High level conclusions

Fuzzers reach 52.44% code coverage.

Fuzzers reach 19.68% of cyclomatic complexity.

Fuzzers reach 18.49% of all functions.

Reachability and coverage overview

Functions statically reachable by fuzzers

841 / 4546

Cyclomatic complexity statically reachable by fuzzers

14288 / 72592

Runtime code coverage of functions

2384 / 4546

Warning: The number of runtime covered functions are larger than the number of reachable functions. This means that Fuzz Introspector found there are more functions covered at runtime than what is considered reachable based on the static analysis. This is a limitation in the analysis as anything covered at runtime is by definition reachable by the fuzzers.
This is likely due to a limitation in the static analysis. In this case, the count of functions covered at runtime is the true value, which means this is what should be considered "achieved" by the fuzzer.

Use the project functions table below to query all functions that were not covered at runtime.

The following table shows data about each function in the project. The functions included in this table correspond to all functions that exist in the executables of the fuzzers. As such, there may be functions that are from third-party libraries.

For further technical details on the meaning of columns in the below table, please see the Glossary .

Func name	Functions filename	Args	Function call depth	Reached by Fuzzers	Runtime reached by Fuzzers	Combined reached by Fuzzers	Fuzzers runtime hit	Func lines hit %	I Count	BB Count	Cyclomatic complexity	Functions reached	Reached by functions	Accumulated cyclomatic complexity	Undiscovered complexity

Fuzzer: fuzz_obconversion_smiles

Call tree

The calltree shows the control flow of the fuzzer. This is overlaid with coverage information to display how much of the potential code a fuzzer can reach is in fact covered at runtime. In the following there is a link to a detailed calltree visualisation as well as a bitmap showing a high-level view of the calltree. For further information about these topics please see the glossary for full calltree and calltree overview

Call tree overview bitmap:

The distribution of callsites in terms of coloring is

Color	Runtime hitcount	Callsite count	Percentage
red	0	58	47.1%
gold	[1:9]	7	5.69%
yellow	[10:29]	0	0.0%
greenyellow	[30:49]	0	0.0%
lawngreen	50+	58	47.1%
All colors	123	100

Fuzz blockers

The following nodes represent call sites where fuzz blockers occur.

Amount of callsites blocked	Calltree index	Parent function	Callsite	Largest blocked function
25	2	OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)	call site: 00002	inflateInit2_
12	30	OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)	call site: 00030	deflateInit2_
6	67	OpenBabel::OBConversion::FindFormat(char const*)	call site: 00067	__cxa_guard_acquire
5	76	OpenBabel::OBPlugin::GetPlugin(char const*, char const*)	call site: 00076	__cxa_guard_acquire
4	88	OpenBabel::OBPlugin::GetPlugin(char const*, char const*)	call site: 00088	abort
2	95	OpenBabel::OBConversion::ReadString(OpenBabel::OBBase*, std::__1::basic_string , std::__1::allocator >)	call site: 00095
1	49	OpenBabel::OBConversion::RegisterOptionParam(std::__1::basic_string , std::__1::allocator >, OpenBabel::OBFormat*, int, OpenBabel::OBConversion::Option_type)	call site: 00049
1	62	LLVMFuzzerTestOneInput	call site: 00062
1	103	OpenBabel::OBConversion::SetStartAndEnd()	call site: 00103	atoi
1	105	OpenBabel::OBConversion::SetStartAndEnd()	call site: 00105	atoi

Runtime coverage analysis

Covered functions

621

Functions that are reachable but not covered

45

Reachable functions

115

Percentage of reachable functions covered

60.87%

NB: The sum of covered functions and functions that are reachable but not covered need not be equal to Reachable functions . This is because the reachability analysis is an approximation and thus at runtime some functions may be covered that are not included in the reachability analysis. This is a limitation of our static analysis capabilities.

Warning: The number of covered functions are larger than the number of reachable functions. This means that there are more functions covered at runtime than are extracted using static analysis. This is likely a result of the static analysis component failing to extract the right call graph or the coverage runtime being compiled with sanitizers in code that the static analysis has not analysed. This can happen if lto/gold is not used in all places that coverage instrumentation is used.

Function name	source code lines	source lines hit	percentage hit

Files reached

filename	functions hit
/src/openbabel/test/fuzz/fuzz_obconversion.cpp	1
/src/openbabel/src/obconversion.cpp	13
/src/openbabel/src/zipstreamimpl.h	14
/src/openbabel/include/openbabel/lineend.h	2
/src/openbabel/src/oberror.cpp	4
/src/openbabel/include/openbabel/oberror.h	4
/src/openbabel/src/mol.cpp	6
/src/openbabel/include/openbabel/base.h	2
/src/openbabel/include/openbabel/format.h	3
/src/openbabel/src/plugin.cpp	4
/src/openbabel/include/openbabel/plugin.h	1
/src/openbabel/src/zipstream.h	1
/src/openbabel/src/locale.cpp	2
/src/openbabel/include/openbabel/mol.h	2

Fuzzer: fuzz_obconversion_sdf

Call tree

The calltree shows the control flow of the fuzzer. This is overlaid with coverage information to display how much of the potential code a fuzzer can reach is in fact covered at runtime. In the following there is a link to a detailed calltree visualisation as well as a bitmap showing a high-level view of the calltree. For further information about these topics please see the glossary for full calltree and calltree overview

Call tree overview bitmap:

The distribution of callsites in terms of coloring is

Color	Runtime hitcount	Callsite count	Percentage
red	0	58	47.1%
gold	[1:9]	7	5.69%
yellow	[10:29]	0	0.0%
greenyellow	[30:49]	0	0.0%
lawngreen	50+	58	47.1%
All colors	123	100

Fuzz blockers

The following nodes represent call sites where fuzz blockers occur.

Amount of callsites blocked	Calltree index	Parent function	Callsite	Largest blocked function
25	2	OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)	call site: 00002	inflateInit2_
12	30	OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)	call site: 00030	deflateInit2_
6	67	OpenBabel::OBConversion::FindFormat(char const*)	call site: 00067	__cxa_guard_acquire
5	76	OpenBabel::OBPlugin::GetPlugin(char const*, char const*)	call site: 00076	__cxa_guard_acquire
4	88	OpenBabel::OBPlugin::GetPlugin(char const*, char const*)	call site: 00088	abort
2	95	OpenBabel::OBConversion::ReadString(OpenBabel::OBBase*, std::__1::basic_string , std::__1::allocator >)	call site: 00095
1	49	OpenBabel::OBConversion::RegisterOptionParam(std::__1::basic_string , std::__1::allocator >, OpenBabel::OBFormat*, int, OpenBabel::OBConversion::Option_type)	call site: 00049
1	62	LLVMFuzzerTestOneInput	call site: 00062
1	103	OpenBabel::OBConversion::SetStartAndEnd()	call site: 00103	atoi
1	105	OpenBabel::OBConversion::SetStartAndEnd()	call site: 00105	atoi

Runtime coverage analysis

Covered functions

805

Functions that are reachable but not covered

45

Reachable functions

115

Percentage of reachable functions covered

60.87%

NB: The sum of covered functions and functions that are reachable but not covered need not be equal to Reachable functions . This is because the reachability analysis is an approximation and thus at runtime some functions may be covered that are not included in the reachability analysis. This is a limitation of our static analysis capabilities.

Warning: The number of covered functions are larger than the number of reachable functions. This means that there are more functions covered at runtime than are extracted using static analysis. This is likely a result of the static analysis component failing to extract the right call graph or the coverage runtime being compiled with sanitizers in code that the static analysis has not analysed. This can happen if lto/gold is not used in all places that coverage instrumentation is used.

Function name	source code lines	source lines hit	percentage hit

Files reached

filename	functions hit
/src/openbabel/test/fuzz/fuzz_obconversion.cpp	1
/src/openbabel/src/obconversion.cpp	13
/src/openbabel/src/zipstreamimpl.h	14
/src/openbabel/include/openbabel/lineend.h	2
/src/openbabel/src/oberror.cpp	4
/src/openbabel/include/openbabel/oberror.h	4
/src/openbabel/src/mol.cpp	6
/src/openbabel/include/openbabel/base.h	2
/src/openbabel/include/openbabel/format.h	3
/src/openbabel/src/plugin.cpp	4
/src/openbabel/include/openbabel/plugin.h	1
/src/openbabel/src/zipstream.h	1
/src/openbabel/src/locale.cpp	2
/src/openbabel/include/openbabel/mol.h	2

Fuzzer: fuzz_smart

Call tree

The calltree shows the control flow of the fuzzer. This is overlaid with coverage information to display how much of the potential code a fuzzer can reach is in fact covered at runtime. In the following there is a link to a detailed calltree visualisation as well as a bitmap showing a high-level view of the calltree. For further information about these topics please see the glossary for full calltree and calltree overview

Call tree overview bitmap:

The distribution of callsites in terms of coloring is

Color	Runtime hitcount	Callsite count	Percentage
red	0	2359	67.7%
gold	[1:9]	21	0.60%
yellow	[10:29]	10	0.28%
greenyellow	[30:49]	6	0.17%
lawngreen	50+	1084	31.1%
All colors	3480	100

Fuzz blockers

The following nodes represent call sites where fuzz blockers occur.

Amount of callsites blocked	Calltree index	Parent function	Callsite	Largest blocked function
598	1915	OpenBabel::OBTetrahedralStereo::OBTetrahedralStereo(OpenBabel::OBMol*)	call site: 01915	sqrt
408	1378	OpenBabel::OBBond::IsAromatic() const	call site: 01378	__dynamic_cast
255	2726	OpenBabel::OBCisTransStereo::OBCisTransStereo(OpenBabel::OBMol*)	call site: 02726	atan2
207	2516	OpenBabel::OBAtom::GetBond(OpenBabel::OBAtom*)	call site: 02516	sqrt
193	3234	OpenBabel::OBChainsParser::ClearResidueInformation(OpenBabel::OBMol&)	call site: 03234	toupper
124	1787	OpenBabel::OBBase::GetData(unsigned int)	call site: 01787
74	1299	OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const*)	call site: 01299	__dynamic_cast
45	741	OpenBabel::OBTetrahedralStereo::SetConfig(OpenBabel::OBTetrahedralStereo::Config const&)	call site: 00741	__dynamic_cast
40	3007	OpenBabel::OBSmartsMatcher::match(OpenBabel::OBMol&, OpenBabel::Pattern const*, std::__1::vector >, std::__1::allocator > > >&, bool)	call site: 03007
37	3128	OpenBabel::OBSmartsPattern::Match(OpenBabel::OBMol&, bool)	call site: 03128
25	6	OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)	call site: 00006	inflateInit2_
23	618	OpenBabel::OBGlobalDataBase::Init()	call site: 00618

Runtime coverage analysis

Covered functions

748

Functions that are reachable but not covered

483

Reachable functions

1248

Percentage of reachable functions covered

61.3%

NB: The sum of covered functions and functions that are reachable but not covered need not be equal to Reachable functions . This is because the reachability analysis is an approximation and thus at runtime some functions may be covered that are not included in the reachability analysis. This is a limitation of our static analysis capabilities.

Function name	source code lines	source lines hit	percentage hit

Files reached

filename	functions hit
/src/openbabel/test/fuzz/fuzz_smart.cpp	1
/src/openbabel/include/openbabel/oberror.h	6
/src/openbabel/src/mol.cpp	42
/src/openbabel/include/openbabel/base.h	18
/src/openbabel/src/obconversion.cpp	13
/src/openbabel/src/zipstreamimpl.h	14
/src/openbabel/include/openbabel/lineend.h	2
/src/openbabel/src/oberror.cpp	4
/src/openbabel/include/openbabel/format.h	3
/src/openbabel/src/plugin.cpp	4
/src/openbabel/include/openbabel/plugin.h	1
/src/openbabel/src/zipstream.h	1
/src/openbabel/src/locale.cpp	2
/src/openbabel/include/openbabel/parsmart.h	6
/src/openbabel/src/parsmart.cpp	49
/src/openbabel/include/openbabel/bitvec.h	11
/src/openbabel/src/bitvec.cpp	13
/src/openbabel/include/openbabel/mol.h	39
/src/openbabel/include/openbabel/atom.h	35
/src/openbabel/src/atom.cpp	30
/src/openbabel/include/openbabel/math/vector3.h	22
/src/openbabel/src/base.cpp	11
/src/openbabel/include/openbabel/generic.h	6
/src/openbabel/include/openbabel/bond.h	26
/src/openbabel/src/bond.cpp	7
/src/openbabel/src/generic.cpp	11
/src/openbabel/src/residue.cpp	19
/src/openbabel/src/phmodel.cpp	8
/src/openbabel/include/openbabel/data.h	2
/src/openbabel/include/openbabel/phmodel.h	1
/src/openbabel/src/data.cpp	1
/src/openbabel/src/tokenst.cpp	1
/src/openbabel/src/stereo/perception.cpp	45
/src/openbabel/src/stereo/cistrans.cpp	7
/src/openbabel/include/openbabel/stereo/cistrans.h	4
/src/openbabel/include/openbabel/stereo/tetraplanar.h	2
/src/openbabel/src/stereo/stereo.cpp	4
/src/openbabel/src/stereo/tetrahedral.cpp	5
/src/openbabel/include/openbabel/stereo/tetrahedral.h	6
/src/openbabel/include/openbabel/stereo/tetranonplanar.h	1
/src/openbabel/src/typer.cpp	17
/src/openbabel/include/openbabel/typer.h	2
/src/openbabel/include/openbabel/obiter.h	5
/src/openbabel/src/ring.cpp	23
/src/openbabel/include/openbabel/ring.h	10
/src/openbabel/include/openbabel/stereo/stereo.h	6
/src/openbabel/src/stereo/facade.cpp	4
/src/openbabel/src/graphsym.cpp	16
/src/openbabel/src/math/matrix3x3.cpp	5
/src/openbabel/include/openbabel/math/matrix3x3.h	5
/src/openbabel/src/stereo/tetranonplanar.cpp	1
/src/openbabel/src/builder.cpp	1
/src/openbabel/src/math/vector3.cpp	4
/src/openbabel/src/math/../rand.h	4
/src/openbabel/src/rand.cpp	1
/src/openbabel/src/stereo/tetraplanar.cpp	1
/src/openbabel/src/stereo/squareplanar.cpp	2
/src/openbabel/include/openbabel/stereo/squareplanar.h	3
/src/openbabel/src/obfunctions.cpp	2
/src/openbabel/src/elements.cpp	2
/src/openbabel/src/chains.cpp	22

Fuzzer: fuzz_convert

Call tree

The calltree shows the control flow of the fuzzer. This is overlaid with coverage information to display how much of the potential code a fuzzer can reach is in fact covered at runtime. In the following there is a link to a detailed calltree visualisation as well as a bitmap showing a high-level view of the calltree. For further information about these topics please see the glossary for full calltree and calltree overview

Call tree overview bitmap:

The distribution of callsites in terms of coloring is

Color	Runtime hitcount	Callsite count	Percentage
red	0	72	50.0%
gold	[1:9]	55	38.1%
yellow	[10:29]	6	4.16%
greenyellow	[30:49]	0	0.0%
lawngreen	50+	11	7.63%
All colors	144	100

Fuzz blockers

The following nodes represent call sites where fuzz blockers occur.

Amount of callsites blocked	Calltree index	Parent function	Callsite	Largest blocked function
25	3	OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)	call site: 00003	inflateInit2_
12	31	OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)	call site: 00031	deflateInit2_
6	96	OpenBabel::OBConversion::FindFormat(char const*)	call site: 00096	__cxa_guard_acquire
5	69	OpenBabel::OBPlugin::GetPlugin(char const*, char const*)	call site: 00069	__cxa_guard_acquire
4	54	OpenBabel::OBMessageHandler::ThrowError(std::__1::basic_string , std::__1::allocator > const&, std::__1::basic_string , std::__1::allocator > const&, OpenBabel::obMessageLevel, OpenBabel::errorQualifier)	call site: 00054
4	81	OpenBabel::OBPlugin::GetPlugin(char const*, char const*)	call site: 00081
3	121	OpenBabel::OBConversion::Convert()	call site: 00121	__cxa_end_catch
2	118	OpenBabel::OBConversion::SetStartAndEnd()	call site: 00118	atoi
2	130	OpenBabel::OBConversion::Convert(std::__1::basic_istream >*, std::__1::basic_ostream >*)	call site: 00130	__dynamic_cast
2	134	OpenBabel::OBConversion::Convert(std::__1::basic_istream >*, std::__1::basic_ostream >*)	call site: 00134	__dynamic_cast
1	50	OpenBabel::OBConversion::RegisterOptionParam(std::__1::basic_string , std::__1::allocator >, OpenBabel::OBFormat*, int, OpenBabel::OBConversion::Option_type)	call site: 00050
1	89	OpenBabel::OBPlugin::ListAsVector(char const*, char const*, std::__1::vector , std::__1::allocator >, std::__1::allocator , std::__1::allocator > > >&)	call site: 00089

Runtime coverage analysis

Covered functions

373

Functions that are reachable but not covered

53

Reachable functions

129

Percentage of reachable functions covered

58.91%

NB: The sum of covered functions and functions that are reachable but not covered need not be equal to Reachable functions . This is because the reachability analysis is an approximation and thus at runtime some functions may be covered that are not included in the reachability analysis. This is a limitation of our static analysis capabilities.

Warning: The number of covered functions are larger than the number of reachable functions. This means that there are more functions covered at runtime than are extracted using static analysis. This is likely a result of the static analysis component failing to extract the right call graph or the coverage runtime being compiled with sanitizers in code that the static analysis has not analysed. This can happen if lto/gold is not used in all places that coverage instrumentation is used.

Function name	source code lines	source lines hit	percentage hit

Files reached

filename	functions hit
/src/openbabel/test/fuzz/fuzz_convert.cpp	3
/src/openbabel/include/openbabel/oberror.h	5
/src/openbabel/src/obconversion.cpp	19
/src/openbabel/src/zipstreamimpl.h	14
/src/openbabel/include/openbabel/lineend.h	2
/src/openbabel/src/oberror.cpp	4
/src/openbabel/src/plugin.cpp	5
/src/openbabel/include/openbabel/plugin.h	1
/src/openbabel/include/openbabel/format.h	3
/src/openbabel/include/openbabel/obconversion.h	3
/src/openbabel/src/zipstream.h	1

Fuzzer: fuzz_empty_write

Call tree

The calltree shows the control flow of the fuzzer. This is overlaid with coverage information to display how much of the potential code a fuzzer can reach is in fact covered at runtime. In the following there is a link to a detailed calltree visualisation as well as a bitmap showing a high-level view of the calltree. For further information about these topics please see the glossary for full calltree and calltree overview

Call tree overview bitmap:

The distribution of callsites in terms of coloring is

Color	Runtime hitcount	Callsite count	Percentage
red	0	62	41.8%
gold	[1:9]	14	9.45%
yellow	[10:29]	0	0.0%
greenyellow	[30:49]	0	0.0%
lawngreen	50+	72	48.6%
All colors	148	100

Fuzz blockers

The following nodes represent call sites where fuzz blockers occur.

Amount of callsites blocked	Calltree index	Parent function	Callsite	Largest blocked function
27	41	OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)	call site: 00041	inflateInit2_
12	69	OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)	call site: 00069	deflateInit2_
6	103	OpenBabel::OBConversion::FindFormat(char const*)	call site: 00103	__cxa_guard_acquire
5	18	OpenBabel::OBPlugin::GetPlugin(char const*, char const*)	call site: 00018	__cxa_guard_acquire
4	30	OpenBabel::OBPlugin::GetPlugin(char const*, char const*)	call site: 00030
4	92	OpenBabel::OBMessageHandler::ThrowError(std::__1::basic_string , std::__1::allocator > const&, std::__1::basic_string , std::__1::allocator > const&, OpenBabel::obMessageLevel, OpenBabel::errorQualifier)	call site: 00092
1	2	LLVMFuzzerTestOneInput	call site: 00002
1	38	OpenBabel::OBPlugin::ListAsVector(char const*, char const*, std::__1::vector , std::__1::allocator >, std::__1::allocator , std::__1::allocator > > >&)	call site: 00038
1	88	OpenBabel::OBConversion::RegisterOptionParam(std::__1::basic_string , std::__1::allocator >, OpenBabel::OBFormat*, int, OpenBabel::OBConversion::Option_type)	call site: 00088
1	146	LLVMFuzzerTestOneInput	call site: 00146	__cxa_end_catch

Runtime coverage analysis

Covered functions

738

Functions that are reachable but not covered

54

Reachable functions

144

Percentage of reachable functions covered

62.5%

NB: The sum of covered functions and functions that are reachable but not covered need not be equal to Reachable functions . This is because the reachability analysis is an approximation and thus at runtime some functions may be covered that are not included in the reachability analysis. This is a limitation of our static analysis capabilities.

Warning: The number of covered functions are larger than the number of reachable functions. This means that there are more functions covered at runtime than are extracted using static analysis. This is likely a result of the static analysis component failing to extract the right call graph or the coverage runtime being compiled with sanitizers in code that the static analysis has not analysed. This can happen if lto/gold is not used in all places that coverage instrumentation is used.

Function name	source code lines	source lines hit	percentage hit

Files reached

filename	functions hit
/src/openbabel/test/fuzz/fuzz_empty_write.cpp	3
/src/openbabel/include/openbabel/oberror.h	5
/src/openbabel/src/mol.cpp	7
/src/openbabel/include/openbabel/base.h	4
/src/openbabel/src/tokenst.cpp	1
/src/openbabel/src/generic.cpp	2
/src/openbabel/include/openbabel/generic.h	1
/src/openbabel/src/plugin.cpp	5
/src/openbabel/include/openbabel/plugin.h	1
/src/openbabel/src/obconversion.cpp	15
/src/openbabel/src/zipstreamimpl.h	14
/src/openbabel/include/openbabel/lineend.h	2
/src/openbabel/src/oberror.cpp	4
/src/openbabel/include/openbabel/format.h	3
/src/openbabel/include/openbabel/mol.h	2
/src/openbabel/include/openbabel/obconversion.h	2
/src/openbabel/src/locale.cpp	2

Fuzzer: fuzz_molecule

Call tree

The calltree shows the control flow of the fuzzer. This is overlaid with coverage information to display how much of the potential code a fuzzer can reach is in fact covered at runtime. In the following there is a link to a detailed calltree visualisation as well as a bitmap showing a high-level view of the calltree. For further information about these topics please see the glossary for full calltree and calltree overview

Call tree overview bitmap:

The distribution of callsites in terms of coloring is

Color	Runtime hitcount	Callsite count	Percentage
red	0	1541	27.0%
gold	[1:9]	89	1.56%
yellow	[10:29]	108	1.89%
greenyellow	[30:49]	76	1.33%
lawngreen	50+	3886	68.1%
All colors	5700	100

Fuzz blockers

The following nodes represent call sites where fuzz blockers occur.

Amount of callsites blocked	Calltree index	Parent function	Callsite	Largest blocked function
177	3022	OpenBabel::OBAtom::GetResidue()	call site: 03022	toupper
145	5380	OpenBabel::OBForceField::SteepestDescentInitialize(int, double, int)	call site: 05380	acos
99	2589	OpenBabel::TetrahedralFrom2D(OpenBabel::OBMol*, std::__1::vector > const&, bool)	call site: 02589	atan2
49	2503	OpenBabel::CisTransFrom3D(OpenBabel::OBMol*, std::__1::vector > const&, bool)	call site: 02503
47	2378	OpenBabel::OBAtom::GetBond(OpenBabel::OBAtom*)	call site: 02378
42	2690	OpenBabel::CisTransFrom2D(OpenBabel::OBMol*, std::__1::vector > const&, std::__1::map , std::__1::allocator > > const*, bool)	call site: 02690
34	5345	OpenBabel::OBMolPairIter::OBMolPairIter(OpenBabel::OBMol&)	call site: 05345
32	567	OpenBabel::CalcTorsionAngle(OpenBabel::vector3 const&, OpenBabel::vector3 const&, OpenBabel::vector3 const&, OpenBabel::vector3 const&)	call site: 00567
30	2066	OpenBabel::OBBuilder::GetNewBondVector(OpenBabel::OBAtom*, double)	call site: 02066
25	10	OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)	call site: 00010	inflateInit2_
24	1111	OpenBabel::OBMol::DeleteHydrogen(OpenBabel::OBAtom*)	call site: 01111	__dynamic_cast
20	3205	OpenBabel::GetResidueNumber(char const*)	call site: 03205

Runtime coverage analysis

Covered functions

1324

Functions that are reachable but not covered

253

Reachable functions

1690

Percentage of reachable functions covered

85.03%

NB: The sum of covered functions and functions that are reachable but not covered need not be equal to Reachable functions . This is because the reachability analysis is an approximation and thus at runtime some functions may be covered that are not included in the reachability analysis. This is a limitation of our static analysis capabilities.

Function name	source code lines	source lines hit	percentage hit

Files reached

filename	functions hit
/src/openbabel/test/fuzz/fuzz_molecule.cpp	1
/src/openbabel/include/openbabel/oberror.h	6
/src/openbabel/src/mol.cpp	63
/src/openbabel/include/openbabel/base.h	18
/src/openbabel/src/obconversion.cpp	19
/src/openbabel/src/zipstreamimpl.h	14
/src/openbabel/include/openbabel/lineend.h	2
/src/openbabel/src/oberror.cpp	4
/src/openbabel/include/openbabel/format.h	3
/src/openbabel/src/plugin.cpp	4
/src/openbabel/include/openbabel/plugin.h	1
/src/openbabel/src/zipstream.h	1
/src/openbabel/src/locale.cpp	2
/src/openbabel/src/ring.cpp	24
/src/openbabel/include/openbabel/mol.h	47
/src/openbabel/src/base.cpp	13
/src/openbabel/include/openbabel/obiter.h	14
/src/openbabel/include/openbabel/atom.h	44
/src/openbabel/include/openbabel/bond.h	28
/src/openbabel/src/atom.cpp	43
/src/openbabel/src/bond.cpp	11
/src/openbabel/include/openbabel/bitvec.h	12
/src/openbabel/src/bitvec.cpp	15
/src/openbabel/include/openbabel/ring.h	10
/src/openbabel/src/generic.cpp	21
/src/openbabel/include/openbabel/generic.h	12
/src/openbabel/include/openbabel/math/vector3.h	27
/src/openbabel/src/math/matrix3x3.cpp	7
/src/openbabel/include/openbabel/math/matrix3x3.h	6
/src/openbabel/src/math/vector3.cpp	5
/src/openbabel/src/typer.cpp	21
/src/openbabel/include/openbabel/typer.h	2
/src/openbabel/include/openbabel/data.h	2
/src/openbabel/src/data.cpp	7
/src/openbabel/src/tokenst.cpp	3
/src/openbabel/src/parsmart.cpp	50
/src/openbabel/include/openbabel/parsmart.h	7
/src/openbabel/src/residue.cpp	19
/src/openbabel/src/phmodel.cpp	9
/src/openbabel/include/openbabel/phmodel.h	1
/src/openbabel/src/stereo/perception.cpp	45
/src/openbabel/src/stereo/cistrans.cpp	8
/src/openbabel/include/openbabel/stereo/cistrans.h	5
/src/openbabel/include/openbabel/stereo/tetraplanar.h	2
/src/openbabel/src/stereo/stereo.cpp	4
/src/openbabel/src/stereo/tetrahedral.cpp	5
/src/openbabel/include/openbabel/stereo/tetrahedral.h	6
/src/openbabel/include/openbabel/stereo/tetranonplanar.h	1
/src/openbabel/include/openbabel/stereo/stereo.h	6
/src/openbabel/src/stereo/facade.cpp	4
/src/openbabel/src/graphsym.cpp	16
/src/openbabel/src/stereo/tetranonplanar.cpp	1
/src/openbabel/src/builder.cpp	20
/src/openbabel/src/rand.h	4
/src/openbabel/src/rand.cpp	1
/src/openbabel/src/stereo/tetraplanar.cpp	1
/src/openbabel/src/stereo/squareplanar.cpp	2
/src/openbabel/include/openbabel/stereo/squareplanar.h	3
/src/openbabel/src/obfunctions.cpp	2
/src/openbabel/src/elements.cpp	6
/src/openbabel/src/chains.cpp	22
/src/openbabel/src/bondtyper.cpp	5
/src/openbabel/src/kekulize.cpp	13
/src/openbabel/include/openbabel/obutil.h	2
/src/openbabel/include/openbabel/builder.h	1
/src/openbabel/src/obiter.cpp	7
/src/openbabel/include/openbabel/obconversion.h	2
/src/openbabel/src/macrocycle.cpp	8
/src/openbabel/src/obutil.cpp	1
/src/openbabel/include/openbabel/forcefield.h	6
/src/openbabel/src/forcefield.cpp	29
/src/openbabel/include/openbabel/molchrg.h	3
/src/openbabel/src/molchrg.cpp	5

Optimal target analysis

Remaining optimal interesting functions

The following table shows a list of functions that are optimal targets. Optimal targets are identified by finding the functions that in combination, yield a high code coverage.

Func name	Functions filename	Arg count	Args	Function depth	hitcount	instr count	bb count	cyclomatic complexity	Reachable functions	Incoming references	total cyclomatic complexity	Unreached complexity
OpenBabel::MCDLFormat::ReadMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	/src/openbabel/src/formats/MCDLformat.cpp	3	['N/A', 'N/A', 'N/A']	46	0	136	29	27	1431	0	10023	3930
OpenBabel::CIFFormat::ReadMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	/src/openbabel/src/formats/cifformat.cpp	3	['N/A', 'N/A', 'N/A']	24	0	1450	327	250	1433	0	9353	1996
OpenBabel::MDLFormat::ReadMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	/src/openbabel/src/formats/mdlformat.cpp	3	['N/A', 'N/A', 'N/A']	37	0	4033	937	812	1635	0	12519	1706
OpenBabel::MCDLFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	/src/openbabel/src/formats/MCDLformat.cpp	3	['N/A', 'N/A', 'N/A']	44	0	112	24	22	1220	0	7810	1504
OpenBabel::SVGFormat::WriteChemObject(OpenBabel::OBConversion*)	/src/openbabel/src/formats/svgformat.cpp	2	['N/A', 'N/A']	43	0	362	72	28	1336	0	7596	1404
OpenBabel::GaussianOutputFormat::ReadMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	/src/openbabel/src/formats/gaussformat.cpp	3	['N/A', 'N/A', 'N/A']	24	0	5164	1179	1032	1416	0	8487	1342
OpenBabel::CANSMIFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	/src/openbabel/src/formats/smilesformat.cpp	3	['N/A', 'N/A', 'N/A']	40	0	13	3	2	1395	0	7417	1283

Implementing fuzzers that target the above functions will improve reachability such that it becomes:

Functions statically reachable by fuzzers

1332 / 4546

Cyclomatic complexity statically reachable by fuzzers

27419 / 72592

All functions overview

If you implement fuzzers for these functions, the status of all functions in the project will be:

Func name	Functions filename	Args	Function call depth	Reached by Fuzzers	Runtime reached by Fuzzers	Combined reached by Fuzzers	Fuzzers runtime hit	Func lines hit %	I Count	BB Count	Cyclomatic complexity	Functions reached	Reached by functions	Accumulated cyclomatic complexity	Undiscovered complexity

This sections provides heuristics that can be used as input to a fuzz engine when running a given fuzz target. The current focus is on providing input that is usable by libFuzzer.

/src/openbabel/test/fuzz/fuzz_obconversion.cpp

Dictionary

Use this with the libFuzzer -dict=DICT.file flag

Fuzzer function priority

Use one of these functions as input to libfuzzer with flag: -focus_function name

-focus_function=['OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)', 'OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)', 'OpenBabel::OBConversion::FindFormat(char const*)', 'OpenBabel::OBPlugin::GetPlugin(char const*, char const*)', 'OpenBabel::OBPlugin::GetPlugin(char const*, char const*)', 'OpenBabel::OBConversion::ReadString(OpenBabel::OBBase*, std::__1::basic_string, std::__1::allocator >)', 'OpenBabel::OBConversion::RegisterOptionParam(std::__1::basic_string, std::__1::allocator >, OpenBabel::OBFormat*, int, OpenBabel::OBConversion::Option_type)', 'LLVMFuzzerTestOneInput', 'OpenBabel::OBConversion::SetStartAndEnd()', 'OpenBabel::OBConversion::SetStartAndEnd()']

/src/openbabel/test/fuzz/fuzz_obconversion.cpp

Dictionary

Use this with the libFuzzer -dict=DICT.file flag

Fuzzer function priority

Use one of these functions as input to libfuzzer with flag: -focus_function name

-focus_function=['OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)', 'OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)', 'OpenBabel::OBConversion::FindFormat(char const*)', 'OpenBabel::OBPlugin::GetPlugin(char const*, char const*)', 'OpenBabel::OBPlugin::GetPlugin(char const*, char const*)', 'OpenBabel::OBConversion::ReadString(OpenBabel::OBBase*, std::__1::basic_string, std::__1::allocator >)', 'OpenBabel::OBConversion::RegisterOptionParam(std::__1::basic_string, std::__1::allocator >, OpenBabel::OBFormat*, int, OpenBabel::OBConversion::Option_type)', 'LLVMFuzzerTestOneInput', 'OpenBabel::OBConversion::SetStartAndEnd()', 'OpenBabel::OBConversion::SetStartAndEnd()']

/src/openbabel/test/fuzz/fuzz_smart.cpp

Dictionary

Use this with the libFuzzer -dict=DICT.file flag

Fuzzer function priority

Use one of these functions as input to libfuzzer with flag: -focus_function name

-focus_function=['OpenBabel::OBTetrahedralStereo::OBTetrahedralStereo(OpenBabel::OBMol*)', 'OpenBabel::OBBond::IsAromatic() const', 'OpenBabel::OBCisTransStereo::OBCisTransStereo(OpenBabel::OBMol*)', 'OpenBabel::OBAtom::GetBond(OpenBabel::OBAtom*)', 'OpenBabel::OBChainsParser::ClearResidueInformation(OpenBabel::OBMol&)', 'OpenBabel::OBBase::GetData(unsigned int)', 'OpenBabel::impl::MolGetAtoms(OpenBabel::OBMol const*)', 'OpenBabel::OBTetrahedralStereo::SetConfig(OpenBabel::OBTetrahedralStereo::Config const&)', 'OpenBabel::OBSmartsMatcher::match(OpenBabel::OBMol&, OpenBabel::Pattern const*, std::__1::vector >, std::__1::allocator > > >&, bool)', 'OpenBabel::OBSmartsPattern::Match(OpenBabel::OBMol&, bool)']

/src/openbabel/test/fuzz/fuzz_convert.cpp

Dictionary

Use this with the libFuzzer -dict=DICT.file flag

Fuzzer function priority

Use one of these functions as input to libfuzzer with flag: -focus_function name

-focus_function=['OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)', 'OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)', 'OpenBabel::OBConversion::FindFormat(char const*)', 'OpenBabel::OBPlugin::GetPlugin(char const*, char const*)', 'OpenBabel::OBMessageHandler::ThrowError(std::__1::basic_string, std::__1::allocator > const&, std::__1::basic_string, std::__1::allocator > const&, OpenBabel::obMessageLevel, OpenBabel::errorQualifier)', 'OpenBabel::OBPlugin::GetPlugin(char const*, char const*)', 'OpenBabel::OBConversion::Convert()', 'OpenBabel::OBConversion::SetStartAndEnd()', 'OpenBabel::OBConversion::Convert(std::__1::basic_istream >*, std::__1::basic_ostream >*)', 'OpenBabel::OBConversion::Convert(std::__1::basic_istream >*, std::__1::basic_ostream >*)']

/src/openbabel/test/fuzz/fuzz_empty_write.cpp

Dictionary

Use this with the libFuzzer -dict=DICT.file flag

Fuzzer function priority

Use one of these functions as input to libfuzzer with flag: -focus_function name

-focus_function=['OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)', 'OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)', 'OpenBabel::OBConversion::FindFormat(char const*)', 'OpenBabel::OBPlugin::GetPlugin(char const*, char const*)', 'OpenBabel::OBPlugin::GetPlugin(char const*, char const*)', 'OpenBabel::OBMessageHandler::ThrowError(std::__1::basic_string, std::__1::allocator > const&, std::__1::basic_string, std::__1::allocator > const&, OpenBabel::obMessageLevel, OpenBabel::errorQualifier)', 'LLVMFuzzerTestOneInput', 'OpenBabel::OBPlugin::ListAsVector(char const*, char const*, std::__1::vector, std::__1::allocator >, std::__1::allocator, std::__1::allocator > > >&)', 'OpenBabel::OBConversion::RegisterOptionParam(std::__1::basic_string, std::__1::allocator >, OpenBabel::OBFormat*, int, OpenBabel::OBConversion::Option_type)']

/src/openbabel/test/fuzz/fuzz_molecule.cpp

Dictionary

Use this with the libFuzzer -dict=DICT.file flag

Fuzzer function priority

Use one of these functions as input to libfuzzer with flag: -focus_function name

-focus_function=['OpenBabel::OBAtom::GetResidue()', 'OpenBabel::OBForceField::SteepestDescentInitialize(int, double, int)', 'OpenBabel::TetrahedralFrom2D(OpenBabel::OBMol*, std::__1::vector > const&, bool)', 'OpenBabel::CisTransFrom3D(OpenBabel::OBMol*, std::__1::vector > const&, bool)', 'OpenBabel::OBAtom::GetBond(OpenBabel::OBAtom*)', 'OpenBabel::CisTransFrom2D(OpenBabel::OBMol*, std::__1::vector > const&, std::__1::map, std::__1::allocator > > const*, bool)', 'OpenBabel::OBMolPairIter::OBMolPairIter(OpenBabel::OBMol&)', 'OpenBabel::CalcTorsionAngle(OpenBabel::vector3 const&, OpenBabel::vector3 const&, OpenBabel::vector3 const&, OpenBabel::vector3 const&)', 'OpenBabel::OBBuilder::GetNewBondVector(OpenBabel::OBAtom*, double)', 'OpenBabel::OBConversion::OBConversion(std::__1::basic_istream >*, std::__1::basic_ostream >*)']

This section shows analysis of runtime coverage data.

For futher technical details on how this section is generated, please see the Glossary .

Complex functions with low coverage

Func name	Function total lines	Lines covered at runtime	percentage covered	Reached by fuzzers
OpenBabel::OBChainsParser::IdentifyElement(char*)	275	13	4.727%	['fuzz_empty_write', 'fuzz_smart', 'fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_convert', 'fuzz_molecule']
OpenBabel::OBMol::NewAtom(unsignedlong)	48	26	54.16%	['fuzz_obconversion_smiles', 'fuzz_molecule', 'fuzz_smart', 'fuzz_obconversion_sdf']
OpenBabel::AliasData::FromNameLookup(OpenBabel::OBMol&,unsignedint)	77	6	7.792%	['fuzz_molecule', 'fuzz_obconversion_sdf']
OpenBabel::OBSmartsMatcher::match(OpenBabel::OBMol&,OpenBabel::Patternconst*,std::__1::vector >,std::__1::allocator >>>&,bool)	80	40	50.0%	['fuzz_smart', 'fuzz_molecule', 'fuzz_obconversion_sdf']
OpenBabel::OBAtomTyper::ParseLine(charconst*)	42	20	47.61%	['fuzz_smart', 'fuzz_molecule', 'fuzz_obconversion_sdf']
OpenBabel::DlpolyConfigFormat::ReadMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	32	10	31.25%	['fuzz_convert']
OpenBabel::EXYZFormat::ReadMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	258	18	6.976%	['fuzz_convert']
OpenBabel::MPQCFormat::ReadMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	63	22	34.92%	['fuzz_convert']
OpenBabel::OBMoleculeFormat::ReadChemObjectImpl(OpenBabel::OBConversion*,OpenBabel::OBFormat*)	72	15	20.83%	['fuzz_convert']
OpenBabel::OBColor::OBColor(std::__1::basic_string ,std::__1::allocator >const&)	36	7	19.44%	['fuzz_empty_write']
OpenBabel::OBDepict::DrawMolecule(OpenBabel::OBMol*)	250	29	11.60%	['fuzz_empty_write']
OpenBabel::MCDLFormat::constring(int(*)[4],char*)	43	9	20.93%	['fuzz_empty_write']
OpenBabel::MCDLFormat::solve(int,int(*)[4],int)	212	50	23.58%	['fuzz_empty_write']
OpenBabel::MCDLFormat::getMCDL(OpenBabel::OBMol*,bool)	351	105	29.91%	['fuzz_empty_write']
OpenBabel::MNAFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	52	18	34.61%	['fuzz_empty_write']
OpenBabel::AlchemyFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	60	20	33.33%	['fuzz_empty_write']
OpenBabel::BallStickFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	38	19	50.0%	['fuzz_empty_write']
OpenBabel::BGFFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	82	26	31.70%	['fuzz_empty_write']
OpenBabel::CacaoFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	34	17	50.0%	['fuzz_empty_write']
OpenBabel::CacaoInternalFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	45	11	24.44%	['fuzz_empty_write']
OpenBabel::CHEM3D1Format::WriteChem3d(std::__1::basic_ostream >&,OpenBabel::OBMol&,charconst*)	48	16	33.33%	['fuzz_empty_write']
OpenBabel::ChemDrawFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	31	16	51.61%	['fuzz_empty_write']
OpenBabel::CHTFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	65	26	40.0%	['fuzz_empty_write']
OpenBabel::CIFFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	162	24	14.81%	['fuzz_empty_write']
OpenBabel::CRK2DFormat::WriteCRK(std::__1::basic_ostream >&,OpenBabel::OBMol&,bool)	45	9	20.0%	['fuzz_empty_write']
OpenBabel::CSSRFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	69	27	39.13%	['fuzz_empty_write']
OpenBabel::DMolFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	42	14	33.33%	['fuzz_empty_write']
OpenBabel::EXYZFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	52	26	50.0%	['fuzz_empty_write']
OpenBabel::FenskeZmatFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	54	17	31.48%	['fuzz_empty_write']
OpenBabel::FHIaimsFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	34	14	41.17%	['fuzz_empty_write']
OpenBabel::FreeFormFractionalFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	36	15	41.66%	['fuzz_empty_write']
OpenBabel::GAMESSInputFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	134	35	26.11%	['fuzz_empty_write']
OpenBabel::OBGaussianCubeFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	90	21	23.33%	['fuzz_empty_write']
OpenBabel::GaussianInputFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	120	31	25.83%	['fuzz_empty_write']
OpenBabel::GaussianZMatrixInputFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	135	37	27.40%	['fuzz_empty_write']
OpenBabel::GhemicalFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	80	22	27.50%	['fuzz_empty_write']
OpenBabel::GROFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	74	21	28.37%	['fuzz_empty_write']
OpenBabel::GROMOS96Format::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	47	21	44.68%	['fuzz_empty_write']
OpenBabel::HINFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	56	17	30.35%	['fuzz_empty_write']
OpenBabel::LMPDATFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	399	115	28.82%	['fuzz_empty_write']
OpenBabel::MDLFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	288	88	30.55%	['fuzz_empty_write']
OpenBabel::mmCIFFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	164	59	35.97%	['fuzz_empty_write']
OpenBabel::MacroModFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	52	19	36.53%	['fuzz_empty_write']
OpenBabel::MOL2Format::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	122	55	45.08%	['fuzz_empty_write']
OpenBabel::OBMoldenFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	62	14	22.58%	['fuzz_empty_write']
OpenBabel::MolReportFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	45	17	37.77%	['fuzz_empty_write']
OpenBabel::MOPACCARTFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	54	25	46.29%	['fuzz_empty_write']
OpenBabel::MOPACINTFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	60	24	40.0%	['fuzz_empty_write']
OpenBabel::MPDFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	85	35	41.17%	['fuzz_empty_write']
OpenBabel::OBOpenDXCubeFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	71	15	21.12%	['fuzz_empty_write']
OpenBabel::PCModelFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	39	20	51.28%	['fuzz_empty_write']
OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	262	92	35.11%	['fuzz_empty_write']
OpenBabel::PDBQTFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	221	20	9.049%	['fuzz_empty_write']
OpenBabel::PointCloudFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	97	34	35.05%	['fuzz_empty_write']
OpenBabel::PovrayFormat::OutputHeader(std::__1::basic_ostream >&,OpenBabel::OBMol&,std::__1::basic_string ,std::__1::allocator >)	99	52	52.52%	['fuzz_empty_write']
OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	148	44	29.72%	['fuzz_empty_write']
OpenBabel::ReportFormat::WriteDistanceMatrix(std::__1::basic_ostream >&,OpenBabel::OBMol&)	62	16	25.80%	['fuzz_empty_write']
OpenBabel::SmiReactFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	32	4	12.5%	['fuzz_empty_write']
OpenBabel::RXNFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	60	4	6.666%	['fuzz_empty_write']
OpenBabel::STLFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	58	24	41.37%	['fuzz_empty_write']
OpenBabel::ThermoFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	45	10	22.22%	['fuzz_empty_write']
OpenBabel::TinkerFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	74	24	32.43%	['fuzz_empty_write']
OpenBabel::TurbomoleFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	39	16	41.02%	['fuzz_empty_write']
OpenBabel::VASPFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	110	47	42.72%	['fuzz_empty_write']
OpenBabel::XEDFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	92	23	25.0%	['fuzz_empty_write']
OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*,OpenBabel::OBConversion*)	85	18	21.17%	['fuzz_empty_write']
OpenBabel::TSimpleMolecule::readOBMol(OpenBabel::OBMol*)	44	19	43.18%	['fuzz_empty_write']
OpenBabel::TSimpleMolecule::aromatic(int,std::__1::vector >,std::__1::vector >&)	61	14	22.95%	['fuzz_empty_write']
OpenBabel::TEditedMolecule::removeHydrogen(std::__1::vector >*,std::__1::vector >*)	47	16	34.04%	['fuzz_empty_write']
OpenBabel::TemplateRedraw::loadTemplates()	42	15	35.71%	['fuzz_empty_write']
OpenBabel::TemplateRedraw::redrawFine(OpenBabel::TSimpleMolecule&)	169	48	28.40%	['fuzz_empty_write']
OpenBabel::createStereoLists(OpenBabel::OBMol*,std::__1::vector >&,std::__1::vector >&,std::__1::vector >&)	57	18	31.57%	['fuzz_empty_write']
OpenBabel::getAtomMCDL(OpenBabel::OBMol*,int,std::__1::vector >,std::__1::vector >,std::__1::vector >,std::__1::vector >)	123	23	18.69%	['fuzz_empty_write']
OpenBabel::getBondMCDL(OpenBabel::OBMol*,int,int,std::__1::vector >,std::__1::vector >,int(*)[4],std::__1::vector >,std::__1::vector >)	201	19	9.452%	['fuzz_empty_write']
OpenBabel::OBMol::ContigFragList(std::__1::vector >,std::__1::allocator >>>&)	44	15	34.09%	['fuzz_empty_write']
OpenBabel::OBMol::GetGTDVector(std::__1::vector >&)	36	13	36.11%	['fuzz_empty_write']
OpenBabel::OBMol::ConvertZeroBonds()	80	11	13.75%	['fuzz_empty_write']
OpenBabel::CartesianToInternal(std::__1::vector >&,OpenBabel::OBMol&)	123	15	12.19%	['fuzz_empty_write']
OpenBabel::TetStereoToWedgeHash(OpenBabel::OBMol&,std::__1::map ,std::__1::allocator >>&,std::__1::map ,std::__1::allocator >>&)	134	9	6.716%	['fuzz_empty_write']
OpenBabel::OBBuilder::LoadFragments()	43	6	13.95%	['fuzz_molecule']
OpenBabel::OBFFConstraints::GetConstraintEnergy()	61	6	9.836%	['fuzz_molecule']
OpenBabel::OBForceFieldGaff::ParseParamFile()	113	10	8.849%	['fuzz_molecule']
OpenBabel::OBForceFieldGaff::SetTypes()	168	16	9.523%	['fuzz_molecule']
OpenBabel::OBForceFieldGhemical::ParseParamFile()	87	10	11.49%	['fuzz_molecule']
OpenBabel::OBForceFieldGhemical::SetTypes()	54	12	22.22%	['fuzz_molecule']
OpenBabel::OBForceFieldMMFF94::ParseParamFile()	44	10	22.72%	['fuzz_molecule']
OpenBabel::OBForceFieldMMFF94::SetupCalculations()	660	71	10.75%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_Bond ()	32	7	21.87%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_Bond ()	32	7	21.87%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_Angle ()	34	7	20.58%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_Angle ()	34	7	20.58%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_StrBnd ()	34	7	20.58%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_StrBnd ()	34	7	20.58%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_Torsion ()	34	7	20.58%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_Torsion ()	34	7	20.58%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_OOP ()	34	7	20.58%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_OOP ()	34	7	20.58%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_VDW ()	33	7	21.21%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_VDW ()	33	7	21.21%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_Electrostatic ()	34	7	20.58%	['fuzz_molecule']
doubleOpenBabel::OBForceFieldMMFF94::E_Electrostatic ()	34	7	20.58%	['fuzz_molecule']
OpenBabel::OBForceFieldUFF::ParseParamFile()	65	9	13.84%	['fuzz_molecule']
OpenBabel::OBForceFieldUFF::SetTypes()	67	12	17.91%	['fuzz_molecule']
OpenBabel::OBMol2Cansmi::CreateFragCansmiString(OpenBabel::OBMol&,OpenBabel::OBBitVec&,std::__1::basic_string ,std::__1::allocator >&)	154	81	52.59%	['fuzz_molecule']
OpenBabel::CreateCansmiString(OpenBabel::OBMol&,std::__1::basic_string ,std::__1::allocator >&,OpenBabel::OBBitVec&,OpenBabel::OBConversion*)	46	24	52.17%	['fuzz_molecule']
OpenBabel::GetExprOrder(OpenBabel::_BondExpr*)	32	9	28.12%	['fuzz_molecule']
OpenBabel::OBCisTransStereo::Config::operator==(OpenBabel::OBCisTransStereo::Configconst&)const	31	11	35.48%	['fuzz_molecule']

This section shows which files and directories are considered in this report. The main reason for showing this is fuzz introspector may include more code in the reasoning than is desired. This section helps identify if too many files/directories are included, e.g. third party code, which may be irrelevant for the threat model. In the event too much is included, fuzz introspector supports a configuration file that can exclude data from the report. See the following link for more information on how to create a config file: link

Files in report

Source file	Reached by	Covered by
	[]	[]
/src/openbabel/src/ops/gen2D.cpp	[]	[]
/src/openbabel/src/formats/PQSformat.cpp	[]	[]
/src/openbabel/src/stereo/stereo.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/include/openbabel/query.h	[]	[]
/src/openbabel/include/openbabel/grid.h	[]	[]
/src/openbabel/test/fuzz/fuzz_smart.cpp	['fuzz_smart']	['fuzz_smart']
/src/openbabel/src/formats/abinitformat.cpp	[]	[]
/src/openbabel/src/formats/aoforceformat.cpp	[]	[]
/src/openbabel/src/forcefields/forcefieldgaff.cpp	[]	[]
/src/openbabel/src/formats/dmolformat.cpp	[]	[]
/src/openbabel/src/fingerprint.cpp	[]	[]
/src/openbabel/src/formats/nwchemformat.cpp	[]	[]
/src/openbabel/src/builder.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/macrocycle.cpp	['fuzz_molecule']	['fuzz_molecule']
/src/openbabel/include/openbabel/obutil.h	['fuzz_molecule']	['fuzz_molecule']
/src/openbabel/include/openbabel/ring.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/rsmiformat.cpp	[]	[]
/src/openbabel/src/formats/xedformat.cpp	[]	[]
/src/openbabel/src/formats/rxnformat.cpp	[]	[]
/src/openbabel/src/formats/vaspformat.cpp	[]	[]
/src/openbabel/src/forcefields/forcefielduff.h	[]	[]
/src/openbabel/include/openbabel/forcefield.h	['fuzz_molecule']	['fuzz_molecule']
/src/openbabel/src/mol.cpp	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/include/openbabel/plugin.h	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/include/openbabel/phmodel.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/include/openbabel/math/spacegroup.h	[]	[]
/src/openbabel/include/openbabel/typer.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/nulformat.cpp	[]	[]
/src/openbabel/src/griddata.cpp	[]	[]
/src/openbabel/test/fuzz/fuzz_molecule.cpp	['fuzz_molecule']	['fuzz_molecule']
/src/openbabel/include/openbabel/fingerprint.h	[]	[]
/src/openbabel/src/formats/mpdformat.cpp	[]	[]
/src/openbabel/src/formats/pdbqtformat.cpp	[]	[]
/src/openbabel/src/formats/MNAformat.cpp	[]	[]
/src/openbabel/src/parsmart.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/include/openbabel/data.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/bondtyper.cpp	['fuzz_molecule']	['fuzz_molecule']
/src/openbabel/src/formats/APIInterface.cpp	[]	[]
/src/openbabel/src/formats/shelxformat.cpp	[]	[]
/src/openbabel/src/forcefields/forcefieldgaff.h	[]	[]
/src/openbabel/src/stereo/tetranonplanar.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/ops/canonical.cpp	[]	[]
/src/openbabel/src/descriptors/inchidescriptor.cpp	[]	[]
/src/openbabel/src/formats/pwscfformat.cpp	[]	[]
/src/openbabel/src/fingerprints/finger2.cpp	[]	[]
/src/openbabel/src/ops/partialcharges.cpp	[]	[]
/src/openbabel/src/formats/msmsformat.cpp	[]	[]
/src/openbabel/src/tokenst.cpp	['fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/include/openbabel/residue.h	[]	[]
/src/openbabel/src/molchrg.cpp	['fuzz_molecule']	['fuzz_molecule']
/src/openbabel/src/formats/povrayformat.cpp	[]	[]
/src/openbabel/src/obutil.cpp	['fuzz_molecule']	['fuzz_molecule']
/src/openbabel/include/openbabel/rotamer.h	[]	[]
/src/openbabel/include/openbabel/tokenst.h	[]	[]
/src/openbabel/src/elements.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/depict/depict.cpp	[]	[]
/src/openbabel/src/chains.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/include/openbabel/text.h	[]	[]
/src/openbabel/src/depict/svgpainter.cpp	[]	[]
/src/openbabel/src/formats/gromos96format.cpp	[]	[]
/src/openbabel/src/forcefield.cpp	['fuzz_molecule']	['fuzz_molecule']
/src/openbabel/src/formats/gausscubeformat.cpp	[]	[]
/src/openbabel/src/formats/titleformat.cpp	[]	[]
/src/openbabel/src/obfunctions.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/boxformat.cpp	[]	[]
/src/openbabel/include/openbabel/stereo/tetrahedral.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/ghemicalformat.cpp	[]	[]
/src/openbabel/src/formats/amberformat.cpp	[]	[]
/src/openbabel/src/rotor.cpp	[]	[]
/src/openbabel/src/formats/adfformat.cpp	[]	[]
/src/openbabel/src/formats/smilesvalence.h	[]	[]
/src/openbabel/include/openbabel/stereo/tetranonplanar.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/include/openbabel/math/transform3d.h	[]	[]
/src/openbabel/src/alias.cpp	[]	[]
/src/openbabel/src/plugin.cpp	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/src/formats/molproformat.cpp	[]	[]
/src/openbabel/src/formats/gaussformat.cpp	[]	[]
/src/openbabel/src/ops/addinindex.cpp	[]	[]
/usr/local/bin/../include/c++/v1/string	[]	[]
/src/openbabel/include/openbabel/obmolecformat.h	[]	[]
/src/openbabel/src/formats/acrformat.cpp	[]	[]
/src/openbabel/src/math/../rand.h	['fuzz_smart']	['fuzz_molecule']
/src/openbabel/src/formats/fhiaimsformat.cpp	[]	[]
/src/openbabel/src/formats/mmcifformat.cpp	[]	[]
/src/openbabel/src/canon.cpp	[]	[]
/src/openbabel/src/formats/copyformat.cpp	[]	[]
/src/openbabel/src/stereo/tetraplanar.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/mcdlutil.cpp	[]	[]
/src/openbabel/src/formats/mdlformat.cpp	[]	[]
/src/openbabel/include/openbabel/rotor.h	[]	[]
/src/openbabel/src/formats/chem3dformat.cpp	[]	[]
/src/openbabel/src/formats/xyzformat.cpp	[]	[]
/src/openbabel/src/format.cpp	[]	[]
/src/openbabel/src/formats/dlpolyformat.cpp	[]	[]
/src/openbabel/src/formats/MCDLformat.cpp	[]	[]
/src/openbabel/src/formats/freefracformat.cpp	[]	[]
/src/openbabel/src/math/vector3.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/genbankformat.cpp	[]	[]
/src/openbabel/src/ops/addpolarh.cpp	[]	[]
/src/openbabel/src/math/matrix3x3.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/atom.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/include/openbabel/generic.h	['fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/include/openbabel/math/matrix3x3.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_molecule']
/src/openbabel/src/formats/pcmodelformat.cpp	[]	[]
/src/openbabel/src/forcefields/forcefieldghemical.h	[]	[]
/src/openbabel/src/math/spacegroup.cpp	[]	[]
/src/openbabel/include/openbabel/descriptor.h	[]	[]
/src/openbabel/src/ops/../stereo/gen3dstereohelper.h	[]	[]
/src/openbabel/src/kekulize.cpp	['fuzz_molecule']	['fuzz_molecule']
/src/openbabel/include/openbabel/lineend.h	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/include/openbabel/stereo/squareplanar.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/descriptors/groupcontrib.cpp	[]	[]
/src/openbabel/src/ops/opisomorph.h	[]	[]
/src/openbabel/src/formats/mopacformat.cpp	[]	[]
/src/openbabel/src/ops/fillUC.cpp	[]	[]
/src/openbabel/src/formats/outformat.cpp	[]	[]
/src/openbabel/src/formats/featformat.cpp	[]	[]
/src/openbabel/src/formats/textformat.cpp	[]	[]
/src/openbabel/src/formats/qchemformat.cpp	[]	[]
/src/openbabel/src/ops/readconformers.cpp	[]	[]
/src/openbabel/include/openbabel/chargemodel.h	[]	[]
/src/openbabel/src/query.cpp	[]	[]
/src/openbabel/src/stereo/gen3dstereohelper.cpp	[]	[]
/src/openbabel/include/openbabel/bondtyper.h	[]	[]
/src/openbabel/src/charges/mmff94.cpp	[]	[]
/src/openbabel/include/openbabel/inchiformat.h	[]	[]
/src/openbabel/include/openbabel/math/vector3.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/castepformat.cpp	[]	[]
/src/openbabel/include/openbabel/bond.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/transform.cpp	[]	[]
/src/openbabel/test/fuzz/fuzz_obconversion.cpp	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf']
/src/openbabel/src/formats/mdlvalence.h	[]	[]
/src/openbabel/include/openbabel/bitvec.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/chemtoolformat.cpp	[]	[]
/usr/local/bin/../include/c++/v1/stdexcept	[]	[]
/src/openbabel/src/formats/groformat.cpp	[]	[]
/src/openbabel/src/grid.cpp	[]	[]
/src/openbabel/src/zipstreamimpl.h	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_molecule']
/src/openbabel/src/formats/pngformat.cpp	[]	[]
/src/openbabel/src/formats/balstformat.cpp	[]	[]
/src/openbabel/src/descriptor.cpp	[]	[]
/src/openbabel/src/formats/molreport.cpp	[]	[]
/src/openbabel/src/formats/lmpdatformat.cpp	[]	[]
/src/openbabel/src/formats/pointcloudformat.cpp	[]	[]
/src/openbabel/src/forcefields/forcefielduff.cpp	[]	[]
/src/openbabel/src/locale.cpp	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']
/usr/local/bin/../include/c++/v1/__algorithm/simd_utils.h	[]	[]
/usr/local/bin/../include/c++/v1/istream	[]	[]
/src/openbabel/src/ops/delpolarh.cpp	[]	[]
/src/openbabel/src/forcefields/forcefieldmmff94.h	[]	[]
/src/openbabel/src/formats/alchemyformat.cpp	[]	[]
/src/openbabel/include/openbabel/alias.h	[]	[]
/src/openbabel/include/openbabel/internalcoord.h	[]	[]
/src/openbabel/src/formats/tinkerformat.cpp	[]	[]
/src/openbabel/src/formats/acesformat.cpp	[]	[]
/src/openbabel/src/residue.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/charges/gasteiger.cpp	[]	[]
/src/openbabel/src/charges/fromfile.cpp	[]	[]
/src/openbabel/src/stereo/perception.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/ops/gen3d.cpp	[]	[]
/src/openbabel/src/formats/smilesformat.cpp	[]	[]
/src/openbabel/src/descriptors/cansmidescriptor.cpp	[]	[]
/src/openbabel/include/openbabel/builder.h	['fuzz_molecule']	['fuzz_molecule']
/src/openbabel/src/formats/opendxformat.cpp	[]	[]
/src/openbabel/src/obconversion.cpp	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/src/stereo/squareplanar.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/chemdrawct.cpp	[]	[]
/src/openbabel/src/formats/chemdrawcdx.cpp	[]	[]
/src/openbabel/src/formats/bgfformat.cpp	[]	[]
/src/openbabel/include/openbabel/reaction.h	[]	[]
/src/openbabel/src/reactionfacade.cpp	[]	[]
/src/openbabel/src/formats/mpqcformat.cpp	[]	[]
/src/openbabel/src/descriptors/cmpdfilter.cpp	[]	[]
/src/openbabel/test/fuzz/fuzz_convert.cpp	['fuzz_convert']	['fuzz_convert']
/src/openbabel/src/fingerprints/fingerecfp.cpp	[]	[]
/src/openbabel/src/ring.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/include/openbabel/op.h	[]	[]
/src/openbabel/src/formats/svgformat.cpp	[]	[]
/src/openbabel/include/openbabel/parsmart.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/unichemformat.cpp	[]	[]
/src/openbabel/src/forcefields/forcefieldghemical.cpp	[]	[]
/src/openbabel/src/math/transform3d.cpp	[]	[]
/src/openbabel/src/rand.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_molecule']
/src/openbabel/src/formats/mol2format.cpp	[]	[]
/src/openbabel/include/openbabel/obconversion.h	['fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/src/formats/cssrformat.cpp	[]	[]
/src/openbabel/src/fingerprints/finger3.cpp	[]	[]
/src/openbabel/src/ops/addnonpolarh.cpp	[]	[]
/src/openbabel/include/openbabel/kinetics.h	[]	[]
/src/openbabel/src/isomorphism.cpp	[]	[]
/src/openbabel/src/formats/reportformat.cpp	[]	[]
/src/openbabel/src/formats/jaguarformat.cpp	[]	[]
/src/openbabel/src/forcefields/forcefieldmmff94.cpp	[]	[]
/src/openbabel/include/openbabel/mol.h	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/include/openbabel/stereo/tetraplanar.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/data.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/generic.cpp	['fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/src/formats/chemkinformat.cpp	[]	[]
/src/openbabel/src/stereo/cistrans.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/gulpformat.cpp	[]	[]
/src/openbabel/src/formats/fchkformat.cpp	[]	[]
/src/openbabel/src/formats/yasaraformat.cpp	[]	[]
/src/openbabel/src/descriptors/filters.cpp	[]	[]
/src/openbabel/src/stereo/facade.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/include/openbabel/groupcontrib.h	[]	[]
/src/openbabel/src/formats/cccformat.cpp	[]	[]
/src/openbabel/src/formats/crkformat.cpp	[]	[]
/src/openbabel/include/openbabel/stereo/cistrans.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/thermoformat.cpp	[]	[]
/src/openbabel/src/phmodel.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/bitvec.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/test/fuzz/fuzz_empty_write.cpp	['fuzz_empty_write']	['fuzz_empty_write']
/src/openbabel/src/formats/zindoformat.cpp	[]	[]
/src/openbabel/include/openbabel/depict/painter.h	[]	[]
/src/openbabel/src/obiter.cpp	['fuzz_molecule']	['fuzz_molecule']
/src/openbabel/src/formats/gausszmatformat.cpp	[]	[]
/src/openbabel/src/ops/delnonpolarh.cpp	[]	[]
/src/openbabel/src/ops/forcefield.cpp	[]	[]
/src/openbabel/src/formats/carformat.cpp	[]	[]
/src/openbabel/include/openbabel/atom.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/include/openbabel/molchrg.h	['fuzz_molecule']	['fuzz_molecule']
/src/openbabel/src/formats/xsfformat.cpp	[]	[]
/src/openbabel/src/ops/xout.cpp	[]	[]
/src/openbabel/src/formats/stlformat.cpp	[]	[]
/src/openbabel/src/formats/hinformat.cpp	[]	[]
/src/openbabel/src/bond.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/cacaoformat.cpp	[]	[]
/src/openbabel/src/formats/cacheformat.cpp	[]	[]
/src/openbabel/src/rotamer.cpp	[]	[]
/src/openbabel/src/stereo/tetrahedral.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/turbomoleformat.cpp	[]	[]
/src/openbabel/src/formats/msiformat.cpp	[]	[]
/src/openbabel/src/obmolecformat.cpp	[]	[]
/src/openbabel/include/openbabel/isomorphism.h	[]	[]
/src/openbabel/src/ops/deferred.h	[]	[]
/src/openbabel/src/formats/pdbformat.cpp	[]	[]
/src/openbabel/include/openbabel/stereo/stereo.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/gamessformat.cpp	[]	[]
/src/openbabel/src/formats/moldenformat.cpp	[]	[]
/src/openbabel/src/formats/exyzformat.cpp	[]	[]
/src/openbabel/src/formats/mmodformat.cpp	[]	[]
/src/openbabel/src/graphsym.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/include/openbabel/obiter.h	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/zipstream.h	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_molecule']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_molecule']
/src/openbabel/src/charges/none.cpp	[]	[]
/src/openbabel/include/openbabel/base.h	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/src/formats/fingerprintformat.cpp	[]	[]
/src/openbabel/src/base.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/fhformat.cpp	[]	[]
/src/openbabel/src/formats/fastsearchformat.cpp	[]	[]
/src/openbabel/include/openbabel/oberror.h	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/include/openbabel/format.h	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/src/formats/pqrformat.cpp	[]	[]
/src/openbabel/src/formats/fastaformat.cpp	[]	[]
/src/openbabel/src/descriptors/smartsdescriptors.cpp	[]	[]
/src/openbabel/src/ops/opisomorph.cpp	[]	[]
/src/openbabel/src/chargemodel.cpp	[]	[]
/src/openbabel/src/ops/sort.cpp	[]	[]
/src/openbabel/src/oberror.cpp	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']	['fuzz_obconversion_smiles', 'fuzz_obconversion_sdf', 'fuzz_smart', 'fuzz_convert', 'fuzz_empty_write', 'fuzz_molecule']
/src/openbabel/src/typer.cpp	['fuzz_smart', 'fuzz_molecule']	['fuzz_smart', 'fuzz_molecule']
/src/openbabel/src/formats/viewmolformat.cpp	[]	[]
/src/openbabel/src/rand.h	['fuzz_molecule']	['fuzz_molecule']
/src/openbabel/src/formats/cifformat.cpp	[]	[]
/src/openbabel/src/formats/CSRformat.cpp	[]	[]

Directories in report

Directory
/src/openbabel/src/depict/
/src/openbabel/include/openbabel/
/src/openbabel/src/formats/
/src/openbabel/src/ops/../stereo/
/src/openbabel/src/stereo/
/usr/local/bin/../include/c++/v1/
/src/openbabel/include/openbabel/depict/
/src/openbabel/src/math/
/src/openbabel/include/openbabel/stereo/
/src/openbabel/test/fuzz/
/src/openbabel/include/openbabel/math/
/src/openbabel/src/charges/
/src/openbabel/src/ops/
/src/openbabel/src/fingerprints/
/src/openbabel/src/math/../
/src/openbabel/src/descriptors/
/usr/local/bin/../include/c++/v1/__algorithm/
/src/openbabel/src/forcefields/
/src/openbabel/src/