The following nodes represent call sites where fuzz blockers occur.
| Amount of callsites blocked | Calltree index | Parent function | Callsite | Largest blocked function |
|---|---|---|---|---|
| 285 | 4181 | sam_read1 | call site: 04181 | bam_sym_lookup |
| 150 | 1625 | hts_hopen | call site: 01625 | hts_process_opts |
| 113 | 4948 | idx_find_and_load | call site: 04948 | hts_idx_load3 |
| 79 | 2631 | zlib_mem_deflate | call site: 02631 | fqz_compress |
| 76 | 1547 | refs2id | call site: 01547 | hts_tpool_init |
| 67 | 2784 | rans_compress_to_4x16 | call site: 02784 | arith_compress_to |
| 67 | 3126 | cram_decode_slice | call site: 03126 | cram_get_ref |
| 67 | 3593 | cram_write_SAM_hdr | call site: 03593 | sam_hdr_remove_tag_all |
| 66 | 4084 | hts_realloc_ps | call site: 04084 | sam_parse_worker |
| 64 | 5093 | idx_find_and_load | call site: 05093 | hts_idx_load3 |
| 63 | 1874 | sam_format1_append | call site: 01874 | hts_set_opt |
| 53 | 1197 | cram_set_voption | call site: 01197 | cram_load_reference |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
hts_log
[function]
[call site]
00013
__errno_location
[call site]
00014
get_severity_tag
[function]
[call site]
00015
fprintf
[call site]
00016
vfprintf
[call site]
00017
fprintf
[call site]
00018
__errno_location
[call site]
00019
try_exe_add_scheme_handler
[function]
[call site]
00020
hts_log
[function]
[call site]
00021
kh_put_scheme_string
[function]
[call site]
00022
kh_resize_scheme_string
[function]
[call site]
00023
__errno_location
[call site]
00024
realloc
[call site]
00025
__ac_FNV1a_hash_string
[function]
[call site]
00026
strcmp
[call site]
00027
__errno_location
[call site]
00028
strerror
[call site]
00029
hts_log
[function]
[call site]
00030
priority
[function]
[call site]
00031
hfile_add_scheme_handler
[function]
[call site]
00032
hfile_add_scheme_handler
[function]
[call site]
00033
init_add_plugin
[function]
[call site]
00034
hts_log
[function]
[call site]
00035
hts_log
[function]
[call site]
00036
hts_log
[function]
[call site]
00037
hfile_plugin_init_mem
[function]
[call site]
00038
hfile_add_scheme_handler
[function]
[call site]
00039
init_add_plugin
[function]
[call site]
00040
hfile_plugin_init_crypt4gh_needed
[function]
[call site]
00041
hfile_add_scheme_handler
[function]
[call site]
00042
init_add_plugin
[function]
[call site]
00043
hfile_plugin_init_libcurl
[function]
[call site]
00044
hts_version
[function]
[call site]
00045
curl_global_init
[call site]
00046
__errno_location
[call site]
00047
curl_share_init
[call site]
00048
curl_global_cleanup
[call site]
00049
__errno_location
[call site]
00050
curl_share_setopt
[call site]
00051
share_lock
[function]
[call site]
00052
pthread_mutex_lock
[call site]
00053
curl_share_setopt
[call site]
00054
share_unlock
[function]
[call site]
00055
pthread_mutex_unlock
[call site]
00056
curl_share_setopt
[call site]
00057
curl_share_cleanup
[call site]
00058
curl_global_cleanup
[call site]
00059
__errno_location
[call site]
00060
getenv
[call site]
00061
strdup
[call site]
00062
kh_init_auth_map
[function]
[call site]
00063
calloc
[call site]
00064
__errno_location
[call site]
00065
kh_destroy_auth_map
[function]
[call site]
00066
curl_share_cleanup
[call site]
00067
curl_global_cleanup
[call site]
00068
__errno_location
[call site]
00069
getenv
[call site]
00070
strcmp
[call site]
00071
getenv
[call site]
00072
atoi
[call site]
00073
getenv
[call site]
00074
atol
[call site]
00075
getenv
[call site]
00076
atol
[call site]
00077
getenv
[call site]
00078
atol
[call site]
00079
getenv
[call site]
00080
atol
[call site]
00081
curl_version_info
[call site]
00082
ksprintf
[function]
[call site]
00083
kvsprintf
[function]
[call site]
00084
kputd
[function]
[call site]
00085
kputsn
[function]
[call site]
00086
__errno_location
[call site]
00087
ks_resize
[function]
[call site]
00088
realloc
[call site]
00089
kputsn
[function]
[call site]
00090
kputc
[function]
[call site]
00091
ks_resize
[function]
[call site]
00092
ks_resize
[function]
[call site]
00093
snprintf
[call site]
00094
kputsn
[function]
[call site]
00095
vsnprintf
[call site]
00096
ks_resize
[function]
[call site]
00097
vsnprintf
[call site]
00098
hfile_add_scheme_handler
[function]
[call site]
00099
init_add_plugin
[function]
[call site]
00100
hfile_plugin_init_gcs
[function]
[call site]
00101
hfile_add_scheme_handler
[function]
[call site]
00102
hfile_add_scheme_handler
[function]
[call site]
00103
hfile_add_scheme_handler
[function]
[call site]
00104
init_add_plugin
[function]
[call site]
00105
hfile_plugin_init_s3
[function]
[call site]
00106
hts_version
[function]
[call site]
00107
curl_global_init
[call site]
00108
__errno_location
[call site]
00109
curl_share_init
[call site]
00110
curl_global_cleanup
[call site]
00111
__errno_location
[call site]
00112
curl_share_setopt
[call site]
00113
share_lock
[function]
[call site]
00114
pthread_mutex_lock
[call site]
00115
curl_share_setopt
[call site]
00116
share_unlock
[function]
[call site]
00117
pthread_mutex_unlock
[call site]
00118
curl_share_setopt
[call site]
00119
curl_share_cleanup
[call site]
00120
curl_global_cleanup
[call site]
00121
__errno_location
[call site]
00122
curl_version_info
[call site]
00123
ksprintf
[function]
[call site]
00124
hfile_add_scheme_handler
[function]
[call site]
00125
hfile_add_scheme_handler
[function]
[call site]
00126
hfile_add_scheme_handler
[function]
[call site]
00127
atexit
[call site]
00128
hfile_exit
[function]
[call site]
00129
hfile_shutdown
[function]
[call site]
00130
pthread_mutex_lock
[call site]
00131
kh_destroy_scheme_string
[function]
[call site]
00132
pthread_mutex_unlock
[call site]
00133
pthread_mutex_destroy
[call site]
00134
pthread_mutex_unlock
[call site]
00135
pthread_mutex_unlock
[call site]
00136
kh_get_scheme_string
[function]
[call site]
00137
strchr
[call site]
00138
strcmp
[call site]
00139
hopen_fd_stdinout
[function]
[call site]
00140
strchr
[call site]
00141
snprintf
[call site]
00142
hdopen
[function]
[call site]
00143
blksize
[function]
[call site]
00144
fstat
[call site]
00145
hfile_init
[function]
[call site]
00146
strchr
[call site]
00147
posix_memalign
[call site]
00148
strchr
[call site]
00149
hfile_destroy
[function]
[call site]
00150
__errno_location
[call site]
00151
__errno_location
[call site]
00152
strchr
[call site]
00153
strchr
[call site]
00154
hopen_fd
[function]
[call site]
00155
hfile_oflags
[function]
[call site]
00156
open
[call site]
00157
blksize
[function]
[call site]
00158
hfile_init
[function]
[call site]
00159
__errno_location
[call site]
00160
close
[call site]
00161
hfile_destroy
[function]
[call site]
00162
hts_hopen
[function]
[call site]
00163
calloc
[call site]
00164
strdup
[call site]
00165
ed_is_big
[function]
[call site]
00166
strchr
[call site]
00167
strncpy
[call site]
00168
strncpy
[call site]
00169
strchr
[call site]
00170
hts_detect_format2
[function]
[call site]
00171
hpeek
[function]
[call site]
00172
refill_buffer
[function]
[call site]
00173
__errno_location
[call site]
00174
memcmp
[call site]
00175
memcmp
[call site]
00176
decompress_peek_gz
[function]
[call site]
00177
hpeek
[function]
[call site]
00178
inflateInit2_
[call site]
00179
inflate
[call site]
00180
inflateReset
[call site]
00181
inflateEnd
[call site]
00182
memcmp
[call site]
00183
memcmp
[call site]
00184
memcmp
[call site]
00185
memcmp
[call site]
00186
decompress_peek_xz
[function]
[call site]
00187
hpeek
[function]
[call site]
00188
lzma_easy_decoder_memusage
[call site]
00189
lzma_stream_decoder
[call site]
00190
lzma_code
[call site]
00191
lzma_end
[call site]
00192
lzma_end
[call site]
00193
memcmp
[call site]
00194
hpeek
[function]
[call site]
00195
strcmp
[call site]
00196
find_file_extension
[function]
[call site]
00197
strstr
[call site]
00198
strlen
[call site]
00199
tolower_c
[function]
[call site]
00200
memcmp
[call site]
00201
memcmp
[call site]
00202
memcmp
[call site]
00203
memcmp
[call site]
00204
memcmp
[call site]
00205
memcmp
[call site]
00206
memcmp
[call site]
00207
strcmp
[call site]
00208
memcmp
[call site]
00209
parse_version
[function]
[call site]
00210
isdigit_c
[function]
[call site]
00211
__ctype_b_loc
[call site]
00212
isdigit_c
[function]
[call site]
00213
memcmp
[call site]
00214
memcmp
[call site]
00215
memcmp
[call site]
00216
memcmp
[call site]
00217
parse_version
[function]
[call site]
00218
memcmp
[call site]
00219
cmp_nonblank
[function]
[call site]
00220
isspace_c
[function]
[call site]
00221
__ctype_b_loc
[call site]
00222
memcmp
[call site]
00223
is_fastaq
[function]
[call site]
00224
is_fastaq
[function]
[call site]
00228
parse_tabbed_text
[function]
[call site]
00229
isdigit_c
[function]
[call site]
00230
strchr
[call site]
00231
isdigit_c
[function]
[call site]
00232
colmatch
[function]
[call site]
00233
colmatch
[function]
[call site]
00234
strstr
[call site]
00235
colmatch
[function]
[call site]
00236
strstr
[call site]
00237
colmatch
[function]
[call site]
00238
colmatch
[function]
[call site]
00239
is_text_only
[function]
[call site]
00240
__errno_location
[call site]
00241
hopen_htsget_redirect
[function]
[call site]
00242
hfile_init
[function]
[call site]
00243
parse_ga4gh_redirect_json
[function]
[call site]
00244
hts_json_fnext
[function]
[call site]
00245
hgetc
[function]
[call site]
00246
hgetc2
[function]
[call site]
00247
refill_buffer
[function]
[call site]
00248
fscan_string
[function]
[call site]
00249
hgetc
[function]
[call site]
00250
hgetc
[function]
[call site]
00251
kputc
[function]
[call site]
00252
kputc
[function]
[call site]
00253
kputc
[function]
[call site]
00254
kputc
[function]
[call site]
00255
kputc
[function]
[call site]
00256
kputc
[function]
[call site]
00257
hgetc
[function]
[call site]
00258
dehex
[function]
[call site]
00259
hgetc
[function]
[call site]
00260
dehex
[function]
[call site]
00261
hgetc
[function]
[call site]
00262
dehex
[function]
[call site]
00263
hgetc
[function]
[call site]
00264
dehex
[function]
[call site]
00265
encode_utf8
[function]
[call site]
00266
kputsn
[function]
[call site]
00267
kputc
[function]
[call site]
00268
kputsn
[function]
[call site]
00269
kputc
[function]
[call site]
00270
hpeek
[function]
[call site]
00271
strchr
[call site]
00272
hgetc
[function]
[call site]
00273
kputc
[function]
[call site]
00274
token_type
[function]
[call site]
00275
hts_json_fnext
[function]
[call site]
00279
strcmp
[call site]
00280
parse_ga4gh_body_json
[function]
[call site]
00281
hts_json_fnext
[function]
[call site]
00282
hts_json_fnext
[function]
[call site]
00283
strcmp
[call site]
00284
hts_json_fnext
[function]
[call site]
00285
hts_json_fnext
[function]
[call site]
00286
hts_realloc_or_die
[function]
[call site]
00287
__errno_location
[call site]
00288
realloc
[call site]
00289
__errno_location
[call site]
00290
strerror
[call site]
00291
hts_log
[function]
[call site]
00292
exit
[call site]
00293
hts_json_fnext
[function]
[call site]
00294
strcmp
[call site]
00295
hts_json_fnext
[function]
[call site]
00296
ks_release
[function]
[call site]
00297
strcmp
[call site]
00298
hts_json_fnext
[function]
[call site]
00299
hts_json_fnext
[function]
[call site]
00300
hts_json_fnext
[function]
[call site]
00301
kputs
[function]
[call site]
00302
__errno_location
[call site]
00303
strlen
[call site]
00304
kputsn
[function]
[call site]
00305
kputs
[function]
[call site]
00306
hts_realloc_or_die
[function]
[call site]
00307
ks_release
[function]
[call site]
00308
hts_json_fskip_value
[function]
[call site]
00309
skip_value
[function]
[call site]
00310
fnext
[function]
[call site]
00311
hts_json_fnext
[function]
[call site]
00312
strcmp
[call site]
00313
hts_json_fnext
[function]
[call site]
00314
hts_log
[function]
[call site]
00315
hts_json_fskip_value
[function]
[call site]
00316
hts_json_fnext
[function]
[call site]
00317
free_all_parts
[function]
[call site]
00318
free_part
[function]
[call site]
00319
hfile_destroy
[function]
[call site]
00320
__errno_location
[call site]
00321
hclose_abruptly
[function]
[call site]
00322
__errno_location
[call site]
00323
hfile_destroy
[function]
[call site]
00324
__errno_location
[call site]
00325
hts_crypt4gh_redirect
[function]
[call site]
00326
strlen
[call site]
00327
snprintf
[call site]
00328
strchr
[call site]
00329
snprintf
[call site]
00330
hopen
[function]
[call site]
00331
hts_detect_format2
[function]
[call site]
00332
strchr
[call site]
00333
strchr
[call site]
00334
strchr
[call site]
00335
strchr
[call site]
00336
strchr
[call site]
00337
strchr
[call site]
00338
strchr
[call site]
00339
strchr
[call site]
00340
abort
[call site]
00341
format_category
[function]
[call site]
00342
__errno_location
[call site]
00343
bgzf_hopen
[function]
[call site]
00344
strchr
[call site]
00345
bgzf_read_init
[function]
[call site]
00346
hpeek
[function]
[call site]
00347
calloc
[call site]
00348
hts_malloc_p
[function]
[call site]
00349
hts_prod_sat2
[function]
[call site]
00350
hts_malloc
[function]
[call site]
00351
__errno_location
[call site]
00352
memcmp
[call site]
00353
memcmp
[call site]
00354
hts_log
[function]
[call site]
00355
razf_info
[function]
[call site]
00356
strcmp
[call site]
00357
hseek
[function]
[call site]
00358
writebuffer_is_nonempty
[function]
[call site]
00359
flush_buffer
[function]
[call site]
00360
__errno_location
[call site]
00361
htell
[function]
[call site]
00362
__errno_location
[call site]
00363
__errno_location
[call site]
00364
__errno_location
[call site]
00365
hread
[function]
[call site]
00366
hread2
[function]
[call site]
00367
__errno_location
[call site]
00368
refill_buffer
[function]
[call site]
00369
ed_is_big
[function]
[call site]
00370
ed_swap_8p
[function]
[call site]
00371
ed_swap_8
[function]
[call site]
00372
hts_log
[function]
[call site]
00373
hts_log
[function]
[call site]
00374
__errno_location
[call site]
00375
kh_init_bgzf_cache
[function]
[call site]
00376
calloc
[call site]
00377
strchr
[call site]
00378
bgzf_write_init
[function]
[call site]
00379
calloc
[call site]
00380
mode2level
[function]
[call site]
00381
strchr
[call site]
00382
hts_malloc_p
[function]
[call site]
00383
strchr
[call site]
00384
calloc
[call site]
00385
deflateInit2_
[call site]
00386
bgzf_zerr
[function]
[call site]
00387
hts_log
[function]
[call site]
00391
__errno_location
[call site]
00392
strerror
[call site]
00393
hts_log
[function]
[call site]
00394
__errno_location
[call site]
00395
ed_is_big
[function]
[call site]
00396
cram_dopen
[function]
[call site]
00397
calloc
[call site]
00398
cram_read_file_def
[function]
[call site]
00399
hread
[function]
[call site]
00400
memcmp
[call site]
00401
hts_log
[function]
[call site]
00402
cram_init_tables
[function]
[call site]
00403
cram_init_varint
[function]
[call site]
00404
cram_read_SAM_hdr
[function]
[call site]
00405
int32_decode
[function]
[call site]
00406
hread
[function]
[call site]
00407
hread
[function]
[call site]
00408
cram_read_container
[function]
[call site]
00409
int32_decode
[function]
[call site]
00410
crc32
[call site]
00411
calloc
[call site]
00412
__errno_location
[call site]
00413
cram_free_container
[function]
[call site]
00414
cram_free_compression_header
[function]
[call site]
00415
kh_destroy_map
[function]
[call site]
00416
cram_free_block
[function]
[call site]
00417
kh_destroy_m_s2i
[function]
[call site]
00418
string_pool_destroy
[function]
[call site]
00419
cram_free_block
[function]
[call site]
00420
cram_free_slice
[function]
[call site]
00421
free_bam_list
[function]
[call site]
00422
bam_destroy1
[function]
[call site]
00423
bam_get_mempolicy
[function]
[call site]
00424
bam_get_mempolicy
[function]
[call site]
00425
bam_get_mempolicy
[function]
[call site]
00426
cram_free_block
[function]
[call site]
00427
cram_free_block
[function]
[call site]
00428
cram_free_block
[function]
[call site]
00429
cram_free_slice_header
[function]
[call site]
00430
cram_free_block
[function]
[call site]
00431
cram_free_block
[function]
[call site]
00432
cram_free_block
[function]
[call site]
00433
cram_free_block
[function]
[call site]
00434
cram_free_block
[function]
[call site]
00435
cram_free_block
[function]
[call site]
00436
string_pool_destroy
[function]
[call site]
00437
kh_destroy_m_s2i
[function]
[call site]
00438
kh_destroy_m_s2i
[function]
[call site]
00439
cram_free_slice
[function]
[call site]
00440
cram_stats_free
[function]
[call site]
00441
kh_destroy_m_i2i
[function]
[call site]
00442
cram_free_block
[function]
[call site]
00443
cram_free_block
[function]
[call site]
00444
kh_destroy_m_tagmap
[function]
[call site]
00445
free_bam_list
[function]
[call site]
00446
cram_free_container
[function]
[call site]
00447
hts_malloc_p
[function]
[call site]
00448
hts_prod_sat2
[function]
[call site]
00449
hts_malloc
[function]
[call site]
00450
__errno_location
[call site]
00451
cram_free_container
[function]
[call site]
00452
cram_free_container
[function]
[call site]
00453
int32_decode
[function]
[call site]
00454
cram_free_container
[function]
[call site]
00455
hts_log
[function]
[call site]
00456
cram_free_container
[function]
[call site]
00457
cram_free_container
[function]
[call site]
00458
cram_read_block
[function]
[call site]
00459
hgetc
[function]
[call site]
00460
hts_log
[function]
[call site]
00461
crc32
[call site]
00462
hgetc
[function]
[call site]
00463
crc32
[call site]
00464
hread
[function]
[call site]
00465
hread
[function]
[call site]
00466
int32_decode
[function]
[call site]
00467
cram_free_container
[function]
[call site]
00468
cram_uncompress_block
[function]
[call site]
00469
crc32
[call site]
00470
hts_log
[function]
[call site]
00471
__assert_fail
[call site]
00472
hts_log
[function]
[call site]
00473
zlib_mem_inflate
[function]
[call site]
00474
__assert_fail
[call site]
00475
__assert_fail
[call site]
00476
__assert_fail
[call site]
00477
inflateInit2_
[call site]
00478
hts_log
[function]
[call site]
00479
inflate
[call site]
00480
hts_log
[function]
[call site]
00481
inflateEnd
[call site]
00482
inflateEnd
[call site]
00483
BZ2_bzBuffToBuffDecompress
[call site]
00484
lzma_mem_inflate
[function]
[call site]
00485
lzma_easy_decoder_memusage
[call site]
00486
lzma_stream_decoder
[call site]
00487
realloc
[call site]
00488
lzma_code
[call site]
00489
hts_log
[function]
[call site]
00490
lzma_code
[call site]
00491
hts_log
[function]
[call site]
00492
realloc
[call site]
00493
lzma_end
[call site]
00494
lzma_end
[call site]
00495
rans_uncompress
[function]
[call site]
00496
rans_uncompress_O1
[function]
[call site]
00497
htscodecs_tls_calloc
[function]
[call site]
00498
htscodecs_tls_alloc
[function]
[call site]
00499
pthread_once
[call site]
00500
htscodecs_tls_init
[function]
[call site]
00501
pthread_key_create
[call site]
00502
htscodecs_tls_free_all
[function]
[call site]
00503
fprintf
[call site]
00504
strerror
[call site]
00505
fprintf
[call site]
00506
pthread_getspecific
[call site]
00507
calloc
[call site]
00508
pthread_setspecific
[call site]
00509
fprintf
[call site]
00510
calloc
[call site]
00511
RansDecSymbolInit32
[function]
[call site]
00512
__assert_fail
[call site]
00513
__assert_fail
[call site]
00514
RansDecInit
[function]
[call site]
00515
RansDecInit
[function]
[call site]
00516
RansDecInit
[function]
[call site]
00517
RansDecInit
[function]
[call site]
00518
RansDecAdvanceStep
[function]
[call site]
00519
RansDecAdvanceStep
[function]
[call site]
00520
RansDecAdvanceStep
[function]
[call site]
00521
RansDecAdvanceStep
[function]
[call site]
00522
RansDecRenorm2
[function]
[call site]
00523
RansDecRenorm2
[function]
[call site]
00524
RansDecRenormSafe
[function]
[call site]
00525
RansDecRenormSafe
[function]
[call site]
00526
RansDecRenormSafe
[function]
[call site]
00527
RansDecRenormSafe
[function]
[call site]
00528
RansDecGet
[function]
[call site]
00529
RansDecRenormSafe
[function]
[call site]
00530
htscodecs_tls_free
[function]
[call site]
00531
rans_uncompress_O0
[function]
[call site]
00535
RansDecInit
[function]
[call site]
00536
RansDecInit
[function]
[call site]
00537
RansDecInit
[function]
[call site]
00538
RansDecInit
[function]
[call site]
00539
RansDecRenorm2
[function]
[call site]
00540
RansDecRenorm2
[function]
[call site]
00541
RansDecRenormSafe
[function]
[call site]
00542
RansDecRenormSafe
[function]
[call site]
00543
RansDecRenormSafe
[function]
[call site]
00544
RansDecRenormSafe
[function]
[call site]
00545
fqz_decompress
[function]
[call site]
00546
uncompress_block_fqz2f
[function]
[call site]
00547
var_get_u32
[function]
[call site]
00548
fqz_read_parameters
[function]
[call site]
00549
read_array
[function]
[call site]
00550
fqz_read_parameters1
[function]
[call site]
00551
read_array
[function]
[call site]
00552
read_array
[function]
[call site]
00553
read_array
[function]
[call site]
00554
fqz_free_parameters
[function]
[call site]
00555
fqz_create_models
[function]
[call site]
00556
htscodecs_tls_alloc
[function]
[call site]
00557
SIMPLE_MODEL256_init
[function]
[call site]
00558
SIMPLE_MODEL256_init
[function]
[call site]
00559
SIMPLE_MODEL2_init
[function]
[call site]
00560
SIMPLE_MODEL2_init
[function]
[call site]
00561
SIMPLE_MODEL256_init
[function]
[call site]
00562
RC_SetInput
[function]
[call site]
00563
RC_StartDecode
[function]
[call site]
00564
realloc
[call site]
00565
realloc
[call site]
00566
decompress_new_read
[function]
[call site]
00567
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00568
RC_GetFreq
[function]
[call site]
00569
RC_Decode
[function]
[call site]
00570
SIMPLE_MODEL256_normalize
[function]
[call site]
00571
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00572
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00573
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00574
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00575
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00576
SIMPLE_MODEL2_normalize
[function]
[call site]
00577
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00578
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00579
fqz_update_ctx
[function]
[call site]
00580
realloc
[call site]
00581
realloc
[call site]
00582
RC_FinishDecode
[function]
[call site]
00583
fqz_destroy_models
[function]
[call site]
00584
htscodecs_tls_free
[function]
[call site]
00585
fqz_free_parameters
[function]
[call site]
00586
fqz_destroy_models
[function]
[call site]
00587
fqz_free_parameters
[function]
[call site]
00588
rans_uncompress_4x16
[function]
[call site]
00589
rans_uncompress_to_4x16
[function]
[call site]
00590
var_get_u32
[function]
[call site]
00591
var_get_u32
[function]
[call site]
00592
rans_uncompress_to_4x16
[function]
[call site]
00593
unstripe
[function]
[call site]
00594
var_get_u32
[function]
[call site]
00595
hts_unpack_meta
[function]
[call site]
00596
var_get_u32
[function]
[call site]
00597
var_get_u32
[function]
[call site]
00598
var_get_u32
[function]
[call site]
00599
var_get_u32
[function]
[call site]
00600
rans_dec_func
[function]
[call site]
00601
pthread_once
[call site]
00602
htscodecs_tls_cpu_init
[function]
[call site]
00603
__get_cpuid_max
[function]
[call site]
00604
not_ancient_darwin
[function]
[call site]
00605
strerror
[call site]
00606
fprintf
[call site]
00607
fprintf
[call site]
00608
rans_dec_func
[function]
[call site]
00609
hts_rle_decode
[function]
[call site]
00610
var_get_u32
[function]
[call site]
00611
hts_unpack
[function]
[call site]
00612
arith_uncompress_to
[function]
[call site]
00613
var_get_u32
[function]
[call site]
00614
var_get_u32
[function]
[call site]
00615
arith_uncompress_to
[function]
[call site]
00616
unstripe
[function]
[call site]
00617
var_get_u32
[function]
[call site]
00618
hts_unpack_meta
[function]
[call site]
00619
var_get_u32
[function]
[call site]
00620
BZ2_bzBuffToBuffDecompress
[call site]
00621
arith_uncompress_O1_RLE
[function]
[call site]
00622
htscodecs_tls_alloc
[function]
[call site]
00623
SIMPLE_MODEL256_init
[function]
[call site]
00624
htscodecs_tls_alloc
[function]
[call site]
00625
htscodecs_tls_free
[function]
[call site]
00626
SIMPLE_MODEL258_init
[function]
[call site]
00627
RC_SetInput
[function]
[call site]
00628
RC_StartDecode
[function]
[call site]
00629
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00630
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00631
SIMPLE_MODEL258_normalize
[function]
[call site]
00632
RC_FinishDecode
[function]
[call site]
00633
htscodecs_tls_free
[function]
[call site]
00634
htscodecs_tls_free
[function]
[call site]
00635
htscodecs_tls_free
[function]
[call site]
00636
htscodecs_tls_free
[function]
[call site]
00637
arith_uncompress_O0_RLE
[function]
[call site]
00638
SIMPLE_MODEL256_init
[function]
[call site]
00639
htscodecs_tls_alloc
[function]
[call site]
00640
SIMPLE_MODEL258_init
[function]
[call site]
00641
RC_SetInput
[function]
[call site]
00642
RC_StartDecode
[function]
[call site]
00643
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00644
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00645
RC_FinishDecode
[function]
[call site]
00646
htscodecs_tls_free
[function]
[call site]
00647
htscodecs_tls_free
[function]
[call site]
00648
arith_uncompress_O1
[function]
[call site]
00649
htscodecs_tls_alloc
[function]
[call site]
00650
SIMPLE_MODEL256_init
[function]
[call site]
00651
RC_SetInput
[function]
[call site]
00652
RC_StartDecode
[function]
[call site]
00653
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00654
RC_FinishDecode
[function]
[call site]
00655
htscodecs_tls_free
[function]
[call site]
00656
htscodecs_tls_free
[function]
[call site]
00657
arith_uncompress_O0
[function]
[call site]
00658
SIMPLE_MODEL256_init
[function]
[call site]
00659
RC_SetInput
[function]
[call site]
00660
RC_StartDecode
[function]
[call site]
00661
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00662
RC_FinishDecode
[function]
[call site]
00663
hts_unpack
[function]
[call site]
00664
tok3_decode_names
[function]
[call site]
00665
create_context
[function]
[call site]
00666
fprintf
[call site]
00667
htscodecs_tls_alloc
[function]
[call site]
00668
uncompressed_size
[function]
[call site]
00669
var_get_u32
[function]
[call site]
00670
var_get_u32
[function]
[call site]
00671
uncompress
[function]
[call site]
00672
var_get_u32
[function]
[call site]
00673
arith_decode
[function]
[call site]
00674
var_get_u32
[function]
[call site]
00675
arith_uncompress_to
[function]
[call site]
00676
rans_decode
[function]
[call site]
00677
var_get_u32
[function]
[call site]
00678
rans_uncompress_to_4x16
[function]
[call site]
00679
decode_name
[function]
[call site]
00680
decode_token_type
[function]
[call site]
00681
decode_token_int
[function]
[call site]
00682
strlen
[call site]
00683
strcpy
[call site]
00684
strlen
[call site]
00685
decode_token_type
[function]
[call site]
00686
decode_token_char
[function]
[call site]
00687
decode_token_alpha
[function]
[call site]
00688
decode_token_int1
[function]
[call site]
00689
decode_token_int
[function]
[call site]
00690
append_uint32_fixed
[function]
[call site]
00691
decode_token_int1
[function]
[call site]
00692
append_uint32_fixed
[function]
[call site]
00693
decode_token_int
[function]
[call site]
00694
append_uint32_var
[function]
[call site]
00695
decode_token_int1
[function]
[call site]
00696
append_uint32_var
[function]
[call site]
00697
append_uint32_var
[function]
[call site]
00698
append_uint32_fixed
[function]
[call site]
00699
realloc
[call site]
00700
free_context
[function]
[call site]
00701
pool_destroy
[function]
[call site]
00702
htscodecs_tls_free
[function]
[call site]
00703
free_context
[function]
[call site]
00704
cram_free_container
[function]
[call site]
00705
cram_free_block
[function]
[call site]
00706
int32_get_blk
[function]
[call site]
00707
cram_free_container
[function]
[call site]
00708
cram_free_block
[function]
[call site]
00709
cram_free_container
[function]
[call site]
00710
cram_free_block
[function]
[call site]
00711
cram_free_block
[function]
[call site]
00712
cram_read_block
[function]
[call site]
00713
cram_free_container
[function]
[call site]
00714
cram_free_block
[function]
[call site]
00715
cram_free_container
[function]
[call site]
00716
hread
[function]
[call site]
00717
cram_free_container
[function]
[call site]
00718
cram_free_container
[function]
[call site]
00719
sam_hdr_init
[function]
[call site]
00720
calloc
[call site]
00721
sam_hdr_add_lines
[function]
[call site]
00722
sam_hdr_fill_hrecs
[function]
[call site]
00723
sam_hrecs_new
[function]
[call site]
00724
calloc
[call site]
00725
kh_init_sam_hrecs_t
[function]
[call site]
00726
calloc
[call site]
00727
kh_init_m_s2i
[function]
[call site]
00728
calloc
[call site]
00729
kh_init_m_s2i
[function]
[call site]
00730
kh_init_m_s2i
[function]
[call site]
00731
pool_create
[function]
[call site]
00732
next_power_2
[function]
[call site]
00733
pool_create
[function]
[call site]
00734
string_pool_create
[function]
[call site]
00735
sam_hrecs_init_type_order
[function]
[call site]
00736
calloc
[call site]
00737
kh_destroy_sam_hrecs_t
[function]
[call site]
00738
pool_destroy
[function]
[call site]
00739
pool_destroy
[function]
[call site]
00740
string_pool_destroy
[function]
[call site]
00741
sam_hrecs_refs_from_targets_array
[function]
[call site]
00742
hts_log
[function]
[call site]
00743
hts_realloc_p
[function]
[call site]
00744
hts_prod_sat2
[function]
[call site]
00745
hts_realloc
[function]
[call site]
00746
__errno_location
[call site]
00747
realloc
[call site]
00748
kh_grow_to_fit_m_s2i
[function]
[call site]
00749
kh_resize_m_s2i
[function]
[call site]
00750
__errno_location
[call site]
00751
__ac_FNV1a_hash_string
[function]
[call site]
00752
string_dup
[function]
[call site]
00753
strlen
[call site]
00754
string_ndup
[function]
[call site]
00755
string_alloc
[function]
[call site]
00756
new_string_pool
[function]
[call site]
00757
hts_realloc_p
[function]
[call site]
00758
hts_prod_sat2
[function]
[call site]
00759
hts_realloc
[function]
[call site]
00760
hts_malloc
[function]
[call site]
00761
kh_get_s2i
[function]
[call site]
00762
__ac_FNV1a_hash_string
[function]
[call site]
00763
strcmp
[call site]
00764
kh_put_m_s2i
[function]
[call site]
00765
strcmp
[call site]
00766
hts_log
[function]
[call site]
00767
__errno_location
[call site]
00768
strerror
[call site]
00769
hts_log
[function]
[call site]
00770
kh_get_m_s2i
[function]
[call site]
00771
kh_del_m_s2i
[function]
[call site]
00772
sam_hrecs_free
[function]
[call site]
00773
kh_destroy_sam_hrecs_t
[function]
[call site]
00774
kh_destroy_m_s2i
[function]
[call site]
00775
kh_destroy_m_s2i
[function]
[call site]
00776
kh_destroy_m_s2i
[function]
[call site]
00777
pool_destroy
[function]
[call site]
00778
pool_destroy
[function]
[call site]
00779
string_pool_destroy
[function]
[call site]
00780
sam_hrecs_parse_lines
[function]
[call site]
00781
strlen
[call site]
00782
sam_hrecs_error
[function]
[call site]
00783
hts_log
[function]
[call site]
00784
sam_hrecs_parse_single_line
[function]
[call site]
00785
sam_hrecs_error
[function]
[call site]
00786
isalpha_c
[function]
[call site]
00787
__ctype_b_loc
[call site]
00788
sam_hrecs_error
[function]
[call site]
00789
TYPEKEY
[function]
[call site]
00790
pool_alloc
[function]
[call site]
00791
new_pool
[function]
[call site]
00792
hts_realloc_ps
[function]
[call site]
00793
hts_add_sat2
[function]
[call site]
00794
hts_prod_sat2
[function]
[call site]
00795
hts_realloc
[function]
[call site]
00796
hts_malloc_p
[function]
[call site]
00797
kh_put_sam_hrecs_t
[function]
[call site]
00798
kh_resize_sam_hrecs_t
[function]
[call site]
00799
realloc
[call site]
00800
TYPEKEY
[function]
[call site]
00801
parse_comment_line
[function]
[call site]
00802
sam_hrecs_error
[function]
[call site]
00803
warn_if_known_stderr
[function]
[call site]
00804
kmemmem
[function]
[call site]
00805
boyer_moore
[function]
[call site]
00806
memchr
[call site]
00807
ksBM_prep
[function]
[call site]
00808
hts_calloc_ps
[function]
[call site]
00809
hts_add_sat2
[function]
[call site]
00810
hts_calloc
[function]
[call site]
00811
__errno_location
[call site]
00812
calloc
[call site]
00813
calloc
[call site]
00814
karp_rabin
[function]
[call site]
00815
fast_exp
[function]
[call site]
00816
memcmp
[call site]
00817
known_stderr
[function]
[call site]
00818
hts_log
[function]
[call site]
00819
hts_log
[function]
[call site]
00820
kmemmem
[function]
[call site]
00821
known_stderr
[function]
[call site]
00822
kmemmem
[function]
[call site]
00823
known_stderr
[function]
[call site]
00824
pool_alloc
[function]
[call site]
00825
string_ndup
[function]
[call site]
00826
parse_noncomment_line
[function]
[call site]
00827
TYPEKEY
[function]
[call site]
00828
sam_hrecs_error
[function]
[call site]
00829
warn_if_known_stderr
[function]
[call site]
00830
sam_hrecs_error
[function]
[call site]
00831
warn_if_known_stderr
[function]
[call site]
00832
pool_alloc
[function]
[call site]
00833
string_ndup
[function]
[call site]
00834
sam_hrecs_global_list_add
[function]
[call site]
00835
TYPEKEY
[function]
[call site]
00836
__assert_fail
[call site]
00837
sam_hrecs_free_tags
[function]
[call site]
00838
pool_free
[function]
[call site]
00839
pool_free
[function]
[call site]
00840
TYPEKEY
[function]
[call site]
00841
kh_grow_to_fit_m_s2i
[function]
[call site]
00842
hts_realloc_p
[function]
[call site]
00843
sam_hrecs_update_hashes
[function]
[call site]
00844
TYPEKEY
[function]
[call site]
00845
__assert_fail
[call site]
00846
__assert_fail
[call site]
00847
strtoll
[call site]
00848
__assert_fail
[call site]
00849
hts_log
[function]
[call site]
00850
hts_log
[function]
[call site]
00851
hts_log
[function]
[call site]
00852
kh_get_m_s2i
[function]
[call site]
00853
snprintf
[call site]
00854
sam_hrecs_update
[function]
[call site]
00855
sam_hrecs_vupdate
[function]
[call site]
00856
sam_hrecs_find_key
[function]
[call site]
00857
pool_alloc
[function]
[call site]
00858
strlen
[call site]
00859
hts_add_sat2
[function]
[call site]
00860
string_alloc
[function]
[call site]
00861
snprintf
[call site]
00862
sam_hrecs_add_ref_altnames
[function]
[call site]
00863
kstrtok
[function]
[call site]
00864
strchr
[call site]
00865
strlen
[call site]
00866
string_ndup
[function]
[call site]
00867
kh_put_m_s2i
[function]
[call site]
00868
hts_log
[function]
[call site]
00869
strcmp
[call site]
00870
sam_hrecs_add_ref_altnames
[function]
[call site]
00871
strcmp
[call site]
00872
hts_log
[function]
[call site]
00873
hts_log
[function]
[call site]
00874
hts_realloc_p
[function]
[call site]
00875
kh_put_m_s2i
[function]
[call site]
00876
sam_hrecs_add_ref_altnames
[function]
[call site]
00877
TYPEKEY
[function]
[call site]
00878
sam_hrecs_find_key
[function]
[call site]
00879
hts_log
[function]
[call site]
00880
__assert_fail
[call site]
00881
kh_get_m_s2i
[function]
[call site]
00882
__assert_fail
[call site]
00883
hts_log
[function]
[call site]
00884
hts_realloc_p
[function]
[call site]
00885
kh_put_m_s2i
[function]
[call site]
00886
TYPEKEY
[function]
[call site]
00887
hts_realloc_p
[function]
[call site]
00888
__assert_fail
[call site]
00889
hts_log
[function]
[call site]
00890
kh_get_m_s2i
[function]
[call site]
00891
kh_put_m_s2i
[function]
[call site]
00892
hts_realloc_p
[function]
[call site]
00893
sam_hrecs_free
[function]
[call site]
00894
add_stub_ref_sq_lines
[function]
[call site]
00895
snprintf
[call site]
00896
sam_hrecs_add
[function]
[call site]
00897
sam_hrecs_vadd
[function]
[call site]
00898
TYPEKEY
[function]
[call site]
00899
strncmp
[call site]
00900
sam_hrecs_find_type_id
[function]
[call site]
00901
kh_get_m_s2i
[function]
[call site]
00902
kh_get_m_s2i
[function]
[call site]
00903
kh_get_m_s2i
[function]
[call site]
00904
TYPEKEY
[function]
[call site]
00905
kh_get_sam_hrecs_t
[function]
[call site]
00906
sam_hrecs_vupdate
[function]
[call site]
00907
pool_alloc
[function]
[call site]
00908
kh_put_sam_hrecs_t
[function]
[call site]
00909
__assert_fail
[call site]
00910
sam_hrecs_global_list_add
[function]
[call site]
00911
__assert_fail
[call site]
00912
__assert_fail
[call site]
00913
__assert_fail
[call site]
00914
__assert_fail
[call site]
00915
strncmp
[call site]
00916
pool_alloc
[function]
[call site]
00917
strncmp
[call site]
00918
strlen
[call site]
00919
hts_add_sat2
[function]
[call site]
00920
string_alloc
[function]
[call site]
00921
snprintf
[call site]
00922
strlen
[call site]
00923
string_ndup
[function]
[call site]
00924
strncmp
[call site]
00925
pool_alloc
[function]
[call site]
00926
strncmp
[call site]
00927
strlen
[call site]
00928
hts_add_sat2
[function]
[call site]
00929
string_alloc
[function]
[call site]
00930
snprintf
[call site]
00931
strlen
[call site]
00932
string_ndup
[function]
[call site]
00933
TYPEKEY
[function]
[call site]
00934
sam_hrecs_update_hashes
[function]
[call site]
00935
strncmp
[call site]
00936
hts_log
[function]
[call site]
00937
sam_hrecs_free
[function]
[call site]
00938
rebuild_target_arrays
[function]
[call site]
00939
sam_hdr_update_target_arrays
[function]
[call site]
00940
hts_realloc_p
[function]
[call site]
00941
hts_realloc_p
[function]
[call site]
00942
strcmp
[call site]
00943
kh_get_s2i
[function]
[call site]
00944
kh_del_s2i
[function]
[call site]
00945
strdup
[call site]
00946
kh_get_s2i
[function]
[call site]
00947
kh_del_s2i
[function]
[call site]
00948
kh_init_s2i
[function]
[call site]
00949
calloc
[call site]
00950
kh_put_s2i
[function]
[call site]
00951
kh_resize_s2i
[function]
[call site]
00952
__errno_location
[call site]
00953
realloc
[call site]
00954
kh_get_s2i
[function]
[call site]
00955
kh_del_s2i
[function]
[call site]
00956
sam_hrecs_parse_lines
[function]
[call site]
00957
rebuild_target_arrays
[function]
[call site]
00958
redact_header_text
[function]
[call site]
00959
__assert_fail
[call site]
00960
sam_hdr_destroy
[function]
[call site]
00961
sam_hrecs_free
[function]
[call site]
00962
kh_destroy_s2i
[function]
[call site]
00963
cram_free_file_def
[function]
[call site]
00964
calloc
[call site]
00965
strncpy
[call site]
00966
cram_init_tables
[function]
[call site]
00967
strrchr
[call site]
00968
strdup
[call site]
00969
refs_create
[function]
[call site]
00970
calloc
[call site]
00971
string_pool_create
[function]
[call site]
00972
kh_init_refs
[function]
[call site]
00973
calloc
[call site]
00974
pthread_mutex_init
[call site]
00975
refs_free
[function]
[call site]
00976
string_pool_destroy
[function]
[call site]
00977
ref_entry_free_seq
[function]
[call site]
00978
mfclose
[function]
[call site]
00979
mfflush
[function]
[call site]
00980
fwrite
[call site]
00981
fflush
[call site]
00982
fseek
[call site]
00983
fwrite
[call site]
00984
fflush
[call site]
00985
ftell
[call site]
00986
fileno
[call site]
00987
ftell
[call site]
00988
ftruncate
[call site]
00989
munmap
[call site]
00990
fclose
[call site]
00991
mfdestroy
[function]
[call site]
00992
kh_destroy_refs
[function]
[call site]
00993
bgzf_close
[function]
[call site]
00994
bgzf_flush
[function]
[call site]
00995
mt_queue
[function]
[call site]
00996
pthread_mutex_lock
[call site]
00997
pool_alloc
[function]
[call site]
00998
pthread_mutex_unlock
[call site]
00999
hts_tpool_dispatch3
[function]
[call site]
01000
pthread_mutex_lock
[call site]
01001
pthread_mutex_unlock
[call site]
01002
__errno_location
[call site]
01003
pthread_mutex_unlock
[call site]
01004
pthread_cond_wait
[call site]
01005
pthread_mutex_unlock
[call site]
01006
wake_next_worker
[function]
[call site]
01007
pthread_mutex_lock
[call site]
01008
__assert_fail
[call site]
01009
__assert_fail
[call site]
01010
pthread_cond_signal
[call site]
01011
pthread_mutex_unlock
[call site]
01012
pthread_mutex_unlock
[call site]
01013
bgzf_encode_level0_func
[function]
[call site]
01014
u16_to_le
[function]
[call site]
01015
u16_to_le
[function]
[call site]
01016
u16_to_le
[function]
[call site]
01017
hts_crc32
[function]
[call site]
01018
crc32
[call site]
01019
u32_to_le
[function]
[call site]
01020
u32_to_le
[function]
[call site]
01021
job_cleanup
[function]
[call site]
01022
pthread_mutex_lock
[call site]
01023
pool_free
[function]
[call site]
01024
pthread_mutex_unlock
[call site]
01025
hts_tpool_dispatch3
[function]
[call site]
01026
bgzf_encode_func
[function]
[call site]
01027
bgzf_compress
[function]
[call site]
01028
u16_to_le
[function]
[call site]
01029
u16_to_le
[function]
[call site]
01030
deflateInit2_
[call site]
01031
bgzf_zerr
[function]
[call site]
01032
hts_log
[function]
[call site]
01033
deflate
[call site]
01034
deflateEnd
[call site]
01035
bgzf_zerr
[function]
[call site]
01036
hts_log
[function]
[call site]
01037
deflateEnd
[call site]
01038
deflateEnd
[call site]
01039
bgzf_zerr
[function]
[call site]
01040
hts_log
[function]
[call site]
01041
packInt16
[function]
[call site]
01042
crc32
[call site]
01043
packInt32
[function]
[call site]
01044
packInt32
[function]
[call site]
01045
job_cleanup
[function]
[call site]
01046
job_cleanup
[function]
[call site]
01047
pthread_mutex_lock
[call site]
01048
pthread_mutex_unlock
[call site]
01049
mt_flush_queue
[function]
[call site]
01050
pthread_mutex_lock
[call site]
01051
hts_tpool_process_is_shutdown
[function]
[call site]
01052
pthread_mutex_lock
[call site]
01053
pthread_mutex_unlock
[call site]
01054
pthread_mutex_unlock
[call site]
01055
hts_usleep
[function]
[call site]
01056
nanosleep
[call site]
01057
pthread_mutex_lock
[call site]
01058
pthread_mutex_unlock
[call site]
01059
hts_tpool_process_flush
[function]
[call site]
01060
pthread_mutex_lock
[call site]
01061
pthread_cond_signal
[call site]
01062
pthread_cond_wait
[call site]
01063
gettimeofday
[call site]
01064
pthread_cond_timedwait
[call site]
01065
gettimeofday
[call site]
01066
pthread_cond_timedwait
[call site]
01067
pthread_mutex_unlock
[call site]
01068
pthread_mutex_lock
[call site]
01069
pthread_mutex_unlock
[call site]
01070
hflush
[function]
[call site]
01071
flush_buffer
[function]
[call site]
01072
__errno_location
[call site]
01073
bgzf_index_add_block
[function]
[call site]
01074
bgzf_index_grow
[function]
[call site]
01075
hts_realloc_p
[function]
[call site]
01076
deflate_block
[function]
[call site]
01077
bgzf_compress
[function]
[call site]
01078
bgzf_gzip_compress
[function]
[call site]
01079
deflate
[call site]
01080
bgzf_zerr
[function]
[call site]
01081
hts_log
[function]
[call site]
01082
hts_log
[function]
[call site]
01083
hts_log
[function]
[call site]
01084
bgzf_zerr
[function]
[call site]
01085
hts_log
[function]
[call site]
01086
hwrite
[function]
[call site]
01087
hfile_set_blksize
[function]
[call site]
01088
realloc
[call site]
01089
hwrite2
[function]
[call site]
01090
flush_buffer
[function]
[call site]
01091
__errno_location
[call site]
01092
hwrite2
[function]
[call site]
01093
hts_log
[function]
[call site]
01094
bgzf_close_mt
[function]
[call site]
01095
mt_destroy
[function]
[call site]
01096
pthread_mutex_lock
[call site]
01097
pthread_cond_signal
[call site]
01098
hts_tpool_wake_dispatch
[function]
[call site]
01099
pthread_mutex_lock
[call site]
01100
pthread_cond_signal
[call site]
01101
pthread_mutex_unlock
[call site]
01102
pthread_mutex_unlock
[call site]
01103
hts_tpool_process_is_shutdown
[function]
[call site]
01104
hts_tpool_process_destroy
[function]
[call site]
01105
pthread_mutex_lock
[call site]
01106
pthread_mutex_unlock
[call site]
01107
hts_tpool_process_reset
[function]
[call site]
01108
pthread_mutex_lock
[call site]
01109
pthread_mutex_unlock
[call site]
01110
hts_tpool_delete_result
[function]
[call site]
01111
hts_tpool_process_flush
[function]
[call site]
01112
pthread_mutex_lock
[call site]
01113
pthread_cond_signal
[call site]
01114
pthread_mutex_unlock
[call site]
01115
hts_tpool_delete_result
[function]
[call site]
01116
pthread_mutex_lock
[call site]
01117
hts_tpool_process_detach_locked
[function]
[call site]
01118
hts_tpool_process_shutdown_locked
[function]
[call site]
01119
pthread_cond_broadcast
[call site]
01120
pthread_cond_broadcast
[call site]
01121
pthread_cond_broadcast
[call site]
01122
pthread_cond_broadcast
[call site]
01123
pthread_mutex_unlock
[call site]
01124
pthread_cond_destroy
[call site]
01125
pthread_cond_destroy
[call site]
01126
pthread_cond_destroy
[call site]
01127
pthread_cond_destroy
[call site]
01128
pthread_mutex_unlock
[call site]
01129
pthread_join
[call site]
01130
pthread_mutex_destroy
[call site]
01131
pthread_mutex_destroy
[call site]
01132
pthread_mutex_destroy
[call site]
01133
pthread_cond_destroy
[call site]
01134
pool_free
[function]
[call site]
01135
hts_tpool_destroy
[function]
[call site]
01136
pthread_mutex_lock
[call site]
01137
pthread_cond_signal
[call site]
01138
pthread_mutex_unlock
[call site]
01139
pthread_join
[call site]
01140
pthread_mutex_destroy
[call site]
01141
pthread_cond_destroy
[call site]
01142
pool_destroy
[function]
[call site]
01143
fflush
[call site]
01144
deflate_block
[function]
[call site]
01145
bgzf_zerr
[function]
[call site]
01146
hts_log
[function]
[call site]
01147
bgzf_close_mt
[function]
[call site]
01148
hwrite
[function]
[call site]
01149
hflush
[function]
[call site]
01150
hts_log
[function]
[call site]
01151
bgzf_close_mt
[function]
[call site]
01152
inflateEnd
[call site]
01153
deflateEnd
[call site]
01154
bgzf_zerr
[function]
[call site]
01155
hts_log
[function]
[call site]
01156
hclose
[function]
[call site]
01157
writebuffer_is_nonempty
[function]
[call site]
01158
hflush
[function]
[call site]
01159
__errno_location
[call site]
01160
hfile_destroy
[function]
[call site]
01161
__errno_location
[call site]
01162
bgzf_index_destroy
[function]
[call site]
01163
free_cache
[function]
[call site]
01164
kh_destroy_bgzf_cache
[function]
[call site]
01165
bgzf_clear_private_data
[function]
[call site]
01166
__assert_fail
[call site]
01167
pthread_mutex_destroy
[call site]
01168
pthread_mutex_init
[call site]
01169
pthread_mutex_init
[call site]
01170
pthread_mutex_init
[call site]
01171
pthread_mutex_init
[call site]
01172
cram_new_metrics
[function]
[call site]
01173
calloc
[call site]
01174
kh_init_m_metrics
[function]
[call site]
01175
calloc
[call site]
01176
refs_from_header
[function]
[call site]
01177
sam_hdr_fill_hrecs
[function]
[call site]
01178
hts_realloc_ps
[function]
[call site]
01179
kh_get_refs
[function]
[call site]
01180
__ac_FNV1a_hash_string
[function]
[call site]
01181
strcmp
[call site]
01182
calloc
[call site]
01183
string_dup
[function]
[call site]
01184
sam_hrecs_find_type_id
[function]
[call site]
01185
sam_hrecs_find_key
[function]
[call site]
01186
string_dup
[function]
[call site]
01187
sam_hrecs_find_key
[function]
[call site]
01188
strtoll
[call site]
01189
kh_put_refs
[function]
[call site]
01190
kh_resize_refs
[function]
[call site]
01191
__errno_location
[call site]
01192
realloc
[call site]
01193
cram_set_option
[function]
[call site]
01194
cram_set_voption
[function]
[call site]
01195
__errno_location
[call site]
01196
__errno_location
[call site]
01197
strdup
[call site]
01198
__errno_location
[call site]
01199
__errno_location
[call site]
01200
__errno_location
[call site]
01201
__errno_location
[call site]
01202
__errno_location
[call site]
01203
__errno_location
[call site]
01204
__errno_location
[call site]
01205
__errno_location
[call site]
01206
__errno_location
[call site]
01207
__errno_location
[call site]
01208
__errno_location
[call site]
01209
__errno_location
[call site]
01210
__errno_location
[call site]
01211
__errno_location
[call site]
01212
refs_free
[function]
[call site]
01213
cram_seek_to_refpos
[function]
[call site]
01214
cram_index_query
[function]
[call site]
01215
cram_seek
[function]
[call site]
01216
cram_drain_rqueue
[function]
[call site]
01217
hts_tpool_process_empty
[function]
[call site]
01218
pthread_mutex_lock
[call site]
01219
pthread_mutex_unlock
[call site]
01220
hts_tpool_next_result_wait
[function]
[call site]
01221
pthread_mutex_lock
[call site]
01222
hts_tpool_next_result_locked
[function]
[call site]
01223
pthread_cond_signal
[call site]
01224
wake_next_worker
[function]
[call site]
01225
gettimeofday
[call site]
01226
pthread_mutex_unlock
[call site]
01227
hts_tpool_process_destroy
[function]
[call site]
01228
pthread_cond_timedwait
[call site]
01229
pthread_mutex_unlock
[call site]
01230
hts_tpool_result_data
[function]
[call site]
01231
cram_free_container
[function]
[call site]
01232
cram_free_slice
[function]
[call site]
01233
hts_tpool_delete_result
[function]
[call site]
01234
cram_free_container
[function]
[call site]
01235
cram_free_slice
[function]
[call site]
01236
cram_free_container
[function]
[call site]
01237
hseek
[function]
[call site]
01238
pthread_mutex_lock
[call site]
01239
pthread_mutex_unlock
[call site]
01240
cram_free_container
[function]
[call site]
01241
cram_free_container
[function]
[call site]
01242
pthread_mutex_lock
[call site]
01243
pthread_mutex_unlock
[call site]
01244
pthread_mutex_lock
[call site]
01245
pthread_mutex_unlock
[call site]
01246
pthread_mutex_lock
[call site]
01247
pthread_mutex_unlock
[call site]
01248
cram_load_reference
[function]
[call site]
01249
refs_load_fai
[function]
[call site]
01250
strlen
[call site]
01251
refs_create
[function]
[call site]
01252
bgzf_close
[function]
[call site]
01253
strstr
[call site]
01254
string_ndup
[function]
[call site]
01255
snprintf
[call site]
01256
strcmp
[call site]
01257
string_ndup
[function]
[call site]
01258
snprintf
[call site]
01259
string_dup
[function]
[call site]
01260
snprintf
[call site]
01261
bgzf_open_ref
[function]
[call site]
01262
strncmp
[call site]
01263
hisremote
[function]
[call site]
01264
find_scheme_handler
[function]
[call site]
01265
snprintf
[call site]
01266
access
[call site]
01267
fai_build
[function]
[call site]
01268
fai_build3
[function]
[call site]
01269
fai_build3_core
[function]
[call site]
01270
bgzf_open
[function]
[call site]
01271
strchr
[call site]
01272
hopen
[function]
[call site]
01273
bgzf_read_init
[function]
[call site]
01274
hclose_abruptly
[function]
[call site]
01275
strchr
[call site]
01276
hopen
[function]
[call site]
01277
bgzf_write_init
[function]
[call site]
01278
__errno_location
[call site]
01279
ed_is_big
[function]
[call site]
01280
__errno_location
[call site]
01281
strerror
[call site]
01282
hts_log
[function]
[call site]
01283
bgzf_index_build_init
[function]
[call site]
01284
bgzf_index_destroy
[function]
[call site]
01285
calloc
[call site]
01286
hts_log
[function]
[call site]
01287
fai_build_core
[function]
[call site]
01288
calloc
[call site]
01289
kh_init_s
[function]
[call site]
01290
bgzf_getc_
[function]
[call site]
01291
bgzf_getc
[function]
[call site]
01292
bgzf_read_block
[function]
[call site]
01293
hts_tpool_next_result_wait
[function]
[call site]
01294
hts_tpool_result_data
[function]
[call site]
01295
hts_malloc_p
[function]
[call site]
01296
mt_destroy
[function]
[call site]
01297
hts_log
[function]
[call site]
01298
hts_tpool_delete_result
[function]
[call site]
01299
hts_log
[function]
[call site]
01300
hts_tpool_delete_result
[function]
[call site]
01301
bgzf_index_add_block
[function]
[call site]
01302
hts_tpool_delete_result
[function]
[call site]
01303
pthread_mutex_lock
[call site]
01304
pool_free
[function]
[call site]
01305
pthread_mutex_unlock
[call site]
01306
hts_tpool_delete_result
[function]
[call site]
01307
bgzf_htell
[function]
[call site]
01308
pthread_mutex_lock
[call site]
01309
pthread_mutex_unlock
[call site]
01310
htell
[function]
[call site]
01311
hread
[function]
[call site]
01312
__errno_location
[call site]
01313
strerror
[call site]
01314
hts_log
[function]
[call site]
01315
inflate_gzip_block
[function]
[call site]
01316
hread
[function]
[call site]
01317
inflate
[call site]
01318
bgzf_zerr
[function]
[call site]
01319
hts_log
[function]
[call site]
01320
hpeek
[function]
[call site]
01321
inflateReset
[call site]
01322
bgzf_zerr
[function]
[call site]
01323
hts_log
[function]
[call site]
01324
hts_log
[function]
[call site]
01325
hts_log
[function]
[call site]
01326
load_block_from_cache
[function]
[call site]
01327
kh_get_bgzf_cache
[function]
[call site]
01328
hseek
[function]
[call site]
01329
hts_log
[function]
[call site]
01330
exit
[call site]
01331
hread
[function]
[call site]
01332
hts_log
[function]
[call site]
01333
check_header
[function]
[call site]
01334
unpackInt16
[function]
[call site]
01335
unpackInt16
[function]
[call site]
01336
hts_log
[function]
[call site]
01337
hread
[function]
[call site]
01338
calloc
[call site]
01339
inflateInit2_
[call site]
01340
bgzf_zerr
[function]
[call site]
01341
hts_log
[function]
[call site]
01342
inflate_gzip_block
[function]
[call site]
01343
hts_log
[function]
[call site]
01344
unpackInt16
[function]
[call site]
01345
hts_log
[function]
[call site]
01346
hread
[function]
[call site]
01347
hts_log
[function]
[call site]
01348
inflate_block
[function]
[call site]
01349
le_to_u32
[function]
[call site]
01350
bgzf_uncompress
[function]
[call site]
01351
inflateInit2_
[call site]
01352
bgzf_zerr
[function]
[call site]
01353
hts_log
[function]
[call site]
01354
inflate
[call site]
01355
bgzf_zerr
[function]
[call site]
01356
hts_log
[function]
[call site]
01357
inflateEnd
[call site]
01358
bgzf_zerr
[function]
[call site]
01359
hts_log
[function]
[call site]
01360
inflateEnd
[call site]
01361
bgzf_zerr
[function]
[call site]
01362
hts_log
[function]
[call site]
01363
crc32
[call site]
01364
hts_log
[function]
[call site]
01365
bgzf_zerr
[function]
[call site]
01366
hts_log
[function]
[call site]
01367
bgzf_htell
[function]
[call site]
01368
bgzf_index_add_block
[function]
[call site]
01369
cache_block
[function]
[call site]
01370
kh_del_bgzf_cache
[function]
[call site]
01371
kh_put_bgzf_cache
[function]
[call site]
01372
kh_resize_bgzf_cache
[function]
[call site]
01373
__errno_location
[call site]
01374
realloc
[call site]
01375
bgzf_htell
[function]
[call site]
01376
hts_log
[function]
[call site]
01377
hts_log
[function]
[call site]
01378
bgzf_getc_
[function]
[call site]
01379
hts_log
[function]
[call site]
01380
__ctype_b_loc
[call site]
01381
hts_log
[function]
[call site]
01382
fai_insert_index
[function]
[call site]
01383
hts_log
[function]
[call site]
01384
hts_log
[function]
[call site]
01385
hts_log
[function]
[call site]
01386
hts_log
[function]
[call site]
01387
hts_realloc_p
[function]
[call site]
01388
hts_log
[function]
[call site]
01389
strdup
[call site]
01390
__errno_location
[call site]
01391
strerror
[call site]
01392
hts_log
[function]
[call site]
01393
kh_put_s
[function]
[call site]
01394
kh_resize_s
[function]
[call site]
01395
__ac_FNV1a_hash_string
[function]
[call site]
01396
__errno_location
[call site]
01397
strerror
[call site]
01398
hts_log
[function]
[call site]
01399
hts_log
[function]
[call site]
01400
__ctype_b_loc
[call site]
01401
kputc_
[function]
[call site]
01402
ks_resize
[function]
[call site]
01403
bgzf_getc_
[function]
[call site]
01404
kputsn
[function]
[call site]
01405
hts_log
[function]
[call site]
01406
bgzf_getc_
[function]
[call site]
01407
bgzf_utell
[function]
[call site]
01408
bgzf_getc_
[function]
[call site]
01409
bgzf_utell
[function]
[call site]
01410
hts_log
[function]
[call site]
01411
isgraph_
[function]
[call site]
01412
bgzf_getc_
[function]
[call site]
01413
hts_log
[function]
[call site]
01414
bgzf_getc_
[function]
[call site]
01415
bgzf_utell
[function]
[call site]
01416
hts_log
[function]
[call site]
01417
hts_log
[function]
[call site]
01418
isgraph_
[function]
[call site]
01419
bgzf_getc_
[function]
[call site]
01420
hts_log
[function]
[call site]
01421
hts_log
[function]
[call site]
01422
fai_insert_index
[function]
[call site]
01423
hts_log
[function]
[call site]
01424
fai_destroy
[function]
[call site]
01425
kh_destroy_s
[function]
[call site]
01426
bgzf_close
[function]
[call site]
01427
hts_log
[function]
[call site]
01428
ksprintf
[function]
[call site]
01429
ksprintf
[function]
[call site]
01430
bgzf_index_dump
[function]
[call site]
01431
hts_log
[function]
[call site]
01432
__errno_location
[call site]
01433
get_name_suffix
[function]
[call site]
01434
strlen
[call site]
01435
snprintf
[call site]
01436
hopen
[function]
[call site]
01437
bgzf_index_dump_hfile
[function]
[call site]
01438
hts_log
[function]
[call site]
01439
__errno_location
[call site]
01440
bgzf_flush
[function]
[call site]
01441
hwrite_uint64
[function]
[call site]
01442
ed_is_big
[function]
[call site]
01443
ed_swap_8
[function]
[call site]
01444
hwrite
[function]
[call site]
01445
hwrite_uint64
[function]
[call site]
01446
hwrite_uint64
[function]
[call site]
01447
__errno_location
[call site]
01448
strerror
[call site]
01449
hts_log
[function]
[call site]
01450
hclose
[function]
[call site]
01451
__errno_location
[call site]
01452
strerror
[call site]
01453
hts_log
[function]
[call site]
01454
hclose_abruptly
[function]
[call site]
01455
hts_log
[function]
[call site]
01456
bgzf_close
[function]
[call site]
01457
__errno_location
[call site]
01458
strerror
[call site]
01459
hts_log
[function]
[call site]
01460
hopen
[function]
[call site]
01461
__errno_location
[call site]
01462
strerror
[call site]
01463
hts_log
[function]
[call site]
01464
fai_save
[function]
[call site]
01465
kh_get_s
[function]
[call site]
01466
__assert_fail
[call site]
01467
snprintf
[call site]
01468
snprintf
[call site]
01469
hputs
[function]
[call site]
01470
strlen
[call site]
01471
hputs2
[function]
[call site]
01472
hwrite2
[function]
[call site]
01473
hputs
[function]
[call site]
01474
strerror
[call site]
01475
hts_log
[function]
[call site]
01476
hclose
[function]
[call site]
01477
__errno_location
[call site]
01478
strerror
[call site]
01479
hts_log
[function]
[call site]
01480
fai_destroy
[function]
[call site]
01481
__errno_location
[call site]
01482
bgzf_close
[function]
[call site]
01483
fai_destroy
[function]
[call site]
01484
__errno_location
[call site]
01485
bgzf_open
[function]
[call site]
01486
perror
[call site]
01487
bgzf_index_load
[function]
[call site]
01488
get_name_suffix
[function]
[call site]
01489
hopen
[function]
[call site]
01490
bgzf_index_load_hfile
[function]
[call site]
01491
calloc
[call site]
01492
hread_uint64
[function]
[call site]
01493
hread
[function]
[call site]
01494
ed_is_big
[function]
[call site]
01495
ed_swap_8p
[function]
[call site]
01496
hread_uint64
[function]
[call site]
01497
hread_uint64
[function]
[call site]
01498
__errno_location
[call site]
01499
strerror
[call site]
01500
hts_log
[function]
[call site]
01501
hclose
[function]
[call site]
01502
__errno_location
[call site]
01503
strerror
[call site]
01504
hts_log
[function]
[call site]
01505
hclose_abruptly
[function]
[call site]
01506
hts_log
[function]
[call site]
01507
bgzf_close
[function]
[call site]
01508
hts_log
[function]
[call site]
01509
hopen
[function]
[call site]
01510
hts_log
[function]
[call site]
01511
perror
[call site]
01512
hgets
[function]
[call site]
01513
__errno_location
[call site]
01514
hgetln
[function]
[call site]
01515
hgetdelim
[function]
[call site]
01516
__errno_location
[call site]
01517
writebuffer_is_nonempty
[function]
[call site]
01518
__errno_location
[call site]
01519
memchr
[call site]
01520
refill_buffer
[function]
[call site]
01521
isspace_c
[function]
[call site]
01522
string_dup
[function]
[call site]
01523
isspace_c
[function]
[call site]
01524
strtoll
[call site]
01525
isspace_c
[function]
[call site]
01526
strtoll
[call site]
01527
isspace_c
[function]
[call site]
01528
strtol
[call site]
01529
isspace_c
[function]
[call site]
01530
strtol
[call site]
01531
kh_put_refs
[function]
[call site]
01532
hts_realloc_p
[function]
[call site]
01533
hclose
[function]
[call site]
01534
hclose_abruptly
[function]
[call site]
01535
refs_free
[function]
[call site]
01536
sanitise_SQ_lines
[function]
[call site]
01537
kh_get_refs
[function]
[call site]
01538
strcmp
[call site]
01539
__assert_fail
[call site]
01540
hts_log
[function]
[call site]
01541
refs_free
[function]
[call site]
01542
refs_create
[function]
[call site]
01543
refs_from_header
[function]
[call site]
01544
refs2id
[function]
[call site]
01545
calloc
[call site]
01546
kh_get_refs
[function]
[call site]
01547
hts_log
[function]
[call site]
01548
__isoc99_sscanf
[call site]
01549
hts_log
[function]
[call site]
01550
hts_log
[function]
[call site]
01551
__errno_location
[call site]
01552
cram_init_tables
[function]
[call site]
01553
__errno_location
[call site]
01554
__errno_location
[call site]
01555
hts_tpool_init
[function]
[call site]
01556
hts_malloc_p
[function]
[call site]
01557
hts_malloc_p
[function]
[call site]
01558
pthread_mutexattr_init
[call site]
01559
pthread_mutexattr_settype
[call site]
01560
pthread_mutex_init
[call site]
01561
pthread_mutexattr_destroy
[call site]
01562
pthread_mutex_lock
[call site]
01563
pthread_attr_init
[call site]
01564
pthread_attr_getstacksize
[call site]
01565
pthread_attr_setstacksize
[call site]
01566
pthread_cond_init
[call site]
01567
pthread_create
[call site]
01568
tpool_worker
[function]
[call site]
01569
pthread_mutex_lock
[call site]
01570
__assert_fail
[call site]
01571
pthread_cond_wait
[call site]
01572
__assert_fail
[call site]
01573
pthread_cond_broadcast
[call site]
01574
pthread_cond_signal
[call site]
01575
pthread_mutex_unlock
[call site]
01576
hts_tpool_add_result
[function]
[call site]
01577
pthread_mutex_lock
[call site]
01578
pthread_cond_signal
[call site]
01579
pthread_mutex_unlock
[call site]
01580
pthread_mutex_unlock
[call site]
01581
hts_tpool_process_shutdown
[function]
[call site]
01582
pthread_mutex_lock
[call site]
01583
hts_tpool_process_shutdown_locked
[function]
[call site]
01584
pthread_mutex_unlock
[call site]
01585
__assert_fail
[call site]
01586
pthread_cond_broadcast
[call site]
01587
pthread_mutex_unlock
[call site]
01588
pthread_mutex_lock
[call site]
01589
hts_tpool_process_destroy
[function]
[call site]
01590
pthread_mutex_unlock
[call site]
01591
pthread_mutex_lock
[call site]
01592
hts_tpool_process_shutdown_locked
[function]
[call site]
01593
pthread_mutex_unlock
[call site]
01594
pthread_mutex_unlock
[call site]
01595
pthread_attr_destroy
[call site]
01596
__errno_location
[call site]
01597
__errno_location
[call site]
01598
strerror
[call site]
01599
pthread_mutex_unlock
[call site]
01600
pthread_join
[call site]
01601
pthread_cond_destroy
[call site]
01602
pthread_mutex_destroy
[call site]
01603
pthread_attr_destroy
[call site]
01604
__errno_location
[call site]
01605
hts_tpool_process_init
[function]
[call site]
01606
pthread_cond_init
[call site]
01607
pthread_cond_init
[call site]
01608
pthread_cond_init
[call site]
01609
pthread_cond_init
[call site]
01610
hts_tpool_process_attach
[function]
[call site]
01611
pthread_mutex_lock
[call site]
01612
__assert_fail
[call site]
01613
pthread_mutex_unlock
[call site]
01614
hts_tpool_size
[function]
[call site]
01615
hts_tpool_process_init
[function]
[call site]
01616
__errno_location
[call site]
01617
__errno_location
[call site]
01618
__errno_location
[call site]
01619
__errno_location
[call site]
01620
__errno_location
[call site]
01621
hts_log
[function]
[call site]
01622
__errno_location
[call site]
01623
bgzf_hopen
[function]
[call site]
01624
__errno_location
[call site]
01625
hts_process_opts
[function]
[call site]
01626
hts_parse_opt_list
[function]
[call site]
01627
strncpy
[call site]
01628
hts_opt_add
[function]
[call site]
01629
strdup
[call site]
01630
strchr
[call site]
01631
strcmp
[call site]
01632
strcmp
[call site]
01633
get_int
[function]
[call site]
01634
get_int_kmg
[function]
[call site]
01635
strtol
[call site]
01636
hts_log
[function]
[call site]
01637
hts_log
[function]
[call site]
01638
hts_log
[function]
[call site]
01639
strcmp
[call site]
01640
strcmp
[call site]
01641
get_int
[function]
[call site]
01642
strcmp
[call site]
01643
get_int
[function]
[call site]
01644
strcmp
[call site]
01645
strcmp
[call site]
01646
get_int
[function]
[call site]
01647
strcmp
[call site]
01648
strcmp
[call site]
01649
get_int
[function]
[call site]
01650
strcmp
[call site]
01651
strcmp
[call site]
01652
get_int
[function]
[call site]
01653
strcmp
[call site]
01654
strcmp
[call site]
01655
get_int
[function]
[call site]
01656
strcmp
[call site]
01657
strcmp
[call site]
01658
get_int
[function]
[call site]
01659
strcmp
[call site]
01660
strcmp
[call site]
01661
get_int
[function]
[call site]
01662
strcmp
[call site]
01663
strcmp
[call site]
01664
get_int
[function]
[call site]
01665
strcmp
[call site]
01666
strcmp
[call site]
01667
get_int
[function]
[call site]
01668
strcmp
[call site]
01669
strcmp
[call site]
01670
get_int
[function]
[call site]
01671
strcmp
[call site]
01672
strcmp
[call site]
01673
get_int
[function]
[call site]
01674
strcmp
[call site]
01675
strcmp
[call site]
01676
get_int
[function]
[call site]
01677
strcmp
[call site]
01678
strcmp
[call site]
01679
get_int
[function]
[call site]
01680
strcmp
[call site]
01681
strcmp
[call site]
01682
strcmp
[call site]
01683
strcmp
[call site]
01684
strcmp
[call site]
01685
strcmp
[call site]
01686
strcmp
[call site]
01687
strcmp
[call site]
01688
strcmp
[call site]
01689
strcmp
[call site]
01690
strcmp
[call site]
01691
strcmp
[call site]
01692
strcmp
[call site]
01693
strcmp
[call site]
01694
atoi
[call site]
01695
get_int
[function]
[call site]
01696
strcmp
[call site]
01697
strcmp
[call site]
01698
get_int
[function]
[call site]
01699
strcmp
[call site]
01700
strcmp
[call site]
01701
get_int_kmg
[function]
[call site]
01702
strcmp
[call site]
01703
strcmp
[call site]
01704
get_int
[function]
[call site]
01705
strcmp
[call site]
01706
strcmp
[call site]
01707
get_int
[function]
[call site]
01708
strcmp
[call site]
01709
strcmp
[call site]
01710
strcmp
[call site]
01711
strcmp
[call site]
01712
get_int
[function]
[call site]
01713
strcmp
[call site]
01714
strcmp
[call site]
01715
get_int
[function]
[call site]
01716
strcmp
[call site]
01717
strcmp
[call site]
01718
get_int_kmg
[function]
[call site]
01719
strcmp
[call site]
01720
strcmp
[call site]
01721
get_int
[function]
[call site]
01722
strcmp
[call site]
01723
strcmp
[call site]
01724
strcmp
[call site]
01725
strcmp
[call site]
01726
strcmp
[call site]
01727
strcmp
[call site]
01728
strcmp
[call site]
01729
strcmp
[call site]
01730
strcmp
[call site]
01731
strcmp
[call site]
01732
strcmp
[call site]
01733
strcmp
[call site]
01734
strcmp
[call site]
01735
strcmp
[call site]
01736
strcmp
[call site]
01737
strcmp
[call site]
01738
strcmp
[call site]
01739
strcmp
[call site]
01740
get_int
[function]
[call site]
01741
hts_log
[function]
[call site]
01742
hts_opt_apply
[function]
[call site]
01743
strdup
[call site]
01744
hts_set_opt
[function]
[call site]
01745
hts_set_threads
[function]
[call site]
01746
sam_set_threads
[function]
[call site]
01747
hts_tpool_init
[function]
[call site]
01748
sam_set_thread_pool
[function]
[call site]
01749
sam_state_create
[function]
[call site]
01750
calloc
[call site]
01751
pthread_mutex_init
[call site]
01752
pthread_mutex_init
[call site]
01753
pthread_cond_init
[call site]
01754
hts_tpool_size
[function]
[call site]
01755
hts_tpool_process_init
[function]
[call site]
01756
sam_state_destroy
[function]
[call site]
01757
pthread_mutex_lock
[call site]
01758
pthread_cond_signal
[call site]
01759
hts_tpool_wake_dispatch
[function]
[call site]
01760
hts_tpool_wake_dispatch
[function]
[call site]
01761
pthread_mutex_unlock
[call site]
01762
hts_usleep
[function]
[call site]
01763
pthread_mutex_lock
[call site]
01764
pthread_mutex_unlock
[call site]
01765
hts_tpool_dispatch
[function]
[call site]
01766
hts_tpool_dispatch3
[function]
[call site]
01767
sam_format_worker
[function]
[call site]
01768
pthread_mutex_lock
[call site]
01769
pthread_mutex_unlock
[call site]
01770
calloc
[call site]
01771
sam_state_err
[function]
[call site]
01772
pthread_mutex_lock
[call site]
01773
pthread_mutex_unlock
[call site]
01774
sam_format1_append
[function]
[call site]
01775
kputsn_
[function]
[call site]
01776
__errno_location
[call site]
01777
ks_resize
[function]
[call site]
01778
kputc_
[function]
[call site]
01779
kputw
[function]
[call site]
01780
ks_resize
[function]
[call site]
01781
kputuw
[function]
[call site]
01782
ks_resize
[function]
[call site]
01783
ks_resize
[function]
[call site]
01784
kputc_
[function]
[call site]
01785
kputs
[function]
[call site]
01786
kputc_
[function]
[call site]
01787
kputsn_
[function]
[call site]
01788
kputll
[function]
[call site]
01789
ks_resize
[function]
[call site]
01790
kputuw
[function]
[call site]
01791
kputc_
[function]
[call site]
01792
kputw
[function]
[call site]
01793
kputc_
[function]
[call site]
01794
kputw
[function]
[call site]
01795
kputc_
[function]
[call site]
01796
kputc_
[function]
[call site]
01797
kputc_
[function]
[call site]
01798
kputsn_
[function]
[call site]
01799
kputsn_
[function]
[call site]
01800
kputs
[function]
[call site]
01801
kputc_
[function]
[call site]
01802
kputll
[function]
[call site]
01803
kputc_
[function]
[call site]
01804
kputll
[function]
[call site]
01805
kputc_
[function]
[call site]
01806
ks_resize
[function]
[call site]
01807
nibble2base
[function]
[call site]
01808
add33
[function]
[call site]
01809
kputsn_
[function]
[call site]
01810
kputc_
[function]
[call site]
01811
sam_format_aux1
[function]
[call site]
01812
kputsn_
[function]
[call site]
01813
kputc_
[function]
[call site]
01814
kputsn_
[function]
[call site]
01815
kputw
[function]
[call site]
01816
kputsn_
[function]
[call site]
01817
kputw
[function]
[call site]
01818
kputsn_
[function]
[call site]
01819
le_to_u16
[function]
[call site]
01820
kputuw
[function]
[call site]
01821
kputsn_
[function]
[call site]
01822
le_to_i16
[function]
[call site]
01823
le_to_u16
[function]
[call site]
01824
kputw
[function]
[call site]
01825
kputsn_
[function]
[call site]
01826
le_to_u32
[function]
[call site]
01827
kputuw
[function]
[call site]
01828
kputsn_
[function]
[call site]
01829
le_to_i32
[function]
[call site]
01830
le_to_u32
[function]
[call site]
01831
kputw
[function]
[call site]
01832
kputsn_
[function]
[call site]
01833
kputc
[function]
[call site]
01834
le_to_float
[function]
[call site]
01835
le_to_u32
[function]
[call site]
01836
ksprintf
[function]
[call site]
01837
le_to_double
[function]
[call site]
01838
le_to_u64
[function]
[call site]
01839
ksprintf
[function]
[call site]
01840
kputc_
[function]
[call site]
01841
kputc_
[function]
[call site]
01842
kputc_
[function]
[call site]
01843
kputsn
[function]
[call site]
01844
le_to_u32
[function]
[call site]
01845
kputsn_
[function]
[call site]
01846
kputc
[function]
[call site]
01847
ks_expand
[function]
[call site]
01848
__errno_location
[call site]
01849
ks_resize
[function]
[call site]
01850
kputw
[function]
[call site]
01851
ks_expand
[function]
[call site]
01852
kputuw
[function]
[call site]
01853
ks_expand
[function]
[call site]
01854
le_to_i16
[function]
[call site]
01855
kputw
[function]
[call site]
01856
ks_expand
[function]
[call site]
01857
le_to_u16
[function]
[call site]
01858
kputuw
[function]
[call site]
01859
ks_expand
[function]
[call site]
01860
le_to_i32
[function]
[call site]
01861
kputw
[function]
[call site]
01862
ks_expand
[function]
[call site]
01863
le_to_u32
[function]
[call site]
01864
kputuw
[function]
[call site]
01865
ks_expand
[function]
[call site]
01866
le_to_float
[function]
[call site]
01867
kputd
[function]
[call site]
01868
__errno_location
[call site]
01869
hts_log
[function]
[call site]
01870
__errno_location
[call site]
01871
kputsn
[function]
[call site]
01872
hts_log
[function]
[call site]
01873
__errno_location
[call site]
01874
hts_log
[function]
[call site]
01875
__errno_location
[call site]
01876
__errno_location
[call site]
01877
sam_state_err
[function]
[call site]
01878
kputc
[function]
[call site]
01879
pthread_mutex_lock
[call site]
01880
pthread_mutex_unlock
[call site]
01881
hts_tpool_process_flush
[function]
[call site]
01882
pthread_mutex_lock
[call site]
01883
pthread_mutex_unlock
[call site]
01884
hts_tpool_process_empty
[function]
[call site]
01885
hts_usleep
[function]
[call site]
01886
pthread_mutex_lock
[call site]
01887
hts_tpool_process_is_shutdown
[function]
[call site]
01888
pthread_mutex_unlock
[call site]
01889
hts_tpool_process_shutdown
[function]
[call site]
01890
pthread_join
[call site]
01891
hts_tpool_process_destroy
[function]
[call site]
01892
hts_tpool_destroy
[function]
[call site]
01893
pthread_mutex_destroy
[call site]
01894
pthread_mutex_destroy
[call site]
01895
pthread_cond_destroy
[call site]
01896
sam_free_sp_bams
[function]
[call site]
01897
sam_free_sp_bams
[function]
[call site]
01898
bam_hdr_destroy
[function]
[call site]
01899
sam_hdr_destroy
[function]
[call site]
01900
bgzf_thread_pool
[function]
[call site]
01901
calloc
[call site]
01902
hts_tpool_size
[function]
[call site]
01903
hts_tpool_process_init
[function]
[call site]
01904
hts_tpool_process_ref_incr
[function]
[call site]
01905
pthread_mutex_lock
[call site]
01906
pthread_mutex_unlock
[call site]
01907
pool_create
[function]
[call site]
01908
pthread_mutex_init
[call site]
01909
pthread_mutex_init
[call site]
01910
pthread_mutex_init
[call site]
01911
pthread_cond_init
[call site]
01912
pthread_create
[call site]
01913
hts_tpool_destroy
[function]
[call site]
01914
hts_get_bgzfp
[function]
[call site]
01915
bgzf_mt
[function]
[call site]
01916
hts_tpool_init
[function]
[call site]
01917
bgzf_thread_pool
[function]
[call site]
01918
hts_tpool_destroy
[function]
[call site]
01919
hts_set_opt
[function]
[call site]
01920
hts_hfile
[function]
[call site]
01921
bgzf_hfile
[function]
[call site]
01922
cram_hfile
[function]
[call site]
01923
bgzf_hfile
[function]
[call site]
01924
hfile_set_blksize
[function]
[call site]
01925
hts_log
[function]
[call site]
01926
hts_log
[function]
[call site]
01927
hts_set_thread_pool
[function]
[call site]
01928
sam_set_thread_pool
[function]
[call site]
01929
hts_get_bgzfp
[function]
[call site]
01930
bgzf_thread_pool
[function]
[call site]
01931
hts_set_opt
[function]
[call site]
01932
hts_set_cache_size
[function]
[call site]
01933
hts_get_bgzfp
[function]
[call site]
01934
bgzf_set_cache_size
[function]
[call site]
01935
fastq_state_set
[function]
[call site]
01936
fastq_state_init
[function]
[call site]
01937
strcmp
[call site]
01941
kh_init_tag
[function]
[call site]
01942
calloc
[call site]
01943
strlen
[call site]
01944
hts_log
[function]
[call site]
01945
kh_put_tag
[function]
[call site]
01946
kh_resize_tag
[function]
[call site]
01947
__errno_location
[call site]
01948
realloc
[call site]
01949
strncpy
[call site]
01950
strcmp
[call site]
01951
isalpha_c
[function]
[call site]
01952
isalnum_c
[function]
[call site]
01953
strncpy
[call site]
01954
hts_log
[function]
[call site]
01955
regfree
[call site]
01956
regcomp
[call site]
01957
hts_log
[function]
[call site]
01958
fastq_state_set
[function]
[call site]
01959
fastq_state_set
[function]
[call site]
01960
cram_set_option
[function]
[call site]
01961
hts_set_filter_expression
[function]
[call site]
01962
hts_filter_free
[function]
[call site]
01963
regfree
[call site]
01964
hts_filter_init
[function]
[call site]
01965
calloc
[call site]
01966
strlen
[call site]
01967
hts_malloc_ps
[function]
[call site]
01968
hts_add_sat2
[function]
[call site]
01969
hts_prod_sat2
[function]
[call site]
01970
hts_malloc
[function]
[call site]
01971
cram_set_voption
[function]
[call site]
01972
hts_set_opt
[function]
[call site]
01973
hts_opt_free
[function]
[call site]
01974
hts_opt_free
[function]
[call site]
01975
hclose_abruptly
[function]
[call site]
01976
hts_log
[function]
[call site]
01977
hclose_abruptly
[function]
[call site]
01978
hclose
[function]
[call site]
01979
abort
[call site]
01980
hts_close
[function]
[call site]
01981
__errno_location
[call site]
01982
bgzf_close
[function]
[call site]
01983
cram_eof
[function]
[call site]
01984
hts_log
[function]
[call site]
01985
cram_close
[function]
[call site]
01986
cram_update_curr_slice
[function]
[call site]
01987
cram_flush_container_mt
[function]
[call site]
01988
pthread_mutex_lock
[call site]
01989
reset_metrics
[function]
[call site]
01990
pthread_mutex_unlock
[call site]
01991
hts_tpool_process_flush
[function]
[call site]
01992
pthread_mutex_lock
[call site]
01993
pthread_mutex_unlock
[call site]
01994
cram_flush_container
[function]
[call site]
01995
cram_encode_container
[function]
[call site]
01996
pthread_mutex_lock
[call site]
01997
hts_log
[function]
[call site]
01998
hts_log
[function]
[call site]
01999
pthread_mutex_lock
[call site]
02000
pthread_mutex_unlock
[call site]
02001
cram_get_ref
[function]
[call site]
02002
pthread_mutex_lock
[call site]
02003
hts_log
[function]
[call site]
02004
pthread_mutex_unlock
[call site]
02005
pthread_mutex_lock
[call site]
02006
hts_log
[function]
[call site]
02007
cram_populate_ref
[function]
[call site]
02008
getenv
[call site]
02009
getenv
[call site]
02010
hts_log
[function]
[call site]
02011
sam_hrecs_find_type_id
[function]
[call site]
02012
sam_hrecs_find_key
[function]
[call site]
02013
hts_log
[function]
[call site]
02014
expand_cache_path
[function]
[call site]
02015
strchr
[call site]
02016
strncpy
[call site]
02017
strlen
[call site]
02018
strcpy
[call site]
02019
strtol
[call site]
02020
strlen
[call site]
02021
strncpy
[call site]
02022
strlen
[call site]
02023
strcpy
[call site]
02024
strlen
[call site]
02025
strcpy
[call site]
02026
stat
[call site]
02027
stat
[call site]
02028
bgzf_open
[function]
[call site]
02029
string_dup
[function]
[call site]
02030
bgzf_close
[function]
[call site]
02031
open_path_mfile
[function]
[call site]
02032
getenv
[call site]
02033
tokenise_search_path
[function]
[call site]
02034
strlen
[call site]
02035
strncmp
[call site]
02036
strncmp
[call site]
02037
strncmp
[call site]
02038
strncmp
[call site]
02039
strncmp
[call site]
02040
strncmp
[call site]
02041
strncmp
[call site]
02042
strncmp
[call site]
02043
strncmp
[call site]
02044
strncmp
[call site]
02045
find_file_url
[function]
[call site]
02046
expand_path
[function]
[call site]
02047
strlen
[call site]
02048
strlen
[call site]
02049
hts_log
[function]
[call site]
02050
strchr
[call site]
02051
strtol
[call site]
02052
hopen
[function]
[call site]
02053
__errno_location
[call site]
02054
__errno_location
[call site]
02055
strerror
[call site]
02056
hts_log
[function]
[call site]
02057
mfcreate
[function]
[call site]
02058
hread
[function]
[call site]
02059
mfwrite
[function]
[call site]
02060
realloc
[call site]
02061
hclose_abruptly
[function]
[call site]
02062
hclose
[function]
[call site]
02063
__errno_location
[call site]
02064
strerror
[call site]
02065
hts_log
[function]
[call site]
02066
mrewind
[function]
[call site]
02067
mfdestroy
[function]
[call site]
02068
strncmp
[call site]
02069
hisremote
[function]
[call site]
02070
find_file_url
[function]
[call site]
02071
find_file_dir
[function]
[call site]
02072
expand_path
[function]
[call site]
02073
is_file
[function]
[call site]
02074
stat
[call site]
02075
mfopen
[function]
[call site]
02076
fopen
[call site]
02077
mfreopen
[function]
[call site]
02078
strchr
[call site]
02079
strchr
[call site]
02080
strchr
[call site]
02081
strchr
[call site]
02082
strchr
[call site]
02083
strchr
[call site]
02084
strchr
[call site]
02085
mfcreate
[function]
[call site]
02086
mfmmap
[function]
[call site]
02087
mfload
[function]
[call site]
02091
stat
[call site]
02092
realloc
[call site]
02093
fread
[call site]
02094
feof
[call site]
02095
fseek
[call site]
02096
mfcreate
[function]
[call site]
02097
hts_log
[function]
[call site]
02098
fseek
[call site]
02099
strlen
[call site]
02100
strcpy
[call site]
02101
strrchr
[call site]
02102
find_file_dir
[function]
[call site]
02103
mfsteal
[function]
[call site]
02104
mfdetach
[function]
[call site]
02105
mfflush
[function]
[call site]
02106
fclose
[call site]
02107
mfdestroy
[function]
[call site]
02108
sam_hrecs_find_key
[function]
[call site]
02109
strstr
[call site]
02110
strncmp
[call site]
02111
hts_log
[function]
[call site]
02112
strncmp
[call site]
02113
bgzf_close
[function]
[call site]
02114
refs_load_fai
[function]
[call site]
02115
sanitise_SQ_lines
[function]
[call site]
02116
bgzf_close
[function]
[call site]
02117
refs2id
[function]
[call site]
02118
expand_cache_path
[function]
[call site]
02119
hts_log
[function]
[call site]
02120
mkdir_prefix
[function]
[call site]
02121
strrchr
[call site]
02122
is_directory
[function]
[call site]
02123
stat
[call site]
02124
mkdir
[call site]
02125
chmod
[call site]
02126
mkdir_prefix
[function]
[call site]
02127
mkdir
[call site]
02128
chmod
[call site]
02129
hts_open_tmpfile
[function]
[call site]
02130
getpid
[call site]
02131
time
[call site]
02132
clock
[call site]
02133
ks_clear
[function]
[call site]
02134
ksprintf
[function]
[call site]
02135
hopen
[function]
[call site]
02136
__errno_location
[call site]
02137
perror
[call site]
02138
hts_md5_init
[function]
[call site]
02139
hts_md5_reset
[function]
[call site]
02140
hclose_abruptly
[function]
[call site]
02141
unlink
[call site]
02142
hts_md5_update
[function]
[call site]
02143
body
[function]
[call site]
02144
body
[function]
[call site]
02145
hts_md5_final
[function]
[call site]
02146
body
[function]
[call site]
02147
body
[function]
[call site]
02148
hts_md5_destroy
[function]
[call site]
02149
hts_md5_hex
[function]
[call site]
02150
strncmp
[call site]
02151
hts_log
[function]
[call site]
02152
hclose_abruptly
[function]
[call site]
02153
unlink
[call site]
02154
hwrite
[function]
[call site]
02155
hclose
[function]
[call site]
02156
chmod
[call site]
02157
rename
[call site]
02158
__errno_location
[call site]
02159
strerror
[call site]
02160
hts_log
[function]
[call site]
02161
unlink
[call site]
02162
hts_log
[function]
[call site]
02163
hts_log
[function]
[call site]
02164
pthread_mutex_unlock
[call site]
02165
pthread_mutex_unlock
[call site]
02166
cram_ref_incr_locked
[function]
[call site]
02167
cram_ref_incr_locked
[function]
[call site]
02168
cram_ref_load
[function]
[call site]
02169
__assert_fail
[call site]
02170
__assert_fail
[call site]
02171
ref_entry_free_seq
[function]
[call site]
02172
strcmp
[call site]
02173
bgzf_close
[function]
[call site]
02174
bgzf_open_ref
[function]
[call site]
02175
load_ref_portion
[function]
[call site]
02176
bgzf_useek
[function]
[call site]
02177
hseek
[function]
[call site]
02178
bgzf_read_block
[function]
[call site]
02179
bgzf_seek_common
[function]
[call site]
02180
pthread_mutex_lock
[call site]
02181
pthread_cond_signal
[call site]
02182
hts_tpool_wake_dispatch
[function]
[call site]
02183
pthread_cond_wait
[call site]
02184
pthread_cond_signal
[call site]
02185
abort
[call site]
02186
__errno_location
[call site]
02187
pthread_mutex_unlock
[call site]
02188
pthread_mutex_unlock
[call site]
02189
hseek
[function]
[call site]
02190
bgzf_read_block
[function]
[call site]
02191
__assert_fail
[call site]
02192
perror
[call site]
02193
bgzf_read
[function]
[call site]
02194
__assert_fail
[call site]
02195
bgzf_read_block
[function]
[call site]
02196
hts_log
[function]
[call site]
02197
bgzf_htell
[function]
[call site]
02198
hts_log
[function]
[call site]
02199
bgzf_htell
[function]
[call site]
02200
perror
[call site]
02201
isspace_c
[function]
[call site]
02202
isspace_c
[function]
[call site]
02203
isspace_c
[function]
[call site]
02204
hts_log
[function]
[call site]
02205
toupper_c
[function]
[call site]
02206
toupper
[call site]
02207
pthread_mutex_unlock
[call site]
02208
pthread_mutex_unlock
[call site]
02209
cram_ref_incr_locked
[function]
[call site]
02210
pthread_mutex_unlock
[call site]
02211
pthread_mutex_unlock
[call site]
02212
pthread_mutex_unlock
[call site]
02213
pthread_mutex_unlock
[call site]
02214
strcmp
[call site]
02215
bgzf_close
[function]
[call site]
02216
bgzf_open_ref
[function]
[call site]
02217
pthread_mutex_unlock
[call site]
02218
pthread_mutex_unlock
[call site]
02219
load_ref_portion
[function]
[call site]
02220
pthread_mutex_unlock
[call site]
02221
pthread_mutex_unlock
[call site]
02222
pthread_mutex_unlock
[call site]
02223
pthread_mutex_unlock
[call site]
02224
hts_log
[function]
[call site]
02225
hts_log
[function]
[call site]
02226
pthread_mutex_lock
[call site]
02227
pthread_mutex_unlock
[call site]
02228
hts_log
[function]
[call site]
02229
hts_log
[function]
[call site]
02230
hts_log
[function]
[call site]
02231
hts_log
[function]
[call site]
02232
pthread_mutex_lock
[call site]
02233
pthread_mutex_unlock
[call site]
02234
validate_md5
[function]
[call site]
02235
sam_hrecs_find_type_id
[function]
[call site]
02236
sam_hrecs_find_key
[function]
[call site]
02237
hts_md5_init
[function]
[call site]
02238
hts_md5_update
[function]
[call site]
02239
hts_md5_final
[function]
[call site]
02240
hts_md5_destroy
[function]
[call site]
02241
hts_md5_hex
[function]
[call site]
02242
strcmp
[call site]
02243
hts_log
[function]
[call site]
02244
hts_log
[function]
[call site]
02245
cram_ref_incr
[function]
[call site]
02246
pthread_mutex_lock
[call site]
02247
cram_ref_incr_locked
[function]
[call site]
02248
pthread_mutex_unlock
[call site]
02249
cram_get_ref
[function]
[call site]
02250
validate_md5
[function]
[call site]
02251
hts_log
[function]
[call site]
02252
__assert_fail
[call site]
02253
lossy_read_names
[function]
[call site]
02254
kh_init_m_s2u64
[function]
[call site]
02255
calloc
[call site]
02256
expected_template_count
[function]
[call site]
02257
bam_aux_get
[function]
[call site]
02258
bam_aux_first
[function]
[call site]
02259
__errno_location
[call site]
02260
skip_aux
[function]
[call site]
02261
aux_type2size
[function]
[call site]
02262
memchr
[call site]
02263
aux_type2size
[function]
[call site]
02264
le_to_u32
[function]
[call site]
02265
hts_log
[function]
[call site]
02266
__errno_location
[call site]
02267
skip_aux
[function]
[call site]
02268
bam_aux_next
[function]
[call site]
02269
skip_aux
[function]
[call site]
02270
__errno_location
[call site]
02271
skip_aux
[function]
[call site]
02272
hts_log
[function]
[call site]
02273
__errno_location
[call site]
02274
hts_log
[function]
[call site]
02275
__errno_location
[call site]
02276
bam_data_end
[function]
[call site]
02277
bam_aux2i_end
[function]
[call site]
02278
__errno_location
[call site]
02279
__errno_location
[call site]
02280
__errno_location
[call site]
02281
le_to_i16
[function]
[call site]
02282
le_to_u16
[function]
[call site]
02283
__errno_location
[call site]
02284
le_to_u16
[function]
[call site]
02285
__errno_location
[call site]
02286
le_to_i32
[function]
[call site]
02287
le_to_u32
[function]
[call site]
02288
__errno_location
[call site]
02289
le_to_u32
[function]
[call site]
02290
__errno_location
[call site]
02291
bam_aux_get
[function]
[call site]
02292
kh_put_m_s2u64
[function]
[call site]
02293
kh_resize_m_s2u64
[function]
[call site]
02294
__errno_location
[call site]
02295
realloc
[call site]
02296
__ac_FNV1a_hash_string
[function]
[call site]
02297
strcmp
[call site]
02298
kh_get_m_s2u64
[function]
[call site]
02299
kh_destroy_m_s2u64
[function]
[call site]
02300
cram_generate_reference
[function]
[call site]
02301
extend_ref
[function]
[call site]
02302
realloc
[call site]
02303
hts_realloc_p
[function]
[call site]
02304
hts_log
[function]
[call site]
02305
cram_add_to_ref
[function]
[call site]
02306
bam_aux_get
[function]
[call site]
02307
cram_add_to_ref_MD
[function]
[call site]
02308
bam_cigar2rlen
[function]
[call site]
02309
extend_ref
[function]
[call site]
02310
__ctype_b_loc
[call site]
02311
hts_str2uint
[function]
[call site]
02312
extend_ref
[function]
[call site]
02313
next_cigar_op
[function]
[call site]
02314
hts_log
[function]
[call site]
02315
__ctype_b_loc
[call site]
02316
extend_ref
[function]
[call site]
02317
next_cigar_op
[function]
[call site]
02318
hts_log
[function]
[call site]
02319
extend_ref
[function]
[call site]
02320
next_cigar_op
[function]
[call site]
02321
hts_log
[function]
[call site]
02322
extend_ref
[function]
[call site]
02323
extend_ref
[function]
[call site]
02324
hts_log
[function]
[call site]
02325
hts_log
[function]
[call site]
02326
pthread_mutex_lock
[call site]
02327
pthread_mutex_unlock
[call site]
02328
pthread_mutex_lock
[call site]
02329
pthread_mutex_unlock
[call site]
02330
cram_ref_decr
[function]
[call site]
02331
pthread_mutex_lock
[call site]
02332
cram_ref_decr_locked
[function]
[call site]
02333
__assert_fail
[call site]
02334
ref_entry_free_seq
[function]
[call site]
02335
pthread_mutex_unlock
[call site]
02336
cram_get_ref
[function]
[call site]
02337
hts_log
[function]
[call site]
02338
validate_md5
[function]
[call site]
02339
process_one_read
[function]
[call site]
02340
bam_aux_get
[function]
[call site]
02341
bam_aux_get
[function]
[call site]
02342
cram_stats_add
[function]
[call site]
02343
kh_init_m_i2i
[function]
[call site]
02344
kh_put_m_i2i
[function]
[call site]
02345
kh_resize_m_i2i
[function]
[call site]
02346
cram_stats_add
[function]
[call site]
02347
cram_stats_add
[function]
[call site]
02348
block_grow
[function]
[call site]
02349
block_resize
[function]
[call site]
02350
block_resize_exact
[function]
[call site]
02351
realloc
[call site]
02352
block_grow
[function]
[call site]
02353
nibble2base
[function]
[call site]
02354
hts_log
[function]
[call site]
02355
hts_realloc_p
[function]
[call site]
02356
hts_log
[function]
[call site]
02357
kputuw
[function]
[call site]
02358
ks_resize
[function]
[call site]
02359
ks_resize
[function]
[call site]
02360
kputc
[function]
[call site]
02361
ks_resize
[function]
[call site]
02362
cram_add_substitution
[function]
[call site]
02363
cram_stats_add
[function]
[call site]
02364
cram_stats_add
[function]
[call site]
02365
cram_stats_add
[function]
[call site]
02366
block_append_char
[function]
[call site]
02367
block_grow
[function]
[call site]
02368
cram_add_feature
[function]
[call site]
02369
hts_realloc_p
[function]
[call site]
02370
cram_stats_add
[function]
[call site]
02371
cram_stats_add
[function]
[call site]
02372
cram_stats_add
[function]
[call site]
02373
cram_add_bases
[function]
[call site]
02374
cram_add_feature
[function]
[call site]
02375
cram_add_base
[function]
[call site]
02376
cram_stats_add
[function]
[call site]
02377
cram_stats_add
[function]
[call site]
02378
block_append_char
[function]
[call site]
02379
cram_add_feature
[function]
[call site]
02380
cram_add_base
[function]
[call site]
02381
kputuw
[function]
[call site]
02382
kputc_
[function]
[call site]
02383
ks_resize
[function]
[call site]
02384
kputsn
[function]
[call site]
02385
ks_resize
[function]
[call site]
02386
cram_add_deletion
[function]
[call site]
02387
cram_stats_add
[function]
[call site]
02388
cram_add_feature
[function]
[call site]
02389
cram_add_skip
[function]
[call site]
02390
cram_stats_add
[function]
[call site]
02391
cram_add_feature
[function]
[call site]
02392
cram_add_insertion
[function]
[call site]
02393
cram_stats_add
[function]
[call site]
02394
block_append
[function]
[call site]
02395
block_grow
[function]
[call site]
02396
block_append_repeat_char
[function]
[call site]
02397
block_grow
[function]
[call site]
02398
block_append_char
[function]
[call site]
02399
cram_add_feature
[function]
[call site]
02400
cram_add_quality
[function]
[call site]
02401
cram_stats_add
[function]
[call site]
02402
block_append_char
[function]
[call site]
02403
cram_add_feature
[function]
[call site]
02404
cram_add_softclip
[function]
[call site]
02405
block_append
[function]
[call site]
02406
block_append_char
[function]
[call site]
02407
block_append
[function]
[call site]
02408
block_append_repeat_char
[function]
[call site]
02409
block_append_char
[function]
[call site]
02410
cram_add_feature
[function]
[call site]
02411
cram_add_quality
[function]
[call site]
02412
cram_add_quality
[function]
[call site]
02413
cram_add_hardclip
[function]
[call site]
02414
cram_stats_add
[function]
[call site]
02415
cram_add_feature
[function]
[call site]
02416
cram_add_pad
[function]
[call site]
02417
cram_stats_add
[function]
[call site]
02418
cram_add_feature
[function]
[call site]
02419
hts_log
[function]
[call site]
02420
hts_log
[function]
[call site]
02421
cram_stats_add
[function]
[call site]
02422
kputuw
[function]
[call site]
02423
cram_stats_add
[function]
[call site]
02424
cram_encode_aux
[function]
[call site]
02425
bam_data_end
[function]
[call site]
02426
hts_malloc_ps
[function]
[call site]
02427
hts_add_sat2
[function]
[call site]
02428
hts_prod_sat2
[function]
[call site]
02429
hts_malloc
[function]
[call site]
02430
hts_log
[function]
[call site]
02431
sam_hrecs_find_rg
[function]
[call site]
02432
kh_get_m_s2i
[function]
[call site]
02433
hts_log
[function]
[call site]
02434
strncasecmp
[call site]
02435
hts_log
[function]
[call site]
02436
bam_aux2i_end
[function]
[call site]
02437
hts_log
[function]
[call site]
02438
block_append
[function]
[call site]
02439
kh_put_m_tagmap
[function]
[call site]
02440
kh_resize_m_tagmap
[function]
[call site]
02441
realloc
[call site]
02442
pthread_mutex_lock
[call site]
02443
kh_put_m_metrics
[function]
[call site]
02444
kh_resize_m_metrics
[function]
[call site]
02445
realloc
[call site]
02446
pthread_mutex_unlock
[call site]
02447
cram_new_metrics
[function]
[call site]
02448
kh_del_m_metrics
[function]
[call site]
02449
pthread_mutex_unlock
[call site]
02450
pthread_mutex_unlock
[call site]
02451
calloc
[call site]
02452
cram_encoder_init
[function]
[call site]
02453
cram_encoding2str
[function]
[call site]
02454
hts_log
[function]
[call site]
02455
cram_encoding2str
[function]
[call site]
02456
hts_log
[function]
[call site]
02457
abort
[call site]
02458
cram_stats_add
[function]
[call site]
02459
cram_stats_encoding
[function]
[call site]
02460
hts_realloc_p
[function]
[call site]
02461
hts_realloc_p
[function]
[call site]
02462
hts_realloc_p
[function]
[call site]
02463
hts_realloc_p
[function]
[call site]
02464
__assert_fail
[call site]
02465
cram_encoder_init
[function]
[call site]
02466
cram_stats_add
[function]
[call site]
02467
cram_stats_encoding
[function]
[call site]
02468
cram_encoder_init
[function]
[call site]
02469
cram_stats_add
[function]
[call site]
02470
cram_stats_encoding
[function]
[call site]
02471
cram_encoder_init
[function]
[call site]
02472
cram_encoder_init
[function]
[call site]
02473
hts_log
[function]
[call site]
02474
pthread_mutex_lock
[call site]
02475
pthread_mutex_unlock
[call site]
02476
cram_new_block
[function]
[call site]
02477
block_append_char
[function]
[call site]
02478
cram_new_block
[function]
[call site]
02479
block_append
[function]
[call site]
02480
cram_new_block
[function]
[call site]
02481
block_append
[function]
[call site]
02482
cram_new_block
[function]
[call site]
02483
block_append
[function]
[call site]
02484
cram_new_block
[function]
[call site]
02485
hts_log
[function]
[call site]
02486
cram_new_block
[function]
[call site]
02487
hts_log
[function]
[call site]
02488
hts_log
[function]
[call site]
02489
block_append_char
[function]
[call site]
02490
kh_put_m_s2i
[function]
[call site]
02491
kh_resize_m_s2i
[function]
[call site]
02492
__ac_FNV1a_hash_string
[function]
[call site]
02493
string_ndup
[function]
[call site]
02494
cram_stats_add
[function]
[call site]
02495
sam_hrecs_find_rg
[function]
[call site]
02496
cram_stats_add
[function]
[call site]
02497
block_grow
[function]
[call site]
02498
block_grow
[function]
[call site]
02499
cram_stats_add
[function]
[call site]
02500
kh_put_m_s2i
[function]
[call site]
02501
string_ndup
[function]
[call site]
02502
cram_stats_add
[function]
[call site]
02503
cram_stats_add
[function]
[call site]
02504
cram_stats_del
[function]
[call site]
02505
__assert_fail
[call site]
02506
kh_get_m_i2i
[function]
[call site]
02507
kh_del_m_i2i
[function]
[call site]
02508
hts_log
[function]
[call site]
02509
cram_stats_del
[function]
[call site]
02510
cram_stats_del
[function]
[call site]
02511
cram_stats_del
[function]
[call site]
02512
cram_stats_add
[function]
[call site]
02513
cram_stats_del
[function]
[call site]
02514
cram_stats_add
[function]
[call site]
02515
cram_stats_add
[function]
[call site]
02516
cram_stats_add
[function]
[call site]
02517
cram_stats_add
[function]
[call site]
02518
cram_stats_add
[function]
[call site]
02519
cram_stats_add
[function]
[call site]
02520
cram_stats_add
[function]
[call site]
02521
cram_stats_add
[function]
[call site]
02522
add_read_names
[function]
[call site]
02523
block_append
[function]
[call site]
02524
cram_stats_add
[function]
[call site]
02525
hts_prod_sat2
[function]
[call site]
02526
hts_calloc
[function]
[call site]
02527
__assert_fail
[call site]
02528
cram_ref_decr
[function]
[call site]
02529
pthread_mutex_lock
[call site]
02530
pthread_mutex_unlock
[call site]
02531
cram_stats_encoding
[function]
[call site]
02532
pthread_mutex_lock
[call site]
02533
pthread_mutex_unlock
[call site]
02534
hts_log
[function]
[call site]
02535
hts_md5_init
[function]
[call site]
02536
hts_md5_update
[function]
[call site]
02537
hts_md5_final
[function]
[call site]
02538
hts_md5_destroy
[function]
[call site]
02539
cram_stats_encoding
[function]
[call site]
02540
cram_encoder_init
[function]
[call site]
02541
cram_stats_encoding
[function]
[call site]
02542
cram_encoder_init
[function]
[call site]
02543
cram_stats_encoding
[function]
[call site]
02544
cram_encoder_init
[function]
[call site]
02545
cram_encoder_init
[function]
[call site]
02546
cram_encoder_init
[function]
[call site]
02547
cram_stats_encoding
[function]
[call site]
02548
cram_encoder_init
[function]
[call site]
02549
cram_stats_encoding
[function]
[call site]
02550
cram_encoder_init
[function]
[call site]
02551
cram_stats_encoding
[function]
[call site]
02552
cram_encoder_init
[function]
[call site]
02553
cram_stats_encoding
[function]
[call site]
02554
cram_encoder_init
[function]
[call site]
02555
cram_stats_encoding
[function]
[call site]
02556
cram_encoder_init
[function]
[call site]
02557
cram_stats_encoding
[function]
[call site]
02558
cram_encoder_init
[function]
[call site]
02559
cram_stats_encoding
[function]
[call site]
02560
cram_encoder_init
[function]
[call site]
02561
cram_stats_encoding
[function]
[call site]
02562
cram_encoder_init
[function]
[call site]
02563
cram_stats_encoding
[function]
[call site]
02564
cram_encoder_init
[function]
[call site]
02565
cram_stats_encoding
[function]
[call site]
02566
cram_encoder_init
[function]
[call site]
02567
cram_stats_encoding
[function]
[call site]
02568
cram_encoder_init
[function]
[call site]
02569
cram_stats_encoding
[function]
[call site]
02570
cram_encoder_init
[function]
[call site]
02571
cram_stats_encoding
[function]
[call site]
02572
cram_encoder_init
[function]
[call site]
02573
cram_encoder_init
[function]
[call site]
02574
cram_stats_encoding
[function]
[call site]
02575
cram_encoder_init
[function]
[call site]
02576
cram_stats_encoding
[function]
[call site]
02577
cram_encoder_init
[function]
[call site]
02578
cram_stats_encoding
[function]
[call site]
02579
cram_encoder_init
[function]
[call site]
02580
cram_stats_encoding
[function]
[call site]
02581
cram_encoder_init
[function]
[call site]
02582
cram_stats_encoding
[function]
[call site]
02583
cram_encoder_init
[function]
[call site]
02584
cram_stats_encoding
[function]
[call site]
02585
cram_encoder_init
[function]
[call site]
02586
cram_stats_encoding
[function]
[call site]
02587
cram_encoder_init
[function]
[call site]
02588
cram_stats_encoding
[function]
[call site]
02589
cram_encoder_init
[function]
[call site]
02590
cram_encoder_init
[function]
[call site]
02591
cram_encoder_init
[function]
[call site]
02592
cram_encoder_init
[function]
[call site]
02593
cram_encoder_init
[function]
[call site]
02594
hts_log
[function]
[call site]
02595
cram_encode_slice
[function]
[call site]
02596
hts_prod_sat2
[function]
[call site]
02597
hts_calloc_ps
[function]
[call site]
02598
hts_add_sat2
[function]
[call site]
02599
hts_calloc
[function]
[call site]
02600
hts_malloc_p
[function]
[call site]
02601
cram_new_block
[function]
[call site]
02602
cram_new_block
[function]
[call site]
02603
cram_new_block
[function]
[call site]
02604
block_append
[function]
[call site]
02605
cram_allocate_block
[function]
[call site]
02606
cram_new_block
[function]
[call site]
02607
cram_new_block
[function]
[call site]
02608
cram_allocate_block
[function]
[call site]
02609
cram_allocate_block
[function]
[call site]
02610
cram_encode_slice_read
[function]
[call site]
02611
hts_log
[function]
[call site]
02612
cram_free_block
[function]
[call site]
02613
cram_free_block
[function]
[call site]
02614
cram_free_block
[function]
[call site]
02615
cram_free_block
[function]
[call site]
02616
cram_compress_slice
[function]
[call site]
02617
cram_compress_block2
[function]
[call site]
02618
cram_compress_block3
[function]
[call site]
02619
pthread_mutex_lock
[call site]
02620
pthread_mutex_unlock
[call site]
02621
cram_compress_by_method
[function]
[call site]
02622
zlib_mem_deflate
[function]
[call site]
02623
deflateInit2_
[call site]
02624
hts_log
[function]
[call site]
02625
hts_log
[function]
[call site]
02626
deflate
[call site]
02627
hts_log
[function]
[call site]
02628
deflate
[call site]
02629
hts_log
[function]
[call site]
02630
deflateEnd
[call site]
02631
hts_log
[function]
[call site]
02632
BZ2_bzBuffToBuffCompress
[call site]
02633
fqz_compress
[function]
[call site]
02634
compress_block_fqz2f
[function]
[call site]
02635
fqz_pick_parameters
[function]
[call site]
02636
calloc
[call site]
02637
fqz_qual_stats
[function]
[call site]
02638
calloc
[call site]
02639
memcmp
[call site]
02640
fast_log
[function]
[call site]
02641
fast_log
[function]
[call site]
02642
fast_log
[function]
[call site]
02643
fast_log
[function]
[call site]
02644
fast_log
[function]
[call site]
02645
fast_log
[function]
[call site]
02646
fast_log
[function]
[call site]
02647
log
[call site]
02648
log
[call site]
02649
log
[call site]
02650
log
[call site]
02651
log
[call site]
02652
log
[call site]
02653
log
[call site]
02654
log
[call site]
02655
log
[call site]
02656
var_put_u32
[function]
[call site]
02657
var_put_u32_safe
[function]
[call site]
02658
fqz_store_parameters
[function]
[call site]
02659
store_array
[function]
[call site]
02660
fqz_store_parameters1
[function]
[call site]
02661
store_array
[function]
[call site]
02662
store_array
[function]
[call site]
02663
store_array
[function]
[call site]
02664
fqz_create_models
[function]
[call site]
02665
RC_SetOutput
[function]
[call site]
02666
RC_SetOutputEnd
[function]
[call site]
02667
RC_StartEncode
[function]
[call site]
02668
compress_new_read
[function]
[call site]
02669
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02670
RC_Encode
[function]
[call site]
02671
RC_ShiftLowCheck
[function]
[call site]
02672
SIMPLE_MODEL256_normalize
[function]
[call site]
02673
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02674
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02675
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02676
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02677
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02678
SIMPLE_MODEL2_normalize
[function]
[call site]
02679
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02680
memcmp
[call site]
02681
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02682
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02683
mm_prefetch
[function]
[call site]
02684
fqz_update_ctx
[function]
[call site]
02685
mm_prefetch
[function]
[call site]
02686
fqz_update_ctx
[function]
[call site]
02687
mm_prefetch
[function]
[call site]
02688
fqz_update_ctx
[function]
[call site]
02689
mm_prefetch
[function]
[call site]
02690
fqz_update_ctx
[function]
[call site]
02691
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02692
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02693
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02694
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02695
mm_prefetch
[function]
[call site]
02696
fqz_update_ctx
[function]
[call site]
02697
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02698
RC_FinishEncode
[function]
[call site]
02699
RC_ShiftLowCheck
[function]
[call site]
02700
RC_OutSize
[function]
[call site]
02701
fqz_destroy_models
[function]
[call site]
02702
fqz_free_parameters
[function]
[call site]
02703
lzma_mem_deflate
[function]
[call site]
02704
lzma_stream_buffer_bound
[call site]
02705
lzma_easy_buffer_encode
[call site]
02706
rans_compress
[function]
[call site]
02707
rans_compress_O1
[function]
[call site]
02708
rans_compress_O0
[function]
[call site]
02709
hist8
[function]
[call site]
02710
htscodecs_tls_calloc
[function]
[call site]
02711
htscodecs_tls_free
[function]
[call site]
02712
__assert_fail
[call site]
02713
RansEncSymbolInit
[function]
[call site]
02714
__assert_fail
[call site]
02715
__assert_fail
[call site]
02716
RansEncInit
[function]
[call site]
02717
RansEncInit
[function]
[call site]
02718
RansEncInit
[function]
[call site]
02719
RansEncInit
[function]
[call site]
02720
RansEncPutSymbol
[function]
[call site]
02721
__assert_fail
[call site]
02722
RansEncPutSymbol
[function]
[call site]
02723
RansEncPutSymbol
[function]
[call site]
02724
RansEncPutSymbol
[function]
[call site]
02725
RansEncPutSymbol
[function]
[call site]
02726
RansEncPutSymbol
[function]
[call site]
02727
RansEncPutSymbol
[function]
[call site]
02728
RansEncFlush
[function]
[call site]
02729
RansEncFlush
[function]
[call site]
02730
RansEncFlush
[function]
[call site]
02731
RansEncFlush
[function]
[call site]
02732
htscodecs_tls_alloc
[function]
[call site]
02733
hist1_4
[function]
[call site]
02734
htscodecs_tls_calloc
[function]
[call site]
02735
htscodecs_tls_free
[function]
[call site]
02736
RansEncSymbolInit
[function]
[call site]
02737
__assert_fail
[call site]
02738
RansEncInit
[function]
[call site]
02739
RansEncInit
[function]
[call site]
02740
RansEncInit
[function]
[call site]
02741
RansEncInit
[function]
[call site]
02742
RansEncPutSymbol
[function]
[call site]
02743
RansEncPutSymbol4
[function]
[call site]
02744
__assert_fail
[call site]
02745
__assert_fail
[call site]
02746
__assert_fail
[call site]
02747
__assert_fail
[call site]
02748
RansEncPutSymbol
[function]
[call site]
02749
RansEncPutSymbol
[function]
[call site]
02750
RansEncPutSymbol
[function]
[call site]
02751
RansEncPutSymbol
[function]
[call site]
02752
RansEncFlush
[function]
[call site]
02753
RansEncFlush
[function]
[call site]
02754
RansEncFlush
[function]
[call site]
02755
RansEncFlush
[function]
[call site]
02756
htscodecs_tls_free
[function]
[call site]
02757
rans_compress_O0
[function]
[call site]
02758
rans_compress_4x16
[function]
[call site]
02759
rans_compress_to_4x16
[function]
[call site]
02760
rans_compress_bound_4x16
[function]
[call site]
02761
var_put_u32
[function]
[call site]
02762
rans_compress_to_4x16
[function]
[call site]
02763
realloc
[call site]
02764
var_put_u32
[function]
[call site]
02765
var_put_u32
[function]
[call site]
02766
var_put_u32
[function]
[call site]
02767
hts_pack
[function]
[call site]
02768
var_put_u32
[function]
[call site]
02769
hts_rle_encode
[function]
[call site]
02770
rle_find_syms
[function]
[call site]
02771
var_put_u32
[function]
[call site]
02772
var_put_u32
[function]
[call site]
02773
var_put_u32
[function]
[call site]
02774
rans_enc_func
[function]
[call site]
02775
pthread_once
[call site]
02776
htscodecs_tls_cpu_init
[function]
[call site]
02777
strerror
[call site]
02778
fprintf
[call site]
02779
fprintf
[call site]
02780
var_put_u32
[function]
[call site]
02781
var_put_u32
[function]
[call site]
02782
var_put_u32
[function]
[call site]
02783
rans_enc_func
[function]
[call site]
02784
arith_compress_to
[function]
[call site]
02785
arith_compress_bound
[function]
[call site]
02786
var_put_u32
[function]
[call site]
02787
var_put_u32
[function]
[call site]
02788
arith_compress_to
[function]
[call site]
02789
arith_compress_to
[function]
[call site]
02790
var_put_u32
[function]
[call site]
02791
var_put_u32
[function]
[call site]
02792
hts_pack
[function]
[call site]
02793
var_put_u32
[function]
[call site]
02794
BZ2_bzBuffToBuffCompress
[call site]
02795
arith_compress_O0_RLE
[function]
[call site]
02796
arith_compress_bound
[function]
[call site]
02797
SIMPLE_MODEL256_init
[function]
[call site]
02798
htscodecs_tls_alloc
[function]
[call site]
02799
SIMPLE_MODEL258_init
[function]
[call site]
02800
RC_SetOutput
[function]
[call site]
02801
RC_SetOutputEnd
[function]
[call site]
02802
RC_StartEncode
[function]
[call site]
02803
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02804
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02805
SIMPLE_MODEL258_normalize
[function]
[call site]
02806
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02807
RC_FinishEncode
[function]
[call site]
02808
htscodecs_tls_free
[function]
[call site]
02809
RC_OutSize
[function]
[call site]
02810
htscodecs_tls_free
[function]
[call site]
02811
arith_compress_O1_RLE
[function]
[call site]
02812
arith_compress_bound
[function]
[call site]
02813
htscodecs_tls_alloc
[function]
[call site]
02814
SIMPLE_MODEL256_init
[function]
[call site]
02815
htscodecs_tls_alloc
[function]
[call site]
02816
htscodecs_tls_free
[function]
[call site]
02817
SIMPLE_MODEL258_init
[function]
[call site]
02818
RC_SetOutput
[function]
[call site]
02819
RC_SetOutputEnd
[function]
[call site]
02820
RC_StartEncode
[function]
[call site]
02821
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02822
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02823
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02824
RC_FinishEncode
[function]
[call site]
02825
htscodecs_tls_free
[function]
[call site]
02826
htscodecs_tls_free
[function]
[call site]
02827
RC_OutSize
[function]
[call site]
02828
htscodecs_tls_free
[function]
[call site]
02829
htscodecs_tls_free
[function]
[call site]
02830
arith_compress_O1
[function]
[call site]
02831
arith_compress_bound
[function]
[call site]
02832
htscodecs_tls_alloc
[function]
[call site]
02833
SIMPLE_MODEL256_init
[function]
[call site]
02834
RC_SetOutput
[function]
[call site]
02835
RC_SetOutputEnd
[function]
[call site]
02836
RC_StartEncode
[function]
[call site]
02837
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02838
RC_FinishEncode
[function]
[call site]
02839
htscodecs_tls_free
[function]
[call site]
02840
RC_OutSize
[function]
[call site]
02841
htscodecs_tls_free
[function]
[call site]
02842
arith_compress_O0
[function]
[call site]
02843
arith_compress_bound
[function]
[call site]
02844
SIMPLE_MODEL256_init
[function]
[call site]
02845
RC_SetOutput
[function]
[call site]
02846
RC_SetOutputEnd
[function]
[call site]
02847
RC_StartEncode
[function]
[call site]
02848
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02849
RC_FinishEncode
[function]
[call site]
02850
RC_OutSize
[function]
[call site]
02851
tok3_encode_names
[function]
[call site]
02852
create_context
[function]
[call site]
02853
build_trie
[function]
[call site]
02854
calloc
[call site]
02855
pool_create
[function]
[call site]
02856
pool_alloc
[function]
[call site]
02857
new_pool
[function]
[call site]
02858
realloc
[call site]
02859
free_context
[function]
[call site]
02860
free_context
[function]
[call site]
02861
encode_name
[function]
[call site]
02862
search_trie
[function]
[call site]
02863
__ctype_b_loc
[call site]
02864
__ctype_b_loc
[call site]
02865
__ctype_b_loc
[call site]
02866
__ctype_b_loc
[call site]
02867
__ctype_b_loc
[call site]
02868
calloc
[call site]
02869
__ctype_b_loc
[call site]
02870
strlen
[call site]
02871
encode_token_dup
[function]
[call site]
02872
encode_token_int
[function]
[call site]
02873
encode_token_type
[function]
[call site]
02874
descriptor_grow
[function]
[call site]
02875
realloc
[call site]
02876
descriptor_grow
[function]
[call site]
02877
encode_token_diff
[function]
[call site]
02878
encode_token_int
[function]
[call site]
02879
encode_token_char
[function]
[call site]
02880
encode_token_type
[function]
[call site]
02881
descriptor_grow
[function]
[call site]
02882
memcmp
[call site]
02883
encode_token_match
[function]
[call site]
02884
encode_token_type
[function]
[call site]
02885
encode_token_alpha
[function]
[call site]
02886
encode_token_type
[function]
[call site]
02887
descriptor_grow
[function]
[call site]
02888
encode_token_alpha
[function]
[call site]
02889
__ctype_b_loc
[call site]
02890
__ctype_b_loc
[call site]
02891
__ctype_b_loc
[call site]
02892
memcmp
[call site]
02893
encode_token_match
[function]
[call site]
02894
encode_token_alpha
[function]
[call site]
02895
encode_token_alpha
[function]
[call site]
02896
__ctype_b_loc
[call site]
02897
encode_token_match
[function]
[call site]
02898
encode_token_int1
[function]
[call site]
02899
encode_token_type
[function]
[call site]
02900
descriptor_grow
[function]
[call site]
02901
encode_token_int1_
[function]
[call site]
02902
descriptor_grow
[function]
[call site]
02903
encode_token_int
[function]
[call site]
02904
encode_token_int1_
[function]
[call site]
02905
encode_token_int
[function]
[call site]
02906
__ctype_b_loc
[call site]
02907
__ctype_b_loc
[call site]
02908
encode_token_match
[function]
[call site]
02909
encode_token_int1
[function]
[call site]
02910
encode_token_int
[function]
[call site]
02911
encode_token_int
[function]
[call site]
02912
encode_token_match
[function]
[call site]
02913
encode_token_char
[function]
[call site]
02914
encode_token_char
[function]
[call site]
02915
encode_token_end
[function]
[call site]
02916
encode_token_type
[function]
[call site]
02917
realloc
[call site]
02918
free_context
[function]
[call site]
02919
arith_compress_bound
[function]
[call site]
02920
free_context
[function]
[call site]
02921
compress
[function]
[call site]
02922
arith_encode
[function]
[call site]
02923
arith_compress_to
[function]
[call site]
02924
var_put_u32
[function]
[call site]
02925
rans_encode
[function]
[call site]
02926
rans_compress_to_4x16
[function]
[call site]
02927
var_put_u32
[function]
[call site]
02928
free_context
[function]
[call site]
02929
memcmp
[call site]
02930
free_context
[function]
[call site]
02931
free_context
[function]
[call site]
02932
pthread_mutex_lock
[call site]
02933
pthread_mutex_unlock
[call site]
02934
pthread_mutex_unlock
[call site]
02935
cram_compress_by_method
[function]
[call site]
02936
cram_block_method2str
[function]
[call site]
02937
hts_log
[function]
[call site]
02938
pthread_mutex_lock
[call site]
02939
pthread_mutex_unlock
[call site]
02940
cram_compress_block3
[function]
[call site]
02941
cram_compress_by_method
[function]
[call site]
02942
hts_log
[function]
[call site]
02943
cram_block_method2str
[function]
[call site]
02944
hts_log
[function]
[call site]
02945
pthread_mutex_lock
[call site]
02946
pthread_mutex_unlock
[call site]
02947
cram_compress_block2
[function]
[call site]
02948
cram_compress_block2
[function]
[call site]
02949
cram_compress_block2
[function]
[call site]
02950
cram_compress_block2
[function]
[call site]
02951
cram_compress_block2
[function]
[call site]
02952
cram_compress_block2
[function]
[call site]
02953
cram_compress_block2
[function]
[call site]
02954
cram_compress_block2
[function]
[call site]
02955
cram_compress_block2
[function]
[call site]
02956
cram_compress_block2
[function]
[call site]
02957
cram_compress_block2
[function]
[call site]
02958
cram_compress_block2
[function]
[call site]
02959
cram_compress_block2
[function]
[call site]
02960
cram_compress_block2
[function]
[call site]
02961
cram_compress_block2
[function]
[call site]
02962
hts_realloc_p
[function]
[call site]
02963
cram_free_block
[function]
[call site]
02964
cram_encode_slice_header
[function]
[call site]
02965
cram_new_block
[function]
[call site]
02966
hts_malloc_pse
[function]
[call site]
02967
hts_add_sat2
[function]
[call site]
02968
hts_prod_sat2
[function]
[call site]
02969
hts_add_sat2
[function]
[call site]
02970
hts_malloc
[function]
[call site]
02971
cram_free_block
[function]
[call site]
02972
hts_log
[function]
[call site]
02973
cram_free_block
[function]
[call site]
02974
__assert_fail
[call site]
02975
cram_encode_compression_header
[function]
[call site]
02976
cram_new_block
[function]
[call site]
02977
cram_new_block
[function]
[call site]
02978
itf8_put_blk
[function]
[call site]
02979
itf8_put
[function]
[call site]
02980
block_append
[function]
[call site]
02981
itf8_put_blk
[function]
[call site]
02982
itf8_put_blk
[function]
[call site]
02983
itf8_put_blk
[function]
[call site]
02984
itf8_put_blk
[function]
[call site]
02985
itf8_put_blk
[function]
[call site]
02986
kh_destroy_map
[function]
[call site]
02987
kh_init_map
[function]
[call site]
02988
calloc
[call site]
02989
kh_put_map
[function]
[call site]
02990
kh_resize_map
[function]
[call site]
02991
__errno_location
[call site]
02992
realloc
[call site]
02993
__ac_FNV1a_hash_string
[function]
[call site]
02994
strcmp
[call site]
02995
kh_put_map
[function]
[call site]
02996
kh_put_map
[function]
[call site]
02997
kh_put_map
[function]
[call site]
02998
kh_put_map
[function]
[call site]
02999
kh_put_map
[function]
[call site]
03000
kh_put_map
[function]
[call site]
03001
kh_put_map
[function]
[call site]
03002
block_append
[function]
[call site]
03003
block_append_char
[function]
[call site]
03004
sub_idx
[function]
[call site]
03005
sub_idx
[function]
[call site]
03006
sub_idx
[function]
[call site]
03007
sub_idx
[function]
[call site]
03008
sub_idx
[function]
[call site]
03009
sub_idx
[function]
[call site]
03010
sub_idx
[function]
[call site]
03011
sub_idx
[function]
[call site]
03012
sub_idx
[function]
[call site]
03013
sub_idx
[function]
[call site]
03014
sub_idx
[function]
[call site]
03015
sub_idx
[function]
[call site]
03016
sub_idx
[function]
[call site]
03017
sub_idx
[function]
[call site]
03018
sub_idx
[function]
[call site]
03019
sub_idx
[function]
[call site]
03020
sub_idx
[function]
[call site]
03021
sub_idx
[function]
[call site]
03022
sub_idx
[function]
[call site]
03023
sub_idx
[function]
[call site]
03024
block_append
[function]
[call site]
03025
block_append
[function]
[call site]
03026
block_append
[function]
[call site]
03027
block_append
[function]
[call site]
03028
block_append
[function]
[call site]
03029
hts_log
[function]
[call site]
03030
cram_free_block
[function]
[call site]
03031
hts_malloc_p
[function]
[call site]
03032
cram_ref_decr
[function]
[call site]
03033
cram_ref_decr
[function]
[call site]
03034
cram_flush_container2
[function]
[call site]
03035
htell
[function]
[call site]
03036
cram_write_container
[function]
[call site]
03037
itf8_put
[function]
[call site]
03038
crc32
[call site]
03039
hwrite
[function]
[call site]
03040
htell
[function]
[call site]
03041
cram_write_block
[function]
[call site]
03042
__assert_fail
[call site]
03043
hputc
[function]
[call site]
03044
hputc2
[function]
[call site]
03045
flush_buffer
[function]
[call site]
03046
hputc
[function]
[call site]
03047
hwrite
[function]
[call site]
03048
hwrite
[function]
[call site]
03049
hwrite
[function]
[call site]
03050
__assert_fail
[call site]
03051
crc32
[call site]
03052
crc32
[call site]
03053
crc32
[call site]
03054
int32_encode
[function]
[call site]
03055
hwrite
[function]
[call site]
03056
htell
[function]
[call site]
03057
cram_write_block
[function]
[call site]
03058
cram_write_block
[function]
[call site]
03059
htell
[function]
[call site]
03060
cram_index_slice
[function]
[call site]
03061
hts_log
[function]
[call site]
03062
cram_index_build_multiref
[function]
[call site]
03063
cram_decode_slice
[function]
[call site]
03064
cram_dependent_data_series
[function]
[call site]
03065
cram_uncompress_block
[function]
[call site]
03066
cram_uncompress_block
[function]
[call site]
03067
hts_calloc_ps
[function]
[call site]
03068
cram_codec_to_id
[function]
[call site]
03069
cram_codec_to_id
[function]
[call site]
03070
cram_codec_to_id
[function]
[call site]
03071
hts_log
[function]
[call site]
03072
cram_uncompress_block
[function]
[call site]
03073
cram_codec_to_id
[function]
[call site]
03074
cram_uncompress_block
[function]
[call site]
03075
cram_codec_to_id
[function]
[call site]
03076
cram_codec_to_id
[function]
[call site]
03077
block_resize_exact
[function]
[call site]
03078
block_resize_exact
[function]
[call site]
03079
block_resize_exact
[function]
[call site]
03080
strcmp
[call site]
03081
hts_malloc_p
[function]
[call site]
03082
hts_log
[function]
[call site]
03083
cram_get_block_by_id
[function]
[call site]
03084
cram_uncompress_block
[function]
[call site]
03085
hts_log
[function]
[call site]
03086
cram_get_ref
[function]
[call site]
03087
hts_log
[function]
[call site]
03088
pthread_mutex_lock
[call site]
03089
pthread_mutex_lock
[call site]
03090
pthread_mutex_unlock
[call site]
03091
pthread_mutex_unlock
[call site]
03092
hts_log
[function]
[call site]
03093
memcmp
[call site]
03094
hts_log
[function]
[call site]
03095
hts_log
[function]
[call site]
03096
hts_md5_init
[function]
[call site]
03097
hts_md5_update
[function]
[call site]
03098
hts_md5_final
[function]
[call site]
03099
hts_md5_destroy
[function]
[call site]
03100
cram_get_block_by_id
[function]
[call site]
03101
hts_md5_init
[function]
[call site]
03102
hts_md5_update
[function]
[call site]
03103
hts_md5_final
[function]
[call site]
03104
hts_md5_destroy
[function]
[call site]
03105
memcmp
[call site]
03106
sam_hdr_tid2name
[function]
[call site]
03107
hts_log
[function]
[call site]
03108
md5_print
[function]
[call site]
03109
hts_log
[function]
[call site]
03110
md5_print
[function]
[call site]
03111
hts_log
[function]
[call site]
03112
sam_hdr_find_tag_id
[function]
[call site]
03113
sam_hdr_fill_hrecs
[function]
[call site]
03114
sam_hrecs_find_type_id
[function]
[call site]
03115
sam_hrecs_find_key
[function]
[call site]
03116
kputsn
[function]
[call site]
03117
hts_log
[function]
[call site]
03118
hts_log
[function]
[call site]
03119
ks_free
[function]
[call site]
03120
ks_initialize
[function]
[call site]
03121
pthread_mutex_lock
[call site]
03122
pthread_mutex_lock
[call site]
03123
calloc
[call site]
03124
pthread_mutex_unlock
[call site]
03125
pthread_mutex_unlock
[call site]
03126
hts_log
[function]
[call site]
03127
pthread_mutex_lock
[call site]
03128
pthread_mutex_unlock
[call site]
03129
cram_get_ref
[function]
[call site]
03130
pthread_mutex_lock
[call site]
03131
pthread_mutex_unlock
[call site]
03132
pthread_mutex_lock
[call site]
03133
pthread_mutex_unlock
[call site]
03134
cram_ref_decr
[function]
[call site]
03135
pthread_mutex_lock
[call site]
03136
pthread_mutex_lock
[call site]
03137
pthread_mutex_unlock
[call site]
03138
pthread_mutex_unlock
[call site]
03139
hts_log
[function]
[call site]
03140
hts_log
[function]
[call site]
03141
pthread_mutex_lock
[call site]
03142
pthread_mutex_unlock
[call site]
03143
hts_log
[function]
[call site]
03144
hts_log
[function]
[call site]
03145
cram_decode_tlen
[function]
[call site]
03146
cram_decode_tlen
[function]
[call site]
03147
cram_decode_tlen
[function]
[call site]
03148
cram_decode_aux_1_0
[function]
[call site]
03149
map_find
[function]
[call site]
03150
block_append
[function]
[call site]
03151
cram_decode_aux
[function]
[call site]
03152
strlen
[call site]
03153
map_find
[function]
[call site]
03154
block_append
[function]
[call site]
03155
aux_ele_size
[function]
[call site]
03156
hts_log
[function]
[call site]
03157
block_resize
[function]
[call site]
03158
block_resize
[function]
[call site]
03159
hts_log
[function]
[call site]
03160
cram_decode_seq
[function]
[call site]
03161
block_append
[function]
[call site]
03162
hts_realloc_p
[function]
[call site]
03163
hts_log
[function]
[call site]
03164
hts_log
[function]
[call site]
03165
memchr
[call site]
03166
add_md_char
[function]
[call site]
03167
block_append_uint
[function]
[call site]
03168
block_grow
[function]
[call site]
03169
append_uint32
[function]
[call site]
03170
block_append_char
[function]
[call site]
03171
block_append_uint
[function]
[call site]
03172
add_md_char
[function]
[call site]
03173
block_append_uint
[function]
[call site]
03174
block_append_char
[function]
[call site]
03175
block_append
[function]
[call site]
03176
block_append_char
[function]
[call site]
03177
block_append
[function]
[call site]
03178
block_append_uint
[function]
[call site]
03179
block_append_uint
[function]
[call site]
03180
block_append_uint
[function]
[call site]
03181
block_append_char
[function]
[call site]
03182
block_append_uint
[function]
[call site]
03183
block_append_char
[function]
[call site]
03184
hts_log
[function]
[call site]
03185
memchr
[call site]
03186
add_md_char
[function]
[call site]
03187
hts_realloc_p
[function]
[call site]
03188
block_append_uint
[function]
[call site]
03189
hts_realloc_p
[function]
[call site]
03190
block_append_char
[function]
[call site]
03191
block_append
[function]
[call site]
03192
hts_log
[function]
[call site]
03193
pthread_mutex_lock
[call site]
03194
cram_ref_decr
[function]
[call site]
03195
cram_ref_decr
[function]
[call site]
03196
pthread_mutex_unlock
[call site]
03197
cram_decode_slice_xref
[function]
[call site]
03198
hts_log
[function]
[call site]
03199
cram_free_block
[function]
[call site]
03200
block_resize_exact
[function]
[call site]
03201
block_resize_exact
[function]
[call site]
03202
block_resize_exact
[function]
[call site]
03203
block_resize_exact
[function]
[call site]
03204
bulk_cram_to_bam
[function]
[call site]
03205
pthread_mutex_lock
[call site]
03206
pthread_mutex_unlock
[call site]
03207
hts_realloc_p
[function]
[call site]
03208
bam_set_mempolicy
[function]
[call site]
03209
bam_get_mempolicy
[function]
[call site]
03210
calloc
[call site]
03211
calloc
[call site]
03212
bam_set_mempolicy
[function]
[call site]
03213
cram_to_bam
[function]
[call site]
03214
hts_log
[function]
[call site]
03215
strlen
[call site]
03216
append_uint64
[function]
[call site]
03217
append_uint32
[function]
[call site]
03218
append_uint32
[function]
[call site]
03219
append_sub32
[function]
[call site]
03220
append_uint32
[function]
[call site]
03221
append_sub32
[function]
[call site]
03222
append_uint64
[function]
[call site]
03223
bam_get_mempolicy
[function]
[call site]
03224
bam_set1
[function]
[call site]
03225
bam_cigar2rqlens
[function]
[call site]
03226
hts_log
[function]
[call site]
03227
__errno_location
[call site]
03228
hts_log
[function]
[call site]
03229
__errno_location
[call site]
03230
hts_log
[function]
[call site]
03231
__errno_location
[call site]
03232
hts_log
[function]
[call site]
03233
__errno_location
[call site]
03234
subtract_check_underflow
[function]
[call site]
03235
subtract_check_underflow
[function]
[call site]
03236
subtract_check_underflow
[function]
[call site]
03237
subtract_check_underflow
[function]
[call site]
03238
subtract_check_underflow
[function]
[call site]
03239
hts_log
[function]
[call site]
03240
__errno_location
[call site]
03241
hts_add_sat2
[function]
[call site]
03242
realloc_bam_data
[function]
[call site]
03243
sam_realloc_bam_data
[function]
[call site]
03244
__errno_location
[call site]
03245
__errno_location
[call site]
03246
bam_get_mempolicy
[function]
[call site]
03247
realloc
[call site]
03248
bam_get_mempolicy
[function]
[call site]
03249
bam_set_mempolicy
[function]
[call site]
03250
hts_reg2bin
[function]
[call site]
03251
strncpy
[call site]
03252
bam_tag2cigar
[function]
[call site]
03253
bam_aux_get
[function]
[call site]
03254
__errno_location
[call site]
03255
__errno_location
[call site]
03256
__errno_location
[call site]
03257
le_to_u32
[function]
[call site]
03258
possibly_expand_bam_data
[function]
[call site]
03259
__errno_location
[call site]
03260
sam_realloc_bam_data
[function]
[call site]
03261
bam_endpos
[function]
[call site]
03262
bam_cigar2rlen
[function]
[call site]
03263
hts_reg2bin
[function]
[call site]
03264
hts_log
[function]
[call site]
03265
bam_cigar2qlen
[function]
[call site]
03266
hts_log
[function]
[call site]
03267
pthread_mutex_lock
[call site]
03268
cram_ref_decr
[function]
[call site]
03269
pthread_mutex_unlock
[call site]
03270
hts_log
[function]
[call site]
03271
snprintf
[call site]
03272
strlen
[call site]
03273
bgzf_write
[function]
[call site]
03274
hwrite
[function]
[call site]
03275
__assert_fail
[call site]
03276
lazy_flush
[function]
[call site]
03277
mt_queue
[function]
[call site]
03278
bgzf_flush
[function]
[call site]
03279
snprintf
[call site]
03280
strlen
[call site]
03281
bgzf_write
[function]
[call site]
03282
snprintf
[call site]
03283
strlen
[call site]
03284
bgzf_write
[function]
[call site]
03285
__errno_location
[call site]
03286
hts_tpool_dispatch2
[function]
[call site]
03287
hts_tpool_dispatch3
[function]
[call site]
03288
cram_flush_thread
[function]
[call site]
03289
cram_encode_container
[function]
[call site]
03290
hts_log
[function]
[call site]
03291
__errno_location
[call site]
03292
cram_flush_result
[function]
[call site]
03293
hts_tpool_next_result
[function]
[call site]
03294
pthread_mutex_lock
[call site]
03295
hts_tpool_next_result_locked
[function]
[call site]
03296
pthread_mutex_unlock
[call site]
03297
hts_tpool_result_data
[function]
[call site]
03298
hts_tpool_delete_result
[function]
[call site]
03299
cram_flush_container2
[function]
[call site]
03300
cram_free_slice
[function]
[call site]
03301
cram_free_slice
[function]
[call site]
03302
cram_free_container
[function]
[call site]
03303
hts_tpool_delete_result
[function]
[call site]
03304
cram_free_container
[function]
[call site]
03305
hts_usleep
[function]
[call site]
03306
cram_drain_rqueue
[function]
[call site]
03307
hts_tpool_process_flush
[function]
[call site]
03308
cram_flush_result
[function]
[call site]
03309
hts_tpool_process_destroy
[function]
[call site]
03310
pthread_mutex_destroy
[call site]
03311
pthread_mutex_destroy
[call site]
03312
pthread_mutex_destroy
[call site]
03313
pthread_mutex_destroy
[call site]
03314
cram_write_eof_block
[function]
[call site]
03315
cram_encode_compression_header
[function]
[call site]
03316
cram_write_container
[function]
[call site]
03317
cram_write_block
[function]
[call site]
03318
cram_close
[function]
[call site]
03319
free_bam_list
[function]
[call site]
03320
hclose
[function]
[call site]
03321
cram_free_file_def
[function]
[call site]
03322
sam_hdr_destroy
[function]
[call site]
03323
cram_free_container
[function]
[call site]
03324
cram_free_container
[function]
[call site]
03325
refs_free
[function]
[call site]
03326
kh_destroy_m_metrics
[function]
[call site]
03327
cram_index_free
[function]
[call site]
03328
cram_index_free_recurse
[function]
[call site]
03329
cram_index_free_recurse
[function]
[call site]
03330
hts_tpool_destroy
[function]
[call site]
03331
bgzf_close
[function]
[call site]
03332
cram_free_block
[function]
[call site]
03333
kh_destroy_map
[function]
[call site]
03334
cram_free_block
[function]
[call site]
03335
sam_state_destroy
[function]
[call site]
03336
fastq_state_destroy
[function]
[call site]
03337
kh_destroy_tag
[function]
[call site]
03338
ks_free
[function]
[call site]
03339
ks_initialize
[function]
[call site]
03340
ks_free
[function]
[call site]
03341
ks_free
[function]
[call site]
03342
regfree
[call site]
03343
bgzf_close
[function]
[call site]
03344
hclose
[function]
[call site]
03345
hts_idx_close_otf_fp
[function]
[call site]
03346
need_idx_ugly_delay_hack
[function]
[call site]
03347
idx_write_uint64
[function]
[call site]
03348
ed_is_big
[function]
[call site]
03349
ed_swap_8
[function]
[call site]
03350
bgzf_write
[function]
[call site]
03351
bgzf_close
[function]
[call site]
03352
__errno_location
[call site]
03353
sam_hdr_destroy
[function]
[call site]
03354
hts_idx_destroy
[function]
[call site]
03355
cram_index_free
[function]
[call site]
03356
kh_destroy_bin
[function]
[call site]
03357
hts_filter_free
[function]
[call site]
03358
__errno_location
[call site]
03359
view_sam
[function]
[call site]
03360
abort
[call site]
03361
hopen
[function]
[call site]
03362
hts_hopen
[function]
[call site]
03363
hclose
[function]
[call site]
03364
abort
[call site]
03365
hts_open
[function]
[call site]
03366
hts_open_format
[function]
[call site]
03367
strncpy
[call site]
03368
strchr
[call site]
03369
strchr
[call site]
03370
strchr
[call site]
03371
strstr
[call site]
03372
strdup
[call site]
03373
hopen
[function]
[call site]
03374
hts_hopen
[function]
[call site]
03375
hts_opt_apply
[function]
[call site]
03376
__errno_location
[call site]
03377
__errno_location
[call site]
03378
__errno_location
[call site]
03379
__errno_location
[call site]
03380
strerror
[call site]
03381
hts_log
[function]
[call site]
03382
hclose_abruptly
[function]
[call site]
03383
abort
[call site]
03384
sam_hdr_read
[function]
[call site]
03385
__errno_location
[call site]
03386
bam_hdr_read
[function]
[call site]
03387
bgzf_check_EOF
[function]
[call site]
03388
pthread_mutex_lock
[call site]
03389
pthread_cond_signal
[call site]
03390
hts_tpool_wake_dispatch
[function]
[call site]
03391
pthread_mutex_unlock
[call site]
03392
pthread_cond_wait
[call site]
03393
pthread_cond_signal
[call site]
03394
abort
[call site]
03395
pthread_mutex_unlock
[call site]
03396
bgzf_check_EOF_common
[function]
[call site]
03397
htell
[function]
[call site]
03398
hseek
[function]
[call site]
03399
__errno_location
[call site]
03400
hclearerr
[function]
[call site]
03401
__errno_location
[call site]
03402
hclearerr
[function]
[call site]
03403
hread
[function]
[call site]
03404
hseek
[function]
[call site]
03405
memcmp
[call site]
03406
perror
[call site]
03407
hts_log
[function]
[call site]
03408
bgzf_read
[function]
[call site]
03409
memcmp
[call site]
03410
hts_log
[function]
[call site]
03411
sam_hdr_init
[function]
[call site]
03412
bgzf_read
[function]
[call site]
03413
le_to_u32
[function]
[call site]
03414
bgzf_read
[function]
[call site]
03415
bgzf_read
[function]
[call site]
03416
ed_swap_4p
[function]
[call site]
03417
ed_swap_4
[function]
[call site]
03418
calloc
[call site]
03419
calloc
[call site]
03420
bgzf_read
[function]
[call site]
03421
ed_swap_4p
[function]
[call site]
03422
bgzf_read
[function]
[call site]
03423
realloc
[call site]
03424
bgzf_read
[function]
[call site]
03425
ed_swap_4p
[function]
[call site]
03426
hts_log
[function]
[call site]
03427
hts_log
[function]
[call site]
03428
hts_log
[function]
[call site]
03429
sam_hdr_destroy
[function]
[call site]
03430
sam_hdr_sanitise
[function]
[call site]
03431
hts_log
[function]
[call site]
03432
sam_hdr_destroy
[function]
[call site]
03433
hts_log
[function]
[call site]
03434
hts_log
[function]
[call site]
03435
hts_log
[function]
[call site]
03436
sam_hdr_destroy
[function]
[call site]
03437
realloc
[call site]
03438
sam_hdr_destroy
[function]
[call site]
03439
sam_hdr_dup
[function]
[call site]
03440
sam_hdr_init
[function]
[call site]
03441
calloc
[call site]
03442
calloc
[call site]
03443
strdup
[call site]
03444
sam_hdr_dup_sdict
[function]
[call site]
03445
kh_init_s2i
[function]
[call site]
03446
kh_get_s2i
[function]
[call site]
03447
kh_put_s2i
[function]
[call site]
03448
kh_destroy_s2i
[function]
[call site]
03449
sam_hrecs_rebuild_text
[function]
[call site]
03450
kputsn
[function]
[call site]
03451
sam_hrecs_rebuild_lines
[function]
[call site]
03452
kputsn
[function]
[call site]
03453
build_header_line
[function]
[call site]
03454
kputc_
[function]
[call site]
03455
kputsn
[function]
[call site]
03456
kputc_
[function]
[call site]
03457
kputsn
[function]
[call site]
03458
kputc
[function]
[call site]
03459
ks_release
[function]
[call site]
03460
ks_release
[function]
[call site]
03461
sam_hdr_update_target_arrays
[function]
[call site]
03462
hts_malloc_ps
[function]
[call site]
03463
sam_hdr_destroy
[function]
[call site]
03464
sam_hdr_sanitise
[function]
[call site]
03465
sam_hdr_create
[function]
[call site]
03466
sam_hdr_init
[function]
[call site]
03467
sam_hdr_build_from_sam_file
[function]
[call site]
03468
sam_hrecs_new
[function]
[call site]
03469
hts_getline
[function]
[call site]
03470
hts_log
[function]
[call site]
03471
abort
[call site]
03472
kgetline2
[function]
[call site]
03473
ks_resize
[function]
[call site]
03474
hgetln_wrapper
[function]
[call site]
03475
hgetln
[function]
[call site]
03476
herrno
[function]
[call site]
03477
__errno_location
[call site]
03478
bgzf_getline
[function]
[call site]
03479
bgzf_read_block
[function]
[call site]
03480
memchr
[call site]
03481
ks_expand
[function]
[call site]
03482
bgzf_htell
[function]
[call site]
03483
hts_log
[function]
[call site]
03484
isalpha_c
[function]
[call site]
03485
sam_hrecs_error
[function]
[call site]
03486
strncmp
[call site]
03487
kputc
[function]
[call site]
03488
valid_sam_header_type
[function]
[call site]
03489
hts_log
[function]
[call site]
03490
warn_if_known_stderr
[function]
[call site]
03491
sam_hrecs_parse_single_line
[function]
[call site]
03492
TYPEKEY
[function]
[call site]
03493
kputsn
[function]
[call site]
03494
kputc
[function]
[call site]
03495
bgzf_peek
[function]
[call site]
03496
bgzf_read_block
[function]
[call site]
03497
hts_log
[function]
[call site]
03498
hpeek
[function]
[call site]
03499
strstr
[call site]
03500
hopen
[function]
[call site]
03501
khgetline
[function]
[call site]
03502
kgetline
[function]
[call site]
03503
ks_resize
[function]
[call site]
03504
strlen
[call site]
03505
hgets_wrapper
[function]
[call site]
03506
hgets
[function]
[call site]
03507
strchr
[call site]
03508
strtoll
[call site]
03509
kputs
[function]
[call site]
03510
kputsn
[function]
[call site]
03511
kputs
[function]
[call site]
03512
kputll
[function]
[call site]
03513
kputc
[function]
[call site]
03514
sam_hrecs_parse_single_line
[function]
[call site]
03515
ks_free
[function]
[call site]
03516
hclose
[function]
[call site]
03517
hts_log
[function]
[call site]
03518
kh_grow_to_fit_m_s2i
[function]
[call site]
03519
hts_realloc_p
[function]
[call site]
03520
sam_hrecs_update_hashes
[function]
[call site]
03521
kputsn
[function]
[call site]
03522
ks_release
[function]
[call site]
03523
sam_hdr_update_target_arrays
[function]
[call site]
03524
ks_free
[function]
[call site]
03525
sam_hdr_destroy
[function]
[call site]
03526
sam_hdr_destroy
[function]
[call site]
03527
sam_hdr_sanitise
[function]
[call site]
03528
sam_hdr_init
[function]
[call site]
03529
__errno_location
[call site]
03530
__errno_location
[call site]
03531
sam_hdr_incr_ref
[function]
[call site]
03532
strlen
[call site]
03533
hts_close_or_abort
[function]
[call site]
03534
hts_close
[function]
[call site]
03535
abort
[call site]
03536
hts_close
[function]
[call site]
03537
hts_close
[function]
[call site]
03538
sam_hdr_count_lines
[function]
[call site]
03539
sam_hdr_fill_hrecs
[function]
[call site]
03540
sam_hrecs_find_type_id
[function]
[call site]
03541
sam_hdr_write
[function]
[call site]
03542
__errno_location
[call site]
03543
bam_hdr_write
[function]
[call site]
03544
sam_hrecs_rebuild_text
[function]
[call site]
03545
hts_log
[function]
[call site]
03546
hts_log
[function]
[call site]
03547
hts_log
[function]
[call site]
03548
hts_log
[function]
[call site]
03549
hts_log
[function]
[call site]
03550
hts_log
[function]
[call site]
03551
bgzf_write
[function]
[call site]
03552
ed_swap_4
[function]
[call site]
03553
bgzf_write
[function]
[call site]
03554
bgzf_write
[function]
[call site]
03555
ed_swap_4
[function]
[call site]
03556
bgzf_write
[function]
[call site]
03557
bgzf_write
[function]
[call site]
03558
bgzf_write
[function]
[call site]
03559
bgzf_write
[function]
[call site]
03560
strlen
[call site]
03561
ed_swap_4
[function]
[call site]
03562
bgzf_write
[function]
[call site]
03563
bgzf_write
[function]
[call site]
03564
bgzf_write
[function]
[call site]
03565
ed_swap_4
[function]
[call site]
03566
bgzf_write
[function]
[call site]
03567
bgzf_write
[function]
[call site]
03568
bgzf_flush
[function]
[call site]
03569
cram_set_header2
[function]
[call site]
03570
sam_hdr_destroy
[function]
[call site]
03571
sam_hdr_dup
[function]
[call site]
03572
refs_from_header
[function]
[call site]
03573
cram_load_reference
[function]
[call site]
03574
cram_write_SAM_hdr
[function]
[call site]
03575
cram_write_file_def
[function]
[call site]
03576
hwrite
[function]
[call site]
03577
sam_hrecs_find_rg
[function]
[call site]
03578
sam_hdr_add_line
[function]
[call site]
03579
sam_hdr_fill_hrecs
[function]
[call site]
03580
sam_hrecs_vadd
[function]
[call site]
03581
rebuild_target_arrays
[function]
[call site]
03582
redact_header_text
[function]
[call site]
03583
refs_from_header
[function]
[call site]
03584
refs2id
[function]
[call site]
03585
sam_hrecs_find_type_id
[function]
[call site]
03586
sam_hrecs_find_key
[function]
[call site]
03587
cram_get_ref
[function]
[call site]
03588
hts_log
[function]
[call site]
03589
hts_log
[function]
[call site]
03590
hts_log
[function]
[call site]
03591
pthread_mutex_lock
[call site]
03592
pthread_mutex_unlock
[call site]
03593
hts_md5_init
[function]
[call site]
03594
hts_md5_update
[function]
[call site]
03595
hts_md5_final
[function]
[call site]
03596
hts_md5_destroy
[function]
[call site]
03597
cram_ref_decr
[function]
[call site]
03598
hts_md5_hex
[function]
[call site]
03599
sam_hdr_update_line
[function]
[call site]
03600
sam_hdr_fill_hrecs
[function]
[call site]
03601
sam_hrecs_find_type_id
[function]
[call site]
03602
check_for_name_update
[function]
[call site]
03603
TYPEKEY
[function]
[call site]
03604
TYPEKEY
[function]
[call site]
03605
TYPEKEY
[function]
[call site]
03606
sam_hrecs_find_key
[function]
[call site]
03607
__assert_fail
[call site]
03608
strcmp
[call site]
03609
strcmp
[call site]
03610
kh_get_m_s2i
[function]
[call site]
03611
hts_log
[function]
[call site]
03612
TYPEKEY
[function]
[call site]
03613
hts_log
[function]
[call site]
03614
sam_hrecs_vupdate
[function]
[call site]
03615
kh_get_m_s2i
[function]
[call site]
03616
sam_hrecs_find_key
[function]
[call site]
03617
__assert_fail
[call site]
03618
__assert_fail
[call site]
03619
__assert_fail
[call site]
03620
kh_del_m_s2i
[function]
[call site]
03621
kh_put_m_s2i
[function]
[call site]
03622
hts_log
[function]
[call site]
03623
TYPEKEY
[function]
[call site]
03624
sam_hrecs_update_hashes
[function]
[call site]
03625
rebuild_target_arrays
[function]
[call site]
03626
redact_header_text
[function]
[call site]
03627
full_path
[function]
[call site]
03628
strlen
[call site]
03629
hisremote
[function]
[call site]
03630
hts_log
[function]
[call site]
03631
strncpy
[call site]
03632
toupper_c
[function]
[call site]
03633
strncpy
[call site]
03634
getcwd
[call site]
03635
strlen
[call site]
03636
strncpy
[call site]
03637
snprintf
[call site]
03638
sam_hdr_update_line
[function]
[call site]
03639
sam_hdr_remove_tag_all
[function]
[call site]
03640
strcmp
[call site]
03641
sam_hdr_fill_hrecs
[function]
[call site]
03642
TYPEKEY
[function]
[call site]
03643
kh_get_sam_hrecs_t
[function]
[call site]
03644
sam_hrecs_remove_key
[function]
[call site]
03645
sam_hrecs_find_key
[function]
[call site]
03646
TYPEKEY
[function]
[call site]
03647
__assert_fail
[call site]
03648
sam_hrecs_find_key
[function]
[call site]
03649
__assert_fail
[call site]
03650
kh_get_m_s2i
[function]
[call site]
03651
sam_hrecs_remove_ref_altnames
[function]
[call site]
03652
kstrtok
[function]
[call site]
03653
ks_clear
[function]
[call site]
03654
kputsn
[function]
[call site]
03655
kh_get_m_s2i
[function]
[call site]
03656
strcmp
[call site]
03657
kh_del_m_s2i
[function]
[call site]
03658
pool_free
[function]
[call site]
03659
hts_log
[function]
[call site]
03660
sam_hdr_length
[function]
[call site]
03661
sam_hdr_rebuild
[function]
[call site]
03662
rebuild_target_arrays
[function]
[call site]
03663
hts_log
[function]
[call site]
03664
sam_hdr_link_pg
[function]
[call site]
03665
sam_hdr_fill_hrecs
[function]
[call site]
03666
hts_realloc_p
[function]
[call site]
03667
calloc
[call site]
03668
__assert_fail
[call site]
03669
kh_get_m_s2i
[function]
[call site]
03670
hts_log
[function]
[call site]
03671
hts_log
[function]
[call site]
03672
redact_header_text
[function]
[call site]
03673
hts_log
[function]
[call site]
03674
sam_hrecs_rebuild_text
[function]
[call site]
03675
ks_free
[function]
[call site]
03676
hts_log
[function]
[call site]
03677
ks_len
[function]
[call site]
03678
ks_release
[function]
[call site]
03679
hts_log
[function]
[call site]
03680
int32_encode
[function]
[call site]
03681
sam_hdr_str
[function]
[call site]
03682
sam_hdr_rebuild
[function]
[call site]
03683
hwrite
[function]
[call site]
03684
cram_new_block
[function]
[call site]
03685
cram_new_container
[function]
[call site]
03686
calloc
[call site]
03687
calloc
[call site]
03688
cram_new_compression_header
[function]
[call site]
03689
calloc
[call site]
03690
cram_new_block
[function]
[call site]
03691
kh_init_m_s2i
[function]
[call site]
03692
cram_free_block
[function]
[call site]
03693
string_pool_create
[function]
[call site]
03694
kh_destroy_m_s2i
[function]
[call site]
03695
cram_free_block
[function]
[call site]
03696
cram_stats_create
[function]
[call site]
03697
calloc
[call site]
03698
kh_init_m_tagmap
[function]
[call site]
03699
calloc
[call site]
03700
cram_free_block
[function]
[call site]
03701
cram_free_container
[function]
[call site]
03702
int32_put_blk
[function]
[call site]
03703
block_append
[function]
[call site]
03704
sam_hdr_str
[function]
[call site]
03705
block_append
[function]
[call site]
03706
cram_compress_block
[function]
[call site]
03707
cram_compress_block2
[function]
[call site]
03708
cram_free_block
[function]
[call site]
03709
cram_free_container
[function]
[call site]
03710
calloc
[call site]
03711
cram_free_block
[function]
[call site]
03712
cram_free_container
[function]
[call site]
03713
block_append
[function]
[call site]
03714
cram_write_container
[function]
[call site]
03715
cram_free_block
[function]
[call site]
03716
cram_free_container
[function]
[call site]
03717
cram_write_block
[function]
[call site]
03718
cram_free_block
[function]
[call site]
03719
cram_free_container
[function]
[call site]
03720
block_resize
[function]
[call site]
03721
cram_write_block
[function]
[call site]
03722
cram_free_block
[function]
[call site]
03723
cram_free_container
[function]
[call site]
03724
cram_free_block
[function]
[call site]
03725
cram_free_container
[function]
[call site]
03726
hflush
[function]
[call site]
03727
sam_hrecs_rebuild_text
[function]
[call site]
03728
strstr
[call site]
03729
bgzf_write
[function]
[call site]
03730
hwrite
[function]
[call site]
03731
kputsn
[function]
[call site]
03732
kputs
[function]
[call site]
03733
kputsn
[function]
[call site]
03734
kputw
[function]
[call site]
03735
kputc
[function]
[call site]
03736
bgzf_write
[function]
[call site]
03737
hwrite
[function]
[call site]
03738
bgzf_flush
[function]
[call site]
03739
hflush
[function]
[call site]
03740
__errno_location
[call site]
03741
sam_hdr_dup
[function]
[call site]
03742
sam_hdr_destroy
[function]
[call site]
03743
bam_init1
[function]
[call site]
03744
calloc
[call site]
03745
sam_read1
[function]
[call site]
03746
sam_read1_bam
[function]
[call site]
03747
bam_read1
[function]
[call site]
03748
bgzf_read_small
[function]
[call site]
03749
bgzf_read
[function]
[call site]
03750
ed_swap_4p
[function]
[call site]
03751
bgzf_read
[function]
[call site]
03752
le_to_u32
[function]
[call site]
03753
le_to_i32
[function]
[call site]
03754
le_to_u32
[function]
[call site]
03755
le_to_u32
[function]
[call site]
03756
le_to_u32
[function]
[call site]
03757
le_to_u32
[function]
[call site]
03758
le_to_i32
[function]
[call site]
03759
le_to_i32
[function]
[call site]
03760
realloc_bam_data
[function]
[call site]
03761
bgzf_read_small
[function]
[call site]
03762
fixup_missing_qname_nul
[function]
[call site]
03763
realloc_bam_data
[function]
[call site]
03764
bgzf_read_small
[function]
[call site]
03765
swap_data
[function]
[call site]
03766
ed_swap_4p
[function]
[call site]
03767
bam_tag2cigar
[function]
[call site]
03768
bam_cigar2rqlens
[function]
[call site]
03769
hts_reg2bin
[function]
[call site]
03770
hts_log
[function]
[call site]
03771
__errno_location
[call site]
03772
sam_read1_cram
[function]
[call site]
03773
cram_get_bam_seq
[function]
[call site]
03774
cram_get_seq
[function]
[call site]
03775
pthread_mutex_lock
[call site]
03776
pthread_mutex_unlock
[call site]
03777
cram_next_slice
[function]
[call site]
03778
cram_first_slice
[function]
[call site]
03779
cram_free_container
[function]
[call site]
03780
cram_read_container
[function]
[call site]
03781
cram_seek
[function]
[call site]
03782
cram_free_container
[function]
[call site]
03783
cram_read_container
[function]
[call site]
03784
cram_read_block
[function]
[call site]
03785
cram_decode_compression_header
[function]
[call site]
03786
calloc
[call site]
03787
cram_uncompress_block
[function]
[call site]
03788
hts_malloc_p
[function]
[call site]
03789
kh_init_map
[function]
[call site]
03790
cram_free_compression_header
[function]
[call site]
03791
cram_free_compression_header
[function]
[call site]
03792
kh_put_map
[function]
[call site]
03793
cram_free_compression_header
[function]
[call site]
03794
kh_put_map
[function]
[call site]
03795
cram_free_compression_header
[function]
[call site]
03796
kh_put_map
[function]
[call site]
03797
cram_free_compression_header
[function]
[call site]
03798
kh_put_map
[function]
[call site]
03799
cram_free_compression_header
[function]
[call site]
03800
cram_free_compression_header
[function]
[call site]
03801
kh_put_map
[function]
[call site]
03802
cram_free_compression_header
[function]
[call site]
03803
cram_decode_TD
[function]
[call site]
03804
cram_new_block
[function]
[call site]
03805
hts_log
[function]
[call site]
03806
cram_free_block
[function]
[call site]
03807
cram_free_block
[function]
[call site]
03808
cram_free_block
[function]
[call site]
03809
block_append
[function]
[call site]
03810
block_append_char
[function]
[call site]
03811
calloc
[call site]
03812
cram_free_block
[function]
[call site]
03813
cram_free_block
[function]
[call site]
03814
cram_free_compression_header
[function]
[call site]
03815
kh_put_map
[function]
[call site]
03816
cram_free_compression_header
[function]
[call site]
03817
hts_log
[function]
[call site]
03818
cram_free_compression_header
[function]
[call site]
03819
cram_free_compression_header
[function]
[call site]
03820
cram_free_compression_header
[function]
[call site]
03821
hts_log
[function]
[call site]
03822
hts_log
[function]
[call site]
03823
cram_decoder_init
[function]
[call site]
03824
cram_encoding2str
[function]
[call site]
03825
hts_log
[function]
[call site]
03826
cram_free_compression_header
[function]
[call site]
03827
cram_free_compression_header
[function]
[call site]
03828
cram_free_compression_header
[function]
[call site]
03829
cram_free_compression_header
[function]
[call site]
03830
cram_decoder_init
[function]
[call site]
03831
cram_free_compression_header
[function]
[call site]
03832
cram_free_compression_header
[function]
[call site]
03833
sam_hrecs_sort_order
[function]
[call site]
03834
TYPEKEY
[function]
[call site]
03835
kh_get_sam_hrecs_t
[function]
[call site]
03836
strcmp
[call site]
03837
strcmp
[call site]
03838
strcmp
[call site]
03839
strcmp
[call site]
03840
hts_log
[function]
[call site]
03841
pthread_mutex_lock
[call site]
03842
pthread_mutex_unlock
[call site]
03843
cram_free_slice
[function]
[call site]
03844
cram_free_container
[function]
[call site]
03845
cram_read_container
[function]
[call site]
03846
cram_free_container
[function]
[call site]
03847
cram_free_container
[function]
[call site]
03848
cram_free_container
[function]
[call site]
03849
cram_free_container
[function]
[call site]
03850
hseek
[function]
[call site]
03851
cram_read_block
[function]
[call site]
03852
cram_decode_compression_header
[function]
[call site]
03853
sam_hrecs_sort_order
[function]
[call site]
03854
pthread_mutex_lock
[call site]
03855
pthread_mutex_unlock
[call site]
03856
cram_free_container
[function]
[call site]
03857
cram_read_slice
[function]
[call site]
03858
cram_read_block
[function]
[call site]
03859
calloc
[call site]
03860
cram_decode_slice_header
[function]
[call site]
03861
cram_uncompress_block
[function]
[call site]
03862
calloc
[call site]
03863
hts_log
[function]
[call site]
03864
hts_malloc_p
[function]
[call site]
03865
cram_content_type2str
[function]
[call site]
03866
hts_log
[function]
[call site]
03867
hts_log
[function]
[call site]
03868
calloc
[call site]
03869
cram_read_block
[function]
[call site]
03870
calloc
[call site]
03871
hts_malloc_p
[function]
[call site]
03872
cram_new_block
[function]
[call site]
03873
cram_new_block
[function]
[call site]
03874
cram_new_block
[function]
[call site]
03875
cram_new_block
[function]
[call site]
03876
cram_new_block
[function]
[call site]
03877
cram_new_block
[function]
[call site]
03878
cram_free_block
[function]
[call site]
03879
cram_free_slice
[function]
[call site]
03880
cram_free_slice
[function]
[call site]
03881
cram_free_slice
[function]
[call site]
03882
cram_free_slice
[function]
[call site]
03883
cram_decode_slice_mt
[function]
[call site]
03884
cram_decode_slice
[function]
[call site]
03885
hts_tpool_process_sz
[function]
[call site]
03886
pthread_mutex_lock
[call site]
03887
pthread_mutex_unlock
[call site]
03888
__errno_location
[call site]
03889
__errno_location
[call site]
03890
hts_tpool_dispatch2
[function]
[call site]
03891
cram_decode_slice_thread
[function]
[call site]
03892
cram_decode_slice
[function]
[call site]
03893
__errno_location
[call site]
03894
__errno_location
[call site]
03895
hts_log
[function]
[call site]
03896
cram_free_slice
[function]
[call site]
03897
hts_tpool_process_len
[function]
[call site]
03898
pthread_mutex_lock
[call site]
03899
pthread_mutex_unlock
[call site]
03900
hts_tpool_process_qsize
[function]
[call site]
03901
hts_tpool_process_empty
[function]
[call site]
03902
hts_tpool_next_result_wait
[function]
[call site]
03903
hts_tpool_result_data
[function]
[call site]
03904
hts_log
[function]
[call site]
03905
hts_tpool_result_data
[function]
[call site]
03906
hts_log
[function]
[call site]
03907
hts_tpool_delete_result
[function]
[call site]
03908
hts_tpool_delete_result
[function]
[call site]
03909
cram_free_slice
[function]
[call site]
03910
cram_free_slice
[function]
[call site]
03911
bam_get_mempolicy
[function]
[call site]
03912
bam_copy1
[function]
[call site]
03913
realloc_bam_data
[function]
[call site]
03914
bam_set_mempolicy
[function]
[call site]
03915
cram_to_bam
[function]
[call site]
03916
cram_eof
[function]
[call site]
03917
sam_read1_sam
[function]
[call site]
03918
sam_parse1
[function]
[call site]
03919
strchr
[call site]
03920
hts_log
[function]
[call site]
03921
hts_log
[function]
[call site]
03922
possibly_expand_bam_data
[function]
[call site]
03923
parse_sam_flag
[function]
[call site]
03924
hts_str2uint
[function]
[call site]
03925
strtoul
[call site]
03926
strchr
[call site]
03927
strcmp
[call site]
03928
hts_log
[function]
[call site]
03929
bam_name2id
[function]
[call site]
03930
sam_hdr_name2tid
[function]
[call site]
03931
sam_hdr_fill_hrecs
[function]
[call site]
03932
kh_get_m_s2i
[function]
[call site]
03933
hts_log
[function]
[call site]
03934
hts_strprint
[function]
[call site]
03935
isprint_c
[function]
[call site]
03936
__ctype_b_loc
[call site]
03937
strcpy
[call site]
03938
snprintf
[call site]
03939
hts_log
[function]
[call site]
03940
hts_str2uint
[function]
[call site]
03941
hts_log
[function]
[call site]
03942
hts_str2uint
[function]
[call site]
03943
bam_parse_cigar
[function]
[call site]
03944
hts_log
[function]
[call site]
03945
read_ncigar
[function]
[call site]
03946
isdigit_c
[function]
[call site]
03947
hts_log
[function]
[call site]
03948
hts_log
[function]
[call site]
03949
possibly_expand_bam_data
[function]
[call site]
03950
hts_log
[function]
[call site]
03951
parse_cigar
[function]
[call site]
03952
hts_str2uint
[function]
[call site]
03953
hts_log
[function]
[call site]
03954
hts_log
[function]
[call site]
03955
hts_log
[function]
[call site]
03956
bam_cigar2rlen
[function]
[call site]
03957
hts_log
[function]
[call site]
03958
strchr
[call site]
03959
hts_log
[function]
[call site]
03960
hts_reg2bin
[function]
[call site]
03961
strchr
[call site]
03962
strcmp
[call site]
03963
strcmp
[call site]
03964
bam_name2id
[function]
[call site]
03965
hts_log
[function]
[call site]
03966
hts_strprint
[function]
[call site]
03967
hts_log
[function]
[call site]
03968
hts_str2uint
[function]
[call site]
03969
hts_log
[function]
[call site]
03970
hts_str2int
[function]
[call site]
03971
hts_log
[function]
[call site]
03972
strchr
[call site]
03973
strcmp
[call site]
03974
hts_log
[function]
[call site]
03975
possibly_expand_bam_data
[function]
[call site]
03976
possibly_expand_bam_data
[function]
[call site]
03977
hts_log
[function]
[call site]
03978
hts_log
[function]
[call site]
03979
aux_parse
[function]
[call site]
03980
hts_log
[function]
[call site]
03981
isspace_c
[function]
[call site]
03982
isspace_c
[function]
[call site]
03983
isspace_c
[function]
[call site]
03984
kh_get_tag
[function]
[call site]
03985
possibly_expand_bam_data
[function]
[call site]
03986
isspace_c
[function]
[call site]
03987
hts_log
[function]
[call site]
03988
possibly_expand_bam_data
[function]
[call site]
03989
hts_str2int
[function]
[call site]
03990
i16_to_le
[function]
[call site]
03991
u16_to_le
[function]
[call site]
03992
i32_to_le
[function]
[call site]
03993
u32_to_le
[function]
[call site]
03994
hts_str2uint
[function]
[call site]
03995
u16_to_le
[function]
[call site]
03996
u32_to_le
[function]
[call site]
03997
strtod
[call site]
03998
float_to_le
[function]
[call site]
03999
u32_to_le
[function]
[call site]
04000
strtod
[call site]
04001
double_to_le
[function]
[call site]
04002
u64_to_le
[function]
[call site]
04003
strchr
[call site]
04004
strlen
[call site]
04005
isspace_c
[function]
[call site]
04006
hts_log
[function]
[call site]
04007
possibly_expand_bam_data
[function]
[call site]
04008
isspace_c
[function]
[call site]
04009
hts_log
[function]
[call site]
04010
sam_parse_B_vals
[function]
[call site]
04011
sam_parse_B_vals_r
[function]
[call site]
04012
hts_log
[function]
[call site]
04013
aux_type2size
[function]
[call site]
04014
hts_log
[function]
[call site]
04015
possibly_expand_bam_data
[function]
[call site]
04016
hts_log
[function]
[call site]
04017
sam_parse_Bc_vals
[function]
[call site]
04018
grow_B_array
[function]
[call site]
04019
__errno_location
[call site]
04020
possibly_expand_bam_data
[function]
[call site]
04021
hts_log
[function]
[call site]
04022
hts_str2int
[function]
[call site]
04023
sam_parse_BC_vals
[function]
[call site]
04024
grow_B_array
[function]
[call site]
04025
hts_str2uint
[function]
[call site]
04026
sam_parse_Bs_vals
[function]
[call site]
04027
grow_B_array
[function]
[call site]
04028
hts_str2int
[function]
[call site]
04029
i16_to_le
[function]
[call site]
04030
sam_parse_BS_vals
[function]
[call site]
04031
grow_B_array
[function]
[call site]
04032
hts_str2uint
[function]
[call site]
04033
u16_to_le
[function]
[call site]
04034
sam_parse_Bi_vals
[function]
[call site]
04035
grow_B_array
[function]
[call site]
04036
hts_str2int
[function]
[call site]
04037
i32_to_le
[function]
[call site]
04038
sam_parse_BI_vals
[function]
[call site]
04039
grow_B_array
[function]
[call site]
04040
hts_str2uint
[function]
[call site]
04041
u32_to_le
[function]
[call site]
04042
sam_parse_Bf_vals
[function]
[call site]
04043
grow_B_array
[function]
[call site]
04044
strtod
[call site]
04045
float_to_le
[function]
[call site]
04046
hts_log
[function]
[call site]
04047
i32_to_le
[function]
[call site]
04048
hts_str2int
[function]
[call site]
04049
sam_parse_B_vals_r
[function]
[call site]
04050
sam_parse_B_vals_r
[function]
[call site]
04051
sam_parse_B_vals_r
[function]
[call site]
04052
sam_parse_B_vals_r
[function]
[call site]
04053
sam_parse_B_vals_r
[function]
[call site]
04054
sam_parse_B_vals_r
[function]
[call site]
04055
isspace_c
[function]
[call site]
04056
hts_strprint
[function]
[call site]
04057
hts_log
[function]
[call site]
04058
isspace_c
[function]
[call site]
04059
hts_log
[function]
[call site]
04060
bam_tag2cigar
[function]
[call site]
04061
bam_cigar2qlen
[function]
[call site]
04062
hts_log
[function]
[call site]
04063
sam_state_destroy
[function]
[call site]
04064
__errno_location
[call site]
04065
bgzf_seek
[function]
[call site]
04066
bgzf_seek_common
[function]
[call site]
04067
sam_hdr_fill_hrecs
[function]
[call site]
04068
pthread_create
[call site]
04069
sam_dispatcher_read
[function]
[call site]
04070
ks_resize
[function]
[call site]
04071
pthread_mutex_lock
[call site]
04072
pthread_cond_signal
[call site]
04073
pthread_mutex_unlock
[call site]
04074
hts_tpool_process_shutdown
[function]
[call site]
04075
pthread_mutex_unlock
[call site]
04076
pthread_mutex_lock
[call site]
04077
pthread_mutex_unlock
[call site]
04078
calloc
[call site]
04079
hts_malloc_ps
[function]
[call site]
04080
hts_realloc_ps
[function]
[call site]
04081
hts_add_sat2
[function]
[call site]
04082
hts_prod_sat2
[function]
[call site]
04083
hts_realloc
[function]
[call site]
04084
bgzf_read
[function]
[call site]
04085
hread
[function]
[call site]
04086
__errno_location
[call site]
04087
sam_state_err
[function]
[call site]
04088
hts_realloc_pse
[function]
[call site]
04089
hts_add_sat2
[function]
[call site]
04090
hts_prod_sat2
[function]
[call site]
04091
hts_add_sat2
[function]
[call site]
04092
hts_realloc
[function]
[call site]
04093
__assert_fail
[call site]
04094
__assert_fail
[call site]
04095
__assert_fail
[call site]
04096
ks_resize
[function]
[call site]
04097
hts_tpool_dispatch3
[function]
[call site]
04098
sam_parse_worker
[function]
[call site]
04099
pthread_mutex_lock
[call site]
04100
pthread_mutex_unlock
[call site]
04101
calloc
[call site]
04102
calloc
[call site]
04103
sam_state_err
[function]
[call site]
04104
sam_state_err
[function]
[call site]
04105
hts_realloc_p
[function]
[call site]
04106
sam_state_err
[function]
[call site]
04107
strchr
[call site]
04108
sam_parse1
[function]
[call site]
04109
__errno_location
[call site]
04110
sam_state_err
[function]
[call site]
04111
cleanup_sp_lines
[function]
[call site]
04112
__assert_fail
[call site]
04113
sam_free_sp_bams
[function]
[call site]
04114
pthread_mutex_lock
[call site]
04115
sam_free_sp_bams
[function]
[call site]
04116
cleanup_sp_lines
[function]
[call site]
04117
cleanup_sp_bams
[function]
[call site]
04118
sam_free_sp_bams
[function]
[call site]
04119
pthread_mutex_lock
[call site]
04120
pthread_mutex_unlock
[call site]
04121
pthread_mutex_unlock
[call site]
04122
hts_tpool_dispatch
[function]
[call site]
04123
sam_parse_eof
[function]
[call site]
04124
pthread_mutex_lock
[call site]
04125
pthread_cond_wait
[call site]
04126
pthread_cond_signal
[call site]
04127
pthread_mutex_unlock
[call site]
04128
hts_tpool_process_shutdown
[function]
[call site]
04129
pthread_mutex_unlock
[call site]
04130
pthread_mutex_lock
[call site]
04131
pthread_cond_signal
[call site]
04132
pthread_mutex_unlock
[call site]
04133
pthread_mutex_lock
[call site]
04134
pthread_mutex_unlock
[call site]
04135
__errno_location
[call site]
04136
sam_state_err
[function]
[call site]
04137
hts_tpool_process_shutdown
[function]
[call site]
04138
hts_log
[function]
[call site]
04139
__errno_location
[call site]
04140
pthread_mutex_lock
[call site]
04141
pthread_mutex_unlock
[call site]
04142
hts_tpool_next_result_wait
[function]
[call site]
04143
hts_tpool_result_data
[function]
[call site]
04144
hts_tpool_delete_result
[function]
[call site]
04145
pthread_mutex_lock
[call site]
04146
pthread_mutex_unlock
[call site]
04147
bam_copy1
[function]
[call site]
04148
pthread_mutex_lock
[call site]
04149
pthread_mutex_unlock
[call site]
04150
hts_getline
[function]
[call site]
04151
sam_parse1
[function]
[call site]
04152
hts_log
[function]
[call site]
04153
fastq_state_init
[function]
[call site]
04154
fastq_parse1
[function]
[call site]
04155
hts_getline
[function]
[call site]
04156
strpbrk
[call site]
04157
isspace_c
[function]
[call site]
04158
isspace_c
[function]
[call site]
04159
hts_getline
[function]
[call site]
04160
kputsn
[function]
[call site]
04161
hts_getline
[function]
[call site]
04162
kputsn
[function]
[call site]
04163
isdigit_c
[function]
[call site]
04164
regexec
[call site]
04165
hts_log
[function]
[call site]
04166
isalpha_c
[function]
[call site]
04167
bam_set1
[function]
[call site]
04168
bam_aux_append
[function]
[call site]
04169
__assert_fail
[call site]
04170
realloc_bam_data
[function]
[call site]
04171
__errno_location
[call site]
04172
isdigit_c
[function]
[call site]
04173
strtol
[call site]
04174
isdigit_c
[function]
[call site]
04175
isspace_c
[function]
[call site]
04176
bam_aux_append
[function]
[call site]
04177
aux_parse
[function]
[call site]
04178
__errno_location
[call site]
04179
__errno_location
[call site]
04180
sam_passes_filter
[function]
[call site]
04181
hts_filter_eval2
[function]
[call site]
04182
ks_free
[function]
[call site]
04183
hts_filter_eval_
[function]
[call site]
04184
expression
[function]
[call site]
04185
hts_log
[function]
[call site]
04186
hts_expr_val_undef
[function]
[call site]
04187
ks_clear
[function]
[call site]
04188
and_expr
[function]
[call site]
04189
eq_expr
[function]
[call site]
04190
cmp_expr
[function]
[call site]
04191
bitor_expr
[function]
[call site]
04192
bitxor_expr
[function]
[call site]
04193
bitand_expr
[function]
[call site]
04194
add_expr
[function]
[call site]
04195
mul_expr
[function]
[call site]
04196
unary_expr
[function]
[call site]
04197
ws
[function]
[call site]
04198
simple_expr
[function]
[call site]
04199
ws
[function]
[call site]
04200
expression
[function]
[call site]
04201
ws
[function]
[call site]
04202
fprintf
[call site]
04203
hts_str2dbl
[function]
[call site]
04204
ks_clear
[function]
[call site]
04208
kputsn
[function]
[call site]
04209
func_expr
[function]
[call site]
04210
strncmp
[call site]
04211
expression
[function]
[call site]
04212
expr_func_avg
[function]
[call site]
04213
strncmp
[call site]
04214
expression
[function]
[call site]
04215
ws
[function]
[call site]
04216
expression
[function]
[call site]
04217
hts_expr_val_free
[function]
[call site]
04218
ks_free
[function]
[call site]
04219
hts_expr_val_existsT
[function]
[call site]
04220
hts_expr_val_exists
[function]
[call site]
04221
hts_expr_val_free
[function]
[call site]
04222
strncmp
[call site]
04223
expression
[function]
[call site]
04224
hts_expr_val_existsT
[function]
[call site]
04225
strncmp
[call site]
04226
expression
[function]
[call site]
04227
exp
[call site]
04228
hts_expr_val_undef
[function]
[call site]
04229
strncmp
[call site]
04230
expression
[function]
[call site]
04231
expr_func_length
[function]
[call site]
04232
strncmp
[call site]
04233
expression
[function]
[call site]
04234
log
[call site]
04235
hts_expr_val_undef
[function]
[call site]
04236
strncmp
[call site]
04237
expression
[function]
[call site]
04238
expr_func_min
[function]
[call site]
04239
strncmp
[call site]
04240
expression
[function]
[call site]
04241
expr_func_max
[function]
[call site]
04242
strncmp
[call site]
04243
expression
[function]
[call site]
04244
ws
[function]
[call site]
04245
expression
[function]
[call site]
04246
hts_expr_val_free
[function]
[call site]
04247
hts_expr_val_exists
[function]
[call site]
04248
hts_expr_val_undef
[function]
[call site]
04249
hts_expr_val_free
[function]
[call site]
04250
hts_expr_val_free
[function]
[call site]
04251
pow
[call site]
04252
hts_expr_val_free
[function]
[call site]
04253
hts_expr_val_undef
[function]
[call site]
04254
strncmp
[call site]
04255
expression
[function]
[call site]
04256
sqrt
[call site]
04257
hts_expr_val_undef
[function]
[call site]
04258
ws
[function]
[call site]
04259
fprintf
[call site]
04260
hts_expr_val_exists
[function]
[call site]
04261
hts_expr_val_undef
[function]
[call site]
04262
unary_expr
[function]
[call site]
04263
hts_expr_val_exists
[function]
[call site]
04264
IS_VALID
[function]
[call site]
04265
hts_expr_val_undef
[function]
[call site]
04266
unary_expr
[function]
[call site]
04267
hts_expr_val_exists
[function]
[call site]
04268
hts_expr_val_undef
[function]
[call site]
04269
hts_expr_val_exists
[function]
[call site]
04270
hts_expr_val_undef
[function]
[call site]
04271
IS_VALID
[function]
[call site]
04272
hts_expr_val_undef
[function]
[call site]
04273
simple_expr
[function]
[call site]
04274
ws
[function]
[call site]
04275
unary_expr
[function]
[call site]
04276
hts_expr_val_free
[function]
[call site]
04277
hts_expr_val_exists
[function]
[call site]
04278
hts_expr_val_undef
[function]
[call site]
04279
hts_expr_val_free
[function]
[call site]
04280
IS_VALID
[function]
[call site]
04281
hts_expr_val_undef
[function]
[call site]
04282
hts_expr_val_exists
[function]
[call site]
04283
hts_expr_val_free
[function]
[call site]
04284
ws
[function]
[call site]
04285
mul_expr
[function]
[call site]
04286
hts_expr_val_free
[function]
[call site]
04287
hts_expr_val_exists
[function]
[call site]
04288
hts_expr_val_free
[function]
[call site]
04289
hts_expr_val_undef
[function]
[call site]
04290
hts_expr_val_free
[function]
[call site]
04291
ws
[function]
[call site]
04292
add_expr
[function]
[call site]
04293
hts_expr_val_free
[function]
[call site]
04294
hts_expr_val_exists
[function]
[call site]
04295
hts_expr_val_free
[function]
[call site]
04296
IS_VALID
[function]
[call site]
04297
hts_expr_val_undef
[function]
[call site]
04298
hts_expr_val_free
[function]
[call site]
04299
hts_expr_val_free
[function]
[call site]
04300
hts_expr_val_undef
[function]
[call site]
04301
ws
[function]
[call site]
04302
bitand_expr
[function]
[call site]
04303
hts_expr_val_free
[function]
[call site]
04304
hts_expr_val_exists
[function]
[call site]
04305
hts_expr_val_free
[function]
[call site]
04306
IS_VALID
[function]
[call site]
04307
hts_expr_val_undef
[function]
[call site]
04308
hts_expr_val_free
[function]
[call site]
04309
hts_expr_val_free
[function]
[call site]
04310
hts_expr_val_undef
[function]
[call site]
04311
ws
[function]
[call site]
04312
bitxor_expr
[function]
[call site]
04313
hts_expr_val_free
[function]
[call site]
04314
hts_expr_val_exists
[function]
[call site]
04315
hts_expr_val_free
[function]
[call site]
04316
IS_VALID
[function]
[call site]
04317
hts_expr_val_undef
[function]
[call site]
04318
hts_expr_val_free
[function]
[call site]
04319
hts_expr_val_free
[function]
[call site]
04320
hts_expr_val_undef
[function]
[call site]
04321
ws
[function]
[call site]
04322
cmp_expr
[function]
[call site]
04323
hts_expr_val_exists
[function]
[call site]
04324
hts_expr_val_undef
[function]
[call site]
04325
strcmp
[call site]
04326
cmp_expr
[function]
[call site]
04327
hts_expr_val_exists
[function]
[call site]
04328
hts_expr_val_undef
[function]
[call site]
04329
strcmp
[call site]
04330
cmp_expr
[function]
[call site]
04331
hts_expr_val_exists
[function]
[call site]
04332
hts_expr_val_undef
[function]
[call site]
04333
strcmp
[call site]
04334
cmp_expr
[function]
[call site]
04335
hts_expr_val_exists
[function]
[call site]
04336
hts_expr_val_undef
[function]
[call site]
04337
strcmp
[call site]
04338
hts_expr_val_exists
[function]
[call site]
04339
hts_expr_val_undef
[function]
[call site]
04340
hts_expr_val_free
[function]
[call site]
04341
ws
[function]
[call site]
04342
eq_expr
[function]
[call site]
04343
hts_expr_val_exists
[function]
[call site]
04344
hts_expr_val_undef
[function]
[call site]
04345
strcmp
[call site]
04346
eq_expr
[function]
[call site]
04347
hts_expr_val_exists
[function]
[call site]
04348
hts_expr_val_undef
[function]
[call site]
04349
strcmp
[call site]
04350
eq_expr
[function]
[call site]
04351
hts_expr_val_free
[function]
[call site]
04352
regcomp
[call site]
04353
regerror
[call site]
04354
fprintf
[call site]
04355
hts_expr_val_undef
[function]
[call site]
04356
hts_expr_val_free
[function]
[call site]
04357
regexec
[call site]
04358
regfree
[call site]
04359
hts_expr_val_exists
[function]
[call site]
04360
hts_expr_val_undef
[function]
[call site]
04361
hts_expr_val_free
[function]
[call site]
04362
ws
[function]
[call site]
04363
eq_expr
[function]
[call site]
04364
hts_expr_val_free
[function]
[call site]
04365
hts_expr_val_existsT
[function]
[call site]
04366
hts_expr_val_undef
[function]
[call site]
04367
eq_expr
[function]
[call site]
04368
hts_expr_val_free
[function]
[call site]
04369
hts_expr_val_existsT
[function]
[call site]
04370
hts_expr_val_undef
[function]
[call site]
04371
hts_expr_val_existsT
[function]
[call site]
04372
hts_expr_val_undef
[function]
[call site]
04373
hts_expr_val_existsT
[function]
[call site]
04374
hts_expr_val_undef
[function]
[call site]
04375
hts_expr_val_free
[function]
[call site]
04376
ws
[function]
[call site]
04377
fprintf
[call site]
04378
hts_expr_val_exists
[function]
[call site]
04379
bam_sym_lookup
[function]
[call site]
04380
memcmp
[call site]
04381
ks_clear
[function]
[call site]
04382
kputw
[function]
[call site]
04383
kputc_
[function]
[call site]
04384
kputs
[function]
[call site]
04385
kputs
[function]
[call site]
04386
memcmp
[call site]
04387
bam_endpos
[function]
[call site]
04388
memcmp
[call site]
04389
memcmp
[call site]
04390
memcmp
[call site]
04391
memcmp
[call site]
04392
memcmp
[call site]
04393
memcmp
[call site]
04394
memcmp
[call site]
04395
memcmp
[call site]
04396
memcmp
[call site]
04397
memcmp
[call site]
04398
memcmp
[call site]
04399
memcmp
[call site]
04400
memcmp
[call site]
04401
hts_log
[function]
[call site]
04402
memcmp
[call site]
04403
memcmp
[call site]
04404
bam_get_library
[function]
[call site]
04405
bam_aux_getZ
[function]
[call site]
04406
bam_aux_get
[function]
[call site]
04407
sam_hdr_find_tag_id
[function]
[call site]
04408
ks_clear
[function]
[call site]
04409
kputs
[function]
[call site]
04410
memcmp
[call site]
04411
memcmp
[call site]
04412
memcmp
[call site]
04413
sam_hdr_tid2name
[function]
[call site]
04414
ks_clear
[function]
[call site]
04415
kputs
[function]
[call site]
04416
memcmp
[call site]
04417
memcmp
[call site]
04418
memcmp
[call site]
04419
memcmp
[call site]
04420
memcmp
[call site]
04421
bam_cigar2qlen
[function]
[call site]
04422
memcmp
[call site]
04423
ks_clear
[function]
[call site]
04424
kputs
[function]
[call site]
04425
memcmp
[call site]
04426
ks_clear
[function]
[call site]
04427
ks_resize
[function]
[call site]
04428
memcmp
[call site]
04429
bam_cigar2rlen
[function]
[call site]
04430
memcmp
[call site]
04431
sam_hdr_tid2name
[function]
[call site]
04432
ks_clear
[function]
[call site]
04433
kputs
[function]
[call site]
04434
memcmp
[call site]
04435
sam_hdr_tid2name
[function]
[call site]
04436
ks_clear
[function]
[call site]
04437
kputs
[function]
[call site]
04438
memcmp
[call site]
04439
memcmp
[call site]
04440
ks_clear
[function]
[call site]
04441
ks_resize
[function]
[call site]
04442
nibble2base
[function]
[call site]
04443
memcmp
[call site]
04444
memcmp
[call site]
04445
bam_aux_get
[function]
[call site]
04446
ks_clear
[function]
[call site]
04447
kputs
[function]
[call site]
04448
ks_clear
[function]
[call site]
04449
kputsn
[function]
[call site]
04450
bam_aux2i
[function]
[call site]
04451
get_int_aux_val
[function]
[call site]
04452
le_to_i8
[function]
[call site]
04453
le_to_i16
[function]
[call site]
04454
le_to_u16
[function]
[call site]
04455
le_to_i32
[function]
[call site]
04456
le_to_u32
[function]
[call site]
04457
__errno_location
[call site]
04458
bam_aux2f
[function]
[call site]
04459
le_to_double
[function]
[call site]
04460
le_to_float
[function]
[call site]
04461
get_int_aux_val
[function]
[call site]
04462
hts_log
[function]
[call site]
04463
hts_log
[function]
[call site]
04464
hts_expr_val_free
[function]
[call site]
04465
hts_expr_val_free
[function]
[call site]
04466
sam_write1
[function]
[call site]
04467
bam_write_idx1
[function]
[call site]
04468
bam_write1
[function]
[call site]
04469
hts_log
[function]
[call site]
04470
__errno_location
[call site]
04471
hts_log
[function]
[call site]
04472
bgzf_flush_try
[function]
[call site]
04473
lazy_flush
[function]
[call site]
04474
ed_swap_4p
[function]
[call site]
04475
ed_swap_4p
[function]
[call site]
04476
bgzf_write_small
[function]
[call site]
04477
bgzf_write
[function]
[call site]
04478
swap_data
[function]
[call site]
04479
bgzf_write_small
[function]
[call site]
04480
bgzf_write_small
[function]
[call site]
04481
bgzf_write_small
[function]
[call site]
04482
bgzf_write_small
[function]
[call site]
04483
bam_cigar2rlen
[function]
[call site]
04484
u32_to_le
[function]
[call site]
04485
u32_to_le
[function]
[call site]
04486
bgzf_write_small
[function]
[call site]
04487
bgzf_write_small
[function]
[call site]
04488
bgzf_write_small
[function]
[call site]
04489
u32_to_le
[function]
[call site]
04490
bgzf_write_small
[function]
[call site]
04491
bgzf_write_small
[function]
[call site]
04492
swap_data
[function]
[call site]
04493
bgzf_flush_try
[function]
[call site]
04494
hts_idx_amend_last
[function]
[call site]
04495
bam_write1
[function]
[call site]
04496
bam_endpos
[function]
[call site]
04497
bgzf_idx_push
[function]
[call site]
04498
hts_idx_push
[function]
[call site]
04499
hts_idx_check_range
[function]
[call site]
04500
hts_idx_maxpos
[function]
[call site]
04501
hts_bin_maxpos
[function]
[call site]
04502
hts_log
[function]
[call site]
04503
idx_format_name
[function]
[call site]
04504
hts_log
[function]
[call site]
04505
__errno_location
[call site]
04506
hts_realloc_p
[function]
[call site]
04507
hts_realloc_p
[function]
[call site]
04508
hts_log
[function]
[call site]
04509
hts_log
[function]
[call site]
04510
hts_log
[function]
[call site]
04511
hts_log
[function]
[call site]
04512
kh_init_bin
[function]
[call site]
04513
calloc
[call site]
04514
insert_to_l
[function]
[call site]
04515
hts_realloc_p
[function]
[call site]
04516
hts_reg2bin
[function]
[call site]
04517
insert_to_b
[function]
[call site]
04518
kh_put_bin
[function]
[call site]
04519
kh_resize_bin
[function]
[call site]
04520
__errno_location
[call site]
04521
realloc
[call site]
04522
calloc
[call site]
04523
kh_del_bin
[function]
[call site]
04524
hts_realloc_p
[function]
[call site]
04525
insert_to_b
[function]
[call site]
04526
insert_to_b
[function]
[call site]
04527
hts_idx_check_range
[function]
[call site]
04528
pthread_mutex_lock
[call site]
04529
hts_realloc_p
[function]
[call site]
04530
pthread_mutex_unlock
[call site]
04531
pthread_mutex_unlock
[call site]
04532
sam_hdr_tid2name
[function]
[call site]
04533
sam_hdr_tid2len
[function]
[call site]
04534
kh_get_s2i
[function]
[call site]
04535
hts_log
[function]
[call site]
04536
cram_put_bam_seq
[function]
[call site]
04537
hts_log
[function]
[call site]
04538
__errno_location
[call site]
04539
cram_new_container
[function]
[call site]
04540
pthread_mutex_lock
[call site]
04541
pthread_mutex_unlock
[call site]
04542
hts_log
[function]
[call site]
04543
pthread_mutex_lock
[call site]
04544
hts_log
[function]
[call site]
04545
pthread_mutex_unlock
[call site]
04546
cram_next_container
[function]
[call site]
04547
cram_update_curr_slice
[function]
[call site]
04548
hts_log
[function]
[call site]
04549
cram_flush_container_mt
[function]
[call site]
04550
cram_free_slice
[function]
[call site]
04551
cram_free_container
[function]
[call site]
04552
cram_new_container
[function]
[call site]
04553
pthread_mutex_lock
[call site]
04554
cram_new_slice
[function]
[call site]
04555
calloc
[call site]
04556
calloc
[call site]
04557
hts_malloc_p
[function]
[call site]
04558
hts_malloc_p
[function]
[call site]
04559
cram_new_block
[function]
[call site]
04560
cram_new_block
[function]
[call site]
04561
cram_new_block
[function]
[call site]
04562
cram_new_block
[function]
[call site]
04563
cram_new_block
[function]
[call site]
04564
cram_new_block
[function]
[call site]
04565
string_pool_create
[function]
[call site]
04566
kh_init_m_s2i
[function]
[call site]
04567
kh_init_m_s2i
[function]
[call site]
04568
cram_free_slice
[function]
[call site]
04569
pthread_mutex_lock
[call site]
04570
hts_log
[function]
[call site]
04571
pthread_mutex_unlock
[call site]
04572
pthread_mutex_lock
[call site]
04573
calloc
[call site]
04574
pthread_mutex_unlock
[call site]
04575
pthread_mutex_lock
[call site]
04576
calloc
[call site]
04577
pthread_mutex_unlock
[call site]
04578
pthread_mutex_lock
[call site]
04579
pthread_mutex_unlock
[call site]
04580
pthread_mutex_lock
[call site]
04581
hts_realloc_p
[function]
[call site]
04582
pthread_mutex_unlock
[call site]
04583
bam_set_mempolicy
[function]
[call site]
04584
calloc
[call site]
04585
pthread_mutex_unlock
[call site]
04586
bam_set_mempolicy
[function]
[call site]
04587
pthread_mutex_unlock
[call site]
04588
bam_copy1
[function]
[call site]
04589
bam_cigar2qlen
[function]
[call site]
04590
hts_log
[function]
[call site]
04591
pthread_create
[call site]
04592
sam_dispatcher_write
[function]
[call site]
04593
hts_tpool_next_result_wait
[function]
[call site]
04594
hts_tpool_result_data
[function]
[call site]
04595
sam_state_err
[function]
[call site]
04596
bgzf_flush_try
[function]
[call site]
04597
bgzf_write
[function]
[call site]
04598
hwrite
[function]
[call site]
04599
bam_endpos
[function]
[call site]
04600
bgzf_idx_push
[function]
[call site]
04601
__errno_location
[call site]
04602
sam_state_err
[function]
[call site]
04603
sam_hdr_tid2name
[function]
[call site]
04604
sam_hdr_tid2len
[function]
[call site]
04605
hts_log
[function]
[call site]
04606
bam_endpos
[function]
[call site]
04607
hts_idx_push
[function]
[call site]
04608
__errno_location
[call site]
04609
sam_state_err
[function]
[call site]
04610
sam_hdr_tid2name
[function]
[call site]
04611
sam_hdr_tid2len
[function]
[call site]
04612
hts_log
[function]
[call site]
04613
__assert_fail
[call site]
04614
pthread_mutex_lock
[call site]
04615
pthread_mutex_unlock
[call site]
04616
bgzf_write
[function]
[call site]
04617
bgzf_flush_try
[function]
[call site]
04618
bgzf_write
[function]
[call site]
04619
hwrite
[function]
[call site]
04620
hts_tpool_delete_result
[function]
[call site]
04621
pthread_mutex_lock
[call site]
04622
pthread_mutex_unlock
[call site]
04623
sam_state_err
[function]
[call site]
04624
hts_tpool_process_shutdown
[function]
[call site]
04625
__errno_location
[call site]
04626
sam_state_err
[function]
[call site]
04627
hts_log
[function]
[call site]
04628
pthread_mutex_lock
[call site]
04629
pthread_mutex_unlock
[call site]
04630
pthread_mutex_unlock
[call site]
04631
calloc
[call site]
04632
calloc
[call site]
04633
bam_copy1
[function]
[call site]
04634
pthread_mutex_lock
[call site]
04635
pthread_mutex_unlock
[call site]
04636
hts_tpool_dispatch3
[function]
[call site]
04637
sam_format_worker
[function]
[call site]
04638
cleanup_sp_bams
[function]
[call site]
04639
cleanup_sp_lines
[function]
[call site]
04640
pthread_mutex_unlock
[call site]
04641
pthread_mutex_unlock
[call site]
04642
sam_format1
[function]
[call site]
04643
sam_format1_append
[function]
[call site]
04644
kputc
[function]
[call site]
04645
bgzf_flush_try
[function]
[call site]
04646
bgzf_write
[function]
[call site]
04647
hwrite
[function]
[call site]
04648
bam_endpos
[function]
[call site]
04649
bgzf_idx_push
[function]
[call site]
04650
sam_hdr_tid2name
[function]
[call site]
04651
sam_hdr_tid2len
[function]
[call site]
04652
hts_log
[function]
[call site]
04653
bam_endpos
[function]
[call site]
04654
hts_idx_push
[function]
[call site]
04655
sam_hdr_tid2name
[function]
[call site]
04656
sam_hdr_tid2len
[function]
[call site]
04657
hts_log
[function]
[call site]
04658
fastq_state_init
[function]
[call site]
04659
fastq_format1
[function]
[call site]
04660
kputc
[function]
[call site]
04661
kputs
[function]
[call site]
04662
bam_aux_getZ
[function]
[call site]
04663
kputc
[function]
[call site]
04664
isalpha_c
[function]
[call site]
04665
toupper_c
[function]
[call site]
04666
kputc
[function]
[call site]
04667
kputs
[function]
[call site]
04668
kputs
[function]
[call site]
04669
kputs
[function]
[call site]
04670
bam_aux_getZ
[function]
[call site]
04671
ksprintf
[function]
[call site]
04672
isupper_c
[function]
[call site]
04673
__ctype_b_loc
[call site]
04674
islower_c
[function]
[call site]
04675
__ctype_b_loc
[call site]
04676
hts_log
[function]
[call site]
04677
strlen
[call site]
04678
strlen
[call site]
04679
isalpha_c
[function]
[call site]
04680
islower_c
[function]
[call site]
04681
toupper_c
[function]
[call site]
04682
kh_get_tag
[function]
[call site]
04683
kputc_
[function]
[call site]
04684
sam_format_aux1
[function]
[call site]
04685
skip_aux
[function]
[call site]
04686
kputsn
[function]
[call site]
04687
ks_resize
[function]
[call site]
04688
kputc_
[function]
[call site]
04689
kputc_
[function]
[call site]
04690
kputc_
[function]
[call site]
04691
kputsn
[function]
[call site]
04692
kputc_
[function]
[call site]
04693
kputc_
[function]
[call site]
04694
kputc_
[function]
[call site]
04695
kputc
[function]
[call site]
04696
bgzf_flush_try
[function]
[call site]
04697
bgzf_write
[function]
[call site]
04698
hwrite
[function]
[call site]
04699
__errno_location
[call site]
04700
bam_destroy1
[function]
[call site]
04701
sam_hdr_destroy
[function]
[call site]
04702
hts_close_or_abort
[function]
[call site]
04703
hts_close
[function]
[call site]
04704
hts_close
[function]
[call site]
04705
view_sam
[function]
[call site]
04706
view_sam
[function]
[call site]
04707
view_vcf
[function]
[call site]
04708
abort
[call site]
04709
hopen
[function]
[call site]
04710
hts_hopen
[function]
[call site]
04711
hclose
[function]
[call site]
04712
abort
[call site]
04713
hts_open
[function]
[call site]
04714
abort
[call site]
04715
bcf_hdr_read
[function]
[call site]
04716
vcf_hdr_read
[function]
[call site]
04717
bcf_hdr_init
[function]
[call site]
04718
calloc
[call site]
04719
kh_init_vdict
[function]
[call site]
04720
calloc
[call site]
04721
kh_resize_vdict
[function]
[call site]
04722
__errno_location
[call site]
04723
realloc
[call site]
04724
__ac_FNV1a_hash_string
[function]
[call site]
04725
calloc
[call site]
04726
kh_init_hdict
[function]
[call site]
04727
strchr
[call site]
04728
bcf_hdr_append
[function]
[call site]
04729
bcf_hdr_parse_line
[function]
[call site]
04730
calloc
[call site]
04731
hts_malloc_ps
[function]
[call site]
04732
hts_malloc_p
[function]
[call site]
04733
isalpha_c
[function]
[call site]
04734
isalnum_c
[function]
[call site]
04735
bcf_hrec_add_key
[function]
[call site]
04736
__assert_fail
[call site]
04737
hts_realloc_p
[function]
[call site]
04738
hts_realloc_p
[function]
[call site]
04739
hts_malloc_ps
[function]
[call site]
04740
is_escaped
[function]
[call site]
04741
bcf_hrec_set_val
[function]
[call site]
04742
__errno_location
[call site]
04743
hts_malloc_ps
[function]
[call site]
04744
__errno_location
[call site]
04745
hts_malloc_ps
[function]
[call site]
04746
isspace_c
[function]
[call site]
04747
hts_strprint
[function]
[call site]
04748
hts_log
[function]
[call site]
04749
bcf_hrec_destroy
[function]
[call site]
04750
hts_strprint
[function]
[call site]
04751
bcf_hrec_destroy
[function]
[call site]
04752
bcf_hdr_add_hrec
[function]
[call site]
04753
get_hdr_aux
[function]
[call site]
04754
bcf_hrec_check
[function]
[call site]
04755
bcf_hrec_set_type
[function]
[call site]
04756
strcmp
[call site]
04757
strcmp
[call site]
04758
strcmp
[call site]
04759
strcmp
[call site]
04760
bcf_hrec_find_key
[function]
[call site]
04761
strcasecmp
[call site]
04762
bcf_hrec_find_key
[function]
[call site]
04763
strcmp
[call site]
04764
bcf_hrec_find_key
[function]
[call site]
04765
hts_log
[function]
[call site]
04766
hts_log
[function]
[call site]
04767
hts_log
[function]
[call site]
04768
bcf_hdr_register_hrec
[function]
[call site]
04769
bcf_hrec_set_type
[function]
[call site]
04770
bcf_hdr_register_hrec_ctg
[function]
[call site]
04771
bcf_hrec_find_key
[function]
[call site]
04772
bcf_hrec_find_key
[function]
[call site]
04773
strtoll
[call site]
04774
hts_log
[function]
[call site]
04775
strdup
[call site]
04776
kh_get_vdict
[function]
[call site]
04777
strcmp
[call site]
04778
kh_put_vdict
[function]
[call site]
04779
kh_resize_vdict
[function]
[call site]
04780
bcf_hrec_find_key
[function]
[call site]
04781
strtol
[call site]
04782
kh_del_vdict
[function]
[call site]
04783
hts_log
[function]
[call site]
04784
bcf_hdr_set_idx
[function]
[call site]
04785
hts_log
[function]
[call site]
04786
__errno_location
[call site]
04787
hts_resize_array_
[function]
[call site]
04788
hts_log
[function]
[call site]
04789
__errno_location
[call site]
04790
realloc
[call site]
04791
__errno_location
[call site]
04792
__errno_location
[call site]
04793
strerror
[call site]
04794
hts_log
[function]
[call site]
04795
__errno_location
[call site]
04796
abort
[call site]
04797
abort
[call site]
04798
kh_del_vdict
[function]
[call site]
04799
hrec_add_idx
[function]
[call site]
04800
hts_realloc_p
[function]
[call site]
04801
hts_realloc_p
[function]
[call site]
04802
strdup
[call site]
04803
kputw
[function]
[call site]
04804
bcf_hdr_register_hrec_info
[function]
[call site]
04805
strcmp
[call site]
04806
strcmp
[call site]
04807
strtol
[call site]
04808
hts_log
[function]
[call site]
04809
strcmp
[call site]
04810
strcmp
[call site]
04811
strcmp
[call site]
04812
strcmp
[call site]
04813
strcmp
[call site]
04814
strcmp
[call site]
04815
hts_log
[function]
[call site]
04816
strcmp
[call site]
04817
strcmp
[call site]
04818
strcmp
[call site]
04819
strcmp
[call site]
04820
strcmp
[call site]
04821
strcmp
[call site]
04822
strcmp
[call site]
04823
strcmp
[call site]
04824
strcmp
[call site]
04825
strcmp
[call site]
04826
__isoc99_sscanf
[call site]
04827
hts_log
[function]
[call site]
04828
strdup
[call site]
04829
kh_get_vdict
[function]
[call site]
04830
strcmp
[call site]
04831
hrec_add_idx
[function]
[call site]
04832
hrec_add_idx
[function]
[call site]
04833
kh_put_vdict
[function]
[call site]
04834
bcf_hdr_set_idx
[function]
[call site]
04835
kh_del_vdict
[function]
[call site]
04836
hrec_add_idx
[function]
[call site]
04837
bcf_hrec_destroy
[function]
[call site]
04838
ksprintf
[function]
[call site]
04839
kh_get_hdict
[function]
[call site]
04840
bcf_hrec_destroy
[function]
[call site]
04841
bcf_get_version
[function]
[call site]
04842
get_hdr_aux
[function]
[call site]
04843
bcf_hdr_get_version
[function]
[call site]
04844
bcf_hdr_get_hrec
[function]
[call site]
04845
ksprintf
[function]
[call site]
04846
get_hdr_aux
[function]
[call site]
04847
kh_get_hdict
[function]
[call site]
04848
strcmp
[call site]
04849
ksprintf
[function]
[call site]
04850
get_hdr_aux
[function]
[call site]
04851
kh_get_hdict
[function]
[call site]
04852
strcmp
[call site]
04853
bcf_hrec_find_key
[function]
[call site]
04854
strcmp
[call site]
04855
kh_get_vdict
[function]
[call site]
04856
hts_log
[function]
[call site]
04857
strstr
[call site]
04858
strchr
[call site]
04859
strtol
[call site]
04860
__errno_location
[call site]
04861
strtol
[call site]
04862
__errno_location
[call site]
04863
hts_log
[function]
[call site]
04864
bcf_hrec_find_key
[function]
[call site]
04865
ksprintf
[function]
[call site]
04866
kh_get_hdict
[function]
[call site]
04867
bcf_hrec_destroy
[function]
[call site]
04868
hts_realloc_p
[function]
[call site]
04869
bcf_hdr_unregister_hrec
[function]
[call site]
04870
bcf_hrec_find_key
[function]
[call site]
04871
kh_get_vdict
[function]
[call site]
04872
kh_put_hdict
[function]
[call site]
04873
kh_resize_hdict
[function]
[call site]
04874
bcf_hdr_append
[function]
[call site]
04875
kh_destroy_vdict
[function]
[call site]
04876
hts_log
[function]
[call site]
04877
hts_getline
[function]
[call site]
04878
hopen
[function]
[call site]
04879
hts_log
[function]
[call site]
04880
khgetline
[function]
[call site]
04881
strchr
[call site]
04882
kputs
[function]
[call site]
04883
kputsn
[function]
[call site]
04884
kputs
[function]
[call site]
04885
atol
[call site]
04886
kputl
[function]
[call site]
04887
kputll
[function]
[call site]
04888
kputsn
[function]
[call site]
04889
hclose
[function]
[call site]
04890
hts_log
[function]
[call site]
04891
kputsn
[function]
[call site]
04892
kputc
[function]
[call site]
04893
hts_log
[function]
[call site]
04894
bcf_hdr_parse
[function]
[call site]
04895
bcf_hdr_parse_line
[function]
[call site]
04896
strcasecmp
[call site]
04897
hts_log
[function]
[call site]
04898
bcf_hdr_add_hrec
[function]
[call site]
04899
bcf_hrec_destroy
[function]
[call site]
04900
bcf_hdr_parse_line
[function]
[call site]
04901
bcf_hdr_add_hrec
[function]
[call site]
04902
bcf_hrec_destroy
[function]
[call site]
04903
bcf_hdr_parse_line
[function]
[call site]
04904
bcf_hdr_add_hrec
[function]
[call site]
04905
bcf_hrec_destroy
[function]
[call site]
04906
__assert_fail
[call site]
04907
__errno_location
[call site]
04908
strerror
[call site]
04909
hts_log
[function]
[call site]
04910
strncmp
[call site]
04911
strchr
[call site]
04912
hts_strprint
[function]
[call site]
04913
hts_log
[function]
[call site]
04914
hts_log
[function]
[call site]
04915
bcf_hdr_parse_sample_line
[function]
[call site]
04916
strlen
[call site]
04917
strncmp
[call site]
04918
hts_log
[function]
[call site]
04919
strlen
[call site]
04920
strncmp
[call site]
04921
hts_log
[function]
[call site]
04922
bcf_hdr_add_sample_len
[function]
[call site]
04923
isspace_c
[function]
[call site]
04924
hts_log
[function]
[call site]
04925
hts_realloc_ps
[function]
[call site]
04926
kh_put_vdict
[function]
[call site]
04927
hts_log
[function]
[call site]
04928
bcf_hdr_sync
[function]
[call site]
04929
hts_realloc_p
[function]
[call site]
04930
get_hdr_aux
[function]
[call site]
04931
bcf_hdr_check_sanity
[function]
[call site]
04932
bcf_get_version
[function]
[call site]
04933
bcf_hdr_id2int
[function]
[call site]
04934
kh_get_vdict
[function]
[call site]
04935
atoi
[call site]
04936
hts_log
[function]
[call site]
04937
hts_log
[function]
[call site]
04938
bcf_hdr_id2int
[function]
[call site]
04939
atoi
[call site]
04940
hts_log
[function]
[call site]
04941
hts_log
[function]
[call site]
04942
tbx_index_load3
[function]
[call site]
04943
index_load
[function]
[call site]
04944
calloc
[call site]
04945
hts_idx_load3
[function]
[call site]
04946
idx_find_and_load
[function]
[call site]
04947
strstr
[call site]
04948
strdup
[call site]
04949
__errno_location
[call site]
04950
strerror
[call site]
04951
hts_log
[function]
[call site]
04952
hts_idx_load3
[function]
[call site]
04953
hisremote
[function]
[call site]
04954
stat
[call site]
04955
hts_log
[function]
[call site]
04956
idx_test_and_fetch
[function]
[call site]
04957
hisremote
[function]
[call site]
04958
strncmp
[call site]
04959
strcspn
[call site]
04960
kputsn
[function]
[call site]
04961
access
[call site]
04962
hopen
[function]
[call site]
04963
hts_log
[function]
[call site]
04964
hts_detect_format2
[function]
[call site]
04965
hts_log
[function]
[call site]
04966
hts_log
[function]
[call site]
04967
hts_open_tmpfile
[function]
[call site]
04968
hts_log
[function]
[call site]
04969
hts_log
[function]
[call site]
04970
calloc
[call site]
04971
__errno_location
[call site]
04972
strerror
[call site]
04973
hts_log
[function]
[call site]
04974
hread
[function]
[call site]
04975
hwrite
[function]
[call site]
04976
__errno_location
[call site]
04977
strerror
[call site]
04978
hts_log
[function]
[call site]
04979
hts_log
[function]
[call site]
04980
hclose
[function]
[call site]
04981
__errno_location
[call site]
04982
strerror
[call site]
04983
hts_log
[function]
[call site]
04984
rename
[call site]
04985
strerror
[call site]
04986
hts_log
[function]
[call site]
04987
ks_clear
[function]
[call site]
04988
hclose
[function]
[call site]
04989
hts_log
[function]
[call site]
04990
hopen
[function]
[call site]
04991
hclose_abruptly
[function]
[call site]
04992
strlen
[call site]
04993
__errno_location
[call site]
04994
hclose_abruptly
[function]
[call site]
04995
hclose_abruptly
[function]
[call site]
04996
unlink
[call site]
04997
__errno_location
[call site]
04998
strdup
[call site]
04999
idx_read
[function]
[call site]
05000
bgzf_open
[function]
[call site]
05001
ed_is_big
[function]
[call site]
05002
bgzf_read
[function]
[call site]
05003
memcmp
[call site]
05004
bgzf_read
[function]
[call site]
05005
ed_swap_4p
[function]
[call site]
05006
hts_malloc_ps
[function]
[call site]
05007
bgzf_read
[function]
[call site]
05008
bgzf_read
[function]
[call site]
05009
ed_swap_4p
[function]
[call site]
05010
hts_idx_init
[function]
[call site]
05011
idx_read_core
[function]
[call site]
05015
ed_is_big
[function]
[call site]
05016
kh_init_bin
[function]
[call site]
05017
bgzf_read
[function]
[call site]
05018
ed_swap_4p
[function]
[call site]
05019
bgzf_read
[function]
[call site]
05020
ed_swap_4p
[function]
[call site]
05021
kh_put_bin
[function]
[call site]
05022
bgzf_read
[function]
[call site]
05023
ed_swap_8p
[function]
[call site]
05024
bgzf_read
[function]
[call site]
05025
ed_swap_4p
[function]
[call site]
05026
hts_malloc_p
[function]
[call site]
05027
bgzf_read
[function]
[call site]
05028
swap_bins
[function]
[call site]
05029
ed_swap_8p
[function]
[call site]
05030
ed_swap_8p
[function]
[call site]
05031
bgzf_read
[function]
[call site]
05032
ed_swap_4p
[function]
[call site]
05033
hts_malloc_p
[function]
[call site]
05034
bgzf_read
[function]
[call site]
05035
ed_swap_8p
[function]
[call site]
05036
update_loff
[function]
[call site]
05037
hts_bin_bot
[function]
[call site]
05038
hts_bin_level
[function]
[call site]
05039
bgzf_read
[function]
[call site]
05040
ed_swap_8p
[function]
[call site]
05041
memcmp
[call site]
05042
bgzf_read
[function]
[call site]
05043
le_to_u32
[function]
[call site]
05044
hts_idx_init
[function]
[call site]
05045
le_to_u32
[function]
[call site]
05046
hts_malloc_ps
[function]
[call site]
05047
bgzf_read
[function]
[call site]
05048
idx_read_core
[function]
[call site]
05049
memcmp
[call site]
05050
bgzf_read
[function]
[call site]
05051
ed_swap_4p
[function]
[call site]
05052
hts_idx_init
[function]
[call site]
05053
idx_read_core
[function]
[call site]
05054
__errno_location
[call site]
05055
bgzf_close
[function]
[call site]
05056
bgzf_close
[function]
[call site]
05057
hts_idx_destroy
[function]
[call site]
05058
__errno_location
[call site]
05059
strerror
[call site]
05060
hts_log
[function]
[call site]
05061
hts_idx_check_local
[function]
[call site]
05062
hisremote
[function]
[call site]
05063
strlen
[call site]
05064
strncmp
[call site]
05065
strncmp
[call site]
05066
hts_log
[function]
[call site]
05067
strlen
[call site]
05068
calloc
[call site]
05069
strcpy
[call site]
05070
stat
[call site]
05071
strcpy
[call site]
05072
stat
[call site]
05073
strcpy
[call site]
05074
stat
[call site]
05075
strcpy
[call site]
05076
stat
[call site]
05077
strcpy
[call site]
05078
stat
[call site]
05079
strcpy
[call site]
05080
stat
[call site]
05081
strcpy
[call site]
05082
stat
[call site]
05083
strcpy
[call site]
05084
stat
[call site]
05085
strcpy
[call site]
05086
strcmp
[call site]
05087
strcmp
[call site]
05088
strcpy
[call site]
05089
stat
[call site]
05090
strcpy
[call site]
05091
stat
[call site]
05092
hisremote
[function]
[call site]
05093
idx_filename
[function]
[call site]
05094
haddextension
[function]
[call site]
05095
find_scheme_handler
[function]
[call site]
05096
strncmp
[call site]
05097
strcspn
[call site]
05098
strchr
[call site]
05099
strip_extension
[function]
[call site]
05100
kputsn
[function]
[call site]
05101
kputs
[function]
[call site]
05102
kputs
[function]
[call site]
05103
idx_test_and_fetch
[function]
[call site]
05104
haddextension
[function]
[call site]
05105
idx_test_and_fetch
[function]
[call site]
05106
idx_filename
[function]
[call site]
05107
idx_filename
[function]
[call site]
05108
idx_filename
[function]
[call site]
05109
idx_filename
[function]
[call site]
05110
idx_filename
[function]
[call site]
05111
hts_log
[function]
[call site]
05112
hts_idx_load3
[function]
[call site]
05113
idx_read
[function]
[call site]
05114
hts_idx_get_meta
[function]
[call site]
05115
le_to_i32
[function]
[call site]
05116
le_to_i32
[function]
[call site]
05117
le_to_i32
[function]
[call site]
05118
le_to_i32
[function]
[call site]
05119
le_to_i32
[function]
[call site]
05120
le_to_i32
[function]
[call site]
05121
le_to_u32
[function]
[call site]
05122
get_tid
[function]
[call site]
05123
kh_init_s2i
[function]
[call site]
05124
kh_put_s2i
[function]
[call site]
05125
strdup
[call site]
05126
kh_del_s2i
[function]
[call site]
05127
kh_get_s2i
[function]
[call site]
05128
__errno_location
[call site]
05129
strerror
[call site]
05130
hts_log
[function]
[call site]
05131
strlen
[call site]
05132
hts_log
[function]
[call site]
05133
tbx_destroy
[function]
[call site]
05134
hts_idx_destroy
[function]
[call site]
05135
kh_destroy_s2i
[function]
[call site]
05136
tbx_seqnames
[function]
[call site]
05137
calloc
[call site]
05138
calloc
[call site]
05139
__assert_fail
[call site]
05140
__assert_fail
[call site]
05141
bcf_hdr_get_hrec
[function]
[call site]
05142
add_missing_contig_hrec
[function]
[call site]
05143
calloc
[call site]
05144
strdup
[call site]
05145
bcf_hrec_add_key
[function]
[call site]
05146
strlen
[call site]
05147
bcf_hrec_set_val
[function]
[call site]
05148
bcf_hdr_add_hrec
[function]
[call site]
05149
__errno_location
[call site]
05150
__errno_location
[call site]
05151
strerror
[call site]
05152
hts_log
[function]
[call site]
05153
bcf_hrec_destroy
[function]
[call site]
05154
__errno_location
[call site]
05155
bcf_hdr_sync
[function]
[call site]
05156
tbx_destroy
[function]
[call site]
05157
tbx_destroy
[function]
[call site]
05158
bcf_hdr_destroy
[function]
[call site]
05159
get_hdr_aux
[function]
[call site]
05160
kh_destroy_hdict
[function]
[call site]
05161
kh_destroy_vdict
[function]
[call site]
05162
bcf_hrec_destroy
[function]
[call site]
05163
hts_log
[function]
[call site]
05164
__assert_fail
[call site]
05165
bcf_hdr_init
[function]
[call site]
05166
bgzf_read
[function]
[call site]
05167
hts_log
[function]
[call site]
05168
bcf_hdr_destroy
[function]
[call site]
05169
strncmp
[call site]
05170
strncmp
[call site]
05171
hts_log
[function]
[call site]
05172
hts_log
[function]
[call site]
05173
bcf_hdr_destroy
[function]
[call site]
05174
bgzf_read
[function]
[call site]
05175
__errno_location
[call site]
05176
__errno_location
[call site]
05177
bgzf_read
[function]
[call site]
05178
bcf_hdr_parse
[function]
[call site]
05179
bcf_hdr_incr_ref
[function]
[call site]
05180
get_hdr_aux
[function]
[call site]
05181
bgzf_set_private_data
[function]
[call site]
05182
__assert_fail
[call site]
05183
hdr_bgzf_private_data_cleanup
[function]
[call site]
05184
bcf_hdr_decr_ref
[function]
[call site]
05185
get_hdr_aux
[function]
[call site]
05186
bcf_hdr_destroy
[function]
[call site]
05187
hts_log
[function]
[call site]
05188
bcf_hdr_destroy
[function]
[call site]
05189
hts_close_or_abort
[function]
[call site]
05190
hts_close
[function]
[call site]
05191
bcf_hdr_write
[function]
[call site]
05192
__errno_location
[call site]
05193
bcf_hdr_sync
[function]
[call site]
05194
vcf_hdr_write
[function]
[call site]
05195
bcf_hdr_format
[function]
[call site]
05196
_bcf_hrec_format
[function]
[call site]
05197
ksprintf
[function]
[call site]
05198
strcmp
[call site]
05199
kputc
[function]
[call site]
05200
ksprintf
[function]
[call site]
05201
ksprintf
[function]
[call site]
05202
ksprintf
[function]
[call site]
05203
ksprintf
[function]
[call site]
05204
ksprintf
[function]
[call site]
05205
ksprintf
[function]
[call site]
05206
ksprintf
[function]
[call site]
05207
bgzf_write
[function]
[call site]
05208
bgzf_flush
[function]
[call site]
05209
hwrite
[function]
[call site]
05210
bcf_hdr_format
[function]
[call site]
05211
kputc
[function]
[call site]
05212
bgzf_write
[function]
[call site]
05213
u32_to_le
[function]
[call site]
05214
bgzf_write
[function]
[call site]
05215
bgzf_write
[function]
[call site]
05216
bgzf_flush
[function]
[call site]
05217
bcf_hdr_incr_ref
[function]
[call site]
05218
bgzf_set_private_data
[function]
[call site]
05219
hdr_bgzf_private_data_cleanup
[function]
[call site]
05220
bcf_init
[function]
[call site]
05221
calloc
[call site]
05222
bcf_read
[function]
[call site]
05223
vcf_read
[function]
[call site]
05224
hts_getline
[function]
[call site]
05225
vcf_parse
[function]
[call site]
05226
ks_resize
[function]
[call site]
05227
bcf_clear
[function]
[call site]
05228
bcf_float_set
[function]
[call site]
05229
kstrtok
[function]
[call site]
05230
kh_get_vdict
[function]
[call site]
05231
hts_log
[function]
[call site]
05232
hts_log
[function]
[call site]
05233
fix_chromosome
[function]
[call site]
05234
ksprintf
[function]
[call site]
05235
bcf_hdr_parse_line
[function]
[call site]
05236
bcf_hdr_add_hrec
[function]
[call site]
05237
bcf_hrec_destroy
[function]
[call site]
05238
bcf_hdr_sync
[function]
[call site]
05239
kh_get_vdict
[function]
[call site]
05240
hts_log
[function]
[call site]
05241
kstrtok
[function]
[call site]
05242
hts_str2uint
[function]
[call site]
05243
hts_log
[function]
[call site]
05244
hts_log
[function]
[call site]
05245
kstrtok
[function]
[call site]
05246
memcmp
[call site]
05247
bcf_enc_vchar
[function]
[call site]
05248
bcf_enc_size
[function]
[call site]
05249
ks_resize
[function]
[call site]
05250
ks_resize
[function]
[call site]
05251
i16_to_le
[function]
[call site]
05252
i32_to_le
[function]
[call site]
05253
kputsn
[function]
[call site]
05254
bcf_enc_size
[function]
[call site]
05255
kstrtok
[function]
[call site]
05256
bcf_enc_vchar
[function]
[call site]
05257
kstrtok
[function]
[call site]
05258
memcmp
[call site]
05259
bcf_seqname_safe
[function]
[call site]
05260
bcf_seqname
[function]
[call site]
05261
bcf_hdr_id2name
[function]
[call site]
05262
hts_log
[function]
[call site]
05263
bcf_enc_vchar
[function]
[call site]
05264
kstrtok
[function]
[call site]
05265
memcmp
[call site]
05266
atof
[call site]
05267
bcf_float_set
[function]
[call site]
05268
kstrtok
[function]
[call site]
05269
memcmp
[call site]
05270
vcf_parse_filter
[function]
[call site]
05271
hts_malloc_p
[function]
[call site]
05272
bcf_seqname_safe
[function]
[call site]
05273
hts_log
[function]
[call site]
05274
kstrtok
[function]
[call site]
05275
kh_get_vdict
[function]
[call site]
05276
bcf_seqname_safe
[function]
[call site]
05277
hts_log
[function]
[call site]
05278
hts_log
[function]
[call site]
05279
ksprintf
[function]
[call site]
05280
bcf_hdr_parse_line
[function]
[call site]
05281
bcf_hdr_add_hrec
[function]
[call site]
05282
bcf_hrec_destroy
[function]
[call site]
05283
bcf_hdr_sync
[function]
[call site]
05284
kh_get_vdict
[function]
[call site]
05285
bcf_seqname_safe
[function]
[call site]
05286
hts_log
[function]
[call site]
05287
bcf_enc_vint
[function]
[call site]
05288
bcf_enc_size
[function]
[call site]
05289
bcf_enc_int1
[function]
[call site]
05290
ks_resize
[function]
[call site]
05291
i16_to_le
[function]
[call site]
05292
i32_to_le
[function]
[call site]
05293
bcf_enc_size
[function]
[call site]
05294
ks_resize
[function]
[call site]
05295
bcf_enc_size
[function]
[call site]
05296
ks_resize
[function]
[call site]
05297
i16_to_le
[function]
[call site]
05298
bcf_enc_size
[function]
[call site]
05299
ks_resize
[function]
[call site]
05300
i32_to_le
[function]
[call site]
05301
bcf_enc_vint
[function]
[call site]
05302
kstrtok
[function]
[call site]
05303
memcmp
[call site]
05304
vcf_parse_info
[function]
[call site]
05305
bcf_seqname_safe
[function]
[call site]
05306
hts_log
[function]
[call site]
05307
kh_get_vdict
[function]
[call site]
05308
bcf_seqname_safe
[function]
[call site]
05309
hts_log
[function]
[call site]
05310
ksprintf
[function]
[call site]
05311
bcf_hdr_parse_line
[function]
[call site]
05312
bcf_hdr_add_hrec
[function]
[call site]
05313
bcf_hrec_destroy
[function]
[call site]
05314
bcf_hdr_sync
[function]
[call site]
05315
kh_get_vdict
[function]
[call site]
05316
bcf_seqname_safe
[function]
[call site]
05317
hts_log
[function]
[call site]
05318
bcf_enc_int1
[function]
[call site]
05319
bcf_enc_size
[function]
[call site]
05320
bcf_enc_vchar
[function]
[call site]
05321
hts_realloc_p
[function]
[call site]
05322
bcf_seqname_safe
[function]
[call site]
05323
hts_log
[function]
[call site]
05324
hts_str2int
[function]
[call site]
05325
bcf_seqname_safe
[function]
[call site]
05326
hts_log
[function]
[call site]
05327
bcf_enc_int1
[function]
[call site]
05328
bcf_enc_vint
[function]
[call site]
05329
memcmp
[call site]
05330
bcf_seqname_safe
[function]
[call site]
05331
hts_log
[function]
[call site]
05332
hts_str2dbl
[function]
[call site]
05333
bcf_float_set
[function]
[call site]
05334
bcf_enc_vfloat
[function]
[call site]
05335
__assert_fail
[call site]
05336
bcf_enc_size
[function]
[call site]
05337
serialize_float_array
[function]
[call site]
05338
ks_resize
[function]
[call site]
05339
float_to_le
[function]
[call site]
05340
kstrtok
[function]
[call site]
05341
vcf_parse_format
[function]
[call site]
05342
vcf_parse_format_empty1
[function]
[call site]
05343
bcf_seqname_safe
[function]
[call site]
05344
hts_log
[function]
[call site]
05345
memchr
[call site]
05346
bcf_seqname_safe
[function]
[call site]
05347
hts_log
[function]
[call site]
05348
vcf_parse_format_dict2
[function]
[call site]
05349
kstrtok
[function]
[call site]
05350
bcf_seqname_safe
[function]
[call site]
05351
hts_log
[function]
[call site]
05352
kh_get_vdict
[function]
[call site]
05353
bcf_seqname_safe
[function]
[call site]
05354
hts_log
[function]
[call site]
05355
bcf_seqname_safe
[function]
[call site]
05356
hts_log
[function]
[call site]
05357
hts_log
[function]
[call site]
05358
ksprintf
[function]
[call site]
05359
bcf_hdr_parse_line
[function]
[call site]
05360
bcf_hdr_add_hrec
[function]
[call site]
05361
bcf_hrec_destroy
[function]
[call site]
05362
bcf_hdr_sync
[function]
[call site]
05363
kh_get_vdict
[function]
[call site]
05364
bcf_seqname_safe
[function]
[call site]
05365
hts_log
[function]
[call site]
05366
vcf_parse_format_max3
[function]
[call site]
05367
hts_log
[function]
[call site]
05368
hts_log
[function]
[call site]
05369
vcf_parse_format_alloc4
[function]
[call site]
05370
bcf_seqname_safe
[function]
[call site]
05371
hts_log
[function]
[call site]
05372
align_mem
[function]
[call site]
05373
kputsn
[function]
[call site]
05374
bcf_seqname_safe
[function]
[call site]
05375
hts_log
[function]
[call site]
05376
bcf_seqname_safe
[function]
[call site]
05377
hts_log
[function]
[call site]
05378
ks_resize
[function]
[call site]
05379
bcf_seqname_safe
[function]
[call site]
05380
hts_log
[function]
[call site]
05381
bcf_seqname_safe
[function]
[call site]
05382
hts_log
[function]
[call site]
05383
vcf_parse_format_fill5
[function]
[call site]
05384
bcf_get_version
[function]
[call site]
05385
bcf_seqname_safe
[function]
[call site]
05386
hts_log
[function]
[call site]
05387
hts_str2uint
[function]
[call site]
05388
bcf_seqname_safe
[function]
[call site]
05389
hts_log
[function]
[call site]
05390
bcf_seqname_safe
[function]
[call site]
05391
hts_log
[function]
[call site]
05392
hts_str2int
[function]
[call site]
05393
bcf_seqname_safe
[function]
[call site]
05394
hts_log
[function]
[call site]
05395
isdigit_c
[function]
[call site]
05396
bcf_float_set
[function]
[call site]
05397
hts_str2dbl
[function]
[call site]
05398
bcf_seqname
[function]
[call site]
05399
hts_log
[function]
[call site]
05400
bcf_float_set
[function]
[call site]
05401
bcf_float_set
[function]
[call site]
05402
bcf_seqname_safe
[function]
[call site]
05403
hts_log
[function]
[call site]
05404
hts_strprint
[function]
[call site]
05405
bcf_seqname_safe
[function]
[call site]
05406
hts_log
[function]
[call site]
05407
bcf_float_set
[function]
[call site]
05408
bcf_float_set
[function]
[call site]
05409
vcf_parse_format_gt6
[function]
[call site]
05410
bcf_enc_int1
[function]
[call site]
05411
bcf_enc_size
[function]
[call site]
05412
kputsn
[function]
[call site]
05413
bcf_enc_vint
[function]
[call site]
05414
bcf_enc_size
[function]
[call site]
05415
serialize_float_array
[function]
[call site]
05416
bcf_seqname_safe
[function]
[call site]
05417
hts_log
[function]
[call site]
05418
vcf_parse_format_check7
[function]
[call site]
05419
bcf_seqname_safe
[function]
[call site]
05420
hts_log
[function]
[call site]
05421
bcf_seqname_safe
[function]
[call site]
05422
hts_log
[function]
[call site]
05423
get_rlen
[function]
[call site]
05424
bcf_hdr_id2int
[function]
[call site]
05425
svlen_on_ref_for_vcf_alt
[function]
[call site]
05426
strlen
[call site]
05427
memcmp
[call site]
05428
memcmp
[call site]
05429
memcmp
[call site]
05430
memcmp
[call site]
05431
strcmp
[call site]
05432
strcmp
[call site]
05433
strlen
[call site]
05434
bcf_dec_size
[function]
[call site]
05435
bcf_dec_typed_int1
[function]
[call site]
05436
bcf_dec_int1
[function]
[call site]
05437
le_to_i8
[function]
[call site]
05438
le_to_i16
[function]
[call site]
05439
le_to_i32
[function]
[call site]
05440
le_to_i64
[function]
[call site]
05441
le_to_u64
[function]
[call site]
05442
bcf_dec_size
[function]
[call site]
05443
svlen_on_ref_for_vcf_alt
[function]
[call site]
05444
strncmp
[call site]
05445
strncmp
[call site]
05446
bcf_dec_size
[function]
[call site]
05447
bcf_hdr_id2int
[function]
[call site]
05448
bcf_get_info
[function]
[call site]
05449
bcf_hdr_id2int
[function]
[call site]
05450
bcf_get_info_id
[function]
[call site]
05451
bcf_unpack
[function]
[call site]
05452
bcf_fmt_sized_array
[function]
[call site]
05453
bcf_dec_size
[function]
[call site]
05454
bcf_fmt_array
[function]
[call site]
05455
kputc_
[function]
[call site]
05456
memchr
[call site]
05457
kputsn
[function]
[call site]
05458
kputc
[function]
[call site]
05459
le_to_i8
[function]
[call site]
05460
kputc_
[function]
[call site]
05461
kputc
[function]
[call site]
05462
kputw
[function]
[call site]
05463
le_to_i16
[function]
[call site]
05464
kputc_
[function]
[call site]
05465
kputc
[function]
[call site]
05466
kputw
[function]
[call site]
05467
le_to_i32
[function]
[call site]
05468
kputc_
[function]
[call site]
05469
kputc
[function]
[call site]
05470
kputw
[function]
[call site]
05471
le_to_u32
[function]
[call site]
05472
kputc_
[function]
[call site]
05473
kputc
[function]
[call site]
05474
le_to_float
[function]
[call site]
05475
kputd
[function]
[call site]
05476
hts_log
[function]
[call site]
05477
exit
[call site]
05478
kputc_
[function]
[call site]
05479
hts_realloc_or_die
[function]
[call site]
05480
bcf_fmt_sized_array
[function]
[call site]
05481
kputc_
[function]
[call site]
05482
bcf_dec_size
[function]
[call site]
05483
hts_realloc_or_die
[function]
[call site]
05484
bcf_dec_int1
[function]
[call site]
05485
hts_realloc_or_die
[function]
[call site]
05486
bcf_unpack_info_core1
[function]
[call site]
05487
bcf_dec_typed_int1
[function]
[call site]
05488
bcf_dec_size
[function]
[call site]
05489
le_to_i16
[function]
[call site]
05490
le_to_i32
[function]
[call site]
05491
le_to_float
[function]
[call site]
05492
le_to_i64
[function]
[call site]
05493
hts_realloc_or_die
[function]
[call site]
05494
bcf_unpack_fmt_core1
[function]
[call site]
05495
bcf_dec_typed_int1
[function]
[call site]
05496
bcf_dec_size
[function]
[call site]
05497
bcf_get_info
[function]
[call site]
05498
bcf_dec_typed_int1
[function]
[call site]
05499
bcf_unpack_info_core1
[function]
[call site]
05500
bcf_unpack_info_core1
[function]
[call site]
05501
bcf_dec_size
[function]
[call site]
05502
bcf_hdr_id2int
[function]
[call site]
05503
bcf_get_fmt
[function]
[call site]
05504
bcf_hdr_id2int
[function]
[call site]
05505
bcf_get_fmt_id
[function]
[call site]
05506
bcf_unpack
[function]
[call site]
05507
bcf_dec_typed_int1
[function]
[call site]
05508
bcf_unpack_fmt_core1
[function]
[call site]
05509
bcf_dec_size
[function]
[call site]
05510
le_to_i8
[function]
[call site]
05511
le_to_i16
[function]
[call site]
05512
le_to_i32
[function]
[call site]
05513
le_to_i64
[function]
[call site]
05514
le_to_i8
[function]
[call site]
05515
le_to_i16
[function]
[call site]
05516
le_to_i32
[function]
[call site]
05517
le_to_i64
[function]
[call site]
05518
bgzf_get_private_data
[function]
[call site]
05519
__assert_fail
[call site]
05520
bcf_read1_core
[function]
[call site]
05521
bgzf_read
[function]
[call site]
05522
bcf_clear
[function]
[call site]
05523
le_to_u32
[function]
[call site]
05524
le_to_u32
[function]
[call site]
05525
ks_resize
[function]
[call site]
05526
ks_resize
[function]
[call site]
05527
le_to_i32
[function]
[call site]
05528
le_to_u32
[function]
[call site]
05529
le_to_i32
[function]
[call site]
05530
le_to_float
[function]
[call site]
05531
le_to_u16
[function]
[call site]
05532
le_to_u16
[function]
[call site]
05533
le_to_u32
[function]
[call site]
05534
bgzf_read
[function]
[call site]
05535
bgzf_read
[function]
[call site]
05536
bcf_record_check
[function]
[call site]
05537
bcf_get_version
[function]
[call site]
05538
bcf_hdr_id2int
[function]
[call site]
05539
bcf_dec_size_safe
[function]
[call site]
05540
bcf_dec_typed_int1_safe
[function]
[call site]
05541
le_to_i16
[function]
[call site]
05542
le_to_i32
[function]
[call site]
05543
bcf_seqname_safe
[function]
[call site]
05544
get_type_name
[function]
[call site]
05545
hts_log
[function]
[call site]
05546
bcf_seqname_safe
[function]
[call site]
05547
hts_log
[function]
[call site]
05548
bcf_dec_size_safe
[function]
[call site]
05549
bcf_seqname_safe
[function]
[call site]
05550
get_type_name
[function]
[call site]
05551
hts_log
[function]
[call site]
05552
bcf_dec_size_safe
[function]
[call site]
05553
bcf_seqname_safe
[function]
[call site]
05554
get_type_name
[function]
[call site]
05555
hts_log
[function]
[call site]
05556
bcf_dec_int1
[function]
[call site]
05557
bcf_seqname_safe
[function]
[call site]
05558
hts_log
[function]
[call site]
05559
bcf_dec_typed_int1_safe
[function]
[call site]
05560
bcf_seqname_safe
[function]
[call site]
05561
hts_log
[function]
[call site]
05562
bcf_dec_size_safe
[function]
[call site]
05563
bcf_seqname_safe
[function]
[call site]
05564
get_type_name
[function]
[call site]
05565
hts_log
[function]
[call site]
05566
bcf_dec_typed_int1_safe
[function]
[call site]
05567
bcf_record_check_err
[function]
[call site]
05568
bcf_seqname_safe
[function]
[call site]
05569
hts_log
[function]
[call site]
05570
bcf_dec_size_safe
[function]
[call site]
05571
bcf_record_check_err
[function]
[call site]
05572
updatephasing
[function]
[call site]
05573
bcf_seqname_safe
[function]
[call site]
05574
hts_log
[function]
[call site]
05575
get_rlen
[function]
[call site]
05576
bcf_seqname_safe
[function]
[call site]
05577
hts_log
[function]
[call site]
05578
bcf_seqname_safe
[function]
[call site]
05579
hts_log
[function]
[call site]
05580
bcf_seqname_safe
[function]
[call site]
05581
hts_log
[function]
[call site]
05582
bcf_subset_format
[function]
[call site]
05583
hts_realloc_or_die
[function]
[call site]
05584
bcf_unpack_fmt_core1
[function]
[call site]
05585
bcf_write
[function]
[call site]
05586
bcf_hdr_sync
[function]
[call site]
05587
bcf_seqname_safe
[function]
[call site]
05588
hts_log
[function]
[call site]
05589
vcf_write
[function]
[call site]
05590
vcf_format
[function]
[call site]
05591
bcf_seqname
[function]
[call site]
05592
hts_log
[function]
[call site]
05593
__errno_location
[call site]
05594
bcf_unpack
[function]
[call site]
05595
get_hdr_aux
[function]
[call site]
05596
calloc
[call site]
05597
kputs
[function]
[call site]
05598
kputc_
[function]
[call site]
05599
kputll
[function]
[call site]
05600
kputc_
[function]
[call site]
05601
kputs
[function]
[call site]
05602
kputc_
[function]
[call site]
05603
kputs
[function]
[call site]
05604
kputc_
[function]
[call site]
05605
kputc_
[function]
[call site]
05606
kputc_
[function]
[call site]
05607
kputs
[function]
[call site]
05608
kputc_
[function]
[call site]
05609
kputc_
[function]
[call site]
05610
bcf_float_is_missing
[function]
[call site]
05611
kputc_
[function]
[call site]
05612
kputd
[function]
[call site]
05613
kputc_
[function]
[call site]
05614
bcf_seqname_safe
[function]
[call site]
05615
hts_log
[function]
[call site]
05616
__errno_location
[call site]
05617
kputc_
[function]
[call site]
05618
strlen
[call site]
05619
kputsn
[function]
[call site]
05620
kputc_
[function]
[call site]
05621
kputc_
[function]
[call site]
05622
bcf_dec_typed_int1
[function]
[call site]
05623
bcf_dec_size
[function]
[call site]
05624
bcf_seqname_safe
[function]
[call site]
05625
hts_log
[function]
[call site]
05626
__errno_location
[call site]
05627
strlen
[call site]
05628
ks_resize
[function]
[call site]
05629
bcf_fmt_array
[function]
[call site]
05630
bcf_float_is_missing
[function]
[call site]
05631
kputd
[function]
[call site]
05632
kputc_
[function]
[call site]
05633
kputc_
[function]
[call site]
05634
kputw
[function]
[call site]
05635
kputc_
[function]
[call site]
05636
kputll
[function]
[call site]
05637
bcf_seqname_safe
[function]
[call site]
05638
hts_log
[function]
[call site]
05639
__errno_location
[call site]
05640
kputc_
[function]
[call site]
05641
kputc_
[function]
[call site]
05642
hts_malloc_p
[function]
[call site]
05643
bcf_dec_typed_int1
[function]
[call site]
05644
bcf_dec_size
[function]
[call site]
05645
kputc_
[function]
[call site]
05646
bcf_seqname_safe
[function]
[call site]
05647
hts_log
[function]
[call site]
05648
__errno_location
[call site]
05649
strlen
[call site]
05650
kputsn
[function]
[call site]
05651
kputsn
[function]
[call site]
05652
kputc_
[function]
[call site]
05653
kputc_
[function]
[call site]
05654
bcf_format_gt_v2
[function]
[call site]
05655
le_to_i8
[function]
[call site]
05656
kputc
[function]
[call site]
05657
kputw
[function]
[call site]
05658
le_to_i16
[function]
[call site]
05659
kputc
[function]
[call site]
05660
kputw
[function]
[call site]
05661
le_to_i32
[function]
[call site]
05662
kputc
[function]
[call site]
05663
kputw
[function]
[call site]
05664
kputc
[function]
[call site]
05665
hts_log
[function]
[call site]
05666
get_hdr_aux
[function]
[call site]
05667
kinsert_char
[function]
[call site]
05668
ks_resize
[function]
[call site]
05669
kinsert_char
[function]
[call site]
05670
kinsert_char
[function]
[call site]
05671
hts_log
[function]
[call site]
05672
__errno_location
[call site]
05673
bcf_fmt_array1
[function]
[call site]
05674
kputc_
[function]
[call site]
05675
kputc_
[function]
[call site]
05676
kputw
[function]
[call site]
05677
le_to_i16
[function]
[call site]
05678
kputc_
[function]
[call site]
05679
kputw
[function]
[call site]
05680
le_to_i32
[function]
[call site]
05681
kputc_
[function]
[call site]
05682
kputw
[function]
[call site]
05683
le_to_u32
[function]
[call site]
05684
kputc_
[function]
[call site]
05685
le_to_float
[function]
[call site]
05686
kputd
[function]
[call site]
05687
hts_log
[function]
[call site]
05688
bcf_fmt_array
[function]
[call site]
05689
kputc_
[function]
[call site]
05690
bcf_fmt_array1
[function]
[call site]
05691
bcf_fmt_array
[function]
[call site]
05692
kputc_
[function]
[call site]
05693
kputsn
[function]
[call site]
05694
kputc
[function]
[call site]
05695
bgzf_flush_try
[function]
[call site]
05696
hts_idx_amend_last
[function]
[call site]
05697
bgzf_write
[function]
[call site]
05698
hwrite
[function]
[call site]
05699
bcf_seqname_safe
[function]
[call site]
05700
hts_idx_tbi_name
[function]
[call site]
05701
strlen
[call site]
05702
hts_realloc_ps
[function]
[call site]
05703
strcpy
[call site]
05704
le_to_u32
[function]
[call site]
05705
u32_to_le
[function]
[call site]
05706
bgzf_idx_push
[function]
[call site]
05707
bcf_strerror
[function]
[call site]
05708
add_desc_to_buffer
[function]
[call site]
05709
add_desc_to_buffer
[function]
[call site]
05713
bcf_seqname_safe
[function]
[call site]
05714
hts_log
[function]
[call site]
05715
bcf1_sync
[function]
[call site]
05716
bcf1_sync_id
[function]
[call site]
05717
strcmp
[call site]
05718
strlen
[call site]
05719
bcf_enc_vchar
[function]
[call site]
05720
bcf_enc_size
[function]
[call site]
05721
bcf1_sync_alleles
[function]
[call site]
05722
bcf1_sync_filter
[function]
[call site]
05726
bcf_enc_vint
[function]
[call site]
05727
bcf_enc_vint
[function]
[call site]
05728
bcf1_sync_info
[function]
[call site]
05729
kputsn_
[function]
[call site]
05730
bcf_unpack
[function]
[call site]
05731
bcf1_sync_id
[function]
[call site]
05732
kputsn_
[function]
[call site]
05733
bcf1_sync_alleles
[function]
[call site]
05734
kputsn_
[function]
[call site]
05735
strlen
[call site]
05736
bcf1_sync_filter
[function]
[call site]
05737
kputsn_
[function]
[call site]
05738
bcf_enc_vint
[function]
[call site]
05739
bcf1_sync_info
[function]
[call site]
05740
kputsn_
[function]
[call site]
05741
kputsn_
[function]
[call site]
05742
bcf_seqname_safe
[function]
[call site]
05743
hts_log
[function]
[call site]
05744
u32_to_le
[function]
[call site]
05745
u32_to_le
[function]
[call site]
05746
i32_to_le
[function]
[call site]
05747
u32_to_le
[function]
[call site]
05748
u32_to_le
[function]
[call site]
05749
float_to_le
[function]
[call site]
05750
u16_to_le
[function]
[call site]
05751
u16_to_le
[function]
[call site]
05752
bgzf_write
[function]
[call site]
05753
bgzf_write
[function]
[call site]
05754
bgzf_write
[function]
[call site]
05755
bgzf_idx_push
[function]
[call site]
05756
bcf_destroy
[function]
[call site]
05757
bcf_empty
[function]
[call site]
05758
bcf_clear
[function]
[call site]
05759
bcf_hdr_destroy
[function]
[call site]
05760
hts_close_or_abort
[function]
[call site]
05761
hts_close
[function]
[call site]
05762
view_vcf
[function]
[call site]
05763