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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">plos</journal-id>
<journal-id journal-id-type="nlm-ta">PLoS Comput Biol</journal-id>
<journal-id journal-id-type="pmc">ploscomp</journal-id><journal-title-group>
<journal-title>PLoS Computational Biology</journal-title></journal-title-group>
<issn pub-type="ppub">1553-734X</issn>
<issn pub-type="epub">1553-7358</issn>
<publisher>
<publisher-name>Public Library of Science</publisher-name>
<publisher-loc>San Francisco, USA</publisher-loc></publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">PCOMPBIOL-D-14-00956</article-id>
<article-id pub-id-type="doi">10.1371/journal.pcbi.1003960</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biology and life sciences</subject><subj-group><subject>Computational biology</subject></subj-group><subj-group><subject>Zoology</subject><subj-group><subject>Animal behavior</subject><subj-group><subject>Collective animal behavior</subject></subj-group></subj-group></subj-group></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Research and analysis methods</subject><subj-group><subject>Simulation and modeling</subject><subj-group><subject>Mathematical modeling</subject></subj-group></subj-group></subj-group></article-categories>
<title-group>
<article-title>Symmetry Restoring Bifurcation in Collective Decision-Making</article-title>
<alt-title alt-title-type="running-head">Symmetry Restoring in Collective Decision-Making</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Zabzina</surname><given-names>Natalia</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Dussutour</surname><given-names>Audrey</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Mann</surname><given-names>Richard P.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Sumpter</surname><given-names>David J. T.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Nicolis</surname><given-names>Stamatios C.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib>
</contrib-group>
<aff id="aff1"><label>1</label><addr-line>Mathematics Department, Uppsala University, Uppsala, Sweden</addr-line></aff>
<aff id="aff2"><label>2</label><addr-line>Research Center on Animal Cognition, Université Paul Sabatier, Toulouse, France</addr-line></aff>
<contrib-group>
<contrib contrib-type="editor" xlink:type="simple"><name name-style="western"><surname>Ermentrout</surname><given-names>Bard</given-names></name>
<role>Editor</role>
<xref ref-type="aff" rid="edit1"/></contrib>
</contrib-group>
<aff id="edit1"><addr-line>University of Pittsburgh, United States of America</addr-line></aff>
<author-notes>
<corresp id="cor1">* E-mail: <email xlink:type="simple">snicolis@math.uu.se</email></corresp>
<fn fn-type="conflict"><p>The authors have declared that no competing interests exist.</p></fn>
<fn fn-type="con"><p>Conceived and designed the experiments: AD NZ DJTS SCN. Performed the experiments: AD NZ. Analyzed the data: AD NZ RPM DJTS SCN. Contributed reagents/materials/analysis tools: AD NZ RPM DJTS SCN. Wrote the paper: AD NZ RPM DJTS SCN.</p></fn>
</author-notes>
<pub-date pub-type="collection"><month>12</month><year>2014</year></pub-date>
<pub-date pub-type="epub"><day>18</day><month>12</month><year>2014</year></pub-date>
<volume>10</volume>
<issue>12</issue>
<elocation-id>e1003960</elocation-id>
<history>
<date date-type="received"><day>30</day><month>5</month><year>2014</year></date>
<date date-type="accepted"><day>3</day><month>10</month><year>2014</year></date>
</history>
<permissions>
<copyright-year>2014</copyright-year>
<copyright-holder>Zabzina et al</copyright-holder><license xlink:type="simple"><license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/" xlink:type="simple">Creative Commons Attribution License</ext-link>, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p></license></permissions>
<abstract>
<p>How social groups and organisms decide between alternative feeding sites or shelters has been extensively studied both experimentally and theoretically. One key result is the existence of a symmetry-breaking bifurcation at a critical system size, where there is a switch from evenly distributed exploitation of all options to a focussed exploitation of just one. Here we present a decision-making model in which symmetry-breaking is followed by a symmetry restoring bifurcation, whereby very large systems return to an even distribution of exploitation amongst options. The model assumes local positive feedback, coupled with a negative feedback regulating the flow toward the feeding sites. We show that the model is consistent with three different strains of the slime mold <italic>Physarum polycephalum</italic>, choosing between two feeding sites. We argue that this combination of feedbacks could allow collective foraging organisms to react flexibly in a dynamic environment.</p>
</abstract>
<abstract abstract-type="summary"><title>Author Summary</title>
<p>Collective decision making is ubiquitous in group-living organisms allowing them to select between several competing resources. It is a self-organized process involving positive feedback mechanisms, whereby the preference for a particular option is reinforced if the option has already been accepted by a part of the group's constituting units. The generally accepted paradigm of collective decision-making is a transition from an exploitation mode where all options are on equal footing, to one in which groups of sufficiently large size are led to focus on a particular option, a phenomenon referred to as symmetry-breaking bifurcation. In the present work we report results based on mathematical modeling in parallel with experiments carried out on the unicellular plasmoidal organism <italic>Physarum polycephalum</italic> showing that, contrary to the classical paradigm, symmetry is eventually restored for individuals of sufficiently large size (here the plasmodium mass). This possibility, arising from the combination of positive feedbacks and a regulation of the flow by the fraction of system's mass already committed to the options, allows the organism to react flexibly. We argue that, beyond the case of <italic>P. polycephalum</italic>, this paradigm should apply to many systems possessing the aforementioned feedback and regulatory mechanisms.</p>
</abstract>
<funding-group><funding-statement>This research was supported by the European Research Council (grant IDCAB 220/104702003) and the Swedish Foundation for Strategic Research (project MDB10-0006). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript</funding-statement></funding-group><counts><page-count count="11"/></counts><custom-meta-group><custom-meta id="data-availability" xlink:type="simple"><meta-name>Data Availability</meta-name><meta-value>The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are within the paper and its Supporting Information files.</meta-value></custom-meta></custom-meta-group></article-meta>
</front>
<body><sec id="s1">
<title>Introduction</title>
<p>Many social or gregarious living organisms are effective decision-makers, in the sense that they are able to select the best of several available options <xref ref-type="bibr" rid="pcbi.1003960-Beckers1">[1]</xref>–<xref ref-type="bibr" rid="pcbi.1003960-Fitzgerald1">[9]</xref>. Extensive experimental work and mathematical modelling suggest that a basic feature underlying this phenomenon is a symmetry-breaking bifurcation. That is, there is a transition from a “homogeneous” exploitation of the resources (all options are equally exploited) to an “inhomogeneous” mode where a focus on a particular option is occurring after a certain critical value of a parameter, typically the number of individuals <xref ref-type="bibr" rid="pcbi.1003960-Deneubourg1">[3]</xref>, <xref ref-type="bibr" rid="pcbi.1003960-Detrain1">[10]</xref>–<xref ref-type="bibr" rid="pcbi.1003960-Nicolis1">[13]</xref>. A key factor in the emergence of such patterns of exploitation is the amplification of an initial asymmetry arising through a fluctuation. For example in social insects, an individual discovering a food source will produce a signal that will be followed and reinforced by recruited individuals <xref ref-type="bibr" rid="pcbi.1003960-Pasteels1">[14]</xref>. If the number of individuals is large enough, a slight initial imbalance of the fraction of individuals visiting one or the other source will entrain the majority of foragers to focus on a particular food source resulting in a collective decision. Such collective decision-making has been seen in predator avoidance <xref ref-type="bibr" rid="pcbi.1003960-Ward1">[15]</xref>, shelter selection <xref ref-type="bibr" rid="pcbi.1003960-Ame2">[16]</xref> and has even been interpreted in terms of rationality <xref ref-type="bibr" rid="pcbi.1003960-Latty1">[17]</xref>, <xref ref-type="bibr" rid="pcbi.1003960-Nicolis2">[18]</xref>. The idea of a symmetry-breaking depending on the number of individuals have also inspired other fields of research focusing on human behaviour <xref ref-type="bibr" rid="pcbi.1003960-Milgram1">[19]</xref>–<xref ref-type="bibr" rid="pcbi.1003960-Helbing1">[21]</xref> or economics <xref ref-type="bibr" rid="pcbi.1003960-Kirman1">[22]</xref>, <xref ref-type="bibr" rid="pcbi.1003960-Kbler1">[23]</xref>. In all these examples, symmetry is broken when a critical number of individuals is exceeded.</p>
<p>While symmetry breaking is important, we also know that symmetry can be restored when the system size (e.g. number of individuals) becomes very large. For example, direct contacts resulting from crowding in foraging ants lead to the exploitation of two routes to food, despite the fact that only one route is chosen when there is no crowding <xref ref-type="bibr" rid="pcbi.1003960-Dussutour1">[24]</xref>. More intricate situations can arise in, for example, ant species using two pheromones <xref ref-type="bibr" rid="pcbi.1003960-Dussutour2">[25]</xref> or in social caterpillars <italic>Malacosoma disstria</italic> displaying behavioural polymorphism <xref ref-type="bibr" rid="pcbi.1003960-Dussutour3">[26]</xref>, <xref ref-type="bibr" rid="pcbi.1003960-Nicolis3">[27]</xref>. Here exploitation patterns are shown to arise in which past a first symmetry-breaking transition there is coexistence of inhomogeneous and homogeneous modes the latter becoming even the rule under certain conditions. The interplay between symmetry breaking and symmetry restoring is also a basic issue in statistical and condensed matter physics <xref ref-type="bibr" rid="pcbi.1003960-Boccara1">[28]</xref>, <xref ref-type="bibr" rid="pcbi.1003960-Shigenari1">[29]</xref> and in high energy physics <xref ref-type="bibr" rid="pcbi.1003960-Bugaev1">[30]</xref> when more than two phases of matter can coexist.</p>
<p>In this paper, we analyse decision-making at the cellular level, on the paradigmatic case of the true slime mold <italic>Physarum polycephalum</italic>. We show that non-trivial decision patterns, including a symmetry restoring bifurcation may arise depending on the mass of the slime mold.</p>
<p><italic>P. polycephalum</italic> is a unicellular, multinucleate protist. Its vegetative phase is a multi-nucleate plasmodium. It is during this stage that the organism searches for food. Depending on the strains of the organism considered, the plasmodium sets out pseudopodia in all directions for a certain distance and then builds one or few extended search fronts (<xref ref-type="fig" rid="pcbi-1003960-g001">Fig. 1</xref>) during exploration. The plasmodium is able to sense various stimuli from a distance and move toward them via chemotaxis <xref ref-type="bibr" rid="pcbi.1003960-Halvorsrud1">[31]</xref>. When the plasmodium comes into contact with a food source, it completely surrounds it and resumes exploration while remaining in physical contact with the initial food source. The plasmodium can grow to cover large area (up to 900 cm<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e001" xlink:type="simple"/></inline-formula>), and is capable of moving at relative high speed (up to 5 cm/hr) <xref ref-type="bibr" rid="pcbi.1003960-Kessler1">[32]</xref> and of building efficient transportation networks <xref ref-type="bibr" rid="pcbi.1003960-Ma1">[33]</xref>. In most of these studies reported in the literature, a single strain was used to reveal the decision-making patterns of <italic>P. polycephalum</italic>. In this paper we develop a model based on <xref ref-type="bibr" rid="pcbi.1003960-Sumpter2">[34]</xref> and <xref ref-type="bibr" rid="pcbi.1003960-Sumpter3">[35]</xref>, along with experiments carried out on three strains of the true slime mould <italic>P. polycephalum</italic> to test our predictions and reveal the differences between these three strains in decision-making outcome.</p>
<fig id="pcbi-1003960-g001" position="float"><object-id pub-id-type="doi">10.1371/journal.pcbi.1003960.g001</object-id><label>Figure 1</label><caption>
<title>Exploration patterns of the three different strains tested.</title>
<p>(a) Australian, (b) American and (c) Japanese.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pcbi.1003960.g001" position="float" xlink:type="simple"/></fig>
<p>The model describes how commitment to two identical options evolves in time. We let <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e002" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e003" xlink:type="simple"/></inline-formula> be the number of units within the system committed to options 1 and 2, respectively. We further assume a pool of uncommitted units of size <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e004" xlink:type="simple"/></inline-formula> where <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e005" xlink:type="simple"/></inline-formula> is the system size. We express the build up of commitment to the options with respect to time as <disp-formula id="pcbi.1003960.e007"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e007" xlink:type="simple"/><label>(1)</label></disp-formula></p>
<p>Here <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e008" xlink:type="simple"/></inline-formula> is the rate per individual unit time to choose between one of the options, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e009" xlink:type="simple"/></inline-formula> accounts for the feedbacks present in the decision-making and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e010" xlink:type="simple"/></inline-formula> is the rate at which commitment decays.</p>
<p>A number of authors <xref ref-type="bibr" rid="pcbi.1003960-Beckers1">[1]</xref>, <xref ref-type="bibr" rid="pcbi.1003960-Nicolis1">[13]</xref>, <xref ref-type="bibr" rid="pcbi.1003960-Dussutour1">[24]</xref> have analysed a similar model – particularly in the context of foraging in ants – under the hypothesis that rate of decision-making is constant, i.e. <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e011" xlink:type="simple"/></inline-formula> is replaced by a constant <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e012" xlink:type="simple"/></inline-formula>. This hypothesis is reasonable in the limit where the initial system size is large and the number of units committed to the options remains small. However, in many natural systems the initial mass is significantly depleted as time goes on. This is certainly the case in our current experiment on foraging by <italic>P. polycephalum</italic> where a substantial part of the initial mass ends up covering one or both the food sources. The system we study here can thus be viewed as having a “passive” negative feedback of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e013" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e014" xlink:type="simple"/></inline-formula>, whereby depletion of units reduces the rate of recruitment.</p>
<p>We turn next to the positive feedback functions <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e015" xlink:type="simple"/></inline-formula>. Several possible forms have been proposed for these (see <xref ref-type="bibr" rid="pcbi.1003960-Sumpter3">[35]</xref> and <xref ref-type="bibr" rid="pcbi.1003960-Arganda1">[36]</xref> for recent reviews). One of the dominant ideas has been that an individual bases its decision on previous decisions made by others, i.e., on the numbers of units having already committed the different options. For example, <xref ref-type="bibr" rid="pcbi.1003960-Nicolis1">[13]</xref> use <disp-formula id="pcbi.1003960.e016"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e016" xlink:type="simple"/><label>(2a)</label></disp-formula>while, <xref ref-type="bibr" rid="pcbi.1003960-PrezEscudero1">[37]</xref> argue, on the basis of Bayesian estimation, that the form <disp-formula id="pcbi.1003960.e017"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e017" xlink:type="simple"/><label>(2b)</label></disp-formula>gives a form of optimal decision-making, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e018" xlink:type="simple"/></inline-formula> being a sensitivity parameter.</p>
<p>Both the above forms assume that information about commitment to both of the options is available to the decision-making units. An alternative view is the quorum model <xref ref-type="bibr" rid="pcbi.1003960-Sumpter2">[34]</xref>. Here one assumes that the probability of accepting an option is simply an increasing function of the number of units that have already accepted this particular option independent of the number of units choosing the other option. In this paper we model this phenomenon using <disp-formula id="pcbi.1003960.e019"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e019" xlink:type="simple"/><label>(2c)</label></disp-formula></p>
<p>This form follows <xref ref-type="bibr" rid="pcbi.1003960-Sumpter2">[34]</xref>, albeit without an additional spontaneous probability of adopting an option. A similar form has also been derived by <xref ref-type="bibr" rid="pcbi.1003960-Arganda1">[36]</xref> within a Bayesian framework. They found that <disp-formula id="pcbi.1003960.e020"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e020" xlink:type="simple"/><label>(2d)</label></disp-formula>provided a good match to decisions made by zebrafish. As it turns out the use of either (2c) or (2d) is not essential in what follows. Both these functions have the same sigmoidal form, which produces the sequence of bifurcations we now describe.</p>
<p>In the case of <italic>P. polycephalum</italic> feedback is in the form of the growth of tubes as a result of protoplasmic flow. There is evidence that there is an upper limit of tube thickness in real organisms <xref ref-type="bibr" rid="pcbi.1003960-Tero1">[38]</xref>. The parameter <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e021" xlink:type="simple"/></inline-formula> then stands for the threshold beyond which this feedback becomes effective or, alternatively the threshold flow for tube construction. Nakagaki et al. <xref ref-type="bibr" rid="pcbi.1003960-Nakagaki1">[39]</xref> consider the sigmoidal function of the form <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e022" xlink:type="simple"/></inline-formula> to account for these effects but, again, the results reported below are not affected qualitatively by the choice of exponents greater than 2.</p>
<p>Summarising, model (1) for two equal food sources can be written as<disp-formula id="pcbi.1003960.e023"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e023" xlink:type="simple"/></disp-formula><disp-formula id="pcbi.1003960.e024"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e024" xlink:type="simple"/><label>(3)</label></disp-formula></p>
<p>It captures two essential properties of a class of decision-making systems of which <italic>Physarum polycephalum</italic> constitutes a prototypical example. First, decisions are local in the sense that each of the two positive feedback functions <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e025" xlink:type="simple"/></inline-formula> depends only on the fraction of system's mass attracted to the particular option <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e026" xlink:type="simple"/></inline-formula>. In particular, in <italic>P. polycephalum</italic> tubes are being built to food sources on the basis of only local information. Second, for any given value of initial mass <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e027" xlink:type="simple"/></inline-formula> the portion of the system not yet committed to the options is decreasing as <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e028" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e029" xlink:type="simple"/></inline-formula> are increasing.</p>
<p>In order to investigate the role of randomness in the model and to fit it to data, we also implemented a Monte Carlo version of this model. See <xref ref-type="sec" rid="s4">Materials and Methods</xref> for details.</p>
</sec><sec id="s2">
<title>Results</title>
    <p><xref ref-type="fig" rid="pcbi-1003960-g002">Fig. 2</xref> shows the bifurcation diagram of the steady-state solutions of eqs. (3), i.e., how the steady-sate level of commitment to an option changes for initial system sizes. Three bifurcation points can be identified. Before the first bifurcation there is one stable steady state corresponding to no decision (trivial steady state). After the first bifurcation point (see <xref ref-type="sec" rid="s4">Material and Methods</xref>, <xref ref-type="disp-formula" rid="pcbi.1003960.e118">eq. (6)</xref>) the system has three stable states, one corresponding to no decision and the other two corresponding to the exclusive exploitation of one or the other of the two options (semi-trivial steady state). In terms of the behavior of <italic>Physarum polycephalum</italic>, the trivial steady state describes a situation where the plasmodium did not find food or never moved from the starting point. The semi-trivial steady state describes the situation where the plasmodium exploits just one option.</p>
<fig id="pcbi-1003960-g002" position="float"><object-id pub-id-type="doi">10.1371/journal.pcbi.1003960.g002</object-id><label>Figure 2</label><caption>
<title>Bifurcation diagram corresponding to the steady state solutions of <xref ref-type="disp-formula" rid="pcbi.1003960.e024"><bold>equation (3</bold></xref>) with respect to the parameter <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e030" xlink:type="simple"/></inline-formula>.</title>
<p>Full and dashed lines correspond to stable and unstable solutions respectively. The black circle shows the first bifurcation, the white circle corresponds to the second bifurcation and the black square labels the third bifurcation. Parameter values are <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e031" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e032" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e033" xlink:type="simple"/></inline-formula>.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pcbi.1003960.g002" position="float" xlink:type="simple"/></fig>
<p>For larger initial mass values a second bifurcation occurs and unstable homogeneous solutions appear. In terms of the decision-making of <italic>Physarum polycephalum</italic> the instability of these symmetric solutions means that the plasmodium does not have enough mass to exploit two options at the same time and thus moves to just one. After a critical value <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e034" xlink:type="simple"/></inline-formula> (see <xref ref-type="sec" rid="s4">Materials and Methods</xref>, <xref ref-type="disp-formula" rid="pcbi.1003960.e142">eq. (10)</xref>), corresponding to a third bifurcation, the upper branch of the homogeneous solutions becomes stable. This corresponds to the plasmodium equally exploiting both food sources. We label the bifurcation at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e035" xlink:type="simple"/></inline-formula> a symmetry restoring bifurcation, since a stable, nontrivial symmetric solution appears at this point.</p>
    <p>This stabilisation coincides with the appearance of two non-homogeneous (asymmetric) unstable solutions, characteristic of a subcritical pitchfork bifurcation. Here we have tristability such that, depending on initial conditions, the plasmodium will exploit either none of the options, one of the two or both. The asymptotic analysis of these solutions for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e036" xlink:type="simple"/></inline-formula> shows that the distance between the inhomogeneous solutions and the stable upper branch of the semi-trivial steady state decreases as <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e037" xlink:type="simple"/></inline-formula> increases. This means that for large mass these two solutions are approximately equal. As a result, the stable upper branch of the semi-trivial solution(see <xref ref-type="sec" rid="s4">Material and Methods</xref>, <xref ref-type="disp-formula" rid="pcbi.1003960.e117">eq. (5)</xref>) can never be reached in the sense that the set of initial conditions in its attraction basin decreases in size with <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e038" xlink:type="simple"/></inline-formula>. The biological conclusion is that a plasmodium of very large mass nearly always spreads between two options rather than moving to one.</p>
    <p>We now study the role of the threshold and flux parameters <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e039" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e040" xlink:type="simple"/></inline-formula>. <xref ref-type="fig" rid="pcbi-1003960-g003">Fig. 3</xref> depicts critical values of parameter <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e041" xlink:type="simple"/></inline-formula> as function of parameter <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e042" xlink:type="simple"/></inline-formula> for the fixed mass <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e043" xlink:type="simple"/></inline-formula>. The three lines correspond to the three types of bifurcations identified above. The bold solid line corresponds to the condition of the first bifurcation to occur and thus, to the existence of semi trivial solutions (see <xref ref-type="disp-formula" rid="pcbi.1003960.e118">eq.(6)</xref> in <xref ref-type="sec" rid="s4">Materials and Methods</xref>). The solid line corresponds to the condition of the second bifurcation to occur and to existence of a non-trivial unstable homogeneous solution (see <xref ref-type="disp-formula" rid="pcbi.1003960.e129">eq. (8)</xref> in Material and Methods) Finally, if parameters <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e044" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e045" xlink:type="simple"/></inline-formula> are chosen under the dashed line in <xref ref-type="fig" rid="pcbi-1003960-g003">Fig. 3</xref> the existence of all types solutions and all bifurcation points is secured.</p>
<fig id="pcbi-1003960-g003" position="float"><object-id pub-id-type="doi">10.1371/journal.pcbi.1003960.g003</object-id><label>Figure 3</label><caption>
<title>Conditions for existence of the bifurcation points displayed in <xref ref-type="fig" rid="pcbi-1003960-g002"><bold>Fig. 2.</bold></xref></title>
<p>Parameter <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e046" xlink:type="simple"/></inline-formula> as a function of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e047" xlink:type="simple"/></inline-formula> for fixed mass <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e048" xlink:type="simple"/></inline-formula>, other parameter as in <xref ref-type="fig" rid="pcbi-1003960-g002">Fig. 2</xref>. Bold solid, solid and dashed lines correspond to the condition for existence of the first, second and third bifurcation, respectively.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pcbi.1003960.g003" position="float" xlink:type="simple"/></fig>
<p>We next turn to the experimental results. <xref ref-type="fig" rid="pcbi-1003960-g004">Fig. 4a,b,c</xref> shows the probability to move to a food source as a function of the size of plasmodium. For very small size, there is a non-negligible probability to select none of the food sources. Plasmodia of small masses exploit more often only one source, while larger ones exploit both food sources at the same time. For example, the smallest Japanese plasmodia (<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e049" xlink:type="simple"/></inline-formula> cm) exploit only one food in 95<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e050" xlink:type="simple"/></inline-formula> of the cases while for the largest size (<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e051" xlink:type="simple"/></inline-formula> cm), this frequency decreases to 54<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e052" xlink:type="simple"/></inline-formula> (see <xref ref-type="fig" rid="pcbi-1003960-g004">Fig. 4a</xref>). Similar results are observed for the other strains (see <xref ref-type="fig" rid="pcbi-1003960-g004">Fig. 4b, c</xref>). We notice however that there are some quantitative differences of exploitation patterns between strains: The largest Australian plasmodia (<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e053" xlink:type="simple"/></inline-formula> cm) exploit two food sources in 75<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e054" xlink:type="simple"/></inline-formula> of the cases, a value which is larger than for the two other strains. Decision making by <italic>Physarum polycephalum</italic> depends thus on the size of the plasmodium as well as on the different exploration patterns of the strains.</p>
<fig id="pcbi-1003960-g004" position="float"><object-id pub-id-type="doi">10.1371/journal.pcbi.1003960.g004</object-id><label>Figure 4</label><caption>
<title>Probability to choose options with respect to the mass of plasmodium.</title>
<p>The grey colour corresponds to the probability to move to the one option, the light grey shows the probability to move to two options at the same time and the black colour corresponds to probability to exploit zero option. Experiment outcomes a) Japanese strain, b) Australia strain and c) American strain. Model outcomes d) Japanese strain <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e055" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e056" xlink:type="simple"/></inline-formula>, e) Australian strain <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e057" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e058" xlink:type="simple"/></inline-formula> and f) American strain <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e059" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e060" xlink:type="simple"/></inline-formula>, other parameter as in <xref ref-type="fig" rid="pcbi-1003960-g002">Fig. 2</xref>.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pcbi.1003960.g004" position="float" xlink:type="simple"/></fig>
<p>The experimental results are qualitatively consistent with the model predictions. Indeed, for small values of the parameter <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e061" xlink:type="simple"/></inline-formula>, there is no option chosen. For larger <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e062" xlink:type="simple"/></inline-formula>, there is coexistence between a state where one option is chosen and a state where no option is selected. Finally, for still larger <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e063" xlink:type="simple"/></inline-formula>, there is coexistence between three states corresponding to the selection of one option, to the simultaneous selection of two options and no selection at all. In terms of <italic>Physarum polycephalum</italic>, an organism with a small mass exploits one or no options, while a large mass endows it with the possibility to select simultaneously two options, one option or none.</p>
    <p>In order to compare the predictions of the model to the experimental outcome, we identified the best fit model in terms of the parameters <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e064" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e065" xlink:type="simple"/></inline-formula> for each strain. For each mass <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e066" xlink:type="simple"/></inline-formula> used in the experiment we performed a Monte Carlo simulation of the model (<xref ref-type="sec" rid="s4">Materials and Methods</xref>) for different parameter combinations. We run the Monte Carlo simulation 1000 times for each pair of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e067" xlink:type="simple"/></inline-formula> ranging with the step 0.1 from 0.5 to 3.5 and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e068" xlink:type="simple"/></inline-formula> ranging from 0.5 to 2, and identified the best fit parameters (see <xref ref-type="disp-formula" rid="pcbi.1003960.e207">eq. (12)</xref> in <xref ref-type="sec" rid="s4">Materials and Methods</xref> for details of model fitting).</p>
<p>The best-fit parameters identified for each strain of plasmodium are given in <xref ref-type="table" rid="pcbi-1003960-t001">Table 1</xref>, along with the goodness of fit parameter (see Model fitting in <xref ref-type="sec" rid="s4">Materials and Methods</xref> section). The fitting parameter <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e069" xlink:type="simple"/></inline-formula> can be roughly interpreted as the proportion of data explained by our Monte Carlo simulation model. It varies for each strain between 0.84 and 0.92, indicating that the simulation model accounts for the large majority of observed variation, supporting the validity of the inferred values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e070" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e071" xlink:type="simple"/></inline-formula>.</p>
<table-wrap id="pcbi-1003960-t001" position="float"><object-id pub-id-type="doi">10.1371/journal.pcbi.1003960.t001</object-id><label>Table 1</label><caption>
    <title>Best-fit parameters obtained from <xref ref-type="disp-formula" rid="pcbi.1003960.e207">eq. (12)</xref>.</title>
</caption><alternatives><graphic id="pcbi-1003960-t001-1" position="float" mimetype="image" xlink:href="info:doi/10.1371/journal.pcbi.1003960.t001" xlink:type="simple"/>
<table><colgroup span="1"><col align="left" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/></colgroup>
<thead>
<tr>
<td align="left" rowspan="1" colspan="1">strains</td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e072" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e073" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e074" xlink:type="simple"/></inline-formula></td>
</tr>
</thead>
<tbody>
<tr>
<td align="left" rowspan="1" colspan="1">Japan</td>
<td align="left" rowspan="1" colspan="1">2.5</td>
<td align="left" rowspan="1" colspan="1">1.5</td>
<td align="left" rowspan="1" colspan="1">0.9239</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">Australian</td>
<td align="left" rowspan="1" colspan="1">1.5</td>
<td align="left" rowspan="1" colspan="1">0.9</td>
<td align="left" rowspan="1" colspan="1">0.8448</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">American</td>
<td align="left" rowspan="1" colspan="1">1.5</td>
<td align="left" rowspan="1" colspan="1">1.2</td>
<td align="left" rowspan="1" colspan="1">0.9149</td>
</tr>
</tbody>
</table>
</alternatives></table-wrap>
<p><xref ref-type="fig" rid="pcbi-1003960-g004">Fig. 4d,e,f</xref> shows the probability of selecting an option as a function of the mass, resulting from an average of 1000 realisations for every value of the mass considered and from the best fit parameters shown in <xref ref-type="table" rid="pcbi-1003960-t001">Table 1</xref>. This is to be compared with the experimental probabilities (<xref ref-type="fig" rid="pcbi-1003960-g004">Fig. 4a,b,c</xref>). The model captures adequately the different patterns of exploitation for the masses and the strains considered in the experiment.</p>
<p><xref ref-type="fig" rid="pcbi-1003960-g005">Fig. 5</xref> shows the bifurcation diagrams corresponding to the best-fit parameters for each of the three strains. We now identify the positions of the symmetry-restoring bifurcation point beyond which a simultaneous exploitation of the two options becomes possible. We notice that the critical value of the mass <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e075" xlink:type="simple"/></inline-formula> is different for the three strains, the Japanese one occurring at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e076" xlink:type="simple"/></inline-formula> (cf. <xref ref-type="fig" rid="pcbi-1003960-g005">Fig. 5a</xref>) while the Australian and American ones occur at smaller values (<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e077" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e078" xlink:type="simple"/></inline-formula> respectively, <xref ref-type="fig" rid="pcbi-1003960-g005">Fig. 5b,c</xref>).</p>
<fig id="pcbi-1003960-g005" position="float"><object-id pub-id-type="doi">10.1371/journal.pcbi.1003960.g005</object-id><label>Figure 5</label><caption>
<title>Bifurcation diagrams corresponding to the steady state solutions of <xref ref-type="disp-formula" rid="pcbi.1003960.e024"><bold>equation (3)</bold></xref> with respect to the parameter <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e079" xlink:type="simple"/></inline-formula> corresponding to the three different strains.</title>
<p>Full and dashed lines correspond to stable and unstable solutions respectively. Parameter values are a) Japan <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e080" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e081" xlink:type="simple"/></inline-formula>, b) Australian <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e082" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e083" xlink:type="simple"/></inline-formula> and c) American <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e084" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e085" xlink:type="simple"/></inline-formula>, other parameter as in <xref ref-type="fig" rid="pcbi-1003960-g002">Fig. 2</xref>.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pcbi.1003960.g005" position="float" xlink:type="simple"/></fig>
<p>These differences can be explained in biological terms and the exploration patterns of the slime mold (<xref ref-type="fig" rid="pcbi-1003960-g001">Fig. 1</xref>). The exploratory pattern of the Japanese strain is directional, forming thick tubes during its displacement. A larger mass is then needed to be able to exploit two options. In contrast, the Australian strain explores its environment more uniformly by forming thin tubes. A smaller mass is then needed to be able to exploit two options. As for the American strain, its exploration pattern combines both Japanese and Australian ones and an intermediate value of the mass is then needed.</p>
    <p>These exploration pattern differences are taken into account by the differences between two parameters that we used in our model. <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e086" xlink:type="simple"/></inline-formula> can be viewed as the speed of displacement of the plasmodium while <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e087" xlink:type="simple"/></inline-formula> reflects a threshold beyond which a tube can be built, and therefore is related to the way the different strains are moving: a small value of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e088" xlink:type="simple"/></inline-formula> means that a tube is more easily constructed, even with a low mass. The function <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e089" xlink:type="simple"/></inline-formula> in <xref ref-type="disp-formula" rid="pcbi.1003960.e094">eq. (4a)</xref> saturates therefore more quickly and favours the homogeneous solution. On the contrary, a large value of this parameter implies that a large mass will be needed to build a tube and that <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e090" xlink:type="simple"/></inline-formula> saturates more slowly, favouring the semi-trivial inhomogeneous solution (6).</p>
</sec><sec id="s3">
<title>Discussion</title>
<p>We have presented a generic mathematical model for how different patterns of exploitation of two identical resources depend on the size of the system. The model takes into account two important features. Firstly, owing to the finite size of the system, the number of uncommitted units is limited by that already committed to the feeding sites. Secondly, the amplification process is local in that no direct comparison is made between the two options. The combination between local positive feedback and regulation of the traffic revealed a symmetry restoring bifurcation beyond which the system was able to select simultaneously two options, one of two options, or none of them. Past this bifurcation point, for increasingly larger initial system sizes, this tristability was still present but the symmetric solutions had an increasing basin of attraction. This was due to the existence of nearby unstable inhomogeneous states masking the other stable states.</p>
<p>Most of the studies investigating decision-making patterns in <italic>Physarum polycephalum</italic> were conducted using a single strain (the Australian strain obtained from Southern Biological Supplies: <xref ref-type="bibr" rid="pcbi.1003960-Latty2">[40]</xref>–<xref ref-type="bibr" rid="pcbi.1003960-Dussutour4">[42]</xref>; the Japanese strain: <xref ref-type="bibr" rid="pcbi.1003960-Nakagaki2">[43]</xref>). In order to test the model, we conducted experiments on three strains of <italic>Physarum polycephalum</italic>, each of them having different pattern of exploration. In our experimental set-up we took single individuals of different masses and let them choose between two identical food sources on a Petri dish. The different types of exploitation patterns obtained were similar to those predicted by the model, with the model capturing around 90% of the data.</p>
<p>Symmetry-restoring is a generic phenomenon resulting from the coexistence of positive and negative (regulatory) feedbacks. In addition to the case considered in this work, it is also encountered in social insect foraging <xref ref-type="bibr" rid="pcbi.1003960-Dussutour1">[24]</xref>, <xref ref-type="bibr" rid="pcbi.1003960-Dussutour2">[25]</xref>. Beyond the case of decision-making in biological organisms, symmetry restoring is known to be also present in physical sciences, including phase transitions <xref ref-type="bibr" rid="pcbi.1003960-Shigenari1">[29]</xref> and pattern formation in reaction-diffusion systems <xref ref-type="bibr" rid="pcbi.1003960-Dewel1">[44]</xref>.</p>
<p>Our study highlights an important difference between local and global information in decision making. In slime mould, flow is a function of the thickness of the tube between the organism and a specific food source <xref ref-type="bibr" rid="pcbi.1003960-Tero1">[38]</xref>, <xref ref-type="bibr" rid="pcbi.1003960-Nakagaki1">[39]</xref>. As a result, tube growth is a local process in the sense that tubes oriented along different directions are not inhibiting growth. In many experiments on ant and fish decision-making there is a predetermined decision point, at for example a Y-shaped branch <xref ref-type="bibr" rid="pcbi.1003960-Deneubourg1">[3]</xref>, <xref ref-type="bibr" rid="pcbi.1003960-Ward1">[15]</xref>, where animals compare the two options directly. This choice point provides global information. It would be interesting to investigate situations in ants and other social organisms in a natural environment where groups are still offered two options (two food sources) but there is no pre-determined choice point. A setup of this kind for ants could consist of colonies of variable sizes connected to an open arena containing two identical food sources placed equidistant to the nest. The traffic that will eventually be established will still privilege paths leading to the food sources, but the information held by individuals will be purely local. In these conditions, we predict that beyond a critical size of the colony, individuals will display the three exploitation patterns seen in this paper. In particular, we predict a symmetry restoration at large colony sizes. Notice that symmetry restoring should be possible even in a maze type experiment provided that returns to the main branch of the maze can occur. A full analysis of this problem would require to incorporate in the description the navigation strategies employed. This is beyond the scope of the present work.</p>
<p>The coexistence of multiple steady states in our model is expected to enhance flexibility. In nature, food sources are not constantly available and colonies focussing on one source can take a long time to switch to another <xref ref-type="bibr" rid="pcbi.1003960-Nicolis4">[45]</xref>. However, in the region of coexistence between many solutions, a colony may quickly switch to another option <xref ref-type="bibr" rid="pcbi.1003960-Sumpter3">[35]</xref>. Previously this was shown to be the case in the presence of crowding <xref ref-type="bibr" rid="pcbi.1003960-Dussutour1">[24]</xref> or in the presence of more than two options <xref ref-type="bibr" rid="pcbi.1003960-Nicolis2">[18]</xref>. We suggest that this may also happen in an open environment in the presence of only two options and a regulation of traffic of the kind considered in this paper.</p>
</sec><sec id="s4" sec-type="materials|methods">
<title>Materials and Methods</title>
<p>We studied the model presented in the <xref ref-type="sec" rid="s1">Introduction</xref> in two ways, as a system of coupled differential equations as defined by eqs. (3) and via a Monte Carlo simulation.</p>
<sec id="s4a">
<title>Steady states and stability</title>
<p>We start by studying steady-state (time-independent) solutions of the system (3). Setting time derivatives to zero and denoting by <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e091" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e092" xlink:type="simple"/></inline-formula> the steady state solutions we arrive at the following system of algebraic equations<disp-formula id="pcbi.1003960.e093"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e093" xlink:type="simple"/></disp-formula><disp-formula id="pcbi.1003960.e094"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e094" xlink:type="simple"/><label>(4)</label></disp-formula></p>
    <p>By solving this system we can determine how the decision to choose one, two or zero options depends on the total mass <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e095" xlink:type="simple"/></inline-formula>. We notice that eqs. (3)–(4) secure positivity of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e096" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e097" xlink:type="simple"/></inline-formula> as well as the property <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e098" xlink:type="simple"/></inline-formula> whatever the values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e099" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e100" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e101" xlink:type="simple"/></inline-formula> might be, provided that these conditions are satisfied initially. Indeed, as <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e102" xlink:type="simple"/></inline-formula> approaches <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e103" xlink:type="simple"/></inline-formula> starting from smaller values the first (positive) term in the rhs of <xref ref-type="disp-formula" rid="pcbi.1003960.e094">eq. (4)</xref> will become increasingly small and the second (negative) term will dominate. As a result the time derivatives in <xref ref-type="disp-formula" rid="pcbi.1003960.e024">eq. (3)</xref> will be negative and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e104" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e105" xlink:type="simple"/></inline-formula> and their sum will be led to lesser values.</p>
<p>By evaluating the Jacobian at the steady states we can also determine their stability. In the general case, the Jacobian is<disp-formula id="pcbi.1003960.e106"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e106" xlink:type="simple"/></disp-formula>where <disp-formula id="pcbi.1003960.e107"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e107" xlink:type="simple"/></disp-formula>and <disp-formula id="pcbi.1003960.e108"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e108" xlink:type="simple"/></disp-formula></p>
<p>Thus the characteristic equation determining the eigenvalues of the Jacobian has the form <disp-formula id="pcbi.1003960.e109"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e109" xlink:type="simple"/></disp-formula></p>
<p>The steady states are stable as long as the real parts of the two (possibly complex) eigenvalues are negative. <xref ref-type="disp-formula" rid="pcbi.1003960.e024">Equations (3</xref>) admit four types of steady states. We now discuss the existence and stability of each of these in turn.</p>
<sec id="s4a1">
<title>The trivial solution <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e110" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e111" xlink:type="simple"/></inline-formula></title>
<p>This solution is always stable with corresponding double negative eigenvalue <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e112" xlink:type="simple"/></inline-formula>.</p>
</sec><sec id="s4a2">
<title>The semi-trivial solutions <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e113" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e114" xlink:type="simple"/></inline-formula></title>
<p>To find these solutions we let <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e115" xlink:type="simple"/></inline-formula> in <xref ref-type="disp-formula" rid="pcbi.1003960.e024">equations (3</xref>) then by simplifying we get <disp-formula id="pcbi.1003960.e116"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e116" xlink:type="simple"/></disp-formula></p>
<p>This gives <disp-formula id="pcbi.1003960.e117"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e117" xlink:type="simple"/><label>(5)</label></disp-formula></p>
<p>Among the solutions of the system (3) only real, positive solutions are acceptable. For the semi-trivial solution (5) to be real and positive we thus need <disp-formula id="pcbi.1003960.e118"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e118" xlink:type="simple"/><label>(6)</label></disp-formula></p>
<p>The equality sign gives the critical mass at which a limit point bifurcation occurs, see <xref ref-type="fig" rid="pcbi-1003960-g002">Fig. 2</xref>. Substituting the values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e119" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e120" xlink:type="simple"/></inline-formula> in the characteristic equation one finds that the semi-trivial solution corresponding to the upper branch of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e121" xlink:type="simple"/></inline-formula> is always stable and the lower branch is always unstable.</p>
<p>For large <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e122" xlink:type="simple"/></inline-formula> the upper branch is <disp-formula id="pcbi.1003960.e123"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e123" xlink:type="simple"/></disp-formula>while the lower branch tends to 0 as <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e124" xlink:type="simple"/></inline-formula>.</p>
</sec><sec id="s4a3">
<title>The non-trivial homogeneous solutions <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e125" xlink:type="simple"/></inline-formula></title>
<p>To find the solutions we set <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e126" xlink:type="simple"/></inline-formula> in the first equation of the system (3). By simplifying we get<disp-formula id="pcbi.1003960.e127"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e127" xlink:type="simple"/></disp-formula>so that <disp-formula id="pcbi.1003960.e128"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e128" xlink:type="simple"/><label>(7)</label></disp-formula></p>
<p>These solutions are real and positive if <disp-formula id="pcbi.1003960.e129"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e129" xlink:type="simple"/><label>(8)</label></disp-formula></p>
<p>The equality sign gives the critical mass at which a second limit point bifurcation occurs, see <xref ref-type="fig" rid="pcbi-1003960-g002">Fig. 2</xref>. Substituting <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e130" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e131" xlink:type="simple"/></inline-formula> in the characteristic equation one sees that these states are unstable for small values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e132" xlink:type="simple"/></inline-formula>. But as <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e133" xlink:type="simple"/></inline-formula> is increased well beyond <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e134" xlink:type="simple"/></inline-formula>, it turns out that the solution becomes stable and tends for large <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e135" xlink:type="simple"/></inline-formula> to <disp-formula id="pcbi.1003960.e136"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e136" xlink:type="simple"/></disp-formula>while the lower branch is unstable and tends to 0 as <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e137" xlink:type="simple"/></inline-formula>.</p>
</sec><sec id="s4a4">
<title>The fully non-trivial and non-homogeneous solutions <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e138" xlink:type="simple"/></inline-formula></title>
<p>To find these solutions we have to express <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e139" xlink:type="simple"/></inline-formula> from one equation of the system (3) in terms of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e140" xlink:type="simple"/></inline-formula> and substitute. The calculation reveals 6 solutions, but 4 of these are already described above. The remaining two solutions are <disp-formula id="pcbi.1003960.e141"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e141" xlink:type="simple"/><label>(9)</label></disp-formula></p>
<p>These solutions are real and positive as long as <disp-formula id="pcbi.1003960.e142"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e142" xlink:type="simple"/><label>(10)</label></disp-formula></p>
<p>The equality sign gives the critical mass at which solutions (9) are merging with the homogeneous branch (7). While these solutions are always unstable beyond the critical mass <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e143" xlink:type="simple"/></inline-formula>, the unstable upper branch of solution (7) becomes stable.</p>
<p>The third bifurcation occurring at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e144" xlink:type="simple"/></inline-formula> is thus a pitchfork type bifurcation. Notice that for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e145" xlink:type="simple"/></inline-formula> the upper branch of fully non-trivial solution behaves <disp-formula id="pcbi.1003960.e146"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e146" xlink:type="simple"/></disp-formula>while the lower branch of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e147" xlink:type="simple"/></inline-formula> tends to 0 as <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e148" xlink:type="simple"/></inline-formula>. This is the same asymptotic result as for the semi-trivial solution (6).</p>
<p>Summarising, the model admits the following physically acceptable steady-state solutions: the trivial solution <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e149" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e150" xlink:type="simple"/></inline-formula> corresponds to the absence of a decision, the semi-trivial solutions <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e151" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e152" xlink:type="simple"/></inline-formula> (or <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e153" xlink:type="simple"/></inline-formula> <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e154" xlink:type="simple"/></inline-formula>) correspond to an exclusive exploitation of one option, the non-trivial homogeneous solutions <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e155" xlink:type="simple"/></inline-formula> correspond to symmetric exploration of both options and the fully non-trivial and non-homogeneous solutions <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e156" xlink:type="simple"/></inline-formula> when <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e157" xlink:type="simple"/></inline-formula> or <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e158" xlink:type="simple"/></inline-formula> correspond to asymmetric exploitation.</p>
</sec></sec><sec id="s4b">
<title>Monte Carlo simulation</title>
<p>In order to incorporate the fluctuations inherent to the experiments, we developed a Monte Carlo approach by simulating directly the <xref ref-type="disp-formula" rid="pcbi.1003960.e024">equations (3</xref>). We describe the main principles of our Monte-Carlo simulation implementation in the following steps:</p>
<sec id="s4b1">
<title>Initial condition</title>
<p>We assume that the number of the units within the system committed to option 1 and 2, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e159" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e160" xlink:type="simple"/></inline-formula> initially are not zero. These values are generated from the uniform distribution on interval <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e161" xlink:type="simple"/></inline-formula>, where <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e162" xlink:type="simple"/></inline-formula> takes values of diameter values 4cm, 3.2 cm, 2.6 cm, 2.3 cm, 2 cm, 1.8 cm, 1.7 cm, 1.3 cm, 1 cm and 0.8 cm. Thus for different size of plasmodia initial values are generated from respective interval.</p>
</sec><sec id="s4b2">
<title>Decision process</title>
<p>The coupling in the choice between two options in our model (3) is weak because we use the choice functions which are independent to each other. The sum of coupled choice functions should be equal 1 thus they can be used as a probability to choose options. In our case first we have to define expressions: <disp-formula id="pcbi.1003960.e163"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e163" xlink:type="simple"/></disp-formula><disp-formula id="pcbi.1003960.e164"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e164" xlink:type="simple"/></disp-formula>then we construct probabilities to move to the options in the following way: <disp-formula id="pcbi.1003960.e165"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e165" xlink:type="simple"/></disp-formula><disp-formula id="pcbi.1003960.e166"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e166" xlink:type="simple"/></disp-formula><disp-formula id="pcbi.1003960.e167"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e167" xlink:type="simple"/></disp-formula><disp-formula id="pcbi.1003960.e168"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e168" xlink:type="simple"/><label>(11)</label></disp-formula></p>
<p>The decision concerns the movement of the mass to the options. To this end, a random number <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e169" xlink:type="simple"/></inline-formula> is sampled from a uniform distribution between 0 and 1:</p>
<list list-type="bullet"><list-item>
<p>if <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e170" xlink:type="simple"/></inline-formula>, a small mass unit (taken here to be <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e171" xlink:type="simple"/></inline-formula>) is added to <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e172" xlink:type="simple"/></inline-formula> (while <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e173" xlink:type="simple"/></inline-formula> remains unchanged)</p>
</list-item><list-item>
<p>if <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e174" xlink:type="simple"/></inline-formula>, a small mass unit is removed from <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e175" xlink:type="simple"/></inline-formula> (while <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e176" xlink:type="simple"/></inline-formula> remains unchanged)</p>
</list-item><list-item>
<p>if <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e177" xlink:type="simple"/></inline-formula>, a small mass unit is added to <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e178" xlink:type="simple"/></inline-formula> (while <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e179" xlink:type="simple"/></inline-formula> remains unchanged)</p>
</list-item><list-item>
<p>if <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e180" xlink:type="simple"/></inline-formula>, a small mass unit is removed from <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e181" xlink:type="simple"/></inline-formula> (while <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e182" xlink:type="simple"/></inline-formula> remains unchanged)</p>
</list-item></list>
</sec><sec id="s4b3">
<title>Time evolution</title>
<p>The probabilities represented by (11) are updated at each simulation step according to the actual mass movement to the particular option. The process is repeated for a number of steps (70 000) sufficient to reach the stationary state, where all presented mass <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e183" xlink:type="simple"/></inline-formula> will move to the options, in another words when expression <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e184" xlink:type="simple"/></inline-formula> will be equal zero.</p>
<p>The simulations run for 1000 realisations and we calculate the average mass value on the options. If most (at least 60%) of the mass is found to have moved to a particular option, we conclude that one option has been selected. If the mass is found to have spread equally between the options, we conclude that two options have been selected. Finally, if most of the mass has not moved, we conclude that no option has been selected.</p>
</sec></sec><sec id="s4c">
<title>Experiment</title>
<p>In the light of the model results, we conducted a series of experiments to determine how the mass of <italic>Physarum polycephalum</italic> plasmodium influences the foraging decision process when the individual is confronted with two identical food sources.</p>
<p><italic>Physarum polycephalum</italic> is a unicellular, true slime mold, typically yellow in colour, and inhabits shady, cool, moist areas such as decaying leaves and logs. It belongs to the supergroup Amoebozoa. The main vegetative phase of <italic>P. polycephalum</italic> is the multi-nucleate plasmodium (the active, streaming form) that consists of networks of protoplasmic veins and pseudopods. It is during this stage that the organism searches for food. In the wild, the plasmodium eats bacteria and dead organic matter and in the laboratory they are fed oat flakes.</p>
<p>We cultivated <italic>Physarum polycephalum</italic> on a 10<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e185" xlink:type="simple"/></inline-formula> oat medium in a Petri dish (diameter: 145 mm). The rolled oat were grained and set in 1<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e186" xlink:type="simple"/></inline-formula> agar solution for presentation to <italic>Physarum polycephalum</italic>. To compare the foraging solution predicted by the model with those of <italic>P. Polycephalum</italic>, we measured the foraging solutions produced by three different strains: Australian strain (Southern Biological Supplies, Victoria), American strain (Carolina Biological Supplies) and from Japanese strain (Strain HU192 x HU200) that exhibit different exploration patterns. The Japanese strain is fast, forming only a few thick tubes to explore the substrate covering a long distance but a small surface. The Australian strain spreads in all direction by forming multiple thin tubes, covering a large surface but a small distance. The American strain combines both exploration patterns. It forms both thick and thin tubes (see <xref ref-type="fig" rid="pcbi-1003960-g001">Fig. 1</xref> for a snapshot of the three different exploration patterns by these three strains).</p>
<p>In each trial one single plasmodium was confronted with two identical food sources. The food consisted in a 10<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e187" xlink:type="simple"/></inline-formula> oatmeal-agar mixture similar to the one used for rearing the plasmodia. The foraging arena were made by filling 90-mm diameter Petri dishes with plain 1<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e188" xlink:type="simple"/></inline-formula> agar. Once the agar set, we punched two circular holes (diameter: 1.7 cm, 2.5 cm away from each other) into the agar and filled them with food. Then we punched a third circular hole placed 2.5 cm away from each source which we filled with a plasmodium. The diameter of that last hole varied depending on plasmodium size.</p>
<p>We tested 10 plasmodium sizes (by extension, 10 plasmodium masses) corresponding to the following diameters: 4 cm, 3.2 cm, 2.6 cm, 2.3 cm, 2 cm, 1.8 cm, 1.7 cm, 1.3 cm, 1 cm and 0.8 cm. The distance between the border of the plasmodium and the food was kept at a fixed value equal to 2 cm, whatever the diameter tested.</p>
<p>We replicate each experiment 65 times for each plasmodium size and each strain (1950 experiments in total: 65 replicates <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e189" xlink:type="simple"/></inline-formula> 3 strains <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e190" xlink:type="simple"/></inline-formula> 10 plasmodium sized). All the experiments were conducted in the dark at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e191" xlink:type="simple"/></inline-formula> temperature and 70<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e192" xlink:type="simple"/></inline-formula> humidity. Experiments were run for 48 hours and pictures were taken every 5 min with a digital camera canon 60D.</p>
<p>Throughout the experiment the plasmodium explores its environment by deploying a network of protoplasmic tubes until a food source is discovered, whereupon a link between the food source and its initial position is built. We consider that a given source is chosen if the plasmodium moves toward it through the link and fully covers it. If on the other hand the plasmodium does not completely cover the food source and moves to the other one at the same time to eventually cover it in part, we consider that both sources are chosen. We recall that both experiment and theory concern the steady state behaviour. Transients are likely to be of interest as well, but are not addressed here. Finally, if after exploring the environment the plasmodium did not succeed in finding any food source during the time of experiment we consider that no choice has been made.</p>
<p>Summarising, we differentiated three distinct foraging patterns – the plasmodium exploits both food sources simultaneously, a single source and none of them – and calculated the proportion of replicates that ended up in these three states.</p>
</sec><sec id="s4d">
<title>Model fitting</title>
<p>We expect that our Monte Carlo simulation will capture a large proportion, but not all of the details of the real process. For example, for certain parameter values and masses our model predicts that the plasmodium will always move to exactly one option. In the data however, there is always some non-vanishing probability of a slime mould encountering two food sources. Acknowledging that our simulation model will not fully describe the many effects that could cause variation in the slime moulds behaviour, we must adapt our model fitting to allow for this in order to make our eventual fitted estimates of the simulation parameters robust. We thus modify our model fitting to account for variation that is not explained by the simulations, by fitting a mixture model comprising the simulation predictions, and a uniform distribution that represents all of the variation that is not accounted for in the simulation model. We thus introduce a new parameter, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e193" xlink:type="simple"/></inline-formula>, that controls the mixing proportion of the simulation predictions, and therefore represents the proportion of the experimental variation explained by the simulation model <xref ref-type="bibr" rid="pcbi.1003960-Mackay1">[46]</xref>.</p>
<p>Mathematically, to do the fitting, we let <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e194" xlink:type="simple"/></inline-formula> be the proportion of times the simulation with mass <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e195" xlink:type="simple"/></inline-formula> and parameters <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e196" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e197" xlink:type="simple"/></inline-formula> chooses <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e198" xlink:type="simple"/></inline-formula> food options. We denote by <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e199" xlink:type="simple"/></inline-formula> the experimental proportion of times a plasmodium of mass <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e200" xlink:type="simple"/></inline-formula> chose <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e201" xlink:type="simple"/></inline-formula> food sources. Let <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e202" xlink:type="simple"/></inline-formula> be this uniform distribution over the options, such that <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e203" xlink:type="simple"/></inline-formula>. Introducing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e204" xlink:type="simple"/></inline-formula> as the proportion of variation explained by our simulation and therefore the mixing ration of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e205" xlink:type="simple"/></inline-formula>, we have a prediction for the distribution of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e206" xlink:type="simple"/></inline-formula>: <disp-formula id="pcbi.1003960.e207"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pcbi.1003960.e207" xlink:type="simple"/><label>(12)</label></disp-formula>where we infer <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e208" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e209" xlink:type="simple"/></inline-formula> for each strain by finding the values that minimises the <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e210" xlink:type="simple"/></inline-formula> error term between this prediction and the experimental results. Identifying the best-fit values of the parameters is done by an exhaustive search over all combinations of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e211" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e212" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e213" xlink:type="simple"/></inline-formula> with steps of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e214" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e215" xlink:type="simple"/></inline-formula> and 0.01 respectively. While the inferred parameters <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e216" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e217" xlink:type="simple"/></inline-formula> are the best estimates for the internal processes of the slime mould described above, the inferred value of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e218" xlink:type="simple"/></inline-formula> indicates what proportion of the experimental variation can be attributed to the processes specified in the simulation model, rather than to all other factors accounted for by the uniform distribution. It is therefore encouraging that the inferred values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e219" xlink:type="simple"/></inline-formula> in our study are typically on the order of 0.9 (see <xref ref-type="table" rid="pcbi-1003960-t001">Table 1</xref>). As seen, the large values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pcbi.1003960.e220" xlink:type="simple"/></inline-formula> inferred indicate that our simulation predictions are a substantial improvement upon a null hypothesis that the slime mould chooses randomly between the three options.</p>
</sec></sec><sec id="s5">
<title>Supporting Information</title>
<supplementary-material id="pcbi.1003960.s001" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet" xlink:href="info:doi/10.1371/journal.pcbi.1003960.s001" position="float" xlink:type="simple"><label>S1 Text</label><caption>
<p><bold>The file contains the raw data of the experiments described in the <xref ref-type="sec" rid="s4">Materials and Methods</xref> section.</bold></p>
<p>(XLSX)</p>
</caption></supplementary-material></sec></body>
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