The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 5717 | 0 | EP | call site: 00000 | view_sam |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
__errno_location
[call site]
00024
realloc
[call site]
00025
__ac_FNV1a_hash_string
[function]
[call site]
00026
strcmp
[call site]
00027
__errno_location
[call site]
00028
strerror
[call site]
00029
hts_log
[function]
[call site]
00030
priority
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
hfile_add_scheme_handler
[function]
[call site]
00033
init_add_plugin
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hts_log
[function]
[call site]
00037
hfile_plugin_init_mem
[function]
[call site]
00038
hfile_add_scheme_handler
[function]
[call site]
00039
init_add_plugin
[function]
[call site]
00040
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00041
hfile_add_scheme_handler
[function]
[call site]
00042
init_add_plugin
[function]
[call site]
00043
hfile_plugin_init_libcurl
[function]
[call site]
00044
hts_version
[function]
[call site]
00045
curl_global_init
[call site]
00046
__errno_location
[call site]
00047
curl_share_init
[call site]
00048
curl_global_cleanup
[call site]
00049
__errno_location
[call site]
00050
curl_share_setopt
[call site]
00051
share_lock
[function]
[call site]
00052
pthread_mutex_lock
[call site]
00053
curl_share_setopt
[call site]
00054
share_unlock
[function]
[call site]
00055
pthread_mutex_unlock
[call site]
00056
curl_share_setopt
[call site]
00057
curl_share_cleanup
[call site]
00058
curl_global_cleanup
[call site]
00059
__errno_location
[call site]
00060
getenv
[call site]
00061
strdup
[call site]
00062
kh_init_auth_map
[function]
[call site]
00063
calloc
[call site]
00064
__errno_location
[call site]
00065
kh_destroy_auth_map
[function]
[call site]
00066
curl_share_cleanup
[call site]
00067
curl_global_cleanup
[call site]
00068
__errno_location
[call site]
00069
getenv
[call site]
00070
strcmp
[call site]
00071
getenv
[call site]
00072
atoi
[call site]
00073
getenv
[call site]
00074
atol
[call site]
00075
getenv
[call site]
00076
atol
[call site]
00077
getenv
[call site]
00078
atol
[call site]
00079
getenv
[call site]
00080
atol
[call site]
00081
curl_version_info
[call site]
00082
ksprintf
[function]
[call site]
00083
kvsprintf
[function]
[call site]
00084
kputd
[function]
[call site]
00085
kputsn
[function]
[call site]
00086
__errno_location
[call site]
00087
ks_resize
[function]
[call site]
00088
realloc
[call site]
00089
kputsn
[function]
[call site]
00090
kputc
[function]
[call site]
00091
ks_resize
[function]
[call site]
00092
ks_resize
[function]
[call site]
00093
snprintf
[call site]
00094
kputsn
[function]
[call site]
00095
vsnprintf
[call site]
00096
ks_resize
[function]
[call site]
00097
vsnprintf
[call site]
00098
hfile_add_scheme_handler
[function]
[call site]
00099
init_add_plugin
[function]
[call site]
00100
hfile_plugin_init_gcs
[function]
[call site]
00101
hfile_add_scheme_handler
[function]
[call site]
00102
hfile_add_scheme_handler
[function]
[call site]
00103
hfile_add_scheme_handler
[function]
[call site]
00104
init_add_plugin
[function]
[call site]
00105
hfile_plugin_init_s3
[function]
[call site]
00106
hts_version
[function]
[call site]
00107
curl_global_init
[call site]
00108
__errno_location
[call site]
00109
curl_share_init
[call site]
00110
curl_global_cleanup
[call site]
00111
__errno_location
[call site]
00112
curl_share_setopt
[call site]
00113
share_lock
[function]
[call site]
00114
pthread_mutex_lock
[call site]
00115
curl_share_setopt
[call site]
00116
share_unlock
[function]
[call site]
00117
pthread_mutex_unlock
[call site]
00118
curl_share_setopt
[call site]
00119
curl_share_cleanup
[call site]
00120
curl_global_cleanup
[call site]
00121
__errno_location
[call site]
00122
curl_version_info
[call site]
00123
ksprintf
[function]
[call site]
00124
hfile_add_scheme_handler
[function]
[call site]
00125
hfile_add_scheme_handler
[function]
[call site]
00126
hfile_add_scheme_handler
[function]
[call site]
00127
atexit
[call site]
00128
hfile_exit
[function]
[call site]
00129
hfile_shutdown
[function]
[call site]
00130
pthread_mutex_lock
[call site]
00131
kh_destroy_scheme_string
[function]
[call site]
00132
pthread_mutex_unlock
[call site]
00133
pthread_mutex_destroy
[call site]
00134
pthread_mutex_unlock
[call site]
00135
pthread_mutex_unlock
[call site]
00136
kh_get_scheme_string
[function]
[call site]
00137
strchr
[call site]
00138
strcmp
[call site]
00139
hopen_fd_stdinout
[function]
[call site]
00140
strchr
[call site]
00141
snprintf
[call site]
00142
hdopen
[function]
[call site]
00143
blksize
[function]
[call site]
00144
fstat
[call site]
00145
hfile_init
[function]
[call site]
00146
strchr
[call site]
00147
posix_memalign
[call site]
00148
strchr
[call site]
00149
hfile_destroy
[function]
[call site]
00150
__errno_location
[call site]
00151
__errno_location
[call site]
00152
strchr
[call site]
00153
strchr
[call site]
00154
hopen_fd
[function]
[call site]
00155
hfile_oflags
[function]
[call site]
00156
open
[call site]
00157
blksize
[function]
[call site]
00158
hfile_init
[function]
[call site]
00159
__errno_location
[call site]
00160
close
[call site]
00161
hfile_destroy
[function]
[call site]
00162
hts_hopen
[function]
[call site]
00163
calloc
[call site]
00164
strdup
[call site]
00165
ed_is_big
[function]
[call site]
00166
strchr
[call site]
00167
strncpy
[call site]
00168
strncpy
[call site]
00169
strchr
[call site]
00170
hts_detect_format2
[function]
[call site]
00171
hpeek
[function]
[call site]
00172
refill_buffer
[function]
[call site]
00173
__errno_location
[call site]
00174
memcmp
[call site]
00175
memcmp
[call site]
00176
decompress_peek_gz
[function]
[call site]
00177
hpeek
[function]
[call site]
00178
inflateInit2_
[call site]
00179
inflate
[call site]
00180
inflateReset
[call site]
00181
inflateEnd
[call site]
00182
memcmp
[call site]
00183
memcmp
[call site]
00184
memcmp
[call site]
00185
memcmp
[call site]
00186
decompress_peek_xz
[function]
[call site]
00187
hpeek
[function]
[call site]
00188
lzma_easy_decoder_memusage
[call site]
00189
lzma_stream_decoder
[call site]
00190
lzma_code
[call site]
00191
lzma_end
[call site]
00192
lzma_end
[call site]
00193
memcmp
[call site]
00194
hpeek
[function]
[call site]
00195
strcmp
[call site]
00196
find_file_extension
[function]
[call site]
00197
strstr
[call site]
00198
strlen
[call site]
00199
tolower_c
[function]
[call site]
00200
memcmp
[call site]
00201
memcmp
[call site]
00202
memcmp
[call site]
00203
memcmp
[call site]
00204
memcmp
[call site]
00205
memcmp
[call site]
00206
memcmp
[call site]
00207
strcmp
[call site]
00208
memcmp
[call site]
00209
parse_version
[function]
[call site]
00210
isdigit_c
[function]
[call site]
00211
__ctype_b_loc
[call site]
00212
isdigit_c
[function]
[call site]
00213
memcmp
[call site]
00214
memcmp
[call site]
00215
memcmp
[call site]
00216
memcmp
[call site]
00217
parse_version
[function]
[call site]
00218
memcmp
[call site]
00219
cmp_nonblank
[function]
[call site]
00220
isspace_c
[function]
[call site]
00221
__ctype_b_loc
[call site]
00222
memcmp
[call site]
00223
is_fastaq
[function]
[call site]
00224
is_fastaq
[function]
[call site]
00228
parse_tabbed_text
[function]
[call site]
00229
isdigit_c
[function]
[call site]
00230
strchr
[call site]
00231
isdigit_c
[function]
[call site]
00232
colmatch
[function]
[call site]
00233
colmatch
[function]
[call site]
00234
strstr
[call site]
00235
colmatch
[function]
[call site]
00236
strstr
[call site]
00237
colmatch
[function]
[call site]
00238
colmatch
[function]
[call site]
00239
is_text_only
[function]
[call site]
00240
__errno_location
[call site]
00241
hopen_htsget_redirect
[function]
[call site]
00242
hfile_init
[function]
[call site]
00243
parse_ga4gh_redirect_json
[function]
[call site]
00244
hts_json_fnext
[function]
[call site]
00245
hgetc
[function]
[call site]
00246
hgetc2
[function]
[call site]
00247
refill_buffer
[function]
[call site]
00248
fscan_string
[function]
[call site]
00249
hgetc
[function]
[call site]
00250
hgetc
[function]
[call site]
00251
kputc
[function]
[call site]
00252
kputc
[function]
[call site]
00253
kputc
[function]
[call site]
00254
kputc
[function]
[call site]
00255
kputc
[function]
[call site]
00256
kputc
[function]
[call site]
00257
hgetc
[function]
[call site]
00258
dehex
[function]
[call site]
00259
hgetc
[function]
[call site]
00260
dehex
[function]
[call site]
00261
hgetc
[function]
[call site]
00262
dehex
[function]
[call site]
00263
hgetc
[function]
[call site]
00264
dehex
[function]
[call site]
00265
encode_utf8
[function]
[call site]
00266
kputsn
[function]
[call site]
00267
kputc
[function]
[call site]
00268
kputsn
[function]
[call site]
00269
kputc
[function]
[call site]
00270
hpeek
[function]
[call site]
00271
strchr
[call site]
00272
hgetc
[function]
[call site]
00273
kputc
[function]
[call site]
00274
token_type
[function]
[call site]
00275
hts_json_fnext
[function]
[call site]
00279
strcmp
[call site]
00280
parse_ga4gh_body_json
[function]
[call site]
00281
hts_json_fnext
[function]
[call site]
00282
hts_json_fnext
[function]
[call site]
00283
strcmp
[call site]
00284
hts_json_fnext
[function]
[call site]
00285
hts_json_fnext
[function]
[call site]
00286
hts_realloc_or_die
[function]
[call site]
00287
__errno_location
[call site]
00288
realloc
[call site]
00289
__errno_location
[call site]
00290
strerror
[call site]
00291
hts_log
[function]
[call site]
00292
exit
[call site]
00293
hts_json_fnext
[function]
[call site]
00294
strcmp
[call site]
00295
hts_json_fnext
[function]
[call site]
00296
ks_release
[function]
[call site]
00297
strcmp
[call site]
00298
hts_json_fnext
[function]
[call site]
00299
hts_json_fnext
[function]
[call site]
00300
hts_json_fnext
[function]
[call site]
00301
kputs
[function]
[call site]
00302
__errno_location
[call site]
00303
strlen
[call site]
00304
kputsn
[function]
[call site]
00305
kputs
[function]
[call site]
00306
hts_realloc_or_die
[function]
[call site]
00307
ks_release
[function]
[call site]
00308
hts_json_fskip_value
[function]
[call site]
00309
skip_value
[function]
[call site]
00310
fnext
[function]
[call site]
00311
hts_json_fnext
[function]
[call site]
00312
strcmp
[call site]
00313
hts_json_fnext
[function]
[call site]
00314
hts_log
[function]
[call site]
00315
hts_json_fskip_value
[function]
[call site]
00316
hts_json_fnext
[function]
[call site]
00317
free_all_parts
[function]
[call site]
00318
free_part
[function]
[call site]
00319
hfile_destroy
[function]
[call site]
00320
__errno_location
[call site]
00321
hclose_abruptly
[function]
[call site]
00322
__errno_location
[call site]
00323
hfile_destroy
[function]
[call site]
00324
__errno_location
[call site]
00325
hts_crypt4gh_redirect
[function]
[call site]
00326
strlen
[call site]
00327
snprintf
[call site]
00328
strchr
[call site]
00329
snprintf
[call site]
00330
hopen
[function]
[call site]
00331
hts_detect_format2
[function]
[call site]
00332
strchr
[call site]
00333
strchr
[call site]
00334
strchr
[call site]
00335
strchr
[call site]
00336
strchr
[call site]
00337
strchr
[call site]
00338
strchr
[call site]
00339
strchr
[call site]
00340
abort
[call site]
00341
format_category
[function]
[call site]
00342
__errno_location
[call site]
00343
bgzf_hopen
[function]
[call site]
00344
strchr
[call site]
00345
bgzf_read_init
[function]
[call site]
00346
hpeek
[function]
[call site]
00347
calloc
[call site]
00348
hts_malloc_p
[function]
[call site]
00349
hts_prod_sat2
[function]
[call site]
00350
hts_malloc
[function]
[call site]
00351
__errno_location
[call site]
00352
memcmp
[call site]
00353
memcmp
[call site]
00354
hts_log
[function]
[call site]
00355
razf_info
[function]
[call site]
00356
strcmp
[call site]
00357
hseek
[function]
[call site]
00358
writebuffer_is_nonempty
[function]
[call site]
00359
flush_buffer
[function]
[call site]
00360
__errno_location
[call site]
00361
htell
[function]
[call site]
00362
__errno_location
[call site]
00363
__errno_location
[call site]
00364
__errno_location
[call site]
00365
hread
[function]
[call site]
00366
hread2
[function]
[call site]
00367
__errno_location
[call site]
00368
refill_buffer
[function]
[call site]
00369
ed_is_big
[function]
[call site]
00370
ed_swap_8p
[function]
[call site]
00371
ed_swap_8
[function]
[call site]
00372
hts_log
[function]
[call site]
00373
hts_log
[function]
[call site]
00374
__errno_location
[call site]
00375
kh_init_bgzf_cache
[function]
[call site]
00376
calloc
[call site]
00377
strchr
[call site]
00378
bgzf_write_init
[function]
[call site]
00379
calloc
[call site]
00380
mode2level
[function]
[call site]
00381
strchr
[call site]
00382
hts_malloc_p
[function]
[call site]
00383
strchr
[call site]
00384
calloc
[call site]
00385
deflateInit2_
[call site]
00386
bgzf_zerr
[function]
[call site]
00387
hts_log
[function]
[call site]
00391
__errno_location
[call site]
00392
strerror
[call site]
00393
hts_log
[function]
[call site]
00394
__errno_location
[call site]
00395
ed_is_big
[function]
[call site]
00396
cram_dopen
[function]
[call site]
00397
calloc
[call site]
00398
cram_read_file_def
[function]
[call site]
00399
hread
[function]
[call site]
00400
memcmp
[call site]
00401
hts_log
[function]
[call site]
00402
cram_init_tables
[function]
[call site]
00403
cram_init_varint
[function]
[call site]
00404
cram_read_SAM_hdr
[function]
[call site]
00405
int32_decode
[function]
[call site]
00406
hread
[function]
[call site]
00407
hread
[function]
[call site]
00408
cram_read_container
[function]
[call site]
00409
int32_decode
[function]
[call site]
00410
crc32
[call site]
00411
calloc
[call site]
00412
__errno_location
[call site]
00413
cram_free_container
[function]
[call site]
00414
cram_free_compression_header
[function]
[call site]
00415
kh_destroy_map
[function]
[call site]
00416
cram_free_block
[function]
[call site]
00417
kh_destroy_m_s2i
[function]
[call site]
00418
string_pool_destroy
[function]
[call site]
00419
cram_free_block
[function]
[call site]
00420
cram_free_slice
[function]
[call site]
00421
free_bam_list
[function]
[call site]
00422
bam_destroy1
[function]
[call site]
00423
bam_get_mempolicy
[function]
[call site]
00424
bam_get_mempolicy
[function]
[call site]
00425
bam_get_mempolicy
[function]
[call site]
00426
cram_free_block
[function]
[call site]
00427
cram_free_block
[function]
[call site]
00428
cram_free_block
[function]
[call site]
00429
cram_free_slice_header
[function]
[call site]
00430
cram_free_block
[function]
[call site]
00431
cram_free_block
[function]
[call site]
00432
cram_free_block
[function]
[call site]
00433
cram_free_block
[function]
[call site]
00434
cram_free_block
[function]
[call site]
00435
cram_free_block
[function]
[call site]
00436
string_pool_destroy
[function]
[call site]
00437
kh_destroy_m_s2i
[function]
[call site]
00438
kh_destroy_m_s2i
[function]
[call site]
00439
cram_free_slice
[function]
[call site]
00440
cram_stats_free
[function]
[call site]
00441
kh_destroy_m_i2i
[function]
[call site]
00442
cram_free_block
[function]
[call site]
00443
cram_free_block
[function]
[call site]
00444
kh_destroy_m_tagmap
[function]
[call site]
00445
free_bam_list
[function]
[call site]
00446
cram_free_container
[function]
[call site]
00447
hts_malloc_p
[function]
[call site]
00448
hts_prod_sat2
[function]
[call site]
00449
hts_malloc
[function]
[call site]
00450
__errno_location
[call site]
00451
cram_free_container
[function]
[call site]
00452
cram_free_container
[function]
[call site]
00453
int32_decode
[function]
[call site]
00454
cram_free_container
[function]
[call site]
00455
hts_log
[function]
[call site]
00456
cram_free_container
[function]
[call site]
00457
cram_free_container
[function]
[call site]
00458
cram_read_block
[function]
[call site]
00459
hgetc
[function]
[call site]
00460
hts_log
[function]
[call site]
00461
crc32
[call site]
00462
hgetc
[function]
[call site]
00463
crc32
[call site]
00464
hread
[function]
[call site]
00465
hread
[function]
[call site]
00466
int32_decode
[function]
[call site]
00467
cram_free_container
[function]
[call site]
00468
cram_uncompress_block
[function]
[call site]
00469
crc32
[call site]
00470
hts_log
[function]
[call site]
00471
__assert_fail
[call site]
00472
hts_log
[function]
[call site]
00473
zlib_mem_inflate
[function]
[call site]
00474
__assert_fail
[call site]
00475
__assert_fail
[call site]
00476
__assert_fail
[call site]
00477
inflateInit2_
[call site]
00478
hts_log
[function]
[call site]
00479
inflate
[call site]
00480
hts_log
[function]
[call site]
00481
inflateEnd
[call site]
00482
inflateEnd
[call site]
00483
BZ2_bzBuffToBuffDecompress
[call site]
00484
lzma_mem_inflate
[function]
[call site]
00485
lzma_easy_decoder_memusage
[call site]
00486
lzma_stream_decoder
[call site]
00487
realloc
[call site]
00488
lzma_code
[call site]
00489
hts_log
[function]
[call site]
00490
lzma_code
[call site]
00491
hts_log
[function]
[call site]
00492
realloc
[call site]
00493
lzma_end
[call site]
00494
lzma_end
[call site]
00495
rans_uncompress
[function]
[call site]
00496
rans_uncompress_O1
[function]
[call site]
00497
htscodecs_tls_calloc
[function]
[call site]
00498
htscodecs_tls_alloc
[function]
[call site]
00499
pthread_once
[call site]
00500
htscodecs_tls_init
[function]
[call site]
00501
pthread_key_create
[call site]
00502
htscodecs_tls_free_all
[function]
[call site]
00503
fprintf
[call site]
00504
strerror
[call site]
00505
fprintf
[call site]
00506
pthread_getspecific
[call site]
00507
calloc
[call site]
00508
pthread_setspecific
[call site]
00509
fprintf
[call site]
00510
calloc
[call site]
00511
RansDecSymbolInit32
[function]
[call site]
00512
__assert_fail
[call site]
00513
__assert_fail
[call site]
00514
RansDecInit
[function]
[call site]
00515
RansDecInit
[function]
[call site]
00516
RansDecInit
[function]
[call site]
00517
RansDecInit
[function]
[call site]
00518
RansDecAdvanceStep
[function]
[call site]
00519
RansDecAdvanceStep
[function]
[call site]
00520
RansDecAdvanceStep
[function]
[call site]
00521
RansDecAdvanceStep
[function]
[call site]
00522
RansDecRenorm2
[function]
[call site]
00523
RansDecRenorm2
[function]
[call site]
00524
RansDecRenormSafe
[function]
[call site]
00525
RansDecRenormSafe
[function]
[call site]
00526
RansDecRenormSafe
[function]
[call site]
00527
RansDecRenormSafe
[function]
[call site]
00528
RansDecGet
[function]
[call site]
00529
RansDecRenormSafe
[function]
[call site]
00530
htscodecs_tls_free
[function]
[call site]
00531
rans_uncompress_O0
[function]
[call site]
00535
RansDecInit
[function]
[call site]
00536
RansDecInit
[function]
[call site]
00537
RansDecInit
[function]
[call site]
00538
RansDecInit
[function]
[call site]
00539
RansDecRenorm2
[function]
[call site]
00540
RansDecRenorm2
[function]
[call site]
00541
RansDecRenormSafe
[function]
[call site]
00542
RansDecRenormSafe
[function]
[call site]
00543
RansDecRenormSafe
[function]
[call site]
00544
RansDecRenormSafe
[function]
[call site]
00545
fqz_decompress
[function]
[call site]
00546
uncompress_block_fqz2f
[function]
[call site]
00547
var_get_u32
[function]
[call site]
00548
fqz_read_parameters
[function]
[call site]
00549
read_array
[function]
[call site]
00550
fqz_read_parameters1
[function]
[call site]
00551
read_array
[function]
[call site]
00552
read_array
[function]
[call site]
00553
read_array
[function]
[call site]
00554
fqz_free_parameters
[function]
[call site]
00555
fqz_create_models
[function]
[call site]
00556
htscodecs_tls_alloc
[function]
[call site]
00557
SIMPLE_MODEL256_init
[function]
[call site]
00558
SIMPLE_MODEL256_init
[function]
[call site]
00559
SIMPLE_MODEL2_init
[function]
[call site]
00560
SIMPLE_MODEL2_init
[function]
[call site]
00561
SIMPLE_MODEL256_init
[function]
[call site]
00562
RC_SetInput
[function]
[call site]
00563
RC_StartDecode
[function]
[call site]
00564
realloc
[call site]
00565
realloc
[call site]
00566
decompress_new_read
[function]
[call site]
00567
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00568
RC_GetFreq
[function]
[call site]
00569
RC_Decode
[function]
[call site]
00570
SIMPLE_MODEL256_normalize
[function]
[call site]
00571
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00572
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00573
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00574
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00575
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00576
SIMPLE_MODEL2_normalize
[function]
[call site]
00577
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00578
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00579
fqz_update_ctx
[function]
[call site]
00580
realloc
[call site]
00581
realloc
[call site]
00582
RC_FinishDecode
[function]
[call site]
00583
fqz_destroy_models
[function]
[call site]
00584
htscodecs_tls_free
[function]
[call site]
00585
fqz_free_parameters
[function]
[call site]
00586
fqz_destroy_models
[function]
[call site]
00587
fqz_free_parameters
[function]
[call site]
00588
rans_uncompress_4x16
[function]
[call site]
00589
rans_uncompress_to_4x16
[function]
[call site]
00590
var_get_u32
[function]
[call site]
00591
var_get_u32
[function]
[call site]
00592
rans_uncompress_to_4x16
[function]
[call site]
00593
unstripe
[function]
[call site]
00594
var_get_u32
[function]
[call site]
00595
hts_unpack_meta
[function]
[call site]
00596
var_get_u32
[function]
[call site]
00597
var_get_u32
[function]
[call site]
00598
var_get_u32
[function]
[call site]
00599
var_get_u32
[function]
[call site]
00600
rans_dec_func
[function]
[call site]
00601
pthread_once
[call site]
00602
htscodecs_tls_cpu_init
[function]
[call site]
00603
__get_cpuid_max
[function]
[call site]
00604
not_ancient_darwin
[function]
[call site]
00605
strerror
[call site]
00606
fprintf
[call site]
00607
fprintf
[call site]
00608
rans_dec_func
[function]
[call site]
00609
hts_rle_decode
[function]
[call site]
00610
var_get_u32
[function]
[call site]
00611
hts_unpack
[function]
[call site]
00612
arith_uncompress_to
[function]
[call site]
00613
var_get_u32
[function]
[call site]
00614
var_get_u32
[function]
[call site]
00615
arith_uncompress_to
[function]
[call site]
00616
unstripe
[function]
[call site]
00617
var_get_u32
[function]
[call site]
00618
hts_unpack_meta
[function]
[call site]
00619
var_get_u32
[function]
[call site]
00620
BZ2_bzBuffToBuffDecompress
[call site]
00621
arith_uncompress_O1_RLE
[function]
[call site]
00622
htscodecs_tls_alloc
[function]
[call site]
00623
SIMPLE_MODEL256_init
[function]
[call site]
00624
htscodecs_tls_alloc
[function]
[call site]
00625
htscodecs_tls_free
[function]
[call site]
00626
SIMPLE_MODEL258_init
[function]
[call site]
00627
RC_SetInput
[function]
[call site]
00628
RC_StartDecode
[function]
[call site]
00629
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00630
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00631
SIMPLE_MODEL258_normalize
[function]
[call site]
00632
RC_FinishDecode
[function]
[call site]
00633
htscodecs_tls_free
[function]
[call site]
00634
htscodecs_tls_free
[function]
[call site]
00635
htscodecs_tls_free
[function]
[call site]
00636
htscodecs_tls_free
[function]
[call site]
00637
arith_uncompress_O0_RLE
[function]
[call site]
00638
SIMPLE_MODEL256_init
[function]
[call site]
00639
htscodecs_tls_alloc
[function]
[call site]
00640
SIMPLE_MODEL258_init
[function]
[call site]
00641
RC_SetInput
[function]
[call site]
00642
RC_StartDecode
[function]
[call site]
00643
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00644
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00645
RC_FinishDecode
[function]
[call site]
00646
htscodecs_tls_free
[function]
[call site]
00647
htscodecs_tls_free
[function]
[call site]
00648
arith_uncompress_O1
[function]
[call site]
00649
htscodecs_tls_alloc
[function]
[call site]
00650
SIMPLE_MODEL256_init
[function]
[call site]
00651
RC_SetInput
[function]
[call site]
00652
RC_StartDecode
[function]
[call site]
00653
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00654
RC_FinishDecode
[function]
[call site]
00655
htscodecs_tls_free
[function]
[call site]
00656
htscodecs_tls_free
[function]
[call site]
00657
arith_uncompress_O0
[function]
[call site]
00658
SIMPLE_MODEL256_init
[function]
[call site]
00659
RC_SetInput
[function]
[call site]
00660
RC_StartDecode
[function]
[call site]
00661
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00662
RC_FinishDecode
[function]
[call site]
00663
hts_unpack
[function]
[call site]
00664
tok3_decode_names
[function]
[call site]
00665
create_context
[function]
[call site]
00666
fprintf
[call site]
00667
htscodecs_tls_alloc
[function]
[call site]
00668
uncompressed_size
[function]
[call site]
00669
var_get_u32
[function]
[call site]
00670
var_get_u32
[function]
[call site]
00671
uncompress
[function]
[call site]
00672
var_get_u32
[function]
[call site]
00673
arith_decode
[function]
[call site]
00674
var_get_u32
[function]
[call site]
00675
arith_uncompress_to
[function]
[call site]
00676
rans_decode
[function]
[call site]
00677
var_get_u32
[function]
[call site]
00678
rans_uncompress_to_4x16
[function]
[call site]
00679
decode_name
[function]
[call site]
00680
decode_token_type
[function]
[call site]
00681
decode_token_int
[function]
[call site]
00682
strlen
[call site]
00683
strcpy
[call site]
00684
strlen
[call site]
00685
decode_token_type
[function]
[call site]
00686
decode_token_char
[function]
[call site]
00687
decode_token_alpha
[function]
[call site]
00688
decode_token_int1
[function]
[call site]
00689
decode_token_int
[function]
[call site]
00690
append_uint32_fixed
[function]
[call site]
00691
decode_token_int1
[function]
[call site]
00692
append_uint32_fixed
[function]
[call site]
00693
decode_token_int
[function]
[call site]
00694
append_uint32_var
[function]
[call site]
00695
decode_token_int1
[function]
[call site]
00696
append_uint32_var
[function]
[call site]
00697
append_uint32_var
[function]
[call site]
00698
append_uint32_fixed
[function]
[call site]
00699
realloc
[call site]
00700
free_context
[function]
[call site]
00701
pool_destroy
[function]
[call site]
00702
htscodecs_tls_free
[function]
[call site]
00703
free_context
[function]
[call site]
00704
cram_free_container
[function]
[call site]
00705
cram_free_block
[function]
[call site]
00706
int32_get_blk
[function]
[call site]
00707
cram_free_container
[function]
[call site]
00708
cram_free_block
[function]
[call site]
00709
cram_free_container
[function]
[call site]
00710
cram_free_block
[function]
[call site]
00711
cram_free_block
[function]
[call site]
00712
cram_read_block
[function]
[call site]
00713
cram_free_container
[function]
[call site]
00714
cram_free_block
[function]
[call site]
00715
cram_free_container
[function]
[call site]
00716
hread
[function]
[call site]
00717
cram_free_container
[function]
[call site]
00718
cram_free_container
[function]
[call site]
00719
sam_hdr_init
[function]
[call site]
00720
calloc
[call site]
00721
sam_hdr_add_lines
[function]
[call site]
00722
sam_hdr_fill_hrecs
[function]
[call site]
00723
sam_hrecs_new
[function]
[call site]
00724
calloc
[call site]
00725
kh_init_sam_hrecs_t
[function]
[call site]
00726
calloc
[call site]
00727
kh_init_m_s2i
[function]
[call site]
00728
calloc
[call site]
00729
kh_init_m_s2i
[function]
[call site]
00730
kh_init_m_s2i
[function]
[call site]
00731
pool_create
[function]
[call site]
00732
next_power_2
[function]
[call site]
00733
pool_create
[function]
[call site]
00734
string_pool_create
[function]
[call site]
00735
sam_hrecs_init_type_order
[function]
[call site]
00736
calloc
[call site]
00737
kh_destroy_sam_hrecs_t
[function]
[call site]
00738
pool_destroy
[function]
[call site]
00739
pool_destroy
[function]
[call site]
00740
string_pool_destroy
[function]
[call site]
00741
sam_hrecs_refs_from_targets_array
[function]
[call site]
00742
hts_log
[function]
[call site]
00743
hts_realloc_p
[function]
[call site]
00744
hts_prod_sat2
[function]
[call site]
00745
hts_realloc
[function]
[call site]
00746
__errno_location
[call site]
00747
realloc
[call site]
00748
kh_grow_to_fit_m_s2i
[function]
[call site]
00749
kh_resize_m_s2i
[function]
[call site]
00750
__errno_location
[call site]
00751
__ac_FNV1a_hash_string
[function]
[call site]
00752
string_dup
[function]
[call site]
00753
strlen
[call site]
00754
string_ndup
[function]
[call site]
00755
string_alloc
[function]
[call site]
00756
new_string_pool
[function]
[call site]
00757
hts_realloc_p
[function]
[call site]
00758
hts_prod_sat2
[function]
[call site]
00759
hts_realloc
[function]
[call site]
00760
hts_malloc
[function]
[call site]
00761
kh_get_s2i
[function]
[call site]
00762
__ac_FNV1a_hash_string
[function]
[call site]
00763
strcmp
[call site]
00764
kh_put_m_s2i
[function]
[call site]
00765
strcmp
[call site]
00766
hts_log
[function]
[call site]
00767
__errno_location
[call site]
00768
strerror
[call site]
00769
hts_log
[function]
[call site]
00770
kh_get_m_s2i
[function]
[call site]
00771
kh_del_m_s2i
[function]
[call site]
00772
sam_hrecs_free
[function]
[call site]
00773
kh_destroy_sam_hrecs_t
[function]
[call site]
00774
kh_destroy_m_s2i
[function]
[call site]
00775
kh_destroy_m_s2i
[function]
[call site]
00776
kh_destroy_m_s2i
[function]
[call site]
00777
pool_destroy
[function]
[call site]
00778
pool_destroy
[function]
[call site]
00779
string_pool_destroy
[function]
[call site]
00780
sam_hrecs_parse_lines
[function]
[call site]
00781
strlen
[call site]
00782
sam_hrecs_error
[function]
[call site]
00783
hts_log
[function]
[call site]
00784
sam_hrecs_parse_single_line
[function]
[call site]
00785
sam_hrecs_error
[function]
[call site]
00786
isalpha_c
[function]
[call site]
00787
__ctype_b_loc
[call site]
00788
sam_hrecs_error
[function]
[call site]
00789
TYPEKEY
[function]
[call site]
00790
pool_alloc
[function]
[call site]
00791
new_pool
[function]
[call site]
00792
hts_realloc_ps
[function]
[call site]
00793
hts_add_sat2
[function]
[call site]
00794
hts_prod_sat2
[function]
[call site]
00795
hts_realloc
[function]
[call site]
00796
hts_malloc_p
[function]
[call site]
00797
kh_put_sam_hrecs_t
[function]
[call site]
00798
kh_resize_sam_hrecs_t
[function]
[call site]
00799
realloc
[call site]
00800
TYPEKEY
[function]
[call site]
00801
parse_comment_line
[function]
[call site]
00802
sam_hrecs_error
[function]
[call site]
00803
warn_if_known_stderr
[function]
[call site]
00804
kmemmem
[function]
[call site]
00805
boyer_moore
[function]
[call site]
00806
memchr
[call site]
00807
ksBM_prep
[function]
[call site]
00808
hts_calloc_ps
[function]
[call site]
00809
hts_add_sat2
[function]
[call site]
00810
hts_calloc
[function]
[call site]
00811
__errno_location
[call site]
00812
calloc
[call site]
00813
calloc
[call site]
00814
karp_rabin
[function]
[call site]
00815
fast_exp
[function]
[call site]
00816
memcmp
[call site]
00817
known_stderr
[function]
[call site]
00818
hts_log
[function]
[call site]
00819
hts_log
[function]
[call site]
00820
kmemmem
[function]
[call site]
00821
known_stderr
[function]
[call site]
00822
kmemmem
[function]
[call site]
00823
known_stderr
[function]
[call site]
00824
pool_alloc
[function]
[call site]
00825
string_ndup
[function]
[call site]
00826
parse_noncomment_line
[function]
[call site]
00827
TYPEKEY
[function]
[call site]
00828
sam_hrecs_error
[function]
[call site]
00829
warn_if_known_stderr
[function]
[call site]
00830
sam_hrecs_error
[function]
[call site]
00831
warn_if_known_stderr
[function]
[call site]
00832
pool_alloc
[function]
[call site]
00833
string_ndup
[function]
[call site]
00834
sam_hrecs_global_list_add
[function]
[call site]
00835
TYPEKEY
[function]
[call site]
00836
__assert_fail
[call site]
00837
sam_hrecs_free_tags
[function]
[call site]
00838
sam_hrecs_free_tags
[function]
[call site]
00839
pool_free
[function]
[call site]
00840
pool_free
[function]
[call site]
00841
TYPEKEY
[function]
[call site]
00842
kh_grow_to_fit_m_s2i
[function]
[call site]
00843
hts_realloc_p
[function]
[call site]
00844
sam_hrecs_update_hashes
[function]
[call site]
00845
TYPEKEY
[function]
[call site]
00846
__assert_fail
[call site]
00847
__assert_fail
[call site]
00848
strtoll
[call site]
00849
__assert_fail
[call site]
00850
hts_log
[function]
[call site]
00851
hts_log
[function]
[call site]
00852
hts_log
[function]
[call site]
00853
kh_get_m_s2i
[function]
[call site]
00854
snprintf
[call site]
00855
sam_hrecs_update
[function]
[call site]
00856
sam_hrecs_vupdate
[function]
[call site]
00857
sam_hrecs_find_key
[function]
[call site]
00858
pool_alloc
[function]
[call site]
00859
strlen
[call site]
00860
hts_add_sat2
[function]
[call site]
00861
string_alloc
[function]
[call site]
00862
snprintf
[call site]
00863
sam_hrecs_add_ref_altnames
[function]
[call site]
00864
kstrtok
[function]
[call site]
00865
strchr
[call site]
00866
strlen
[call site]
00867
string_ndup
[function]
[call site]
00868
kh_put_m_s2i
[function]
[call site]
00869
hts_log
[function]
[call site]
00870
strcmp
[call site]
00871
sam_hrecs_add_ref_altnames
[function]
[call site]
00872
strcmp
[call site]
00873
hts_log
[function]
[call site]
00874
hts_log
[function]
[call site]
00875
hts_realloc_p
[function]
[call site]
00876
kh_put_m_s2i
[function]
[call site]
00877
sam_hrecs_add_ref_altnames
[function]
[call site]
00878
TYPEKEY
[function]
[call site]
00879
sam_hrecs_find_key
[function]
[call site]
00880
hts_log
[function]
[call site]
00881
__assert_fail
[call site]
00882
kh_get_m_s2i
[function]
[call site]
00883
__assert_fail
[call site]
00884
hts_log
[function]
[call site]
00885
hts_realloc_p
[function]
[call site]
00886
kh_put_m_s2i
[function]
[call site]
00887
TYPEKEY
[function]
[call site]
00888
hts_realloc_p
[function]
[call site]
00889
__assert_fail
[call site]
00890
hts_log
[function]
[call site]
00891
kh_get_m_s2i
[function]
[call site]
00892
kh_put_m_s2i
[function]
[call site]
00893
hts_realloc_p
[function]
[call site]
00894
sam_hrecs_free
[function]
[call site]
00895
add_stub_ref_sq_lines
[function]
[call site]
00896
snprintf
[call site]
00897
sam_hrecs_add
[function]
[call site]
00898
sam_hrecs_vadd
[function]
[call site]
00899
TYPEKEY
[function]
[call site]
00900
strncmp
[call site]
00901
sam_hrecs_find_type_id
[function]
[call site]
00902
kh_get_m_s2i
[function]
[call site]
00903
kh_get_m_s2i
[function]
[call site]
00904
kh_get_m_s2i
[function]
[call site]
00905
TYPEKEY
[function]
[call site]
00906
kh_get_sam_hrecs_t
[function]
[call site]
00907
sam_hrecs_vupdate
[function]
[call site]
00908
pool_alloc
[function]
[call site]
00909
kh_put_sam_hrecs_t
[function]
[call site]
00910
__assert_fail
[call site]
00911
sam_hrecs_global_list_add
[function]
[call site]
00912
__assert_fail
[call site]
00913
__assert_fail
[call site]
00914
__assert_fail
[call site]
00915
__assert_fail
[call site]
00916
strncmp
[call site]
00917
pool_alloc
[function]
[call site]
00918
strncmp
[call site]
00919
strlen
[call site]
00920
hts_add_sat2
[function]
[call site]
00921
string_alloc
[function]
[call site]
00922
snprintf
[call site]
00923
strlen
[call site]
00924
string_ndup
[function]
[call site]
00925
strncmp
[call site]
00926
pool_alloc
[function]
[call site]
00927
strncmp
[call site]
00928
strlen
[call site]
00929
hts_add_sat2
[function]
[call site]
00930
string_alloc
[function]
[call site]
00931
snprintf
[call site]
00932
strlen
[call site]
00933
string_ndup
[function]
[call site]
00934
TYPEKEY
[function]
[call site]
00935
sam_hrecs_update_hashes
[function]
[call site]
00936
strncmp
[call site]
00937
hts_log
[function]
[call site]
00938
sam_hrecs_free
[function]
[call site]
00939
rebuild_target_arrays
[function]
[call site]
00940
sam_hdr_update_target_arrays
[function]
[call site]
00941
hts_realloc_p
[function]
[call site]
00942
hts_realloc_p
[function]
[call site]
00943
strcmp
[call site]
00944
strdup
[call site]
00945
kh_get_s2i
[function]
[call site]
00946
kh_del_s2i
[function]
[call site]
00947
kh_init_s2i
[function]
[call site]
00948
calloc
[call site]
00949
kh_put_s2i
[function]
[call site]
00950
kh_resize_s2i
[function]
[call site]
00951
__errno_location
[call site]
00952
realloc
[call site]
00953
kh_get_s2i
[function]
[call site]
00954
kh_del_s2i
[function]
[call site]
00955
sam_hrecs_parse_lines
[function]
[call site]
00956
rebuild_target_arrays
[function]
[call site]
00957
redact_header_text
[function]
[call site]
00958
__assert_fail
[call site]
00959
sam_hdr_destroy
[function]
[call site]
00960
sam_hrecs_free
[function]
[call site]
00961
kh_destroy_s2i
[function]
[call site]
00962
cram_free_file_def
[function]
[call site]
00963
calloc
[call site]
00964
strncpy
[call site]
00965
cram_init_tables
[function]
[call site]
00966
strrchr
[call site]
00967
strdup
[call site]
00968
refs_create
[function]
[call site]
00969
calloc
[call site]
00970
string_pool_create
[function]
[call site]
00971
kh_init_refs
[function]
[call site]
00972
calloc
[call site]
00973
pthread_mutex_init
[call site]
00974
refs_free
[function]
[call site]
00975
string_pool_destroy
[function]
[call site]
00976
ref_entry_free_seq
[function]
[call site]
00977
mfclose
[function]
[call site]
00978
mfflush
[function]
[call site]
00979
fwrite
[call site]
00980
fflush
[call site]
00981
fseek
[call site]
00982
fwrite
[call site]
00983
fflush
[call site]
00984
ftell
[call site]
00985
fileno
[call site]
00986
ftell
[call site]
00987
ftruncate
[call site]
00988
munmap
[call site]
00989
fclose
[call site]
00990
mfdestroy
[function]
[call site]
00991
kh_destroy_refs
[function]
[call site]
00992
bgzf_close
[function]
[call site]
00993
bgzf_flush
[function]
[call site]
00994
mt_queue
[function]
[call site]
00995
pthread_mutex_lock
[call site]
00996
pool_alloc
[function]
[call site]
00997
pthread_mutex_unlock
[call site]
00998
hts_tpool_dispatch3
[function]
[call site]
00999
pthread_mutex_lock
[call site]
01000
pthread_mutex_unlock
[call site]
01001
__errno_location
[call site]
01002
pthread_mutex_unlock
[call site]
01003
pthread_cond_wait
[call site]
01004
pthread_mutex_unlock
[call site]
01005
wake_next_worker
[function]
[call site]
01006
pthread_mutex_lock
[call site]
01007
__assert_fail
[call site]
01008
__assert_fail
[call site]
01009
pthread_cond_signal
[call site]
01010
pthread_mutex_unlock
[call site]
01011
pthread_mutex_unlock
[call site]
01012
bgzf_encode_level0_func
[function]
[call site]
01013
u16_to_le
[function]
[call site]
01014
u16_to_le
[function]
[call site]
01015
u16_to_le
[function]
[call site]
01016
hts_crc32
[function]
[call site]
01017
crc32
[call site]
01018
u32_to_le
[function]
[call site]
01019
u32_to_le
[function]
[call site]
01020
job_cleanup
[function]
[call site]
01021
pthread_mutex_lock
[call site]
01022
pool_free
[function]
[call site]
01023
pthread_mutex_unlock
[call site]
01024
hts_tpool_dispatch3
[function]
[call site]
01025
bgzf_encode_func
[function]
[call site]
01026
bgzf_compress
[function]
[call site]
01027
u16_to_le
[function]
[call site]
01028
u16_to_le
[function]
[call site]
01029
deflateInit2_
[call site]
01030
bgzf_zerr
[function]
[call site]
01031
hts_log
[function]
[call site]
01032
deflate
[call site]
01033
deflateEnd
[call site]
01034
bgzf_zerr
[function]
[call site]
01035
hts_log
[function]
[call site]
01036
deflateEnd
[call site]
01037
deflateEnd
[call site]
01038
bgzf_zerr
[function]
[call site]
01039
hts_log
[function]
[call site]
01040
packInt16
[function]
[call site]
01041
crc32
[call site]
01042
packInt32
[function]
[call site]
01043
packInt32
[function]
[call site]
01044
job_cleanup
[function]
[call site]
01045
job_cleanup
[function]
[call site]
01046
pthread_mutex_lock
[call site]
01047
pthread_mutex_unlock
[call site]
01048
mt_flush_queue
[function]
[call site]
01049
pthread_mutex_lock
[call site]
01050
hts_tpool_process_is_shutdown
[function]
[call site]
01051
pthread_mutex_lock
[call site]
01052
pthread_mutex_unlock
[call site]
01053
pthread_mutex_unlock
[call site]
01054
hts_usleep
[function]
[call site]
01055
nanosleep
[call site]
01056
pthread_mutex_lock
[call site]
01057
pthread_mutex_unlock
[call site]
01058
hts_tpool_process_flush
[function]
[call site]
01059
pthread_mutex_lock
[call site]
01060
pthread_cond_signal
[call site]
01061
pthread_cond_wait
[call site]
01062
gettimeofday
[call site]
01063
pthread_cond_timedwait
[call site]
01064
gettimeofday
[call site]
01065
pthread_cond_timedwait
[call site]
01066
pthread_mutex_unlock
[call site]
01067
pthread_mutex_lock
[call site]
01068
pthread_mutex_unlock
[call site]
01069
hflush
[function]
[call site]
01070
flush_buffer
[function]
[call site]
01071
__errno_location
[call site]
01072
bgzf_index_add_block
[function]
[call site]
01073
bgzf_index_grow
[function]
[call site]
01074
hts_realloc_p
[function]
[call site]
01075
deflate_block
[function]
[call site]
01076
bgzf_compress
[function]
[call site]
01077
bgzf_gzip_compress
[function]
[call site]
01078
deflate
[call site]
01079
bgzf_zerr
[function]
[call site]
01080
hts_log
[function]
[call site]
01081
hts_log
[function]
[call site]
01082
hts_log
[function]
[call site]
01083
bgzf_zerr
[function]
[call site]
01084
hts_log
[function]
[call site]
01085
hwrite
[function]
[call site]
01086
hfile_set_blksize
[function]
[call site]
01087
realloc
[call site]
01088
hwrite2
[function]
[call site]
01089
flush_buffer
[function]
[call site]
01090
__errno_location
[call site]
01091
hwrite2
[function]
[call site]
01092
hts_log
[function]
[call site]
01093
bgzf_close_mt
[function]
[call site]
01094
mt_destroy
[function]
[call site]
01095
pthread_mutex_lock
[call site]
01096
pthread_cond_signal
[call site]
01097
hts_tpool_wake_dispatch
[function]
[call site]
01098
pthread_mutex_lock
[call site]
01099
pthread_cond_signal
[call site]
01100
pthread_mutex_unlock
[call site]
01101
pthread_mutex_unlock
[call site]
01102
hts_tpool_process_is_shutdown
[function]
[call site]
01103
hts_tpool_process_destroy
[function]
[call site]
01104
pthread_mutex_lock
[call site]
01105
pthread_mutex_unlock
[call site]
01106
hts_tpool_process_reset
[function]
[call site]
01107
pthread_mutex_lock
[call site]
01108
pthread_mutex_unlock
[call site]
01109
hts_tpool_delete_result
[function]
[call site]
01110
hts_tpool_process_flush
[function]
[call site]
01111
pthread_mutex_lock
[call site]
01112
pthread_cond_signal
[call site]
01113
pthread_mutex_unlock
[call site]
01114
hts_tpool_delete_result
[function]
[call site]
01115
pthread_mutex_lock
[call site]
01116
hts_tpool_process_detach_locked
[function]
[call site]
01117
hts_tpool_process_shutdown_locked
[function]
[call site]
01118
pthread_cond_broadcast
[call site]
01119
pthread_cond_broadcast
[call site]
01120
pthread_cond_broadcast
[call site]
01121
pthread_cond_broadcast
[call site]
01122
pthread_mutex_unlock
[call site]
01123
pthread_cond_destroy
[call site]
01124
pthread_cond_destroy
[call site]
01125
pthread_cond_destroy
[call site]
01126
pthread_cond_destroy
[call site]
01127
pthread_mutex_unlock
[call site]
01128
pthread_join
[call site]
01129
pthread_mutex_destroy
[call site]
01130
pthread_mutex_destroy
[call site]
01131
pthread_mutex_destroy
[call site]
01132
pthread_cond_destroy
[call site]
01133
pool_free
[function]
[call site]
01134
hts_tpool_destroy
[function]
[call site]
01135
pthread_mutex_lock
[call site]
01136
pthread_cond_signal
[call site]
01137
pthread_mutex_unlock
[call site]
01138
pthread_join
[call site]
01139
pthread_mutex_destroy
[call site]
01140
pthread_cond_destroy
[call site]
01141
pool_destroy
[function]
[call site]
01142
fflush
[call site]
01143
deflate_block
[function]
[call site]
01144
bgzf_zerr
[function]
[call site]
01145
hts_log
[function]
[call site]
01146
bgzf_close_mt
[function]
[call site]
01147
hwrite
[function]
[call site]
01148
hflush
[function]
[call site]
01149
hts_log
[function]
[call site]
01150
bgzf_close_mt
[function]
[call site]
01151
inflateEnd
[call site]
01152
deflateEnd
[call site]
01153
bgzf_zerr
[function]
[call site]
01154
hts_log
[function]
[call site]
01155
hclose
[function]
[call site]
01156
writebuffer_is_nonempty
[function]
[call site]
01157
hflush
[function]
[call site]
01158
__errno_location
[call site]
01159
hfile_destroy
[function]
[call site]
01160
__errno_location
[call site]
01161
bgzf_index_destroy
[function]
[call site]
01162
free_cache
[function]
[call site]
01163
kh_destroy_bgzf_cache
[function]
[call site]
01164
bgzf_clear_private_data
[function]
[call site]
01165
__assert_fail
[call site]
01166
pthread_mutex_destroy
[call site]
01167
pthread_mutex_init
[call site]
01168
pthread_mutex_init
[call site]
01169
pthread_mutex_init
[call site]
01170
pthread_mutex_init
[call site]
01171
cram_new_metrics
[function]
[call site]
01172
calloc
[call site]
01173
kh_init_m_metrics
[function]
[call site]
01174
calloc
[call site]
01175
refs_from_header
[function]
[call site]
01176
sam_hdr_fill_hrecs
[function]
[call site]
01177
hts_realloc_ps
[function]
[call site]
01178
kh_get_refs
[function]
[call site]
01179
__ac_FNV1a_hash_string
[function]
[call site]
01180
strcmp
[call site]
01181
calloc
[call site]
01182
string_dup
[function]
[call site]
01183
sam_hrecs_find_type_id
[function]
[call site]
01184
sam_hrecs_find_key
[function]
[call site]
01185
string_dup
[function]
[call site]
01186
sam_hrecs_find_key
[function]
[call site]
01187
strtoll
[call site]
01188
kh_put_refs
[function]
[call site]
01189
kh_resize_refs
[function]
[call site]
01190
__errno_location
[call site]
01191
realloc
[call site]
01192
cram_set_option
[function]
[call site]
01193
cram_set_voption
[function]
[call site]
01194
__errno_location
[call site]
01195
strdup
[call site]
01196
refs_free
[function]
[call site]
01197
cram_seek_to_refpos
[function]
[call site]
01198
cram_index_query
[function]
[call site]
01199
cram_seek
[function]
[call site]
01200
cram_drain_rqueue
[function]
[call site]
01201
hts_tpool_process_empty
[function]
[call site]
01202
pthread_mutex_lock
[call site]
01203
pthread_mutex_unlock
[call site]
01204
hts_tpool_next_result_wait
[function]
[call site]
01205
pthread_mutex_lock
[call site]
01206
hts_tpool_next_result_locked
[function]
[call site]
01207
pthread_cond_signal
[call site]
01208
wake_next_worker
[function]
[call site]
01209
gettimeofday
[call site]
01210
pthread_mutex_unlock
[call site]
01211
hts_tpool_process_destroy
[function]
[call site]
01212
pthread_cond_timedwait
[call site]
01213
pthread_mutex_unlock
[call site]
01214
hts_tpool_result_data
[function]
[call site]
01215
cram_free_container
[function]
[call site]
01216
cram_free_slice
[function]
[call site]
01217
hts_tpool_delete_result
[function]
[call site]
01218
cram_free_container
[function]
[call site]
01219
cram_free_slice
[function]
[call site]
01220
cram_free_container
[function]
[call site]
01221
hseek
[function]
[call site]
01222
pthread_mutex_lock
[call site]
01223
pthread_mutex_unlock
[call site]
01224
cram_free_container
[function]
[call site]
01225
cram_free_container
[function]
[call site]
01226
pthread_mutex_lock
[call site]
01227
pthread_mutex_unlock
[call site]
01228
pthread_mutex_lock
[call site]
01229
pthread_mutex_unlock
[call site]
01230
pthread_mutex_lock
[call site]
01231
pthread_mutex_unlock
[call site]
01232
cram_load_reference
[function]
[call site]
01233
refs_load_fai
[function]
[call site]
01234
strlen
[call site]
01235
refs_create
[function]
[call site]
01236
bgzf_close
[function]
[call site]
01237
strstr
[call site]
01238
string_ndup
[function]
[call site]
01239
snprintf
[call site]
01240
strcmp
[call site]
01241
string_ndup
[function]
[call site]
01242
snprintf
[call site]
01243
string_dup
[function]
[call site]
01244
snprintf
[call site]
01245
bgzf_open_ref
[function]
[call site]
01246
strncmp
[call site]
01247
hisremote
[function]
[call site]
01248
find_scheme_handler
[function]
[call site]
01249
snprintf
[call site]
01250
access
[call site]
01251
fai_build
[function]
[call site]
01252
fai_build3
[function]
[call site]
01253
fai_build3_core
[function]
[call site]
01254
bgzf_open
[function]
[call site]
01255
strchr
[call site]
01256
hopen
[function]
[call site]
01257
bgzf_read_init
[function]
[call site]
01258
hclose_abruptly
[function]
[call site]
01259
strchr
[call site]
01260
hopen
[function]
[call site]
01261
bgzf_write_init
[function]
[call site]
01262
__errno_location
[call site]
01263
ed_is_big
[function]
[call site]
01264
__errno_location
[call site]
01265
strerror
[call site]
01266
hts_log
[function]
[call site]
01267
bgzf_index_build_init
[function]
[call site]
01268
bgzf_index_destroy
[function]
[call site]
01269
calloc
[call site]
01270
hts_log
[function]
[call site]
01271
fai_build_core
[function]
[call site]
01272
calloc
[call site]
01273
kh_init_s
[function]
[call site]
01274
bgzf_getc_
[function]
[call site]
01275
bgzf_getc
[function]
[call site]
01276
bgzf_read_block
[function]
[call site]
01277
hts_tpool_next_result_wait
[function]
[call site]
01278
hts_tpool_result_data
[function]
[call site]
01279
hts_malloc_p
[function]
[call site]
01280
mt_destroy
[function]
[call site]
01281
hts_log
[function]
[call site]
01282
hts_tpool_delete_result
[function]
[call site]
01283
hts_log
[function]
[call site]
01284
hts_tpool_delete_result
[function]
[call site]
01285
bgzf_index_add_block
[function]
[call site]
01286
hts_tpool_delete_result
[function]
[call site]
01287
pthread_mutex_lock
[call site]
01288
pool_free
[function]
[call site]
01289
pthread_mutex_unlock
[call site]
01290
hts_tpool_delete_result
[function]
[call site]
01291
bgzf_htell
[function]
[call site]
01292
pthread_mutex_lock
[call site]
01293
pthread_mutex_unlock
[call site]
01294
htell
[function]
[call site]
01295
hread
[function]
[call site]
01296
__errno_location
[call site]
01297
strerror
[call site]
01298
hts_log
[function]
[call site]
01299
inflate_gzip_block
[function]
[call site]
01300
hread
[function]
[call site]
01301
inflate
[call site]
01302
bgzf_zerr
[function]
[call site]
01303
hts_log
[function]
[call site]
01304
hpeek
[function]
[call site]
01305
inflateReset
[call site]
01306
bgzf_zerr
[function]
[call site]
01307
hts_log
[function]
[call site]
01308
hts_log
[function]
[call site]
01309
hts_log
[function]
[call site]
01310
load_block_from_cache
[function]
[call site]
01311
kh_get_bgzf_cache
[function]
[call site]
01312
hseek
[function]
[call site]
01313
hts_log
[function]
[call site]
01314
exit
[call site]
01315
hread
[function]
[call site]
01316
hts_log
[function]
[call site]
01317
check_header
[function]
[call site]
01318
unpackInt16
[function]
[call site]
01319
unpackInt16
[function]
[call site]
01320
hts_log
[function]
[call site]
01321
hread
[function]
[call site]
01322
calloc
[call site]
01323
inflateInit2_
[call site]
01324
bgzf_zerr
[function]
[call site]
01325
inflate_gzip_block
[function]
[call site]
01326
hts_log
[function]
[call site]
01327
unpackInt16
[function]
[call site]
01328
hts_log
[function]
[call site]
01329
hread
[function]
[call site]
01330
hts_log
[function]
[call site]
01331
inflate_block
[function]
[call site]
01332
le_to_u32
[function]
[call site]
01333
bgzf_uncompress
[function]
[call site]
01334
inflateInit2_
[call site]
01335
bgzf_zerr
[function]
[call site]
01336
hts_log
[function]
[call site]
01337
inflate
[call site]
01338
bgzf_zerr
[function]
[call site]
01339
hts_log
[function]
[call site]
01340
inflateEnd
[call site]
01341
bgzf_zerr
[function]
[call site]
01342
hts_log
[function]
[call site]
01343
inflateEnd
[call site]
01344
bgzf_zerr
[function]
[call site]
01345
hts_log
[function]
[call site]
01346
crc32
[call site]
01347
hts_log
[function]
[call site]
01348
bgzf_zerr
[function]
[call site]
01349
hts_log
[function]
[call site]
01350
bgzf_htell
[function]
[call site]
01351
bgzf_index_add_block
[function]
[call site]
01352
cache_block
[function]
[call site]
01353
kh_del_bgzf_cache
[function]
[call site]
01354
kh_put_bgzf_cache
[function]
[call site]
01355
kh_resize_bgzf_cache
[function]
[call site]
01356
__errno_location
[call site]
01357
realloc
[call site]
01358
bgzf_htell
[function]
[call site]
01359
hts_log
[function]
[call site]
01360
hts_log
[function]
[call site]
01361
bgzf_getc_
[function]
[call site]
01362
hts_log
[function]
[call site]
01363
__ctype_b_loc
[call site]
01364
hts_log
[function]
[call site]
01365
fai_insert_index
[function]
[call site]
01366
hts_log
[function]
[call site]
01367
hts_log
[function]
[call site]
01368
hts_log
[function]
[call site]
01369
hts_log
[function]
[call site]
01370
hts_realloc_p
[function]
[call site]
01371
hts_log
[function]
[call site]
01372
strdup
[call site]
01373
__errno_location
[call site]
01374
strerror
[call site]
01375
hts_log
[function]
[call site]
01376
kh_put_s
[function]
[call site]
01377
kh_resize_s
[function]
[call site]
01378
__ac_FNV1a_hash_string
[function]
[call site]
01379
__errno_location
[call site]
01380
strerror
[call site]
01381
hts_log
[function]
[call site]
01382
hts_log
[function]
[call site]
01383
__ctype_b_loc
[call site]
01384
kputc_
[function]
[call site]
01385
ks_resize
[function]
[call site]
01386
bgzf_getc_
[function]
[call site]
01387
kputsn
[function]
[call site]
01388
hts_log
[function]
[call site]
01389
bgzf_getc_
[function]
[call site]
01390
bgzf_utell
[function]
[call site]
01391
bgzf_getc_
[function]
[call site]
01392
bgzf_utell
[function]
[call site]
01393
hts_log
[function]
[call site]
01394
isgraph_
[function]
[call site]
01395
bgzf_getc_
[function]
[call site]
01396
hts_log
[function]
[call site]
01397
bgzf_getc_
[function]
[call site]
01398
bgzf_utell
[function]
[call site]
01399
hts_log
[function]
[call site]
01400
hts_log
[function]
[call site]
01401
isgraph_
[function]
[call site]
01402
bgzf_getc_
[function]
[call site]
01403
hts_log
[function]
[call site]
01404
hts_log
[function]
[call site]
01405
fai_insert_index
[function]
[call site]
01406
hts_log
[function]
[call site]
01407
fai_destroy
[function]
[call site]
01408
kh_destroy_s
[function]
[call site]
01409
bgzf_close
[function]
[call site]
01410
hts_log
[function]
[call site]
01411
ksprintf
[function]
[call site]
01412
ksprintf
[function]
[call site]
01413
bgzf_index_dump
[function]
[call site]
01414
hts_log
[function]
[call site]
01415
__errno_location
[call site]
01416
get_name_suffix
[function]
[call site]
01417
strlen
[call site]
01418
snprintf
[call site]
01419
hopen
[function]
[call site]
01420
bgzf_index_dump_hfile
[function]
[call site]
01421
hts_log
[function]
[call site]
01422
__errno_location
[call site]
01423
bgzf_flush
[function]
[call site]
01424
hwrite_uint64
[function]
[call site]
01425
ed_is_big
[function]
[call site]
01426
ed_swap_8
[function]
[call site]
01427
hwrite
[function]
[call site]
01428
hwrite_uint64
[function]
[call site]
01429
hwrite_uint64
[function]
[call site]
01430
__errno_location
[call site]
01431
strerror
[call site]
01432
hts_log
[function]
[call site]
01433
hclose
[function]
[call site]
01434
__errno_location
[call site]
01435
strerror
[call site]
01436
hts_log
[function]
[call site]
01437
hclose_abruptly
[function]
[call site]
01438
hts_log
[function]
[call site]
01439
bgzf_close
[function]
[call site]
01440
__errno_location
[call site]
01441
strerror
[call site]
01442
hts_log
[function]
[call site]
01443
hopen
[function]
[call site]
01444
__errno_location
[call site]
01445
strerror
[call site]
01446
hts_log
[function]
[call site]
01447
fai_save
[function]
[call site]
01448
kh_get_s
[function]
[call site]
01449
__assert_fail
[call site]
01450
snprintf
[call site]
01451
snprintf
[call site]
01452
hputs
[function]
[call site]
01453
strlen
[call site]
01454
hputs2
[function]
[call site]
01455
hwrite2
[function]
[call site]
01456
hputs
[function]
[call site]
01457
strerror
[call site]
01458
hts_log
[function]
[call site]
01459
hclose
[function]
[call site]
01460
__errno_location
[call site]
01461
strerror
[call site]
01462
hts_log
[function]
[call site]
01463
fai_destroy
[function]
[call site]
01464
__errno_location
[call site]
01465
bgzf_close
[function]
[call site]
01466
fai_destroy
[function]
[call site]
01467
__errno_location
[call site]
01468
bgzf_open
[function]
[call site]
01469
perror
[call site]
01470
bgzf_index_load
[function]
[call site]
01471
get_name_suffix
[function]
[call site]
01472
hopen
[function]
[call site]
01473
bgzf_index_load_hfile
[function]
[call site]
01474
calloc
[call site]
01475
hread_uint64
[function]
[call site]
01476
hread
[function]
[call site]
01477
ed_is_big
[function]
[call site]
01478
ed_swap_8p
[function]
[call site]
01479
hread_uint64
[function]
[call site]
01480
hread_uint64
[function]
[call site]
01481
__errno_location
[call site]
01482
strerror
[call site]
01483
hts_log
[function]
[call site]
01484
hclose
[function]
[call site]
01485
__errno_location
[call site]
01486
strerror
[call site]
01487
hts_log
[function]
[call site]
01488
hclose_abruptly
[function]
[call site]
01489
hts_log
[function]
[call site]
01490
bgzf_close
[function]
[call site]
01491
hts_log
[function]
[call site]
01492
hopen
[function]
[call site]
01493
hts_log
[function]
[call site]
01494
perror
[call site]
01495
hgets
[function]
[call site]
01496
__errno_location
[call site]
01497
hgetln
[function]
[call site]
01498
hgetdelim
[function]
[call site]
01499
__errno_location
[call site]
01500
writebuffer_is_nonempty
[function]
[call site]
01501
__errno_location
[call site]
01502
memchr
[call site]
01503
refill_buffer
[function]
[call site]
01504
isspace_c
[function]
[call site]
01505
string_dup
[function]
[call site]
01506
isspace_c
[function]
[call site]
01507
strtoll
[call site]
01508
isspace_c
[function]
[call site]
01509
strtoll
[call site]
01510
isspace_c
[function]
[call site]
01511
strtol
[call site]
01512
isspace_c
[function]
[call site]
01513
strtol
[call site]
01514
kh_put_refs
[function]
[call site]
01515
hts_realloc_p
[function]
[call site]
01516
hclose
[function]
[call site]
01517
hclose_abruptly
[function]
[call site]
01518
refs_free
[function]
[call site]
01519
sanitise_SQ_lines
[function]
[call site]
01520
kh_get_refs
[function]
[call site]
01521
strcmp
[call site]
01522
__assert_fail
[call site]
01523
hts_log
[function]
[call site]
01524
refs_free
[function]
[call site]
01525
refs_create
[function]
[call site]
01526
refs_from_header
[function]
[call site]
01527
refs2id
[function]
[call site]
01528
calloc
[call site]
01529
kh_get_refs
[function]
[call site]
01530
hts_log
[function]
[call site]
01531
__isoc99_sscanf
[call site]
01532
hts_log
[function]
[call site]
01533
hts_log
[function]
[call site]
01534
__errno_location
[call site]
01535
cram_init_tables
[function]
[call site]
01536
hts_tpool_init
[function]
[call site]
01537
hts_malloc_p
[function]
[call site]
01538
hts_malloc_p
[function]
[call site]
01539
pthread_mutexattr_init
[call site]
01540
pthread_mutexattr_settype
[call site]
01541
pthread_mutex_init
[call site]
01542
pthread_mutexattr_destroy
[call site]
01543
pthread_mutex_lock
[call site]
01544
pthread_attr_init
[call site]
01545
pthread_attr_getstacksize
[call site]
01546
pthread_attr_setstacksize
[call site]
01547
pthread_cond_init
[call site]
01548
pthread_create
[call site]
01549
tpool_worker
[function]
[call site]
01550
pthread_mutex_lock
[call site]
01551
__assert_fail
[call site]
01552
pthread_cond_wait
[call site]
01553
__assert_fail
[call site]
01554
pthread_cond_broadcast
[call site]
01555
pthread_cond_signal
[call site]
01556
pthread_mutex_unlock
[call site]
01557
hts_tpool_add_result
[function]
[call site]
01558
pthread_mutex_lock
[call site]
01559
pthread_cond_signal
[call site]
01560
pthread_mutex_unlock
[call site]
01561
pthread_mutex_unlock
[call site]
01562
hts_tpool_process_shutdown
[function]
[call site]
01563
pthread_mutex_lock
[call site]
01564
hts_tpool_process_shutdown_locked
[function]
[call site]
01565
pthread_mutex_unlock
[call site]
01566
__assert_fail
[call site]
01567
pthread_cond_broadcast
[call site]
01568
pthread_mutex_unlock
[call site]
01569
pthread_mutex_lock
[call site]
01570
hts_tpool_process_destroy
[function]
[call site]
01571
pthread_mutex_unlock
[call site]
01572
pthread_mutex_lock
[call site]
01573
hts_tpool_process_shutdown_locked
[function]
[call site]
01574
pthread_mutex_unlock
[call site]
01575
pthread_mutex_unlock
[call site]
01576
pthread_attr_destroy
[call site]
01577
__errno_location
[call site]
01578
__errno_location
[call site]
01579
strerror
[call site]
01580
pthread_mutex_unlock
[call site]
01581
pthread_join
[call site]
01582
pthread_cond_destroy
[call site]
01583
pthread_mutex_destroy
[call site]
01584
pthread_attr_destroy
[call site]
01585
__errno_location
[call site]
01586
hts_tpool_process_init
[function]
[call site]
01587
pthread_cond_init
[call site]
01588
pthread_cond_init
[call site]
01589
pthread_cond_init
[call site]
01590
pthread_cond_init
[call site]
01591
hts_tpool_process_attach
[function]
[call site]
01592
pthread_mutex_lock
[call site]
01593
__assert_fail
[call site]
01594
pthread_mutex_unlock
[call site]
01595
hts_tpool_size
[function]
[call site]
01596
hts_tpool_process_init
[function]
[call site]
01597
hts_log
[function]
[call site]
01598
__errno_location
[call site]
01599
bgzf_hopen
[function]
[call site]
01600
__errno_location
[call site]
01601
hts_process_opts
[function]
[call site]
01602
hts_parse_opt_list
[function]
[call site]
01603
strncpy
[call site]
01604
hts_opt_add
[function]
[call site]
01605
strdup
[call site]
01606
strchr
[call site]
01607
strcmp
[call site]
01608
strcmp
[call site]
01609
atoi
[call site]
01610
strcmp
[call site]
01611
strcmp
[call site]
01612
atoi
[call site]
01613
strcmp
[call site]
01614
strcmp
[call site]
01615
atoi
[call site]
01616
strcmp
[call site]
01617
strcmp
[call site]
01618
atoi
[call site]
01619
strcmp
[call site]
01620
strcmp
[call site]
01621
atoi
[call site]
01622
strcmp
[call site]
01623
strcmp
[call site]
01624
atoi
[call site]
01625
strcmp
[call site]
01626
strcmp
[call site]
01627
atoi
[call site]
01628
strcmp
[call site]
01629
strcmp
[call site]
01630
atoi
[call site]
01631
strcmp
[call site]
01632
strcmp
[call site]
01633
atoi
[call site]
01634
strcmp
[call site]
01635
strcmp
[call site]
01636
atoi
[call site]
01637
strcmp
[call site]
01638
strcmp
[call site]
01639
atoi
[call site]
01640
strcmp
[call site]
01641
strcmp
[call site]
01642
atoi
[call site]
01643
strcmp
[call site]
01644
strcmp
[call site]
01645
atoi
[call site]
01646
strcmp
[call site]
01647
strcmp
[call site]
01648
atoi
[call site]
01649
strcmp
[call site]
01650
strcmp
[call site]
01651
atoi
[call site]
01652
strcmp
[call site]
01653
strcmp
[call site]
01654
strcmp
[call site]
01655
strcmp
[call site]
01656
strcmp
[call site]
01657
strcmp
[call site]
01658
strcmp
[call site]
01659
strcmp
[call site]
01660
strcmp
[call site]
01661
strcmp
[call site]
01662
strcmp
[call site]
01663
strcmp
[call site]
01664
strcmp
[call site]
01665
atoi
[call site]
01666
strcmp
[call site]
01667
strcmp
[call site]
01668
atoi
[call site]
01669
strcmp
[call site]
01670
strcmp
[call site]
01671
strtol
[call site]
01672
strcmp
[call site]
01673
strcmp
[call site]
01674
strtol
[call site]
01675
strcmp
[call site]
01676
strcmp
[call site]
01677
strtol
[call site]
01678
strcmp
[call site]
01679
strcmp
[call site]
01680
strcmp
[call site]
01681
strcmp
[call site]
01682
atoi
[call site]
01683
strcmp
[call site]
01684
strcmp
[call site]
01685
atoi
[call site]
01686
strcmp
[call site]
01687
strcmp
[call site]
01688
strtol
[call site]
01689
strcmp
[call site]
01690
strcmp
[call site]
01691
strtol
[call site]
01692
strcmp
[call site]
01693
strcmp
[call site]
01694
strcmp
[call site]
01695
strcmp
[call site]
01696
strcmp
[call site]
01697
strcmp
[call site]
01698
strcmp
[call site]
01699
strcmp
[call site]
01700
strcmp
[call site]
01701
strcmp
[call site]
01702
strcmp
[call site]
01703
strcmp
[call site]
01704
strcmp
[call site]
01705
strcmp
[call site]
01706
strcmp
[call site]
01707
strcmp
[call site]
01708
strcmp
[call site]
01709
strcmp
[call site]
01710
atoi
[call site]
01711
hts_log
[function]
[call site]
01712
hts_opt_apply
[function]
[call site]
01713
strdup
[call site]
01714
hts_set_opt
[function]
[call site]
01715
hts_set_threads
[function]
[call site]
01716
sam_set_threads
[function]
[call site]
01717
hts_tpool_init
[function]
[call site]
01718
sam_set_thread_pool
[function]
[call site]
01719
sam_state_create
[function]
[call site]
01720
calloc
[call site]
01721
pthread_mutex_init
[call site]
01722
pthread_mutex_init
[call site]
01723
pthread_cond_init
[call site]
01724
hts_tpool_size
[function]
[call site]
01725
hts_tpool_process_init
[function]
[call site]
01726
sam_state_destroy
[function]
[call site]
01727
pthread_mutex_lock
[call site]
01728
pthread_cond_signal
[call site]
01729
hts_tpool_wake_dispatch
[function]
[call site]
01730
hts_tpool_wake_dispatch
[function]
[call site]
01731
pthread_mutex_unlock
[call site]
01732
hts_usleep
[function]
[call site]
01733
pthread_mutex_lock
[call site]
01734
pthread_mutex_unlock
[call site]
01735
hts_tpool_dispatch
[function]
[call site]
01736
hts_tpool_dispatch3
[function]
[call site]
01737
sam_format_worker
[function]
[call site]
01738
pthread_mutex_lock
[call site]
01739
pthread_mutex_unlock
[call site]
01740
calloc
[call site]
01741
sam_state_err
[function]
[call site]
01742
pthread_mutex_lock
[call site]
01743
pthread_mutex_unlock
[call site]
01744
sam_format1_append
[function]
[call site]
01745
kputsn_
[function]
[call site]
01746
__errno_location
[call site]
01747
ks_resize
[function]
[call site]
01748
kputc_
[function]
[call site]
01749
kputw
[function]
[call site]
01750
ks_resize
[function]
[call site]
01751
kputuw
[function]
[call site]
01752
ks_resize
[function]
[call site]
01753
ks_resize
[function]
[call site]
01754
kputc_
[function]
[call site]
01755
kputs
[function]
[call site]
01756
kputc_
[function]
[call site]
01757
kputsn_
[function]
[call site]
01758
kputll
[function]
[call site]
01759
ks_resize
[function]
[call site]
01760
kputuw
[function]
[call site]
01761
kputc_
[function]
[call site]
01762
kputw
[function]
[call site]
01763
kputc_
[function]
[call site]
01764
kputw
[function]
[call site]
01765
kputc_
[function]
[call site]
01766
kputc_
[function]
[call site]
01767
kputc_
[function]
[call site]
01768
kputsn_
[function]
[call site]
01769
kputsn_
[function]
[call site]
01770
kputs
[function]
[call site]
01771
kputc_
[function]
[call site]
01772
kputll
[function]
[call site]
01773
kputc_
[function]
[call site]
01774
kputll
[function]
[call site]
01775
kputc_
[function]
[call site]
01776
ks_resize
[function]
[call site]
01777
nibble2base
[function]
[call site]
01778
add33
[function]
[call site]
01779
kputsn_
[function]
[call site]
01780
kputc_
[function]
[call site]
01781
sam_format_aux1
[function]
[call site]
01782
kputsn_
[function]
[call site]
01783
kputc_
[function]
[call site]
01784
kputsn_
[function]
[call site]
01785
kputw
[function]
[call site]
01786
kputsn_
[function]
[call site]
01787
kputw
[function]
[call site]
01788
kputsn_
[function]
[call site]
01789
le_to_u16
[function]
[call site]
01790
kputuw
[function]
[call site]
01791
kputsn_
[function]
[call site]
01792
le_to_i16
[function]
[call site]
01793
le_to_u16
[function]
[call site]
01794
kputw
[function]
[call site]
01795
kputsn_
[function]
[call site]
01796
le_to_u32
[function]
[call site]
01797
kputuw
[function]
[call site]
01798
kputsn_
[function]
[call site]
01799
le_to_i32
[function]
[call site]
01800
le_to_u32
[function]
[call site]
01801
kputw
[function]
[call site]
01802
kputsn_
[function]
[call site]
01803
kputc
[function]
[call site]
01804
le_to_float
[function]
[call site]
01805
le_to_u32
[function]
[call site]
01806
ksprintf
[function]
[call site]
01807
le_to_double
[function]
[call site]
01808
le_to_u64
[function]
[call site]
01809
ksprintf
[function]
[call site]
01810
kputc_
[function]
[call site]
01811
kputc_
[function]
[call site]
01812
kputc_
[function]
[call site]
01813
kputsn
[function]
[call site]
01814
le_to_u32
[function]
[call site]
01815
kputsn_
[function]
[call site]
01816
kputc
[function]
[call site]
01817
ks_expand
[function]
[call site]
01818
__errno_location
[call site]
01819
ks_resize
[function]
[call site]
01820
kputw
[function]
[call site]
01821
ks_expand
[function]
[call site]
01822
kputuw
[function]
[call site]
01823
ks_expand
[function]
[call site]
01824
le_to_i16
[function]
[call site]
01825
kputw
[function]
[call site]
01826
ks_expand
[function]
[call site]
01827
le_to_u16
[function]
[call site]
01828
kputuw
[function]
[call site]
01829
ks_expand
[function]
[call site]
01830
le_to_i32
[function]
[call site]
01831
kputw
[function]
[call site]
01832
ks_expand
[function]
[call site]
01833
le_to_u32
[function]
[call site]
01834
kputuw
[function]
[call site]
01835
ks_expand
[function]
[call site]
01836
le_to_float
[function]
[call site]
01837
kputd
[function]
[call site]
01838
__errno_location
[call site]
01839
hts_log
[function]
[call site]
01840
__errno_location
[call site]
01841
kputsn
[function]
[call site]
01842
hts_log
[function]
[call site]
01843
__errno_location
[call site]
01844
hts_log
[function]
[call site]
01845
__errno_location
[call site]
01846
__errno_location
[call site]
01847
sam_state_err
[function]
[call site]
01848
kputc
[function]
[call site]
01849
pthread_mutex_lock
[call site]
01850
pthread_mutex_unlock
[call site]
01851
hts_tpool_process_flush
[function]
[call site]
01852
pthread_mutex_lock
[call site]
01853
pthread_mutex_unlock
[call site]
01854
hts_tpool_process_empty
[function]
[call site]
01855
hts_usleep
[function]
[call site]
01856
pthread_mutex_lock
[call site]
01857
hts_tpool_process_is_shutdown
[function]
[call site]
01858
pthread_mutex_unlock
[call site]
01859
hts_tpool_process_shutdown
[function]
[call site]
01860
pthread_join
[call site]
01861
hts_tpool_process_destroy
[function]
[call site]
01862
hts_tpool_destroy
[function]
[call site]
01863
pthread_mutex_destroy
[call site]
01864
pthread_mutex_destroy
[call site]
01865
pthread_cond_destroy
[call site]
01866
sam_free_sp_bams
[function]
[call site]
01867
sam_free_sp_bams
[function]
[call site]
01868
bam_hdr_destroy
[function]
[call site]
01869
sam_hdr_destroy
[function]
[call site]
01870
bgzf_thread_pool
[function]
[call site]
01871
calloc
[call site]
01872
hts_tpool_size
[function]
[call site]
01873
hts_tpool_process_init
[function]
[call site]
01874
hts_tpool_process_ref_incr
[function]
[call site]
01875
pthread_mutex_lock
[call site]
01876
pthread_mutex_unlock
[call site]
01877
pool_create
[function]
[call site]
01878
pthread_mutex_init
[call site]
01879
pthread_mutex_init
[call site]
01880
pthread_mutex_init
[call site]
01881
pthread_cond_init
[call site]
01882
pthread_create
[call site]
01883
hts_tpool_destroy
[function]
[call site]
01884
hts_get_bgzfp
[function]
[call site]
01885
bgzf_mt
[function]
[call site]
01886
hts_tpool_init
[function]
[call site]
01887
bgzf_thread_pool
[function]
[call site]
01888
hts_tpool_destroy
[function]
[call site]
01889
hts_set_opt
[function]
[call site]
01890
hts_hfile
[function]
[call site]
01891
bgzf_hfile
[function]
[call site]
01892
cram_hfile
[function]
[call site]
01893
bgzf_hfile
[function]
[call site]
01894
hfile_set_blksize
[function]
[call site]
01895
hts_log
[function]
[call site]
01896
hts_log
[function]
[call site]
01897
hts_set_thread_pool
[function]
[call site]
01898
sam_set_thread_pool
[function]
[call site]
01899
hts_get_bgzfp
[function]
[call site]
01900
bgzf_thread_pool
[function]
[call site]
01901
hts_set_opt
[function]
[call site]
01902
hts_set_cache_size
[function]
[call site]
01903
hts_get_bgzfp
[function]
[call site]
01904
bgzf_set_cache_size
[function]
[call site]
01905
fastq_state_set
[function]
[call site]
01906
fastq_state_init
[function]
[call site]
01907
strcmp
[call site]
01911
kh_init_tag
[function]
[call site]
01912
calloc
[call site]
01913
strlen
[call site]
01914
hts_log
[function]
[call site]
01915
kh_put_tag
[function]
[call site]
01916
kh_resize_tag
[function]
[call site]
01917
__errno_location
[call site]
01918
realloc
[call site]
01919
strncpy
[call site]
01920
strcmp
[call site]
01921
isalpha_c
[function]
[call site]
01922
isalnum_c
[function]
[call site]
01923
strncpy
[call site]
01924
hts_log
[function]
[call site]
01925
regfree
[call site]
01926
regcomp
[call site]
01927
hts_log
[function]
[call site]
01928
fastq_state_set
[function]
[call site]
01929
fastq_state_set
[function]
[call site]
01930
cram_set_option
[function]
[call site]
01931
hts_set_filter_expression
[function]
[call site]
01932
hts_filter_free
[function]
[call site]
01933
regfree
[call site]
01934
hts_filter_init
[function]
[call site]
01935
calloc
[call site]
01936
strlen
[call site]
01937
hts_malloc_ps
[function]
[call site]
01938
hts_add_sat2
[function]
[call site]
01939
hts_prod_sat2
[function]
[call site]
01940
hts_malloc
[function]
[call site]
01941
cram_set_voption
[function]
[call site]
01942
hts_set_opt
[function]
[call site]
01943
hts_opt_free
[function]
[call site]
01944
hts_opt_free
[function]
[call site]
01945
hclose_abruptly
[function]
[call site]
01946
hts_log
[function]
[call site]
01947
hclose_abruptly
[function]
[call site]
01948
hclose
[function]
[call site]
01949
abort
[call site]
01950
hts_close
[function]
[call site]
01951
__errno_location
[call site]
01952
bgzf_close
[function]
[call site]
01953
cram_eof
[function]
[call site]
01954
hts_log
[function]
[call site]
01955
cram_close
[function]
[call site]
01956
cram_update_curr_slice
[function]
[call site]
01957
cram_flush_container_mt
[function]
[call site]
01958
pthread_mutex_lock
[call site]
01959
reset_metrics
[function]
[call site]
01960
pthread_mutex_unlock
[call site]
01961
hts_tpool_process_flush
[function]
[call site]
01962
pthread_mutex_lock
[call site]
01963
pthread_mutex_unlock
[call site]
01964
cram_flush_container
[function]
[call site]
01965
cram_encode_container
[function]
[call site]
01966
pthread_mutex_lock
[call site]
01967
hts_log
[function]
[call site]
01968
hts_log
[function]
[call site]
01969
pthread_mutex_lock
[call site]
01970
pthread_mutex_unlock
[call site]
01971
cram_get_ref
[function]
[call site]
01972
pthread_mutex_lock
[call site]
01973
hts_log
[function]
[call site]
01974
pthread_mutex_unlock
[call site]
01975
pthread_mutex_lock
[call site]
01976
hts_log
[function]
[call site]
01977
cram_populate_ref
[function]
[call site]
01978
getenv
[call site]
01979
getenv
[call site]
01980
hts_log
[function]
[call site]
01981
sam_hrecs_find_type_id
[function]
[call site]
01982
sam_hrecs_find_key
[function]
[call site]
01983
hts_log
[function]
[call site]
01984
expand_cache_path
[function]
[call site]
01985
strchr
[call site]
01986
strncpy
[call site]
01987
strlen
[call site]
01988
strcpy
[call site]
01989
strtol
[call site]
01990
strlen
[call site]
01991
strncpy
[call site]
01992
strlen
[call site]
01993
strcpy
[call site]
01994
strlen
[call site]
01995
strcpy
[call site]
01996
stat
[call site]
01997
stat
[call site]
01998
bgzf_open
[function]
[call site]
01999
string_dup
[function]
[call site]
02000
bgzf_close
[function]
[call site]
02001
open_path_mfile
[function]
[call site]
02002
getenv
[call site]
02003
tokenise_search_path
[function]
[call site]
02004
strlen
[call site]
02005
strncmp
[call site]
02006
strncmp
[call site]
02007
strncmp
[call site]
02008
strncmp
[call site]
02009
strncmp
[call site]
02010
strncmp
[call site]
02011
strncmp
[call site]
02012
strncmp
[call site]
02013
strncmp
[call site]
02014
strncmp
[call site]
02015
find_file_url
[function]
[call site]
02016
expand_path
[function]
[call site]
02017
strlen
[call site]
02018
strlen
[call site]
02019
hts_log
[function]
[call site]
02020
strchr
[call site]
02021
strtol
[call site]
02022
hopen
[function]
[call site]
02023
__errno_location
[call site]
02024
__errno_location
[call site]
02025
strerror
[call site]
02026
hts_log
[function]
[call site]
02027
mfcreate
[function]
[call site]
02028
hread
[function]
[call site]
02029
mfwrite
[function]
[call site]
02030
realloc
[call site]
02031
hclose_abruptly
[function]
[call site]
02032
hclose
[function]
[call site]
02033
__errno_location
[call site]
02034
strerror
[call site]
02035
hts_log
[function]
[call site]
02036
mrewind
[function]
[call site]
02037
mfdestroy
[function]
[call site]
02038
strncmp
[call site]
02039
hisremote
[function]
[call site]
02040
find_file_url
[function]
[call site]
02041
find_file_dir
[function]
[call site]
02042
expand_path
[function]
[call site]
02043
is_file
[function]
[call site]
02044
stat
[call site]
02045
mfopen
[function]
[call site]
02046
fopen
[call site]
02047
mfreopen
[function]
[call site]
02048
strchr
[call site]
02049
strchr
[call site]
02050
strchr
[call site]
02051
strchr
[call site]
02052
strchr
[call site]
02053
strchr
[call site]
02054
strchr
[call site]
02055
mfcreate
[function]
[call site]
02056
mfmmap
[function]
[call site]
02057
mfload
[function]
[call site]
02061
stat
[call site]
02062
realloc
[call site]
02063
fread
[call site]
02064
feof
[call site]
02065
fseek
[call site]
02066
mfcreate
[function]
[call site]
02067
hts_log
[function]
[call site]
02068
fseek
[call site]
02069
strlen
[call site]
02070
strcpy
[call site]
02071
strrchr
[call site]
02072
find_file_dir
[function]
[call site]
02073
mfsteal
[function]
[call site]
02074
mfdetach
[function]
[call site]
02075
mfflush
[function]
[call site]
02076
fclose
[call site]
02077
mfdestroy
[function]
[call site]
02078
sam_hrecs_find_key
[function]
[call site]
02079
strstr
[call site]
02080
strncmp
[call site]
02081
hts_log
[function]
[call site]
02082
strncmp
[call site]
02083
bgzf_close
[function]
[call site]
02084
refs_load_fai
[function]
[call site]
02085
sanitise_SQ_lines
[function]
[call site]
02086
bgzf_close
[function]
[call site]
02087
refs2id
[function]
[call site]
02088
expand_cache_path
[function]
[call site]
02089
hts_log
[function]
[call site]
02090
mkdir_prefix
[function]
[call site]
02091
strrchr
[call site]
02092
is_directory
[function]
[call site]
02093
stat
[call site]
02094
mkdir
[call site]
02095
chmod
[call site]
02096
mkdir_prefix
[function]
[call site]
02097
mkdir
[call site]
02098
chmod
[call site]
02099
hts_open_tmpfile
[function]
[call site]
02100
getpid
[call site]
02101
time
[call site]
02102
clock
[call site]
02103
ks_clear
[function]
[call site]
02104
ksprintf
[function]
[call site]
02105
hopen
[function]
[call site]
02106
__errno_location
[call site]
02107
perror
[call site]
02108
hts_md5_init
[function]
[call site]
02109
hts_md5_reset
[function]
[call site]
02110
hclose_abruptly
[function]
[call site]
02111
unlink
[call site]
02112
hts_md5_update
[function]
[call site]
02113
body
[function]
[call site]
02114
body
[function]
[call site]
02115
hts_md5_final
[function]
[call site]
02116
body
[function]
[call site]
02117
body
[function]
[call site]
02118
hts_md5_destroy
[function]
[call site]
02119
hts_md5_hex
[function]
[call site]
02120
strncmp
[call site]
02121
hts_log
[function]
[call site]
02122
hclose_abruptly
[function]
[call site]
02123
unlink
[call site]
02124
hwrite
[function]
[call site]
02125
hclose
[function]
[call site]
02126
chmod
[call site]
02127
rename
[call site]
02128
__errno_location
[call site]
02129
strerror
[call site]
02130
hts_log
[function]
[call site]
02131
unlink
[call site]
02132
hts_log
[function]
[call site]
02133
hts_log
[function]
[call site]
02134
pthread_mutex_unlock
[call site]
02135
pthread_mutex_unlock
[call site]
02136
cram_ref_incr_locked
[function]
[call site]
02137
cram_ref_incr_locked
[function]
[call site]
02138
cram_ref_load
[function]
[call site]
02139
__assert_fail
[call site]
02140
__assert_fail
[call site]
02141
ref_entry_free_seq
[function]
[call site]
02142
strcmp
[call site]
02143
bgzf_close
[function]
[call site]
02144
bgzf_open_ref
[function]
[call site]
02145
load_ref_portion
[function]
[call site]
02146
bgzf_useek
[function]
[call site]
02147
hseek
[function]
[call site]
02148
bgzf_read_block
[function]
[call site]
02149
bgzf_seek_common
[function]
[call site]
02150
pthread_mutex_lock
[call site]
02151
pthread_cond_signal
[call site]
02152
hts_tpool_wake_dispatch
[function]
[call site]
02153
pthread_cond_wait
[call site]
02154
pthread_cond_signal
[call site]
02155
abort
[call site]
02156
__errno_location
[call site]
02157
pthread_mutex_unlock
[call site]
02158
pthread_mutex_unlock
[call site]
02159
hseek
[function]
[call site]
02160
bgzf_read_block
[function]
[call site]
02161
__assert_fail
[call site]
02162
perror
[call site]
02163
bgzf_read
[function]
[call site]
02164
__assert_fail
[call site]
02165
bgzf_read_block
[function]
[call site]
02166
hts_log
[function]
[call site]
02167
bgzf_htell
[function]
[call site]
02168
hts_log
[function]
[call site]
02169
bgzf_htell
[function]
[call site]
02170
perror
[call site]
02171
isspace_c
[function]
[call site]
02172
isspace_c
[function]
[call site]
02173
isspace_c
[function]
[call site]
02174
hts_log
[function]
[call site]
02175
toupper_c
[function]
[call site]
02176
toupper
[call site]
02177
pthread_mutex_unlock
[call site]
02178
pthread_mutex_unlock
[call site]
02179
cram_ref_incr_locked
[function]
[call site]
02180
pthread_mutex_unlock
[call site]
02181
pthread_mutex_unlock
[call site]
02182
pthread_mutex_unlock
[call site]
02183
pthread_mutex_unlock
[call site]
02184
strcmp
[call site]
02185
bgzf_close
[function]
[call site]
02186
bgzf_open_ref
[function]
[call site]
02187
pthread_mutex_unlock
[call site]
02188
pthread_mutex_unlock
[call site]
02189
load_ref_portion
[function]
[call site]
02190
pthread_mutex_unlock
[call site]
02191
pthread_mutex_unlock
[call site]
02192
pthread_mutex_unlock
[call site]
02193
pthread_mutex_unlock
[call site]
02194
hts_log
[function]
[call site]
02195
hts_log
[function]
[call site]
02196
pthread_mutex_lock
[call site]
02197
pthread_mutex_unlock
[call site]
02198
hts_log
[function]
[call site]
02199
hts_log
[function]
[call site]
02200
hts_log
[function]
[call site]
02201
hts_log
[function]
[call site]
02202
pthread_mutex_lock
[call site]
02203
pthread_mutex_unlock
[call site]
02204
validate_md5
[function]
[call site]
02205
sam_hrecs_find_type_id
[function]
[call site]
02206
sam_hrecs_find_key
[function]
[call site]
02207
hts_md5_init
[function]
[call site]
02208
hts_md5_update
[function]
[call site]
02209
hts_md5_final
[function]
[call site]
02210
hts_md5_destroy
[function]
[call site]
02211
hts_md5_hex
[function]
[call site]
02212
strcmp
[call site]
02213
hts_log
[function]
[call site]
02214
hts_log
[function]
[call site]
02215
cram_ref_incr
[function]
[call site]
02216
pthread_mutex_lock
[call site]
02217
cram_ref_incr_locked
[function]
[call site]
02218
pthread_mutex_unlock
[call site]
02219
cram_get_ref
[function]
[call site]
02220
validate_md5
[function]
[call site]
02221
hts_log
[function]
[call site]
02222
__assert_fail
[call site]
02223
lossy_read_names
[function]
[call site]
02224
kh_init_m_s2u64
[function]
[call site]
02225
calloc
[call site]
02226
expected_template_count
[function]
[call site]
02227
bam_aux_get
[function]
[call site]
02228
bam_aux_first
[function]
[call site]
02229
__errno_location
[call site]
02230
skip_aux
[function]
[call site]
02231
aux_type2size
[function]
[call site]
02232
memchr
[call site]
02233
aux_type2size
[function]
[call site]
02234
le_to_u32
[function]
[call site]
02235
bam_aux_next
[function]
[call site]
02236
skip_aux
[function]
[call site]
02237
__errno_location
[call site]
02238
hts_log
[function]
[call site]
02239
__errno_location
[call site]
02240
hts_log
[function]
[call site]
02241
__errno_location
[call site]
02242
bam_data_end
[function]
[call site]
02243
bam_aux2i_end
[function]
[call site]
02244
__errno_location
[call site]
02245
__errno_location
[call site]
02246
__errno_location
[call site]
02247
le_to_i16
[function]
[call site]
02248
le_to_u16
[function]
[call site]
02249
__errno_location
[call site]
02250
le_to_u16
[function]
[call site]
02251
__errno_location
[call site]
02252
le_to_i32
[function]
[call site]
02253
le_to_u32
[function]
[call site]
02254
__errno_location
[call site]
02255
le_to_u32
[function]
[call site]
02256
__errno_location
[call site]
02257
bam_aux_get
[function]
[call site]
02258
kh_put_m_s2u64
[function]
[call site]
02259
kh_resize_m_s2u64
[function]
[call site]
02260
__errno_location
[call site]
02261
realloc
[call site]
02262
__ac_FNV1a_hash_string
[function]
[call site]
02263
strcmp
[call site]
02264
kh_get_m_s2u64
[function]
[call site]
02265
kh_destroy_m_s2u64
[function]
[call site]
02266
cram_generate_reference
[function]
[call site]
02267
extend_ref
[function]
[call site]
02268
realloc
[call site]
02269
hts_realloc_p
[function]
[call site]
02270
hts_log
[function]
[call site]
02271
cram_add_to_ref
[function]
[call site]
02272
bam_aux_get
[function]
[call site]
02273
cram_add_to_ref_MD
[function]
[call site]
02274
bam_cigar2rlen
[function]
[call site]
02275
extend_ref
[function]
[call site]
02276
__ctype_b_loc
[call site]
02277
hts_str2uint
[function]
[call site]
02278
extend_ref
[function]
[call site]
02279
next_cigar_op
[function]
[call site]
02280
hts_log
[function]
[call site]
02281
__ctype_b_loc
[call site]
02282
extend_ref
[function]
[call site]
02283
next_cigar_op
[function]
[call site]
02284
hts_log
[function]
[call site]
02285
extend_ref
[function]
[call site]
02286
next_cigar_op
[function]
[call site]
02287
hts_log
[function]
[call site]
02288
extend_ref
[function]
[call site]
02289
extend_ref
[function]
[call site]
02290
hts_log
[function]
[call site]
02291
hts_log
[function]
[call site]
02292
pthread_mutex_lock
[call site]
02293
pthread_mutex_unlock
[call site]
02294
pthread_mutex_lock
[call site]
02295
pthread_mutex_unlock
[call site]
02296
cram_ref_decr
[function]
[call site]
02297
pthread_mutex_lock
[call site]
02298
cram_ref_decr_locked
[function]
[call site]
02299
__assert_fail
[call site]
02300
ref_entry_free_seq
[function]
[call site]
02301
pthread_mutex_unlock
[call site]
02302
cram_get_ref
[function]
[call site]
02303
hts_log
[function]
[call site]
02304
validate_md5
[function]
[call site]
02305
process_one_read
[function]
[call site]
02306
bam_aux_get
[function]
[call site]
02307
bam_aux_get
[function]
[call site]
02308
cram_stats_add
[function]
[call site]
02309
kh_init_m_i2i
[function]
[call site]
02310
kh_put_m_i2i
[function]
[call site]
02311
kh_resize_m_i2i
[function]
[call site]
02312
cram_stats_add
[function]
[call site]
02313
cram_stats_add
[function]
[call site]
02314
block_grow
[function]
[call site]
02315
block_resize
[function]
[call site]
02316
block_resize_exact
[function]
[call site]
02317
realloc
[call site]
02318
block_grow
[function]
[call site]
02319
nibble2base
[function]
[call site]
02320
hts_log
[function]
[call site]
02321
hts_realloc_p
[function]
[call site]
02322
hts_log
[function]
[call site]
02323
kputuw
[function]
[call site]
02324
ks_resize
[function]
[call site]
02325
ks_resize
[function]
[call site]
02326
kputc
[function]
[call site]
02327
ks_resize
[function]
[call site]
02328
cram_add_substitution
[function]
[call site]
02329
cram_stats_add
[function]
[call site]
02330
cram_stats_add
[function]
[call site]
02331
cram_stats_add
[function]
[call site]
02332
block_append_char
[function]
[call site]
02333
block_grow
[function]
[call site]
02334
cram_add_feature
[function]
[call site]
02335
hts_realloc_p
[function]
[call site]
02336
cram_stats_add
[function]
[call site]
02337
cram_stats_add
[function]
[call site]
02338
cram_stats_add
[function]
[call site]
02339
cram_add_bases
[function]
[call site]
02340
cram_add_feature
[function]
[call site]
02341
cram_add_base
[function]
[call site]
02342
cram_stats_add
[function]
[call site]
02343
cram_stats_add
[function]
[call site]
02344
block_append_char
[function]
[call site]
02345
cram_add_feature
[function]
[call site]
02346
cram_add_base
[function]
[call site]
02347
kputuw
[function]
[call site]
02348
kputc_
[function]
[call site]
02349
ks_resize
[function]
[call site]
02350
kputsn
[function]
[call site]
02351
ks_resize
[function]
[call site]
02352
cram_add_deletion
[function]
[call site]
02353
cram_stats_add
[function]
[call site]
02354
cram_add_feature
[function]
[call site]
02355
cram_add_skip
[function]
[call site]
02356
cram_stats_add
[function]
[call site]
02357
cram_add_feature
[function]
[call site]
02358
cram_add_insertion
[function]
[call site]
02359
cram_stats_add
[function]
[call site]
02360
block_append
[function]
[call site]
02361
block_grow
[function]
[call site]
02362
block_append_char
[function]
[call site]
02363
block_append_char
[function]
[call site]
02364
cram_add_feature
[function]
[call site]
02365
cram_add_quality
[function]
[call site]
02366
cram_stats_add
[function]
[call site]
02367
block_append_char
[function]
[call site]
02368
cram_add_feature
[function]
[call site]
02369
cram_add_softclip
[function]
[call site]
02370
block_append
[function]
[call site]
02371
block_append_char
[function]
[call site]
02372
block_append
[function]
[call site]
02373
block_append_char
[function]
[call site]
02374
block_append_char
[function]
[call site]
02375
cram_add_feature
[function]
[call site]
02376
cram_add_quality
[function]
[call site]
02377
cram_add_quality
[function]
[call site]
02378
cram_add_hardclip
[function]
[call site]
02379
cram_stats_add
[function]
[call site]
02380
cram_add_feature
[function]
[call site]
02381
cram_add_pad
[function]
[call site]
02382
cram_stats_add
[function]
[call site]
02383
cram_add_feature
[function]
[call site]
02384
hts_log
[function]
[call site]
02385
hts_log
[function]
[call site]
02386
cram_stats_add
[function]
[call site]
02387
kputuw
[function]
[call site]
02388
cram_stats_add
[function]
[call site]
02389
cram_encode_aux
[function]
[call site]
02390
bam_data_end
[function]
[call site]
02391
hts_malloc_ps
[function]
[call site]
02392
hts_add_sat2
[function]
[call site]
02393
hts_prod_sat2
[function]
[call site]
02394
hts_malloc
[function]
[call site]
02395
hts_log
[function]
[call site]
02396
sam_hrecs_find_rg
[function]
[call site]
02397
kh_get_m_s2i
[function]
[call site]
02398
hts_log
[function]
[call site]
02399
strncasecmp
[call site]
02400
hts_log
[function]
[call site]
02401
bam_aux2i_end
[function]
[call site]
02402
hts_log
[function]
[call site]
02403
block_append
[function]
[call site]
02404
kh_put_m_tagmap
[function]
[call site]
02405
kh_resize_m_tagmap
[function]
[call site]
02406
realloc
[call site]
02407
pthread_mutex_lock
[call site]
02408
kh_put_m_metrics
[function]
[call site]
02409
kh_resize_m_metrics
[function]
[call site]
02410
realloc
[call site]
02411
pthread_mutex_unlock
[call site]
02412
cram_new_metrics
[function]
[call site]
02413
kh_del_m_metrics
[function]
[call site]
02414
pthread_mutex_unlock
[call site]
02415
pthread_mutex_unlock
[call site]
02416
calloc
[call site]
02417
cram_encoder_init
[function]
[call site]
02418
cram_encoding2str
[function]
[call site]
02419
hts_log
[function]
[call site]
02420
cram_encoding2str
[function]
[call site]
02421
hts_log
[function]
[call site]
02422
abort
[call site]
02423
cram_stats_add
[function]
[call site]
02424
cram_stats_encoding
[function]
[call site]
02425
hts_realloc_p
[function]
[call site]
02426
hts_realloc_p
[function]
[call site]
02427
hts_realloc_p
[function]
[call site]
02428
hts_realloc_p
[function]
[call site]
02429
__assert_fail
[call site]
02430
cram_encoder_init
[function]
[call site]
02431
cram_stats_add
[function]
[call site]
02432
cram_stats_encoding
[function]
[call site]
02433
cram_encoder_init
[function]
[call site]
02434
cram_stats_add
[function]
[call site]
02435
cram_stats_encoding
[function]
[call site]
02436
cram_encoder_init
[function]
[call site]
02437
cram_encoder_init
[function]
[call site]
02438
hts_log
[function]
[call site]
02439
pthread_mutex_lock
[call site]
02440
pthread_mutex_unlock
[call site]
02441
cram_new_block
[function]
[call site]
02442
block_append_char
[function]
[call site]
02443
cram_new_block
[function]
[call site]
02444
block_append
[function]
[call site]
02445
cram_new_block
[function]
[call site]
02446
block_append
[function]
[call site]
02447
cram_new_block
[function]
[call site]
02448
block_append
[function]
[call site]
02449
cram_new_block
[function]
[call site]
02450
hts_log
[function]
[call site]
02451
cram_new_block
[function]
[call site]
02452
hts_log
[function]
[call site]
02453
hts_log
[function]
[call site]
02454
block_append_char
[function]
[call site]
02455
kh_put_m_s2i
[function]
[call site]
02456
kh_resize_m_s2i
[function]
[call site]
02457
__ac_FNV1a_hash_string
[function]
[call site]
02458
string_ndup
[function]
[call site]
02459
cram_stats_add
[function]
[call site]
02460
sam_hrecs_find_rg
[function]
[call site]
02461
cram_stats_add
[function]
[call site]
02462
block_grow
[function]
[call site]
02463
block_grow
[function]
[call site]
02464
cram_stats_add
[function]
[call site]
02465
kh_put_m_s2i
[function]
[call site]
02466
string_ndup
[function]
[call site]
02467
cram_stats_add
[function]
[call site]
02468
cram_stats_add
[function]
[call site]
02469
cram_stats_del
[function]
[call site]
02470
__assert_fail
[call site]
02471
kh_get_m_i2i
[function]
[call site]
02472
kh_del_m_i2i
[function]
[call site]
02473
hts_log
[function]
[call site]
02474
cram_stats_del
[function]
[call site]
02475
cram_stats_del
[function]
[call site]
02476
cram_stats_del
[function]
[call site]
02477
cram_stats_add
[function]
[call site]
02478
cram_stats_del
[function]
[call site]
02479
cram_stats_add
[function]
[call site]
02480
cram_stats_add
[function]
[call site]
02481
cram_stats_add
[function]
[call site]
02482
cram_stats_add
[function]
[call site]
02483
cram_stats_add
[function]
[call site]
02484
cram_stats_add
[function]
[call site]
02485
cram_stats_add
[function]
[call site]
02486
cram_stats_add
[function]
[call site]
02487
add_read_names
[function]
[call site]
02488
block_append
[function]
[call site]
02489
cram_stats_add
[function]
[call site]
02490
hts_prod_sat2
[function]
[call site]
02491
hts_calloc
[function]
[call site]
02492
__assert_fail
[call site]
02493
cram_ref_decr
[function]
[call site]
02494
pthread_mutex_lock
[call site]
02495
pthread_mutex_unlock
[call site]
02496
cram_stats_encoding
[function]
[call site]
02497
pthread_mutex_lock
[call site]
02498
pthread_mutex_unlock
[call site]
02499
hts_log
[function]
[call site]
02500
hts_md5_init
[function]
[call site]
02501
hts_md5_update
[function]
[call site]
02502
hts_md5_final
[function]
[call site]
02503
hts_md5_destroy
[function]
[call site]
02504
cram_stats_encoding
[function]
[call site]
02505
cram_encoder_init
[function]
[call site]
02506
cram_stats_encoding
[function]
[call site]
02507
cram_encoder_init
[function]
[call site]
02508
cram_stats_encoding
[function]
[call site]
02509
cram_encoder_init
[function]
[call site]
02510
cram_encoder_init
[function]
[call site]
02511
cram_encoder_init
[function]
[call site]
02512
cram_stats_encoding
[function]
[call site]
02513
cram_encoder_init
[function]
[call site]
02514
cram_stats_encoding
[function]
[call site]
02515
cram_encoder_init
[function]
[call site]
02516
cram_stats_encoding
[function]
[call site]
02517
cram_encoder_init
[function]
[call site]
02518
cram_stats_encoding
[function]
[call site]
02519
cram_encoder_init
[function]
[call site]
02520
cram_stats_encoding
[function]
[call site]
02521
cram_encoder_init
[function]
[call site]
02522
cram_stats_encoding
[function]
[call site]
02523
cram_encoder_init
[function]
[call site]
02524
cram_stats_encoding
[function]
[call site]
02525
cram_encoder_init
[function]
[call site]
02526
cram_stats_encoding
[function]
[call site]
02527
cram_encoder_init
[function]
[call site]
02528
cram_stats_encoding
[function]
[call site]
02529
cram_encoder_init
[function]
[call site]
02530
cram_stats_encoding
[function]
[call site]
02531
cram_encoder_init
[function]
[call site]
02532
cram_stats_encoding
[function]
[call site]
02533
cram_encoder_init
[function]
[call site]
02534
cram_stats_encoding
[function]
[call site]
02535
cram_encoder_init
[function]
[call site]
02536
cram_stats_encoding
[function]
[call site]
02537
cram_encoder_init
[function]
[call site]
02538
cram_encoder_init
[function]
[call site]
02539
cram_stats_encoding
[function]
[call site]
02540
cram_encoder_init
[function]
[call site]
02541
cram_stats_encoding
[function]
[call site]
02542
cram_encoder_init
[function]
[call site]
02543
cram_stats_encoding
[function]
[call site]
02544
cram_encoder_init
[function]
[call site]
02545
cram_stats_encoding
[function]
[call site]
02546
cram_encoder_init
[function]
[call site]
02547
cram_stats_encoding
[function]
[call site]
02548
cram_encoder_init
[function]
[call site]
02549
cram_stats_encoding
[function]
[call site]
02550
cram_encoder_init
[function]
[call site]
02551
cram_stats_encoding
[function]
[call site]
02552
cram_encoder_init
[function]
[call site]
02553
cram_stats_encoding
[function]
[call site]
02554
cram_encoder_init
[function]
[call site]
02555
cram_encoder_init
[function]
[call site]
02556
cram_encoder_init
[function]
[call site]
02557
cram_encoder_init
[function]
[call site]
02558
cram_encoder_init
[function]
[call site]
02559
hts_log
[function]
[call site]
02560
cram_encode_slice
[function]
[call site]
02561
hts_prod_sat2
[function]
[call site]
02562
hts_calloc_ps
[function]
[call site]
02563
hts_add_sat2
[function]
[call site]
02564
hts_calloc
[function]
[call site]
02565
hts_malloc_p
[function]
[call site]
02566
cram_new_block
[function]
[call site]
02567
cram_new_block
[function]
[call site]
02568
cram_new_block
[function]
[call site]
02569
block_append
[function]
[call site]
02570
cram_allocate_block
[function]
[call site]
02571
cram_new_block
[function]
[call site]
02572
cram_new_block
[function]
[call site]
02573
cram_allocate_block
[function]
[call site]
02574
cram_allocate_block
[function]
[call site]
02575
cram_encode_slice_read
[function]
[call site]
02576
hts_log
[function]
[call site]
02577
cram_free_block
[function]
[call site]
02578
cram_free_block
[function]
[call site]
02579
cram_free_block
[function]
[call site]
02580
cram_free_block
[function]
[call site]
02581
cram_compress_slice
[function]
[call site]
02582
cram_compress_block2
[function]
[call site]
02583
cram_compress_block3
[function]
[call site]
02584
pthread_mutex_lock
[call site]
02585
pthread_mutex_unlock
[call site]
02586
cram_compress_by_method
[function]
[call site]
02587
zlib_mem_deflate
[function]
[call site]
02588
deflateInit2_
[call site]
02589
hts_log
[function]
[call site]
02590
hts_log
[function]
[call site]
02591
deflate
[call site]
02592
hts_log
[function]
[call site]
02593
deflate
[call site]
02594
hts_log
[function]
[call site]
02595
deflateEnd
[call site]
02596
hts_log
[function]
[call site]
02597
BZ2_bzBuffToBuffCompress
[call site]
02598
fqz_compress
[function]
[call site]
02599
compress_block_fqz2f
[function]
[call site]
02600
fqz_pick_parameters
[function]
[call site]
02601
calloc
[call site]
02602
fqz_qual_stats
[function]
[call site]
02603
calloc
[call site]
02604
memcmp
[call site]
02605
fast_log
[function]
[call site]
02606
fast_log
[function]
[call site]
02607
fast_log
[function]
[call site]
02608
fast_log
[function]
[call site]
02609
fast_log
[function]
[call site]
02610
fast_log
[function]
[call site]
02611
fast_log
[function]
[call site]
02612
log
[call site]
02613
log
[call site]
02614
log
[call site]
02615
log
[call site]
02616
log
[call site]
02617
log
[call site]
02618
log
[call site]
02619
log
[call site]
02620
log
[call site]
02621
var_put_u32
[function]
[call site]
02622
var_put_u32_safe
[function]
[call site]
02623
fqz_store_parameters
[function]
[call site]
02624
store_array
[function]
[call site]
02625
fqz_store_parameters1
[function]
[call site]
02626
store_array
[function]
[call site]
02627
store_array
[function]
[call site]
02628
store_array
[function]
[call site]
02629
fqz_create_models
[function]
[call site]
02630
RC_SetOutput
[function]
[call site]
02631
RC_SetOutputEnd
[function]
[call site]
02632
RC_StartEncode
[function]
[call site]
02633
compress_new_read
[function]
[call site]
02634
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02635
RC_Encode
[function]
[call site]
02636
RC_ShiftLowCheck
[function]
[call site]
02637
SIMPLE_MODEL256_normalize
[function]
[call site]
02638
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02639
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02640
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02641
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02642
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02643
SIMPLE_MODEL2_normalize
[function]
[call site]
02644
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02645
memcmp
[call site]
02646
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02647
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02648
mm_prefetch
[function]
[call site]
02649
fqz_update_ctx
[function]
[call site]
02650
mm_prefetch
[function]
[call site]
02651
fqz_update_ctx
[function]
[call site]
02652
mm_prefetch
[function]
[call site]
02653
fqz_update_ctx
[function]
[call site]
02654
mm_prefetch
[function]
[call site]
02655
fqz_update_ctx
[function]
[call site]
02656
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02657
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02658
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02659
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02660
mm_prefetch
[function]
[call site]
02661
fqz_update_ctx
[function]
[call site]
02662
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02663
RC_FinishEncode
[function]
[call site]
02664
RC_ShiftLowCheck
[function]
[call site]
02665
RC_OutSize
[function]
[call site]
02666
fqz_destroy_models
[function]
[call site]
02667
fqz_free_parameters
[function]
[call site]
02668
lzma_mem_deflate
[function]
[call site]
02669
lzma_stream_buffer_bound
[call site]
02670
lzma_easy_buffer_encode
[call site]
02671
rans_compress
[function]
[call site]
02672
rans_compress_O1
[function]
[call site]
02673
rans_compress_O0
[function]
[call site]
02674
hist8
[function]
[call site]
02675
htscodecs_tls_calloc
[function]
[call site]
02676
htscodecs_tls_free
[function]
[call site]
02677
__assert_fail
[call site]
02678
RansEncSymbolInit
[function]
[call site]
02679
__assert_fail
[call site]
02680
__assert_fail
[call site]
02681
RansEncInit
[function]
[call site]
02682
RansEncInit
[function]
[call site]
02683
RansEncInit
[function]
[call site]
02684
RansEncInit
[function]
[call site]
02685
RansEncPutSymbol
[function]
[call site]
02686
__assert_fail
[call site]
02687
RansEncPutSymbol
[function]
[call site]
02688
RansEncPutSymbol
[function]
[call site]
02689
RansEncPutSymbol
[function]
[call site]
02690
RansEncPutSymbol
[function]
[call site]
02691
RansEncPutSymbol
[function]
[call site]
02692
RansEncPutSymbol
[function]
[call site]
02693
RansEncFlush
[function]
[call site]
02694
RansEncFlush
[function]
[call site]
02695
RansEncFlush
[function]
[call site]
02696
RansEncFlush
[function]
[call site]
02697
htscodecs_tls_alloc
[function]
[call site]
02698
hist1_4
[function]
[call site]
02699
htscodecs_tls_calloc
[function]
[call site]
02700
htscodecs_tls_free
[function]
[call site]
02701
RansEncSymbolInit
[function]
[call site]
02702
__assert_fail
[call site]
02703
RansEncInit
[function]
[call site]
02704
RansEncInit
[function]
[call site]
02705
RansEncInit
[function]
[call site]
02706
RansEncInit
[function]
[call site]
02707
RansEncPutSymbol
[function]
[call site]
02708
RansEncPutSymbol4
[function]
[call site]
02709
__assert_fail
[call site]
02710
__assert_fail
[call site]
02711
__assert_fail
[call site]
02712
__assert_fail
[call site]
02713
RansEncPutSymbol
[function]
[call site]
02714
RansEncPutSymbol
[function]
[call site]
02715
RansEncPutSymbol
[function]
[call site]
02716
RansEncPutSymbol
[function]
[call site]
02717
RansEncFlush
[function]
[call site]
02718
RansEncFlush
[function]
[call site]
02719
RansEncFlush
[function]
[call site]
02720
RansEncFlush
[function]
[call site]
02721
htscodecs_tls_free
[function]
[call site]
02722
rans_compress_O0
[function]
[call site]
02723
rans_compress_4x16
[function]
[call site]
02724
rans_compress_to_4x16
[function]
[call site]
02725
rans_compress_bound_4x16
[function]
[call site]
02726
var_put_u32
[function]
[call site]
02727
rans_compress_to_4x16
[function]
[call site]
02728
realloc
[call site]
02729
var_put_u32
[function]
[call site]
02730
var_put_u32
[function]
[call site]
02731
var_put_u32
[function]
[call site]
02732
hts_pack
[function]
[call site]
02733
var_put_u32
[function]
[call site]
02734
hts_rle_encode
[function]
[call site]
02735
rle_find_syms
[function]
[call site]
02736
var_put_u32
[function]
[call site]
02737
var_put_u32
[function]
[call site]
02738
var_put_u32
[function]
[call site]
02739
rans_enc_func
[function]
[call site]
02740
pthread_once
[call site]
02741
htscodecs_tls_cpu_init
[function]
[call site]
02742
strerror
[call site]
02743
fprintf
[call site]
02744
fprintf
[call site]
02745
var_put_u32
[function]
[call site]
02746
var_put_u32
[function]
[call site]
02747
var_put_u32
[function]
[call site]
02748
rans_enc_func
[function]
[call site]
02749
arith_compress_to
[function]
[call site]
02750
arith_compress_bound
[function]
[call site]
02751
var_put_u32
[function]
[call site]
02752
var_put_u32
[function]
[call site]
02753
arith_compress_to
[function]
[call site]
02754
arith_compress_to
[function]
[call site]
02755
var_put_u32
[function]
[call site]
02756
var_put_u32
[function]
[call site]
02757
hts_pack
[function]
[call site]
02758
var_put_u32
[function]
[call site]
02759
BZ2_bzBuffToBuffCompress
[call site]
02760
arith_compress_O0_RLE
[function]
[call site]
02761
arith_compress_bound
[function]
[call site]
02762
SIMPLE_MODEL256_init
[function]
[call site]
02763
htscodecs_tls_alloc
[function]
[call site]
02764
SIMPLE_MODEL258_init
[function]
[call site]
02765
RC_SetOutput
[function]
[call site]
02766
RC_SetOutputEnd
[function]
[call site]
02767
RC_StartEncode
[function]
[call site]
02768
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02769
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02770
SIMPLE_MODEL258_normalize
[function]
[call site]
02771
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02772
RC_FinishEncode
[function]
[call site]
02773
htscodecs_tls_free
[function]
[call site]
02774
RC_OutSize
[function]
[call site]
02775
htscodecs_tls_free
[function]
[call site]
02776
arith_compress_O1_RLE
[function]
[call site]
02777
arith_compress_bound
[function]
[call site]
02778
htscodecs_tls_alloc
[function]
[call site]
02779
SIMPLE_MODEL256_init
[function]
[call site]
02780
htscodecs_tls_alloc
[function]
[call site]
02781
htscodecs_tls_free
[function]
[call site]
02782
SIMPLE_MODEL258_init
[function]
[call site]
02783
RC_SetOutput
[function]
[call site]
02784
RC_SetOutputEnd
[function]
[call site]
02785
RC_StartEncode
[function]
[call site]
02786
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02787
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02788
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02789
RC_FinishEncode
[function]
[call site]
02790
htscodecs_tls_free
[function]
[call site]
02791
htscodecs_tls_free
[function]
[call site]
02792
RC_OutSize
[function]
[call site]
02793
htscodecs_tls_free
[function]
[call site]
02794
htscodecs_tls_free
[function]
[call site]
02795
arith_compress_O1
[function]
[call site]
02796
arith_compress_bound
[function]
[call site]
02797
htscodecs_tls_alloc
[function]
[call site]
02798
SIMPLE_MODEL256_init
[function]
[call site]
02799
RC_SetOutput
[function]
[call site]
02800
RC_SetOutputEnd
[function]
[call site]
02801
RC_StartEncode
[function]
[call site]
02802
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02803
RC_FinishEncode
[function]
[call site]
02804
htscodecs_tls_free
[function]
[call site]
02805
RC_OutSize
[function]
[call site]
02806
htscodecs_tls_free
[function]
[call site]
02807
arith_compress_O0
[function]
[call site]
02808
arith_compress_bound
[function]
[call site]
02809
SIMPLE_MODEL256_init
[function]
[call site]
02810
RC_SetOutput
[function]
[call site]
02811
RC_SetOutputEnd
[function]
[call site]
02812
RC_StartEncode
[function]
[call site]
02813
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02814
RC_FinishEncode
[function]
[call site]
02815
RC_OutSize
[function]
[call site]
02816
tok3_encode_names
[function]
[call site]
02817
create_context
[function]
[call site]
02818
build_trie
[function]
[call site]
02819
calloc
[call site]
02820
pool_create
[function]
[call site]
02821
pool_alloc
[function]
[call site]
02822
new_pool
[function]
[call site]
02823
realloc
[call site]
02824
free_context
[function]
[call site]
02825
free_context
[function]
[call site]
02826
encode_name
[function]
[call site]
02827
search_trie
[function]
[call site]
02828
__ctype_b_loc
[call site]
02829
__ctype_b_loc
[call site]
02830
__ctype_b_loc
[call site]
02831
__ctype_b_loc
[call site]
02832
__ctype_b_loc
[call site]
02833
calloc
[call site]
02834
__ctype_b_loc
[call site]
02835
strlen
[call site]
02836
encode_token_dup
[function]
[call site]
02837
encode_token_int
[function]
[call site]
02838
encode_token_type
[function]
[call site]
02839
descriptor_grow
[function]
[call site]
02840
realloc
[call site]
02841
descriptor_grow
[function]
[call site]
02842
encode_token_diff
[function]
[call site]
02843
encode_token_int
[function]
[call site]
02844
encode_token_char
[function]
[call site]
02845
encode_token_type
[function]
[call site]
02846
descriptor_grow
[function]
[call site]
02847
memcmp
[call site]
02848
encode_token_match
[function]
[call site]
02849
encode_token_type
[function]
[call site]
02850
encode_token_alpha
[function]
[call site]
02851
encode_token_type
[function]
[call site]
02852
descriptor_grow
[function]
[call site]
02853
encode_token_alpha
[function]
[call site]
02854
__ctype_b_loc
[call site]
02855
__ctype_b_loc
[call site]
02856
__ctype_b_loc
[call site]
02857
memcmp
[call site]
02858
encode_token_match
[function]
[call site]
02859
encode_token_alpha
[function]
[call site]
02860
encode_token_alpha
[function]
[call site]
02861
__ctype_b_loc
[call site]
02862
encode_token_match
[function]
[call site]
02863
encode_token_int1
[function]
[call site]
02864
encode_token_type
[function]
[call site]
02865
descriptor_grow
[function]
[call site]
02866
encode_token_int1_
[function]
[call site]
02867
descriptor_grow
[function]
[call site]
02868
encode_token_int
[function]
[call site]
02869
encode_token_int1_
[function]
[call site]
02870
encode_token_int
[function]
[call site]
02871
__ctype_b_loc
[call site]
02872
__ctype_b_loc
[call site]
02873
encode_token_match
[function]
[call site]
02874
encode_token_int1
[function]
[call site]
02875
encode_token_int
[function]
[call site]
02876
encode_token_int
[function]
[call site]
02877
encode_token_match
[function]
[call site]
02878
encode_token_char
[function]
[call site]
02879
encode_token_char
[function]
[call site]
02880
encode_token_end
[function]
[call site]
02881
encode_token_type
[function]
[call site]
02882
realloc
[call site]
02883
free_context
[function]
[call site]
02884
arith_compress_bound
[function]
[call site]
02885
free_context
[function]
[call site]
02886
compress
[function]
[call site]
02887
arith_encode
[function]
[call site]
02888
arith_compress_to
[function]
[call site]
02889
var_put_u32
[function]
[call site]
02890
rans_encode
[function]
[call site]
02891
rans_compress_to_4x16
[function]
[call site]
02892
var_put_u32
[function]
[call site]
02893
free_context
[function]
[call site]
02894
memcmp
[call site]
02895
free_context
[function]
[call site]
02896
free_context
[function]
[call site]
02897
pthread_mutex_lock
[call site]
02898
pthread_mutex_unlock
[call site]
02899
pthread_mutex_unlock
[call site]
02900
cram_compress_by_method
[function]
[call site]
02901
cram_block_method2str
[function]
[call site]
02902
hts_log
[function]
[call site]
02903
pthread_mutex_lock
[call site]
02904
pthread_mutex_unlock
[call site]
02905
cram_compress_block3
[function]
[call site]
02906
cram_compress_by_method
[function]
[call site]
02907
hts_log
[function]
[call site]
02908
cram_block_method2str
[function]
[call site]
02909
hts_log
[function]
[call site]
02910
pthread_mutex_lock
[call site]
02911
pthread_mutex_unlock
[call site]
02912
cram_compress_block2
[function]
[call site]
02913
cram_compress_block2
[function]
[call site]
02914
cram_compress_block2
[function]
[call site]
02915
cram_compress_block2
[function]
[call site]
02916
cram_compress_block2
[function]
[call site]
02917
cram_compress_block2
[function]
[call site]
02918
cram_compress_block2
[function]
[call site]
02919
cram_compress_block2
[function]
[call site]
02920
cram_compress_block2
[function]
[call site]
02921
cram_compress_block2
[function]
[call site]
02922
cram_compress_block2
[function]
[call site]
02923
cram_compress_block2
[function]
[call site]
02924
cram_compress_block2
[function]
[call site]
02925
cram_compress_block2
[function]
[call site]
02926
cram_compress_block2
[function]
[call site]
02927
hts_realloc_p
[function]
[call site]
02928
cram_free_block
[function]
[call site]
02929
cram_encode_slice_header
[function]
[call site]
02930
cram_new_block
[function]
[call site]
02931
hts_malloc_pse
[function]
[call site]
02932
hts_add_sat2
[function]
[call site]
02933
hts_prod_sat2
[function]
[call site]
02934
hts_add_sat2
[function]
[call site]
02935
hts_malloc
[function]
[call site]
02936
cram_free_block
[function]
[call site]
02937
hts_log
[function]
[call site]
02938
cram_free_block
[function]
[call site]
02939
__assert_fail
[call site]
02940
cram_encode_compression_header
[function]
[call site]
02941
cram_new_block
[function]
[call site]
02942
cram_new_block
[function]
[call site]
02943
itf8_put_blk
[function]
[call site]
02944
itf8_put
[function]
[call site]
02945
block_append
[function]
[call site]
02946
itf8_put_blk
[function]
[call site]
02947
itf8_put_blk
[function]
[call site]
02948
itf8_put_blk
[function]
[call site]
02949
itf8_put_blk
[function]
[call site]
02950
itf8_put_blk
[function]
[call site]
02951
kh_destroy_map
[function]
[call site]
02952
kh_init_map
[function]
[call site]
02953
calloc
[call site]
02954
kh_put_map
[function]
[call site]
02955
kh_resize_map
[function]
[call site]
02956
__errno_location
[call site]
02957
realloc
[call site]
02958
__ac_FNV1a_hash_string
[function]
[call site]
02959
strcmp
[call site]
02960
kh_put_map
[function]
[call site]
02961
kh_put_map
[function]
[call site]
02962
kh_put_map
[function]
[call site]
02963
kh_put_map
[function]
[call site]
02964
kh_put_map
[function]
[call site]
02965
kh_put_map
[function]
[call site]
02966
kh_put_map
[function]
[call site]
02967
block_append
[function]
[call site]
02968
block_append_char
[function]
[call site]
02969
sub_idx
[function]
[call site]
02970
sub_idx
[function]
[call site]
02971
sub_idx
[function]
[call site]
02972
sub_idx
[function]
[call site]
02973
sub_idx
[function]
[call site]
02974
sub_idx
[function]
[call site]
02975
sub_idx
[function]
[call site]
02976
sub_idx
[function]
[call site]
02977
sub_idx
[function]
[call site]
02978
sub_idx
[function]
[call site]
02979
sub_idx
[function]
[call site]
02980
sub_idx
[function]
[call site]
02981
sub_idx
[function]
[call site]
02982
sub_idx
[function]
[call site]
02983
sub_idx
[function]
[call site]
02984
sub_idx
[function]
[call site]
02985
sub_idx
[function]
[call site]
02986
sub_idx
[function]
[call site]
02987
sub_idx
[function]
[call site]
02988
sub_idx
[function]
[call site]
02989
block_append
[function]
[call site]
02990
block_append
[function]
[call site]
02991
block_append
[function]
[call site]
02992
block_append
[function]
[call site]
02993
block_append
[function]
[call site]
02994
hts_log
[function]
[call site]
02995
cram_free_block
[function]
[call site]
02996
hts_malloc_p
[function]
[call site]
02997
cram_ref_decr
[function]
[call site]
02998
cram_ref_decr
[function]
[call site]
02999
cram_flush_container2
[function]
[call site]
03000
htell
[function]
[call site]
03001
cram_write_container
[function]
[call site]
03002
itf8_put
[function]
[call site]
03003
crc32
[call site]
03004
hwrite
[function]
[call site]
03005
htell
[function]
[call site]
03006
cram_write_block
[function]
[call site]
03007
__assert_fail
[call site]
03008
hputc
[function]
[call site]
03009
hputc2
[function]
[call site]
03010
flush_buffer
[function]
[call site]
03011
hputc
[function]
[call site]
03012
hwrite
[function]
[call site]
03013
hwrite
[function]
[call site]
03014
hwrite
[function]
[call site]
03015
__assert_fail
[call site]
03016
crc32
[call site]
03017
crc32
[call site]
03018
crc32
[call site]
03019
int32_encode
[function]
[call site]
03020
hwrite
[function]
[call site]
03021
htell
[function]
[call site]
03022
cram_write_block
[function]
[call site]
03023
cram_write_block
[function]
[call site]
03024
htell
[function]
[call site]
03025
cram_index_slice
[function]
[call site]
03026
hts_log
[function]
[call site]
03027
cram_index_build_multiref
[function]
[call site]
03028
cram_decode_slice
[function]
[call site]
03029
cram_dependent_data_series
[function]
[call site]
03030
cram_uncompress_block
[function]
[call site]
03031
cram_uncompress_block
[function]
[call site]
03032
hts_calloc_ps
[function]
[call site]
03033
cram_codec_to_id
[function]
[call site]
03034
cram_codec_to_id
[function]
[call site]
03035
cram_codec_to_id
[function]
[call site]
03036
hts_log
[function]
[call site]
03037
cram_uncompress_block
[function]
[call site]
03038
cram_codec_to_id
[function]
[call site]
03039
cram_uncompress_block
[function]
[call site]
03040
cram_codec_to_id
[function]
[call site]
03041
cram_codec_to_id
[function]
[call site]
03042
block_resize_exact
[function]
[call site]
03043
block_resize_exact
[function]
[call site]
03044
block_resize_exact
[function]
[call site]
03045
strcmp
[call site]
03046
hts_malloc_p
[function]
[call site]
03047
hts_log
[function]
[call site]
03048
cram_get_block_by_id
[function]
[call site]
03049
cram_uncompress_block
[function]
[call site]
03050
hts_log
[function]
[call site]
03051
cram_get_ref
[function]
[call site]
03052
hts_log
[function]
[call site]
03053
pthread_mutex_lock
[call site]
03054
pthread_mutex_lock
[call site]
03055
pthread_mutex_unlock
[call site]
03056
pthread_mutex_unlock
[call site]
03057
hts_log
[function]
[call site]
03058
memcmp
[call site]
03059
hts_log
[function]
[call site]
03060
hts_log
[function]
[call site]
03061
hts_md5_init
[function]
[call site]
03062
hts_md5_update
[function]
[call site]
03063
hts_md5_final
[function]
[call site]
03064
hts_md5_destroy
[function]
[call site]
03065
cram_get_block_by_id
[function]
[call site]
03066
hts_md5_init
[function]
[call site]
03067
hts_md5_update
[function]
[call site]
03068
hts_md5_final
[function]
[call site]
03069
hts_md5_destroy
[function]
[call site]
03070
memcmp
[call site]
03071
sam_hdr_tid2name
[function]
[call site]
03072
hts_log
[function]
[call site]
03073
md5_print
[function]
[call site]
03074
hts_log
[function]
[call site]
03075
md5_print
[function]
[call site]
03076
hts_log
[function]
[call site]
03077
sam_hdr_find_tag_id
[function]
[call site]
03078
sam_hdr_fill_hrecs
[function]
[call site]
03079
sam_hrecs_find_type_id
[function]
[call site]
03080
sam_hrecs_find_key
[function]
[call site]
03081
kputsn
[function]
[call site]
03082
hts_log
[function]
[call site]
03083
hts_log
[function]
[call site]
03084
ks_free
[function]
[call site]
03085
ks_initialize
[function]
[call site]
03086
pthread_mutex_lock
[call site]
03087
pthread_mutex_lock
[call site]
03088
calloc
[call site]
03089
pthread_mutex_unlock
[call site]
03090
pthread_mutex_unlock
[call site]
03091
hts_log
[function]
[call site]
03092
pthread_mutex_lock
[call site]
03093
pthread_mutex_unlock
[call site]
03094
cram_get_ref
[function]
[call site]
03095
pthread_mutex_lock
[call site]
03096
pthread_mutex_unlock
[call site]
03097
pthread_mutex_lock
[call site]
03098
pthread_mutex_unlock
[call site]
03099
cram_ref_decr
[function]
[call site]
03100
pthread_mutex_lock
[call site]
03101
pthread_mutex_lock
[call site]
03102
pthread_mutex_unlock
[call site]
03103
pthread_mutex_unlock
[call site]
03104
hts_log
[function]
[call site]
03105
hts_log
[function]
[call site]
03106
pthread_mutex_lock
[call site]
03107
pthread_mutex_unlock
[call site]
03108
hts_log
[function]
[call site]
03109
hts_log
[function]
[call site]
03110
hts_log
[function]
[call site]
03111
cram_decode_tlen
[function]
[call site]
03112
cram_decode_tlen
[function]
[call site]
03113
cram_decode_tlen
[function]
[call site]
03114
cram_decode_aux_1_0
[function]
[call site]
03115
map_find
[function]
[call site]
03116
block_append
[function]
[call site]
03117
cram_decode_aux
[function]
[call site]
03118
strlen
[call site]
03119
map_find
[function]
[call site]
03120
block_append
[function]
[call site]
03121
aux_ele_size
[function]
[call site]
03122
hts_log
[function]
[call site]
03123
block_resize
[function]
[call site]
03124
block_resize
[function]
[call site]
03125
hts_log
[function]
[call site]
03126
cram_decode_seq
[function]
[call site]
03127
block_append
[function]
[call site]
03128
hts_realloc_p
[function]
[call site]
03129
hts_log
[function]
[call site]
03130
hts_log
[function]
[call site]
03131
memchr
[call site]
03132
add_md_char
[function]
[call site]
03133
block_append_uint
[function]
[call site]
03134
block_grow
[function]
[call site]
03135
append_uint32
[function]
[call site]
03136
block_append_char
[function]
[call site]
03137
block_append_uint
[function]
[call site]
03138
add_md_char
[function]
[call site]
03139
block_append_uint
[function]
[call site]
03140
block_append_char
[function]
[call site]
03141
block_append
[function]
[call site]
03142
block_append_char
[function]
[call site]
03143
block_append
[function]
[call site]
03144
block_append_uint
[function]
[call site]
03145
block_append_uint
[function]
[call site]
03146
block_append_uint
[function]
[call site]
03147
block_append_char
[function]
[call site]
03148
block_append_uint
[function]
[call site]
03149
block_append_char
[function]
[call site]
03150
hts_log
[function]
[call site]
03151
memchr
[call site]
03152
add_md_char
[function]
[call site]
03153
hts_realloc_p
[function]
[call site]
03154
block_append_uint
[function]
[call site]
03155
hts_realloc_p
[function]
[call site]
03156
block_append_char
[function]
[call site]
03157
block_append
[function]
[call site]
03158
hts_log
[function]
[call site]
03159
pthread_mutex_lock
[call site]
03160
cram_ref_decr
[function]
[call site]
03161
cram_ref_decr
[function]
[call site]
03162
pthread_mutex_unlock
[call site]
03163
cram_decode_slice_xref
[function]
[call site]
03164
hts_log
[function]
[call site]
03165
cram_free_block
[function]
[call site]
03166
block_resize_exact
[function]
[call site]
03167
block_resize_exact
[function]
[call site]
03168
block_resize_exact
[function]
[call site]
03169
block_resize_exact
[function]
[call site]
03170
bulk_cram_to_bam
[function]
[call site]
03171
pthread_mutex_lock
[call site]
03172
pthread_mutex_unlock
[call site]
03173
hts_realloc_p
[function]
[call site]
03174
bam_set_mempolicy
[function]
[call site]
03175
calloc
[call site]
03176
calloc
[call site]
03177
bam_set_mempolicy
[function]
[call site]
03178
cram_to_bam
[function]
[call site]
03179
hts_log
[function]
[call site]
03180
strlen
[call site]
03181
append_uint64
[function]
[call site]
03182
append_uint32
[function]
[call site]
03183
append_uint32
[function]
[call site]
03184
append_sub32
[function]
[call site]
03185
append_uint32
[function]
[call site]
03186
append_sub32
[function]
[call site]
03187
append_uint64
[function]
[call site]
03188
bam_set1
[function]
[call site]
03189
bam_cigar2rqlens
[function]
[call site]
03190
hts_log
[function]
[call site]
03191
__errno_location
[call site]
03192
hts_log
[function]
[call site]
03193
__errno_location
[call site]
03194
hts_log
[function]
[call site]
03195
__errno_location
[call site]
03196
hts_log
[function]
[call site]
03197
__errno_location
[call site]
03198
subtract_check_underflow
[function]
[call site]
03199
subtract_check_underflow
[function]
[call site]
03200
subtract_check_underflow
[function]
[call site]
03201
subtract_check_underflow
[function]
[call site]
03202
subtract_check_underflow
[function]
[call site]
03203
hts_log
[function]
[call site]
03204
__errno_location
[call site]
03205
hts_add_sat2
[function]
[call site]
03206
realloc_bam_data
[function]
[call site]
03207
sam_realloc_bam_data
[function]
[call site]
03208
__errno_location
[call site]
03209
__errno_location
[call site]
03210
bam_get_mempolicy
[function]
[call site]
03211
realloc
[call site]
03212
bam_get_mempolicy
[function]
[call site]
03213
bam_set_mempolicy
[function]
[call site]
03214
hts_reg2bin
[function]
[call site]
03215
strncpy
[call site]
03216
bam_tag2cigar
[function]
[call site]
03217
bam_aux_get
[function]
[call site]
03218
__errno_location
[call site]
03219
__errno_location
[call site]
03220
__errno_location
[call site]
03221
le_to_u32
[function]
[call site]
03222
possibly_expand_bam_data
[function]
[call site]
03223
__errno_location
[call site]
03224
sam_realloc_bam_data
[function]
[call site]
03225
bam_endpos
[function]
[call site]
03226
bam_cigar2rlen
[function]
[call site]
03227
hts_reg2bin
[function]
[call site]
03228
hts_log
[function]
[call site]
03229
pthread_mutex_lock
[call site]
03230
cram_ref_decr
[function]
[call site]
03231
pthread_mutex_unlock
[call site]
03232
hts_log
[function]
[call site]
03233
snprintf
[call site]
03234
strlen
[call site]
03235
bgzf_write
[function]
[call site]
03236
hwrite
[function]
[call site]
03237
__assert_fail
[call site]
03238
lazy_flush
[function]
[call site]
03239
mt_queue
[function]
[call site]
03240
bgzf_flush
[function]
[call site]
03241
snprintf
[call site]
03242
strlen
[call site]
03243
bgzf_write
[function]
[call site]
03244
snprintf
[call site]
03245
strlen
[call site]
03246
bgzf_write
[function]
[call site]
03247
__errno_location
[call site]
03248
hts_tpool_dispatch2
[function]
[call site]
03249
hts_tpool_dispatch3
[function]
[call site]
03250
cram_flush_thread
[function]
[call site]
03251
cram_encode_container
[function]
[call site]
03252
hts_log
[function]
[call site]
03253
__errno_location
[call site]
03254
cram_flush_result
[function]
[call site]
03255
hts_tpool_next_result
[function]
[call site]
03256
pthread_mutex_lock
[call site]
03257
hts_tpool_next_result_locked
[function]
[call site]
03258
pthread_mutex_unlock
[call site]
03259
hts_tpool_result_data
[function]
[call site]
03260
hts_tpool_delete_result
[function]
[call site]
03261
cram_flush_container2
[function]
[call site]
03262
cram_free_slice
[function]
[call site]
03263
cram_free_slice
[function]
[call site]
03264
cram_free_container
[function]
[call site]
03265
hts_tpool_delete_result
[function]
[call site]
03266
cram_free_container
[function]
[call site]
03267
hts_usleep
[function]
[call site]
03268
cram_drain_rqueue
[function]
[call site]
03269
hts_tpool_process_flush
[function]
[call site]
03270
cram_flush_result
[function]
[call site]
03271
hts_tpool_process_destroy
[function]
[call site]
03272
pthread_mutex_destroy
[call site]
03273
pthread_mutex_destroy
[call site]
03274
pthread_mutex_destroy
[call site]
03275
pthread_mutex_destroy
[call site]
03276
cram_write_eof_block
[function]
[call site]
03277
cram_encode_compression_header
[function]
[call site]
03278
cram_write_container
[function]
[call site]
03279
cram_write_block
[function]
[call site]
03280
cram_close
[function]
[call site]
03281
free_bam_list
[function]
[call site]
03282
hclose
[function]
[call site]
03283
cram_free_file_def
[function]
[call site]
03284
sam_hdr_destroy
[function]
[call site]
03285
cram_free_container
[function]
[call site]
03286
cram_free_container
[function]
[call site]
03287
refs_free
[function]
[call site]
03288
kh_destroy_m_metrics
[function]
[call site]
03289
cram_index_free
[function]
[call site]
03290
cram_index_free_recurse
[function]
[call site]
03291
cram_index_free_recurse
[function]
[call site]
03292
hts_tpool_destroy
[function]
[call site]
03293
bgzf_close
[function]
[call site]
03294
cram_free_block
[function]
[call site]
03295
kh_destroy_map
[function]
[call site]
03296
cram_free_block
[function]
[call site]
03297
sam_state_destroy
[function]
[call site]
03298
fastq_state_destroy
[function]
[call site]
03299
kh_destroy_tag
[function]
[call site]
03300
ks_free
[function]
[call site]
03301
ks_initialize
[function]
[call site]
03302
ks_free
[function]
[call site]
03303
ks_free
[function]
[call site]
03304
regfree
[call site]
03305
bgzf_close
[function]
[call site]
03306
hclose
[function]
[call site]
03307
hts_idx_close_otf_fp
[function]
[call site]
03308
need_idx_ugly_delay_hack
[function]
[call site]
03309
idx_write_uint64
[function]
[call site]
03310
ed_is_big
[function]
[call site]
03311
ed_swap_8
[function]
[call site]
03312
bgzf_write
[function]
[call site]
03313
bgzf_close
[function]
[call site]
03314
sam_hdr_destroy
[function]
[call site]
03315
hts_idx_destroy
[function]
[call site]
03316
cram_index_free
[function]
[call site]
03317
kh_destroy_bin
[function]
[call site]
03318
hts_filter_free
[function]
[call site]
03319
__errno_location
[call site]
03320
view_sam
[function]
[call site]
03321
abort
[call site]
03322
hopen
[function]
[call site]
03323
hts_hopen
[function]
[call site]
03324
hclose
[function]
[call site]
03325
abort
[call site]
03326
hts_open
[function]
[call site]
03327
hts_open_format
[function]
[call site]
03328
strncpy
[call site]
03329
strchr
[call site]
03330
strchr
[call site]
03331
strchr
[call site]
03332
strstr
[call site]
03333
strdup
[call site]
03334
hopen
[function]
[call site]
03335
hts_hopen
[function]
[call site]
03336
hts_opt_apply
[function]
[call site]
03337
__errno_location
[call site]
03338
__errno_location
[call site]
03339
__errno_location
[call site]
03340
__errno_location
[call site]
03341
strerror
[call site]
03342
hts_log
[function]
[call site]
03343
hclose_abruptly
[function]
[call site]
03344
abort
[call site]
03345
sam_hdr_read
[function]
[call site]
03346
__errno_location
[call site]
03347
bam_hdr_read
[function]
[call site]
03348
bgzf_check_EOF
[function]
[call site]
03349
pthread_mutex_lock
[call site]
03350
pthread_cond_signal
[call site]
03351
hts_tpool_wake_dispatch
[function]
[call site]
03352
pthread_mutex_unlock
[call site]
03353
pthread_cond_wait
[call site]
03354
pthread_cond_signal
[call site]
03355
abort
[call site]
03356
pthread_mutex_unlock
[call site]
03357
bgzf_check_EOF_common
[function]
[call site]
03358
htell
[function]
[call site]
03359
hseek
[function]
[call site]
03360
__errno_location
[call site]
03361
hclearerr
[function]
[call site]
03362
__errno_location
[call site]
03363
hclearerr
[function]
[call site]
03364
hread
[function]
[call site]
03365
hseek
[function]
[call site]
03366
memcmp
[call site]
03367
perror
[call site]
03368
hts_log
[function]
[call site]
03369
bgzf_read
[function]
[call site]
03370
memcmp
[call site]
03371
hts_log
[function]
[call site]
03372
sam_hdr_init
[function]
[call site]
03373
bgzf_read
[function]
[call site]
03374
le_to_u32
[function]
[call site]
03375
bgzf_read
[function]
[call site]
03376
bgzf_read
[function]
[call site]
03377
ed_swap_4p
[function]
[call site]
03378
ed_swap_4
[function]
[call site]
03379
calloc
[call site]
03380
calloc
[call site]
03381
bgzf_read
[function]
[call site]
03382
ed_swap_4p
[function]
[call site]
03383
bgzf_read
[function]
[call site]
03384
realloc
[call site]
03385
bgzf_read
[function]
[call site]
03386
ed_swap_4p
[function]
[call site]
03387
hts_log
[function]
[call site]
03388
hts_log
[function]
[call site]
03389
hts_log
[function]
[call site]
03390
sam_hdr_destroy
[function]
[call site]
03391
sam_hdr_sanitise
[function]
[call site]
03392
hts_log
[function]
[call site]
03393
sam_hdr_destroy
[function]
[call site]
03394
hts_log
[function]
[call site]
03395
hts_log
[function]
[call site]
03396
sam_hdr_destroy
[function]
[call site]
03397
realloc
[call site]
03398
sam_hdr_destroy
[function]
[call site]
03399
sam_hdr_dup
[function]
[call site]
03400
sam_hdr_init
[function]
[call site]
03401
calloc
[call site]
03402
calloc
[call site]
03403
strdup
[call site]
03404
sam_hdr_dup_sdict
[function]
[call site]
03405
kh_init_s2i
[function]
[call site]
03406
kh_get_s2i
[function]
[call site]
03407
kh_put_s2i
[function]
[call site]
03408
kh_destroy_s2i
[function]
[call site]
03409
sam_hrecs_rebuild_text
[function]
[call site]
03410
kputsn
[function]
[call site]
03411
sam_hrecs_rebuild_lines
[function]
[call site]
03412
kputsn
[function]
[call site]
03413
build_header_line
[function]
[call site]
03414
kputc_
[function]
[call site]
03415
kputsn
[function]
[call site]
03416
kputc_
[function]
[call site]
03417
kputsn
[function]
[call site]
03418
kputc
[function]
[call site]
03419
ks_release
[function]
[call site]
03420
ks_release
[function]
[call site]
03421
sam_hdr_update_target_arrays
[function]
[call site]
03422
hts_malloc_ps
[function]
[call site]
03423
sam_hdr_destroy
[function]
[call site]
03424
sam_hdr_sanitise
[function]
[call site]
03425
sam_hdr_create
[function]
[call site]
03426
sam_hdr_init
[function]
[call site]
03427
sam_hdr_build_from_sam_file
[function]
[call site]
03428
sam_hrecs_new
[function]
[call site]
03429
hts_getline
[function]
[call site]
03430
hts_log
[function]
[call site]
03431
abort
[call site]
03432
kgetline2
[function]
[call site]
03433
ks_resize
[function]
[call site]
03434
hgetln_wrapper
[function]
[call site]
03435
hgetln
[function]
[call site]
03436
herrno
[function]
[call site]
03437
__errno_location
[call site]
03438
bgzf_getline
[function]
[call site]
03439
bgzf_read_block
[function]
[call site]
03440
memchr
[call site]
03441
ks_expand
[function]
[call site]
03442
bgzf_htell
[function]
[call site]
03443
abort
[call site]
03444
isalpha_c
[function]
[call site]
03445
sam_hrecs_error
[function]
[call site]
03446
strncmp
[call site]
03447
kputc
[function]
[call site]
03448
valid_sam_header_type
[function]
[call site]
03449
hts_log
[function]
[call site]
03450
warn_if_known_stderr
[function]
[call site]
03451
sam_hrecs_parse_single_line
[function]
[call site]
03452
TYPEKEY
[function]
[call site]
03453
kputsn
[function]
[call site]
03454
kputc
[function]
[call site]
03455
bgzf_peek
[function]
[call site]
03456
bgzf_read_block
[function]
[call site]
03457
hts_log
[function]
[call site]
03458
hpeek
[function]
[call site]
03459
strstr
[call site]
03460
hopen
[function]
[call site]
03461
khgetline
[function]
[call site]
03462
kgetline
[function]
[call site]
03463
ks_resize
[function]
[call site]
03464
strlen
[call site]
03465
hgets_wrapper
[function]
[call site]
03466
hgets
[function]
[call site]
03467
strchr
[call site]
03468
strtoll
[call site]
03469
kputs
[function]
[call site]
03470
kputsn
[function]
[call site]
03471
kputs
[function]
[call site]
03472
kputll
[function]
[call site]
03473
kputc
[function]
[call site]
03474
sam_hrecs_parse_single_line
[function]
[call site]
03475
ks_free
[function]
[call site]
03476
hclose
[function]
[call site]
03477
hts_log
[function]
[call site]
03478
kh_grow_to_fit_m_s2i
[function]
[call site]
03479
hts_realloc_p
[function]
[call site]
03480
sam_hrecs_update_hashes
[function]
[call site]
03481
kputsn
[function]
[call site]
03482
ks_release
[function]
[call site]
03483
sam_hdr_update_target_arrays
[function]
[call site]
03484
ks_free
[function]
[call site]
03485
sam_hdr_destroy
[function]
[call site]
03486
sam_hdr_destroy
[function]
[call site]
03487
sam_hdr_sanitise
[function]
[call site]
03488
sam_hdr_init
[function]
[call site]
03489
__errno_location
[call site]
03490
__errno_location
[call site]
03491
sam_hdr_incr_ref
[function]
[call site]
03492
hts_close_or_abort
[function]
[call site]
03493
hts_close
[function]
[call site]
03494
abort
[call site]
03495
hts_close
[function]
[call site]
03496
hts_close
[function]
[call site]
03497
sam_hdr_count_lines
[function]
[call site]
03498
sam_hdr_fill_hrecs
[function]
[call site]
03499
sam_hrecs_find_type_id
[function]
[call site]
03500
sam_hdr_write
[function]
[call site]
03501
__errno_location
[call site]
03502
bam_hdr_write
[function]
[call site]
03503
sam_hrecs_rebuild_text
[function]
[call site]
03504
hts_log
[function]
[call site]
03505
hts_log
[function]
[call site]
03506
hts_log
[function]
[call site]
03507
hts_log
[function]
[call site]
03508
hts_log
[function]
[call site]
03509
hts_log
[function]
[call site]
03510
bgzf_write
[function]
[call site]
03511
ed_swap_4
[function]
[call site]
03512
bgzf_write
[function]
[call site]
03513
bgzf_write
[function]
[call site]
03514
ed_swap_4
[function]
[call site]
03515
bgzf_write
[function]
[call site]
03516
bgzf_write
[function]
[call site]
03517
bgzf_write
[function]
[call site]
03518
bgzf_write
[function]
[call site]
03519
strlen
[call site]
03520
ed_swap_4
[function]
[call site]
03521
bgzf_write
[function]
[call site]
03522
bgzf_write
[function]
[call site]
03523
bgzf_write
[function]
[call site]
03524
ed_swap_4
[function]
[call site]
03525
bgzf_write
[function]
[call site]
03526
bgzf_write
[function]
[call site]
03527
bgzf_flush
[function]
[call site]
03528
cram_set_header2
[function]
[call site]
03529
sam_hdr_destroy
[function]
[call site]
03530
sam_hdr_dup
[function]
[call site]
03531
refs_from_header
[function]
[call site]
03532
cram_load_reference
[function]
[call site]
03533
cram_write_SAM_hdr
[function]
[call site]
03534
cram_write_file_def
[function]
[call site]
03535
hwrite
[function]
[call site]
03536
sam_hrecs_find_rg
[function]
[call site]
03537
sam_hdr_add_line
[function]
[call site]
03538
sam_hdr_fill_hrecs
[function]
[call site]
03539
sam_hrecs_vadd
[function]
[call site]
03540
rebuild_target_arrays
[function]
[call site]
03541
redact_header_text
[function]
[call site]
03542
refs_from_header
[function]
[call site]
03543
refs2id
[function]
[call site]
03544
sam_hrecs_find_type_id
[function]
[call site]
03545
sam_hrecs_find_key
[function]
[call site]
03546
cram_get_ref
[function]
[call site]
03547
hts_log
[function]
[call site]
03548
hts_log
[function]
[call site]
03549
hts_log
[function]
[call site]
03550
pthread_mutex_lock
[call site]
03551
pthread_mutex_unlock
[call site]
03552
hts_md5_init
[function]
[call site]
03553
hts_md5_update
[function]
[call site]
03554
hts_md5_final
[function]
[call site]
03555
hts_md5_destroy
[function]
[call site]
03556
cram_ref_decr
[function]
[call site]
03557
hts_md5_hex
[function]
[call site]
03558
sam_hdr_update_line
[function]
[call site]
03559
sam_hdr_fill_hrecs
[function]
[call site]
03560
sam_hrecs_find_type_id
[function]
[call site]
03561
check_for_name_update
[function]
[call site]
03562
TYPEKEY
[function]
[call site]
03563
TYPEKEY
[function]
[call site]
03564
TYPEKEY
[function]
[call site]
03565
sam_hrecs_find_key
[function]
[call site]
03566
__assert_fail
[call site]
03567
strcmp
[call site]
03568
strcmp
[call site]
03569
kh_get_m_s2i
[function]
[call site]
03570
hts_log
[function]
[call site]
03571
TYPEKEY
[function]
[call site]
03572
hts_log
[function]
[call site]
03573
sam_hrecs_vupdate
[function]
[call site]
03574
kh_get_m_s2i
[function]
[call site]
03575
sam_hrecs_find_key
[function]
[call site]
03576
__assert_fail
[call site]
03577
__assert_fail
[call site]
03578
__assert_fail
[call site]
03579
kh_del_m_s2i
[function]
[call site]
03580
kh_put_m_s2i
[function]
[call site]
03581
hts_log
[function]
[call site]
03582
TYPEKEY
[function]
[call site]
03583
sam_hrecs_update_hashes
[function]
[call site]
03584
rebuild_target_arrays
[function]
[call site]
03585
redact_header_text
[function]
[call site]
03586
full_path
[function]
[call site]
03587
strlen
[call site]
03588
hisremote
[function]
[call site]
03589
hts_log
[function]
[call site]
03590
strncpy
[call site]
03591
toupper_c
[function]
[call site]
03592
strncpy
[call site]
03593
getcwd
[call site]
03594
strlen
[call site]
03595
strncpy
[call site]
03596
snprintf
[call site]
03597
sam_hdr_update_line
[function]
[call site]
03598
sam_hdr_remove_tag_all
[function]
[call site]
03599
sam_hdr_fill_hrecs
[function]
[call site]
03600
TYPEKEY
[function]
[call site]
03601
kh_get_sam_hrecs_t
[function]
[call site]
03602
sam_hrecs_remove_key
[function]
[call site]
03603
sam_hrecs_find_key
[function]
[call site]
03604
TYPEKEY
[function]
[call site]
03605
__assert_fail
[call site]
03606
sam_hrecs_find_key
[function]
[call site]
03607
__assert_fail
[call site]
03608
kh_get_m_s2i
[function]
[call site]
03609
sam_hrecs_remove_ref_altnames
[function]
[call site]
03610
kstrtok
[function]
[call site]
03611
ks_clear
[function]
[call site]
03612
kputsn
[function]
[call site]
03613
kh_get_m_s2i
[function]
[call site]
03614
strcmp
[call site]
03615
kh_del_m_s2i
[function]
[call site]
03616
pool_free
[function]
[call site]
03617
hts_log
[function]
[call site]
03618
sam_hdr_length
[function]
[call site]
03619
sam_hdr_rebuild
[function]
[call site]
03620
rebuild_target_arrays
[function]
[call site]
03621
hts_log
[function]
[call site]
03622
sam_hdr_link_pg
[function]
[call site]
03623
sam_hdr_fill_hrecs
[function]
[call site]
03624
hts_realloc_p
[function]
[call site]
03625
calloc
[call site]
03626
__assert_fail
[call site]
03627
kh_get_m_s2i
[function]
[call site]
03628
hts_log
[function]
[call site]
03629
hts_log
[function]
[call site]
03630
redact_header_text
[function]
[call site]
03631
hts_log
[function]
[call site]
03632
sam_hrecs_rebuild_text
[function]
[call site]
03633
ks_free
[function]
[call site]
03634
hts_log
[function]
[call site]
03635
ks_len
[function]
[call site]
03636
ks_release
[function]
[call site]
03637
hts_log
[function]
[call site]
03638
int32_encode
[function]
[call site]
03639
sam_hdr_str
[function]
[call site]
03640
sam_hdr_rebuild
[function]
[call site]
03641
hwrite
[function]
[call site]
03642
cram_new_block
[function]
[call site]
03643
cram_new_container
[function]
[call site]
03644
calloc
[call site]
03645
calloc
[call site]
03646
cram_new_compression_header
[function]
[call site]
03647
calloc
[call site]
03648
cram_new_block
[function]
[call site]
03649
kh_init_m_s2i
[function]
[call site]
03650
cram_free_block
[function]
[call site]
03651
string_pool_create
[function]
[call site]
03652
kh_destroy_m_s2i
[function]
[call site]
03653
cram_free_block
[function]
[call site]
03654
cram_stats_create
[function]
[call site]
03655
calloc
[call site]
03656
kh_init_m_tagmap
[function]
[call site]
03657
calloc
[call site]
03658
cram_free_block
[function]
[call site]
03659
cram_free_container
[function]
[call site]
03660
int32_put_blk
[function]
[call site]
03661
block_append
[function]
[call site]
03662
sam_hdr_str
[function]
[call site]
03663
block_append
[function]
[call site]
03664
cram_compress_block
[function]
[call site]
03665
cram_compress_block2
[function]
[call site]
03666
cram_free_block
[function]
[call site]
03667
cram_free_container
[function]
[call site]
03668
calloc
[call site]
03669
cram_free_block
[function]
[call site]
03670
cram_free_container
[function]
[call site]
03671
block_append
[function]
[call site]
03672
cram_write_container
[function]
[call site]
03673
cram_free_block
[function]
[call site]
03674
cram_free_container
[function]
[call site]
03675
cram_write_block
[function]
[call site]
03676
cram_free_block
[function]
[call site]
03677
cram_free_container
[function]
[call site]
03678
block_resize
[function]
[call site]
03679
cram_write_block
[function]
[call site]
03680
cram_free_block
[function]
[call site]
03681
cram_free_container
[function]
[call site]
03682
cram_free_block
[function]
[call site]
03683
cram_free_container
[function]
[call site]
03684
hflush
[function]
[call site]
03685
sam_hrecs_rebuild_text
[function]
[call site]
03686
strstr
[call site]
03687
bgzf_write
[function]
[call site]
03688
hwrite
[function]
[call site]
03689
kputsn
[function]
[call site]
03690
kputs
[function]
[call site]
03691
kputsn
[function]
[call site]
03692
kputw
[function]
[call site]
03693
kputc
[function]
[call site]
03694
bgzf_write
[function]
[call site]
03695
hwrite
[function]
[call site]
03696
bgzf_flush
[function]
[call site]
03697
hflush
[function]
[call site]
03698
__errno_location
[call site]
03699
sam_hdr_dup
[function]
[call site]
03700
sam_hdr_destroy
[function]
[call site]
03701
bam_init1
[function]
[call site]
03702
calloc
[call site]
03703
sam_read1
[function]
[call site]
03704
sam_read1_bam
[function]
[call site]
03705
bam_read1
[function]
[call site]
03706
bgzf_read_small
[function]
[call site]
03707
bgzf_read
[function]
[call site]
03708
ed_swap_4p
[function]
[call site]
03709
bgzf_read
[function]
[call site]
03710
le_to_u32
[function]
[call site]
03711
le_to_i32
[function]
[call site]
03712
le_to_u32
[function]
[call site]
03713
le_to_u32
[function]
[call site]
03714
le_to_u32
[function]
[call site]
03715
le_to_u32
[function]
[call site]
03716
le_to_i32
[function]
[call site]
03717
le_to_i32
[function]
[call site]
03718
realloc_bam_data
[function]
[call site]
03719
bgzf_read_small
[function]
[call site]
03720
fixup_missing_qname_nul
[function]
[call site]
03721
realloc_bam_data
[function]
[call site]
03722
bgzf_read_small
[function]
[call site]
03723
swap_data
[function]
[call site]
03724
ed_swap_4p
[function]
[call site]
03725
bam_tag2cigar
[function]
[call site]
03726
bam_cigar2rqlens
[function]
[call site]
03727
hts_reg2bin
[function]
[call site]
03728
hts_log
[function]
[call site]
03729
__errno_location
[call site]
03730
sam_read1_cram
[function]
[call site]
03731
cram_get_bam_seq
[function]
[call site]
03732
cram_get_seq
[function]
[call site]
03733
pthread_mutex_lock
[call site]
03734
pthread_mutex_unlock
[call site]
03735
cram_next_slice
[function]
[call site]
03736
cram_first_slice
[function]
[call site]
03737
cram_free_container
[function]
[call site]
03738
cram_read_container
[function]
[call site]
03739
cram_seek
[function]
[call site]
03740
cram_free_container
[function]
[call site]
03741
cram_read_container
[function]
[call site]
03742
cram_read_block
[function]
[call site]
03743
cram_decode_compression_header
[function]
[call site]
03744
calloc
[call site]
03745
cram_uncompress_block
[function]
[call site]
03746
hts_malloc_p
[function]
[call site]
03747
kh_init_map
[function]
[call site]
03748
cram_free_compression_header
[function]
[call site]
03749
cram_free_compression_header
[function]
[call site]
03750
kh_put_map
[function]
[call site]
03751
cram_free_compression_header
[function]
[call site]
03752
kh_put_map
[function]
[call site]
03753
cram_free_compression_header
[function]
[call site]
03754
kh_put_map
[function]
[call site]
03755
cram_free_compression_header
[function]
[call site]
03756
kh_put_map
[function]
[call site]
03757
cram_free_compression_header
[function]
[call site]
03758
cram_free_compression_header
[function]
[call site]
03759
kh_put_map
[function]
[call site]
03760
cram_free_compression_header
[function]
[call site]
03761
cram_decode_TD
[function]
[call site]
03762
cram_new_block
[function]
[call site]
03763
hts_log
[function]
[call site]
03764
cram_free_block
[function]
[call site]
03765
cram_free_block
[function]
[call site]
03766
cram_free_block
[function]
[call site]
03767
block_append
[function]
[call site]
03768
block_append_char
[function]
[call site]
03769
calloc
[call site]
03770
cram_free_block
[function]
[call site]
03771
cram_free_block
[function]
[call site]
03772
cram_free_compression_header
[function]
[call site]
03773
kh_put_map
[function]
[call site]
03774
cram_free_compression_header
[function]
[call site]
03775
hts_log
[function]
[call site]
03776
cram_free_compression_header
[function]
[call site]
03777
cram_free_compression_header
[function]
[call site]
03778
cram_free_compression_header
[function]
[call site]
03779
hts_log
[function]
[call site]
03780
hts_log
[function]
[call site]
03781
cram_decoder_init
[function]
[call site]
03782
cram_encoding2str
[function]
[call site]
03783
hts_log
[function]
[call site]
03784
cram_free_compression_header
[function]
[call site]
03785
cram_free_compression_header
[function]
[call site]
03786
cram_free_compression_header
[function]
[call site]
03787
cram_free_compression_header
[function]
[call site]
03788
cram_decoder_init
[function]
[call site]
03789
cram_free_compression_header
[function]
[call site]
03790
cram_free_compression_header
[function]
[call site]
03791
sam_hrecs_sort_order
[function]
[call site]
03792
TYPEKEY
[function]
[call site]
03793
kh_get_sam_hrecs_t
[function]
[call site]
03794
strcmp
[call site]
03795
strcmp
[call site]
03796
strcmp
[call site]
03797
strcmp
[call site]
03798
hts_log
[function]
[call site]
03799
pthread_mutex_lock
[call site]
03800
pthread_mutex_unlock
[call site]
03801
cram_free_slice
[function]
[call site]
03802
cram_free_container
[function]
[call site]
03803
cram_read_container
[function]
[call site]
03804
cram_free_container
[function]
[call site]
03805
cram_free_container
[function]
[call site]
03806
cram_free_container
[function]
[call site]
03807
cram_free_container
[function]
[call site]
03808
hseek
[function]
[call site]
03809
cram_read_block
[function]
[call site]
03810
cram_decode_compression_header
[function]
[call site]
03811
sam_hrecs_sort_order
[function]
[call site]
03812
pthread_mutex_lock
[call site]
03813
pthread_mutex_unlock
[call site]
03814
cram_free_container
[function]
[call site]
03815
cram_read_slice
[function]
[call site]
03816
cram_read_block
[function]
[call site]
03817
calloc
[call site]
03818
cram_decode_slice_header
[function]
[call site]
03819
cram_uncompress_block
[function]
[call site]
03820
calloc
[call site]
03821
hts_log
[function]
[call site]
03822
hts_malloc_p
[function]
[call site]
03823
cram_content_type2str
[function]
[call site]
03824
hts_log
[function]
[call site]
03825
hts_log
[function]
[call site]
03826
calloc
[call site]
03827
cram_read_block
[function]
[call site]
03828
calloc
[call site]
03829
hts_malloc_p
[function]
[call site]
03830
cram_new_block
[function]
[call site]
03831
cram_new_block
[function]
[call site]
03832
cram_new_block
[function]
[call site]
03833
cram_new_block
[function]
[call site]
03834
cram_new_block
[function]
[call site]
03835
cram_new_block
[function]
[call site]
03836
cram_free_block
[function]
[call site]
03837
cram_free_slice
[function]
[call site]
03838
cram_free_slice
[function]
[call site]
03839
cram_free_slice
[function]
[call site]
03840
cram_free_slice
[function]
[call site]
03841
cram_decode_slice_mt
[function]
[call site]
03842
cram_decode_slice
[function]
[call site]
03843
hts_tpool_process_sz
[function]
[call site]
03844
pthread_mutex_lock
[call site]
03845
pthread_mutex_unlock
[call site]
03846
__errno_location
[call site]
03847
__errno_location
[call site]
03848
hts_tpool_dispatch2
[function]
[call site]
03849
cram_decode_slice_thread
[function]
[call site]
03850
cram_decode_slice
[function]
[call site]
03851
__errno_location
[call site]
03852
__errno_location
[call site]
03853
hts_log
[function]
[call site]
03854
cram_free_slice
[function]
[call site]
03855
hts_tpool_process_len
[function]
[call site]
03856
pthread_mutex_lock
[call site]
03857
pthread_mutex_unlock
[call site]
03858
hts_tpool_process_qsize
[function]
[call site]
03859
hts_tpool_process_empty
[function]
[call site]
03860
hts_tpool_next_result_wait
[function]
[call site]
03861
hts_tpool_result_data
[function]
[call site]
03862
hts_log
[function]
[call site]
03863
hts_tpool_result_data
[function]
[call site]
03864
hts_log
[function]
[call site]
03865
hts_tpool_delete_result
[function]
[call site]
03866
hts_tpool_delete_result
[function]
[call site]
03867
cram_free_slice
[function]
[call site]
03868
cram_free_slice
[function]
[call site]
03869
bam_get_mempolicy
[function]
[call site]
03870
bam_copy1
[function]
[call site]
03871
realloc_bam_data
[function]
[call site]
03872
bam_set_mempolicy
[function]
[call site]
03873
cram_to_bam
[function]
[call site]
03874
cram_eof
[function]
[call site]
03875
sam_read1_sam
[function]
[call site]
03876
sam_parse1
[function]
[call site]
03877
strchr
[call site]
03878
hts_log
[function]
[call site]
03879
hts_log
[function]
[call site]
03880
possibly_expand_bam_data
[function]
[call site]
03881
parse_sam_flag
[function]
[call site]
03882
hts_str2uint
[function]
[call site]
03883
strtoul
[call site]
03884
strchr
[call site]
03885
strcmp
[call site]
03886
hts_log
[function]
[call site]
03887
bam_name2id
[function]
[call site]
03888
sam_hdr_name2tid
[function]
[call site]
03889
sam_hdr_fill_hrecs
[function]
[call site]
03890
kh_get_m_s2i
[function]
[call site]
03891
hts_strprint
[function]
[call site]
03892
isprint_c
[function]
[call site]
03893
__ctype_b_loc
[call site]
03894
strcpy
[call site]
03895
snprintf
[call site]
03896
hts_log
[function]
[call site]
03897
hts_str2uint
[function]
[call site]
03898
hts_log
[function]
[call site]
03899
hts_str2uint
[function]
[call site]
03900
bam_parse_cigar
[function]
[call site]
03901
hts_log
[function]
[call site]
03902
read_ncigar
[function]
[call site]
03903
isdigit_c
[function]
[call site]
03904
hts_log
[function]
[call site]
03905
hts_log
[function]
[call site]
03906
possibly_expand_bam_data
[function]
[call site]
03907
hts_log
[function]
[call site]
03908
parse_cigar
[function]
[call site]
03909
hts_str2uint
[function]
[call site]
03910
hts_log
[function]
[call site]
03911
hts_log
[function]
[call site]
03912
hts_log
[function]
[call site]
03913
bam_cigar2rlen
[function]
[call site]
03914
hts_log
[function]
[call site]
03915
strchr
[call site]
03916
hts_log
[function]
[call site]
03917
hts_reg2bin
[function]
[call site]
03918
strchr
[call site]
03919
strcmp
[call site]
03920
strcmp
[call site]
03921
bam_name2id
[function]
[call site]
03922
hts_log
[function]
[call site]
03923
hts_strprint
[function]
[call site]
03924
hts_log
[function]
[call site]
03925
hts_str2uint
[function]
[call site]
03926
hts_log
[function]
[call site]
03927
hts_str2int
[function]
[call site]
03928
hts_log
[function]
[call site]
03929
strchr
[call site]
03930
strcmp
[call site]
03931
hts_log
[function]
[call site]
03932
bam_cigar2qlen
[function]
[call site]
03933
hts_log
[function]
[call site]
03934
possibly_expand_bam_data
[function]
[call site]
03935
possibly_expand_bam_data
[function]
[call site]
03936
hts_log
[function]
[call site]
03937
aux_parse
[function]
[call site]
03938
isspace_c
[function]
[call site]
03939
isspace_c
[function]
[call site]
03940
isspace_c
[function]
[call site]
03941
kh_get_tag
[function]
[call site]
03942
possibly_expand_bam_data
[function]
[call site]
03943
isspace_c
[function]
[call site]
03944
hts_log
[function]
[call site]
03945
possibly_expand_bam_data
[function]
[call site]
03946
hts_str2int
[function]
[call site]
03947
i16_to_le
[function]
[call site]
03948
u16_to_le
[function]
[call site]
03949
i32_to_le
[function]
[call site]
03950
u32_to_le
[function]
[call site]
03951
hts_str2uint
[function]
[call site]
03952
u16_to_le
[function]
[call site]
03953
u32_to_le
[function]
[call site]
03954
strtod
[call site]
03955
float_to_le
[function]
[call site]
03956
u32_to_le
[function]
[call site]
03957
strtod
[call site]
03958
double_to_le
[function]
[call site]
03959
u64_to_le
[function]
[call site]
03960
strchr
[call site]
03961
strlen
[call site]
03962
isspace_c
[function]
[call site]
03963
hts_log
[function]
[call site]
03964
possibly_expand_bam_data
[function]
[call site]
03965
isspace_c
[function]
[call site]
03966
hts_log
[function]
[call site]
03967
sam_parse_B_vals
[function]
[call site]
03968
sam_parse_B_vals_r
[function]
[call site]
03969
hts_log
[function]
[call site]
03970
aux_type2size
[function]
[call site]
03971
hts_log
[function]
[call site]
03972
possibly_expand_bam_data
[function]
[call site]
03973
hts_log
[function]
[call site]
03974
sam_parse_Bc_vals
[function]
[call site]
03975
grow_B_array
[function]
[call site]
03976
__errno_location
[call site]
03977
possibly_expand_bam_data
[function]
[call site]
03978
hts_log
[function]
[call site]
03979
hts_str2int
[function]
[call site]
03980
sam_parse_BC_vals
[function]
[call site]
03981
grow_B_array
[function]
[call site]
03982
hts_str2uint
[function]
[call site]
03983
sam_parse_Bs_vals
[function]
[call site]
03984
grow_B_array
[function]
[call site]
03985
hts_str2int
[function]
[call site]
03986
i16_to_le
[function]
[call site]
03987
sam_parse_BS_vals
[function]
[call site]
03988
grow_B_array
[function]
[call site]
03989
hts_str2uint
[function]
[call site]
03990
u16_to_le
[function]
[call site]
03991
sam_parse_Bi_vals
[function]
[call site]
03992
grow_B_array
[function]
[call site]
03993
hts_str2int
[function]
[call site]
03994
i32_to_le
[function]
[call site]
03995
sam_parse_BI_vals
[function]
[call site]
03996
grow_B_array
[function]
[call site]
03997
hts_str2uint
[function]
[call site]
03998
u32_to_le
[function]
[call site]
03999
sam_parse_Bf_vals
[function]
[call site]
04000
grow_B_array
[function]
[call site]
04001
strtod
[call site]
04002
float_to_le
[function]
[call site]
04003
hts_log
[function]
[call site]
04004
i32_to_le
[function]
[call site]
04005
hts_str2int
[function]
[call site]
04006
sam_parse_B_vals_r
[function]
[call site]
04007
sam_parse_B_vals_r
[function]
[call site]
04008
sam_parse_B_vals_r
[function]
[call site]
04009
sam_parse_B_vals_r
[function]
[call site]
04010
sam_parse_B_vals_r
[function]
[call site]
04011
sam_parse_B_vals_r
[function]
[call site]
04012
hts_log
[function]
[call site]
04013
isspace_c
[function]
[call site]
04014
hts_strprint
[function]
[call site]
04015
hts_log
[function]
[call site]
04016
isspace_c
[function]
[call site]
04017
hts_log
[function]
[call site]
04018
bam_tag2cigar
[function]
[call site]
04019
sam_state_destroy
[function]
[call site]
04020
__errno_location
[call site]
04021
bgzf_seek
[function]
[call site]
04022
bgzf_seek_common
[function]
[call site]
04023
sam_hdr_fill_hrecs
[function]
[call site]
04024
pthread_create
[call site]
04025
sam_dispatcher_read
[function]
[call site]
04026
ks_resize
[function]
[call site]
04027
pthread_mutex_lock
[call site]
04028
pthread_cond_signal
[call site]
04029
pthread_mutex_unlock
[call site]
04030
hts_tpool_process_shutdown
[function]
[call site]
04031
pthread_mutex_unlock
[call site]
04032
pthread_mutex_lock
[call site]
04033
pthread_mutex_unlock
[call site]
04034
calloc
[call site]
04035
hts_malloc_ps
[function]
[call site]
04036
hts_realloc_ps
[function]
[call site]
04037
hts_add_sat2
[function]
[call site]
04038
hts_prod_sat2
[function]
[call site]
04039
hts_realloc
[function]
[call site]
04040
bgzf_read
[function]
[call site]
04041
hread
[function]
[call site]
04042
__errno_location
[call site]
04043
sam_state_err
[function]
[call site]
04044
hts_realloc_pse
[function]
[call site]
04045
hts_add_sat2
[function]
[call site]
04046
hts_prod_sat2
[function]
[call site]
04047
hts_add_sat2
[function]
[call site]
04048
hts_realloc
[function]
[call site]
04049
__assert_fail
[call site]
04050
__assert_fail
[call site]
04051
__assert_fail
[call site]
04052
ks_resize
[function]
[call site]
04053
hts_tpool_dispatch3
[function]
[call site]
04054
sam_parse_worker
[function]
[call site]
04055
pthread_mutex_lock
[call site]
04056
pthread_mutex_unlock
[call site]
04057
calloc
[call site]
04058
calloc
[call site]
04059
sam_state_err
[function]
[call site]
04060
sam_state_err
[function]
[call site]
04061
hts_realloc_p
[function]
[call site]
04062
sam_state_err
[function]
[call site]
04063
strchr
[call site]
04064
sam_parse1
[function]
[call site]
04065
__errno_location
[call site]
04066
sam_state_err
[function]
[call site]
04067
cleanup_sp_lines
[function]
[call site]
04068
__assert_fail
[call site]
04069
sam_free_sp_bams
[function]
[call site]
04070
pthread_mutex_lock
[call site]
04071
sam_free_sp_bams
[function]
[call site]
04072
cleanup_sp_lines
[function]
[call site]
04073
cleanup_sp_bams
[function]
[call site]
04074
sam_free_sp_bams
[function]
[call site]
04075
pthread_mutex_lock
[call site]
04076
pthread_mutex_unlock
[call site]
04077
pthread_mutex_unlock
[call site]
04078
hts_tpool_dispatch
[function]
[call site]
04079
sam_parse_eof
[function]
[call site]
04080
pthread_mutex_lock
[call site]
04081
pthread_cond_wait
[call site]
04082
pthread_cond_signal
[call site]
04083
pthread_mutex_unlock
[call site]
04084
hts_tpool_process_shutdown
[function]
[call site]
04085
pthread_mutex_unlock
[call site]
04086
pthread_mutex_lock
[call site]
04087
pthread_cond_signal
[call site]
04088
pthread_mutex_unlock
[call site]
04089
pthread_mutex_lock
[call site]
04090
pthread_mutex_unlock
[call site]
04091
__errno_location
[call site]
04092
sam_state_err
[function]
[call site]
04093
hts_tpool_process_shutdown
[function]
[call site]
04094
hts_log
[function]
[call site]
04095
__errno_location
[call site]
04096
pthread_mutex_lock
[call site]
04097
pthread_mutex_unlock
[call site]
04098
hts_tpool_next_result_wait
[function]
[call site]
04099
hts_tpool_result_data
[function]
[call site]
04100
hts_tpool_delete_result
[function]
[call site]
04101
pthread_mutex_lock
[call site]
04102
pthread_mutex_unlock
[call site]
04103
bam_copy1
[function]
[call site]
04104
pthread_mutex_lock
[call site]
04105
pthread_mutex_unlock
[call site]
04106
hts_getline
[function]
[call site]
04107
sam_parse1
[function]
[call site]
04108
hts_log
[function]
[call site]
04109
fastq_state_init
[function]
[call site]
04110
fastq_parse1
[function]
[call site]
04111
hts_getline
[function]
[call site]
04112
strpbrk
[call site]
04113
isspace_c
[function]
[call site]
04114
isspace_c
[function]
[call site]
04115
hts_getline
[function]
[call site]
04116
kputsn
[function]
[call site]
04117
hts_getline
[function]
[call site]
04118
kputsn
[function]
[call site]
04119
isdigit_c
[function]
[call site]
04120
regexec
[call site]
04121
hts_log
[function]
[call site]
04122
isalpha_c
[function]
[call site]
04123
bam_set1
[function]
[call site]
04124
bam_aux_append
[function]
[call site]
04125
__assert_fail
[call site]
04126
realloc_bam_data
[function]
[call site]
04127
__errno_location
[call site]
04128
isdigit_c
[function]
[call site]
04129
strtol
[call site]
04130
isdigit_c
[function]
[call site]
04131
isspace_c
[function]
[call site]
04132
bam_aux_append
[function]
[call site]
04133
aux_parse
[function]
[call site]
04134
__errno_location
[call site]
04135
__errno_location
[call site]
04136
sam_passes_filter
[function]
[call site]
04137
hts_filter_eval2
[function]
[call site]
04138
ks_free
[function]
[call site]
04139
hts_filter_eval_
[function]
[call site]
04140
expression
[function]
[call site]
04141
hts_log
[function]
[call site]
04142
hts_expr_val_undef
[function]
[call site]
04143
ks_clear
[function]
[call site]
04144
and_expr
[function]
[call site]
04145
eq_expr
[function]
[call site]
04146
cmp_expr
[function]
[call site]
04147
bitor_expr
[function]
[call site]
04148
bitxor_expr
[function]
[call site]
04149
bitand_expr
[function]
[call site]
04150
add_expr
[function]
[call site]
04151
mul_expr
[function]
[call site]
04152
unary_expr
[function]
[call site]
04153
ws
[function]
[call site]
04154
simple_expr
[function]
[call site]
04155
ws
[function]
[call site]
04156
expression
[function]
[call site]
04157
ws
[function]
[call site]
04158
fprintf
[call site]
04159
hts_str2dbl
[function]
[call site]
04160
ks_clear
[function]
[call site]
04164
kputsn
[function]
[call site]
04165
func_expr
[function]
[call site]
04166
strncmp
[call site]
04167
expression
[function]
[call site]
04168
expr_func_avg
[function]
[call site]
04169
strncmp
[call site]
04170
expression
[function]
[call site]
04171
ws
[function]
[call site]
04172
expression
[function]
[call site]
04173
hts_expr_val_free
[function]
[call site]
04174
ks_free
[function]
[call site]
04175
hts_expr_val_existsT
[function]
[call site]
04176
hts_expr_val_exists
[function]
[call site]
04177
hts_expr_val_free
[function]
[call site]
04178
strncmp
[call site]
04179
expression
[function]
[call site]
04180
hts_expr_val_existsT
[function]
[call site]
04181
strncmp
[call site]
04182
expression
[function]
[call site]
04183
exp
[call site]
04184
hts_expr_val_undef
[function]
[call site]
04185
strncmp
[call site]
04186
expression
[function]
[call site]
04187
expr_func_length
[function]
[call site]
04188
strncmp
[call site]
04189
expression
[function]
[call site]
04190
log
[call site]
04191
hts_expr_val_undef
[function]
[call site]
04192
strncmp
[call site]
04193
expression
[function]
[call site]
04194
expr_func_min
[function]
[call site]
04195
strncmp
[call site]
04196
expression
[function]
[call site]
04197
expr_func_max
[function]
[call site]
04198
strncmp
[call site]
04199
expression
[function]
[call site]
04200
ws
[function]
[call site]
04201
expression
[function]
[call site]
04202
hts_expr_val_free
[function]
[call site]
04203
hts_expr_val_exists
[function]
[call site]
04204
hts_expr_val_undef
[function]
[call site]
04205
hts_expr_val_free
[function]
[call site]
04206
hts_expr_val_free
[function]
[call site]
04207
pow
[call site]
04208
hts_expr_val_free
[function]
[call site]
04209
hts_expr_val_undef
[function]
[call site]
04210
strncmp
[call site]
04211
expression
[function]
[call site]
04212
sqrt
[call site]
04213
hts_expr_val_undef
[function]
[call site]
04214
ws
[function]
[call site]
04215
fprintf
[call site]
04216
hts_expr_val_exists
[function]
[call site]
04217
hts_expr_val_undef
[function]
[call site]
04218
unary_expr
[function]
[call site]
04219
hts_expr_val_exists
[function]
[call site]
04220
IS_VALID
[function]
[call site]
04221
hts_expr_val_undef
[function]
[call site]
04222
unary_expr
[function]
[call site]
04223
hts_expr_val_exists
[function]
[call site]
04224
hts_expr_val_undef
[function]
[call site]
04225
hts_expr_val_exists
[function]
[call site]
04226
hts_expr_val_undef
[function]
[call site]
04227
IS_VALID
[function]
[call site]
04228
hts_expr_val_undef
[function]
[call site]
04229
simple_expr
[function]
[call site]
04230
ws
[function]
[call site]
04231
unary_expr
[function]
[call site]
04232
hts_expr_val_free
[function]
[call site]
04233
hts_expr_val_exists
[function]
[call site]
04234
hts_expr_val_undef
[function]
[call site]
04235
hts_expr_val_free
[function]
[call site]
04236
IS_VALID
[function]
[call site]
04237
hts_expr_val_undef
[function]
[call site]
04238
hts_expr_val_exists
[function]
[call site]
04239
hts_expr_val_free
[function]
[call site]
04240
ws
[function]
[call site]
04241
mul_expr
[function]
[call site]
04242
hts_expr_val_free
[function]
[call site]
04243
hts_expr_val_exists
[function]
[call site]
04244
hts_expr_val_free
[function]
[call site]
04245
hts_expr_val_undef
[function]
[call site]
04246
hts_expr_val_free
[function]
[call site]
04247
ws
[function]
[call site]
04248
add_expr
[function]
[call site]
04249
hts_expr_val_free
[function]
[call site]
04250
hts_expr_val_exists
[function]
[call site]
04251
hts_expr_val_free
[function]
[call site]
04252
IS_VALID
[function]
[call site]
04253
hts_expr_val_undef
[function]
[call site]
04254
hts_expr_val_free
[function]
[call site]
04255
hts_expr_val_free
[function]
[call site]
04256
hts_expr_val_undef
[function]
[call site]
04257
ws
[function]
[call site]
04258
bitand_expr
[function]
[call site]
04259
hts_expr_val_free
[function]
[call site]
04260
hts_expr_val_exists
[function]
[call site]
04261
hts_expr_val_free
[function]
[call site]
04262
IS_VALID
[function]
[call site]
04263
hts_expr_val_undef
[function]
[call site]
04264
hts_expr_val_free
[function]
[call site]
04265
hts_expr_val_free
[function]
[call site]
04266
hts_expr_val_undef
[function]
[call site]
04267
ws
[function]
[call site]
04268
bitxor_expr
[function]
[call site]
04269
hts_expr_val_free
[function]
[call site]
04270
hts_expr_val_exists
[function]
[call site]
04271
hts_expr_val_free
[function]
[call site]
04272
IS_VALID
[function]
[call site]
04273
hts_expr_val_undef
[function]
[call site]
04274
hts_expr_val_free
[function]
[call site]
04275
hts_expr_val_free
[function]
[call site]
04276
hts_expr_val_undef
[function]
[call site]
04277
ws
[function]
[call site]
04278
cmp_expr
[function]
[call site]
04279
hts_expr_val_exists
[function]
[call site]
04280
hts_expr_val_undef
[function]
[call site]
04281
strcmp
[call site]
04282
cmp_expr
[function]
[call site]
04283
hts_expr_val_exists
[function]
[call site]
04284
hts_expr_val_undef
[function]
[call site]
04285
strcmp
[call site]
04286
cmp_expr
[function]
[call site]
04287
hts_expr_val_exists
[function]
[call site]
04288
hts_expr_val_undef
[function]
[call site]
04289
strcmp
[call site]
04290
cmp_expr
[function]
[call site]
04291
hts_expr_val_exists
[function]
[call site]
04292
hts_expr_val_undef
[function]
[call site]
04293
strcmp
[call site]
04294
hts_expr_val_exists
[function]
[call site]
04295
hts_expr_val_undef
[function]
[call site]
04296
hts_expr_val_free
[function]
[call site]
04297
ws
[function]
[call site]
04298
eq_expr
[function]
[call site]
04299
hts_expr_val_exists
[function]
[call site]
04300
hts_expr_val_undef
[function]
[call site]
04301
strcmp
[call site]
04302
eq_expr
[function]
[call site]
04303
hts_expr_val_exists
[function]
[call site]
04304
hts_expr_val_undef
[function]
[call site]
04305
strcmp
[call site]
04306
eq_expr
[function]
[call site]
04307
hts_expr_val_free
[function]
[call site]
04308
regcomp
[call site]
04309
regerror
[call site]
04310
fprintf
[call site]
04311
hts_expr_val_undef
[function]
[call site]
04312
hts_expr_val_free
[function]
[call site]
04313
regexec
[call site]
04314
regfree
[call site]
04315
hts_expr_val_exists
[function]
[call site]
04316
hts_expr_val_undef
[function]
[call site]
04317
hts_expr_val_free
[function]
[call site]
04318
ws
[function]
[call site]
04319
eq_expr
[function]
[call site]
04320
hts_expr_val_free
[function]
[call site]
04321
hts_expr_val_existsT
[function]
[call site]
04322
hts_expr_val_undef
[function]
[call site]
04323
eq_expr
[function]
[call site]
04324
hts_expr_val_free
[function]
[call site]
04325
hts_expr_val_existsT
[function]
[call site]
04326
hts_expr_val_undef
[function]
[call site]
04327
hts_expr_val_existsT
[function]
[call site]
04328
hts_expr_val_undef
[function]
[call site]
04329
hts_expr_val_existsT
[function]
[call site]
04330
hts_expr_val_undef
[function]
[call site]
04331
hts_expr_val_free
[function]
[call site]
04332
ws
[function]
[call site]
04333
fprintf
[call site]
04334
hts_expr_val_exists
[function]
[call site]
04335
bam_sym_lookup
[function]
[call site]
04336
memcmp
[call site]
04337
ks_clear
[function]
[call site]
04338
kputw
[function]
[call site]
04339
kputc_
[function]
[call site]
04340
kputs
[function]
[call site]
04341
kputs
[function]
[call site]
04342
memcmp
[call site]
04343
bam_endpos
[function]
[call site]
04344
memcmp
[call site]
04345
memcmp
[call site]
04346
memcmp
[call site]
04347
memcmp
[call site]
04348
memcmp
[call site]
04349
memcmp
[call site]
04350
memcmp
[call site]
04351
memcmp
[call site]
04352
memcmp
[call site]
04353
memcmp
[call site]
04354
memcmp
[call site]
04355
memcmp
[call site]
04356
memcmp
[call site]
04357
hts_log
[function]
[call site]
04358
memcmp
[call site]
04359
memcmp
[call site]
04360
bam_get_library
[function]
[call site]
04361
bam_aux_get
[function]
[call site]
04362
sam_hdr_find_tag_id
[function]
[call site]
04363
ks_clear
[function]
[call site]
04364
kputs
[function]
[call site]
04365
memcmp
[call site]
04366
memcmp
[call site]
04367
memcmp
[call site]
04368
sam_hdr_tid2name
[function]
[call site]
04369
ks_clear
[function]
[call site]
04370
kputs
[function]
[call site]
04371
memcmp
[call site]
04372
memcmp
[call site]
04373
memcmp
[call site]
04374
memcmp
[call site]
04375
memcmp
[call site]
04376
bam_cigar2qlen
[function]
[call site]
04377
memcmp
[call site]
04378
ks_clear
[function]
[call site]
04379
kputs
[function]
[call site]
04380
memcmp
[call site]
04381
ks_clear
[function]
[call site]
04382
ks_resize
[function]
[call site]
04383
memcmp
[call site]
04384
bam_cigar2rlen
[function]
[call site]
04385
memcmp
[call site]
04386
sam_hdr_tid2name
[function]
[call site]
04387
ks_clear
[function]
[call site]
04388
kputs
[function]
[call site]
04389
memcmp
[call site]
04390
sam_hdr_tid2name
[function]
[call site]
04391
ks_clear
[function]
[call site]
04392
kputs
[function]
[call site]
04393
memcmp
[call site]
04394
memcmp
[call site]
04395
ks_clear
[function]
[call site]
04396
ks_resize
[function]
[call site]
04397
nibble2base
[function]
[call site]
04398
memcmp
[call site]
04399
memcmp
[call site]
04400
bam_aux_get
[function]
[call site]
04401
ks_clear
[function]
[call site]
04402
kputs
[function]
[call site]
04403
ks_clear
[function]
[call site]
04404
kputsn
[function]
[call site]
04405
bam_aux2i
[function]
[call site]
04406
get_int_aux_val
[function]
[call site]
04407
le_to_i8
[function]
[call site]
04408
le_to_i16
[function]
[call site]
04409
le_to_u16
[function]
[call site]
04410
le_to_i32
[function]
[call site]
04411
le_to_u32
[function]
[call site]
04412
__errno_location
[call site]
04413
bam_aux2f
[function]
[call site]
04414
le_to_double
[function]
[call site]
04415
le_to_float
[function]
[call site]
04416
get_int_aux_val
[function]
[call site]
04417
hts_log
[function]
[call site]
04418
hts_log
[function]
[call site]
04419
hts_expr_val_free
[function]
[call site]
04420
hts_expr_val_free
[function]
[call site]
04421
sam_write1
[function]
[call site]
04422
bam_write_idx1
[function]
[call site]
04423
bam_write1
[function]
[call site]
04424
__errno_location
[call site]
04425
hts_log
[function]
[call site]
04426
bgzf_flush_try
[function]
[call site]
04427
lazy_flush
[function]
[call site]
04428
ed_swap_4p
[function]
[call site]
04429
ed_swap_4p
[function]
[call site]
04430
bgzf_write_small
[function]
[call site]
04431
bgzf_write
[function]
[call site]
04432
swap_data
[function]
[call site]
04433
bgzf_write_small
[function]
[call site]
04434
bgzf_write_small
[function]
[call site]
04435
bgzf_write_small
[function]
[call site]
04436
bgzf_write_small
[function]
[call site]
04437
bam_cigar2rlen
[function]
[call site]
04438
hts_log
[function]
[call site]
04439
u32_to_le
[function]
[call site]
04440
u32_to_le
[function]
[call site]
04441
bgzf_write_small
[function]
[call site]
04442
bgzf_write_small
[function]
[call site]
04443
bgzf_write_small
[function]
[call site]
04444
u32_to_le
[function]
[call site]
04445
bgzf_write_small
[function]
[call site]
04446
bgzf_write_small
[function]
[call site]
04447
swap_data
[function]
[call site]
04448
bgzf_flush_try
[function]
[call site]
04449
hts_idx_amend_last
[function]
[call site]
04450
bam_write1
[function]
[call site]
04451
bam_endpos
[function]
[call site]
04452
bgzf_idx_push
[function]
[call site]
04453
hts_idx_push
[function]
[call site]
04454
hts_idx_check_range
[function]
[call site]
04455
hts_idx_maxpos
[function]
[call site]
04456
hts_bin_maxpos
[function]
[call site]
04457
hts_log
[function]
[call site]
04458
idx_format_name
[function]
[call site]
04459
hts_log
[function]
[call site]
04460
__errno_location
[call site]
04461
hts_realloc_p
[function]
[call site]
04462
hts_realloc_p
[function]
[call site]
04463
hts_log
[function]
[call site]
04464
hts_log
[function]
[call site]
04465
hts_log
[function]
[call site]
04466
hts_log
[function]
[call site]
04467
kh_init_bin
[function]
[call site]
04468
calloc
[call site]
04469
insert_to_l
[function]
[call site]
04470
hts_realloc_p
[function]
[call site]
04471
hts_reg2bin
[function]
[call site]
04472
insert_to_b
[function]
[call site]
04473
kh_put_bin
[function]
[call site]
04474
kh_resize_bin
[function]
[call site]
04475
__errno_location
[call site]
04476
realloc
[call site]
04477
calloc
[call site]
04478
kh_del_bin
[function]
[call site]
04479
hts_realloc_p
[function]
[call site]
04480
insert_to_b
[function]
[call site]
04481
insert_to_b
[function]
[call site]
04482
hts_idx_check_range
[function]
[call site]
04483
pthread_mutex_lock
[call site]
04484
hts_realloc_p
[function]
[call site]
04485
pthread_mutex_unlock
[call site]
04486
pthread_mutex_unlock
[call site]
04487
sam_hdr_tid2name
[function]
[call site]
04488
sam_hdr_tid2len
[function]
[call site]
04489
kh_get_s2i
[function]
[call site]
04490
hts_log
[function]
[call site]
04491
cram_put_bam_seq
[function]
[call site]
04492
cram_new_container
[function]
[call site]
04493
pthread_mutex_lock
[call site]
04494
pthread_mutex_unlock
[call site]
04495
hts_log
[function]
[call site]
04496
pthread_mutex_lock
[call site]
04497
hts_log
[function]
[call site]
04498
pthread_mutex_unlock
[call site]
04499
cram_next_container
[function]
[call site]
04500
cram_update_curr_slice
[function]
[call site]
04501
hts_log
[function]
[call site]
04502
cram_flush_container_mt
[function]
[call site]
04503
cram_free_slice
[function]
[call site]
04504
cram_free_container
[function]
[call site]
04505
cram_new_container
[function]
[call site]
04506
pthread_mutex_lock
[call site]
04507
pthread_mutex_unlock
[call site]
04508
cram_new_slice
[function]
[call site]
04509
calloc
[call site]
04510
calloc
[call site]
04511
hts_malloc_p
[function]
[call site]
04512
hts_malloc_p
[function]
[call site]
04513
cram_new_block
[function]
[call site]
04514
cram_new_block
[function]
[call site]
04515
cram_new_block
[function]
[call site]
04516
cram_new_block
[function]
[call site]
04517
cram_new_block
[function]
[call site]
04518
cram_new_block
[function]
[call site]
04519
string_pool_create
[function]
[call site]
04520
kh_init_m_s2i
[function]
[call site]
04521
kh_init_m_s2i
[function]
[call site]
04522
cram_free_slice
[function]
[call site]
04523
pthread_mutex_lock
[call site]
04524
hts_log
[function]
[call site]
04525
pthread_mutex_unlock
[call site]
04526
pthread_mutex_lock
[call site]
04527
pthread_mutex_unlock
[call site]
04528
pthread_mutex_lock
[call site]
04529
calloc
[call site]
04530
pthread_mutex_unlock
[call site]
04531
pthread_mutex_lock
[call site]
04532
pthread_mutex_unlock
[call site]
04533
pthread_mutex_lock
[call site]
04534
hts_realloc_p
[function]
[call site]
04535
pthread_mutex_unlock
[call site]
04536
bam_set_mempolicy
[function]
[call site]
04537
calloc
[call site]
04538
pthread_mutex_unlock
[call site]
04539
bam_set_mempolicy
[function]
[call site]
04540
pthread_mutex_unlock
[call site]
04541
bam_copy1
[function]
[call site]
04542
bam_cigar2qlen
[function]
[call site]
04543
hts_log
[function]
[call site]
04544
pthread_create
[call site]
04545
sam_dispatcher_write
[function]
[call site]
04546
hts_tpool_next_result_wait
[function]
[call site]
04547
hts_tpool_result_data
[function]
[call site]
04548
sam_state_err
[function]
[call site]
04549
bgzf_flush_try
[function]
[call site]
04550
bgzf_write
[function]
[call site]
04551
hwrite
[function]
[call site]
04552
bam_endpos
[function]
[call site]
04553
bgzf_idx_push
[function]
[call site]
04554
__errno_location
[call site]
04555
sam_state_err
[function]
[call site]
04556
sam_hdr_tid2name
[function]
[call site]
04557
sam_hdr_tid2len
[function]
[call site]
04558
hts_log
[function]
[call site]
04559
bam_endpos
[function]
[call site]
04560
hts_idx_push
[function]
[call site]
04561
__errno_location
[call site]
04562
sam_state_err
[function]
[call site]
04563
sam_hdr_tid2name
[function]
[call site]
04564
sam_hdr_tid2len
[function]
[call site]
04565
hts_log
[function]
[call site]
04566
__assert_fail
[call site]
04567
pthread_mutex_lock
[call site]
04568
pthread_mutex_unlock
[call site]
04569
bgzf_write
[function]
[call site]
04570
bgzf_flush_try
[function]
[call site]
04571
bgzf_write
[function]
[call site]
04572
hwrite
[function]
[call site]
04573
hts_tpool_delete_result
[function]
[call site]
04574
pthread_mutex_lock
[call site]
04575
pthread_mutex_unlock
[call site]
04576
sam_state_err
[function]
[call site]
04577
hts_tpool_process_shutdown
[function]
[call site]
04578
__errno_location
[call site]
04579
sam_state_err
[function]
[call site]
04580
hts_log
[function]
[call site]
04581
pthread_mutex_lock
[call site]
04582
pthread_mutex_unlock
[call site]
04583
pthread_mutex_unlock
[call site]
04584
calloc
[call site]
04585
calloc
[call site]
04586
bam_copy1
[function]
[call site]
04587
pthread_mutex_lock
[call site]
04588
pthread_mutex_unlock
[call site]
04589
hts_tpool_dispatch3
[function]
[call site]
04590
sam_format_worker
[function]
[call site]
04591
cleanup_sp_bams
[function]
[call site]
04592
cleanup_sp_lines
[function]
[call site]
04593
pthread_mutex_unlock
[call site]
04594
pthread_mutex_unlock
[call site]
04595
sam_format1
[function]
[call site]
04596
sam_format1_append
[function]
[call site]
04597
kputc
[function]
[call site]
04598
bgzf_flush_try
[function]
[call site]
04599
bgzf_write
[function]
[call site]
04600
hwrite
[function]
[call site]
04601
bam_endpos
[function]
[call site]
04602
bgzf_idx_push
[function]
[call site]
04603
sam_hdr_tid2name
[function]
[call site]
04604
sam_hdr_tid2len
[function]
[call site]
04605
hts_log
[function]
[call site]
04606
bam_endpos
[function]
[call site]
04607
hts_idx_push
[function]
[call site]
04608
sam_hdr_tid2name
[function]
[call site]
04609
sam_hdr_tid2len
[function]
[call site]
04610
hts_log
[function]
[call site]
04611
fastq_state_init
[function]
[call site]
04612
fastq_format1
[function]
[call site]
04613
kputc
[function]
[call site]
04614
kputs
[function]
[call site]
04615
bam_aux_get
[function]
[call site]
04616
kputc
[function]
[call site]
04617
isalpha_c
[function]
[call site]
04618
toupper_c
[function]
[call site]
04619
kputc
[function]
[call site]
04620
kputs
[function]
[call site]
04621
kputs
[function]
[call site]
04622
kputs
[function]
[call site]
04623
bam_aux_get
[function]
[call site]
04624
ksprintf
[function]
[call site]
04625
isupper_c
[function]
[call site]
04626
__ctype_b_loc
[call site]
04627
islower_c
[function]
[call site]
04628
__ctype_b_loc
[call site]
04629
hts_log
[function]
[call site]
04630
strlen
[call site]
04631
strlen
[call site]
04632
isalpha_c
[function]
[call site]
04633
islower_c
[function]
[call site]
04634
toupper_c
[function]
[call site]
04635
kh_get_tag
[function]
[call site]
04636
kputc_
[function]
[call site]
04637
sam_format_aux1
[function]
[call site]
04638
skip_aux
[function]
[call site]
04639
kputsn
[function]
[call site]
04640
ks_resize
[function]
[call site]
04641
kputc_
[function]
[call site]
04642
kputc_
[function]
[call site]
04643
kputc_
[function]
[call site]
04644
kputsn
[function]
[call site]
04645
kputc_
[function]
[call site]
04646
kputc_
[function]
[call site]
04647
kputc_
[function]
[call site]
04648
kputc
[function]
[call site]
04649
bgzf_flush_try
[function]
[call site]
04650
bgzf_write
[function]
[call site]
04651
hwrite
[function]
[call site]
04652
__errno_location
[call site]
04653
bam_destroy1
[function]
[call site]
04654
sam_hdr_destroy
[function]
[call site]
04655
hts_close_or_abort
[function]
[call site]
04656
hts_close
[function]
[call site]
04657
hts_close
[function]
[call site]
04658
view_sam
[function]
[call site]
04659
view_sam
[function]
[call site]
04660
view_vcf
[function]
[call site]
04661
abort
[call site]
04662
hopen
[function]
[call site]
04663
hts_hopen
[function]
[call site]
04664
hclose
[function]
[call site]
04665
abort
[call site]
04666
hts_open
[function]
[call site]
04667
abort
[call site]
04668
bcf_hdr_read
[function]
[call site]
04669
vcf_hdr_read
[function]
[call site]
04670
bcf_hdr_init
[function]
[call site]
04671
calloc
[call site]
04672
kh_init_vdict
[function]
[call site]
04673
calloc
[call site]
04674
kh_resize_vdict
[function]
[call site]
04675
__errno_location
[call site]
04676
realloc
[call site]
04677
__ac_FNV1a_hash_string
[function]
[call site]
04678
calloc
[call site]
04679
kh_init_hdict
[function]
[call site]
04680
strchr
[call site]
04681
bcf_hdr_append
[function]
[call site]
04682
bcf_hdr_parse_line
[function]
[call site]
04683
calloc
[call site]
04684
hts_malloc_ps
[function]
[call site]
04685
hts_malloc_p
[function]
[call site]
04686
isalpha_c
[function]
[call site]
04687
isalnum_c
[function]
[call site]
04688
bcf_hrec_add_key
[function]
[call site]
04689
__assert_fail
[call site]
04690
hts_realloc_p
[function]
[call site]
04691
hts_realloc_p
[function]
[call site]
04692
hts_malloc_ps
[function]
[call site]
04693
is_escaped
[function]
[call site]
04694
bcf_hrec_set_val
[function]
[call site]
04695
__errno_location
[call site]
04696
hts_malloc_ps
[function]
[call site]
04697
__errno_location
[call site]
04698
hts_malloc_ps
[function]
[call site]
04699
isspace_c
[function]
[call site]
04700
hts_strprint
[function]
[call site]
04701
hts_log
[function]
[call site]
04702
bcf_hrec_destroy
[function]
[call site]
04703
hts_strprint
[function]
[call site]
04704
hts_log
[function]
[call site]
04705
bcf_hrec_destroy
[function]
[call site]
04706
bcf_hdr_add_hrec
[function]
[call site]
04707
get_hdr_aux
[function]
[call site]
04708
bcf_hrec_check
[function]
[call site]
04709
bcf_hrec_set_type
[function]
[call site]
04710
strcmp
[call site]
04711
strcmp
[call site]
04712
strcmp
[call site]
04713
strcmp
[call site]
04714
bcf_hrec_find_key
[function]
[call site]
04715
strcasecmp
[call site]
04716
bcf_hrec_find_key
[function]
[call site]
04717
strcmp
[call site]
04718
bcf_hrec_find_key
[function]
[call site]
04719
hts_log
[function]
[call site]
04720
hts_log
[function]
[call site]
04721
hts_log
[function]
[call site]
04722
bcf_hdr_register_hrec
[function]
[call site]
04723
bcf_hrec_set_type
[function]
[call site]
04724
bcf_hdr_register_hrec_ctg
[function]
[call site]
04725
bcf_hrec_find_key
[function]
[call site]
04726
bcf_hrec_find_key
[function]
[call site]
04727
strtoll
[call site]
04728
hts_log
[function]
[call site]
04729
strdup
[call site]
04730
kh_get_vdict
[function]
[call site]
04731
strcmp
[call site]
04732
kh_put_vdict
[function]
[call site]
04733
kh_resize_vdict
[function]
[call site]
04734
bcf_hrec_find_key
[function]
[call site]
04735
strtol
[call site]
04736
kh_del_vdict
[function]
[call site]
04737
hts_log
[function]
[call site]
04738
bcf_hdr_set_idx
[function]
[call site]
04739
hts_log
[function]
[call site]
04740
__errno_location
[call site]
04741
hts_resize_array_
[function]
[call site]
04742
hts_log
[function]
[call site]
04743
__errno_location
[call site]
04744
realloc
[call site]
04745
__errno_location
[call site]
04746
__errno_location
[call site]
04747
strerror
[call site]
04748
hts_log
[function]
[call site]
04749
__errno_location
[call site]
04750
abort
[call site]
04751
abort
[call site]
04752
kh_del_vdict
[function]
[call site]
04753
hrec_add_idx
[function]
[call site]
04754
hts_realloc_p
[function]
[call site]
04755
hts_realloc_p
[function]
[call site]
04756
strdup
[call site]
04757
kputw
[function]
[call site]
04758
bcf_hdr_register_hrec_info
[function]
[call site]
04759
strcmp
[call site]
04760
strcmp
[call site]
04761
strtol
[call site]
04762
strcmp
[call site]
04763
strcmp
[call site]
04764
strcmp
[call site]
04765
strcmp
[call site]
04766
strcmp
[call site]
04767
strcmp
[call site]
04768
hts_log
[function]
[call site]
04769
strcmp
[call site]
04770
strcmp
[call site]
04771
strcmp
[call site]
04772
strcmp
[call site]
04773
strcmp
[call site]
04774
strcmp
[call site]
04775
strcmp
[call site]
04776
strcmp
[call site]
04777
strcmp
[call site]
04778
strcmp
[call site]
04779
__isoc99_sscanf
[call site]
04780
hts_log
[function]
[call site]
04781
hts_log
[function]
[call site]
04782
hts_log
[function]
[call site]
04783
strdup
[call site]
04784
kh_get_vdict
[function]
[call site]
04785
strcmp
[call site]
04786
hrec_add_idx
[function]
[call site]
04787
hrec_add_idx
[function]
[call site]
04788
kh_put_vdict
[function]
[call site]
04789
bcf_hdr_set_idx
[function]
[call site]
04790
kh_del_vdict
[function]
[call site]
04791
hrec_add_idx
[function]
[call site]
04792
bcf_hrec_destroy
[function]
[call site]
04793
ksprintf
[function]
[call site]
04794
kh_get_hdict
[function]
[call site]
04795
bcf_hrec_destroy
[function]
[call site]
04796
bcf_get_version
[function]
[call site]
04797
get_hdr_aux
[function]
[call site]
04798
bcf_hdr_get_version
[function]
[call site]
04799
bcf_hdr_get_hrec
[function]
[call site]
04800
ksprintf
[function]
[call site]
04801
get_hdr_aux
[function]
[call site]
04802
kh_get_hdict
[function]
[call site]
04803
strcmp
[call site]
04804
strcmp
[call site]
04805
ksprintf
[function]
[call site]
04806
get_hdr_aux
[function]
[call site]
04807
kh_get_hdict
[function]
[call site]
04808
strcmp
[call site]
04809
bcf_hrec_find_key
[function]
[call site]
04810
strcmp
[call site]
04811
kh_get_vdict
[function]
[call site]
04812
hts_log
[function]
[call site]
04813
strstr
[call site]
04814
strchr
[call site]
04815
strtol
[call site]
04816
__errno_location
[call site]
04817
__errno_location
[call site]
04818
strtol
[call site]
04819
__errno_location
[call site]
04820
hts_log
[function]
[call site]
04821
bcf_hrec_find_key
[function]
[call site]
04822
ksprintf
[function]
[call site]
04823
kh_get_hdict
[function]
[call site]
04824
bcf_hrec_destroy
[function]
[call site]
04825
hts_realloc_p
[function]
[call site]
04826
bcf_hdr_unregister_hrec
[function]
[call site]
04827
bcf_hrec_find_key
[function]
[call site]
04828
kh_get_vdict
[function]
[call site]
04829
kh_put_hdict
[function]
[call site]
04830
kh_resize_hdict
[function]
[call site]
04831
bcf_hdr_append
[function]
[call site]
04832
kh_destroy_vdict
[function]
[call site]
04833
hts_log
[function]
[call site]
04834
hts_getline
[function]
[call site]
04835
hts_log
[function]
[call site]
04836
hopen
[function]
[call site]
04837
hts_log
[function]
[call site]
04838
khgetline
[function]
[call site]
04839
strchr
[call site]
04840
kputs
[function]
[call site]
04841
kputsn
[function]
[call site]
04842
kputs
[function]
[call site]
04843
atol
[call site]
04844
kputl
[function]
[call site]
04845
kputll
[function]
[call site]
04846
kputsn
[function]
[call site]
04847
hclose
[function]
[call site]
04848
hts_log
[function]
[call site]
04849
kputsn
[function]
[call site]
04850
kputc
[function]
[call site]
04851
hts_log
[function]
[call site]
04852
bcf_hdr_parse
[function]
[call site]
04853
bcf_hdr_parse_line
[function]
[call site]
04854
strcasecmp
[call site]
04855
hts_log
[function]
[call site]
04856
bcf_hdr_add_hrec
[function]
[call site]
04857
bcf_hrec_destroy
[function]
[call site]
04858
bcf_hdr_parse_line
[function]
[call site]
04859
bcf_hdr_add_hrec
[function]
[call site]
04860
bcf_hrec_destroy
[function]
[call site]
04861
bcf_hdr_parse_line
[function]
[call site]
04862
bcf_hdr_add_hrec
[function]
[call site]
04863
bcf_hrec_destroy
[function]
[call site]
04864
__assert_fail
[call site]
04865
strerror
[call site]
04866
hts_log
[function]
[call site]
04867
strncmp
[call site]
04868
strchr
[call site]
04869
hts_strprint
[function]
[call site]
04870
hts_log
[function]
[call site]
04871
hts_log
[function]
[call site]
04872
bcf_hdr_parse_sample_line
[function]
[call site]
04873
strlen
[call site]
04874
strncmp
[call site]
04875
hts_log
[function]
[call site]
04876
strlen
[call site]
04877
strncmp
[call site]
04878
hts_log
[function]
[call site]
04879
bcf_hdr_add_sample_len
[function]
[call site]
04880
isspace_c
[function]
[call site]
04881
hts_realloc_ps
[function]
[call site]
04882
kh_put_vdict
[function]
[call site]
04883
hts_log
[function]
[call site]
04884
bcf_hdr_sync
[function]
[call site]
04885
hts_realloc_p
[function]
[call site]
04886
get_hdr_aux
[function]
[call site]
04887
bcf_hdr_check_sanity
[function]
[call site]
04888
bcf_get_version
[function]
[call site]
04889
bcf_hdr_id2int
[function]
[call site]
04890
kh_get_vdict
[function]
[call site]
04891
atoi
[call site]
04892
hts_log
[function]
[call site]
04893
hts_log
[function]
[call site]
04894
bcf_hdr_id2int
[function]
[call site]
04895
atoi
[call site]
04896
hts_log
[function]
[call site]
04897
hts_log
[function]
[call site]
04898
tbx_index_load3
[function]
[call site]
04899
index_load
[function]
[call site]
04900
calloc
[call site]
04901
hts_idx_load3
[function]
[call site]
04902
idx_find_and_load
[function]
[call site]
04903
strstr
[call site]
04904
strdup
[call site]
04905
__errno_location
[call site]
04906
strerror
[call site]
04907
hts_log
[function]
[call site]
04908
hts_idx_load3
[function]
[call site]
04909
hisremote
[function]
[call site]
04910
stat
[call site]
04911
hts_log
[function]
[call site]
04912
idx_test_and_fetch
[function]
[call site]
04913
hisremote
[function]
[call site]
04914
strncmp
[call site]
04915
strcspn
[call site]
04916
kputsn
[function]
[call site]
04917
access
[call site]
04918
hopen
[function]
[call site]
04919
hts_log
[function]
[call site]
04920
hts_detect_format2
[function]
[call site]
04921
hts_log
[function]
[call site]
04922
hts_log
[function]
[call site]
04923
hts_open_tmpfile
[function]
[call site]
04924
hts_log
[function]
[call site]
04925
hts_log
[function]
[call site]
04926
calloc
[call site]
04927
__errno_location
[call site]
04928
strerror
[call site]
04929
hts_log
[function]
[call site]
04930
hread
[function]
[call site]
04931
hwrite
[function]
[call site]
04932
__errno_location
[call site]
04933
strerror
[call site]
04934
hts_log
[function]
[call site]
04935
hts_log
[function]
[call site]
04936
hclose
[function]
[call site]
04937
__errno_location
[call site]
04938
strerror
[call site]
04939
hts_log
[function]
[call site]
04940
rename
[call site]
04941
__errno_location
[call site]
04942
strerror
[call site]
04943
hts_log
[function]
[call site]
04944
ks_clear
[function]
[call site]
04945
hclose
[function]
[call site]
04946
hts_log
[function]
[call site]
04947
hopen
[function]
[call site]
04948
hclose_abruptly
[function]
[call site]
04949
strlen
[call site]
04950
__errno_location
[call site]
04951
hclose_abruptly
[function]
[call site]
04952
hclose_abruptly
[function]
[call site]
04953
unlink
[call site]
04954
__errno_location
[call site]
04955
strdup
[call site]
04956
idx_read
[function]
[call site]
04957
bgzf_open
[function]
[call site]
04958
ed_is_big
[function]
[call site]
04959
bgzf_read
[function]
[call site]
04960
memcmp
[call site]
04961
bgzf_read
[function]
[call site]
04962
ed_swap_4p
[function]
[call site]
04963
hts_malloc_ps
[function]
[call site]
04964
bgzf_read
[function]
[call site]
04965
bgzf_read
[function]
[call site]
04966
ed_swap_4p
[function]
[call site]
04967
hts_idx_init
[function]
[call site]
04968
idx_read_core
[function]
[call site]
04972
ed_is_big
[function]
[call site]
04973
kh_init_bin
[function]
[call site]
04974
bgzf_read
[function]
[call site]
04975
ed_swap_4p
[function]
[call site]
04976
bgzf_read
[function]
[call site]
04977
ed_swap_4p
[function]
[call site]
04978
kh_put_bin
[function]
[call site]
04979
bgzf_read
[function]
[call site]
04980
ed_swap_8p
[function]
[call site]
04981
bgzf_read
[function]
[call site]
04982
ed_swap_4p
[function]
[call site]
04983
hts_malloc_p
[function]
[call site]
04984
bgzf_read
[function]
[call site]
04985
swap_bins
[function]
[call site]
04986
ed_swap_8p
[function]
[call site]
04987
ed_swap_8p
[function]
[call site]
04988
bgzf_read
[function]
[call site]
04989
ed_swap_4p
[function]
[call site]
04990
hts_malloc_p
[function]
[call site]
04991
bgzf_read
[function]
[call site]
04992
ed_swap_8p
[function]
[call site]
04993
update_loff
[function]
[call site]
04994
hts_bin_bot
[function]
[call site]
04995
hts_bin_level
[function]
[call site]
04996
bgzf_read
[function]
[call site]
04997
ed_swap_8p
[function]
[call site]
04998
memcmp
[call site]
04999
bgzf_read
[function]
[call site]
05000
le_to_u32
[function]
[call site]
05001
hts_idx_init
[function]
[call site]
05002
le_to_u32
[function]
[call site]
05003
hts_malloc_ps
[function]
[call site]
05004
bgzf_read
[function]
[call site]
05005
idx_read_core
[function]
[call site]
05006
memcmp
[call site]
05007
bgzf_read
[function]
[call site]
05008
ed_swap_4p
[function]
[call site]
05009
hts_idx_init
[function]
[call site]
05010
idx_read_core
[function]
[call site]
05011
__errno_location
[call site]
05012
bgzf_close
[function]
[call site]
05013
bgzf_close
[function]
[call site]
05014
hts_idx_destroy
[function]
[call site]
05015
__errno_location
[call site]
05016
strerror
[call site]
05017
hts_log
[function]
[call site]
05018
hts_idx_check_local
[function]
[call site]
05019
hisremote
[function]
[call site]
05020
strlen
[call site]
05021
strncmp
[call site]
05022
strncmp
[call site]
05023
hts_log
[function]
[call site]
05024
strlen
[call site]
05025
calloc
[call site]
05026
strcpy
[call site]
05027
stat
[call site]
05028
strcpy
[call site]
05029
stat
[call site]
05030
strcpy
[call site]
05031
stat
[call site]
05032
strcpy
[call site]
05033
stat
[call site]
05034
strcpy
[call site]
05035
stat
[call site]
05036
strcpy
[call site]
05037
stat
[call site]
05038
strcpy
[call site]
05039
stat
[call site]
05040
strcpy
[call site]
05041
stat
[call site]
05042
strcpy
[call site]
05043
strcmp
[call site]
05044
strcmp
[call site]
05045
strcpy
[call site]
05046
stat
[call site]
05047
strcpy
[call site]
05048
stat
[call site]
05049
hisremote
[function]
[call site]
05050
idx_filename
[function]
[call site]
05051
haddextension
[function]
[call site]
05052
find_scheme_handler
[function]
[call site]
05053
strncmp
[call site]
05054
strcspn
[call site]
05055
strchr
[call site]
05056
strip_extension
[function]
[call site]
05057
kputsn
[function]
[call site]
05058
kputs
[function]
[call site]
05059
kputs
[function]
[call site]
05060
idx_test_and_fetch
[function]
[call site]
05061
haddextension
[function]
[call site]
05062
idx_test_and_fetch
[function]
[call site]
05063
idx_filename
[function]
[call site]
05064
idx_filename
[function]
[call site]
05065
idx_filename
[function]
[call site]
05066
idx_filename
[function]
[call site]
05067
idx_filename
[function]
[call site]
05068
hts_log
[function]
[call site]
05069
hts_idx_load3
[function]
[call site]
05070
idx_read
[function]
[call site]
05071
hts_idx_get_meta
[function]
[call site]
05072
le_to_i32
[function]
[call site]
05073
le_to_i32
[function]
[call site]
05074
le_to_i32
[function]
[call site]
05075
le_to_i32
[function]
[call site]
05076
le_to_i32
[function]
[call site]
05077
le_to_i32
[function]
[call site]
05078
le_to_u32
[function]
[call site]
05079
get_tid
[function]
[call site]
05080
kh_init_s2i
[function]
[call site]
05081
kh_put_s2i
[function]
[call site]
05082
strdup
[call site]
05083
kh_del_s2i
[function]
[call site]
05084
kh_get_s2i
[function]
[call site]
05085
__errno_location
[call site]
05086
strerror
[call site]
05087
hts_log
[function]
[call site]
05088
strlen
[call site]
05089
hts_log
[function]
[call site]
05090
tbx_destroy
[function]
[call site]
05091
hts_idx_destroy
[function]
[call site]
05092
kh_destroy_s2i
[function]
[call site]
05093
tbx_seqnames
[function]
[call site]
05094
calloc
[call site]
05095
calloc
[call site]
05096
__assert_fail
[call site]
05097
__assert_fail
[call site]
05098
bcf_hdr_get_hrec
[function]
[call site]
05099
add_missing_contig_hrec
[function]
[call site]
05100
calloc
[call site]
05101
strdup
[call site]
05102
bcf_hrec_add_key
[function]
[call site]
05103
strlen
[call site]
05104
bcf_hrec_set_val
[function]
[call site]
05105
bcf_hdr_add_hrec
[function]
[call site]
05106
__errno_location
[call site]
05107
__errno_location
[call site]
05108
strerror
[call site]
05109
hts_log
[function]
[call site]
05110
bcf_hrec_destroy
[function]
[call site]
05111
__errno_location
[call site]
05112
bcf_hdr_sync
[function]
[call site]
05113
tbx_destroy
[function]
[call site]
05114
tbx_destroy
[function]
[call site]
05115
bcf_hdr_destroy
[function]
[call site]
05116
get_hdr_aux
[function]
[call site]
05117
kh_destroy_hdict
[function]
[call site]
05118
kh_destroy_vdict
[function]
[call site]
05119
bcf_hrec_destroy
[function]
[call site]
05120
hts_log
[function]
[call site]
05121
__assert_fail
[call site]
05122
bcf_hdr_init
[function]
[call site]
05123
bgzf_read
[function]
[call site]
05124
hts_log
[function]
[call site]
05125
bcf_hdr_destroy
[function]
[call site]
05126
strncmp
[call site]
05127
strncmp
[call site]
05128
hts_log
[function]
[call site]
05129
hts_log
[function]
[call site]
05130
bcf_hdr_destroy
[function]
[call site]
05131
bgzf_read
[function]
[call site]
05132
__errno_location
[call site]
05133
__errno_location
[call site]
05134
bgzf_read
[function]
[call site]
05135
bcf_hdr_parse
[function]
[call site]
05136
bcf_hdr_incr_ref
[function]
[call site]
05137
get_hdr_aux
[function]
[call site]
05138
bgzf_set_private_data
[function]
[call site]
05139
__assert_fail
[call site]
05140
hdr_bgzf_private_data_cleanup
[function]
[call site]
05141
bcf_hdr_decr_ref
[function]
[call site]
05142
get_hdr_aux
[function]
[call site]
05143
bcf_hdr_destroy
[function]
[call site]
05144
hts_log
[function]
[call site]
05145
bcf_hdr_destroy
[function]
[call site]
05146
hts_close_or_abort
[function]
[call site]
05147
hts_close
[function]
[call site]
05148
bcf_hdr_write
[function]
[call site]
05149
__errno_location
[call site]
05150
bcf_hdr_sync
[function]
[call site]
05151
vcf_hdr_write
[function]
[call site]
05152
bcf_hdr_format
[function]
[call site]
05153
_bcf_hrec_format
[function]
[call site]
05154
ksprintf
[function]
[call site]
05155
strcmp
[call site]
05156
kputc
[function]
[call site]
05157
ksprintf
[function]
[call site]
05158
ksprintf
[function]
[call site]
05159
ksprintf
[function]
[call site]
05160
ksprintf
[function]
[call site]
05161
ksprintf
[function]
[call site]
05162
ksprintf
[function]
[call site]
05163
ksprintf
[function]
[call site]
05164
bgzf_write
[function]
[call site]
05165
bgzf_flush
[function]
[call site]
05166
hwrite
[function]
[call site]
05167
bcf_hdr_format
[function]
[call site]
05168
kputc
[function]
[call site]
05169
bgzf_write
[function]
[call site]
05170
u32_to_le
[function]
[call site]
05171
bgzf_write
[function]
[call site]
05172
bgzf_write
[function]
[call site]
05173
bgzf_flush
[function]
[call site]
05174
bcf_hdr_incr_ref
[function]
[call site]
05175
bgzf_set_private_data
[function]
[call site]
05176
hdr_bgzf_private_data_cleanup
[function]
[call site]
05177
bcf_init
[function]
[call site]
05178
calloc
[call site]
05179
bcf_read
[function]
[call site]
05180
vcf_read
[function]
[call site]
05181
hts_getline
[function]
[call site]
05182
vcf_parse
[function]
[call site]
05183
ks_resize
[function]
[call site]
05184
bcf_clear
[function]
[call site]
05185
bcf_float_set
[function]
[call site]
05186
kstrtok
[function]
[call site]
05187
kh_get_vdict
[function]
[call site]
05188
hts_log
[function]
[call site]
05189
hts_log
[function]
[call site]
05190
fix_chromosome
[function]
[call site]
05191
ksprintf
[function]
[call site]
05192
bcf_hdr_parse_line
[function]
[call site]
05193
bcf_hdr_add_hrec
[function]
[call site]
05194
bcf_hrec_destroy
[function]
[call site]
05195
bcf_hdr_sync
[function]
[call site]
05196
kh_get_vdict
[function]
[call site]
05197
hts_log
[function]
[call site]
05198
kstrtok
[function]
[call site]
05199
hts_str2uint
[function]
[call site]
05200
hts_log
[function]
[call site]
05201
hts_log
[function]
[call site]
05202
kstrtok
[function]
[call site]
05203
memcmp
[call site]
05204
bcf_enc_vchar
[function]
[call site]
05205
bcf_enc_size
[function]
[call site]
05206
ks_resize
[function]
[call site]
05207
ks_resize
[function]
[call site]
05208
i16_to_le
[function]
[call site]
05209
i32_to_le
[function]
[call site]
05210
kputsn
[function]
[call site]
05211
bcf_enc_size
[function]
[call site]
05212
kstrtok
[function]
[call site]
05213
bcf_enc_vchar
[function]
[call site]
05214
kstrtok
[function]
[call site]
05215
memcmp
[call site]
05216
bcf_seqname_safe
[function]
[call site]
05217
bcf_seqname
[function]
[call site]
05218
bcf_hdr_id2name
[function]
[call site]
05219
hts_log
[function]
[call site]
05220
bcf_enc_vchar
[function]
[call site]
05221
kstrtok
[function]
[call site]
05222
memcmp
[call site]
05223
atof
[call site]
05224
bcf_float_set
[function]
[call site]
05225
kstrtok
[function]
[call site]
05226
memcmp
[call site]
05227
vcf_parse_filter
[function]
[call site]
05228
hts_malloc_p
[function]
[call site]
05229
bcf_seqname_safe
[function]
[call site]
05230
hts_log
[function]
[call site]
05231
kstrtok
[function]
[call site]
05232
kh_get_vdict
[function]
[call site]
05233
bcf_seqname_safe
[function]
[call site]
05234
hts_log
[function]
[call site]
05235
hts_log
[function]
[call site]
05236
ksprintf
[function]
[call site]
05237
bcf_hdr_parse_line
[function]
[call site]
05238
bcf_hdr_add_hrec
[function]
[call site]
05239
bcf_hrec_destroy
[function]
[call site]
05240
bcf_hdr_sync
[function]
[call site]
05241
kh_get_vdict
[function]
[call site]
05242
bcf_seqname_safe
[function]
[call site]
05243
hts_log
[function]
[call site]
05244
bcf_enc_vint
[function]
[call site]
05245
bcf_enc_size
[function]
[call site]
05246
bcf_enc_int1
[function]
[call site]
05247
ks_resize
[function]
[call site]
05248
i16_to_le
[function]
[call site]
05249
i32_to_le
[function]
[call site]
05250
bcf_enc_size
[function]
[call site]
05251
ks_resize
[function]
[call site]
05252
bcf_enc_size
[function]
[call site]
05253
ks_resize
[function]
[call site]
05254
i16_to_le
[function]
[call site]
05255
bcf_enc_size
[function]
[call site]
05256
ks_resize
[function]
[call site]
05257
i32_to_le
[function]
[call site]
05258
bcf_enc_vint
[function]
[call site]
05259
kstrtok
[function]
[call site]
05260
memcmp
[call site]
05261
vcf_parse_info
[function]
[call site]
05262
bcf_seqname_safe
[function]
[call site]
05263
hts_log
[function]
[call site]
05264
kh_get_vdict
[function]
[call site]
05265
bcf_seqname_safe
[function]
[call site]
05266
hts_log
[function]
[call site]
05267
hts_log
[function]
[call site]
05268
ksprintf
[function]
[call site]
05269
bcf_hdr_parse_line
[function]
[call site]
05270
bcf_hdr_add_hrec
[function]
[call site]
05271
bcf_hrec_destroy
[function]
[call site]
05272
bcf_hdr_sync
[function]
[call site]
05273
kh_get_vdict
[function]
[call site]
05274
bcf_seqname_safe
[function]
[call site]
05275
hts_log
[function]
[call site]
05276
bcf_enc_int1
[function]
[call site]
05277
bcf_enc_size
[function]
[call site]
05278
bcf_enc_vchar
[function]
[call site]
05279
hts_realloc_p
[function]
[call site]
05280
bcf_seqname_safe
[function]
[call site]
05281
hts_log
[function]
[call site]
05282
hts_str2int
[function]
[call site]
05283
bcf_seqname_safe
[function]
[call site]
05284
hts_log
[function]
[call site]
05285
bcf_enc_int1
[function]
[call site]
05286
bcf_enc_vint
[function]
[call site]
05287
memcmp
[call site]
05288
bcf_seqname_safe
[function]
[call site]
05289
hts_log
[function]
[call site]
05290
hts_str2dbl
[function]
[call site]
05291
bcf_float_set
[function]
[call site]
05292
bcf_enc_vfloat
[function]
[call site]
05293
__assert_fail
[call site]
05294
bcf_enc_size
[function]
[call site]
05295
serialize_float_array
[function]
[call site]
05296
ks_resize
[function]
[call site]
05297
float_to_le
[function]
[call site]
05298
kstrtok
[function]
[call site]
05299
vcf_parse_format
[function]
[call site]
05300
vcf_parse_format_empty1
[function]
[call site]
05301
bcf_seqname_safe
[function]
[call site]
05302
hts_log
[function]
[call site]
05303
vcf_parse_format_dict2
[function]
[call site]
05304
kstrtok
[function]
[call site]
05305
bcf_seqname_safe
[function]
[call site]
05306
hts_log
[function]
[call site]
05307
kh_get_vdict
[function]
[call site]
05308
bcf_seqname_safe
[function]
[call site]
05309
hts_log
[function]
[call site]
05310
bcf_seqname_safe
[function]
[call site]
05311
hts_log
[function]
[call site]
05312
hts_log
[function]
[call site]
05313
ksprintf
[function]
[call site]
05314
bcf_hdr_parse_line
[function]
[call site]
05315
bcf_hdr_add_hrec
[function]
[call site]
05316
bcf_hrec_destroy
[function]
[call site]
05317
bcf_hdr_sync
[function]
[call site]
05318
kh_get_vdict
[function]
[call site]
05319
bcf_seqname_safe
[function]
[call site]
05320
hts_log
[function]
[call site]
05321
vcf_parse_format_max3
[function]
[call site]
05322
hts_log
[function]
[call site]
05323
vcf_parse_format_alloc4
[function]
[call site]
05324
bcf_seqname_safe
[function]
[call site]
05325
hts_log
[function]
[call site]
05326
align_mem
[function]
[call site]
05327
kputsn
[function]
[call site]
05328
bcf_seqname_safe
[function]
[call site]
05329
hts_log
[function]
[call site]
05330
bcf_seqname_safe
[function]
[call site]
05331
hts_log
[function]
[call site]
05332
ks_resize
[function]
[call site]
05333
bcf_seqname_safe
[function]
[call site]
05334
hts_log
[function]
[call site]
05335
bcf_seqname_safe
[function]
[call site]
05336
hts_log
[function]
[call site]
05337
vcf_parse_format_fill5
[function]
[call site]
05338
bcf_get_version
[function]
[call site]
05339
bcf_seqname_safe
[function]
[call site]
05340
hts_log
[function]
[call site]
05341
hts_str2uint
[function]
[call site]
05342
bcf_seqname_safe
[function]
[call site]
05343
hts_log
[function]
[call site]
05344
bcf_seqname_safe
[function]
[call site]
05345
hts_log
[function]
[call site]
05346
hts_str2int
[function]
[call site]
05347
bcf_seqname_safe
[function]
[call site]
05348
hts_log
[function]
[call site]
05349
isdigit_c
[function]
[call site]
05350
bcf_float_set
[function]
[call site]
05351
hts_str2dbl
[function]
[call site]
05352
bcf_seqname
[function]
[call site]
05353
hts_log
[function]
[call site]
05354
bcf_float_set
[function]
[call site]
05355
bcf_float_set
[function]
[call site]
05356
bcf_seqname_safe
[function]
[call site]
05357
hts_log
[function]
[call site]
05358
hts_strprint
[function]
[call site]
05359
bcf_seqname_safe
[function]
[call site]
05360
hts_log
[function]
[call site]
05361
bcf_float_set
[function]
[call site]
05362
bcf_float_set
[function]
[call site]
05363
vcf_parse_format_gt6
[function]
[call site]
05364
bcf_enc_int1
[function]
[call site]
05365
bcf_enc_size
[function]
[call site]
05366
kputsn
[function]
[call site]
05367
bcf_enc_vint
[function]
[call site]
05368
bcf_enc_size
[function]
[call site]
05369
serialize_float_array
[function]
[call site]
05370
bcf_seqname_safe
[function]
[call site]
05371
hts_log
[function]
[call site]
05372
vcf_parse_format_check7
[function]
[call site]
05373
bcf_seqname_safe
[function]
[call site]
05374
hts_log
[function]
[call site]
05375
bcf_seqname_safe
[function]
[call site]
05376
hts_log
[function]
[call site]
05377
get_rlen
[function]
[call site]
05378
bcf_hdr_id2int
[function]
[call site]
05379
svlen_on_ref_for_vcf_alt
[function]
[call site]
05380
strlen
[call site]
05381
memcmp
[call site]
05382
memcmp
[call site]
05383
memcmp
[call site]
05384
memcmp
[call site]
05385
strcmp
[call site]
05386
strcmp
[call site]
05387
strlen
[call site]
05388
bcf_dec_size
[function]
[call site]
05389
bcf_dec_typed_int1
[function]
[call site]
05390
bcf_dec_int1
[function]
[call site]
05391
le_to_i8
[function]
[call site]
05392
le_to_i16
[function]
[call site]
05393
le_to_i32
[function]
[call site]
05394
le_to_i64
[function]
[call site]
05395
le_to_u64
[function]
[call site]
05396
bcf_dec_size
[function]
[call site]
05397
svlen_on_ref_for_vcf_alt
[function]
[call site]
05398
strncmp
[call site]
05399
strncmp
[call site]
05400
bcf_dec_size
[function]
[call site]
05401
bcf_hdr_id2int
[function]
[call site]
05402
bcf_get_info
[function]
[call site]
05403
bcf_hdr_id2int
[function]
[call site]
05404
bcf_get_info_id
[function]
[call site]
05405
bcf_unpack
[function]
[call site]
05406
bcf_fmt_sized_array
[function]
[call site]
05407
bcf_dec_size
[function]
[call site]
05408
bcf_fmt_array
[function]
[call site]
05409
kputc_
[function]
[call site]
05410
memchr
[call site]
05411
kputsn
[function]
[call site]
05412
kputc
[function]
[call site]
05413
le_to_i8
[function]
[call site]
05414
kputc_
[function]
[call site]
05415
kputc
[function]
[call site]
05416
kputw
[function]
[call site]
05417
le_to_i16
[function]
[call site]
05418
kputc_
[function]
[call site]
05419
kputc
[function]
[call site]
05420
kputw
[function]
[call site]
05421
le_to_i32
[function]
[call site]
05422
kputc_
[function]
[call site]
05423
kputc
[function]
[call site]
05424
kputw
[function]
[call site]
05425
le_to_u32
[function]
[call site]
05426
kputc_
[function]
[call site]
05427
kputc
[function]
[call site]
05428
le_to_float
[function]
[call site]
05429
kputd
[function]
[call site]
05430
hts_log
[function]
[call site]
05431
exit
[call site]
05432
hts_realloc_or_die
[function]
[call site]
05433
bcf_fmt_sized_array
[function]
[call site]
05434
kputc_
[function]
[call site]
05435
bcf_dec_size
[function]
[call site]
05436
hts_realloc_or_die
[function]
[call site]
05437
bcf_dec_int1
[function]
[call site]
05438
hts_realloc_or_die
[function]
[call site]
05439
bcf_unpack_info_core1
[function]
[call site]
05440
bcf_dec_typed_int1
[function]
[call site]
05441
bcf_dec_size
[function]
[call site]
05442
le_to_i16
[function]
[call site]
05443
le_to_i32
[function]
[call site]
05444
le_to_float
[function]
[call site]
05445
le_to_i64
[function]
[call site]
05446
hts_realloc_or_die
[function]
[call site]
05447
bcf_unpack_fmt_core1
[function]
[call site]
05448
bcf_dec_typed_int1
[function]
[call site]
05449
bcf_dec_size
[function]
[call site]
05450
bcf_get_info
[function]
[call site]
05451
bcf_dec_typed_int1
[function]
[call site]
05452
bcf_unpack_info_core1
[function]
[call site]
05453
bcf_unpack_info_core1
[function]
[call site]
05454
bcf_dec_size
[function]
[call site]
05455
bcf_hdr_id2int
[function]
[call site]
05456
bcf_get_fmt
[function]
[call site]
05457
bcf_hdr_id2int
[function]
[call site]
05458
bcf_get_fmt_id
[function]
[call site]
05459
bcf_unpack
[function]
[call site]
05460
bcf_dec_typed_int1
[function]
[call site]
05461
bcf_unpack_fmt_core1
[function]
[call site]
05462
bcf_dec_size
[function]
[call site]
05463
le_to_i8
[function]
[call site]
05464
le_to_i16
[function]
[call site]
05465
le_to_i32
[function]
[call site]
05466
le_to_i64
[function]
[call site]
05467
le_to_i8
[function]
[call site]
05468
le_to_i16
[function]
[call site]
05469
le_to_i32
[function]
[call site]
05470
le_to_i64
[function]
[call site]
05471
bgzf_get_private_data
[function]
[call site]
05472
__assert_fail
[call site]
05473
bcf_read1_core
[function]
[call site]
05474
bgzf_read
[function]
[call site]
05475
bcf_clear
[function]
[call site]
05476
le_to_u32
[function]
[call site]
05477
le_to_u32
[function]
[call site]
05478
ks_resize
[function]
[call site]
05479
ks_resize
[function]
[call site]
05480
le_to_i32
[function]
[call site]
05481
le_to_u32
[function]
[call site]
05482
le_to_i32
[function]
[call site]
05483
le_to_float
[function]
[call site]
05484
le_to_u16
[function]
[call site]
05485
le_to_u16
[function]
[call site]
05486
le_to_u32
[function]
[call site]
05487
bgzf_read
[function]
[call site]
05488
bgzf_read
[function]
[call site]
05489
bcf_record_check
[function]
[call site]
05490
bcf_get_version
[function]
[call site]
05491
bcf_hdr_id2int
[function]
[call site]
05492
hts_log
[function]
[call site]
05493
bcf_dec_size_safe
[function]
[call site]
05494
bcf_dec_typed_int1_safe
[function]
[call site]
05495
le_to_i16
[function]
[call site]
05496
le_to_i32
[function]
[call site]
05497
bcf_seqname_safe
[function]
[call site]
05498
get_type_name
[function]
[call site]
05499
hts_log
[function]
[call site]
05500
bcf_seqname_safe
[function]
[call site]
05501
hts_log
[function]
[call site]
05502
bcf_dec_size_safe
[function]
[call site]
05503
bcf_seqname_safe
[function]
[call site]
05504
get_type_name
[function]
[call site]
05505
hts_log
[function]
[call site]
05506
bcf_dec_size_safe
[function]
[call site]
05507
bcf_seqname_safe
[function]
[call site]
05508
get_type_name
[function]
[call site]
05509
hts_log
[function]
[call site]
05510
bcf_dec_int1
[function]
[call site]
05511
bcf_seqname_safe
[function]
[call site]
05512
hts_log
[function]
[call site]
05513
bcf_dec_typed_int1_safe
[function]
[call site]
05514
bcf_seqname_safe
[function]
[call site]
05515
hts_log
[function]
[call site]
05516
bcf_dec_size_safe
[function]
[call site]
05517
bcf_seqname_safe
[function]
[call site]
05518
get_type_name
[function]
[call site]
05519
hts_log
[function]
[call site]
05520
bcf_dec_typed_int1_safe
[function]
[call site]
05521
bcf_record_check_err
[function]
[call site]
05522
bcf_seqname_safe
[function]
[call site]
05523
hts_log
[function]
[call site]
05524
bcf_dec_size_safe
[function]
[call site]
05525
bcf_record_check_err
[function]
[call site]
05526
updatephasing
[function]
[call site]
05527
bcf_seqname_safe
[function]
[call site]
05528
hts_log
[function]
[call site]
05529
get_rlen
[function]
[call site]
05530
bcf_seqname_safe
[function]
[call site]
05531
hts_log
[function]
[call site]
05532
bcf_seqname_safe
[function]
[call site]
05533
hts_log
[function]
[call site]
05534
bcf_seqname_safe
[function]
[call site]
05535
hts_log
[function]
[call site]
05536
bcf_subset_format
[function]
[call site]
05537
hts_realloc_or_die
[function]
[call site]
05538
bcf_unpack_fmt_core1
[function]
[call site]
05539
bcf_write
[function]
[call site]
05540
bcf_hdr_sync
[function]
[call site]
05541
bcf_seqname_safe
[function]
[call site]
05542
vcf_write
[function]
[call site]
05543
vcf_format
[function]
[call site]
05544
bcf_seqname
[function]
[call site]
05545
hts_log
[function]
[call site]
05546
__errno_location
[call site]
05547
bcf_unpack
[function]
[call site]
05548
get_hdr_aux
[function]
[call site]
05549
calloc
[call site]
05550
kputs
[function]
[call site]
05551
kputc_
[function]
[call site]
05552
kputll
[function]
[call site]
05553
kputc_
[function]
[call site]
05554
kputs
[function]
[call site]
05555
kputc_
[function]
[call site]
05556
kputs
[function]
[call site]
05557
kputc_
[function]
[call site]
05558
kputc_
[function]
[call site]
05559
kputc_
[function]
[call site]
05560
kputs
[function]
[call site]
05561
kputc_
[function]
[call site]
05562
kputc_
[function]
[call site]
05563
bcf_float_is_missing
[function]
[call site]
05564
kputc_
[function]
[call site]
05565
kputd
[function]
[call site]
05566
kputc_
[function]
[call site]
05567
bcf_seqname_safe
[function]
[call site]
05568
hts_log
[function]
[call site]
05569
__errno_location
[call site]
05570
kputc_
[function]
[call site]
05571
strlen
[call site]
05572
kputsn
[function]
[call site]
05573
kputc_
[function]
[call site]
05574
kputc_
[function]
[call site]
05575
bcf_dec_typed_int1
[function]
[call site]
05576
bcf_dec_size
[function]
[call site]
05577
bcf_seqname_safe
[function]
[call site]
05578
hts_log
[function]
[call site]
05579
__errno_location
[call site]
05580
strlen
[call site]
05581
ks_resize
[function]
[call site]
05582
bcf_fmt_array
[function]
[call site]
05583
bcf_float_is_missing
[function]
[call site]
05584
kputd
[function]
[call site]
05585
kputc_
[function]
[call site]
05586
kputc_
[function]
[call site]
05587
kputw
[function]
[call site]
05588
kputc_
[function]
[call site]
05589
kputll
[function]
[call site]
05590
bcf_seqname_safe
[function]
[call site]
05591
hts_log
[function]
[call site]
05592
__errno_location
[call site]
05593
kputc_
[function]
[call site]
05594
kputc_
[function]
[call site]
05595
hts_malloc_p
[function]
[call site]
05596
bcf_dec_typed_int1
[function]
[call site]
05597
bcf_dec_size
[function]
[call site]
05598
kputc_
[function]
[call site]
05599
bcf_seqname_safe
[function]
[call site]
05600
hts_log
[function]
[call site]
05601
__errno_location
[call site]
05602
strlen
[call site]
05603
kputsn
[function]
[call site]
05604
kputsn
[function]
[call site]
05605
kputc_
[function]
[call site]
05606
kputc_
[function]
[call site]
05607
bcf_format_gt_v2
[function]
[call site]
05608
le_to_i8
[function]
[call site]
05609
kputc
[function]
[call site]
05610
kputw
[function]
[call site]
05611
le_to_i16
[function]
[call site]
05612
kputc
[function]
[call site]
05613
kputw
[function]
[call site]
05614
le_to_i32
[function]
[call site]
05615
kputc
[function]
[call site]
05616
kputw
[function]
[call site]
05617
kputc
[function]
[call site]
05618
hts_log
[function]
[call site]
05619
get_hdr_aux
[function]
[call site]
05620
kinsert_char
[function]
[call site]
05621
ks_resize
[function]
[call site]
05622
kinsert_char
[function]
[call site]
05623
kinsert_char
[function]
[call site]
05624
hts_log
[function]
[call site]
05625
__errno_location
[call site]
05626
bcf_fmt_array1
[function]
[call site]
05627
kputc_
[function]
[call site]
05628
kputc_
[function]
[call site]
05629
kputw
[function]
[call site]
05630
le_to_i16
[function]
[call site]
05631
kputc_
[function]
[call site]
05632
kputw
[function]
[call site]
05633
le_to_i32
[function]
[call site]
05634
kputc_
[function]
[call site]
05635
kputw
[function]
[call site]
05636
le_to_u32
[function]
[call site]
05637
kputc_
[function]
[call site]
05638
le_to_float
[function]
[call site]
05639
kputd
[function]
[call site]
05640
hts_log
[function]
[call site]
05641
bcf_fmt_array
[function]
[call site]
05642
kputc_
[function]
[call site]
05643
bcf_fmt_array1
[function]
[call site]
05644
bcf_fmt_array
[function]
[call site]
05645
kputc_
[function]
[call site]
05646
kputsn
[function]
[call site]
05647
kputc
[function]
[call site]
05648
bgzf_flush_try
[function]
[call site]
05649
hts_idx_amend_last
[function]
[call site]
05650
bgzf_write
[function]
[call site]
05651
hwrite
[function]
[call site]
05652
bcf_seqname_safe
[function]
[call site]
05653
hts_idx_tbi_name
[function]
[call site]
05654
strlen
[call site]
05655
hts_realloc_ps
[function]
[call site]
05656
strcpy
[call site]
05657
le_to_u32
[function]
[call site]
05658
u32_to_le
[function]
[call site]
05659
bgzf_idx_push
[function]
[call site]
05660
bcf_strerror
[function]
[call site]
05661
add_desc_to_buffer
[function]
[call site]
05662
add_desc_to_buffer
[function]
[call site]
05666
bcf_seqname_safe
[function]
[call site]
05667
hts_log
[function]
[call site]
05668
bcf1_sync
[function]
[call site]
05669
bcf1_sync_id
[function]
[call site]
05670
strcmp
[call site]
05671
strlen
[call site]
05672
bcf_enc_vchar
[function]
[call site]
05673
bcf_enc_size
[function]
[call site]
05674
bcf1_sync_alleles
[function]
[call site]
05675
bcf1_sync_filter
[function]
[call site]
05679
bcf_enc_vint
[function]
[call site]
05680
bcf_enc_vint
[function]
[call site]
05681
bcf1_sync_info
[function]
[call site]
05682
kputsn_
[function]
[call site]
05683
bcf_unpack
[function]
[call site]
05684
bcf1_sync_id
[function]
[call site]
05685
kputsn_
[function]
[call site]
05686
bcf1_sync_alleles
[function]
[call site]
05687
kputsn_
[function]
[call site]
05688
strlen
[call site]
05689
bcf1_sync_filter
[function]
[call site]
05690
kputsn_
[function]
[call site]
05691
bcf_enc_vint
[function]
[call site]
05692
bcf1_sync_info
[function]
[call site]
05693
kputsn_
[function]
[call site]
05694
kputsn_
[function]
[call site]
05695
bcf_seqname_safe
[function]
[call site]
05696
hts_log
[function]
[call site]
05697
u32_to_le
[function]
[call site]
05698
u32_to_le
[function]
[call site]
05699
i32_to_le
[function]
[call site]
05700
u32_to_le
[function]
[call site]
05701
u32_to_le
[function]
[call site]
05702
float_to_le
[function]
[call site]
05703
u16_to_le
[function]
[call site]
05704
u16_to_le
[function]
[call site]
05705
u32_to_le
[function]
[call site]
05706
bgzf_write
[function]
[call site]
05707
bgzf_write
[function]
[call site]
05708
bgzf_write
[function]
[call site]
05709
bgzf_idx_push
[function]
[call site]
05710
bcf_destroy
[function]
[call site]
05711
bcf_empty
[function]
[call site]
05712
bcf_clear
[function]
[call site]
05713
bcf_hdr_destroy
[function]
[call site]
05714
hts_close_or_abort
[function]
[call site]
05715
hts_close
[function]
[call site]
05716
view_vcf
[function]
[call site]
05717