The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 284 | 4171 | sam_read1 | call site: 04171 | bam_sym_lookup |
| 151 | 1623 | hts_hopen | call site: 01623 | hts_process_opts |
| 114 | 4937 | idx_find_and_load | call site: 04937 | hts_idx_load3 |
| 79 | 2625 | zlib_mem_deflate | call site: 02625 | fqz_compress |
| 76 | 1545 | refs2id | call site: 01545 | hts_tpool_init |
| 73 | 3115 | ks_free | call site: 03115 | cram_get_ref |
| 67 | 2778 | rans_compress_to_4x16 | call site: 02778 | arith_compress_to |
| 66 | 3584 | cram_write_SAM_hdr | call site: 03584 | sam_hdr_remove_tag_all |
| 66 | 4074 | hts_realloc_ps | call site: 04074 | sam_parse_worker |
| 64 | 5083 | idx_find_and_load | call site: 05083 | hts_idx_load3 |
| 63 | 1873 | sam_format1_append | call site: 01873 | hts_set_opt |
| 53 | 1196 | cram_set_voption | call site: 01196 | cram_load_reference |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
__errno_location
[call site]
00024
realloc
[call site]
00025
__ac_FNV1a_hash_string
[function]
[call site]
00026
strcmp
[call site]
00027
__errno_location
[call site]
00028
strerror
[call site]
00029
hts_log
[function]
[call site]
00030
priority
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
hfile_add_scheme_handler
[function]
[call site]
00033
init_add_plugin
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hts_log
[function]
[call site]
00037
hfile_plugin_init_mem
[function]
[call site]
00038
hfile_add_scheme_handler
[function]
[call site]
00039
init_add_plugin
[function]
[call site]
00040
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00041
hfile_add_scheme_handler
[function]
[call site]
00042
init_add_plugin
[function]
[call site]
00043
hfile_plugin_init_libcurl
[function]
[call site]
00044
hts_version
[function]
[call site]
00045
curl_global_init
[call site]
00046
__errno_location
[call site]
00047
curl_share_init
[call site]
00048
curl_global_cleanup
[call site]
00049
__errno_location
[call site]
00050
curl_share_setopt
[call site]
00051
share_lock
[function]
[call site]
00052
pthread_mutex_lock
[call site]
00053
curl_share_setopt
[call site]
00054
share_unlock
[function]
[call site]
00055
pthread_mutex_unlock
[call site]
00056
curl_share_setopt
[call site]
00057
curl_share_cleanup
[call site]
00058
curl_global_cleanup
[call site]
00059
__errno_location
[call site]
00060
getenv
[call site]
00061
strdup
[call site]
00062
kh_init_auth_map
[function]
[call site]
00063
calloc
[call site]
00064
__errno_location
[call site]
00065
kh_destroy_auth_map
[function]
[call site]
00066
curl_share_cleanup
[call site]
00067
curl_global_cleanup
[call site]
00068
__errno_location
[call site]
00069
getenv
[call site]
00070
strcmp
[call site]
00071
getenv
[call site]
00072
atoi
[call site]
00073
getenv
[call site]
00074
atol
[call site]
00075
getenv
[call site]
00076
atol
[call site]
00077
getenv
[call site]
00078
atol
[call site]
00079
getenv
[call site]
00080
atol
[call site]
00081
curl_version_info
[call site]
00082
ksprintf
[function]
[call site]
00083
kvsprintf
[function]
[call site]
00084
kputd
[function]
[call site]
00085
kputsn
[function]
[call site]
00086
__errno_location
[call site]
00087
ks_resize
[function]
[call site]
00088
realloc
[call site]
00089
kputsn
[function]
[call site]
00090
kputc
[function]
[call site]
00091
ks_resize
[function]
[call site]
00092
ks_resize
[function]
[call site]
00093
snprintf
[call site]
00094
kputsn
[function]
[call site]
00095
vsnprintf
[call site]
00096
ks_resize
[function]
[call site]
00097
vsnprintf
[call site]
00098
hfile_add_scheme_handler
[function]
[call site]
00099
init_add_plugin
[function]
[call site]
00100
hfile_plugin_init_gcs
[function]
[call site]
00101
hfile_add_scheme_handler
[function]
[call site]
00102
hfile_add_scheme_handler
[function]
[call site]
00103
hfile_add_scheme_handler
[function]
[call site]
00104
init_add_plugin
[function]
[call site]
00105
hfile_plugin_init_s3
[function]
[call site]
00106
hts_version
[function]
[call site]
00107
curl_global_init
[call site]
00108
__errno_location
[call site]
00109
curl_share_init
[call site]
00110
curl_global_cleanup
[call site]
00111
__errno_location
[call site]
00112
curl_share_setopt
[call site]
00113
share_lock
[function]
[call site]
00114
pthread_mutex_lock
[call site]
00115
curl_share_setopt
[call site]
00116
share_unlock
[function]
[call site]
00117
pthread_mutex_unlock
[call site]
00118
curl_share_setopt
[call site]
00119
curl_share_cleanup
[call site]
00120
curl_global_cleanup
[call site]
00121
__errno_location
[call site]
00122
curl_version_info
[call site]
00123
ksprintf
[function]
[call site]
00124
hfile_add_scheme_handler
[function]
[call site]
00125
hfile_add_scheme_handler
[function]
[call site]
00126
hfile_add_scheme_handler
[function]
[call site]
00127
atexit
[call site]
00128
hfile_exit
[function]
[call site]
00129
hfile_shutdown
[function]
[call site]
00130
pthread_mutex_lock
[call site]
00131
kh_destroy_scheme_string
[function]
[call site]
00132
pthread_mutex_unlock
[call site]
00133
pthread_mutex_destroy
[call site]
00134
pthread_mutex_unlock
[call site]
00135
pthread_mutex_unlock
[call site]
00136
kh_get_scheme_string
[function]
[call site]
00137
strchr
[call site]
00138
strcmp
[call site]
00139
hopen_fd_stdinout
[function]
[call site]
00140
strchr
[call site]
00141
snprintf
[call site]
00142
hdopen
[function]
[call site]
00143
blksize
[function]
[call site]
00144
fstat
[call site]
00145
hfile_init
[function]
[call site]
00146
strchr
[call site]
00147
posix_memalign
[call site]
00148
strchr
[call site]
00149
hfile_destroy
[function]
[call site]
00150
__errno_location
[call site]
00151
__errno_location
[call site]
00152
strchr
[call site]
00153
strchr
[call site]
00154
hopen_fd
[function]
[call site]
00155
hfile_oflags
[function]
[call site]
00156
open
[call site]
00157
blksize
[function]
[call site]
00158
hfile_init
[function]
[call site]
00159
__errno_location
[call site]
00160
close
[call site]
00161
hfile_destroy
[function]
[call site]
00162
hts_hopen
[function]
[call site]
00163
calloc
[call site]
00164
strdup
[call site]
00165
ed_is_big
[function]
[call site]
00166
strchr
[call site]
00167
strncpy
[call site]
00168
strncpy
[call site]
00169
strchr
[call site]
00170
hts_detect_format2
[function]
[call site]
00171
hpeek
[function]
[call site]
00172
refill_buffer
[function]
[call site]
00173
__errno_location
[call site]
00174
memcmp
[call site]
00175
memcmp
[call site]
00176
decompress_peek_gz
[function]
[call site]
00177
hpeek
[function]
[call site]
00178
inflateInit2_
[call site]
00179
inflate
[call site]
00180
inflateReset
[call site]
00181
inflateEnd
[call site]
00182
memcmp
[call site]
00183
memcmp
[call site]
00184
memcmp
[call site]
00185
memcmp
[call site]
00186
decompress_peek_xz
[function]
[call site]
00187
hpeek
[function]
[call site]
00188
lzma_easy_decoder_memusage
[call site]
00189
lzma_stream_decoder
[call site]
00190
lzma_code
[call site]
00191
lzma_end
[call site]
00192
lzma_end
[call site]
00193
memcmp
[call site]
00194
hpeek
[function]
[call site]
00195
strcmp
[call site]
00196
find_file_extension
[function]
[call site]
00197
strstr
[call site]
00198
strlen
[call site]
00199
tolower_c
[function]
[call site]
00200
memcmp
[call site]
00201
memcmp
[call site]
00202
memcmp
[call site]
00203
memcmp
[call site]
00204
memcmp
[call site]
00205
memcmp
[call site]
00206
memcmp
[call site]
00207
strcmp
[call site]
00208
memcmp
[call site]
00209
parse_version
[function]
[call site]
00210
isdigit_c
[function]
[call site]
00211
__ctype_b_loc
[call site]
00212
isdigit_c
[function]
[call site]
00213
memcmp
[call site]
00214
memcmp
[call site]
00215
memcmp
[call site]
00216
memcmp
[call site]
00217
parse_version
[function]
[call site]
00218
memcmp
[call site]
00219
cmp_nonblank
[function]
[call site]
00220
isspace_c
[function]
[call site]
00221
__ctype_b_loc
[call site]
00222
memcmp
[call site]
00223
is_fastaq
[function]
[call site]
00224
is_fastaq
[function]
[call site]
00228
parse_tabbed_text
[function]
[call site]
00229
isdigit_c
[function]
[call site]
00230
strchr
[call site]
00231
isdigit_c
[function]
[call site]
00232
colmatch
[function]
[call site]
00233
colmatch
[function]
[call site]
00234
strstr
[call site]
00235
colmatch
[function]
[call site]
00236
strstr
[call site]
00237
colmatch
[function]
[call site]
00238
colmatch
[function]
[call site]
00239
is_text_only
[function]
[call site]
00240
__errno_location
[call site]
00241
hopen_htsget_redirect
[function]
[call site]
00242
hfile_init
[function]
[call site]
00243
parse_ga4gh_redirect_json
[function]
[call site]
00244
hts_json_fnext
[function]
[call site]
00245
hgetc
[function]
[call site]
00246
hgetc2
[function]
[call site]
00247
refill_buffer
[function]
[call site]
00248
fscan_string
[function]
[call site]
00249
hgetc
[function]
[call site]
00250
hgetc
[function]
[call site]
00251
kputc
[function]
[call site]
00252
kputc
[function]
[call site]
00253
kputc
[function]
[call site]
00254
kputc
[function]
[call site]
00255
kputc
[function]
[call site]
00256
kputc
[function]
[call site]
00257
hgetc
[function]
[call site]
00258
dehex
[function]
[call site]
00259
hgetc
[function]
[call site]
00260
dehex
[function]
[call site]
00261
hgetc
[function]
[call site]
00262
dehex
[function]
[call site]
00263
hgetc
[function]
[call site]
00264
dehex
[function]
[call site]
00265
encode_utf8
[function]
[call site]
00266
kputsn
[function]
[call site]
00267
kputc
[function]
[call site]
00268
kputsn
[function]
[call site]
00269
kputc
[function]
[call site]
00270
hpeek
[function]
[call site]
00271
strchr
[call site]
00272
hgetc
[function]
[call site]
00273
kputc
[function]
[call site]
00274
token_type
[function]
[call site]
00275
hts_json_fnext
[function]
[call site]
00279
strcmp
[call site]
00280
parse_ga4gh_body_json
[function]
[call site]
00281
hts_json_fnext
[function]
[call site]
00282
hts_json_fnext
[function]
[call site]
00283
strcmp
[call site]
00284
hts_json_fnext
[function]
[call site]
00285
hts_json_fnext
[function]
[call site]
00286
hts_realloc_or_die
[function]
[call site]
00287
__errno_location
[call site]
00288
realloc
[call site]
00289
__errno_location
[call site]
00290
strerror
[call site]
00291
hts_log
[function]
[call site]
00292
exit
[call site]
00293
hts_json_fnext
[function]
[call site]
00294
strcmp
[call site]
00295
hts_json_fnext
[function]
[call site]
00296
ks_release
[function]
[call site]
00297
strcmp
[call site]
00298
hts_json_fnext
[function]
[call site]
00299
hts_json_fnext
[function]
[call site]
00300
hts_json_fnext
[function]
[call site]
00301
kputs
[function]
[call site]
00302
__errno_location
[call site]
00303
strlen
[call site]
00304
kputsn
[function]
[call site]
00305
kputs
[function]
[call site]
00306
hts_realloc_or_die
[function]
[call site]
00307
ks_release
[function]
[call site]
00308
hts_json_fskip_value
[function]
[call site]
00309
skip_value
[function]
[call site]
00310
fnext
[function]
[call site]
00311
hts_json_fnext
[function]
[call site]
00312
strcmp
[call site]
00313
hts_json_fnext
[function]
[call site]
00314
hts_log
[function]
[call site]
00315
hts_json_fskip_value
[function]
[call site]
00316
hts_json_fnext
[function]
[call site]
00317
free_all_parts
[function]
[call site]
00318
free_part
[function]
[call site]
00319
hfile_destroy
[function]
[call site]
00320
__errno_location
[call site]
00321
hclose_abruptly
[function]
[call site]
00322
__errno_location
[call site]
00323
hfile_destroy
[function]
[call site]
00324
__errno_location
[call site]
00325
hts_crypt4gh_redirect
[function]
[call site]
00326
strlen
[call site]
00327
snprintf
[call site]
00328
strchr
[call site]
00329
snprintf
[call site]
00330
hopen
[function]
[call site]
00331
hts_detect_format2
[function]
[call site]
00332
strchr
[call site]
00333
strchr
[call site]
00334
strchr
[call site]
00335
strchr
[call site]
00336
strchr
[call site]
00337
strchr
[call site]
00338
strchr
[call site]
00339
strchr
[call site]
00340
abort
[call site]
00341
format_category
[function]
[call site]
00342
__errno_location
[call site]
00343
bgzf_hopen
[function]
[call site]
00344
strchr
[call site]
00345
bgzf_read_init
[function]
[call site]
00346
hpeek
[function]
[call site]
00347
calloc
[call site]
00348
hts_malloc_p
[function]
[call site]
00349
hts_prod_sat2
[function]
[call site]
00350
hts_malloc
[function]
[call site]
00351
__errno_location
[call site]
00352
memcmp
[call site]
00353
memcmp
[call site]
00354
hts_log
[function]
[call site]
00355
razf_info
[function]
[call site]
00356
strcmp
[call site]
00357
hseek
[function]
[call site]
00358
writebuffer_is_nonempty
[function]
[call site]
00359
flush_buffer
[function]
[call site]
00360
__errno_location
[call site]
00361
htell
[function]
[call site]
00362
__errno_location
[call site]
00363
__errno_location
[call site]
00364
__errno_location
[call site]
00365
hread
[function]
[call site]
00366
hread2
[function]
[call site]
00367
__errno_location
[call site]
00368
refill_buffer
[function]
[call site]
00369
ed_is_big
[function]
[call site]
00370
ed_swap_8p
[function]
[call site]
00371
ed_swap_8
[function]
[call site]
00372
hts_log
[function]
[call site]
00373
hts_log
[function]
[call site]
00374
__errno_location
[call site]
00375
kh_init_bgzf_cache
[function]
[call site]
00376
calloc
[call site]
00377
strchr
[call site]
00378
bgzf_write_init
[function]
[call site]
00379
calloc
[call site]
00380
mode2level
[function]
[call site]
00381
strchr
[call site]
00382
hts_malloc_p
[function]
[call site]
00383
strchr
[call site]
00384
calloc
[call site]
00385
deflateInit2_
[call site]
00386
bgzf_zerr
[function]
[call site]
00387
hts_log
[function]
[call site]
00391
__errno_location
[call site]
00392
strerror
[call site]
00393
hts_log
[function]
[call site]
00394
__errno_location
[call site]
00395
ed_is_big
[function]
[call site]
00396
cram_dopen
[function]
[call site]
00397
calloc
[call site]
00398
cram_read_file_def
[function]
[call site]
00399
hread
[function]
[call site]
00400
memcmp
[call site]
00401
hts_log
[function]
[call site]
00402
cram_init_tables
[function]
[call site]
00403
cram_init_varint
[function]
[call site]
00404
cram_read_SAM_hdr
[function]
[call site]
00405
int32_decode
[function]
[call site]
00406
hread
[function]
[call site]
00407
hread
[function]
[call site]
00408
cram_read_container
[function]
[call site]
00409
int32_decode
[function]
[call site]
00410
crc32
[call site]
00411
calloc
[call site]
00412
__errno_location
[call site]
00413
cram_free_container
[function]
[call site]
00414
cram_free_compression_header
[function]
[call site]
00415
kh_destroy_map
[function]
[call site]
00416
cram_free_block
[function]
[call site]
00417
kh_destroy_m_s2i
[function]
[call site]
00418
string_pool_destroy
[function]
[call site]
00419
cram_free_block
[function]
[call site]
00420
cram_free_slice
[function]
[call site]
00421
free_bam_list
[function]
[call site]
00422
bam_destroy1
[function]
[call site]
00423
bam_get_mempolicy
[function]
[call site]
00424
bam_get_mempolicy
[function]
[call site]
00425
bam_get_mempolicy
[function]
[call site]
00426
cram_free_block
[function]
[call site]
00427
cram_free_block
[function]
[call site]
00428
cram_free_block
[function]
[call site]
00429
cram_free_slice_header
[function]
[call site]
00430
cram_free_block
[function]
[call site]
00431
cram_free_block
[function]
[call site]
00432
cram_free_block
[function]
[call site]
00433
cram_free_block
[function]
[call site]
00434
cram_free_block
[function]
[call site]
00435
cram_free_block
[function]
[call site]
00436
string_pool_destroy
[function]
[call site]
00437
kh_destroy_m_s2i
[function]
[call site]
00438
kh_destroy_m_s2i
[function]
[call site]
00439
cram_free_slice
[function]
[call site]
00440
cram_stats_free
[function]
[call site]
00441
kh_destroy_m_i2i
[function]
[call site]
00442
cram_free_block
[function]
[call site]
00443
cram_free_block
[function]
[call site]
00444
kh_destroy_m_tagmap
[function]
[call site]
00445
free_bam_list
[function]
[call site]
00446
cram_free_container
[function]
[call site]
00447
hts_malloc_p
[function]
[call site]
00448
hts_prod_sat2
[function]
[call site]
00449
hts_malloc
[function]
[call site]
00450
__errno_location
[call site]
00451
cram_free_container
[function]
[call site]
00452
cram_free_container
[function]
[call site]
00453
int32_decode
[function]
[call site]
00454
cram_free_container
[function]
[call site]
00455
hts_log
[function]
[call site]
00456
cram_free_container
[function]
[call site]
00457
cram_free_container
[function]
[call site]
00458
cram_read_block
[function]
[call site]
00459
hgetc
[function]
[call site]
00460
hts_log
[function]
[call site]
00461
crc32
[call site]
00462
hgetc
[function]
[call site]
00463
crc32
[call site]
00464
hread
[function]
[call site]
00465
hread
[function]
[call site]
00466
int32_decode
[function]
[call site]
00467
cram_free_container
[function]
[call site]
00468
cram_uncompress_block
[function]
[call site]
00469
crc32
[call site]
00470
hts_log
[function]
[call site]
00471
__assert_fail
[call site]
00472
hts_log
[function]
[call site]
00473
zlib_mem_inflate
[function]
[call site]
00474
__assert_fail
[call site]
00475
__assert_fail
[call site]
00476
__assert_fail
[call site]
00477
inflateInit2_
[call site]
00478
hts_log
[function]
[call site]
00479
inflate
[call site]
00480
hts_log
[function]
[call site]
00481
inflateEnd
[call site]
00482
inflateEnd
[call site]
00483
BZ2_bzBuffToBuffDecompress
[call site]
00484
lzma_mem_inflate
[function]
[call site]
00485
lzma_easy_decoder_memusage
[call site]
00486
lzma_stream_decoder
[call site]
00487
realloc
[call site]
00488
lzma_code
[call site]
00489
hts_log
[function]
[call site]
00490
lzma_code
[call site]
00491
hts_log
[function]
[call site]
00492
realloc
[call site]
00493
lzma_end
[call site]
00494
lzma_end
[call site]
00495
rans_uncompress
[function]
[call site]
00496
rans_uncompress_O1
[function]
[call site]
00497
htscodecs_tls_calloc
[function]
[call site]
00498
htscodecs_tls_alloc
[function]
[call site]
00499
pthread_once
[call site]
00500
htscodecs_tls_init
[function]
[call site]
00501
pthread_key_create
[call site]
00502
htscodecs_tls_free_all
[function]
[call site]
00503
fprintf
[call site]
00504
strerror
[call site]
00505
fprintf
[call site]
00506
pthread_getspecific
[call site]
00507
calloc
[call site]
00508
pthread_setspecific
[call site]
00509
fprintf
[call site]
00510
calloc
[call site]
00511
RansDecSymbolInit32
[function]
[call site]
00512
__assert_fail
[call site]
00513
__assert_fail
[call site]
00514
RansDecInit
[function]
[call site]
00515
RansDecInit
[function]
[call site]
00516
RansDecInit
[function]
[call site]
00517
RansDecInit
[function]
[call site]
00518
RansDecAdvanceStep
[function]
[call site]
00519
RansDecAdvanceStep
[function]
[call site]
00520
RansDecAdvanceStep
[function]
[call site]
00521
RansDecAdvanceStep
[function]
[call site]
00522
RansDecRenorm2
[function]
[call site]
00523
RansDecRenorm2
[function]
[call site]
00524
RansDecRenormSafe
[function]
[call site]
00525
RansDecRenormSafe
[function]
[call site]
00526
RansDecRenormSafe
[function]
[call site]
00527
RansDecRenormSafe
[function]
[call site]
00528
RansDecGet
[function]
[call site]
00529
RansDecRenormSafe
[function]
[call site]
00530
htscodecs_tls_free
[function]
[call site]
00531
rans_uncompress_O0
[function]
[call site]
00535
RansDecInit
[function]
[call site]
00536
RansDecInit
[function]
[call site]
00537
RansDecInit
[function]
[call site]
00538
RansDecInit
[function]
[call site]
00539
RansDecRenorm2
[function]
[call site]
00540
RansDecRenorm2
[function]
[call site]
00541
RansDecRenormSafe
[function]
[call site]
00542
RansDecRenormSafe
[function]
[call site]
00543
RansDecRenormSafe
[function]
[call site]
00544
RansDecRenormSafe
[function]
[call site]
00545
fqz_decompress
[function]
[call site]
00546
uncompress_block_fqz2f
[function]
[call site]
00547
var_get_u32
[function]
[call site]
00548
fqz_read_parameters
[function]
[call site]
00549
read_array
[function]
[call site]
00550
fqz_read_parameters1
[function]
[call site]
00551
read_array
[function]
[call site]
00552
read_array
[function]
[call site]
00553
read_array
[function]
[call site]
00554
fqz_free_parameters
[function]
[call site]
00555
fqz_create_models
[function]
[call site]
00556
htscodecs_tls_alloc
[function]
[call site]
00557
SIMPLE_MODEL256_init
[function]
[call site]
00558
SIMPLE_MODEL256_init
[function]
[call site]
00559
SIMPLE_MODEL2_init
[function]
[call site]
00560
SIMPLE_MODEL2_init
[function]
[call site]
00561
SIMPLE_MODEL256_init
[function]
[call site]
00562
RC_SetInput
[function]
[call site]
00563
RC_StartDecode
[function]
[call site]
00564
realloc
[call site]
00565
realloc
[call site]
00566
decompress_new_read
[function]
[call site]
00567
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00568
RC_GetFreq
[function]
[call site]
00569
RC_Decode
[function]
[call site]
00570
SIMPLE_MODEL256_normalize
[function]
[call site]
00571
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00572
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00573
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00574
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00575
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00576
SIMPLE_MODEL2_normalize
[function]
[call site]
00577
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00578
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00579
fqz_update_ctx
[function]
[call site]
00580
realloc
[call site]
00581
realloc
[call site]
00582
RC_FinishDecode
[function]
[call site]
00583
fqz_destroy_models
[function]
[call site]
00584
htscodecs_tls_free
[function]
[call site]
00585
fqz_free_parameters
[function]
[call site]
00586
fqz_destroy_models
[function]
[call site]
00587
fqz_free_parameters
[function]
[call site]
00588
rans_uncompress_4x16
[function]
[call site]
00589
rans_uncompress_to_4x16
[function]
[call site]
00590
var_get_u32
[function]
[call site]
00591
var_get_u32
[function]
[call site]
00592
rans_uncompress_to_4x16
[function]
[call site]
00593
unstripe
[function]
[call site]
00594
var_get_u32
[function]
[call site]
00595
hts_unpack_meta
[function]
[call site]
00596
var_get_u32
[function]
[call site]
00597
var_get_u32
[function]
[call site]
00598
var_get_u32
[function]
[call site]
00599
var_get_u32
[function]
[call site]
00600
rans_dec_func
[function]
[call site]
00601
pthread_once
[call site]
00602
htscodecs_tls_cpu_init
[function]
[call site]
00603
__get_cpuid_max
[function]
[call site]
00604
not_ancient_darwin
[function]
[call site]
00605
strerror
[call site]
00606
fprintf
[call site]
00607
fprintf
[call site]
00608
rans_dec_func
[function]
[call site]
00609
hts_rle_decode
[function]
[call site]
00610
var_get_u32
[function]
[call site]
00611
hts_unpack
[function]
[call site]
00612
arith_uncompress_to
[function]
[call site]
00613
var_get_u32
[function]
[call site]
00614
var_get_u32
[function]
[call site]
00615
arith_uncompress_to
[function]
[call site]
00616
unstripe
[function]
[call site]
00617
var_get_u32
[function]
[call site]
00618
hts_unpack_meta
[function]
[call site]
00619
var_get_u32
[function]
[call site]
00620
BZ2_bzBuffToBuffDecompress
[call site]
00621
arith_uncompress_O1_RLE
[function]
[call site]
00622
htscodecs_tls_alloc
[function]
[call site]
00623
SIMPLE_MODEL256_init
[function]
[call site]
00624
htscodecs_tls_alloc
[function]
[call site]
00625
htscodecs_tls_free
[function]
[call site]
00626
SIMPLE_MODEL258_init
[function]
[call site]
00627
RC_SetInput
[function]
[call site]
00628
RC_StartDecode
[function]
[call site]
00629
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00630
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00631
SIMPLE_MODEL258_normalize
[function]
[call site]
00632
RC_FinishDecode
[function]
[call site]
00633
htscodecs_tls_free
[function]
[call site]
00634
htscodecs_tls_free
[function]
[call site]
00635
htscodecs_tls_free
[function]
[call site]
00636
htscodecs_tls_free
[function]
[call site]
00637
arith_uncompress_O0_RLE
[function]
[call site]
00638
SIMPLE_MODEL256_init
[function]
[call site]
00639
htscodecs_tls_alloc
[function]
[call site]
00640
SIMPLE_MODEL258_init
[function]
[call site]
00641
RC_SetInput
[function]
[call site]
00642
RC_StartDecode
[function]
[call site]
00643
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00644
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00645
RC_FinishDecode
[function]
[call site]
00646
htscodecs_tls_free
[function]
[call site]
00647
htscodecs_tls_free
[function]
[call site]
00648
arith_uncompress_O1
[function]
[call site]
00649
htscodecs_tls_alloc
[function]
[call site]
00650
SIMPLE_MODEL256_init
[function]
[call site]
00651
RC_SetInput
[function]
[call site]
00652
RC_StartDecode
[function]
[call site]
00653
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00654
RC_FinishDecode
[function]
[call site]
00655
htscodecs_tls_free
[function]
[call site]
00656
htscodecs_tls_free
[function]
[call site]
00657
arith_uncompress_O0
[function]
[call site]
00658
SIMPLE_MODEL256_init
[function]
[call site]
00659
RC_SetInput
[function]
[call site]
00660
RC_StartDecode
[function]
[call site]
00661
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00662
RC_FinishDecode
[function]
[call site]
00663
hts_unpack
[function]
[call site]
00664
tok3_decode_names
[function]
[call site]
00665
create_context
[function]
[call site]
00666
fprintf
[call site]
00667
htscodecs_tls_alloc
[function]
[call site]
00668
uncompressed_size
[function]
[call site]
00669
var_get_u32
[function]
[call site]
00670
var_get_u32
[function]
[call site]
00671
uncompress
[function]
[call site]
00672
var_get_u32
[function]
[call site]
00673
arith_decode
[function]
[call site]
00674
var_get_u32
[function]
[call site]
00675
arith_uncompress_to
[function]
[call site]
00676
rans_decode
[function]
[call site]
00677
var_get_u32
[function]
[call site]
00678
rans_uncompress_to_4x16
[function]
[call site]
00679
decode_name
[function]
[call site]
00680
decode_token_type
[function]
[call site]
00681
decode_token_int
[function]
[call site]
00682
strlen
[call site]
00683
strcpy
[call site]
00684
strlen
[call site]
00685
decode_token_type
[function]
[call site]
00686
decode_token_char
[function]
[call site]
00687
decode_token_alpha
[function]
[call site]
00688
decode_token_int1
[function]
[call site]
00689
decode_token_int
[function]
[call site]
00690
append_uint32_fixed
[function]
[call site]
00691
decode_token_int1
[function]
[call site]
00692
append_uint32_fixed
[function]
[call site]
00693
decode_token_int
[function]
[call site]
00694
append_uint32_var
[function]
[call site]
00695
decode_token_int1
[function]
[call site]
00696
append_uint32_var
[function]
[call site]
00697
append_uint32_var
[function]
[call site]
00698
append_uint32_fixed
[function]
[call site]
00699
realloc
[call site]
00700
free_context
[function]
[call site]
00701
pool_destroy
[function]
[call site]
00702
htscodecs_tls_free
[function]
[call site]
00703
free_context
[function]
[call site]
00704
cram_free_container
[function]
[call site]
00705
cram_free_block
[function]
[call site]
00706
int32_get_blk
[function]
[call site]
00707
cram_free_container
[function]
[call site]
00708
cram_free_block
[function]
[call site]
00709
cram_free_container
[function]
[call site]
00710
cram_free_block
[function]
[call site]
00711
cram_free_block
[function]
[call site]
00712
cram_read_block
[function]
[call site]
00713
cram_free_container
[function]
[call site]
00714
cram_free_block
[function]
[call site]
00715
cram_free_container
[function]
[call site]
00716
hread
[function]
[call site]
00717
cram_free_container
[function]
[call site]
00718
cram_free_container
[function]
[call site]
00719
sam_hdr_init
[function]
[call site]
00720
calloc
[call site]
00721
sam_hdr_add_lines
[function]
[call site]
00722
sam_hdr_fill_hrecs
[function]
[call site]
00723
sam_hrecs_new
[function]
[call site]
00724
calloc
[call site]
00725
kh_init_sam_hrecs_t
[function]
[call site]
00726
calloc
[call site]
00727
kh_init_m_s2i
[function]
[call site]
00728
calloc
[call site]
00729
kh_init_m_s2i
[function]
[call site]
00730
kh_init_m_s2i
[function]
[call site]
00731
pool_create
[function]
[call site]
00732
next_power_2
[function]
[call site]
00733
pool_create
[function]
[call site]
00734
string_pool_create
[function]
[call site]
00735
sam_hrecs_init_type_order
[function]
[call site]
00736
calloc
[call site]
00737
kh_destroy_sam_hrecs_t
[function]
[call site]
00738
pool_destroy
[function]
[call site]
00739
pool_destroy
[function]
[call site]
00740
string_pool_destroy
[function]
[call site]
00741
sam_hrecs_refs_from_targets_array
[function]
[call site]
00742
hts_log
[function]
[call site]
00743
hts_realloc_p
[function]
[call site]
00744
hts_prod_sat2
[function]
[call site]
00745
hts_realloc
[function]
[call site]
00746
__errno_location
[call site]
00747
realloc
[call site]
00748
kh_grow_to_fit_m_s2i
[function]
[call site]
00749
kh_resize_m_s2i
[function]
[call site]
00750
__errno_location
[call site]
00751
__ac_FNV1a_hash_string
[function]
[call site]
00752
string_dup
[function]
[call site]
00753
strlen
[call site]
00754
string_ndup
[function]
[call site]
00755
string_alloc
[function]
[call site]
00756
new_string_pool
[function]
[call site]
00757
hts_realloc_p
[function]
[call site]
00758
hts_prod_sat2
[function]
[call site]
00759
hts_realloc
[function]
[call site]
00760
hts_malloc
[function]
[call site]
00761
kh_get_s2i
[function]
[call site]
00762
__ac_FNV1a_hash_string
[function]
[call site]
00763
strcmp
[call site]
00764
kh_put_m_s2i
[function]
[call site]
00765
strcmp
[call site]
00766
hts_log
[function]
[call site]
00767
__errno_location
[call site]
00768
strerror
[call site]
00769
hts_log
[function]
[call site]
00770
kh_get_m_s2i
[function]
[call site]
00771
kh_del_m_s2i
[function]
[call site]
00772
sam_hrecs_free
[function]
[call site]
00773
kh_destroy_sam_hrecs_t
[function]
[call site]
00774
kh_destroy_m_s2i
[function]
[call site]
00775
kh_destroy_m_s2i
[function]
[call site]
00776
kh_destroy_m_s2i
[function]
[call site]
00777
pool_destroy
[function]
[call site]
00778
pool_destroy
[function]
[call site]
00779
string_pool_destroy
[function]
[call site]
00780
sam_hrecs_parse_lines
[function]
[call site]
00781
strlen
[call site]
00782
sam_hrecs_error
[function]
[call site]
00783
hts_log
[function]
[call site]
00784
sam_hrecs_parse_single_line
[function]
[call site]
00785
sam_hrecs_error
[function]
[call site]
00786
isalpha_c
[function]
[call site]
00787
__ctype_b_loc
[call site]
00788
sam_hrecs_error
[function]
[call site]
00789
TYPEKEY
[function]
[call site]
00790
pool_alloc
[function]
[call site]
00791
new_pool
[function]
[call site]
00792
hts_realloc_ps
[function]
[call site]
00793
hts_add_sat2
[function]
[call site]
00794
hts_prod_sat2
[function]
[call site]
00795
hts_realloc
[function]
[call site]
00796
hts_malloc_p
[function]
[call site]
00797
kh_put_sam_hrecs_t
[function]
[call site]
00798
kh_resize_sam_hrecs_t
[function]
[call site]
00799
realloc
[call site]
00800
TYPEKEY
[function]
[call site]
00801
parse_comment_line
[function]
[call site]
00802
sam_hrecs_error
[function]
[call site]
00803
warn_if_known_stderr
[function]
[call site]
00804
kmemmem
[function]
[call site]
00805
boyer_moore
[function]
[call site]
00806
memchr
[call site]
00807
ksBM_prep
[function]
[call site]
00808
hts_calloc_ps
[function]
[call site]
00809
hts_add_sat2
[function]
[call site]
00810
hts_calloc
[function]
[call site]
00811
__errno_location
[call site]
00812
calloc
[call site]
00813
calloc
[call site]
00814
karp_rabin
[function]
[call site]
00815
fast_exp
[function]
[call site]
00816
memcmp
[call site]
00817
known_stderr
[function]
[call site]
00818
hts_log
[function]
[call site]
00819
hts_log
[function]
[call site]
00820
kmemmem
[function]
[call site]
00821
known_stderr
[function]
[call site]
00822
kmemmem
[function]
[call site]
00823
known_stderr
[function]
[call site]
00824
pool_alloc
[function]
[call site]
00825
string_ndup
[function]
[call site]
00826
parse_noncomment_line
[function]
[call site]
00827
TYPEKEY
[function]
[call site]
00828
sam_hrecs_error
[function]
[call site]
00829
warn_if_known_stderr
[function]
[call site]
00830
sam_hrecs_error
[function]
[call site]
00831
warn_if_known_stderr
[function]
[call site]
00832
pool_alloc
[function]
[call site]
00833
string_ndup
[function]
[call site]
00834
sam_hrecs_global_list_add
[function]
[call site]
00835
TYPEKEY
[function]
[call site]
00836
__assert_fail
[call site]
00837
sam_hrecs_free_tags
[function]
[call site]
00838
sam_hrecs_free_tags
[function]
[call site]
00839
pool_free
[function]
[call site]
00840
pool_free
[function]
[call site]
00841
TYPEKEY
[function]
[call site]
00842
kh_grow_to_fit_m_s2i
[function]
[call site]
00843
hts_realloc_p
[function]
[call site]
00844
sam_hrecs_update_hashes
[function]
[call site]
00845
TYPEKEY
[function]
[call site]
00846
__assert_fail
[call site]
00847
__assert_fail
[call site]
00848
strtoll
[call site]
00849
__assert_fail
[call site]
00850
hts_log
[function]
[call site]
00851
hts_log
[function]
[call site]
00852
hts_log
[function]
[call site]
00853
kh_get_m_s2i
[function]
[call site]
00854
snprintf
[call site]
00855
sam_hrecs_update
[function]
[call site]
00856
sam_hrecs_vupdate
[function]
[call site]
00857
sam_hrecs_find_key
[function]
[call site]
00858
pool_alloc
[function]
[call site]
00859
strlen
[call site]
00860
hts_add_sat2
[function]
[call site]
00861
string_alloc
[function]
[call site]
00862
snprintf
[call site]
00863
sam_hrecs_add_ref_altnames
[function]
[call site]
00864
kstrtok
[function]
[call site]
00865
strchr
[call site]
00866
strlen
[call site]
00867
string_ndup
[function]
[call site]
00868
kh_put_m_s2i
[function]
[call site]
00869
hts_log
[function]
[call site]
00870
strcmp
[call site]
00871
sam_hrecs_add_ref_altnames
[function]
[call site]
00872
strcmp
[call site]
00873
hts_log
[function]
[call site]
00874
hts_log
[function]
[call site]
00875
hts_realloc_p
[function]
[call site]
00876
kh_put_m_s2i
[function]
[call site]
00877
sam_hrecs_add_ref_altnames
[function]
[call site]
00878
TYPEKEY
[function]
[call site]
00879
sam_hrecs_find_key
[function]
[call site]
00880
hts_log
[function]
[call site]
00881
__assert_fail
[call site]
00882
kh_get_m_s2i
[function]
[call site]
00883
__assert_fail
[call site]
00884
hts_log
[function]
[call site]
00885
hts_realloc_p
[function]
[call site]
00886
kh_put_m_s2i
[function]
[call site]
00887
TYPEKEY
[function]
[call site]
00888
hts_realloc_p
[function]
[call site]
00889
__assert_fail
[call site]
00890
hts_log
[function]
[call site]
00891
kh_get_m_s2i
[function]
[call site]
00892
kh_put_m_s2i
[function]
[call site]
00893
hts_realloc_p
[function]
[call site]
00894
sam_hrecs_free
[function]
[call site]
00895
add_stub_ref_sq_lines
[function]
[call site]
00896
snprintf
[call site]
00897
sam_hrecs_add
[function]
[call site]
00898
sam_hrecs_vadd
[function]
[call site]
00899
TYPEKEY
[function]
[call site]
00900
strncmp
[call site]
00901
sam_hrecs_find_type_id
[function]
[call site]
00902
kh_get_m_s2i
[function]
[call site]
00903
kh_get_m_s2i
[function]
[call site]
00904
kh_get_m_s2i
[function]
[call site]
00905
TYPEKEY
[function]
[call site]
00906
kh_get_sam_hrecs_t
[function]
[call site]
00907
sam_hrecs_vupdate
[function]
[call site]
00908
pool_alloc
[function]
[call site]
00909
kh_put_sam_hrecs_t
[function]
[call site]
00910
__assert_fail
[call site]
00911
sam_hrecs_global_list_add
[function]
[call site]
00912
__assert_fail
[call site]
00913
__assert_fail
[call site]
00914
__assert_fail
[call site]
00915
__assert_fail
[call site]
00916
strncmp
[call site]
00917
pool_alloc
[function]
[call site]
00918
strncmp
[call site]
00919
strlen
[call site]
00920
hts_add_sat2
[function]
[call site]
00921
string_alloc
[function]
[call site]
00922
snprintf
[call site]
00923
strlen
[call site]
00924
string_ndup
[function]
[call site]
00925
strncmp
[call site]
00926
pool_alloc
[function]
[call site]
00927
strncmp
[call site]
00928
strlen
[call site]
00929
hts_add_sat2
[function]
[call site]
00930
string_alloc
[function]
[call site]
00931
snprintf
[call site]
00932
strlen
[call site]
00933
string_ndup
[function]
[call site]
00934
TYPEKEY
[function]
[call site]
00935
sam_hrecs_update_hashes
[function]
[call site]
00936
strncmp
[call site]
00937
hts_log
[function]
[call site]
00938
sam_hrecs_free
[function]
[call site]
00939
rebuild_target_arrays
[function]
[call site]
00940
sam_hdr_update_target_arrays
[function]
[call site]
00941
hts_realloc_p
[function]
[call site]
00942
hts_realloc_p
[function]
[call site]
00943
strcmp
[call site]
00944
strdup
[call site]
00945
kh_get_s2i
[function]
[call site]
00946
kh_del_s2i
[function]
[call site]
00947
kh_init_s2i
[function]
[call site]
00948
calloc
[call site]
00949
kh_put_s2i
[function]
[call site]
00950
kh_resize_s2i
[function]
[call site]
00951
__errno_location
[call site]
00952
realloc
[call site]
00953
kh_get_s2i
[function]
[call site]
00954
kh_del_s2i
[function]
[call site]
00955
sam_hrecs_parse_lines
[function]
[call site]
00956
rebuild_target_arrays
[function]
[call site]
00957
redact_header_text
[function]
[call site]
00958
__assert_fail
[call site]
00959
sam_hdr_destroy
[function]
[call site]
00960
sam_hrecs_free
[function]
[call site]
00961
kh_destroy_s2i
[function]
[call site]
00962
cram_free_file_def
[function]
[call site]
00963
calloc
[call site]
00964
strncpy
[call site]
00965
cram_init_tables
[function]
[call site]
00966
strrchr
[call site]
00967
strdup
[call site]
00968
refs_create
[function]
[call site]
00969
calloc
[call site]
00970
string_pool_create
[function]
[call site]
00971
kh_init_refs
[function]
[call site]
00972
calloc
[call site]
00973
pthread_mutex_init
[call site]
00974
refs_free
[function]
[call site]
00975
string_pool_destroy
[function]
[call site]
00976
ref_entry_free_seq
[function]
[call site]
00977
mfclose
[function]
[call site]
00978
mfflush
[function]
[call site]
00979
fwrite
[call site]
00980
fflush
[call site]
00981
fseek
[call site]
00982
fwrite
[call site]
00983
fflush
[call site]
00984
ftell
[call site]
00985
fileno
[call site]
00986
ftell
[call site]
00987
ftruncate
[call site]
00988
munmap
[call site]
00989
fclose
[call site]
00990
mfdestroy
[function]
[call site]
00991
kh_destroy_refs
[function]
[call site]
00992
bgzf_close
[function]
[call site]
00993
bgzf_flush
[function]
[call site]
00994
mt_queue
[function]
[call site]
00995
pthread_mutex_lock
[call site]
00996
pool_alloc
[function]
[call site]
00997
pthread_mutex_unlock
[call site]
00998
hts_tpool_dispatch3
[function]
[call site]
00999
pthread_mutex_lock
[call site]
01000
pthread_mutex_unlock
[call site]
01001
__errno_location
[call site]
01002
pthread_mutex_unlock
[call site]
01003
pthread_cond_wait
[call site]
01004
pthread_mutex_unlock
[call site]
01005
wake_next_worker
[function]
[call site]
01006
pthread_mutex_lock
[call site]
01007
__assert_fail
[call site]
01008
__assert_fail
[call site]
01009
pthread_cond_signal
[call site]
01010
pthread_mutex_unlock
[call site]
01011
pthread_mutex_unlock
[call site]
01012
bgzf_encode_level0_func
[function]
[call site]
01013
u16_to_le
[function]
[call site]
01014
u16_to_le
[function]
[call site]
01015
u16_to_le
[function]
[call site]
01016
hts_crc32
[function]
[call site]
01017
crc32
[call site]
01018
u32_to_le
[function]
[call site]
01019
u32_to_le
[function]
[call site]
01020
job_cleanup
[function]
[call site]
01021
pthread_mutex_lock
[call site]
01022
pool_free
[function]
[call site]
01023
pthread_mutex_unlock
[call site]
01024
hts_tpool_dispatch3
[function]
[call site]
01025
bgzf_encode_func
[function]
[call site]
01026
bgzf_compress
[function]
[call site]
01027
u16_to_le
[function]
[call site]
01028
u16_to_le
[function]
[call site]
01029
deflateInit2_
[call site]
01030
bgzf_zerr
[function]
[call site]
01031
hts_log
[function]
[call site]
01032
deflate
[call site]
01033
deflateEnd
[call site]
01034
bgzf_zerr
[function]
[call site]
01035
hts_log
[function]
[call site]
01036
deflateEnd
[call site]
01037
deflateEnd
[call site]
01038
bgzf_zerr
[function]
[call site]
01039
hts_log
[function]
[call site]
01040
packInt16
[function]
[call site]
01041
crc32
[call site]
01042
packInt32
[function]
[call site]
01043
packInt32
[function]
[call site]
01044
job_cleanup
[function]
[call site]
01045
job_cleanup
[function]
[call site]
01046
pthread_mutex_lock
[call site]
01047
pthread_mutex_unlock
[call site]
01048
mt_flush_queue
[function]
[call site]
01049
pthread_mutex_lock
[call site]
01050
hts_tpool_process_is_shutdown
[function]
[call site]
01051
pthread_mutex_lock
[call site]
01052
pthread_mutex_unlock
[call site]
01053
pthread_mutex_unlock
[call site]
01054
hts_usleep
[function]
[call site]
01055
nanosleep
[call site]
01056
pthread_mutex_lock
[call site]
01057
pthread_mutex_unlock
[call site]
01058
hts_tpool_process_flush
[function]
[call site]
01059
pthread_mutex_lock
[call site]
01060
pthread_cond_signal
[call site]
01061
pthread_cond_wait
[call site]
01062
gettimeofday
[call site]
01063
pthread_cond_timedwait
[call site]
01064
gettimeofday
[call site]
01065
pthread_cond_timedwait
[call site]
01066
pthread_mutex_unlock
[call site]
01067
pthread_mutex_lock
[call site]
01068
pthread_mutex_unlock
[call site]
01069
hflush
[function]
[call site]
01070
flush_buffer
[function]
[call site]
01071
__errno_location
[call site]
01072
bgzf_index_add_block
[function]
[call site]
01073
bgzf_index_grow
[function]
[call site]
01074
hts_realloc_p
[function]
[call site]
01075
deflate_block
[function]
[call site]
01076
bgzf_compress
[function]
[call site]
01077
bgzf_gzip_compress
[function]
[call site]
01078
deflate
[call site]
01079
bgzf_zerr
[function]
[call site]
01080
hts_log
[function]
[call site]
01081
hts_log
[function]
[call site]
01082
hts_log
[function]
[call site]
01083
bgzf_zerr
[function]
[call site]
01084
hts_log
[function]
[call site]
01085
hwrite
[function]
[call site]
01086
hfile_set_blksize
[function]
[call site]
01087
realloc
[call site]
01088
hwrite2
[function]
[call site]
01089
flush_buffer
[function]
[call site]
01090
__errno_location
[call site]
01091
hwrite2
[function]
[call site]
01092
hts_log
[function]
[call site]
01093
bgzf_close_mt
[function]
[call site]
01094
mt_destroy
[function]
[call site]
01095
pthread_mutex_lock
[call site]
01096
pthread_cond_signal
[call site]
01097
hts_tpool_wake_dispatch
[function]
[call site]
01098
pthread_mutex_lock
[call site]
01099
pthread_cond_signal
[call site]
01100
pthread_mutex_unlock
[call site]
01101
pthread_mutex_unlock
[call site]
01102
hts_tpool_process_is_shutdown
[function]
[call site]
01103
hts_tpool_process_destroy
[function]
[call site]
01104
pthread_mutex_lock
[call site]
01105
pthread_mutex_unlock
[call site]
01106
hts_tpool_process_reset
[function]
[call site]
01107
pthread_mutex_lock
[call site]
01108
pthread_mutex_unlock
[call site]
01109
hts_tpool_delete_result
[function]
[call site]
01110
hts_tpool_process_flush
[function]
[call site]
01111
pthread_mutex_lock
[call site]
01112
pthread_cond_signal
[call site]
01113
pthread_mutex_unlock
[call site]
01114
hts_tpool_delete_result
[function]
[call site]
01115
pthread_mutex_lock
[call site]
01116
hts_tpool_process_detach_locked
[function]
[call site]
01117
hts_tpool_process_shutdown_locked
[function]
[call site]
01118
pthread_cond_broadcast
[call site]
01119
pthread_cond_broadcast
[call site]
01120
pthread_cond_broadcast
[call site]
01121
pthread_cond_broadcast
[call site]
01122
pthread_mutex_unlock
[call site]
01123
pthread_cond_destroy
[call site]
01124
pthread_cond_destroy
[call site]
01125
pthread_cond_destroy
[call site]
01126
pthread_cond_destroy
[call site]
01127
pthread_mutex_unlock
[call site]
01128
pthread_join
[call site]
01129
pthread_mutex_destroy
[call site]
01130
pthread_mutex_destroy
[call site]
01131
pthread_mutex_destroy
[call site]
01132
pthread_cond_destroy
[call site]
01133
pool_free
[function]
[call site]
01134
hts_tpool_destroy
[function]
[call site]
01135
pthread_mutex_lock
[call site]
01136
pthread_cond_signal
[call site]
01137
pthread_mutex_unlock
[call site]
01138
pthread_join
[call site]
01139
pthread_mutex_destroy
[call site]
01140
pthread_cond_destroy
[call site]
01141
pool_destroy
[function]
[call site]
01142
fflush
[call site]
01143
deflate_block
[function]
[call site]
01144
bgzf_zerr
[function]
[call site]
01145
hts_log
[function]
[call site]
01146
bgzf_close_mt
[function]
[call site]
01147
hwrite
[function]
[call site]
01148
hflush
[function]
[call site]
01149
hts_log
[function]
[call site]
01150
bgzf_close_mt
[function]
[call site]
01151
inflateEnd
[call site]
01152
deflateEnd
[call site]
01153
bgzf_zerr
[function]
[call site]
01154
hts_log
[function]
[call site]
01155
hclose
[function]
[call site]
01156
writebuffer_is_nonempty
[function]
[call site]
01157
hflush
[function]
[call site]
01158
__errno_location
[call site]
01159
hfile_destroy
[function]
[call site]
01160
__errno_location
[call site]
01161
bgzf_index_destroy
[function]
[call site]
01162
free_cache
[function]
[call site]
01163
kh_destroy_bgzf_cache
[function]
[call site]
01164
bgzf_clear_private_data
[function]
[call site]
01165
__assert_fail
[call site]
01166
pthread_mutex_destroy
[call site]
01167
pthread_mutex_init
[call site]
01168
pthread_mutex_init
[call site]
01169
pthread_mutex_init
[call site]
01170
pthread_mutex_init
[call site]
01171
cram_new_metrics
[function]
[call site]
01172
calloc
[call site]
01173
kh_init_m_metrics
[function]
[call site]
01174
calloc
[call site]
01175
refs_from_header
[function]
[call site]
01176
sam_hdr_fill_hrecs
[function]
[call site]
01177
hts_realloc_ps
[function]
[call site]
01178
kh_get_refs
[function]
[call site]
01179
__ac_FNV1a_hash_string
[function]
[call site]
01180
strcmp
[call site]
01181
calloc
[call site]
01182
string_dup
[function]
[call site]
01183
sam_hrecs_find_type_id
[function]
[call site]
01184
sam_hrecs_find_key
[function]
[call site]
01185
string_dup
[function]
[call site]
01186
sam_hrecs_find_key
[function]
[call site]
01187
strtoll
[call site]
01188
kh_put_refs
[function]
[call site]
01189
kh_resize_refs
[function]
[call site]
01190
__errno_location
[call site]
01191
realloc
[call site]
01192
cram_set_option
[function]
[call site]
01193
cram_set_voption
[function]
[call site]
01194
__errno_location
[call site]
01195
__errno_location
[call site]
01196
strdup
[call site]
01197
__errno_location
[call site]
01198
__errno_location
[call site]
01199
__errno_location
[call site]
01200
__errno_location
[call site]
01201
__errno_location
[call site]
01202
__errno_location
[call site]
01203
__errno_location
[call site]
01204
__errno_location
[call site]
01205
__errno_location
[call site]
01206
__errno_location
[call site]
01207
__errno_location
[call site]
01208
__errno_location
[call site]
01209
__errno_location
[call site]
01210
__errno_location
[call site]
01211
refs_free
[function]
[call site]
01212
cram_seek_to_refpos
[function]
[call site]
01213
cram_index_query
[function]
[call site]
01214
cram_seek
[function]
[call site]
01215
cram_drain_rqueue
[function]
[call site]
01216
hts_tpool_process_empty
[function]
[call site]
01217
pthread_mutex_lock
[call site]
01218
pthread_mutex_unlock
[call site]
01219
hts_tpool_next_result_wait
[function]
[call site]
01220
pthread_mutex_lock
[call site]
01221
hts_tpool_next_result_locked
[function]
[call site]
01222
pthread_cond_signal
[call site]
01223
wake_next_worker
[function]
[call site]
01224
gettimeofday
[call site]
01225
pthread_mutex_unlock
[call site]
01226
hts_tpool_process_destroy
[function]
[call site]
01227
pthread_cond_timedwait
[call site]
01228
pthread_mutex_unlock
[call site]
01229
hts_tpool_result_data
[function]
[call site]
01230
cram_free_container
[function]
[call site]
01231
cram_free_slice
[function]
[call site]
01232
hts_tpool_delete_result
[function]
[call site]
01233
cram_free_container
[function]
[call site]
01234
cram_free_slice
[function]
[call site]
01235
cram_free_container
[function]
[call site]
01236
hseek
[function]
[call site]
01237
pthread_mutex_lock
[call site]
01238
pthread_mutex_unlock
[call site]
01239
cram_free_container
[function]
[call site]
01240
cram_free_container
[function]
[call site]
01241
pthread_mutex_lock
[call site]
01242
pthread_mutex_unlock
[call site]
01243
pthread_mutex_lock
[call site]
01244
pthread_mutex_unlock
[call site]
01245
pthread_mutex_lock
[call site]
01246
pthread_mutex_unlock
[call site]
01247
cram_load_reference
[function]
[call site]
01248
refs_load_fai
[function]
[call site]
01249
strlen
[call site]
01250
refs_create
[function]
[call site]
01251
bgzf_close
[function]
[call site]
01252
strstr
[call site]
01253
string_ndup
[function]
[call site]
01254
snprintf
[call site]
01255
strcmp
[call site]
01256
string_ndup
[function]
[call site]
01257
snprintf
[call site]
01258
string_dup
[function]
[call site]
01259
snprintf
[call site]
01260
bgzf_open_ref
[function]
[call site]
01261
strncmp
[call site]
01262
hisremote
[function]
[call site]
01263
find_scheme_handler
[function]
[call site]
01264
snprintf
[call site]
01265
access
[call site]
01266
fai_build
[function]
[call site]
01267
fai_build3
[function]
[call site]
01268
fai_build3_core
[function]
[call site]
01269
bgzf_open
[function]
[call site]
01270
strchr
[call site]
01271
hopen
[function]
[call site]
01272
bgzf_read_init
[function]
[call site]
01273
hclose_abruptly
[function]
[call site]
01274
strchr
[call site]
01275
hopen
[function]
[call site]
01276
bgzf_write_init
[function]
[call site]
01277
__errno_location
[call site]
01278
ed_is_big
[function]
[call site]
01279
__errno_location
[call site]
01280
strerror
[call site]
01281
hts_log
[function]
[call site]
01282
bgzf_index_build_init
[function]
[call site]
01283
bgzf_index_destroy
[function]
[call site]
01284
calloc
[call site]
01285
hts_log
[function]
[call site]
01286
fai_build_core
[function]
[call site]
01287
calloc
[call site]
01288
kh_init_s
[function]
[call site]
01289
bgzf_getc_
[function]
[call site]
01290
bgzf_getc
[function]
[call site]
01291
bgzf_read_block
[function]
[call site]
01292
hts_tpool_next_result_wait
[function]
[call site]
01293
hts_tpool_result_data
[function]
[call site]
01294
hts_malloc_p
[function]
[call site]
01295
mt_destroy
[function]
[call site]
01296
hts_log
[function]
[call site]
01297
hts_tpool_delete_result
[function]
[call site]
01298
hts_log
[function]
[call site]
01299
hts_tpool_delete_result
[function]
[call site]
01300
bgzf_index_add_block
[function]
[call site]
01301
hts_tpool_delete_result
[function]
[call site]
01302
pthread_mutex_lock
[call site]
01303
pool_free
[function]
[call site]
01304
pthread_mutex_unlock
[call site]
01305
hts_tpool_delete_result
[function]
[call site]
01306
bgzf_htell
[function]
[call site]
01307
pthread_mutex_lock
[call site]
01308
pthread_mutex_unlock
[call site]
01309
htell
[function]
[call site]
01310
hread
[function]
[call site]
01311
__errno_location
[call site]
01312
strerror
[call site]
01313
hts_log
[function]
[call site]
01314
inflate_gzip_block
[function]
[call site]
01315
hread
[function]
[call site]
01316
inflate
[call site]
01317
bgzf_zerr
[function]
[call site]
01318
hts_log
[function]
[call site]
01319
hpeek
[function]
[call site]
01320
inflateReset
[call site]
01321
bgzf_zerr
[function]
[call site]
01322
hts_log
[function]
[call site]
01323
hts_log
[function]
[call site]
01324
hts_log
[function]
[call site]
01325
load_block_from_cache
[function]
[call site]
01326
kh_get_bgzf_cache
[function]
[call site]
01327
hseek
[function]
[call site]
01328
hts_log
[function]
[call site]
01329
exit
[call site]
01330
hread
[function]
[call site]
01331
hts_log
[function]
[call site]
01332
check_header
[function]
[call site]
01333
unpackInt16
[function]
[call site]
01334
unpackInt16
[function]
[call site]
01335
hts_log
[function]
[call site]
01336
hread
[function]
[call site]
01337
calloc
[call site]
01338
inflateInit2_
[call site]
01339
bgzf_zerr
[function]
[call site]
01340
inflate_gzip_block
[function]
[call site]
01341
hts_log
[function]
[call site]
01342
unpackInt16
[function]
[call site]
01343
hts_log
[function]
[call site]
01344
hread
[function]
[call site]
01345
hts_log
[function]
[call site]
01346
inflate_block
[function]
[call site]
01347
le_to_u32
[function]
[call site]
01348
bgzf_uncompress
[function]
[call site]
01349
inflateInit2_
[call site]
01350
bgzf_zerr
[function]
[call site]
01351
hts_log
[function]
[call site]
01352
inflate
[call site]
01353
bgzf_zerr
[function]
[call site]
01354
hts_log
[function]
[call site]
01355
inflateEnd
[call site]
01356
bgzf_zerr
[function]
[call site]
01357
hts_log
[function]
[call site]
01358
inflateEnd
[call site]
01359
bgzf_zerr
[function]
[call site]
01360
hts_log
[function]
[call site]
01361
crc32
[call site]
01362
hts_log
[function]
[call site]
01363
bgzf_zerr
[function]
[call site]
01364
hts_log
[function]
[call site]
01365
bgzf_htell
[function]
[call site]
01366
bgzf_index_add_block
[function]
[call site]
01367
cache_block
[function]
[call site]
01368
kh_del_bgzf_cache
[function]
[call site]
01369
kh_put_bgzf_cache
[function]
[call site]
01370
kh_resize_bgzf_cache
[function]
[call site]
01371
__errno_location
[call site]
01372
realloc
[call site]
01373
bgzf_htell
[function]
[call site]
01374
hts_log
[function]
[call site]
01375
hts_log
[function]
[call site]
01376
bgzf_getc_
[function]
[call site]
01377
hts_log
[function]
[call site]
01378
__ctype_b_loc
[call site]
01379
hts_log
[function]
[call site]
01380
fai_insert_index
[function]
[call site]
01381
hts_log
[function]
[call site]
01382
hts_log
[function]
[call site]
01383
hts_log
[function]
[call site]
01384
hts_log
[function]
[call site]
01385
hts_realloc_p
[function]
[call site]
01386
hts_log
[function]
[call site]
01387
strdup
[call site]
01388
__errno_location
[call site]
01389
strerror
[call site]
01390
hts_log
[function]
[call site]
01391
kh_put_s
[function]
[call site]
01392
kh_resize_s
[function]
[call site]
01393
__ac_FNV1a_hash_string
[function]
[call site]
01394
__errno_location
[call site]
01395
strerror
[call site]
01396
hts_log
[function]
[call site]
01397
hts_log
[function]
[call site]
01398
__ctype_b_loc
[call site]
01399
kputc_
[function]
[call site]
01400
ks_resize
[function]
[call site]
01401
bgzf_getc_
[function]
[call site]
01402
kputsn
[function]
[call site]
01403
hts_log
[function]
[call site]
01404
bgzf_getc_
[function]
[call site]
01405
bgzf_utell
[function]
[call site]
01406
bgzf_getc_
[function]
[call site]
01407
bgzf_utell
[function]
[call site]
01408
hts_log
[function]
[call site]
01409
isgraph_
[function]
[call site]
01410
bgzf_getc_
[function]
[call site]
01411
hts_log
[function]
[call site]
01412
bgzf_getc_
[function]
[call site]
01413
bgzf_utell
[function]
[call site]
01414
hts_log
[function]
[call site]
01415
hts_log
[function]
[call site]
01416
isgraph_
[function]
[call site]
01417
bgzf_getc_
[function]
[call site]
01418
hts_log
[function]
[call site]
01419
hts_log
[function]
[call site]
01420
fai_insert_index
[function]
[call site]
01421
hts_log
[function]
[call site]
01422
fai_destroy
[function]
[call site]
01423
kh_destroy_s
[function]
[call site]
01424
bgzf_close
[function]
[call site]
01425
hts_log
[function]
[call site]
01426
ksprintf
[function]
[call site]
01427
ksprintf
[function]
[call site]
01428
bgzf_index_dump
[function]
[call site]
01429
hts_log
[function]
[call site]
01430
__errno_location
[call site]
01431
get_name_suffix
[function]
[call site]
01432
strlen
[call site]
01433
snprintf
[call site]
01434
hopen
[function]
[call site]
01435
bgzf_index_dump_hfile
[function]
[call site]
01436
hts_log
[function]
[call site]
01437
__errno_location
[call site]
01438
bgzf_flush
[function]
[call site]
01439
hwrite_uint64
[function]
[call site]
01440
ed_is_big
[function]
[call site]
01441
ed_swap_8
[function]
[call site]
01442
hwrite
[function]
[call site]
01443
hwrite_uint64
[function]
[call site]
01444
hwrite_uint64
[function]
[call site]
01445
__errno_location
[call site]
01446
strerror
[call site]
01447
hts_log
[function]
[call site]
01448
hclose
[function]
[call site]
01449
__errno_location
[call site]
01450
strerror
[call site]
01451
hts_log
[function]
[call site]
01452
hclose_abruptly
[function]
[call site]
01453
hts_log
[function]
[call site]
01454
bgzf_close
[function]
[call site]
01455
__errno_location
[call site]
01456
strerror
[call site]
01457
hts_log
[function]
[call site]
01458
hopen
[function]
[call site]
01459
__errno_location
[call site]
01460
strerror
[call site]
01461
hts_log
[function]
[call site]
01462
fai_save
[function]
[call site]
01463
kh_get_s
[function]
[call site]
01464
__assert_fail
[call site]
01465
snprintf
[call site]
01466
snprintf
[call site]
01467
hputs
[function]
[call site]
01468
strlen
[call site]
01469
hputs2
[function]
[call site]
01470
hwrite2
[function]
[call site]
01471
hputs
[function]
[call site]
01472
strerror
[call site]
01473
hts_log
[function]
[call site]
01474
hclose
[function]
[call site]
01475
__errno_location
[call site]
01476
strerror
[call site]
01477
hts_log
[function]
[call site]
01478
fai_destroy
[function]
[call site]
01479
__errno_location
[call site]
01480
bgzf_close
[function]
[call site]
01481
fai_destroy
[function]
[call site]
01482
__errno_location
[call site]
01483
bgzf_open
[function]
[call site]
01484
perror
[call site]
01485
bgzf_index_load
[function]
[call site]
01486
get_name_suffix
[function]
[call site]
01487
hopen
[function]
[call site]
01488
bgzf_index_load_hfile
[function]
[call site]
01489
calloc
[call site]
01490
hread_uint64
[function]
[call site]
01491
hread
[function]
[call site]
01492
ed_is_big
[function]
[call site]
01493
ed_swap_8p
[function]
[call site]
01494
hread_uint64
[function]
[call site]
01495
hread_uint64
[function]
[call site]
01496
__errno_location
[call site]
01497
strerror
[call site]
01498
hts_log
[function]
[call site]
01499
hclose
[function]
[call site]
01500
__errno_location
[call site]
01501
strerror
[call site]
01502
hts_log
[function]
[call site]
01503
hclose_abruptly
[function]
[call site]
01504
hts_log
[function]
[call site]
01505
bgzf_close
[function]
[call site]
01506
hts_log
[function]
[call site]
01507
hopen
[function]
[call site]
01508
hts_log
[function]
[call site]
01509
perror
[call site]
01510
hgets
[function]
[call site]
01511
__errno_location
[call site]
01512
hgetln
[function]
[call site]
01513
hgetdelim
[function]
[call site]
01514
__errno_location
[call site]
01515
writebuffer_is_nonempty
[function]
[call site]
01516
__errno_location
[call site]
01517
memchr
[call site]
01518
refill_buffer
[function]
[call site]
01519
isspace_c
[function]
[call site]
01520
string_dup
[function]
[call site]
01521
isspace_c
[function]
[call site]
01522
strtoll
[call site]
01523
isspace_c
[function]
[call site]
01524
strtoll
[call site]
01525
isspace_c
[function]
[call site]
01526
strtol
[call site]
01527
isspace_c
[function]
[call site]
01528
strtol
[call site]
01529
kh_put_refs
[function]
[call site]
01530
hts_realloc_p
[function]
[call site]
01531
hclose
[function]
[call site]
01532
hclose_abruptly
[function]
[call site]
01533
refs_free
[function]
[call site]
01534
sanitise_SQ_lines
[function]
[call site]
01535
kh_get_refs
[function]
[call site]
01536
strcmp
[call site]
01537
__assert_fail
[call site]
01538
hts_log
[function]
[call site]
01539
refs_free
[function]
[call site]
01540
refs_create
[function]
[call site]
01541
refs_from_header
[function]
[call site]
01542
refs2id
[function]
[call site]
01543
calloc
[call site]
01544
kh_get_refs
[function]
[call site]
01545
hts_log
[function]
[call site]
01546
__isoc99_sscanf
[call site]
01547
hts_log
[function]
[call site]
01548
hts_log
[function]
[call site]
01549
__errno_location
[call site]
01550
cram_init_tables
[function]
[call site]
01551
__errno_location
[call site]
01552
__errno_location
[call site]
01553
hts_tpool_init
[function]
[call site]
01554
hts_malloc_p
[function]
[call site]
01555
hts_malloc_p
[function]
[call site]
01556
pthread_mutexattr_init
[call site]
01557
pthread_mutexattr_settype
[call site]
01558
pthread_mutex_init
[call site]
01559
pthread_mutexattr_destroy
[call site]
01560
pthread_mutex_lock
[call site]
01561
pthread_attr_init
[call site]
01562
pthread_attr_getstacksize
[call site]
01563
pthread_attr_setstacksize
[call site]
01564
pthread_cond_init
[call site]
01565
pthread_create
[call site]
01566
tpool_worker
[function]
[call site]
01567
pthread_mutex_lock
[call site]
01568
__assert_fail
[call site]
01569
pthread_cond_wait
[call site]
01570
__assert_fail
[call site]
01571
pthread_cond_broadcast
[call site]
01572
pthread_cond_signal
[call site]
01573
pthread_mutex_unlock
[call site]
01574
hts_tpool_add_result
[function]
[call site]
01575
pthread_mutex_lock
[call site]
01576
pthread_cond_signal
[call site]
01577
pthread_mutex_unlock
[call site]
01578
pthread_mutex_unlock
[call site]
01579
hts_tpool_process_shutdown
[function]
[call site]
01580
pthread_mutex_lock
[call site]
01581
hts_tpool_process_shutdown_locked
[function]
[call site]
01582
pthread_mutex_unlock
[call site]
01583
__assert_fail
[call site]
01584
pthread_cond_broadcast
[call site]
01585
pthread_mutex_unlock
[call site]
01586
pthread_mutex_lock
[call site]
01587
hts_tpool_process_destroy
[function]
[call site]
01588
pthread_mutex_unlock
[call site]
01589
pthread_mutex_lock
[call site]
01590
hts_tpool_process_shutdown_locked
[function]
[call site]
01591
pthread_mutex_unlock
[call site]
01592
pthread_mutex_unlock
[call site]
01593
pthread_attr_destroy
[call site]
01594
__errno_location
[call site]
01595
__errno_location
[call site]
01596
strerror
[call site]
01597
pthread_mutex_unlock
[call site]
01598
pthread_join
[call site]
01599
pthread_cond_destroy
[call site]
01600
pthread_mutex_destroy
[call site]
01601
pthread_attr_destroy
[call site]
01602
__errno_location
[call site]
01603
hts_tpool_process_init
[function]
[call site]
01604
pthread_cond_init
[call site]
01605
pthread_cond_init
[call site]
01606
pthread_cond_init
[call site]
01607
pthread_cond_init
[call site]
01608
hts_tpool_process_attach
[function]
[call site]
01609
pthread_mutex_lock
[call site]
01610
__assert_fail
[call site]
01611
pthread_mutex_unlock
[call site]
01612
hts_tpool_size
[function]
[call site]
01613
hts_tpool_process_init
[function]
[call site]
01614
__errno_location
[call site]
01615
__errno_location
[call site]
01616
__errno_location
[call site]
01617
__errno_location
[call site]
01618
__errno_location
[call site]
01619
hts_log
[function]
[call site]
01620
__errno_location
[call site]
01621
bgzf_hopen
[function]
[call site]
01622
__errno_location
[call site]
01623
hts_process_opts
[function]
[call site]
01624
hts_parse_opt_list
[function]
[call site]
01625
strncpy
[call site]
01626
hts_opt_add
[function]
[call site]
01627
strdup
[call site]
01628
strchr
[call site]
01629
strcmp
[call site]
01630
strcmp
[call site]
01631
get_int
[function]
[call site]
01632
get_int_kmg
[function]
[call site]
01633
strtol
[call site]
01634
hts_log
[function]
[call site]
01635
hts_log
[function]
[call site]
01636
hts_log
[function]
[call site]
01637
strcmp
[call site]
01638
strcmp
[call site]
01639
get_int
[function]
[call site]
01640
strcmp
[call site]
01641
strcmp
[call site]
01642
get_int
[function]
[call site]
01643
strcmp
[call site]
01644
strcmp
[call site]
01645
get_int
[function]
[call site]
01646
strcmp
[call site]
01647
strcmp
[call site]
01648
get_int
[function]
[call site]
01649
strcmp
[call site]
01650
strcmp
[call site]
01651
get_int
[function]
[call site]
01652
strcmp
[call site]
01653
strcmp
[call site]
01654
get_int
[function]
[call site]
01655
strcmp
[call site]
01656
strcmp
[call site]
01657
get_int
[function]
[call site]
01658
strcmp
[call site]
01659
strcmp
[call site]
01660
get_int
[function]
[call site]
01661
strcmp
[call site]
01662
strcmp
[call site]
01663
get_int
[function]
[call site]
01664
strcmp
[call site]
01665
strcmp
[call site]
01666
get_int
[function]
[call site]
01667
strcmp
[call site]
01668
strcmp
[call site]
01669
get_int
[function]
[call site]
01670
strcmp
[call site]
01671
strcmp
[call site]
01672
get_int
[function]
[call site]
01673
strcmp
[call site]
01674
strcmp
[call site]
01675
get_int
[function]
[call site]
01676
strcmp
[call site]
01677
strcmp
[call site]
01678
get_int
[function]
[call site]
01679
strcmp
[call site]
01680
strcmp
[call site]
01681
strcmp
[call site]
01682
strcmp
[call site]
01683
strcmp
[call site]
01684
strcmp
[call site]
01685
strcmp
[call site]
01686
strcmp
[call site]
01687
strcmp
[call site]
01688
strcmp
[call site]
01689
strcmp
[call site]
01690
strcmp
[call site]
01691
strcmp
[call site]
01692
strcmp
[call site]
01693
atoi
[call site]
01694
get_int
[function]
[call site]
01695
strcmp
[call site]
01696
strcmp
[call site]
01697
get_int
[function]
[call site]
01698
strcmp
[call site]
01699
strcmp
[call site]
01700
get_int_kmg
[function]
[call site]
01701
strcmp
[call site]
01702
strcmp
[call site]
01703
get_int
[function]
[call site]
01704
strcmp
[call site]
01705
strcmp
[call site]
01706
get_int
[function]
[call site]
01707
strcmp
[call site]
01708
strcmp
[call site]
01709
strcmp
[call site]
01710
strcmp
[call site]
01711
get_int
[function]
[call site]
01712
strcmp
[call site]
01713
strcmp
[call site]
01714
get_int
[function]
[call site]
01715
strcmp
[call site]
01716
strcmp
[call site]
01717
get_int_kmg
[function]
[call site]
01718
strcmp
[call site]
01719
strcmp
[call site]
01720
get_int
[function]
[call site]
01721
strcmp
[call site]
01722
strcmp
[call site]
01723
strcmp
[call site]
01724
strcmp
[call site]
01725
strcmp
[call site]
01726
strcmp
[call site]
01727
strcmp
[call site]
01728
strcmp
[call site]
01729
strcmp
[call site]
01730
strcmp
[call site]
01731
strcmp
[call site]
01732
strcmp
[call site]
01733
strcmp
[call site]
01734
strcmp
[call site]
01735
strcmp
[call site]
01736
strcmp
[call site]
01737
strcmp
[call site]
01738
strcmp
[call site]
01739
get_int
[function]
[call site]
01740
hts_log
[function]
[call site]
01741
hts_opt_apply
[function]
[call site]
01742
strdup
[call site]
01743
hts_set_opt
[function]
[call site]
01744
hts_set_threads
[function]
[call site]
01745
sam_set_threads
[function]
[call site]
01746
hts_tpool_init
[function]
[call site]
01747
sam_set_thread_pool
[function]
[call site]
01748
sam_state_create
[function]
[call site]
01749
calloc
[call site]
01750
pthread_mutex_init
[call site]
01751
pthread_mutex_init
[call site]
01752
pthread_cond_init
[call site]
01753
hts_tpool_size
[function]
[call site]
01754
hts_tpool_process_init
[function]
[call site]
01755
sam_state_destroy
[function]
[call site]
01756
pthread_mutex_lock
[call site]
01757
pthread_cond_signal
[call site]
01758
hts_tpool_wake_dispatch
[function]
[call site]
01759
hts_tpool_wake_dispatch
[function]
[call site]
01760
pthread_mutex_unlock
[call site]
01761
hts_usleep
[function]
[call site]
01762
pthread_mutex_lock
[call site]
01763
pthread_mutex_unlock
[call site]
01764
hts_tpool_dispatch
[function]
[call site]
01765
hts_tpool_dispatch3
[function]
[call site]
01766
sam_format_worker
[function]
[call site]
01767
pthread_mutex_lock
[call site]
01768
pthread_mutex_unlock
[call site]
01769
calloc
[call site]
01770
sam_state_err
[function]
[call site]
01771
pthread_mutex_lock
[call site]
01772
pthread_mutex_unlock
[call site]
01773
sam_format1_append
[function]
[call site]
01774
kputsn_
[function]
[call site]
01775
__errno_location
[call site]
01776
ks_resize
[function]
[call site]
01777
kputc_
[function]
[call site]
01778
kputw
[function]
[call site]
01779
ks_resize
[function]
[call site]
01780
kputuw
[function]
[call site]
01781
ks_resize
[function]
[call site]
01782
ks_resize
[function]
[call site]
01783
kputc_
[function]
[call site]
01784
kputs
[function]
[call site]
01785
kputc_
[function]
[call site]
01786
kputsn_
[function]
[call site]
01787
kputll
[function]
[call site]
01788
ks_resize
[function]
[call site]
01789
kputuw
[function]
[call site]
01790
kputc_
[function]
[call site]
01791
kputw
[function]
[call site]
01792
kputc_
[function]
[call site]
01793
kputw
[function]
[call site]
01794
kputc_
[function]
[call site]
01795
kputc_
[function]
[call site]
01796
kputc_
[function]
[call site]
01797
kputsn_
[function]
[call site]
01798
kputsn_
[function]
[call site]
01799
kputs
[function]
[call site]
01800
kputc_
[function]
[call site]
01801
kputll
[function]
[call site]
01802
kputc_
[function]
[call site]
01803
kputll
[function]
[call site]
01804
kputc_
[function]
[call site]
01805
ks_resize
[function]
[call site]
01806
nibble2base
[function]
[call site]
01807
add33
[function]
[call site]
01808
kputsn_
[function]
[call site]
01809
kputc_
[function]
[call site]
01810
sam_format_aux1
[function]
[call site]
01811
kputsn_
[function]
[call site]
01812
kputc_
[function]
[call site]
01813
kputsn_
[function]
[call site]
01814
kputw
[function]
[call site]
01815
kputsn_
[function]
[call site]
01816
kputw
[function]
[call site]
01817
kputsn_
[function]
[call site]
01818
le_to_u16
[function]
[call site]
01819
kputuw
[function]
[call site]
01820
kputsn_
[function]
[call site]
01821
le_to_i16
[function]
[call site]
01822
le_to_u16
[function]
[call site]
01823
kputw
[function]
[call site]
01824
kputsn_
[function]
[call site]
01825
le_to_u32
[function]
[call site]
01826
kputuw
[function]
[call site]
01827
kputsn_
[function]
[call site]
01828
le_to_i32
[function]
[call site]
01829
le_to_u32
[function]
[call site]
01830
kputw
[function]
[call site]
01831
kputsn_
[function]
[call site]
01832
kputc
[function]
[call site]
01833
le_to_float
[function]
[call site]
01834
le_to_u32
[function]
[call site]
01835
ksprintf
[function]
[call site]
01836
le_to_double
[function]
[call site]
01837
le_to_u64
[function]
[call site]
01838
ksprintf
[function]
[call site]
01839
kputc_
[function]
[call site]
01840
kputc_
[function]
[call site]
01841
kputc_
[function]
[call site]
01842
kputsn
[function]
[call site]
01843
le_to_u32
[function]
[call site]
01844
kputsn_
[function]
[call site]
01845
kputc
[function]
[call site]
01846
ks_expand
[function]
[call site]
01847
__errno_location
[call site]
01848
ks_resize
[function]
[call site]
01849
kputw
[function]
[call site]
01850
ks_expand
[function]
[call site]
01851
kputuw
[function]
[call site]
01852
ks_expand
[function]
[call site]
01853
le_to_i16
[function]
[call site]
01854
kputw
[function]
[call site]
01855
ks_expand
[function]
[call site]
01856
le_to_u16
[function]
[call site]
01857
kputuw
[function]
[call site]
01858
ks_expand
[function]
[call site]
01859
le_to_i32
[function]
[call site]
01860
kputw
[function]
[call site]
01861
ks_expand
[function]
[call site]
01862
le_to_u32
[function]
[call site]
01863
kputuw
[function]
[call site]
01864
ks_expand
[function]
[call site]
01865
le_to_float
[function]
[call site]
01866
kputd
[function]
[call site]
01867
__errno_location
[call site]
01868
hts_log
[function]
[call site]
01869
__errno_location
[call site]
01870
kputsn
[function]
[call site]
01871
hts_log
[function]
[call site]
01872
__errno_location
[call site]
01873
hts_log
[function]
[call site]
01874
__errno_location
[call site]
01875
__errno_location
[call site]
01876
sam_state_err
[function]
[call site]
01877
kputc
[function]
[call site]
01878
pthread_mutex_lock
[call site]
01879
pthread_mutex_unlock
[call site]
01880
hts_tpool_process_flush
[function]
[call site]
01881
pthread_mutex_lock
[call site]
01882
pthread_mutex_unlock
[call site]
01883
hts_tpool_process_empty
[function]
[call site]
01884
hts_usleep
[function]
[call site]
01885
pthread_mutex_lock
[call site]
01886
hts_tpool_process_is_shutdown
[function]
[call site]
01887
pthread_mutex_unlock
[call site]
01888
hts_tpool_process_shutdown
[function]
[call site]
01889
pthread_join
[call site]
01890
hts_tpool_process_destroy
[function]
[call site]
01891
hts_tpool_destroy
[function]
[call site]
01892
pthread_mutex_destroy
[call site]
01893
pthread_mutex_destroy
[call site]
01894
pthread_cond_destroy
[call site]
01895
sam_free_sp_bams
[function]
[call site]
01896
sam_free_sp_bams
[function]
[call site]
01897
bam_hdr_destroy
[function]
[call site]
01898
sam_hdr_destroy
[function]
[call site]
01899
bgzf_thread_pool
[function]
[call site]
01900
calloc
[call site]
01901
hts_tpool_size
[function]
[call site]
01902
hts_tpool_process_init
[function]
[call site]
01903
hts_tpool_process_ref_incr
[function]
[call site]
01904
pthread_mutex_lock
[call site]
01905
pthread_mutex_unlock
[call site]
01906
pool_create
[function]
[call site]
01907
pthread_mutex_init
[call site]
01908
pthread_mutex_init
[call site]
01909
pthread_mutex_init
[call site]
01910
pthread_cond_init
[call site]
01911
pthread_create
[call site]
01912
hts_tpool_destroy
[function]
[call site]
01913
hts_get_bgzfp
[function]
[call site]
01914
bgzf_mt
[function]
[call site]
01915
hts_tpool_init
[function]
[call site]
01916
bgzf_thread_pool
[function]
[call site]
01917
hts_tpool_destroy
[function]
[call site]
01918
hts_set_opt
[function]
[call site]
01919
hts_hfile
[function]
[call site]
01920
bgzf_hfile
[function]
[call site]
01921
cram_hfile
[function]
[call site]
01922
bgzf_hfile
[function]
[call site]
01923
hfile_set_blksize
[function]
[call site]
01924
hts_log
[function]
[call site]
01925
hts_log
[function]
[call site]
01926
hts_set_thread_pool
[function]
[call site]
01927
sam_set_thread_pool
[function]
[call site]
01928
hts_get_bgzfp
[function]
[call site]
01929
bgzf_thread_pool
[function]
[call site]
01930
hts_set_opt
[function]
[call site]
01931
hts_set_cache_size
[function]
[call site]
01932
hts_get_bgzfp
[function]
[call site]
01933
bgzf_set_cache_size
[function]
[call site]
01934
fastq_state_set
[function]
[call site]
01935
fastq_state_init
[function]
[call site]
01936
strcmp
[call site]
01940
kh_init_tag
[function]
[call site]
01941
calloc
[call site]
01942
strlen
[call site]
01943
hts_log
[function]
[call site]
01944
kh_put_tag
[function]
[call site]
01945
kh_resize_tag
[function]
[call site]
01946
__errno_location
[call site]
01947
realloc
[call site]
01948
strncpy
[call site]
01949
strcmp
[call site]
01950
isalpha_c
[function]
[call site]
01951
isalnum_c
[function]
[call site]
01952
strncpy
[call site]
01953
hts_log
[function]
[call site]
01954
regfree
[call site]
01955
regcomp
[call site]
01956
hts_log
[function]
[call site]
01957
fastq_state_set
[function]
[call site]
01958
fastq_state_set
[function]
[call site]
01959
cram_set_option
[function]
[call site]
01960
hts_set_filter_expression
[function]
[call site]
01961
hts_filter_free
[function]
[call site]
01962
regfree
[call site]
01963
hts_filter_init
[function]
[call site]
01964
calloc
[call site]
01965
strlen
[call site]
01966
hts_malloc_ps
[function]
[call site]
01967
hts_add_sat2
[function]
[call site]
01968
hts_prod_sat2
[function]
[call site]
01969
hts_malloc
[function]
[call site]
01970
cram_set_voption
[function]
[call site]
01971
hts_set_opt
[function]
[call site]
01972
hts_opt_free
[function]
[call site]
01973
hts_opt_free
[function]
[call site]
01974
hclose_abruptly
[function]
[call site]
01975
hts_log
[function]
[call site]
01976
hclose_abruptly
[function]
[call site]
01977
hclose
[function]
[call site]
01978
abort
[call site]
01979
hts_close
[function]
[call site]
01980
__errno_location
[call site]
01981
bgzf_close
[function]
[call site]
01982
cram_eof
[function]
[call site]
01983
hts_log
[function]
[call site]
01984
cram_close
[function]
[call site]
01985
cram_update_curr_slice
[function]
[call site]
01986
cram_flush_container_mt
[function]
[call site]
01987
pthread_mutex_lock
[call site]
01988
reset_metrics
[function]
[call site]
01989
pthread_mutex_unlock
[call site]
01990
hts_tpool_process_flush
[function]
[call site]
01991
pthread_mutex_lock
[call site]
01992
pthread_mutex_unlock
[call site]
01993
cram_flush_container
[function]
[call site]
01994
cram_encode_container
[function]
[call site]
01995
pthread_mutex_lock
[call site]
01996
hts_log
[function]
[call site]
01997
hts_log
[function]
[call site]
01998
pthread_mutex_lock
[call site]
01999
pthread_mutex_unlock
[call site]
02000
cram_get_ref
[function]
[call site]
02001
pthread_mutex_lock
[call site]
02002
hts_log
[function]
[call site]
02003
pthread_mutex_unlock
[call site]
02004
pthread_mutex_lock
[call site]
02005
hts_log
[function]
[call site]
02006
cram_populate_ref
[function]
[call site]
02007
getenv
[call site]
02008
getenv
[call site]
02009
hts_log
[function]
[call site]
02010
sam_hrecs_find_type_id
[function]
[call site]
02011
sam_hrecs_find_key
[function]
[call site]
02012
hts_log
[function]
[call site]
02013
expand_cache_path
[function]
[call site]
02014
strchr
[call site]
02015
strncpy
[call site]
02016
strlen
[call site]
02017
strcpy
[call site]
02018
strtol
[call site]
02019
strlen
[call site]
02020
strncpy
[call site]
02021
strlen
[call site]
02022
strcpy
[call site]
02023
strlen
[call site]
02024
strcpy
[call site]
02025
stat
[call site]
02026
stat
[call site]
02027
bgzf_open
[function]
[call site]
02028
string_dup
[function]
[call site]
02029
bgzf_close
[function]
[call site]
02030
open_path_mfile
[function]
[call site]
02031
getenv
[call site]
02032
tokenise_search_path
[function]
[call site]
02033
strlen
[call site]
02034
strncmp
[call site]
02035
strncmp
[call site]
02036
strncmp
[call site]
02037
strncmp
[call site]
02038
strncmp
[call site]
02039
strncmp
[call site]
02040
strncmp
[call site]
02041
strncmp
[call site]
02042
strncmp
[call site]
02043
strncmp
[call site]
02044
find_file_url
[function]
[call site]
02045
expand_path
[function]
[call site]
02046
strlen
[call site]
02047
strlen
[call site]
02048
hts_log
[function]
[call site]
02049
strchr
[call site]
02050
strtol
[call site]
02051
hopen
[function]
[call site]
02052
__errno_location
[call site]
02053
__errno_location
[call site]
02054
strerror
[call site]
02055
hts_log
[function]
[call site]
02056
mfcreate
[function]
[call site]
02057
hread
[function]
[call site]
02058
mfwrite
[function]
[call site]
02059
realloc
[call site]
02060
hclose_abruptly
[function]
[call site]
02061
hclose
[function]
[call site]
02062
__errno_location
[call site]
02063
strerror
[call site]
02064
hts_log
[function]
[call site]
02065
mrewind
[function]
[call site]
02066
mfdestroy
[function]
[call site]
02067
strncmp
[call site]
02068
hisremote
[function]
[call site]
02069
find_file_url
[function]
[call site]
02070
find_file_dir
[function]
[call site]
02071
expand_path
[function]
[call site]
02072
is_file
[function]
[call site]
02073
stat
[call site]
02074
mfopen
[function]
[call site]
02075
fopen
[call site]
02076
mfreopen
[function]
[call site]
02077
strchr
[call site]
02078
strchr
[call site]
02079
strchr
[call site]
02080
strchr
[call site]
02081
strchr
[call site]
02082
strchr
[call site]
02083
strchr
[call site]
02084
mfcreate
[function]
[call site]
02085
mfmmap
[function]
[call site]
02086
mfload
[function]
[call site]
02090
stat
[call site]
02091
realloc
[call site]
02092
fread
[call site]
02093
feof
[call site]
02094
fseek
[call site]
02095
mfcreate
[function]
[call site]
02096
hts_log
[function]
[call site]
02097
fseek
[call site]
02098
strlen
[call site]
02099
strcpy
[call site]
02100
strrchr
[call site]
02101
find_file_dir
[function]
[call site]
02102
mfsteal
[function]
[call site]
02103
mfdetach
[function]
[call site]
02104
mfflush
[function]
[call site]
02105
fclose
[call site]
02106
mfdestroy
[function]
[call site]
02107
sam_hrecs_find_key
[function]
[call site]
02108
strstr
[call site]
02109
strncmp
[call site]
02110
hts_log
[function]
[call site]
02111
strncmp
[call site]
02112
bgzf_close
[function]
[call site]
02113
refs_load_fai
[function]
[call site]
02114
sanitise_SQ_lines
[function]
[call site]
02115
bgzf_close
[function]
[call site]
02116
refs2id
[function]
[call site]
02117
expand_cache_path
[function]
[call site]
02118
hts_log
[function]
[call site]
02119
mkdir_prefix
[function]
[call site]
02120
strrchr
[call site]
02121
is_directory
[function]
[call site]
02122
stat
[call site]
02123
mkdir
[call site]
02124
chmod
[call site]
02125
mkdir_prefix
[function]
[call site]
02126
mkdir
[call site]
02127
chmod
[call site]
02128
hts_open_tmpfile
[function]
[call site]
02129
getpid
[call site]
02130
time
[call site]
02131
clock
[call site]
02132
ks_clear
[function]
[call site]
02133
ksprintf
[function]
[call site]
02134
hopen
[function]
[call site]
02135
__errno_location
[call site]
02136
perror
[call site]
02137
hts_md5_init
[function]
[call site]
02138
hts_md5_reset
[function]
[call site]
02139
hclose_abruptly
[function]
[call site]
02140
unlink
[call site]
02141
hts_md5_update
[function]
[call site]
02142
body
[function]
[call site]
02143
body
[function]
[call site]
02144
hts_md5_final
[function]
[call site]
02145
body
[function]
[call site]
02146
body
[function]
[call site]
02147
hts_md5_destroy
[function]
[call site]
02148
hts_md5_hex
[function]
[call site]
02149
strncmp
[call site]
02150
hts_log
[function]
[call site]
02151
hclose_abruptly
[function]
[call site]
02152
unlink
[call site]
02153
hwrite
[function]
[call site]
02154
hclose
[function]
[call site]
02155
chmod
[call site]
02156
rename
[call site]
02157
__errno_location
[call site]
02158
strerror
[call site]
02159
hts_log
[function]
[call site]
02160
unlink
[call site]
02161
hts_log
[function]
[call site]
02162
hts_log
[function]
[call site]
02163
pthread_mutex_unlock
[call site]
02164
pthread_mutex_unlock
[call site]
02165
cram_ref_incr_locked
[function]
[call site]
02166
cram_ref_incr_locked
[function]
[call site]
02167
cram_ref_load
[function]
[call site]
02168
__assert_fail
[call site]
02169
__assert_fail
[call site]
02170
ref_entry_free_seq
[function]
[call site]
02171
strcmp
[call site]
02172
bgzf_close
[function]
[call site]
02173
bgzf_open_ref
[function]
[call site]
02174
load_ref_portion
[function]
[call site]
02175
bgzf_useek
[function]
[call site]
02176
hseek
[function]
[call site]
02177
bgzf_read_block
[function]
[call site]
02178
bgzf_seek_common
[function]
[call site]
02179
pthread_mutex_lock
[call site]
02180
pthread_cond_signal
[call site]
02181
hts_tpool_wake_dispatch
[function]
[call site]
02182
pthread_cond_wait
[call site]
02183
pthread_cond_signal
[call site]
02184
abort
[call site]
02185
__errno_location
[call site]
02186
pthread_mutex_unlock
[call site]
02187
pthread_mutex_unlock
[call site]
02188
hseek
[function]
[call site]
02189
bgzf_read_block
[function]
[call site]
02190
__assert_fail
[call site]
02191
perror
[call site]
02192
bgzf_read
[function]
[call site]
02193
__assert_fail
[call site]
02194
bgzf_read_block
[function]
[call site]
02195
hts_log
[function]
[call site]
02196
bgzf_htell
[function]
[call site]
02197
hts_log
[function]
[call site]
02198
bgzf_htell
[function]
[call site]
02199
perror
[call site]
02200
isspace_c
[function]
[call site]
02201
isspace_c
[function]
[call site]
02202
isspace_c
[function]
[call site]
02203
hts_log
[function]
[call site]
02204
toupper_c
[function]
[call site]
02205
toupper
[call site]
02206
pthread_mutex_unlock
[call site]
02207
pthread_mutex_unlock
[call site]
02208
cram_ref_incr_locked
[function]
[call site]
02209
pthread_mutex_unlock
[call site]
02210
pthread_mutex_unlock
[call site]
02211
pthread_mutex_unlock
[call site]
02212
pthread_mutex_unlock
[call site]
02213
strcmp
[call site]
02214
bgzf_close
[function]
[call site]
02215
bgzf_open_ref
[function]
[call site]
02216
pthread_mutex_unlock
[call site]
02217
pthread_mutex_unlock
[call site]
02218
load_ref_portion
[function]
[call site]
02219
pthread_mutex_unlock
[call site]
02220
pthread_mutex_unlock
[call site]
02221
pthread_mutex_unlock
[call site]
02222
pthread_mutex_unlock
[call site]
02223
hts_log
[function]
[call site]
02224
hts_log
[function]
[call site]
02225
pthread_mutex_lock
[call site]
02226
pthread_mutex_unlock
[call site]
02227
hts_log
[function]
[call site]
02228
hts_log
[function]
[call site]
02229
hts_log
[function]
[call site]
02230
hts_log
[function]
[call site]
02231
pthread_mutex_lock
[call site]
02232
pthread_mutex_unlock
[call site]
02233
validate_md5
[function]
[call site]
02234
sam_hrecs_find_type_id
[function]
[call site]
02235
sam_hrecs_find_key
[function]
[call site]
02236
hts_md5_init
[function]
[call site]
02237
hts_md5_update
[function]
[call site]
02238
hts_md5_final
[function]
[call site]
02239
hts_md5_destroy
[function]
[call site]
02240
hts_md5_hex
[function]
[call site]
02241
strcmp
[call site]
02242
hts_log
[function]
[call site]
02243
hts_log
[function]
[call site]
02244
cram_ref_incr
[function]
[call site]
02245
pthread_mutex_lock
[call site]
02246
cram_ref_incr_locked
[function]
[call site]
02247
pthread_mutex_unlock
[call site]
02248
cram_get_ref
[function]
[call site]
02249
validate_md5
[function]
[call site]
02250
hts_log
[function]
[call site]
02251
__assert_fail
[call site]
02252
lossy_read_names
[function]
[call site]
02253
kh_init_m_s2u64
[function]
[call site]
02254
calloc
[call site]
02255
expected_template_count
[function]
[call site]
02256
bam_aux_get
[function]
[call site]
02257
bam_aux_first
[function]
[call site]
02258
__errno_location
[call site]
02259
skip_aux
[function]
[call site]
02260
aux_type2size
[function]
[call site]
02261
memchr
[call site]
02262
aux_type2size
[function]
[call site]
02263
le_to_u32
[function]
[call site]
02264
bam_aux_next
[function]
[call site]
02265
skip_aux
[function]
[call site]
02266
__errno_location
[call site]
02267
hts_log
[function]
[call site]
02268
__errno_location
[call site]
02269
hts_log
[function]
[call site]
02270
__errno_location
[call site]
02271
bam_data_end
[function]
[call site]
02272
bam_aux2i_end
[function]
[call site]
02273
__errno_location
[call site]
02274
__errno_location
[call site]
02275
__errno_location
[call site]
02276
le_to_i16
[function]
[call site]
02277
le_to_u16
[function]
[call site]
02278
__errno_location
[call site]
02279
le_to_u16
[function]
[call site]
02280
__errno_location
[call site]
02281
le_to_i32
[function]
[call site]
02282
le_to_u32
[function]
[call site]
02283
__errno_location
[call site]
02284
le_to_u32
[function]
[call site]
02285
__errno_location
[call site]
02286
bam_aux_get
[function]
[call site]
02287
kh_put_m_s2u64
[function]
[call site]
02288
kh_resize_m_s2u64
[function]
[call site]
02289
__errno_location
[call site]
02290
realloc
[call site]
02291
__ac_FNV1a_hash_string
[function]
[call site]
02292
strcmp
[call site]
02293
kh_get_m_s2u64
[function]
[call site]
02294
kh_destroy_m_s2u64
[function]
[call site]
02295
cram_generate_reference
[function]
[call site]
02296
extend_ref
[function]
[call site]
02297
realloc
[call site]
02298
hts_realloc_p
[function]
[call site]
02299
hts_log
[function]
[call site]
02300
cram_add_to_ref
[function]
[call site]
02301
bam_aux_get
[function]
[call site]
02302
cram_add_to_ref_MD
[function]
[call site]
02303
bam_cigar2rlen
[function]
[call site]
02304
extend_ref
[function]
[call site]
02305
__ctype_b_loc
[call site]
02306
hts_str2uint
[function]
[call site]
02307
extend_ref
[function]
[call site]
02308
next_cigar_op
[function]
[call site]
02309
hts_log
[function]
[call site]
02310
__ctype_b_loc
[call site]
02311
extend_ref
[function]
[call site]
02312
next_cigar_op
[function]
[call site]
02313
hts_log
[function]
[call site]
02314
extend_ref
[function]
[call site]
02315
next_cigar_op
[function]
[call site]
02316
hts_log
[function]
[call site]
02317
extend_ref
[function]
[call site]
02318
extend_ref
[function]
[call site]
02319
hts_log
[function]
[call site]
02320
hts_log
[function]
[call site]
02321
pthread_mutex_lock
[call site]
02322
pthread_mutex_unlock
[call site]
02323
pthread_mutex_lock
[call site]
02324
pthread_mutex_unlock
[call site]
02325
cram_ref_decr
[function]
[call site]
02326
pthread_mutex_lock
[call site]
02327
cram_ref_decr_locked
[function]
[call site]
02328
__assert_fail
[call site]
02329
ref_entry_free_seq
[function]
[call site]
02330
pthread_mutex_unlock
[call site]
02331
cram_get_ref
[function]
[call site]
02332
hts_log
[function]
[call site]
02333
validate_md5
[function]
[call site]
02334
process_one_read
[function]
[call site]
02335
bam_aux_get
[function]
[call site]
02336
bam_aux_get
[function]
[call site]
02337
cram_stats_add
[function]
[call site]
02338
kh_init_m_i2i
[function]
[call site]
02339
kh_put_m_i2i
[function]
[call site]
02340
kh_resize_m_i2i
[function]
[call site]
02341
cram_stats_add
[function]
[call site]
02342
cram_stats_add
[function]
[call site]
02343
block_grow
[function]
[call site]
02344
block_resize
[function]
[call site]
02345
block_resize_exact
[function]
[call site]
02346
realloc
[call site]
02347
block_grow
[function]
[call site]
02348
nibble2base
[function]
[call site]
02349
hts_log
[function]
[call site]
02350
hts_realloc_p
[function]
[call site]
02351
hts_log
[function]
[call site]
02352
kputuw
[function]
[call site]
02353
ks_resize
[function]
[call site]
02354
ks_resize
[function]
[call site]
02355
kputc
[function]
[call site]
02356
ks_resize
[function]
[call site]
02357
cram_add_substitution
[function]
[call site]
02358
cram_stats_add
[function]
[call site]
02359
cram_stats_add
[function]
[call site]
02360
cram_stats_add
[function]
[call site]
02361
block_append_char
[function]
[call site]
02362
block_grow
[function]
[call site]
02363
cram_add_feature
[function]
[call site]
02364
hts_realloc_p
[function]
[call site]
02365
cram_stats_add
[function]
[call site]
02366
cram_stats_add
[function]
[call site]
02367
cram_stats_add
[function]
[call site]
02368
cram_add_bases
[function]
[call site]
02369
cram_add_feature
[function]
[call site]
02370
cram_add_base
[function]
[call site]
02371
cram_stats_add
[function]
[call site]
02372
cram_stats_add
[function]
[call site]
02373
block_append_char
[function]
[call site]
02374
cram_add_feature
[function]
[call site]
02375
cram_add_base
[function]
[call site]
02376
kputuw
[function]
[call site]
02377
kputc_
[function]
[call site]
02378
ks_resize
[function]
[call site]
02379
kputsn
[function]
[call site]
02380
ks_resize
[function]
[call site]
02381
cram_add_deletion
[function]
[call site]
02382
cram_stats_add
[function]
[call site]
02383
cram_add_feature
[function]
[call site]
02384
cram_add_skip
[function]
[call site]
02385
cram_stats_add
[function]
[call site]
02386
cram_add_feature
[function]
[call site]
02387
cram_add_insertion
[function]
[call site]
02388
cram_stats_add
[function]
[call site]
02389
block_append
[function]
[call site]
02390
block_grow
[function]
[call site]
02391
block_append_char
[function]
[call site]
02392
block_append_char
[function]
[call site]
02393
cram_add_feature
[function]
[call site]
02394
cram_add_quality
[function]
[call site]
02395
cram_stats_add
[function]
[call site]
02396
block_append_char
[function]
[call site]
02397
cram_add_feature
[function]
[call site]
02398
cram_add_softclip
[function]
[call site]
02399
block_append
[function]
[call site]
02400
block_append_char
[function]
[call site]
02401
block_append
[function]
[call site]
02402
block_append_char
[function]
[call site]
02403
block_append_char
[function]
[call site]
02404
cram_add_feature
[function]
[call site]
02405
cram_add_quality
[function]
[call site]
02406
cram_add_quality
[function]
[call site]
02407
cram_add_hardclip
[function]
[call site]
02408
cram_stats_add
[function]
[call site]
02409
cram_add_feature
[function]
[call site]
02410
cram_add_pad
[function]
[call site]
02411
cram_stats_add
[function]
[call site]
02412
cram_add_feature
[function]
[call site]
02413
hts_log
[function]
[call site]
02414
hts_log
[function]
[call site]
02415
cram_stats_add
[function]
[call site]
02416
kputuw
[function]
[call site]
02417
cram_stats_add
[function]
[call site]
02418
cram_encode_aux
[function]
[call site]
02419
bam_data_end
[function]
[call site]
02420
hts_malloc_ps
[function]
[call site]
02421
hts_add_sat2
[function]
[call site]
02422
hts_prod_sat2
[function]
[call site]
02423
hts_malloc
[function]
[call site]
02424
hts_log
[function]
[call site]
02425
sam_hrecs_find_rg
[function]
[call site]
02426
kh_get_m_s2i
[function]
[call site]
02427
hts_log
[function]
[call site]
02428
strncasecmp
[call site]
02429
hts_log
[function]
[call site]
02430
bam_aux2i_end
[function]
[call site]
02431
hts_log
[function]
[call site]
02432
block_append
[function]
[call site]
02433
kh_put_m_tagmap
[function]
[call site]
02434
kh_resize_m_tagmap
[function]
[call site]
02435
realloc
[call site]
02436
pthread_mutex_lock
[call site]
02437
kh_put_m_metrics
[function]
[call site]
02438
kh_resize_m_metrics
[function]
[call site]
02439
realloc
[call site]
02440
pthread_mutex_unlock
[call site]
02441
cram_new_metrics
[function]
[call site]
02442
kh_del_m_metrics
[function]
[call site]
02443
pthread_mutex_unlock
[call site]
02444
pthread_mutex_unlock
[call site]
02445
calloc
[call site]
02446
cram_encoder_init
[function]
[call site]
02447
cram_encoding2str
[function]
[call site]
02448
hts_log
[function]
[call site]
02449
cram_encoding2str
[function]
[call site]
02450
hts_log
[function]
[call site]
02451
abort
[call site]
02452
cram_stats_add
[function]
[call site]
02453
cram_stats_encoding
[function]
[call site]
02454
hts_realloc_p
[function]
[call site]
02455
hts_realloc_p
[function]
[call site]
02456
hts_realloc_p
[function]
[call site]
02457
hts_realloc_p
[function]
[call site]
02458
__assert_fail
[call site]
02459
cram_encoder_init
[function]
[call site]
02460
cram_stats_add
[function]
[call site]
02461
cram_stats_encoding
[function]
[call site]
02462
cram_encoder_init
[function]
[call site]
02463
cram_stats_add
[function]
[call site]
02464
cram_stats_encoding
[function]
[call site]
02465
cram_encoder_init
[function]
[call site]
02466
cram_encoder_init
[function]
[call site]
02467
hts_log
[function]
[call site]
02468
pthread_mutex_lock
[call site]
02469
pthread_mutex_unlock
[call site]
02470
cram_new_block
[function]
[call site]
02471
block_append_char
[function]
[call site]
02472
cram_new_block
[function]
[call site]
02473
block_append
[function]
[call site]
02474
cram_new_block
[function]
[call site]
02475
block_append
[function]
[call site]
02476
cram_new_block
[function]
[call site]
02477
block_append
[function]
[call site]
02478
cram_new_block
[function]
[call site]
02479
hts_log
[function]
[call site]
02480
cram_new_block
[function]
[call site]
02481
hts_log
[function]
[call site]
02482
hts_log
[function]
[call site]
02483
block_append_char
[function]
[call site]
02484
kh_put_m_s2i
[function]
[call site]
02485
kh_resize_m_s2i
[function]
[call site]
02486
__ac_FNV1a_hash_string
[function]
[call site]
02487
string_ndup
[function]
[call site]
02488
cram_stats_add
[function]
[call site]
02489
sam_hrecs_find_rg
[function]
[call site]
02490
cram_stats_add
[function]
[call site]
02491
block_grow
[function]
[call site]
02492
block_grow
[function]
[call site]
02493
cram_stats_add
[function]
[call site]
02494
kh_put_m_s2i
[function]
[call site]
02495
string_ndup
[function]
[call site]
02496
cram_stats_add
[function]
[call site]
02497
cram_stats_add
[function]
[call site]
02498
cram_stats_del
[function]
[call site]
02499
__assert_fail
[call site]
02500
kh_get_m_i2i
[function]
[call site]
02501
kh_del_m_i2i
[function]
[call site]
02502
hts_log
[function]
[call site]
02503
cram_stats_del
[function]
[call site]
02504
cram_stats_del
[function]
[call site]
02505
cram_stats_del
[function]
[call site]
02506
cram_stats_add
[function]
[call site]
02507
cram_stats_del
[function]
[call site]
02508
cram_stats_add
[function]
[call site]
02509
cram_stats_add
[function]
[call site]
02510
cram_stats_add
[function]
[call site]
02511
cram_stats_add
[function]
[call site]
02512
cram_stats_add
[function]
[call site]
02513
cram_stats_add
[function]
[call site]
02514
cram_stats_add
[function]
[call site]
02515
cram_stats_add
[function]
[call site]
02516
add_read_names
[function]
[call site]
02517
block_append
[function]
[call site]
02518
cram_stats_add
[function]
[call site]
02519
hts_prod_sat2
[function]
[call site]
02520
hts_calloc
[function]
[call site]
02521
__assert_fail
[call site]
02522
cram_ref_decr
[function]
[call site]
02523
pthread_mutex_lock
[call site]
02524
pthread_mutex_unlock
[call site]
02525
cram_stats_encoding
[function]
[call site]
02526
pthread_mutex_lock
[call site]
02527
pthread_mutex_unlock
[call site]
02528
hts_log
[function]
[call site]
02529
hts_md5_init
[function]
[call site]
02530
hts_md5_update
[function]
[call site]
02531
hts_md5_final
[function]
[call site]
02532
hts_md5_destroy
[function]
[call site]
02533
cram_stats_encoding
[function]
[call site]
02534
cram_encoder_init
[function]
[call site]
02535
cram_stats_encoding
[function]
[call site]
02536
cram_encoder_init
[function]
[call site]
02537
cram_stats_encoding
[function]
[call site]
02538
cram_encoder_init
[function]
[call site]
02539
cram_encoder_init
[function]
[call site]
02540
cram_encoder_init
[function]
[call site]
02541
cram_stats_encoding
[function]
[call site]
02542
cram_encoder_init
[function]
[call site]
02543
cram_stats_encoding
[function]
[call site]
02544
cram_encoder_init
[function]
[call site]
02545
cram_stats_encoding
[function]
[call site]
02546
cram_encoder_init
[function]
[call site]
02547
cram_stats_encoding
[function]
[call site]
02548
cram_encoder_init
[function]
[call site]
02549
cram_stats_encoding
[function]
[call site]
02550
cram_encoder_init
[function]
[call site]
02551
cram_stats_encoding
[function]
[call site]
02552
cram_encoder_init
[function]
[call site]
02553
cram_stats_encoding
[function]
[call site]
02554
cram_encoder_init
[function]
[call site]
02555
cram_stats_encoding
[function]
[call site]
02556
cram_encoder_init
[function]
[call site]
02557
cram_stats_encoding
[function]
[call site]
02558
cram_encoder_init
[function]
[call site]
02559
cram_stats_encoding
[function]
[call site]
02560
cram_encoder_init
[function]
[call site]
02561
cram_stats_encoding
[function]
[call site]
02562
cram_encoder_init
[function]
[call site]
02563
cram_stats_encoding
[function]
[call site]
02564
cram_encoder_init
[function]
[call site]
02565
cram_stats_encoding
[function]
[call site]
02566
cram_encoder_init
[function]
[call site]
02567
cram_encoder_init
[function]
[call site]
02568
cram_stats_encoding
[function]
[call site]
02569
cram_encoder_init
[function]
[call site]
02570
cram_stats_encoding
[function]
[call site]
02571
cram_encoder_init
[function]
[call site]
02572
cram_stats_encoding
[function]
[call site]
02573
cram_encoder_init
[function]
[call site]
02574
cram_stats_encoding
[function]
[call site]
02575
cram_encoder_init
[function]
[call site]
02576
cram_stats_encoding
[function]
[call site]
02577
cram_encoder_init
[function]
[call site]
02578
cram_stats_encoding
[function]
[call site]
02579
cram_encoder_init
[function]
[call site]
02580
cram_stats_encoding
[function]
[call site]
02581
cram_encoder_init
[function]
[call site]
02582
cram_stats_encoding
[function]
[call site]
02583
cram_encoder_init
[function]
[call site]
02584
cram_encoder_init
[function]
[call site]
02585
cram_encoder_init
[function]
[call site]
02586
cram_encoder_init
[function]
[call site]
02587
cram_encoder_init
[function]
[call site]
02588
hts_log
[function]
[call site]
02589
cram_encode_slice
[function]
[call site]
02590
hts_prod_sat2
[function]
[call site]
02591
hts_calloc_ps
[function]
[call site]
02592
hts_add_sat2
[function]
[call site]
02593
hts_calloc
[function]
[call site]
02594
hts_malloc_p
[function]
[call site]
02595
cram_new_block
[function]
[call site]
02596
cram_new_block
[function]
[call site]
02597
cram_new_block
[function]
[call site]
02598
block_append
[function]
[call site]
02599
cram_allocate_block
[function]
[call site]
02600
cram_new_block
[function]
[call site]
02601
cram_new_block
[function]
[call site]
02602
cram_allocate_block
[function]
[call site]
02603
cram_allocate_block
[function]
[call site]
02604
cram_encode_slice_read
[function]
[call site]
02605
hts_log
[function]
[call site]
02606
cram_free_block
[function]
[call site]
02607
cram_free_block
[function]
[call site]
02608
cram_free_block
[function]
[call site]
02609
cram_free_block
[function]
[call site]
02610
cram_compress_slice
[function]
[call site]
02611
cram_compress_block2
[function]
[call site]
02612
cram_compress_block3
[function]
[call site]
02613
pthread_mutex_lock
[call site]
02614
pthread_mutex_unlock
[call site]
02615
cram_compress_by_method
[function]
[call site]
02616
zlib_mem_deflate
[function]
[call site]
02617
deflateInit2_
[call site]
02618
hts_log
[function]
[call site]
02619
hts_log
[function]
[call site]
02620
deflate
[call site]
02621
hts_log
[function]
[call site]
02622
deflate
[call site]
02623
hts_log
[function]
[call site]
02624
deflateEnd
[call site]
02625
hts_log
[function]
[call site]
02626
BZ2_bzBuffToBuffCompress
[call site]
02627
fqz_compress
[function]
[call site]
02628
compress_block_fqz2f
[function]
[call site]
02629
fqz_pick_parameters
[function]
[call site]
02630
calloc
[call site]
02631
fqz_qual_stats
[function]
[call site]
02632
calloc
[call site]
02633
memcmp
[call site]
02634
fast_log
[function]
[call site]
02635
fast_log
[function]
[call site]
02636
fast_log
[function]
[call site]
02637
fast_log
[function]
[call site]
02638
fast_log
[function]
[call site]
02639
fast_log
[function]
[call site]
02640
fast_log
[function]
[call site]
02641
log
[call site]
02642
log
[call site]
02643
log
[call site]
02644
log
[call site]
02645
log
[call site]
02646
log
[call site]
02647
log
[call site]
02648
log
[call site]
02649
log
[call site]
02650
var_put_u32
[function]
[call site]
02651
var_put_u32_safe
[function]
[call site]
02652
fqz_store_parameters
[function]
[call site]
02653
store_array
[function]
[call site]
02654
fqz_store_parameters1
[function]
[call site]
02655
store_array
[function]
[call site]
02656
store_array
[function]
[call site]
02657
store_array
[function]
[call site]
02658
fqz_create_models
[function]
[call site]
02659
RC_SetOutput
[function]
[call site]
02660
RC_SetOutputEnd
[function]
[call site]
02661
RC_StartEncode
[function]
[call site]
02662
compress_new_read
[function]
[call site]
02663
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02664
RC_Encode
[function]
[call site]
02665
RC_ShiftLowCheck
[function]
[call site]
02666
SIMPLE_MODEL256_normalize
[function]
[call site]
02667
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02668
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02669
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02670
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02671
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02672
SIMPLE_MODEL2_normalize
[function]
[call site]
02673
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02674
memcmp
[call site]
02675
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02676
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02677
mm_prefetch
[function]
[call site]
02678
fqz_update_ctx
[function]
[call site]
02679
mm_prefetch
[function]
[call site]
02680
fqz_update_ctx
[function]
[call site]
02681
mm_prefetch
[function]
[call site]
02682
fqz_update_ctx
[function]
[call site]
02683
mm_prefetch
[function]
[call site]
02684
fqz_update_ctx
[function]
[call site]
02685
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02686
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02687
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02688
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02689
mm_prefetch
[function]
[call site]
02690
fqz_update_ctx
[function]
[call site]
02691
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02692
RC_FinishEncode
[function]
[call site]
02693
RC_ShiftLowCheck
[function]
[call site]
02694
RC_OutSize
[function]
[call site]
02695
fqz_destroy_models
[function]
[call site]
02696
fqz_free_parameters
[function]
[call site]
02697
lzma_mem_deflate
[function]
[call site]
02698
lzma_stream_buffer_bound
[call site]
02699
lzma_easy_buffer_encode
[call site]
02700
rans_compress
[function]
[call site]
02701
rans_compress_O1
[function]
[call site]
02702
rans_compress_O0
[function]
[call site]
02703
hist8
[function]
[call site]
02704
htscodecs_tls_calloc
[function]
[call site]
02705
htscodecs_tls_free
[function]
[call site]
02706
__assert_fail
[call site]
02707
RansEncSymbolInit
[function]
[call site]
02708
__assert_fail
[call site]
02709
__assert_fail
[call site]
02710
RansEncInit
[function]
[call site]
02711
RansEncInit
[function]
[call site]
02712
RansEncInit
[function]
[call site]
02713
RansEncInit
[function]
[call site]
02714
RansEncPutSymbol
[function]
[call site]
02715
__assert_fail
[call site]
02716
RansEncPutSymbol
[function]
[call site]
02717
RansEncPutSymbol
[function]
[call site]
02718
RansEncPutSymbol
[function]
[call site]
02719
RansEncPutSymbol
[function]
[call site]
02720
RansEncPutSymbol
[function]
[call site]
02721
RansEncPutSymbol
[function]
[call site]
02722
RansEncFlush
[function]
[call site]
02723
RansEncFlush
[function]
[call site]
02724
RansEncFlush
[function]
[call site]
02725
RansEncFlush
[function]
[call site]
02726
htscodecs_tls_alloc
[function]
[call site]
02727
hist1_4
[function]
[call site]
02728
htscodecs_tls_calloc
[function]
[call site]
02729
htscodecs_tls_free
[function]
[call site]
02730
RansEncSymbolInit
[function]
[call site]
02731
__assert_fail
[call site]
02732
RansEncInit
[function]
[call site]
02733
RansEncInit
[function]
[call site]
02734
RansEncInit
[function]
[call site]
02735
RansEncInit
[function]
[call site]
02736
RansEncPutSymbol
[function]
[call site]
02737
RansEncPutSymbol4
[function]
[call site]
02738
__assert_fail
[call site]
02739
__assert_fail
[call site]
02740
__assert_fail
[call site]
02741
__assert_fail
[call site]
02742
RansEncPutSymbol
[function]
[call site]
02743
RansEncPutSymbol
[function]
[call site]
02744
RansEncPutSymbol
[function]
[call site]
02745
RansEncPutSymbol
[function]
[call site]
02746
RansEncFlush
[function]
[call site]
02747
RansEncFlush
[function]
[call site]
02748
RansEncFlush
[function]
[call site]
02749
RansEncFlush
[function]
[call site]
02750
htscodecs_tls_free
[function]
[call site]
02751
rans_compress_O0
[function]
[call site]
02752
rans_compress_4x16
[function]
[call site]
02753
rans_compress_to_4x16
[function]
[call site]
02754
rans_compress_bound_4x16
[function]
[call site]
02755
var_put_u32
[function]
[call site]
02756
rans_compress_to_4x16
[function]
[call site]
02757
realloc
[call site]
02758
var_put_u32
[function]
[call site]
02759
var_put_u32
[function]
[call site]
02760
var_put_u32
[function]
[call site]
02761
hts_pack
[function]
[call site]
02762
var_put_u32
[function]
[call site]
02763
hts_rle_encode
[function]
[call site]
02764
rle_find_syms
[function]
[call site]
02765
var_put_u32
[function]
[call site]
02766
var_put_u32
[function]
[call site]
02767
var_put_u32
[function]
[call site]
02768
rans_enc_func
[function]
[call site]
02769
pthread_once
[call site]
02770
htscodecs_tls_cpu_init
[function]
[call site]
02771
strerror
[call site]
02772
fprintf
[call site]
02773
fprintf
[call site]
02774
var_put_u32
[function]
[call site]
02775
var_put_u32
[function]
[call site]
02776
var_put_u32
[function]
[call site]
02777
rans_enc_func
[function]
[call site]
02778
arith_compress_to
[function]
[call site]
02779
arith_compress_bound
[function]
[call site]
02780
var_put_u32
[function]
[call site]
02781
var_put_u32
[function]
[call site]
02782
arith_compress_to
[function]
[call site]
02783
arith_compress_to
[function]
[call site]
02784
var_put_u32
[function]
[call site]
02785
var_put_u32
[function]
[call site]
02786
hts_pack
[function]
[call site]
02787
var_put_u32
[function]
[call site]
02788
BZ2_bzBuffToBuffCompress
[call site]
02789
arith_compress_O0_RLE
[function]
[call site]
02790
arith_compress_bound
[function]
[call site]
02791
SIMPLE_MODEL256_init
[function]
[call site]
02792
htscodecs_tls_alloc
[function]
[call site]
02793
SIMPLE_MODEL258_init
[function]
[call site]
02794
RC_SetOutput
[function]
[call site]
02795
RC_SetOutputEnd
[function]
[call site]
02796
RC_StartEncode
[function]
[call site]
02797
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02798
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02799
SIMPLE_MODEL258_normalize
[function]
[call site]
02800
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02801
RC_FinishEncode
[function]
[call site]
02802
htscodecs_tls_free
[function]
[call site]
02803
RC_OutSize
[function]
[call site]
02804
htscodecs_tls_free
[function]
[call site]
02805
arith_compress_O1_RLE
[function]
[call site]
02806
arith_compress_bound
[function]
[call site]
02807
htscodecs_tls_alloc
[function]
[call site]
02808
SIMPLE_MODEL256_init
[function]
[call site]
02809
htscodecs_tls_alloc
[function]
[call site]
02810
htscodecs_tls_free
[function]
[call site]
02811
SIMPLE_MODEL258_init
[function]
[call site]
02812
RC_SetOutput
[function]
[call site]
02813
RC_SetOutputEnd
[function]
[call site]
02814
RC_StartEncode
[function]
[call site]
02815
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02816
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02817
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02818
RC_FinishEncode
[function]
[call site]
02819
htscodecs_tls_free
[function]
[call site]
02820
htscodecs_tls_free
[function]
[call site]
02821
RC_OutSize
[function]
[call site]
02822
htscodecs_tls_free
[function]
[call site]
02823
htscodecs_tls_free
[function]
[call site]
02824
arith_compress_O1
[function]
[call site]
02825
arith_compress_bound
[function]
[call site]
02826
htscodecs_tls_alloc
[function]
[call site]
02827
SIMPLE_MODEL256_init
[function]
[call site]
02828
RC_SetOutput
[function]
[call site]
02829
RC_SetOutputEnd
[function]
[call site]
02830
RC_StartEncode
[function]
[call site]
02831
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02832
RC_FinishEncode
[function]
[call site]
02833
htscodecs_tls_free
[function]
[call site]
02834
RC_OutSize
[function]
[call site]
02835
htscodecs_tls_free
[function]
[call site]
02836
arith_compress_O0
[function]
[call site]
02837
arith_compress_bound
[function]
[call site]
02838
SIMPLE_MODEL256_init
[function]
[call site]
02839
RC_SetOutput
[function]
[call site]
02840
RC_SetOutputEnd
[function]
[call site]
02841
RC_StartEncode
[function]
[call site]
02842
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02843
RC_FinishEncode
[function]
[call site]
02844
RC_OutSize
[function]
[call site]
02845
tok3_encode_names
[function]
[call site]
02846
create_context
[function]
[call site]
02847
build_trie
[function]
[call site]
02848
calloc
[call site]
02849
pool_create
[function]
[call site]
02850
pool_alloc
[function]
[call site]
02851
new_pool
[function]
[call site]
02852
realloc
[call site]
02853
free_context
[function]
[call site]
02854
free_context
[function]
[call site]
02855
encode_name
[function]
[call site]
02856
search_trie
[function]
[call site]
02857
__ctype_b_loc
[call site]
02858
__ctype_b_loc
[call site]
02859
__ctype_b_loc
[call site]
02860
__ctype_b_loc
[call site]
02861
__ctype_b_loc
[call site]
02862
calloc
[call site]
02863
__ctype_b_loc
[call site]
02864
strlen
[call site]
02865
encode_token_dup
[function]
[call site]
02866
encode_token_int
[function]
[call site]
02867
encode_token_type
[function]
[call site]
02868
descriptor_grow
[function]
[call site]
02869
realloc
[call site]
02870
descriptor_grow
[function]
[call site]
02871
encode_token_diff
[function]
[call site]
02872
encode_token_int
[function]
[call site]
02873
encode_token_char
[function]
[call site]
02874
encode_token_type
[function]
[call site]
02875
descriptor_grow
[function]
[call site]
02876
memcmp
[call site]
02877
encode_token_match
[function]
[call site]
02878
encode_token_type
[function]
[call site]
02879
encode_token_alpha
[function]
[call site]
02880
encode_token_type
[function]
[call site]
02881
descriptor_grow
[function]
[call site]
02882
encode_token_alpha
[function]
[call site]
02883
__ctype_b_loc
[call site]
02884
__ctype_b_loc
[call site]
02885
__ctype_b_loc
[call site]
02886
memcmp
[call site]
02887
encode_token_match
[function]
[call site]
02888
encode_token_alpha
[function]
[call site]
02889
encode_token_alpha
[function]
[call site]
02890
__ctype_b_loc
[call site]
02891
encode_token_match
[function]
[call site]
02892
encode_token_int1
[function]
[call site]
02893
encode_token_type
[function]
[call site]
02894
descriptor_grow
[function]
[call site]
02895
encode_token_int1_
[function]
[call site]
02896
descriptor_grow
[function]
[call site]
02897
encode_token_int
[function]
[call site]
02898
encode_token_int1_
[function]
[call site]
02899
encode_token_int
[function]
[call site]
02900
__ctype_b_loc
[call site]
02901
__ctype_b_loc
[call site]
02902
encode_token_match
[function]
[call site]
02903
encode_token_int1
[function]
[call site]
02904
encode_token_int
[function]
[call site]
02905
encode_token_int
[function]
[call site]
02906
encode_token_match
[function]
[call site]
02907
encode_token_char
[function]
[call site]
02908
encode_token_char
[function]
[call site]
02909
encode_token_end
[function]
[call site]
02910
encode_token_type
[function]
[call site]
02911
realloc
[call site]
02912
free_context
[function]
[call site]
02913
arith_compress_bound
[function]
[call site]
02914
free_context
[function]
[call site]
02915
compress
[function]
[call site]
02916
arith_encode
[function]
[call site]
02917
arith_compress_to
[function]
[call site]
02918
var_put_u32
[function]
[call site]
02919
rans_encode
[function]
[call site]
02920
rans_compress_to_4x16
[function]
[call site]
02921
var_put_u32
[function]
[call site]
02922
free_context
[function]
[call site]
02923
memcmp
[call site]
02924
free_context
[function]
[call site]
02925
free_context
[function]
[call site]
02926
pthread_mutex_lock
[call site]
02927
pthread_mutex_unlock
[call site]
02928
pthread_mutex_unlock
[call site]
02929
cram_compress_by_method
[function]
[call site]
02930
cram_block_method2str
[function]
[call site]
02931
hts_log
[function]
[call site]
02932
pthread_mutex_lock
[call site]
02933
pthread_mutex_unlock
[call site]
02934
cram_compress_block3
[function]
[call site]
02935
cram_compress_by_method
[function]
[call site]
02936
hts_log
[function]
[call site]
02937
cram_block_method2str
[function]
[call site]
02938
hts_log
[function]
[call site]
02939
pthread_mutex_lock
[call site]
02940
pthread_mutex_unlock
[call site]
02941
cram_compress_block2
[function]
[call site]
02942
cram_compress_block2
[function]
[call site]
02943
cram_compress_block2
[function]
[call site]
02944
cram_compress_block2
[function]
[call site]
02945
cram_compress_block2
[function]
[call site]
02946
cram_compress_block2
[function]
[call site]
02947
cram_compress_block2
[function]
[call site]
02948
cram_compress_block2
[function]
[call site]
02949
cram_compress_block2
[function]
[call site]
02950
cram_compress_block2
[function]
[call site]
02951
cram_compress_block2
[function]
[call site]
02952
cram_compress_block2
[function]
[call site]
02953
cram_compress_block2
[function]
[call site]
02954
cram_compress_block2
[function]
[call site]
02955
cram_compress_block2
[function]
[call site]
02956
hts_realloc_p
[function]
[call site]
02957
cram_free_block
[function]
[call site]
02958
cram_encode_slice_header
[function]
[call site]
02959
cram_new_block
[function]
[call site]
02960
hts_malloc_pse
[function]
[call site]
02961
hts_add_sat2
[function]
[call site]
02962
hts_prod_sat2
[function]
[call site]
02963
hts_add_sat2
[function]
[call site]
02964
hts_malloc
[function]
[call site]
02965
cram_free_block
[function]
[call site]
02966
hts_log
[function]
[call site]
02967
cram_free_block
[function]
[call site]
02968
__assert_fail
[call site]
02969
cram_encode_compression_header
[function]
[call site]
02970
cram_new_block
[function]
[call site]
02971
cram_new_block
[function]
[call site]
02972
itf8_put_blk
[function]
[call site]
02973
itf8_put
[function]
[call site]
02974
block_append
[function]
[call site]
02975
itf8_put_blk
[function]
[call site]
02976
itf8_put_blk
[function]
[call site]
02977
itf8_put_blk
[function]
[call site]
02978
itf8_put_blk
[function]
[call site]
02979
itf8_put_blk
[function]
[call site]
02980
kh_destroy_map
[function]
[call site]
02981
kh_init_map
[function]
[call site]
02982
calloc
[call site]
02983
kh_put_map
[function]
[call site]
02984
kh_resize_map
[function]
[call site]
02985
__errno_location
[call site]
02986
realloc
[call site]
02987
__ac_FNV1a_hash_string
[function]
[call site]
02988
strcmp
[call site]
02989
kh_put_map
[function]
[call site]
02990
kh_put_map
[function]
[call site]
02991
kh_put_map
[function]
[call site]
02992
kh_put_map
[function]
[call site]
02993
kh_put_map
[function]
[call site]
02994
kh_put_map
[function]
[call site]
02995
kh_put_map
[function]
[call site]
02996
block_append
[function]
[call site]
02997
block_append_char
[function]
[call site]
02998
sub_idx
[function]
[call site]
02999
sub_idx
[function]
[call site]
03000
sub_idx
[function]
[call site]
03001
sub_idx
[function]
[call site]
03002
sub_idx
[function]
[call site]
03003
sub_idx
[function]
[call site]
03004
sub_idx
[function]
[call site]
03005
sub_idx
[function]
[call site]
03006
sub_idx
[function]
[call site]
03007
sub_idx
[function]
[call site]
03008
sub_idx
[function]
[call site]
03009
sub_idx
[function]
[call site]
03010
sub_idx
[function]
[call site]
03011
sub_idx
[function]
[call site]
03012
sub_idx
[function]
[call site]
03013
sub_idx
[function]
[call site]
03014
sub_idx
[function]
[call site]
03015
sub_idx
[function]
[call site]
03016
sub_idx
[function]
[call site]
03017
sub_idx
[function]
[call site]
03018
block_append
[function]
[call site]
03019
block_append
[function]
[call site]
03020
block_append
[function]
[call site]
03021
block_append
[function]
[call site]
03022
block_append
[function]
[call site]
03023
hts_log
[function]
[call site]
03024
cram_free_block
[function]
[call site]
03025
hts_malloc_p
[function]
[call site]
03026
cram_ref_decr
[function]
[call site]
03027
cram_ref_decr
[function]
[call site]
03028
cram_flush_container2
[function]
[call site]
03029
htell
[function]
[call site]
03030
cram_write_container
[function]
[call site]
03031
itf8_put
[function]
[call site]
03032
crc32
[call site]
03033
hwrite
[function]
[call site]
03034
htell
[function]
[call site]
03035
cram_write_block
[function]
[call site]
03036
__assert_fail
[call site]
03037
hputc
[function]
[call site]
03038
hputc2
[function]
[call site]
03039
flush_buffer
[function]
[call site]
03040
hputc
[function]
[call site]
03041
hwrite
[function]
[call site]
03042
hwrite
[function]
[call site]
03043
hwrite
[function]
[call site]
03044
__assert_fail
[call site]
03045
crc32
[call site]
03046
crc32
[call site]
03047
crc32
[call site]
03048
int32_encode
[function]
[call site]
03049
hwrite
[function]
[call site]
03050
htell
[function]
[call site]
03051
cram_write_block
[function]
[call site]
03052
cram_write_block
[function]
[call site]
03053
htell
[function]
[call site]
03054
cram_index_slice
[function]
[call site]
03055
hts_log
[function]
[call site]
03056
cram_index_build_multiref
[function]
[call site]
03057
cram_decode_slice
[function]
[call site]
03058
cram_dependent_data_series
[function]
[call site]
03059
cram_uncompress_block
[function]
[call site]
03060
cram_uncompress_block
[function]
[call site]
03061
hts_calloc_ps
[function]
[call site]
03062
cram_codec_to_id
[function]
[call site]
03063
cram_codec_to_id
[function]
[call site]
03064
cram_codec_to_id
[function]
[call site]
03065
hts_log
[function]
[call site]
03066
cram_uncompress_block
[function]
[call site]
03067
cram_codec_to_id
[function]
[call site]
03068
cram_uncompress_block
[function]
[call site]
03069
cram_codec_to_id
[function]
[call site]
03070
cram_codec_to_id
[function]
[call site]
03071
block_resize_exact
[function]
[call site]
03072
block_resize_exact
[function]
[call site]
03073
block_resize_exact
[function]
[call site]
03074
strcmp
[call site]
03075
hts_malloc_p
[function]
[call site]
03076
hts_log
[function]
[call site]
03077
cram_get_block_by_id
[function]
[call site]
03078
cram_uncompress_block
[function]
[call site]
03079
hts_log
[function]
[call site]
03080
cram_get_ref
[function]
[call site]
03081
hts_log
[function]
[call site]
03082
pthread_mutex_lock
[call site]
03083
pthread_mutex_lock
[call site]
03084
pthread_mutex_unlock
[call site]
03085
pthread_mutex_unlock
[call site]
03086
hts_log
[function]
[call site]
03087
memcmp
[call site]
03088
hts_log
[function]
[call site]
03089
hts_log
[function]
[call site]
03090
hts_md5_init
[function]
[call site]
03091
hts_md5_update
[function]
[call site]
03092
hts_md5_final
[function]
[call site]
03093
hts_md5_destroy
[function]
[call site]
03094
cram_get_block_by_id
[function]
[call site]
03095
hts_md5_init
[function]
[call site]
03096
hts_md5_update
[function]
[call site]
03097
hts_md5_final
[function]
[call site]
03098
hts_md5_destroy
[function]
[call site]
03099
memcmp
[call site]
03100
sam_hdr_tid2name
[function]
[call site]
03101
hts_log
[function]
[call site]
03102
md5_print
[function]
[call site]
03103
hts_log
[function]
[call site]
03104
md5_print
[function]
[call site]
03105
hts_log
[function]
[call site]
03106
sam_hdr_find_tag_id
[function]
[call site]
03107
sam_hdr_fill_hrecs
[function]
[call site]
03108
sam_hrecs_find_type_id
[function]
[call site]
03109
sam_hrecs_find_key
[function]
[call site]
03110
kputsn
[function]
[call site]
03111
hts_log
[function]
[call site]
03112
hts_log
[function]
[call site]
03113
ks_free
[function]
[call site]
03114
ks_initialize
[function]
[call site]
03115
pthread_mutex_lock
[call site]
03116
pthread_mutex_lock
[call site]
03117
calloc
[call site]
03118
pthread_mutex_unlock
[call site]
03119
pthread_mutex_unlock
[call site]
03120
hts_log
[function]
[call site]
03121
pthread_mutex_lock
[call site]
03122
pthread_mutex_unlock
[call site]
03123
cram_get_ref
[function]
[call site]
03124
pthread_mutex_lock
[call site]
03125
pthread_mutex_unlock
[call site]
03126
pthread_mutex_lock
[call site]
03127
pthread_mutex_unlock
[call site]
03128
cram_ref_decr
[function]
[call site]
03129
pthread_mutex_lock
[call site]
03130
pthread_mutex_lock
[call site]
03131
pthread_mutex_unlock
[call site]
03132
pthread_mutex_unlock
[call site]
03133
hts_log
[function]
[call site]
03134
hts_log
[function]
[call site]
03135
pthread_mutex_lock
[call site]
03136
pthread_mutex_unlock
[call site]
03137
hts_log
[function]
[call site]
03138
hts_log
[function]
[call site]
03139
hts_log
[function]
[call site]
03140
cram_decode_tlen
[function]
[call site]
03141
cram_decode_tlen
[function]
[call site]
03142
cram_decode_tlen
[function]
[call site]
03143
cram_decode_aux_1_0
[function]
[call site]
03144
map_find
[function]
[call site]
03145
block_append
[function]
[call site]
03146
cram_decode_aux
[function]
[call site]
03147
strlen
[call site]
03148
map_find
[function]
[call site]
03149
block_append
[function]
[call site]
03150
aux_ele_size
[function]
[call site]
03151
hts_log
[function]
[call site]
03152
block_resize
[function]
[call site]
03153
block_resize
[function]
[call site]
03154
hts_log
[function]
[call site]
03155
cram_decode_seq
[function]
[call site]
03156
block_append
[function]
[call site]
03157
hts_realloc_p
[function]
[call site]
03158
hts_log
[function]
[call site]
03159
hts_log
[function]
[call site]
03160
memchr
[call site]
03161
add_md_char
[function]
[call site]
03162
block_append_uint
[function]
[call site]
03163
block_grow
[function]
[call site]
03164
append_uint32
[function]
[call site]
03165
block_append_char
[function]
[call site]
03166
block_append_uint
[function]
[call site]
03167
add_md_char
[function]
[call site]
03168
block_append_uint
[function]
[call site]
03169
block_append_char
[function]
[call site]
03170
block_append
[function]
[call site]
03171
block_append_char
[function]
[call site]
03172
block_append
[function]
[call site]
03173
block_append_uint
[function]
[call site]
03174
block_append_uint
[function]
[call site]
03175
block_append_uint
[function]
[call site]
03176
block_append_char
[function]
[call site]
03177
block_append_uint
[function]
[call site]
03178
block_append_char
[function]
[call site]
03179
hts_log
[function]
[call site]
03180
memchr
[call site]
03181
add_md_char
[function]
[call site]
03182
hts_realloc_p
[function]
[call site]
03183
block_append_uint
[function]
[call site]
03184
hts_realloc_p
[function]
[call site]
03185
block_append_char
[function]
[call site]
03186
block_append
[function]
[call site]
03187
hts_log
[function]
[call site]
03188
pthread_mutex_lock
[call site]
03189
cram_ref_decr
[function]
[call site]
03190
cram_ref_decr
[function]
[call site]
03191
pthread_mutex_unlock
[call site]
03192
cram_decode_slice_xref
[function]
[call site]
03193
hts_log
[function]
[call site]
03194
cram_free_block
[function]
[call site]
03195
block_resize_exact
[function]
[call site]
03196
block_resize_exact
[function]
[call site]
03197
block_resize_exact
[function]
[call site]
03198
block_resize_exact
[function]
[call site]
03199
bulk_cram_to_bam
[function]
[call site]
03200
pthread_mutex_lock
[call site]
03201
pthread_mutex_unlock
[call site]
03202
hts_realloc_p
[function]
[call site]
03203
bam_set_mempolicy
[function]
[call site]
03204
calloc
[call site]
03205
calloc
[call site]
03206
bam_set_mempolicy
[function]
[call site]
03207
cram_to_bam
[function]
[call site]
03208
hts_log
[function]
[call site]
03209
strlen
[call site]
03210
append_uint64
[function]
[call site]
03211
append_uint32
[function]
[call site]
03212
append_uint32
[function]
[call site]
03213
append_sub32
[function]
[call site]
03214
append_uint32
[function]
[call site]
03215
append_sub32
[function]
[call site]
03216
append_uint64
[function]
[call site]
03217
bam_set1
[function]
[call site]
03218
bam_cigar2rqlens
[function]
[call site]
03219
hts_log
[function]
[call site]
03220
__errno_location
[call site]
03221
hts_log
[function]
[call site]
03222
__errno_location
[call site]
03223
hts_log
[function]
[call site]
03224
__errno_location
[call site]
03225
hts_log
[function]
[call site]
03226
__errno_location
[call site]
03227
subtract_check_underflow
[function]
[call site]
03228
subtract_check_underflow
[function]
[call site]
03229
subtract_check_underflow
[function]
[call site]
03230
subtract_check_underflow
[function]
[call site]
03231
subtract_check_underflow
[function]
[call site]
03232
hts_log
[function]
[call site]
03233
__errno_location
[call site]
03234
hts_add_sat2
[function]
[call site]
03235
realloc_bam_data
[function]
[call site]
03236
sam_realloc_bam_data
[function]
[call site]
03237
__errno_location
[call site]
03238
__errno_location
[call site]
03239
bam_get_mempolicy
[function]
[call site]
03240
realloc
[call site]
03241
bam_get_mempolicy
[function]
[call site]
03242
bam_set_mempolicy
[function]
[call site]
03243
hts_reg2bin
[function]
[call site]
03244
strncpy
[call site]
03245
bam_tag2cigar
[function]
[call site]
03246
bam_aux_get
[function]
[call site]
03247
__errno_location
[call site]
03248
__errno_location
[call site]
03249
__errno_location
[call site]
03250
le_to_u32
[function]
[call site]
03251
possibly_expand_bam_data
[function]
[call site]
03252
__errno_location
[call site]
03253
sam_realloc_bam_data
[function]
[call site]
03254
bam_endpos
[function]
[call site]
03255
bam_cigar2rlen
[function]
[call site]
03256
hts_reg2bin
[function]
[call site]
03257
hts_log
[function]
[call site]
03258
bam_cigar2qlen
[function]
[call site]
03259
hts_log
[function]
[call site]
03260
pthread_mutex_lock
[call site]
03261
cram_ref_decr
[function]
[call site]
03262
pthread_mutex_unlock
[call site]
03263
hts_log
[function]
[call site]
03264
snprintf
[call site]
03265
strlen
[call site]
03266
bgzf_write
[function]
[call site]
03267
hwrite
[function]
[call site]
03268
__assert_fail
[call site]
03269
lazy_flush
[function]
[call site]
03270
mt_queue
[function]
[call site]
03271
bgzf_flush
[function]
[call site]
03272
snprintf
[call site]
03273
strlen
[call site]
03274
bgzf_write
[function]
[call site]
03275
snprintf
[call site]
03276
strlen
[call site]
03277
bgzf_write
[function]
[call site]
03278
__errno_location
[call site]
03279
hts_tpool_dispatch2
[function]
[call site]
03280
hts_tpool_dispatch3
[function]
[call site]
03281
cram_flush_thread
[function]
[call site]
03282
cram_encode_container
[function]
[call site]
03283
hts_log
[function]
[call site]
03284
__errno_location
[call site]
03285
cram_flush_result
[function]
[call site]
03286
hts_tpool_next_result
[function]
[call site]
03287
pthread_mutex_lock
[call site]
03288
hts_tpool_next_result_locked
[function]
[call site]
03289
pthread_mutex_unlock
[call site]
03290
hts_tpool_result_data
[function]
[call site]
03291
hts_tpool_delete_result
[function]
[call site]
03292
cram_flush_container2
[function]
[call site]
03293
cram_free_slice
[function]
[call site]
03294
cram_free_slice
[function]
[call site]
03295
cram_free_container
[function]
[call site]
03296
hts_tpool_delete_result
[function]
[call site]
03297
cram_free_container
[function]
[call site]
03298
hts_usleep
[function]
[call site]
03299
cram_drain_rqueue
[function]
[call site]
03300
hts_tpool_process_flush
[function]
[call site]
03301
cram_flush_result
[function]
[call site]
03302
hts_tpool_process_destroy
[function]
[call site]
03303
pthread_mutex_destroy
[call site]
03304
pthread_mutex_destroy
[call site]
03305
pthread_mutex_destroy
[call site]
03306
pthread_mutex_destroy
[call site]
03307
cram_write_eof_block
[function]
[call site]
03308
cram_encode_compression_header
[function]
[call site]
03309
cram_write_container
[function]
[call site]
03310
cram_write_block
[function]
[call site]
03311
cram_close
[function]
[call site]
03312
free_bam_list
[function]
[call site]
03313
hclose
[function]
[call site]
03314
cram_free_file_def
[function]
[call site]
03315
sam_hdr_destroy
[function]
[call site]
03316
cram_free_container
[function]
[call site]
03317
cram_free_container
[function]
[call site]
03318
refs_free
[function]
[call site]
03319
kh_destroy_m_metrics
[function]
[call site]
03320
cram_index_free
[function]
[call site]
03321
cram_index_free_recurse
[function]
[call site]
03322
cram_index_free_recurse
[function]
[call site]
03323
hts_tpool_destroy
[function]
[call site]
03324
bgzf_close
[function]
[call site]
03325
cram_free_block
[function]
[call site]
03326
kh_destroy_map
[function]
[call site]
03327
cram_free_block
[function]
[call site]
03328
sam_state_destroy
[function]
[call site]
03329
fastq_state_destroy
[function]
[call site]
03330
kh_destroy_tag
[function]
[call site]
03331
ks_free
[function]
[call site]
03332
ks_initialize
[function]
[call site]
03333
ks_free
[function]
[call site]
03334
ks_free
[function]
[call site]
03335
regfree
[call site]
03336
bgzf_close
[function]
[call site]
03337
hclose
[function]
[call site]
03338
hts_idx_close_otf_fp
[function]
[call site]
03339
need_idx_ugly_delay_hack
[function]
[call site]
03340
idx_write_uint64
[function]
[call site]
03341
ed_is_big
[function]
[call site]
03342
ed_swap_8
[function]
[call site]
03343
bgzf_write
[function]
[call site]
03344
bgzf_close
[function]
[call site]
03345
__errno_location
[call site]
03346
sam_hdr_destroy
[function]
[call site]
03347
hts_idx_destroy
[function]
[call site]
03348
cram_index_free
[function]
[call site]
03349
kh_destroy_bin
[function]
[call site]
03350
hts_filter_free
[function]
[call site]
03351
__errno_location
[call site]
03352
view_sam
[function]
[call site]
03353
abort
[call site]
03354
hopen
[function]
[call site]
03355
hts_hopen
[function]
[call site]
03356
hclose
[function]
[call site]
03357
abort
[call site]
03358
hts_open
[function]
[call site]
03359
hts_open_format
[function]
[call site]
03360
strncpy
[call site]
03361
strchr
[call site]
03362
strchr
[call site]
03363
strchr
[call site]
03364
strstr
[call site]
03365
strdup
[call site]
03366
hopen
[function]
[call site]
03367
hts_hopen
[function]
[call site]
03368
hts_opt_apply
[function]
[call site]
03369
__errno_location
[call site]
03370
__errno_location
[call site]
03371
__errno_location
[call site]
03372
__errno_location
[call site]
03373
strerror
[call site]
03374
hts_log
[function]
[call site]
03375
hclose_abruptly
[function]
[call site]
03376
abort
[call site]
03377
sam_hdr_read
[function]
[call site]
03378
__errno_location
[call site]
03379
bam_hdr_read
[function]
[call site]
03380
bgzf_check_EOF
[function]
[call site]
03381
pthread_mutex_lock
[call site]
03382
pthread_cond_signal
[call site]
03383
hts_tpool_wake_dispatch
[function]
[call site]
03384
pthread_mutex_unlock
[call site]
03385
pthread_cond_wait
[call site]
03386
pthread_cond_signal
[call site]
03387
abort
[call site]
03388
pthread_mutex_unlock
[call site]
03389
bgzf_check_EOF_common
[function]
[call site]
03390
htell
[function]
[call site]
03391
hseek
[function]
[call site]
03392
__errno_location
[call site]
03393
hclearerr
[function]
[call site]
03394
__errno_location
[call site]
03395
hclearerr
[function]
[call site]
03396
hread
[function]
[call site]
03397
hseek
[function]
[call site]
03398
memcmp
[call site]
03399
perror
[call site]
03400
hts_log
[function]
[call site]
03401
bgzf_read
[function]
[call site]
03402
memcmp
[call site]
03403
hts_log
[function]
[call site]
03404
sam_hdr_init
[function]
[call site]
03405
bgzf_read
[function]
[call site]
03406
le_to_u32
[function]
[call site]
03407
bgzf_read
[function]
[call site]
03408
bgzf_read
[function]
[call site]
03409
ed_swap_4p
[function]
[call site]
03410
ed_swap_4
[function]
[call site]
03411
calloc
[call site]
03412
calloc
[call site]
03413
bgzf_read
[function]
[call site]
03414
ed_swap_4p
[function]
[call site]
03415
bgzf_read
[function]
[call site]
03416
realloc
[call site]
03417
bgzf_read
[function]
[call site]
03418
ed_swap_4p
[function]
[call site]
03419
hts_log
[function]
[call site]
03420
hts_log
[function]
[call site]
03421
hts_log
[function]
[call site]
03422
sam_hdr_destroy
[function]
[call site]
03423
sam_hdr_sanitise
[function]
[call site]
03424
sam_hdr_destroy
[function]
[call site]
03425
hts_log
[function]
[call site]
03426
hts_log
[function]
[call site]
03427
hts_log
[function]
[call site]
03428
sam_hdr_destroy
[function]
[call site]
03429
realloc
[call site]
03430
sam_hdr_destroy
[function]
[call site]
03431
sam_hdr_dup
[function]
[call site]
03432
sam_hdr_init
[function]
[call site]
03433
calloc
[call site]
03434
calloc
[call site]
03435
strdup
[call site]
03436
sam_hdr_dup_sdict
[function]
[call site]
03437
kh_init_s2i
[function]
[call site]
03438
kh_get_s2i
[function]
[call site]
03439
kh_put_s2i
[function]
[call site]
03440
kh_destroy_s2i
[function]
[call site]
03441
sam_hrecs_rebuild_text
[function]
[call site]
03442
kputsn
[function]
[call site]
03443
sam_hrecs_rebuild_lines
[function]
[call site]
03444
kputsn
[function]
[call site]
03445
build_header_line
[function]
[call site]
03446
kputc_
[function]
[call site]
03447
kputsn
[function]
[call site]
03448
kputc_
[function]
[call site]
03449
kputsn
[function]
[call site]
03450
kputc
[function]
[call site]
03451
ks_release
[function]
[call site]
03452
ks_release
[function]
[call site]
03453
sam_hdr_update_target_arrays
[function]
[call site]
03454
hts_malloc_ps
[function]
[call site]
03455
sam_hdr_destroy
[function]
[call site]
03456
sam_hdr_sanitise
[function]
[call site]
03457
sam_hdr_create
[function]
[call site]
03458
sam_hdr_init
[function]
[call site]
03459
sam_hdr_build_from_sam_file
[function]
[call site]
03460
sam_hrecs_new
[function]
[call site]
03461
hts_getline
[function]
[call site]
03462
hts_log
[function]
[call site]
03463
abort
[call site]
03464
kgetline2
[function]
[call site]
03465
ks_resize
[function]
[call site]
03466
hgetln_wrapper
[function]
[call site]
03467
hgetln
[function]
[call site]
03468
herrno
[function]
[call site]
03469
__errno_location
[call site]
03470
bgzf_getline
[function]
[call site]
03471
bgzf_read_block
[function]
[call site]
03472
memchr
[call site]
03473
ks_expand
[function]
[call site]
03474
bgzf_htell
[function]
[call site]
03475
hts_log
[function]
[call site]
03476
isalpha_c
[function]
[call site]
03477
sam_hrecs_error
[function]
[call site]
03478
strncmp
[call site]
03479
kputc
[function]
[call site]
03480
valid_sam_header_type
[function]
[call site]
03481
hts_log
[function]
[call site]
03482
warn_if_known_stderr
[function]
[call site]
03483
sam_hrecs_parse_single_line
[function]
[call site]
03484
TYPEKEY
[function]
[call site]
03485
kputsn
[function]
[call site]
03486
kputc
[function]
[call site]
03487
bgzf_peek
[function]
[call site]
03488
bgzf_read_block
[function]
[call site]
03489
hts_log
[function]
[call site]
03490
hpeek
[function]
[call site]
03491
strstr
[call site]
03492
hopen
[function]
[call site]
03493
khgetline
[function]
[call site]
03494
kgetline
[function]
[call site]
03495
ks_resize
[function]
[call site]
03496
strlen
[call site]
03497
hgets_wrapper
[function]
[call site]
03498
hgets
[function]
[call site]
03499
strchr
[call site]
03500
strtoll
[call site]
03501
kputs
[function]
[call site]
03502
kputsn
[function]
[call site]
03503
kputs
[function]
[call site]
03504
kputll
[function]
[call site]
03505
kputc
[function]
[call site]
03506
sam_hrecs_parse_single_line
[function]
[call site]
03507
ks_free
[function]
[call site]
03508
hclose
[function]
[call site]
03509
hts_log
[function]
[call site]
03510
kh_grow_to_fit_m_s2i
[function]
[call site]
03511
hts_realloc_p
[function]
[call site]
03512
sam_hrecs_update_hashes
[function]
[call site]
03513
kputsn
[function]
[call site]
03514
ks_release
[function]
[call site]
03515
sam_hdr_update_target_arrays
[function]
[call site]
03516
ks_free
[function]
[call site]
03517
sam_hdr_destroy
[function]
[call site]
03518
sam_hdr_destroy
[function]
[call site]
03519
sam_hdr_sanitise
[function]
[call site]
03520
sam_hdr_init
[function]
[call site]
03521
__errno_location
[call site]
03522
__errno_location
[call site]
03523
sam_hdr_incr_ref
[function]
[call site]
03524
hts_close_or_abort
[function]
[call site]
03525
hts_close
[function]
[call site]
03526
abort
[call site]
03527
hts_close
[function]
[call site]
03528
hts_close
[function]
[call site]
03529
sam_hdr_count_lines
[function]
[call site]
03530
sam_hdr_fill_hrecs
[function]
[call site]
03531
sam_hrecs_find_type_id
[function]
[call site]
03532
sam_hdr_write
[function]
[call site]
03533
__errno_location
[call site]
03534
bam_hdr_write
[function]
[call site]
03535
sam_hrecs_rebuild_text
[function]
[call site]
03536
hts_log
[function]
[call site]
03537
hts_log
[function]
[call site]
03538
hts_log
[function]
[call site]
03539
hts_log
[function]
[call site]
03540
hts_log
[function]
[call site]
03541
hts_log
[function]
[call site]
03542
bgzf_write
[function]
[call site]
03543
ed_swap_4
[function]
[call site]
03544
bgzf_write
[function]
[call site]
03545
bgzf_write
[function]
[call site]
03546
ed_swap_4
[function]
[call site]
03547
bgzf_write
[function]
[call site]
03548
bgzf_write
[function]
[call site]
03549
bgzf_write
[function]
[call site]
03550
bgzf_write
[function]
[call site]
03551
strlen
[call site]
03552
ed_swap_4
[function]
[call site]
03553
bgzf_write
[function]
[call site]
03554
bgzf_write
[function]
[call site]
03555
bgzf_write
[function]
[call site]
03556
ed_swap_4
[function]
[call site]
03557
bgzf_write
[function]
[call site]
03558
bgzf_write
[function]
[call site]
03559
bgzf_flush
[function]
[call site]
03560
cram_set_header2
[function]
[call site]
03561
sam_hdr_destroy
[function]
[call site]
03562
sam_hdr_dup
[function]
[call site]
03563
refs_from_header
[function]
[call site]
03564
cram_load_reference
[function]
[call site]
03565
cram_write_SAM_hdr
[function]
[call site]
03566
cram_write_file_def
[function]
[call site]
03567
hwrite
[function]
[call site]
03568
sam_hrecs_find_rg
[function]
[call site]
03569
sam_hdr_add_line
[function]
[call site]
03570
sam_hdr_fill_hrecs
[function]
[call site]
03571
sam_hrecs_vadd
[function]
[call site]
03572
rebuild_target_arrays
[function]
[call site]
03573
redact_header_text
[function]
[call site]
03574
refs_from_header
[function]
[call site]
03575
refs2id
[function]
[call site]
03576
sam_hrecs_find_type_id
[function]
[call site]
03577
sam_hrecs_find_key
[function]
[call site]
03578
cram_get_ref
[function]
[call site]
03579
hts_log
[function]
[call site]
03580
hts_log
[function]
[call site]
03581
hts_log
[function]
[call site]
03582
pthread_mutex_lock
[call site]
03583
pthread_mutex_unlock
[call site]
03584
hts_md5_init
[function]
[call site]
03585
hts_md5_update
[function]
[call site]
03586
hts_md5_final
[function]
[call site]
03587
hts_md5_destroy
[function]
[call site]
03588
cram_ref_decr
[function]
[call site]
03589
hts_md5_hex
[function]
[call site]
03590
sam_hdr_update_line
[function]
[call site]
03591
sam_hdr_fill_hrecs
[function]
[call site]
03592
sam_hrecs_find_type_id
[function]
[call site]
03593
check_for_name_update
[function]
[call site]
03594
TYPEKEY
[function]
[call site]
03595
TYPEKEY
[function]
[call site]
03596
TYPEKEY
[function]
[call site]
03597
sam_hrecs_find_key
[function]
[call site]
03598
__assert_fail
[call site]
03599
strcmp
[call site]
03600
strcmp
[call site]
03601
kh_get_m_s2i
[function]
[call site]
03602
hts_log
[function]
[call site]
03603
TYPEKEY
[function]
[call site]
03604
hts_log
[function]
[call site]
03605
sam_hrecs_vupdate
[function]
[call site]
03606
kh_get_m_s2i
[function]
[call site]
03607
sam_hrecs_find_key
[function]
[call site]
03608
__assert_fail
[call site]
03609
__assert_fail
[call site]
03610
__assert_fail
[call site]
03611
kh_del_m_s2i
[function]
[call site]
03612
kh_put_m_s2i
[function]
[call site]
03613
hts_log
[function]
[call site]
03614
TYPEKEY
[function]
[call site]
03615
sam_hrecs_update_hashes
[function]
[call site]
03616
rebuild_target_arrays
[function]
[call site]
03617
redact_header_text
[function]
[call site]
03618
full_path
[function]
[call site]
03619
strlen
[call site]
03620
hisremote
[function]
[call site]
03621
hts_log
[function]
[call site]
03622
strncpy
[call site]
03623
toupper_c
[function]
[call site]
03624
strncpy
[call site]
03625
getcwd
[call site]
03626
strlen
[call site]
03627
strncpy
[call site]
03628
snprintf
[call site]
03629
sam_hdr_update_line
[function]
[call site]
03630
sam_hdr_remove_tag_all
[function]
[call site]
03631
sam_hdr_fill_hrecs
[function]
[call site]
03632
TYPEKEY
[function]
[call site]
03633
kh_get_sam_hrecs_t
[function]
[call site]
03634
sam_hrecs_remove_key
[function]
[call site]
03635
sam_hrecs_find_key
[function]
[call site]
03636
TYPEKEY
[function]
[call site]
03637
__assert_fail
[call site]
03638
sam_hrecs_find_key
[function]
[call site]
03639
__assert_fail
[call site]
03640
kh_get_m_s2i
[function]
[call site]
03641
sam_hrecs_remove_ref_altnames
[function]
[call site]
03642
kstrtok
[function]
[call site]
03643
ks_clear
[function]
[call site]
03644
kputsn
[function]
[call site]
03645
kh_get_m_s2i
[function]
[call site]
03646
strcmp
[call site]
03647
kh_del_m_s2i
[function]
[call site]
03648
pool_free
[function]
[call site]
03649
hts_log
[function]
[call site]
03650
sam_hdr_length
[function]
[call site]
03651
sam_hdr_rebuild
[function]
[call site]
03652
rebuild_target_arrays
[function]
[call site]
03653
hts_log
[function]
[call site]
03654
sam_hdr_link_pg
[function]
[call site]
03655
sam_hdr_fill_hrecs
[function]
[call site]
03656
hts_realloc_p
[function]
[call site]
03657
calloc
[call site]
03658
__assert_fail
[call site]
03659
kh_get_m_s2i
[function]
[call site]
03660
hts_log
[function]
[call site]
03661
hts_log
[function]
[call site]
03662
redact_header_text
[function]
[call site]
03663
hts_log
[function]
[call site]
03664
sam_hrecs_rebuild_text
[function]
[call site]
03665
ks_free
[function]
[call site]
03666
hts_log
[function]
[call site]
03667
ks_len
[function]
[call site]
03668
ks_release
[function]
[call site]
03669
hts_log
[function]
[call site]
03670
int32_encode
[function]
[call site]
03671
sam_hdr_str
[function]
[call site]
03672
sam_hdr_rebuild
[function]
[call site]
03673
hwrite
[function]
[call site]
03674
cram_new_block
[function]
[call site]
03675
cram_new_container
[function]
[call site]
03676
calloc
[call site]
03677
calloc
[call site]
03678
cram_new_compression_header
[function]
[call site]
03679
calloc
[call site]
03680
cram_new_block
[function]
[call site]
03681
kh_init_m_s2i
[function]
[call site]
03682
cram_free_block
[function]
[call site]
03683
string_pool_create
[function]
[call site]
03684
kh_destroy_m_s2i
[function]
[call site]
03685
cram_free_block
[function]
[call site]
03686
cram_stats_create
[function]
[call site]
03687
calloc
[call site]
03688
kh_init_m_tagmap
[function]
[call site]
03689
calloc
[call site]
03690
cram_free_block
[function]
[call site]
03691
cram_free_container
[function]
[call site]
03692
int32_put_blk
[function]
[call site]
03693
block_append
[function]
[call site]
03694
sam_hdr_str
[function]
[call site]
03695
block_append
[function]
[call site]
03696
cram_compress_block
[function]
[call site]
03697
cram_compress_block2
[function]
[call site]
03698
cram_free_block
[function]
[call site]
03699
cram_free_container
[function]
[call site]
03700
calloc
[call site]
03701
cram_free_block
[function]
[call site]
03702
cram_free_container
[function]
[call site]
03703
block_append
[function]
[call site]
03704
cram_write_container
[function]
[call site]
03705
cram_free_block
[function]
[call site]
03706
cram_free_container
[function]
[call site]
03707
cram_write_block
[function]
[call site]
03708
cram_free_block
[function]
[call site]
03709
cram_free_container
[function]
[call site]
03710
block_resize
[function]
[call site]
03711
cram_write_block
[function]
[call site]
03712
cram_free_block
[function]
[call site]
03713
cram_free_container
[function]
[call site]
03714
cram_free_block
[function]
[call site]
03715
cram_free_container
[function]
[call site]
03716
hflush
[function]
[call site]
03717
sam_hrecs_rebuild_text
[function]
[call site]
03718
strstr
[call site]
03719
bgzf_write
[function]
[call site]
03720
hwrite
[function]
[call site]
03721
kputsn
[function]
[call site]
03722
kputs
[function]
[call site]
03723
kputsn
[function]
[call site]
03724
kputw
[function]
[call site]
03725
kputc
[function]
[call site]
03726
bgzf_write
[function]
[call site]
03727
hwrite
[function]
[call site]
03728
bgzf_flush
[function]
[call site]
03729
hflush
[function]
[call site]
03730
__errno_location
[call site]
03731
sam_hdr_dup
[function]
[call site]
03732
sam_hdr_destroy
[function]
[call site]
03733
bam_init1
[function]
[call site]
03734
calloc
[call site]
03735
sam_read1
[function]
[call site]
03736
sam_read1_bam
[function]
[call site]
03737
bam_read1
[function]
[call site]
03738
bgzf_read_small
[function]
[call site]
03739
bgzf_read
[function]
[call site]
03740
ed_swap_4p
[function]
[call site]
03741
bgzf_read
[function]
[call site]
03742
le_to_u32
[function]
[call site]
03743
le_to_i32
[function]
[call site]
03744
le_to_u32
[function]
[call site]
03745
le_to_u32
[function]
[call site]
03746
le_to_u32
[function]
[call site]
03747
le_to_u32
[function]
[call site]
03748
le_to_i32
[function]
[call site]
03749
le_to_i32
[function]
[call site]
03750
realloc_bam_data
[function]
[call site]
03751
bgzf_read_small
[function]
[call site]
03752
fixup_missing_qname_nul
[function]
[call site]
03753
realloc_bam_data
[function]
[call site]
03754
bgzf_read_small
[function]
[call site]
03755
swap_data
[function]
[call site]
03756
ed_swap_4p
[function]
[call site]
03757
bam_tag2cigar
[function]
[call site]
03758
bam_cigar2rqlens
[function]
[call site]
03759
hts_reg2bin
[function]
[call site]
03760
hts_log
[function]
[call site]
03761
__errno_location
[call site]
03762
sam_read1_cram
[function]
[call site]
03763
cram_get_bam_seq
[function]
[call site]
03764
cram_get_seq
[function]
[call site]
03765
pthread_mutex_lock
[call site]
03766
pthread_mutex_unlock
[call site]
03767
cram_next_slice
[function]
[call site]
03768
cram_first_slice
[function]
[call site]
03769
cram_free_container
[function]
[call site]
03770
cram_read_container
[function]
[call site]
03771
cram_seek
[function]
[call site]
03772
cram_free_container
[function]
[call site]
03773
cram_read_container
[function]
[call site]
03774
cram_read_block
[function]
[call site]
03775
cram_decode_compression_header
[function]
[call site]
03776
calloc
[call site]
03777
cram_uncompress_block
[function]
[call site]
03778
hts_malloc_p
[function]
[call site]
03779
kh_init_map
[function]
[call site]
03780
cram_free_compression_header
[function]
[call site]
03781
cram_free_compression_header
[function]
[call site]
03782
kh_put_map
[function]
[call site]
03783
cram_free_compression_header
[function]
[call site]
03784
kh_put_map
[function]
[call site]
03785
cram_free_compression_header
[function]
[call site]
03786
kh_put_map
[function]
[call site]
03787
cram_free_compression_header
[function]
[call site]
03788
kh_put_map
[function]
[call site]
03789
cram_free_compression_header
[function]
[call site]
03790
cram_free_compression_header
[function]
[call site]
03791
kh_put_map
[function]
[call site]
03792
cram_free_compression_header
[function]
[call site]
03793
cram_decode_TD
[function]
[call site]
03794
cram_new_block
[function]
[call site]
03795
hts_log
[function]
[call site]
03796
cram_free_block
[function]
[call site]
03797
cram_free_block
[function]
[call site]
03798
cram_free_block
[function]
[call site]
03799
block_append
[function]
[call site]
03800
block_append_char
[function]
[call site]
03801
calloc
[call site]
03802
cram_free_block
[function]
[call site]
03803
cram_free_block
[function]
[call site]
03804
cram_free_compression_header
[function]
[call site]
03805
kh_put_map
[function]
[call site]
03806
cram_free_compression_header
[function]
[call site]
03807
hts_log
[function]
[call site]
03808
cram_free_compression_header
[function]
[call site]
03809
cram_free_compression_header
[function]
[call site]
03810
cram_free_compression_header
[function]
[call site]
03811
hts_log
[function]
[call site]
03812
hts_log
[function]
[call site]
03813
cram_decoder_init
[function]
[call site]
03814
cram_encoding2str
[function]
[call site]
03815
hts_log
[function]
[call site]
03816
cram_free_compression_header
[function]
[call site]
03817
cram_free_compression_header
[function]
[call site]
03818
cram_free_compression_header
[function]
[call site]
03819
cram_free_compression_header
[function]
[call site]
03820
cram_decoder_init
[function]
[call site]
03821
cram_free_compression_header
[function]
[call site]
03822
cram_free_compression_header
[function]
[call site]
03823
sam_hrecs_sort_order
[function]
[call site]
03824
TYPEKEY
[function]
[call site]
03825
kh_get_sam_hrecs_t
[function]
[call site]
03826
strcmp
[call site]
03827
strcmp
[call site]
03828
strcmp
[call site]
03829
strcmp
[call site]
03830
hts_log
[function]
[call site]
03831
pthread_mutex_lock
[call site]
03832
pthread_mutex_unlock
[call site]
03833
cram_free_slice
[function]
[call site]
03834
cram_free_container
[function]
[call site]
03835
cram_read_container
[function]
[call site]
03836
cram_free_container
[function]
[call site]
03837
cram_free_container
[function]
[call site]
03838
cram_free_container
[function]
[call site]
03839
cram_free_container
[function]
[call site]
03840
hseek
[function]
[call site]
03841
cram_read_block
[function]
[call site]
03842
cram_decode_compression_header
[function]
[call site]
03843
sam_hrecs_sort_order
[function]
[call site]
03844
pthread_mutex_lock
[call site]
03845
pthread_mutex_unlock
[call site]
03846
cram_free_container
[function]
[call site]
03847
cram_read_slice
[function]
[call site]
03848
cram_read_block
[function]
[call site]
03849
calloc
[call site]
03850
cram_decode_slice_header
[function]
[call site]
03851
cram_uncompress_block
[function]
[call site]
03852
calloc
[call site]
03853
hts_log
[function]
[call site]
03854
hts_malloc_p
[function]
[call site]
03855
cram_content_type2str
[function]
[call site]
03856
hts_log
[function]
[call site]
03857
hts_log
[function]
[call site]
03858
calloc
[call site]
03859
cram_read_block
[function]
[call site]
03860
calloc
[call site]
03861
hts_malloc_p
[function]
[call site]
03862
cram_new_block
[function]
[call site]
03863
cram_new_block
[function]
[call site]
03864
cram_new_block
[function]
[call site]
03865
cram_new_block
[function]
[call site]
03866
cram_new_block
[function]
[call site]
03867
cram_new_block
[function]
[call site]
03868
cram_free_block
[function]
[call site]
03869
cram_free_slice
[function]
[call site]
03870
cram_free_slice
[function]
[call site]
03871
cram_free_slice
[function]
[call site]
03872
cram_free_slice
[function]
[call site]
03873
cram_decode_slice_mt
[function]
[call site]
03874
cram_decode_slice
[function]
[call site]
03875
hts_tpool_process_sz
[function]
[call site]
03876
pthread_mutex_lock
[call site]
03877
pthread_mutex_unlock
[call site]
03878
__errno_location
[call site]
03879
__errno_location
[call site]
03880
hts_tpool_dispatch2
[function]
[call site]
03881
cram_decode_slice_thread
[function]
[call site]
03882
cram_decode_slice
[function]
[call site]
03883
__errno_location
[call site]
03884
__errno_location
[call site]
03885
hts_log
[function]
[call site]
03886
cram_free_slice
[function]
[call site]
03887
hts_tpool_process_len
[function]
[call site]
03888
pthread_mutex_lock
[call site]
03889
pthread_mutex_unlock
[call site]
03890
hts_tpool_process_qsize
[function]
[call site]
03891
hts_tpool_process_empty
[function]
[call site]
03892
hts_tpool_next_result_wait
[function]
[call site]
03893
hts_tpool_result_data
[function]
[call site]
03894
hts_log
[function]
[call site]
03895
hts_tpool_result_data
[function]
[call site]
03896
hts_log
[function]
[call site]
03897
hts_tpool_delete_result
[function]
[call site]
03898
hts_tpool_delete_result
[function]
[call site]
03899
cram_free_slice
[function]
[call site]
03900
cram_free_slice
[function]
[call site]
03901
bam_get_mempolicy
[function]
[call site]
03902
bam_copy1
[function]
[call site]
03903
realloc_bam_data
[function]
[call site]
03904
bam_set_mempolicy
[function]
[call site]
03905
cram_to_bam
[function]
[call site]
03906
cram_eof
[function]
[call site]
03907
sam_read1_sam
[function]
[call site]
03908
sam_parse1
[function]
[call site]
03909
strchr
[call site]
03910
hts_log
[function]
[call site]
03911
hts_log
[function]
[call site]
03912
possibly_expand_bam_data
[function]
[call site]
03913
parse_sam_flag
[function]
[call site]
03914
hts_str2uint
[function]
[call site]
03915
strtoul
[call site]
03916
strchr
[call site]
03917
strcmp
[call site]
03918
bam_name2id
[function]
[call site]
03919
sam_hdr_name2tid
[function]
[call site]
03920
sam_hdr_fill_hrecs
[function]
[call site]
03921
kh_get_m_s2i
[function]
[call site]
03922
hts_log
[function]
[call site]
03923
hts_strprint
[function]
[call site]
03924
isprint_c
[function]
[call site]
03925
__ctype_b_loc
[call site]
03926
strcpy
[call site]
03927
snprintf
[call site]
03928
hts_log
[function]
[call site]
03929
hts_str2uint
[function]
[call site]
03930
hts_log
[function]
[call site]
03931
hts_str2uint
[function]
[call site]
03932
bam_parse_cigar
[function]
[call site]
03933
hts_log
[function]
[call site]
03934
read_ncigar
[function]
[call site]
03935
isdigit_c
[function]
[call site]
03936
hts_log
[function]
[call site]
03937
hts_log
[function]
[call site]
03938
possibly_expand_bam_data
[function]
[call site]
03939
hts_log
[function]
[call site]
03940
parse_cigar
[function]
[call site]
03941
hts_str2uint
[function]
[call site]
03942
hts_log
[function]
[call site]
03943
hts_log
[function]
[call site]
03944
hts_log
[function]
[call site]
03945
bam_cigar2rlen
[function]
[call site]
03946
hts_log
[function]
[call site]
03947
strchr
[call site]
03948
hts_log
[function]
[call site]
03949
hts_reg2bin
[function]
[call site]
03950
strchr
[call site]
03951
strcmp
[call site]
03952
strcmp
[call site]
03953
bam_name2id
[function]
[call site]
03954
hts_log
[function]
[call site]
03955
hts_strprint
[function]
[call site]
03956
hts_str2uint
[function]
[call site]
03957
hts_log
[function]
[call site]
03958
hts_str2int
[function]
[call site]
03959
hts_log
[function]
[call site]
03960
strchr
[call site]
03961
strcmp
[call site]
03962
hts_log
[function]
[call site]
03963
possibly_expand_bam_data
[function]
[call site]
03964
possibly_expand_bam_data
[function]
[call site]
03965
hts_log
[function]
[call site]
03966
hts_log
[function]
[call site]
03967
aux_parse
[function]
[call site]
03968
hts_log
[function]
[call site]
03969
isspace_c
[function]
[call site]
03970
hts_log
[function]
[call site]
03971
isspace_c
[function]
[call site]
03972
isspace_c
[function]
[call site]
03973
kh_get_tag
[function]
[call site]
03974
possibly_expand_bam_data
[function]
[call site]
03975
isspace_c
[function]
[call site]
03976
hts_log
[function]
[call site]
03977
possibly_expand_bam_data
[function]
[call site]
03978
hts_str2int
[function]
[call site]
03979
i16_to_le
[function]
[call site]
03980
u16_to_le
[function]
[call site]
03981
i32_to_le
[function]
[call site]
03982
u32_to_le
[function]
[call site]
03983
hts_str2uint
[function]
[call site]
03984
u16_to_le
[function]
[call site]
03985
u32_to_le
[function]
[call site]
03986
strtod
[call site]
03987
float_to_le
[function]
[call site]
03988
u32_to_le
[function]
[call site]
03989
strtod
[call site]
03990
double_to_le
[function]
[call site]
03991
u64_to_le
[function]
[call site]
03992
strchr
[call site]
03993
strlen
[call site]
03994
isspace_c
[function]
[call site]
03995
hts_log
[function]
[call site]
03996
possibly_expand_bam_data
[function]
[call site]
03997
isspace_c
[function]
[call site]
03998
hts_log
[function]
[call site]
03999
sam_parse_B_vals
[function]
[call site]
04000
sam_parse_B_vals_r
[function]
[call site]
04001
hts_log
[function]
[call site]
04002
aux_type2size
[function]
[call site]
04003
hts_log
[function]
[call site]
04004
possibly_expand_bam_data
[function]
[call site]
04005
hts_log
[function]
[call site]
04006
sam_parse_Bc_vals
[function]
[call site]
04007
grow_B_array
[function]
[call site]
04008
__errno_location
[call site]
04009
possibly_expand_bam_data
[function]
[call site]
04010
hts_log
[function]
[call site]
04011
hts_str2int
[function]
[call site]
04012
sam_parse_BC_vals
[function]
[call site]
04013
grow_B_array
[function]
[call site]
04014
hts_str2uint
[function]
[call site]
04015
sam_parse_Bs_vals
[function]
[call site]
04016
grow_B_array
[function]
[call site]
04017
hts_str2int
[function]
[call site]
04018
i16_to_le
[function]
[call site]
04019
sam_parse_BS_vals
[function]
[call site]
04020
grow_B_array
[function]
[call site]
04021
hts_str2uint
[function]
[call site]
04022
u16_to_le
[function]
[call site]
04023
sam_parse_Bi_vals
[function]
[call site]
04024
grow_B_array
[function]
[call site]
04025
hts_str2int
[function]
[call site]
04026
i32_to_le
[function]
[call site]
04027
sam_parse_BI_vals
[function]
[call site]
04028
grow_B_array
[function]
[call site]
04029
hts_str2uint
[function]
[call site]
04030
u32_to_le
[function]
[call site]
04031
sam_parse_Bf_vals
[function]
[call site]
04032
grow_B_array
[function]
[call site]
04033
strtod
[call site]
04034
float_to_le
[function]
[call site]
04035
hts_log
[function]
[call site]
04036
i32_to_le
[function]
[call site]
04037
hts_str2int
[function]
[call site]
04038
sam_parse_B_vals_r
[function]
[call site]
04039
sam_parse_B_vals_r
[function]
[call site]
04040
sam_parse_B_vals_r
[function]
[call site]
04041
sam_parse_B_vals_r
[function]
[call site]
04042
sam_parse_B_vals_r
[function]
[call site]
04043
sam_parse_B_vals_r
[function]
[call site]
04044
hts_log
[function]
[call site]
04045
isspace_c
[function]
[call site]
04046
hts_strprint
[function]
[call site]
04047
hts_log
[function]
[call site]
04048
isspace_c
[function]
[call site]
04049
hts_log
[function]
[call site]
04050
bam_tag2cigar
[function]
[call site]
04051
bam_cigar2qlen
[function]
[call site]
04052
hts_log
[function]
[call site]
04053
sam_state_destroy
[function]
[call site]
04054
__errno_location
[call site]
04055
bgzf_seek
[function]
[call site]
04056
bgzf_seek_common
[function]
[call site]
04057
sam_hdr_fill_hrecs
[function]
[call site]
04058
pthread_create
[call site]
04059
sam_dispatcher_read
[function]
[call site]
04060
ks_resize
[function]
[call site]
04061
pthread_mutex_lock
[call site]
04062
pthread_cond_signal
[call site]
04063
pthread_mutex_unlock
[call site]
04064
hts_tpool_process_shutdown
[function]
[call site]
04065
pthread_mutex_unlock
[call site]
04066
pthread_mutex_lock
[call site]
04067
pthread_mutex_unlock
[call site]
04068
calloc
[call site]
04069
hts_malloc_ps
[function]
[call site]
04070
hts_realloc_ps
[function]
[call site]
04071
hts_add_sat2
[function]
[call site]
04072
hts_prod_sat2
[function]
[call site]
04073
hts_realloc
[function]
[call site]
04074
bgzf_read
[function]
[call site]
04075
hread
[function]
[call site]
04076
__errno_location
[call site]
04077
sam_state_err
[function]
[call site]
04078
hts_realloc_pse
[function]
[call site]
04079
hts_add_sat2
[function]
[call site]
04080
hts_prod_sat2
[function]
[call site]
04081
hts_add_sat2
[function]
[call site]
04082
hts_realloc
[function]
[call site]
04083
__assert_fail
[call site]
04084
__assert_fail
[call site]
04085
__assert_fail
[call site]
04086
ks_resize
[function]
[call site]
04087
hts_tpool_dispatch3
[function]
[call site]
04088
sam_parse_worker
[function]
[call site]
04089
pthread_mutex_lock
[call site]
04090
calloc
[call site]
04091
calloc
[call site]
04092
sam_state_err
[function]
[call site]
04093
sam_state_err
[function]
[call site]
04094
hts_realloc_p
[function]
[call site]
04095
sam_state_err
[function]
[call site]
04096
strchr
[call site]
04097
sam_parse1
[function]
[call site]
04098
__errno_location
[call site]
04099
sam_state_err
[function]
[call site]
04100
cleanup_sp_lines
[function]
[call site]
04101
__assert_fail
[call site]
04102
sam_free_sp_bams
[function]
[call site]
04103
pthread_mutex_lock
[call site]
04104
pthread_mutex_unlock
[call site]
04105
sam_free_sp_bams
[function]
[call site]
04106
cleanup_sp_lines
[function]
[call site]
04107
cleanup_sp_bams
[function]
[call site]
04108
sam_free_sp_bams
[function]
[call site]
04109
pthread_mutex_lock
[call site]
04110
pthread_mutex_unlock
[call site]
04111
pthread_mutex_unlock
[call site]
04112
hts_tpool_dispatch
[function]
[call site]
04113
sam_parse_eof
[function]
[call site]
04114
pthread_mutex_lock
[call site]
04115
pthread_cond_wait
[call site]
04116
pthread_cond_signal
[call site]
04117
pthread_mutex_unlock
[call site]
04118
hts_tpool_process_shutdown
[function]
[call site]
04119
pthread_mutex_unlock
[call site]
04120
pthread_mutex_lock
[call site]
04121
pthread_cond_signal
[call site]
04122
pthread_mutex_unlock
[call site]
04123
pthread_mutex_lock
[call site]
04124
pthread_mutex_unlock
[call site]
04125
__errno_location
[call site]
04126
sam_state_err
[function]
[call site]
04127
hts_tpool_process_shutdown
[function]
[call site]
04128
hts_log
[function]
[call site]
04129
__errno_location
[call site]
04130
pthread_mutex_lock
[call site]
04131
pthread_mutex_unlock
[call site]
04132
hts_tpool_next_result_wait
[function]
[call site]
04133
hts_tpool_result_data
[function]
[call site]
04134
hts_tpool_delete_result
[function]
[call site]
04135
pthread_mutex_lock
[call site]
04136
pthread_mutex_unlock
[call site]
04137
bam_copy1
[function]
[call site]
04138
pthread_mutex_lock
[call site]
04139
pthread_mutex_unlock
[call site]
04140
hts_getline
[function]
[call site]
04141
sam_parse1
[function]
[call site]
04142
hts_log
[function]
[call site]
04143
fastq_state_init
[function]
[call site]
04144
fastq_parse1
[function]
[call site]
04145
hts_getline
[function]
[call site]
04146
strpbrk
[call site]
04147
isspace_c
[function]
[call site]
04148
isspace_c
[function]
[call site]
04149
hts_getline
[function]
[call site]
04150
kputsn
[function]
[call site]
04151
hts_getline
[function]
[call site]
04152
kputsn
[function]
[call site]
04153
isdigit_c
[function]
[call site]
04154
regexec
[call site]
04155
hts_log
[function]
[call site]
04156
isalpha_c
[function]
[call site]
04157
bam_set1
[function]
[call site]
04158
bam_aux_append
[function]
[call site]
04159
__assert_fail
[call site]
04160
realloc_bam_data
[function]
[call site]
04161
__errno_location
[call site]
04162
isdigit_c
[function]
[call site]
04163
strtol
[call site]
04164
isdigit_c
[function]
[call site]
04165
isspace_c
[function]
[call site]
04166
bam_aux_append
[function]
[call site]
04167
aux_parse
[function]
[call site]
04168
__errno_location
[call site]
04169
__errno_location
[call site]
04170
sam_passes_filter
[function]
[call site]
04171
hts_filter_eval2
[function]
[call site]
04172
ks_free
[function]
[call site]
04173
hts_filter_eval_
[function]
[call site]
04174
expression
[function]
[call site]
04175
hts_log
[function]
[call site]
04176
hts_expr_val_undef
[function]
[call site]
04177
ks_clear
[function]
[call site]
04178
and_expr
[function]
[call site]
04179
eq_expr
[function]
[call site]
04180
cmp_expr
[function]
[call site]
04181
bitor_expr
[function]
[call site]
04182
bitxor_expr
[function]
[call site]
04183
bitand_expr
[function]
[call site]
04184
add_expr
[function]
[call site]
04185
mul_expr
[function]
[call site]
04186
unary_expr
[function]
[call site]
04187
ws
[function]
[call site]
04188
simple_expr
[function]
[call site]
04189
ws
[function]
[call site]
04190
expression
[function]
[call site]
04191
ws
[function]
[call site]
04192
fprintf
[call site]
04193
hts_str2dbl
[function]
[call site]
04194
ks_clear
[function]
[call site]
04198
kputsn
[function]
[call site]
04199
func_expr
[function]
[call site]
04200
strncmp
[call site]
04201
expression
[function]
[call site]
04202
expr_func_avg
[function]
[call site]
04203
strncmp
[call site]
04204
expression
[function]
[call site]
04205
ws
[function]
[call site]
04206
expression
[function]
[call site]
04207
hts_expr_val_free
[function]
[call site]
04208
ks_free
[function]
[call site]
04209
hts_expr_val_existsT
[function]
[call site]
04210
hts_expr_val_exists
[function]
[call site]
04211
hts_expr_val_free
[function]
[call site]
04212
strncmp
[call site]
04213
expression
[function]
[call site]
04214
hts_expr_val_existsT
[function]
[call site]
04215
strncmp
[call site]
04216
expression
[function]
[call site]
04217
exp
[call site]
04218
hts_expr_val_undef
[function]
[call site]
04219
strncmp
[call site]
04220
expression
[function]
[call site]
04221
expr_func_length
[function]
[call site]
04222
strncmp
[call site]
04223
expression
[function]
[call site]
04224
log
[call site]
04225
hts_expr_val_undef
[function]
[call site]
04226
strncmp
[call site]
04227
expression
[function]
[call site]
04228
expr_func_min
[function]
[call site]
04229
strncmp
[call site]
04230
expression
[function]
[call site]
04231
expr_func_max
[function]
[call site]
04232
strncmp
[call site]
04233
expression
[function]
[call site]
04234
ws
[function]
[call site]
04235
expression
[function]
[call site]
04236
hts_expr_val_free
[function]
[call site]
04237
hts_expr_val_exists
[function]
[call site]
04238
hts_expr_val_undef
[function]
[call site]
04239
hts_expr_val_free
[function]
[call site]
04240
hts_expr_val_free
[function]
[call site]
04241
pow
[call site]
04242
hts_expr_val_free
[function]
[call site]
04243
hts_expr_val_undef
[function]
[call site]
04244
strncmp
[call site]
04245
expression
[function]
[call site]
04246
sqrt
[call site]
04247
hts_expr_val_undef
[function]
[call site]
04248
ws
[function]
[call site]
04249
fprintf
[call site]
04250
hts_expr_val_exists
[function]
[call site]
04251
hts_expr_val_undef
[function]
[call site]
04252
unary_expr
[function]
[call site]
04253
hts_expr_val_exists
[function]
[call site]
04254
IS_VALID
[function]
[call site]
04255
hts_expr_val_undef
[function]
[call site]
04256
unary_expr
[function]
[call site]
04257
hts_expr_val_exists
[function]
[call site]
04258
hts_expr_val_undef
[function]
[call site]
04259
hts_expr_val_exists
[function]
[call site]
04260
hts_expr_val_undef
[function]
[call site]
04261
IS_VALID
[function]
[call site]
04262
hts_expr_val_undef
[function]
[call site]
04263
simple_expr
[function]
[call site]
04264
ws
[function]
[call site]
04265
unary_expr
[function]
[call site]
04266
hts_expr_val_free
[function]
[call site]
04267
hts_expr_val_exists
[function]
[call site]
04268
hts_expr_val_undef
[function]
[call site]
04269
hts_expr_val_free
[function]
[call site]
04270
IS_VALID
[function]
[call site]
04271
hts_expr_val_undef
[function]
[call site]
04272
hts_expr_val_exists
[function]
[call site]
04273
hts_expr_val_free
[function]
[call site]
04274
ws
[function]
[call site]
04275
mul_expr
[function]
[call site]
04276
hts_expr_val_free
[function]
[call site]
04277
hts_expr_val_exists
[function]
[call site]
04278
hts_expr_val_free
[function]
[call site]
04279
hts_expr_val_undef
[function]
[call site]
04280
hts_expr_val_free
[function]
[call site]
04281
ws
[function]
[call site]
04282
add_expr
[function]
[call site]
04283
hts_expr_val_free
[function]
[call site]
04284
hts_expr_val_exists
[function]
[call site]
04285
hts_expr_val_free
[function]
[call site]
04286
IS_VALID
[function]
[call site]
04287
hts_expr_val_undef
[function]
[call site]
04288
hts_expr_val_free
[function]
[call site]
04289
hts_expr_val_free
[function]
[call site]
04290
hts_expr_val_undef
[function]
[call site]
04291
ws
[function]
[call site]
04292
bitand_expr
[function]
[call site]
04293
hts_expr_val_free
[function]
[call site]
04294
hts_expr_val_exists
[function]
[call site]
04295
hts_expr_val_free
[function]
[call site]
04296
IS_VALID
[function]
[call site]
04297
hts_expr_val_undef
[function]
[call site]
04298
hts_expr_val_free
[function]
[call site]
04299
hts_expr_val_free
[function]
[call site]
04300
hts_expr_val_undef
[function]
[call site]
04301
ws
[function]
[call site]
04302
bitxor_expr
[function]
[call site]
04303
hts_expr_val_free
[function]
[call site]
04304
hts_expr_val_exists
[function]
[call site]
04305
hts_expr_val_free
[function]
[call site]
04306
IS_VALID
[function]
[call site]
04307
hts_expr_val_undef
[function]
[call site]
04308
hts_expr_val_free
[function]
[call site]
04309
hts_expr_val_free
[function]
[call site]
04310
hts_expr_val_undef
[function]
[call site]
04311
ws
[function]
[call site]
04312
cmp_expr
[function]
[call site]
04313
hts_expr_val_exists
[function]
[call site]
04314
hts_expr_val_undef
[function]
[call site]
04315
strcmp
[call site]
04316
cmp_expr
[function]
[call site]
04317
hts_expr_val_exists
[function]
[call site]
04318
hts_expr_val_undef
[function]
[call site]
04319
strcmp
[call site]
04320
cmp_expr
[function]
[call site]
04321
hts_expr_val_exists
[function]
[call site]
04322
hts_expr_val_undef
[function]
[call site]
04323
strcmp
[call site]
04324
cmp_expr
[function]
[call site]
04325
hts_expr_val_exists
[function]
[call site]
04326
hts_expr_val_undef
[function]
[call site]
04327
strcmp
[call site]
04328
hts_expr_val_exists
[function]
[call site]
04329
hts_expr_val_undef
[function]
[call site]
04330
hts_expr_val_free
[function]
[call site]
04331
ws
[function]
[call site]
04332
eq_expr
[function]
[call site]
04333
hts_expr_val_exists
[function]
[call site]
04334
hts_expr_val_undef
[function]
[call site]
04335
strcmp
[call site]
04336
eq_expr
[function]
[call site]
04337
hts_expr_val_exists
[function]
[call site]
04338
hts_expr_val_undef
[function]
[call site]
04339
strcmp
[call site]
04340
eq_expr
[function]
[call site]
04341
hts_expr_val_free
[function]
[call site]
04342
regcomp
[call site]
04343
regerror
[call site]
04344
fprintf
[call site]
04345
hts_expr_val_undef
[function]
[call site]
04346
hts_expr_val_free
[function]
[call site]
04347
regexec
[call site]
04348
regfree
[call site]
04349
hts_expr_val_exists
[function]
[call site]
04350
hts_expr_val_undef
[function]
[call site]
04351
hts_expr_val_free
[function]
[call site]
04352
ws
[function]
[call site]
04353
eq_expr
[function]
[call site]
04354
hts_expr_val_free
[function]
[call site]
04355
hts_expr_val_existsT
[function]
[call site]
04356
hts_expr_val_undef
[function]
[call site]
04357
eq_expr
[function]
[call site]
04358
hts_expr_val_free
[function]
[call site]
04359
hts_expr_val_existsT
[function]
[call site]
04360
hts_expr_val_undef
[function]
[call site]
04361
hts_expr_val_existsT
[function]
[call site]
04362
hts_expr_val_undef
[function]
[call site]
04363
hts_expr_val_existsT
[function]
[call site]
04364
hts_expr_val_undef
[function]
[call site]
04365
hts_expr_val_free
[function]
[call site]
04366
ws
[function]
[call site]
04367
fprintf
[call site]
04368
hts_expr_val_exists
[function]
[call site]
04369
bam_sym_lookup
[function]
[call site]
04370
memcmp
[call site]
04371
ks_clear
[function]
[call site]
04372
kputw
[function]
[call site]
04373
kputc_
[function]
[call site]
04374
kputs
[function]
[call site]
04375
kputs
[function]
[call site]
04376
memcmp
[call site]
04377
bam_endpos
[function]
[call site]
04378
memcmp
[call site]
04379
memcmp
[call site]
04380
memcmp
[call site]
04381
memcmp
[call site]
04382
memcmp
[call site]
04383
memcmp
[call site]
04384
memcmp
[call site]
04385
memcmp
[call site]
04386
memcmp
[call site]
04387
memcmp
[call site]
04388
memcmp
[call site]
04389
memcmp
[call site]
04390
memcmp
[call site]
04391
hts_log
[function]
[call site]
04392
memcmp
[call site]
04393
memcmp
[call site]
04394
bam_get_library
[function]
[call site]
04395
bam_aux_get
[function]
[call site]
04396
sam_hdr_find_tag_id
[function]
[call site]
04397
ks_clear
[function]
[call site]
04398
kputs
[function]
[call site]
04399
memcmp
[call site]
04400
memcmp
[call site]
04401
memcmp
[call site]
04402
sam_hdr_tid2name
[function]
[call site]
04403
ks_clear
[function]
[call site]
04404
kputs
[function]
[call site]
04405
memcmp
[call site]
04406
memcmp
[call site]
04407
memcmp
[call site]
04408
memcmp
[call site]
04409
memcmp
[call site]
04410
bam_cigar2qlen
[function]
[call site]
04411
memcmp
[call site]
04412
ks_clear
[function]
[call site]
04413
kputs
[function]
[call site]
04414
memcmp
[call site]
04415
ks_clear
[function]
[call site]
04416
ks_resize
[function]
[call site]
04417
memcmp
[call site]
04418
bam_cigar2rlen
[function]
[call site]
04419
memcmp
[call site]
04420
sam_hdr_tid2name
[function]
[call site]
04421
ks_clear
[function]
[call site]
04422
kputs
[function]
[call site]
04423
memcmp
[call site]
04424
sam_hdr_tid2name
[function]
[call site]
04425
ks_clear
[function]
[call site]
04426
kputs
[function]
[call site]
04427
memcmp
[call site]
04428
memcmp
[call site]
04429
ks_clear
[function]
[call site]
04430
ks_resize
[function]
[call site]
04431
nibble2base
[function]
[call site]
04432
memcmp
[call site]
04433
memcmp
[call site]
04434
bam_aux_get
[function]
[call site]
04435
ks_clear
[function]
[call site]
04436
kputs
[function]
[call site]
04437
ks_clear
[function]
[call site]
04438
kputsn
[function]
[call site]
04439
bam_aux2i
[function]
[call site]
04440
get_int_aux_val
[function]
[call site]
04441
le_to_i8
[function]
[call site]
04442
le_to_i16
[function]
[call site]
04443
le_to_u16
[function]
[call site]
04444
le_to_i32
[function]
[call site]
04445
le_to_u32
[function]
[call site]
04446
__errno_location
[call site]
04447
bam_aux2f
[function]
[call site]
04448
le_to_double
[function]
[call site]
04449
le_to_float
[function]
[call site]
04450
get_int_aux_val
[function]
[call site]
04451
hts_log
[function]
[call site]
04452
hts_log
[function]
[call site]
04453
hts_expr_val_free
[function]
[call site]
04454
hts_expr_val_free
[function]
[call site]
04455
sam_write1
[function]
[call site]
04456
bam_write_idx1
[function]
[call site]
04457
bam_write1
[function]
[call site]
04458
hts_log
[function]
[call site]
04459
__errno_location
[call site]
04460
hts_log
[function]
[call site]
04461
bgzf_flush_try
[function]
[call site]
04462
lazy_flush
[function]
[call site]
04463
ed_swap_4p
[function]
[call site]
04464
ed_swap_4p
[function]
[call site]
04465
bgzf_write_small
[function]
[call site]
04466
bgzf_write
[function]
[call site]
04467
swap_data
[function]
[call site]
04468
bgzf_write_small
[function]
[call site]
04469
bgzf_write_small
[function]
[call site]
04470
bgzf_write_small
[function]
[call site]
04471
bgzf_write_small
[function]
[call site]
04472
bam_cigar2rlen
[function]
[call site]
04473
u32_to_le
[function]
[call site]
04474
u32_to_le
[function]
[call site]
04475
bgzf_write_small
[function]
[call site]
04476
bgzf_write_small
[function]
[call site]
04477
bgzf_write_small
[function]
[call site]
04478
u32_to_le
[function]
[call site]
04479
bgzf_write_small
[function]
[call site]
04480
bgzf_write_small
[function]
[call site]
04481
swap_data
[function]
[call site]
04482
bgzf_flush_try
[function]
[call site]
04483
hts_idx_amend_last
[function]
[call site]
04484
bam_write1
[function]
[call site]
04485
bam_endpos
[function]
[call site]
04486
bgzf_idx_push
[function]
[call site]
04487
hts_idx_push
[function]
[call site]
04488
hts_idx_check_range
[function]
[call site]
04489
hts_idx_maxpos
[function]
[call site]
04490
hts_bin_maxpos
[function]
[call site]
04491
hts_log
[function]
[call site]
04492
idx_format_name
[function]
[call site]
04493
__errno_location
[call site]
04494
hts_realloc_p
[function]
[call site]
04495
hts_realloc_p
[function]
[call site]
04496
hts_log
[function]
[call site]
04497
hts_log
[function]
[call site]
04498
hts_log
[function]
[call site]
04499
hts_log
[function]
[call site]
04500
kh_init_bin
[function]
[call site]
04501
calloc
[call site]
04502
insert_to_l
[function]
[call site]
04503
hts_realloc_p
[function]
[call site]
04504
hts_reg2bin
[function]
[call site]
04505
insert_to_b
[function]
[call site]
04506
kh_put_bin
[function]
[call site]
04507
kh_resize_bin
[function]
[call site]
04508
__errno_location
[call site]
04509
realloc
[call site]
04510
calloc
[call site]
04511
kh_del_bin
[function]
[call site]
04512
hts_realloc_p
[function]
[call site]
04513
insert_to_b
[function]
[call site]
04514
insert_to_b
[function]
[call site]
04515
hts_idx_check_range
[function]
[call site]
04516
pthread_mutex_lock
[call site]
04517
hts_realloc_p
[function]
[call site]
04518
pthread_mutex_unlock
[call site]
04519
pthread_mutex_unlock
[call site]
04520
sam_hdr_tid2name
[function]
[call site]
04521
sam_hdr_tid2len
[function]
[call site]
04522
kh_get_s2i
[function]
[call site]
04523
hts_log
[function]
[call site]
04524
cram_put_bam_seq
[function]
[call site]
04525
hts_log
[function]
[call site]
04526
__errno_location
[call site]
04527
cram_new_container
[function]
[call site]
04528
pthread_mutex_lock
[call site]
04529
pthread_mutex_unlock
[call site]
04530
hts_log
[function]
[call site]
04531
pthread_mutex_lock
[call site]
04532
hts_log
[function]
[call site]
04533
pthread_mutex_unlock
[call site]
04534
cram_next_container
[function]
[call site]
04535
cram_update_curr_slice
[function]
[call site]
04536
hts_log
[function]
[call site]
04537
cram_flush_container_mt
[function]
[call site]
04538
cram_free_slice
[function]
[call site]
04539
cram_free_container
[function]
[call site]
04540
cram_new_container
[function]
[call site]
04541
pthread_mutex_lock
[call site]
04542
pthread_mutex_unlock
[call site]
04543
cram_new_slice
[function]
[call site]
04544
calloc
[call site]
04545
calloc
[call site]
04546
hts_malloc_p
[function]
[call site]
04547
hts_malloc_p
[function]
[call site]
04548
cram_new_block
[function]
[call site]
04549
cram_new_block
[function]
[call site]
04550
cram_new_block
[function]
[call site]
04551
cram_new_block
[function]
[call site]
04552
cram_new_block
[function]
[call site]
04553
cram_new_block
[function]
[call site]
04554
string_pool_create
[function]
[call site]
04555
kh_init_m_s2i
[function]
[call site]
04556
kh_init_m_s2i
[function]
[call site]
04557
cram_free_slice
[function]
[call site]
04558
pthread_mutex_lock
[call site]
04559
hts_log
[function]
[call site]
04560
pthread_mutex_unlock
[call site]
04561
pthread_mutex_lock
[call site]
04562
calloc
[call site]
04563
pthread_mutex_unlock
[call site]
04564
pthread_mutex_lock
[call site]
04565
calloc
[call site]
04566
pthread_mutex_unlock
[call site]
04567
pthread_mutex_lock
[call site]
04568
pthread_mutex_unlock
[call site]
04569
pthread_mutex_lock
[call site]
04570
hts_realloc_p
[function]
[call site]
04571
pthread_mutex_unlock
[call site]
04572
bam_set_mempolicy
[function]
[call site]
04573
calloc
[call site]
04574
pthread_mutex_unlock
[call site]
04575
bam_set_mempolicy
[function]
[call site]
04576
pthread_mutex_unlock
[call site]
04577
bam_copy1
[function]
[call site]
04578
bam_cigar2qlen
[function]
[call site]
04579
hts_log
[function]
[call site]
04580
pthread_create
[call site]
04581
sam_dispatcher_write
[function]
[call site]
04582
hts_tpool_next_result_wait
[function]
[call site]
04583
hts_tpool_result_data
[function]
[call site]
04584
sam_state_err
[function]
[call site]
04585
bgzf_flush_try
[function]
[call site]
04586
bgzf_write
[function]
[call site]
04587
hwrite
[function]
[call site]
04588
bam_endpos
[function]
[call site]
04589
bgzf_idx_push
[function]
[call site]
04590
__errno_location
[call site]
04591
sam_state_err
[function]
[call site]
04592
sam_hdr_tid2name
[function]
[call site]
04593
sam_hdr_tid2len
[function]
[call site]
04594
hts_log
[function]
[call site]
04595
bam_endpos
[function]
[call site]
04596
hts_idx_push
[function]
[call site]
04597
__errno_location
[call site]
04598
sam_state_err
[function]
[call site]
04599
sam_hdr_tid2name
[function]
[call site]
04600
sam_hdr_tid2len
[function]
[call site]
04601
hts_log
[function]
[call site]
04602
__assert_fail
[call site]
04603
pthread_mutex_lock
[call site]
04604
pthread_mutex_unlock
[call site]
04605
bgzf_write
[function]
[call site]
04606
bgzf_flush_try
[function]
[call site]
04607
bgzf_write
[function]
[call site]
04608
hwrite
[function]
[call site]
04609
hts_tpool_delete_result
[function]
[call site]
04610
pthread_mutex_lock
[call site]
04611
pthread_mutex_unlock
[call site]
04612
sam_state_err
[function]
[call site]
04613
hts_tpool_process_shutdown
[function]
[call site]
04614
__errno_location
[call site]
04615
sam_state_err
[function]
[call site]
04616
hts_log
[function]
[call site]
04617
pthread_mutex_lock
[call site]
04618
pthread_mutex_unlock
[call site]
04619
pthread_mutex_unlock
[call site]
04620
calloc
[call site]
04621
calloc
[call site]
04622
bam_copy1
[function]
[call site]
04623
pthread_mutex_lock
[call site]
04624
pthread_mutex_unlock
[call site]
04625
hts_tpool_dispatch3
[function]
[call site]
04626
sam_format_worker
[function]
[call site]
04627
cleanup_sp_bams
[function]
[call site]
04628
cleanup_sp_lines
[function]
[call site]
04629
pthread_mutex_unlock
[call site]
04630
pthread_mutex_unlock
[call site]
04631
sam_format1
[function]
[call site]
04632
sam_format1_append
[function]
[call site]
04633
kputc
[function]
[call site]
04634
bgzf_flush_try
[function]
[call site]
04635
bgzf_write
[function]
[call site]
04636
hwrite
[function]
[call site]
04637
bam_endpos
[function]
[call site]
04638
bgzf_idx_push
[function]
[call site]
04639
sam_hdr_tid2name
[function]
[call site]
04640
sam_hdr_tid2len
[function]
[call site]
04641
hts_log
[function]
[call site]
04642
bam_endpos
[function]
[call site]
04643
hts_idx_push
[function]
[call site]
04644
sam_hdr_tid2name
[function]
[call site]
04645
sam_hdr_tid2len
[function]
[call site]
04646
hts_log
[function]
[call site]
04647
fastq_state_init
[function]
[call site]
04648
fastq_format1
[function]
[call site]
04649
kputc
[function]
[call site]
04650
kputs
[function]
[call site]
04651
bam_aux_get
[function]
[call site]
04652
kputc
[function]
[call site]
04653
isalpha_c
[function]
[call site]
04654
toupper_c
[function]
[call site]
04655
kputc
[function]
[call site]
04656
kputs
[function]
[call site]
04657
kputs
[function]
[call site]
04658
kputs
[function]
[call site]
04659
bam_aux_get
[function]
[call site]
04660
ksprintf
[function]
[call site]
04661
isupper_c
[function]
[call site]
04662
__ctype_b_loc
[call site]
04663
islower_c
[function]
[call site]
04664
__ctype_b_loc
[call site]
04665
hts_log
[function]
[call site]
04666
strlen
[call site]
04667
strlen
[call site]
04668
isalpha_c
[function]
[call site]
04669
islower_c
[function]
[call site]
04670
toupper_c
[function]
[call site]
04671
kh_get_tag
[function]
[call site]
04672
kputc_
[function]
[call site]
04673
sam_format_aux1
[function]
[call site]
04674
skip_aux
[function]
[call site]
04675
kputsn
[function]
[call site]
04676
ks_resize
[function]
[call site]
04677
kputc_
[function]
[call site]
04678
kputc_
[function]
[call site]
04679
kputc_
[function]
[call site]
04680
kputsn
[function]
[call site]
04681
kputc_
[function]
[call site]
04682
kputc_
[function]
[call site]
04683
kputc_
[function]
[call site]
04684
kputc
[function]
[call site]
04685
bgzf_flush_try
[function]
[call site]
04686
bgzf_write
[function]
[call site]
04687
hwrite
[function]
[call site]
04688
__errno_location
[call site]
04689
bam_destroy1
[function]
[call site]
04690
sam_hdr_destroy
[function]
[call site]
04691
hts_close_or_abort
[function]
[call site]
04692
hts_close
[function]
[call site]
04693
hts_close
[function]
[call site]
04694
view_sam
[function]
[call site]
04695
view_sam
[function]
[call site]
04696
view_vcf
[function]
[call site]
04697
abort
[call site]
04698
hopen
[function]
[call site]
04699
hts_hopen
[function]
[call site]
04700
hclose
[function]
[call site]
04701
abort
[call site]
04702
hts_open
[function]
[call site]
04703
abort
[call site]
04704
bcf_hdr_read
[function]
[call site]
04705
vcf_hdr_read
[function]
[call site]
04706
bcf_hdr_init
[function]
[call site]
04707
calloc
[call site]
04708
kh_init_vdict
[function]
[call site]
04709
calloc
[call site]
04710
kh_resize_vdict
[function]
[call site]
04711
__errno_location
[call site]
04712
realloc
[call site]
04713
__ac_FNV1a_hash_string
[function]
[call site]
04714
calloc
[call site]
04715
kh_init_hdict
[function]
[call site]
04716
strchr
[call site]
04717
bcf_hdr_append
[function]
[call site]
04718
bcf_hdr_parse_line
[function]
[call site]
04719
calloc
[call site]
04720
hts_malloc_ps
[function]
[call site]
04721
hts_malloc_p
[function]
[call site]
04722
isalpha_c
[function]
[call site]
04723
isalnum_c
[function]
[call site]
04724
bcf_hrec_add_key
[function]
[call site]
04725
__assert_fail
[call site]
04726
hts_realloc_p
[function]
[call site]
04727
hts_realloc_p
[function]
[call site]
04728
hts_malloc_ps
[function]
[call site]
04729
is_escaped
[function]
[call site]
04730
bcf_hrec_set_val
[function]
[call site]
04731
__errno_location
[call site]
04732
hts_malloc_ps
[function]
[call site]
04733
__errno_location
[call site]
04734
hts_malloc_ps
[function]
[call site]
04735
isspace_c
[function]
[call site]
04736
hts_strprint
[function]
[call site]
04737
hts_log
[function]
[call site]
04738
bcf_hrec_destroy
[function]
[call site]
04739
hts_strprint
[function]
[call site]
04740
hts_log
[function]
[call site]
04741
bcf_hrec_destroy
[function]
[call site]
04742
bcf_hdr_add_hrec
[function]
[call site]
04743
get_hdr_aux
[function]
[call site]
04744
bcf_hrec_check
[function]
[call site]
04745
bcf_hrec_set_type
[function]
[call site]
04746
strcmp
[call site]
04747
strcmp
[call site]
04748
strcmp
[call site]
04749
strcmp
[call site]
04750
bcf_hrec_find_key
[function]
[call site]
04751
strcasecmp
[call site]
04752
bcf_hrec_find_key
[function]
[call site]
04753
strcmp
[call site]
04754
bcf_hrec_find_key
[function]
[call site]
04755
hts_log
[function]
[call site]
04756
hts_log
[function]
[call site]
04757
hts_log
[function]
[call site]
04758
bcf_hdr_register_hrec
[function]
[call site]
04759
bcf_hrec_set_type
[function]
[call site]
04760
bcf_hdr_register_hrec_ctg
[function]
[call site]
04761
bcf_hrec_find_key
[function]
[call site]
04762
bcf_hrec_find_key
[function]
[call site]
04763
strtoll
[call site]
04764
hts_log
[function]
[call site]
04765
strdup
[call site]
04766
kh_get_vdict
[function]
[call site]
04767
strcmp
[call site]
04768
kh_put_vdict
[function]
[call site]
04769
kh_resize_vdict
[function]
[call site]
04770
bcf_hrec_find_key
[function]
[call site]
04771
strtol
[call site]
04772
kh_del_vdict
[function]
[call site]
04773
hts_log
[function]
[call site]
04774
bcf_hdr_set_idx
[function]
[call site]
04775
hts_log
[function]
[call site]
04776
__errno_location
[call site]
04777
hts_resize_array_
[function]
[call site]
04778
hts_log
[function]
[call site]
04779
__errno_location
[call site]
04780
realloc
[call site]
04781
__errno_location
[call site]
04782
__errno_location
[call site]
04783
strerror
[call site]
04784
hts_log
[function]
[call site]
04785
__errno_location
[call site]
04786
abort
[call site]
04787
abort
[call site]
04788
kh_del_vdict
[function]
[call site]
04789
hrec_add_idx
[function]
[call site]
04790
hts_realloc_p
[function]
[call site]
04791
hts_realloc_p
[function]
[call site]
04792
strdup
[call site]
04793
kputw
[function]
[call site]
04794
bcf_hdr_register_hrec_info
[function]
[call site]
04795
strcmp
[call site]
04796
strcmp
[call site]
04797
strtol
[call site]
04798
hts_log
[function]
[call site]
04799
strcmp
[call site]
04800
strcmp
[call site]
04801
strcmp
[call site]
04802
strcmp
[call site]
04803
strcmp
[call site]
04804
strcmp
[call site]
04805
hts_log
[function]
[call site]
04806
strcmp
[call site]
04807
strcmp
[call site]
04808
strcmp
[call site]
04809
strcmp
[call site]
04810
strcmp
[call site]
04811
strcmp
[call site]
04812
strcmp
[call site]
04813
strcmp
[call site]
04814
strcmp
[call site]
04815
strcmp
[call site]
04816
__isoc99_sscanf
[call site]
04817
hts_log
[function]
[call site]
04818
strdup
[call site]
04819
kh_get_vdict
[function]
[call site]
04820
strcmp
[call site]
04821
hrec_add_idx
[function]
[call site]
04822
hrec_add_idx
[function]
[call site]
04823
kh_put_vdict
[function]
[call site]
04824
bcf_hdr_set_idx
[function]
[call site]
04825
kh_del_vdict
[function]
[call site]
04826
hrec_add_idx
[function]
[call site]
04827
bcf_hrec_destroy
[function]
[call site]
04828
ksprintf
[function]
[call site]
04829
kh_get_hdict
[function]
[call site]
04830
bcf_hrec_destroy
[function]
[call site]
04831
bcf_get_version
[function]
[call site]
04832
get_hdr_aux
[function]
[call site]
04833
bcf_hdr_get_version
[function]
[call site]
04834
bcf_hdr_get_hrec
[function]
[call site]
04835
ksprintf
[function]
[call site]
04836
get_hdr_aux
[function]
[call site]
04837
kh_get_hdict
[function]
[call site]
04838
strcmp
[call site]
04839
ksprintf
[function]
[call site]
04840
get_hdr_aux
[function]
[call site]
04841
kh_get_hdict
[function]
[call site]
04842
strcmp
[call site]
04843
bcf_hrec_find_key
[function]
[call site]
04844
strcmp
[call site]
04845
kh_get_vdict
[function]
[call site]
04846
hts_log
[function]
[call site]
04847
strstr
[call site]
04848
strchr
[call site]
04849
strtol
[call site]
04850
__errno_location
[call site]
04851
strtol
[call site]
04852
__errno_location
[call site]
04853
hts_log
[function]
[call site]
04854
bcf_hrec_find_key
[function]
[call site]
04855
ksprintf
[function]
[call site]
04856
kh_get_hdict
[function]
[call site]
04857
bcf_hrec_destroy
[function]
[call site]
04858
hts_realloc_p
[function]
[call site]
04859
bcf_hdr_unregister_hrec
[function]
[call site]
04860
bcf_hrec_find_key
[function]
[call site]
04861
kh_get_vdict
[function]
[call site]
04862
kh_put_hdict
[function]
[call site]
04863
kh_resize_hdict
[function]
[call site]
04864
bcf_hdr_append
[function]
[call site]
04865
kh_destroy_vdict
[function]
[call site]
04866
hts_getline
[function]
[call site]
04867
hts_log
[function]
[call site]
04868
hopen
[function]
[call site]
04869
hts_log
[function]
[call site]
04870
khgetline
[function]
[call site]
04871
strchr
[call site]
04872
kputs
[function]
[call site]
04873
kputsn
[function]
[call site]
04874
kputs
[function]
[call site]
04875
atol
[call site]
04876
kputl
[function]
[call site]
04877
kputll
[function]
[call site]
04878
kputsn
[function]
[call site]
04879
hclose
[function]
[call site]
04880
hts_log
[function]
[call site]
04881
kputsn
[function]
[call site]
04882
kputc
[function]
[call site]
04883
hts_log
[function]
[call site]
04884
bcf_hdr_parse
[function]
[call site]
04885
bcf_hdr_parse_line
[function]
[call site]
04886
strcasecmp
[call site]
04887
hts_log
[function]
[call site]
04888
bcf_hdr_add_hrec
[function]
[call site]
04889
bcf_hrec_destroy
[function]
[call site]
04890
bcf_hdr_parse_line
[function]
[call site]
04891
bcf_hdr_add_hrec
[function]
[call site]
04892
bcf_hrec_destroy
[function]
[call site]
04893
bcf_hdr_parse_line
[function]
[call site]
04894
bcf_hdr_add_hrec
[function]
[call site]
04895
bcf_hrec_destroy
[function]
[call site]
04896
__assert_fail
[call site]
04897
__errno_location
[call site]
04898
strerror
[call site]
04899
hts_log
[function]
[call site]
04900
strncmp
[call site]
04901
strchr
[call site]
04902
hts_strprint
[function]
[call site]
04903
hts_log
[function]
[call site]
04904
bcf_hdr_parse_sample_line
[function]
[call site]
04905
strlen
[call site]
04906
strncmp
[call site]
04907
hts_log
[function]
[call site]
04908
strlen
[call site]
04909
strncmp
[call site]
04910
hts_log
[function]
[call site]
04911
bcf_hdr_add_sample_len
[function]
[call site]
04912
isspace_c
[function]
[call site]
04913
hts_log
[function]
[call site]
04914
hts_realloc_ps
[function]
[call site]
04915
kh_put_vdict
[function]
[call site]
04916
hts_log
[function]
[call site]
04917
bcf_hdr_sync
[function]
[call site]
04918
hts_realloc_p
[function]
[call site]
04919
get_hdr_aux
[function]
[call site]
04920
bcf_hdr_check_sanity
[function]
[call site]
04921
bcf_get_version
[function]
[call site]
04922
bcf_hdr_id2int
[function]
[call site]
04923
kh_get_vdict
[function]
[call site]
04924
atoi
[call site]
04925
hts_log
[function]
[call site]
04926
hts_log
[function]
[call site]
04927
bcf_hdr_id2int
[function]
[call site]
04928
atoi
[call site]
04929
hts_log
[function]
[call site]
04930
hts_log
[function]
[call site]
04931
tbx_index_load3
[function]
[call site]
04932
index_load
[function]
[call site]
04933
calloc
[call site]
04934
hts_idx_load3
[function]
[call site]
04935
idx_find_and_load
[function]
[call site]
04936
strstr
[call site]
04937
strdup
[call site]
04938
__errno_location
[call site]
04939
strerror
[call site]
04940
hts_log
[function]
[call site]
04941
hts_idx_load3
[function]
[call site]
04942
hisremote
[function]
[call site]
04943
stat
[call site]
04944
hts_log
[function]
[call site]
04945
idx_test_and_fetch
[function]
[call site]
04946
hisremote
[function]
[call site]
04947
strncmp
[call site]
04948
strcspn
[call site]
04949
kputsn
[function]
[call site]
04950
access
[call site]
04951
hopen
[function]
[call site]
04952
hts_log
[function]
[call site]
04953
hts_detect_format2
[function]
[call site]
04954
hts_log
[function]
[call site]
04955
hts_log
[function]
[call site]
04956
hts_open_tmpfile
[function]
[call site]
04957
hts_log
[function]
[call site]
04958
hts_log
[function]
[call site]
04959
calloc
[call site]
04960
__errno_location
[call site]
04961
strerror
[call site]
04962
hts_log
[function]
[call site]
04963
hread
[function]
[call site]
04964
hwrite
[function]
[call site]
04965
__errno_location
[call site]
04966
strerror
[call site]
04967
hts_log
[function]
[call site]
04968
hts_log
[function]
[call site]
04969
hclose
[function]
[call site]
04970
__errno_location
[call site]
04971
strerror
[call site]
04972
hts_log
[function]
[call site]
04973
rename
[call site]
04974
__errno_location
[call site]
04975
strerror
[call site]
04976
hts_log
[function]
[call site]
04977
ks_clear
[function]
[call site]
04978
hclose
[function]
[call site]
04979
hts_log
[function]
[call site]
04980
hopen
[function]
[call site]
04981
hclose_abruptly
[function]
[call site]
04982
strlen
[call site]
04983
__errno_location
[call site]
04984
hclose_abruptly
[function]
[call site]
04985
hclose_abruptly
[function]
[call site]
04986
unlink
[call site]
04987
__errno_location
[call site]
04988
strdup
[call site]
04989
idx_read
[function]
[call site]
04990
bgzf_open
[function]
[call site]
04991
ed_is_big
[function]
[call site]
04992
bgzf_read
[function]
[call site]
04993
memcmp
[call site]
04994
bgzf_read
[function]
[call site]
04995
ed_swap_4p
[function]
[call site]
04996
hts_malloc_ps
[function]
[call site]
04997
bgzf_read
[function]
[call site]
04998
bgzf_read
[function]
[call site]
04999
ed_swap_4p
[function]
[call site]
05000
hts_idx_init
[function]
[call site]
05001
idx_read_core
[function]
[call site]
05005
ed_is_big
[function]
[call site]
05006
kh_init_bin
[function]
[call site]
05007
bgzf_read
[function]
[call site]
05008
ed_swap_4p
[function]
[call site]
05009
bgzf_read
[function]
[call site]
05010
ed_swap_4p
[function]
[call site]
05011
kh_put_bin
[function]
[call site]
05012
bgzf_read
[function]
[call site]
05013
ed_swap_8p
[function]
[call site]
05014
bgzf_read
[function]
[call site]
05015
ed_swap_4p
[function]
[call site]
05016
hts_malloc_p
[function]
[call site]
05017
bgzf_read
[function]
[call site]
05018
swap_bins
[function]
[call site]
05019
ed_swap_8p
[function]
[call site]
05020
ed_swap_8p
[function]
[call site]
05021
bgzf_read
[function]
[call site]
05022
ed_swap_4p
[function]
[call site]
05023
hts_malloc_p
[function]
[call site]
05024
bgzf_read
[function]
[call site]
05025
ed_swap_8p
[function]
[call site]
05026
update_loff
[function]
[call site]
05027
hts_bin_bot
[function]
[call site]
05028
hts_bin_level
[function]
[call site]
05029
bgzf_read
[function]
[call site]
05030
ed_swap_8p
[function]
[call site]
05031
memcmp
[call site]
05032
bgzf_read
[function]
[call site]
05033
le_to_u32
[function]
[call site]
05034
hts_idx_init
[function]
[call site]
05035
le_to_u32
[function]
[call site]
05036
hts_malloc_ps
[function]
[call site]
05037
bgzf_read
[function]
[call site]
05038
idx_read_core
[function]
[call site]
05039
memcmp
[call site]
05040
bgzf_read
[function]
[call site]
05041
ed_swap_4p
[function]
[call site]
05042
hts_idx_init
[function]
[call site]
05043
idx_read_core
[function]
[call site]
05044
__errno_location
[call site]
05045
bgzf_close
[function]
[call site]
05046
bgzf_close
[function]
[call site]
05047
hts_idx_destroy
[function]
[call site]
05048
__errno_location
[call site]
05049
strerror
[call site]
05050
hts_log
[function]
[call site]
05051
hts_idx_check_local
[function]
[call site]
05052
hisremote
[function]
[call site]
05053
strlen
[call site]
05054
strncmp
[call site]
05055
strncmp
[call site]
05056
hts_log
[function]
[call site]
05057
strlen
[call site]
05058
calloc
[call site]
05059
strcpy
[call site]
05060
stat
[call site]
05061
strcpy
[call site]
05062
stat
[call site]
05063
strcpy
[call site]
05064
stat
[call site]
05065
strcpy
[call site]
05066
stat
[call site]
05067
strcpy
[call site]
05068
stat
[call site]
05069
strcpy
[call site]
05070
stat
[call site]
05071
strcpy
[call site]
05072
stat
[call site]
05073
strcpy
[call site]
05074
stat
[call site]
05075
strcpy
[call site]
05076
strcmp
[call site]
05077
strcmp
[call site]
05078
strcpy
[call site]
05079
stat
[call site]
05080
strcpy
[call site]
05081
stat
[call site]
05082
hisremote
[function]
[call site]
05083
idx_filename
[function]
[call site]
05084
haddextension
[function]
[call site]
05085
find_scheme_handler
[function]
[call site]
05086
strncmp
[call site]
05087
strcspn
[call site]
05088
strchr
[call site]
05089
strip_extension
[function]
[call site]
05090
kputsn
[function]
[call site]
05091
kputs
[function]
[call site]
05092
kputs
[function]
[call site]
05093
idx_test_and_fetch
[function]
[call site]
05094
haddextension
[function]
[call site]
05095
idx_test_and_fetch
[function]
[call site]
05096
idx_filename
[function]
[call site]
05097
idx_filename
[function]
[call site]
05098
idx_filename
[function]
[call site]
05099
idx_filename
[function]
[call site]
05100
idx_filename
[function]
[call site]
05101
hts_log
[function]
[call site]
05102
hts_idx_load3
[function]
[call site]
05103
idx_read
[function]
[call site]
05104
hts_idx_get_meta
[function]
[call site]
05105
le_to_i32
[function]
[call site]
05106
le_to_i32
[function]
[call site]
05107
le_to_i32
[function]
[call site]
05108
le_to_i32
[function]
[call site]
05109
le_to_i32
[function]
[call site]
05110
le_to_i32
[function]
[call site]
05111
le_to_u32
[function]
[call site]
05112
get_tid
[function]
[call site]
05113
kh_init_s2i
[function]
[call site]
05114
kh_put_s2i
[function]
[call site]
05115
strdup
[call site]
05116
kh_del_s2i
[function]
[call site]
05117
kh_get_s2i
[function]
[call site]
05118
__errno_location
[call site]
05119
strerror
[call site]
05120
hts_log
[function]
[call site]
05121
strlen
[call site]
05122
hts_log
[function]
[call site]
05123
tbx_destroy
[function]
[call site]
05124
hts_idx_destroy
[function]
[call site]
05125
kh_destroy_s2i
[function]
[call site]
05126
tbx_seqnames
[function]
[call site]
05127
calloc
[call site]
05128
calloc
[call site]
05129
__assert_fail
[call site]
05130
__assert_fail
[call site]
05131
bcf_hdr_get_hrec
[function]
[call site]
05132
add_missing_contig_hrec
[function]
[call site]
05133
calloc
[call site]
05134
strdup
[call site]
05135
bcf_hrec_add_key
[function]
[call site]
05136
strlen
[call site]
05137
bcf_hrec_set_val
[function]
[call site]
05138
bcf_hdr_add_hrec
[function]
[call site]
05139
__errno_location
[call site]
05140
__errno_location
[call site]
05141
strerror
[call site]
05142
hts_log
[function]
[call site]
05143
bcf_hrec_destroy
[function]
[call site]
05144
__errno_location
[call site]
05145
bcf_hdr_sync
[function]
[call site]
05146
tbx_destroy
[function]
[call site]
05147
tbx_destroy
[function]
[call site]
05148
bcf_hdr_destroy
[function]
[call site]
05149
get_hdr_aux
[function]
[call site]
05150
kh_destroy_hdict
[function]
[call site]
05151
kh_destroy_vdict
[function]
[call site]
05152
bcf_hrec_destroy
[function]
[call site]
05153
hts_log
[function]
[call site]
05154
__assert_fail
[call site]
05155
bcf_hdr_init
[function]
[call site]
05156
bgzf_read
[function]
[call site]
05157
hts_log
[function]
[call site]
05158
bcf_hdr_destroy
[function]
[call site]
05159
strncmp
[call site]
05160
strncmp
[call site]
05161
hts_log
[function]
[call site]
05162
hts_log
[function]
[call site]
05163
bcf_hdr_destroy
[function]
[call site]
05164
bgzf_read
[function]
[call site]
05165
__errno_location
[call site]
05166
__errno_location
[call site]
05167
bgzf_read
[function]
[call site]
05168
bcf_hdr_parse
[function]
[call site]
05169
bcf_hdr_incr_ref
[function]
[call site]
05170
get_hdr_aux
[function]
[call site]
05171
bgzf_set_private_data
[function]
[call site]
05172
__assert_fail
[call site]
05173
hdr_bgzf_private_data_cleanup
[function]
[call site]
05174
bcf_hdr_decr_ref
[function]
[call site]
05175
get_hdr_aux
[function]
[call site]
05176
bcf_hdr_destroy
[function]
[call site]
05177
hts_log
[function]
[call site]
05178
bcf_hdr_destroy
[function]
[call site]
05179
hts_close_or_abort
[function]
[call site]
05180
hts_close
[function]
[call site]
05181
bcf_hdr_write
[function]
[call site]
05182
__errno_location
[call site]
05183
bcf_hdr_sync
[function]
[call site]
05184
vcf_hdr_write
[function]
[call site]
05185
bcf_hdr_format
[function]
[call site]
05186
_bcf_hrec_format
[function]
[call site]
05187
ksprintf
[function]
[call site]
05188
strcmp
[call site]
05189
kputc
[function]
[call site]
05190
ksprintf
[function]
[call site]
05191
ksprintf
[function]
[call site]
05192
ksprintf
[function]
[call site]
05193
ksprintf
[function]
[call site]
05194
ksprintf
[function]
[call site]
05195
ksprintf
[function]
[call site]
05196
ksprintf
[function]
[call site]
05197
bgzf_write
[function]
[call site]
05198
bgzf_flush
[function]
[call site]
05199
hwrite
[function]
[call site]
05200
bcf_hdr_format
[function]
[call site]
05201
kputc
[function]
[call site]
05202
bgzf_write
[function]
[call site]
05203
u32_to_le
[function]
[call site]
05204
bgzf_write
[function]
[call site]
05205
bgzf_write
[function]
[call site]
05206
bgzf_flush
[function]
[call site]
05207
bcf_hdr_incr_ref
[function]
[call site]
05208
bgzf_set_private_data
[function]
[call site]
05209
hdr_bgzf_private_data_cleanup
[function]
[call site]
05210
bcf_init
[function]
[call site]
05211
calloc
[call site]
05212
bcf_read
[function]
[call site]
05213
vcf_read
[function]
[call site]
05214
hts_getline
[function]
[call site]
05215
vcf_parse
[function]
[call site]
05216
ks_resize
[function]
[call site]
05217
bcf_clear
[function]
[call site]
05218
bcf_float_set
[function]
[call site]
05219
kstrtok
[function]
[call site]
05220
kh_get_vdict
[function]
[call site]
05221
hts_log
[function]
[call site]
05222
hts_log
[function]
[call site]
05223
fix_chromosome
[function]
[call site]
05224
ksprintf
[function]
[call site]
05225
bcf_hdr_parse_line
[function]
[call site]
05226
bcf_hdr_add_hrec
[function]
[call site]
05227
bcf_hrec_destroy
[function]
[call site]
05228
bcf_hdr_sync
[function]
[call site]
05229
kh_get_vdict
[function]
[call site]
05230
hts_log
[function]
[call site]
05231
kstrtok
[function]
[call site]
05232
hts_str2uint
[function]
[call site]
05233
hts_log
[function]
[call site]
05234
hts_log
[function]
[call site]
05235
kstrtok
[function]
[call site]
05236
memcmp
[call site]
05237
bcf_enc_vchar
[function]
[call site]
05238
bcf_enc_size
[function]
[call site]
05239
ks_resize
[function]
[call site]
05240
ks_resize
[function]
[call site]
05241
i16_to_le
[function]
[call site]
05242
i32_to_le
[function]
[call site]
05243
kputsn
[function]
[call site]
05244
bcf_enc_size
[function]
[call site]
05245
kstrtok
[function]
[call site]
05246
bcf_enc_vchar
[function]
[call site]
05247
kstrtok
[function]
[call site]
05248
memcmp
[call site]
05249
bcf_seqname_safe
[function]
[call site]
05250
bcf_seqname
[function]
[call site]
05251
bcf_hdr_id2name
[function]
[call site]
05252
hts_log
[function]
[call site]
05253
bcf_enc_vchar
[function]
[call site]
05254
kstrtok
[function]
[call site]
05255
memcmp
[call site]
05256
atof
[call site]
05257
bcf_float_set
[function]
[call site]
05258
kstrtok
[function]
[call site]
05259
memcmp
[call site]
05260
vcf_parse_filter
[function]
[call site]
05261
hts_malloc_p
[function]
[call site]
05262
bcf_seqname_safe
[function]
[call site]
05263
hts_log
[function]
[call site]
05264
kstrtok
[function]
[call site]
05265
kh_get_vdict
[function]
[call site]
05266
bcf_seqname_safe
[function]
[call site]
05267
hts_log
[function]
[call site]
05268
hts_log
[function]
[call site]
05269
ksprintf
[function]
[call site]
05270
bcf_hdr_parse_line
[function]
[call site]
05271
bcf_hdr_add_hrec
[function]
[call site]
05272
bcf_hrec_destroy
[function]
[call site]
05273
bcf_hdr_sync
[function]
[call site]
05274
kh_get_vdict
[function]
[call site]
05275
bcf_seqname_safe
[function]
[call site]
05276
hts_log
[function]
[call site]
05277
bcf_enc_vint
[function]
[call site]
05278
bcf_enc_size
[function]
[call site]
05279
bcf_enc_int1
[function]
[call site]
05280
ks_resize
[function]
[call site]
05281
i16_to_le
[function]
[call site]
05282
i32_to_le
[function]
[call site]
05283
bcf_enc_size
[function]
[call site]
05284
ks_resize
[function]
[call site]
05285
bcf_enc_size
[function]
[call site]
05286
ks_resize
[function]
[call site]
05287
i16_to_le
[function]
[call site]
05288
bcf_enc_size
[function]
[call site]
05289
ks_resize
[function]
[call site]
05290
i32_to_le
[function]
[call site]
05291
bcf_enc_vint
[function]
[call site]
05292
kstrtok
[function]
[call site]
05293
memcmp
[call site]
05294
vcf_parse_info
[function]
[call site]
05295
bcf_seqname_safe
[function]
[call site]
05296
hts_log
[function]
[call site]
05297
kh_get_vdict
[function]
[call site]
05298
bcf_seqname_safe
[function]
[call site]
05299
hts_log
[function]
[call site]
05300
hts_log
[function]
[call site]
05301
ksprintf
[function]
[call site]
05302
bcf_hdr_parse_line
[function]
[call site]
05303
bcf_hdr_add_hrec
[function]
[call site]
05304
bcf_hrec_destroy
[function]
[call site]
05305
bcf_hdr_sync
[function]
[call site]
05306
kh_get_vdict
[function]
[call site]
05307
bcf_seqname_safe
[function]
[call site]
05308
hts_log
[function]
[call site]
05309
bcf_enc_int1
[function]
[call site]
05310
bcf_enc_size
[function]
[call site]
05311
bcf_enc_vchar
[function]
[call site]
05312
hts_realloc_p
[function]
[call site]
05313
bcf_seqname_safe
[function]
[call site]
05314
hts_log
[function]
[call site]
05315
hts_str2int
[function]
[call site]
05316
bcf_seqname_safe
[function]
[call site]
05317
hts_log
[function]
[call site]
05318
bcf_enc_int1
[function]
[call site]
05319
bcf_enc_vint
[function]
[call site]
05320
memcmp
[call site]
05321
bcf_seqname_safe
[function]
[call site]
05322
hts_log
[function]
[call site]
05323
hts_str2dbl
[function]
[call site]
05324
bcf_float_set
[function]
[call site]
05325
bcf_enc_vfloat
[function]
[call site]
05326
__assert_fail
[call site]
05327
bcf_enc_size
[function]
[call site]
05328
serialize_float_array
[function]
[call site]
05329
ks_resize
[function]
[call site]
05330
float_to_le
[function]
[call site]
05331
kstrtok
[function]
[call site]
05332
vcf_parse_format
[function]
[call site]
05333
vcf_parse_format_empty1
[function]
[call site]
05334
bcf_seqname_safe
[function]
[call site]
05335
hts_log
[function]
[call site]
05336
vcf_parse_format_dict2
[function]
[call site]
05337
kstrtok
[function]
[call site]
05338
bcf_seqname_safe
[function]
[call site]
05339
hts_log
[function]
[call site]
05340
kh_get_vdict
[function]
[call site]
05341
bcf_seqname_safe
[function]
[call site]
05342
hts_log
[function]
[call site]
05343
bcf_seqname_safe
[function]
[call site]
05344
hts_log
[function]
[call site]
05345
hts_log
[function]
[call site]
05346
ksprintf
[function]
[call site]
05347
bcf_hdr_parse_line
[function]
[call site]
05348
bcf_hdr_add_hrec
[function]
[call site]
05349
bcf_hrec_destroy
[function]
[call site]
05350
bcf_hdr_sync
[function]
[call site]
05351
kh_get_vdict
[function]
[call site]
05352
bcf_seqname_safe
[function]
[call site]
05353
hts_log
[function]
[call site]
05354
vcf_parse_format_max3
[function]
[call site]
05355
hts_log
[function]
[call site]
05356
vcf_parse_format_alloc4
[function]
[call site]
05357
bcf_seqname_safe
[function]
[call site]
05358
hts_log
[function]
[call site]
05359
align_mem
[function]
[call site]
05360
kputsn
[function]
[call site]
05361
bcf_seqname_safe
[function]
[call site]
05362
bcf_seqname_safe
[function]
[call site]
05363
hts_log
[function]
[call site]
05364
ks_resize
[function]
[call site]
05365
bcf_seqname_safe
[function]
[call site]
05366
hts_log
[function]
[call site]
05367
bcf_seqname_safe
[function]
[call site]
05368
hts_log
[function]
[call site]
05369
vcf_parse_format_fill5
[function]
[call site]
05370
bcf_get_version
[function]
[call site]
05371
bcf_seqname_safe
[function]
[call site]
05372
hts_log
[function]
[call site]
05373
hts_str2uint
[function]
[call site]
05374
bcf_seqname_safe
[function]
[call site]
05375
hts_log
[function]
[call site]
05376
bcf_seqname_safe
[function]
[call site]
05377
hts_log
[function]
[call site]
05378
hts_str2int
[function]
[call site]
05379
bcf_seqname_safe
[function]
[call site]
05380
hts_log
[function]
[call site]
05381
isdigit_c
[function]
[call site]
05382
bcf_float_set
[function]
[call site]
05383
hts_str2dbl
[function]
[call site]
05384
bcf_seqname
[function]
[call site]
05385
hts_log
[function]
[call site]
05386
bcf_float_set
[function]
[call site]
05387
bcf_float_set
[function]
[call site]
05388
bcf_seqname_safe
[function]
[call site]
05389
hts_log
[function]
[call site]
05390
hts_strprint
[function]
[call site]
05391
bcf_seqname_safe
[function]
[call site]
05392
hts_log
[function]
[call site]
05393
bcf_float_set
[function]
[call site]
05394
bcf_float_set
[function]
[call site]
05395
vcf_parse_format_gt6
[function]
[call site]
05396
bcf_enc_int1
[function]
[call site]
05397
bcf_enc_size
[function]
[call site]
05398
kputsn
[function]
[call site]
05399
bcf_enc_vint
[function]
[call site]
05400
bcf_enc_size
[function]
[call site]
05401
serialize_float_array
[function]
[call site]
05402
bcf_seqname_safe
[function]
[call site]
05403
hts_log
[function]
[call site]
05404
vcf_parse_format_check7
[function]
[call site]
05405
bcf_seqname_safe
[function]
[call site]
05406
hts_log
[function]
[call site]
05407
bcf_seqname_safe
[function]
[call site]
05408
hts_log
[function]
[call site]
05409
get_rlen
[function]
[call site]
05410
bcf_hdr_id2int
[function]
[call site]
05411
svlen_on_ref_for_vcf_alt
[function]
[call site]
05412
strlen
[call site]
05413
memcmp
[call site]
05414
memcmp
[call site]
05415
memcmp
[call site]
05416
memcmp
[call site]
05417
strcmp
[call site]
05418
strcmp
[call site]
05419
strlen
[call site]
05420
bcf_dec_size
[function]
[call site]
05421
bcf_dec_typed_int1
[function]
[call site]
05422
bcf_dec_int1
[function]
[call site]
05423
le_to_i8
[function]
[call site]
05424
le_to_i16
[function]
[call site]
05425
le_to_i32
[function]
[call site]
05426
le_to_i64
[function]
[call site]
05427
le_to_u64
[function]
[call site]
05428
bcf_dec_size
[function]
[call site]
05429
svlen_on_ref_for_vcf_alt
[function]
[call site]
05430
strncmp
[call site]
05431
strncmp
[call site]
05432
bcf_dec_size
[function]
[call site]
05433
bcf_hdr_id2int
[function]
[call site]
05434
bcf_get_info
[function]
[call site]
05435
bcf_hdr_id2int
[function]
[call site]
05436
bcf_get_info_id
[function]
[call site]
05437
bcf_unpack
[function]
[call site]
05438
bcf_fmt_sized_array
[function]
[call site]
05439
bcf_dec_size
[function]
[call site]
05440
bcf_fmt_array
[function]
[call site]
05441
kputc_
[function]
[call site]
05442
memchr
[call site]
05443
kputsn
[function]
[call site]
05444
kputc
[function]
[call site]
05445
le_to_i8
[function]
[call site]
05446
kputc_
[function]
[call site]
05447
kputc
[function]
[call site]
05448
kputw
[function]
[call site]
05449
le_to_i16
[function]
[call site]
05450
kputc_
[function]
[call site]
05451
kputc
[function]
[call site]
05452
kputw
[function]
[call site]
05453
le_to_i32
[function]
[call site]
05454
kputc_
[function]
[call site]
05455
kputc
[function]
[call site]
05456
kputw
[function]
[call site]
05457
le_to_u32
[function]
[call site]
05458
kputc_
[function]
[call site]
05459
kputc
[function]
[call site]
05460
le_to_float
[function]
[call site]
05461
kputd
[function]
[call site]
05462
hts_log
[function]
[call site]
05463
exit
[call site]
05464
kputc_
[function]
[call site]
05465
hts_realloc_or_die
[function]
[call site]
05466
bcf_fmt_sized_array
[function]
[call site]
05467
kputc_
[function]
[call site]
05468
bcf_dec_size
[function]
[call site]
05469
hts_realloc_or_die
[function]
[call site]
05470
bcf_dec_int1
[function]
[call site]
05471
hts_realloc_or_die
[function]
[call site]
05472
bcf_unpack_info_core1
[function]
[call site]
05473
bcf_dec_typed_int1
[function]
[call site]
05474
bcf_dec_size
[function]
[call site]
05475
le_to_i16
[function]
[call site]
05476
le_to_i32
[function]
[call site]
05477
le_to_float
[function]
[call site]
05478
le_to_i64
[function]
[call site]
05479
hts_realloc_or_die
[function]
[call site]
05480
bcf_unpack_fmt_core1
[function]
[call site]
05481
bcf_dec_typed_int1
[function]
[call site]
05482
bcf_dec_size
[function]
[call site]
05483
bcf_get_info
[function]
[call site]
05484
bcf_dec_typed_int1
[function]
[call site]
05485
bcf_unpack_info_core1
[function]
[call site]
05486
bcf_unpack_info_core1
[function]
[call site]
05487
bcf_dec_size
[function]
[call site]
05488
bcf_hdr_id2int
[function]
[call site]
05489
bcf_get_fmt
[function]
[call site]
05490
bcf_hdr_id2int
[function]
[call site]
05491
bcf_get_fmt_id
[function]
[call site]
05492
bcf_unpack
[function]
[call site]
05493
bcf_dec_typed_int1
[function]
[call site]
05494
bcf_unpack_fmt_core1
[function]
[call site]
05495
bcf_dec_size
[function]
[call site]
05496
le_to_i8
[function]
[call site]
05497
le_to_i16
[function]
[call site]
05498
le_to_i32
[function]
[call site]
05499
le_to_i64
[function]
[call site]
05500
le_to_i8
[function]
[call site]
05501
le_to_i16
[function]
[call site]
05502
le_to_i32
[function]
[call site]
05503
le_to_i64
[function]
[call site]
05504
bgzf_get_private_data
[function]
[call site]
05505
__assert_fail
[call site]
05506
bcf_read1_core
[function]
[call site]
05507
bgzf_read
[function]
[call site]
05508
bcf_clear
[function]
[call site]
05509
le_to_u32
[function]
[call site]
05510
le_to_u32
[function]
[call site]
05511
ks_resize
[function]
[call site]
05512
ks_resize
[function]
[call site]
05513
le_to_i32
[function]
[call site]
05514
le_to_u32
[function]
[call site]
05515
le_to_i32
[function]
[call site]
05516
le_to_float
[function]
[call site]
05517
le_to_u16
[function]
[call site]
05518
le_to_u16
[function]
[call site]
05519
le_to_u32
[function]
[call site]
05520
bgzf_read
[function]
[call site]
05521
bgzf_read
[function]
[call site]
05522
bcf_record_check
[function]
[call site]
05523
bcf_get_version
[function]
[call site]
05524
bcf_hdr_id2int
[function]
[call site]
05525
bcf_dec_size_safe
[function]
[call site]
05526
bcf_dec_typed_int1_safe
[function]
[call site]
05527
le_to_i16
[function]
[call site]
05528
le_to_i32
[function]
[call site]
05529
bcf_seqname_safe
[function]
[call site]
05530
get_type_name
[function]
[call site]
05531
hts_log
[function]
[call site]
05532
bcf_seqname_safe
[function]
[call site]
05533
hts_log
[function]
[call site]
05534
bcf_dec_size_safe
[function]
[call site]
05535
bcf_seqname_safe
[function]
[call site]
05536
get_type_name
[function]
[call site]
05537
hts_log
[function]
[call site]
05538
bcf_dec_size_safe
[function]
[call site]
05539
bcf_seqname_safe
[function]
[call site]
05540
get_type_name
[function]
[call site]
05541
hts_log
[function]
[call site]
05542
bcf_dec_int1
[function]
[call site]
05543
bcf_seqname_safe
[function]
[call site]
05544
hts_log
[function]
[call site]
05545
bcf_dec_typed_int1_safe
[function]
[call site]
05546
bcf_seqname_safe
[function]
[call site]
05547
hts_log
[function]
[call site]
05548
bcf_dec_size_safe
[function]
[call site]
05549
bcf_seqname_safe
[function]
[call site]
05550
get_type_name
[function]
[call site]
05551
hts_log
[function]
[call site]
05552
bcf_dec_typed_int1_safe
[function]
[call site]
05553
bcf_record_check_err
[function]
[call site]
05554
bcf_seqname_safe
[function]
[call site]
05555
hts_log
[function]
[call site]
05556
bcf_dec_size_safe
[function]
[call site]
05557
bcf_record_check_err
[function]
[call site]
05558
updatephasing
[function]
[call site]
05559
bcf_seqname_safe
[function]
[call site]
05560
hts_log
[function]
[call site]
05561
get_rlen
[function]
[call site]
05562
bcf_seqname_safe
[function]
[call site]
05563
hts_log
[function]
[call site]
05564
bcf_seqname_safe
[function]
[call site]
05565
hts_log
[function]
[call site]
05566
bcf_seqname_safe
[function]
[call site]
05567
hts_log
[function]
[call site]
05568
bcf_subset_format
[function]
[call site]
05569
hts_realloc_or_die
[function]
[call site]
05570
bcf_unpack_fmt_core1
[function]
[call site]
05571
bcf_write
[function]
[call site]
05572
bcf_hdr_sync
[function]
[call site]
05573
bcf_seqname_safe
[function]
[call site]
05574
vcf_write
[function]
[call site]
05575
vcf_format
[function]
[call site]
05576
bcf_seqname
[function]
[call site]
05577
hts_log
[function]
[call site]
05578
__errno_location
[call site]
05579
bcf_unpack
[function]
[call site]
05580
get_hdr_aux
[function]
[call site]
05581
calloc
[call site]
05582
kputs
[function]
[call site]
05583
kputc_
[function]
[call site]
05584
kputll
[function]
[call site]
05585
kputc_
[function]
[call site]
05586
kputs
[function]
[call site]
05587
kputc_
[function]
[call site]
05588
kputs
[function]
[call site]
05589
kputc_
[function]
[call site]
05590
kputc_
[function]
[call site]
05591
kputc_
[function]
[call site]
05592
kputs
[function]
[call site]
05593
kputc_
[function]
[call site]
05594
kputc_
[function]
[call site]
05595
bcf_float_is_missing
[function]
[call site]
05596
kputc_
[function]
[call site]
05597
kputd
[function]
[call site]
05598
kputc_
[function]
[call site]
05599
bcf_seqname_safe
[function]
[call site]
05600
hts_log
[function]
[call site]
05601
__errno_location
[call site]
05602
kputc_
[function]
[call site]
05603
strlen
[call site]
05604
kputsn
[function]
[call site]
05605
kputc_
[function]
[call site]
05606
kputc_
[function]
[call site]
05607
bcf_dec_typed_int1
[function]
[call site]
05608
bcf_dec_size
[function]
[call site]
05609
bcf_seqname_safe
[function]
[call site]
05610
hts_log
[function]
[call site]
05611
__errno_location
[call site]
05612
strlen
[call site]
05613
ks_resize
[function]
[call site]
05614
bcf_fmt_array
[function]
[call site]
05615
bcf_float_is_missing
[function]
[call site]
05616
kputc_
[function]
[call site]
05617
kputd
[function]
[call site]
05618
kputc_
[function]
[call site]
05619
kputc_
[function]
[call site]
05620
kputw
[function]
[call site]
05621
kputc_
[function]
[call site]
05622
kputll
[function]
[call site]
05623
bcf_seqname_safe
[function]
[call site]
05624
hts_log
[function]
[call site]
05625
__errno_location
[call site]
05626
kputc_
[function]
[call site]
05627
kputc_
[function]
[call site]
05628
hts_malloc_p
[function]
[call site]
05629
bcf_dec_typed_int1
[function]
[call site]
05630
bcf_dec_size
[function]
[call site]
05631
kputc_
[function]
[call site]
05632
bcf_seqname_safe
[function]
[call site]
05633
hts_log
[function]
[call site]
05634
__errno_location
[call site]
05635
kputsn
[function]
[call site]
05636
kputsn
[function]
[call site]
05637
kputc_
[function]
[call site]
05638
kputc_
[function]
[call site]
05639
bcf_format_gt_v2
[function]
[call site]
05640
le_to_i8
[function]
[call site]
05641
kputc
[function]
[call site]
05642
kputw
[function]
[call site]
05643
le_to_i16
[function]
[call site]
05644
kputc
[function]
[call site]
05645
kputw
[function]
[call site]
05646
le_to_i32
[function]
[call site]
05647
kputc
[function]
[call site]
05648
kputw
[function]
[call site]
05649
kputc
[function]
[call site]
05650
hts_log
[function]
[call site]
05651
get_hdr_aux
[function]
[call site]
05652
kinsert_char
[function]
[call site]
05653
ks_resize
[function]
[call site]
05654
kinsert_char
[function]
[call site]
05655
kinsert_char
[function]
[call site]
05656
hts_log
[function]
[call site]
05657
__errno_location
[call site]
05658
bcf_fmt_array1
[function]
[call site]
05659
kputc_
[function]
[call site]
05660
kputc_
[function]
[call site]
05661
kputw
[function]
[call site]
05662
le_to_i16
[function]
[call site]
05663
kputc_
[function]
[call site]
05664
kputw
[function]
[call site]
05665
le_to_i32
[function]
[call site]
05666
kputc_
[function]
[call site]
05667
kputw
[function]
[call site]
05668
le_to_u32
[function]
[call site]
05669
kputc_
[function]
[call site]
05670
le_to_float
[function]
[call site]
05671
kputd
[function]
[call site]
05672
bcf_fmt_array
[function]
[call site]
05673
kputc_
[function]
[call site]
05674
bcf_fmt_array1
[function]
[call site]
05675
bcf_fmt_array
[function]
[call site]
05676
kputc_
[function]
[call site]
05677
kputsn
[function]
[call site]
05678
kputc
[function]
[call site]
05679
bgzf_flush_try
[function]
[call site]
05680
hts_idx_amend_last
[function]
[call site]
05681
bgzf_write
[function]
[call site]
05682
hwrite
[function]
[call site]
05683
bcf_seqname_safe
[function]
[call site]
05684
hts_idx_tbi_name
[function]
[call site]
05685
strlen
[call site]
05686
hts_realloc_ps
[function]
[call site]
05687
strcpy
[call site]
05688
le_to_u32
[function]
[call site]
05689
u32_to_le
[function]
[call site]
05690
bgzf_idx_push
[function]
[call site]
05691
bcf_strerror
[function]
[call site]
05692
add_desc_to_buffer
[function]
[call site]
05693
add_desc_to_buffer
[function]
[call site]
05697
bcf_seqname_safe
[function]
[call site]
05698
hts_log
[function]
[call site]
05699
bcf1_sync
[function]
[call site]
05700
bcf1_sync_id
[function]
[call site]
05701
strcmp
[call site]
05702
strlen
[call site]
05703
bcf_enc_vchar
[function]
[call site]
05704
bcf_enc_size
[function]
[call site]
05705
bcf1_sync_alleles
[function]
[call site]
05706
bcf1_sync_filter
[function]
[call site]
05710
bcf_enc_vint
[function]
[call site]
05711
bcf_enc_vint
[function]
[call site]
05712
bcf1_sync_info
[function]
[call site]
05713
kputsn_
[function]
[call site]
05714
bcf_unpack
[function]
[call site]
05715
bcf1_sync_id
[function]
[call site]
05716
kputsn_
[function]
[call site]
05717
bcf1_sync_alleles
[function]
[call site]
05718
kputsn_
[function]
[call site]
05719
strlen
[call site]
05720
bcf1_sync_filter
[function]
[call site]
05721
kputsn_
[function]
[call site]
05722
bcf_enc_vint
[function]
[call site]
05723
bcf1_sync_info
[function]
[call site]
05724
kputsn_
[function]
[call site]
05725
kputsn_
[function]
[call site]
05726
bcf_seqname_safe
[function]
[call site]
05727
hts_log
[function]
[call site]
05728
u32_to_le
[function]
[call site]
05729
u32_to_le
[function]
[call site]
05730
i32_to_le
[function]
[call site]
05731
u32_to_le
[function]
[call site]
05732
u32_to_le
[function]
[call site]
05733
float_to_le
[function]
[call site]
05734
u16_to_le
[function]
[call site]
05735
u16_to_le
[function]
[call site]
05736
u32_to_le
[function]
[call site]
05737
bgzf_write
[function]
[call site]
05738
bgzf_write
[function]
[call site]
05739
bgzf_write
[function]
[call site]
05740
bgzf_idx_push
[function]
[call site]
05741
bcf_destroy
[function]
[call site]
05742
bcf_empty
[function]
[call site]
05743
bcf_clear
[function]
[call site]
05744
bcf_hdr_destroy
[function]
[call site]
05745
hts_close_or_abort
[function]
[call site]
05746
hts_close
[function]
[call site]
05747
view_vcf
[function]
[call site]
05748