Fuzz introspector
For issues and ideas: https://github.com/ossf/fuzz-introspector/issues

Fuzzer details

Fuzzer: fuzz_obconversion_sdf

Call tree

The calltree shows the control flow of the fuzzer. This is overlaid with coverage information to display how much of the potential code a fuzzer can reach is in fact covered at runtime. In the following there is a link to a detailed calltree visualisation as well as a bitmap showing a high-level view of the calltree. For further information about these topics please see the glossary for full calltree and calltree overview

Call tree overview bitmap:

The distribution of callsites in terms of coloring is
Color Runtime hitcount Callsite count Percentage
red 0 15 21.4%
gold [1:9] 6 8.57%
yellow [10:29] 0 0.0%
greenyellow [30:49] 0 0.0%
lawngreen 50+ 49 70.0%
All colors 70 100

Fuzz blockers

The followings are the branches where fuzzer fails to bypass.

Unique non-covered Complexity Unique Reachable Complexities Unique Reachable Functions All non-covered Complexity All Reachable Complexity Function Name Function Callsite Blocked Branch
25721 27287 44 :

['OpenBabel::OBMol::GetBond(OpenBabel::OBAtom*, OpenBabel::OBAtom*) const', 'OpenBabel::OBMol::~OBMol()', 'OpenBabel::OBMol::operator+=(OpenBabel::OBMol const&)', 'std::__1::__wrap_iter ::operator*() const', 'std::__1::basic_string , std::__1::allocator >::operator=(std::__1::basic_string , std::__1::allocator > const&)', 'OpenBabel::OBAtom::GetVector()', 'OpenBabel::OBMol::DeleteAtom(OpenBabel::OBAtom*, bool)', 'std::__1::vector , std::__1::allocator > >::empty() const', 'std::__1::basic_string , std::__1::allocator >::~basic_string()', 'OpenBabel::OBAtom::GetId() const', 'std::__1::pair ::type, std::__1::__unwrap_ref_decay ::type> std::__1::make_pair (OpenBabel::OBAtom*&, unsigned int&&)', 'OpenBabel::OBBuilder::Build(OpenBabel::OBMol&, bool)', 'OpenBabel::OBMol::NumAtoms() const', 'OpenBabel::groupRedraw(OpenBabel::OBMol*, int, int, bool)', 'OpenBabel::OBMol::SetIsPatternStructure(bool)', 'OpenBabel::OBAtom::SetVector(OpenBabel::vector3 const&)', 'OpenBabel::OBMol::OBMol()', 'OpenBabel::OBConversion::~OBConversion()', 'OpenBabel::OBMol::NumBonds() const', 'OpenBabel::OBBase::CloneData(OpenBabel::OBGenericData*)', 'OpenBabel::OBMol::SetDimension(unsigned short)', 'OpenBabel::OBBond::GetFlags() const', 'OpenBabel::OBBuilder::Connect(OpenBabel::OBMol&, int, int, OpenBabel::vector3&, int)', 'OpenBabel::OBAtom::BeginNbrAtom(std::__1::__wrap_iter &)', 'OpenBabel::OBMol::GetAtom(int) const', 'OpenBabel::OBBond::GetBondOrder() const', 'std::__1::vector , std::__1::allocator > >::pop_back()', 'std::__1::vector , std::__1::allocator > >::~vector()', 'std::__1::__map_iterator , std::__1::allocator >, OpenBabel::AliasData::AliasItem>, std::__1::__tree_node , std::__1::allocator >, OpenBabel::AliasData::AliasItem>, void*>*, long> >::operator->() const', 'std::__1::vector , std::__1::allocator > >::back()', 'OpenBabel::OBConversion::SetInFormat(char const*, bool)', 'OpenBabel::OBBuilder::OBBuilder()', 'std::__1::basic_string , std::__1::allocator > std::__1::operator+ , std::__1::allocator >(char, std::__1::basic_string , std::__1::allocator > const&)', 'std::__1::vector , std::__1::allocator > >::push_back(std::__1::pair &&)', 'std::__1::vector >::push_back(unsigned long&&)', 'OpenBabel::OBConversion::ReadString(OpenBabel::OBBase*, std::__1::basic_string , std::__1::allocator >)', 'OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)', 'OpenBabel::OBAtom::GetIdx() const', 'OpenBabel::OBMol::Has3D()', 'std::__1::vector , std::__1::allocator > >::vector()', 'OpenBabel::OBMol::Has2D(bool)', 'std::__1::__wrap_iter ::__wrap_iter()', 'OpenBabel::OBMol::AddBond(int, int, int, int, int)', 'OpenBabel::OBAtom::NextNbrAtom(std::__1::__wrap_iter &)']

25721 27287 OpenBabel::AliasData::FromNameLookup(OpenBabel::OBMol&,unsignedint) call site: 00000 /src/openbabel/src/alias.cpp:127
19386 19523 24 :

['OpenBabel::OBCisTransStereo::Config::~Config()', 'OpenBabel::OBBond::GetId() const', 'OpenBabel::OBTetrahedralStereo::GetConfig(OpenBabel::OBStereo::Winding, OpenBabel::OBStereo::View) const', 'OpenBabel::OBStereoFacade::GetTetrahedralStereo(unsigned long)', 'OpenBabel::OBAtom::GetId() const', 'std::__1::__map_const_iterator , std::__1::__tree_node , void*>*, long> >::__map_const_iterator(std::__1::__map_iterator , std::__1::__tree_node , void*>*, long> >)', 'OpenBabel::OBCisTransStereo::GetConfig(OpenBabel::OBStereo::Shape) const', 'OpenBabel::StereoFrom3D(OpenBabel::OBMol*, bool)', 'std::__1::__map_const_iterator , std::__1::__tree_node , void*>*, long> >::__map_const_iterator()', 'OpenBabel::OBTetrahedralStereo::Config::~Config()', 'std::__1::__map_const_iterator , std::__1::__tree_node , void*>*, long> >::operator++()', 'std::__1::vector >::size() const', 'OpenBabel::OBMol::GetAtom(int) const', 'OpenBabel::OBTetrahedralStereo::SetConfig(OpenBabel::OBTetrahedralStereo::Config const&)', 'std::__1::vector >::operator[](unsigned long)', 'OpenBabel::OBBond::GetBondOrder() const', 'OpenBabel::OBStereoFacade::GetCisTransStereo(unsigned long)', 'OpenBabel::OBStereoFacade::~OBStereoFacade()', 'std::__1::operator!=(std::__1::__map_const_iterator , std::__1::__tree_node , void*>*, long> > const&, std::__1::__map_const_iterator , std::__1::__tree_node , void*>*, long> > const&)', 'OpenBabel::OBStereoFacade::OBStereoFacade(OpenBabel::OBMol*, bool)', 'std::__1::__map_const_iterator , std::__1::__tree_node , void*>*, long> >::operator->() const', 'OpenBabel::OBCisTransStereo::SetConfig(OpenBabel::OBCisTransStereo::Config const&)', 'std::__1::map , std::__1::allocator > >::begin()', 'std::__1::map , std::__1::allocator > >::end()']

19386 19803 OpenBabel::MDLFormat::ReadMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*) call site: 00000 /src/openbabel/src/formats/mdlformat.cpp:855
6334 6334 1 :

['OpenBabel::OBSmartsMatcher::FastSingleMatch(OpenBabel::OBMol&, OpenBabel::Pattern const*, std::__1::vector >, std::__1::allocator > > >&)']

13236 13913 OpenBabel::OBSmartsMatcher::match(OpenBabel::OBMol&,OpenBabel::Patternconst*,std::__1::vector >,std::__1::allocator >>>&,bool) call site: 00000 /src/openbabel/src/parsmart.cpp:2006
6278 6278 1 :

['OpenBabel::StereoFrom2D(OpenBabel::OBMol*, std::__1::map , std::__1::allocator > >*, bool)']

6278 6558 OpenBabel::MDLFormat::ReadMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*) call site: 00000 /src/openbabel/src/formats/mdlformat.cpp:894
1816 2096 9 :

['std::__1::__wrap_iter ::operator*() const', 'OpenBabel::OBMol::NumAtoms() const', 'OpenBabel::OBMol::GetBond(int, int) const', 'OpenBabel::OBAtom::BeginNbrAtom(std::__1::__wrap_iter &)', 'OpenBabel::OBMol::GetAtom(int) const', 'OpenBabel::OBSmartsMatcher::EvalBondExpr(OpenBabel::_BondExpr*, OpenBabel::OBBond*)', 'OpenBabel::OBAtom::NextNbrAtom(std::__1::__wrap_iter &)', 'std::__1::vector >, std::__1::allocator > > >::push_back(std::__1::vector > const&)', 'std::__1::__wrap_iter ::__wrap_iter()']

1816 21006 OpenBabel::OBSSMatch::Match(std::__1::vector >,std::__1::allocator >>>&,int) call site: 00000 /src/openbabel/src/parsmart.cpp:2330
147 147 1 :

['OpenBabel::OBSmartsPattern::SMARTSError(OpenBabel::Pattern*)']

147 147 OpenBabel::OBSmartsPattern::ParseSMARTSString(char*) call site: 00000 /src/openbabel/src/parsmart.cpp:1690
11 11 17 :

['OpenBabel::AliasData::AliasItem::~AliasItem()', 'std::__1::basic_string , std::__1::allocator >::operator[](unsigned long)', 'OpenBabel::tokenize(std::__1::vector , std::__1::allocator >, std::__1::allocator , std::__1::allocator > > >&, std::__1::basic_string , std::__1::allocator >&, char const*, int)', 'std::__1::basic_string , std::__1::allocator >::operator=(std::__1::basic_string , std::__1::allocator > const&)', 'std::__1::basic_string , std::__1::allocator >::empty() const', 'std::__1::vector , std::__1::allocator >, std::__1::allocator , std::__1::allocator > > >::size() const', 'std::__1::basic_string , std::__1::allocator >::operator=(std::__1::basic_string , std::__1::allocator >&&)', 'std::__1::basic_string , std::__1::allocator >::basic_string(std::__1::basic_string , std::__1::allocator > const&)', 'std::__1::vector , std::__1::allocator >, std::__1::allocator , std::__1::allocator > > >::operator[](unsigned long)', 'std::__1::basic_istream >& std::__1::getline , std::__1::allocator >(std::__1::basic_istream >&, std::__1::basic_string , std::__1::allocator >&)', 'std::__1::map , std::__1::allocator >, OpenBabel::AliasData::AliasItem, std::__1::less , std::__1::allocator > >, std::__1::allocator , std::__1::allocator > const, OpenBabel::AliasData::AliasItem> > >::operator[](std::__1::basic_string , std::__1::allocator > const&)', 'std::__1::basic_string , std::__1::allocator >::basic_string()', 'OpenBabel::AliasData::AliasItem::operator=(OpenBabel::AliasData::AliasItem const&)', 'std::__1::vector , std::__1::allocator >, std::__1::allocator , std::__1::allocator > > >::vector()', 'std::__1::vector , std::__1::allocator >, std::__1::allocator , std::__1::allocator > > >::~vector()', 'OpenBabel::AliasData::AliasItem::AliasItem()', 'std::__1::basic_ios >::operator bool() const']

11 11 OpenBabel::AliasData::LoadFile(std::__1::map ,std::__1::allocator >,OpenBabel::AliasData::AliasItem,std::__1::less ,std::__1::allocator >>,std::__1::allocator ,std::__1::allocator >const,OpenBabel::AliasData::AliasItem>>>&) call site: 00000 /src/openbabel/src/alias.cpp:226
7 32 15 :

['bool std::__1::operator!= (std::__1::__wrap_iter const&, std::__1::__wrap_iter const&)', 'OpenBabel::OBMol::NextAtom(std::__1::__wrap_iter &)', 'OpenBabel::OBAtom::SetVector()', 'OpenBabel::OBBase::GetData(unsigned int)', 'std::__1::__wrap_iter ::operator*() const', 'std::__1::vector >::clear()', 'std::__1::vector >::end()', 'OpenBabel::OBAtom::ClearCoordPtr()', 'operator delete[](void*)', 'std::__1::__wrap_iter ::__wrap_iter()', 'OpenBabel::OBBase::DeleteData(unsigned int)', 'std::__1::__wrap_iter ::__wrap_iter()', 'std::__1::__wrap_iter ::operator++()', 'std::__1::vector >::begin()', 'OpenBabel::OBMol::BeginAtom(std::__1::__wrap_iter &)']

7 32 OpenBabel::OBMol::BeginModify() call site: 00000 /src/openbabel/src/mol.cpp:1488
2 65 2 :

['OpenBabel::BuildBondNot(OpenBabel::_BondExpr*)', 'OpenBabel::OBSmartsPattern::ParseBondExpr(int)']

2 65 OpenBabel::OBSmartsPattern::ParseBondExpr(int) call site: 00000 /src/openbabel/src/parsmart.cpp:1323
2 9 5 :

['OpenBabel::OBAtom::InsertBond(std::__1::__wrap_iter &, OpenBabel::OBBond*)', 'std::__1::__wrap_iter ::operator+=(long)', 'OpenBabel::OBAtom::GetExplicitDegree() const', 'OpenBabel::OBAtom::BeginNbrAtom(std::__1::__wrap_iter &)', 'std::__1::__wrap_iter ::__wrap_iter()']

2 13 OpenBabel::OBMol::AddBond(int,int,int,int,int) call site: 00000 /src/openbabel/src/mol.cpp:2558
0 116 3 :

['OpenBabel::OBMessageHandler::ThrowError(std::__1::basic_string , std::__1::allocator > const&, std::__1::basic_string , std::__1::allocator > const&, OpenBabel::obMessageLevel, OpenBabel::errorQualifier)', 'std::__1::basic_string , std::__1::allocator >::basic_string (char const*)', 'std::__1::basic_string , std::__1::allocator >::~basic_string()']

0 122 OpenBabel::OBMol::Clear() call site: 00000 /src/openbabel/src/mol.cpp:1440
0 116 4 :

['OpenBabel::OBMessageHandler::ThrowError(std::__1::basic_string , std::__1::allocator > const&, std::__1::basic_string , std::__1::allocator > const&, OpenBabel::obMessageLevel, OpenBabel::errorQualifier)', 'std::__1::basic_string , std::__1::allocator >::basic_string (char const*)', 'std::__1::basic_string , std::__1::allocator >::operator+=(char const*)', 'std::__1::basic_string , std::__1::allocator >::operator+=(std::__1::basic_string , std::__1::allocator > const&)']

0 116 OpenBabel::OBGlobalDataBase::Init() call site: 00000 /src/openbabel/src/data.cpp:724

Runtime coverage analysis

Covered functions
638
Functions that are reachable but not covered
19
Reachable functions
85
Percentage of reachable functions covered
77.65%
NB: The sum of covered functions and functions that are reachable but not covered need not be equal to Reachable functions . This is because the reachability analysis is an approximation and thus at runtime some functions may be covered that are not included in the reachability analysis. This is a limitation of our static analysis capabilities.
Warning: The number of covered functions are larger than the number of reachable functions. This means that there are more functions covered at runtime than are extracted using static analysis. This is likely a result of the static analysis component failing to extract the right call graph or the coverage runtime being compiled with sanitizers in code that the static analysis has not analysed. This can happen if lto/gold is not used in all places that coverage instrumentation is used.
Function name source code lines source lines hit percentage hit

Files reached

filename functions hit
/src/openbabel/test/fuzz/fuzz_obconversion.cpp 1
/src/openbabel/src/obconversion.cpp 13
/src/openbabel/include/openbabel/lineend.h 2
/src/openbabel/src/oberror.cpp 4
/src/openbabel/include/openbabel/oberror.h 4
/src/openbabel/src/mol.cpp 4
/src/openbabel/include/openbabel/base.h 2
/src/openbabel/include/openbabel/format.h 2
/src/openbabel/src/plugin.cpp 4
/src/openbabel/include/openbabel/plugin.h 1
/src/openbabel/src/locale.cpp 2
/usr/include/stdlib.h 1
/src/openbabel/include/openbabel/mol.h 1

Fuzzer: fuzz_obconversion_smiles

Call tree

The calltree shows the control flow of the fuzzer. This is overlaid with coverage information to display how much of the potential code a fuzzer can reach is in fact covered at runtime. In the following there is a link to a detailed calltree visualisation as well as a bitmap showing a high-level view of the calltree. For further information about these topics please see the glossary for full calltree and calltree overview

Call tree overview bitmap:

The distribution of callsites in terms of coloring is
Color Runtime hitcount Callsite count Percentage
red 0 15 21.4%
gold [1:9] 6 8.57%
yellow [10:29] 0 0.0%
greenyellow [30:49] 0 0.0%
lawngreen 50+ 49 70.0%
All colors 70 100

Fuzz blockers

The followings are the branches where fuzzer fails to bypass.

Unique non-covered Complexity Unique Reachable Complexities Unique Reachable Functions All non-covered Complexity All Reachable Complexity Function Name Function Callsite Blocked Branch
285 285 5 :

['OpenBabel::visitRing(OpenBabel::OBMol*, OpenBabel::OBRing*, std::__1::vector >&, std::__1::vector >&)', 'std::__1::vector >::~vector()', 'OpenBabel::OBRing::GetParent()', 'std::__1::vector >::vector()', 'std::__1::vector >::operator=(std::__1::vector > const&)']

289 289 OpenBabel::OBRingSearch::RemoveRedundant(int) call site: 00000 /src/openbabel/src/ring.cpp:335
7 32 15 :

['bool std::__1::operator!= (std::__1::__wrap_iter const&, std::__1::__wrap_iter const&)', 'OpenBabel::OBMol::NextAtom(std::__1::__wrap_iter &)', 'OpenBabel::OBAtom::SetVector()', 'OpenBabel::OBBase::GetData(unsigned int)', 'std::__1::__wrap_iter ::operator*() const', 'std::__1::vector >::clear()', 'std::__1::vector >::end()', 'OpenBabel::OBAtom::ClearCoordPtr()', 'operator delete[](void*)', 'std::__1::__wrap_iter ::__wrap_iter()', 'OpenBabel::OBBase::DeleteData(unsigned int)', 'std::__1::__wrap_iter ::__wrap_iter()', 'std::__1::__wrap_iter ::operator++()', 'std::__1::vector >::begin()', 'OpenBabel::OBMol::BeginAtom(std::__1::__wrap_iter &)']

7 32 OpenBabel::OBMol::BeginModify() call site: 00000 /src/openbabel/src/mol.cpp:1488
6 6 1 :

['OpenBabel::OBBase::DeleteData(std::__1::basic_string , std::__1::allocator > const&)']

6 1420 OpenBabel::OBMol::FindSSSR() call site: 00000 /src/openbabel/src/ring.cpp:100
2 2 1 :

['OpenBabel::vector3::Set(double, double, double)']

2 2 OpenBabel::OBAtom::GetVector() call site: 00000 /src/openbabel/src/atom.cpp:378
0 116 3 :

['OpenBabel::OBMessageHandler::ThrowError(std::__1::basic_string , std::__1::allocator > const&, std::__1::basic_string , std::__1::allocator > const&, OpenBabel::obMessageLevel, OpenBabel::errorQualifier)', 'std::__1::basic_string , std::__1::allocator >::basic_string (char const*)', 'std::__1::basic_string , std::__1::allocator >::~basic_string()']

0 317 OpenBabel::OBMol::FindRingAtomsAndBonds() call site: 00000 /src/openbabel/src/ring.cpp:574
0 116 3 :

['OpenBabel::OBMessageHandler::ThrowError(std::__1::basic_string , std::__1::allocator > const&, std::__1::basic_string , std::__1::allocator > const&, OpenBabel::obMessageLevel, OpenBabel::errorQualifier)', 'std::__1::basic_string , std::__1::allocator >::basic_string (char const*)', 'std::__1::basic_string , std::__1::allocator >::~basic_string()']

0 122 OpenBabel::OBMol::Clear() call site: 00000 /src/openbabel/src/mol.cpp:1440
0 116 3 :

['OpenBabel::OBMessageHandler::ThrowError(std::__1::basic_string , std::__1::allocator > const&, std::__1::basic_string , std::__1::allocator > const&, OpenBabel::obMessageLevel, OpenBabel::errorQualifier)', 'std::__1::basic_string , std::__1::allocator >::basic_string (char const*)', 'std::__1::basic_string , std::__1::allocator >::~basic_string()']

0 116 OpenBabel::OBMol::EndModify(bool) call site: 00000 /src/openbabel/src/mol.cpp:1518
0 116 3 :

['OpenBabel::OBMessageHandler::ThrowError(std::__1::basic_string , std::__1::allocator > const&, std::__1::basic_string , std::__1::allocator > const&, OpenBabel::obMessageLevel, OpenBabel::errorQualifier)', 'std::__1::basic_string , std::__1::allocator >::basic_string (char const*)', 'std::__1::basic_string , std::__1::allocator >::~basic_string()']

0 116 OpenBabel::OBMol::AddBond(int,int,int,int,int) call site: 00000 /src/openbabel/src/mol.cpp:2534
0 35 1 :

['OpenBabel::OBPlugin::LoadAllPlugins()']

0 65 OpenBabel::OBPlugin::GetTypeMap(charconst*) call site: 00000 /src/openbabel/src/plugin.cpp:34
0 0 None 7 10 OpenBabel::OBMol::AddBond(int,int,int,int,int) call site: 00000 /src/openbabel/src/mol.cpp:2521
0 0 None 4 122 OpenBabel::OBCisTransStereo::SetConfig(OpenBabel::OBCisTransStereo::Configconst&) call site: 00000 /src/openbabel/src/stereo/cistrans.cpp:99
0 0 None 4 122 OpenBabel::OBCisTransStereo::SetConfig(OpenBabel::OBCisTransStereo::Configconst&) call site: 00000 /src/openbabel/src/stereo/cistrans.cpp:105

Runtime coverage analysis

Covered functions
624
Functions that are reachable but not covered
19
Reachable functions
85
Percentage of reachable functions covered
77.65%
NB: The sum of covered functions and functions that are reachable but not covered need not be equal to Reachable functions . This is because the reachability analysis is an approximation and thus at runtime some functions may be covered that are not included in the reachability analysis. This is a limitation of our static analysis capabilities.
Warning: The number of covered functions are larger than the number of reachable functions. This means that there are more functions covered at runtime than are extracted using static analysis. This is likely a result of the static analysis component failing to extract the right call graph or the coverage runtime being compiled with sanitizers in code that the static analysis has not analysed. This can happen if lto/gold is not used in all places that coverage instrumentation is used.
Function name source code lines source lines hit percentage hit

Files reached

filename functions hit
/src/openbabel/test/fuzz/fuzz_obconversion.cpp 1
/src/openbabel/src/obconversion.cpp 13
/src/openbabel/include/openbabel/lineend.h 2
/src/openbabel/src/oberror.cpp 4
/src/openbabel/include/openbabel/oberror.h 4
/src/openbabel/src/mol.cpp 4
/src/openbabel/include/openbabel/base.h 2
/src/openbabel/include/openbabel/format.h 2
/src/openbabel/src/plugin.cpp 4
/src/openbabel/include/openbabel/plugin.h 1
/src/openbabel/src/locale.cpp 2
/usr/include/stdlib.h 1
/src/openbabel/include/openbabel/mol.h 1

Analyses and suggestions

Optimal target analysis

Remaining optimal interesting functions

The following table shows a list of functions that are optimal targets. Optimal targets are identified by finding the functions that in combination, yield a high code coverage.

Func name Functions filename Arg count Args Function depth hitcount instr count bb count cyclomatic complexity Reachable functions Incoming references total cyclomatic complexity Unreached complexity
OpenBabel::MDLFormat::ReadMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*) /src/openbabel/src/formats/mdlformat.cpp 3 ['class.OpenBabel::MDLFormat *', 'class.OpenBabel::OBBase *', 'class.OpenBabel::OBConversion *'] 18 0 4424 939 802 1589 0 12401 12099
OpenBabel::GAMESSOutputFormat::ReadMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*) /src/openbabel/src/formats/gamessformat.cpp 3 ['class.OpenBabel::GAMESSOutputFormat *', 'class.OpenBabel::OBBase *', 'class.OpenBabel::OBConversion *'] 16 0 3761 775 645 1341 0 11701 4537
OpenBabel::MCDLFormat::ReadMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*) /src/openbabel/src/formats/MCDLformat.cpp 3 ['class.OpenBabel::MCDLFormat *', 'class.OpenBabel::OBBase *', 'class.OpenBabel::OBConversion *'] 27 0 154 29 27 1398 0 10508 2741
OpenBabel::CIFFormat::ReadMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*) /src/openbabel/src/formats/cifformat.cpp 3 ['class.OpenBabel::CIFFormat *', 'class.OpenBabel::OBBase *', 'class.OpenBabel::OBConversion *'] 16 0 1573 327 250 1447 0 10113 2104
OpenBabel::OpGen3D::Do(OpenBabel::OBBase*,charconst*,std::__1::map ,std::__1::allocator >,std::__1::basic_string ,std::__1::allocator >,std::__1::less ,std::__1::allocator >>,std::__1::allocator ,std::__1::allocator >const,std::__1::basic_string ,std::__1::allocator >>>>const*,OpenBabel::OBConversion*) /src/openbabel/src/ops/gen3d.cpp 5 ['class.OpenBabel::OpGen3D *', 'class.OpenBabel::OBBase *', 'char *', 'class.std::__1::map *', 'class.OpenBabel::OBConversion *'] 16 0 542 124 4 1689 0 11060 2085
OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*) /src/openbabel/src/formats/svgformat.cpp 2 ['class.OpenBabel::SVGFormat *', 'class.OpenBabel::OBConversion *'] 24 0 338 63 25 1317 0 7947 1393
OpenBabel::MCDLFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*) /src/openbabel/src/formats/MCDLformat.cpp 3 ['class.OpenBabel::MCDLFormat *', 'class.OpenBabel::OBBase *', 'class.OpenBabel::OBConversion *'] 25 0 125 24 22 1218 0 8124 1384

Implementing fuzzers that target the above functions will improve reachability such that it becomes:

Functions statically reachable by fuzzers
27.0%
1187 / 4458
Cyclomatic complexity statically reachable by fuzzers
37.0%
26551 / 72577

All functions overview

If you implement fuzzers for these functions, the status of all functions in the project will be:

Func name Functions filename Args Function call depth Reached by Fuzzers Fuzzers runtime hit Func lines hit % I Count BB Count Cyclomatic complexity Functions reached Reached by functions Accumulated cyclomatic complexity Undiscovered complexity

Runtime coverage analysis

This section shows analysis of runtime coverage data.

For futher technical details on how this section is generated, please see the Glossary .

Complex functions with low coverage

Func name Function total lines Lines covered at runtime percentage covered Reached by fuzzers
OpenBabel::AliasData::FromNameLookup(OpenBabel::OBMol&,unsignedint) 69 6 8.695% []
OpenBabel::OBChainsParser::IdentifyElement(char*) 275 13 4.727% []
OpenBabel::MDLFormat::TetStereoFromParity(OpenBabel::OBMol&,std::__1::vector >&,bool) 35 6 17.14% []
OpenBabel::MDLFormat::CisTransFromUpDown(OpenBabel::OBMol*,std::__1::map ,std::__1::allocator >>*) 50 5 10.0% []
OpenBabel::OBMol::NewAtom(unsignedlong) 48 26 54.16% []
OpenBabel::OBSmartsPattern::ParseSimpleAtomPrimitive() 59 19 32.20% []
OpenBabel::OBSmartsPattern::ParseComplexAtomPrimitive() 476 179 37.60% []
OpenBabel::OBSmartsPattern::SMARTSParser(OpenBabel::Pattern*,OpenBabel::ParseState*,int,int) 177 72 40.67% []
OpenBabel::OBSmartsPattern::Match(OpenBabel::OBMol&,std::__1::vector >,std::__1::allocator >>>&,OpenBabel::OBSmartsPattern::MatchType)const 40 8 20.0% []
OpenBabel::OBSmartsMatcher::match(OpenBabel::OBMol&,OpenBabel::Patternconst*,std::__1::vector >,std::__1::allocator >>>&,bool) 69 11 15.94% []
OpenBabel::OBSmartsMatcher::EvalAtomExpr(OpenBabel::_AtomExpr*,OpenBabel::OBAtom*) 84 40 47.61% []
OpenBabel::OBSSMatch::Match(std::__1::vector >,std::__1::allocator >>>&,int) 52 10 19.23% []
OpenBabel::FindStereogenicUnits(OpenBabel::OBMol*,std::__1::vector >const&) 308 4 1.298% []
OpenBabel::TetrahedralFrom0D(OpenBabel::OBMol*,std::__1::vector >const&,bool) 52 11 21.15% []
OpenBabel::CisTransFrom0D(OpenBabel::OBMol*,std::__1::vector >const&,bool) 94 13 13.82% []
OpenBabel::OBAtomTyper::ParseLine(charconst*) 42 20 47.61% []

Files and Directories in report

This section shows which files and directories are considered in this report. The main reason for showing this is fuzz introspector may include more code in the reasoning than is desired. This section helps identify if too many files/directories are included, e.g. third party code, which may be irrelevant for the threat model. In the event too much is included, fuzz introspector supports a configuration file that can exclude data from the report. See the following link for more information on how to create a config file: link

Files in report

Source file Reached by Covered by
[] []
/src/openbabel/src/formats/mmodformat.cpp [] []
/src/openbabel/include/openbabel/bondtyper.h [] []
/src/openbabel/src/ops/delnonpolarh.cpp [] []
/src/openbabel/src/bitvec.cpp [] []
/src/openbabel/include/openbabel/data.h [] []
/src/openbabel/src/formats/APIInterface.cpp [] []
/src/openbabel/src/formats/turbomoleformat.cpp [] []
/src/openbabel/src/formats/xyzformat.cpp [] []
/src/openbabel/src/formats/hinformat.cpp [] []
/src/openbabel/src/residue.cpp [] []
/src/openbabel/src/formats/genbankformat.cpp [] []
/src/openbabel/src/formats/cifformat.cpp [] []
/src/openbabel/src/forcefields/forcefieldghemical.h [] []
/src/openbabel/include/openbabel/bitvec.h [] []
/src/openbabel/src/data.cpp [] []
/src/openbabel/src/forcefields/forcefieldmmff94.cpp [] []
/src/openbabel/src/transform.cpp [] []
/src/openbabel/src/formats/gaussformat.cpp [] []
/src/openbabel/src/obmolecformat.cpp [] []
/src/openbabel/include/openbabel/alias.h [] []
/src/openbabel/src/formats/opendxformat.cpp [] []
/src/openbabel/src/grid.cpp [] []
/src/openbabel/src/formats/fastsearchformat.cpp [] []
/src/openbabel/src/ops/gen2D.cpp [] []
/src/openbabel/src/formats/bgfformat.cpp [] []
/src/openbabel/include/openbabel/chargemodel.h [] []
/src/openbabel/include/openbabel/isomorphism.h [] []
/src/openbabel/src/formats/fhiaimsformat.cpp [] []
/src/openbabel/src/formats/cacheformat.cpp [] []
/src/openbabel/src/math/vector3.cpp [] []
/src/openbabel/src/formats/moldenformat.cpp [] []
/src/openbabel/include/openbabel/obiter.h [] []
/src/openbabel/include/openbabel/obutil.h [] []
/src/openbabel/include/openbabel/mol.h ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles'] ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles']
/src/openbabel/src/formats/fingerprintformat.cpp [] []
/src/openbabel/src/graphsym.cpp [] []
/src/openbabel/src/ops/addpolarh.cpp [] []
/src/openbabel/src/stereo/tetranonplanar.cpp [] []
/src/openbabel/include/openbabel/stereo/tetraplanar.h [] []
/src/openbabel/src/ops/readconformers.cpp [] []
/src/openbabel/src/formats/MCDLformat.cpp [] []
/src/openbabel/src/formats/mdlvalence.h [] []
/src/openbabel/src/formats/chemkinformat.cpp [] []
/src/openbabel/src/formats/smilesvalence.h [] []
/src/openbabel/src/formats/pdbformat.cpp [] []
/src/openbabel/src/formats/textformat.cpp [] []
/src/openbabel/src/formats/gulpformat.cpp [] []
/src/openbabel/src/ops/addnonpolarh.cpp [] []
/src/openbabel/src/chains.cpp [] []
/src/openbabel/src/formats/chem3dformat.cpp [] []
/src/openbabel/src/fingerprint.cpp [] []
/src/openbabel/src/stereo/cistrans.cpp [] []
/src/openbabel/include/openbabel/op.h [] []
/src/openbabel/src/formats/chemdrawcdx.cpp [] []
/src/openbabel/src/kekulize.cpp [] []
/src/openbabel/src/formats/viewmolformat.cpp [] []
/src/openbabel/src/formats/alchemyformat.cpp [] []
/src/openbabel/src/stereo/gen3dstereohelper.cpp [] []
/usr/include/stdlib.h ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles'] []
/src/openbabel/src/rand.cpp [] []
/src/openbabel/src/formats/fchkformat.cpp [] []
/src/openbabel/src/forcefields/forcefielduff.cpp [] []
/src/openbabel/src/formats/acesformat.cpp [] []
/src/openbabel/src/formats/pcmodelformat.cpp [] []
/src/openbabel/src/ops/addinindex.cpp [] []
/src/openbabel/src/formats/tinkerformat.cpp [] []
/usr/include/x86_64-linux-gnu/bits/stdlib-float.h [] []
/src/openbabel/src/formats/mpqcformat.cpp [] []
/src/openbabel/src/formats/chemtoolformat.cpp [] []
/src/openbabel/src/bond.cpp [] []
/src/openbabel/src/ops/opisomorph.h [] []
/src/openbabel/src/formats/crkformat.cpp [] []
/src/openbabel/src/formats/featformat.cpp [] []
/src/openbabel/src/obiter.cpp [] []
/src/openbabel/src/formats/freefracformat.cpp [] []
/usr/local/bin/../include/c++/v1/math.h [] []
/src/openbabel/include/openbabel/ring.h [] []
/src/openbabel/src/formats/CSRformat.cpp [] []
/src/openbabel/src/formats/jaguarformat.cpp [] []
/src/openbabel/src/formats/mpdformat.cpp [] []
/src/openbabel/src/elements.cpp [] []
/src/openbabel/include/openbabel/phmodel.h [] []
/src/openbabel/src/descriptor.cpp [] []
/src/openbabel/src/forcefields/forcefieldghemical.cpp [] []
/src/openbabel/src/formats/pwscfformat.cpp [] []
/src/openbabel/src/formats/dmolformat.cpp [] []
/src/openbabel/src/formats/fastaformat.cpp [] []
/src/openbabel/test/fuzz/fuzz_obconversion.cpp ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles'] ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles']
/src/openbabel/src/depict/svgpainter.cpp [] []
/src/openbabel/src/formats/gamessformat.cpp [] []
/src/openbabel/include/openbabel/math/vector3.h [] []
/src/openbabel/include/openbabel/forcefield.h [] []
/src/openbabel/src/forcefields/forcefieldmmff94.h [] []
/src/openbabel/src/base.cpp [] []
/src/openbabel/src/parsmart.cpp [] []
/src/openbabel/src/formats/outformat.cpp [] []
/src/openbabel/src/formats/shelxformat.cpp [] []
/src/openbabel/src/depict/depict.cpp [] []
/src/openbabel/src/generic.cpp [] []
/src/openbabel/src/chargemodel.cpp [] []
/src/openbabel/include/openbabel/rotor.h [] []
/src/openbabel/src/griddata.cpp [] []
/src/openbabel/src/forcefield.cpp [] []
/src/openbabel/src/formats/PQSformat.cpp [] []
/src/openbabel/src/ops/sort.cpp [] []
/src/openbabel/src/formats/mmcifformat.cpp [] []
/src/openbabel/include/openbabel/oberror.h ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles'] ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles']
/src/openbabel/include/openbabel/stereo/squareplanar.h [] []
/src/openbabel/src/typer.cpp [] []
/src/openbabel/src/locale.cpp ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles'] ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles']
/src/openbabel/src/formats/acrformat.cpp [] []
/src/openbabel/include/openbabel/kinetics.h [] []
/src/openbabel/src/formats/svgformat.cpp [] []
/src/openbabel/src/formats/dlpolyformat.cpp [] []
/src/openbabel/src/formats/adfformat.cpp [] []
/src/openbabel/src/formats/groformat.cpp [] []
/src/openbabel/src/fingerprints/fingerecfp.cpp [] []
/usr/local/bin/../include/c++/v1/iosfwd [] []
/src/openbabel/include/openbabel/parsmart.h [] []
/src/openbabel/src/ops/deferred.h [] []
/src/openbabel/src/stereo/tetrahedral.cpp [] []
/src/openbabel/src/formats/titleformat.cpp [] []
/src/openbabel/src/formats/msmsformat.cpp [] []
/src/openbabel/src/forcefields/forcefielduff.h [] []
/src/openbabel/src/math/matrix3x3.cpp [] []
/usr/local/bin/../include/c++/v1/stdexcept [] []
/src/openbabel/src/atom.cpp [] []
/src/openbabel/src/formats/amberformat.cpp [] []
/src/openbabel/src/formats/rxnformat.cpp [] []
/src/openbabel/include/openbabel/obconversion.h [] []
/usr/local/bin/../include/c++/v1/stdlib.h [] []
/src/openbabel/src/alias.cpp [] []
/src/openbabel/src/stereo/perception.cpp [] []
/src/openbabel/include/openbabel/atom.h [] []
/src/openbabel/src/charges/mmff94.cpp [] []
/src/openbabel/include/openbabel/rotamer.h [] []
/src/openbabel/include/openbabel/query.h [] []
/src/openbabel/src/charges/gasteiger.cpp [] []
/src/openbabel/include/openbabel/internalcoord.h [] []
/src/openbabel/src/formats/yasaraformat.cpp [] []
/src/openbabel/include/openbabel/math/spacegroup.h [] []
/usr/include/ctype.h [] []
/src/openbabel/src/formats/ghemicalformat.cpp [] []
/src/openbabel/src/mol.cpp ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles'] ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles']
/src/openbabel/include/openbabel/grid.h [] []
/src/openbabel/src/charges/none.cpp [] []
/src/openbabel/src/math/spacegroup.cpp [] []
/src/openbabel/src/formats/smilesformat.cpp [] []
/src/openbabel/src/formats/nwchemformat.cpp [] []
/src/openbabel/src/descriptors/cmpdfilter.cpp [] []
/src/openbabel/src/formats/aoforceformat.cpp [] []
/src/openbabel/src/formats/gausscubeformat.cpp [] []
/src/openbabel/include/openbabel/fingerprint.h [] []
/src/openbabel/src/formats/balstformat.cpp [] []
/src/openbabel/src/obfunctions.cpp [] []
/src/openbabel/include/openbabel/reaction.h [] []
/src/openbabel/src/forcefields/forcefieldgaff.cpp [] []
/src/openbabel/src/formats/xsfformat.cpp [] []
/src/openbabel/src/rotor.cpp [] []
/src/openbabel/src/molchrg.cpp [] []
/src/openbabel/include/openbabel/obmolecformat.h [] []
/src/openbabel/include/openbabel/stereo/stereo.h [] []
/src/openbabel/src/descriptors/smartsdescriptors.cpp [] []
/src/openbabel/src/isomorphism.cpp [] []
/src/openbabel/src/formats/MNAformat.cpp [] []
/src/openbabel/src/descriptors/cansmidescriptor.cpp [] []
/src/openbabel/src/canon.cpp [] []
/src/openbabel/include/openbabel/tokenst.h [] []
/src/openbabel/src/formats/msiformat.cpp [] []
/src/openbabel/src/ops/xout.cpp [] []
/src/openbabel/src/formats/reportformat.cpp [] []
/src/openbabel/src/formats/cccformat.cpp [] []
/src/openbabel/include/openbabel/descriptor.h [] []
/src/openbabel/include/openbabel/typer.h [] []
/src/openbabel/include/openbabel/math/matrix3x3.h [] []
/src/openbabel/include/openbabel/plugin.h ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles'] ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles']
/src/openbabel/src/formats/vaspformat.cpp [] []
/src/openbabel/include/openbabel/groupcontrib.h [] []
/src/openbabel/src/formats/stlformat.cpp [] []
/src/openbabel/src/formats/pqrformat.cpp [] []
/src/openbabel/src/fingerprints/finger3.cpp [] []
/src/openbabel/src/formats/chemdrawct.cpp [] []
/src/openbabel/include/openbabel/bond.h [] []
/src/openbabel/src/forcefields/forcefieldgaff.h [] []
/src/openbabel/src/formats/gromos96format.cpp [] []
/src/openbabel/src/formats/molproformat.cpp [] []
/src/openbabel/src/descriptors/filters.cpp [] []
/src/openbabel/include/openbabel/residue.h [] []
/src/openbabel/src/formats/exyzformat.cpp [] []
/src/openbabel/src/formats/rsmiformat.cpp [] []
/src/openbabel/src/formats/xedformat.cpp [] []
/src/openbabel/src/ops/fillUC.cpp [] []
/src/openbabel/src/ops/forcefield.cpp [] []
/src/openbabel/src/ops/../stereo/gen3dstereohelper.h [] []
/src/openbabel/src/format.cpp [] []
/src/openbabel/src/query.cpp [] []
/src/openbabel/src/tokenst.cpp [] []
/src/openbabel/include/openbabel/builder.h [] []
/src/openbabel/src/formats/pointcloudformat.cpp [] []
/src/openbabel/include/openbabel/format.h ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles'] ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles']
/src/openbabel/src/formats/gausszmatformat.cpp [] []
/src/openbabel/src/formats/fhformat.cpp [] []
/src/openbabel/src/formats/castepformat.cpp [] []
/usr/local/bin/../include/c++/v1/istream [] []
/src/openbabel/include/openbabel/stereo/cistrans.h [] []
/src/openbabel/src/phmodel.cpp [] []
/src/openbabel/src/reactionfacade.cpp [] []
/src/openbabel/src/obutil.cpp [] []
/src/openbabel/src/math/transform3d.cpp [] []
/src/openbabel/src/oberror.cpp ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles'] ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles']
/src/openbabel/src/formats/povrayformat.cpp [] []
/src/openbabel/include/openbabel/generic.h [] []
/src/openbabel/src/formats/carformat.cpp [] []
/src/openbabel/include/openbabel/math/transform3d.h [] []
/src/openbabel/src/formats/molreport.cpp [] []
/src/openbabel/src/stereo/stereo.cpp [] []
/src/openbabel/src/ops/canonical.cpp [] []
/src/openbabel/src/stereo/facade.cpp [] []
/src/openbabel/src/plugin.cpp ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles'] ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles']
/src/openbabel/src/formats/unichemformat.cpp [] []
/src/openbabel/include/openbabel/stereo/tetranonplanar.h [] []
/src/openbabel/src/formats/mdlformat.cpp [] []
/src/openbabel/src/charges/fromfile.cpp [] []
/src/openbabel/include/openbabel/stereo/tetrahedral.h [] []
/src/openbabel/src/ops/gen3d.cpp [] []
/src/openbabel/src/formats/boxformat.cpp [] []
/src/openbabel/src/descriptors/inchidescriptor.cpp [] []
/src/openbabel/src/formats/pdbqtformat.cpp [] []
/src/openbabel/src/formats/zindoformat.cpp [] []
/src/openbabel/src/ring.cpp [] []
/src/openbabel/src/obconversion.cpp ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles'] ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles']
/src/openbabel/src/rotamer.cpp [] []
/src/openbabel/src/stereo/tetraplanar.cpp [] []
/src/openbabel/src/fingerprints/finger2.cpp [] []
/src/openbabel/src/formats/abinitformat.cpp [] []
/src/openbabel/include/openbabel/molchrg.h [] []
/src/openbabel/include/openbabel/inchiformat.h [] []
/src/openbabel/src/formats/mopacformat.cpp [] []
/src/openbabel/src/mcdlutil.cpp [] []
/src/openbabel/src/formats/lmpdatformat.cpp [] []
/src/openbabel/src/descriptors/groupcontrib.cpp [] []
/src/openbabel/src/formats/thermoformat.cpp [] []
/src/openbabel/src/formats/qchemformat.cpp [] []
/src/openbabel/src/formats/mol2format.cpp [] []
/src/openbabel/src/formats/copyformat.cpp [] []
/src/openbabel/src/ops/delpolarh.cpp [] []
/src/openbabel/src/stereo/squareplanar.cpp [] []
/src/openbabel/src/builder.cpp [] []
/src/openbabel/include/openbabel/lineend.h ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles'] ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles']
/src/openbabel/src/formats/cssrformat.cpp [] []
/src/openbabel/src/bondtyper.cpp [] []
/src/openbabel/include/openbabel/text.h [] []
/src/openbabel/src/formats/cacaoformat.cpp [] []
/src/openbabel/src/formats/nulformat.cpp [] []
/src/openbabel/src/ops/partialcharges.cpp [] []
/src/openbabel/include/openbabel/base.h ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles'] ['fuzz_obconversion_sdf', 'fuzz_obconversion_smiles']
/src/openbabel/include/openbabel/depict/painter.h [] []
/src/openbabel/src/ops/opisomorph.cpp [] []

Directories in report

Directory
/src/openbabel/src/ops/
/usr/local/bin/../include/c++/v1/
/usr/include/x86_64-linux-gnu/bits/
/src/openbabel/src/formats/
/src/openbabel/src/stereo/
/src/openbabel/src/fingerprints/
/src/openbabel/src/ops/../stereo/
/src/openbabel/include/openbabel/
/src/openbabel/src/
/src/openbabel/test/fuzz/
/src/openbabel/include/openbabel/depict/
/usr/include/
/src/openbabel/src/forcefields/
/src/openbabel/src/math/
/src/openbabel/src/charges/
/src/openbabel/src/descriptors/
/src/openbabel/include/openbabel/math/
/src/openbabel/src/depict/
/src/openbabel/include/openbabel/stereo/