call site]
03118
aux_ele_size
[function]
[call site]
03119
hts_log
[function]
[call site]
03120
block_resize
[function]
[call site]
03121
block_resize
[function]
[call site]
03122
hts_log
[function]
[call site]
03123
cram_decode_seq
[function]
[call site]
03124
block_append
[function]
[call site]
03125
hts_realloc_p
[function]
[call site]
03126
hts_log
[function]
[call site]
03127
hts_log
[function]
[call site]
03128
memchr
[call site]
03129
add_md_char
[function]
[call site]
03130
block_append_uint
[function]
[call site]
03131
block_grow
[function]
[call site]
03132
append_uint32
[function]
[call site]
03133
block_append_char
[function]
[call site]
03134
block_append_uint
[function]
[call site]
03135
add_md_char
[function]
[call site]
03136
block_append_uint
[function]
[call site]
03137
block_append_char
[function]
[call site]
03138
block_append
[function]
[call site]
03139
block_append_char
[function]
[call site]
03140
block_append
[function]
[call site]
03141
block_append_uint
[function]
[call site]
03142
block_append_uint
[function]
[call site]
03143
block_append_uint
[function]
[call site]
03144
block_append_char
[function]
[call site]
03145
block_append_uint
[function]
[call site]
03146
block_append_char
[function]
[call site]
03147
hts_log
[function]
[call site]
03148
memchr
[call site]
03149
add_md_char
[function]
[call site]
03150
hts_realloc_p
[function]
[call site]
03151
block_append_uint
[function]
[call site]
03152
hts_realloc_p
[function]
[call site]
03153
block_append_char
[function]
[call site]
03154
block_append
[function]
[call site]
03155
hts_log
[function]
[call site]
03156
pthread_mutex_lock
[call site]
03157
cram_ref_decr
[function]
[call site]
03158
cram_ref_decr
[function]
[call site]
03159
pthread_mutex_unlock
[call site]
03160
cram_decode_slice_xref
[function]
[call site]
03161
hts_log
[function]
[call site]
03162
cram_free_block
[function]
[call site]
03163
block_resize_exact
[function]
[call site]
03164
block_resize_exact
[function]
[call site]
03165
block_resize_exact
[function]
[call site]
03166
block_resize_exact
[function]
[call site]
03167
bulk_cram_to_bam
[function]
[call site]
03168
pthread_mutex_lock
[call site]
03169
pthread_mutex_unlock
[call site]
03170
hts_realloc_p
[function]
[call site]
03171
bam_set_mempolicy
[function]
[call site]
03172
calloc
[call site]
03173
calloc
[call site]
03174
bam_set_mempolicy
[function]
[call site]
03175
cram_to_bam
[function]
[call site]
03176
hts_log
[function]
[call site]
03177
strlen
[call site]
03178
append_uint64
[function]
[call site]
03179
append_uint32
[function]
[call site]
03180
append_uint32
[function]
[call site]
03181
append_sub32
[function]
[call site]
03182
append_uint32
[function]
[call site]
03183
append_sub32
[function]
[call site]
03184
append_uint64
[function]
[call site]
03185
bam_set1
[function]
[call site]
03186
bam_cigar2rqlens
[function]
[call site]
03187
hts_log
[function]
[call site]
03188
__errno_location
[call site]
03189
hts_log
[function]
[call site]
03190
__errno_location
[call site]
03191
hts_log
[function]
[call site]
03192
__errno_location
[call site]
03193
hts_log
[function]
[call site]
03194
__errno_location
[call site]
03195
subtract_check_underflow
[function]
[call site]
03196
subtract_check_underflow
[function]
[call site]
03197
subtract_check_underflow
[function]
[call site]
03198
subtract_check_underflow
[function]
[call site]
03199
subtract_check_underflow
[function]
[call site]
03200
hts_log
[function]
[call site]
03201
__errno_location
[call site]
03202
hts_add_sat2
[function]
[call site]
03203
realloc_bam_data
[function]
[call site]
03204
sam_realloc_bam_data
[function]
[call site]
03205
__errno_location
[call site]
03206
__errno_location
[call site]
03207
bam_get_mempolicy
[function]
[call site]
03208
realloc
[call site]
03209
bam_get_mempolicy
[function]
[call site]
03210
bam_set_mempolicy
[function]
[call site]
03211
hts_reg2bin
[function]
[call site]
03212
strncpy
[call site]
03213
bam_tag2cigar
[function]
[call site]
03214
bam_aux_get
[function]
[call site]
03215
__errno_location
[call site]
03216
__errno_location
[call site]
03217
__errno_location
[call site]
03218
le_to_u32
[function]
[call site]
03219
possibly_expand_bam_data
[function]
[call site]
03220
__errno_location
[call site]
03221
sam_realloc_bam_data
[function]
[call site]
03222
bam_endpos
[function]
[call site]
03223
bam_cigar2rlen
[function]
[call site]
03224
hts_reg2bin
[function]
[call site]
03225
hts_log
[function]
[call site]
03226
pthread_mutex_lock
[call site]
03227
cram_ref_decr
[function]
[call site]
03228
pthread_mutex_unlock
[call site]
03229
hts_log
[function]
[call site]
03230
snprintf
[call site]
03231
strlen
[call site]
03232
bgzf_write
[function]
[call site]
03233
hwrite
[function]
[call site]
03234
__assert_fail
[call site]
03235
lazy_flush
[function]
[call site]
03236
mt_queue
[function]
[call site]
03237
bgzf_flush
[function]
[call site]
03238
snprintf
[call site]
03239
strlen
[call site]
03240
bgzf_write
[function]
[call site]
03241
snprintf
[call site]
03242
strlen
[call site]
03243
bgzf_write
[function]
[call site]
03244
__errno_location
[call site]
03245
hts_tpool_dispatch2
[function]
[call site]
03246
hts_tpool_dispatch3
[function]
[call site]
03247
cram_flush_thread
[function]
[call site]
03248
cram_encode_container
[function]
[call site]
03249
hts_log
[function]
[call site]
03250
__errno_location
[call site]
03251
cram_flush_result
[function]
[call site]
03252
hts_tpool_next_result
[function]
[call site]
03253
pthread_mutex_lock
[call site]
03254
hts_tpool_next_result_locked
[function]
[call site]
03255
pthread_mutex_unlock
[call site]
03256
hts_tpool_result_data
[function]
[call site]
03257
hts_tpool_delete_result
[function]
[call site]
03258
cram_flush_container2
[function]
[call site]
03259
cram_free_slice
[function]
[call site]
03260
cram_free_slice
[function]
[call site]
03261
cram_free_container
[function]
[call site]
03262
hts_tpool_delete_result
[function]
[call site]
03263
cram_free_container
[function]
[call site]
03264
hts_usleep
[function]
[call site]
03265
cram_drain_rqueue
[function]
[call site]
03266
hts_tpool_process_flush
[function]
[call site]
03267
cram_flush_result
[function]
[call site]
03268
hts_tpool_process_destroy
[function]
[call site]
03269
pthread_mutex_destroy
[call site]
03270
pthread_mutex_destroy
[call site]
03271
pthread_mutex_destroy
[call site]
03272
pthread_mutex_destroy
[call site]
03273
cram_write_eof_block
[function]
[call site]
03274
cram_encode_compression_header
[function]
[call site]
03275
cram_write_container
[function]
[call site]
03276
cram_write_block
[function]
[call site]
03277
cram_close
[function]
[call site]
03278
free_bam_list
[function]
[call site]
03279
hclose
[function]
[call site]
03280
cram_free_file_def
[function]
[call site]
03281
sam_hdr_destroy
[function]
[call site]
03282
cram_free_container
[function]
[call site]
03283
cram_free_container
[function]
[call site]
03284
refs_free
[function]
[call site]
03285
kh_destroy_m_metrics
[function]
[call site]
03286
cram_index_free
[function]
[call site]
03287
cram_index_free_recurse
[function]
[call site]
03288
cram_index_free_recurse
[function]
[call site]
03289
hts_tpool_destroy
[function]
[call site]
03290
bgzf_close
[function]
[call site]
03291
cram_free_block
[function]
[call site]
03292
kh_destroy_map
[function]
[call site]
03293
cram_free_block
[function]
[call site]
03294
sam_state_destroy
[function]
[call site]
03295
fastq_state_destroy
[function]
[call site]
03296
kh_destroy_tag
[function]
[call site]
03297
ks_free
[function]
[call site]
03298
ks_initialize
[function]
[call site]
03299
ks_free
[function]
[call site]
03300
ks_free
[function]
[call site]
03301
regfree
[call site]
03302
bgzf_close
[function]
[call site]
03303
hclose
[function]
[call site]
03304
hts_idx_close_otf_fp
[function]
[call site]
03305
need_idx_ugly_delay_hack
[function]
[call site]
03306
idx_write_uint64
[function]
[call site]
03307
ed_is_big
[function]
[call site]
03308
ed_swap_8
[function]
[call site]
03309
bgzf_write
[function]
[call site]
03310
bgzf_close
[function]
[call site]
03311
sam_hdr_destroy
[function]
[call site]
03312
hts_idx_destroy
[function]
[call site]
03313
cram_index_free
[function]
[call site]
03314
kh_destroy_bin
[function]
[call site]
03315
hts_filter_free
[function]
[call site]
03316
__errno_location
[call site]
03317
view_sam
[function]
[call site]
03318
abort
[call site]
03319
hopen
[function]
[call site]
03320
hts_hopen
[function]
[call site]
03321
hclose
[function]
[call site]
03322
abort
[call site]
03323
hts_open
[function]
[call site]
03324
hts_open_format
[function]
[call site]
03325
strncpy
[call site]
03326
strchr
[call site]
03327
strchr
[call site]
03328
strchr
[call site]
03329
strstr
[call site]
03330
strdup
[call site]
03331
hopen
[function]
[call site]
03332
hts_hopen
[function]
[call site]
03333
hts_opt_apply
[function]
[call site]
03334
__errno_location
[call site]
03335
__errno_location
[call site]
03336
__errno_location
[call site]
03337
__errno_location
[call site]
03338
strerror
[call site]
03339
hts_log
[function]
[call site]
03340
hclose_abruptly
[function]
[call site]
03341
abort
[call site]
03342
sam_hdr_read
[function]
[call site]
03343
__errno_location
[call site]
03344
bam_hdr_read
[function]
[call site]
03345
bgzf_check_EOF
[function]
[call site]
03346
pthread_mutex_lock
[call site]
03347
pthread_cond_signal
[call site]
03348
hts_tpool_wake_dispatch
[function]
[call site]
03349
pthread_mutex_unlock
[call site]
03350
pthread_cond_wait
[call site]
03351
pthread_cond_signal
[call site]
03352
abort
[call site]
03353
pthread_mutex_unlock
[call site]
03354
bgzf_check_EOF_common
[function]
[call site]
03355
htell
[function]
[call site]
03356
hseek
[function]
[call site]
03357
__errno_location
[call site]
03358
hclearerr
[function]
[call site]
03359
__errno_location
[call site]
03360
hclearerr
[function]
[call site]
03361
hread
[function]
[call site]
03362
hseek
[function]
[call site]
03363
memcmp
[call site]
03364
perror
[call site]
03365
hts_log
[function]
[call site]
03366
bgzf_read
[function]
[call site]
03367
memcmp
[call site]
03368
hts_log
[function]
[call site]
03369
sam_hdr_init
[function]
[call site]
03370
bgzf_read
[function]
[call site]
03371
le_to_u32
[function]
[call site]
03372
bgzf_read
[function]
[call site]
03373
bgzf_read
[function]
[call site]
03374
ed_swap_4p
[function]
[call site]
03375
ed_swap_4
[function]
[call site]
03376
calloc
[call site]
03377
calloc
[call site]
03378
bgzf_read
[function]
[call site]
03379
ed_swap_4p
[function]
[call site]
03380
bgzf_read
[function]
[call site]
03381
realloc
[call site]
03382
bgzf_read
[function]
[call site]
03383
ed_swap_4p
[function]
[call site]
03384
hts_log
[function]
[call site]
03385
hts_log
[function]
[call site]
03386
hts_log
[function]
[call site]
03387
sam_hdr_destroy
[function]
[call site]
03388
sam_hdr_sanitise
[function]
[call site]
03389
hts_log
[function]
[call site]
03390
sam_hdr_destroy
[function]
[call site]
03391
hts_log
[function]
[call site]
03392
hts_log
[function]
[call site]
03393
sam_hdr_destroy
[function]
[call site]
03394
realloc
[call site]
03395
sam_hdr_destroy
[function]
[call site]
03396
sam_hdr_dup
[function]
[call site]
03397
sam_hdr_init
[function]
[call site]
03398
calloc
[call site]
03399
calloc
[call site]
03400
strdup
[call site]
03401
sam_hdr_dup_sdict
[function]
[call site]
03402
kh_init_s2i
[function]
[call site]
03403
kh_get_s2i
[function]
[call site]
03404
kh_put_s2i
[function]
[call site]
03405
kh_destroy_s2i
[function]
[call site]
03406
sam_hrecs_rebuild_text
[function]
[call site]
03407
kputsn
[function]
[call site]
03408
sam_hrecs_rebuild_lines
[function]
[call site]
03409
kputsn
[function]
[call site]
03410
build_header_line
[function]
[call site]
03411
kputc_
[function]
[call site]
03412
kputsn
[function]
[call site]
03413
kputc_
[function]
[call site]
03414
kputsn
[function]
[call site]
03415
kputc
[function]
[call site]
03416
ks_release
[function]
[call site]
03417
ks_release
[function]
[call site]
03418
sam_hdr_update_target_arrays
[function]
[call site]
03419
hts_malloc_ps
[function]
[call site]
03420
sam_hdr_destroy
[function]
[call site]
03421
sam_hdr_sanitise
[function]
[call site]
03422
sam_hdr_create
[function]
[call site]
03423
sam_hdr_init
[function]
[call site]
03424
sam_hdr_build_from_sam_file
[function]
[call site]
03425
sam_hrecs_new
[function]
[call site]
03426
hts_getline
[function]
[call site]
03427
hts_log
[function]
[call site]
03428
abort
[call site]
03429
kgetline2
[function]
[call site]
03430
ks_resize
[function]
[call site]
03431
hgetln_wrapper
[function]
[call site]
03432
hgetln
[function]
[call site]
03433
herrno
[function]
[call site]
03434
__errno_location
[call site]
03435
bgzf_getline
[function]
[call site]
03436
bgzf_read_block
[function]
[call site]
03437
memchr
[call site]
03438
ks_expand
[function]
[call site]
03439
bgzf_htell
[function]
[call site]
03440
abort
[call site]
03441
isalpha_c
[function]
[call site]
03442
sam_hrecs_error
[function]
[call site]
03443
strncmp
[call site]
03444
kputc
[function]
[call site]
03445
valid_sam_header_type
[function]
[call site]
03446
hts_log
[function]
[call site]
03447
warn_if_known_stderr
[function]
[call site]
03448
sam_hrecs_parse_single_line
[function]
[call site]
03449
TYPEKEY
[function]
[call site]
03450
kputsn
[function]
[call site]
03451
kputc
[function]
[call site]
03452
bgzf_peek
[function]
[call site]
03453
bgzf_read_block
[function]
[call site]
03454
hts_log
[function]
[call site]
03455
hpeek
[function]
[call site]
03456
strstr
[call site]
03457
hopen
[function]
[call site]
03458
khgetline
[function]
[call site]
03459
kgetline
[function]
[call site]
03460
ks_resize
[function]
[call site]
03461
strlen
[call site]
03462
hgets_wrapper
[function]
[call site]
03463
hgets
[function]
[call site]
03464
strchr
[call site]
03465
strtoll
[call site]
03466
kputs
[function]
[call site]
03467
kputsn
[function]
[call site]
03468
kputs
[function]
[call site]
03469
kputll
[function]
[call site]
03470
kputc
[function]
[call site]
03471
sam_hrecs_parse_single_line
[function]
[call site]
03472
ks_free
[function]
[call site]
03473
hclose
[function]
[call site]
03474
hts_log
[function]
[call site]
03475
kh_grow_to_fit_m_s2i
[function]
[call site]
03476
hts_realloc_p
[function]
[call site]
03477
sam_hrecs_update_hashes
[function]
[call site]
03478
kputsn
[function]
[call site]
03479
ks_release
[function]
[call site]
03480
sam_hdr_update_target_arrays
[function]
[call site]
03481
ks_free
[function]
[call site]
03482
sam_hdr_destroy
[function]
[call site]
03483
sam_hdr_destroy
[function]
[call site]
03484
sam_hdr_sanitise
[function]
[call site]
03485
sam_hdr_init
[function]
[call site]
03486
__errno_location
[call site]
03487
__errno_location
[call site]
03488
sam_hdr_incr_ref
[function]
[call site]
03489
hts_close_or_abort
[function]
[call site]
03490
hts_close
[function]
[call site]
03491
abort
[call site]
03492
hts_close
[function]
[call site]
03493
hts_close
[function]
[call site]
03494
sam_hdr_count_lines
[function]
[call site]
03495
sam_hdr_fill_hrecs
[function]
[call site]
03496
sam_hrecs_find_type_id
[function]
[call site]
03497
sam_hdr_write
[function]
[call site]
03498
__errno_location
[call site]
03499
bam_hdr_write
[function]
[call site]
03500
sam_hrecs_rebuild_text
[function]
[call site]
03501
hts_log
[function]
[call site]
03502
hts_log
[function]
[call site]
03503
hts_log
[function]
[call site]
03504
hts_log
[function]
[call site]
03505
hts_log
[function]
[call site]
03506
hts_log
[function]
[call site]
03507
bgzf_write
[function]
[call site]
03508
ed_swap_4
[function]
[call site]
03509
bgzf_write
[function]
[call site]
03510
bgzf_write
[function]
[call site]
03511
ed_swap_4
[function]
[call site]
03512
bgzf_write
[function]
[call site]
03513
bgzf_write
[function]
[call site]
03514
bgzf_write
[function]
[call site]
03515
bgzf_write
[function]
[call site]
03516
strlen
[call site]
03517
ed_swap_4
[function]
[call site]
03518
bgzf_write
[function]
[call site]
03519
bgzf_write
[function]
[call site]
03520
bgzf_write
[function]
[call site]
03521
ed_swap_4
[function]
[call site]
03522
bgzf_write
[function]
[call site]
03523
bgzf_write
[function]
[call site]
03524
bgzf_flush
[function]
[call site]
03525
cram_set_header2
[function]
[call site]
03526
sam_hdr_destroy
[function]
[call site]
03527
sam_hdr_dup
[function]
[call site]
03528
refs_from_header
[function]
[call site]
03529
cram_load_reference
[function]
[call site]
03530
cram_write_SAM_hdr
[function]
[call site]
03531
cram_write_file_def
[function]
[call site]
03532
hwrite
[function]
[call site]
03533
sam_hrecs_find_rg
[function]
[call site]
03534
sam_hdr_add_line
[function]
[call site]
03535
sam_hdr_fill_hrecs
[function]
[call site]
03536
sam_hrecs_vadd
[function]
[call site]
03537
rebuild_target_arrays
[function]
[call site]
03538
redact_header_text
[function]
[call site]
03539
refs_from_header
[function]
[call site]
03540
refs2id
[function]
[call site]
03541
sam_hrecs_find_type_id
[function]
[call site]
03542
sam_hrecs_find_key
[function]
[call site]
03543
cram_get_ref
[function]
[call site]
03544
hts_log
[function]
[call site]
03545
hts_log
[function]
[call site]
03546
hts_log
[function]
[call site]
03547
pthread_mutex_lock
[call site]
03548
pthread_mutex_unlock
[call site]
03549
hts_md5_init
[function]
[call site]
03550
hts_md5_update
[function]
[call site]
03551
hts_md5_final
[function]
[call site]
03552
hts_md5_destroy
[function]
[call site]
03553
cram_ref_decr
[function]
[call site]
03554
hts_md5_hex
[function]
[call site]
03555
sam_hdr_update_line
[function]
[call site]
03556
sam_hdr_fill_hrecs
[function]
[call site]
03557
sam_hrecs_find_type_id
[function]
[call site]
03558
check_for_name_update
[function]
[call site]
03559
TYPEKEY
[function]
[call site]
03560
TYPEKEY
[function]
[call site]
03561
TYPEKEY
[function]
[call site]
03562
sam_hrecs_find_key
[function]
[call site]
03563
__assert_fail
[call site]
03564
strcmp
[call site]
03565
strcmp
[call site]
03566
kh_get_m_s2i
[function]
[call site]
03567
hts_log
[function]
[call site]
03568
TYPEKEY
[function]
[call site]
03569
hts_log
[function]
[call site]
03570
sam_hrecs_vupdate
[function]
[call site]
03571
kh_get_m_s2i
[function]
[call site]
03572
sam_hrecs_find_key
[function]
[call site]
03573
__assert_fail
[call site]
03574
__assert_fail
[call site]
03575
__assert_fail
[call site]
03576
kh_del_m_s2i
[function]
[call site]
03577
kh_put_m_s2i
[function]
[call site]
03578
hts_log
[function]
[call site]
03579
TYPEKEY
[function]
[call site]
03580
sam_hrecs_update_hashes
[function]
[call site]
03581
rebuild_target_arrays
[function]
[call site]
03582
redact_header_text
[function]
[call site]
03583
full_path
[function]
[call site]
03584
strlen
[call site]
03585
hisremote
[function]
[call site]
03586
hts_log
[function]
[call site]
03587
strncpy
[call site]
03588
toupper_c
[function]
[call site]
03589
strncpy
[call site]
03590
getcwd
[call site]
03591
strlen
[call site]
03592
strncpy
[call site]
03593
snprintf
[call site]
03594
sam_hdr_update_line
[function]
[call site]
03595
sam_hdr_remove_tag_all
[function]
[call site]
03596
sam_hdr_fill_hrecs
[function]
[call site]
03597
TYPEKEY
[function]
[call site]
03598
kh_get_sam_hrecs_t
[function]
[call site]
03599
sam_hrecs_remove_key
[function]
[call site]
03600
sam_hrecs_find_key
[function]
[call site]
03601
TYPEKEY
[function]
[call site]
03602
__assert_fail
[call site]
03603
sam_hrecs_find_key
[function]
[call site]
03604
__assert_fail
[call site]
03605
kh_get_m_s2i
[function]
[call site]
03606
sam_hrecs_remove_ref_altnames
[function]
[call site]
03607
kstrtok
[function]
[call site]
03608
ks_clear
[function]
[call site]
03609
kputsn
[function]
[call site]
03610
kh_get_m_s2i
[function]
[call site]
03611
strcmp
[call site]
03612
kh_del_m_s2i
[function]
[call site]
03613
pool_free
[function]
[call site]
03614
hts_log
[function]
[call site]
03615
sam_hdr_length
[function]
[call site]
03616
sam_hdr_rebuild
[function]
[call site]
03617
rebuild_target_arrays
[function]
[call site]
03618
hts_log
[function]
[call site]
03619
sam_hdr_link_pg
[function]
[call site]
03620
sam_hdr_fill_hrecs
[function]
[call site]
03621
hts_realloc_p
[function]
[call site]
03622
calloc
[call site]
03623
__assert_fail
[call site]
03624
kh_get_m_s2i
[function]
[call site]
03625
hts_log
[function]
[call site]
03626
hts_log
[function]
[call site]
03627
redact_header_text
[function]
[call site]
03628
hts_log
[function]
[call site]
03629
sam_hrecs_rebuild_text
[function]
[call site]
03630
ks_free
[function]
[call site]
03631
hts_log
[function]
[call site]
03632
ks_len
[function]
[call site]
03633
ks_release
[function]
[call site]
03634
hts_log
[function]
[call site]
03635
int32_encode
[function]
[call site]
03636
sam_hdr_str
[function]
[call site]
03637
sam_hdr_rebuild
[function]
[call site]
03638
hwrite
[function]
[call site]
03639
cram_new_block
[function]
[call site]
03640
cram_new_container
[function]
[call site]
03641
calloc
[call site]
03642
calloc
[call site]
03643
cram_new_compression_header
[function]
[call site]
03644
calloc
[call site]
03645
cram_new_block
[function]
[call site]
03646
kh_init_m_s2i
[function]
[call site]
03647
cram_free_block
[function]
[call site]
03648
string_pool_create
[function]
[call site]
03649
kh_destroy_m_s2i
[function]
[call site]
03650
cram_free_block
[function]
[call site]
03651
cram_stats_create
[function]
[call site]
03652
calloc
[call site]
03653
kh_init_m_tagmap
[function]
[call site]
03654
calloc
[call site]
03655
cram_free_block
[function]
[call site]
03656
cram_free_container
[function]
[call site]
03657
int32_put_blk
[function]
[call site]
03658
block_append
[function]
[call site]
03659
sam_hdr_str
[function]
[call site]
03660
block_append
[function]
[call site]
03661
cram_compress_block
[function]
[call site]
03662
cram_compress_block2
[function]
[call site]
03663
cram_free_block
[function]
[call site]
03664
cram_free_container
[function]
[call site]
03665
calloc
[call site]
03666
cram_free_block
[function]
[call site]
03667
cram_free_container
[function]
[call site]
03668
block_append
[function]
[call site]
03669
cram_write_container
[function]
[call site]
03670
cram_free_block
[function]
[call site]
03671
cram_free_container
[function]
[call site]
03672
cram_write_block
[function]
[call site]
03673
cram_free_block
[function]
[call site]
03674
cram_free_container
[function]
[call site]
03675
block_resize
[function]
[call site]
03676
cram_write_block
[function]
[call site]
03677
cram_free_block
[function]
[call site]
03678
cram_free_container
[function]
[call site]
03679
cram_free_block
[function]
[call site]
03680
cram_free_container
[function]
[call site]
03681
hflush
[function]
[call site]
03682
sam_hrecs_rebuild_text
[function]
[call site]
03683
strstr
[call site]
03684
bgzf_write
[function]
[call site]
03685
hwrite
[function]
[call site]
03686
kputsn
[function]
[call site]
03687
kputs
[function]
[call site]
03688
kputsn
[function]
[call site]
03689
kputw
[function]
[call site]
03690
kputc
[function]
[call site]
03691
bgzf_write
[function]
[call site]
03692
hwrite
[function]
[call site]
03693
bgzf_flush
[function]
[call site]
03694
hflush
[function]
[call site]
03695
__errno_location
[call site]
03696
sam_hdr_dup
[function]
[call site]
03697
sam_hdr_destroy
[function]
[call site]
03698
bam_init1
[function]
[call site]
03699
calloc
[call site]
03700
sam_read1
[function]
[call site]
03701
sam_read1_bam
[function]
[call site]
03702
bam_read1
[function]
[call site]
03703
bgzf_read_small
[function]
[call site]
03704
bgzf_read
[function]
[call site]
03705
ed_swap_4p
[function]
[call site]
03706
bgzf_read
[function]
[call site]
03707
le_to_u32
[function]
[call site]
03708
le_to_i32
[function]
[call site]
03709
le_to_u32
[function]
[call site]
03710
le_to_u32
[function]
[call site]
03711
le_to_u32
[function]
[call site]
03712
le_to_u32
[function]
[call site]
03713
le_to_i32
[function]
[call site]
03714
le_to_i32
[function]
[call site]
03715
realloc_bam_data
[function]
[call site]
03716
bgzf_read_small
[function]
[call site]
03717
fixup_missing_qname_nul
[function]
[call site]
03718
realloc_bam_data
[function]
[call site]
03719
bgzf_read_small
[function]
[call site]
03720
swap_data
[function]
[call site]
03721
ed_swap_4p
[function]
[call site]
03722
bam_tag2cigar
[function]
[call site]
03723
bam_cigar2rqlens
[function]
[call site]
03724
hts_reg2bin
[function]
[call site]
03725
hts_log
[function]
[call site]
03726
__errno_location
[call site]
03727
sam_read1_cram
[function]
[call site]
03728
cram_get_bam_seq
[function]
[call site]
03729
cram_get_seq
[function]
[call site]
03730
pthread_mutex_lock
[call site]
03731
pthread_mutex_unlock
[call site]
03732
cram_next_slice
[function]
[call site]
03733
cram_first_slice
[function]
[call site]
03734
cram_free_container
[function]
[call site]
03735
cram_read_container
[function]
[call site]
03736
cram_seek
[function]
[call site]
03737
cram_free_container
[function]
[call site]
03738
cram_read_container
[function]
[call site]
03739
cram_read_block
[function]
[call site]
03740
cram_decode_compression_header
[function]
[call site]
03741
calloc
[call site]
03742
cram_uncompress_block
[function]
[call site]
03743
hts_malloc_p
[function]
[call site]
03744
kh_init_map
[function]
[call site]
03745
cram_free_compression_header
[function]
[call site]
03746
cram_free_compression_header
[function]
[call site]
03747
kh_put_map
[function]
[call site]
03748
cram_free_compression_header
[function]
[call site]
03749
kh_put_map
[function]
[call site]
03750
cram_free_compression_header
[function]
[call site]
03751
kh_put_map
[function]
[call site]
03752
cram_free_compression_header
[function]
[call site]
03753
kh_put_map
[function]
[call site]
03754
cram_free_compression_header
[function]
[call site]
03755
cram_free_compression_header
[function]
[call site]
03756
kh_put_map
[function]
[call site]
03757
cram_free_compression_header
[function]
[call site]
03758
cram_decode_TD
[function]
[call site]
03759
cram_new_block
[function]
[call site]
03760
hts_log
[function]
[call site]
03761
cram_free_block
[function]
[call site]
03762
cram_free_block
[function]
[call site]
03763
cram_free_block
[function]
[call site]
03764
block_append
[function]
[call site]
03765
block_append_char
[function]
[call site]
03766
calloc
[call site]
03767
cram_free_block
[function]
[call site]
03768
cram_free_block
[function]
[call site]
03769
cram_free_compression_header
[function]
[call site]
03770
kh_put_map
[function]
[call site]
03771
cram_free_compression_header
[function]
[call site]
03772
hts_log
[function]
[call site]
03773
cram_free_compression_header
[function]
[call site]
03774
cram_free_compression_header
[function]
[call site]
03775
cram_free_compression_header
[function]
[call site]
03776
hts_log
[function]
[call site]
03777
hts_log
[function]
[call site]
03778
cram_decoder_init
[function]
[call site]
03779
cram_encoding2str
[function]
[call site]
03780
hts_log
[function]
[call site]
03781
cram_free_compression_header
[function]
[call site]
03782
cram_free_compression_header
[function]
[call site]
03783
cram_free_compression_header
[function]
[call site]
03784
cram_free_compression_header
[function]
[call site]
03785
cram_decoder_init
[function]
[call site]
03786
cram_free_compression_header
[function]
[call site]
03787
cram_free_compression_header
[function]
[call site]
03788
sam_hrecs_sort_order
[function]
[call site]
03789
TYPEKEY
[function]
[call site]
03790
kh_get_sam_hrecs_t
[function]
[call site]
03791
strcmp
[call site]
03792
strcmp
[call site]
03793
strcmp
[call site]
03794
strcmp
[call site]
03795
hts_log
[function]
[call site]
03796
pthread_mutex_lock
[call site]
03797
pthread_mutex_unlock
[call site]
03798
cram_free_slice
[function]
[call site]
03799
cram_free_container
[function]
[call site]
03800
cram_read_container
[function]
[call site]
03801
cram_free_container
[function]
[call site]
03802
cram_free_container
[function]
[call site]
03803
cram_free_container
[function]
[call site]
03804
cram_free_container
[function]
[call site]
03805
hseek
[function]
[call site]
03806
cram_read_block
[function]
[call site]
03807
cram_decode_compression_header
[function]
[call site]
03808
sam_hrecs_sort_order
[function]
[call site]
03809
pthread_mutex_lock
[call site]
03810
pthread_mutex_unlock
[call site]
03811
cram_free_container
[function]
[call site]
03812
cram_read_slice
[function]
[call site]
03813
cram_read_block
[function]
[call site]
03814
calloc
[call site]
03815
cram_decode_slice_header
[function]
[call site]
03816
cram_uncompress_block
[function]
[call site]
03817
calloc
[call site]
03818
hts_log
[function]
[call site]
03819
hts_malloc_p
[function]
[call site]
03820
cram_content_type2str
[function]
[call site]
03821
hts_log
[function]
[call site]
03822
hts_log
[function]
[call site]
03823
calloc
[call site]
03824
cram_read_block
[function]
[call site]
03825
calloc
[call site]
03826
hts_malloc_p
[function]
[call site]
03827
cram_new_block
[function]
[call site]
03828
cram_new_block
[function]
[call site]
03829
cram_new_block
[function]
[call site]
03830
cram_new_block
[function]
[call site]
03831
cram_new_block
[function]
[call site]
03832
cram_new_block
[function]
[call site]
03833
cram_free_block
[function]
[call site]
03834
cram_free_slice
[function]
[call site]
03835
cram_free_slice
[function]
[call site]
03836
cram_free_slice
[function]
[call site]
03837
cram_free_slice
[function]
[call site]
03838
cram_decode_slice_mt
[function]
[call site]
03839
cram_decode_slice
[function]
[call site]
03840
hts_tpool_process_sz
[function]
[call site]
03841
pthread_mutex_lock
[call site]
03842
pthread_mutex_unlock
[call site]
03843
__errno_location
[call site]
03844
__errno_location
[call site]
03845
hts_tpool_dispatch2
[function]
[call site]
03846
cram_decode_slice_thread
[function]
[call site]
03847
cram_decode_slice
[function]
[call site]
03848
__errno_location
[call site]
03849
__errno_location
[call site]
03850
hts_log
[function]
[call site]
03851
cram_free_slice
[function]
[call site]
03852
hts_tpool_process_len
[function]
[call site]
03853
pthread_mutex_lock
[call site]
03854
pthread_mutex_unlock
[call site]
03855
hts_tpool_process_qsize
[function]
[call site]
03856
hts_tpool_process_empty
[function]
[call site]
03857
hts_tpool_next_result_wait
[function]
[call site]
03858
hts_tpool_result_data
[function]
[call site]
03859
hts_log
[function]
[call site]
03860
hts_tpool_result_data
[function]
[call site]
03861
hts_log
[function]
[call site]
03862
hts_tpool_delete_result
[function]
[call site]
03863
hts_tpool_delete_result
[function]
[call site]
03864
cram_free_slice
[function]
[call site]
03865
cram_free_slice
[function]
[call site]
03866
bam_get_mempolicy
[function]
[call site]
03867
bam_copy1
[function]
[call site]
03868
realloc_bam_data
[function]
[call site]
03869
bam_set_mempolicy
[function]
[call site]
03870
cram_to_bam
[function]
[call site]
03871
cram_eof
[function]
[call site]
03872
sam_read1_sam
[function]
[call site]
03873
sam_parse1
[function]
[call site]
03874
strchr
[call site]
03875
hts_log
[function]
[call site]
03876
hts_log
[function]
[call site]
03877
possibly_expand_bam_data
[function]
[call site]
03878
parse_sam_flag
[function]
[call site]
03879
hts_str2uint
[function]
[call site]
03880
strtoul
[call site]
03881
strchr
[call site]
03882
strcmp
[call site]
03883
hts_log
[function]
[call site]
03884
bam_name2id
[function]
[call site]
03885
sam_hdr_name2tid
[function]
[call site]
03886
sam_hdr_fill_hrecs
[function]
[call site]
03887
kh_get_m_s2i
[function]
[call site]
03888
hts_log
[function]
[call site]
03889
hts_strprint
[function]
[call site]
03890
isprint_c
[function]
[call site]
03891
__ctype_b_loc
[call site]
03892
strcpy
[call site]
03893
snprintf
[call site]
03894
hts_log
[function]
[call site]
03895
hts_str2uint
[function]
[call site]
03896
hts_log
[function]
[call site]
03897
hts_str2uint
[function]
[call site]
03898
bam_parse_cigar
[function]
[call site]
03899
hts_log
[function]
[call site]
03900
read_ncigar
[function]
[call site]
03901
isdigit_c
[function]
[call site]
03902
hts_log
[function]
[call site]
03903
hts_log
[function]
[call site]
03904
possibly_expand_bam_data
[function]
[call site]
03905
hts_log
[function]
[call site]
03906
parse_cigar
[function]
[call site]
03907
hts_str2uint
[function]
[call site]
03908
hts_log
[function]
[call site]
03909
hts_log
[function]
[call site]
03910
hts_log
[function]
[call site]
03911
bam_cigar2rlen
[function]
[call site]
03912
hts_log
[function]
[call site]
03913
strchr
[call site]
03914
hts_log
[function]
[call site]
03915
hts_reg2bin
[function]
[call site]
03916
strchr
[call site]
03917
strcmp
[call site]
03918
strcmp
[call site]
03919
bam_name2id
[function]
[call site]
03920
hts_log
[function]
[call site]
03921
hts_strprint
[function]
[call site]
03922
hts_log
[function]
[call site]
03923
hts_str2uint
[function]
[call site]
03924
hts_log
[function]
[call site]
03925
hts_str2int
[function]
[call site]
03926
hts_log
[function]
[call site]
03927
strchr
[call site]
03928
strcmp
[call site]
03929
hts_log
[function]
[call site]
03930
bam_cigar2qlen
[function]
[call site]
03931
hts_log
[function]
[call site]
03932
possibly_expand_bam_data
[function]
[call site]
03933
possibly_expand_bam_data
[function]
[call site]
03934
hts_log
[function]
[call site]
03935
aux_parse
[function]
[call site]
03936
isspace_c
[function]
[call site]
03937
isspace_c
[function]
[call site]
03938
isspace_c
[function]
[call site]
03939
kh_get_tag
[function]
[call site]
03940
possibly_expand_bam_data
[function]
[call site]
03941
isspace_c
[function]
[call site]
03942
hts_log
[function]
[call site]
03943
possibly_expand_bam_data
[function]
[call site]
03944
hts_str2int
[function]
[call site]
03945
i16_to_le
[function]
[call site]
03946
u16_to_le
[function]
[call site]
03947
i32_to_le
[function]
[call site]
03948
u32_to_le
[function]
[call site]
03949
hts_str2uint
[function]
[call site]
03950
u16_to_le
[function]
[call site]
03951
u32_to_le
[function]
[call site]
03952
strtod
[call site]
03953
float_to_le
[function]
[call site]
03954
u32_to_le
[function]
[call site]
03955
strtod
[call site]
03956
double_to_le
[function]
[call site]
03957
u64_to_le
[function]
[call site]
03958
strchr
[call site]
03959
strlen
[call site]
03960
isspace_c
[function]
[call site]
03961
hts_log
[function]
[call site]
03962
possibly_expand_bam_data
[function]
[call site]
03963
isspace_c
[function]
[call site]
03964
hts_log
[function]
[call site]
03965
sam_parse_B_vals
[function]
[call site]
03966
sam_parse_B_vals_r
[function]
[call site]
03967
hts_log
[function]
[call site]
03968
aux_type2size
[function]
[call site]
03969
hts_log
[function]
[call site]
03970
possibly_expand_bam_data
[function]
[call site]
03971
hts_log
[function]
[call site]
03972
sam_parse_Bc_vals
[function]
[call site]
03973
grow_B_array
[function]
[call site]
03974
__errno_location
[call site]
03975
possibly_expand_bam_data
[function]
[call site]
03976
hts_log
[function]
[call site]
03977
hts_str2int
[function]
[call site]
03978
sam_parse_BC_vals
[function]
[call site]
03979
grow_B_array
[function]
[call site]
03980
hts_str2uint
[function]
[call site]
03981
sam_parse_Bs_vals
[function]
[call site]
03982
grow_B_array
[function]
[call site]
03983
hts_str2int
[function]
[call site]
03984
i16_to_le
[function]
[call site]
03985
sam_parse_BS_vals
[function]
[call site]
03986
grow_B_array
[function]
[call site]
03987
hts_str2uint
[function]
[call site]
03988
u16_to_le
[function]
[call site]
03989
sam_parse_Bi_vals
[function]
[call site]
03990
grow_B_array
[function]
[call site]
03991
hts_str2int
[function]
[call site]
03992
i32_to_le
[function]
[call site]
03993
sam_parse_BI_vals
[function]
[call site]
03994
grow_B_array
[function]
[call site]
03995
hts_str2uint
[function]
[call site]
03996
u32_to_le
[function]
[call site]
03997
sam_parse_Bf_vals
[function]
[call site]
03998
grow_B_array
[function]
[call site]
03999
strtod
[call site]
04000
float_to_le
[function]
[call site]
04001
hts_log
[function]
[call site]
04002
i32_to_le
[function]
[call site]
04003
hts_str2int
[function]
[call site]
04004
sam_parse_B_vals_r
[function]
[call site]
04005
sam_parse_B_vals_r
[function]
[call site]
04006
sam_parse_B_vals_r
[function]
[call site]
04007
sam_parse_B_vals_r
[function]
[call site]
04008
sam_parse_B_vals_r
[function]
[call site]
04009
sam_parse_B_vals_r
[function]
[call site]
04010
hts_log
[function]
[call site]
04011
isspace_c
[function]
[call site]
04012
hts_strprint
[function]
[call site]
04013
hts_log
[function]
[call site]
04014
isspace_c
[function]
[call site]
04015
hts_log
[function]
[call site]
04016
bam_tag2cigar
[function]
[call site]
04017
sam_state_destroy
[function]
[call site]
04018
__errno_location
[call site]
04019
bgzf_seek
[function]
[call site]
04020
bgzf_seek_common
[function]
[call site]
04021
sam_hdr_fill_hrecs
[function]
[call site]
04022
pthread_create
[call site]
04023
sam_dispatcher_read
[function]
[call site]
04024
ks_resize
[function]
[call site]
04025
pthread_mutex_lock
[call site]
04026
pthread_cond_signal
[call site]
04027
pthread_mutex_unlock
[call site]
04028
hts_tpool_process_shutdown
[function]
[call site]
04029
pthread_mutex_unlock
[call site]
04030
pthread_mutex_lock
[call site]
04031
pthread_mutex_unlock
[call site]
04032
calloc
[call site]
04033
hts_malloc_ps
[function]
[call site]
04034
hts_realloc_ps
[function]
[call site]
04035
hts_add_sat2
[function]
[call site]
04036
hts_prod_sat2
[function]
[call site]
04037
hts_realloc
[function]
[call site]
04038
bgzf_read
[function]
[call site]
04039
hread
[function]
[call site]
04040
__errno_location
[call site]
04041
sam_state_err
[function]
[call site]
04042
hts_realloc_pse
[function]
[call site]
04043
hts_add_sat2
[function]
[call site]
04044
hts_prod_sat2
[function]
[call site]
04045
hts_add_sat2
[function]
[call site]
04046
hts_realloc
[function]
[call site]
04047
__assert_fail
[call site]
04048
__assert_fail
[call site]
04049
__assert_fail
[call site]
04050
ks_resize
[function]
[call site]
04051
hts_tpool_dispatch3
[function]
[call site]
04052
sam_parse_worker
[function]
[call site]
04053
pthread_mutex_lock
[call site]
04054
pthread_mutex_unlock
[call site]
04055
calloc
[call site]
04056
calloc
[call site]
04057
sam_state_err
[function]
[call site]
04058
sam_state_err
[function]
[call site]
04059
hts_realloc_p
[function]
[call site]
04060
sam_state_err
[function]
[call site]
04061
strchr
[call site]
04062
sam_parse1
[function]
[call site]
04063
__errno_location
[call site]
04064
sam_state_err
[function]
[call site]
04065
cleanup_sp_lines
[function]
[call site]
04066
__assert_fail
[call site]
04067
sam_free_sp_bams
[function]
[call site]
04068
pthread_mutex_lock
[call site]
04069
pthread_mutex_unlock
[call site]
04070
sam_free_sp_bams
[function]
[call site]
04071
cleanup_sp_lines
[function]
[call site]
04072
cleanup_sp_bams
[function]
[call site]
04073
sam_free_sp_bams
[function]
[call site]
04074
pthread_mutex_lock
[call site]
04075
pthread_mutex_unlock
[call site]
04076
pthread_mutex_unlock
[call site]
04077
hts_tpool_dispatch
[function]
[call site]
04078
sam_parse_eof
[function]
[call site]
04079
pthread_mutex_lock
[call site]
04080
pthread_cond_wait
[call site]
04081
pthread_cond_signal
[call site]
04082
pthread_mutex_unlock
[call site]
04083
hts_tpool_process_shutdown
[function]
[call site]
04084
pthread_mutex_unlock
[call site]
04085
pthread_mutex_lock
[call site]
04086
pthread_cond_signal
[call site]
04087
pthread_mutex_unlock
[call site]
04088
pthread_mutex_lock
[call site]
04089
pthread_mutex_unlock
[call site]
04090
__errno_location
[call site]
04091
sam_state_err
[function]
[call site]
04092
hts_tpool_process_shutdown
[function]
[call site]
04093
hts_log
[function]
[call site]
04094
__errno_location
[call site]
04095
pthread_mutex_lock
[call site]
04096
pthread_mutex_unlock
[call site]
04097
hts_tpool_next_result_wait
[function]
[call site]
04098
hts_tpool_result_data
[function]
[call site]
04099
hts_tpool_delete_result
[function]
[call site]
04100
pthread_mutex_lock
[call site]
04101
pthread_mutex_unlock
[call site]
04102
bam_copy1
[function]
[call site]
04103
pthread_mutex_lock
[call site]
04104
pthread_mutex_unlock
[call site]
04105
hts_getline
[function]
[call site]
04106
sam_parse1
[function]
[call site]
04107
hts_log
[function]
[call site]
04108
fastq_state_init
[function]
[call site]
04109
fastq_parse1
[function]
[call site]
04110
hts_getline
[function]
[call site]
04111
strpbrk
[call site]
04112
isspace_c
[function]
[call site]
04113
isspace_c
[function]
[call site]
04114
hts_getline
[function]
[call site]
04115
kputsn
[function]
[call site]
04116
hts_getline
[function]
[call site]
04117
kputsn
[function]
[call site]
04118
isdigit_c
[function]
[call site]
04119
regexec
[call site]
04120
hts_log
[function]
[call site]
04121
isalpha_c
[function]
[call site]
04122
bam_set1
[function]
[call site]
04123
bam_aux_append
[function]
[call site]
04124
__assert_fail
[call site]
04125
realloc_bam_data
[function]
[call site]
04126
__errno_location
[call site]
04127
isdigit_c
[function]
[call site]
04128
strtol
[call site]
04129
isdigit_c
[function]
[call site]
04130
isspace_c
[function]
[call site]
04131
bam_aux_append
[function]
[call site]
04132
aux_parse
[function]
[call site]
04133
__errno_location
[call site]
04134
__errno_location
[call site]
04135
sam_passes_filter
[function]
[call site]
04136
hts_filter_eval2
[function]
[call site]
04137
ks_free
[function]
[call site]
04138
hts_filter_eval_
[function]
[call site]
04139
expression
[function]
[call site]
04140
hts_log
[function]
[call site]
04141
hts_expr_val_undef
[function]
[call site]
04142
ks_clear
[function]
[call site]
04143
and_expr
[function]
[call site]
04144
eq_expr
[function]
[call site]
04145
cmp_expr
[function]
[call site]
04146
bitor_expr
[function]
[call site]
04147
bitxor_expr
[function]
[call site]
04148
bitand_expr
[function]
[call site]
04149
add_expr
[function]
[call site]
04150
mul_expr
[function]
[call site]
04151
unary_expr
[function]
[call site]
04152
ws
[function]
[call site]
04153
simple_expr
[function]
[call site]
04154
ws
[function]
[call site]
04155
expression
[function]
[call site]
04156
ws
[function]
[call site]
04157
fprintf
[call site]
04158
hts_str2dbl
[function]
[call site]
04159
ks_clear
[function]
[call site]
04163
kputsn
[function]
[call site]
04164
func_expr
[function]
[call site]
04165
strncmp
[call site]
04166
expression
[function]
[call site]
04167
expr_func_avg
[function]
[call site]
04168
strncmp
[call site]
04169
expression
[function]
[call site]
04170
ws
[function]
[call site]
04171
expression
[function]
[call site]
04172
hts_expr_val_free
[function]
[call site]
04173
ks_free
[function]
[call site]
04174
hts_expr_val_existsT
[function]
[call site]
04175
hts_expr_val_exists
[function]
[call site]
04176
hts_expr_val_free
[function]
[call site]
04177
strncmp
[call site]
04178
expression
[function]
[call site]
04179
hts_expr_val_existsT
[function]
[call site]
04180
strncmp
[call site]
04181
expression
[function]
[call site]
04182
exp
[call site]
04183
hts_expr_val_undef
[function]
[call site]
04184
strncmp
[call site]
04185
expression
[function]
[call site]
04186
expr_func_length
[function]
[call site]
04187
strncmp
[call site]
04188
expression
[function]
[call site]
04189
log
[call site]
04190
hts_expr_val_undef
[function]
[call site]
04191
strncmp
[call site]
04192
expression
[function]
[call site]
04193
expr_func_min
[function]
[call site]
04194
strncmp
[call site]
04195
expression
[function]
[call site]
04196
expr_func_max
[function]
[call site]
04197
strncmp
[call site]
04198
expression
[function]
[call site]
04199
ws
[function]
[call site]
04200
expression
[function]
[call site]
04201
hts_expr_val_free
[function]
[call site]
04202
hts_expr_val_exists
[function]
[call site]
04203
hts_expr_val_undef
[function]
[call site]
04204
hts_expr_val_free
[function]
[call site]
04205
hts_expr_val_free
[function]
[call site]
04206
pow
[call site]
04207
hts_expr_val_free
[function]
[call site]
04208
hts_expr_val_undef
[function]
[call site]
04209
strncmp
[call site]
04210
expression
[function]
[call site]
04211
sqrt
[call site]
04212
hts_expr_val_undef
[function]
[call site]
04213
ws
[function]
[call site]
04214
fprintf
[call site]
04215
hts_expr_val_exists
[function]
[call site]
04216
hts_expr_val_undef
[function]
[call site]
04217
unary_expr
[function]
[call site]
04218
hts_expr_val_exists
[function]
[call site]
04219
IS_VALID
[function]
[call site]
04220
hts_expr_val_undef
[function]
[call site]
04221
unary_expr
[function]
[call site]
04222
hts_expr_val_exists
[function]
[call site]
04223
hts_expr_val_undef
[function]
[call site]
04224
hts_expr_val_exists
[function]
[call site]
04225
hts_expr_val_undef
[function]
[call site]
04226
IS_VALID
[function]
[call site]
04227
hts_expr_val_undef
[function]
[call site]
04228
simple_expr
[function]
[call site]
04229
ws
[function]
[call site]
04230
unary_expr
[function]
[call site]
04231
hts_expr_val_free
[function]
[call site]
04232
hts_expr_val_exists
[function]
[call site]
04233
hts_expr_val_undef
[function]
[call site]
04234
hts_expr_val_free
[function]
[call site]
04235
IS_VALID
[function]
[call site]
04236
hts_expr_val_undef
[function]
[call site]
04237
hts_expr_val_exists
[function]
[call site]
04238
hts_expr_val_free
[function]
[call site]
04239
ws
[function]
[call site]
04240
mul_expr
[function]
[call site]
04241
hts_expr_val_free
[function]
[call site]
04242
hts_expr_val_exists
[function]
[call site]
04243
hts_expr_val_free
[function]
[call site]
04244
hts_expr_val_undef
[function]
[call site]
04245
hts_expr_val_free
[function]
[call site]
04246
ws
[function]
[call site]
04247
add_expr
[function]
[call site]
04248
hts_expr_val_free
[function]
[call site]
04249
hts_expr_val_exists
[function]
[call site]
04250
hts_expr_val_free
[function]
[call site]
04251
IS_VALID
[function]
[call site]
04252
hts_expr_val_undef
[function]
[call site]
04253
hts_expr_val_free
[function]
[call site]
04254
hts_expr_val_free
[function]
[call site]
04255
hts_expr_val_undef
[function]
[call site]
04256
ws
[function]
[call site]
04257
bitand_expr
[function]
[call site]
04258
hts_expr_val_free
[function]
[call site]
04259
hts_expr_val_exists
[function]
[call site]
04260
hts_expr_val_free
[function]
[call site]
04261
IS_VALID
[function]
[call site]
04262
hts_expr_val_undef
[function]
[call site]
04263
hts_expr_val_free
[function]
[call site]
04264
hts_expr_val_free
[function]
[call site]
04265
hts_expr_val_undef
[function]
[call site]
04266
ws
[function]
[call site]
04267
bitxor_expr
[function]
[call site]
04268
hts_expr_val_free
[function]
[call site]
04269
hts_expr_val_exists
[function]
[call site]
04270
hts_expr_val_free
[function]
[call site]
04271
IS_VALID
[function]
[call site]
04272
hts_expr_val_undef
[function]
[call site]
04273
hts_expr_val_free
[function]
[call site]
04274
hts_expr_val_free
[function]
[call site]
04275
hts_expr_val_undef
[function]
[call site]
04276
ws
[function]
[call site]
04277
cmp_expr
[function]
[call site]
04278
hts_expr_val_exists
[function]
[call site]
04279
hts_expr_val_undef
[function]
[call site]
04280
strcmp
[call site]
04281
cmp_expr
[function]
[call site]
04282
hts_expr_val_exists
[function]
[call site]
04283
hts_expr_val_undef
[function]
[call site]
04284
strcmp
[call site]
04285
cmp_expr
[function]
[call site]
04286
hts_expr_val_exists
[function]
[call site]
04287
hts_expr_val_undef
[function]
[call site]
04288
strcmp
[call site]
04289
cmp_expr
[function]
[call site]
04290
hts_expr_val_exists
[function]
[call site]
04291
hts_expr_val_undef
[function]
[call site]
04292
strcmp
[call site]
04293
hts_expr_val_exists
[function]
[call site]
04294
hts_expr_val_undef
[function]
[call site]
04295
hts_expr_val_free
[function]
[call site]
04296
ws
[function]
[call site]
04297
eq_expr
[function]
[call site]
04298
hts_expr_val_exists
[function]
[call site]
04299
hts_expr_val_undef
[function]
[call site]
04300
strcmp
[call site]
04301
eq_expr
[function]
[call site]
04302
hts_expr_val_exists
[function]
[call site]
04303
hts_expr_val_undef
[function]
[call site]
04304
strcmp
[call site]
04305
eq_expr
[function]
[call site]
04306
hts_expr_val_free
[function]
[call site]
04307
regcomp
[call site]
04308
regerror
[call site]
04309
fprintf
[call site]
04310
hts_expr_val_undef
[function]
[call site]
04311
hts_expr_val_free
[function]
[call site]
04312
regexec
[call site]
04313
regfree
[call site]
04314
hts_expr_val_exists
[function]
[call site]
04315
hts_expr_val_undef
[function]
[call site]
04316
hts_expr_val_free
[function]
[call site]
04317
ws
[function]
[call site]
04318
eq_expr
[function]
[call site]
04319
hts_expr_val_free
[function]
[call site]
04320
hts_expr_val_existsT
[function]
[call site]
04321
hts_expr_val_undef
[function]
[call site]
04322
eq_expr
[function]
[call site]
04323
hts_expr_val_free
[function]
[call site]
04324
hts_expr_val_existsT
[function]
[call site]
04325
hts_expr_val_undef
[function]
[call site]
04326
hts_expr_val_existsT
[function]
[call site]
04327
hts_expr_val_undef
[function]
[call site]
04328
hts_expr_val_existsT
[function]
[call site]
04329
hts_expr_val_undef
[function]
[call site]
04330
hts_expr_val_free
[function]
[call site]
04331
ws
[function]
[call site]
04332
fprintf
[call site]
04333
hts_expr_val_exists
[function]
[call site]
04334
bam_sym_lookup
[function]
[call site]
04335
memcmp
[call site]
04336
ks_clear
[function]
[call site]
04337
kputw
[function]
[call site]
04338
kputc_
[function]
[call site]
04339
kputs
[function]
[call site]
04340
kputs
[function]
[call site]
04341
memcmp
[call site]
04342
bam_endpos
[function]
[call site]
04343
memcmp
[call site]
04344
memcmp
[call site]
04345
memcmp
[call site]
04346
memcmp
[call site]
04347
memcmp
[call site]
04348
memcmp
[call site]
04349
memcmp
[call site]
04350
memcmp
[call site]
04351
memcmp
[call site]
04352
memcmp
[call site]
04353
memcmp
[call site]
04354
memcmp
[call site]
04355
memcmp
[call site]
04356
hts_log
[function]
[call site]
04357
memcmp
[call site]
04358
memcmp
[call site]
04359
bam_get_library
[function]
[call site]
04360
bam_aux_get
[function]
[call site]
04361
sam_hdr_find_tag_id
[function]
[call site]
04362
ks_clear
[function]
[call site]
04363
kputs
[function]
[call site]
04364
memcmp
[call site]
04365
memcmp
[call site]
04366
memcmp
[call site]
04367
sam_hdr_tid2name
[function]
[call site]
04368
ks_clear
[function]
[call site]
04369
kputs
[function]
[call site]
04370
memcmp
[call site]
04371
memcmp
[call site]
04372
memcmp
[call site]
04373
memcmp
[call site]
04374
memcmp
[call site]
04375
bam_cigar2qlen
[function]
[call site]
04376
memcmp
[call site]
04377
ks_clear
[function]
[call site]
04378
kputs
[function]
[call site]
04379
memcmp
[call site]
04380
ks_clear
[function]
[call site]
04381
ks_resize
[function]
[call site]
04382
memcmp
[call site]
04383
bam_cigar2rlen
[function]
[call site]
04384
memcmp
[call site]
04385
sam_hdr_tid2name
[function]
[call site]
04386
ks_clear
[function]
[call site]
04387
kputs
[function]
[call site]
04388
memcmp
[call site]
04389
sam_hdr_tid2name
[function]
[call site]
04390
ks_clear
[function]
[call site]
04391
kputs
[function]
[call site]
04392
memcmp
[call site]
04393
memcmp
[call site]
04394
ks_clear
[function]
[call site]
04395
ks_resize
[function]
[call site]
04396
nibble2base
[function]
[call site]
04397
memcmp
[call site]
04398
memcmp
[call site]
04399
bam_aux_get
[function]
[call site]
04400
ks_clear
[function]
[call site]
04401
kputs
[function]
[call site]
04402
ks_clear
[function]
[call site]
04403
kputsn
[function]
[call site]
04404
bam_aux2i
[function]
[call site]
04405
get_int_aux_val
[function]
[call site]
04406
le_to_i8
[function]
[call site]
04407
le_to_i16
[function]
[call site]
04408
le_to_u16
[function]
[call site]
04409
le_to_i32
[function]
[call site]
04410
le_to_u32
[function]
[call site]
04411
__errno_location
[call site]
04412
bam_aux2f
[function]
[call site]
04413
le_to_double
[function]
[call site]
04414
le_to_float
[function]
[call site]
04415
get_int_aux_val
[function]
[call site]
04416
hts_log
[function]
[call site]
04417
hts_log
[function]
[call site]
04418
hts_expr_val_free
[function]
[call site]
04419
hts_expr_val_free
[function]
[call site]
04420
sam_write1
[function]
[call site]
04421
bam_write_idx1
[function]
[call site]
04422
bam_write1
[function]
[call site]
04423
__errno_location
[call site]
04424
hts_log
[function]
[call site]
04425
bgzf_flush_try
[function]
[call site]
04426
lazy_flush
[function]
[call site]
04427
ed_swap_4p
[function]
[call site]
04428
ed_swap_4p
[function]
[call site]
04429
bgzf_write_small
[function]
[call site]
04430
bgzf_write
[function]
[call site]
04431
swap_data
[function]
[call site]
04432
bgzf_write_small
[function]
[call site]
04433
bgzf_write_small
[function]
[call site]
04434
bgzf_write_small
[function]
[call site]
04435
bgzf_write_small
[function]
[call site]
04436
bam_cigar2rlen
[function]
[call site]
04437
hts_log
[function]
[call site]
04438
u32_to_le
[function]
[call site]
04439
u32_to_le
[function]
[call site]
04440
bgzf_write_small
[function]
[call site]
04441
bgzf_write_small
[function]
[call site]
04442
bgzf_write_small
[function]
[call site]
04443
u32_to_le
[function]
[call site]
04444
bgzf_write_small
[function]
[call site]
04445
bgzf_write_small
[function]
[call site]
04446
swap_data
[function]
[call site]
04447
bgzf_flush_try
[function]
[call site]
04448
hts_idx_amend_last
[function]
[call site]
04449
bam_write1
[function]
[call site]
04450
bam_endpos
[function]
[call site]
04451
bgzf_idx_push
[function]
[call site]
04452
hts_idx_push
[function]
[call site]
04453
hts_idx_check_range
[function]
[call site]
04454
hts_idx_maxpos
[function]
[call site]
04455
hts_bin_maxpos
[function]
[call site]
04456
hts_log
[function]
[call site]
04457
idx_format_name
[function]
[call site]
04458
hts_log
[function]
[call site]
04459
__errno_location
[call site]
04460
hts_realloc_p
[function]
[call site]
04461
hts_realloc_p
[function]
[call site]
04462
hts_log
[function]
[call site]
04463
hts_log
[function]
[call site]
04464
hts_log
[function]
[call site]
04465
hts_log
[function]
[call site]
04466
kh_init_bin
[function]
[call site]
04467
calloc
[call site]
04468
insert_to_l
[function]
[call site]
04469
hts_realloc_p
[function]
[call site]
04470
hts_reg2bin
[function]
[call site]
04471
insert_to_b
[function]
[call site]
04472
kh_put_bin
[function]
[call site]
04473
kh_resize_bin
[function]
[call site]
04474
__errno_location
[call site]
04475
realloc
[call site]
04476
calloc
[call site]
04477
kh_del_bin
[function]
[call site]
04478
hts_realloc_p
[function]
[call site]
04479
insert_to_b
[function]
[call site]
04480
insert_to_b
[function]
[call site]
04481
hts_idx_check_range
[function]
[call site]
04482
pthread_mutex_lock
[call site]
04483
hts_realloc_p
[function]
[call site]
04484
pthread_mutex_unlock
[call site]
04485
pthread_mutex_unlock
[call site]
04486
sam_hdr_tid2name
[function]
[call site]
04487
sam_hdr_tid2len
[function]
[call site]
04488
kh_get_s2i
[function]
[call site]
04489
hts_log
[function]
[call site]
04490
cram_put_bam_seq
[function]
[call site]
04491
cram_new_container
[function]
[call site]
04492
pthread_mutex_lock
[call site]
04493
pthread_mutex_unlock
[call site]
04494
hts_log
[function]
[call site]
04495
pthread_mutex_lock
[call site]
04496
hts_log
[function]
[call site]
04497
pthread_mutex_unlock
[call site]
04498
cram_next_container
[function]
[call site]
04499
cram_update_curr_slice
[function]
[call site]
04500
cram_flush_container_mt
[function]
[call site]
04501
cram_free_slice
[function]
[call site]
04502
cram_free_container
[function]
[call site]
04503
cram_new_container
[function]
[call site]
04504
pthread_mutex_lock
[call site]
04505
pthread_mutex_unlock
[call site]
04506
cram_new_slice
[function]
[call site]
04507
calloc
[call site]
04508
calloc
[call site]
04509
hts_malloc_p
[function]
[call site]
04510
hts_malloc_p
[function]
[call site]
04511
cram_new_block
[function]
[call site]
04512
cram_new_block
[function]
[call site]
04513
cram_new_block
[function]
[call site]
04514
cram_new_block
[function]
[call site]
04515
cram_new_block
[function]
[call site]
04516
cram_new_block
[function]
[call site]
04517
string_pool_create
[function]
[call site]
04518
kh_init_m_s2i
[function]
[call site]
04519
kh_init_m_s2i
[function]
[call site]
04520
cram_free_slice
[function]
[call site]
04521
pthread_mutex_lock
[call site]
04522
hts_log
[function]
[call site]
04523
pthread_mutex_unlock
[call site]
04524
pthread_mutex_lock
[call site]
04525
calloc
[call site]
04526
pthread_mutex_unlock
[call site]
04527
pthread_mutex_lock
[call site]
04528
calloc
[call site]
04529
pthread_mutex_unlock
[call site]
04530
pthread_mutex_lock
[call site]
04531
pthread_mutex_unlock
[call site]
04532
pthread_mutex_lock
[call site]
04533
hts_realloc_p
[function]
[call site]
04534
pthread_mutex_unlock
[call site]
04535
bam_set_mempolicy
[function]
[call site]
04536
calloc
[call site]
04537
pthread_mutex_unlock
[call site]
04538
bam_set_mempolicy
[function]
[call site]
04539
pthread_mutex_unlock
[call site]
04540
bam_copy1
[function]
[call site]
04541
bam_cigar2qlen
[function]
[call site]
04542
hts_log
[function]
[call site]
04543
pthread_create
[call site]
04544
sam_dispatcher_write
[function]
[call site]
04545
hts_tpool_next_result_wait
[function]
[call site]
04546
hts_tpool_result_data
[function]
[call site]
04547
sam_state_err
[function]
[call site]
04548
bgzf_flush_try
[function]
[call site]
04549
bgzf_write
[function]
[call site]
04550
hwrite
[function]
[call site]
04551
bam_endpos
[function]
[call site]
04552
bgzf_idx_push
[function]
[call site]
04553
__errno_location
[call site]
04554
sam_state_err
[function]
[call site]
04555
sam_hdr_tid2name
[function]
[call site]
04556
sam_hdr_tid2len
[function]
[call site]
04557
hts_log
[function]
[call site]
04558
bam_endpos
[function]
[call site]
04559
hts_idx_push
[function]
[call site]
04560
__errno_location
[call site]
04561
sam_state_err
[function]
[call site]
04562
sam_hdr_tid2name
[function]
[call site]
04563
sam_hdr_tid2len
[function]
[call site]
04564
hts_log
[function]
[call site]
04565
__assert_fail
[call site]
04566
pthread_mutex_lock
[call site]
04567
pthread_mutex_unlock
[call site]
04568
bgzf_write
[function]
[call site]
04569
bgzf_flush_try
[function]
[call site]
04570
bgzf_write
[function]
[call site]
04571
hwrite
[function]
[call site]
04572
hts_tpool_delete_result
[function]
[call site]
04573
pthread_mutex_lock
[call site]
04574
pthread_mutex_unlock
[call site]
04575
sam_state_err
[function]
[call site]
04576
hts_tpool_process_shutdown
[function]
[call site]
04577
__errno_location
[call site]
04578
sam_state_err
[function]
[call site]
04579
hts_log
[function]
[call site]
04580
pthread_mutex_lock
[call site]
04581
pthread_mutex_unlock
[call site]
04582
pthread_mutex_unlock
[call site]
04583
calloc
[call site]
04584
calloc
[call site]
04585
bam_copy1
[function]
[call site]
04586
pthread_mutex_lock
[call site]
04587
pthread_mutex_unlock
[call site]
04588
hts_tpool_dispatch3
[function]
[call site]
04589
sam_format_worker
[function]
[call site]
04590
cleanup_sp_bams
[function]
[call site]
04591
cleanup_sp_lines
[function]
[call site]
04592
pthread_mutex_unlock
[call site]
04593
pthread_mutex_unlock
[call site]
04594
sam_format1
[function]
[call site]
04595
sam_format1_append
[function]
[call site]
04596
kputc
[function]
[call site]
04597
bgzf_flush_try
[function]
[call site]
04598
bgzf_write
[function]
[call site]
04599
hwrite
[function]
[call site]
04600
bam_endpos
[function]
[call site]
04601
bgzf_idx_push
[function]
[call site]
04602
sam_hdr_tid2name
[function]
[call site]
04603
sam_hdr_tid2len
[function]
[call site]
04604
hts_log
[function]
[call site]
04605
bam_endpos
[function]
[call site]
04606
hts_idx_push
[function]
[call site]
04607
sam_hdr_tid2name
[function]
[call site]
04608
sam_hdr_tid2len
[function]
[call site]
04609
hts_log
[function]
[call site]
04610
fastq_state_init
[function]
[call site]
04611
fastq_format1
[function]
[call site]
04612
kputc
[function]
[call site]
04613
kputs
[function]
[call site]
04614
bam_aux_get
[function]
[call site]
04615
kputc
[function]
[call site]
04616
isalpha_c
[function]
[call site]
04617
toupper_c
[function]
[call site]
04618
kputc
[function]
[call site]
04619
kputs
[function]
[call site]
04620
kputs
[function]
[call site]
04621
kputs
[function]
[call site]
04622
bam_aux_get
[function]
[call site]
04623
ksprintf
[function]
[call site]
04624
isupper_c
[function]
[call site]
04625
__ctype_b_loc
[call site]
04626
islower_c
[function]
[call site]
04627
__ctype_b_loc
[call site]
04628
hts_log
[function]
[call site]
04629
strlen
[call site]
04630
strlen
[call site]
04631
isalpha_c
[function]
[call site]
04632
islower_c
[function]
[call site]
04633
toupper_c
[function]
[call site]
04634
kh_get_tag
[function]
[call site]
04635
kputc_
[function]
[call site]
04636
sam_format_aux1
[function]
[call site]
04637
skip_aux
[function]
[call site]
04638
kputsn
[function]
[call site]
04639
ks_resize
[function]
[call site]
04640
kputc_
[function]
[call site]
04641
kputc_
[function]
[call site]
04642
kputc_
[function]
[call site]
04643
kputsn
[function]
[call site]
04644
kputc_
[function]
[call site]
04645
kputc_
[function]
[call site]
04646
kputc_
[function]
[call site]
04647
kputc
[function]
[call site]
04648
bgzf_flush_try
[function]
[call site]
04649
bgzf_write
[function]
[call site]
04650
hwrite
[function]
[call site]
04651
__errno_location
[call site]
04652
bam_destroy1
[function]
[call site]
04653
sam_hdr_destroy
[function]
[call site]
04654
hts_close_or_abort
[function]
[call site]
04655
hts_close
[function]
[call site]
04656
hts_close
[function]
[call site]
04657
view_sam
[function]
[call site]
04658
view_sam
[function]
[call site]
04659
view_vcf
[function]
[call site]
04660
abort
[call site]
04661
hopen
[function]
[call site]
04662
hts_hopen
[function]
[call site]
04663
hclose
[function]
[call site]
04664
abort
[call site]
04665
hts_open
[function]
[call site]
04666
abort
[call site]
04667
bcf_hdr_read
[function]
[call site]
04668
vcf_hdr_read
[function]
[call site]
04669
bcf_hdr_init
[function]
[call site]
04670
calloc
[call site]
04671
kh_init_vdict
[function]
[call site]
04672
calloc
[call site]
04673
kh_resize_vdict
[function]
[call site]
04674
__errno_location
[call site]
04675
realloc
[call site]
04676
__ac_FNV1a_hash_string
[function]
[call site]
04677
calloc
[call site]
04678
kh_init_hdict
[function]
[call site]
04679
strchr
[call site]
04680
bcf_hdr_append
[function]
[call site]
04681
bcf_hdr_parse_line
[function]
[call site]
04682
calloc
[call site]
04683
hts_malloc_ps
[function]
[call site]
04684
hts_malloc_p
[function]
[call site]
04685
isalpha_c
[function]
[call site]
04686
isalnum_c
[function]
[call site]
04687
bcf_hrec_add_key
[function]
[call site]
04688
__assert_fail
[call site]
04689
hts_realloc_p
[function]
[call site]
04690
hts_realloc_p
[function]
[call site]
04691
hts_malloc_ps
[function]
[call site]
04692
is_escaped
[function]
[call site]
04693
bcf_hrec_set_val
[function]
[call site]
04694
__errno_location
[call site]
04695
hts_malloc_ps
[function]
[call site]
04696
__errno_location
[call site]
04697
hts_malloc_ps
[function]
[call site]
04698
isspace_c
[function]
[call site]
04699
hts_strprint
[function]
[call site]
04700
hts_log
[function]
[call site]
04701
bcf_hrec_destroy
[function]
[call site]
04702
hts_strprint
[function]
[call site]
04703
hts_log
[function]
[call site]
04704
bcf_hrec_destroy
[function]
[call site]
04705
bcf_hdr_add_hrec
[function]
[call site]
04706
get_hdr_aux
[function]
[call site]
04707
bcf_hrec_check
[function]
[call site]
04708
bcf_hrec_set_type
[function]
[call site]
04709
strcmp
[call site]
04710
strcmp
[call site]
04711
strcmp
[call site]
04712
strcmp
[call site]
04713
bcf_hrec_find_key
[function]
[call site]
04714
strcasecmp
[call site]
04715
bcf_hrec_find_key
[function]
[call site]
04716
strcmp
[call site]
04717
bcf_hrec_find_key
[function]
[call site]
04718
hts_log
[function]
[call site]
04719
hts_log
[function]
[call site]
04720
hts_log
[function]
[call site]
04721
bcf_hdr_register_hrec
[function]
[call site]
04722
bcf_hrec_set_type
[function]
[call site]
04723
bcf_hdr_register_hrec_ctg
[function]
[call site]
04724
bcf_hrec_find_key
[function]
[call site]
04725
bcf_hrec_find_key
[function]
[call site]
04726
strtoll
[call site]
04727
hts_log
[function]
[call site]
04728
strdup
[call site]
04729
kh_get_vdict
[function]
[call site]
04730
strcmp
[call site]
04731
kh_put_vdict
[function]
[call site]
04732
kh_resize_vdict
[function]
[call site]
04733
bcf_hrec_find_key
[function]
[call site]
04734
strtol
[call site]
04735
kh_del_vdict
[function]
[call site]
04736
hts_log
[function]
[call site]
04737
bcf_hdr_set_idx
[function]
[call site]
04738
hts_log
[function]
[call site]
04739
__errno_location
[call site]
04740
hts_resize_array_
[function]
[call site]
04741
hts_log
[function]
[call site]
04742
__errno_location
[call site]
04743
realloc
[call site]
04744
__errno_location
[call site]
04745
__errno_location
[call site]
04746
strerror
[call site]
04747
hts_log
[function]
[call site]
04748
__errno_location
[call site]
04749
abort
[call site]
04750
abort
[call site]
04751
kh_del_vdict
[function]
[call site]
04752
hrec_add_idx
[function]
[call site]
04753
hts_realloc_p
[function]
[call site]
04754
hts_realloc_p
[function]
[call site]
04755
strdup
[call site]
04756
kputw
[function]
[call site]
04757
bcf_hdr_register_hrec_info
[function]
[call site]
04758
strcmp
[call site]
04759
strcmp
[call site]
04760
strtol
[call site]
04761
hts_log
[function]
[call site]
04762
strcmp
[call site]
04763
strcmp
[call site]
04764
strcmp
[call site]
04765
strcmp
[call site]
04766
strcmp
[call site]
04767
strcmp
[call site]
04768
hts_log
[function]
[call site]
04769
strcmp
[call site]
04770
strcmp
[call site]
04771
strcmp
[call site]
04772
strcmp
[call site]
04773
strcmp
[call site]
04774
strcmp
[call site]
04775
strcmp
[call site]
04776
strcmp
[call site]
04777
strcmp
[call site]
04778
strcmp
[call site]
04779
__isoc99_sscanf
[call site]
04780
hts_log
[function]
[call site]
04781
hts_log
[function]
[call site]
04782
hts_log
[function]
[call site]
04783
strdup
[call site]
04784
kh_get_vdict
[function]
[call site]
04785
strcmp
[call site]
04786
hrec_add_idx
[function]
[call site]
04787
hrec_add_idx
[function]
[call site]
04788
kh_put_vdict
[function]
[call site]
04789
bcf_hdr_set_idx
[function]
[call site]
04790
kh_del_vdict
[function]
[call site]
04791
hrec_add_idx
[function]
[call site]
04792
bcf_hrec_destroy
[function]
[call site]
04793
ksprintf
[function]
[call site]
04794
kh_get_hdict
[function]
[call site]
04795
bcf_hrec_destroy
[function]
[call site]
04796
bcf_get_version
[function]
[call site]
04797
get_hdr_aux
[function]
[call site]
04798
bcf_hdr_get_version
[function]
[call site]
04799
bcf_hdr_get_hrec
[function]
[call site]
04800
ksprintf
[function]
[call site]
04801
get_hdr_aux
[function]
[call site]
04802
kh_get_hdict
[function]
[call site]
04803
strcmp
[call site]
04804
strcmp
[call site]
04805
ksprintf
[function]
[call site]
04806
get_hdr_aux
[function]
[call site]
04807
kh_get_hdict
[function]
[call site]
04808
strcmp
[call site]
04809
bcf_hrec_find_key
[function]
[call site]
04810
strcmp
[call site]
04811
kh_get_vdict
[function]
[call site]
04812
hts_log
[function]
[call site]
04813
strstr
[call site]
04814
strchr
[call site]
04815
strtol
[call site]
04816
__errno_location
[call site]
04817
__errno_location
[call site]
04818
strtol
[call site]
04819
__errno_location
[call site]
04820
hts_log
[function]
[call site]
04821
bcf_hrec_find_key
[function]
[call site]
04822
ksprintf
[function]
[call site]
04823
kh_get_hdict
[function]
[call site]
04824
bcf_hrec_destroy
[function]
[call site]
04825
hts_realloc_p
[function]
[call site]
04826
bcf_hdr_unregister_hrec
[function]
[call site]
04827
bcf_hrec_find_key
[function]
[call site]
04828
kh_get_vdict
[function]
[call site]
04829
kh_put_hdict
[function]
[call site]
04830
kh_resize_hdict
[function]
[call site]
04831
bcf_hdr_append
[function]
[call site]
04832
kh_destroy_vdict
[function]
[call site]
04833
hts_log
[function]
[call site]
04834
hts_getline
[function]
[call site]
04835
hts_log
[function]
[call site]
04836
hopen
[function]
[call site]
04837
hts_log
[function]
[call site]
04838
khgetline
[function]
[call site]
04839
strchr
[call site]
04840
kputs
[function]
[call site]
04841
kputsn
[function]
[call site]
04842
kputs
[function]
[call site]
04843
atol
[call site]
04844
kputl
[function]
[call site]
04845
kputll
[function]
[call site]
04846
kputsn
[function]
[call site]
04847
hclose
[function]
[call site]
04848
hts_log
[function]
[call site]
04849
kputsn
[function]
[call site]
04850
kputc
[function]
[call site]
04851
hts_log
[function]
[call site]
04852
bcf_hdr_parse
[function]
[call site]
04853
bcf_hdr_parse_line
[function]
[call site]
04854
strcasecmp
[call site]
04855
hts_log
[function]
[call site]
04856
bcf_hdr_add_hrec
[function]
[call site]
04857
bcf_hrec_destroy
[function]
[call site]
04858
bcf_hdr_parse_line
[function]
[call site]
04859
bcf_hdr_add_hrec
[function]
[call site]
04860
bcf_hrec_destroy
[function]
[call site]
04861
bcf_hdr_parse_line
[function]
[call site]
04862
bcf_hdr_add_hrec
[function]
[call site]
04863
bcf_hrec_destroy
[function]
[call site]
04864
__assert_fail
[call site]
04865
strerror
[call site]
04866
hts_log
[function]
[call site]
04867
strncmp
[call site]
04868
strchr
[call site]
04869
hts_strprint
[function]
[call site]
04870
hts_log
[function]
[call site]
04871
hts_log
[function]
[call site]
04872
bcf_hdr_parse_sample_line
[function]
[call site]
04873
strlen
[call site]
04874
strncmp
[call site]
04875
hts_log
[function]
[call site]
04876
strlen
[call site]
04877
strncmp
[call site]
04878
hts_log
[function]
[call site]
04879
bcf_hdr_add_sample_len
[function]
[call site]
04880
isspace_c
[function]
[call site]
04881
hts_realloc_ps
[function]
[call site]
04882
kh_put_vdict
[function]
[call site]
04883
hts_log
[function]
[call site]
04884
bcf_hdr_sync
[function]
[call site]
04885
hts_realloc_p
[function]
[call site]
04886
get_hdr_aux
[function]
[call site]
04887
bcf_hdr_check_sanity
[function]
[call site]
04888
bcf_get_version
[function]
[call site]
04889
bcf_hdr_id2int
[function]
[call site]
04890
kh_get_vdict
[function]
[call site]
04891
atoi
[call site]
04892
hts_log
[function]
[call site]
04893
hts_log
[function]
[call site]
04894
bcf_hdr_id2int
[function]
[call site]
04895
atoi
[call site]
04896
hts_log
[function]
[call site]
04897
hts_log
[function]
[call site]
04898
tbx_index_load3
[function]
[call site]
04899
index_load
[function]
[call site]
04900
calloc
[call site]
04901
hts_idx_load3
[function]
[call site]
04902
idx_find_and_load
[function]
[call site]
04903
strstr
[call site]
04904
strdup
[call site]
04905
__errno_location
[call site]
04906
strerror
[call site]
04907
hts_log
[function]
[call site]
04908
hts_idx_load3
[function]
[call site]
04909
hisremote
[function]
[call site]
04910
stat
[call site]
04911
hts_log
[function]
[call site]
04912
idx_test_and_fetch
[function]
[call site]
04913
hisremote
[function]
[call site]
04914
strncmp
[call site]
04915
strcspn
[call site]
04916
kputsn
[function]
[call site]
04917
access
[call site]
04918
hopen
[function]
[call site]
04919
hts_log
[function]
[call site]
04920
hts_detect_format2
[function]
[call site]
04921
hts_log
[function]
[call site]
04922
hts_log
[function]
[call site]
04923
hts_open_tmpfile
[function]
[call site]
04924
hts_log
[function]
[call site]
04925
hts_log
[function]
[call site]
04926
calloc
[call site]
04927
__errno_location
[call site]
04928
strerror
[call site]
04929
hts_log
[function]
[call site]
04930
hread
[function]
[call site]
04931
hwrite
[function]
[call site]
04932
__errno_location
[call site]
04933
strerror
[call site]
04934
hts_log
[function]
[call site]
04935
hts_log
[function]
[call site]
04936
hclose
[function]
[call site]
04937
__errno_location
[call site]
04938
strerror
[call site]
04939
hts_log
[function]
[call site]
04940
rename
[call site]
04941
__errno_location
[call site]
04942
strerror
[call site]
04943
hts_log
[function]
[call site]
04944
ks_clear
[function]
[call site]
04945
hclose
[function]
[call site]
04946
hts_log
[function]
[call site]
04947
hopen
[function]
[call site]
04948
hclose_abruptly
[function]
[call site]
04949
strlen
[call site]
04950
__errno_location
[call site]
04951
hclose_abruptly
[function]
[call site]
04952
hclose_abruptly
[function]
[call site]
04953
unlink
[call site]
04954
__errno_location
[call site]
04955
strdup
[call site]
04956
idx_read
[function]
[call site]
04957
bgzf_open
[function]
[call site]
04958
ed_is_big
[function]
[call site]
04959
bgzf_read
[function]
[call site]
04960
memcmp
[call site]
04961
bgzf_read
[function]
[call site]
04962
ed_swap_4p
[function]
[call site]
04963
hts_malloc_ps
[function]
[call site]
04964
bgzf_read
[function]
[call site]
04965
bgzf_read
[function]
[call site]
04966
ed_swap_4p
[function]
[call site]
04967
hts_idx_init
[function]
[call site]
04968
idx_read_core
[function]
[call site]
04972
ed_is_big
[function]
[call site]
04973
kh_init_bin
[function]
[call site]
04974
bgzf_read
[function]
[call site]
04975
ed_swap_4p
[function]
[call site]
04976
bgzf_read
[function]
[call site]
04977
ed_swap_4p
[function]
[call site]
04978
kh_put_bin
[function]
[call site]
04979
bgzf_read
[function]
[call site]
04980
ed_swap_8p
[function]
[call site]
04981
bgzf_read
[function]
[call site]
04982
ed_swap_4p
[function]
[call site]
04983
hts_malloc_p
[function]
[call site]
04984
bgzf_read
[function]
[call site]
04985
swap_bins
[function]
[call site]
04986
ed_swap_8p
[function]
[call site]
04987
ed_swap_8p
[function]
[call site]
04988
bgzf_read
[function]
[call site]
04989
ed_swap_4p
[function]
[call site]
04990
hts_malloc_p
[function]
[call site]
04991
bgzf_read
[function]
[call site]
04992
ed_swap_8p
[function]
[call site]
04993
update_loff
[function]
[call site]
04994
hts_bin_bot
[function]
[call site]
04995
hts_bin_level
[function]
[call site]
04996
bgzf_read
[function]
[call site]
04997
ed_swap_8p
[function]
[call site]
04998
memcmp
[call site]
04999
bgzf_read
[function]
[call site]
05000
le_to_u32
[function]
[call site]
05001
hts_idx_init
[function]
[call site]
05002
le_to_u32
[function]
[call site]
05003
hts_malloc_ps
[function]
[call site]
05004
bgzf_read
[function]
[call site]
05005
idx_read_core
[function]
[call site]
05006
memcmp
[call site]
05007
bgzf_read
[function]
[call site]
05008
ed_swap_4p
[function]
[call site]
05009
hts_idx_init
[function]
[call site]
05010
idx_read_core
[function]
[call site]
05011
__errno_location
[call site]
05012
bgzf_close
[function]
[call site]
05013
bgzf_close
[function]
[call site]
05014
hts_idx_destroy
[function]
[call site]
05015
__errno_location
[call site]
05016
strerror
[call site]
05017
hts_log
[function]
[call site]
05018
hts_idx_check_local
[function]
[call site]
05019
hisremote
[function]
[call site]
05020
strlen
[call site]
05021
strncmp
[call site]
05022
strncmp
[call site]
05023
hts_log
[function]
[call site]
05024
strlen
[call site]
05025
calloc
[call site]
05026
strcpy
[call site]
05027
stat
[call site]
05028
strcpy
[call site]
05029
stat
[call site]
05030
strcpy
[call site]
05031
stat
[call site]
05032
strcpy
[call site]
05033
stat
[call site]
05034
strcpy
[call site]
05035
stat
[call site]
05036
strcpy
[call site]
05037
stat
[call site]
05038
strcpy
[call site]
05039
stat
[call site]
05040
strcpy
[call site]
05041
stat
[call site]
05042
strcpy
[call site]
05043
strcmp
[call site]
05044
strcmp
[call site]
05045
strcpy
[call site]
05046
stat
[call site]
05047
strcpy
[call site]
05048
stat
[call site]
05049
hisremote
[function]
[call site]
05050
idx_filename
[function]
[call site]
05051
haddextension
[function]
[call site]
05052
find_scheme_handler
[function]
[call site]
05053
strncmp
[call site]
05054
strcspn
[call site]
05055
strchr
[call site]
05056
strip_extension
[function]
[call site]
05057
kputsn
[function]
[call site]
05058
kputs
[function]
[call site]
05059
kputs
[function]
[call site]
05060
idx_test_and_fetch
[function]
[call site]
05061
haddextension
[function]
[call site]
05062
idx_test_and_fetch
[function]
[call site]
05063
idx_filename
[function]
[call site]
05064
idx_filename
[function]
[call site]
05065
idx_filename
[function]
[call site]
05066
idx_filename
[function]
[call site]
05067
idx_filename
[function]
[call site]
05068
hts_log
[function]
[call site]
05069
hts_idx_load3
[function]
[call site]
05070
idx_read
[function]
[call site]
05071
hts_idx_get_meta
[function]
[call site]
05072
le_to_i32
[function]
[call site]
05073
le_to_i32
[function]
[call site]
05074
le_to_i32
[function]
[call site]
05075
le_to_i32
[function]
[call site]
05076
le_to_i32
[function]
[call site]
05077
le_to_i32
[function]
[call site]
05078
le_to_u32
[function]
[call site]
05079
get_tid
[function]
[call site]
05080
kh_init_s2i
[function]
[call site]
05081
kh_put_s2i
[function]
[call site]
05082
strdup
[call site]
05083
kh_del_s2i
[function]
[call site]
05084
kh_get_s2i
[function]
[call site]
05085
__errno_location
[call site]
05086
strerror
[call site]
05087
hts_log
[function]
[call site]
05088
strlen
[call site]
05089
hts_log
[function]
[call site]
05090
tbx_destroy
[function]
[call site]
05091
hts_idx_destroy
[function]
[call site]
05092
kh_destroy_s2i
[function]
[call site]
05093
tbx_seqnames
[function]
[call site]
05094
calloc
[call site]
05095
calloc
[call site]
05096
__assert_fail
[call site]
05097
__assert_fail
[call site]
05098
bcf_hdr_get_hrec
[function]
[call site]
05099
add_missing_contig_hrec
[function]
[call site]
05100
calloc
[call site]
05101
strdup
[call site]
05102
bcf_hrec_add_key
[function]
[call site]
05103
strlen
[call site]
05104
bcf_hrec_set_val
[function]
[call site]
05105
bcf_hdr_add_hrec
[function]
[call site]
05106
__errno_location
[call site]
05107
__errno_location
[call site]
05108
strerror
[call site]
05109
hts_log
[function]
[call site]
05110
bcf_hrec_destroy
[function]
[call site]
05111
__errno_location
[call site]
05112
bcf_hdr_sync
[function]
[call site]
05113
tbx_destroy
[function]
[call site]
05114
tbx_destroy
[function]
[call site]
05115
bcf_hdr_destroy
[function]
[call site]
05116
get_hdr_aux
[function]
[call site]
05117
kh_destroy_hdict
[function]
[call site]
05118
kh_destroy_vdict
[function]
[call site]
05119
bcf_hrec_destroy
[function]
[call site]
05120
hts_log
[function]
[call site]
05121
__assert_fail
[call site]
05122
bcf_hdr_init
[function]
[call site]
05123
bgzf_read
[function]
[call site]
05124
hts_log
[function]
[call site]
05125
bcf_hdr_destroy
[function]
[call site]
05126
strncmp
[call site]
05127
strncmp
[call site]
05128
hts_log
[function]
[call site]
05129
hts_log
[function]
[call site]
05130
bcf_hdr_destroy
[function]
[call site]
05131
bgzf_read
[function]
[call site]
05132
__errno_location
[call site]
05133
__errno_location
[call site]
05134
bgzf_read
[function]
[call site]
05135
bcf_hdr_parse
[function]
[call site]
05136
bcf_hdr_incr_ref
[function]
[call site]
05137
get_hdr_aux
[function]
[call site]
05138
bgzf_set_private_data
[function]
[call site]
05139
__assert_fail
[call site]
05140
hdr_bgzf_private_data_cleanup
[function]
[call site]
05141
bcf_hdr_decr_ref
[function]
[call site]
05142
get_hdr_aux
[function]
[call site]
05143
bcf_hdr_destroy
[function]
[call site]
05144
hts_log
[function]
[call site]
05145
bcf_hdr_destroy
[function]
[call site]
05146
hts_close_or_abort
[function]
[call site]
05147
hts_close
[function]
[call site]
05148
bcf_hdr_write
[function]
[call site]
05149
__errno_location
[call site]
05150
bcf_hdr_sync
[function]
[call site]
05151
vcf_hdr_write
[function]
[call site]
05152
bcf_hdr_format
[function]
[call site]
05153
_bcf_hrec_format
[function]
[call site]
05154
ksprintf
[function]
[call site]
05155
strcmp
[call site]
05156
kputc
[function]
[call site]
05157
ksprintf
[function]
[call site]
05158
ksprintf
[function]
[call site]
05159
ksprintf
[function]
[call site]
05160
ksprintf
[function]
[call site]
05161
ksprintf
[function]
[call site]
05162
ksprintf
[function]
[call site]
05163
ksprintf
[function]
[call site]
05164
bgzf_write
[function]
[call site]
05165
bgzf_flush
[function]
[call site]
05166
hwrite
[function]
[call site]
05167
bcf_hdr_format
[function]
[call site]
05168
kputc
[function]
[call site]
05169
bgzf_write
[function]
[call site]
05170
u32_to_le
[function]
[call site]
05171
bgzf_write
[function]
[call site]
05172
bgzf_write
[function]
[call site]
05173
bgzf_flush
[function]
[call site]
05174
bcf_hdr_incr_ref
[function]
[call site]
05175
bgzf_set_private_data
[function]
[call site]
05176
hdr_bgzf_private_data_cleanup
[function]
[call site]
05177
bcf_init
[function]
[call site]
05178
calloc
[call site]
05179
bcf_read
[function]
[call site]
05180
vcf_read
[function]
[call site]
05181
hts_getline
[function]
[call site]
05182
vcf_parse
[function]
[call site]
05183
ks_resize
[function]
[call site]
05184
bcf_clear
[function]
[call site]
05185
bcf_float_set
[function]
[call site]
05186
kstrtok
[function]
[call site]
05187
kh_get_vdict
[function]
[call site]
05188
hts_log
[function]
[call site]
05189
hts_log
[function]
[call site]
05190
fix_chromosome
[function]
[call site]
05191
ksprintf
[function]
[call site]
05192
bcf_hdr_parse_line
[function]
[call site]
05193
bcf_hdr_add_hrec
[function]
[call site]
05194
bcf_hrec_destroy
[function]
[call site]
05195
bcf_hdr_sync
[function]
[call site]
05196
kh_get_vdict
[function]
[call site]
05197
hts_log
[function]
[call site]
05198
kstrtok
[function]
[call site]
05199
hts_str2uint
[function]
[call site]
05200
hts_log
[function]
[call site]
05201
hts_log
[function]
[call site]
05202
kstrtok
[function]
[call site]
05203
memcmp
[call site]
05204
bcf_enc_vchar
[function]
[call site]
05205
bcf_enc_size
[function]
[call site]
05206
ks_resize
[function]
[call site]
05207
ks_resize
[function]
[call site]
05208
i16_to_le
[function]
[call site]
05209
i32_to_le
[function]
[call site]
05210
kputsn
[function]
[call site]
05211
bcf_enc_size
[function]
[call site]
05212
kstrtok
[function]
[call site]
05213
bcf_enc_vchar
[function]
[call site]
05214
kstrtok
[function]
[call site]
05215
memcmp
[call site]
05216
bcf_seqname_safe
[function]
[call site]
05217
bcf_seqname
[function]
[call site]
05218
bcf_hdr_id2name
[function]
[call site]
05219
hts_log
[function]
[call site]
05220
bcf_enc_vchar
[function]
[call site]
05221
kstrtok
[function]
[call site]
05222
memcmp
[call site]
05223
atof
[call site]
05224
bcf_float_set
[function]
[call site]
05225
kstrtok
[function]
[call site]
05226
memcmp
[call site]
05227
vcf_parse_filter
[function]
[call site]
05228
hts_malloc_p
[function]
[call site]
05229
bcf_seqname_safe
[function]
[call site]
05230
hts_log
[function]
[call site]
05231
kstrtok
[function]
[call site]
05232
kh_get_vdict
[function]
[call site]
05233
bcf_seqname_safe
[function]
[call site]
05234
hts_log
[function]
[call site]
05235
hts_log
[function]
[call site]
05236
ksprintf
[function]
[call site]
05237
bcf_hdr_parse_line
[function]
[call site]
05238
bcf_hdr_add_hrec
[function]
[call site]
05239
bcf_hrec_destroy
[function]
[call site]
05240
bcf_hdr_sync
[function]
[call site]
05241
kh_get_vdict
[function]
[call site]
05242
bcf_seqname_safe
[function]
[call site]
05243
hts_log
[function]
[call site]
05244
bcf_enc_vint
[function]
[call site]
05245
bcf_enc_size
[function]
[call site]
05246
bcf_enc_int1
[function]
[call site]
05247
ks_resize
[function]
[call site]
05248
i16_to_le
[function]
[call site]
05249
i32_to_le
[function]
[call site]
05250
bcf_enc_size
[function]
[call site]
05251
ks_resize
[function]
[call site]
05252
bcf_enc_size
[function]
[call site]
05253
ks_resize
[function]
[call site]
05254
i16_to_le
[function]
[call site]
05255
bcf_enc_size
[function]
[call site]
05256
ks_resize
[function]
[call site]
05257
i32_to_le
[function]
[call site]
05258
bcf_enc_vint
[function]
[call site]
05259
kstrtok
[function]
[call site]
05260
memcmp
[call site]
05261
vcf_parse_info
[function]
[call site]
05262
bcf_seqname_safe
[function]
[call site]
05263
hts_log
[function]
[call site]
05264
kh_get_vdict
[function]
[call site]
05265
bcf_seqname_safe
[function]
[call site]
05266
hts_log
[function]
[call site]
05267
hts_log
[function]
[call site]
05268
ksprintf
[function]
[call site]
05269
bcf_hdr_parse_line
[function]
[call site]
05270
bcf_hdr_add_hrec
[function]
[call site]
05271
bcf_hrec_destroy
[function]
[call site]
05272
bcf_hdr_sync
[function]
[call site]
05273
kh_get_vdict
[function]
[call site]
05274
bcf_seqname_safe
[function]
[call site]
05275
hts_log
[function]
[call site]
05276
bcf_enc_int1
[function]
[call site]
05277
bcf_enc_size
[function]
[call site]
05278
bcf_enc_vchar
[function]
[call site]
05279
hts_realloc_p
[function]
[call site]
05280
bcf_seqname_safe
[function]
[call site]
05281
hts_log
[function]
[call site]
05282
hts_str2int
[function]
[call site]
05283
bcf_seqname_safe
[function]
[call site]
05284
hts_log
[function]
[call site]
05285
bcf_enc_int1
[function]
[call site]
05286
bcf_enc_vint
[function]
[call site]
05287
memcmp
[call site]
05288
bcf_seqname_safe
[function]
[call site]
05289
hts_log
[function]
[call site]
05290
hts_str2dbl
[function]
[call site]
05291
bcf_float_set
[function]
[call site]
05292
bcf_enc_vfloat
[function]
[call site]
05293
__assert_fail
[call site]
05294
bcf_enc_size
[function]
[call site]
05295
serialize_float_array
[function]
[call site]
05296
ks_resize
[function]
[call site]
05297
float_to_le
[function]
[call site]
05298
kstrtok
[function]
[call site]
05299
vcf_parse_format
[function]
[call site]
05300
vcf_parse_format_empty1
[function]
[call site]
05301
bcf_seqname_safe
[function]
[call site]
05302
hts_log
[function]
[call site]
05303
vcf_parse_format_dict2
[function]
[call site]
05304
kstrtok
[function]
[call site]
05305
bcf_seqname_safe
[function]
[call site]
05306
hts_log
[function]
[call site]
05307
kh_get_vdict
[function]
[call site]
05308
bcf_seqname_safe
[function]
[call site]
05309
hts_log
[function]
[call site]
05310
bcf_seqname_safe
[function]
[call site]
05311
hts_log
[function]
[call site]
05312
hts_log
[function]
[call site]
05313
ksprintf
[function]
[call site]
05314
bcf_hdr_parse_line
[function]
[call site]
05315
bcf_hdr_add_hrec
[function]
[call site]
05316
bcf_hrec_destroy
[function]
[call site]
05317
bcf_hdr_sync
[function]
[call site]
05318
kh_get_vdict
[function]
[call site]
05319
bcf_seqname_safe
[function]
[call site]
05320
hts_log
[function]
[call site]
05321
vcf_parse_format_max3
[function]
[call site]
05322
hts_log
[function]
[call site]
05323
vcf_parse_format_alloc4
[function]
[call site]
05324
bcf_seqname_safe
[function]
[call site]
05325
hts_log
[function]
[call site]
05326
align_mem
[function]
[call site]
05327
kputsn
[function]
[call site]
05328
bcf_seqname_safe
[function]
[call site]
05329
hts_log
[function]
[call site]
05330
bcf_seqname_safe
[function]
[call site]
05331
hts_log
[function]
[call site]
05332
ks_resize
[function]
[call site]
05333
bcf_seqname_safe
[function]
[call site]
05334
hts_log
[function]
[call site]
05335
bcf_seqname_safe
[function]
[call site]
05336
hts_log
[function]
[call site]
05337
vcf_parse_format_fill5
[function]
[call site]
05338
bcf_get_version
[function]
[call site]
05339
bcf_seqname_safe
[function]
[call site]
05340
hts_log
[function]
[call site]
05341
hts_str2uint
[function]
[call site]
05342
bcf_seqname_safe
[function]
[call site]
05343
hts_log
[function]
[call site]
05344
bcf_seqname_safe
[function]
[call site]
05345
hts_log
[function]
[call site]
05346
hts_str2int
[function]
[call site]
05347
bcf_seqname_safe
[function]
[call site]
05348
hts_log
[function]
[call site]
05349
isdigit_c
[function]
[call site]
05350
bcf_float_set
[function]
[call site]
05351
hts_str2dbl
[function]
[call site]
05352
bcf_seqname
[function]
[call site]
05353
hts_log
[function]
[call site]
05354
bcf_float_set
[function]
[call site]
05355
bcf_float_set
[function]
[call site]
05356
bcf_seqname_safe
[function]
[call site]
05357
hts_log
[function]
[call site]
05358
hts_strprint
[function]
[call site]
05359
bcf_seqname_safe
[function]
[call site]
05360
hts_log
[function]
[call site]
05361
bcf_float_set
[function]
[call site]
05362
bcf_float_set
[function]
[call site]
05363
vcf_parse_format_gt6
[function]
[call site]
05364
bcf_enc_int1
[function]
[call site]
05365
bcf_enc_size
[function]
[call site]
05366
kputsn
[function]
[call site]
05367
bcf_enc_vint
[function]
[call site]
05368
bcf_enc_size
[function]
[call site]
05369
serialize_float_array
[function]
[call site]
05370
bcf_seqname_safe
[function]
[call site]
05371
hts_log
[function]
[call site]
05372
vcf_parse_format_check7
[function]
[call site]
05373
bcf_seqname_safe
[function]
[call site]
05374
hts_log
[function]
[call site]
05375
bcf_seqname_safe
[function]
[call site]
05376
hts_log
[function]
[call site]
05377
get_rlen
[function]
[call site]
05378
bcf_hdr_id2int
[function]
[call site]
05379
svlen_on_ref_for_vcf_alt
[function]
[call site]
05380
strlen
[call site]
05381
memcmp
[call site]
05382
memcmp
[call site]
05383
memcmp
[call site]
05384
memcmp
[call site]
05385
strcmp
[call site]
05386
strcmp
[call site]
05387
strlen
[call site]
05388
bcf_dec_size
[function]
[call site]
05389
bcf_dec_typed_int1
[function]
[call site]
05390
bcf_dec_int1
[function]
[call site]
05391
le_to_i8
[function]
[call site]
05392
le_to_i16
[function]
[call site]
05393
le_to_i32
[function]
[call site]
05394
le_to_i64
[function]
[call site]
05395
le_to_u64
[function]
[call site]
05396
bcf_dec_size
[function]
[call site]
05397
svlen_on_ref_for_vcf_alt
[function]
[call site]
05398
strncmp
[call site]
05399
strncmp
[call site]
05400
bcf_dec_size
[function]
[call site]
05401
bcf_hdr_id2int
[function]
[call site]
05402
bcf_get_info
[function]
[call site]
05403
bcf_hdr_id2int
[function]
[call site]
05404
bcf_get_info_id
[function]
[call site]
05405
bcf_unpack
[function]
[call site]
05406
bcf_fmt_sized_array
[function]
[call site]
05407
bcf_dec_size
[function]
[call site]
05408
bcf_fmt_array
[function]
[call site]
05409
kputc_
[function]
[call site]
05410
memchr
[call site]
05411
kputsn
[function]
[call site]
05412
kputc
[function]
[call site]
05413
le_to_i8
[function]
[call site]
05414
kputc_
[function]
[call site]
05415
kputc
[function]
[call site]
05416
kputw
[function]
[call site]
05417
le_to_i16
[function]
[call site]
05418
kputc_
[function]
[call site]
05419
kputc
[function]
[call site]
05420
kputw
[function]
[call site]
05421
le_to_i32
[function]
[call site]
05422
kputc_
[function]
[call site]
05423
kputc
[function]
[call site]
05424
kputw
[function]
[call site]
05425
le_to_u32
[function]
[call site]
05426
kputc_
[function]
[call site]
05427
kputc
[function]
[call site]
05428
le_to_float
[function]
[call site]
05429
kputd
[function]
[call site]
05430
hts_log
[function]
[call site]
05431
exit
[call site]
05432
hts_realloc_or_die
[function]
[call site]
05433
bcf_fmt_sized_array
[function]
[call site]
05434
kputc_
[function]
[call site]
05435
bcf_dec_size
[function]
[call site]
05436
hts_realloc_or_die
[function]
[call site]
05437
bcf_dec_int1
[function]
[call site]
05438
hts_realloc_or_die
[function]
[call site]
05439
bcf_unpack_info_core1
[function]
[call site]
05440
bcf_dec_typed_int1
[function]
[call site]
05441
bcf_dec_size
[function]
[call site]
05442
le_to_i16
[function]
[call site]
05443
le_to_i32
[function]
[call site]
05444
le_to_float
[function]
[call site]
05445
le_to_i64
[function]
[call site]
05446
hts_realloc_or_die
[function]
[call site]
05447
bcf_unpack_fmt_core1
[function]
[call site]
05448
bcf_dec_typed_int1
[function]
[call site]
05449
bcf_dec_size
[function]
[call site]
05450
bcf_get_info
[function]
[call site]
05451
bcf_dec_typed_int1
[function]
[call site]
05452
bcf_unpack_info_core1
[function]
[call site]
05453
bcf_unpack_info_core1
[function]
[call site]
05454
bcf_dec_size
[function]
[call site]
05455
bcf_hdr_id2int
[function]
[call site]
05456
bcf_get_fmt
[function]
[call site]
05457
bcf_hdr_id2int
[function]
[call site]
05458
bcf_get_fmt_id
[function]
[call site]
05459
bcf_unpack
[function]
[call site]
05460
bcf_dec_typed_int1
[function]
[call site]
05461
bcf_unpack_fmt_core1
[function]
[call site]
05462
bcf_dec_size
[function]
[call site]
05463
le_to_i8
[function]
[call site]
05464
le_to_i16
[function]
[call site]
05465
le_to_i32
[function]
[call site]
05466
le_to_i64
[function]
[call site]
05467
le_to_i8
[function]
[call site]
05468
le_to_i16
[function]
[call site]
05469
le_to_i32
[function]
[call site]
05470
le_to_i64
[function]
[call site]
05471
bgzf_get_private_data
[function]
[call site]
05472
__assert_fail
[call site]
05473
bcf_read1_core
[function]
[call site]
05474
bgzf_read
[function]
[call site]
05475
bcf_clear
[function]
[call site]
05476
le_to_u32
[function]
[call site]
05477
le_to_u32
[function]
[call site]
05478
ks_resize
[function]
[call site]
05479
ks_resize
[function]
[call site]
05480
le_to_i32
[function]
[call site]
05481
le_to_u32
[function]
[call site]
05482
le_to_i32
[function]
[call site]
05483
le_to_float
[function]
[call site]
05484
le_to_u16
[function]
[call site]
05485
le_to_u16
[function]
[call site]
05486
le_to_u32
[function]
[call site]
05487
bgzf_read
[function]
[call site]
05488
bgzf_read
[function]
[call site]
05489
bcf_record_check
[function]
[call site]
05490
bcf_get_version
[function]
[call site]
05491
bcf_hdr_id2int
[function]
[call site]
05492
hts_log
[function]
[call site]
05493
bcf_dec_size_safe
[function]
[call site]
05494
bcf_dec_typed_int1_safe
[function]
[call site]
05495
le_to_i16
[function]
[call site]
05496
le_to_i32
[function]
[call site]
05497
bcf_seqname_safe
[function]
[call site]
05498
get_type_name
[function]
[call site]
05499
hts_log
[function]
[call site]
05500
bcf_seqname_safe
[function]
[call site]
05501
hts_log
[function]
[call site]
05502
bcf_dec_size_safe
[function]
[call site]
05503
bcf_seqname_safe
[function]
[call site]
05504
get_type_name
[function]
[call site]
05505
hts_log
[function]
[call site]
05506
bcf_dec_size_safe
[function]
[call site]
05507
bcf_seqname_safe
[function]
[call site]
05508
get_type_name
[function]
[call site]
05509
hts_log
[function]
[call site]
05510
bcf_dec_int1
[function]
[call site]
05511
bcf_seqname_safe
[function]
[call site]
05512
hts_log
[function]
[call site]
05513
bcf_dec_typed_int1_safe
[function]
[call site]
05514
bcf_seqname_safe
[function]
[call site]
05515
hts_log
[function]
[call site]
05516
bcf_dec_size_safe
[function]
[call site]
05517
bcf_seqname_safe
[function]
[call site]
05518
get_type_name
[function]
[call site]
05519
hts_log
[function]
[call site]
05520
bcf_dec_typed_int1_safe
[function]
[call site]
05521
bcf_record_check_err
[function]
[call site]
05522
bcf_seqname_safe
[function]
[call site]
05523
hts_log
[function]
[call site]
05524
bcf_dec_size_safe
[function]
[call site]
05525
bcf_record_check_err
[function]
[call site]
05526
updatephasing
[function]
[call site]
05527
bcf_seqname_safe
[function]
[call site]
05528
hts_log
[function]
[call site]
05529
get_rlen
[function]
[call site]
05530
bcf_seqname_safe
[function]
[call site]
05531
hts_log
[function]
[call site]
05532
bcf_seqname_safe
[function]
[call site]
05533
hts_log
[function]
[call site]
05534
bcf_seqname_safe
[function]
[call site]
05535
hts_log
[function]
[call site]
05536
bcf_subset_format
[function]
[call site]
05537
hts_realloc_or_die
[function]
[call site]
05538
bcf_unpack_fmt_core1
[function]
[call site]
05539
bcf_write
[function]
[call site]
05540
bcf_hdr_sync
[function]
[call site]
05541
bcf_seqname_safe
[function]
[call site]
05542
vcf_write
[function]
[call site]
05543
vcf_format
[function]
[call site]
05544
bcf_seqname
[function]
[call site]
05545
hts_log
[function]
[call site]
05546
__errno_location
[call site]
05547
bcf_unpack
[function]
[call site]
05548
get_hdr_aux
[function]
[call site]
05549
calloc
[call site]
05550
kputs
[function]
[call site]
05551
kputc_
[function]
[call site]
05552
kputll
[function]
[call site]
05553
kputc_
[function]
[call site]
05554
kputs
[function]
[call site]
05555
kputc_
[function]
[call site]
05556
kputs
[function]
[call site]
05557
kputc_
[function]
[call site]
05558
kputc_
[function]
[call site]
05559
kputc_
[function]
[call site]
05560
kputs
[function]
[call site]
05561
kputc_
[function]
[call site]
05562
kputc_
[function]
[call site]
05563
bcf_float_is_missing
[function]
[call site]
05564
kputc_
[function]
[call site]
05565
kputd
[function]
[call site]
05566
kputc_
[function]
[call site]
05567
bcf_seqname_safe
[function]
[call site]
05568
hts_log
[function]
[call site]
05569
__errno_location
[call site]
05570
kputc_
[function]
[call site]
05571
strlen
[call site]
05572
kputsn
[function]
[call site]
05573
kputc_
[function]
[call site]
05574
kputc_
[function]
[call site]
05575
bcf_dec_typed_int1
[function]
[call site]
05576
bcf_dec_size
[function]
[call site]
05577
bcf_seqname_safe
[function]
[call site]
05578
hts_log
[function]
[call site]
05579
__errno_location
[call site]
05580
strlen
[call site]
05581
ks_resize
[function]
[call site]
05582
bcf_fmt_array
[function]
[call site]
05583
bcf_float_is_missing
[function]
[call site]
05584
kputd
[function]
[call site]
05585
kputc_
[function]
[call site]
05586
kputc_
[function]
[call site]
05587
kputw
[function]
[call site]
05588
kputc_
[function]
[call site]
05589
kputll
[function]
[call site]
05590
bcf_seqname_safe
[function]
[call site]
05591
hts_log
[function]
[call site]
05592
__errno_location
[call site]
05593
kputc_
[function]
[call site]
05594
kputc_
[function]
[call site]
05595
hts_malloc_p
[function]
[call site]
05596
bcf_dec_typed_int1
[function]
[call site]
05597
bcf_dec_size
[function]
[call site]
05598
kputc_
[function]
[call site]
05599
bcf_seqname_safe
[function]
[call site]
05600
hts_log
[function]
[call site]
05601
__errno_location
[call site]
05602
strlen
[call site]
05603
kputsn
[function]
[call site]
05604
kputsn
[function]
[call site]
05605
kputc_
[function]
[call site]
05606
kputc_
[function]
[call site]
05607
bcf_format_gt_v2
[function]
[call site]
05608
le_to_i8
[function]
[call site]
05609
kputc
[function]
[call site]
05610
kputw
[function]
[call site]
05611
le_to_i16
[function]
[call site]
05612
kputc
[function]
[call site]
05613
kputw
[function]
[call site]
05614
le_to_i32
[function]
[call site]
05615
kputc
[function]
[call site]
05616
kputw
[function]
[call site]
05617
kputc
[function]
[call site]
05618
hts_log
[function]
[call site]
05619
get_hdr_aux
[function]
[call site]
05620
kinsert_char
[function]
[call site]
05621
ks_resize
[function]
[call site]
05622
kinsert_char
[function]
[call site]
05623
kinsert_char
[function]
[call site]
05624
hts_log
[function]
[call site]
05625
__errno_location
[call site]
05626
bcf_fmt_array1
[function]
[call site]
05627
kputc_
[function]
[call site]
05628
kputc_
[function]
[call site]
05629
kputw
[function]
[call site]
05630
le_to_i16
[function]
[call site]
05631
kputc_
[function]
[call site]
05632
kputw
[function]
[call site]
05633
le_to_i32
[function]
[call site]
05634
kputc_
[function]
[call site]
05635
kputw
[function]
[call site]
05636
le_to_u32
[function]
[call site]
05637
kputc_
[function]
[call site]
05638
le_to_float
[function]
[call site]
05639
kputd
[function]
[call site]
05640
hts_log
[function]
[call site]
05641
bcf_fmt_array
[function]
[call site]
05642
kputc_
[function]
[call site]
05643
bcf_fmt_array1
[function]
[call site]
05644
bcf_fmt_array
[function]
[call site]
05645
kputc_
[function]
[call site]
05646
kputsn
[function]
[call site]
05647
kputc
[function]
[call site]
05648
bgzf_flush_try
[function]
[call site]
05649
hts_idx_amend_last
[function]
[call site]
05650
bgzf_write
[function]
[call site]
05651
hwrite
[function]
[call site]
05652
bcf_seqname_safe
[function]
[call site]
05653
hts_idx_tbi_name
[function]
[call site]
05654
strlen
[call site]
05655
hts_realloc_ps
[function]
[call site]
05656
strcpy
[call site]
05657
le_to_u32
[function]
[call site]
05658
u32_to_le
[function]
[call site]
05659
bgzf_idx_push
[function]
[call site]
05660
bcf_strerror
[function]
[call site]
05661
add_desc_to_buffer
[function]
[call site]
05662
add_desc_to_buffer
[function]
[call site]
05666
bcf_seqname_safe
[function]
[call site]
05667
hts_log
[function]
[call site]
05668
bcf1_sync
[function]
[call site]
05669
bcf1_sync_id
[function]
[call site]
05670
strcmp
[call site]
05671
strlen
[call site]
05672
bcf_enc_vchar
[function]
[call site]
05673
bcf_enc_size
[function]
[call site]
05674
bcf1_sync_alleles
[function]
[call site]
05675
bcf1_sync_filter
[function]
[call site]
05679
bcf_enc_vint
[function]
[call site]
05680
bcf_enc_vint
[function]
[call site]
05681
bcf1_sync_info
[function]
[call site]
05682
kputsn_
[function]
[call site]
05683
bcf_unpack
[function]
[call site]
05684
bcf1_sync_id
[function]
[call site]
05685
kputsn_
[function]
[call site]
05686
bcf1_sync_alleles
[function]
[call site]
05687
kputsn_
[function]
[call site]
05688
strlen
[call site]
05689
bcf1_sync_filter
[function]
[call site]
05690
kputsn_
[function]
[call site]
05691
bcf_enc_vint
[function]
[call site]
05692
bcf1_sync_info
[function]
[call site]
05693
kputsn_
[function]
[call site]
05694
kputsn_
[function]
[call site]
05695
bcf_seqname_safe
[function]
[call site]
05696
hts_log
[function]
[call site]
05697
u32_to_le
[function]
[call site]
05698
u32_to_le
[function]
[call site]
05699
i32_to_le
[function]
[call site]
05700
u32_to_le
[function]
[call site]
05701
u32_to_le
[function]
[call site]
05702
float_to_le
[function]
[call site]
05703
u16_to_le
[function]
[call site]
05704
u16_to_le
[function]
[call site]
05705
u32_to_le
[function]
[call site]
05706
bgzf_write
[function]
[call site]
05707
bgzf_write
[function]
[call site]
05708
bgzf_write
[function]
[call site]
05709
bgzf_idx_push
[function]
[call site]
05710
bcf_destroy
[function]
[call site]
05711
bcf_empty
[function]
[call site]
05712
bcf_clear
[function]
[call site]
05713
bcf_hdr_destroy
[function]
[call site]
05714
hts_close_or_abort
[function]
[call site]
05715
hts_close
[function]
[call site]
05716
view_vcf
[function]
[call site]
05717