chr1	1736	4224	HIT000500255_01	0	+	1736	4224	0	3	354,127,959	0,721,1529
chr1	77023	78648	K562.2	0	+	77023	78648	0	2	9,1132	0,493
chr1	131335	139570	Rinn_00000438	0	-	131335	139570	0	2	1539,3323	0,4912
chr1	131336	139570	ENST00000484859	0	-	131336	139570	0	2	1538,3322	0,4912
chr1	154267	163727	ENST00000466557	0	-	154267	163727	0	6	387,59,66,216,132,112	0,1479,3695,4644,8152,9348
chr1	224654	227988	K562.44	0	.	224654	227988	0	1	3334	0
chr1	311899	314606	ENST00000440038	0	+	311899	314606	0	3	192,58,305	0,2251,2402
chr1	429227	443585	ENST00000440163	0	+	429227	443585	0	3	204,180,78	0,6649,14280
chr1	667055	675259	ENST00000416385	0	-	667055	675259	0	2	1538,3322	0,4882
chr1	690058	703869	HIT000032783	0	-	690058	703869	0	7	432,59,66,216,132,110,343	0,1513,3732,4681,8160,9355,13468
chr1	690099	703869	ENST00000428504	0	-	690099	703869	0	7	391,59,66,216,132,110,343	0,1472,3691,4640,8119,9314,13427
chr1	690107	703931	NR_033908	0	-	690107	703931	0	7	383,59,66,216,132,110,405	0,1464,3683,4632,8111,9306,13419
chr1	713949	714256	HeLa_polyA+_Chen.7	0	.	713949	714256	0	1	307	0
chr1	713973	714397	H1_polyA+.11	0	.	713973	714397	0	1	424	0
chr1	714064	716948	B_Cells_Pritchard.231	0	+	714064	716948	0	5	160,289,24,19,66	0,943,1647,1675,2818
chr1	714556	714922	B_cells_Cheung.21	0	.	714556	714922	0	1	366	0
chr1	714562	716930	prostate_carcinoma.12	0	-	714562	716930	0	2	169,286	0,2082
chr1	715022	715471	B_cells_Cheung.23	0	.	715022	715471	0	1	449	0
chr1	715068	715726	H1_polyA+.12	0	.	715068	715726	0	1	658	0
chr1	715097	715465	CD4_Plagnol_resting.2	0	.	715097	715465	0	1	368	0
chr1	715534	716086	REMC_LuminalBreast.22	0	.	715534	716086	0	1	552	0
chr1	715551	716087	B_cells_Cheung.24	0	.	715551	716087	0	1	536	0
chr1	715869	716735	H1_polyA+.13	0	.	715869	716735	0	1	866	0
chr1	716148	716905	HepG2_Caltech_ENCODE.9	0	.	716148	716905	0	1	757	0
chr1	716385	716956	B_cells_Cheung.25	0	.	716385	716956	0	1	571	0
chr1	726121	735404	ENST00000447500	0	-	726121	735404	0	4	285,93,50,95	0,4920,7695,9188
chr1	744016	744551	REMC_BreastStem.7	0	.	744016	744551	0	1	535	0
chr1	744993	748943	B_cells_Cheung.47	0	.	744993	748943	0	1	3950	0
chr1	745028	745699	REMC_MyoepithelialBreast.11	0	.	745028	745699	0	1	671	0
chr1	745038	748953	REMC_BreastStem.9	0	.	745038	748953	0	1	3915	0
chr1	745062	745485	CD4_Plagnol_activated.12	0	.	745062	745485	0	1	423	0
chr1	745074	745559	K562.5	0	.	745074	745559	0	1	485	0
chr1	745125	746310	H1_rRNA-depleted_UCSD_REMC.6	0	.	745125	746310	0	1	1185	0
chr1	745158	748961	REMC_LuminalBreast.30	0	.	745158	748961	0	1	3803	0
chr1	745173	748924	B_Cells_Pritchard.479	0	+	745173	748924	0	3	1015,1511,1207	0,1015,2544
chr1	745253	746041	brain_AmbionMAQC.4	0	.	745253	746041	0	1	788	0
chr1	745555	748721	H1_polyA+.28	0	+	745555	748721	0	2	557,2294	0,872
chr1	745767	746140	IMR90_UCSD_REMC.3	0	+	745767	746140	0	1	373	0
chr1	745790	748931	REMC_MyoepithelialBreast.13	0	.	745790	748931	0	1	3141	0
chr1	745834	748931	CD4_Plagnol_activated.11	0	.	745834	748931	0	1	3097	0
chr1	745870	748437	prostate_normal.11	0	+	745870	748437	0	2	242,2115	0,452
chr1	745913	748396	HepG2_Caltech_ENCODE.11	0	.	745913	748396	0	1	2483	0
chr1	745917	747164	Rinn_00001909	0	+	745917	747164	0	2	735,373	0,874
chr1	746127	748882	brain_AmbionMAQC.5	0	.	746127	748882	0	1	2755	0
chr1	746257	748809	CD4_Plagnol_resting.4	0	.	746257	748809	0	1	2552	0
chr1	746272	748838	Rinn_00000779	0	+	746272	748838	0	2	260,317	0,2249
chr1	746313	747105	HeLa_polyA+_Chen.9	0	.	746313	747105	0	1	792	0
chr1	746369	747618	H1_rRNA-depleted_UCSD_REMC.8	0	.	746369	747618	0	1	1249	0
chr1	746385	747674	K562.6	0	.	746385	747674	0	1	1289	0
chr1	746423	746796	IMR90_UCSD_REMC.6	0	+	746423	746796	0	1	373	0
chr1	746471	747285	MIP101.11	0	.	746471	747285	0	1	814	0
chr1	746678	747878	liver_polyA+.2	0	+	746678	747878	0	2	445,56	0,1144
chr1	747818	748459	K562.7	0	.	747818	748459	0	1	641	0
chr1	747990	748319	IMR90_UCSD_REMC.7	0	+	747990	748319	0	1	329	0
chr1	748188	748942	H1_rRNA-depleted_UCSD_REMC.7	0	.	748188	748942	0	1	754	0
chr1	748419	748924	IMR90_UCSD_REMC.9	0	+	748419	748924	0	1	505	0
chr1	748489	748824	prostate_normal.5	0	.	748489	748824	0	1	335	0
chr1	751415	752749	HIT000009566	0	-	751415	752749	0	1	1334	0
chr1	751425	752765	HIT000038118	0	-	751425	752765	0	1	1340	0
chr1	751448	752765	NR_024321	0	-	751448	752765	0	1	1317	0
chr1	751448	752765	ENST00000473798	0	-	751448	752765	0	1	1317	0
chr1	751681	752775	K562.12	0	.	751681	752775	0	1	1094	0
chr1	751775	752176	B_cells_Cheung.34	0	.	751775	752176	0	1	401	0
chr1	751778	768746	B_Cells_Pritchard.293	0	+	751778	768746	0	2	1240,276	0,16692
chr1	751780	752109	REMC_MyoepithelialBreast.14	0	.	751780	752109	0	1	329	0
chr1	751942	753315	pHIT000000006	0	-	751942	753315	0	2	437,436	0,937
chr1	752244	777668	pHIT000096946	0	-	752244	777668	0	5	74,132,95,94,217	0,635,7509,20423,25207
chr1	752287	752729	B_cells_Cheung.33	0	.	752287	752729	0	1	442	0
chr1	756847	768855	HIT000266144	0	+	756847	768855	0	2	73,2413	0,9595
chr1	758944	759385	REMC_LuminalBreast.37	0	.	758944	759385	0	1	441	0
chr1	761503	761994	REMC_LuminalBreast.39	0	.	761503	761994	0	1	491	0
chr1	761537	761976	REMC_MyoepithelialBreast.19	0	.	761537	761976	0	1	439	0
chr1	764468	764995	B_cells_Cheung.42	0	.	764468	764995	0	1	527	0
chr1	779477	781076	REMC_LuminalBreast.46	0	.	779477	781076	0	1	1599	0
chr1	779504	781067	REMC_MyoepithelialBreast.38	0	.	779504	781067	0	1	1563	0
chr1	779674	780775	CD4_Plagnol_activated.22	0	.	779674	780775	0	1	1101	0
chr1	779770	781084	H1_polyA+.16	0	.	779770	781084	0	1	1314	0
chr1	780019	781063	B_cells_Cheung.65	0	.	780019	781063	0	1	1044	0
chr1	780035	780780	brain_AmbionMAQC.12	0	.	780035	780780	0	1	745	0
chr1	780037	780803	HeLa_polyA+_Chen.17	0	.	780037	780803	0	1	766	0
chr1	780040	780415	CD4_Plagnol_resting.19	0	.	780040	780415	0	1	375	0
chr1	780289	780756	prostate_normal.18	0	.	780289	780756	0	1	467	0
chr1	781215	781711	K562.18	0	.	781215	781711	0	1	496	0
chr1	781253	783614	HIT000021425	0	-	781253	783614	0	1	2361	0
chr1	781282	782134	REMC_LuminalBreast.49	0	.	781282	782134	0	1	852	0
chr1	781291	782536	REMC_MyoepithelialBreast.37	0	.	781291	782536	0	1	1245	0
chr1	781293	782134	REMC_BreastStem.25	0	.	781293	782134	0	1	841	0
chr1	781327	782122	HepG2_Caltech_ENCODE.19	0	.	781327	782122	0	1	795	0
chr1	781338	781796	CD4_Plagnol_activated.23	0	.	781338	781796	0	1	458	0
chr1	781348	782097	B_cells_Cheung.63	0	.	781348	782097	0	1	749	0
chr1	781353	781786	melanoma_Garraway_short_term_cultures.13	0	.	781353	781786	0	1	433	0
chr1	781362	781784	H1_polyA+.15	0	.	781362	781784	0	1	422	0
chr1	781436	781796	prostate_normal.24	0	.	781436	781796	0	1	360	0
chr1	781464	781809	brain_AmbionMAQC.11	0	.	781464	781809	0	1	345	0
chr1	781469	781799	BT474_Burge_Thompson.10	0	.	781469	781799	0	1	330	0
chr1	782774	784687	HIT000015967	0	-	782774	784687	0	1	1913	0
chr1	783976	784686	REMC_MyoepithelialBreast.36	0	.	783976	784686	0	1	710	0
chr1	784031	784358	brain_AmbionMAQC.14	0	.	784031	784358	0	1	327	0
chr1	824774	825601	B_Cells_Pritchard.373	0	.	824774	825601	0	1	827	0
chr1	829319	829731	B_cells_Cheung.70	0	.	829319	829731	0	1	412	0
chr1	829556	833756	B_Cells_Pritchard.523	0	-	829556	833756	0	2	3121,967	0,3233
chr1	829556	833756	B_Cells_Pritchard.521	0	+	829556	833756	0	3	1366,1633,967	0,1488,3233
chr1	829867	832722	B_cells_Cheung.82	0	.	829867	832722	0	1	2855	0
chr1	829867	832722	B_cells_Cheung.81	0	+	829867	832722	0	2	337,2185	0,670
chr1	829927	832468	prostate_carcinoma.618	0	.	829927	832468	0	1	2541	0
chr1	830014	831292	MCF7_Burge_Thompson.182	0	.	830014	831292	0	1	1278	0
chr1	830068	832650	BT474_Burge_Thompson.104	0	+	830068	832650	0	2	136,2113	0,469
chr1	830077	832464	prostate_normal.385	0	.	830077	832464	0	1	2387	0
chr1	830078	833208	HeLa_polyA+_Chen.28	0	+	830078	833208	0	3	126,233,2164	0,611,966
chr1	830317	831130	MDAMB468_Thompson.10	0	.	830317	831130	0	1	813	0
chr1	830332	833811	H1_polyA+.64	0	.	830332	833811	0	1	3479	0
chr1	830363	832481	melanoma_Garraway_short_term_cultures.15	0	.	830363	832481	0	1	2118	0
chr1	830374	831877	H9_polyA+.10	0	.	830374	831877	0	1	1503	0
chr1	830392	832467	T47D_Burge_Thompson.5	0	+	830392	832467	0	2	530,1423	0,652
chr1	830392	832467	T47D_Burge_Thompson.6	0	.	830392	832467	0	1	2075	0
chr1	830417	832650	BT474_Burge_Thompson.105	0	.	830417	832650	0	1	2233	0
chr1	830689	833208	HeLa_polyA+_Chen.29	0	.	830689	833208	0	1	2519	0
chr1	831084	832396	BT20_Thompson.46	0	.	831084	832396	0	1	1312	0
chr1	831374	832118	K562.22	0	.	831374	832118	0	1	744	0
chr1	831477	832511	MCF7_Burge_Thompson.184	0	.	831477	832511	0	1	1034	0
chr1	831791	832471	MDAMB468_Thompson.11	0	.	831791	832471	0	1	680	0
chr1	831992	832418	H9_polyA+.11	0	.	831992	832418	0	1	426	0
chr1	832782	833822	B_cells_Cheung.76	0	.	832782	833822	0	1	1040	0
chr1	832791	833776	prostate_carcinoma.619	0	.	832791	833776	0	1	985	0
chr1	832822	833777	prostate_normal.386	0	.	832822	833777	0	1	955	0
chr1	832827	833681	melanoma_Garraway_short_term_cultures.16	0	.	832827	833681	0	1	854	0
chr1	833258	833769	HeLa_polyA+_Chen.21	0	.	833258	833769	0	1	511	0
chr1	833326	835171	Rinn_00001368	0	-	833326	835171	0	2	299,54	0,1791
chr1	833361	847465	BT20_Thompson.47	0	+	833361	847465	0	2	94,6473	0,7631
chr1	833388	833777	T47D_Burge_Thompson.7	0	.	833388	833777	0	1	389	0
chr1	834123	835519	pHIT000096958	0	-	834123	835519	0	4	157,270,265,97	0,288,644,1299
chr1	834347	848386	pHIT000096947	0	-	834347	848386	0	4	334,265,71,131	0,420,7409,13908
chr1	834411	847905	pHIT000000010	0	-	834411	847905	0	3	270,265,76	0,356,13418
chr1	835033	839937	H1_polyA+.65	0	.	835033	839937	0	1	4904	0
chr1	835047	840882	BT474_Burge_Thompson.107	0	.	835047	840882	0	1	5835	0
chr1	835087	837156	MCF7_Burge_Thompson.185	0	.	835087	837156	0	1	2069	0
chr1	835088	837359	ZR751_Thompson.128	0	.	835088	837359	0	1	2271	0
chr1	835113	839959	B_Cells_Pritchard.445	0	.	835113	839959	0	1	4846	0
chr1	835351	838550	B_cells_Cheung.75	0	.	835351	838550	0	1	3199	0
chr1	835376	836247	BT20_Thompson.49	0	.	835376	836247	0	1	871	0
chr1	835465	847400	H1_polyA+.67	0	+	835465	847400	0	3	2710,503,6408	0,4746,5527
chr1	835524	839911	HeLa_polyA+_Chen.23	0	.	835524	839911	0	1	4387	0
chr1	835643	836572	T47D_Burge_Thompson.11	0	.	835643	836572	0	1	929	0
chr1	835647	837962	melanoma_Garraway_short_term_cultures.17	0	.	835647	837962	0	1	2315	0
chr1	835779	839923	MIP101.88	0	.	835779	839923	0	1	4144	0
chr1	835898	836612	K562.23	0	.	835898	836612	0	1	714	0
chr1	835958	837146	H9_polyA+.13	0	.	835958	837146	0	1	1188	0
chr1	836623	839731	BT20_Thompson.50	0	.	836623	839731	0	1	3108	0
chr1	836676	840191	Rinn_00000032	0	+	836676	840191	0	2	40,3005	0,510
chr1	836677	840191	ENST00000448179	0	+	836677	840191	0	2	39,3004	0,510
chr1	836677	840191	HIT000013100	0	+	836677	840191	0	2	39,3004	0,510
chr1	837183	839912	MCF7_Burge_Thompson.186	0	.	837183	839912	0	1	2729	0
chr1	837197	838541	H9_polyA+.14	0	.	837197	838541	0	1	1344	0
chr1	837569	838155	T47D_Burge_Thompson.12	0	.	837569	838155	0	1	586	0
chr1	837652	839939	ZR751_Thompson.129	0	.	837652	839939	0	1	2287	0
chr1	837685	840041	HIT000086665	0	+	837685	840041	0	1	2356	0
chr1	837981	839102	REMC_LuminalBreast.62	0	.	837981	839102	0	1	1121	0
chr1	838102	839943	melanoma_Garraway_short_term_cultures.18	0	.	838102	839943	0	1	1841	0
chr1	838602	839934	B_cells_Cheung.74	0	.	838602	839934	0	1	1332	0
chr1	838684	839163	H9_polyA+.15	0	.	838684	839163	0	1	479	0
chr1	839390	839713	H9_polyA+.16	0	.	839390	839713	0	1	323	0
chr1	840089	840908	B_cells_Cheung.73	0	.	840089	840908	0	1	819	0
chr1	840097	843608	B_Cells_Pritchard.477	0	+	840097	843608	0	1	3511	0
chr1	840207	840819	T47D_Burge_Thompson.30	0	.	840207	840819	0	1	612	0
chr1	840215	840892	A549_Myers.891	0	.	840215	840892	0	1	677	0
chr1	840889	843647	melanoma_Garraway_short_term_cultures.20	0	.	840889	843647	0	1	2758	0
chr1	840944	847400	H1_polyA+.66	0	.	840944	847400	0	1	6456	0
chr1	841002	849112	MIP101.89	0	.	841002	849112	0	1	8110	0
chr1	841005	848712	BT20_Thompson.48	0	-	841005	848712	0	2	6952,457	0,7250
chr1	841010	842083	B_cells_Cheung.79	0	.	841010	842083	0	1	1073	0
chr1	841046	841740	T47D_Burge_Thompson.31	0	.	841046	841740	0	1	694	0
chr1	841048	841742	MCF10A_Thompson.42	0	.	841048	841742	0	1	694	0
chr1	841995	843501	REMC_LuminalBreast.63	0	.	841995	843501	0	1	1506	0
chr1	842055	842703	brain_AmbionMAQC.15	0	.	842055	842703	0	1	648	0
chr1	842075	843913	HIT000091033	0	-	842075	843913	0	1	1838	0
chr1	842111	844935	Rinn_00000445	0	-	842111	844935	0	4	852,90,92,359	0,1152,1955,2465
chr1	842112	844935	ENST00000417705	0	-	842112	844935	0	4	851,89,91,358	0,1152,1955,2465
chr1	842202	843383	B_cells_Cheung.78	0	.	842202	843383	0	1	1181	0
chr1	842223	843364	liver_polyA+.6	0	.	842223	843364	0	1	1141	0
chr1	842680	843578	Rinn_00002277	0	-	842680	843578	0	2	283,315	0,583
chr1	842817	846259	HIT000021783	0	-	842817	846259	0	1	3442	0
chr1	843119	848942	BT474_Burge_Thompson.109	0	+	843119	848942	0	2	2205,3479	0,2344
chr1	843459	844640	liver_polyA+.8	0	.	843459	844640	0	1	1181	0
chr1	843968	844775	B_Cells_Pritchard.395	0	.	843968	844775	0	1	807	0
chr1	844207	844525	testes_Burge.3	0	.	844207	844525	0	1	318	0
chr1	845129	846236	brain_AmbionMAQC.19	0	.	845129	846236	0	1	1107	0
chr1	845255	846238	B_Cells_Pritchard.399	0	.	845255	846238	0	1	983	0
chr1	845459	846227	B_cells_Cheung.80	0	.	845459	846227	0	1	768	0
chr1	845777	846367	testes_Burge.47	0	.	845777	846367	0	1	590	0
chr1	845848	846219	H9_polyA+.5	0	.	845848	846219	0	1	371	0
chr1	846540	847781	HeLa_polyA-_Chen.3	0	.	846540	847781	0	1	1241	0
chr1	846584	847195	liver_polyA+.10	0	.	846584	847195	0	1	611	0
chr1	846592	847835	REMC_LuminalBreast.64	0	.	846592	847835	0	1	1243	0
chr1	847488	848074	brain_AmbionMAQC.18	0	.	847488	848074	0	1	586	0
chr1	849251	849972	colon_Burge.2	0	.	849251	849972	0	1	721	0
chr1	907453	907930	prostate_carcinoma.628	0	.	907453	907930	0	1	477	0
chr1	911449	921860	REMC_LuminalBreast.293	0	.	911449	921860	0	1	10411	0
chr1	916294	920501	REMC_MyoepithelialBreast.46	0	.	916294	920501	0	1	4207	0
chr1	918502	919177	B_Cells_Pritchard.513	0	.	918502	919177	0	1	675	0
chr1	920995	921704	B_Cells_Pritchard.519	0	.	920995	921704	0	1	709	0
chr1	921220	921681	A549_Myers.4	0	.	921220	921681	0	1	461	0
chr1	921240	921688	MIP101.12340	0	.	921240	921688	0	1	448	0
chr1	922071	923123	melanoma_Garraway_short_term_cultures.39	0	.	922071	923123	0	1	1052	0
chr1	922075	922771	T47D_Burge_Thompson.14	0	.	922075	922771	0	1	696	0
chr1	922079	922833	K562.32	0	.	922079	922833	0	1	754	0
chr1	922080	922847	brain_AmbionMAQC.30	0	.	922080	922847	0	1	767	0
chr1	922303	922805	liver_polyA+.19	0	.	922303	922805	0	1	502	0
chr1	922342	922824	BT474_Burge_Thompson.14	0	.	922342	922824	0	1	482	0
chr1	982862	984562	REMC_LuminalBreast.300	0	.	982862	984562	0	1	1700	0
chr1	984702	985016	A549_Myers.10202	0	.	984702	985016	0	1	314	0
chr1	984910	985334	MIP101.12412	0	.	984910	985334	0	1	424	0
chr1	984930	985295	melanoma_Garraway_short_term_cultures.50	0	.	984930	985295	0	1	365	0
chr1	984931	985350	H1_polyA+.750	0	.	984931	985350	0	1	419	0
chr1	984944	987721	HIT000429216	0	+	984944	987721	0	5	81,117,170,98,630	0,575,837,1318,2147
chr1	984947	985410	MDAMB468_Thompson.13	0	.	984947	985410	0	1	463	0
chr1	984951	985316	MDAMB231_Thompson.24	0	.	984951	985316	0	1	365	0
chr1	984957	985354	CD4_Plagnol_activated.36	0	.	984957	985354	0	1	397	0
chr1	985522	986096	H1_polyA+.751	0	.	985522	986096	0	1	574	0
chr1	985527	986145	CD4_Plagnol_resting.32	0	.	985527	986145	0	1	618	0
chr1	985529	986184	MCF10A_Thompson.28	0	.	985529	986184	0	1	655	0
chr1	985547	986218	melanoma_Garraway_short_term_cultures.51	0	.	985547	986218	0	1	671	0
chr1	986485	987289	MCF10A_Thompson.31	0	.	986485	987289	0	1	804	0
chr1	986495	987687	melanoma_Garraway_short_term_cultures.52	0	.	986495	987687	0	1	1192	0
chr1	986504	987295	CD4_Plagnol_activated.39	0	.	986504	987295	0	1	791	0
chr1	986550	987814	CD4_Plagnol_resting.34	0	.	986550	987814	0	1	1264	0
chr1	986553	987255	MCF7_Burge_Thompson.366	0	.	986553	987255	0	1	702	0
chr1	986846	987273	MDAMB231_Thompson.26	0	.	986846	987273	0	1	427	0
chr1	987329	988276	MDAMB231_Thompson.27	0	.	987329	988276	0	1	947	0
chr1	993416	993815	MB435_Burge.9	0	.	993416	993815	0	1	399	0
chr1	999785	1000794	prostate_carcinoma.644	0	.	999785	1000794	0	1	1009	0
chr1	999795	1000305	A549_Myers.10205	0	.	999795	1000305	0	1	510	0
chr1	1004657	1005172	HepG2_Caltech_ENCODE.335	0	.	1004657	1005172	0	1	515	0
chr1	1004684	1005308	A549_Myers.10206	0	.	1004684	1005308	0	1	624	0
chr1	1004720	1005251	prostate_carcinoma.645	0	.	1004720	1005251	0	1	531	0
chr1	1005360	1005921	B_cells_Cheung.106	0	.	1005360	1005921	0	1	561	0
chr1	1005521	1005908	prostate_carcinoma.646	0	.	1005521	1005908	0	1	387	0
chr1	1043583	1043893	A549_Myers.13	0	.	1043583	1043893	0	1	310	0
chr1	1047027	1047815	A549_Myers.14	0	.	1047027	1047815	0	1	788	0
chr1	1048126	1049629	HepG2_Caltech_ENCODE.35	0	.	1048126	1049629	0	1	1503	0
chr1	1048556	1048868	A549_Myers.15	0	.	1048556	1048868	0	1	312	0
chr1	1048927	1049519	A549_Myers.16	0	-	1048927	1049519	0	2	234,224	0,368
chr1	1049208	1049519	A549_Myers.17	0	.	1049208	1049519	0	1	311	0
chr1	1049907	1051542	HepG2_Caltech_ENCODE.37	0	.	1049907	1051542	0	1	1635	0
chr1	1051621	1052108	HepG2_Caltech_ENCODE.36	0	.	1051621	1052108	0	1	487	0
chr1	1053088	1054159	HepG2_Caltech_ENCODE.45	0	.	1053088	1054159	0	1	1071	0
chr1	1054405	1055196	BT474_Burge_Thompson.27	0	.	1054405	1055196	0	1	791	0
chr1	1054605	1055008	colon_Burge.36	0	.	1054605	1055008	0	1	403	0
chr1	1054644	1056759	REMC_LuminalBreast.73	0	.	1054644	1056759	0	1	2115	0
chr1	1055490	1068578	prostate_carcinoma.6267	0	+	1055490	1068578	0	2	1226,487	0,12601
chr1	1056933	1058696	prostate_carcinoma.6269	0	.	1056933	1058696	0	1	1763	0
chr1	1057604	1058716	REMC_LuminalBreast.74	0	.	1057604	1058716	0	1	1112	0
chr1	1062224	1062805	BT474_Burge_Thompson.30	0	.	1062224	1062805	0	1	581	0
chr1	1062259	1069371	HIT000091445	0	+	1062259	1069371	0	3	94,208,1390	0,3808,5722
chr1	1062259	1069299	ENST00000416774	0	+	1062259	1069299	0	3	94,208,1318	0,3808,5722
chr1	1062889	1063542	MIP101.20	0	.	1062889	1063542	0	1	653	0
chr1	1063124	1063573	BT474_Burge_Thompson.31	0	.	1063124	1063573	0	1	449	0
chr1	1063798	1066332	BT474_Burge_Thompson.32	0	-	1063798	1066332	0	2	650,420	0,2114
chr1	1063835	1064258	prostate_carcinoma.6272	0	.	1063835	1064258	0	1	423	0
chr1	1065927	1066630	prostate_carcinoma.6273	0	.	1065927	1066630	0	1	703	0
chr1	1065940	1066369	MIP101.21	0	.	1065940	1066369	0	1	429	0
chr1	1066217	1069091	HIT000390600	0	+	1066217	1069091	0	2	25,1110	0,1764
chr1	1066796	1069302	BT474_Burge_Thompson.33	0	.	1066796	1069302	0	1	2506	0
chr1	1066799	1067285	prostate_carcinoma.6274	0	.	1066799	1067285	0	1	486	0
chr1	1067733	1069343	prostate_carcinoma.6268	0	.	1067733	1069343	0	1	1610	0
chr1	1067754	1069222	MIP101.22	0	.	1067754	1069222	0	1	1468	0
chr1	1068898	1070525	HepG2_Caltech_ENCODE.46	0	.	1068898	1070525	0	1	1627	0
chr1	1070293	1070797	B_Cells_Pritchard.651	0	.	1070293	1070797	0	1	504	0
chr1	1077806	1079884	REMC_LuminalBreast.76	0	.	1077806	1079884	0	1	2078	0
chr1	1078491	1079900	HepG2_Caltech_ENCODE.47	0	.	1078491	1079900	0	1	1409	0
chr1	1079317	1079626	prostate_normal.40	0	.	1079317	1079626	0	1	309	0
chr1	1080051	1081452	REMC_LuminalBreast.75	0	.	1080051	1081452	0	1	1401	0
chr1	1080407	1082115	prostate_carcinoma.6271	0	.	1080407	1082115	0	1	1708	0
chr1	1080559	1081926	B_cells_Cheung.111	0	.	1080559	1081926	0	1	1367	0
chr1	1080919	1081563	B_Cells_Pritchard.695	0	-	1080919	1081563	0	1	644	0
chr1	1082651	1082997	A549_Myers.20	0	.	1082651	1082997	0	1	346	0
chr1	1082741	1084125	B_cells_Cheung.113	0	.	1082741	1084125	0	1	1384	0
chr1	1082775	1083987	prostate_carcinoma.6278	0	.	1082775	1083987	0	1	1212	0
chr1	1083069	1084137	B_Cells_Pritchard.703	0	-	1083069	1084137	0	1	1068	0
chr1	1083445	1083892	A549_Myers.21	0	.	1083445	1083892	0	1	447	0
chr1	1084420	1085174	HepG2_Caltech_ENCODE.50	0	.	1084420	1085174	0	1	754	0
chr1	1084594	1087349	B_Cells_Pritchard.679	0	.	1084594	1087349	0	1	2755	0
chr1	1084829	1085208	B_cells_Cheung.114	0	.	1084829	1085208	0	1	379	0
chr1	1085359	1088061	HepG2_Caltech_ENCODE.51	0	.	1085359	1088061	0	1	2702	0
chr1	1085359	1089442	B_cells_Cheung.115	0	.	1085359	1089442	0	1	4083	0
chr1	1085449	1085935	A549_Myers.22	0	.	1085449	1085935	0	1	486	0
chr1	1088052	1090498	BT474_Burge_Thompson.34	0	.	1088052	1090498	0	1	2446	0
chr1	1088078	1091774	MDAMB468_Thompson.19	0	.	1088078	1091774	0	1	3696	0
chr1	1088102	1088718	T47D_Burge_Thompson.20	0	.	1088102	1088718	0	1	616	0
chr1	1088717	1090746	H1_polyA+.39	0	.	1088717	1090746	0	1	2029	0
chr1	1088777	1091699	T47D_Burge_Thompson.21	0	.	1088777	1091699	0	1	2922	0
chr1	1088971	1089964	ZR751_Thompson.18	0	.	1088971	1089964	0	1	993	0
chr1	1089521	1090122	B_cells_Cheung.116	0	.	1089521	1090122	0	1	601	0
chr1	1089691	1090195	HepG2_Caltech_ENCODE.42	0	.	1089691	1090195	0	1	504	0
chr1	1090225	1091501	MCF10A_Thompson.32	0	.	1090225	1091501	0	1	1276	0
chr1	1090300	1091672	ZR751_Thompson.19	0	.	1090300	1091672	0	1	1372	0
chr1	1090878	1091652	H1_polyA+.38	0	.	1090878	1091652	0	1	774	0
chr1	1091219	1091630	H1_rRNA-depleted_UCSD_REMC.68	0	.	1091219	1091630	0	1	411	0
chr1	1091543	1091897	A549_Myers.24	0	.	1091543	1091897	0	1	354	0
chr1	1094346	1095674	REMC_BreastStem.41	0	.	1094346	1095674	0	1	1328	0
chr1	1094355	1095501	H9_polyA+.51	0	.	1094355	1095501	0	1	1146	0
chr1	1094816	1095736	B_cells_Cheung.120	0	.	1094816	1095736	0	1	920	0
chr1	1094871	1095581	REMC_MyoepithelialBreast.60	0	.	1094871	1095581	0	1	710	0
chr1	1095029	1095580	liver_polyA+.45	0	.	1095029	1095580	0	1	551	0
chr1	1095808	1096349	B_Cells_Pritchard.693	0	.	1095808	1096349	0	1	541	0
chr1	1095973	1097454	REMC_LuminalBreast.77	0	.	1095973	1097454	0	1	1481	0
chr1	1096403	1096850	B_cells_Cheung.121	0	.	1096403	1096850	0	1	447	0
chr1	1124576	1127061	CD4_Plagnol_activated.56	0	.	1124576	1127061	0	1	2485	0
chr1	1124596	1125778	REMC_MyoepithelialBreast.66	0	.	1124596	1125778	0	1	1182	0
chr1	1125220	1125546	B_Cells_Pritchard.837	0	.	1125220	1125546	0	1	326	0
chr1	1126088	1126511	B_Cells_Pritchard.843	0	.	1126088	1126511	0	1	423	0
chr1	1126647	1127034	A549_Myers.1440	0	.	1126647	1127034	0	1	387	0
chr1	1133263	1135154	B_cells_Cheung.4962	0	.	1133263	1135154	0	1	1891	0
chr1	1133515	1134103	REMC_MyoepithelialBreast.67	0	.	1133515	1134103	0	1	588	0
chr1	1133560	1135091	B_Cells_Pritchard.963	0	+	1133560	1135091	0	1	1531	0
chr1	1161459	1162123	MIP101.1749	0	.	1161459	1162123	0	1	664	0
chr1	1162074	1162778	B_cells_Cheung.4969	0	.	1162074	1162778	0	1	704	0
chr1	1162183	1163037	MIP101.1750	0	.	1162183	1163037	0	1	854	0
chr1	1163169	1164024	A549_Myers.1450	0	.	1163169	1164024	0	1	855	0
chr1	1164559	1164864	A549_Myers.1451	0	.	1164559	1164864	0	1	305	0
chr1	1165031	1165462	A549_Myers.1452	0	.	1165031	1165462	0	1	431	0
chr1	1175621	1176569	REMC_LuminalBreast.119	0	.	1175621	1176569	0	1	948	0
chr1	1175759	1176789	B_cells_Cheung.4973	0	.	1175759	1176789	0	1	1030	0
chr1	1175776	1176611	CD4_Plagnol_activated.86	0	.	1175776	1176611	0	1	835	0
chr1	1175792	1176622	MDAMB468_Thompson.23	0	.	1175792	1176622	0	1	830	0
chr1	1175804	1176723	CD4_Plagnol_resting.48	0	.	1175804	1176723	0	1	919	0
chr1	1175859	1176418	brain_AmbionMAQC.60	0	.	1175859	1176418	0	1	559	0
chr1	1175872	1176614	prostate_normal.762	0	.	1175872	1176614	0	1	742	0
chr1	1176093	1176625	liver_polyA+.65	0	.	1176093	1176625	0	1	532	0
chr1	1293181	1295062	REMC_MyoepithelialBreast.86	0	.	1293181	1295062	0	1	1881	0
chr1	1294211	1294569	B_cells_Cheung.134	0	.	1294211	1294569	0	1	358	0
chr1	1294696	1295080	B_cells_Cheung.135	0	.	1294696	1295080	0	1	384	0
chr1	1295822	1296996	REMC_LuminalBreast.108	0	.	1295822	1296996	0	1	1174	0
chr1	1295915	1296466	REMC_MyoepithelialBreast.87	0	.	1295915	1296466	0	1	551	0
chr1	1296547	1297417	melanoma_Garraway_short_term_cultures.108	0	.	1296547	1297417	0	1	870	0
chr1	1296564	1297473	REMC_MyoepithelialBreast.88	0	.	1296564	1297473	0	1	909	0
chr1	1296601	1296981	A549_Myers.1492	0	.	1296601	1296981	0	1	380	0
chr1	1297096	1297952	REMC_LuminalBreast.109	0	.	1297096	1297952	0	1	856	0
chr1	1297105	1297911	A549_Myers.1493	0	.	1297105	1297911	0	1	806	0
chr1	1302431	1303431	REMC_LuminalBreast.196	0	.	1302431	1303431	0	1	1000	0
chr1	1305583	1307614	B_Cells_Pritchard.5275	0	+	1305583	1307614	0	1	2031	0
chr1	1305706	1306334	prostate_normal.250	0	.	1305706	1306334	0	1	628	0
chr1	1307008	1307510	prostate_normal.251	0	.	1307008	1307510	0	1	502	0
chr1	1334039	1334471	brain_AmbionMAQC.173	0	.	1334039	1334471	0	1	432	0
chr1	1334061	1335057	H1_rRNA-depleted_UCSD_REMC.137	0	.	1334061	1335057	0	1	996	0
chr1	1347744	1348448	ZR751_Thompson.53	0	.	1347744	1348448	0	1	704	0
chr1	1347755	1348490	HepG2_Caltech_ENCODE.13567	0	.	1347755	1348490	0	1	735	0
chr1	1354266	1356227	REMC_LuminalBreast.130	0	.	1354266	1356227	0	1	1961	0
chr1	1355263	1356394	MDAMB468_Thompson.60	0	.	1355263	1356394	0	1	1131	0
chr1	1355382	1356221	testes_Burge.115	0	.	1355382	1356221	0	1	839	0
chr1	1355396	1356265	liver_polyA+.85	0	.	1355396	1356265	0	1	869	0
chr1	1355396	1355710	kidney_Gilad.99	0	.	1355396	1355710	0	1	314	0
chr1	1355521	1356038	adipose_Burge.73	0	.	1355521	1356038	0	1	517	0
chr1	1355680	1356052	breast_Burge.110	0	.	1355680	1356052	0	1	372	0
chr1	1355781	1359816	ENST00000430109	0	-	1355781	1359816	0	2	124,386	0,3649
chr1	1355792	1359731	ENST00000454562	0	-	1355792	1359731	0	2	113,311	0,3628
chr1	1355792	1357086	ENST00000434150	0	-	1355792	1357086	0	2	405,39	0,1255
chr1	1355906	1359763	ENST00000417917	0	-	1355906	1359763	0	2	291,343	0,3514
chr1	1357131	1357607	A549_Myers.30	0	.	1357131	1357607	0	1	476	0
chr1	1357669	1358250	REMC_LuminalBreast.131	0	.	1357669	1358250	0	1	581	0
chr1	1357768	1358365	A549_Myers.31	0	.	1357768	1358365	0	1	597	0
chr1	1358352	1358909	H9_polyA-_Chen.44	0	.	1358352	1358909	0	1	557	0
chr1	1358777	1359269	K562.81	0	.	1358777	1359269	0	1	492	0
chr1	1369344	1369667	liver_polyA+.91	0	.	1369344	1369667	0	1	323	0
chr1	1369408	1369782	B_Cells_Pritchard.989	0	.	1369408	1369782	0	1	374	0
chr1	1814565	1815058	B_cells_Cheung.368	0	.	1814565	1815058	0	1	493	0
chr1	1815189	1816683	B_cells_Cheung.369	0	.	1815189	1816683	0	1	1494	0
chr1	1815905	1829020	prostate_carcinoma.2361	0	-	1815905	1829020	0	2	12,1647	0,11468
chr1	1822565	1823629	B_Cells_Pritchard.1381	0	.	1822565	1823629	0	1	1064	0
chr1	1822978	1823675	B_cells_Cheung.371	0	.	1822978	1823675	0	1	697	0
chr1	1824142	1829441	B_Cells_Pritchard.1383	0	+	1824142	1829441	0	10	88,593,194,194,171,186,493,197,420,100	0,144,1708,2092,2475,3218,3496,4053,4436,5199
chr1	1824274	1824885	B_cells_Cheung.372	0	.	1824274	1824885	0	1	611	0
chr1	1825779	1826828	B_cells_Cheung.374	0	.	1825779	1826828	0	1	1049	0
chr1	1825850	1833473	B_Cells_Pritchard.1385	0	-	1825850	1833473	0	9	1013,228,1064,498,1016,425,365,1266,258	0,1302,1557,2677,3625,5147,5624,6047,7365
chr1	1827267	1829048	B_cells_Cheung.375	0	.	1827267	1829048	0	1	1781	0
chr1	1827294	1829004	prostate_carcinoma.2362	0	.	1827294	1829004	0	1	1710	0
chr1	1827304	1829031	prostate_normal.88	0	.	1827304	1829031	0	1	1727	0
chr1	1827314	1828399	melanoma_Garraway_short_term_cultures.224	0	.	1827314	1828399	0	1	1085	0
chr1	1827556	1828169	H1_polyA+.158	0	.	1827556	1828169	0	1	613	0
chr1	1827592	1828237	BT474_Burge_Thompson.173	0	.	1827592	1828237	0	1	645	0
chr1	1827680	1829013	MIP101.771	0	.	1827680	1829013	0	1	1333	0
chr1	1827889	1828607	brain_AmbionMAQC.142	0	.	1827889	1828607	0	1	718	0
chr1	1828525	1829022	H1_polyA+.159	0	.	1828525	1829022	0	1	497	0
chr1	1828851	1831216	A549_Myers.99	0	-	1828851	1831216	0	2	100,265	0,2100
chr1	1829279	1830462	B_cells_Cheung.376	0	.	1829279	1830462	0	1	1183	0
chr1	1829591	1830502	prostate_carcinoma.2367	0	.	1829591	1830502	0	1	911	0
chr1	1829882	1830208	prostate_normal.91	0	.	1829882	1830208	0	1	326	0
chr1	1830974	1834103	H1_polyA+.160	0	.	1830974	1834103	0	1	3129	0
chr1	1830982	1833448	B_cells_Cheung.378	0	.	1830982	1833448	0	1	2466	0
chr1	1830986	1832768	BT474_Burge_Thompson.174	0	.	1830986	1832768	0	1	1782	0
chr1	1831025	1832338	REMC_LuminalBreast.278	0	.	1831025	1832338	0	1	1313	0
chr1	1831035	1833476	prostate_carcinoma.2368	0	.	1831035	1833476	0	1	2441	0
chr1	1831390	1832788	ZR751_Thompson.116	0	.	1831390	1832788	0	1	1398	0
chr1	1831574	1833393	MCF7_Burge_Thompson.122	0	.	1831574	1833393	0	1	1819	0
chr1	1832071	1833456	prostate_normal.94	0	.	1832071	1833456	0	1	1385	0
chr1	1832245	1832876	pHIT000000187	0	-	1832245	1832876	0	3	216,75,132	0,292,499
chr1	1832709	1833082	A549_Myers.101	0	.	1832709	1833082	0	1	373	0
chr1	1934459	1937879	brain_AmbionMAQC.164	0	.	1934459	1937879	0	1	3420	0
chr1	1934459	1937879	brain_AmbionMAQC.166	0	-	1934459	1937879	0	2	1840,1400	0,2020
chr1	1935432	1937872	H1_polyA+.170	0	.	1935432	1937872	0	1	2440	0
chr1	1954808	1955222	kidney_Gilad.182	0	.	1954808	1955222	0	1	414	0
chr1	1954808	1955428	liver_polyA+.217	0	.	1954808	1955428	0	1	620	0
chr1	1954808	1955730	H1_polyA+.178	0	.	1954808	1955730	0	1	922	0
chr1	1957150	1957658	HepG2_Caltech_ENCODE.148	0	.	1957150	1957658	0	1	508	0
chr1	1957158	1957630	liver_polyA+.220	0	.	1957158	1957630	0	1	472	0
chr1	1957228	1958067	H1_polyA+.180	0	.	1957228	1958067	0	1	839	0
chr1	1957698	1958063	liver_polyA+.222	0	.	1957698	1958063	0	1	365	0
chr1	1961964	1962721	H1_polyA+.182	0	.	1961964	1962721	0	1	757	0
chr1	1963113	1963501	liver_polyA+.225	0	.	1963113	1963501	0	1	388	0
chr1	1963156	1963753	H1_polyA+.183	0	.	1963156	1963753	0	1	597	0
chr1	1963275	1963857	HepG2_Caltech_ENCODE.146	0	.	1963275	1963857	0	1	582	0
chr1	1964397	1965052	HepG2_Caltech_ENCODE.149	0	.	1964397	1965052	0	1	655	0
chr1	1965117	1965609	HepG2_Caltech_ENCODE.150	0	.	1965117	1965609	0	1	492	0
chr1	1969265	1969638	A549_Myers.126	0	.	1969265	1969638	0	1	373	0
chr1	1970501	1970950	ENST00000445600	0	-	1970501	1970950	0	2	266,54	0,395
chr1	1970527	1971426	Rinn_00001374	0	-	1970527	1971426	0	2	240,531	0,368
chr1	1970601	1971369	Rinn_00000453	0	-	1970601	1971369	0	3	166,70,204	0,294,564
chr1	1970602	1971369	ENST00000449154	0	-	1970602	1971369	0	3	165,69,203	0,294,564
chr1	2134224	2134879	XR_041871	0	-	2134224	2134879	0	1	655	0
chr1	2135067	2136294	B_Cells_Pritchard.2233	0	.	2135067	2136294	0	1	1227	0
chr1	2135146	2137925	liver_polyA+.236	0	.	2135146	2137925	0	1	2779	0
chr1	2136624	2137686	HepG2_Caltech_ENCODE.111	0	.	2136624	2137686	0	1	1062	0
chr1	2136641	2137001	BT474_Burge_Thompson.194	0	.	2136641	2137001	0	1	360	0
chr1	2136812	2137730	H1_polyA+.241	0	.	2136812	2137730	0	1	918	0
chr1	2137325	2137723	A549_Myers.171	0	.	2137325	2137723	0	1	398	0
chr1	2137355	2137683	B_Cells_Pritchard.2239	0	.	2137355	2137683	0	1	328	0
chr1	2137829	2138392	H1_polyA+.242	0	.	2137829	2138392	0	1	563	0
chr1	2137862	2138343	prostate_normal.128	0	.	2137862	2138343	0	1	481	0
chr1	2137864	2138325	A549_Myers.172	0	.	2137864	2138325	0	1	461	0
chr1	2137968	2138269	B_Cells_Pritchard.2241	0	.	2137968	2138269	0	1	301	0
chr1	2137983	2138335	liver_polyA+.237	0	.	2137983	2138335	0	1	352	0
chr1	2141784	2142790	prostate_normal.130	0	.	2141784	2142790	0	1	1006	0
chr1	2145416	2146746	H1_polyA+.244	0	.	2145416	2146746	0	1	1330	0
chr1	2145451	2146239	B_cells_Cheung.399	0	.	2145451	2146239	0	1	788	0
chr1	2147800	2148502	B_Cells_Pritchard.2291	0	-	2147800	2148502	0	1	702	0
chr1	2347277	2351949	Rinn_00000138	0	+	2347277	2351949	0	2	59,314	0,4358
chr1	2347863	2362127	pHIT000000203	0	-	2347863	2362127	0	4	143,69,152,485	0,8601,12778,13779
chr1	2351448	2351756	A549_Myers.203	0	.	2351448	2351756	0	1	308	0
chr1	2354220	2354952	prostate_carcinoma.498	0	.	2354220	2354952	0	1	732	0
chr1	2355105	2356105	prostate_carcinoma.499	0	.	2355105	2356105	0	1	1000	0
chr1	2356464	2362127	pHIT000000205	0	-	2356464	2362127	0	3	69,152,485	0,4177,5178
chr1	2357214	2359482	prostate_normal.195	0	-	2357214	2359482	0	2	48,660	0,1608
chr1	2360928	2361712	prostate_carcinoma.500	0	.	2360928	2361712	0	1	784	0
chr1	2364865	2365490	A549_Myers.205	0	.	2364865	2365490	0	1	625	0
chr1	2364921	2365413	brain_AmbionMAQC.195	0	.	2364921	2365413	0	1	492	0
chr1	2365191	2366600	prostate_carcinoma.501	0	.	2365191	2366600	0	1	1409	0
chr1	2381127	2381481	A549_Myers.209	0	.	2381127	2381481	0	1	354	0
chr1	2427979	2428459	HepG2_Caltech_ENCODE.172	0	.	2427979	2428459	0	1	480	0
chr1	2428193	2428569	liver_polyA+.352	0	.	2428193	2428569	0	1	376	0
chr1	2452080	2453630	B_Cells_Pritchard.3041	0	+	2452080	2453630	0	1	1550	0
chr1	2453388	2453735	B_cells_Cheung.522	0	.	2453388	2453735	0	1	347	0
chr1	2454589	2455360	B_Cells_Pritchard.3051	0	-	2454589	2455360	0	1	771	0
chr1	2454943	2455647	prostate_carcinoma.118	0	.	2454943	2455647	0	1	704	0
chr1	2455511	2457066	B_Cells_Pritchard.3055	0	-	2455511	2457066	0	1	1555	0
chr1	2455770	2457066	B_Cells_Pritchard.3053	0	+	2455770	2457066	0	3	367,425,264	0,520,1032
chr1	2455850	2456384	brain_AmbionMAQC.202	0	.	2455850	2456384	0	1	534	0
chr1	2455870	2456206	prostate_normal.201	0	.	2455870	2456206	0	1	336	0
chr1	2455947	2456717	prostate_carcinoma.119	0	.	2455947	2456717	0	1	770	0
chr1	2456173	2456485	B_cells_Cheung.523	0	.	2456173	2456485	0	1	312	0
chr1	2456797	2457198	A549_Myers.227	0	.	2456797	2457198	0	1	401	0
chr1	2457183	2458016	B_Cells_Pritchard.3057	0	-	2457183	2458016	0	1	833	0
chr1	2457377	2457924	prostate_carcinoma.120	0	.	2457377	2457924	0	1	547	0
chr1	2458232	2459176	prostate_carcinoma.121	0	.	2458232	2459176	0	1	944	0
chr1	2458241	2459455	B_Cells_Pritchard.3061	0	+	2458241	2459455	0	2	406,667	0,547
chr1	2458262	2459177	prostate_normal.203	0	.	2458262	2459177	0	1	915	0
chr1	2458268	2458881	brain_AmbionMAQC.203	0	.	2458268	2458881	0	1	613	0
chr1	2459693	2460583	prostate_carcinoma.122	0	.	2459693	2460583	0	1	890	0
chr1	2461439	2472040	prostate_carcinoma.268	0	-	2461439	2472040	0	3	213,50,169	0,10084,10432
chr1	2462118	2462788	B_cells_Cheung.525	0	.	2462118	2462788	0	1	670	0
chr1	2462947	2463672	prostate_normal.205	0	.	2462947	2463672	0	1	725	0
chr1	2462953	2463591	brain_AmbionMAQC.206	0	.	2462953	2463591	0	1	638	0
chr1	2463525	2463997	B_cells_Cheung.526	0	.	2463525	2463997	0	1	472	0
chr1	2464253	2465175	brain_AmbionMAQC.207	0	.	2464253	2465175	0	1	922	0
chr1	2464437	2464844	B_cells_Cheung.528	0	.	2464437	2464844	0	1	407	0
chr1	2465409	2467623	brain_AmbionMAQC.208	0	.	2465409	2467623	0	1	2214	0
chr1	2465609	2466906	A549_Myers.229	0	.	2465609	2466906	0	1	1297	0
chr1	2466093	2466459	B_cells_Cheung.529	0	.	2466093	2466459	0	1	366	0
chr1	2467111	2469998	B_cells_Cheung.531	0	.	2467111	2469998	0	1	2887	0
chr1	2467499	2469878	B_Cells_Pritchard.4103	0	-	2467499	2469878	0	1	2379	0
chr1	2467635	2468838	MIP101.68	0	.	2467635	2468838	0	1	1203	0
chr1	2467636	2468789	MCF7_Burge_Thompson.194	0	.	2467636	2468789	0	1	1153	0
chr1	2467641	2468741	BT474_Burge_Thompson.229	0	.	2467641	2468741	0	1	1100	0
chr1	2467657	2468756	BT20_Thompson.148	0	.	2467657	2468756	0	1	1099	0
chr1	2467669	2468191	testes_Burge.329	0	.	2467669	2468191	0	1	522	0
chr1	2467676	2469982	CD4_Plagnol_resting.221	0	.	2467676	2469982	0	1	2306	0
chr1	2467683	2468744	H1_polyA+.301	0	.	2467683	2468744	0	1	1061	0
chr1	2467692	2468718	H9_polyA+.249	0	.	2467692	2468718	0	1	1026	0
chr1	2467705	2468758	T47D_Burge_Thompson.156	0	.	2467705	2468758	0	1	1053	0
chr1	2467707	2469009	melanoma_Garraway_short_term_cultures.289	0	.	2467707	2469009	0	1	1302	0
chr1	2467715	2468441	MDAMB231_Thompson.125	0	.	2467715	2468441	0	1	726	0
chr1	2467717	2468751	MB435_Burge.280	0	.	2467717	2468751	0	1	1034	0
chr1	2467717	2468752	liver_polyA+.365	0	.	2467717	2468752	0	1	1035	0
chr1	2467724	2468758	brain_AmbionMAQC.209	0	.	2467724	2468758	0	1	1034	0
chr1	2467770	2468559	MCF10A_Thompson.128	0	.	2467770	2468559	0	1	789	0
chr1	2467786	2468757	lymph_node_Burge.297	0	.	2467786	2468757	0	1	971	0
chr1	2467802	2469887	REMC_LuminalBreast.321	0	.	2467802	2469887	0	1	2085	0
chr1	2467808	2468663	ZR751_Thompson.175	0	.	2467808	2468663	0	1	855	0
chr1	2467813	2468835	MeWo_Garraway.159	0	.	2467813	2468835	0	1	1022	0
chr1	2467815	2468546	adipose_Burge.202	0	.	2467815	2468546	0	1	731	0
chr1	2468115	2468576	K562.167	0	.	2468115	2468576	0	1	461	0
chr1	2468274	2468758	testes_Burge.330	0	.	2468274	2468758	0	1	484	0
chr1	2468294	2468756	MDAMB468_Thompson.168	0	.	2468294	2468756	0	1	462	0
chr1	2468906	2469877	prostate_carcinoma.272	0	.	2468906	2469877	0	1	971	0
chr1	2470052	2470625	B_cells_Cheung.532	0	.	2470052	2470625	0	1	573	0
chr1	2471206	2473836	B_Cells_Pritchard.4101	0	+	2471206	2473836	0	3	217,202,341	0,653,2289
chr1	2471217	2474144	Rinn_00000075	0	-	2471217	2474144	0	3	356,160,1855	0,653,1072
chr1	2471217	2474144	Rinn_00000015	0	-	2471217	2474144	0	2	356,1855	0,1072
chr1	2471218	2473405	HIT000005041	0	-	2471218	2473405	0	3	355,159,1115	0,653,1072
chr1	2471218	2474144	NR_026927	0	-	2471218	2474144	0	2	355,1854	0,1072
chr1	2471218	2473405	ENST00000449660	0	-	2471218	2473405	0	3	355,159,1115	0,653,1072
chr1	2471372	2472897	HIT000387236	0	+	2471372	2472897	0	2	201,607	0,918
chr1	2471512	2473329	B_cells_Cheung.535	0	+	2471512	2473329	0	2	73,644	0,1173
chr1	2471580	2474144	Rinn_00000076	0	-	2471580	2474144	0	2	450,1855	0,709
chr1	2471725	2472055	B_cells_Cheung.537	0	.	2471725	2472055	0	1	330	0
chr1	2472275	2473283	K562.168	0	.	2472275	2473283	0	1	1008	0
chr1	2472355	2473329	B_cells_Cheung.536	0	.	2472355	2473329	0	1	974	0
chr1	2472375	2473350	REMC_LuminalBreast.322	0	.	2472375	2473350	0	1	975	0
chr1	2472376	2473294	melanoma_Garraway_short_term_cultures.290	0	.	2472376	2473294	0	1	918	0
chr1	2472564	2473141	Rinn_00001917	0	+	2472564	2473141	0	2	25,457	0,120
chr1	2475325	2475810	melanoma_Garraway_short_term_cultures.292	0	.	2475325	2475810	0	1	485	0
chr1	2490289	2490788	REMC_LuminalBreast.328	0	.	2490289	2490788	0	1	499	0
chr1	2490414	2490775	B_cells_Cheung.1644	0	.	2490414	2490775	0	1	361	0
chr1	2491368	2493152	melanoma_Garraway_short_term_cultures.297	0	.	2491368	2493152	0	1	1784	0
chr1	2491379	2493077	MeWo_Garraway.217	0	.	2491379	2493077	0	1	1698	0
chr1	2491429	2492999	REMC_LuminalBreast.329	0	.	2491429	2492999	0	1	1570	0
chr1	2491436	2492283	CD4_Plagnol_activated.395	0	.	2491436	2492283	0	1	847	0
chr1	2491444	2492912	REMC_BreastStem.150	0	.	2491444	2492912	0	1	1468	0
chr1	2491565	2493002	MeI_Garraway.72	0	.	2491565	2493002	0	1	1437	0
chr1	2493715	2496012	melanoma_Garraway_short_term_cultures.299	0	.	2493715	2496012	0	1	2297	0
chr1	2493773	2496128	REMC_LuminalBreast.330	0	.	2493773	2496128	0	1	2355	0
chr1	2494304	2496036	B_cells_Cheung.1645	0	.	2494304	2496036	0	1	1732	0
chr1	2496510	2498003	B_Cells_Pritchard.5303	0	+	2496510	2498003	0	1	1493	0
chr1	2496602	2498030	B_cells_Cheung.1646	0	.	2496602	2498030	0	1	1428	0
chr1	2496640	2498136	REMC_LuminalBreast.331	0	.	2496640	2498136	0	1	1496	0
chr1	2496720	2497993	melanoma_Garraway_short_term_cultures.300	0	.	2496720	2497993	0	1	1273	0
chr1	2496797	2497928	CD4_Plagnol_activated.397	0	.	2496797	2497928	0	1	1131	0
chr1	2498312	2498951	REMC_MyoepithelialBreast.267	0	.	2498312	2498951	0	1	639	0
chr1	2499109	2499509	CD4_Plagnol_activated.398	0	.	2499109	2499509	0	1	400	0
chr1	2499367	2500362	REMC_BreastStem.152	0	.	2499367	2500362	0	1	995	0
chr1	2499367	2500669	B_cells_Cheung.1648	0	.	2499367	2500669	0	1	1302	0
chr1	2499402	2501518	REMC_LuminalBreast.332	0	.	2499402	2501518	0	1	2116	0
chr1	2499548	2500553	REMC_MyoepithelialBreast.268	0	.	2499548	2500553	0	1	1005	0
chr1	2499633	2500552	CD4_Plagnol_activated.399	0	.	2499633	2500552	0	1	919	0
chr1	2500042	2500563	B_Cells_Pritchard.5321	0	-	2500042	2500563	0	1	521	0
chr1	2504489	2505830	CD4_Plagnol_activated.403	0	.	2504489	2505830	0	1	1341	0
chr1	2504502	2505583	MIP101.69	0	.	2504502	2505583	0	1	1081	0
chr1	2504577	2505833	CD4_Plagnol_resting.235	0	.	2504577	2505833	0	1	1256	0
chr1	2504587	2505801	REMC_LuminalBreast.333	0	.	2504587	2505801	0	1	1214	0
chr1	2505001	2505821	prostate_normal.211	0	.	2505001	2505821	0	1	820	0
chr1	2505697	2506904	MIP101.70	0	.	2505697	2506904	0	1	1207	0
chr1	2506025	2506549	CD4_Snyder.167	0	.	2506025	2506549	0	1	524	0
chr1	2706468	2715543	pHIT000097074	0	-	2706468	2715543	0	2	825,214	0,8861
chr1	2706967	2707320	A549_Myers.244	0	.	2706967	2707320	0	1	353	0
chr1	2718273	2719117	Rinn_00000457	0	-	2718273	2719117	0	2	150,459	0,385
chr1	2718274	2719117	ENST00000457440	0	-	2718274	2719117	0	2	149,458	0,385
chr1	2725781	2726084	A549_Myers.246	0	.	2725781	2726084	0	1	303	0
chr1	2728462	2728772	A549_Myers.247	0	.	2728462	2728772	0	1	310	0
chr1	2773819	2774151	A549_Myers.248	0	.	2773819	2774151	0	1	332	0
chr1	2782307	2782616	A549_Myers.249	0	.	2782307	2782616	0	1	309	0
chr1	2789720	2790130	A549_Myers.251	0	.	2789720	2790130	0	1	410	0
chr1	2810368	2810980	A549_Myers.252	0	.	2810368	2810980	0	1	612	0
chr1	2964431	2964874	brain_AmbionMAQC.251	0	.	2964431	2964874	0	1	443	0
chr1	2964721	2965042	kidney_Raymond.152	0	.	2964721	2965042	0	1	321	0
chr1	2965953	2967169	Rinn_00001379	0	-	2965953	2967169	0	3	208,55,246	0,699,970
chr1	2966020	2968955	HIT000026668	0	-	2966020	2968955	0	1	2935	0
chr1	2966164	2968509	prostate_carcinoma.129	0	.	2966164	2968509	0	1	2345	0
chr1	2966849	2967215	prostate_normal.218	0	.	2966849	2967215	0	1	366	0
chr1	2966851	2967898	Rinn_00001380	0	-	2966851	2967898	0	2	177,369	0,678
chr1	2968382	2968819	ENST00000420957	0	-	2968382	2968819	0	2	234,201	0,236
chr1	2969596	2970480	prostate_normal.220	0	.	2969596	2970480	0	1	884	0
chr1	3350445	3352235	HepG2_Caltech_ENCODE.219	0	.	3350445	3352235	0	1	1790	0
chr1	3388597	3389361	prostate_normal.235	0	.	3388597	3389361	0	1	764	0
chr1	3389228	3390161	REMC_LuminalBreast.355	0	.	3389228	3390161	0	1	933	0
chr1	3389529	3391989	prostate_normal.236	0	.	3389529	3391989	0	1	2460	0
chr1	3683632	3684574	T47D_Burge_Thompson.188	0	.	3683632	3684574	0	1	942	0
chr1	3683771	3684496	ZR751_Thompson.203	0	.	3683771	3684496	0	1	725	0
chr1	3683944	3684806	BT20_Thompson.177	0	.	3683944	3684806	0	1	862	0
chr1	3684116	3685317	A549_Myers.384	0	.	3684116	3685317	0	1	1201	0
chr1	3706045	3706364	B_Cells_Pritchard.11797	0	+	3706045	3706364	0	1	319	0
chr1	3807033	3821406	REMC_LuminalBreast.417	0	+	3807033	3821406	0	2	22,1291	0,13082
chr1	3808503	3811439	HepG2_Caltech_ENCODE.234	0	.	3808503	3811439	0	1	2936	0
chr1	3808635	3809671	MIP101.194	0	.	3808635	3809671	0	1	1036	0
chr1	3809447	3811082	H1_polyA+.394	0	.	3809447	3811082	0	1	1635	0
chr1	3809642	3811410	B_Cells_Pritchard.5607	0	.	3809642	3811410	0	1	1768	0
chr1	3809888	3810838	B_cells_Cheung.649	0	.	3809888	3810838	0	1	950	0
chr1	3811502	3823533	HepG2_Caltech_ENCODE.236	0	+	3811502	3823533	0	2	2192,623	0,11408
chr1	3811638	3813616	H1_polyA+.395	0	.	3811638	3813616	0	1	1978	0
chr1	3812449	3813911	B_Cells_Pritchard.5609	0	+	3812449	3813911	0	1	1462	0
chr1	3814990	3816575	H1_polyA+.397	0	.	3814990	3816575	0	1	1585	0
chr1	3815235	3819157	HepG2_Caltech_ENCODE.238	0	.	3815235	3819157	0	1	3922	0
chr1	3815249	3816034	B_Cells_Pritchard.5617	0	.	3815249	3816034	0	1	785	0
chr1	3819282	3820285	B_cells_Cheung.657	0	.	3819282	3820285	0	1	1003	0
chr1	3819302	3820283	HepG2_Caltech_ENCODE.235	0	.	3819302	3820283	0	1	981	0
chr1	3819318	3823382	B_Cells_Pritchard.5627	0	.	3819318	3823382	0	1	4064	0
chr1	3820466	3823533	HepG2_Caltech_ENCODE.237	0	.	3820466	3823533	0	1	3067	0
chr1	3820539	3823383	MIP101.195	0	.	3820539	3823383	0	1	2844	0
chr1	3820564	3821080	MB435_Burge.361	0	.	3820564	3821080	0	1	516	0
chr1	3820606	3823460	B_cells_Cheung.658	0	.	3820606	3823460	0	1	2854	0
chr1	3820824	3821750	MDAMB231_Thompson.161	0	.	3820824	3821750	0	1	926	0
chr1	3820852	3821710	HeLa_polyA+_Chen.271	0	.	3820852	3821710	0	1	858	0
chr1	3821413	3821833	A549_Myers.378	0	.	3821413	3821833	0	1	420	0
chr1	3900536	3915182	ENST00000412674	0	+	3900536	3915182	0	3	82,150,3010	0,377,11636
chr1	3900536	3915182	HIT000044581	0	+	3900536	3915182	0	3	82,150,3010	0,377,11636
chr1	3905597	3906167	prostate_carcinoma.210	0	.	3905597	3906167	0	1	570	0
chr1	3906285	3906984	prostate_carcinoma.211	0	.	3906285	3906984	0	1	699	0
chr1	3907173	3908445	prostate_carcinoma.212	0	.	3907173	3908445	0	1	1272	0
chr1	3908952	3909445	prostate_carcinoma.213	0	.	3908952	3909445	0	1	493	0
chr1	3936047	3969611	Rinn_00000822	0	+	3936047	3969611	0	3	68,222,27	0,753,33537
chr1	3936058	4014238	K562.268	0	+	3936058	4014238	0	8	57,276,126,759,70,153,1994,231	0,743,20668,21917,27807,33527,34670,77949
chr1	3936799	3937131	BT20_Thompson.200	0	.	3936799	3937131	0	1	332	0
chr1	3936886	3958120	Rinn_00001926	0	+	3936886	3958120	0	3	136,127,146	0,19839,21088
chr1	3952257	3952774	B_Cells_Pritchard.5863	0	.	3952257	3952774	0	1	517	0
chr1	3957080	3957428	B_Cells_Pritchard.5883	0	.	3957080	3957428	0	1	348	0
chr1	3966754	3967177	K562.273	0	.	3966754	3967177	0	1	423	0
chr1	3967491	3967922	B_Cells_Pritchard.5931	0	.	3967491	3967922	0	1	431	0
chr1	4015687	4016004	K562.258	0	.	4015687	4016004	0	1	317	0
chr1	4018408	4018759	B_Cells_Pritchard.6085	0	.	4018408	4018759	0	1	351	0
chr1	4020038	4021560	B_cells_Cheung.660	0	.	4020038	4021560	0	1	1522	0
chr1	4020070	4021886	B_Cells_Pritchard.6089	0	.	4020070	4021886	0	1	1816	0
chr1	4227641	4228743	HepG2_Caltech_ENCODE.240	0	.	4227641	4228743	0	1	1102	0
chr1	4231031	4231542	B_Cells_Pritchard.6605	0	.	4231031	4231542	0	1	511	0
chr1	4233053	4234086	MIP101.128	0	.	4233053	4234086	0	1	1033	0
chr1	4233403	4234118	HepG2_Caltech_ENCODE.241	0	.	4233403	4234118	0	1	715	0
chr1	4371969	4384604	Rinn_00000003	0	+	4371969	4384604	0	6	583,36,238,429,102,692	0,3502,4261,10709,11297,11943
chr1	4371970	4384607	ENST00000423197	0	+	4371970	4384607	0	6	582,35,237,428,101,694	0,3502,4261,10709,11297,11943
chr1	4371970	4384604	NR_027088	0	+	4371970	4384604	0	6	582,35,237,428,101,691	0,3502,4261,10709,11297,11943
chr1	4372097	4384568	Rinn_00000824	0	+	4372097	4384568	0	5	172,36,238,396,656	0,3374,4133,10875,11815
chr1	4372426	4384581	Rinn_00000825	0	+	4372426	4384581	0	5	126,36,238,102,669	0,3045,3804,10840,11486
chr1	4382858	4384568	Rinn_00001927	0	+	4382858	4384568	0	2	510,656	0,1054
chr1	4587241	4589258	B_cells_Cheung.663	0	-	4587241	4589258	0	2	578,943	0,1074
chr1	4589312	4592782	B_cells_Cheung.665	0	.	4589312	4592782	0	1	3470	0
chr1	4593094	4595549	B_cells_Cheung.667	0	.	4593094	4595549	0	1	2455	0
chr1	4596288	4597304	B_cells_Cheung.668	0	.	4596288	4597304	0	1	1016	0
chr1	4602387	4603084	B_Cells_Pritchard.7513	0	.	4602387	4603084	0	1	697	0
chr1	4602511	4603093	B_cells_Cheung.671	0	.	4602511	4603093	0	1	582	0
chr1	4604177	4604634	B_Cells_Pritchard.7519	0	.	4604177	4604634	0	1	457	0
chr1	4606454	4607346	B_cells_Cheung.672	0	.	4606454	4607346	0	1	892	0
chr1	4606671	4607273	B_Cells_Pritchard.7531	0	.	4606671	4607273	0	1	602	0
chr1	4612386	4613524	brain_AmbionMAQC.332	0	.	4612386	4613524	0	1	1138	0
chr1	4744796	4745543	H9_polyA+.297	0	.	4744796	4745543	0	1	747	0
chr1	4746679	4752055	HIT000306890	0	+	4746679	4752055	0	1	5376	0
chr1	4747267	4749121	H9_polyA+.300	0	.	4747267	4749121	0	1	1854	0
chr1	4747542	4747883	prostate_normal.309	0	.	4747542	4747883	0	1	341	0
chr1	4749496	4752456	HIT000094794	0	+	4749496	4752456	0	1	2960	0
chr1	4749552	4752060	HIT000064304	0	+	4749552	4752060	0	1	2508	0
chr1	4749956	4751396	H9_polyA+.303	0	.	4749956	4751396	0	1	1440	0
chr1	4991590	4992640	B_cells_Cheung.677	0	.	4991590	4992640	0	1	1050	0
chr1	5044532	5046481	H1_polyA+.404	0	.	5044532	5046481	0	1	1949	0
chr1	5094818	5096374	H1_polyA+.412	0	.	5094818	5096374	0	1	1556	0
chr1	5122025	5122431	B_cells_Cheung.678	0	.	5122025	5122431	0	1	406	0
chr1	5408746	5420316	BT20_Thompson.225	0	-	5408746	5420316	0	3	1863,150,7385	0,3678,4185
chr1	5423470	5426074	BT20_Thompson.228	0	.	5423470	5426074	0	1	2604	0
chr1	5475624	5477406	HIT000097257	0	+	5475624	5477406	0	1	1782	0
chr1	5557355	5558052	B_Cells_Pritchard.9761	0	.	5557355	5558052	0	1	697	0
chr1	5560632	5561288	BT474_Burge_Thompson.273	0	.	5560632	5561288	0	1	656	0
chr1	5625919	5626421	B_Cells_Pritchard.9975	0	.	5625919	5626421	0	1	502	0
chr1	5834785	5836465	melanoma_Garraway_short_term_cultures.356	0	-	5834785	5836465	0	2	921,25	0,1655
chr1	5835746	5837350	REMC_LuminalBreast.419	0	.	5835746	5837350	0	1	1604	0
chr1	5837408	5838306	melanoma_Garraway_short_term_cultures.358	0	.	5837408	5838306	0	1	898	0
chr1	5837784	5838541	prostate_carcinoma.223	0	.	5837784	5838541	0	1	757	0
chr1	5839615	5841127	melanoma_Garraway_short_term_cultures.359	0	.	5839615	5841127	0	1	1512	0
chr1	5839798	5841044	HepG2_Caltech_ENCODE.242	0	.	5839798	5841044	0	1	1246	0
chr1	5840115	5841007	BT20_Thompson.207	0	.	5840115	5841007	0	1	892	0
chr1	5840341	5840708	B_Cells_Pritchard.10649	0	.	5840341	5840708	0	1	367	0
chr1	5840513	5840838	B_cells_Cheung.683	0	.	5840513	5840838	0	1	325	0
chr1	5840753	5842409	prostate_carcinoma.224	0	.	5840753	5842409	0	1	1656	0
chr1	5840901	5841295	B_cells_Cheung.684	0	.	5840901	5841295	0	1	394	0
chr1	5841276	5842102	prostate_normal.315	0	.	5841276	5842102	0	1	826	0
chr1	5841517	5842954	HepG2_Caltech_ENCODE.243	0	.	5841517	5842954	0	1	1437	0
chr1	5842108	5842689	B_Cells_Pritchard.10657	0	.	5842108	5842689	0	1	581	0
chr1	5842250	5843595	BT20_Thompson.208	0	.	5842250	5843595	0	1	1345	0
chr1	6219626	6222483	H1_polyA+.440	0	+	6219626	6222483	0	3	366,386,1616	0,483,1241
chr1	6220372	6222084	HeLa_polyA+_Chen.292	0	+	6220372	6222084	0	2	123,1217	0,495
chr1	6220390	6222051	B_Cells_Pritchard.11381	0	+	6220390	6222051	0	2	105,1184	0,477
chr1	6220417	6222091	ENST00000429480	0	+	6220417	6222091	0	2	78,1224	0,450
chr1	6220446	6222106	HIT000041012	0	+	6220446	6222106	0	2	49,1239	0,421
chr1	6220809	6222071	B_cells_Cheung.752	0	.	6220809	6222071	0	1	1262	0
chr1	6220867	6222105	H9_polyA+.370	0	.	6220867	6222105	0	1	1238	0
chr1	6220876	6222077	ZR751_Thompson.224	0	.	6220876	6222077	0	1	1201	0
chr1	6221204	6222093	MIP101.213	0	.	6221204	6222093	0	1	889	0
chr1	6221216	6222037	A549_Myers.447	0	.	6221216	6222037	0	1	821	0
chr1	6221242	6221934	MeI_Garraway.108	0	.	6221242	6221934	0	1	692	0
chr1	6221256	6222058	T47D_Burge_Thompson.208	0	.	6221256	6222058	0	1	802	0
chr1	6221353	6222052	MCF7_Burge_Thompson.310	0	.	6221353	6222052	0	1	699	0
chr1	6221526	6222057	BT474_Burge_Thompson.303	0	.	6221526	6222057	0	1	531	0
chr1	6221561	6222036	NEC_from_H9.430	0	.	6221561	6222036	0	1	475	0
chr1	6221624	6221975	H1_rRNA-depleted_UCSD_REMC.434	0	.	6221624	6221975	0	1	351	0
chr1	6221704	6222032	liver_polyA+.538	0	.	6221704	6222032	0	1	328	0
chr1	6393595	6394452	B_cells_Cheung.773	0	.	6393595	6394452	0	1	857	0
chr1	6393619	6394422	prostate_carcinoma.282	0	.	6393619	6394422	0	1	803	0
chr1	6393669	6394281	MDAMB468_Thompson.238	0	.	6393669	6394281	0	1	612	0
chr1	6690562	6691161	B_Cells_Pritchard.12349	0	.	6690562	6691161	0	1	599	0
chr1	7853995	7854311	B_Cells_Pritchard.16275	0	+	7853995	7854311	0	1	316	0
chr1	7858470	7859267	B_Cells_Pritchard.16351	0	-	7858470	7859267	0	1	797	0
chr1	7858750	7859220	ZR751_Thompson.306	0	.	7858750	7859220	0	1	470	0
chr1	7859515	7872146	B_Cells_Pritchard.16355	0	-	7859515	7872146	0	2	86,250	0,12381
chr1	7867197	7867877	BT474_Burge_Thompson.366	0	.	7867197	7867877	0	1	680	0
chr1	7867401	7869415	B_Cells_Pritchard.16439	0	+	7867401	7869415	0	1	2014	0
chr1	7870533	7871820	B_Cells_Pritchard.16451	0	+	7870533	7871820	0	1	1287	0
chr1	7874867	7875288	B_cells_Cheung.1022	0	.	7874867	7875288	0	1	421	0
chr1	7887899	7888816	B_cells_Cheung.1023	0	.	7887899	7888816	0	1	917	0
chr1	7888073	7889043	CD4_Plagnol_activated.634	0	.	7888073	7889043	0	1	970	0
chr1	7888113	7888831	B_Cells_Pritchard.16529	0	-	7888113	7888831	0	1	718	0
chr1	7892953	7894443	B_cells_Cheung.1028	0	.	7892953	7894443	0	1	1490	0
chr1	7896239	7896548	CD4_Plagnol_activated.651	0	.	7896239	7896548	0	1	309	0
chr1	7971286	7972921	REMC_BreastStem.235	0	.	7971286	7972921	0	1	1635	0
chr1	7971329	7973116	B_cells_Cheung.1074	0	.	7971329	7973116	0	1	1787	0
chr1	7971765	7973014	K562.428	0	.	7971765	7973014	0	1	1249	0
chr1	7972239	7972911	MeWo_Garraway.300	0	.	7972239	7972911	0	1	672	0
chr1	7972318	7973535	H1_polyA+.739	0	.	7972318	7973535	0	1	1217	0
chr1	7972330	7972940	melanoma_Garraway_short_term_cultures.526	0	.	7972330	7972940	0	1	610	0
chr1	7972727	7973378	HeLa_polyA+_Chen.358	0	.	7972727	7973378	0	1	651	0
chr1	7973130	7975115	REMC_BreastStem.236	0	.	7973130	7975115	0	1	1985	0
chr1	7975483	7977737	REMC_BreastStem.383	0	.	7975483	7977737	0	1	2254	0
chr1	7977910	7984300	REMC_BreastStem.384	0	.	7977910	7984300	0	1	6390	0
chr1	7979151	7979662	B_cells_Cheung.1078	0	.	7979151	7979662	0	1	511	0
chr1	7979223	7980180	H1_polyA+.741	0	.	7979223	7980180	0	1	957	0
chr1	8088869	8091247	ZR751_Thompson.320	0	.	8088869	8091247	0	1	2378	0
chr1	8088981	8092199	REMC_LuminalBreast.600	0	.	8088981	8092199	0	1	3218	0
chr1	8098201	8098987	HepG2_Caltech_ENCODE.347	0	.	8098201	8098987	0	1	786	0
chr1	8098338	8104362	prostate_carcinoma.474	0	+	8098338	8104362	0	2	313,242	0,5782
chr1	8100143	8107833	HepG2_Caltech_ENCODE.349	0	-	8100143	8107833	0	2	286,525	0,7165
chr1	8108302	8108650	prostate_normal.457	0	.	8108302	8108650	0	1	348	0
chr1	8113572	8116354	REMC_LuminalBreast.613	0	.	8113572	8116354	0	1	2782	0
chr1	8116410	8124741	REMC_LuminalBreast.602	0	.	8116410	8124741	0	1	8331	0
chr1	8124833	8127720	REMC_LuminalBreast.603	0	.	8124833	8127720	0	1	2887	0
chr1	8184311	8185902	HepG2_Caltech_ENCODE.355	0	.	8184311	8185902	0	1	1591	0
chr1	8185094	8185534	liver_polyA+.690	0	.	8185094	8185534	0	1	440	0
chr1	8191317	8197857	Rinn_00000150	0	+	8191317	8197857	0	4	203,110,55,133	0,1815,5953,6407
chr1	8191323	8191711	MDAMB468_Thompson.257	0	.	8191323	8191711	0	1	388	0
chr1	8194284	8194672	HepG2_Caltech_ENCODE.356	0	.	8194284	8194672	0	1	388	0
chr1	8200835	8203176	Rinn_00000468	0	-	8200835	8203176	0	2	345,134	0,2207
chr1	8200836	8203176	ENST00000424689	0	-	8200836	8203176	0	2	344,133	0,2207
chr1	8221444	8223459	HepG2_Caltech_ENCODE.358	0	.	8221444	8223459	0	1	2015	0
chr1	8259117	8259935	prostate_carcinoma.482	0	.	8259117	8259935	0	1	818	0
chr1	8259393	8259871	B_Cells_Pritchard.17299	0	.	8259393	8259871	0	1	478	0
chr1	8264603	8264951	A549_Myers.603	0	.	8264603	8264951	0	1	348	0
chr1	8276686	8278516	prostate_carcinoma.484	0	.	8276686	8278516	0	1	1830	0
chr1	8277028	8278377	B_cells_Cheung.1105	0	.	8277028	8278377	0	1	1349	0
chr1	8277034	8278461	B_Cells_Pritchard.17341	0	.	8277034	8278461	0	1	1427	0
chr1	8278637	8278969	liver_polyA+.698	0	.	8278637	8278969	0	1	332	0
chr1	8290403	8290984	B_Cells_Pritchard.17361	0	.	8290403	8290984	0	1	581	0
chr1	8296510	8296820	A549_Myers.605	0	.	8296510	8296820	0	1	310	0
chr1	8331886	8332362	melanoma_Garraway_short_term_cultures.536	0	.	8331886	8332362	0	1	476	0
chr1	8808456	8808915	B_Cells_Pritchard.19095	0	.	8808456	8808915	0	1	459	0
chr1	8826818	8829341	REMC_LuminalBreast.624	0	.	8826818	8829341	0	1	2523	0
chr1	8828319	8829264	REMC_MyoepithelialBreast.459	0	.	8828319	8829264	0	1	945	0
chr1	8829596	8831069	REMC_LuminalBreast.625	0	.	8829596	8831069	0	1	1473	0
chr1	8830002	8830876	B_Cells_Pritchard.19161	0	.	8830002	8830876	0	1	874	0
chr1	8833826	8835074	REMC_LuminalBreast.627	0	.	8833826	8835074	0	1	1248	0
chr1	8836254	8837665	REMC_MyoepithelialBreast.460	0	.	8836254	8837665	0	1	1411	0
chr1	8838825	8842601	REMC_MyoepithelialBreast.462	0	.	8838825	8842601	0	1	3776	0
chr1	8839403	8841596	B_cells_Cheung.1151	0	.	8839403	8841596	0	1	2193	0
chr1	8840393	8841699	melanoma_Garraway_short_term_cultures.610	0	.	8840393	8841699	0	1	1306	0
chr1	8840632	8841591	CD4_Plagnol_activated.696	0	.	8840632	8841591	0	1	959	0
chr1	8840636	8842391	B_Cells_Pritchard.26223	0	.	8840636	8842391	0	1	1755	0
chr1	8840708	8841394	H1_polyA+.3566	0	.	8840708	8841394	0	1	686	0
chr1	8863220	8863854	CD4_Plagnol_resting.1009	0	.	8863220	8863854	0	1	634	0
chr1	8863322	8863771	prostate_normal.525	0	.	8863322	8863771	0	1	449	0
chr1	8863332	8863744	prostate_carcinoma.576	0	.	8863332	8863744	0	1	412	0
chr1	8867318	8869427	REMC_LuminalBreast.638	0	.	8867318	8869427	0	1	2109	0
chr1	8872891	8873825	REMC_LuminalBreast.641	0	.	8872891	8873825	0	1	934	0
chr1	8873150	8873815	REMC_MyoepithelialBreast.491	0	.	8873150	8873815	0	1	665	0
chr1	8878477	8879392	REMC_LuminalBreast.644	0	.	8878477	8879392	0	1	915	0
chr1	8881653	8883033	CD4_Plagnol_activated.1909	0	.	8881653	8883033	0	1	1380	0
chr1	8881653	8883033	CD4_Plagnol_activated.1907	0	+	8881653	8883033	0	2	344,696	0,684
chr1	8886164	8887078	CD4_Plagnol_resting.568	0	.	8886164	8887078	0	1	914	0
chr1	8886259	8886804	CD4_Plagnol_activated.1910	0	.	8886259	8886804	0	1	545	0
chr1	8892893	8893553	CD4_Plagnol_activated.1916	0	.	8892893	8893553	0	1	660	0
chr1	8903821	8905227	CD4_Plagnol_activated.1917	0	.	8903821	8905227	0	1	1406	0
chr1	8904180	8905198	CD4_Plagnol_resting.575	0	.	8904180	8905198	0	1	1018	0
chr1	8905635	8906883	CD4_Plagnol_activated.1913	0	.	8905635	8906883	0	1	1248	0
chr1	8906968	8909649	CD4_Plagnol_resting.581	0	.	8906968	8909649	0	1	2681	0
chr1	8906991	8910124	CD4_Plagnol_activated.1918	0	.	8906991	8910124	0	1	3133	0
chr1	9114158	9115617	B_cells_Cheung.1945	0	.	9114158	9115617	0	2	475,984	0,475
chr1	9114703	9115635	B_Cells_Pritchard.19999	0	.	9114703	9115635	0	1	932	0
chr1	9119280	9126425	B_Cells_Pritchard.20013	0	-	9119280	9126425	0	3	1054,93,691	0,3012,6454
chr1	9119280	9126555	B_Cells_Pritchard.20015	0	+	9119280	9126555	0	4	173,828,427,899	0,200,2934,6376
chr1	9124070	9126384	B_cells_Cheung.1951	0	.	9124070	9126384	0	1	2314	0
chr1	9126674	9130205	B_cells_Cheung.1952	0	.	9126674	9130205	0	1	3531	0
chr1	9131828	9134286	MDAMB468_Thompson.280	0	.	9131828	9134286	0	1	2458	0
chr1	9131879	9134131	REMC_MyoepithelialBreast.498	0	.	9131879	9134131	0	1	2252	0
chr1	9132070	9134302	BT20_Thompson.288	0	.	9132070	9134302	0	1	2232	0
chr1	9132162	9134126	MIP101.438	0	.	9132162	9134126	0	1	1964	0
chr1	9132395	9133698	MeI_Garraway.161	0	.	9132395	9133698	0	1	1303	0
chr1	9132614	9133152	lymph_node_Burge.591	0	.	9132614	9133152	0	1	538	0
chr1	9132784	9133718	HME_Burge.527	0	.	9132784	9133718	0	1	934	0
chr1	9132825	9134077	K562.411	0	.	9132825	9134077	0	1	1252	0
chr1	9135680	9136075	prostate_normal.541	0	.	9135680	9136075	0	1	395	0
chr1	9136385	9137838	melanoma_Garraway_short_term_cultures.634	0	.	9136385	9137838	0	1	1453	0
chr1	9136417	9154687	prostate_carcinoma.603	0	-	9136417	9154687	0	2	417,83	0,18187
chr1	9136469	9137764	REMC_MyoepithelialBreast.499	0	.	9136469	9137764	0	1	1295	0
chr1	9138444	9171898	B_Cells_Pritchard.21275	0	-	9138444	9171898	0	18	2147,79,181,137,931,1182,96,1084,651,3247,732,695,879,4876,126,1242,877,84	0,2421,4274,4882,5032,6504,8579,8794,13792,16835,20732,21751,22639,23596,28531,28671,32472,33370
chr1	9138444	9169072	B_Cells_Pritchard.21273	0	+	9138444	9169072	0	13	620,1515,3417,91,1340,1722,608,4136,447,4296,317,1253,147	0,756,4274,8584,8794,11853,16161,17422,23319,23813,28155,28671,30481
chr1	9139336	9139841	prostate_normal.542	0	.	9139336	9139841	0	1	505	0
chr1	9142598	9145776	HepG2_Caltech_ENCODE.385	0	.	9142598	9145776	0	1	3178	0
chr1	9142669	9151974	REMC_LuminalBreast.657	0	.	9142669	9151974	0	1	9305	0
chr1	9143342	9144693	melanoma_Garraway_short_term_cultures.639	0	.	9143342	9144693	0	1	1351	0
chr1	9144162	9144526	MCF7_Burge_Thompson.376	0	.	9144162	9144526	0	1	364	0
chr1	9144432	9145176	liver_polyA+.881	0	.	9144432	9145176	0	1	744	0
chr1	9144531	9146039	REMC_BreastStem.264	0	.	9144531	9146039	0	1	1508	0
chr1	9146108	9146461	BT474_Burge_Thompson.411	0	.	9146108	9146461	0	1	353	0
chr1	9146780	9148326	REMC_BreastStem.265	0	.	9146780	9148326	0	1	1546	0
chr1	9148707	9154495	B_Cells_Pritchard.21293	0	-	9148707	9154495	0	4	165,1177,306,151	0,165,4835,5637
chr1	9148796	9149693	melanoma_Garraway_short_term_cultures.643	0	.	9148796	9149693	0	1	897	0
chr1	9148797	9149659	HepG2_Caltech_ENCODE.387	0	.	9148797	9149659	0	1	862	0
chr1	9150285	9152943	H1_polyA+.876	0	.	9150285	9152943	0	1	2658	0
chr1	9150308	9150753	prostate_carcinoma.612	0	.	9150308	9150753	0	1	445	0
chr1	9150353	9151243	melanoma_Garraway_short_term_cultures.644	0	.	9150353	9151243	0	1	890	0
chr1	9150868	9151975	REMC_BreastStem.266	0	.	9150868	9151975	0	1	1107	0
chr1	9150913	9185265	ENST00000437157	0	-	9150913	9185265	0	4	98,289,120,41	0,13739,15363,34311
chr1	9151347	9151928	melanoma_Garraway_short_term_cultures.645	0	.	9151347	9151928	0	1	581	0
chr1	9151376	9152055	HepG2_Caltech_ENCODE.388	0	.	9151376	9152055	0	1	679	0
chr1	9151661	9151962	liver_polyA+.885	0	.	9151661	9151962	0	1	301	0
chr1	9153570	9159030	REMC_LuminalBreast.659	0	.	9153570	9159030	0	1	5460	0
chr1	9154114	9155106	HepG2_Caltech_ENCODE.390	0	.	9154114	9155106	0	1	992	0
chr1	9156425	9158699	melanoma_Garraway_short_term_cultures.648	0	.	9156425	9158699	0	1	2274	0
chr1	9156493	9156806	MCF7_Burge_Thompson.360	0	.	9156493	9156806	0	1	313	0
chr1	9158280	9165277	pHIT000097169	0	-	9158280	9165277	0	2	65,625	0,6372
chr1	9159184	9161987	REMC_LuminalBreast.660	0	.	9159184	9161987	0	1	2803	0
chr1	9160347	9161684	REMC_MyoepithelialBreast.502	0	.	9160347	9161684	0	1	1337	0
chr1	9160519	9161902	HepG2_Caltech_ENCODE.392	0	.	9160519	9161902	0	1	1383	0
chr1	9161128	9164626	melanoma_Garraway_short_term_cultures.650	0	.	9161128	9164626	0	1	3498	0
chr1	9161230	9161888	liver_polyA+.893	0	.	9161230	9161888	0	1	658	0
chr1	9162260	9165719	REMC_LuminalBreast.661	0	.	9162260	9165719	0	1	3459	0
chr1	9162468	9164517	H9_polyA-_Chen.152	0	.	9162468	9164517	0	1	2049	0
chr1	9163307	9163681	H9_polyA+.502	0	.	9163307	9163681	0	1	374	0
chr1	9164328	9166869	prostate_normal.544	0	.	9164328	9166869	0	1	2541	0
chr1	9164333	9174718	MCF7_Burge_Thompson.368	0	+	9164333	9174718	0	3	629,1442,681	0,1096,9704
chr1	9164344	9165652	A549_Myers.691	0	.	9164344	9165652	0	1	1308	0
chr1	9164483	9179627	XR_041094	0	-	9164483	9179627	0	2	458,71	0,15073
chr1	9164625	9165172	H9_polyA-_Chen.151	0	.	9164625	9165172	0	1	547	0
chr1	9164625	9171896	prostate_carcinoma.598	0	-	9164625	9171896	0	3	2280,87,82	0,4725,7189
chr1	9164635	9166527	HME_Burge.531	0	+	9164635	9166527	0	2	327,249	0,1643
chr1	9164635	9165081	HME_Burge.532	0	.	9164635	9165081	0	1	446	0
chr1	9164650	9165061	BT474_Burge_Thompson.412	0	.	9164650	9165061	0	1	411	0
chr1	9164685	9166876	H9_polyA+.505	0	+	9164685	9166876	0	2	1768,277	0,1914
chr1	9165056	9165650	T47D_Burge_Thompson.291	0	.	9165056	9165650	0	1	594	0
chr1	9165358	9165668	HME_Burge.536	0	.	9165358	9165668	0	1	310	0
chr1	9165733	9166512	A549_Myers.692	0	.	9165733	9166512	0	1	779	0
chr1	9165750	9168345	T47D_Burge_Thompson.293	0	+	9165750	9168345	0	2	703,1746	0,849
chr1	9165750	9168345	T47D_Burge_Thompson.292	0	.	9165750	9168345	0	1	2595	0
chr1	9165774	9166089	HME_Burge.537	0	.	9165774	9166089	0	1	315	0
chr1	9165856	9174699	MCF10A_Thompson.233	0	+	9165856	9174699	0	2	597,661	0,8182
chr1	9165879	9174988	REMC_LuminalBreast.662	0	+	9165879	9174988	0	2	574,950	0,8159
chr1	9166159	9174842	ZR751_Thompson.334	0	+	9166159	9174842	0	2	294,804	0,7879
chr1	9167649	9168911	REMC_LuminalBreast.665	0	.	9167649	9168911	0	1	1262	0
chr1	9169081	9170494	REMC_LuminalBreast.666	0	.	9169081	9170494	0	1	1413	0
chr1	9170965	9171696	prostate_normal.548	0	.	9170965	9171696	0	1	731	0
chr1	9171977	9174824	melanoma_Garraway_short_term_cultures.655	0	.	9171977	9174824	0	1	2847	0
chr1	9172006	9174898	B_Cells_Pritchard.20077	0	+	9172006	9174898	0	2	1042,1603	0,1289
chr1	9172006	9182625	B_Cells_Pritchard.20079	0	-	9172006	9182625	0	4	2892,1504,1518,4384	0,3002,4570,6235
chr1	9172016	9174850	prostate_normal.549	0	.	9172016	9174850	0	1	2834	0
chr1	9173294	9175058	HepG2_Caltech_ENCODE.394	0	.	9173294	9175058	0	1	1764	0
chr1	9174990	9177134	B_cells_Cheung.1466	0	.	9174990	9177134	0	1	2144	0
chr1	9175007	9177749	H1_polyA+.880	0	.	9175007	9177749	0	1	2742	0
chr1	9175007	9181493	H1_polyA+.879	0	+	9175007	9181493	0	2	1300,3139	0,3347
chr1	9175038	9176484	REMC_BreastStem.270	0	.	9175038	9176484	0	1	1446	0
chr1	9175061	9176525	melanoma_Garraway_short_term_cultures.656	0	.	9175061	9176525	0	1	1464	0
chr1	9177700	9181460	B_cells_Cheung.1468	0	.	9177700	9181460	0	1	3760	0
chr1	9178224	9180618	prostate_carcinoma.617	0	.	9178224	9180618	0	1	2394	0
chr1	9178244	9181493	H1_polyA+.881	0	.	9178244	9181493	0	1	3249	0
chr1	9179994	9180752	REMC_BreastStem.268	0	.	9179994	9180752	0	1	758	0
chr1	9182087	9183415	H1_polyA+.882	0	.	9182087	9183415	0	1	1328	0
chr1	9183207	9184514	B_Cells_Pritchard.20085	0	.	9183207	9184514	0	1	1307	0
chr1	9183562	9186259	B_cells_Cheung.1472	0	+	9183562	9186259	0	2	680,1245	0,1452
chr1	9183562	9184613	B_cells_Cheung.1470	0	.	9183562	9184613	0	1	1051	0
chr1	9186299	9186632	A549_Myers.697	0	.	9186299	9186632	0	1	333	0
chr1	9214210	9215127	REMC_LuminalBreast.669	0	.	9214210	9215127	0	1	917	0
chr1	9257645	9257975	liver_polyA+.898	0	.	9257645	9257975	0	1	330	0
chr1	9257675	9258242	B_Cells_Pritchard.20297	0	.	9257675	9258242	0	1	567	0
chr1	9257687	9259049	prostate_carcinoma.785	0	.	9257687	9259049	0	1	1362	0
chr1	9261313	9261777	liver_polyA+.903	0	.	9261313	9261777	0	1	464	0
chr1	9263940	9264490	liver_polyA+.904	0	.	9263940	9264490	0	1	550	0
chr1	9264464	9264905	A549_Myers.711	0	.	9264464	9264905	0	1	441	0
chr1	9265922	9266899	liver_polyA+.1029	0	.	9265922	9266899	0	1	977	0
chr1	9353552	9358109	REMC_MyoepithelialBreast.564	0	.	9353552	9358109	0	1	4557	0
chr1	9353702	9355136	CD4_Plagnol_resting.613	0	.	9353702	9355136	0	1	1434	0
chr1	9353714	9354214	prostate_carcinoma.687	0	.	9353714	9354214	0	1	500	0
chr1	9353735	9354489	B_Cells_Pritchard.20655	0	.	9353735	9354489	0	1	754	0
chr1	9353897	9356887	melanoma_Garraway_short_term_cultures.678	0	.	9353897	9356887	0	1	2990	0
chr1	9357348	9358386	melanoma_Garraway_short_term_cultures.679	0	.	9357348	9358386	0	1	1038	0
chr1	9358190	9360488	REMC_MyoepithelialBreast.565	0	.	9358190	9360488	0	1	2298	0
chr1	9358844	9359480	CD4_Plagnol_resting.617	0	.	9358844	9359480	0	1	636	0
chr1	9359501	9362847	REMC_LuminalBreast.690	0	.	9359501	9362847	0	1	3346	0
chr1	9360130	9360568	B_cells_Cheung.1581	0	.	9360130	9360568	0	1	438	0
chr1	9361484	9362503	B_cells_Cheung.1582	0	.	9361484	9362503	0	1	1019	0
chr1	9361502	9362571	REMC_MyoepithelialBreast.566	0	.	9361502	9362571	0	1	1069	0
chr1	9362921	9364247	REMC_MyoepithelialBreast.567	0	.	9362921	9364247	0	1	1326	0
chr1	9362942	9365953	REMC_LuminalBreast.691	0	.	9362942	9365953	0	1	3011	0
chr1	9363012	9363969	B_cells_Cheung.1583	0	.	9363012	9363969	0	1	957	0
chr1	9363014	9364022	melanoma_Garraway_short_term_cultures.681	0	.	9363014	9364022	0	1	1008	0
chr1	9363096	9363567	B_Cells_Pritchard.20699	0	.	9363096	9363567	0	1	471	0
chr1	9363117	9364000	prostate_carcinoma.685	0	.	9363117	9364000	0	1	883	0
chr1	9363213	9363912	CD4_Plagnol_resting.619	0	.	9363213	9363912	0	1	699	0
chr1	9364562	9365717	REMC_MyoepithelialBreast.568	0	.	9364562	9365717	0	1	1155	0
chr1	9364703	9365887	B_cells_Cheung.1584	0	.	9364703	9365887	0	1	1184	0
chr1	9366017	9372023	REMC_LuminalBreast.692	0	.	9366017	9372023	0	1	6006	0
chr1	9366676	9367604	REMC_BreastStem.360	0	.	9366676	9367604	0	1	928	0
chr1	9367036	9367469	B_cells_Cheung.1585	0	.	9367036	9367469	0	1	433	0
chr1	9368062	9370417	REMC_MyoepithelialBreast.569	0	.	9368062	9370417	0	1	2355	0
chr1	9372225	9378689	REMC_LuminalBreast.693	0	.	9372225	9378689	0	1	6464	0
chr1	9372225	9378445	REMC_BreastStem.361	0	.	9372225	9378445	0	1	6220	0
chr1	9373722	9375025	REMC_MyoepithelialBreast.572	0	.	9373722	9375025	0	1	1303	0
chr1	9380192	9382565	REMC_BreastStem.363	0	.	9380192	9382565	0	1	2373	0
chr1	9380502	9381143	B_Cells_Pritchard.20779	0	+	9380502	9381143	0	1	641	0
chr1	9381138	9381783	B_cells_Cheung.1590	0	.	9381138	9381783	0	1	645	0
chr1	9384052	9385114	REMC_LuminalBreast.695	0	.	9384052	9385114	0	1	1062	0
chr1	9385448	9386026	B_cells_Cheung.1592	0	.	9385448	9386026	0	1	578	0
chr1	9386243	9387322	REMC_LuminalBreast.696	0	.	9386243	9387322	0	1	1079	0
chr1	9386393	9388357	B_cells_Cheung.1593	0	-	9386393	9388357	0	2	330,1335	0,629
chr1	9386393	9390601	B_cells_Cheung.1594	0	.	9386393	9390601	0	1	4208	0
chr1	9386497	9387682	CD4_Plagnol_resting.622	0	.	9386497	9387682	0	1	1185	0
chr1	9386507	9387669	CD4_Plagnol_activated.731	0	.	9386507	9387669	0	1	1162	0
chr1	9386643	9387657	B_Cells_Pritchard.20803	0	+	9386643	9387657	0	1	1014	0
chr1	9388214	9390438	REMC_LuminalBreast.697	0	.	9388214	9390438	0	1	2224	0
chr1	9391592	9392218	REMC_BreastStem.284	0	.	9391592	9392218	0	1	626	0
chr1	9396083	9396471	A549_Myers.727	0	.	9396083	9396471	0	1	388	0
chr1	9397207	9409658	Rinn_00001385	0	-	9397207	9409658	0	2	25,1350	0,11101
chr1	9398839	9401223	B_Cells_Pritchard.20863	0	+	9398839	9401223	0	2	1070,1264	0,1120
chr1	9398937	9401991	B_cells_Cheung.1576	0	.	9398937	9401991	0	1	3054	0
chr1	9399228	9399635	BT474_Burge_Thompson.418	0	.	9399228	9399635	0	1	407	0
chr1	9401671	9401985	B_Cells_Pritchard.20867	0	+	9401671	9401985	0	1	314	0
chr1	9403422	9407337	B_cells_Cheung.1597	0	.	9403422	9407337	0	1	3915	0
chr1	9404944	9406532	B_Cells_Pritchard.20871	0	.	9404944	9406532	0	1	1588	0
chr1	9405096	9405442	liver_polyA+.920	0	.	9405096	9405442	0	1	346	0
chr1	9405295	9406344	prostate_carcinoma.693	0	.	9405295	9406344	0	1	1049	0
chr1	9405516	9406089	brain_AmbionMAQC.499	0	.	9405516	9406089	0	1	573	0
chr1	9407516	9410504	B_cells_Cheung.1577	0	.	9407516	9410504	0	1	2988	0
chr1	9407626	9409665	B_Cells_Pritchard.20877	0	.	9407626	9409665	0	1	2039	0
chr1	9407729	9409592	prostate_carcinoma.694	0	.	9407729	9409592	0	1	1863	0
chr1	9407749	9409556	brain_AmbionMAQC.500	0	.	9407749	9409556	0	1	1807	0
chr1	9407752	9409589	MIP101.442	0	.	9407752	9409589	0	1	1837	0
chr1	9407838	9409610	melanoma_Garraway_short_term_cultures.684	0	.	9407838	9409610	0	1	1772	0
chr1	9407870	9409591	prostate_normal.578	0	.	9407870	9409591	0	1	1721	0
chr1	9408321	9409062	H1_polyA+.850	0	.	9408321	9409062	0	1	741	0
chr1	9408937	9411590	Rinn_00002288	0	-	9408937	9411590	0	2	1090,24	0,2629
chr1	9415145	9415664	liver_polyA+.927	0	.	9415145	9415664	0	1	519	0
chr1	9418476	9419228	MeI_Garraway.169	0	.	9418476	9419228	0	1	752	0
chr1	9426460	9427937	MeI_Garraway.174	0	-	9426460	9427937	0	2	623,349	0,1128
chr1	9432585	9433469	melanoma_Garraway_short_term_cultures.691	0	.	9432585	9433469	0	1	884	0
chr1	9435949	9436610	A549_Myers.730	0	.	9435949	9436610	0	1	661	0
chr1	9449995	9450861	REMC_LuminalBreast.698	0	.	9449995	9450861	0	1	866	0
chr1	9567287	9567948	B_cells_Cheung.1639	0	.	9567287	9567948	0	1	661	0
chr1	9567295	9567740	BT20_Thompson.299	0	.	9567295	9567740	0	1	445	0
chr1	9567297	9567685	brain_AmbionMAQC.506	0	.	9567297	9567685	0	1	388	0
chr1	9567297	9567683	MCF10A_Thompson.239	0	.	9567297	9567683	0	1	386	0
chr1	9567297	9567817	BT474_Burge_Thompson.423	0	.	9567297	9567817	0	1	520	0
chr1	9567301	9567933	CD4_Plagnol_activated.756	0	.	9567301	9567933	0	1	632	0
chr1	9567301	9567938	melanoma_Garraway_short_term_cultures.714	0	.	9567301	9567938	0	1	637	0
chr1	9567303	9567808	CD4_Plagnol_resting.634	0	.	9567303	9567808	0	1	505	0
chr1	9567305	9567633	MeWo_Garraway.358	0	.	9567305	9567633	0	1	328	0
chr1	9567309	9567819	MCF7_Burge_Thompson.382	0	.	9567309	9567819	0	1	510	0
chr1	9567319	9567817	prostate_normal.597	0	.	9567319	9567817	0	1	498	0
chr1	9567336	9567800	MDAMB468_Thompson.286	0	.	9567336	9567800	0	1	464	0
chr1	9568040	9568474	B_cells_Cheung.1640	0	.	9568040	9568474	0	1	434	0
chr1	9606735	9607476	B_cells_Cheung.1658	0	.	9606735	9607476	0	1	741	0
chr1	9608053	9609179	REMC_LuminalBreast.715	0	.	9608053	9609179	0	1	1126	0
chr1	9608256	9612306	B_Cells_Pritchard.64521	0	+	9608256	9612306	0	2	1945,1182	0,2868
chr1	9609629	9609971	A549_Myers.753	0	.	9609629	9609971	0	1	342	0
chr1	9808933	9810916	HIT000249513	0	-	9808933	9810916	0	1	1983	0
chr1	9810254	9810903	HIT000390298	0	-	9810254	9810903	0	1	649	0
chr1	9810494	9810879	XR_040220	0	-	9810494	9810879	0	1	385	0
chr1	9818561	9819441	B_Cells_Pritchard.21345	0	.	9818561	9819441	0	1	880	0
chr1	10013252	10014555	REMC_LuminalBreast.987	0	.	10013252	10014555	0	1	1303	0
chr1	10167627	10170248	REMC_LuminalBreast.992	0	.	10167627	10170248	0	1	2621	0
chr1	10167831	10168562	B_Cells_Pritchard.22107	0	.	10167831	10168562	0	1	731	0
chr1	10169015	10169879	REMC_BreastStem.369	0	.	10169015	10169879	0	1	864	0
chr1	10169068	10169804	prostate_carcinoma.832	0	.	10169068	10169804	0	1	736	0
chr1	10169469	10169871	B_cells_Cheung.1784	0	.	10169469	10169871	0	1	402	0
chr1	10169508	10169899	B_Cells_Pritchard.22113	0	.	10169508	10169899	0	1	391	0
chr1	10175744	10176342	REMC_LuminalBreast.994	0	.	10175744	10176342	0	1	598	0
chr1	10188991	10189597	REMC_LuminalBreast.1006	0	.	10188991	10189597	0	1	606	0
chr1	10366831	10367238	CD4_Plagnol_resting.760	0	.	10366831	10367238	0	1	407	0
chr1	10368871	10372828	H1_polyA+.2397	0	.	10368871	10372828	0	1	3957	0
chr1	10369411	10372702	REMC_BreastStem.373	0	.	10369411	10372702	0	1	3291	0
chr1	10369465	10369955	liver_polyA+.1266	0	.	10369465	10369955	0	1	490	0
chr1	10369469	10372653	B_Cells_Pritchard.22559	0	-	10369469	10372653	0	2	1782,829	0,2355
chr1	10371590	10373144	liver_polyA+.1269	0	-	10371590	10373144	0	3	33,521,73	0,317,1481
chr1	10371852	10372645	B_cells_Cheung.1855	0	.	10371852	10372645	0	1	793	0
chr1	10371855	10372565	brain_AmbionMAQC.802	0	.	10371855	10372565	0	1	710	0
chr1	10371859	10372629	melanoma_Garraway_short_term_cultures.823	0	.	10371859	10372629	0	1	770	0
chr1	10371862	10372526	CD4_Plagnol_resting.764	0	.	10371862	10372526	0	1	664	0
chr1	10371958	10372448	NEC_from_H9.767	0	.	10371958	10372448	0	1	490	0
chr1	10371999	10372467	H9_polyA+.580	0	.	10371999	10372467	0	1	468	0
chr1	10404390	10405347	REMC_LuminalBreast.1058	0	.	10404390	10405347	0	1	957	0
chr1	10411406	10412224	B_Cells_Pritchard.29691	0	-	10411406	10412224	0	1	818	0
chr1	10614422	10615886	REMC_BreastStem.391	0	.	10614422	10615886	0	1	1464	0
chr1	10615187	10615827	HepG2_Caltech_ENCODE.475	0	.	10615187	10615827	0	1	640	0
chr1	10615258	10615836	CD4_Plagnol_resting.818	0	.	10615258	10615836	0	1	578	0
chr1	10615467	10615855	liver_polyA+.1335	0	.	10615467	10615855	0	1	388	0
chr1	10616407	10617117	REMC_LuminalBreast.1203	0	.	10616407	10617117	0	1	710	0
chr1	10789035	10790452	prostate_carcinoma.973	0	.	10789035	10790452	0	1	1417	0
chr1	10791770	10794041	prostate_normal.755	0	.	10791770	10794041	0	1	2271	0
chr1	10794927	10798301	prostate_carcinoma.976	0	.	10794927	10798301	0	1	3374	0
chr1	10872242	10872605	B_Cells_Pritchard.24003	0	.	10872242	10872605	0	1	363	0
chr1	10886670	10887695	BT20_Thompson.331	0	.	10886670	10887695	0	1	1025	0
chr1	10987894	10988571	H1_polyA+.987	0	.	10987894	10988571	0	1	677	0
chr1	10987914	10988524	REMC_LuminalBreast.1208	0	.	10987914	10988524	0	1	610	0
chr1	10993644	10994251	B_Cells_Pritchard.36985	0	-	10993644	10994251	0	1	607	0
chr1	11034641	11035098	BT20_Thompson.345	0	.	11034641	11035098	0	1	457	0
chr1	11035501	11035895	CD4_Plagnol_resting.927	0	.	11035501	11035895	0	1	394	0
chr1	11044049	11046438	B_cells_Cheung.2276	0	.	11044049	11046438	0	1	2389	0
chr1	11044089	11045198	HeLa_polyA+_Chen.470	0	.	11044089	11045198	0	1	1109	0
chr1	11044108	11045358	B_Cells_Pritchard.37171	0	-	11044108	11045358	0	1	1250	0
chr1	11044137	11046775	REMC_MyoepithelialBreast.1029	0	.	11044137	11046775	0	1	2638	0
chr1	11044151	11046058	REMC_LuminalBreast.1245	0	.	11044151	11046058	0	1	1907	0
chr1	11044284	11045171	melanoma_Garraway_short_term_cultures.893	0	.	11044284	11045171	0	1	887	0
chr1	11045516	11046729	REMC_BreastStem.404	0	.	11045516	11046729	0	1	1213	0
chr1	11279535	11280704	H9_polyA+.651	0	.	11279535	11280704	0	1	1169	0
chr1	11281181	11282455	REMC_MyoepithelialBreast.1016	0	.	11281181	11282455	0	1	1274	0
chr1	11281202	11282195	H9_polyA+.652	0	.	11281202	11282195	0	1	993	0
chr1	11281238	11282416	H1_polyA+.1379	0	.	11281238	11282416	0	1	1178	0
chr1	11281241	11282294	prostate_carcinoma.1014	0	.	11281241	11282294	0	1	1053	0
chr1	11281241	11282421	brain_AmbionMAQC.604	0	.	11281241	11282421	0	1	1180	0
chr1	11281248	11282155	HepG2_Caltech_ENCODE.507	0	.	11281248	11282155	0	1	907	0
chr1	11281249	11282267	CD4_Plagnol_resting.912	0	.	11281249	11282267	0	1	1018	0
chr1	11281250	11282173	B_cells_Cheung.1920	0	.	11281250	11282173	0	1	923	0
chr1	11281263	11282452	CD4_Plagnol_activated.971	0	.	11281263	11282452	0	1	1189	0
chr1	11281333	11282218	REMC_BreastStem.444	0	.	11281333	11282218	0	1	885	0
chr1	11281343	11282267	BT474_Burge_Thompson.501	0	.	11281343	11282267	0	1	924	0
chr1	11281366	11282240	liver_polyA+.1403	0	.	11281366	11282240	0	1	874	0
chr1	11281492	11282256	melanoma_Garraway_short_term_cultures.908	0	.	11281492	11282256	0	1	764	0
chr1	11281575	11289962	prostate_normal.806	0	+	11281575	11289962	0	2	158,743	0,7644
chr1	11281608	11282132	MeWo_Garraway.461	0	.	11281608	11282132	0	1	524	0
chr1	11284698	11293855	prostate_normal.796	0	+	11284698	11293855	0	2	13,3263	0,5894
chr1	11289236	11290342	H1_polyA+.1385	0	.	11289236	11290342	0	1	1106	0
chr1	11289236	11290333	prostate_carcinoma.1021	0	.	11289236	11290333	0	1	1097	0
chr1	11289245	11289759	B_Cells_Pritchard.24623	0	+	11289245	11289759	0	1	514	0
chr1	11289256	11290320	MIP101.934	0	.	11289256	11290320	0	1	1064	0
chr1	11289256	11292594	REMC_MyoepithelialBreast.1009	0	.	11289256	11292594	0	1	3338	0
chr1	11289294	11290035	brain_AmbionMAQC.605	0	.	11289294	11290035	0	1	741	0
chr1	11289451	11290509	REMC_LuminalBreast.1256	0	.	11289451	11290509	0	1	1058	0
chr1	11290410	11292185	H1_polyA+.1386	0	.	11290410	11292185	0	1	1775	0
chr1	11290590	11293874	prostate_carcinoma.1020	0	.	11290590	11293874	0	1	3284	0
chr1	11290595	11292505	REMC_LuminalBreast.1257	0	.	11290595	11292505	0	1	1910	0
chr1	11291266	11292112	brain_AmbionMAQC.606	0	.	11291266	11292112	0	1	846	0
chr1	11291342	11292182	B_Cells_Pritchard.24633	0	.	11291342	11292182	0	1	840	0
chr1	11291840	11292300	B_cells_Cheung.1925	0	.	11291840	11292300	0	1	460	0
chr1	11293988	11295123	prostate_carcinoma.1023	0	.	11293988	11295123	0	1	1135	0
chr1	11298356	11299519	prostate_carcinoma.1024	0	.	11298356	11299519	0	1	1163	0
chr1	11298377	11299520	prostate_normal.809	0	.	11298377	11299520	0	1	1143	0
chr1	11302631	11303075	A549_Myers.905	0	.	11302631	11303075	0	1	444	0
chr1	11315760	11316137	B_Cells_Pritchard.24739	0	+	11315760	11316137	0	1	377	0
chr1	11317056	11317775	ZR751_Thompson.410	0	.	11317056	11317775	0	1	719	0
chr1	11317225	11317781	BT474_Burge_Thompson.503	0	.	11317225	11317781	0	1	556	0
chr1	11317261	11317573	B_Cells_Pritchard.24749	0	+	11317261	11317573	0	1	312	0
chr1	11340622	11347174	Rinn_00000838	0	+	11340622	11347174	0	4	122,145,58,396	0,4602,5803,6156
chr1	11355347	11361331	Rinn_00000839	0	+	11355347	11361331	0	3	376,148,1402	0,3190,4582
chr1	11355412	11358077	H1_polyA+.1387	0	.	11355412	11358077	0	1	2665	0
chr1	11355422	11357345	B_Cells_Pritchard.24889	0	+	11355422	11357345	0	1	1923	0
chr1	11355820	11357016	B_cells_Cheung.1926	0	.	11355820	11357016	0	1	1196	0
chr1	11355881	11357102	brain_AmbionMAQC.607	0	.	11355881	11357102	0	1	1221	0
chr1	11355886	11357228	BT474_Burge_Thompson.504	0	.	11355886	11357228	0	1	1342	0
chr1	11356051	11357246	prostate_carcinoma.1025	0	+	11356051	11357246	0	2	639,411	0,784
chr1	11356130	11357355	prostate_normal.784	0	+	11356130	11357355	0	2	560,520	0,705
chr1	11356160	11357146	ZR751_Thompson.411	0	.	11356160	11357146	0	1	986	0
chr1	11356434	11357671	REMC_MyoepithelialBreast.1010	0	.	11356434	11357671	0	1	1237	0
chr1	11356694	11357355	prostate_normal.785	0	.	11356694	11357355	0	1	661	0
chr1	11356769	11357246	prostate_carcinoma.1026	0	.	11356769	11357246	0	1	477	0
chr1	11357923	11358828	MIP101.666	0	.	11357923	11358828	0	1	905	0
chr1	11361740	11362850	H1_polyA+.1389	0	.	11361740	11362850	0	1	1110	0
chr1	11361810	11362124	B_cells_Cheung.1928	0	.	11361810	11362124	0	1	314	0
chr1	11366188	11368600	H1_polyA+.1390	0	.	11366188	11368600	0	1	2412	0
chr1	11411332	11411641	ZR751_Thompson.414	0	.	11411332	11411641	0	1	309	0
chr1	11712312	11713278	REMC_MyoepithelialBreast.1115	0	.	11712312	11713278	0	1	966	0
chr1	11832922	11834100	B_cells_Cheung.1986	0	.	11832922	11834100	0	1	1178	0
chr1	11869916	11870366	BT474_Burge_Thompson.552	0	.	11869916	11870366	0	1	450	0
chr1	11873719	11875594	HepG2_Caltech_ENCODE.545	0	+	11873719	11875594	0	2	241,893	0,982
chr1	11877275	11878186	HepG2_Caltech_ENCODE.547	0	.	11877275	11878186	0	1	911	0
chr1	11891884	11892439	CD4_Plagnol_resting.974	0	.	11891884	11892439	0	1	555	0
chr1	11960939	11961606	REMC_LuminalBreast.1356	0	.	11960939	11961606	0	1	667	0
chr1	11960939	11961697	HepG2_Caltech_ENCODE.561	0	.	11960939	11961697	0	1	758	0
chr1	11961029	11961789	melanoma_Garraway_short_term_cultures.957	0	.	11961029	11961789	0	1	760	0
chr1	12016929	12017556	B_cells_Cheung.2087	0	.	12016929	12017556	0	1	627	0
chr1	12017717	12018753	B_cells_Cheung.2088	0	.	12017717	12018753	0	1	1036	0
chr1	12021911	12022432	B_cells_Cheung.2092	0	.	12021911	12022432	0	1	521	0
chr1	12028980	12029336	B_cells_Cheung.2096	0	.	12028980	12029336	0	1	356	0
chr1	12029388	12031496	B_cells_Cheung.2097	0	.	12029388	12031496	0	1	2108	0
chr1	12041793	12043453	B_cells_Cheung.2723	0	.	12041793	12043453	0	1	1660	0
chr1	12130626	12136512	B_Cells_Pritchard.26745	0	.	12130626	12136512	0	1	5886	0
chr1	12130627	12135877	B_cells_Cheung.2114	0	.	12130627	12135877	0	1	5250	0
chr1	12133428	12134656	H1_polyA+.1517	0	.	12133428	12134656	0	1	1228	0
chr1	12137418	12138586	B_cells_Cheung.2117	0	.	12137418	12138586	0	1	1168	0
chr1	12137432	12138594	B_Cells_Pritchard.26749	0	.	12137432	12138594	0	1	1162	0
chr1	12141184	12141817	B_cells_Cheung.2120	0	.	12141184	12141817	0	1	633	0
chr1	12143648	12144156	B_Cells_Pritchard.26765	0	.	12143648	12144156	0	1	508	0
chr1	12144727	12145220	B_cells_Cheung.2124	0	.	12144727	12145220	0	1	493	0
chr1	12145482	12146263	B_Cells_Pritchard.26791	0	-	12145482	12146263	0	2	329,173	0,608
chr1	12145724	12146324	B_cells_Cheung.2125	0	.	12145724	12146324	0	1	600	0
chr1	12146385	12147150	B_cells_Cheung.2126	0	.	12146385	12147150	0	1	765	0
chr1	12146386	12147015	B_Cells_Pritchard.26797	0	-	12146386	12147015	0	1	629	0
chr1	12147252	12148154	B_Cells_Pritchard.26799	0	-	12147252	12148154	0	2	212,639	0,263
chr1	12147334	12147990	CD4_Plagnol_activated.1069	0	.	12147334	12147990	0	1	656	0
chr1	12147516	12148240	B_cells_Cheung.2127	0	.	12147516	12148240	0	1	724	0
chr1	12193145	12194102	B_cells_Cheung.2135	0	.	12193145	12194102	0	1	957	0
chr1	12195911	12197479	REMC_LuminalBreast.1402	0	.	12195911	12197479	0	1	1568	0
chr1	12196907	12197768	REMC_BreastStem.495	0	.	12196907	12197768	0	1	861	0
chr1	12496992	12497721	melanoma_Garraway_short_term_cultures.1001	0	.	12496992	12497721	0	1	729	0
chr1	12501254	12503311	REMC_LuminalBreast.1403	0	.	12501254	12503311	0	1	2057	0
chr1	12501907	12502552	A549_Myers.1006	0	.	12501907	12502552	0	1	645	0
chr1	12501947	12503290	CD4_Plagnol_resting.1012	0	.	12501947	12503290	0	1	1343	0
chr1	12501983	12502843	prostate_normal.895	0	.	12501983	12502843	0	1	860	0
chr1	12502255	12502893	CD4_Plagnol_activated.1081	0	.	12502255	12502893	0	1	638	0
chr1	12502390	12503017	REMC_BreastStem.500	0	.	12502390	12503017	0	1	627	0
chr1	12502410	12503333	REMC_MyoepithelialBreast.1070	0	.	12502410	12503333	0	1	923	0
chr1	12506074	12507357	REMC_LuminalBreast.1405	0	.	12506074	12507357	0	1	1283	0
chr1	12510071	12511289	Rinn_00000840	0	+	12510071	12511289	0	2	350,612	0,606
chr1	12510217	12510662	A549_Myers.1007	0	.	12510217	12510662	0	1	445	0
chr1	12510351	12511049	Rinn_00000154	0	+	12510351	12511049	0	2	70,370	0,328
chr1	12510352	12511049	ENST00000416696	0	+	12510352	12511049	0	2	69,369	0,328
chr1	12513652	12521229	liver_polyA+.1550	0	+	12513652	12521229	0	2	57,1378	0,6199
chr1	12513805	12516747	REMC_LuminalBreast.1407	0	.	12513805	12516747	0	1	2942	0
chr1	12519771	12520793	REMC_LuminalBreast.1409	0	.	12519771	12520793	0	1	1022	0
chr1	12519816	12521229	liver_polyA+.1551	0	.	12519816	12521229	0	1	1413	0
chr1	12519978	12520702	HepG2_Caltech_ENCODE.576	0	.	12519978	12520702	0	1	724	0
chr1	12520257	12521164	prostate_carcinoma.1191	0	.	12520257	12521164	0	1	907	0
chr1	12520390	12520889	kidney_Gilad.978	0	.	12520390	12520889	0	1	499	0
chr1	12520991	12523950	REMC_LuminalBreast.1410	0	.	12520991	12523950	0	1	2959	0
chr1	12522852	12526115	liver_polyA+.1548	0	.	12522852	12526115	0	1	3263	0
chr1	12523142	12524009	REMC_MyoepithelialBreast.1073	0	.	12523142	12524009	0	1	867	0
chr1	12523684	12524481	melanoma_Garraway_short_term_cultures.1004	0	.	12523684	12524481	0	1	797	0
chr1	12524004	12525261	REMC_LuminalBreast.1411	0	.	12524004	12525261	0	1	1257	0
chr1	12524573	12525202	prostate_normal.896	0	.	12524573	12525202	0	1	629	0
chr1	12534299	12535567	HepG2_Caltech_ENCODE.578	0	.	12534299	12535567	0	1	1268	0
chr1	12601767	12602121	lymph_node_Burge.886	0	.	12601767	12602121	0	1	354	0
chr1	12601877	12602487	H1_rRNA-depleted_UCSD_REMC.1074	0	.	12601877	12602487	0	1	610	0
chr1	12604033	12606361	prostate_normal.1037	0	.	12604033	12606361	0	1	2328	0
chr1	12604054	12604379	HepG2_Caltech_ENCODE.587	0	.	12604054	12604379	0	1	325	0
chr1	12608451	12610278	H1_polyA+.1566	0	.	12608451	12610278	0	1	1827	0
chr1	12688904	12690524	H1_polyA+.1571	0	.	12688904	12690524	0	1	1620	0
chr1	12690625	12696297	H1_polyA+.1572	0	.	12690625	12696297	0	1	5672	0
chr1	12719205	12720519	H1_polyA+.1580	0	.	12719205	12720519	0	1	1314	0
chr1	13819664	13820797	REMC_MyoepithelialBreast.1123	0	.	13819664	13820797	0	1	1133	0
chr1	13819674	13820830	H1_polyA+.1734	0	.	13819674	13820830	0	1	1156	0
chr1	13821258	13822154	H1_polyA+.1735	0	.	13821258	13822154	0	1	896	0
chr1	13827377	13828235	H1_polyA+.1737	0	.	13827377	13828235	0	1	858	0
chr1	13833824	13834246	H1_polyA+.1740	0	.	13833824	13834246	0	1	422	0
chr1	13833890	13834988	REMC_MyoepithelialBreast.1128	0	.	13833890	13834988	0	1	1098	0
chr1	13837228	13839555	REMC_MyoepithelialBreast.1129	0	.	13837228	13839555	0	1	2327	0
chr1	13837482	13838013	H1_polyA+.1742	0	.	13837482	13838013	0	1	531	0
chr1	13839845	13841863	REMC_MyoepithelialBreast.1130	0	.	13839845	13841863	0	1	2018	0
chr1	13842685	13843399	REMC_MyoepithelialBreast.1131	0	.	13842685	13843399	0	1	714	0
chr1	13842858	13844271	H1_polyA+.1744	0	.	13842858	13844271	0	1	1413	0
chr1	13845497	13846350	H1_polyA+.1746	0	.	13845497	13846350	0	1	853	0
chr1	13860693	13861075	prostate_carcinoma.1209	0	.	13860693	13861075	0	1	382	0
chr1	14027423	14027912	B_Cells_Pritchard.29757	0	.	14027423	14027912	0	1	489	0
chr1	14027462	14028984	BT474_Burge_Thompson.570	0	.	14027462	14028984	0	1	1522	0
chr1	14027862	14028500	prostate_carcinoma.1220	0	.	14027862	14028500	0	1	638	0
chr1	14028067	14028475	B_Cells_Pritchard.29759	0	.	14028067	14028475	0	1	408	0
chr1	14028223	14029516	REMC_BreastStem.1566	0	.	14028223	14029516	0	1	1293	0
chr1	14033373	14035550	REMC_MyoepithelialBreast.1145	0	.	14033373	14035550	0	1	2177	0
chr1	14034120	14034936	B_Cells_Pritchard.29781	0	.	14034120	14034936	0	1	816	0
chr1	14066574	14067966	REMC_LuminalBreast.1447	0	.	14066574	14067966	0	1	1392	0
chr1	14077478	14078388	REMC_BreastStem.520	0	.	14077478	14078388	0	1	910	0
chr1	14084087	14086570	REMC_MyoepithelialBreast.1150	0	.	14084087	14086570	0	1	2483	0
chr1	14392371	14394178	prostate_carcinoma.1236	0	.	14392371	14394178	0	1	1807	0
chr1	14475290	14476339	REMC_LuminalBreast.1461	0	.	14475290	14476339	0	1	1049	0
chr1	14475312	14476351	REMC_MyoepithelialBreast.1176	0	.	14475312	14476351	0	1	1039	0
chr1	14509041	14509400	breast_Burge.728	0	.	14509041	14509400	0	1	359	0
chr1	14518551	14527849	HIT000306978	0	+	14518551	14527849	0	1	9298	0
chr1	14527844	14528816	REMC_BreastStem.525	0	.	14527844	14528816	0	1	972	0
chr1	14557164	14557902	K562.671	0	.	14557164	14557902	0	1	738	0
chr1	14566257	14574662	K562.677	0	.	14566257	14574662	0	1	8405	0
chr1	14576113	14577911	K562.679	0	.	14576113	14577911	0	1	1798	0
chr1	14584242	14584753	K562.686	0	.	14584242	14584753	0	1	511	0
chr1	14585563	14588064	K562.687	0	.	14585563	14588064	0	1	2501	0
chr1	14589302	14619056	K562.688	0	-	14589302	14619056	0	3	1359,46,480	0,19186,29274
chr1	14614091	14615656	prostate_carcinoma.1260	0	.	14614091	14615656	0	1	1565	0
chr1	14614428	14615192	B_Cells_Pritchard.31953	0	.	14614428	14615192	0	1	764	0
chr1	14617263	14618791	REMC_MyoepithelialBreast.1180	0	.	14617263	14618791	0	1	1528	0
chr1	14690635	14692707	prostate_carcinoma.1265	0	.	14690635	14692707	0	1	2072	0
chr1	14718619	14719258	prostate_carcinoma.1269	0	.	14718619	14719258	0	1	639	0
chr1	14727440	14731535	prostate_carcinoma.1274	0	+	14727440	14731535	0	3	289,131,1499	0,2201,2596
chr1	14727868	14735733	B_Cells_Pritchard.32329	0	-	14727868	14735733	0	2	408,14	0,7851
chr1	15325366	15340454	prostate_carcinoma.1381	0	-	15325366	15340454	0	2	158,1716	0,13372
chr1	15330093	15331059	REMC_MyoepithelialBreast.1514	0	.	15330093	15331059	0	1	966	0
chr1	15336417	15337528	brain_AmbionMAQC.827	0	.	15336417	15337528	0	1	1111	0
chr1	15336432	15337416	HepG2_Caltech_ENCODE.615	0	.	15336432	15337416	0	1	984	0
chr1	15336788	15337611	prostate_carcinoma.1383	0	.	15336788	15337611	0	1	823	0
chr1	15336899	15337579	prostate_normal.949	0	.	15336899	15337579	0	1	680	0
chr1	15336918	15337694	MIP101.834	0	.	15336918	15337694	0	1	776	0
chr1	15336936	15337429	melanoma_Garraway_short_term_cultures.1063	0	.	15336936	15337429	0	1	493	0
chr1	15338622	15339539	REMC_MyoepithelialBreast.1516	0	.	15338622	15339539	0	1	917	0
chr1	15338624	15339844	H1_polyA+.1804	0	.	15338624	15339844	0	1	1220	0
chr1	15338934	15339856	brain_AmbionMAQC.828	0	.	15338934	15339856	0	1	922	0
chr1	15339948	15340496	brain_AmbionMAQC.829	0	.	15339948	15340496	0	1	548	0
chr1	15340841	15343195	REMC_MyoepithelialBreast.1518	0	.	15340841	15343195	0	1	2354	0
chr1	15346769	15347889	prostate_carcinoma.1387	0	.	15346769	15347889	0	1	1120	0
chr1	15346785	15347919	MIP101.836	0	.	15346785	15347919	0	1	1134	0
chr1	15346936	15347919	melanoma_Garraway_short_term_cultures.1065	0	.	15346936	15347919	0	1	983	0
chr1	15347353	15348459	REMC_MyoepithelialBreast.1521	0	.	15347353	15348459	0	1	1106	0
chr1	15348119	15348524	prostate_carcinoma.1389	0	.	15348119	15348524	0	1	405	0
chr1	15348655	15349409	REMC_MyoepithelialBreast.1522	0	.	15348655	15349409	0	1	754	0
chr1	15348720	15350067	MIP101.837	0	.	15348720	15350067	0	1	1347	0
chr1	15421908	15424153	REMC_MyoepithelialBreast.1536	0	.	15421908	15424153	0	1	2245	0
chr1	15423013	15423964	melanoma_Garraway_short_term_cultures.1094	0	.	15423013	15423964	0	1	951	0
chr1	15424296	15427108	REMC_MyoepithelialBreast.1306	0	.	15424296	15427108	0	1	2812	0
chr1	15424468	15425180	B_cells_Cheung.2701	0	.	15424468	15425180	0	1	712	0
chr1	15424624	15427021	melanoma_Garraway_short_term_cultures.1095	0	.	15424624	15427021	0	1	2397	0
chr1	15425032	15427028	H1_polyA+.1752	0	.	15425032	15427028	0	1	1996	0
chr1	15425382	15426680	REMC_BreastStem.544	0	.	15425382	15426680	0	1	1298	0
chr1	15425437	15426768	MeWo_Garraway.545	0	.	15425437	15426768	0	1	1331	0
chr1	15425904	15426492	B_Cells_Pritchard.34765	0	.	15425904	15426492	0	1	588	0
chr1	15428090	15434637	REMC_LuminalBreast.1662	0	.	15428090	15434637	0	1	6547	0
chr1	15429278	15431167	REMC_MyoepithelialBreast.1308	0	.	15429278	15431167	0	1	1889	0
chr1	15440060	15440644	REMC_MyoepithelialBreast.1315	0	.	15440060	15440644	0	1	584	0
chr1	15440095	15441215	REMC_LuminalBreast.1665	0	.	15440095	15441215	0	1	1120	0
chr1	15441319	15443896	REMC_LuminalBreast.1666	0	.	15441319	15443896	0	1	2577	0
chr1	15602757	15605605	REMC_LuminalBreast.1512	0	.	15602757	15605605	0	1	2848	0
chr1	15602854	15603261	B_cells_Cheung.2720	0	.	15602854	15603261	0	1	407	0
chr1	15602889	15603940	H1_polyA+.1759	0	.	15602889	15603940	0	1	1051	0
chr1	15604278	15605385	REMC_MyoepithelialBreast.1325	0	.	15604278	15605385	0	1	1107	0
chr1	15604470	15605453	prostate_carcinoma.1449	0	.	15604470	15605453	0	1	983	0
chr1	15631295	15632239	CD4_Plagnol_resting.1051	0	.	15631295	15632239	0	1	944	0
chr1	15631313	15631816	prostate_carcinoma.1459	0	.	15631313	15631816	0	1	503	0
chr1	15633924	15635256	B_Cells_Pritchard.35389	0	.	15633924	15635256	0	1	1332	0
chr1	15633927	15635186	melanoma_Garraway_short_term_cultures.1112	0	.	15633927	15635186	0	1	1259	0
chr1	15633934	15635440	CD4_Plagnol_activated.1200	0	.	15633934	15635440	0	1	1506	0
chr1	15633974	15635221	prostate_carcinoma.1460	0	.	15633974	15635221	0	1	1247	0
chr1	15634308	15634665	B_cells_Cheung.2738	0	.	15634308	15634665	0	1	357	0
chr1	15634409	15634868	prostate_normal.994	0	.	15634409	15634868	0	1	459	0
chr1	15635756	15636482	MIP101.873	0	.	15635756	15636482	0	1	726	0
chr1	15801947	15802667	REMC_MyoepithelialBreast.1416	0	.	15801947	15802667	0	1	720	0
chr1	15801948	15802604	REMC_LuminalBreast.1553	0	.	15801948	15802604	0	1	656	0
chr1	15801951	15802685	REMC_BreastStem.596	0	.	15801951	15802685	0	1	734	0
chr1	15802122	15802682	B_cells_Cheung.2786	0	.	15802122	15802682	0	1	560	0
chr1	15802124	15802634	prostate_normal.1014	0	.	15802124	15802634	0	1	510	0
chr1	15802250	15803041	A549_Myers.1130	0	.	15802250	15803041	0	1	791	0
chr1	15948393	15951034	REMC_BreastStem.1042	0	.	15948393	15951034	0	1	2641	0
chr1	15948508	15949286	REMC_MyoepithelialBreast.1424	0	.	15948508	15949286	0	1	778	0
chr1	15949125	15949639	prostate_carcinoma.1972	0	.	15949125	15949639	0	1	514	0
chr1	15954089	15955208	REMC_MyoepithelialBreast.1425	0	.	15954089	15955208	0	1	1119	0
chr1	15954238	15955208	REMC_BreastStem.1044	0	.	15954238	15955208	0	1	970	0
chr1	15992818	15994778	REMC_MyoepithelialBreast.1436	0	.	15992818	15994778	0	1	1960	0
chr1	15992864	15993672	REMC_BreastStem.636	0	.	15992864	15993672	0	1	808	0
chr1	15996691	15999570	REMC_LuminalBreast.2031	0	.	15996691	15999570	0	1	2879	0
chr1	15997952	15999839	REMC_MyoepithelialBreast.1440	0	.	15997952	15999839	0	1	1887	0
chr1	15998076	15998687	REMC_BreastStem.637	0	.	15998076	15998687	0	1	611	0
chr1	16014229	16018347	REMC_LuminalBreast.2037	0	.	16014229	16018347	0	1	4118	0
chr1	16014549	16016128	B_cells_Cheung.2817	0	.	16014549	16016128	0	1	1579	0
chr1	16023221	16023599	H1_polyA+.2095	0	.	16023221	16023599	0	1	378	0
chr1	16024395	16025495	REMC_LuminalBreast.2041	0	.	16024395	16025495	0	1	1100	0
chr1	16025723	16026631	B_cells_Cheung.2824	0	.	16025723	16026631	0	1	908	0
chr1	16032310	16034010	REMC_BreastStem.641	0	.	16032310	16034010	0	1	1700	0
chr1	16033108	16034128	melanoma_Garraway_short_term_cultures.1170	0	.	16033108	16034128	0	1	1020	0
chr1	16033161	16034188	skeletal_muscle_Burge.559	0	.	16033161	16034188	0	1	1027	0
chr1	16033167	16033979	MDAMB231_Thompson.398	0	.	16033167	16033979	0	1	812	0
chr1	16033167	16034202	MDAMB468_Thompson.428	0	.	16033167	16034202	0	1	1035	0
chr1	16033169	16033945	NEC_from_H9.1134	0	.	16033169	16033945	0	1	776	0
chr1	16033216	16034143	MeWo_Garraway.587	0	.	16033216	16034143	0	1	927	0
chr1	16033254	16033854	kidney_Gilad.1144	0	.	16033254	16033854	0	1	600	0
chr1	16033261	16033986	H1_polyA+.2097	0	.	16033261	16033986	0	1	725	0
chr1	16033295	16033954	T47D_Burge_Thompson.542	0	.	16033295	16033954	0	1	659	0
chr1	16033423	16034190	lymph_node_Burge.975	0	.	16033423	16034190	0	1	767	0
chr1	16033426	16034004	H1_rRNA-depleted_UCSD_REMC.1237	0	.	16033426	16034004	0	1	578	0
chr1	16033440	16033916	breast_Burge.790	0	.	16033440	16033916	0	1	476	0
chr1	16033618	16034367	MB435_Burge.919	0	.	16033618	16034367	0	1	749	0
chr1	16035190	16035646	K562.733	0	.	16035190	16035646	0	1	456	0
chr1	16040016	16040682	REMC_MyoepithelialBreast.2039	0	.	16040016	16040682	0	1	666	0
chr1	16042617	16043625	REMC_MyoepithelialBreast.2041	0	.	16042617	16043625	0	1	1008	0
chr1	16042731	16043682	B_cells_Cheung.2839	0	.	16042731	16043682	0	1	951	0
chr1	16042750	16043632	REMC_LuminalBreast.2046	0	.	16042750	16043632	0	1	882	0
chr1	16207926	16209274	prostate_carcinoma.1466	0	.	16207926	16209274	0	1	1348	0
chr1	16208767	16209784	brain_AmbionMAQC.809	0	.	16208767	16209784	0	1	1017	0
chr1	16274926	16275261	A549_Myers.1195	0	.	16274926	16275261	0	1	335	0
chr1	16275325	16276036	A549_Myers.1196	0	.	16275325	16276036	0	1	711	0
chr1	16282122	16282441	B_Cells_Pritchard.36397	0	.	16282122	16282441	0	1	319	0
chr1	16308970	16315211	REMC_LuminalBreast.2389	0	.	16308970	16315211	0	1	6241	0
chr1	16310405	16311715	REMC_MyoepithelialBreast.1542	0	.	16310405	16311715	0	1	1310	0
chr1	16313933	16314308	B_Cells_Pritchard.36497	0	.	16313933	16314308	0	1	375	0
chr1	16314654	16315165	testes_Burge.1124	0	.	16314654	16315165	0	1	511	0
chr1	16317757	16319094	REMC_MyoepithelialBreast.1544	0	.	16317757	16319094	0	1	1337	0
chr1	16320893	16321956	REMC_BreastStem.677	0	.	16320893	16321956	0	1	1063	0
chr1	16356716	16357578	B_cells_Cheung.2895	0	.	16356716	16357578	0	1	862	0
chr1	16356742	16357608	HeLa_polyA+_Chen.553	0	.	16356742	16357608	0	1	866	0
chr1	16357248	16357603	prostate_normal.1051	0	.	16357248	16357603	0	1	355	0
chr1	16357251	16357569	liver_polyA+.1849	0	.	16357251	16357569	0	1	318	0
chr1	16357742	16358848	MIP101.1197	0	.	16357742	16358848	0	1	1106	0
chr1	16357859	16359059	H1_polyA+.1933	0	.	16357859	16359059	0	1	1200	0
chr1	16357969	16358288	A549_Myers.1202	0	.	16357969	16358288	0	1	319	0
chr1	16360299	16361898	HepG2_Caltech_ENCODE.689	0	.	16360299	16361898	0	1	1599	0
chr1	16360333	16362524	BT20_Thompson.494	0	.	16360333	16362524	0	1	2191	0
chr1	16360417	16361321	MCF7_Burge_Thompson.570	0	.	16360417	16361321	0	1	904	0
chr1	16360425	16361816	H1_polyA+.1934	0	.	16360425	16361816	0	1	1391	0
chr1	16360475	16361507	HeLa_polyA+_Chen.555	0	.	16360475	16361507	0	1	1032	0
chr1	16360483	16361527	prostate_carcinoma.1488	0	.	16360483	16361527	0	1	1044	0
chr1	16360509	16361106	B_cells_Cheung.2897	0	.	16360509	16361106	0	1	597	0
chr1	16360574	16361094	prostate_normal.1053	0	.	16360574	16361094	0	1	520	0
chr1	16360599	16362281	MDAMB231_Thompson.593	0	.	16360599	16362281	0	1	1682	0
chr1	16361458	16362131	B_Cells_Pritchard.36669	0	.	16361458	16362131	0	1	673	0
chr1	16361458	16361885	HME_Burge.941	0	.	16361458	16361885	0	1	427	0
chr1	16362224	16362885	H1_polyA+.1935	0	.	16362224	16362885	0	1	661	0
chr1	16362290	16363103	REMC_BreastStem.694	0	.	16362290	16363103	0	1	813	0
chr1	16363154	16365243	BT20_Thompson.495	0	.	16363154	16365243	0	1	2089	0
chr1	16363173	16364102	H1_polyA+.1936	0	.	16363173	16364102	0	1	929	0
chr1	16363191	16365859	HepG2_Caltech_ENCODE.690	0	.	16363191	16365859	0	1	2668	0
chr1	16363201	16365881	prostate_carcinoma.1490	0	.	16363201	16365881	0	1	2680	0
chr1	16363202	16364338	REMC_BreastStem.695	0	.	16363202	16364338	0	1	1136	0
chr1	16363743	16364161	B_Cells_Pritchard.36677	0	.	16363743	16364161	0	1	418	0
chr1	16363827	16364607	HeLa_polyA+_Chen.557	0	.	16363827	16364607	0	1	780	0
chr1	16364677	16365217	B_Cells_Pritchard.36681	0	.	16364677	16365217	0	1	540	0
chr1	16364713	16365226	prostate_normal.1055	0	.	16364713	16365226	0	1	513	0
chr1	16364742	16365115	HeLa_polyA+_Chen.558	0	.	16364742	16365115	0	1	373	0
chr1	16365276	16365806	HeLa_polyA+_Chen.559	0	.	16365276	16365806	0	1	530	0
chr1	16366249	16366864	REMC_LuminalBreast.2689	0	.	16366249	16366864	0	1	615	0
chr1	16366323	16366886	H1_polyA+.1939	0	.	16366323	16366886	0	1	563	0
chr1	16366585	16367128	B_Cells_Pritchard.36687	0	.	16366585	16367128	0	1	543	0
chr1	16372048	16374557	REMC_MyoepithelialBreast.1693	0	.	16372048	16374557	0	1	2509	0
chr1	16372481	16372963	A549_Myers.1206	0	.	16372481	16372963	0	1	482	0
chr1	16373556	16373914	A549_Myers.1207	0	.	16373556	16373914	0	1	358	0
chr1	16375066	16377298	REMC_MyoepithelialBreast.1694	0	.	16375066	16377298	0	1	2232	0
chr1	16376299	16377148	REMC_BreastStem.697	0	.	16376299	16377148	0	1	849	0
chr1	16376396	16377112	HeLa_polyA+_Chen.562	0	.	16376396	16377112	0	1	716	0
chr1	16379688	16380447	HeLa_polyA+_Chen.563	0	.	16379688	16380447	0	1	759	0
chr1	16380666	16381322	MIP101.1201	0	.	16380666	16381322	0	1	656	0
chr1	16380799	16381257	HeLa_polyA+_Chen.564	0	.	16380799	16381257	0	1	458	0
chr1	16381508	16383763	MDAMB468_Thompson.435	0	.	16381508	16383763	0	1	2255	0
chr1	16382062	16382772	B_Cells_Pritchard.36757	0	.	16382062	16382772	0	1	710	0
chr1	16382227	16382728	HeLa_polyA+_Chen.566	0	.	16382227	16382728	0	1	501	0
chr1	16382227	16382847	MIP101.1203	0	.	16382227	16382847	0	1	620	0
chr1	16382286	16384142	BT20_Thompson.433	0	.	16382286	16384142	0	1	1856	0
chr1	16382829	16384311	HeLa_polyA+_Chen.567	0	.	16382829	16384311	0	1	1482	0
chr1	16382964	16384456	MIP101.1205	0	.	16382964	16384456	0	1	1492	0
chr1	16383552	16383978	A549_Myers.1210	0	.	16383552	16383978	0	1	426	0
chr1	16389727	16390242	REMC_LuminalBreast.2690	0	.	16389727	16390242	0	1	515	0
chr1	16390529	16391086	B_Cells_Pritchard.36791	0	.	16390529	16391086	0	1	557	0
chr1	16390534	16391609	REMC_LuminalBreast.2691	0	.	16390534	16391609	0	1	1075	0
chr1	16391949	16392398	REMC_LuminalBreast.2692	0	.	16391949	16392398	0	1	449	0
chr1	16392535	16393743	REMC_LuminalBreast.2693	0	.	16392535	16393743	0	1	1208	0
chr1	16416785	16419074	REMC_LuminalBreast.1673	0	.	16416785	16419074	0	1	2289	0
chr1	16417165	16418154	REMC_MyoepithelialBreast.1570	0	.	16417165	16418154	0	1	989	0
chr1	16419131	16421857	REMC_LuminalBreast.1674	0	.	16419131	16421857	0	1	2726	0
chr1	16419709	16421683	REMC_MyoepithelialBreast.1571	0	.	16419709	16421683	0	1	1974	0
chr1	16420092	16421375	REMC_BreastStem.683	0	.	16420092	16421375	0	1	1283	0
chr1	16420092	16421378	melanoma_Garraway_short_term_cultures.1205	0	.	16420092	16421378	0	1	1286	0
chr1	16420216	16421376	prostate_carcinoma.1576	0	.	16420216	16421376	0	1	1160	0
chr1	16420420	16421480	H1_polyA+.1943	0	.	16420420	16421480	0	1	1060	0
chr1	16420451	16421377	MIP101.1210	0	.	16420451	16421377	0	1	926	0
chr1	16420485	16421834	K562.780	0	.	16420485	16421834	0	1	1349	0
chr1	16420575	16421195	BT474_Burge_Thompson.628	0	.	16420575	16421195	0	1	620	0
chr1	16420595	16421022	B_cells_Cheung.2908	0	.	16420595	16421022	0	1	427	0
chr1	16420598	16421063	HeLa_polyA+_Chen.569	0	.	16420598	16421063	0	1	465	0
chr1	16420626	16421008	B_Cells_Pritchard.36871	0	-	16420626	16421008	0	2	131,197	0,185
chr1	16423599	16424961	K562.782	0	.	16423599	16424961	0	1	1362	0
chr1	16423620	16424627	melanoma_Garraway_short_term_cultures.1206	0	.	16423620	16424627	0	1	1007	0
chr1	16423697	16426387	T47D_Burge_Thompson.514	0	.	16423697	16426387	0	1	2690	0
chr1	16423794	16426081	REMC_MyoepithelialBreast.1573	0	.	16423794	16426081	0	1	2287	0
chr1	16423836	16425219	REMC_BreastStem.684	0	.	16423836	16425219	0	1	1383	0
chr1	16423851	16424512	MeWo_Garraway.609	0	.	16423851	16424512	0	1	661	0
chr1	16424083	16424498	brain_AmbionMAQC.846	0	.	16424083	16424498	0	1	415	0
chr1	16424436	16425624	liver_polyA+.1882	0	.	16424436	16425624	0	1	1188	0
chr1	16425075	16426101	K562.783	0	.	16425075	16426101	0	1	1026	0
chr1	16425124	16425649	HeLa_polyA+_Chen.572	0	.	16425124	16425649	0	1	525	0
chr1	16425462	16425841	B_cells_Cheung.2914	0	.	16425462	16425841	0	1	379	0
chr1	16441170	16445657	B_cells_Cheung.2922	0	.	16441170	16445657	0	1	4487	0
chr1	16441177	16444497	CD4_Plagnol_activated.1291	0	.	16441177	16444497	0	1	3320	0
chr1	16441177	16444506	CD4_Plagnol_resting.1219	0	.	16441177	16444506	0	1	3329	0
chr1	16441198	16444508	melanoma_Garraway_short_term_cultures.1214	0	.	16441198	16444508	0	1	3310	0
chr1	16441204	16445601	B_Cells_Pritchard.36937	0	.	16441204	16445601	0	1	4397	0
chr1	16442355	16444501	K562.788	0	.	16442355	16444501	0	1	2146	0
chr1	16443053	16443734	A549_Myers.1253	0	.	16443053	16443734	0	1	681	0
chr1	16663637	16665906	HIT000045141	0	-	16663637	16665906	0	1	2269	0
chr1	16663938	16664598	B_cells_Cheung.3007	0	.	16663938	16664598	0	1	660	0
chr1	16663945	16664352	K562.793	0	.	16663945	16664352	0	1	407	0
chr1	16663954	16665370	CD4_Plagnol_activated.1389	0	.	16663954	16665370	0	1	1416	0
chr1	16663956	16664573	melanoma_Garraway_short_term_cultures.1238	0	.	16663956	16664573	0	1	617	0
chr1	16663961	16664516	kidney_Gilad.1221	0	.	16663961	16664516	0	1	555	0
chr1	16663968	16664551	H9_polyA+.825	0	.	16663968	16664551	0	1	583	0
chr1	16663978	16664380	NEC_from_H9.1212	0	.	16663978	16664380	0	1	402	0
chr1	16664076	16664396	HeLa_polyA+_Chen.586	0	.	16664076	16664396	0	1	320	0
chr1	16692035	16692924	REMC_MyoepithelialBreast.1588	0	.	16692035	16692924	0	1	889	0
chr1	16693235	16694018	REMC_LuminalBreast.1756	0	.	16693235	16694018	0	1	783	0
chr1	16693240	16694136	H1_polyA+.1980	0	.	16693240	16694136	0	1	896	0
chr1	16693259	16694108	B_cells_Cheung.3033	0	.	16693259	16694108	0	1	849	0
chr1	16693311	16694166	B_Cells_Pritchard.39573	0	-	16693311	16694166	0	1	855	0
chr1	16693698	16694127	MIP101.989	0	.	16693698	16694127	0	1	429	0
chr1	16695604	16697536	H1_polyA+.1982	0	.	16695604	16697536	0	1	1932	0
chr1	16695623	16697048	REMC_LuminalBreast.1757	0	.	16695623	16697048	0	1	1425	0
chr1	16695638	16697539	B_cells_Cheung.3034	0	.	16695638	16697539	0	1	1901	0
chr1	16695645	16696344	brain_AmbionMAQC.970	0	.	16695645	16696344	0	1	699	0
chr1	16695662	16697041	REMC_MyoepithelialBreast.1589	0	.	16695662	16697041	0	1	1379	0
chr1	16697278	16698211	HIT000091466	0	-	16697278	16698211	0	1	933	0
chr1	16697655	16698344	brain_AmbionMAQC.966	0	.	16697655	16698344	0	1	689	0
chr1	16697664	16698325	MCF7_Burge_Thompson.572	0	.	16697664	16698325	0	1	661	0
chr1	16697670	16698204	CD4_Plagnol_resting.1253	0	.	16697670	16698204	0	1	534	0
chr1	16697715	16698323	H9_polyA+.841	0	.	16697715	16698323	0	1	608	0
chr1	16697720	16698324	B_cells_Cheung.3035	0	.	16697720	16698324	0	1	604	0
chr1	16697738	16698327	melanoma_Garraway_short_term_cultures.1246	0	.	16697738	16698327	0	1	589	0
chr1	16697798	16698355	HepG2_Caltech_ENCODE.712	0	.	16697798	16698355	0	1	557	0
chr1	16697975	16698663	A549_Myers.1271	0	.	16697975	16698663	0	1	688	0
chr1	16697975	16698663	A549_Myers.1272	0	+	16697975	16698663	0	2	379,219	0,469
chr1	16719734	16720154	H1_polyA+.1984	0	.	16719734	16720154	0	1	420	0
chr1	16720209	16720680	H1_polyA+.1985	0	.	16720209	16720680	0	1	471	0
chr1	16720262	16720666	ZR751_Thompson.504	0	.	16720262	16720666	0	1	404	0
chr1	16733308	16734201	XR_078219	0	+	16733308	16734201	0	2	79,814	0,79
chr1	16813622	16814766	REMC_LuminalBreast.1781	0	.	16813622	16814766	0	1	1144	0
chr1	16816070	16816459	B_Cells_Pritchard.37837	0	-	16816070	16816459	0	1	389	0
chr1	16833085	16834269	kidney_Gilad.1243	0	+	16833085	16834269	0	2	137,479	0,705
chr1	16835452	16837089	H1_polyA+.2609	0	.	16835452	16837089	0	1	1637	0
chr1	16839281	16839871	REMC_LuminalBreast.1871	0	.	16839281	16839871	0	1	590	0
chr1	16840185	16841083	REMC_LuminalBreast.1872	0	.	16840185	16841083	0	1	898	0
chr1	16926370	16926723	B_Cells_Pritchard.38055	0	.	16926370	16926723	0	1	353	0
chr1	17212055	17212839	B_Cells_Pritchard.38485	0	-	17212055	17212839	0	1	784	0
chr1	17333574	17334310	B_cells_Cheung.3152	0	.	17333574	17334310	0	1	736	0
chr1	17333731	17334144	A549_Myers.1335	0	.	17333731	17334144	0	1	413	0
chr1	17394352	17396109	MDAMB468_Thompson.493	0	.	17394352	17396109	0	1	1757	0
chr1	17642389	17643103	B_cells_Cheung.3192	0	.	17642389	17643103	0	1	714	0
chr1	17668400	17668905	H1_polyA+.2185	0	.	17668400	17668905	0	1	505	0
chr1	17674705	17675592	H1_polyA+.2189	0	.	17674705	17675592	0	1	887	0
chr1	17682602	17683674	H1_polyA+.2194	0	.	17682602	17683674	0	1	1072	0
chr1	17718975	17719809	H1_polyA+.2197	0	.	17718975	17719809	0	1	834	0
chr1	17719304	17721427	prostate_normal.1153	0	+	17719304	17721427	0	2	237,369	0,1754
chr1	17913072	17914494	HepG2_Caltech_ENCODE.769	0	.	17913072	17914494	0	1	1422	0
chr1	18145257	18145862	BT474_Burge_Thompson.715	0	.	18145257	18145862	0	1	605	0
chr1	18151532	18152578	B_Cells_Pritchard.41421	0	.	18151532	18152578	0	1	1046	0
chr1	18151796	18152524	BT474_Burge_Thompson.716	0	.	18151796	18152524	0	1	728	0
chr1	18584192	18584713	brain_AmbionMAQC.1005	0	.	18584192	18584713	0	1	521	0
chr1	18587384	18591552	H1_polyA+.2262	0	.	18587384	18591552	0	1	4168	0
chr1	18609626	18612503	H1_polyA+.2303	0	.	18609626	18612503	0	1	2877	0
chr1	18617634	18618548	H1_polyA+.2304	0	.	18617634	18618548	0	1	914	0
chr1	18618747	18622746	H1_polyA+.2305	0	.	18618747	18622746	0	1	3999	0
chr1	18806884	18807339	B_Cells_Pritchard.43457	0	.	18806884	18807339	0	1	455	0
chr1	18994984	18995742	B_Cells_Pritchard.43989	0	.	18994984	18995742	0	1	758	0
chr1	19019734	19020250	A549_Myers.1418	0	.	19019734	19020250	0	1	516	0
chr1	19188276	19197501	REMC_LuminalBreast.2009	0	-	19188276	19197501	0	3	1076,688,1239	0,7176,7986
chr1	19188773	19198057	REMC_MyoepithelialBreast.1710	0	-	19188773	19198057	0	3	579,39,1987	0,5269,7297
chr1	19195452	19197501	REMC_LuminalBreast.2011	0	.	19195452	19197501	0	1	2049	0
chr1	19196018	19198057	REMC_MyoepithelialBreast.1711	0	.	19196018	19198057	0	1	2039	0
chr1	19208684	19210199	REMC_MyoepithelialBreast.1712	0	.	19208684	19210199	0	1	1515	0
chr1	19218146	19219189	REMC_MyoepithelialBreast.1714	0	.	19218146	19219189	0	1	1043	0
chr1	19229201	19231385	REMC_LuminalBreast.2014	0	.	19229201	19231385	0	1	2184	0
chr1	19229797	19230471	REMC_MyoepithelialBreast.1715	0	.	19229797	19230471	0	1	674	0
chr1	19233677	19234978	REMC_LuminalBreast.2015	0	.	19233677	19234978	0	1	1301	0
chr1	19236221	19236932	REMC_LuminalBreast.2016	0	.	19236221	19236932	0	1	711	0
chr1	19236834	19237492	prostate_carcinoma.1720	0	.	19236834	19237492	0	1	658	0
chr1	19237448	19239899	REMC_LuminalBreast.2017	0	.	19237448	19239899	0	1	2451	0
chr1	19239050	19239804	REMC_MyoepithelialBreast.1717	0	.	19239050	19239804	0	1	754	0
chr1	19243755	19246812	REMC_LuminalBreast.2019	0	.	19243755	19246812	0	1	3057	0
chr1	19252443	19253126	prostate_carcinoma.1721	0	.	19252443	19253126	0	1	683	0
chr1	19252723	19254321	REMC_MyoepithelialBreast.1720	0	.	19252723	19254321	0	1	1598	0
chr1	19253646	19255544	REMC_LuminalBreast.2023	0	.	19253646	19255544	0	1	1898	0
chr1	19256201	19256809	REMC_LuminalBreast.2024	0	.	19256201	19256809	0	1	608	0
chr1	19256337	19261630	prostate_carcinoma.1727	0	-	19256337	19261630	0	2	428,1128	0,4165
chr1	19256337	19257235	prostate_carcinoma.1724	0	.	19256337	19257235	0	1	898	0
chr1	19256923	19257242	liver_polyA+.2207	0	.	19256923	19257242	0	1	319	0
chr1	19257293	19258999	REMC_MyoepithelialBreast.1721	0	.	19257293	19258999	0	1	1706	0
chr1	19257319	19258402	prostate_carcinoma.1725	0	.	19257319	19258402	0	1	1083	0
chr1	19257326	19257886	B_Cells_Pritchard.44543	0	.	19257326	19257886	0	1	560	0
chr1	19257328	19258418	REMC_LuminalBreast.2025	0	.	19257328	19258418	0	1	1090	0
chr1	19257336	19257774	liver_polyA+.2208	0	.	19257336	19257774	0	1	438	0
chr1	19257485	19257881	prostate_normal.1202	0	.	19257485	19257881	0	1	396	0
chr1	19258460	19259279	prostate_carcinoma.1728	0	.	19258460	19259279	0	1	819	0
chr1	19260190	19261630	prostate_carcinoma.1726	0	.	19260190	19261630	0	1	1440	0
chr1	19260808	19261631	liver_polyA+.2212	0	.	19260808	19261631	0	1	823	0
chr1	19261158	19262605	REMC_LuminalBreast.2026	0	.	19261158	19262605	0	1	1447	0
chr1	19261884	19262281	prostate_carcinoma.1729	0	.	19261884	19262281	0	1	397	0
chr1	19263079	19264319	prostate_carcinoma.1730	0	.	19263079	19264319	0	1	1240	0
chr1	19263425	19265079	REMC_MyoepithelialBreast.1723	0	.	19263425	19265079	0	1	1654	0
chr1	19264211	19265094	REMC_LuminalBreast.2175	0	.	19264211	19265094	0	1	883	0
chr1	19265043	19265461	A549_Myers.1437	0	.	19265043	19265461	0	1	418	0
chr1	19265211	19267751	REMC_MyoepithelialBreast.1724	0	.	19265211	19267751	0	1	2540	0
chr1	19267855	19270900	REMC_MyoepithelialBreast.1725	0	.	19267855	19270900	0	1	3045	0
chr1	19268660	19270242	REMC_BreastStem.774	0	.	19268660	19270242	0	1	1582	0
chr1	19271190	19272846	HIT000007379	0	+	19271190	19272846	0	1	1656	0
chr1	19271215	19272116	B_Cells_Pritchard.44587	0	.	19271215	19272116	0	1	901	0
chr1	19409475	19412794	HIT000020953	0	+	19409475	19412794	0	1	3319	0
chr1	19459498	19463728	pHIT000000570	0	-	19459498	19463728	0	5	41,154,126,91,116	0,162,1764,2559,4114
chr1	19460598	19463223	BT474_Burge_Thompson.758	0	.	19460598	19463223	0	1	2625	0
chr1	19460600	19463285	HeLa_polyA+_Chen.719	0	.	19460600	19463285	0	1	2685	0
chr1	19460606	19463267	B_cells_Cheung.3280	0	.	19460606	19463267	0	1	2661	0
chr1	19460613	19463229	ZR751_Thompson.571	0	.	19460613	19463229	0	1	2616	0
chr1	19460620	19463062	BT20_Thompson.571	0	.	19460620	19463062	0	1	2442	0
chr1	19460629	19463243	CD4_Plagnol_activated.1500	0	.	19460629	19463243	0	1	2614	0
chr1	19460631	19463253	CD4_Plagnol_resting.1388	0	.	19460631	19463253	0	1	2622	0
chr1	19460659	19463257	melanoma_Garraway_short_term_cultures.1370	0	.	19460659	19463257	0	1	2598	0
chr1	19460673	19463220	MDAMB468_Thompson.559	0	.	19460673	19463220	0	1	2547	0
chr1	19460982	19463043	MCF10A_Thompson.475	0	.	19460982	19463043	0	1	2061	0
chr1	19461224	19462831	T47D_Burge_Thompson.694	0	.	19461224	19462831	0	1	1607	0
chr1	19461700	19463114	H9_polyA+.979	0	.	19461700	19463114	0	1	1414	0
chr1	19461737	19463110	brain_AmbionMAQC.1030	0	.	19461737	19463110	0	1	1373	0
chr1	19461903	19463058	MDAMB231_Thompson.485	0	.	19461903	19463058	0	1	1155	0
chr1	19462090	19462633	K562.866	0	.	19462090	19462633	0	1	543	0
chr1	19529390	19530093	liver_polyA+.2278	0	.	19529390	19530093	0	1	703	0
chr1	19530201	19531585	B_cells_Cheung.4199	0	.	19530201	19531585	0	1	1384	0
chr1	19530308	19531667	HepG2_Caltech_ENCODE.985	0	.	19530308	19531667	0	1	1359	0
chr1	19530336	19532299	MDAMB231_Thompson.499	0	+	19530336	19532299	0	2	1131,450	0,1513
chr1	19530336	19531133	H9_polyA+.991	0	.	19530336	19531133	0	1	797	0
chr1	19530336	19531813	MDAMB231_Thompson.498	0	.	19530336	19531813	0	1	1477	0
chr1	19530336	19530738	BT474_Burge_Thompson.843	0	.	19530336	19530738	0	1	402	0
chr1	19530336	19531575	BT20_Thompson.530	0	.	19530336	19531575	0	1	1239	0
chr1	19530344	19531508	brain_AmbionMAQC.1058	0	.	19530344	19531508	0	1	1164	0
chr1	19530354	19531592	MIP101.2247	0	.	19530354	19531592	0	1	1238	0
chr1	19530363	19531549	prostate_normal.1391	0	.	19530363	19531549	0	1	1186	0
chr1	19530395	19531526	T47D_Burge_Thompson.659	0	.	19530395	19531526	0	1	1131	0
chr1	19530406	19531552	melanoma_Garraway_short_term_cultures.1397	0	.	19530406	19531552	0	1	1146	0
chr1	19530675	19533518	Rinn_00000855	0	+	19530675	19533518	0	2	792,1670	0,1173
chr1	19530692	19531577	K562.879	0	.	19530692	19531577	0	1	885	0
chr1	19530806	19531571	BT474_Burge_Thompson.844	0	.	19530806	19531571	0	1	765	0
chr1	19530912	19531562	CD4_Plagnol_resting.1368	0	.	19530912	19531562	0	1	650	0
chr1	19530945	19531504	CD4_Snyder.970	0	.	19530945	19531504	0	1	559	0
chr1	19530992	19531519	A549_Myers.1535	0	.	19530992	19531519	0	1	527	0
chr1	19531210	19532010	H9_polyA+.992	0	.	19531210	19532010	0	1	800	0
chr1	19531482	19533525	HIT000020419	0	+	19531482	19533525	0	1	2043	0
chr1	19531659	19533809	B_cells_Cheung.4200	0	.	19531659	19533809	0	1	2150	0
chr1	19531671	19532286	melanoma_Garraway_short_term_cultures.1398	0	.	19531671	19532286	0	1	615	0
chr1	19531686	19532318	prostate_carcinoma.2470	0	.	19531686	19532318	0	1	632	0
chr1	19531689	19532298	brain_AmbionMAQC.1059	0	.	19531689	19532298	0	1	609	0
chr1	19531711	19532281	prostate_normal.1392	0	.	19531711	19532281	0	1	570	0
chr1	19531737	19532915	CD4_Plagnol_resting.1369	0	.	19531737	19532915	0	1	1178	0
chr1	19531781	19532182	testes_Burge.1365	0	.	19531781	19532182	0	1	401	0
chr1	19531785	19532308	MCF7_Burge_Thompson.673	0	.	19531785	19532308	0	1	523	0
chr1	19531799	19533473	BT474_Burge_Thompson.845	0	.	19531799	19533473	0	1	1674	0
chr1	19531891	19532793	K562.880	0	.	19531891	19532793	0	1	902	0
chr1	19532411	19533719	REMC_BreastStem.956	0	.	19532411	19533719	0	1	1308	0
chr1	19532475	19533473	HeLa_polyA+_Chen.710	0	.	19532475	19533473	0	1	998	0
chr1	19532531	19533353	brain_AmbionMAQC.1060	0	.	19532531	19533353	0	1	822	0
chr1	19534626	19535337	B_cells_Cheung.4203	0	.	19534626	19535337	0	1	711	0
chr1	19534640	19535255	CD4_Plagnol_resting.1372	0	.	19534640	19535255	0	1	615	0
chr1	19534895	19536779	H1_polyA+.2348	0	.	19534895	19536779	0	1	1884	0
chr1	19534897	19536595	REMC_BreastStem.958	0	.	19534897	19536595	0	1	1698	0
chr1	19688999	19689499	B_cells_Cheung.3348	0	.	19688999	19689499	0	1	500	0
chr1	19858813	19859138	ovary_Raymond.3637	0	.	19858813	19859138	0	1	325	0
chr1	19879667	19880155	CD4_Snyder.1011	0	.	19879667	19880155	0	1	488	0
chr1	20354898	20355897	REMC_LuminalBreast.2131	0	.	20354898	20355897	0	1	999	0
chr1	20356008	20359545	REMC_LuminalBreast.2132	0	.	20356008	20359545	0	1	3537	0
chr1	20356771	20359646	ENST00000431027	0	+	20356771	20359646	0	2	1556,937	0,1938
chr1	20378023	20379317	K562.922	0	.	20378023	20379317	0	1	1294	0
chr1	20378376	20379558	prostate_carcinoma.1902	0	.	20378376	20379558	0	1	1182	0
chr1	20378876	20379281	colon_Raymond.2571	0	.	20378876	20379281	0	1	405	0
chr1	20395168	20395595	liver_polyA+.2490	0	.	20395168	20395595	0	1	427	0
chr1	20396397	20397069	K562.928	0	.	20396397	20397069	0	1	672	0
chr1	20396402	20397074	brain_AmbionMAQC.1094	0	.	20396402	20397074	0	1	672	0
chr1	20396411	20396939	testes_Burge.1419	0	.	20396411	20396939	0	1	528	0
chr1	20396431	20397008	prostate_carcinoma.1906	0	.	20396431	20397008	0	1	577	0
chr1	20396440	20397050	H1_polyA+.2566	0	.	20396440	20397050	0	1	610	0
chr1	20396457	20396931	liver_polyA+.2491	0	.	20396457	20396931	0	1	474	0
chr1	20396475	20397279	prostate_normal.1287	0	.	20396475	20397279	0	1	804	0
chr1	20396485	20397718	MIP101.1155	0	.	20396485	20397718	0	1	1233	0
chr1	20396557	20397388	REMC_MyoepithelialBreast.1859	0	.	20396557	20397388	0	1	831	0
chr1	20397796	20399530	MIP101.1156	0	.	20397796	20399530	0	1	1734	0
chr1	20398399	20399197	H1_polyA+.2567	0	.	20398399	20399197	0	1	798	0
chr1	20399619	20401881	Rinn_00000859	0	+	20399619	20401881	0	2	109,1138	0,1124
chr1	20404202	20405273	prostate_carcinoma.1907	0	.	20404202	20405273	0	1	1071	0
chr1	20404655	20405513	REMC_MyoepithelialBreast.1860	0	.	20404655	20405513	0	1	858	0
chr1	20410011	20411853	REMC_MyoepithelialBreast.1861	0	.	20410011	20411853	0	1	1842	0
chr1	20410395	20411915	MIP101.1157	0	.	20410395	20411915	0	1	1520	0
chr1	20410979	20412017	BT20_Thompson.552	0	.	20410979	20412017	0	1	1038	0
chr1	20442174	20443735	ENST00000435552	0	+	20442174	20443735	0	2	120,360	0,1201
chr1	20562261	20563050	H1_polyA+.2576	0	.	20562261	20563050	0	1	789	0
chr1	20563660	20564588	prostate_carcinoma.1917	0	.	20563660	20564588	0	1	928	0
chr1	20566068	20566831	prostate_carcinoma.1918	0	.	20566068	20566831	0	1	763	0
chr1	20572019	20576839	Rinn_00002304	0	-	20572019	20576839	0	2	799,380	0,4440
chr1	20572033	20597587	brain_AmbionMAQC.1097	0	-	20572033	20597587	0	2	785,25	0,25529
chr1	20572143	20572699	prostate_carcinoma.1919	0	.	20572143	20572699	0	1	556	0
chr1	20579330	20580567	MDAMB468_Thompson.563	0	.	20579330	20580567	0	1	1237	0
chr1	20579353	20580429	BT20_Thompson.553	0	.	20579353	20580429	0	1	1076	0
chr1	20610622	20616794	pHIT000000601	0	+	20610622	20616794	0	4	140,52,132,27	0,1793,2113,6145
chr1	20690367	20691468	REMC_LuminalBreast.2135	0	.	20690367	20691468	0	1	1101	0
chr1	20691385	20691875	A549_Myers.1566	0	.	20691385	20691875	0	1	490	0
chr1	20692751	20693574	A549_Myers.1567	0	.	20692751	20693574	0	1	823	0
chr1	20692838	20693239	B_Cells_Pritchard.47535	0	.	20692838	20693239	0	1	401	0
chr1	20694800	20695842	CD4_Plagnol_activated.1635	0	.	20694800	20695842	0	1	1042	0
chr1	20694810	20695346	B_cells_Cheung.3498	0	.	20694810	20695346	0	1	536	0
chr1	20694944	20695958	B_Cells_Pritchard.47543	0	.	20694944	20695958	0	1	1014	0
chr1	20694946	20695818	H1_polyA+.2586	0	.	20694946	20695818	0	1	872	0
chr1	20695003	20696167	melanoma_Garraway_short_term_cultures.1472	0	.	20695003	20696167	0	1	1164	0
chr1	20695025	20695806	prostate_carcinoma.1922	0	.	20695025	20695806	0	1	781	0
chr1	20774624	20775072	B_Cells_Pritchard.47729	0	.	20774624	20775072	0	1	448	0
chr1	21379464	21380412	REMC_LuminalBreast.2181	0	.	21379464	21380412	0	1	948	0
chr1	21379642	21380637	H1_polyA+.2984	0	.	21379642	21380637	0	1	995	0
chr1	21379691	21380385	prostate_carcinoma.2153	0	.	21379691	21380385	0	1	694	0
chr1	21379983	21380445	B_Cells_Pritchard.49091	0	.	21379983	21380445	0	1	462	0
chr1	21391828	21392720	REMC_LuminalBreast.2185	0	.	21391828	21392720	0	1	892	0
chr1	21397453	21398356	REMC_LuminalBreast.2187	0	.	21397453	21398356	0	1	903	0
chr1	21405172	21406496	REMC_LuminalBreast.2192	0	.	21405172	21406496	0	1	1324	0
chr1	21406657	21407822	REMC_LuminalBreast.2193	0	.	21406657	21407822	0	1	1165	0
chr1	21407107	21407625	REMC_MyoepithelialBreast.1885	0	.	21407107	21407625	0	1	518	0
chr1	21545644	21547458	B_Cells_Pritchard.49613	0	.	21545644	21547458	0	1	1814	0
chr1	21545833	21547023	HepG2_Caltech_ENCODE.867	0	.	21545833	21547023	0	1	1190	0
chr1	21547930	21550137	H1_polyA+.2644	0	.	21547930	21550137	0	1	2207	0
chr1	21548379	21549352	prostate_normal.1359	0	.	21548379	21549352	0	1	973	0
chr1	21550930	21551557	prostate_carcinoma.1994	0	.	21550930	21551557	0	1	627	0
chr1	21551133	21551517	B_cells_Cheung.3737	0	.	21551133	21551517	0	1	384	0
chr1	21552733	21553188	B_Cells_Pritchard.49635	0	.	21552733	21553188	0	1	455	0
chr1	21555008	21555658	B_Cells_Pritchard.49643	0	.	21555008	21555658	0	1	650	0
chr1	21555240	21555586	A549_Myers.1648	0	.	21555240	21555586	0	1	346	0
chr1	21778518	21779166	REMC_LuminalBreast.2264	0	.	21778518	21779166	0	1	648	0
chr1	21778519	21779525	H1_polyA+.2664	0	.	21778519	21779525	0	1	1006	0
chr1	21779935	21781515	REMC_LuminalBreast.2265	0	.	21779935	21781515	0	1	1580	0
chr1	21780541	21781542	H1_polyA+.2666	0	.	21780541	21781542	0	1	1001	0
chr1	21784681	21786011	REMC_LuminalBreast.2269	0	.	21784681	21786011	0	1	1330	0
chr1	21785548	21786545	H1_polyA+.2668	0	.	21785548	21786545	0	1	997	0
chr1	21786685	21787515	H1_polyA+.2669	0	.	21786685	21787515	0	1	830	0
chr1	21787903	21789156	H1_polyA+.2670	0	.	21787903	21789156	0	1	1253	0
chr1	21869889	21871097	REMC_LuminalBreast.2278	0	.	21869889	21871097	0	1	1208	0
chr1	21870871	21871941	B_Cells_Pritchard.50595	0	.	21870871	21871941	0	1	1070	0
chr1	21983377	21983826	B_cells_Cheung.3774	0	.	21983377	21983826	0	1	449	0
chr1	22151265	22152253	B_cells_Cheung.3819	0	.	22151265	22152253	0	1	988	0
chr1	22154313	22155223	prostate_carcinoma.2159	0	.	22154313	22155223	0	1	910	0
chr1	22154476	22155209	B_Cells_Pritchard.51199	0	.	22154476	22155209	0	1	733	0
chr1	22154508	22155057	B_cells_Cheung.3822	0	.	22154508	22155057	0	1	549	0
chr1	22241775	22243470	REMC_LuminalBreast.2338	0	.	22241775	22243470	0	1	1695	0
chr1	22241810	22242592	REMC_MyoepithelialBreast.1964	0	.	22241810	22242592	0	1	782	0
chr1	22241935	22242327	REMC_BreastStem.1064	0	.	22241935	22242327	0	1	392	0
chr1	22243526	22245310	REMC_LuminalBreast.2339	0	.	22243526	22245310	0	1	1784	0
chr1	22246359	22247252	REMC_LuminalBreast.2340	0	.	22246359	22247252	0	1	893	0
chr1	22247365	22249074	REMC_MyoepithelialBreast.1967	0	.	22247365	22249074	0	1	1709	0
chr1	22247378	22249886	REMC_LuminalBreast.2341	0	.	22247378	22249886	0	1	2508	0
chr1	22248120	22248625	REMC_BreastStem.1066	0	.	22248120	22248625	0	1	505	0
chr1	22293638	22310033	REMC_LuminalBreast.2345	0	.	22293638	22310033	0	1	16395	0
chr1	22293666	22309373	REMC_MyoepithelialBreast.1978	0	.	22293666	22309373	0	1	15707	0
chr1	22304219	22305038	K562.1027	0	.	22304219	22305038	0	1	819	0
chr1	22304281	22306805	B_Cells_Pritchard.51375	0	.	22304281	22306805	0	1	2524	0
chr1	22304355	22305313	melanoma_Garraway_short_term_cultures.1582	0	.	22304355	22305313	0	1	958	0
chr1	22304374	22305152	B_cells_Cheung.3880	0	.	22304374	22305152	0	1	778	0
chr1	22310128	22314842	B_cells_Cheung.3886	0	.	22310128	22314842	0	1	4714	0
chr1	22310176	22311942	CD4_Plagnol_activated.1813	0	.	22310176	22311942	0	1	1766	0
chr1	22310209	22312617	B_Cells_Pritchard.51383	0	.	22310209	22312617	0	1	2408	0
chr1	22310213	22312491	prostate_carcinoma.2188	0	.	22310213	22312491	0	1	2278	0
chr1	22310844	22313448	pHIT000072499	0	-	22310844	22313448	0	2	160,296	0,2308
chr1	22312973	22314148	H1_polyA+.2764	0	.	22312973	22314148	0	1	1175	0
chr1	22346043	22348915	REMC_LuminalBreast.2359	0	.	22346043	22348915	0	1	2872	0
chr1	22346500	22347803	prostate_carcinoma.2197	0	.	22346500	22347803	0	1	1303	0
chr1	22349812	22350974	REMC_MyoepithelialBreast.1992	0	.	22349812	22350974	0	1	1162	0
chr1	22351608	22353289	REMC_LuminalBreast.2361	0	.	22351608	22353289	0	1	1681	0
chr1	22351709	22354397	prostate_carcinoma.2201	0	.	22351709	22354397	0	1	2688	0
chr1	22351775	22352895	REMC_MyoepithelialBreast.1993	0	.	22351775	22352895	0	1	1120	0
chr1	22352181	22352902	B_Cells_Pritchard.51467	0	.	22352181	22352902	0	1	721	0
chr1	22353361	22354439	REMC_MyoepithelialBreast.1994	0	.	22353361	22354439	0	1	1078	0
chr1	22353443	22354374	REMC_LuminalBreast.2356	0	.	22353443	22354374	0	1	931	0
chr1	22354627	22355610	REMC_MyoepithelialBreast.1995	0	.	22354627	22355610	0	1	983	0
chr1	22354659	22355952	B_cells_Cheung.3900	0	.	22354659	22355952	0	1	1293	0
chr1	22354688	22356434	MIP101.1321	0	.	22354688	22356434	0	1	1746	0
chr1	22355350	22356390	prostate_normal.1447	0	.	22355350	22356390	0	1	1040	0
chr1	22358926	22360389	REMC_LuminalBreast.2364	0	.	22358926	22360389	0	1	1463	0
chr1	22362432	22363504	MIP101.1323	0	.	22362432	22363504	0	1	1072	0
chr1	22362448	22363785	B_cells_Cheung.3902	0	.	22362448	22363785	0	1	1337	0
chr1	22362458	22363784	B_Cells_Pritchard.51509	0	.	22362458	22363784	0	1	1326	0
chr1	22365081	22369572	REMC_LuminalBreast.2367	0	.	22365081	22369572	0	1	4491	0
chr1	22365955	22366643	B_Cells_Pritchard.51515	0	.	22365955	22366643	0	1	688	0
chr1	22369686	22388851	B_Cells_Pritchard.51533	0	-	22369686	22388851	0	4	86,3851,477,952	0,3050,10153,18213
chr1	22370916	22374667	REMC_LuminalBreast.2370	0	.	22370916	22374667	0	1	3751	0
chr1	22371044	22374552	REMC_MyoepithelialBreast.1998	0	.	22371044	22374552	0	1	3508	0
chr1	22371135	22374556	K562.1028	0	.	22371135	22374556	0	1	3421	0
chr1	22371135	22374556	K562.1029	0	+	22371135	22374556	0	2	341,2582	0,839
chr1	22371166	22371665	prostate_carcinoma.2204	0	.	22371166	22371665	0	1	499	0
chr1	22371318	22372162	BT474_Burge_Thompson.827	0	.	22371318	22372162	0	1	844	0
chr1	22372182	22375485	MIP101.1326	0	+	22372182	22375485	0	2	357,1899	0,1404
chr1	22372736	22388851	B_Cells_Pritchard.51531	0	+	22372736	22388851	0	2	3851,946	0,15169
chr1	22372782	22375485	MIP101.1327	0	.	22372782	22375485	0	1	2703	0
chr1	22372785	22374837	B_cells_Cheung.3908	0	.	22372785	22374837	0	1	2052	0
chr1	22372846	22374438	REMC_BreastStem.1089	0	.	22372846	22374438	0	1	1592	0
chr1	22373955	22375175	prostate_carcinoma.2207	0	.	22373955	22375175	0	1	1220	0
chr1	22375546	22445870	B_cells_Cheung.3909	0	+	22375546	22445870	0	5	29,185,71,110,335	0,736,2522,12359,69989
chr1	22376798	22379539	B_Cells_Pritchard.51555	0	-	22376798	22379539	0	2	1063,1576	0,1165
chr1	22376798	22379449	B_Cells_Pritchard.51557	0	+	22376798	22379449	0	3	1063,1178,244	0,1165,2407
chr1	22383520	22384307	B_cells_Cheung.3910	0	.	22383520	22384307	0	1	787	0
chr1	22383965	22385712	B_Cells_Pritchard.51599	0	+	22383965	22385712	0	3	398,135,73	0,560,1674
chr1	22386002	22386989	REMC_LuminalBreast.2373	0	.	22386002	22386989	0	1	987	0
chr1	22388408	22389538	REMC_MyoepithelialBreast.1999	0	.	22388408	22389538	0	1	1130	0
chr1	22388475	22389543	MIP101.1328	0	.	22388475	22389543	0	1	1068	0
chr1	22388951	22390268	B_Cells_Pritchard.51633	0	.	22388951	22390268	0	1	1317	0
chr1	22390347	22391474	B_cells_Cheung.3919	0	.	22390347	22391474	0	1	1127	0
chr1	22390382	22391474	B_Cells_Pritchard.51635	0	.	22390382	22391474	0	1	1092	0
chr1	22390673	22391461	BT474_Burge_Thompson.831	0	.	22390673	22391461	0	1	788	0
chr1	22390809	22391364	MDAMB468_Thompson.616	0	.	22390809	22391364	0	1	555	0
chr1	22392844	22393676	B_cells_Cheung.3922	0	.	22392844	22393676	0	1	832	0
chr1	22399557	22400206	B_cells_Cheung.3929	0	.	22399557	22400206	0	1	649	0
chr1	22405540	22407579	B_cells_Cheung.3934	0	.	22405540	22407579	0	1	2039	0
chr1	22406781	22407320	B_Cells_Pritchard.51685	0	.	22406781	22407320	0	1	539	0
chr1	22407657	22408976	B_cells_Cheung.3935	0	.	22407657	22408976	0	1	1319	0
chr1	22408297	22408975	B_Cells_Pritchard.51691	0	.	22408297	22408975	0	1	678	0
chr1	22409032	22410972	B_cells_Cheung.3936	0	.	22409032	22410972	0	1	1940	0
chr1	22409108	22410614	B_Cells_Pritchard.51693	0	.	22409108	22410614	0	1	1506	0
chr1	22409272	22409702	A549_Myers.1738	0	.	22409272	22409702	0	1	430	0
chr1	22409568	22410834	MIP101.1333	0	.	22409568	22410834	0	1	1266	0
chr1	22411063	22411853	B_cells_Cheung.3937	0	.	22411063	22411853	0	1	790	0
chr1	22411107	22411852	B_Cells_Pritchard.51697	0	.	22411107	22411852	0	1	745	0
chr1	22411924	22412575	B_cells_Cheung.3938	0	.	22411924	22412575	0	1	651	0
chr1	22418705	22419245	B_cells_Cheung.3943	0	.	22418705	22419245	0	1	540	0
chr1	22420257	22421055	B_cells_Cheung.3945	0	.	22420257	22421055	0	1	798	0
chr1	22420447	22422149	B_Cells_Pritchard.51741	0	.	22420447	22422149	0	1	1702	0
chr1	22420614	22421077	MIP101.1334	0	.	22420614	22421077	0	1	463	0
chr1	22421165	22425853	B_cells_Cheung.3946	0	.	22421165	22425853	0	1	4688	0
chr1	22422271	22425186	B_Cells_Pritchard.51743	0	.	22422271	22425186	0	1	2915	0
chr1	22426965	22428287	B_cells_Cheung.3948	0	.	22426965	22428287	0	1	1322	0
chr1	22428363	22429851	B_cells_Cheung.3949	0	.	22428363	22429851	0	1	1488	0
chr1	22428752	22429394	B_Cells_Pritchard.51759	0	.	22428752	22429394	0	1	642	0
chr1	22434986	22437046	B_cells_Cheung.3952	0	.	22434986	22437046	0	1	2060	0
chr1	22437136	22438413	B_cells_Cheung.3953	0	.	22437136	22438413	0	1	1277	0
chr1	22437929	22438504	B_Cells_Pritchard.51797	0	.	22437929	22438504	0	1	575	0
chr1	22440896	22441532	B_Cells_Pritchard.51809	0	.	22440896	22441532	0	1	636	0
chr1	22442569	22443314	B_cells_Cheung.3958	0	.	22442569	22443314	0	1	745	0
chr1	22455919	22456353	B_cells_Cheung.3964	0	.	22455919	22456353	0	1	434	0
chr1	22462720	22463347	B_cells_Cheung.3966	0	.	22462720	22463347	0	1	627	0
chr1	22463097	22463613	B_Cells_Pritchard.51909	0	.	22463097	22463613	0	1	516	0
chr1	22466384	22466900	B_cells_Cheung.3967	0	.	22466384	22466900	0	1	516	0
chr1	22466452	22466843	B_Cells_Pritchard.51925	0	.	22466452	22466843	0	1	391	0
chr1	22466973	22467558	B_Cells_Pritchard.51927	0	.	22466973	22467558	0	1	585	0
chr1	22466974	22467538	B_cells_Cheung.3968	0	.	22466974	22467538	0	1	564	0
chr1	22467381	22467703	A549_Myers.1740	0	.	22467381	22467703	0	1	322	0
chr1	22467640	22468510	B_cells_Cheung.3969	0	.	22467640	22468510	0	1	870	0
chr1	22467679	22468042	B_Cells_Pritchard.51929	0	.	22467679	22468042	0	1	363	0
chr1	22471424	22472414	B_cells_Cheung.3973	0	.	22471424	22472414	0	1	990	0
chr1	22471511	22472525	B_Cells_Pritchard.51945	0	.	22471511	22472525	0	1	1014	0
chr1	22476741	22477848	B_cells_Cheung.3975	0	.	22476741	22477848	0	1	1107	0
chr1	22476741	22477321	MIP101.1338	0	.	22476741	22477321	0	1	580	0
chr1	22476747	22477502	B_Cells_Pritchard.51961	0	.	22476747	22477502	0	1	755	0
chr1	22480269	22483011	B_cells_Cheung.3979	0	.	22480269	22483011	0	1	2742	0
chr1	22480555	22481649	B_Cells_Pritchard.51981	0	.	22480555	22481649	0	1	1094	0
chr1	22481588	22483401	MIP101.1340	0	.	22481588	22483401	0	1	1813	0
chr1	22484026	22485721	B_Cells_Pritchard.51991	0	.	22484026	22485721	0	1	1695	0
chr1	22560220	22560908	K562.1032	0	.	22560220	22560908	0	1	688	0
chr1	22563709	22565562	HIT000013632	0	-	22563709	22565562	0	1	1853	0
chr1	22731933	22733262	MIP101.1361	0	.	22731933	22733262	0	1	1329	0
chr1	22733880	22736093	REMC_LuminalBreast.2375	0	.	22733880	22736093	0	1	2213	0
chr1	22735654	22736383	B_cells_Cheung.4002	0	.	22735654	22736383	0	1	729	0
chr1	22737074	22738221	B_cells_Cheung.4003	0	.	22737074	22738221	0	1	1147	0
chr1	22737255	22738525	melanoma_Garraway_short_term_cultures.1590	0	.	22737255	22738525	0	1	1270	0
chr1	22737432	22738502	REMC_LuminalBreast.2376	0	.	22737432	22738502	0	1	1070	0
chr1	22737797	22738619	REMC_MyoepithelialBreast.2002	0	.	22737797	22738619	0	1	822	0
chr1	22740369	22740839	B_Cells_Pritchard.52743	0	.	22740369	22740839	0	1	470	0
chr1	22745709	22746300	CD4_Plagnol_activated.1815	0	.	22745709	22746300	0	1	591	0
chr1	22745972	22746682	BT474_Burge_Thompson.855	0	.	22745972	22746682	0	1	710	0
chr1	22746476	22746927	B_Cells_Pritchard.52775	0	.	22746476	22746927	0	1	451	0
chr1	22751170	22755235	T47D_Burge_Thompson.814	0	+	22751170	22755235	0	2	1318,27	0,4038
chr1	22755839	22756421	T47D_Burge_Thompson.815	0	.	22755839	22756421	0	1	582	0
chr1	22840167	22840672	prostate_normal.1453	0	.	22840167	22840672	0	1	505	0
chr1	22877239	22877700	A549_Myers.1759	0	.	22877239	22877700	0	1	461	0
chr1	23115927	23117161	prostate_carcinoma.2230	0	.	23115927	23117161	0	1	1234	0
chr1	23117041	23118428	MCF10A_Thompson.548	0	.	23117041	23118428	0	1	1387	0
chr1	23117469	23118079	A549_Myers.1770	0	.	23117469	23118079	0	1	610	0
chr1	23117532	23120551	REMC_BreastStem.1092	0	.	23117532	23120551	0	1	3019	0
chr1	23118357	23120411	REMC_MyoepithelialBreast.2017	0	.	23118357	23120411	0	1	2054	0
chr1	23118540	23119786	prostate_carcinoma.2232	0	.	23118540	23119786	0	1	1246	0
chr1	23118668	23120322	REMC_LuminalBreast.2386	0	.	23118668	23120322	0	1	1654	0
chr1	23119084	23120211	MCF7_Burge_Thompson.786	0	.	23119084	23120211	0	1	1127	0
chr1	23119304	23120551	brain_AmbionMAQC.1188	0	.	23119304	23120551	0	1	1247	0
chr1	23124216	23124595	A549_Myers.1773	0	.	23124216	23124595	0	1	379	0
chr1	23200379	23200726	H1_polyA+.2794	0	.	23200379	23200726	0	1	347	0
chr1	23386977	23388260	H1_polyA+.2812	0	.	23386977	23388260	0	1	1283	0
chr1	23388904	23389261	A549_Myers.1791	0	.	23388904	23389261	0	1	357	0
chr1	23495614	23500893	B_cells_Cheung.4061	0	.	23495614	23500893	0	1	5279	0
chr1	23498850	23500892	HeLa_polyA+_Chen.823	0	.	23498850	23500892	0	1	2042	0
chr1	23498889	23500898	B_Cells_Pritchard.54949	0	-	23498889	23500898	0	1	2009	0
chr1	23571245	23571895	REMC_LuminalBreast.2641	0	.	23571245	23571895	0	1	650	0
chr1	23572235	23573677	REMC_LuminalBreast.2642	0	.	23572235	23573677	0	1	1442	0
chr1	23625220	23626397	REMC_MyoepithelialBreast.2092	0	.	23625220	23626397	0	1	1177	0
chr1	23625670	23626286	prostate_carcinoma.2986	0	.	23625670	23626286	0	1	616	0
chr1	23625697	23626228	K562.1084	0	.	23625697	23626228	0	1	531	0
chr1	23747639	23751966	B_Cells_Pritchard.56201	0	+	23747639	23751966	0	2	1018,2856	0,1471
chr1	23748893	23754500	A549_Myers.1852	0	+	23748893	23754500	0	2	42,939	0,4668
chr1	23749578	23751882	prostate_carcinoma.2281	0	.	23749578	23751882	0	1	2304	0
chr1	23750635	23751997	B_cells_Cheung.4108	0	.	23750635	23751997	0	1	1362	0
chr1	23750683	23751880	BT20_Thompson.610	0	.	23750683	23751880	0	1	1197	0
chr1	23750841	23751939	H1_polyA+.2998	0	.	23750841	23751939	0	1	1098	0
chr1	23750995	23753960	MDAMB468_Thompson.645	0	-	23750995	23753960	0	2	156,625	0,2340
chr1	23750998	23753841	Rinn_00001418	0	-	23750998	23753841	0	2	153,293	0,2550
chr1	23752102	23752999	H1_polyA+.2999	0	.	23752102	23752999	0	1	897	0
chr1	23752188	23752923	ZR751_Thompson.690	0	.	23752188	23752923	0	1	735	0
chr1	23752198	23754049	B_Cells_Pritchard.56191	0	.	23752198	23754049	0	1	1851	0
chr1	23752205	23754051	A549_Myers.1851	0	.	23752205	23754051	0	1	1846	0
chr1	23752206	23753999	B_cells_Cheung.4109	0	.	23752206	23753999	0	1	1793	0
chr1	23752207	23753997	prostate_carcinoma.2282	0	.	23752207	23753997	0	1	1790	0
chr1	23752213	23753896	MIP101.1479	0	.	23752213	23753896	0	1	1683	0
chr1	23752225	23754157	BT20_Thompson.611	0	.	23752225	23754157	0	1	1932	0
chr1	23752273	23753968	MCF7_Burge_Thompson.833	0	.	23752273	23753968	0	1	1695	0
chr1	23752289	23753166	T47D_Burge_Thompson.756	0	.	23752289	23753166	0	1	877	0
chr1	23752713	23754017	HeLa_polyA+_Chen.846	0	.	23752713	23754017	0	1	1304	0
chr1	23753023	23753943	ZR751_Thompson.691	0	.	23753023	23753943	0	1	920	0
chr1	23753049	23753999	H1_polyA+.3000	0	.	23753049	23753999	0	1	950	0
chr1	23753166	23753985	T47D_Burge_Thompson.754	0	.	23753166	23753985	0	1	819	0
chr1	23753446	23753905	HeLa_polyA-_Chen.416	0	.	23753446	23753905	0	1	459	0
chr1	23753574	23753882	testes_Burge.1643	0	.	23753574	23753882	0	1	308	0
chr1	23851406	23851916	B_Cells_Pritchard.56513	0	.	23851406	23851916	0	1	510	0
chr1	23853398	23854220	CD4_Plagnol_resting.1762	0	.	23853398	23854220	0	1	822	0
chr1	23861091	23861477	B_Cells_Pritchard.56547	0	.	23861091	23861477	0	1	386	0
chr1	23906618	23907459	brain_AmbionMAQC.1233	0	.	23906618	23907459	0	1	841	0
chr1	23908247	23910038	REMC_LuminalBreast.2871	0	.	23908247	23910038	0	1	1791	0
chr1	23908259	23908850	REMC_MyoepithelialBreast.2190	0	.	23908259	23908850	0	1	591	0
chr1	23908276	23909886	H1_polyA+.3442	0	.	23908276	23909886	0	1	1610	0
chr1	23908313	23908902	kidney_Gilad.1908	0	.	23908313	23908902	0	1	589	0
chr1	23908355	23908834	MeWo_Garraway.899	0	.	23908355	23908834	0	1	479	0
chr1	23908370	23908871	H9_polyA+.1175	0	.	23908370	23908871	0	1	501	0
chr1	23908386	23908919	T47D_Burge_Thompson.801	0	.	23908386	23908919	0	1	533	0
chr1	23908587	23908909	spleen_Raymond.3357	0	.	23908587	23908909	0	1	322	0
chr1	23909031	23909948	REMC_MyoepithelialBreast.2191	0	.	23909031	23909948	0	1	917	0
chr1	23909194	23909821	prostate_carcinoma.2381	0	.	23909194	23909821	0	1	627	0
chr1	23910247	23911442	B_Cells_Pritchard.56695	0	.	23910247	23911442	0	1	1195	0
chr1	23910252	23911410	H1_polyA+.3443	0	.	23910252	23911410	0	1	1158	0
chr1	23912483	23913358	REMC_MyoepithelialBreast.2194	0	.	23912483	23913358	0	1	875	0
chr1	23912799	23918795	liver_polyA+.2975	0	+	23912799	23918795	0	2	184,1294	0,4702
chr1	23913081	23913482	B_Cells_Pritchard.56701	0	.	23913081	23913482	0	1	401	0
chr1	23913586	23914876	B_cells_Cheung.4235	0	.	23913586	23914876	0	1	1290	0
chr1	23913598	23920269	B_Cells_Pritchard.56703	0	-	23913598	23920269	0	3	250,2247,99	0,1553,6572
chr1	23913608	23914927	MIP101.1868	0	.	23913608	23914927	0	1	1319	0
chr1	23913622	23914937	REMC_MyoepithelialBreast.2195	0	.	23913622	23914937	0	1	1315	0
chr1	23913661	23914938	REMC_LuminalBreast.2875	0	.	23913661	23914938	0	1	1277	0
chr1	23913874	23914889	prostate_carcinoma.2379	0	.	23913874	23914889	0	1	1015	0
chr1	23913883	23914902	B_Cells_Pritchard.56705	0	-	23913883	23914902	0	1	1019	0
chr1	23913954	23914984	HepG2_Caltech_ENCODE.964	0	.	23913954	23914984	0	1	1030	0
chr1	23914195	23914871	CD4_Plagnol_activated.1935	0	.	23914195	23914871	0	1	676	0
chr1	23915162	23920811	REMC_MyoepithelialBreast.2196	0	.	23915162	23920811	0	1	5649	0
chr1	23915166	23916239	B_cells_Cheung.4236	0	.	23915166	23916239	0	1	1073	0
chr1	23915181	23921320	H1_polyA+.3446	0	.	23915181	23921320	0	1	6139	0
chr1	23915221	23916128	CD4_Plagnol_activated.1936	0	.	23915221	23916128	0	1	907	0
chr1	23915227	23916404	REMC_BreastStem.1167	0	.	23915227	23916404	0	1	1177	0
chr1	23916290	23920140	B_cells_Cheung.4241	0	.	23916290	23920140	0	1	3850	0
chr1	23916341	23918875	prostate_carcinoma.2387	0	.	23916341	23918875	0	1	2534	0
chr1	23916915	23919242	CD4_Plagnol_activated.1938	0	.	23916915	23919242	0	1	2327	0
chr1	23917162	23918647	HepG2_Caltech_ENCODE.965	0	.	23917162	23918647	0	1	1485	0
chr1	23917521	23918801	prostate_normal.1517	0	.	23917521	23918801	0	1	1280	0
chr1	23917968	23920651	REMC_BreastStem.1169	0	.	23917968	23920651	0	1	2683	0
chr1	23918014	23918678	kidney_Gilad.1918	0	.	23918014	23918678	0	1	664	0
chr1	23918043	23922222	H9_polyA+.1188	0	+	23918043	23922222	0	2	902,489	0,3690
chr1	23918068	23920127	melanoma_Garraway_short_term_cultures.1671	0	.	23918068	23920127	0	1	2059	0
chr1	23918427	23920659	REMC_LuminalBreast.2878	0	.	23918427	23920659	0	1	2232	0
chr1	23918428	23919168	MeWo_Garraway.907	0	.	23918428	23919168	0	1	740	0
chr1	23918963	23920269	prostate_carcinoma.2383	0	-	23918963	23920269	0	2	979,222	0,1084
chr1	23920790	23921107	REMC_LuminalBreast.2879	0	.	23920790	23921107	0	1	317	0
chr1	23924924	23925447	REMC_MyoepithelialBreast.2200	0	.	23924924	23925447	0	1	523	0
chr1	23927766	23929292	REMC_LuminalBreast.2883	0	.	23927766	23929292	0	1	1526	0
chr1	23929180	23932014	H1_polyA+.3451	0	.	23929180	23932014	0	1	2834	0
chr1	23929854	23931081	B_Cells_Pritchard.65949	0	-	23929854	23931081	0	2	660,89	0,1138
chr1	23932131	23933144	REMC_LuminalBreast.2886	0	.	23932131	23933144	0	1	1013	0
chr1	23932147	23933116	REMC_MyoepithelialBreast.2205	0	.	23932147	23933116	0	1	969	0
chr1	23932154	23933089	H1_polyA+.3452	0	.	23932154	23933089	0	1	935	0
chr1	23934078	23934714	CD4_Plagnol_activated.1949	0	.	23934078	23934714	0	1	636	0
chr1	23940722	23941230	H9_polyA+.1199	0	.	23940722	23941230	0	1	508	0
chr1	23940804	23941436	prostate_carcinoma.2796	0	.	23940804	23941436	0	1	632	0
chr1	23962754	23964636	CD4_Plagnol_activated.1962	0	.	23962754	23964636	0	1	1882	0
chr1	23963040	23964357	REMC_LuminalBreast.2896	0	.	23963040	23964357	0	1	1317	0
chr1	23963841	23964338	melanoma_Garraway_short_term_cultures.1682	0	.	23963841	23964338	0	1	497	0
chr1	23966568	23968102	H9_polyA+.1208	0	.	23966568	23968102	0	1	1534	0
chr1	23966591	23969203	REMC_MyoepithelialBreast.2215	0	.	23966591	23969203	0	1	2612	0
chr1	23966633	23969054	REMC_BreastStem.1183	0	.	23966633	23969054	0	1	2421	0
chr1	23966657	23968100	CD4_Plagnol_resting.1890	0	.	23966657	23968100	0	1	1443	0
chr1	23966736	23968809	K562.1245	0	.	23966736	23968809	0	1	2073	0
chr1	23967097	23968613	HeLa_polyA+_Chen.878	0	.	23967097	23968613	0	1	1516	0
chr1	23967223	23969014	REMC_LuminalBreast.2898	0	.	23967223	23969014	0	1	1791	0
chr1	23969342	23969943	HeLa_polyA+_Chen.879	0	.	23969342	23969943	0	1	601	0
chr1	23969410	23970034	B_cells_Cheung.6438	0	.	23969410	23970034	0	1	624	0
chr1	23969458	23970070	H1_polyA+.3470	0	.	23969458	23970070	0	1	612	0
chr1	23969458	23974271	REMC_BreastStem.1184	0	-	23969458	23974271	0	2	1785,2927	0,1886
chr1	23969458	23974271	REMC_BreastStem.1185	0	.	23969458	23974271	0	1	4813	0
chr1	23969496	23969927	CD4_Plagnol_resting.1892	0	.	23969496	23969927	0	1	431	0
chr1	23970194	23974179	REMC_MyoepithelialBreast.2217	0	.	23970194	23974179	0	1	3985	0
chr1	24041690	24042761	REMC_BreastStem.1197	0	.	24041690	24042761	0	1	1071	0
chr1	24121247	24122132	B_cells_Cheung.4272	0	.	24121247	24122132	0	1	885	0
chr1	24122428	24125035	B_cells_Cheung.4273	0	.	24122428	24125035	0	1	2607	0
chr1	24143172	24144537	REMC_MyoepithelialBreast.2127	0	.	24143172	24144537	0	1	1365	0
chr1	24143426	24144514	REMC_BreastStem.1201	0	.	24143426	24144514	0	1	1088	0
chr1	24153304	24155047	REMC_MyoepithelialBreast.2129	0	.	24153304	24155047	0	1	1743	0
chr1	24233153	24234214	HepG2_Caltech_ENCODE.1001	0	.	24233153	24234214	0	1	1061	0
chr1	24315313	24316258	HepG2_Caltech_ENCODE.1011	0	.	24315313	24316258	0	1	945	0
chr1	24348545	24349648	H1_polyA+.3045	0	.	24348545	24349648	0	1	1103	0
chr1	24349422	24349753	H9_polyA-_Chen.418	0	.	24349422	24349753	0	1	331	0
chr1	24349470	24349848	H1_rRNA-depleted_UCSD_REMC.2043	0	.	24349470	24349848	0	1	378	0
chr1	24387964	24389317	B_Cells_Pritchard.57391	0	.	24387964	24389317	0	1	1353	0
chr1	24399315	24410767	Rinn_00000004	0	+	24399315	24410767	0	3	153,137,1559	0,2224,9893
chr1	24399315	24410770	Rinn_00000167	0	+	24399315	24410770	0	3	153,138,1562	0,2223,9893
chr1	24399316	24410767	NR_027087	0	+	24399316	24410767	0	3	152,136,1558	0,2224,9893
chr1	24399316	24410770	ENST00000439059	0	+	24399316	24410770	0	3	152,137,1561	0,2223,9893
chr1	24399316	24410784	HIT000093141	0	+	24399316	24410784	0	3	152,136,1575	0,2224,9893
chr1	24405601	24406121	B_Cells_Pritchard.57471	0	.	24405601	24406121	0	1	520	0
chr1	24405675	24406306	brain_AmbionMAQC.1299	0	.	24405675	24406306	0	1	631	0
chr1	24409535	24410314	prostate_normal.1561	0	.	24409535	24410314	0	1	779	0
chr1	24450719	24452004	H1_polyA+.3056	0	.	24450719	24452004	0	1	1285	0
chr1	24457650	24457961	B_Cells_Pritchard.57629	0	.	24457650	24457961	0	1	311	0
chr1	24505116	24506952	prostate_carcinoma.2417	0	.	24505116	24506952	0	1	1836	0
chr1	24506209	24506755	B_Cells_Pritchard.57769	0	.	24506209	24506755	0	1	546	0
chr1	24507628	24508227	B_Cells_Pritchard.57775	0	.	24507628	24508227	0	1	599	0
chr1	24674329	24675209	HepG2_Caltech_ENCODE.1019	0	.	24674329	24675209	0	1	880	0
chr1	24678699	24679518	REMC_LuminalBreast.2730	0	.	24678699	24679518	0	1	819	0
chr1	24679615	24699199	prostate_carcinoma.2514	0	+	24679615	24699199	0	2	30,568	0,19016
chr1	24698649	24699182	CD4_Plagnol_resting.1997	0	.	24698649	24699182	0	1	533	0
chr1	24736694	24737439	brain_AmbionMAQC.1304	0	.	24736694	24737439	0	1	745	0
chr1	24737613	24740091	BT20_Thompson.672	0	.	24737613	24740091	0	1	2478	0
chr1	24737657	24740149	H1_polyA+.3089	0	.	24737657	24740149	0	1	2492	0
chr1	24737680	24754910	Rinn_00001429	0	-	24737680	24754910	0	3	1273,162,18	0,13284,17212
chr1	24737680	24751031	Rinn_00002307	0	-	24737680	24751031	0	2	1273,67	0,13284
chr1	24737707	24740092	H9_polyA+.1243	0	.	24737707	24740092	0	1	2385	0
chr1	24737716	24740115	REMC_BreastStem.1221	0	.	24737716	24740115	0	1	2399	0
chr1	24737717	24740107	MCF10A_Thompson.616	0	.	24737717	24740107	0	1	2390	0
chr1	24737717	24740061	ZR751_Thompson.728	0	.	24737717	24740061	0	1	2344	0
chr1	24737722	24740083	B_cells_Cheung.4357	0	.	24737722	24740083	0	1	2361	0
chr1	24737724	24739998	T47D_Burge_Thompson.809	0	.	24737724	24739998	0	1	2274	0
chr1	24737725	24740096	B_Cells_Pritchard.58249	0	.	24737725	24740096	0	1	2371	0
chr1	24737726	24740105	CD4_Plagnol_activated.2127	0	.	24737726	24740105	0	1	2379	0
chr1	24737727	24740096	MDAMB468_Thompson.688	0	.	24737727	24740096	0	1	2369	0
chr1	24737727	24740060	BT474_Burge_Thompson.933	0	.	24737727	24740060	0	1	2333	0
chr1	24737729	24740187	MIP101.1595	0	.	24737729	24740187	0	1	2458	0
chr1	24737744	24740091	brain_AmbionMAQC.1305	0	.	24737744	24740091	0	1	2347	0
chr1	24737746	24740114	prostate_carcinoma.2522	0	.	24737746	24740114	0	1	2368	0
chr1	24737774	24740349	melanoma_Garraway_short_term_cultures.1743	0	.	24737774	24740349	0	1	2575	0
chr1	24737785	24740057	HeLa_polyA+_Chen.893	0	.	24737785	24740057	0	1	2272	0
chr1	24737852	24740080	MDAMB231_Thompson.614	0	.	24737852	24740080	0	1	2228	0
chr1	24737878	24755102	HIT000293156	0	-	24737878	24755102	0	3	1075,161,209	0,13087,17015
chr1	24737976	24740060	MCF7_Burge_Thompson.878	0	.	24737976	24740060	0	1	2084	0
chr1	24737991	24738369	liver_polyA+.3139	0	.	24737991	24738369	0	1	378	0
chr1	24737995	24740062	NEC_from_H9.1958	0	.	24737995	24740062	0	1	2067	0
chr1	24738046	24740119	MeWo_Garraway.955	0	.	24738046	24740119	0	1	2073	0
chr1	24738051	24740078	A549_Myers.1965	0	.	24738051	24740078	0	1	2027	0
chr1	24738073	24740111	MeI_Garraway.473	0	.	24738073	24740111	0	1	2038	0
chr1	24875455	24878681	REMC_LuminalBreast.2771	0	.	24875455	24878681	0	1	3226	0
chr1	24875456	24878527	REMC_MyoepithelialBreast.2179	0	.	24875456	24878527	0	1	3071	0
chr1	24875542	24877394	REMC_BreastStem.1232	0	.	24875542	24877394	0	1	1852	0
chr1	24875545	24878203	H1_polyA+.3159	0	.	24875545	24878203	0	1	2658	0
chr1	24875584	24877699	B_cells_Cheung.4397	0	.	24875584	24877699	0	1	2115	0
chr1	24875783	24877612	melanoma_Garraway_short_term_cultures.1756	0	.	24875783	24877612	0	1	1829	0
chr1	24876208	24877116	CD4_Plagnol_resting.1843	0	.	24876208	24877116	0	1	908	0
chr1	24878676	24879524	REMC_MyoepithelialBreast.2180	0	.	24878676	24879524	0	1	848	0
chr1	24879616	24883344	REMC_LuminalBreast.2773	0	.	24879616	24883344	0	1	3728	0
chr1	24880243	24883329	REMC_MyoepithelialBreast.2182	0	.	24880243	24883329	0	1	3086	0
chr1	24881422	24882512	REMC_BreastStem.1236	0	.	24881422	24882512	0	1	1090	0
chr1	24881564	24882238	B_cells_Cheung.4402	0	.	24881564	24882238	0	1	674	0
chr1	24901102	24902227	REMC_LuminalBreast.2760	0	.	24901102	24902227	0	1	1125	0
chr1	24903854	24904403	REMC_LuminalBreast.2761	0	.	24903854	24904403	0	1	549	0
chr1	24903992	24906824	HIT000023531	0	+	24903992	24906824	0	2	1305,114	0,2718
chr1	25329313	25332356	HepG2_Caltech_ENCODE.1063	0	-	25329313	25332356	0	4	1029,51,113,21	0,2140,2571,3022
chr1	25329313	25331142	HepG2_Caltech_ENCODE.1064	0	.	25329313	25331142	0	1	1829	0
chr1	25331245	25332039	HepG2_Caltech_ENCODE.1065	0	.	25331245	25332039	0	1	794	0
chr1	25378384	25415211	pHIT000097387	0	+	25378384	25415211	0	4	50,189,16,144	0,21780,26895,36683
chr1	25378384	25400468	pHIT000000734	0	+	25378384	25400468	0	3	50,189,64	0,21780,22020
chr1	25392213	25392745	B_Cells_Pritchard.60377	0	.	25392213	25392745	0	1	532	0
chr1	25392296	25392787	BT474_Burge_Thompson.966	0	.	25392296	25392787	0	1	491	0
chr1	25393735	25394275	REMC_BreastStem.1291	0	.	25393735	25394275	0	1	540	0
chr1	25398314	25400661	REMC_LuminalBreast.2779	0	.	25398314	25400661	0	1	2347	0
chr1	25398487	25399747	REMC_MyoepithelialBreast.2248	0	.	25398487	25399747	0	1	1260	0
chr1	25398602	25400221	REMC_BreastStem.1293	0	.	25398602	25400221	0	1	1619	0
chr1	25403957	25406659	REMC_BreastStem.1347	0	.	25403957	25406659	0	1	2702	0
chr1	25409191	25413291	REMC_LuminalBreast.2784	0	.	25409191	25413291	0	1	4100	0
chr1	25433732	25434766	K562.1152	0	.	25433732	25434766	0	1	1034	0
chr1	25438481	25439337	CD4_Plagnol_activated.2093	0	.	25438481	25439337	0	1	856	0
chr1	25438496	25440065	melanoma_Garraway_short_term_cultures.1841	0	.	25438496	25440065	0	1	1569	0
chr1	25438659	25439339	CD4_Plagnol_resting.1948	0	.	25438659	25439339	0	1	680	0
chr1	25438840	25439716	HeLa_polyA+_Chen.919	0	.	25438840	25439716	0	1	876	0
chr1	25438868	25440147	H1_polyA+.3166	0	.	25438868	25440147	0	1	1279	0
chr1	25438922	25439704	CD4_Snyder.1392	0	.	25438922	25439704	0	1	782	0
chr1	25438928	25439276	brain_AmbionMAQC.1330	0	.	25438928	25439276	0	1	348	0
chr1	25438929	25439749	MIP101.1624	0	.	25438929	25439749	0	1	820	0
chr1	25438948	25440167	K562.1155	0	.	25438948	25440167	0	1	1219	0
chr1	25438948	25440167	K562.1154	0	+	25438948	25440167	0	2	875,112	0,1107
chr1	25439006	25439314	A549_Myers.2014	0	.	25439006	25439314	0	1	308	0
chr1	25533163	25533914	REMC_BreastStem.1380	0	.	25533163	25533914	0	1	751	0
chr1	25533164	25534029	REMC_MyoepithelialBreast.2275	0	.	25533164	25534029	0	1	865	0
chr1	25533164	25534033	REMC_LuminalBreast.2810	0	.	25533164	25534033	0	1	869	0
chr1	25988124	25990199	CD4_Plagnol_resting.2076	0	.	25988124	25990199	0	1	2075	0
chr1	25994003	25997619	CD4_Plagnol_activated.2227	0	.	25994003	25997619	0	1	3616	0
chr1	25994019	25994812	CD4_Plagnol_resting.2080	0	.	25994019	25994812	0	1	793	0
chr1	25994921	25997991	CD4_Plagnol_resting.2072	0	.	25994921	25997991	0	1	3070	0
chr1	26079105	26081071	REMC_MyoepithelialBreast.2333	0	.	26079105	26081071	0	1	1966	0
chr1	26155045	26156239	REMC_LuminalBreast.2919	0	.	26155045	26156239	0	1	1194	0
chr1	26245741	26248177	Rinn_00001962	0	+	26245741	26248177	0	2	486,457	0,1979
chr1	26271329	26272216	B_Cells_Pritchard.62601	0	.	26271329	26272216	0	1	887	0
chr1	26293312	26293648	B_Cells_Pritchard.62701	0	+	26293312	26293648	0	1	336	0
chr1	26363238	26367577	pHIT000000761	0	-	26363238	26367577	0	4	211,98,84,84	0,1665,1874,4255
chr1	26363361	26363728	A549_Myers.2087	0	.	26363361	26363728	0	1	367	0
chr1	26423513	26424488	H1_polyA+.3318	0	.	26423513	26424488	0	1	975	0
chr1	26424663	26425025	HepG2_Caltech_ENCODE.1121	0	.	26424663	26425025	0	1	362	0
chr1	26427268	26427786	kidney_Gilad.2197	0	.	26427268	26427786	0	1	518	0
chr1	26427832	26428571	B_Cells_Pritchard.63215	0	-	26427832	26428571	0	2	125,310	0,429
chr1	26676376	26687204	liver_polyA+.3397	0	-	26676376	26687204	0	2	371,126	0,10702
chr1	26687035	26687426	CD4_Plagnol_resting.2122	0	.	26687035	26687426	0	1	391	0
chr1	26688706	26690527	REMC_MyoepithelialBreast.2371	0	.	26688706	26690527	0	1	1821	0
chr1	26688886	26691474	REMC_LuminalBreast.2958	0	.	26688886	26691474	0	1	2588	0
chr1	26689035	26690060	REMC_BreastStem.1440	0	.	26689035	26690060	0	1	1025	0
chr1	26690371	26691494	REMC_BreastStem.1441	0	.	26690371	26691494	0	1	1123	0
chr1	26692117	26693148	B_cells_Cheung.4878	0	.	26692117	26693148	0	1	1031	0
chr1	26693779	26696548	REMC_LuminalBreast.2960	0	.	26693779	26696548	0	1	2769	0
chr1	26694698	26695384	B_cells_Cheung.4881	0	.	26694698	26695384	0	1	686	0
chr1	26694947	26695329	B_Cells_Pritchard.63879	0	-	26694947	26695329	0	1	382	0
chr1	26695549	26702220	B_cells_Cheung.4882	0	.	26695549	26702220	0	1	6671	0
chr1	26695560	26696464	H1_polyA+.3361	0	.	26695560	26696464	0	1	904	0
chr1	26695631	26696361	MIP101.1727	0	.	26695631	26696361	0	1	730	0
chr1	26695805	26696572	B_Cells_Pritchard.63883	0	+	26695805	26696572	0	1	767	0
chr1	26696672	26701932	B_Cells_Pritchard.63693	0	+	26696672	26701932	0	1	5260	0
chr1	26696672	26715288	B_Cells_Pritchard.63695	0	-	26696672	26715288	0	8	787,287,78,630,1126,237,401,14	0,846,1217,1303,2256,3438,3797,18602
chr1	26698141	26698567	BT474_Burge_Thompson.1006	0	.	26698141	26698567	0	1	426	0
chr1	26698798	26700024	H1_polyA+.3363	0	.	26698798	26700024	0	1	1226	0
chr1	26698955	26700043	MIP101.1731	0	.	26698955	26700043	0	1	1088	0
chr1	26699129	26699517	K562.1289	0	.	26699129	26699517	0	1	388	0
chr1	26699134	26699822	prostate_normal.1777	0	.	26699134	26699822	0	1	688	0
chr1	26699278	26700013	pHIT000000782	0	+	26699278	26700013	0	1	735	0
chr1	26700149	26702401	REMC_LuminalBreast.2962	0	.	26700149	26702401	0	1	2252	0
chr1	26701034	26701350	CD4_Plagnol_resting.2123	0	.	26701034	26701350	0	1	316	0
chr1	26775132	26775652	B_cells_Cheung.4890	0	.	26775132	26775652	0	1	520	0
chr1	26775142	26775787	B_Cells_Pritchard.64275	0	+	26775142	26775787	0	1	645	0
chr1	26819104	26824224	B_Cells_Pritchard.63961	0	+	26819104	26824224	0	3	2134,59,602	0,4230,4518
chr1	26819670	26821314	REMC_MyoepithelialBreast.2391	0	.	26819670	26821314	0	1	1644	0
chr1	26819677	26821302	B_cells_Cheung.4898	0	.	26819677	26821302	0	1	1625	0
chr1	26819840	26821207	prostate_carcinoma.2812	0	.	26819840	26821207	0	1	1367	0
chr1	26820097	26820700	A549_Myers.2126	0	.	26820097	26820700	0	1	603	0
chr1	26820100	26821160	MIP101.1744	0	.	26820100	26821160	0	1	1060	0
chr1	26891365	26891873	A549_Myers.2128	0	.	26891365	26891873	0	1	508	0
chr1	26891501	26892617	HepG2_Caltech_ENCODE.1138	0	.	26891501	26892617	0	1	1116	0
chr1	26983113	26983934	CD4_Plagnol_resting.2133	0	.	26983113	26983934	0	1	821	0
chr1	26983316	26984461	CD4_Plagnol_activated.2283	0	.	26983316	26984461	0	1	1145	0
chr1	27007099	27008347	REMC_LuminalBreast.2990	0	.	27007099	27008347	0	1	1248	0
chr1	27007886	27011375	B_cells_Cheung.6665	0	.	27007886	27011375	0	1	3489	0
chr1	27008958	27011378	REMC_LuminalBreast.2992	0	.	27008958	27011378	0	1	2420	0
chr1	27011503	27013227	B_cells_Cheung.6666	0	.	27011503	27013227	0	1	1724	0
chr1	27011608	27013094	REMC_BreastStem.1688	0	.	27011608	27013094	0	1	1486	0
chr1	27011638	27013060	B_Cells_Pritchard.67821	0	-	27011638	27013060	0	1	1422	0
chr1	27011831	27012921	prostate_carcinoma.3335	0	.	27011831	27012921	0	1	1090	0
chr1	27014761	27015645	REMC_BreastStem.1690	0	.	27014761	27015645	0	1	884	0
chr1	27015162	27016054	B_cells_Cheung.6668	0	.	27015162	27016054	0	1	892	0
chr1	27015170	27015701	CD4_Plagnol_activated.2336	0	.	27015170	27015701	0	1	531	0
chr1	27015172	27015655	CD4_Plagnol_resting.2149	0	.	27015172	27015655	0	1	483	0
chr1	27018413	27018900	REMC_LuminalBreast.2994	0	.	27018413	27018900	0	1	487	0
chr1	27019162	27020595	B_cells_Cheung.6669	0	.	27019162	27020595	0	1	1433	0
chr1	27019235	27020300	B_Cells_Pritchard.64291	0	+	27019235	27020300	0	1	1065	0
chr1	27057799	27058627	CD4_Plagnol_activated.2289	0	.	27057799	27058627	0	1	828	0
chr1	27058065	27058402	A549_Myers.2154	0	.	27058065	27058402	0	1	337	0
chr1	27075234	27077452	MDAMB468_Thompson.768	0	.	27075234	27077452	0	1	2218	0
chr1	27075281	27077393	MDAMB231_Thompson.688	0	.	27075281	27077393	0	1	2112	0
chr1	27075571	27077435	MeWo_Garraway.1103	0	.	27075571	27077435	0	1	1864	0
chr1	27076937	27077456	T47D_Burge_Thompson.899	0	.	27076937	27077456	0	1	519	0
chr1	27160584	27161961	REMC_MyoepithelialBreast.2441	0	.	27160584	27161961	0	1	1377	0
chr1	27160591	27165918	REMC_LuminalBreast.3024	0	.	27160591	27165918	0	1	5327	0
chr1	27170418	27171181	REMC_LuminalBreast.3027	0	.	27170418	27171181	0	1	763	0
chr1	27175602	27176512	REMC_LuminalBreast.3032	0	.	27175602	27176512	0	1	910	0
chr1	27201729	27202404	REMC_BreastStem.1471	0	.	27201729	27202404	0	1	675	0
chr1	27201769	27202410	H1_polyA+.3536	0	.	27201769	27202410	0	1	641	0
chr1	27201789	27202414	BT20_Thompson.742	0	.	27201789	27202414	0	1	625	0
chr1	27201815	27202441	HepG2_Caltech_ENCODE.1143	0	.	27201815	27202441	0	1	626	0
chr1	27201844	27202348	prostate_carcinoma.3382	0	.	27201844	27202348	0	1	504	0
chr1	27201850	27202434	melanoma_Garraway_short_term_cultures.2013	0	.	27201850	27202434	0	1	584	0
chr1	27215080	27218499	REMC_MyoepithelialBreast.2450	0	.	27215080	27218499	0	1	3419	0
chr1	27215180	27216645	REMC_LuminalBreast.3127	0	.	27215180	27216645	0	1	1465	0
chr1	27216124	27216813	H1_polyA+.3485	0	.	27216124	27216813	0	1	689	0
chr1	27218942	27221934	REMC_LuminalBreast.3129	0	.	27218942	27221934	0	1	2992	0
chr1	27225827	27227275	REMC_LuminalBreast.3130	0	.	27225827	27227275	0	1	1448	0
chr1	27227688	27228817	REMC_MyoepithelialBreast.2453	0	.	27227688	27228817	0	1	1129	0
chr1	27230254	27231379	H1_polyA+.3487	0	.	27230254	27231379	0	1	1125	0
chr1	27230802	27231114	B_Cells_Pritchard.65129	0	.	27230802	27231114	0	1	312	0
chr1	27243747	27244483	REMC_LuminalBreast.3133	0	.	27243747	27244483	0	1	736	0
chr1	27246602	27247816	REMC_MyoepithelialBreast.2457	0	.	27246602	27247816	0	1	1214	0
chr1	27247019	27247799	REMC_LuminalBreast.3135	0	.	27247019	27247799	0	1	780	0
chr1	27251547	27252010	B_cells_Cheung.4935	0	.	27251547	27252010	0	1	463	0
chr1	27256879	27263071	REMC_LuminalBreast.3132	0	.	27256879	27263071	0	1	6192	0
chr1	27257741	27258912	REMC_MyoepithelialBreast.2462	0	.	27257741	27258912	0	1	1171	0
chr1	27257779	27258458	B_Cells_Pritchard.65331	0	.	27257779	27258458	0	1	679	0
chr1	27261577	27262346	REMC_BreastStem.1476	0	.	27261577	27262346	0	1	769	0
chr1	27261784	27262238	prostate_carcinoma.2824	0	.	27261784	27262238	0	1	454	0
chr1	27261804	27262539	REMC_MyoepithelialBreast.2465	0	.	27261804	27262539	0	1	735	0
chr1	27267534	27268278	H1_polyA+.3497	0	.	27267534	27268278	0	1	744	0
chr1	27268825	27271003	REMC_MyoepithelialBreast.2468	0	.	27268825	27271003	0	1	2178	0
chr1	27268852	27269926	H1_polyA+.3498	0	.	27268852	27269926	0	1	1074	0
chr1	27269122	27272625	REMC_LuminalBreast.3058	0	.	27269122	27272625	0	1	3503	0
chr1	27272049	27275026	REMC_BreastStem.1526	0	.	27272049	27275026	0	1	2977	0
chr1	27272067	27272588	REMC_MyoepithelialBreast.2470	0	.	27272067	27272588	0	1	521	0
chr1	27272774	27275143	REMC_MyoepithelialBreast.2665	0	.	27272774	27275143	0	1	2369	0
chr1	27272796	27275212	REMC_LuminalBreast.3514	0	.	27272796	27275212	0	1	2416	0
chr1	27275336	27276637	REMC_LuminalBreast.3515	0	.	27275336	27276637	0	1	1301	0
chr1	27277507	27278317	REMC_MyoepithelialBreast.2668	0	.	27277507	27278317	0	1	810	0
chr1	27282258	27289735	REMC_BreastStem.1537	0	.	27282258	27289735	0	1	7477	0
chr1	27282274	27289342	REMC_MyoepithelialBreast.2671	0	.	27282274	27289342	0	1	7068	0
chr1	27285491	27285997	BT474_Burge_Thompson.1023	0	.	27285491	27285997	0	1	506	0
chr1	27285512	27286099	B_Cells_Pritchard.65439	0	.	27285512	27286099	0	1	587	0
chr1	27285525	27286126	prostate_carcinoma.2826	0	.	27285525	27286126	0	1	601	0
chr1	27289470	27292997	REMC_MyoepithelialBreast.2672	0	.	27289470	27292997	0	1	3527	0
chr1	27429255	27433561	Rinn_00002324	0	-	27429255	27433561	0	2	115,223	0,4083
chr1	27516456	27518351	REMC_BreastStem.1597	0	.	27516456	27518351	0	1	1895	0
chr1	27537434	27538239	B_cells_Cheung.5086	0	.	27537434	27538239	0	1	805	0
chr1	27537446	27539186	REMC_LuminalBreast.3111	0	.	27537446	27539186	0	1	1740	0
chr1	27537459	27539204	H1_polyA+.3561	0	.	27537459	27539204	0	1	1745	0
chr1	27537755	27538241	B_Cells_Pritchard.70069	0	-	27537755	27538241	0	1	486	0
chr1	27596103	27596651	CD4_Plagnol_activated.2568	0	.	27596103	27596651	0	1	548	0
chr1	27596119	27596640	prostate_carcinoma.2875	0	.	27596119	27596640	0	1	521	0
chr1	27596120	27596654	B_cells_Cheung.4990	0	.	27596120	27596654	0	1	534	0
chr1	27596286	27596638	A549_Myers.2228	0	.	27596286	27596638	0	1	352	0
chr1	27596723	27600859	CD4_Plagnol_activated.2569	0	.	27596723	27600859	0	1	4136	0
chr1	27597646	27598224	CD4_Snyder.1665	0	.	27597646	27598224	0	1	578	0
chr1	27598818	27600324	MCF7_Burge_Thompson.963	0	.	27598818	27600324	0	1	1506	0
chr1	27598942	27599586	CD4_Snyder.1669	0	.	27598942	27599586	0	1	644	0
chr1	27599045	27601263	melanoma_Garraway_short_term_cultures.2037	0	.	27599045	27601263	0	1	2218	0
chr1	27599271	27600630	MCF10A_Thompson.708	0	.	27599271	27600630	0	1	1359	0
chr1	27599746	27601137	H1_polyA+.3672	0	.	27599746	27601137	0	1	1391	0
chr1	27600035	27600714	CD4_Snyder.1671	0	.	27600035	27600714	0	1	679	0
chr1	27601541	27602002	A549_Myers.2231	0	.	27601541	27602002	0	1	461	0
chr1	27695681	27696399	B_Cells_Pritchard.66975	0	.	27695681	27696399	0	1	718	0
chr1	27696446	27697303	REMC_LuminalBreast.3144	0	.	27696446	27697303	0	1	857	0
chr1	27700551	27701257	REMC_LuminalBreast.3147	0	.	27700551	27701257	0	1	706	0
chr1	27874830	27875599	B_cells_Cheung.5106	0	.	27874830	27875599	0	1	769	0
chr1	27882321	27882857	B_cells_Cheung.5114	0	.	27882321	27882857	0	1	536	0
chr1	28054218	28060614	REMC_LuminalBreast.3215	0	.	28054218	28060614	0	1	6396	0
chr1	28117200	28117946	REMC_LuminalBreast.3227	0	.	28117200	28117946	0	1	746	0
chr1	28394542	28395037	B_cells_Cheung.5260	0	.	28394542	28395037	0	1	495	0
chr1	28395607	28397534	REMC_LuminalBreast.3294	0	.	28395607	28397534	0	1	1927	0
chr1	28395817	28397471	B_cells_Cheung.5262	0	.	28395817	28397471	0	1	1654	0
chr1	28396628	28397420	B_Cells_Pritchard.75745	0	+	28396628	28397420	0	1	792	0
chr1	28446161	28446494	BT474_Burge_Thompson.1100	0	.	28446161	28446494	0	1	333	0
chr1	28446164	28446481	CD4_Snyder.1765	0	.	28446164	28446481	0	1	317	0
chr1	28446188	28446503	CD4_Plagnol_resting.2429	0	.	28446188	28446503	0	1	315	0
chr1	28485589	28486979	HIT000014086	0	+	28485589	28486979	0	1	1390	0
chr1	28491730	28492877	REMC_LuminalBreast.3314	0	.	28491730	28492877	0	1	1147	0
chr1	28491793	28494106	REMC_MyoepithelialBreast.2702	0	.	28491793	28494106	0	1	2313	0
chr1	28491798	28494150	REMC_BreastStem.1771	0	.	28491798	28494150	0	1	2352	0
chr1	28494334	28498766	REMC_BreastStem.1772	0	.	28494334	28498766	0	1	4432	0
chr1	28494349	28496896	REMC_MyoepithelialBreast.2703	0	.	28494349	28496896	0	1	2547	0
chr1	28494378	28496771	REMC_LuminalBreast.3316	0	.	28494378	28496771	0	1	2393	0
chr1	28512235	28514067	REMC_BreastStem.1652	0	.	28512235	28514067	0	1	1832	0
chr1	28526553	28526896	B_cells_Cheung.5352	0	.	28526553	28526896	0	1	343	0
chr1	28538703	28545185	B_Cells_Pritchard.68569	0	-	28538703	28545185	0	2	139,395	0,6087
chr1	28743532	28743836	CD4_Plagnol_resting.2729	0	.	28743532	28743836	0	1	304	0
chr1	28743562	28743945	HeLa_polyA+_Chen.1098	0	.	28743562	28743945	0	1	383	0
chr1	28743575	28744354	CD4_Plagnol_activated.2514	0	.	28743575	28744354	0	1	779	0
chr1	28743588	28744240	B_Cells_Pritchard.96469	0	+	28743588	28744240	0	2	267,193	0,459
chr1	28780153	28780997	lymph_node_Burge.2058	0	-	28780153	28780997	0	2	175,309	0,535
chr1	28780233	28782231	HIT000386638	0	+	28780233	28782231	0	1	1998	0
chr1	28780429	28781017	CD4_Snyder.1794	0	.	28780429	28781017	0	1	588	0
chr1	28780506	28780997	lymph_node_Burge.2060	0	.	28780506	28780997	0	1	491	0
chr1	28780519	28780924	IMR90_UCSD_REMC.1546	0	+	28780519	28780924	0	1	405	0
chr1	28780566	28780952	MB435_Burge.1758	0	.	28780566	28780952	0	1	386	0
chr1	28780603	28781015	liver_polyA+.3820	0	.	28780603	28781015	0	1	412	0
chr1	28788027	28788390	REMC_MyoepithelialBreast.2705	0	.	28788027	28788390	0	1	363	0
chr1	28862759	28863460	B_cells_Cheung.5417	0	.	28862759	28863460	0	1	701	0
chr1	28862965	28863972	B_Cells_Pritchard.96727	0	-	28862965	28863972	0	1	1007	0
chr1	28929789	28930601	REMC_LuminalBreast.3373	0	.	28929789	28930601	0	1	812	0
chr1	28931073	28931523	REMC_MyoepithelialBreast.2743	0	.	28931073	28931523	0	1	450	0
chr1	28931115	28932165	REMC_LuminalBreast.3374	0	.	28931115	28932165	0	1	1050	0
chr1	28932344	28933970	REMC_MyoepithelialBreast.2744	0	.	28932344	28933970	0	1	1626	0
chr1	28978123	28979415	REMC_BreastStem.1677	0	.	28978123	28979415	0	1	1292	0
chr1	29065382	29070531	prostate_carcinoma.3110	0	-	29065382	29070531	0	2	210,941	0,4208
chr1	29066672	29070366	Rinn_00000174	0	+	29066672	29070366	0	2	992,756	0,2938
chr1	29066673	29070383	HIT000097415	0	+	29066673	29070383	0	2	991,772	0,2938
chr1	29066673	29070366	ENST00000443593	0	+	29066673	29070366	0	2	991,755	0,2938
chr1	29069427	29070265	REMC_MyoepithelialBreast.2770	0	.	29069427	29070265	0	1	838	0
chr1	29069490	29070365	brain_AmbionMAQC.1603	0	.	29069490	29070365	0	1	875	0
chr1	29069608	29070553	CD4_Plagnol_resting.2525	0	.	29069608	29070553	0	1	945	0
chr1	29069612	29070539	CD4_Plagnol_activated.2588	0	.	29069612	29070539	0	1	927	0
chr1	29069625	29070353	melanoma_Garraway_short_term_cultures.2234	0	.	29069625	29070353	0	1	728	0
chr1	29069658	29070360	MeWo_Garraway.1240	0	.	29069658	29070360	0	1	702	0
chr1	29069686	29070288	B_cells_Cheung.5475	0	.	29069686	29070288	0	1	602	0
chr1	29069749	29070340	H9_polyA+.1531	0	.	29069749	29070340	0	1	591	0
chr1	29072461	29072928	CD4_Plagnol_resting.2529	0	.	29072461	29072928	0	1	467	0
chr1	29081185	29081593	A549_Myers.2385	0	.	29081185	29081593	0	1	408	0
chr1	29083793	29084306	B_Cells_Pritchard.69161	0	+	29083793	29084306	0	1	513	0
chr1	29324092	29325718	REMC_MyoepithelialBreast.2829	0	.	29324092	29325718	0	1	1626	0
chr1	29326535	29329360	prostate_normal.2136	0	-	29326535	29329360	0	2	1721,502	0,2323
chr1	29326539	29327658	REMC_BreastStem.1708	0	.	29326539	29327658	0	1	1119	0
chr1	29326540	29328276	brain_AmbionMAQC.1609	0	.	29326540	29328276	0	1	1736	0
chr1	29326706	29328028	REMC_MyoepithelialBreast.2830	0	.	29326706	29328028	0	1	1322	0
chr1	29328735	29330020	REMC_BreastStem.1709	0	.	29328735	29330020	0	1	1285	0
chr1	29328755	29342040	prostate_carcinoma.3461	0	+	29328755	29342040	0	2	639,73	0,13212
chr1	29328756	29329360	prostate_normal.2138	0	.	29328756	29329360	0	1	604	0
chr1	29332661	29335126	REMC_BreastStem.1710	0	.	29332661	29335126	0	1	2465	0
chr1	29332720	29334033	brain_AmbionMAQC.1612	0	.	29332720	29334033	0	1	1313	0
chr1	29332782	29333373	REMC_MyoepithelialBreast.2831	0	.	29332782	29333373	0	1	591	0
chr1	29332782	29333334	prostate_carcinoma.3463	0	.	29332782	29333334	0	1	552	0
chr1	29333630	29334841	REMC_MyoepithelialBreast.2832	0	.	29333630	29334841	0	1	1211	0
chr1	29334127	29335135	brain_AmbionMAQC.1613	0	.	29334127	29335135	0	1	1008	0
chr1	29334238	29335188	prostate_normal.2141	0	.	29334238	29335188	0	1	950	0
chr1	29384709	29386711	B_cells_Cheung.5632	0	.	29384709	29386711	0	1	2002	0
chr1	29385058	29385541	brain_AmbionMAQC.1614	0	.	29385058	29385541	0	1	483	0
chr1	29385079	29385615	HeLa_polyA+_Chen.1144	0	.	29385079	29385615	0	1	536	0
chr1	29387124	29389211	H1_polyA+.4038	0	.	29387124	29389211	0	1	2087	0
chr1	29387370	29389245	REMC_LuminalBreast.3830	0	.	29387370	29389245	0	1	1875	0
chr1	29387485	29389085	REMC_MyoepithelialBreast.2861	0	.	29387485	29389085	0	1	1600	0
chr1	29529596	29537224	REMC_LuminalBreast.3499	0	.	29529596	29537224	0	1	7628	0
chr1	29529892	29530861	REMC_MyoepithelialBreast.2884	0	.	29529892	29530861	0	1	969	0
chr1	29538122	29539262	REMC_LuminalBreast.3500	0	.	29538122	29539262	0	1	1140	0
chr1	29539544	29543497	REMC_LuminalBreast.3501	0	.	29539544	29543497	0	1	3953	0
chr1	29540339	29541224	REMC_MyoepithelialBreast.2886	0	.	29540339	29541224	0	1	885	0
chr1	29543623	29545118	REMC_LuminalBreast.3502	0	.	29543623	29545118	0	1	1495	0
chr1	29957134	29958001	Rinn_00000877	0	+	29957134	29958001	0	2	101,659	0,208
chr1	30170221	30170870	H9_polyA+.1568	0	+	30170221	30170870	0	2	141,374	0,275
chr1	30259384	30283046	Rinn_00000496	0	-	30259384	30283046	0	7	559,53,203,1160,202,233,116	0,1292,2768,10073,15338,22820,23546
chr1	30259385	30283046	ENST00000445180	0	-	30259385	30283046	0	7	558,52,202,1159,201,232,115	0,1292,2768,10073,15338,22820,23546
chr1	30414692	30434210	pHIT000000903	0	-	30414692	30434210	0	4	106,73,54,76	0,17880,19108,19442
chr1	30498778	30506595	Rinn_00000879	0	+	30498778	30506595	0	3	120,121,2745	0,2633,5072
chr1	30661257	30666542	Rinn_00000176	0	+	30661257	30666542	0	3	50,108,326	0,1022,4959
chr1	30661258	30666542	ENST00000420354	0	+	30661258	30666542	0	3	49,107,325	0,1022,4959
chr1	30768889	30774170	MCF10A_Thompson.788	0	+	30768889	30774170	0	2	220,839	0,4442
chr1	30840631	30840942	B_cells_Cheung.5656	0	.	30840631	30840942	0	1	311	0
chr1	30842320	30843463	B_cells_Cheung.5657	0	.	30842320	30843463	0	1	1143	0
chr1	30844945	30846828	B_cells_Cheung.5659	0	.	30844945	30846828	0	1	1883	0
chr1	30847103	30847594	B_Cells_Pritchard.73633	0	.	30847103	30847594	0	1	491	0
chr1	30937302	30939466	REMC_BreastStem.1724	0	.	30937302	30939466	0	1	2164	0
chr1	31008379	31009671	B_cells_Cheung.5675	0	.	31008379	31009671	0	1	1292	0
chr1	31013641	31015998	B_cells_Cheung.5679	0	.	31013641	31015998	0	1	2357	0
chr1	31017712	31018609	B_Cells_Pritchard.73971	0	.	31017712	31018609	0	1	897	0
chr1	31017879	31018636	B_cells_Cheung.5682	0	.	31017879	31018636	0	1	757	0
chr1	31018848	31021262	B_cells_Cheung.5683	0	.	31018848	31021262	0	1	2414	0
chr1	31019143	31019935	B_Cells_Pritchard.73975	0	.	31019143	31019935	0	1	792	0
chr1	31020056	31021653	B_Cells_Pritchard.73977	0	.	31020056	31021653	0	1	1597	0
chr1	31021864	31022914	B_cells_Cheung.5685	0	.	31021864	31022914	0	1	1050	0
chr1	31021926	31022894	B_Cells_Pritchard.73979	0	.	31021926	31022894	0	1	968	0
chr1	31022965	31023482	B_cells_Cheung.5686	0	.	31022965	31023482	0	1	517	0
chr1	31023539	31026891	B_cells_Cheung.5687	0	.	31023539	31026891	0	1	3352	0
chr1	31036837	31037444	B_Cells_Pritchard.74045	0	.	31036837	31037444	0	1	607	0
chr1	31055811	31060987	ENST00000440358	0	-	31055811	31060987	0	2	337,107	0,5069
chr1	31069629	31070138	prostate_carcinoma.3169	0	.	31069629	31070138	0	1	509	0
chr1	31069661	31079280	ENST00000430320	0	+	31069661	31079280	0	4	146,48,135,341	0,2377,5520,9278
chr1	31069750	31070083	A549_Myers.2454	0	.	31069750	31070083	0	1	333	0
chr1	31103591	31105688	ENST00000431202	0	+	31103591	31105688	0	2	209,1538	0,559
chr1	31103591	31105797	HIT000096283	0	+	31103591	31105797	0	2	209,1647	0,559
chr1	31106283	31107042	Rinn_00001972	0	+	31106283	31107042	0	2	94,564	0,195
chr1	31159755	31160559	REMC_MyoepithelialBreast.2906	0	.	31159755	31160559	0	1	804	0
chr1	31160616	31161517	REMC_MyoepithelialBreast.2907	0	.	31160616	31161517	0	1	901	0
chr1	31160796	31161480	REMC_BreastStem.1730	0	.	31160796	31161480	0	1	684	0
chr1	31171051	31172226	REMC_MyoepithelialBreast.2914	0	.	31171051	31172226	0	1	1175	0
chr1	31174498	31175613	REMC_BreastStem.1732	0	.	31174498	31175613	0	1	1115	0
chr1	31174893	31175719	melanoma_Garraway_short_term_cultures.2289	0	.	31174893	31175719	0	1	826	0
chr1	31399654	31400387	REMC_LuminalBreast.3542	0	.	31399654	31400387	0	1	733	0
chr1	31399777	31400386	B_Cells_Pritchard.74957	0	.	31399777	31400386	0	1	609	0
chr1	31400480	31401581	H1_polyA+.3991	0	.	31400480	31401581	0	1	1101	0
chr1	31400639	31401133	B_cells_Cheung.5718	0	.	31400639	31401133	0	1	494	0
chr1	31400855	31401453	A549_Myers.2475	0	.	31400855	31401453	0	1	598	0
chr1	31400889	31402196	REMC_MyoepithelialBreast.2974	0	.	31400889	31402196	0	1	1307	0
chr1	31416168	31416586	A549_Myers.2476	0	.	31416168	31416586	0	1	418	0
chr1	31630587	31632383	melanoma_Garraway_short_term_cultures.2359	0	.	31630587	31632383	0	1	1796	0
chr1	31631897	31632285	BT474_Burge_Thompson.1175	0	.	31631897	31632285	0	1	388	0
chr1	31633046	31633554	REMC_MyoepithelialBreast.3020	0	.	31633046	31633554	0	1	508	0
chr1	31639267	31644378	REMC_LuminalBreast.3575	0	.	31639267	31644378	0	1	5111	0
chr1	31639848	31640651	B_Cells_Pritchard.75585	0	.	31639848	31640651	0	1	803	0
chr1	31682054	31683396	H1_polyA+.4012	0	.	31682054	31683396	0	1	1342	0
chr1	31682164	31682931	melanoma_Garraway_short_term_cultures.2363	0	.	31682164	31682931	0	1	767	0
chr1	31682658	31683292	prostate_carcinoma.3255	0	.	31682658	31683292	0	1	634	0
chr1	31683863	31684965	H1_polyA+.4013	0	.	31683863	31684965	0	1	1102	0
chr1	31683903	31684909	HepG2_Caltech_ENCODE.1290	0	.	31683903	31684909	0	1	1006	0
chr1	31687401	31688291	HepG2_Caltech_ENCODE.1291	0	.	31687401	31688291	0	1	890	0
chr1	31691019	31691797	B_Cells_Pritchard.75925	0	.	31691019	31691797	0	1	778	0
chr1	31692165	31693284	B_Cells_Pritchard.75929	0	.	31692165	31693284	0	1	1119	0
chr1	31693682	31708439	B_Cells_Pritchard.75933	0	+	31693682	31708439	0	2	1263,416	0,14341
chr1	31697785	31706791	REMC_LuminalBreast.3586	0	-	31697785	31706791	0	2	8152,36	0,8970
chr1	31697785	31718807	REMC_LuminalBreast.3587	0	.	31697785	31718807	0	1	21022	0
chr1	31701589	31702338	REMC_MyoepithelialBreast.3041	0	.	31701589	31702338	0	1	749	0
chr1	31702954	31704537	BT474_Burge_Thompson.1294	0	.	31702954	31704537	0	1	1583	0
chr1	31703307	31704568	REMC_MyoepithelialBreast.3043	0	.	31703307	31704568	0	1	1261	0
chr1	31703733	31704508	BT20_Thompson.885	0	.	31703733	31704508	0	1	775	0
chr1	31703743	31704505	HepG2_Caltech_ENCODE.1296	0	.	31703743	31704505	0	1	762	0
chr1	31703769	31704523	ZR751_Thompson.955	0	.	31703769	31704523	0	1	754	0
chr1	31704709	31708644	BT474_Burge_Thompson.1296	0	.	31704709	31708644	0	1	3935	0
chr1	31704722	31706999	BT20_Thompson.886	0	.	31704722	31706999	0	1	2277	0
chr1	31706792	31708370	REMC_MyoepithelialBreast.3045	0	.	31706792	31708370	0	1	1578	0
chr1	31707130	31709536	BT20_Thompson.888	0	.	31707130	31709536	0	1	2406	0
chr1	31707283	31707798	B_Cells_Pritchard.76005	0	+	31707283	31707798	0	1	515	0
chr1	31707366	31708269	HepG2_Caltech_ENCODE.1298	0	.	31707366	31708269	0	1	903	0
chr1	31708589	31710516	HepG2_Caltech_ENCODE.1299	0	.	31708589	31710516	0	1	1927	0
chr1	31708597	31711712	REMC_MyoepithelialBreast.3046	0	.	31708597	31711712	0	1	3115	0
chr1	31708749	31709976	BT474_Burge_Thompson.1297	0	.	31708749	31709976	0	1	1227	0
chr1	31709124	31710104	ZR751_Thompson.957	0	.	31709124	31710104	0	1	980	0
chr1	31709181	31709809	B_Cells_Pritchard.76011	0	.	31709181	31709809	0	1	628	0
chr1	31709576	31710137	B_cells_Cheung.5771	0	.	31709576	31710137	0	1	561	0
chr1	31709638	31712977	BT20_Thompson.889	0	.	31709638	31712977	0	1	3339	0
chr1	31709909	31711502	B_Cells_Pritchard.76013	0	.	31709909	31711502	0	1	1593	0
chr1	31710622	31712033	HepG2_Caltech_ENCODE.1300	0	.	31710622	31712033	0	1	1411	0
chr1	31710947	31712003	BT474_Burge_Thompson.1298	0	.	31710947	31712003	0	1	1056	0
chr1	31711632	31712026	B_Cells_Pritchard.76015	0	.	31711632	31712026	0	1	394	0
chr1	31720572	31721224	REMC_LuminalBreast.3588	0	.	31720572	31721224	0	1	652	0
chr1	31722535	31723879	REMC_LuminalBreast.3590	0	.	31722535	31723879	0	1	1344	0
chr1	31722579	31723504	REMC_MyoepithelialBreast.3050	0	.	31722579	31723504	0	1	925	0
chr1	31722795	31723453	B_cells_Cheung.5777	0	.	31722795	31723453	0	1	658	0
chr1	31726542	31727363	REMC_MyoepithelialBreast.3051	0	.	31726542	31727363	0	1	821	0
chr1	31748875	31750129	B_Cells_Pritchard.77261	0	+	31748875	31750129	0	1	1254	0
chr1	31753571	31754461	BT474_Burge_Thompson.1177	0	.	31753571	31754461	0	1	890	0
chr1	31756621	31762433	Rinn_00000005	0	+	31756621	31762433	0	3	403,119,2222	0,2511,3590
chr1	31756622	31762433	NR_027085	0	+	31756622	31762433	0	3	402,118,2221	0,2511,3590
chr1	31756622	31762433	ENST00000412068	0	+	31756622	31762433	0	3	402,118,2221	0,2511,3590
chr1	31756748	31761649	HIT000391189	0	-	31756748	31761649	0	3	276,118,1437	0,2385,3464
chr1	31758383	31764539	B_cells_Cheung.5872	0	+	31758383	31764539	0	2	868,4327	0,1829
chr1	31759895	31775101	B_cells_Cheung.5871	0	.	31759895	31775101	0	1	15206	0
chr1	31762570	31764632	HIT000022815	0	-	31762570	31764632	0	1	2062	0
chr1	31779057	31782175	HIT000048135	0	+	31779057	31782175	0	1	3118	0
chr1	31828860	31832513	REMC_MyoepithelialBreast.3059	0	.	31828860	31832513	0	1	3653	0
chr1	31828930	31831772	REMC_LuminalBreast.3599	0	.	31828930	31831772	0	1	2842	0
chr1	31831879	31833460	REMC_LuminalBreast.3600	0	.	31831879	31833460	0	1	1581	0
chr1	31832797	31833456	REMC_MyoepithelialBreast.3060	0	.	31832797	31833456	0	1	659	0
chr1	31833577	31838277	REMC_LuminalBreast.3601	0	.	31833577	31838277	0	1	4700	0
chr1	31833591	31836818	REMC_MyoepithelialBreast.3061	0	.	31833591	31836818	0	1	3227	0
chr1	31852690	31853737	REMC_BreastStem.1763	0	.	31852690	31853737	0	1	1047	0
chr1	31884742	31885444	B_Cells_Pritchard.76255	0	.	31884742	31885444	0	1	702	0
chr1	31887641	31888638	B_cells_Cheung.5830	0	.	31887641	31888638	0	1	997	0
chr1	31946405	31947813	B_Cells_Pritchard.76297	0	.	31946405	31947813	0	1	1408	0
chr1	31946779	31947774	B_cells_Cheung.5842	0	.	31946779	31947774	0	1	995	0
chr1	31948502	31949303	B_cells_Cheung.5843	0	.	31948502	31949303	0	1	801	0
chr1	31948801	31949814	B_Cells_Pritchard.76301	0	.	31948801	31949814	0	1	1013	0
chr1	31953452	31954361	B_Cells_Pritchard.76319	0	.	31953452	31954361	0	1	909	0
chr1	31953702	31954302	A549_Myers.2521	0	.	31953702	31954302	0	1	600	0
chr1	31961983	31963661	T47D_Burge_Thompson.1072	0	.	31961983	31963661	0	1	1678	0
chr1	32026494	32026840	A549_Myers.2544	0	.	32026494	32026840	0	1	346	0
chr1	32080205	32093756	Rinn_00000499	0	-	32080205	32093756	0	2	2130,129	0,13422
chr1	32080205	32093756	HIT000048355	0	-	32080205	32093756	0	2	2130,128	0,13423
chr1	32080206	32093756	ENST00000453837	0	-	32080206	32093756	0	2	2129,128	0,13422
chr1	32116874	32118436	REMC_LuminalBreast.3628	0	.	32116874	32118436	0	1	1562	0
chr1	32128531	32129484	REMC_MyoepithelialBreast.3096	0	.	32128531	32129484	0	1	953	0
chr1	32132080	32134753	REMC_LuminalBreast.3637	0	.	32132080	32134753	0	1	2673	0
chr1	32133108	32134322	REMC_MyoepithelialBreast.3099	0	.	32133108	32134322	0	1	1214	0
chr1	32139337	32139791	CD4_Plagnol_activated.2716	0	.	32139337	32139791	0	1	454	0
chr1	32200797	32202441	HIT000095038	0	-	32200797	32202441	0	1	1644	0
chr1	32299983	32301257	khalil_12	0	.	32299983	32301257	0	2	847,388	0,886
chr1	32306278	32308041	B_cells_Cheung.15167	0	.	32306278	32308041	0	1	1763	0
chr1	32306284	32308031	melanoma_Garraway_short_term_cultures.2423	0	.	32306284	32308031	0	1	1747	0
chr1	32306791	32307528	CD4_Plagnol_resting.2654	0	.	32306791	32307528	0	1	737	0
chr1	32306919	32308036	CD4_Plagnol_activated.2753	0	.	32306919	32308036	0	1	1117	0
chr1	32306994	32308037	H1_polyA+.4545	0	.	32306994	32308037	0	1	1043	0
chr1	32308297	32309287	B_cells_Cheung.15168	0	.	32308297	32309287	0	1	990	0
chr1	32308310	32309116	melanoma_Garraway_short_term_cultures.2424	0	.	32308310	32309116	0	1	806	0
chr1	32308713	32309170	B_Cells_Pritchard.77339	0	+	32308713	32309170	0	1	457	0
chr1	32308739	32309151	CD4_Plagnol_resting.2655	0	.	32308739	32309151	0	1	412	0
chr1	32343511	32344674	B_Cells_Pritchard.77365	0	.	32343511	32344674	0	1	1163	0
chr1	32480326	32481547	H9_polyA+.1676	0	.	32480326	32481547	0	1	1221	0
chr1	32480344	32481287	HeLa_polyA+_Chen.1215	0	.	32480344	32481287	0	1	943	0
chr1	32480368	32481820	B_cells_Cheung.5928	0	.	32480368	32481820	0	1	1452	0
chr1	32480377	32482156	REMC_BreastStem.1923	0	.	32480377	32482156	0	1	1779	0
chr1	32480410	32480727	H1_rRNA-depleted_UCSD_REMC.2919	0	.	32480410	32480727	0	1	317	0
chr1	32480483	32481680	melanoma_Garraway_short_term_cultures.2456	0	.	32480483	32481680	0	1	1197	0
chr1	32480504	32480832	CD4_Plagnol_resting.2681	0	.	32480504	32480832	0	1	328	0
chr1	32480533	32481669	BT474_Burge_Thompson.1388	0	.	32480533	32481669	0	1	1136	0
chr1	32480640	32481082	MCF10A_Thompson.831	0	.	32480640	32481082	0	1	442	0
chr1	32480674	32481005	MCF7_Burge_Thompson.1417	0	.	32480674	32481005	0	1	331	0
chr1	32482536	32484266	BT474_Burge_Thompson.1389	0	-	32482536	32484266	0	2	664,783	0,947
chr1	32483487	32484267	H9_polyA+.1678	0	.	32483487	32484267	0	1	780	0
chr1	32483491	32484287	B_cells_Cheung.5931	0	.	32483491	32484287	0	1	796	0
chr1	32483493	32484296	HeLa_polyA+_Chen.1218	0	.	32483493	32484296	0	1	803	0
chr1	32483514	32484187	melanoma_Garraway_short_term_cultures.2459	0	.	32483514	32484187	0	1	673	0
chr1	32483598	32484106	A549_Myers.2603	0	.	32483598	32484106	0	1	508	0
chr1	32942773	32943350	REMC_MyoepithelialBreast.3188	0	.	32942773	32943350	0	1	577	0
chr1	32945271	32946109	REMC_MyoepithelialBreast.3190	0	.	32945271	32946109	0	1	838	0
chr1	32954517	32954985	B_Cells_Pritchard.78669	0	.	32954517	32954985	0	1	468	0
chr1	32957397	32958039	prostate_carcinoma.3802	0	.	32957397	32958039	0	1	642	0
chr1	32957594	32959060	B_Cells_Pritchard.78685	0	.	32957594	32959060	0	1	1466	0
chr1	32958027	32960583	A549_Myers.2628	0	+	32958027	32960583	0	2	440,71	0,2485
chr1	32962748	32963118	B_Cells_Pritchard.78701	0	.	32962748	32963118	0	1	370	0
chr1	33142220	33145219	REMC_MyoepithelialBreast.3228	0	.	33142220	33145219	0	1	2999	0
chr1	33142341	33143655	REMC_BreastStem.1917	0	.	33142341	33143655	0	1	1314	0
chr1	33144549	33145193	REMC_BreastStem.1977	0	.	33144549	33145193	0	1	644	0
chr1	33165069	33168317	melanoma_Garraway_short_term_cultures.2608	0	.	33165069	33168317	0	1	3248	0
chr1	33165106	33165855	brain_AmbionMAQC.1821	0	.	33165106	33165855	0	1	749	0
chr1	33165245	33165758	CD4_Plagnol_resting.2840	0	.	33165245	33165758	0	1	513	0
chr1	33165253	33165777	CD4_Plagnol_activated.2935	0	.	33165253	33165777	0	1	524	0
chr1	33165959	33168335	MCF10A_Thompson.861	0	.	33165959	33168335	0	1	2376	0
chr1	33166390	33168336	prostate_carcinoma.3451	0	.	33166390	33168336	0	1	1946	0
chr1	33166451	33168330	brain_AmbionMAQC.1822	0	.	33166451	33168330	0	1	1879	0
chr1	33166455	33168336	MIP101.2329	0	.	33166455	33168336	0	1	1881	0
chr1	33166864	33168330	prostate_normal.2243	0	.	33166864	33168330	0	1	1466	0
chr1	33166994	33168319	CD4_Plagnol_resting.2842	0	.	33166994	33168319	0	1	1325	0
chr1	33167067	33168026	B_Cells_Pritchard.79063	0	+	33167067	33168026	0	1	959	0
chr1	33167106	33168344	MDAMB468_Thompson.1011	0	.	33167106	33168344	0	1	1238	0
chr1	33167116	33168309	H1_polyA+.4294	0	.	33167116	33168309	0	1	1193	0
chr1	33167220	33170066	HIT000020586	0	+	33167220	33170066	0	1	2846	0
chr1	33167221	33168342	CD4_Plagnol_activated.2937	0	.	33167221	33168342	0	1	1121	0
chr1	33167221	33168340	B_cells_Cheung.6185	0	.	33167221	33168340	0	1	1119	0
chr1	33167251	33167686	liver_polyA+.4480	0	.	33167251	33167686	0	1	435	0
chr1	33167254	33172465	Rinn_00001982	0	+	33167254	33172465	0	2	991,124	0,5087
chr1	33167280	33167649	testes_Burge.2318	0	.	33167280	33167649	0	1	369	0
chr1	33167396	33168323	BT20_Thompson.922	0	.	33167396	33168323	0	1	927	0
chr1	33168514	33171455	brain_AmbionMAQC.1823	0	.	33168514	33171455	0	1	2941	0
chr1	33169101	33171421	CD4_Plagnol_activated.2940	0	.	33169101	33171421	0	1	2320	0
chr1	33169103	33171473	B_cells_Cheung.6187	0	.	33169103	33171473	0	1	2370	0
chr1	33169199	33171408	MDAMB468_Thompson.1012	0	.	33169199	33171408	0	1	2209	0
chr1	33169248	33171471	melanoma_Garraway_short_term_cultures.2609	0	.	33169248	33171471	0	1	2223	0
chr1	33169270	33171494	H1_polyA+.4296	0	.	33169270	33171494	0	1	2224	0
chr1	33169275	33171464	CD4_Plagnol_resting.2844	0	.	33169275	33171464	0	1	2189	0
chr1	33169281	33171473	MCF10A_Thompson.864	0	.	33169281	33171473	0	1	2192	0
chr1	33170446	33171413	liver_polyA+.4486	0	.	33170446	33171413	0	1	967	0
chr1	33170644	33171437	CD4_Snyder.2210	0	.	33170644	33171437	0	1	793	0
chr1	33170714	33171215	testes_Burge.2342	0	.	33170714	33171215	0	1	501	0
chr1	33170727	33171086	H9_polyA+.1766	0	.	33170727	33171086	0	1	359	0
chr1	33170797	33171221	K562.1680	0	.	33170797	33171221	0	1	424	0
chr1	33171608	33172690	CD4_Plagnol_resting.2845	0	.	33171608	33172690	0	1	1082	0
chr1	33171622	33172695	B_cells_Cheung.6188	0	.	33171622	33172695	0	1	1073	0
chr1	33171627	33172661	CD4_Plagnol_activated.2946	0	.	33171627	33172661	0	1	1034	0
chr1	33171636	33172603	brain_AmbionMAQC.1825	0	.	33171636	33172603	0	1	967	0
chr1	33171723	33172666	MDAMB468_Thompson.1015	0	.	33171723	33172666	0	1	943	0
chr1	33171724	33173047	MCF10A_Thompson.869	0	.	33171724	33173047	0	1	1323	0
chr1	33171753	33172691	melanoma_Garraway_short_term_cultures.2610	0	.	33171753	33172691	0	1	938	0
chr1	33172218	33172527	testes_Burge.2343	0	.	33172218	33172527	0	1	309	0
chr1	33203893	33204381	B_cells_Cheung.6198	0	.	33203893	33204381	0	1	488	0
chr1	33204563	33208746	REMC_MyoepithelialBreast.3302	0	.	33204563	33208746	0	1	4183	0
chr1	33206142	33207157	REMC_BreastStem.1928	0	.	33206142	33207157	0	1	1015	0
chr1	33208877	33211633	REMC_MyoepithelialBreast.3303	0	.	33208877	33211633	0	1	2756	0
chr1	33210162	33211640	REMC_BreastStem.1931	0	.	33210162	33211640	0	1	1478	0
chr1	33210396	33211141	melanoma_Garraway_short_term_cultures.2620	0	.	33210396	33211141	0	1	745	0
chr1	33210829	33211576	B_cells_Cheung.6200	0	.	33210829	33211576	0	1	747	0
chr1	33211020	33211641	CD4_Plagnol_resting.2849	0	.	33211020	33211641	0	1	621	0
chr1	33213332	33213744	REMC_MyoepithelialBreast.3304	0	.	33213332	33213744	0	1	412	0
chr1	33213359	33213717	REMC_BreastStem.1932	0	.	33213359	33213717	0	1	358	0
chr1	33213871	33214565	REMC_MyoepithelialBreast.3305	0	.	33213871	33214565	0	1	694	0
chr1	33213899	33214293	B_cells_Cheung.6201	0	.	33213899	33214293	0	1	394	0
chr1	33213927	33214576	REMC_BreastStem.1933	0	.	33213927	33214576	0	1	649	0
chr1	33214769	33216796	REMC_MyoepithelialBreast.3306	0	.	33214769	33216796	0	1	2027	0
chr1	33215454	33216596	REMC_BreastStem.1935	0	.	33215454	33216596	0	1	1142	0
chr1	33215539	33216553	melanoma_Garraway_short_term_cultures.2621	0	.	33215539	33216553	0	1	1014	0
chr1	33226542	33233073	B_Cells_Pritchard.79199	0	-	33226542	33233073	0	4	148,452,485,251	0,5254,5718,6280
chr1	33226770	33227209	melanoma_Garraway_short_term_cultures.2624	0	.	33226770	33227209	0	1	439	0
chr1	33228785	33232829	REMC_MyoepithelialBreast.3261	0	.	33228785	33232829	0	1	4044	0
chr1	33228803	33232755	REMC_BreastStem.1943	0	.	33228803	33232755	0	1	3952	0
chr1	33228907	33229362	B_cells_Cheung.6216	0	.	33228907	33229362	0	1	455	0
chr1	33228959	33229263	MB435_Burge.2027	0	.	33228959	33229263	0	1	304	0
chr1	33229554	33232054	melanoma_Garraway_short_term_cultures.2626	0	.	33229554	33232054	0	1	2500	0
chr1	33229562	33232749	B_cells_Cheung.6217	0	.	33229562	33232749	0	1	3187	0
chr1	33231139	33231448	B_Cells_Pritchard.79217	0	-	33231139	33231448	0	1	309	0
chr1	33231244	33232533	H1_polyA+.4305	0	.	33231244	33232533	0	1	1289	0
chr1	33233181	33237995	REMC_MyoepithelialBreast.3262	0	.	33233181	33237995	0	1	4814	0
chr1	33233342	33237999	REMC_LuminalBreast.3965	0	.	33233342	33237999	0	1	4657	0
chr1	33234367	33237943	B_cells_Cheung.6219	0	.	33234367	33237943	0	1	3576	0
chr1	33234368	33235015	H1_polyA+.4307	0	.	33234368	33235015	0	1	647	0
chr1	33234542	33240589	B_Cells_Pritchard.79223	0	-	33234542	33240589	0	2	3384,2152	0,3895
chr1	33234846	33237959	REMC_BreastStem.1945	0	.	33234846	33237959	0	1	3113	0
chr1	33235120	33237924	H1_polyA+.4308	0	.	33235120	33237924	0	1	2804	0
chr1	33242661	33244316	HepG2_Caltech_ENCODE.1567	0	.	33242661	33244316	0	1	1655	0
chr1	33243189	33243926	CD4_Plagnol_resting.2852	0	.	33243189	33243926	0	1	737	0
chr1	33243954	33244904	MeWo_Garraway.1445	0	.	33243954	33244904	0	1	950	0
chr1	33360735	33361262	B_cells_Cheung.6246	0	.	33360735	33361262	0	1	527	0
chr1	33360803	33361384	CD4_Plagnol_resting.2868	0	.	33360803	33361384	0	1	581	0
chr1	33363178	33368180	REMC_LuminalBreast.3852	0	.	33363178	33368180	0	1	5002	0
chr1	33363216	33368141	H1_polyA+.4322	0	.	33363216	33368141	0	1	4925	0
chr1	33365035	33368158	B_cells_Cheung.6249	0	.	33365035	33368158	0	1	3123	0
chr1	33366535	33368128	melanoma_Garraway_short_term_cultures.2666	0	.	33366535	33368128	0	1	1593	0
chr1	33366914	33379908	prostate_carcinoma.3512	0	+	33366914	33379908	0	2	1158,1443	0,11551
chr1	33368352	33369268	HepG2_Caltech_ENCODE.1444	0	.	33368352	33369268	0	1	916	0
chr1	33370089	33374510	B_cells_Cheung.6251	0	.	33370089	33374510	0	1	4421	0
chr1	33370092	33373279	prostate_carcinoma.3514	0	.	33370092	33373279	0	1	3187	0
chr1	33370902	33373274	MIP101.2356	0	.	33370902	33373274	0	1	2372	0
chr1	33372344	33373168	melanoma_Garraway_short_term_cultures.2669	0	.	33372344	33373168	0	1	824	0
chr1	33372503	33373274	HepG2_Caltech_ENCODE.1446	0	.	33372503	33373274	0	1	771	0
chr1	33373052	33374247	REMC_BreastStem.1971	0	.	33373052	33374247	0	1	1195	0
chr1	33373383	33374400	prostate_normal.2276	0	.	33373383	33374400	0	1	1017	0
chr1	33373389	33374315	MIP101.2357	0	.	33373389	33374315	0	1	926	0
chr1	33373389	33374293	melanoma_Garraway_short_term_cultures.2670	0	.	33373389	33374293	0	1	904	0
chr1	33373396	33374338	HepG2_Caltech_ENCODE.1447	0	.	33373396	33374338	0	1	942	0
chr1	33373464	33374388	H1_polyA+.4325	0	.	33373464	33374388	0	1	924	0
chr1	33373527	33374677	CD4_Plagnol_resting.2891	0	.	33373527	33374677	0	1	1150	0
chr1	33374828	33379877	B_Cells_Pritchard.79611	0	+	33374828	33379877	0	2	298,4684	0,365
chr1	33375190	33379956	prostate_carcinoma.3511	0	.	33375190	33379956	0	1	4766	0
chr1	33375562	33382415	REMC_MyoepithelialBreast.3291	0	-	33375562	33382415	0	2	746,3579	0,3274
chr1	33375636	33376527	liver_polyA+.4531	0	.	33375636	33376527	0	1	891	0
chr1	33375636	33376774	liver_polyA+.4530	0	+	33375636	33376774	0	2	603,201	0,937
chr1	33375698	33376495	HepG2_Caltech_ENCODE.1448	0	.	33375698	33376495	0	1	797	0
chr1	33375919	33376436	kidney_Gilad.2932	0	.	33375919	33376436	0	1	517	0
chr1	33376020	33382334	melanoma_Garraway_short_term_cultures.2672	0	.	33376020	33382334	0	1	6314	0
chr1	33377475	33379939	MIP101.2359	0	.	33377475	33379939	0	1	2464	0
chr1	33377900	33379863	CD4_Plagnol_resting.2895	0	.	33377900	33379863	0	1	1963	0
chr1	33378089	33382415	REMC_MyoepithelialBreast.3290	0	.	33378089	33382415	0	1	4326	0
chr1	33378352	33382414	H1_polyA+.4328	0	.	33378352	33382414	0	1	4062	0
chr1	33378622	33379920	prostate_normal.2278	0	.	33378622	33379920	0	1	1298	0
chr1	33378699	33379915	brain_AmbionMAQC.1839	0	.	33378699	33379915	0	1	1216	0
chr1	33378862	33379865	REMC_BreastStem.1973	0	.	33378862	33379865	0	1	1003	0
chr1	33379299	33382396	HepG2_Caltech_ENCODE.1451	0	.	33379299	33382396	0	1	3097	0
chr1	33379638	33382332	CD4_Plagnol_activated.2978	0	.	33379638	33382332	0	1	2694	0
chr1	33380054	33382383	prostate_carcinoma.3515	0	.	33380054	33382383	0	1	2329	0
chr1	33380058	33381418	HIT000016433	0	-	33380058	33381418	0	1	1360	0
chr1	33380074	33382346	MIP101.2360	0	.	33380074	33382346	0	1	2272	0
chr1	33380127	33380669	CD4_Snyder.2233	0	.	33380127	33380669	0	1	542	0
chr1	33380137	33382331	CD4_Plagnol_resting.2896	0	.	33380137	33382331	0	1	2194	0
chr1	33380142	33382334	prostate_normal.2279	0	.	33380142	33382334	0	1	2192	0
chr1	33380172	33380847	ZR751_Thompson.1054	0	.	33380172	33380847	0	1	675	0
chr1	33380187	33382075	BT474_Burge_Thompson.1306	0	.	33380187	33382075	0	1	1888	0
chr1	33380190	33380926	brain_AmbionMAQC.1840	0	.	33380190	33380926	0	1	736	0
chr1	33380217	33381989	MCF7_Burge_Thompson.1185	0	.	33380217	33381989	0	1	1772	0
chr1	33380403	33381666	MDAMB468_Thompson.1017	0	.	33380403	33381666	0	1	1263	0
chr1	33381267	33381798	CD4_Snyder.2235	0	.	33381267	33381798	0	1	531	0
chr1	33381294	33381963	brain_AmbionMAQC.1841	0	.	33381294	33381963	0	1	669	0
chr1	33381372	33382234	BT20_Thompson.926	0	.	33381372	33382234	0	1	862	0
chr1	33540441	33542127	REMC_LuminalBreast.3843	0	.	33540441	33542127	0	1	1686	0
chr1	33559332	33560298	melanoma_Garraway_short_term_cultures.2701	0	.	33559332	33560298	0	1	966	0
chr1	33559463	33560224	H1_polyA+.4337	0	.	33559463	33560224	0	1	761	0
chr1	33693603	33694088	B_Cells_Pritchard.80391	0	.	33693603	33694088	0	1	485	0
chr1	33701218	33701658	B_Cells_Pritchard.80419	0	.	33701218	33701658	0	1	440	0
chr1	33736502	33739869	melanoma_Garraway_short_term_cultures.2750	0	.	33736502	33739869	0	1	3367	0
chr1	33736503	33738304	MeWo_Garraway.1475	0	.	33736503	33738304	0	1	1801	0
chr1	33736823	33738360	CD4_Plagnol_resting.2934	0	.	33736823	33738360	0	1	1537	0
chr1	33736825	33737955	H9_polyA+.1830	0	.	33736825	33737955	0	1	1130	0
chr1	33737383	33738081	REMC_BreastStem.2000	0	.	33737383	33738081	0	1	698	0
chr1	33737386	33738540	MCF7_Burge_Thompson.1196	0	.	33737386	33738540	0	1	1154	0
chr1	33737580	33738114	T47D_Burge_Thompson.1189	0	.	33737580	33738114	0	1	534	0
chr1	33737743	33739646	ZR751_Thompson.1061	0	.	33737743	33739646	0	1	1903	0
chr1	33737976	33739644	brain_AmbionMAQC.1862	0	.	33737976	33739644	0	1	1668	0
chr1	33738017	33739818	prostate_normal.2331	0	.	33738017	33739818	0	1	1801	0
chr1	33738058	33738726	H9_polyA+.1833	0	.	33738058	33738726	0	1	668	0
chr1	33738135	33738650	MDAMB231_Thompson.900	0	.	33738135	33738650	0	1	515	0
chr1	33738146	33738890	MeI_Garraway.732	0	.	33738146	33738890	0	1	744	0
chr1	33738148	33738772	REMC_BreastStem.2001	0	.	33738148	33738772	0	1	624	0
chr1	33738211	33738599	colon_Burge.1791	0	.	33738211	33738599	0	1	388	0
chr1	33740932	33742044	B_cells_Cheung.6310	0	.	33740932	33742044	0	1	1112	0
chr1	33740960	33742513	B_Cells_Pritchard.80471	0	.	33740960	33742513	0	1	1553	0
chr1	33740975	33742243	H1_polyA+.4353	0	.	33740975	33742243	0	1	1268	0
chr1	33741274	33742415	REMC_LuminalBreast.3873	0	.	33741274	33742415	0	1	1141	0
chr1	34534216	34534536	B_Cells_Pritchard.82501	0	.	34534216	34534536	0	1	320	0
chr1	34895353	34895713	B_Cells_Pritchard.83369	0	.	34895353	34895713	0	1	360	0
chr1	34949821	34950308	B_cells_Cheung.6323	0	.	34949821	34950308	0	1	487	0
chr1	34950377	34950906	B_cells_Cheung.6324	0	.	34950377	34950906	0	1	529	0
chr1	35168290	35168662	A549_Myers.2752	0	.	35168290	35168662	0	1	372	0
chr1	35209943	35211594	CD4_Plagnol_resting.2951	0	.	35209943	35211594	0	1	1651	0
chr1	35209943	35211600	HepG2_Caltech_ENCODE.1481	0	.	35209943	35211600	0	1	1657	0
chr1	35210004	35212199	prostate_carcinoma.3628	0	.	35210004	35212199	0	1	2195	0
chr1	35210008	35212328	B_cells_Cheung.6362	0	.	35210008	35212328	0	1	2320	0
chr1	35210727	35211293	melanoma_Garraway_short_term_cultures.2755	0	.	35210727	35211293	0	1	566	0
chr1	35210783	35211424	CD4_Plagnol_activated.3030	0	.	35210783	35211424	0	1	641	0
chr1	35213236	35213812	MCF7_Burge_Thompson.1238	0	.	35213236	35213812	0	1	576	0
chr1	35213856	35214977	liver_polyA+.4664	0	.	35213856	35214977	0	1	1121	0
chr1	35213921	35214929	MCF7_Burge_Thompson.1239	0	.	35213921	35214929	0	1	1008	0
chr1	35214446	35214819	NEC_from_H9.2949	0	.	35214446	35214819	0	1	373	0
chr1	35355775	35356179	melanoma_Garraway_short_term_cultures.2772	0	.	35355775	35356179	0	1	404	0
chr1	35355845	35356185	IMR90_UCSD_REMC.1896	0	-	35355845	35356185	0	1	340	0
chr1	35386109	35386675	REMC_BreastStem.2024	0	.	35386109	35386675	0	1	566	0
chr1	35387186	35387558	B_cells_Cheung.6412	0	.	35387186	35387558	0	1	372	0
chr1	35390287	35392537	REMC_LuminalBreast.3906	0	.	35390287	35392537	0	1	2250	0
chr1	35448649	35451571	H1_polyA+.4597	0	.	35448649	35451571	0	1	2922	0
chr1	35499688	35500101	B_cells_Cheung.6427	0	.	35499688	35500101	0	1	413	0
chr1	35501463	35502100	B_cells_Cheung.6428	0	.	35501463	35502100	0	1	637	0
chr1	36300480	36302319	CD4_Plagnol_resting.3195	0	.	36300480	36302319	0	1	1839	0
chr1	36300483	36302298	MDAMB468_Thompson.1077	0	.	36300483	36302298	0	1	1815	0
chr1	36301943	36302399	HeLa_polyA+_Chen.1421	0	.	36301943	36302399	0	1	456	0
chr1	36303727	36307427	REMC_BreastStem.2176	0	.	36303727	36307427	0	1	3700	0
chr1	36303743	36304631	HeLa_polyA+_Chen.1425	0	.	36303743	36304631	0	1	888	0
chr1	36303743	36304584	HepG2_Caltech_ENCODE.1538	0	.	36303743	36304584	0	1	841	0
chr1	36303766	36310565	H1_polyA+.4803	0	.	36303766	36310565	0	1	6799	0
chr1	36303775	36305656	B_cells_Cheung.6585	0	.	36303775	36305656	0	1	1881	0
chr1	36303777	36304497	CD4_Plagnol_activated.3195	0	.	36303777	36304497	0	1	720	0
chr1	36308586	36309733	CD4_Snyder.2418	0	.	36308586	36309733	0	1	1147	0
chr1	36311634	36312335	REMC_MyoepithelialBreast.3891	0	.	36311634	36312335	0	1	701	0
chr1	36314654	36315548	REMC_MyoepithelialBreast.3893	0	.	36314654	36315548	0	1	894	0
chr1	36314682	36315518	REMC_LuminalBreast.4030	0	.	36314682	36315518	0	1	836	0
chr1	36315600	36317054	REMC_MyoepithelialBreast.3894	0	.	36315600	36317054	0	1	1454	0
chr1	36315760	36317012	REMC_BreastStem.2080	0	.	36315760	36317012	0	1	1252	0
chr1	36316294	36316980	REMC_LuminalBreast.4031	0	.	36316294	36316980	0	1	686	0
chr1	36366340	36367443	REMC_MyoepithelialBreast.3580	0	.	36366340	36367443	0	1	1103	0
chr1	36420562	36422181	REMC_MyoepithelialBreast.3658	0	.	36420562	36422181	0	1	1619	0
chr1	36420623	36422174	REMC_BreastStem.2154	0	.	36420623	36422174	0	1	1551	0
chr1	36429399	36440101	REMC_LuminalBreast.4158	0	.	36429399	36440101	0	1	10702	0
chr1	36430316	36439760	REMC_MyoepithelialBreast.3661	0	.	36430316	36439760	0	1	9444	0
chr1	36435977	36439772	REMC_BreastStem.2160	0	.	36435977	36439772	0	1	3795	0
chr1	36440264	36448381	REMC_LuminalBreast.4160	0	.	36440264	36448381	0	1	8117	0
chr1	36440633	36442525	REMC_MyoepithelialBreast.3662	0	.	36440633	36442525	0	1	1892	0
chr1	36441156	36442531	REMC_BreastStem.2102	0	.	36441156	36442531	0	1	1375	0
chr1	36442585	36446147	REMC_BreastStem.2103	0	.	36442585	36446147	0	1	3562	0
chr1	36443429	36445993	REMC_MyoepithelialBreast.3664	0	.	36443429	36445993	0	1	2564	0
chr1	36451916	36452932	REMC_MyoepithelialBreast.3611	0	.	36451916	36452932	0	1	1016	0
chr1	36451964	36453223	REMC_BreastStem.2107	0	.	36451964	36453223	0	1	1259	0
chr1	36457869	36458945	REMC_LuminalBreast.4162	0	.	36457869	36458945	0	1	1076	0
chr1	36566789	36567304	BT20_Thompson.1005	0	.	36566789	36567304	0	1	515	0
chr1	36568347	36571322	MIP101.2812	0	.	36568347	36571322	0	1	2975	0
chr1	36568836	36570617	K562.1869	0	.	36568836	36570617	0	1	1781	0
chr1	36568837	36569570	H1_polyA+.5154	0	.	36568837	36569570	0	1	733	0
chr1	36568842	36569245	REMC_BreastStem.2265	0	.	36568842	36569245	0	1	403	0
chr1	36568968	36569787	MeWo_Garraway.1597	0	.	36568968	36569787	0	1	819	0
chr1	36569156	36569514	prostate_normal.2490	0	.	36569156	36569514	0	1	358	0
chr1	36569183	36571108	BT20_Thompson.1008	0	.	36569183	36571108	0	1	1925	0
chr1	36569629	36571346	H1_polyA+.5155	0	.	36569629	36571346	0	1	1717	0
chr1	36569895	36571066	REMC_BreastStem.2266	0	.	36569895	36571066	0	1	1171	0
chr1	36570739	36571548	K562.1870	0	.	36570739	36571548	0	1	809	0
chr1	36571400	36572506	REMC_BreastStem.2267	0	.	36571400	36572506	0	1	1106	0
chr1	36571646	36574626	K562.1871	0	+	36571646	36574626	0	2	28,2053	0,927
chr1	36571669	36574606	melanoma_Garraway_short_term_cultures.2923	0	.	36571669	36574606	0	1	2937	0
chr1	36572298	36574601	H1_polyA+.5156	0	.	36572298	36574601	0	1	2303	0
chr1	36572477	36574499	BT20_Thompson.1009	0	.	36572477	36574499	0	1	2022	0
chr1	36572540	36574626	K562.1872	0	.	36572540	36574626	0	1	2086	0
chr1	36572560	36574604	MIP101.2814	0	.	36572560	36574604	0	1	2044	0
chr1	36572619	36575514	REMC_BreastStem.2268	0	.	36572619	36575514	0	1	2895	0
chr1	36574759	36575483	H1_polyA+.5157	0	.	36574759	36575483	0	1	724	0
chr1	36627098	36628727	K562.1899	0	.	36627098	36628727	0	1	1629	0
chr1	36627252	36628632	HeLa_polyA+_Chen.1467	0	.	36627252	36628632	0	1	1380	0
chr1	36627717	36628586	prostate_normal.2525	0	.	36627717	36628586	0	1	869	0
chr1	36627746	36628487	REMC_BreastStem.2277	0	.	36627746	36628487	0	1	741	0
chr1	36627873	36628668	H9_polyA+.2008	0	.	36627873	36628668	0	1	795	0
chr1	36627989	36629111	MDAMB231_Thompson.1150	0	.	36627989	36629111	0	1	1122	0
chr1	36627996	36629282	MDAMB468_Thompson.1103	0	.	36627996	36629282	0	1	1286	0
chr1	36628057	36628707	liver_polyA+.5023	0	.	36628057	36628707	0	1	650	0
chr1	36628060	36628634	T47D_Burge_Thompson.1285	0	.	36628060	36628634	0	1	574	0
chr1	36628170	36628618	A549_Myers.2899	0	.	36628170	36628618	0	1	448	0
chr1	36688800	36689787	Rinn_00000890	0	+	36688800	36689787	0	2	18,624	0,363
chr1	36690303	36691107	HepG2_Caltech_ENCODE.1579	0	.	36690303	36691107	0	1	804	0
chr1	36690319	36691229	B_cells_Cheung.6735	0	.	36690319	36691229	0	1	910	0
chr1	36690378	36691014	melanoma_Garraway_short_term_cultures.2954	0	.	36690378	36691014	0	1	636	0
chr1	36814258	36814603	A549_Myers.2930	0	.	36814258	36814603	0	1	345	0
chr1	36977253	36977625	B_Cells_Pritchard.87841	0	.	36977253	36977625	0	1	372	0
chr1	37373422	37374194	MeI_Garraway.824	0	.	37373422	37374194	0	1	772	0
chr1	37373433	37374149	T47D_Burge_Thompson.1288	0	.	37373433	37374149	0	1	716	0
chr1	37485676	37486256	BT474_Burge_Thompson.1408	0	.	37485676	37486256	0	1	580	0
chr1	37569554	37570208	prostate_carcinoma.3794	0	.	37569554	37570208	0	1	654	0
chr1	37570048	37570685	prostate_normal.2502	0	.	37570048	37570685	0	1	637	0
chr1	37570375	37571007	prostate_carcinoma.3795	0	.	37570375	37571007	0	1	632	0
chr1	37611407	37612286	prostate_carcinoma.3798	0	.	37611407	37612286	0	1	879	0
chr1	37667575	37667966	B_Cells_Pritchard.89561	0	.	37667575	37667966	0	1	391	0
chr1	37671023	37671692	REMC_LuminalBreast.4036	0	.	37671023	37671692	0	1	669	0
chr1	37672531	37672877	A549_Myers.2932	0	.	37672531	37672877	0	1	346	0
chr1	37672978	37673439	B_Cells_Pritchard.89581	0	.	37672978	37673439	0	1	461	0
chr1	37674665	37678015	REMC_LuminalBreast.4037	0	.	37674665	37678015	0	1	3350	0
chr1	37680181	37681657	REMC_MyoepithelialBreast.3666	0	.	37680181	37681657	0	1	1476	0
chr1	37680830	37681407	B_Cells_Pritchard.89615	0	.	37680830	37681407	0	1	577	0
chr1	37680897	37682171	REMC_LuminalBreast.4039	0	.	37680897	37682171	0	1	1274	0
chr1	37681173	37681609	prostate_carcinoma.3800	0	.	37681173	37681609	0	1	436	0
chr1	37684481	37686843	REMC_LuminalBreast.4525	0	.	37684481	37686843	0	1	2362	0
chr1	37687062	37689837	REMC_LuminalBreast.4526	0	.	37687062	37689837	0	1	2775	0
chr1	37687612	37690963	REMC_BreastStem.2302	0	-	37687612	37690963	0	2	521,536	0,2815
chr1	37687691	37688245	prostate_normal.2684	0	.	37687691	37688245	0	1	554	0
chr1	37691352	37710506	prostate_normal.2687	0	-	37691352	37710506	0	2	791,788	0,18366
chr1	37691555	37694105	REMC_MyoepithelialBreast.4100	0	.	37691555	37694105	0	1	2550	0
chr1	37691636	37694642	REMC_BreastStem.2303	0	.	37691636	37694642	0	1	3006	0
chr1	37692830	37694106	MIP101.2675	0	.	37692830	37694106	0	1	1276	0
chr1	37692853	37694181	MCF7_Burge_Thompson.1335	0	.	37692853	37694181	0	1	1328	0
chr1	37692858	37694099	CD4_Plagnol_resting.3226	0	.	37692858	37694099	0	1	1241	0
chr1	37692861	37694102	HeLa_polyA+_Chen.1474	0	.	37692861	37694102	0	1	1241	0
chr1	37692864	37694155	A549_Myers.2935	0	.	37692864	37694155	0	1	1291	0
chr1	37693064	37694577	prostate_normal.2688	0	-	37693064	37694577	0	2	1036,23	0,1490
chr1	37693064	37693932	BT20_Thompson.1019	0	.	37693064	37693932	0	1	868	0
chr1	37693066	37694219	CD4_Plagnol_activated.3236	0	.	37693066	37694219	0	1	1153	0
chr1	37693066	37712599	ENST00000424989	0	-	37693066	37712599	0	3	1034,93,268	0,1488,19265
chr1	37693066	37694226	MDAMB468_Thompson.1115	0	.	37693066	37694226	0	1	1160	0
chr1	37693068	37694099	BT474_Burge_Thompson.1419	0	.	37693068	37694099	0	1	1031	0
chr1	37693068	37694105	H1_polyA+.4851	0	.	37693068	37694105	0	1	1037	0
chr1	37693071	37694261	liver_polyA+.5164	0	.	37693071	37694261	0	1	1190	0
chr1	37693071	37694083	kidney_Gilad.3267	0	.	37693071	37694083	0	1	1012	0
chr1	37693071	37694206	T47D_Burge_Thompson.1291	0	.	37693071	37694206	0	1	1135	0
chr1	37693077	37694636	Rinn_00002336	0	-	37693077	37694636	0	2	1023,83	0,1476
chr1	37693080	37694263	melanoma_Garraway_short_term_cultures.2956	0	.	37693080	37694263	0	1	1183	0
chr1	37693084	37693764	MeI_Garraway.825	0	.	37693084	37693764	0	1	680	0
chr1	37693100	37712505	Rinn_00001457	0	-	37693100	37712505	0	2	1000,175	0,19230
chr1	37693101	37693862	MDAMB231_Thompson.977	0	.	37693101	37693862	0	1	761	0
chr1	37693148	37694039	MeWo_Garraway.1627	0	.	37693148	37694039	0	1	891	0
chr1	37693161	37694098	ZR751_Thompson.1167	0	.	37693161	37694098	0	1	937	0
chr1	37693320	37693647	lymph_node_Burge.2490	0	.	37693320	37693647	0	1	327	0
chr1	37693342	37694074	K562.1909	0	.	37693342	37694074	0	1	732	0
chr1	37695280	37695943	MIP101.2676	0	.	37695280	37695943	0	1	663	0
chr1	37697747	37701491	REMC_LuminalBreast.4780	0	.	37697747	37701491	0	1	3744	0
chr1	37701604	37707205	REMC_LuminalBreast.4781	0	.	37701604	37707205	0	1	5601	0
chr1	37702354	37707113	REMC_MyoepithelialBreast.4106	0	.	37702354	37707113	0	1	4759	0
chr1	37704451	37706532	B_cells_Cheung.6757	0	.	37704451	37706532	0	1	2081	0
chr1	37705107	37706141	prostate_normal.2698	0	.	37705107	37706141	0	1	1034	0
chr1	37705130	37706545	B_Cells_Pritchard.89717	0	.	37705130	37706545	0	1	1415	0
chr1	37705752	37706202	liver_polyA+.5170	0	.	37705752	37706202	0	1	450	0
chr1	37709472	37710442	prostate_normal.2686	0	.	37709472	37710442	0	1	970	0
chr1	37709510	37710780	B_Cells_Pritchard.89725	0	.	37709510	37710780	0	1	1270	0
chr1	37709572	37710982	melanoma_Garraway_short_term_cultures.2957	0	.	37709572	37710982	0	1	1410	0
chr1	37725142	37725877	B_Cells_Pritchard.89741	0	.	37725142	37725877	0	1	735	0
chr1	37757229	37760927	K562.1915	0	-	37757229	37760927	0	3	385,783,55	0,714,3643
chr1	37772504	37773203	kidney_Gilad.3277	0	.	37772504	37773203	0	1	699	0
chr1	37772641	37773187	MeI_Garraway.826	0	.	37772641	37773187	0	1	546	0
chr1	37772651	37773212	H9_polyA+.2043	0	.	37772651	37773212	0	1	561	0
chr1	37772705	37773223	A549_Myers.2938	0	.	37772705	37773223	0	1	518	0
chr1	37842213	37843581	REMC_LuminalBreast.4139	0	.	37842213	37843581	0	1	1368	0
chr1	37917579	37917914	B_Cells_Pritchard.90187	0	.	37917579	37917914	0	1	335	0
chr1	38187037	38189683	pHIT000001159	0	-	38187037	38189683	0	2	170,241	0,2405
chr1	38187148	38188461	REMC_LuminalBreast.4187	0	.	38187148	38188461	0	1	1313	0
chr1	38230223	38231111	CD4_Plagnol_activated.3334	0	.	38230223	38231111	0	1	888	0
chr1	38231641	38232178	CD4_Plagnol_resting.3309	0	.	38231641	38232178	0	1	537	0
chr1	38231660	38232138	K562.2151	0	.	38231660	38232138	0	1	478	0
chr1	38264875	38265738	B_Cells_Pritchard.90707	0	-	38264875	38265738	0	2	58,263	0,600
chr1	38264875	38266036	B_Cells_Pritchard.90709	0	+	38264875	38266036	0	1	1161	0
chr1	38264893	38265446	B_cells_Cheung.6983	0	.	38264893	38265446	0	1	553	0
chr1	38266185	38267560	B_Cells_Pritchard.90711	0	+	38266185	38267560	0	1	1375	0
chr1	38266185	38267560	B_Cells_Pritchard.90713	0	-	38266185	38267560	0	3	323,376,513	0,400,862
chr1	38268052	38270215	B_Cells_Pritchard.90721	0	-	38268052	38270215	0	5	266,260,218,316,410	0,365,708,1371,1753
chr1	38268793	38269462	B_cells_Cheung.6986	0	.	38268793	38269462	0	1	669	0
chr1	38269008	38270414	REMC_MyoepithelialBreast.3745	0	.	38269008	38270414	0	1	1406	0
chr1	38269342	38270223	REMC_LuminalBreast.4205	0	.	38269342	38270223	0	1	881	0
chr1	38269465	38270724	REMC_BreastStem.2204	0	.	38269465	38270724	0	1	1259	0
chr1	38269543	38270069	B_cells_Cheung.6987	0	.	38269543	38270069	0	1	526	0
chr1	38271824	38273923	REMC_MyoepithelialBreast.3746	0	.	38271824	38273923	0	1	2099	0
chr1	38271870	38274564	REMC_BreastStem.2206	0	.	38271870	38274564	0	1	2694	0
chr1	38272937	38275061	REMC_LuminalBreast.4206	0	.	38272937	38275061	0	1	2124	0
chr1	38274623	38276683	REMC_BreastStem.2207	0	.	38274623	38276683	0	1	2060	0
chr1	38275501	38276631	REMC_MyoepithelialBreast.3748	0	.	38275501	38276631	0	1	1130	0
chr1	38276083	38276733	REMC_LuminalBreast.4207	0	.	38276083	38276733	0	1	650	0
chr1	38276858	38277388	REMC_MyoepithelialBreast.3749	0	.	38276858	38277388	0	1	530	0
chr1	38286219	38287516	B_cells_Cheung.6997	0	.	38286219	38287516	0	1	1297	0
chr1	38286709	38287275	B_Cells_Pritchard.90763	0	.	38286709	38287275	0	1	566	0
chr1	38286852	38289947	H1_polyA+.4882	0	.	38286852	38289947	0	1	3095	0
chr1	38287413	38290680	B_Cells_Pritchard.90765	0	.	38287413	38290680	0	1	3267	0
chr1	38287570	38290929	B_cells_Cheung.6998	0	.	38287570	38290929	0	1	3359	0
chr1	38293326	38293764	B_cells_Cheung.7002	0	.	38293326	38293764	0	1	438	0
chr1	38293380	38293764	H1_polyA+.4885	0	.	38293380	38293764	0	1	384	0
chr1	38293397	38295022	B_Cells_Pritchard.90775	0	.	38293397	38295022	0	1	1625	0
chr1	38296662	38298012	B_cells_Cheung.7005	0	.	38296662	38298012	0	1	1350	0
chr1	38296663	38301549	H1_polyA+.4887	0	.	38296663	38301549	0	1	4886	0
chr1	38296677	38297634	B_Cells_Pritchard.90783	0	.	38296677	38297634	0	1	957	0
chr1	38301004	38301557	B_cells_Cheung.7008	0	.	38301004	38301557	0	1	553	0
chr1	38301008	38307746	B_Cells_Pritchard.90797	0	-	38301008	38307746	0	5	288,245,1246,376,1695	0,295,877,2519,5043
chr1	38301641	38303528	B_cells_Cheung.7009	0	.	38301641	38303528	0	1	1887	0
chr1	38301669	38303009	H1_polyA+.4888	0	.	38301669	38303009	0	1	1340	0
chr1	38301885	38307746	B_Cells_Pritchard.90795	0	+	38301885	38307746	0	2	1246,1695	0,4166
chr1	38303805	38305126	H1_polyA+.4890	0	.	38303805	38305126	0	1	1321	0
chr1	38303966	38305099	B_cells_Cheung.7011	0	.	38303966	38305099	0	1	1133	0
chr1	38308056	38312958	B_Cells_Pritchard.90817	0	.	38308056	38312958	0	1	4902	0
chr1	38311900	38312707	B_cells_Cheung.7017	0	.	38311900	38312707	0	1	807	0
chr1	38312077	38316352	H1_polyA+.4894	0	.	38312077	38316352	0	1	4275	0
chr1	38316577	38317449	B_cells_Cheung.7021	0	.	38316577	38317449	0	1	872	0
chr1	38316597	38318009	H1_polyA+.4895	0	.	38316597	38318009	0	1	1412	0
chr1	38316600	38317982	B_Cells_Pritchard.90821	0	.	38316600	38317982	0	1	1382	0
chr1	38317449	38318030	B_cells_Cheung.7022	0	.	38317449	38318030	0	1	581	0
chr1	38321245	38324723	B_cells_Cheung.7027	0	.	38321245	38324723	0	1	3478	0
chr1	38322148	38323471	B_Cells_Pritchard.90841	0	.	38322148	38323471	0	1	1323	0
chr1	38322454	38323462	H1_polyA+.4899	0	.	38322454	38323462	0	1	1008	0
chr1	38323704	38324885	B_Cells_Pritchard.90843	0	.	38323704	38324885	0	1	1181	0
chr1	38323731	38324851	H1_polyA+.4900	0	.	38323731	38324851	0	1	1120	0
chr1	38324834	38327175	B_cells_Cheung.7028	0	.	38324834	38327175	0	1	2341	0
chr1	38324851	38327674	H1_polyA+.4901	0	.	38324851	38327674	0	1	2823	0
chr1	38325078	38327778	B_Cells_Pritchard.90845	0	.	38325078	38327778	0	1	2700	0
chr1	38327308	38330283	B_cells_Cheung.7029	0	.	38327308	38330283	0	1	2975	0
chr1	38327873	38330126	H1_polyA+.4902	0	.	38327873	38330126	0	1	2253	0
chr1	38327902	38330249	B_Cells_Pritchard.90847	0	.	38327902	38330249	0	1	2347	0
chr1	38330337	38333420	H1_polyA+.4903	0	.	38330337	38333420	0	1	3083	0
chr1	38332422	38332886	B_cells_Cheung.7032	0	.	38332422	38332886	0	1	464	0
chr1	38332431	38334841	B_Cells_Pritchard.90851	0	.	38332431	38334841	0	1	2410	0
chr1	38334941	38337325	H1_polyA+.4905	0	.	38334941	38337325	0	1	2384	0
chr1	38335042	38337547	B_Cells_Pritchard.90853	0	+	38335042	38337547	0	2	1976,75	0,2430
chr1	38335060	38335943	B_cells_Cheung.7035	0	.	38335060	38335943	0	1	883	0
chr1	38341678	38342706	B_cells_Cheung.6995	0	.	38341678	38342706	0	1	1028	0
chr1	38342917	38348331	H1_polyA+.4909	0	.	38342917	38348331	0	1	5414	0
chr1	38342920	38347183	B_cells_Cheung.7041	0	.	38342920	38347183	0	1	4263	0
chr1	38342946	38354764	B_Cells_Pritchard.90861	0	+	38342946	38354764	0	3	1065,1144,6859	0,1206,4959
chr1	38342946	38354764	B_Cells_Pritchard.90863	0	-	38342946	38354764	0	3	1036,1246,6888	0,1104,4930
chr1	38344904	38345592	H9_polyA+.2088	0	.	38344904	38345592	0	1	688	0
chr1	38348432	38358149	H1_polyA+.4910	0	.	38348432	38358149	0	1	9717	0
chr1	38349009	38354789	B_cells_Cheung.7045	0	.	38349009	38354789	0	1	5780	0
chr1	38349281	38354769	prostate_carcinoma.3902	0	.	38349281	38354769	0	1	5488	0
chr1	38349960	38350713	H9_polyA+.2097	0	.	38349960	38350713	0	1	753	0
chr1	38351391	38352148	H9_polyA+.2099	0	.	38351391	38352148	0	1	757	0
chr1	38354981	38358195	B_cells_Cheung.7046	0	.	38354981	38358195	0	1	3214	0
chr1	38354991	38358114	B_Cells_Pritchard.90889	0	.	38354991	38358114	0	1	3123	0
chr1	38355015	38357710	prostate_carcinoma.3903	0	.	38355015	38357710	0	1	2695	0
chr1	38355535	38356854	prostate_normal.2555	0	.	38355535	38356854	0	1	1319	0
chr1	38355893	38357034	H9_polyA+.2103	0	.	38355893	38357034	0	1	1141	0
chr1	38357791	38358102	prostate_carcinoma.3904	0	.	38357791	38358102	0	1	311	0
chr1	38358616	38359410	B_cells_Cheung.7048	0	.	38358616	38359410	0	1	794	0
chr1	38358630	38359304	H1_polyA+.4911	0	.	38358630	38359304	0	1	674	0
chr1	38358659	38359978	B_Cells_Pritchard.90893	0	.	38358659	38359978	0	1	1319	0
chr1	38431533	38432872	H1_polyA+.4913	0	.	38431533	38432872	0	1	1339	0
chr1	38447218	38450712	HIT000097317	0	-	38447218	38450712	0	3	1863,89,356	0,2774,3138
chr1	38447291	38453026	Rinn_00000505	0	-	38447291	38453026	0	4	1790,90,355,52	0,2700,3064,5683
chr1	38447292	38453026	ENST00000431311	0	-	38447292	38453026	0	4	1789,89,354,51	0,2700,3064,5683
chr1	38447542	38448311	H1_polyA+.4914	0	.	38447542	38448311	0	1	769	0
chr1	38449412	38451135	Rinn_00001458	0	-	38449412	38451135	0	2	669,780	0,943
chr1	38450088	38451016	Rinn_00001459	0	-	38450088	38451016	0	2	543,34	0,894
chr1	38466295	38467837	H1_polyA+.4915	0	.	38466295	38467837	0	1	1542	0
chr1	38476073	38494446	H1_polyA+.4944	0	-	38476073	38494446	0	2	459,2351	0,16022
chr1	38484036	38489984	H1_polyA+.4947	0	.	38484036	38489984	0	1	5948	0
chr1	38490610	38491859	H1_polyA+.4948	0	.	38490610	38491859	0	1	1249	0
chr1	38494564	38496263	H1_polyA+.4949	0	.	38494564	38496263	0	1	1699	0
chr1	38500286	38505911	H1_polyA+.4951	0	.	38500286	38505911	0	1	5625	0
chr1	38508243	38509097	H1_polyA+.4953	0	.	38508243	38509097	0	1	854	0
chr1	38617566	38618437	H1_polyA+.4960	0	.	38617566	38618437	0	1	871	0
chr1	38664050	38665212	H1_polyA+.4973	0	.	38664050	38665212	0	1	1162	0
chr1	38665374	38666373	H1_polyA+.4975	0	.	38665374	38666373	0	1	999	0
chr1	38668925	38670580	H1_polyA+.4979	0	.	38668925	38670580	0	1	1655	0
chr1	38675930	38677868	H1_polyA+.4983	0	.	38675930	38677868	0	1	1938	0
chr1	38686430	38688702	H1_polyA+.4987	0	.	38686430	38688702	0	1	2272	0
chr1	38688805	38692517	H1_polyA+.4988	0	.	38688805	38692517	0	1	3712	0
chr1	38693887	38696989	H1_polyA+.4967	0	.	38693887	38696989	0	1	3102	0
chr1	38713884	38716526	B_cells_Cheung.7059	0	.	38713884	38716526	0	1	2642	0
chr1	38730266	38730803	B_Cells_Pritchard.91879	0	.	38730266	38730803	0	1	537	0
chr1	38793310	38796078	H1_polyA+.4968	0	-	38793310	38796078	0	2	429,1800	0,968
chr1	38793310	38796078	H1_polyA+.4969	0	.	38793310	38796078	0	1	2768	0
chr1	38793478	38794732	B_cells_Cheung.7070	0	.	38793478	38794732	0	1	1254	0
chr1	38793846	38794659	B_Cells_Pritchard.92049	0	.	38793846	38794659	0	1	813	0
chr1	38796210	38798985	H1_polyA+.4970	0	.	38796210	38798985	0	1	2775	0
chr1	38797058	38801228	B_cells_Cheung.7073	0	.	38797058	38801228	0	1	4170	0
chr1	38797177	38801574	B_Cells_Pritchard.92061	0	.	38797177	38801574	0	1	4397	0
chr1	38799087	38800291	H1_polyA+.4971	0	.	38799087	38800291	0	1	1204	0
chr1	38802657	38803087	B_cells_Cheung.7075	0	.	38802657	38803087	0	1	430	0
chr1	39019202	39019768	B_Cells_Pritchard.92705	0	.	39019202	39019768	0	1	566	0
chr1	39045271	39046010	B_Cells_Pritchard.92809	0	.	39045271	39046010	0	1	739	0
chr1	39182864	39183686	REMC_BreastStem.2402	0	.	39182864	39183686	0	1	822	0
chr1	39183048	39183916	B_Cells_Pritchard.93235	0	.	39183048	39183916	0	1	868	0
chr1	39184904	39186295	REMC_LuminalBreast.5090	0	.	39184904	39186295	0	1	1391	0
chr1	39184904	39186052	REMC_BreastStem.2403	0	.	39184904	39186052	0	1	1148	0
chr1	39187197	39188875	REMC_LuminalBreast.5091	0	.	39187197	39188875	0	1	1678	0
chr1	39223584	39224356	REMC_LuminalBreast.4227	0	.	39223584	39224356	0	1	772	0
chr1	39223709	39224756	REMC_BreastStem.2409	0	.	39223709	39224756	0	1	1047	0
chr1	39281441	39282676	REMC_LuminalBreast.4240	0	.	39281441	39282676	0	1	1235	0
chr1	39281574	39283846	B_cells_Cheung.7197	0	.	39281574	39283846	0	1	2272	0
chr1	39281754	39283281	kidney_Gilad.3382	0	-	39281754	39283281	0	2	395,639	0,888
chr1	39281820	39282130	prostate_normal.2596	0	.	39281820	39282130	0	1	310	0
chr1	39282249	39283985	H1_polyA+.5030	0	.	39282249	39283985	0	1	1736	0
chr1	39282296	39283345	CD4_Plagnol_activated.3391	0	.	39282296	39283345	0	1	1049	0
chr1	39282327	39283796	H9_polyA+.2138	0	.	39282327	39283796	0	1	1469	0
chr1	39282772	39283836	melanoma_Garraway_short_term_cultures.3081	0	.	39282772	39283836	0	1	1064	0
chr1	39282785	39284403	liver_polyA+.5258	0	-	39282785	39284403	0	2	621,38	0,1580
chr1	39282801	39283182	MCF7_Burge_Thompson.1391	0	.	39282801	39283182	0	1	381	0
chr1	39284821	39295556	REMC_MyoepithelialBreast.4235	0	.	39284821	39295556	0	1	10735	0
chr1	39284886	39286698	B_cells_Cheung.7199	0	+	39284886	39286698	0	2	572,549	0,1263
chr1	39296971	39299696	REMC_MyoepithelialBreast.4240	0	.	39296971	39299696	0	1	2725	0
chr1	39298976	39299676	B_cells_Cheung.7208	0	.	39298976	39299676	0	1	700	0
chr1	39299197	39299705	H1_polyA+.5037	0	.	39299197	39299705	0	1	508	0
chr1	39299815	39306067	REMC_LuminalBreast.4244	0	.	39299815	39306067	0	1	6252	0
chr1	39302615	39304879	REMC_MyoepithelialBreast.4243	0	.	39302615	39304879	0	1	2264	0
chr1	39303314	39304596	REMC_BreastStem.2223	0	.	39303314	39304596	0	1	1282	0
chr1	39309523	39311168	REMC_LuminalBreast.4247	0	.	39309523	39311168	0	1	1645	0
chr1	39312498	39314163	REMC_LuminalBreast.4249	0	.	39312498	39314163	0	1	1665	0
chr1	39314425	39315203	prostate_carcinoma.3957	0	.	39314425	39315203	0	1	778	0
chr1	39847577	39849260	REMC_BreastStem.2283	0	.	39847577	39849260	0	1	1683	0
chr1	39847773	39848142	testes_Burge.2737	0	.	39847773	39848142	0	1	369	0
chr1	39847827	39848781	adipose_Burge.2052	0	.	39847827	39848781	0	1	954	0
chr1	39848129	39848540	B_Cells_Pritchard.95107	0	.	39848129	39848540	0	1	411	0
chr1	39848202	39848583	testes_Burge.2736	0	.	39848202	39848583	0	1	381	0
chr1	39854144	39854600	liver_polyA+.5409	0	.	39854144	39854600	0	1	456	0
chr1	39890292	39893282	B_cells_Cheung.7280	0	.	39890292	39893282	0	1	2990	0
chr1	39890319	39893101	skeletal_muscle_Burge.1551	0	.	39890319	39893101	0	1	2782	0
chr1	39890329	39893273	brain_AmbionMAQC.2158	0	.	39890329	39893273	0	1	2944	0
chr1	39891043	39891731	prostate_carcinoma.4107	0	.	39891043	39891731	0	1	688	0
chr1	39891121	39892609	melanoma_Garraway_short_term_cultures.3159	0	.	39891121	39892609	0	1	1488	0
chr1	39891263	39891862	CD4_Plagnol_resting.3423	0	.	39891263	39891862	0	1	599	0
chr1	39894300	39895819	heart_Burge.1506	0	.	39894300	39895819	0	1	1519	0
chr1	39894619	39895660	CD4_Plagnol_resting.3424	0	.	39894619	39895660	0	1	1041	0
chr1	39912152	39913200	CD4_Plagnol_resting.3426	0	.	39912152	39913200	0	1	1048	0
chr1	39912610	39913188	brain_AmbionMAQC.2159	0	.	39912610	39913188	0	1	578	0
chr1	39915074	39915725	brain_AmbionMAQC.2161	0	.	39915074	39915725	0	1	651	0
chr1	40027234	40028519	HIT000096489	0	+	40027234	40028519	0	1	1285	0
chr1	40040670	40041359	K562.2044	0	.	40040670	40041359	0	1	689	0
chr1	40040680	40041436	melanoma_Garraway_short_term_cultures.3172	0	.	40040680	40041436	0	1	756	0
chr1	40040685	40041622	B_cells_Cheung.7315	0	.	40040685	40041622	0	1	937	0
chr1	40040689	40041388	MIP101.2934	0	.	40040689	40041388	0	1	699	0
chr1	40040738	40042340	REMC_LuminalBreast.4305	0	.	40040738	40042340	0	1	1602	0
chr1	40040760	40041406	B_Cells_Pritchard.95551	0	+	40040760	40041406	0	1	646	0
chr1	40040842	40041415	prostate_carcinoma.4123	0	.	40040842	40041415	0	1	573	0
chr1	40041683	40044251	B_cells_Cheung.7316	0	.	40041683	40044251	0	1	2568	0
chr1	40042595	40043557	REMC_LuminalBreast.4306	0	.	40042595	40043557	0	1	962	0
chr1	40051046	40051774	B_cells_Cheung.7324	0	.	40051046	40051774	0	1	728	0
chr1	40071568	40073055	B_cells_Cheung.7329	0	.	40071568	40073055	0	1	1487	0
chr1	40074419	40076829	B_Cells_Pritchard.95669	0	-	40074419	40076829	0	5	488,235,285,407,710	0,583,899,1242,1700
chr1	40075388	40076358	REMC_MyoepithelialBreast.3851	0	.	40075388	40076358	0	1	970	0
chr1	40075535	40076585	B_cells_Cheung.7332	0	.	40075535	40076585	0	1	1050	0
chr1	40075552	40078018	prostate_carcinoma.4142	0	.	40075552	40078018	0	1	2466	0
chr1	40075890	40076882	ZR751_Thompson.1260	0	.	40075890	40076882	0	1	992	0
chr1	40185854	40186474	B_cells_Cheung.7347	0	.	40185854	40186474	0	1	620	0
chr1	40210516	40211298	REMC_LuminalBreast.4316	0	.	40210516	40211298	0	1	782	0
chr1	40211447	40215977	REMC_MyoepithelialBreast.3902	0	.	40211447	40215977	0	1	4530	0
chr1	40213539	40214314	REMC_BreastStem.2349	0	.	40213539	40214314	0	1	775	0
chr1	40216331	40219476	REMC_MyoepithelialBreast.3903	0	.	40216331	40219476	0	1	3145	0
chr1	40219228	40220879	REMC_LuminalBreast.4317	0	.	40219228	40220879	0	1	1651	0
chr1	40219559	40220965	REMC_MyoepithelialBreast.3904	0	.	40219559	40220965	0	1	1406	0
chr1	40223558	40224532	REMC_BreastStem.2298	0	.	40223558	40224532	0	1	974	0
chr1	40223558	40224535	REMC_MyoepithelialBreast.3905	0	.	40223558	40224535	0	1	977	0
chr1	40225026	40226090	REMC_MyoepithelialBreast.3906	0	.	40225026	40226090	0	1	1064	0
chr1	40226103	40226596	REMC_BreastStem.2299	0	.	40226103	40226596	0	1	493	0
chr1	40480496	40481549	REMC_BreastStem.2319	0	.	40480496	40481549	0	1	1053	0
chr1	40483212	40483812	B_cells_Cheung.7489	0	.	40483212	40483812	0	1	600	0
chr1	40535003	40536245	B_cells_Cheung.7518	0	.	40535003	40536245	0	1	1242	0
chr1	40535081	40536327	HepG2_Caltech_ENCODE.1682	0	.	40535081	40536327	0	1	1246	0
chr1	40535170	40536183	melanoma_Garraway_short_term_cultures.3245	0	.	40535170	40536183	0	1	1013	0
chr1	40665595	40666762	B_cells_Cheung.7519	0	.	40665595	40666762	0	1	1167	0
chr1	40666133	40668264	B_Cells_Pritchard.98135	0	-	40666133	40668264	0	1	2131	0
chr1	40676767	40677925	REMC_MyoepithelialBreast.3938	0	.	40676767	40677925	0	1	1158	0
chr1	40680282	40681003	B_Cells_Pritchard.97701	0	-	40680282	40681003	0	1	721	0
chr1	40683386	40684670	REMC_MyoepithelialBreast.3940	0	.	40683386	40684670	0	1	1284	0
chr1	40683466	40684643	B_cells_Cheung.7538	0	.	40683466	40684643	0	1	1177	0
chr1	40683527	40684230	B_Cells_Pritchard.97711	0	.	40683527	40684230	0	1	703	0
chr1	40684814	40685714	B_Cells_Pritchard.97715	0	.	40684814	40685714	0	1	900	0
chr1	40738096	40740532	H1_polyA+.5269	0	.	40738096	40740532	0	1	2436	0
chr1	40739487	40740493	prostate_carcinoma.4227	0	.	40739487	40740493	0	1	1006	0
chr1	40739566	40740551	HepG2_Caltech_ENCODE.1695	0	.	40739566	40740551	0	1	985	0
chr1	40739602	40740414	CD4_Plagnol_activated.3536	0	.	40739602	40740414	0	1	812	0
chr1	40739765	40741170	liver_polyA+.5669	0	+	40739765	40741170	0	2	741,218	0,1187
chr1	40745278	40745615	H1_rRNA-depleted_UCSD_REMC.3900	0	.	40745278	40745615	0	1	337	0
chr1	40760078	40764568	B_Cells_Pritchard.97835	0	+	40760078	40764568	0	2	194,517	0,3973
chr1	40763958	40764772	H1_polyA+.5280	0	.	40763958	40764772	0	1	814	0
chr1	40764051	40764534	B_cells_Cheung.7574	0	.	40764051	40764534	0	1	483	0
chr1	40907056	40907357	A549_Myers.3197	0	.	40907056	40907357	0	1	301	0
chr1	40924940	40925248	CD4_Plagnol_resting.3544	0	.	40924940	40925248	0	1	308	0
chr1	40924942	40925598	HeLa_polyA+_Chen.1613	0	.	40924942	40925598	0	1	656	0
chr1	40924946	40925248	T47D_Burge_Thompson.1439	0	.	40924946	40925248	0	1	302	0
chr1	40924954	40925504	BT20_Thompson.1108	0	.	40924954	40925504	0	1	550	0
chr1	41013871	41015096	B_cells_Cheung.7618	0	.	41013871	41015096	0	1	1225	0
chr1	41014721	41016620	REMC_LuminalBreast.4414	0	.	41014721	41016620	0	1	1899	0
chr1	41017877	41019055	REMC_MyoepithelialBreast.3992	0	.	41017877	41019055	0	1	1178	0
chr1	41087822	41089140	REMC_LuminalBreast.4421	0	.	41087822	41089140	0	1	1318	0
chr1	41119424	41120023	A549_Myers.3215	0	.	41119424	41120023	0	1	599	0
chr1	41203298	41204831	Rinn_00001475	0	-	41203298	41204831	0	2	36,971	0,562
chr1	41261333	41262929	CD4_Plagnol_resting.3642	0	.	41261333	41262929	0	1	1596	0
chr1	41261451	41262241	K562.2190	0	.	41261451	41262241	0	1	790	0
chr1	41501791	41502804	melanoma_Garraway_short_term_cultures.3354	0	.	41501791	41502804	0	1	1013	0
chr1	41518586	41519080	H1_polyA+.5348	0	.	41518586	41519080	0	1	494	0
chr1	41521095	41600058	pHIT000070345	0	-	41521095	41600058	0	5	102,93,141,58,69	0,2813,11268,31380,78894
chr1	41540243	41542292	H1_polyA+.5349	0	.	41540243	41542292	0	1	2049	0
chr1	41553468	41554473	H1_polyA+.5351	0	.	41553468	41554473	0	1	1005	0
chr1	41560483	41560940	B_Cells_Pritchard.99845	0	.	41560483	41560940	0	1	457	0
chr1	41565342	41566186	prostate_carcinoma.4297	0	.	41565342	41566186	0	1	844	0
chr1	41566450	41567249	prostate_carcinoma.4298	0	.	41566450	41567249	0	1	799	0
chr1	41567585	41568035	BT474_Burge_Thompson.1587	0	.	41567585	41568035	0	1	450	0
chr1	41569639	41570368	H1_polyA+.5353	0	.	41569639	41570368	0	1	729	0
chr1	41583859	41584702	melanoma_Garraway_short_term_cultures.3357	0	.	41583859	41584702	0	1	843	0
chr1	41599675	41600072	A549_Myers.3239	0	.	41599675	41600072	0	1	397	0
chr1	41622818	41623507	BT474_Burge_Thompson.1588	0	.	41622818	41623507	0	1	689	0
chr1	41623407	41624427	BT20_Thompson.1155	0	.	41623407	41624427	0	1	1020	0
chr1	41624022	41624373	A549_Myers.3247	0	.	41624022	41624373	0	1	351	0
chr1	41624116	41624982	REMC_LuminalBreast.4444	0	.	41624116	41624982	0	1	866	0
chr1	41624754	41637489	khalil_26	0	.	41624754	41637489	0	9	149,215,117,157,323,209,172,771,93	0,1224,4889,5109,5855,6794,8687,8942,12642
chr1	41633947	41634279	A549_Myers.3248	0	.	41633947	41634279	0	1	332	0
chr1	41637484	41639093	BT20_Thompson.1156	0	.	41637484	41639093	0	1	1609	0
chr1	41649450	41650094	BT20_Thompson.1119	0	.	41649450	41650094	0	1	644	0
chr1	41662144	41663632	BT20_Thompson.1122	0	.	41662144	41663632	0	1	1488	0
chr1	41662550	41663228	prostate_normal.2820	0	.	41662550	41663228	0	1	678	0
chr1	41665374	41668292	BT20_Thompson.1123	0	.	41665374	41668292	0	1	2918	0
chr1	41670588	41671542	BT20_Thompson.1134	0	.	41670588	41671542	0	1	954	0
chr1	41670954	41671746	A549_Myers.3252	0	.	41670954	41671746	0	1	792	0
chr1	41672185	41674181	BT20_Thompson.1135	0	.	41672185	41674181	0	1	1996	0
chr1	41687448	41689449	BT474_Burge_Thompson.1598	0	.	41687448	41689449	0	1	2001	0
chr1	41687448	41693575	BT474_Burge_Thompson.1600	0	+	41687448	41693575	0	3	917,785,47	0,4986,6080
chr1	41688143	41693216	prostate_normal.2823	0	+	41688143	41693216	0	2	222,782	0,4291
chr1	41689246	41689888	prostate_carcinoma.4318	0	.	41689246	41689888	0	1	642	0
chr1	41691937	41693216	prostate_normal.2822	0	.	41691937	41693216	0	1	1279	0
chr1	41693371	41699278	prostate_carcinoma.4315	0	.	41693371	41699278	0	1	5907	0
chr1	41693526	41694361	melanoma_Garraway_short_term_cultures.3362	0	.	41693526	41694361	0	1	835	0
chr1	41693596	41694367	prostate_normal.2826	0	.	41693596	41694367	0	1	771	0
chr1	41693765	41695744	BT474_Burge_Thompson.1602	0	.	41693765	41695744	0	1	1979	0
chr1	41694713	41695627	prostate_normal.2827	0	.	41694713	41695627	0	1	914	0
chr1	41695259	41695569	A549_Myers.3253	0	.	41695259	41695569	0	1	310	0
chr1	41695793	41703446	prostate_carcinoma.4317	0	+	41695793	41703446	0	3	2830,168,650	0,3645,7003
chr1	41695817	41696566	BT474_Burge_Thompson.1603	0	.	41695817	41696566	0	1	749	0
chr1	41695866	41696537	prostate_normal.2828	0	.	41695866	41696537	0	1	671	0
chr1	41696636	41698967	BT474_Burge_Thompson.1604	0	.	41696636	41698967	0	1	2331	0
chr1	41696861	41698593	BT20_Thompson.1142	0	.	41696861	41698593	0	1	1732	0
chr1	41697452	41698981	prostate_normal.2830	0	.	41697452	41698981	0	1	1529	0
chr1	41699679	41701286	BT20_Thompson.1144	0	.	41699679	41701286	0	1	1607	0
chr1	41700024	41700740	prostate_normal.2832	0	.	41700024	41700740	0	1	716	0
chr1	41700124	41700914	prostate_carcinoma.4320	0	.	41700124	41700914	0	1	790	0
chr1	41701271	41703446	prostate_carcinoma.4316	0	.	41701271	41703446	0	1	2175	0
chr1	41701424	41703322	BT20_Thompson.1140	0	.	41701424	41703322	0	1	1898	0
chr1	41701442	41703113	prostate_normal.2825	0	.	41701442	41703113	0	1	1671	0
chr1	41701469	41703094	BT474_Burge_Thompson.1599	0	.	41701469	41703094	0	1	1625	0
chr1	41701469	41702576	melanoma_Garraway_short_term_cultures.3363	0	.	41701469	41702576	0	1	1107	0
chr1	41726278	41726709	B_Cells_Pritchard.100373	0	.	41726278	41726709	0	1	431	0
chr1	41730278	41732284	REMC_LuminalBreast.32745	0	.	41730278	41732284	0	1	2006	0
chr1	41731412	41743359	khalil_27	0	.	41731412	41743359	0	9	281,383,69,355,233,15,419,297,301	0,3150,4122,5534,7326,8184,8594,9356,11646
chr1	41732982	41734115	REMC_LuminalBreast.32746	0	.	41732982	41734115	0	1	1133	0
chr1	41734547	41734901	A549_Myers.3261	0	.	41734547	41734901	0	1	354	0
chr1	41735112	41735744	REMC_LuminalBreast.32747	0	.	41735112	41735744	0	1	632	0
chr1	41735146	41735846	REMC_MyoepithelialBreast.4029	0	.	41735146	41735846	0	1	700	0
chr1	41735341	41735763	A549_Myers.3262	0	.	41735341	41735763	0	1	422	0
chr1	41735955	41737088	REMC_MyoepithelialBreast.4030	0	.	41735955	41737088	0	1	1133	0
chr1	41736567	41737849	REMC_LuminalBreast.32748	0	.	41736567	41737849	0	1	1282	0
chr1	41737162	41737576	A549_Myers.3264	0	.	41737162	41737576	0	1	414	0
chr1	42274343	42274715	B_cells_Cheung.7818	0	.	42274343	42274715	0	1	372	0
chr1	42274354	42275375	REMC_MyoepithelialBreast.4090	0	.	42274354	42275375	0	1	1021	0
chr1	42274413	42274994	testes_Burge.2883	0	.	42274413	42274994	0	1	581	0
chr1	42380294	42381524	REMC_MyoepithelialBreast.4091	0	.	42380294	42381524	0	1	1230	0
chr1	42384405	42384982	A549_Myers.3300	0	.	42384405	42384982	0	1	577	0
chr1	42404766	42405125	REMC_MyoepithelialBreast.4094	0	.	42404766	42405125	0	1	359	0
chr1	42407184	42410958	REMC_MyoepithelialBreast.4096	0	.	42407184	42410958	0	1	3774	0
chr1	42576775	42577598	REMC_MyoepithelialBreast.4118	0	.	42576775	42577598	0	1	823	0
chr1	43092754	43093086	H1_polyA+.5626	0	.	43092754	43093086	0	1	332	0
chr1	43093241	43093671	K562.2219	0	.	43093241	43093671	0	1	430	0
chr1	43093270	43093666	MIP101.3303	0	.	43093270	43093666	0	1	396	0
chr1	43096268	43097739	H1_polyA+.5628	0	.	43096268	43097739	0	1	1471	0
chr1	43096269	43096702	B_cells_Cheung.8030	0	.	43096269	43096702	0	1	433	0
chr1	43096302	43097992	B_Cells_Pritchard.103905	0	.	43096302	43097992	0	1	1690	0
chr1	43096832	43097688	REMC_MyoepithelialBreast.4175	0	.	43096832	43097688	0	1	856	0
chr1	43096893	43097979	REMC_LuminalBreast.4631	0	.	43096893	43097979	0	1	1086	0
chr1	43098324	43102767	B_Cells_Pritchard.103919	0	+	43098324	43102767	0	2	4032,66	0,4377
chr1	43099301	43102170	H1_polyA+.5505	0	.	43099301	43102170	0	1	2869	0
chr1	43101436	43102014	B_cells_Cheung.8036	0	.	43101436	43102014	0	1	578	0
chr1	43132693	43137277	REMC_LuminalBreast.4634	0	.	43132693	43137277	0	1	4584	0
chr1	43133976	43135863	REMC_MyoepithelialBreast.4178	0	.	43133976	43135863	0	1	1887	0
chr1	43134007	43135045	REMC_BreastStem.2444	0	.	43134007	43135045	0	1	1038	0
chr1	43137320	43139077	REMC_BreastStem.2446	0	.	43137320	43139077	0	1	1757	0
chr1	43137822	43138711	REMC_MyoepithelialBreast.4181	0	.	43137822	43138711	0	1	889	0
chr1	43137889	43139245	REMC_LuminalBreast.4636	0	.	43137889	43139245	0	1	1356	0
chr1	43143168	43147923	REMC_MyoepithelialBreast.4184	0	.	43143168	43147923	0	1	4755	0
chr1	43143608	43148286	REMC_LuminalBreast.4639	0	.	43143608	43148286	0	1	4678	0
chr1	43151562	43159412	REMC_LuminalBreast.4642	0	.	43151562	43159412	0	1	7850	0
chr1	43151959	43153885	REMC_MyoepithelialBreast.4187	0	.	43151959	43153885	0	1	1926	0
chr1	43155145	43155623	MCF10A_Thompson.1136	0	.	43155145	43155623	0	1	478	0
chr1	43161028	43161841	B_Cells_Pritchard.104039	0	.	43161028	43161841	0	1	813	0
chr1	43161088	43161852	MCF10A_Thompson.1137	0	.	43161088	43161852	0	1	764	0
chr1	43198576	43199074	A549_Myers.3375	0	.	43198576	43199074	0	1	498	0
chr1	43198607	43199383	K562.2335	0	.	43198607	43199383	0	1	776	0
chr1	43198914	43199997	prostate_carcinoma.4535	0	.	43198914	43199997	0	1	1083	0
chr1	43204231	43204532	H1_polyA+.5522	0	.	43204231	43204532	0	1	301	0
chr1	43204702	43205048	H1_polyA+.5523	0	.	43204702	43205048	0	1	346	0
chr1	43204706	43206151	B_cells_Cheung.8083	0	.	43204706	43206151	0	1	1445	0
chr1	43210104	43217723	H9_polyA+.2386	0	-	43210104	43217723	0	2	419,1106	0,6513
chr1	43210431	43214444	prostate_carcinoma.4539	0	+	43210431	43214444	0	2	49,977	0,3036
chr1	43211458	43214434	B_Cells_Pritchard.105939	0	-	43211458	43214434	0	1	2976	0
chr1	43211556	43212107	H9_polyA+.2387	0	.	43211556	43212107	0	1	551	0
chr1	43211706	43212469	melanoma_Garraway_short_term_cultures.3500	0	.	43211706	43212469	0	1	763	0
chr1	43212064	43212494	prostate_carcinoma.4537	0	.	43212064	43212494	0	1	430	0
chr1	43212231	43214434	B_Cells_Pritchard.105941	0	+	43212231	43214434	0	1	2203	0
chr1	43212643	43214427	H9_polyA+.2389	0	.	43212643	43214427	0	1	1784	0
chr1	43212800	43214444	prostate_carcinoma.4540	0	.	43212800	43214444	0	1	1644	0
chr1	43213353	43214211	HepG2_Caltech_ENCODE.1800	0	.	43213353	43214211	0	1	858	0
chr1	43213383	43214352	prostate_normal.2938	0	.	43213383	43214352	0	1	969	0
chr1	43213388	43213761	H1_rRNA-depleted_UCSD_REMC.4150	0	.	43213388	43213761	0	1	373	0
chr1	43213471	43214021	brain_AmbionMAQC.2355	0	.	43213471	43214021	0	1	550	0
chr1	43214610	43222099	B_Cells_Pritchard.104105	0	-	43214610	43222099	0	2	3311,757	0,6732
chr1	43215637	43217754	B_cells_Cheung.8058	0	.	43215637	43217754	0	1	2117	0
chr1	43215640	43217724	K562.2340	0	.	43215640	43217724	0	1	2084	0
chr1	43215660	43217613	melanoma_Garraway_short_term_cultures.3503	0	.	43215660	43217613	0	1	1953	0
chr1	43215861	43217723	prostate_carcinoma.4544	0	-	43215861	43217723	0	2	216,1388	0,474
chr1	43216164	43217093	MIP101.3195	0	.	43216164	43217093	0	1	929	0
chr1	43216195	43216612	H9_polyA+.2390	0	.	43216195	43216612	0	1	417	0
chr1	43216254	43217225	BT474_Burge_Thompson.1684	0	.	43216254	43217225	0	1	971	0
chr1	43216310	43217391	prostate_normal.2939	0	.	43216310	43217391	0	1	1081	0
chr1	43217002	43218313	khalil_29	0	.	43217002	43218313	0	2	221,763	0,548
chr1	43217259	43217729	H1_rRNA-depleted_UCSD_REMC.4156	0	.	43217259	43217729	0	1	470	0
chr1	43217317	43217684	BT474_Burge_Thompson.1685	0	.	43217317	43217684	0	1	367	0
chr1	43221518	43223164	H1_rRNA-depleted_UCSD_REMC.4158	0	+	43221518	43223164	0	2	51,481	0,1165
chr1	43222682	43223963	B_cells_Cheung.8061	0	.	43222682	43223963	0	1	1281	0
chr1	43222717	43223965	B_Cells_Pritchard.104107	0	.	43222717	43223965	0	1	1248	0
chr1	43222831	43223751	brain_AmbionMAQC.2357	0	.	43222831	43223751	0	1	920	0
chr1	43227026	43228190	H1_polyA+.5530	0	.	43227026	43228190	0	1	1164	0
chr1	43230045	43233759	H1_polyA+.5532	0	.	43230045	43233759	0	1	3714	0
chr1	43231505	43232698	prostate_carcinoma.4552	0	.	43231505	43232698	0	1	1193	0
chr1	43231512	43232684	B_cells_Cheung.8068	0	.	43231512	43232684	0	1	1172	0
chr1	43231536	43232404	K562.2241	0	.	43231536	43232404	0	1	868	0
chr1	43231560	43232650	prostate_normal.2946	0	.	43231560	43232650	0	1	1090	0
chr1	43233907	43234308	B_cells_Cheung.8070	0	.	43233907	43234308	0	1	401	0
chr1	43330824	43332256	H1_polyA+.5536	0	.	43330824	43332256	0	1	1432	0
chr1	43333344	43334374	H1_rRNA-depleted_UCSD_REMC.4164	0	.	43333344	43334374	0	1	1030	0
chr1	43333353	43334357	H1_polyA+.5538	0	.	43333353	43334357	0	1	1004	0
chr1	43334461	43337422	H1_polyA+.5539	0	.	43334461	43337422	0	1	2961	0
chr1	43344379	43344740	prostate_carcinoma.4555	0	.	43344379	43344740	0	1	361	0
chr1	43345576	43345934	H1_polyA+.5540	0	.	43345576	43345934	0	1	358	0
chr1	43345699	43347068	MCF7_Burge_Thompson.1570	0	.	43345699	43347068	0	1	1369	0
chr1	43364727	43371787	HepG2_Caltech_ENCODE.1805	0	+	43364727	43371787	0	2	338,3156	0,3904
chr1	43365797	43366554	H1_polyA+.5552	0	.	43365797	43366554	0	1	757	0
chr1	43366922	43378722	H1_polyA+.5546	0	.	43366922	43378722	0	1	11800	0
chr1	43367431	43371787	HepG2_Caltech_ENCODE.1806	0	.	43367431	43371787	0	1	4356	0
chr1	43369109	43370170	H9_polyA+.2401	0	.	43369109	43370170	0	1	1061	0
chr1	43369188	43369556	NEC_from_H9.3803	0	.	43369188	43369556	0	1	368	0
chr1	43373111	43378606	HepG2_Caltech_ENCODE.1810	0	.	43373111	43378606	0	1	5495	0
chr1	43374545	43375385	H9_polyA+.2403	0	.	43374545	43375385	0	1	840	0
chr1	43374633	43375536	MIP101.3202	0	.	43374633	43375536	0	1	903	0
chr1	43378745	43381117	HepG2_Caltech_ENCODE.1811	0	.	43378745	43381117	0	1	2372	0
chr1	43378799	43379553	prostate_carcinoma.4607	0	.	43378799	43379553	0	1	754	0
chr1	43379141	43379610	H9_polyA+.2405	0	.	43379141	43379610	0	1	469	0
chr1	43379219	43379572	H1_rRNA-depleted_UCSD_REMC.4175	0	.	43379219	43379572	0	1	353	0
chr1	43379633	43381164	prostate_carcinoma.4608	0	.	43379633	43381164	0	1	1531	0
chr1	43505452	43506413	H1_polyA+.5606	0	.	43505452	43506413	0	1	961	0
chr1	43528549	43529532	B_Cells_Pritchard.104803	0	.	43528549	43529532	0	1	983	0
chr1	43607898	43610240	B_cells_Cheung.8903	0	.	43607898	43610240	0	1	2342	0
chr1	43607977	43610218	H1_polyA+.5632	0	.	43607977	43610218	0	1	2241	0
chr1	43607981	43610647	REMC_MyoepithelialBreast.4287	0	.	43607981	43610647	0	1	2666	0
chr1	43608263	43609430	brain_AmbionMAQC.2339	0	.	43608263	43609430	0	1	1167	0
chr1	43608330	43609706	HeLa_polyA+_Chen.1713	0	.	43608330	43609706	0	1	1376	0
chr1	43608334	43609656	REMC_LuminalBreast.4670	0	.	43608334	43609656	0	1	1322	0
chr1	43608344	43609325	MCF7_Burge_Thompson.1614	0	.	43608344	43609325	0	1	981	0
chr1	43608755	43610234	CD4_Plagnol_resting.3829	0	.	43608755	43610234	0	1	1479	0
chr1	43608788	43609241	A549_Myers.3418	0	.	43608788	43609241	0	1	453	0
chr1	43608816	43609580	HepG2_Caltech_ENCODE.1829	0	.	43608816	43609580	0	1	764	0
chr1	43609786	43611694	REMC_LuminalBreast.4671	0	.	43609786	43611694	0	1	1908	0
chr1	43610310	43613212	B_cells_Cheung.8904	0	.	43610310	43613212	0	1	2902	0
chr1	43610376	43612806	CD4_Plagnol_resting.3830	0	.	43610376	43612806	0	1	2430	0
chr1	43610398	43613171	H1_polyA+.5633	0	.	43610398	43613171	0	1	2773	0
chr1	43610452	43612023	HeLa_polyA+_Chen.1716	0	.	43610452	43612023	0	1	1571	0
chr1	43610501	43612802	K562.2289	0	.	43610501	43612802	0	1	2301	0
chr1	43610532	43611406	BT474_Burge_Thompson.1717	0	.	43610532	43611406	0	1	874	0
chr1	43610805	43612651	REMC_MyoepithelialBreast.4288	0	.	43610805	43612651	0	1	1846	0
chr1	43610826	43611547	CD4_Plagnol_activated.3818	0	.	43610826	43611547	0	1	721	0
chr1	43611176	43613015	MDAMB468_Thompson.1355	0	.	43611176	43613015	0	1	1839	0
chr1	43611500	43612190	brain_AmbionMAQC.2341	0	.	43611500	43612190	0	1	690	0
chr1	43611797	43613111	REMC_LuminalBreast.4672	0	.	43611797	43613111	0	1	1314	0
chr1	43613849	43616469	H1_polyA+.5634	0	.	43613849	43616469	0	1	2620	0
chr1	43613876	43616188	REMC_MyoepithelialBreast.4289	0	.	43613876	43616188	0	1	2312	0
chr1	43614712	43616487	K562.2290	0	.	43614712	43616487	0	1	1775	0
chr1	43614790	43615954	REMC_LuminalBreast.4674	0	.	43614790	43615954	0	1	1164	0
chr1	43614960	43616166	HeLa_polyA+_Chen.1718	0	.	43614960	43616166	0	1	1206	0
chr1	43615263	43616356	MDAMB468_Thompson.1356	0	.	43615263	43616356	0	1	1093	0
chr1	43615946	43617279	CD4_Plagnol_resting.3831	0	.	43615946	43617279	0	1	1333	0
chr1	43616030	43616937	brain_AmbionMAQC.2343	0	.	43616030	43616937	0	1	907	0
chr1	43616052	43620262	REMC_LuminalBreast.4675	0	.	43616052	43620262	0	1	4210	0
chr1	43616625	43617286	K562.2291	0	.	43616625	43617286	0	1	661	0
chr1	43618031	43620077	REMC_MyoepithelialBreast.4291	0	.	43618031	43620077	0	1	2046	0
chr1	43707221	43712146	HIT000056843	0	+	43707221	43712146	0	1	4925	0
chr1	43738956	43739491	prostate_carcinoma.4593	0	.	43738956	43739491	0	1	535	0
chr1	43761583	43762558	REMC_LuminalBreast.4683	0	.	43761583	43762558	0	1	975	0
chr1	43863071	43863850	B_Cells_Pritchard.105489	0	.	43863071	43863850	0	1	779	0
chr1	43863403	43864099	brain_AmbionMAQC.2347	0	.	43863403	43864099	0	1	696	0
chr1	43863439	43864217	liver_polyA+.6135	0	.	43863439	43864217	0	1	778	0
chr1	43863471	43863891	HeLa_polyA+_Chen.1725	0	.	43863471	43863891	0	1	420	0
chr1	43863734	43864144	A549_Myers.3404	0	.	43863734	43864144	0	1	410	0
chr1	43865915	43867126	REMC_LuminalBreast.4714	0	.	43865915	43867126	0	1	1211	0
chr1	43868100	43876549	REMC_LuminalBreast.4715	0	.	43868100	43876549	0	1	8449	0
chr1	43869416	43871139	REMC_MyoepithelialBreast.4277	0	.	43869416	43871139	0	1	1723	0
chr1	43875052	43876067	REMC_MyoepithelialBreast.4279	0	.	43875052	43876067	0	1	1015	0
chr1	44176549	44177030	MCF7_Burge_Thompson.1622	0	.	44176549	44177030	0	1	481	0
chr1	44176565	44176923	A549_Myers.3467	0	.	44176565	44176923	0	1	358	0
chr1	44176621	44177049	MB435_Burge.2594	0	.	44176621	44177049	0	1	428	0
chr1	44176660	44177531	CD4_Plagnol_resting.3837	0	.	44176660	44177531	0	1	871	0
chr1	44176687	44177140	liver_polyA+.6257	0	.	44176687	44177140	0	1	453	0
chr1	44177093	44177474	MCF7_Burge_Thompson.1621	0	.	44177093	44177474	0	1	381	0
chr1	44180139	44181747	REMC_BreastStem.2495	0	.	44180139	44181747	0	1	1608	0
chr1	44182364	44184853	HepG2_Caltech_ENCODE.1908	0	-	44182364	44184853	0	2	691,351	0,2138
chr1	44182484	44183751	REMC_LuminalBreast.4775	0	.	44182484	44183751	0	1	1267	0
chr1	44182493	44184812	K562.2307	0	-	44182493	44184812	0	2	562,315	0,2004
chr1	44183334	44183657	H1_rRNA-depleted_UCSD_REMC.4303	0	.	44183334	44183657	0	1	323	0
chr1	44273931	44276648	H1_polyA+.5885	0	.	44273931	44276648	0	1	2717	0
chr1	44278176	44278696	K562.2358	0	.	44278176	44278696	0	1	520	0
chr1	44289270	44289834	prostate_carcinoma.4733	0	.	44289270	44289834	0	1	564	0
chr1	44293351	44293849	HeLa_polyA+_Chen.1790	0	.	44293351	44293849	0	1	498	0
chr1	44293371	44296629	REMC_MyoepithelialBreast.4301	0	.	44293371	44296629	0	1	3258	0
chr1	44296066	44296561	HeLa_polyA+_Chen.1792	0	.	44296066	44296561	0	1	495	0
chr1	44309232	44309823	REMC_MyoepithelialBreast.4309	0	.	44309232	44309823	0	1	591	0
chr1	44309283	44309817	HeLa_polyA+_Chen.1796	0	.	44309283	44309817	0	1	534	0
chr1	44310068	44310891	B_Cells_Pritchard.106127	0	.	44310068	44310891	0	1	823	0
chr1	44315611	44318592	REMC_MyoepithelialBreast.4312	0	.	44315611	44318592	0	1	2981	0
chr1	44317587	44318585	REMC_LuminalBreast.4786	0	.	44317587	44318585	0	1	998	0
chr1	44319017	44319423	REMC_LuminalBreast.4787	0	.	44319017	44319423	0	1	406	0
chr1	44319723	44320083	HeLa_polyA+_Chen.1800	0	.	44319723	44320083	0	1	360	0
chr1	44319734	44323881	REMC_MyoepithelialBreast.4314	0	.	44319734	44323881	0	1	4147	0
chr1	44323868	44324418	melanoma_Garraway_short_term_cultures.3644	0	.	44323868	44324418	0	1	550	0
chr1	44326423	44329326	HeLa_polyA+_Chen.1806	0	.	44326423	44329326	0	1	2903	0
chr1	44326903	44329029	melanoma_Garraway_short_term_cultures.3646	0	.	44326903	44329029	0	1	2126	0
chr1	44327511	44328149	prostate_normal.3036	0	.	44327511	44328149	0	1	638	0
chr1	44330467	44333388	REMC_MyoepithelialBreast.4319	0	.	44330467	44333388	0	1	2921	0
chr1	44331949	44333382	REMC_LuminalBreast.4795	0	.	44331949	44333382	0	1	1433	0
chr1	44332922	44352227	prostate_carcinoma.4738	0	+	44332922	44352227	0	3	22,106,1468	0,9738,17837
chr1	44338835	44346934	REMC_MyoepithelialBreast.4299	0	+	44338835	44346934	0	2	1039,5610	0,2489
chr1	44341270	44346934	REMC_MyoepithelialBreast.4298	0	.	44341270	44346934	0	1	5664	0
chr1	44341520	44345447	HeLa_polyA+_Chen.1767	0	+	44341520	44345447	0	2	1845,1768	0,2159
chr1	44341520	44345447	HeLa_polyA+_Chen.1768	0	.	44341520	44345447	0	1	3927	0
chr1	44341640	44345520	REMC_LuminalBreast.4798	0	.	44341640	44345520	0	1	3880	0
chr1	44341803	44342564	HeLa_polyA-_Chen.920	0	.	44341803	44342564	0	1	761	0
chr1	44342111	44352912	prostate_normal.3037	0	+	44342111	44352912	0	4	154,163,8,1094	0,462,7826,9707
chr1	44342189	44342493	H1_polyA+.5814	0	.	44342189	44342493	0	1	304	0
chr1	44347025	44349021	REMC_LuminalBreast.4800	0	.	44347025	44349021	0	1	1996	0
chr1	44411010	44413526	REMC_LuminalBreast.4804	0	.	44411010	44413526	0	1	2516	0
chr1	44411039	44412497	REMC_MyoepithelialBreast.4393	0	.	44411039	44412497	0	1	1458	0
chr1	44411334	44412407	REMC_BreastStem.2502	0	.	44411334	44412407	0	1	1073	0
chr1	44428779	44429779	REMC_LuminalBreast.4811	0	.	44428779	44429779	0	1	1000	0
chr1	44433674	44434479	REMC_LuminalBreast.4814	0	.	44433674	44434479	0	1	805	0
chr1	44438599	44440091	B_cells_Cheung.8282	0	.	44438599	44440091	0	1	1492	0
chr1	44438609	44439799	B_Cells_Pritchard.106601	0	.	44438609	44439799	0	1	1190	0
chr1	44438614	44439819	REMC_LuminalBreast.4806	0	.	44438614	44439819	0	1	1205	0
chr1	44438704	44439846	melanoma_Garraway_short_term_cultures.3655	0	.	44438704	44439846	0	1	1142	0
chr1	44448236	44449887	REMC_MyoepithelialBreast.4405	0	.	44448236	44449887	0	1	1651	0
chr1	44965778	44968008	REMC_LuminalBreast.4934	0	.	44965778	44968008	0	1	2230	0
chr1	44966076	44966564	melanoma_Garraway_short_term_cultures.3689	0	.	44966076	44966564	0	1	488	0
chr1	44969939	44970453	REMC_LuminalBreast.4936	0	.	44969939	44970453	0	1	514	0
chr1	44969991	44970957	B_cells_Cheung.8994	0	.	44969991	44970957	0	1	966	0
chr1	44976029	44976629	B_cells_Cheung.8996	0	.	44976029	44976629	0	1	600	0
chr1	45018057	45018372	H1_rRNA-depleted_UCSD_REMC.4398	0	.	45018057	45018372	0	1	315	0
chr1	45027922	45029631	REMC_MyoepithelialBreast.4535	0	.	45027922	45029631	0	1	1709	0
chr1	45029039	45029816	REMC_LuminalBreast.4947	0	.	45029039	45029816	0	1	777	0
chr1	45055159	45057042	B_cells_Cheung.8485	0	.	45055159	45057042	0	1	1883	0
chr1	45055763	45056182	testes_Burge.3363	0	.	45055763	45056182	0	1	419	0
chr1	45554718	45555718	REMC_LuminalBreast.4994	0	.	45554718	45555718	0	1	1000	0
chr1	45561907	45562453	REMC_LuminalBreast.5012	0	.	45561907	45562453	0	1	546	0
chr1	45810522	45812820	H1_polyA+.6719	0	.	45810522	45812820	0	1	2298	0
chr1	45816842	45819139	H1_polyA+.6720	0	.	45816842	45819139	0	1	2297	0
chr1	45817266	45818178	REMC_MyoepithelialBreast.4530	0	.	45817266	45818178	0	1	912	0
chr1	45817295	45818935	B_cells_Cheung.9541	0	.	45817295	45818935	0	1	1640	0
chr1	45817921	45818296	HeLa_polyA+_Chen.1872	0	.	45817921	45818296	0	1	375	0
chr1	45863888	45864460	MIP101.3863	0	.	45863888	45864460	0	1	572	0
chr1	45863925	45864466	BT474_Burge_Thompson.1810	0	.	45863925	45864466	0	1	541	0
chr1	45864075	45864467	H9_polyA+.2612	0	.	45864075	45864467	0	1	392	0
chr1	46459925	46461133	B_Cells_Pritchard.111071	0	-	46459925	46461133	0	3	369,475,311	0,369,897
chr1	46466856	46467531	REMC_MyoepithelialBreast.4686	0	.	46466856	46467531	0	1	675	0
chr1	46471968	46473002	REMC_MyoepithelialBreast.4688	0	.	46471968	46473002	0	1	1034	0
chr1	46472071	46472704	REMC_BreastStem.2683	0	.	46472071	46472704	0	1	633	0
chr1	46474442	46478460	REMC_BreastStem.2684	0	.	46474442	46478460	0	1	4018	0
chr1	46484994	46485695	B_Cells_Pritchard.111243	0	-	46484994	46485695	0	1	701	0
chr1	46564757	46567113	B_cells_Cheung.8919	0	.	46564757	46567113	0	1	2356	0
chr1	46569452	46570583	B_cells_Cheung.8925	0	.	46569452	46570583	0	1	1131	0
chr1	46571129	46573028	B_Cells_Pritchard.111337	0	.	46571129	46573028	0	1	1899	0
chr1	46571228	46572840	REMC_LuminalBreast.5126	0	.	46571228	46572840	0	1	1612	0
chr1	46572078	46572996	B_cells_Cheung.8928	0	.	46572078	46572996	0	1	918	0
chr1	46606163	46606911	HeLa_polyA+_Chen.1909	0	.	46606163	46606911	0	1	748	0
chr1	46606301	46606993	CD4_Plagnol_resting.4079	0	.	46606301	46606993	0	1	692	0
chr1	46606303	46606915	prostate_carcinoma.5031	0	.	46606303	46606915	0	1	612	0
chr1	46606305	46606918	MDAMB468_Thompson.1464	0	.	46606305	46606918	0	1	613	0
chr1	46606309	46607056	MIP101.3598	0	.	46606309	46607056	0	1	747	0
chr1	46606322	46606877	MeWo_Garraway.2091	0	.	46606322	46606877	0	1	555	0
chr1	46606322	46606900	K562.2570	0	.	46606322	46606900	0	1	578	0
chr1	46606373	46606888	B_Cells_Pritchard.111383	0	-	46606373	46606888	0	1	515	0
chr1	46606382	46606976	prostate_normal.3401	0	.	46606382	46606976	0	1	594	0
chr1	46609245	46612332	REMC_MyoepithelialBreast.4893	0	.	46609245	46612332	0	1	3087	0
chr1	46609770	46612153	REMC_LuminalBreast.5134	0	.	46609770	46612153	0	1	2383	0
chr1	46609808	46611130	B_cells_Cheung.8942	0	.	46609808	46611130	0	1	1322	0
chr1	46617755	46621731	H1_polyA+.6304	0	.	46617755	46621731	0	1	3976	0
chr1	46620955	46621521	REMC_LuminalBreast.5140	0	.	46620955	46621521	0	1	566	0
chr1	46621080	46621682	B_cells_Cheung.8946	0	.	46621080	46621682	0	1	602	0
chr1	46621171	46621720	B_Cells_Pritchard.111391	0	.	46621171	46621720	0	1	549	0
chr1	46621990	46625894	H1_polyA+.6305	0	.	46621990	46625894	0	1	3904	0
chr1	46625166	46625637	REMC_LuminalBreast.5143	0	.	46625166	46625637	0	1	471	0
chr1	46626141	46627534	H1_polyA+.6306	0	.	46626141	46627534	0	1	1393	0
chr1	46627435	46628092	REMC_LuminalBreast.5145	0	.	46627435	46628092	0	1	657	0
chr1	46627645	46629133	H1_polyA+.6307	0	.	46627645	46629133	0	1	1488	0
chr1	46628230	46629097	REMC_LuminalBreast.5146	0	.	46628230	46629097	0	1	867	0
chr1	46689774	46692529	prostate_carcinoma.5054	0	.	46689774	46692529	0	1	2755	0
chr1	46699148	46700035	prostate_carcinoma.5056	0	.	46699148	46700035	0	1	887	0
chr1	46706882	46709130	prostate_carcinoma.5057	0	.	46706882	46709130	0	1	2248	0
chr1	46714614	46718257	prostate_carcinoma.5062	0	.	46714614	46718257	0	1	3643	0
chr1	46714842	46715876	prostate_normal.3418	0	.	46714842	46715876	0	1	1034	0
chr1	46727970	46729044	A549_Myers.3677	0	+	46727970	46729044	0	2	158,756	0,318
chr1	46728058	46728675	K562.2529	0	.	46728058	46728675	0	1	617	0
chr1	46728087	46728716	T47D_Burge_Thompson.1688	0	.	46728087	46728716	0	1	629	0
chr1	46728092	46728746	ZR751_Thompson.1475	0	.	46728092	46728746	0	1	654	0
chr1	46728140	46729044	A549_Myers.3678	0	.	46728140	46729044	0	1	904	0
chr1	46728713	46730470	pHIT000001424	0	+	46728713	46730470	0	2	329,166	0,1591
chr1	46728713	46729042	pHIT000097794	0	+	46728713	46729042	0	1	329	0
chr1	46758453	46770191	khalil_30	0	.	46758453	46770191	0	6	643,175,197,333,161,271	0,3883,6454,8838,11129,11467
chr1	46771207	46771927	A549_Myers.3686	0	.	46771207	46771927	0	1	720	0
chr1	46771225	46771912	brain_AmbionMAQC.2531	0	.	46771225	46771912	0	1	687	0
chr1	46856642	46859795	MIP101.3923	0	.	46856642	46859795	0	1	3153	0
chr1	46856709	46859665	B_Cells_Pritchard.111953	0	.	46856709	46859665	0	1	2956	0
chr1	46857165	46858532	REMC_MyoepithelialBreast.4931	0	.	46857165	46858532	0	1	1367	0
chr1	47412651	47418582	B_Cells_Pritchard.112955	0	-	47412651	47418582	0	2	2875,2357	0,3574
chr1	47412651	47418582	B_Cells_Pritchard.112953	0	+	47412651	47418582	0	3	2875,1873,459	0,3376,5472
chr1	47412852	47418049	REMC_LuminalBreast.5296	0	-	47412852	47418049	0	5	31,324,1239,965,601	0,1530,2334,3577,4596
chr1	47413540	47415303	MIP101.3615	0	.	47413540	47415303	0	1	1763	0
chr1	47414004	47415276	melanoma_Garraway_short_term_cultures.3944	0	.	47414004	47415276	0	1	1272	0
chr1	47414722	47415318	B_cells_Cheung.9032	0	.	47414722	47415318	0	1	596	0
chr1	47414740	47415428	MCF7_Burge_Thompson.1765	0	.	47414740	47415428	0	1	688	0
chr1	47415941	47418658	B_cells_Cheung.9034	0	+	47415941	47418658	0	2	1785,535	0,2182
chr1	47415966	47418590	prostate_carcinoma.5112	0	.	47415966	47418590	0	1	2624	0
chr1	47415976	47417496	MIP101.3616	0	.	47415976	47417496	0	1	1520	0
chr1	47416222	47416696	BT474_Burge_Thompson.1913	0	.	47416222	47416696	0	1	474	0
chr1	47416250	47417507	prostate_normal.3307	0	.	47416250	47417507	0	1	1257	0
chr1	47416485	47417467	H1_polyA+.6375	0	.	47416485	47417467	0	1	982	0
chr1	47416875	47418569	Rinn_00000929	0	+	47416875	47418569	0	2	822,447	0,1247
chr1	47418163	47419511	REMC_LuminalBreast.5298	0	.	47418163	47419511	0	1	1348	0
chr1	47419206	47419608	B_Cells_Pritchard.112963	0	.	47419206	47419608	0	1	402	0
chr1	47438425	47445137	K562.2571	0	-	47438425	47445137	0	2	79,4603	0,2109
chr1	47439613	47445137	K562.2572	0	.	47439613	47445137	0	1	5524	0
chr1	47553438	47554541	REMC_LuminalBreast.5746	0	.	47553438	47554541	0	1	1103	0
chr1	47554056	47554556	B_cells_Cheung.9069	0	.	47554056	47554556	0	1	500	0
chr1	47570021	47570354	REMC_MyoepithelialBreast.4937	0	.	47570021	47570354	0	1	333	0
chr1	47570292	47571048	CD4_Plagnol_activated.4208	0	.	47570292	47571048	0	1	756	0
chr1	47618976	47625409	REMC_LuminalBreast.5811	0	.	47618976	47625409	0	1	6433	0
chr1	47619292	47654107	pHIT000001451	0	-	47619292	47654107	0	4	110,45,156,82	0,21133,27286,34733
chr1	47624208	47625008	HepG2_Caltech_ENCODE.2039	0	.	47624208	47625008	0	1	800	0
chr1	47624250	47625112	K562.2652	0	.	47624250	47625112	0	1	862	0
chr1	47624373	47625170	B_cells_Cheung.9107	0	.	47624373	47625170	0	1	797	0
chr1	47624381	47625007	HeLa_polyA+_Chen.1976	0	.	47624381	47625007	0	1	626	0
chr1	47624392	47625301	prostate_carcinoma.5152	0	.	47624392	47625301	0	1	909	0
chr1	47624399	47625020	prostate_normal.3332	0	.	47624399	47625020	0	1	621	0
chr1	47624405	47625052	melanoma_Garraway_short_term_cultures.3961	0	.	47624405	47625052	0	1	647	0
chr1	47626723	47627454	B_cells_Cheung.9109	0	.	47626723	47627454	0	1	731	0
chr1	47626866	47627614	melanoma_Garraway_short_term_cultures.3962	0	.	47626866	47627614	0	1	748	0
chr1	47627022	47627857	REMC_MyoepithelialBreast.4950	0	.	47627022	47627857	0	1	835	0
chr1	47627091	47627527	A549_Myers.3756	0	.	47627091	47627527	0	1	436	0
chr1	47632036	47633804	HIT000018387	0	-	47632036	47633804	0	1	1768	0
chr1	47633448	47635261	REMC_LuminalBreast.5815	0	.	47633448	47635261	0	1	1813	0
chr1	47633934	47634424	B_cells_Cheung.9112	0	.	47633934	47634424	0	1	490	0
chr1	47636359	47637248	REMC_LuminalBreast.5817	0	.	47636359	47637248	0	1	889	0
chr1	47636512	47637225	MIP101.3800	0	.	47636512	47637225	0	1	713	0
chr1	47636656	47637264	B_cells_Cheung.9113	0	.	47636656	47637264	0	1	608	0
chr1	47640404	47642948	MIP101.3802	0	.	47640404	47642948	0	1	2544	0
chr1	47640758	47642730	REMC_LuminalBreast.5820	0	.	47640758	47642730	0	1	1972	0
chr1	47643250	47643995	B_Cells_Pritchard.113487	0	.	47643250	47643995	0	1	745	0
chr1	47646145	47649974	MIP101.3805	0	.	47646145	47649974	0	1	3829	0
chr1	47647713	47649624	REMC_MyoepithelialBreast.4953	0	.	47647713	47649624	0	1	1911	0
chr1	47650967	47651821	REMC_LuminalBreast.5822	0	.	47650967	47651821	0	1	854	0
chr1	47652179	47652595	B_Cells_Pritchard.113521	0	.	47652179	47652595	0	1	416	0
chr1	47664310	47667977	B_Cells_Pritchard.113549	0	.	47664310	47667977	0	1	3667	0
chr1	47664474	47665213	HeLa_polyA+_Chen.1984	0	.	47664474	47665213	0	1	739	0
chr1	47664611	47668248	B_cells_Cheung.9120	0	.	47664611	47668248	0	1	3637	0
chr1	47664640	47667980	melanoma_Garraway_short_term_cultures.3963	0	.	47664640	47667980	0	1	3340	0
chr1	47664651	47665793	CD4_Plagnol_resting.4100	0	.	47664651	47665793	0	1	1142	0
chr1	47664776	47667960	prostate_carcinoma.5153	0	.	47664776	47667960	0	1	3184	0
chr1	47664822	47665541	K562.2573	0	.	47664822	47665541	0	1	719	0
chr1	47664827	47667978	MIP101.3809	0	.	47664827	47667978	0	1	3151	0
chr1	47665009	47666270	prostate_normal.3333	0	.	47665009	47666270	0	1	1261	0
chr1	47665126	47665533	A549_Myers.3759	0	.	47665126	47665533	0	1	407	0
chr1	47669408	47670191	HeLa_polyA+_Chen.1988	0	.	47669408	47670191	0	1	783	0
chr1	47669562	47670277	prostate_normal.3335	0	.	47669562	47670277	0	1	715	0
chr1	47669647	47670363	BT474_Burge_Thompson.1918	0	.	47669647	47670363	0	1	716	0
chr1	47670373	47672900	HIT000086590	0	-	47670373	47672900	0	1	2527	0
chr1	47670391	47672900	ENST00000445551	0	-	47670391	47672900	0	1	2509	0
chr1	47670392	47672900	NR_026878	0	-	47670392	47672900	0	1	2508	0
chr1	47671857	47673023	colon_Burge.2465	0	.	47671857	47673023	0	1	1166	0
chr1	47680078	47681882	prostate_carcinoma.5158	0	.	47680078	47681882	0	1	1804	0
chr1	47682474	47683061	prostate_carcinoma.5159	0	.	47682474	47683061	0	1	587	0
chr1	47683305	47683951	prostate_carcinoma.5160	0	.	47683305	47683951	0	1	646	0
chr1	47686307	47687484	prostate_carcinoma.5163	0	.	47686307	47687484	0	1	1177	0
chr1	47697426	47697806	A549_Myers.3771	0	.	47697426	47697806	0	1	380	0
chr1	47741770	47742381	B_Cells_Pritchard.113765	0	.	47741770	47742381	0	1	611	0
chr1	47895361	47915978	pHIT000071957	0	-	47895361	47915978	0	4	80,25,76,180	0,7081,7391,20437
chr1	47948780	47949161	A549_Myers.3775	0	.	47948780	47949161	0	1	381	0
chr1	47978201	47978625	REMC_MyoepithelialBreast.5293	0	.	47978201	47978625	0	1	424	0
chr1	48431677	48432778	REMC_LuminalBreast.5315	0	.	48431677	48432778	0	1	1101	0
chr1	48431938	48433025	REMC_MyoepithelialBreast.4978	0	.	48431938	48433025	0	1	1087	0
chr1	48453075	48454424	prostate_carcinoma.5183	0	.	48453075	48454424	0	1	1349	0
chr1	48488018	48489657	HepG2_Caltech_ENCODE.2055	0	.	48488018	48489657	0	1	1639	0
chr1	48488736	48489907	H1_polyA+.6434	0	.	48488736	48489907	0	1	1171	0
chr1	48489801	48492291	REMC_LuminalBreast.5327	0	.	48489801	48492291	0	1	2490	0
chr1	48490275	48493743	HepG2_Caltech_ENCODE.2057	0	.	48490275	48493743	0	1	3468	0
chr1	48490662	48491833	REMC_MyoepithelialBreast.4995	0	.	48490662	48491833	0	1	1171	0
chr1	48493530	48496059	REMC_MyoepithelialBreast.4997	0	.	48493530	48496059	0	1	2529	0
chr1	48493732	48496782	REMC_LuminalBreast.5329	0	.	48493732	48496782	0	1	3050	0
chr1	48494867	48495833	HepG2_Caltech_ENCODE.2059	0	.	48494867	48495833	0	1	966	0
chr1	48495942	48496615	HepG2_Caltech_ENCODE.2060	0	.	48495942	48496615	0	1	673	0
chr1	48505641	48505993	prostate_carcinoma.5198	0	.	48505641	48505993	0	1	352	0
chr1	48509885	48512061	REMC_LuminalBreast.5332	0	.	48509885	48512061	0	1	2176	0
chr1	48513611	48514241	REMC_LuminalBreast.5333	0	.	48513611	48514241	0	1	630	0
chr1	48731610	48733327	HIT000043418	0	+	48731610	48733327	0	1	1717	0
chr1	51214063	51215678	prostate_carcinoma.5271	0	.	51214063	51215678	0	1	1615	0
chr1	51214264	51216496	K562.2601	0	.	51214264	51216496	0	1	2232	0
chr1	51214569	51215396	melanoma_Garraway_short_term_cultures.4004	0	.	51214569	51215396	0	1	827	0
chr1	51214590	51215576	HeLa_polyA+_Chen.2009	0	.	51214590	51215576	0	1	986	0
chr1	51214709	51215156	prostate_normal.3386	0	.	51214709	51215156	0	1	447	0
chr1	51215303	51216500	Rinn_00001494	0	-	51215303	51216500	0	2	208,260	0,937
chr1	51215432	51216218	brain_AmbionMAQC.2636	0	.	51215432	51216218	0	1	786	0
chr1	51215733	51216337	prostate_carcinoma.5272	0	.	51215733	51216337	0	1	604	0
chr1	51215849	51216245	MB435_Burge.2850	0	.	51215849	51216245	0	1	396	0
chr1	51215864	51217526	HeLa_polyA-_Chen.1027	0	.	51215864	51217526	0	1	1662	0
chr1	51220135	51235668	B_Cells_Pritchard.121457	0	+	51220135	51235668	0	6	419,2332,31,76,1185,1751	0,2984,7277,8597,10385,13782
chr1	51220135	51235668	B_Cells_Pritchard.121459	0	-	51220135	51235668	0	7	192,127,539,81,1163,1789,1252	0,7152,9000,10325,10421,11891,14281
chr1	51229144	51229902	B_cells_Cheung.9181	0	.	51229144	51229902	0	1	758	0
chr1	51231910	51235679	B_cells_Cheung.9185	0	.	51231910	51235679	0	1	3769	0
chr1	51232807	51233633	HeLa_polyA+_Chen.2031	0	.	51232807	51233633	0	1	826	0
chr1	51244057	51244392	HeLa_polyA+_Chen.2024	0	.	51244057	51244392	0	1	335	0
chr1	51244095	51244564	B_cells_Cheung.9190	0	.	51244095	51244564	0	1	469	0
chr1	51254060	51255813	B_Cells_Pritchard.121511	0	-	51254060	51255813	0	2	270,428	0,1325
chr1	51274121	51274705	B_Cells_Pritchard.121607	0	-	51274121	51274705	0	1	584	0
chr1	51297451	51299096	B_Cells_Pritchard.121673	0	.	51297451	51299096	0	1	1645	0
chr1	51297533	51298163	B_cells_Cheung.9208	0	.	51297533	51298163	0	1	630	0
chr1	51298419	51299391	B_cells_Cheung.9209	0	.	51298419	51299391	0	1	972	0
chr1	51324660	51325107	B_Cells_Pritchard.121791	0	.	51324660	51325107	0	1	447	0
chr1	51516904	51523892	REMC_MyoepithelialBreast.5026	0	.	51516904	51523892	0	1	6988	0
chr1	51518834	51519612	B_cells_Cheung.9231	0	.	51518834	51519612	0	1	778	0
chr1	51519940	51520692	B_cells_Cheung.9233	0	.	51519940	51520692	0	1	752	0
chr1	51520747	51521606	B_cells_Cheung.9234	0	.	51520747	51521606	0	1	859	0
chr1	51520934	51521605	melanoma_Garraway_short_term_cultures.4026	0	.	51520934	51521605	0	1	671	0
chr1	51585238	51588639	B_Cells_Pritchard.122543	0	.	51585238	51588639	0	1	3401	0
chr1	51761657	51762847	prostate_carcinoma.8683	0	.	51761657	51762847	0	1	1190	0
chr1	51761788	51762898	liver_polyA+.7227	0	.	51761788	51762898	0	2	328,731	0,379
chr1	51762964	51768304	B_cells_Cheung.9305	0	.	51762964	51768304	0	3	2042,2584,565	0,2140,4775
chr1	51765741	51766717	K562.2779	0	.	51765741	51766717	0	1	976	0
chr1	51779385	51783011	B_Cells_Pritchard.123305	0	-	51779385	51783011	0	4	918,1212,563,509	0,977,2550,3117
chr1	51786368	51788887	B_cells_Cheung.9309	0	.	51786368	51788887	0	1	2519	0
chr1	51787111	51787826	liver_polyA+.7249	0	.	51787111	51787826	0	1	715	0
chr1	51787172	51787813	prostate_carcinoma.8696	0	.	51787172	51787813	0	1	641	0
chr1	52607816	52608365	HeLa_polyA+_Chen.2090	0	.	52607816	52608365	0	1	549	0
chr1	52797167	52797912	H1_polyA+.7119	0	.	52797167	52797912	0	1	745	0
chr1	52848619	52849397	CD4_Plagnol_activated.4473	0	.	52848619	52849397	0	1	778	0
chr1	52849489	52851523	REMC_MyoepithelialBreast.5306	0	.	52849489	52851523	0	1	2034	0
chr1	52849495	52850911	B_cells_Cheung.9625	0	.	52849495	52850911	0	1	1416	0
chr1	52849702	52851126	H1_polyA+.6795	0	.	52849702	52851126	0	1	1424	0
chr1	52850075	52851033	prostate_normal.3534	0	.	52850075	52851033	0	1	958	0
chr1	52850123	52850986	CD4_Plagnol_activated.4474	0	.	52850123	52850986	0	1	863	0
chr1	52850237	52851515	CD4_Plagnol_resting.4305	0	.	52850237	52851515	0	1	1278	0
chr1	52850252	52851256	B_Cells_Pritchard.125887	0	+	52850252	52851256	0	1	1004	0
chr1	52866788	52868331	CD4_Plagnol_resting.4301	0	.	52866788	52868331	0	1	1543	0
chr1	52866950	52869260	CD4_Plagnol_activated.4480	0	.	52866950	52869260	0	1	2310	0
chr1	52867300	52867937	H1_polyA+.6800	0	.	52867300	52867937	0	1	637	0
chr1	52867314	52868344	B_Cells_Pritchard.125927	0	.	52867314	52868344	0	1	1030	0
chr1	52907943	52909340	H1_polyA+.6803	0	.	52907943	52909340	0	1	1397	0
chr1	52908480	52909406	B_Cells_Pritchard.125985	0	.	52908480	52909406	0	1	926	0
chr1	52910383	52911019	CD4_Plagnol_resting.4387	0	.	52910383	52911019	0	1	636	0
chr1	52910418	52910936	H1_polyA+.6805	0	.	52910418	52910936	0	1	518	0
chr1	52914065	52914817	REMC_MyoepithelialBreast.5311	0	.	52914065	52914817	0	1	752	0
chr1	52921757	52922199	CD4_Snyder.3441	0	.	52921757	52922199	0	1	442	0
chr1	52921760	52922193	prostate_carcinoma.5523	0	.	52921760	52922193	0	1	433	0
chr1	53566491	53575477	Rinn_00000041	0	+	53566491	53575477	0	3	144,85,1049	0,2935,7937
chr1	53566491	53577573	HIT000022425	0	+	53566491	53577573	0	4	144,84,1040,422	0,2936,7938,10660
chr1	53567758	53568388	MIP101.4171	0	.	53567758	53568388	0	1	630	0
chr1	53568339	53568887	H1_rRNA-depleted_UCSD_REMC.5148	0	.	53568339	53568887	0	1	548	0
chr1	53568802	53570146	MIP101.4172	0	.	53568802	53570146	0	1	1344	0
chr1	53570021	53570531	H9_polyA+.2881	0	.	53570021	53570531	0	1	510	0
chr1	53573926	53575355	MIP101.4175	0	.	53573926	53575355	0	1	1429	0
chr1	53574261	53575324	melanoma_Garraway_short_term_cultures.4209	0	.	53574261	53575324	0	1	1063	0
chr1	53574368	53574888	H9_polyA+.2884	0	.	53574368	53574888	0	1	520	0
chr1	53577956	53578698	brain_AmbionMAQC.2747	0	.	53577956	53578698	0	1	742	0
chr1	53580141	53580595	B_Cells_Pritchard.127103	0	-	53580141	53580595	0	1	454	0
chr1	53580286	53580595	B_Cells_Pritchard.127105	0	+	53580286	53580595	0	1	309	0
chr1	53581986	53582738	B_Cells_Pritchard.127107	0	.	53581986	53582738	0	1	752	0
chr1	53583672	53584946	B_Cells_Pritchard.127113	0	.	53583672	53584946	0	1	1274	0
chr1	53586970	53587946	B_Cells_Pritchard.127119	0	.	53586970	53587946	0	1	976	0
chr1	53600215	53602124	B_cells_Cheung.9771	0	.	53600215	53602124	0	1	1909	0
chr1	53603125	53604414	B_cells_Cheung.9773	0	.	53603125	53604414	0	1	1289	0
chr1	53605203	53605537	prostate_carcinoma.5598	0	.	53605203	53605537	0	1	334	0
chr1	53614375	53615396	pHIT000097860	0	+	53614375	53615396	0	2	288,143	0,878
chr1	53678024	53696037	Rinn_00000946	0	+	53678024	53696037	0	2	334,14	0,17999
chr1	53712407	53714808	REMC_BreastStem.2917	0	.	53712407	53714808	0	1	2401	0
chr1	53976783	53977466	prostate_carcinoma.5643	0	.	53976783	53977466	0	1	683	0
chr1	53976936	53977782	A549_Myers.4038	0	.	53976936	53977782	0	1	846	0
chr1	53996550	53997371	H1_polyA+.6929	0	.	53996550	53997371	0	1	821	0
chr1	54085730	54087220	B_Cells_Pritchard.128421	0	+	54085730	54087220	0	1	1490	0
chr1	54085798	54087185	REMC_LuminalBreast.5851	0	.	54085798	54087185	0	1	1387	0
chr1	54086390	54086869	B_cells_Cheung.9793	0	.	54086390	54086869	0	1	479	0
chr1	54153811	54154249	prostate_carcinoma.5677	0	.	54153811	54154249	0	1	438	0
chr1	54241208	54241933	HepG2_Caltech_ENCODE.2212	0	.	54241208	54241933	0	1	725	0
chr1	54242353	54244229	HepG2_Caltech_ENCODE.2213	0	.	54242353	54244229	0	1	1876	0
chr1	54268121	54268651	MeWo_Garraway.2259	0	.	54268121	54268651	0	1	530	0
chr1	54356480	54365921	khalil_34	0	.	54356480	54365921	0	4	176,715,251,233	0,3548,8814,9208
chr1	54359997	54360343	A549_Myers.4084	0	.	54359997	54360343	0	1	346	0
chr1	54726447	54726804	A549_Myers.4112	0	.	54726447	54726804	0	1	357	0
chr1	54726671	54727090	B_cells_Cheung.9995	0	.	54726671	54727090	0	1	419	0
chr1	54726756	54727127	B_Cells_Pritchard.129893	0	.	54726756	54727127	0	1	371	0
chr1	54727156	54727582	B_cells_Cheung.9996	0	.	54727156	54727582	0	1	426	0
chr1	54727232	54727792	B_Cells_Pritchard.129895	0	.	54727232	54727792	0	1	560	0
chr1	54727572	54727919	A549_Myers.4113	0	.	54727572	54727919	0	1	347	0
chr1	54744651	54746236	prostate_carcinoma.5792	0	.	54744651	54746236	0	1	1585	0
chr1	54745175	54746386	B_cells_Cheung.9997	0	.	54745175	54746386	0	1	1211	0
chr1	54745657	54746223	B_Cells_Pritchard.129963	0	.	54745657	54746223	0	1	566	0
chr1	54747666	54748073	B_Cells_Pritchard.129971	0	.	54747666	54748073	0	1	407	0
chr1	54749039	54749981	B_Cells_Pritchard.129975	0	.	54749039	54749981	0	1	942	0
chr1	54749403	54750056	B_cells_Cheung.10000	0	.	54749403	54750056	0	1	653	0
chr1	54753007	54753356	prostate_carcinoma.5795	0	.	54753007	54753356	0	1	349	0
chr1	54754604	54756326	prostate_carcinoma.5796	0	.	54754604	54756326	0	1	1722	0
chr1	54778830	54779589	H1_polyA+.7169	0	.	54778830	54779589	0	1	759	0
chr1	54983771	54984145	REMC_MyoepithelialBreast.5576	0	.	54983771	54984145	0	1	374	0
chr1	54984877	54986441	REMC_MyoepithelialBreast.5577	0	.	54984877	54986441	0	1	1564	0
chr1	54986982	54988982	REMC_MyoepithelialBreast.5578	0	.	54986982	54988982	0	1	2000	0
chr1	54987644	54988700	REMC_LuminalBreast.5938	0	.	54987644	54988700	0	1	1056	0
chr1	54989808	54991036	REMC_MyoepithelialBreast.5579	0	.	54989808	54991036	0	1	1228	0
chr1	54992216	54992762	B_Cells_Pritchard.130665	0	.	54992216	54992762	0	1	546	0
chr1	54992892	54993385	B_cells_Cheung.10040	0	.	54992892	54993385	0	1	493	0
chr1	54993687	54994146	CD4_Plagnol_resting.4542	0	.	54993687	54994146	0	1	459	0
chr1	55013652	55015081	REMC_LuminalBreast.5940	0	.	55013652	55015081	0	1	1429	0
chr1	55014343	55015188	prostate_carcinoma.5835	0	.	55014343	55015188	0	1	845	0
chr1	55235295	55235619	A549_Myers.4143	0	.	55235295	55235619	0	1	324	0
chr1	55256713	55257312	HeLa_polyA+_Chen.2234	0	.	55256713	55257312	0	1	599	0
chr1	55257530	55258779	HeLa_polyA+_Chen.2236	0	.	55257530	55258779	0	1	1249	0
chr1	55258887	55259575	HeLa_polyA+_Chen.2235	0	.	55258887	55259575	0	1	688	0
chr1	55259667	55261031	HeLa_polyA+_Chen.2237	0	.	55259667	55261031	0	1	1364	0
chr1	55512778	55513917	BT474_Burge_Thompson.2134	0	.	55512778	55513917	0	1	1139	0
chr1	55548227	55548550	B_cells_Cheung.10202	0	.	55548227	55548550	0	1	323	0
chr1	55819297	55973263	HIT000047143	0	+	55819297	55973263	0	3	158,82,3823	0,33884,150143
chr1	55819297	55973263	ENST00000422374	0	+	55819297	55973263	0	3	158,82,3823	0,33884,150143
chr1	56108772	56118344	Rinn_00000951	0	+	56108772	56118344	0	3	65,281,692	0,666,8880
chr1	56109374	56118064	Rinn_00002039	0	+	56109374	56118064	0	2	345,412	0,8278
chr1	56147716	56148112	REMC_MyoepithelialBreast.5620	0	.	56147716	56148112	0	1	396	0
chr1	56211539	56212369	REMC_MyoepithelialBreast.5627	0	.	56211539	56212369	0	1	830	0
chr1	56211615	56212167	B_cells_Cheung.10218	0	.	56211615	56212167	0	1	552	0
chr1	56272906	56275606	B_cells_Cheung.10232	0	.	56272906	56275606	0	1	2700	0
chr1	56276710	56277515	B_Cells_Pritchard.133579	0	.	56276710	56277515	0	1	805	0
chr1	56276769	56278327	B_cells_Cheung.10262	0	.	56276769	56278327	0	1	1558	0
chr1	56278420	56280264	B_cells_Cheung.10263	0	.	56278420	56280264	0	1	1844	0
chr1	56278527	56279120	B_Cells_Pritchard.133593	0	.	56278527	56279120	0	1	593	0
chr1	56280501	56282678	B_cells_Cheung.10264	0	.	56280501	56282678	0	1	2177	0
chr1	56281392	56282584	B_Cells_Pritchard.133601	0	.	56281392	56282584	0	1	1192	0
chr1	56301198	56301881	REMC_MyoepithelialBreast.5641	0	.	56301198	56301881	0	1	683	0
chr1	56333021	56333621	REMC_MyoepithelialBreast.5647	0	.	56333021	56333621	0	1	600	0
chr1	56334205	56334971	REMC_MyoepithelialBreast.5646	0	.	56334205	56334971	0	1	766	0
chr1	56359465	56362043	REMC_MyoepithelialBreast.6437	0	.	56359465	56362043	0	1	2578	0
chr1	56359744	56361744	REMC_LuminalBreast.5978	0	.	56359744	56361744	0	1	2000	0
chr1	56361236	56361565	B_cells_Cheung.10291	0	.	56361236	56361565	0	1	329	0
chr1	56375697	56376748	REMC_MyoepithelialBreast.6444	0	.	56375697	56376748	0	1	1051	0
chr1	56377296	56378999	REMC_MyoepithelialBreast.6445	0	.	56377296	56378999	0	1	1703	0
chr1	56383979	56393484	Rinn_00000208	0	+	56383979	56393484	0	3	162,272,300	0,5280,9205
chr1	56388945	56390163	REMC_MyoepithelialBreast.6452	0	.	56388945	56390163	0	1	1218	0
chr1	56394075	56394699	REMC_MyoepithelialBreast.6456	0	.	56394075	56394699	0	1	624	0
chr1	56395170	56396113	REMC_LuminalBreast.5980	0	.	56395170	56396113	0	1	943	0
chr1	56399436	56404338	REMC_MyoepithelialBreast.6458	0	.	56399436	56404338	0	1	4902	0
chr1	56401686	56404640	REMC_LuminalBreast.5984	0	.	56401686	56404640	0	1	2954	0
chr1	56425885	56427053	REMC_LuminalBreast.5986	0	.	56425885	56427053	0	1	1168	0
chr1	56446735	56449044	REMC_BreastStem.4401	0	.	56446735	56449044	0	1	2309	0
chr1	56449123	56455354	REMC_BreastStem.4402	0	.	56449123	56455354	0	1	6231	0
chr1	56452702	56453169	H1_rRNA-depleted_UCSD_REMC.5388	0	.	56452702	56453169	0	1	467	0
chr1	56463626	56474633	REMC_MyoepithelialBreast.6474	0	.	56463626	56474633	0	1	11007	0
chr1	56463931	56471661	REMC_LuminalBreast.5989	0	.	56463931	56471661	0	1	7730	0
chr1	56467992	56469404	REMC_BreastStem.4406	0	.	56467992	56469404	0	1	1412	0
chr1	56469684	56472431	REMC_BreastStem.4407	0	.	56469684	56472431	0	1	2747	0
chr1	56471805	56474817	REMC_LuminalBreast.5990	0	.	56471805	56474817	0	1	3012	0
chr1	56485116	56487582	REMC_MyoepithelialBreast.6433	0	.	56485116	56487582	0	1	2466	0
chr1	56486344	56487536	REMC_LuminalBreast.5994	0	.	56486344	56487536	0	1	1192	0
chr1	56486599	56487692	MDAMB468_Thompson.1650	0	.	56486599	56487692	0	1	1093	0
chr1	56486704	56487459	H1_polyA+.7241	0	.	56486704	56487459	0	1	755	0
chr1	56486898	56488075	HepG2_Caltech_ENCODE.2288	0	.	56486898	56488075	0	1	1177	0
chr1	56488132	56492155	REMC_LuminalBreast.5995	0	.	56488132	56492155	0	1	4023	0
chr1	56490135	56491126	prostate_carcinoma.5892	0	.	56490135	56491126	0	1	991	0
chr1	56490211	56491549	REMC_BreastStem.4408	0	.	56490211	56491549	0	1	1338	0
chr1	56493910	56498561	REMC_LuminalBreast.5996	0	.	56493910	56498561	0	1	4651	0
chr1	56498804	56503689	REMC_LuminalBreast.5997	0	.	56498804	56503689	0	1	4885	0
chr1	56534103	56534907	REMC_LuminalBreast.6006	0	.	56534103	56534907	0	1	804	0
chr1	56548804	56550661	REMC_LuminalBreast.6012	0	.	56548804	56550661	0	1	1857	0
chr1	56550779	56552282	REMC_LuminalBreast.6013	0	.	56550779	56552282	0	1	1503	0
chr1	56558920	56559709	B_cells_Cheung.10297	0	.	56558920	56559709	0	1	789	0
chr1	56565368	56567102	REMC_LuminalBreast.6629	0	.	56565368	56567102	0	1	1734	0
chr1	56572525	56575558	REMC_LuminalBreast.6632	0	.	56572525	56575558	0	1	3033	0
chr1	56573207	56574303	REMC_MyoepithelialBreast.6507	0	.	56573207	56574303	0	1	1096	0
chr1	56579150	56579635	REMC_MyoepithelialBreast.6510	0	.	56579150	56579635	0	1	485	0
chr1	56610101	56620717	REMC_LuminalBreast.6650	0	.	56610101	56620717	0	1	10616	0
chr1	56618368	56620661	REMC_MyoepithelialBreast.6539	0	.	56618368	56620661	0	1	2293	0
chr1	56618452	56620615	REMC_BreastStem.4423	0	.	56618452	56620615	0	1	2163	0
chr1	56620792	56631975	REMC_LuminalBreast.6651	0	.	56620792	56631975	0	1	11183	0
chr1	56626531	56628983	REMC_BreastStem.4426	0	.	56626531	56628983	0	1	2452	0
chr1	56627402	56628724	REMC_MyoepithelialBreast.6546	0	.	56627402	56628724	0	1	1322	0
chr1	56632121	56640326	REMC_LuminalBreast.6652	0	.	56632121	56640326	0	1	8205	0
chr1	56634766	56636064	REMC_MyoepithelialBreast.6553	0	.	56634766	56636064	0	1	1298	0
chr1	56641166	56685187	REMC_LuminalBreast.6654	0	-	56641166	56685187	0	2	3162,728	0,43293
chr1	56645074	56646224	REMC_BreastStem.4432	0	.	56645074	56646224	0	1	1150	0
chr1	56649326	56651162	H1_polyA+.7252	0	.	56649326	56651162	0	1	1836	0
chr1	56650133	56650988	HepG2_Caltech_ENCODE.2289	0	.	56650133	56650988	0	1	855	0
chr1	56650432	56651260	prostate_carcinoma.5895	0	.	56650432	56651260	0	1	828	0
chr1	56650442	56651175	prostate_normal.3765	0	.	56650442	56651175	0	1	733	0
chr1	56652877	56655278	prostate_carcinoma.5898	0	.	56652877	56655278	0	1	2401	0
chr1	56652914	56658644	REMC_MyoepithelialBreast.6565	0	.	56652914	56658644	0	1	5730	0
chr1	56652991	56658610	H1_polyA+.7254	0	.	56652991	56658610	0	1	5619	0
chr1	56653147	56655304	liver_polyA+.7882	0	.	56653147	56655304	0	1	2157	0
chr1	56653173	56655280	HepG2_Caltech_ENCODE.2292	0	+	56653173	56655280	0	2	237,1773	0,334
chr1	56654934	56655521	prostate_normal.3768	0	.	56654934	56655521	0	1	587	0
chr1	56663665	56664781	HepG2_Caltech_ENCODE.2291	0	.	56663665	56664781	0	1	1116	0
chr1	56663854	56664780	MIP101.4087	0	.	56663854	56664780	0	1	926	0
chr1	56664120	56665464	H1_polyA+.7250	0	.	56664120	56665464	0	1	1344	0
chr1	56669527	56671029	REMC_MyoepithelialBreast.6570	0	.	56669527	56671029	0	1	1502	0
chr1	56669529	56675354	REMC_BreastStem.4433	0	.	56669529	56675354	0	1	5825	0
chr1	56671105	56673836	REMC_MyoepithelialBreast.6571	0	-	56671105	56673836	0	2	49,2528	0,203
chr1	56671121	56672057	H1_polyA+.7258	0	.	56671121	56672057	0	1	936	0
chr1	56671264	56671910	liver_polyA+.7888	0	.	56671264	56671910	0	1	646	0
chr1	56671297	56671827	REMC_LuminalBreast.6657	0	.	56671297	56671827	0	1	530	0
chr1	56671874	56673194	REMC_LuminalBreast.6658	0	.	56671874	56673194	0	1	1320	0
chr1	56684388	56686981	REMC_LuminalBreast.6655	0	.	56684388	56686981	0	1	2593	0
chr1	56684406	56701169	REMC_BreastStem.4436	0	.	56684406	56701169	0	1	16763	0
chr1	56684482	56684981	liver_polyA+.7890	0	.	56684482	56684981	0	1	499	0
chr1	56684510	56689058	REMC_MyoepithelialBreast.6577	0	.	56684510	56689058	0	1	4548	0
chr1	56687446	56688406	H1_polyA+.7260	0	.	56687446	56688406	0	1	960	0
chr1	56688114	56690356	REMC_LuminalBreast.6669	0	.	56688114	56690356	0	1	2242	0
chr1	56689360	56690108	H1_polyA+.7261	0	.	56689360	56690108	0	1	748	0
chr1	56689546	56691220	REMC_MyoepithelialBreast.6579	0	.	56689546	56691220	0	1	1674	0
chr1	56698807	56700860	REMC_MyoepithelialBreast.6584	0	.	56698807	56700860	0	1	2053	0
chr1	56701308	56705275	REMC_MyoepithelialBreast.6585	0	.	56701308	56705275	0	1	3967	0
chr1	56702229	56705544	REMC_LuminalBreast.6675	0	.	56702229	56705544	0	1	3315	0
chr1	56715779	56716353	liver_polyA+.7912	0	.	56715779	56716353	0	1	574	0
chr1	56716216	56717417	H1_polyA+.7415	0	.	56716216	56717417	0	1	1201	0
chr1	57159477	57160360	liver_polyA+.11884	0	.	57159477	57160360	0	1	883	0
chr1	58949786	58952294	khalil_39	0	.	58949786	58952294	0	2	25,617	0,1891
chr1	58952011	58952712	REMC_LuminalBreast.29899	0	.	58952011	58952712	0	1	701	0
chr1	58956781	58958759	HeLa_polyA+_Chen.2255	0	.	58956781	58958759	0	1	1978	0
chr1	58957555	58958559	prostate_carcinoma.6022	0	.	58957555	58958559	0	1	1004	0
chr1	58957733	58958566	B_cells_Cheung.10485	0	.	58957733	58958566	0	1	833	0
chr1	58957899	58958551	B_Cells_Pritchard.139607	0	.	58957899	58958551	0	1	652	0
chr1	58959522	58960337	REMC_BreastStem.3092	0	.	58959522	58960337	0	1	815	0
chr1	58969443	58971524	REMC_MyoepithelialBreast.13733	0	.	58969443	58971524	0	1	2081	0
chr1	58971696	58976218	REMC_MyoepithelialBreast.13734	0	.	58971696	58976218	0	1	4522	0
chr1	58996741	58998058	MDAMB231_Thompson.1454	0	.	58996741	58998058	0	1	1317	0
chr1	58997287	58998469	REMC_BreastStem.3094	0	.	58997287	58998469	0	1	1182	0
chr1	58999196	59003565	HeLa_polyA+_Chen.2254	0	.	58999196	59003565	0	1	4369	0
chr1	58999248	59004543	REMC_LuminalBreast.6184	0	.	58999248	59004543	0	1	5295	0
chr1	58999589	59003429	MCF10A_Thompson.1420	0	.	58999589	59003429	0	1	3840	0
chr1	58999928	59002010	MDAMB231_Thompson.1455	0	.	58999928	59002010	0	1	2082	0
chr1	59001040	59001896	HepG2_Caltech_ENCODE.2348	0	.	59001040	59001896	0	1	856	0
chr1	59009647	59014795	REMC_MyoepithelialBreast.13739	0	.	59009647	59014795	0	1	5148	0
chr1	59009707	59011532	REMC_LuminalBreast.6189	0	.	59009707	59011532	0	1	1825	0
chr1	59010359	59011153	REMC_BreastStem.3095	0	.	59010359	59011153	0	1	794	0
chr1	59010401	59011046	HeLa_polyA+_Chen.2271	0	.	59010401	59011046	0	1	645	0
chr1	59010403	59011056	prostate_carcinoma.6027	0	.	59010403	59011056	0	1	653	0
chr1	59011523	59012706	REMC_BreastStem.3096	0	.	59011523	59012706	0	1	1183	0
chr1	59023389	59024344	B_cells_Cheung.10514	0	.	59023389	59024344	0	1	955	0
chr1	59023402	59024355	CD4_Plagnol_resting.4591	0	.	59023402	59024355	0	1	953	0
chr1	59023408	59137972	HIT000490922	0	+	59023408	59137972	0	3	157,173,666	0,108396,113898
chr1	59023410	59137972	NR_034015	0	+	59023410	59137972	0	3	155,173,666	0,108394,113896
chr1	59037042	59038083	B_Cells_Pritchard.139887	0	.	59037042	59038083	0	1	1041	0
chr1	59043115	59043441	B_cells_Cheung.10521	0	.	59043115	59043441	0	1	326	0
chr1	59043521	59046911	B_Cells_Pritchard.139913	0	.	59043521	59046911	0	1	3390	0
chr1	59046033	59046922	B_cells_Cheung.10527	0	.	59046033	59046922	0	1	889	0
chr1	59046552	59046915	CD4_Plagnol_resting.4593	0	.	59046552	59046915	0	1	363	0
chr1	59047188	59054899	prostate_carcinoma.6034	0	.	59047188	59054899	0	1	7711	0
chr1	59047188	59054243	prostate_carcinoma.6033	0	+	59047188	59054243	0	2	5584,716	0,6339
chr1	59048334	59050465	B_Cells_Pritchard.139917	0	.	59048334	59050465	0	1	2131	0
chr1	59048923	59049871	B_cells_Cheung.10529	0	.	59048923	59049871	0	1	948	0
chr1	59050606	59055664	B_Cells_Pritchard.139919	0	.	59050606	59055664	0	1	5058	0
chr1	59050786	59052587	B_cells_Cheung.10532	0	.	59050786	59052587	0	1	1801	0
chr1	59050949	59052905	REMC_MyoepithelialBreast.5688	0	.	59050949	59052905	0	1	1956	0
chr1	59050960	59052787	MIP101.4135	0	.	59050960	59052787	0	1	1827	0
chr1	59050996	59054625	REMC_LuminalBreast.6194	0	+	59050996	59054625	0	3	1776,165,1098	0,2099,2531
chr1	59051789	59054605	prostate_normal.3829	0	.	59051789	59054605	0	1	2816	0
chr1	59051937	59052682	brain_AmbionMAQC.2953	0	.	59051937	59052682	0	1	745	0
chr1	59052470	59054280	BT20_Thompson.1472	0	.	59052470	59054280	0	1	1810	0
chr1	59052714	59054401	MDAMB468_Thompson.1662	0	-	59052714	59054401	0	2	56,876	0,811
chr1	59052893	59054676	MIP101.4136	0	.	59052893	59054676	0	1	1783	0
chr1	59053173	59054514	CD4_Plagnol_resting.4595	0	.	59053173	59054514	0	1	1341	0
chr1	59053427	59054242	T47D_Burge_Thompson.1920	0	.	59053427	59054242	0	1	815	0
chr1	59053430	59056228	B_cells_Cheung.10515	0	.	59053430	59056228	0	1	2798	0
chr1	59053435	59054280	CD4_Plagnol_activated.4740	0	.	59053435	59054280	0	1	845	0
chr1	59053521	59053949	lymph_node_Burge.3524	0	.	59053521	59053949	0	1	428	0
chr1	59053545	59054280	HepG2_Caltech_ENCODE.2352	0	.	59053545	59054280	0	1	735	0
chr1	59053546	59054225	MDAMB231_Thompson.1470	0	.	59053546	59054225	0	1	679	0
chr1	59053587	59054301	melanoma_Garraway_short_term_cultures.4339	0	.	59053587	59054301	0	1	714	0
chr1	59053694	59054327	testes_Burge.3730	0	.	59053694	59054327	0	1	633	0
chr1	59053761	59054561	REMC_MyoepithelialBreast.5690	0	.	59053761	59054561	0	1	800	0
chr1	59053763	59054223	liver_polyA+.8111	0	.	59053763	59054223	0	1	460	0
chr1	59062765	59063718	prostate_carcinoma.6036	0	.	59062765	59063718	0	1	953	0
chr1	59062838	59063478	B_cells_Cheung.10536	0	.	59062838	59063478	0	1	640	0
chr1	59062908	59063770	B_Cells_Pritchard.139959	0	.	59062908	59063770	0	1	862	0
chr1	59087217	59087811	B_Cells_Pritchard.140063	0	.	59087217	59087811	0	1	594	0
chr1	59121491	59121954	A549_Myers.4255	0	.	59121491	59121954	0	1	463	0
chr1	59123485	59125586	B_cells_Cheung.10542	0	.	59123485	59125586	0	1	2101	0
chr1	59123760	59126592	B_Cells_Pritchard.140241	0	.	59123760	59126592	0	1	2832	0
chr1	59124194	59126677	prostate_carcinoma.6040	0	.	59124194	59126677	0	1	2483	0
chr1	59125489	59126541	REMC_MyoepithelialBreast.5697	0	.	59125489	59126541	0	1	1052	0
chr1	59125760	59126727	B_cells_Cheung.10543	0	.	59125760	59126727	0	1	967	0
chr1	59136604	59139761	prostate_carcinoma.6041	0	.	59136604	59139761	0	1	3157	0
chr1	59136799	59139799	REMC_MyoepithelialBreast.5698	0	.	59136799	59139799	0	1	3000	0
chr1	59137069	59139343	B_cells_Cheung.10546	0	.	59137069	59139343	0	1	2274	0
chr1	59137177	59138352	B_Cells_Pritchard.140297	0	-	59137177	59138352	0	1	1175	0
chr1	59137303	59138222	brain_AmbionMAQC.2954	0	.	59137303	59138222	0	1	919	0
chr1	59137327	59139252	prostate_normal.3835	0	.	59137327	59139252	0	1	1925	0
chr1	59137700	59139352	REMC_LuminalBreast.6197	0	.	59137700	59139352	0	1	1652	0
chr1	59137799	59138931	MCF7_Burge_Thompson.1964	0	.	59137799	59138931	0	1	1132	0
chr1	59141732	59142343	prostate_carcinoma.6042	0	.	59141732	59142343	0	1	611	0
chr1	59142157	59142484	A549_Myers.4257	0	.	59142157	59142484	0	1	327	0
chr1	59161079	59161848	prostate_carcinoma.6044	0	.	59161079	59161848	0	1	769	0
chr1	59182614	59183056	A549_Myers.4258	0	.	59182614	59183056	0	1	442	0
chr1	59259718	59274090	B_Cells_Pritchard.140625	0	-	59259718	59274090	0	4	274,1735,3104,4457	0,357,3295,9915
chr1	59284715	59288890	B_Cells_Pritchard.140621	0	.	59284715	59288890	0	1	4175	0
chr1	59294392	59296780	prostate_carcinoma.6046	0	.	59294392	59296780	0	1	2388	0
chr1	59294526	59296052	prostate_normal.3836	0	.	59294526	59296052	0	1	1526	0
chr1	59294526	59311085	prostate_normal.3837	0	+	59294526	59311085	0	3	483,765,393	0,5153,16166
chr1	59295095	59296643	B_Cells_Pritchard.140717	0	-	59295095	59296643	0	1	1548	0
chr1	59296837	59298274	prostate_carcinoma.6048	0	.	59296837	59298274	0	1	1437	0
chr1	59296999	59297578	prostate_normal.3838	0	.	59296999	59297578	0	1	579	0
chr1	59299020	59303440	prostate_carcinoma.6047	0	.	59299020	59303440	0	1	4420	0
chr1	59301076	59303474	B_Cells_Pritchard.140653	0	.	59301076	59303474	0	1	2398	0
chr1	59301090	59302539	prostate_normal.3841	0	.	59301090	59302539	0	1	1449	0
chr1	59331250	59332780	B_cells_Cheung.10691	0	.	59331250	59332780	0	1	1530	0
chr1	59384443	59385233	B_cells_Cheung.10559	0	.	59384443	59385233	0	1	790	0
chr1	59384788	59385537	B_Cells_Pritchard.140865	0	.	59384788	59385537	0	1	749	0
chr1	59527609	59534439	H1_polyA+.7557	0	-	59527609	59534439	0	4	2019,614,656,310	0,3427,5759,6520
chr1	59527609	59530738	H1_polyA+.7556	0	.	59527609	59530738	0	1	3129	0
chr1	59527612	59530315	REMC_LuminalBreast.6245	0	.	59527612	59530315	0	1	2703	0
chr1	59527672	59530934	prostate_carcinoma.6058	0	.	59527672	59530934	0	1	3262	0
chr1	59527829	59529431	melanoma_Garraway_short_term_cultures.4341	0	.	59527829	59529431	0	1	1602	0
chr1	59527834	59529570	prostate_normal.3843	0	.	59527834	59529570	0	1	1736	0
chr1	59528554	59529614	B_Cells_Pritchard.141201	0	.	59528554	59529614	0	1	1060	0
chr1	59528677	59529566	REMC_MyoepithelialBreast.5704	0	.	59528677	59529566	0	1	889	0
chr1	59533379	59533720	NEC_from_H9.4939	0	.	59533379	59533720	0	1	341	0
chr1	60014796	60016573	H1_polyA+.7548	0	.	60014796	60016573	0	1	1777	0
chr1	60014964	60015821	B_Cells_Pritchard.142535	0	.	60014964	60015821	0	1	857	0
chr1	60014981	60015468	REMC_LuminalBreast.6266	0	.	60014981	60015468	0	1	487	0
chr1	60023457	60023882	B_Cells_Pritchard.142567	0	.	60023457	60023882	0	1	425	0
chr1	60023495	60023960	prostate_carcinoma.6076	0	.	60023495	60023960	0	1	465	0
chr1	60024474	60025743	REMC_LuminalBreast.6273	0	.	60024474	60025743	0	1	1269	0
chr1	60127260	60128188	REMC_MyoepithelialBreast.5739	0	.	60127260	60128188	0	1	928	0
chr1	60578029	60579404	MIP101.4179	0	.	60578029	60579404	0	1	1375	0
chr1	60780118	60781239	MIP101.4196	0	.	60780118	60781239	0	1	1121	0
chr1	60794641	60798111	prostate_carcinoma.6101	0	.	60794641	60798111	0	1	3470	0
chr1	60802244	60807316	MIP101.4202	0	.	60802244	60807316	0	1	5072	0
chr1	60802803	60803741	prostate_normal.3876	0	.	60802803	60803741	0	1	938	0
chr1	60802805	60807607	prostate_carcinoma.6105	0	.	60802805	60807607	0	1	4802	0
chr1	60803045	60803881	melanoma_Garraway_short_term_cultures.4350	0	.	60803045	60803881	0	1	836	0
chr1	60803169	60804040	K562.2918	0	.	60803169	60804040	0	1	871	0
chr1	60803257	60804107	H1_polyA+.7569	0	.	60803257	60804107	0	1	850	0
chr1	60826322	60828547	K562.2925	0	.	60826322	60828547	0	1	2225	0
chr1	60830765	60832829	K562.2926	0	.	60830765	60832829	0	1	2064	0
chr1	60836248	60837296	prostate_carcinoma.6114	0	.	60836248	60837296	0	1	1048	0
chr1	60851931	60862376	MIP101.4226	0	.	60851931	60862376	0	1	10445	0
chr1	60855316	60855866	H1_rRNA-depleted_UCSD_REMC.5635	0	.	60855316	60855866	0	1	550	0
chr1	60867859	60871474	MIP101.4229	0	.	60867859	60871474	0	1	3615	0
chr1	60869997	60870776	prostate_carcinoma.6120	0	.	60869997	60870776	0	1	779	0
chr1	61722427	61725510	pHIT000001580	0	-	61722427	61725510	0	3	495,126,36	0,2401,3047
chr1	61779552	61785139	REMC_BreastStem.3139	0	.	61779552	61785139	0	1	5587	0
chr1	61780870	61781902	REMC_LuminalBreast.6217	0	.	61780870	61781902	0	1	1032	0
chr1	61781991	61782877	REMC_LuminalBreast.6218	0	.	61781991	61782877	0	1	886	0
chr1	61785197	61787117	REMC_BreastStem.3140	0	.	61785197	61787117	0	1	1920	0
chr1	61785259	61789752	REMC_MyoepithelialBreast.5769	0	.	61785259	61789752	0	1	4493	0
chr1	61787236	61790080	REMC_BreastStem.3141	0	.	61787236	61790080	0	1	2844	0
chr1	61787955	61788655	T47D_Burge_Thompson.1933	0	.	61787955	61788655	0	1	700	0
chr1	61788010	61788520	REMC_LuminalBreast.6224	0	.	61788010	61788520	0	1	510	0
chr1	61883276	61884276	REMC_LuminalBreast.6228	0	.	61883276	61884276	0	1	1000	0
chr1	61901361	61902333	REMC_LuminalBreast.6234	0	.	61901361	61902333	0	1	972	0
chr1	61910390	61913627	REMC_LuminalBreast.6238	0	-	61910390	61913627	0	2	714,1593	0,1644
chr1	61911570	61912361	B_Cells_Pritchard.146405	0	-	61911570	61912361	0	1	791	0
chr1	61915268	61915728	REMC_LuminalBreast.6240	0	.	61915268	61915728	0	1	460	0
chr1	62404857	62405503	H1_polyA+.7589	0	.	62404857	62405503	0	1	646	0
chr1	62410433	62411518	REMC_LuminalBreast.6576	0	.	62410433	62411518	0	1	1085	0
chr1	62410441	62411333	H1_polyA+.7594	0	.	62410441	62411333	0	1	892	0
chr1	62410476	62411271	REMC_MyoepithelialBreast.6017	0	.	62410476	62411271	0	1	795	0
chr1	62411920	62414773	REMC_LuminalBreast.6577	0	.	62411920	62414773	0	1	2853	0
chr1	62411981	62414791	REMC_MyoepithelialBreast.6018	0	.	62411981	62414791	0	1	2810	0
chr1	62412979	62414272	H1_polyA+.7595	0	.	62412979	62414272	0	1	1293	0
chr1	62414895	62417894	REMC_LuminalBreast.6578	0	.	62414895	62417894	0	1	2999	0
chr1	62414913	62418393	REMC_MyoepithelialBreast.6019	0	.	62414913	62418393	0	1	3480	0
chr1	62418456	62419629	REMC_LuminalBreast.6290	0	.	62418456	62419629	0	1	1173	0
chr1	62418534	62419563	REMC_MyoepithelialBreast.5778	0	.	62418534	62419563	0	1	1029	0
chr1	62420005	62420666	REMC_MyoepithelialBreast.5779	0	.	62420005	62420666	0	1	661	0
chr1	62420051	62420645	REMC_LuminalBreast.6291	0	.	62420051	62420645	0	1	594	0
chr1	62464716	62467599	REMC_MyoepithelialBreast.5785	0	+	62464716	62467599	0	2	437,1180	0,1703
chr1	62464978	62467415	H1_rRNA-depleted_UCSD_REMC.5713	0	+	62464978	62467415	0	3	175,191,691	0,1441,1746
chr1	62466062	62467407	B_cells_Cheung.10669	0	.	62466062	62467407	0	1	1345	0
chr1	62466145	62467599	REMC_MyoepithelialBreast.5787	0	.	62466145	62467599	0	1	1454	0
chr1	62466302	62468155	REMC_BreastStem.3156	0	+	62466302	62468155	0	2	1100,138	0,1715
chr1	62466990	62470152	NEC_from_H9.4999	0	+	62466990	62470152	0	2	758,718	0,2444
chr1	62467465	62467916	B_cells_Cheung.10670	0	.	62467465	62467916	0	1	451	0
chr1	62467506	62467920	H1_rRNA-depleted_UCSD_REMC.5714	0	.	62467506	62467920	0	1	414	0
chr1	62664721	62665886	REMC_LuminalBreast.6298	0	.	62664721	62665886	0	1	1165	0
chr1	62672292	62673067	REMC_MyoepithelialBreast.5794	0	.	62672292	62673067	0	1	775	0
chr1	62672894	62673348	B_Cells_Pritchard.148981	0	.	62672894	62673348	0	1	454	0
chr1	62672896	62673357	B_cells_Cheung.10701	0	.	62672896	62673357	0	1	461	0
chr1	62926739	62948953	Rinn_00000214	0	+	62926739	62948953	0	2	172,1058	0,21156
chr1	62926740	62948968	HIT000092210	0	+	62926740	62948968	0	2	171,1072	0,21156
chr1	62926740	62948953	ENST00000453229	0	+	62926740	62948953	0	2	171,1057	0,21156
chr1	62926805	62949572	REMC_LuminalBreast.6359	0	+	62926805	62949572	0	2	106,1676	0,21091
chr1	62927810	62930366	B_cells_Cheung.10704	0	.	62927810	62930366	0	1	2556	0
chr1	62927842	62929237	melanoma_Garraway_short_term_cultures.4406	0	.	62927842	62929237	0	1	1395	0
chr1	62928202	62929893	prostate_carcinoma.6313	0	.	62928202	62929893	0	1	1691	0
chr1	62928239	62929106	NEC_from_H9.5047	0	.	62928239	62929106	0	1	867	0
chr1	62928280	62929528	REMC_LuminalBreast.6361	0	.	62928280	62929528	0	1	1248	0
chr1	62928514	62929214	MeWo_Garraway.2385	0	.	62928514	62929214	0	1	700	0
chr1	62944123	62946740	H1_polyA+.7651	0	.	62944123	62946740	0	1	2617	0
chr1	62945080	62946736	B_cells_Cheung.10712	0	.	62945080	62946736	0	1	1656	0
chr1	62945390	62946034	liver_polyA+.8696	0	.	62945390	62946034	0	1	644	0
chr1	62945453	62946655	melanoma_Garraway_short_term_cultures.4411	0	.	62945453	62946655	0	1	1202	0
chr1	62945476	62946506	REMC_LuminalBreast.6363	0	.	62945476	62946506	0	1	1030	0
chr1	62945502	62946540	REMC_MyoepithelialBreast.5847	0	.	62945502	62946540	0	1	1038	0
chr1	62946895	62949513	B_cells_Cheung.10713	0	.	62946895	62949513	0	1	2618	0
chr1	62946918	62953648	H1_polyA+.7652	0	.	62946918	62953648	0	1	6730	0
chr1	62946936	62949572	REMC_LuminalBreast.6358	0	.	62946936	62949572	0	1	2636	0
chr1	62947540	62949512	melanoma_Garraway_short_term_cultures.4413	0	.	62947540	62949512	0	1	1972	0
chr1	62947554	62949101	REMC_MyoepithelialBreast.5848	0	.	62947554	62949101	0	1	1547	0
chr1	62947903	62948886	prostate_carcinoma.6315	0	.	62947903	62948886	0	1	983	0
chr1	62947932	62949516	REMC_BreastStem.3165	0	.	62947932	62949516	0	1	1584	0
chr1	62948394	62949210	B_Cells_Pritchard.149399	0	-	62948394	62949210	0	1	816	0
chr1	62948440	62949022	NEC_from_H9.5052	0	.	62948440	62949022	0	1	582	0
chr1	62948520	62949200	liver_polyA+.8701	0	.	62948520	62949200	0	1	680	0
chr1	62949630	62951381	melanoma_Garraway_short_term_cultures.4414	0	.	62949630	62951381	0	1	1751	0
chr1	62949630	62951420	B_cells_Cheung.10714	0	.	62949630	62951420	0	1	1790	0
chr1	62949635	62950903	REMC_BreastStem.3166	0	.	62949635	62950903	0	1	1268	0
chr1	62949641	62952479	REMC_LuminalBreast.6364	0	.	62949641	62952479	0	1	2838	0
chr1	62950093	62950456	liver_polyA+.8702	0	.	62950093	62950456	0	1	363	0
chr1	62950229	62951446	REMC_MyoepithelialBreast.5850	0	.	62950229	62951446	0	1	1217	0
chr1	62951060	62952825	REMC_BreastStem.3167	0	.	62951060	62952825	0	1	1765	0
chr1	62952616	62953766	B_cells_Cheung.10716	0	.	62952616	62953766	0	1	1150	0
chr1	62965752	62966612	REMC_BreastStem.3169	0	.	62965752	62966612	0	1	860	0
chr1	62977968	62979061	REMC_LuminalBreast.6369	0	.	62977968	62979061	0	1	1093	0
chr1	63139790	63141201	REMC_LuminalBreast.6375	0	.	63139790	63141201	0	1	1411	0
chr1	63238755	63250730	ENST00000420659	0	-	63238755	63250730	0	2	307,138	0,11837
chr1	63555105	63555538	A549_Myers.4352	0	.	63555105	63555538	0	1	433	0
chr1	63559142	63560695	ENST00000418244	0	-	63559142	63560695	0	4	307,97,416,121	0,483,781,1432
chr1	63559142	63560717	ENST00000449386	0	-	63559142	63560717	0	3	307,97,143	0,483,1432
chr1	63559623	63560377	NEC_from_H9.5073	0	-	63559623	63560377	0	2	99,528	0,226
chr1	63565786	63566514	B_Cells_Pritchard.150885	0	.	63565786	63566514	0	1	728	0
chr1	63900585	63902169	REMC_LuminalBreast.6395	0	.	63900585	63902169	0	1	1584	0
chr1	63901103	63902388	REMC_MyoepithelialBreast.5882	0	.	63901103	63902388	0	1	1285	0
chr1	63901154	63901930	B_cells_Cheung.11258	0	.	63901154	63901930	0	1	776	0
chr1	63904185	63905137	REMC_MyoepithelialBreast.5883	0	.	63904185	63905137	0	1	952	0
chr1	63906865	63908418	REMC_MyoepithelialBreast.5884	0	.	63906865	63908418	0	1	1553	0
chr1	63924831	63927741	B_cells_Cheung.11269	0	.	63924831	63927741	0	1	2910	0
chr1	63928111	63928627	B_Cells_Pritchard.151711	0	-	63928111	63928627	0	1	516	0
chr1	63938998	63940181	REMC_MyoepithelialBreast.5892	0	.	63938998	63940181	0	1	1183	0
chr1	63939488	63939842	B_cells_Cheung.11277	0	.	63939488	63939842	0	1	354	0
chr1	63944137	63945875	B_cells_Cheung.11280	0	.	63944137	63945875	0	1	1738	0
chr1	63953483	63955254	B_cells_Cheung.11285	0	.	63953483	63955254	0	1	1771	0
chr1	63963422	63964835	REMC_MyoepithelialBreast.5896	0	.	63963422	63964835	0	1	1413	0
chr1	63965992	63966654	B_Cells_Pritchard.151873	0	-	63965992	63966654	0	2	54,387	0,275
chr1	63966134	63966750	REMC_MyoepithelialBreast.5898	0	.	63966134	63966750	0	1	616	0
chr1	63966299	63967124	REMC_LuminalBreast.6398	0	.	63966299	63967124	0	1	825	0
chr1	64587340	64588162	H1_polyA+.7695	0	.	64587340	64588162	0	1	822	0
chr1	64936092	64939634	REMC_MyoepithelialBreast.5924	0	.	64936092	64939634	0	1	3542	0
chr1	64937211	64938244	REMC_LuminalBreast.6402	0	.	64937211	64938244	0	1	1033	0
chr1	65211370	65211895	REMC_MyoepithelialBreast.6021	0	.	65211370	65211895	0	1	525	0
chr1	65211427	65212807	REMC_LuminalBreast.6801	0	.	65211427	65212807	0	1	1380	0
chr1	65212129	65213230	REMC_MyoepithelialBreast.6022	0	.	65212129	65213230	0	1	1101	0
chr1	65212307	65215343	prostate_carcinoma.6482	0	+	65212307	65215343	0	2	863,1986	0,1050
chr1	65213380	65214990	prostate_normal.4045	0	.	65213380	65214990	0	1	1610	0
chr1	65213491	65214552	H1_polyA+.7843	0	.	65213491	65214552	0	1	1061	0
chr1	65213674	65215730	REMC_LuminalBreast.6802	0	.	65213674	65215730	0	1	2056	0
chr1	65214344	65215277	REMC_MyoepithelialBreast.6023	0	.	65214344	65215277	0	1	933	0
chr1	65219392	65221085	prostate_normal.4047	0	.	65219392	65221085	0	1	1693	0
chr1	65219445	65222680	prostate_carcinoma.6484	0	.	65219445	65222680	0	1	3235	0
chr1	65219458	65220363	REMC_MyoepithelialBreast.6026	0	.	65219458	65220363	0	1	905	0
chr1	65227763	65228793	REMC_MyoepithelialBreast.6031	0	.	65227763	65228793	0	1	1030	0
chr1	65229209	65230565	REMC_MyoepithelialBreast.6033	0	.	65229209	65230565	0	1	1356	0
chr1	65231142	65231847	H1_polyA+.7851	0	.	65231142	65231847	0	1	705	0
chr1	65231268	65231853	prostate_carcinoma.6497	0	.	65231268	65231853	0	1	585	0
chr1	65231290	65231892	REMC_MyoepithelialBreast.6034	0	.	65231290	65231892	0	1	602	0
chr1	65238682	65241207	REMC_LuminalBreast.6812	0	.	65238682	65241207	0	1	2525	0
chr1	65238776	65241130	REMC_MyoepithelialBreast.6038	0	.	65238776	65241130	0	1	2354	0
chr1	65239676	65241247	H1_polyA+.7856	0	.	65239676	65241247	0	1	1571	0
chr1	65239800	65240946	REMC_BreastStem.3606	0	.	65239800	65240946	0	1	1146	0
chr1	65240803	65241666	A549_Myers.4430	0	.	65240803	65241666	0	1	863	0
chr1	65240925	65241546	breast_Burge.2876	0	.	65240925	65241546	0	1	621	0
chr1	65240974	65241360	CD4_Plagnol_resting.4771	0	.	65240974	65241360	0	1	386	0
chr1	65241195	65243439	REMC_MyoepithelialBreast.6039	0	.	65241195	65243439	0	1	2244	0
chr1	65251499	65252955	REMC_LuminalBreast.6815	0	.	65251499	65252955	0	1	1456	0
chr1	65251662	65252945	H1_polyA+.7863	0	.	65251662	65252945	0	1	1283	0
chr1	65251736	65253045	REMC_MyoepithelialBreast.6042	0	.	65251736	65253045	0	1	1309	0
chr1	65252360	65252954	REMC_BreastStem.3613	0	.	65252360	65252954	0	1	594	0
chr1	65257184	65258104	REMC_MyoepithelialBreast.6045	0	.	65257184	65258104	0	1	920	0
chr1	65257191	65257644	REMC_LuminalBreast.6818	0	.	65257191	65257644	0	1	453	0
chr1	65258526	65260769	prostate_carcinoma.6508	0	.	65258526	65260769	0	1	2243	0
chr1	65258900	65260183	REMC_BreastStem.3617	0	.	65258900	65260183	0	1	1283	0
chr1	65261478	65264729	REMC_BreastStem.3619	0	.	65261478	65264729	0	1	3251	0
chr1	65262052	65262769	CD4_Plagnol_resting.4772	0	.	65262052	65262769	0	1	717	0
chr1	65262064	65262836	melanoma_Garraway_short_term_cultures.4496	0	.	65262064	65262836	0	1	772	0
chr1	65269097	65271644	REMC_LuminalBreast.6822	0	.	65269097	65271644	0	1	2547	0
chr1	65269101	65273208	REMC_MyoepithelialBreast.6047	0	.	65269101	65273208	0	1	4107	0
chr1	65270518	65271537	H1_polyA+.7874	0	.	65270518	65271537	0	1	1019	0
chr1	65270552	65271470	REMC_BreastStem.3623	0	.	65270552	65271470	0	1	918	0
chr1	65270612	65271526	prostate_carcinoma.6513	0	.	65270612	65271526	0	1	914	0
chr1	65273345	65292714	REMC_LuminalBreast.6824	0	-	65273345	65292714	0	3	1409,4445,4584	0,9405,14785
chr1	65273353	65285793	REMC_MyoepithelialBreast.6048	0	.	65273353	65285793	0	1	12440	0
chr1	65274180	65276468	REMC_BreastStem.3625	0	.	65274180	65276468	0	2	1805,324	0,1964
chr1	65274366	65276496	H1_polyA+.7877	0	.	65274366	65276496	0	1	2130	0
chr1	65282091	65285793	REMC_BreastStem.3630	0	.	65282091	65285793	0	1	3702	0
chr1	65282244	65285748	H1_polyA+.7881	0	.	65282244	65285748	0	1	3504	0
chr1	65284519	65285730	CD4_Plagnol_resting.4780	0	.	65284519	65285730	0	1	1211	0
chr1	65285153	65291299	brain_AmbionMAQC.3046	0	+	65285153	65291299	0	2	10,883	0,5263
chr1	65285893	65296704	REMC_MyoepithelialBreast.6049	0	-	65285893	65296704	0	2	1302,8574	0,2237
chr1	65285893	65296704	REMC_MyoepithelialBreast.6050	0	.	65285893	65296704	0	1	10811	0
chr1	65286460	65287511	CD4_Plagnol_activated.4889	0	.	65286460	65287511	0	1	1051	0
chr1	65286965	65287596	CD4_Plagnol_resting.4781	0	.	65286965	65287596	0	1	631	0
chr1	65289531	65290252	MIP101.4463	0	.	65289531	65290252	0	1	721	0
chr1	65289562	65292473	REMC_BreastStem.3632	0	.	65289562	65292473	0	1	2911	0
chr1	65289564	65290681	CD4_Plagnol_resting.4785	0	.	65289564	65290681	0	1	1117	0
chr1	65289611	65291299	brain_AmbionMAQC.3045	0	.	65289611	65291299	0	1	1688	0
chr1	65289619	65290699	B_cells_Cheung.11290	0	.	65289619	65290699	0	1	1080	0
chr1	65289659	65290675	H9_polyA+.3217	0	.	65289659	65290675	0	1	1016	0
chr1	65289669	65290313	K562.3009	0	.	65289669	65290313	0	1	644	0
chr1	65291403	65292589	H9_polyA+.3218	0	.	65291403	65292589	0	1	1186	0
chr1	65291591	65292588	K562.3011	0	.	65291591	65292588	0	1	997	0
chr1	65291613	65292574	melanoma_Garraway_short_term_cultures.4506	0	.	65291613	65292574	0	1	961	0
chr1	65291616	65292548	MIP101.4464	0	.	65291616	65292548	0	1	932	0
chr1	65291950	65292579	prostate_normal.4061	0	.	65291950	65292579	0	1	629	0
chr1	65292104	65292608	NEC_from_H9.5189	0	.	65292104	65292608	0	1	504	0
chr1	65292811	65294412	H9_polyA+.3219	0	.	65292811	65294412	0	1	1601	0
chr1	65292820	65294074	HepG2_Caltech_ENCODE.2439	0	.	65292820	65294074	0	1	1254	0
chr1	65292827	65294330	melanoma_Garraway_short_term_cultures.4507	0	.	65292827	65294330	0	1	1503	0
chr1	65293087	65295116	CD4_Plagnol_activated.4892	0	.	65293087	65295116	0	1	2029	0
chr1	65293180	65294351	T47D_Burge_Thompson.1980	0	.	65293180	65294351	0	1	1171	0
chr1	65293183	65295070	CD4_Plagnol_resting.4787	0	.	65293183	65295070	0	1	1887	0
chr1	65293265	65294933	MIP101.4465	0	.	65293265	65294933	0	1	1668	0
chr1	65293604	65295028	prostate_carcinoma.6525	0	.	65293604	65295028	0	1	1424	0
chr1	65293619	65295022	K562.3013	0	.	65293619	65295022	0	1	1403	0
chr1	65293621	65294278	liver_polyA+.8850	0	.	65293621	65294278	0	1	657	0
chr1	65293636	65294994	NEC_from_H9.5193	0	.	65293636	65294994	0	1	1358	0
chr1	65294231	65295111	B_cells_Cheung.11293	0	.	65294231	65295111	0	1	880	0
chr1	65294237	65296694	HepG2_Caltech_ENCODE.2440	0	.	65294237	65296694	0	1	2457	0
chr1	65294433	65295027	melanoma_Garraway_short_term_cultures.4508	0	.	65294433	65295027	0	1	594	0
chr1	65294494	65296693	H9_polyA+.3220	0	.	65294494	65296693	0	1	2199	0
chr1	65294536	65294997	CD4_Snyder.3847	0	.	65294536	65294997	0	1	461	0
chr1	65294549	65295116	HeLa_polyA+_Chen.2340	0	.	65294549	65295116	0	1	567	0
chr1	65296809	65305369	REMC_MyoepithelialBreast.6051	0	.	65296809	65305369	0	1	8560	0
chr1	65299598	65303638	REMC_BreastStem.3634	0	.	65299598	65303638	0	1	4040	0
chr1	65299876	65301124	CD4_Snyder.3850	0	.	65299876	65301124	0	1	1248	0
chr1	65300399	65301409	ovary_Raymond.14544	0	.	65300399	65301409	0	1	1010	0
chr1	65300414	65301007	brain_AmbionMAQC.3052	0	.	65300414	65301007	0	1	593	0
chr1	65300463	65301443	H9_polyA-_Chen.1039	0	.	65300463	65301443	0	1	980	0
chr1	65300690	65301081	liver_polyA+.8854	0	.	65300690	65301081	0	1	391	0
chr1	65303718	65305123	brain_AmbionMAQC.3053	0	.	65303718	65305123	0	1	1405	0
chr1	65303781	65313307	CD4_Snyder.3857	0	-	65303781	65313307	0	4	1244,26,713,20	0,1411,1974,9506
chr1	65304658	65305070	prostate_carcinoma.6527	0	.	65304658	65305070	0	1	412	0
chr1	65304699	65305075	BT474_Burge_Thompson.2216	0	.	65304699	65305075	0	1	376	0
chr1	65304722	65306454	CD4_Plagnol_resting.4790	0	.	65304722	65306454	0	1	1732	0
chr1	65304766	65305977	lymph_node_Burge.3597	0	-	65304766	65305977	0	2	307,103	0,1108
chr1	65304868	65305976	colon_Burge.2755	0	-	65304868	65305976	0	2	205,102	0,1006
chr1	65305028	65305692	CD4_Snyder.3858	0	.	65305028	65305692	0	1	664	0
chr1	65305347	65306589	CD4_Plagnol_activated.4895	0	.	65305347	65306589	0	1	1242	0
chr1	65305493	65305989	B_cells_Cheung.11296	0	.	65305493	65305989	0	1	496	0
chr1	65305648	65306207	HepG2_Caltech_ENCODE.2441	0	.	65305648	65306207	0	1	559	0
chr1	65305674	65306255	prostate_normal.4062	0	.	65305674	65306255	0	1	581	0
chr1	65306063	65306929	B_cells_Cheung.11297	0	.	65306063	65306929	0	1	866	0
chr1	65481616	65482837	REMC_MyoepithelialBreast.6089	0	.	65481616	65482837	0	1	1221	0
chr1	66623242	66628087	REMC_LuminalBreast.6712	0	.	66623242	66628087	0	1	4845	0
chr1	66631803	66632289	B_cells_Cheung.11450	0	.	66631803	66632289	0	1	486	0
chr1	66631882	66633264	REMC_LuminalBreast.6715	0	.	66631882	66633264	0	1	1382	0
chr1	66638443	66639089	B_cells_Cheung.11451	0	.	66638443	66639089	0	1	646	0
chr1	66681374	66683354	B_cells_Cheung.11457	0	.	66681374	66683354	0	1	1980	0
chr1	66681488	66683361	B_Cells_Pritchard.158753	0	.	66681488	66683361	0	1	1873	0
chr1	66725264	66728735	MIP101.4498	0	.	66725264	66728735	0	1	3471	0
chr1	67231460	67232640	MIP101.4548	0	.	67231460	67232640	0	1	1180	0
chr1	67297710	67298958	prostate_carcinoma.6619	0	.	67297710	67298958	0	1	1248	0
chr1	67761807	67764280	liver_polyA+.9085	0	.	67761807	67764280	0	1	2473	0
chr1	67774737	67775088	kidney_Gilad.5941	0	.	67774737	67775088	0	1	351	0
chr1	67775827	67776172	kidney_Gilad.5943	0	.	67775827	67776172	0	1	345	0
chr1	67929204	67931026	REMC_LuminalBreast.6756	0	.	67929204	67931026	0	1	1822	0
chr1	67929893	67930940	REMC_BreastStem.3297	0	.	67929893	67930940	0	1	1047	0
chr1	67930016	67931026	HepG2_Caltech_ENCODE.2470	0	.	67930016	67931026	0	1	1010	0
chr1	67934116	67934519	REMC_MyoepithelialBreast.6403	0	.	67934116	67934519	0	1	403	0
chr1	68087436	68088310	liver_polyA+.9120	0	.	68087436	68088310	0	1	874	0
chr1	68087749	68088148	H1_rRNA-depleted_UCSD_REMC.6170	0	.	68087749	68088148	0	1	399	0
chr1	68294787	68295999	REMC_MyoepithelialBreast.6270	0	.	68294787	68295999	0	1	1212	0
chr1	68314550	68316266	REMC_MyoepithelialBreast.6281	0	.	68314550	68316266	0	1	1716	0
chr1	68320175	68322939	REMC_MyoepithelialBreast.6284	0	.	68320175	68322939	0	1	2764	0
chr1	68327835	68328217	REMC_MyoepithelialBreast.6290	0	.	68327835	68328217	0	1	382	0
chr1	69126343	69126794	H1_polyA+.8086	0	.	69126343	69126794	0	1	451	0
chr1	69144757	69146476	H1_polyA+.8087	0	.	69144757	69146476	0	1	1719	0
chr1	69377261	69379594	B_cells_Cheung.11818	0	.	69377261	69379594	0	1	2333	0
chr1	69395526	69396226	B_cells_Cheung.11824	0	.	69395526	69396226	0	1	700	0
chr1	69408088	69409969	B_cells_Cheung.11832	0	.	69408088	69409969	0	1	1881	0
chr1	69442983	69446459	B_cells_Cheung.11696	0	.	69442983	69446459	0	1	3476	0
chr1	69484981	69485539	B_cells_Cheung.11722	0	.	69484981	69485539	0	1	558	0
chr1	69504508	69504828	B_cells_Cheung.11724	0	.	69504508	69504828	0	1	320	0
chr1	69519818	69521346	B_cells_Cheung.11735	0	.	69519818	69521346	0	1	1528	0
chr1	69544490	69544829	B_cells_Cheung.11743	0	.	69544490	69544829	0	1	339	0
chr1	69550342	69551028	B_cells_Cheung.11747	0	.	69550342	69551028	0	1	686	0
chr1	69553648	69554211	B_Cells_Pritchard.165237	0	.	69553648	69554211	0	1	563	0
chr1	69554497	69555194	B_cells_Cheung.11750	0	.	69554497	69555194	0	1	697	0
chr1	69578481	69579027	B_cells_Cheung.11758	0	.	69578481	69579027	0	1	546	0
chr1	69600179	69601917	B_cells_Cheung.11775	0	.	69600179	69601917	0	1	1738	0
chr1	69611437	69612989	B_cells_Cheung.11842	0	.	69611437	69612989	0	1	1552	0
chr1	69636667	69637414	B_cells_Cheung.11856	0	.	69636667	69637414	0	1	747	0
chr1	69639579	69641423	B_cells_Cheung.11858	0	.	69639579	69641423	0	1	1844	0
chr1	69641807	69642279	B_cells_Cheung.11859	0	.	69641807	69642279	0	1	472	0
chr1	69663532	69667803	B_cells_Cheung.11866	0	.	69663532	69667803	0	1	4271	0
chr1	69713064	69713396	B_cells_Cheung.11889	0	.	69713064	69713396	0	1	332	0
chr1	69726307	69727667	B_cells_Cheung.11892	0	.	69726307	69727667	0	1	1360	0
chr1	69772981	69774133	B_cells_Cheung.11915	0	.	69772981	69774133	0	1	1152	0
chr1	69800282	69801137	K562.3242	0	.	69800282	69801137	0	1	855	0
chr1	70375882	70377280	REMC_MyoepithelialBreast.6264	0	.	70375882	70377280	0	1	1398	0
chr1	70695500	70696169	REMC_MyoepithelialBreast.6305	0	.	70695500	70696169	0	1	669	0
chr1	70706299	70708852	REMC_MyoepithelialBreast.6306	0	.	70706299	70708852	0	1	2553	0
chr1	71290058	71297984	B_cells_Cheung.12029	0	.	71290058	71297984	0	1	7926	0
chr1	71295220	71298008	H1_polyA+.8337	0	.	71295220	71298008	0	1	2788	0
chr1	71296120	71297379	CD4_Snyder.4087	0	.	71296120	71297379	0	1	1259	0
chr1	71296158	71298013	REMC_BreastStem.3826	0	.	71296158	71298013	0	1	1855	0
chr1	71296830	71297952	K562.3273	0	.	71296830	71297952	0	1	1122	0
chr1	71296854	71297986	melanoma_Garraway_short_term_cultures.4697	0	.	71296854	71297986	0	1	1132	0
chr1	71296876	71297995	HepG2_Caltech_ENCODE.2510	0	.	71296876	71297995	0	1	1119	0
chr1	71296885	71297766	prostate_normal.4221	0	.	71296885	71297766	0	1	881	0
chr1	71296972	71297792	CD4_Plagnol_activated.4989	0	.	71296972	71297792	0	1	820	0
chr1	71297541	71297927	HeLa_polyA+_Chen.2436	0	.	71297541	71297927	0	1	386	0
chr1	71353618	71355398	B_cells_Cheung.12243	0	.	71353618	71355398	0	1	1780	0
chr1	71354668	71355431	B_Cells_Pritchard.168007	0	.	71354668	71355431	0	1	763	0
chr1	71356420	71356905	B_Cells_Pritchard.168013	0	.	71356420	71356905	0	1	485	0
chr1	71356522	71356982	B_cells_Cheung.12244	0	.	71356522	71356982	0	1	460	0
chr1	71371222	71372586	B_cells_Cheung.12251	0	.	71371222	71372586	0	1	1364	0
chr1	71399304	71399905	B_cells_Cheung.12256	0	.	71399304	71399905	0	1	601	0
chr1	71476521	71478128	REMC_LuminalBreast.6852	0	.	71476521	71478128	0	1	1607	0
chr1	71477233	71478186	B_Cells_Pritchard.168349	0	.	71477233	71478186	0	1	953	0
chr1	71477246	71478205	MIP101.4748	0	.	71477246	71478205	0	1	959	0
chr1	71477341	71478178	prostate_carcinoma.6782	0	.	71477341	71478178	0	1	837	0
chr1	71477548	71478525	H1_polyA+.8344	0	.	71477548	71478525	0	1	977	0
chr1	71595862	71597139	B_Cells_Pritchard.168697	0	.	71595862	71597139	0	1	1277	0
chr1	71634214	71636814	HIT000019658	0	-	71634214	71636814	0	1	2600	0
chr1	71635432	71636933	brain_AmbionMAQC.3167	0	.	71635432	71636933	0	1	1501	0
chr1	71637693	71639118	brain_AmbionMAQC.3170	0	.	71637693	71639118	0	1	1425	0
chr1	72874702	72875197	H1_rRNA-depleted_UCSD_REMC.6272	0	.	72874702	72875197	0	1	495	0
chr1	73013541	73029611	HIT000097717	0	+	73013541	73029611	0	6	274,85,186,215,355,276	0,3002,4836,8398,11356,15794
chr1	73013541	73029551	ENST00000418078	0	+	73013541	73029551	0	6	274,85,187,214,355,216	0,3002,4836,8399,11356,15794
chr1	73022398	73022769	H1_polyA+.8375	0	.	73022398	73022769	0	1	371	0
chr1	73065642	73066062	H1_rRNA-depleted_UCSD_REMC.6300	0	.	73065642	73066062	0	1	420	0
chr1	75868486	75869394	K562.3318	0	.	75868486	75869394	0	1	908	0
chr1	75876866	75879258	H1_polyA+.8435	0	.	75876866	75879258	0	1	2392	0
chr1	75878338	75878853	H9_polyA+.3389	0	.	75878338	75878853	0	1	515	0
chr1	76873308	76877911	H1_polyA+.8584	0	.	76873308	76877911	0	1	4603	0
chr1	76996395	77017540	Rinn_00000550	0	-	76996395	77017540	0	3	46,126,279	0,156,20866
chr1	76996396	77017540	ENST00000427806	0	-	76996396	77017540	0	3	45,125,278	0,156,20866
chr1	77305952	77306485	H1_polyA+.8503	0	.	77305952	77306485	0	1	533	0
chr1	77306192	77316755	ENST00000454305	0	+	77306192	77316755	0	4	82,164,108,143	0,164,816,10420
chr1	77306911	77307877	REMC_BreastStem.3407	0	.	77306911	77307877	0	1	966	0
chr1	77315236	77316949	H1_polyA+.8507	0	.	77315236	77316949	0	1	1713	0
chr1	77316237	77317596	REMC_MyoepithelialBreast.6391	0	.	77316237	77317596	0	1	1359	0
chr1	77459068	77462701	H1_polyA+.8613	0	.	77459068	77462701	0	1	3633	0
chr1	77460211	77460598	B_cells_Cheung.12367	0	.	77460211	77460598	0	1	387	0
chr1	77460487	77461058	H9_polyA+.3417	0	.	77460487	77461058	0	1	571	0
chr1	77485559	77486365	H1_polyA+.8616	0	.	77485559	77486365	0	1	806	0
chr1	78118182	78124058	REMC_MyoepithelialBreast.7099	0	.	78118182	78124058	0	1	5876	0
chr1	78120159	78120928	B_cells_Cheung.12476	0	.	78120159	78120928	0	1	769	0
chr1	78120168	78122037	H1_polyA+.8610	0	.	78120168	78122037	0	1	1869	0
chr1	78387097	78387443	HepG2_Caltech_ENCODE.2633	0	.	78387097	78387443	0	1	346	0
chr1	78414647	78415170	liver_polyA+.9618	0	.	78414647	78415170	0	1	523	0
chr1	78450033	78450573	B_Cells_Pritchard.182141	0	.	78450033	78450573	0	1	540	0
chr1	78467870	78532162	ENST00000436742	0	+	78467870	78532162	0	6	131,827,384,152,199,300	0,20585,21895,62881,63480,63992
chr1	78467870	78532162	HIT000016624	0	+	78467870	78532162	0	6	131,827,384,152,199,300	0,20585,21895,62881,63480,63992
chr1	78489681	78490045	liver_polyA+.9627	0	.	78489681	78490045	0	1	364	0
chr1	78501707	78502024	liver_polyA+.9635	0	.	78501707	78502024	0	1	317	0
chr1	78905249	78907351	B_cells_Cheung.12650	0	.	78905249	78907351	0	1	2102	0
chr1	78910059	78913510	B_Cells_Pritchard.182953	0	.	78910059	78913510	0	1	3451	0
chr1	78910297	78913355	B_cells_Cheung.12652	0	.	78910297	78913355	0	1	3058	0
chr1	78911001	78911579	prostate_carcinoma.7041	0	.	78911001	78911579	0	1	578	0
chr1	78966163	78966478	B_cells_Cheung.12654	0	.	78966163	78966478	0	1	315	0
chr1	79700607	79732091	H1_polyA+.8650	0	-	79700607	79732091	0	2	462,258	0,31226
chr1	79700725	79701064	NEC_from_H9.5593	0	.	79700725	79701064	0	1	339	0
chr1	79716417	79717803	H9_polyA+.3501	0	.	79716417	79717803	0	1	1386	0
chr1	79728883	79731501	H9_polyA+.3506	0	-	79728883	79731501	0	2	252,547	0,2071
chr1	79730809	79731550	H1_polyA+.8651	0	.	79730809	79731550	0	1	741	0
chr1	79731766	79732076	H9_polyA+.3507	0	.	79731766	79732076	0	1	310	0
chr1	79731771	79732091	H1_polyA+.8652	0	.	79731771	79732091	0	1	320	0
chr1	81408050	81409227	H1_polyA+.8720	0	.	81408050	81409227	0	1	1177	0
chr1	81411938	81413595	H1_polyA+.8721	0	.	81411938	81413595	0	1	1657	0
chr1	81483949	81485363	H1_polyA+.8765	0	.	81483949	81485363	0	1	1414	0
chr1	81513879	81516617	H1_polyA+.8727	0	.	81513879	81516617	0	1	2738	0
chr1	81528757	81534577	H1_polyA+.8730	0	.	81528757	81534577	0	1	5820	0
chr1	81541332	81541653	H1_rRNA-depleted_UCSD_REMC.6520	0	.	81541332	81541653	0	1	321	0
chr1	82410575	82411142	B_cells_Cheung.12715	0	.	82410575	82411142	0	1	567	0
chr1	82450574	82454083	B_Cells_Pritchard.189627	0	.	82450574	82454083	0	1	3509	0
chr1	82450685	82454045	B_cells_Cheung.12716	0	.	82450685	82454045	0	1	3360	0
chr1	82462977	82463371	B_cells_Cheung.12719	0	.	82462977	82463371	0	1	394	0
chr1	82476939	82478959	B_cells_Cheung.12732	0	.	82476939	82478959	0	1	2020	0
chr1	82477970	82478992	B_Cells_Pritchard.189721	0	.	82477970	82478992	0	1	1022	0
chr1	82713439	82714276	H1_polyA+.8795	0	.	82713439	82714276	0	1	837	0
chr1	82722490	82724490	H1_polyA+.8799	0	-	82722490	82724490	0	3	202,426,56	0,1206,1944
chr1	82764523	82766185	H1_polyA+.8802	0	.	82764523	82766185	0	1	1662	0
chr1	82771710	82774626	H1_polyA+.8807	0	.	82771710	82774626	0	1	2916	0
chr1	82786030	82788905	H1_polyA+.8809	0	.	82786030	82788905	0	1	2875	0
chr1	82942231	82944080	H1_polyA+.8829	0	.	82942231	82944080	0	1	1849	0
chr1	82959368	82959680	H1_rRNA-depleted_UCSD_REMC.6557	0	.	82959368	82959680	0	1	312	0
chr1	82974739	82975140	H1_rRNA-depleted_UCSD_REMC.6558	0	.	82974739	82975140	0	1	401	0
chr1	82974753	82976999	H1_polyA+.8845	0	.	82974753	82976999	0	1	2246	0
chr1	82997191	82997606	H1_rRNA-depleted_UCSD_REMC.6569	0	.	82997191	82997606	0	1	415	0
chr1	83035030	83035778	H1_polyA+.8871	0	.	83035030	83035778	0	1	748	0
chr1	83035445	83069735	pHIT000001682	0	-	83035445	83069735	0	3	351,45,9	0,33914,34281
chr1	83240102	83246768	H1_polyA+.8891	0	.	83240102	83246768	0	1	6666	0
chr1	83241125	83243270	prostate_carcinoma.7080	0	.	83241125	83243270	0	1	2145	0
chr1	83241126	83243007	REMC_LuminalBreast.7068	0	.	83241126	83243007	0	1	1881	0
chr1	83241233	83242961	prostate_normal.4408	0	.	83241233	83242961	0	1	1728	0
chr1	83241705	83242764	melanoma_Garraway_short_term_cultures.4860	0	.	83241705	83242764	0	1	1059	0
chr1	83304351	83306210	H1_polyA+.8897	0	.	83304351	83306210	0	1	1859	0
chr1	83306364	83306735	H1_rRNA-depleted_UCSD_REMC.6600	0	.	83306364	83306735	0	1	371	0
chr1	83825634	83829150	REMC_LuminalBreast.7082	0	.	83825634	83829150	0	1	3516	0
chr1	83899780	83900558	prostate_carcinoma.7084	0	.	83899780	83900558	0	1	778	0
chr1	83905451	83906249	prostate_carcinoma.7085	0	.	83905451	83906249	0	1	798	0
chr1	83978304	83978613	liver_polyA+.9752	0	.	83978304	83978613	0	1	309	0
chr1	84010334	84011311	prostate_carcinoma.7091	0	.	84010334	84011311	0	1	977	0
chr1	84019848	84020219	kidney_Gilad.6376	0	.	84019848	84020219	0	1	371	0
chr1	84019848	84020291	liver_polyA+.9759	0	.	84019848	84020291	0	1	443	0
chr1	84029278	84031521	prostate_carcinoma.7095	0	.	84029278	84031521	0	1	2243	0
chr1	84029398	84031196	REMC_LuminalBreast.7088	0	.	84029398	84031196	0	1	1798	0
chr1	84038350	84039192	liver_polyA+.9772	0	.	84038350	84039192	0	1	842	0
chr1	84069527	84070508	REMC_LuminalBreast.7094	0	.	84069527	84070508	0	1	981	0
chr1	84075573	84077377	prostate_carcinoma.7106	0	.	84075573	84077377	0	1	1804	0
chr1	84098198	84099314	REMC_LuminalBreast.7101	0	.	84098198	84099314	0	1	1116	0
chr1	84098748	84099143	A549_Myers.4778	0	.	84098748	84099143	0	1	395	0
chr1	84099086	84099451	B_cells_Cheung.12750	0	.	84099086	84099451	0	1	365	0
chr1	84099106	84099413	liver_polyA+.9795	0	.	84099106	84099413	0	1	307	0
chr1	84302961	84303626	BT20_Thompson.1629	0	.	84302961	84303626	0	1	665	0
chr1	84653322	84708010	pHIT000071971	0	-	84653322	84708010	0	7	33,52,134,165,139,56,69	0,2042,4984,12676,39621,41167,54619
chr1	84658182	84708010	pHIT000001690	0	-	84658182	84708010	0	5	258,165,139,56,69	0,7816,34761,36307,49759
chr1	84814249	84815937	B_cells_Cheung.12874	0	.	84814249	84815937	0	1	1688	0
chr1	84814369	84815501	H1_polyA+.8937	0	.	84814369	84815501	0	1	1132	0
chr1	84824044	84825296	B_cells_Cheung.12885	0	.	84824044	84825296	0	1	1252	0
chr1	84825353	84826002	B_cells_Cheung.12886	0	.	84825353	84826002	0	1	649	0
chr1	84828315	84829769	REMC_BreastStem.3493	0	.	84828315	84829769	0	1	1454	0
chr1	84831302	84832471	REMC_BreastStem.3494	0	.	84831302	84832471	0	1	1169	0
chr1	84858777	84859321	prostate_carcinoma.7184	0	.	84858777	84859321	0	1	544	0
chr1	84858806	84859290	melanoma_Garraway_short_term_cultures.4902	0	.	84858806	84859290	0	1	484	0
chr1	84858845	84859306	B_cells_Cheung.12897	0	.	84858845	84859306	0	1	461	0
chr1	84858865	84859274	B_Cells_Pritchard.193671	0	.	84858865	84859274	0	1	409	0
chr1	84858986	84859503	A549_Myers.4808	0	.	84858986	84859503	0	1	517	0
chr1	85003289	85005341	H1_polyA+.8953	0	.	85003289	85005341	0	1	2052	0
chr1	85003335	85005345	prostate_carcinoma.7188	0	.	85003335	85005345	0	1	2010	0
chr1	85005956	85008103	H1_polyA+.8954	0	.	85005956	85008103	0	1	2147	0
chr1	85008296	85008687	prostate_carcinoma.7190	0	.	85008296	85008687	0	1	391	0
chr1	85010068	85013663	prostate_carcinoma.7192	0	.	85010068	85013663	0	1	3595	0
chr1	85023176	85024007	H1_polyA+.8962	0	.	85023176	85024007	0	1	831	0
chr1	85027045	85029091	H1_polyA+.8964	0	.	85027045	85029091	0	1	2046	0
chr1	85382258	85384391	melanoma_Garraway_short_term_cultures.4926	0	.	85382258	85384391	0	1	2133	0
chr1	85382373	85384251	B_Cells_Pritchard.195145	0	.	85382373	85384251	0	1	1878	0
chr1	85383158	85384126	B_cells_Cheung.12987	0	.	85383158	85384126	0	1	968	0
chr1	85386345	85386974	B_Cells_Pritchard.195151	0	.	85386345	85386974	0	1	629	0
chr1	85390826	85394560	MCF7_Burge_Thompson.2165	0	.	85390826	85394560	0	1	3734	0
chr1	85392709	85394650	REMC_MyoepithelialBreast.6762	0	.	85392709	85394650	0	1	1941	0
chr1	85392713	85394029	B_cells_Cheung.12990	0	.	85392713	85394029	0	1	1316	0
chr1	85392714	85393282	K562.3459	0	.	85392714	85393282	0	1	568	0
chr1	85392716	85394031	ZR751_Thompson.1841	0	.	85392716	85394031	0	1	1315	0
chr1	85392726	85394093	prostate_carcinoma.7232	0	.	85392726	85394093	0	1	1367	0
chr1	85392735	85393279	BT474_Burge_Thompson.2418	0	.	85392735	85393279	0	1	544	0
chr1	85392882	85393930	B_Cells_Pritchard.195171	0	.	85392882	85393930	0	1	1048	0
chr1	85393243	85393977	prostate_normal.4494	0	.	85393243	85393977	0	1	734	0
chr1	85393345	85394468	K562.3457	0	.	85393345	85394468	0	1	1123	0
chr1	85393352	85394028	H9_polyA+.3601	0	.	85393352	85394028	0	1	676	0
chr1	85470434	85472156	REMC_MyoepithelialBreast.6764	0	.	85470434	85472156	0	1	1722	0
chr1	85475416	85483354	pHIT000070492	0	+	85475416	85483354	0	3	47,62,242	0,3486,7696
chr1	85499363	85501455	H1_polyA+.9005	0	.	85499363	85501455	0	1	2092	0
chr1	85499372	85500602	melanoma_Garraway_short_term_cultures.4944	0	.	85499372	85500602	0	1	1230	0
chr1	85499426	85500839	CD4_Plagnol_activated.5196	0	.	85499426	85500839	0	1	1413	0
chr1	85499427	85500125	CD4_Plagnol_resting.5109	0	.	85499427	85500125	0	1	698	0
chr1	85499458	85500724	REMC_BreastStem.3508	0	.	85499458	85500724	0	1	1266	0
chr1	85516908	85517930	B_cells_Cheung.13029	0	.	85516908	85517930	0	1	1022	0
chr1	85516999	85523653	B_Cells_Pritchard.195521	0	-	85516999	85523653	0	4	447,398,220,1838	0,500,1144,4816
chr1	85518537	85521215	B_Cells_Pritchard.195523	0	-	85518537	85521215	0	4	973,502,220,599	0,1038,1781,2079
chr1	85521505	85523653	B_Cells_Pritchard.195519	0	+	85521505	85523653	0	3	1285,565,193	0,1337,1955
chr1	85521521	85523649	B_cells_Cheung.13033	0	.	85521521	85523649	0	1	2128	0
chr1	85521934	85525848	REMC_BreastStem.3519	0	.	85521934	85525848	0	1	3914	0
chr1	85522160	85522943	H1_polyA+.9020	0	.	85522160	85522943	0	1	783	0
chr1	85530150	85530685	B_cells_Cheung.13041	0	.	85530150	85530685	0	1	535	0
chr1	85531568	85534688	REMC_LuminalBreast.7317	0	.	85531568	85534688	0	1	3120	0
chr1	85533165	85534515	REMC_MyoepithelialBreast.10633	0	.	85533165	85534515	0	1	1350	0
chr1	85533179	85534687	REMC_BreastStem.3523	0	.	85533179	85534687	0	1	1508	0
chr1	85533193	85534626	B_cells_Cheung.13046	0	.	85533193	85534626	0	1	1433	0
chr1	85533325	85534566	B_Cells_Pritchard.195573	0	.	85533325	85534566	0	1	1241	0
chr1	85534848	85540135	REMC_BreastStem.3524	0	.	85534848	85540135	0	1	5287	0
chr1	85540765	85541550	REMC_MyoepithelialBreast.10635	0	.	85540765	85541550	0	1	785	0
chr1	85543911	85545809	REMC_MyoepithelialBreast.10638	0	.	85543911	85545809	0	1	1898	0
chr1	85544507	85546072	REMC_BreastStem.3511	0	.	85544507	85546072	0	1	1565	0
chr1	85546310	85546993	REMC_BreastStem.3512	0	.	85546310	85546993	0	1	683	0
chr1	85551410	85555692	REMC_BreastStem.3515	0	.	85551410	85555692	0	1	4282	0
chr1	85553021	85554472	B_cells_Cheung.13056	0	.	85553021	85554472	0	1	1451	0
chr1	85841046	85864853	pHIT000001705	0	-	85841046	85864853	0	2	210,102	0,23705
chr1	85844128	85848532	REMC_MyoepithelialBreast.10731	0	.	85844128	85848532	0	1	4404	0
chr1	85845438	85847105	REMC_BreastStem.4234	0	.	85845438	85847105	0	1	1667	0
chr1	85845863	85846733	REMC_LuminalBreast.7273	0	.	85845863	85846733	0	1	870	0
chr1	85846258	85846851	B_Cells_Pritchard.196601	0	.	85846258	85846851	0	1	593	0
chr1	85848695	85852132	REMC_MyoepithelialBreast.10732	0	.	85848695	85852132	0	1	3437	0
chr1	85850141	85850637	B_Cells_Pritchard.196619	0	.	85850141	85850637	0	1	496	0
chr1	85850240	85851282	REMC_BreastStem.4237	0	.	85850240	85851282	0	1	1042	0
chr1	85854301	85854616	B_Cells_Pritchard.196635	0	.	85854301	85854616	0	1	315	0
chr1	85860934	85862017	REMC_MyoepithelialBreast.6782	0	.	85860934	85862017	0	1	1083	0
chr1	85863127	85880711	REMC_MyoepithelialBreast.6783	0	.	85863127	85880711	0	1	17584	0
chr1	85866792	85868919	H1_polyA+.9023	0	.	85866792	85868919	0	1	2127	0
chr1	85867100	85868021	prostate_carcinoma.7351	0	.	85867100	85868021	0	1	921	0
chr1	85867629	85868759	REMC_LuminalBreast.7278	0	.	85867629	85868759	0	1	1130	0
chr1	85867688	85868268	B_cells_Cheung.13131	0	.	85867688	85868268	0	1	580	0
chr1	85870649	85871728	H1_polyA+.9025	0	.	85870649	85871728	0	1	1079	0
chr1	85875833	85877023	REMC_LuminalBreast.7280	0	.	85875833	85877023	0	1	1190	0
chr1	86556617	86561807	REMC_LuminalBreast.7286	0	.	86556617	86561807	0	1	5190	0
chr1	86935720	86937139	H1_polyA+.9075	0	.	86935720	86937139	0	1	1419	0
chr1	86935744	86936458	B_cells_Cheung.13293	0	.	86935744	86936458	0	1	714	0
chr1	86936427	86937155	REMC_LuminalBreast.7310	0	.	86936427	86937155	0	1	728	0
chr1	86936557	86936911	REMC_MyoepithelialBreast.6790	0	.	86936557	86936911	0	1	354	0
chr1	86940091	86941264	B_Cells_Pritchard.199075	0	.	86940091	86941264	0	1	1173	0
chr1	86941758	86942733	HIT000093521	0	-	86941758	86942733	0	1	975	0
chr1	87631160	87633718	REMC_MyoepithelialBreast.6843	0	.	87631160	87633718	0	1	2558	0
chr1	87632212	87633330	REMC_LuminalBreast.7381	0	.	87632212	87633330	0	1	1118	0
chr1	88038841	88041732	HepG2_Caltech_ENCODE.2744	0	.	88038841	88041732	0	1	2891	0
chr1	88038841	88041732	HepG2_Caltech_ENCODE.2743	0	-	88038841	88041732	0	2	1576,598	0,2293
chr1	88039557	88040496	B_Cells_Pritchard.201711	0	.	88039557	88040496	0	1	939	0
chr1	88040636	88041287	B_Cells_Pritchard.201713	0	.	88040636	88041287	0	1	651	0
chr1	88695580	88695923	B_Cells_Pritchard.202961	0	.	88695580	88695923	0	1	343	0
chr1	88700854	88701299	A549_Myers.4906	0	.	88700854	88701299	0	1	445	0
chr1	88703090	88703865	prostate_carcinoma.7422	0	.	88703090	88703865	0	1	775	0
chr1	88703193	88703626	H1_rRNA-depleted_UCSD_REMC.6857	0	.	88703193	88703626	0	1	433	0
chr1	88917084	88918944	K562.3584	0	.	88917084	88918944	0	1	1860	0
chr1	88917394	88919000	B_cells_Cheung.13350	0	.	88917394	88919000	0	1	1606	0
chr1	89132875	89134285	MIP101.5197	0	.	89132875	89134285	0	1	1410	0
chr1	89133746	89134678	prostate_carcinoma.7453	0	.	89133746	89134678	0	1	932	0
chr1	89133855	89134545	HepG2_Caltech_ENCODE.2756	0	.	89133855	89134545	0	1	690	0
chr1	89150601	89155171	REMC_LuminalBreast.8956	0	.	89150601	89155171	0	1	4570	0
chr1	89152716	89158255	B_Cells_Pritchard.203937	0	.	89152716	89158255	0	1	5539	0
chr1	89153137	89155550	REMC_MyoepithelialBreast.6860	0	.	89153137	89155550	0	1	2413	0
chr1	89153142	89158188	B_cells_Cheung.13511	0	.	89153142	89158188	0	1	5046	0
chr1	89153875	89154902	REMC_BreastStem.3767	0	.	89153875	89154902	0	1	1027	0
chr1	89156250	89158888	REMC_LuminalBreast.8957	0	.	89156250	89158888	0	1	2638	0
chr1	89156508	89157121	REMC_BreastStem.3768	0	.	89156508	89157121	0	1	613	0
chr1	89156623	89157422	MIP101.5198	0	.	89156623	89157422	0	1	799	0
chr1	89233013	89235936	B_cells_Cheung.13515	0	.	89233013	89235936	0	1	2923	0
chr1	89233021	89235613	REMC_BreastStem.3772	0	.	89233021	89235613	0	1	2592	0
chr1	89236072	89240773	REMC_MyoepithelialBreast.6877	0	.	89236072	89240773	0	1	4701	0
chr1	89237385	89240452	B_Cells_Pritchard.204435	0	-	89237385	89240452	0	1	3067	0
chr1	89237607	89239091	CD4_Plagnol_activated.5286	0	.	89237607	89239091	0	1	1484	0
chr1	89237617	89238190	CD4_Plagnol_resting.5203	0	.	89237617	89238190	0	1	573	0
chr1	89237948	89239883	REMC_BreastStem.3774	0	.	89237948	89239883	0	1	1935	0
chr1	89665747	89666784	H1_polyA+.9133	0	.	89665747	89666784	0	1	1037	0
chr1	89675153	89675730	MIP101.5240	0	.	89675153	89675730	0	1	577	0
chr1	89675395	89676103	REMC_LuminalBreast.7397	0	.	89675395	89676103	0	1	708	0
chr1	89698508	89699603	MIP101.5246	0	.	89698508	89699603	0	1	1095	0
chr1	89709191	89711267	H1_polyA+.9138	0	.	89709191	89711267	0	1	2076	0
chr1	89709277	89711249	MIP101.5249	0	.	89709277	89711249	0	1	1972	0
chr1	89718405	89719077	H1_polyA+.9139	0	.	89718405	89719077	0	1	672	0
chr1	89727089	89728029	MIP101.5318	0	.	89727089	89728029	0	1	940	0
chr1	89749411	89752766	H1_polyA+.9158	0	.	89749411	89752766	0	1	3355	0
chr1	89750452	89751793	MIP101.5320	0	.	89750452	89751793	0	1	1341	0
chr1	89750763	89751199	B_cells_Cheung.13616	0	.	89750763	89751199	0	1	436	0
chr1	89751302	89752238	B_cells_Cheung.13617	0	.	89751302	89752238	0	1	936	0
chr1	89752565	89754559	MIP101.5321	0	.	89752565	89754559	0	1	1994	0
chr1	89754072	89755458	H1_polyA+.9160	0	.	89754072	89755458	0	1	1386	0
chr1	89846842	89847743	B_cells_Cheung.13653	0	.	89846842	89847743	0	1	901	0
chr1	89847253	89847868	CD4_Snyder.4736	0	.	89847253	89847868	0	1	615	0
chr1	89848125	89849303	B_cells_Cheung.13654	0	.	89848125	89849303	0	1	1178	0
chr1	89848149	89848952	CD4_Snyder.4738	0	.	89848149	89848952	0	1	803	0
chr1	89848252	89849055	B_Cells_Pritchard.205787	0	.	89848252	89849055	0	1	803	0
chr1	89851590	89853035	B_cells_Cheung.13676	0	.	89851590	89853035	0	1	1445	0
chr1	89852008	89853018	prostate_carcinoma.7502	0	.	89852008	89853018	0	1	1010	0
chr1	89862995	89871041	NR_033981	0	-	89862995	89871041	0	3	357,194,238	0,7167,7808
chr1	89862996	89871041	ENST00000415584	0	-	89862996	89871041	0	3	356,194,238	0,7166,7807
chr1	89864133	89871095	Rinn_00001573	0	-	89864133	89871095	0	3	840,191,293	0,6032,6669
chr1	89868235	89871080	prostate_carcinoma.7506	0	-	89868235	89871080	0	2	2121,277	0,2568
chr1	89869912	89871098	prostate_normal.4657	0	-	89869912	89871098	0	2	444,295	0,891
chr1	89869990	89871095	Rinn_00001574	0	-	89869990	89871095	0	2	366,293	0,812
chr1	90177026	90178421	melanoma_Garraway_short_term_cultures.5100	0	.	90177026	90178421	0	1	1395	0
chr1	90187672	90189116	REMC_LuminalBreast.7578	0	.	90187672	90189116	0	1	1444	0
chr1	90189284	90190236	H1_polyA+.9419	0	.	90189284	90190236	0	1	952	0
chr1	90189480	90190982	REMC_LuminalBreast.7579	0	.	90189480	90190982	0	1	1502	0
chr1	90226794	90229728	HepG2_Caltech_ENCODE.2799	0	.	90226794	90229728	0	1	2934	0
chr1	90227273	90228275	B_Cells_Pritchard.207103	0	.	90227273	90228275	0	1	1002	0
chr1	90270146	90270850	H1_rRNA-depleted_UCSD_REMC.6963	0	.	90270146	90270850	0	1	704	0
chr1	90276580	90282275	REMC_LuminalBreast.7542	0	.	90276580	90282275	0	1	5695	0
chr1	90278312	90280004	REMC_BreastStem.3749	0	.	90278312	90280004	0	1	1692	0
chr1	90279559	90282255	REMC_MyoepithelialBreast.7092	0	.	90279559	90282255	0	1	2696	0
chr1	90282626	90284998	REMC_LuminalBreast.7543	0	.	90282626	90284998	0	1	2372	0
chr1	90282777	90285456	REMC_MyoepithelialBreast.7093	0	.	90282777	90285456	0	1	2679	0
chr1	90286757	90288125	REMC_LuminalBreast.7544	0	.	90286757	90288125	0	1	1368	0
chr1	90460411	90462090	H1_polyA+.9251	0	.	90460411	90462090	0	1	1679	0
chr1	90471270	90472000	H1_polyA+.9253	0	.	90471270	90472000	0	1	730	0
chr1	90524912	90525242	MIP101.5347	0	.	90524912	90525242	0	1	330	0
chr1	90527130	90531292	H1_polyA+.9266	0	.	90527130	90531292	0	1	4162	0
chr1	90528005	90528337	H1_rRNA-depleted_UCSD_REMC.6997	0	.	90528005	90528337	0	1	332	0
chr1	90531401	90537370	H1_polyA+.9267	0	.	90531401	90537370	0	1	5969	0
chr1	90533281	90533919	H9_polyA+.3735	0	.	90533281	90533919	0	1	638	0
chr1	90733196	90733712	B_cells_Cheung.13821	0	.	90733196	90733712	0	1	516	0
chr1	90957584	90958043	B_Cells_Pritchard.208511	0	.	90957584	90958043	0	1	459	0
chr1	90957733	90958084	brain_AmbionMAQC.3443	0	.	90957733	90958084	0	1	351	0
chr1	90962516	90962892	brain_AmbionMAQC.3441	0	.	90962516	90962892	0	1	376	0
chr1	90963044	90963777	brain_AmbionMAQC.3442	0	.	90963044	90963777	0	1	733	0
chr1	91029474	91030983	prostate_carcinoma.7541	0	.	91029474	91030983	0	1	1509	0
chr1	91062181	91074330	testes_Burge.4277	0	+	91062181	91074330	0	2	72,404	0,11745
chr1	91067690	91074306	Rinn_00000088	0	-	91067690	91074306	0	2	2651,337	0,6279
chr1	91067691	91074306	ENST00000455680	0	-	91067691	91074306	0	2	2650,336	0,6279
chr1	91068170	91074311	HIT000094417	0	-	91068170	91074311	0	2	2171,341	0,5800
chr1	91069894	91089873	A549_Myers.4988	0	-	91069894	91089873	0	2	299,188	0,19791
chr1	91070012	91089795	Rinn_00000563	0	-	91070012	91089795	0	3	329,217,169	0,5681,19614
chr1	91071650	91073227	melanoma_Garraway_short_term_cultures.5117	0	.	91071650	91073227	0	1	1577	0
chr1	91072129	91073781	REMC_MyoepithelialBreast.7112	0	.	91072129	91073781	0	1	1652	0
chr1	91072139	91073319	prostate_carcinoma.7546	0	.	91072139	91073319	0	1	1180	0
chr1	91075418	91089905	Rinn_00001582	0	-	91075418	91089905	0	2	492,279	0,14208
chr1	91081838	91084993	REMC_MyoepithelialBreast.7114	0	.	91081838	91084993	0	1	3155	0
chr1	91083506	91084725	melanoma_Garraway_short_term_cultures.5124	0	.	91083506	91084725	0	1	1219	0
chr1	91083749	91086071	REMC_LuminalBreast.7554	0	.	91083749	91086071	0	1	2322	0
chr1	91088034	91089256	K562.3650	0	.	91088034	91089256	0	1	1222	0
chr1	91089246	91092881	Rinn_00001025	0	+	91089246	91092881	0	2	315,510	0,3125
chr1	91089385	91089873	A549_Myers.4990	0	.	91089385	91089873	0	1	488	0
chr1	91089938	91092950	REMC_LuminalBreast.7556	0	.	91089938	91092950	0	1	3012	0
chr1	91093178	91101605	REMC_LuminalBreast.7557	0	.	91093178	91101605	0	1	8427	0
chr1	91095378	91096927	REMC_MyoepithelialBreast.7122	0	.	91095378	91096927	0	1	1549	0
chr1	91095595	91096690	melanoma_Garraway_short_term_cultures.5127	0	.	91095595	91096690	0	1	1095	0
chr1	91099130	91100476	REMC_BreastStem.3754	0	.	91099130	91100476	0	1	1346	0
chr1	91104237	91111702	REMC_MyoepithelialBreast.8384	0	.	91104237	91111702	0	1	7465	0
chr1	91104237	91114052	REMC_MyoepithelialBreast.8386	0	+	91104237	91114052	0	2	7241,387	0,9428
chr1	91105483	91114085	REMC_LuminalBreast.7560	0	.	91105483	91114085	0	1	8602	0
chr1	91105686	91111701	REMC_BreastStem.3757	0	.	91105686	91111701	0	1	6015	0
chr1	91111752	91114067	REMC_MyoepithelialBreast.8385	0	.	91111752	91114067	0	1	2315	0
chr1	91111763	91114118	REMC_BreastStem.3756	0	.	91111763	91114118	0	1	2355	0
chr1	91114920	91122285	REMC_BreastStem.3760	0	.	91114920	91122285	0	1	7365	0
chr1	91116166	91116699	B_cells_Cheung.13848	0	.	91116166	91116699	0	1	533	0
chr1	91129788	91130316	REMC_LuminalBreast.8006	0	.	91129788	91130316	0	1	528	0
chr1	91131973	91133049	B_cells_Cheung.13859	0	.	91131973	91133049	0	1	1076	0
chr1	91132088	91143167	REMC_MyoepithelialBreast.8388	0	.	91132088	91143167	0	1	11079	0
chr1	91132123	91141371	H1_polyA+.9456	0	.	91132123	91141371	0	1	9248	0
chr1	91132157	91134901	REMC_BreastStem.3960	0	.	91132157	91134901	0	1	2744	0
chr1	91133045	91146777	khalil_67	0	.	91133045	91146777	0	4	409,363,127,282	0,10353,10974,13450
chr1	91133131	91133630	B_cells_Cheung.13860	0	.	91133131	91133630	0	1	499	0
chr1	91133151	91133849	melanoma_Garraway_short_term_cultures.5140	0	.	91133151	91133849	0	1	698	0
chr1	91133713	91135529	B_cells_Cheung.13862	0	.	91133713	91135529	0	1	1816	0
chr1	91133760	91136413	B_Cells_Pritchard.208963	0	.	91133760	91136413	0	1	2653	0
chr1	91133920	91134665	CD4_Snyder.4900	0	.	91133920	91134665	0	1	745	0
chr1	91134155	91135190	CD4_Plagnol_activated.5425	0	.	91134155	91135190	0	1	1035	0
chr1	91144372	91147118	REMC_BreastStem.3964	0	.	91144372	91147118	0	1	2746	0
chr1	91376381	91378074	H1_polyA+.9281	0	.	91376381	91378074	0	1	1693	0
chr1	91770344	91770804	B_Cells_Pritchard.211063	0	+	91770344	91770804	0	1	460	0
chr1	91770460	91770945	melanoma_Garraway_short_term_cultures.5165	0	.	91770460	91770945	0	1	485	0
chr1	91774334	91775687	B_cells_Cheung.13966	0	.	91774334	91775687	0	1	1353	0
chr1	91774394	91777281	REMC_BreastStem.3790	0	.	91774394	91777281	0	1	2887	0
chr1	91774744	91775922	B_Cells_Pritchard.210369	0	.	91774744	91775922	0	1	1178	0
chr1	91782939	91785638	REMC_BreastStem.3796	0	.	91782939	91785638	0	1	2699	0
chr1	91908792	91911533	REMC_MyoepithelialBreast.7252	0	.	91908792	91911533	0	1	2741	0
chr1	92627693	92628149	REMC_BreastStem.3852	0	.	92627693	92628149	0	1	456	0
chr1	92627693	92628164	K562.3761	0	.	92627693	92628164	0	1	471	0
chr1	92628478	92629859	REMC_MyoepithelialBreast.7206	0	.	92628478	92629859	0	1	1381	0
chr1	92628799	92629131	H1_polyA+.9576	0	.	92628799	92629131	0	1	332	0
chr1	92628972	92629838	H1_rRNA-depleted_UCSD_REMC.7123	0	.	92628972	92629838	0	1	866	0
chr1	92628983	92629634	REMC_LuminalBreast.7668	0	.	92628983	92629634	0	1	651	0
chr1	92628989	92629634	REMC_BreastStem.3854	0	.	92628989	92629634	0	1	645	0
chr1	92630035	92630737	REMC_LuminalBreast.7670	0	.	92630035	92630737	0	1	702	0
chr1	92630822	92631535	REMC_MyoepithelialBreast.7209	0	.	92630822	92631535	0	1	713	0
chr1	92630823	92631511	REMC_BreastStem.3856	0	.	92630823	92631511	0	1	688	0
chr1	92630824	92631510	REMC_LuminalBreast.7671	0	.	92630824	92631510	0	1	686	0
chr1	92630890	92631292	H9_polyA+.3812	0	.	92630890	92631292	0	1	402	0
chr1	92630890	92631481	H1_polyA+.9588	0	.	92630890	92631481	0	1	591	0
chr1	92630890	92631510	HeLa_polyA+_Chen.2682	0	.	92630890	92631510	0	1	620	0
chr1	92630919	92631350	T47D_Burge_Thompson.2214	0	.	92630919	92631350	0	1	431	0
chr1	92630992	92631547	K562.3763	0	.	92630992	92631547	0	1	555	0
chr1	92631774	92640286	REMC_MyoepithelialBreast.7210	0	.	92631774	92640286	0	1	8512	0
chr1	92632608	92640314	B_Cells_Pritchard.213045	0	+	92632608	92640314	0	3	2903,483,4043	0,2940,3663
chr1	92632625	92640263	REMC_LuminalBreast.7673	0	.	92632625	92640263	0	1	7638	0
chr1	92632900	92633844	ZR751_Thompson.1912	0	.	92632900	92633844	0	1	944	0
chr1	92634881	92640331	B_cells_Cheung.14054	0	.	92634881	92640331	0	1	5450	0
chr1	92634965	92640272	HepG2_Caltech_ENCODE.2877	0	.	92634965	92640272	0	1	5307	0
chr1	92635049	92640379	H1_polyA+.9582	0	.	92635049	92640379	0	1	5330	0
chr1	92635446	92640200	REMC_BreastStem.3858	0	.	92635446	92640200	0	1	4754	0
chr1	92636465	92639012	prostate_normal.4769	0	.	92636465	92639012	0	1	2547	0
chr1	92637118	92640202	HIT000044376	0	+	92637118	92640202	0	1	3084	0
chr1	92637850	92638998	brain_AmbionMAQC.3507	0	.	92637850	92638998	0	1	1148	0
chr1	92638660	92639994	MDAMB468_Thompson.2007	0	.	92638660	92639994	0	1	1334	0
chr1	93052626	93053843	REMC_MyoepithelialBreast.7244	0	.	93052626	93053843	0	1	1217	0
chr1	93058046	93059197	REMC_MyoepithelialBreast.7247	0	.	93058046	93059197	0	1	1151	0
chr1	93200987	93202949	REMC_MyoepithelialBreast.7305	0	.	93200987	93202949	0	1	1962	0
chr1	93223766	93225244	B_cells_Cheung.14189	0	.	93223766	93225244	0	1	1478	0
chr1	93295232	93296103	REMC_MyoepithelialBreast.7439	0	.	93295232	93296103	0	1	871	0
chr1	93308017	93309726	REMC_MyoepithelialBreast.7442	0	.	93308017	93309726	0	1	1709	0
chr1	93517870	93520630	REMC_LuminalBreast.7828	0	.	93517870	93520630	0	1	2760	0
chr1	93518074	93520384	H1_polyA+.10045	0	.	93518074	93520384	0	1	2310	0
chr1	93520722	93534255	REMC_LuminalBreast.7829	0	.	93520722	93534255	0	1	13533	0
chr1	93522809	93530138	REMC_BreastStem.3873	0	.	93522809	93530138	0	1	7329	0
chr1	93523465	93526463	REMC_MyoepithelialBreast.7475	0	.	93523465	93526463	0	1	2998	0
chr1	93524263	93525767	H1_polyA+.10048	0	.	93524263	93525767	0	1	1504	0
chr1	93524379	93525693	B_Cells_Pritchard.215361	0	+	93524379	93525693	0	1	1314	0
chr1	93526317	93530142	B_cells_Cheung.15989	0	.	93526317	93530142	0	1	3825	0
chr1	93526619	93528006	REMC_MyoepithelialBreast.7476	0	.	93526619	93528006	0	1	1387	0
chr1	93526735	93529248	B_Cells_Pritchard.215369	0	+	93526735	93529248	0	1	2513	0
chr1	93528112	93530192	REMC_MyoepithelialBreast.7477	0	.	93528112	93530192	0	1	2080	0
chr1	93530285	93531771	B_cells_Cheung.15990	0	.	93530285	93531771	0	1	1486	0
chr1	93530299	93530966	B_Cells_Pritchard.215235	0	.	93530299	93530966	0	1	667	0
chr1	93530307	93533465	REMC_MyoepithelialBreast.7478	0	.	93530307	93533465	0	1	3158	0
chr1	93530438	93533235	REMC_BreastStem.3874	0	.	93530438	93533235	0	1	2797	0
chr1	93537481	93543524	B_cells_Cheung.15998	0	.	93537481	93543524	0	1	6043	0
chr1	93538907	93541892	REMC_LuminalBreast.7832	0	.	93538907	93541892	0	1	2985	0
chr1	93538969	93542122	REMC_MyoepithelialBreast.7481	0	.	93538969	93542122	0	1	3153	0
chr1	93539897	93541334	prostate_carcinoma.7952	0	.	93539897	93541334	0	1	1437	0
chr1	93540369	93541406	H1_polyA+.10056	0	.	93540369	93541406	0	1	1037	0
chr1	93540383	93541293	MIP101.5756	0	.	93540383	93541293	0	1	910	0
chr1	93544217	93547831	H1_polyA+.10059	0	.	93544217	93547831	0	1	3614	0
chr1	93544371	93546954	REMC_MyoepithelialBreast.7485	0	.	93544371	93546954	0	1	2583	0
chr1	93544522	93545338	REMC_BreastStem.3881	0	.	93544522	93545338	0	1	816	0
chr1	93548314	93548936	HepG2_Caltech_ENCODE.2966	0	.	93548314	93548936	0	1	622	0
chr1	93550801	93558644	REMC_LuminalBreast.7834	0	.	93550801	93558644	0	1	7843	0
chr1	93559177	93562737	REMC_MyoepithelialBreast.7488	0	.	93559177	93562737	0	1	3560	0
chr1	93563869	93577828	REMC_MyoepithelialBreast.7489	0	-	93563869	93577828	0	5	171,784,1045,180,35	0,11652,12505,13632,13924
chr1	93563930	93577716	HeLa_polyA+_Chen.2734	0	-	93563930	93577716	0	4	110,61,1045,215	0,816,12444,13571
chr1	93565370	93567890	REMC_MyoepithelialBreast.7491	0	.	93565370	93567890	0	1	2520	0
chr1	93566789	93567367	MIP101.5769	0	.	93566789	93567367	0	1	578	0
chr1	93566855	93567911	melanoma_Garraway_short_term_cultures.5278	0	.	93566855	93567911	0	1	1056	0
chr1	93575242	93577828	REMC_BreastStem.3878	0	-	93575242	93577828	0	4	415,1045,180,35	0,1132,2259,2551
chr1	93576133	93577837	prostate_carcinoma.7963	0	-	93576133	93577837	0	3	1286,180,44	0,1368,1660
chr1	93577083	93583972	ENST00000445076	0	-	93577083	93583972	0	3	336,180,104	0,418,6785
chr1	93578742	93579498	liver_polyA+.10710	0	.	93578742	93579498	0	1	756	0
chr1	93578751	93579501	H1_rRNA-depleted_UCSD_REMC.7205	0	.	93578751	93579501	0	1	750	0
chr1	93578780	93579370	BT474_Burge_Thompson.2579	0	.	93578780	93579370	0	1	590	0
chr1	93583483	93583921	HIT000327154	0	-	93583483	93583921	0	1	438	0
chr1	94085321	94085625	CD4_Snyder.5217	0	.	94085321	94085625	0	1	304	0
chr1	94085700	94086304	B_cells_Cheung.14342	0	.	94085700	94086304	0	1	604	0
chr1	94086189	94086633	T47D_Burge_Thompson.2282	0	.	94086189	94086633	0	1	444	0
chr1	94088149	94088757	REMC_MyoepithelialBreast.7432	0	.	94088149	94088757	0	1	608	0
chr1	94088198	94088917	HepG2_Caltech_ENCODE.2906	0	.	94088198	94088917	0	1	719	0
chr1	94089400	94090083	brain_AmbionMAQC.3597	0	.	94089400	94090083	0	1	683	0
chr1	94090380	94092475	HIT000015678	0	+	94090380	94092475	0	1	2095	0
chr1	94090451	94092436	brain_AmbionMAQC.3591	0	.	94090451	94092436	0	1	1985	0
chr1	94369568	94370769	REMC_MyoepithelialBreast.7517	0	.	94369568	94370769	0	1	1201	0
chr1	94399441	94403820	HIT000014961	0	-	94399441	94403820	0	1	4379	0
chr1	94400529	94401459	REMC_MyoepithelialBreast.7550	0	.	94400529	94401459	0	1	930	0
chr1	94401394	94402599	REMC_BreastStem.3947	0	.	94401394	94402599	0	1	1205	0
chr1	94401514	94402687	REMC_MyoepithelialBreast.7551	0	.	94401514	94402687	0	1	1173	0
chr1	94401536	94402032	brain_AmbionMAQC.3601	0	.	94401536	94402032	0	1	496	0
chr1	94401688	94402298	prostate_carcinoma.7849	0	.	94401688	94402298	0	1	610	0
chr1	94556274	94558054	REMC_LuminalBreast.7924	0	.	94556274	94558054	0	1	1780	0
chr1	94556288	94558116	REMC_MyoepithelialBreast.7524	0	.	94556288	94558116	0	1	1828	0
chr1	94561614	94563820	REMC_MyoepithelialBreast.7525	0	.	94561614	94563820	0	1	2206	0
chr1	94566743	94573013	Rinn_00001035	0	+	94566743	94573013	0	3	52,102,359	0,4708,5911
chr1	94571461	94580875	Rinn_00001036	0	+	94571461	94580875	0	3	92,288,28	0,1193,9386
chr1	94761908	94763339	REMC_MyoepithelialBreast.7534	0	.	94761908	94763339	0	1	1431	0
chr1	94854498	94862822	H1_polyA+.10185	0	-	94854498	94862822	0	2	717,1960	0,6364
chr1	94854547	94862758	HepG2_Caltech_ENCODE.2942	0	-	94854547	94862758	0	2	668,1896	0,6315
chr1	94854585	94862855	REMC_LuminalBreast.7939	0	-	94854585	94862855	0	4	630,110,259,1993	0,4189,5256,6277
chr1	94854602	94862860	MCF10A_Thompson.1793	0	-	94854602	94862860	0	2	613,1998	0,6260
chr1	94854888	94861028	Rinn_00002406	0	-	94854888	94861028	0	2	327,167	0,5973
chr1	94855441	94856625	H1_polyA+.10187	0	.	94855441	94856625	0	1	1184	0
chr1	94856168	94856728	prostate_carcinoma.8126	0	.	94856168	94856728	0	1	560	0
chr1	94857950	94858739	melanoma_Garraway_short_term_cultures.5362	0	.	94857950	94858739	0	1	789	0
chr1	94857980	94859084	brain_AmbionMAQC.3620	0	.	94857980	94859084	0	1	1104	0
chr1	94858241	94862027	prostate_normal.4851	0	-	94858241	94862027	0	2	643,1165	0,2621
chr1	94858241	94859228	prostate_normal.4849	0	.	94858241	94859228	0	1	987	0
chr1	94858254	94872259	prostate_carcinoma.8124	0	-	94858254	94872259	0	2	5463,311	0,13694
chr1	94859280	94862328	HIT000002869	0	-	94859280	94862328	0	2	820,1466	0,1582
chr1	94859293	94862328	Rinn_00000576	0	-	94859293	94862328	0	2	807,1467	0,1568
chr1	94859294	94862328	ENST00000435559	0	-	94859294	94862328	0	2	806,1466	0,1568
chr1	94859682	94868710	prostate_carcinoma.8125	0	.	94859682	94868710	0	1	9028	0
chr1	94860336	94862758	HepG2_Caltech_ENCODE.2943	0	.	94860336	94862758	0	1	2422	0
chr1	94860710	94862815	MIP101.5578	0	.	94860710	94862815	0	1	2105	0
chr1	94860798	94862062	brain_AmbionMAQC.3622	0	.	94860798	94862062	0	1	1264	0
chr1	94860818	94862517	BT20_Thompson.1802	0	.	94860818	94862517	0	1	1699	0
chr1	94860820	94862979	prostate_normal.4850	0	.	94860820	94862979	0	1	2159	0
chr1	94860874	94861318	H9_polyA+.3939	0	.	94860874	94861318	0	1	444	0
chr1	94863480	94871562	H1_polyA+.10189	0	.	94863480	94871562	0	1	8082	0
chr1	94865060	94869177	prostate_normal.4854	0	.	94865060	94869177	0	1	4117	0
chr1	94866628	94868323	HepG2_Caltech_ENCODE.2947	0	.	94866628	94868323	0	1	1695	0
chr1	94867323	94869046	MIP101.5580	0	.	94867323	94869046	0	1	1723	0
chr1	94896041	94896966	prostate_carcinoma.8130	0	.	94896041	94896966	0	1	925	0
chr1	94904036	94910959	prostate_carcinoma.8134	0	.	94904036	94910959	0	1	6923	0
chr1	94906130	94908261	H1_polyA+.10192	0	.	94906130	94908261	0	1	2131	0
chr1	94908362	94910360	REMC_LuminalBreast.7945	0	.	94908362	94910360	0	1	1998	0
chr1	94910015	94910911	MCF10A_Thompson.1795	0	.	94910015	94910911	0	1	896	0
chr1	94912492	94916171	prostate_carcinoma.8139	0	.	94912492	94916171	0	1	3679	0
chr1	94912878	94913969	MIP101.5585	0	.	94912878	94913969	0	1	1091	0
chr1	94917364	95058379	REMC_MyoepithelialBreast.7542	0	-	94917364	95058379	0	6	387,177,44,180,87,280	0,28407,41439,53037,120144,140735
chr1	94921388	94922715	prostate_carcinoma.8141	0	.	94921388	94922715	0	1	1327	0
chr1	94922442	94926463	Rinn_00002095	0	+	94922442	94926463	0	2	765,428	0,3593
chr1	94943157	94943713	prostate_carcinoma.8144	0	.	94943157	94943713	0	1	556	0
chr1	94945489	94946322	prostate_carcinoma.8145	0	.	94945489	94946322	0	1	833	0
chr1	94945569	94946107	melanoma_Garraway_short_term_cultures.5374	0	.	94945569	94946107	0	1	538	0
chr1	94946455	94950515	prostate_carcinoma.8146	0	.	94946455	94950515	0	1	4060	0
chr1	94950625	94951532	prostate_carcinoma.8147	0	.	94950625	94951532	0	1	907	0
chr1	94962789	94966846	prostate_carcinoma.8151	0	.	94962789	94966846	0	1	4057	0
chr1	94965948	94966847	MIP101.5589	0	.	94965948	94966847	0	1	899	0
chr1	94966259	94966763	prostate_normal.4862	0	.	94966259	94966763	0	1	504	0
chr1	94966553	94969095	khalil_73	0	.	94966553	94969095	0	2	90,351	0,2191
chr1	94967098	94968300	H1_polyA+.10204	0	.	94967098	94968300	0	1	1202	0
chr1	94967120	94968392	prostate_carcinoma.8152	0	.	94967120	94968392	0	1	1272	0
chr1	94967466	94968383	prostate_normal.4863	0	.	94967466	94968383	0	1	917	0
chr1	94968566	94969421	prostate_carcinoma.8155	0	.	94968566	94969421	0	1	855	0
chr1	94968756	94969260	liver_polyA+.10906	0	.	94968756	94969260	0	1	504	0
chr1	94983464	94985822	prostate_carcinoma.8159	0	.	94983464	94985822	0	1	2358	0
chr1	94983513	94986530	MIP101.5598	0	.	94983513	94986530	0	1	3017	0
chr1	94984582	94987703	REMC_LuminalBreast.7947	0	.	94984582	94987703	0	1	3121	0
chr1	95021821	95022585	REMC_LuminalBreast.7953	0	.	95021821	95022585	0	1	764	0
chr1	95033206	95034381	H1_polyA+.10216	0	.	95033206	95034381	0	1	1175	0
chr1	95034965	95035925	H1_polyA+.10217	0	.	95034965	95035925	0	1	960	0
chr1	95038970	95040076	H1_polyA+.10220	0	.	95038970	95040076	0	1	1106	0
chr1	95048949	95050748	H1_polyA+.10227	0	.	95048949	95050748	0	1	1799	0
chr1	95165440	95205605	Rinn_00001039	0	+	95165440	95205605	0	4	1106,115,193,225	0,4574,35681,39940
chr1	95165553	95201746	Rinn_00001040	0	+	95165553	95201746	0	3	993,115,625	0,4461,35568
chr1	95165553	95201746	Rinn_00001041	0	+	95165553	95201746	0	4	993,115,118,625	0,4461,33906,35568
chr1	95165553	95201746	Rinn_00001042	0	+	95165553	95201746	0	4	993,115,98,625	0,4461,12418,35568
chr1	95166171	95201414	NR_033998	0	+	95166171	95201414	0	4	375,114,117,346	0,3844,33289,34897
chr1	95166171	95201414	ENST00000438509	0	+	95166171	95201414	0	4	375,114,117,346	0,3844,33289,34897
chr1	95169885	95201387	B_cells_Cheung.14489	0	+	95169885	95201387	0	3	244,117,319	0,29575,31183
chr1	95170012	95201361	MDAMB231_Thompson.1970	0	+	95170012	95201361	0	3	117,117,293	0,29448,31056
chr1	95170015	95201432	REMC_LuminalBreast.7965	0	+	95170015	95201432	0	3	114,117,310	0,29445,31107
chr1	95170022	95201384	H9_polyA+.3954	0	+	95170022	95201384	0	3	107,192,262	0,29363,31100
chr1	95188045	95189409	REMC_BreastStem.4019	0	.	95188045	95189409	0	1	1364	0
chr1	95188438	95189540	REMC_MyoepithelialBreast.7591	0	.	95188438	95189540	0	1	1102	0
chr1	95188659	95189508	prostate_carcinoma.8193	0	.	95188659	95189508	0	1	849	0
chr1	95195649	95196151	prostate_carcinoma.8194	0	.	95195649	95196151	0	1	502	0
chr1	95199097	95201362	prostate_carcinoma.8197	0	+	95199097	95201362	0	2	480,294	0,1971
chr1	95199210	95201401	prostate_normal.4977	0	+	95199210	95201401	0	2	367,333	0,1858
chr1	95199312	95201420	MDAMB468_Thompson.2330	0	+	95199312	95201420	0	2	265,352	0,1756
chr1	95199435	95201397	liver_polyA+.10964	0	+	95199435	95201397	0	2	142,275	0,1687
chr1	95199459	95201399	brain_AmbionMAQC.3754	0	+	95199459	95201399	0	2	118,277	0,1663
chr1	95199468	95201414	ENST00000456582	0	+	95199468	95201414	0	2	109,292	0,1654
chr1	95201069	95201399	brain_AmbionMAQC.3755	0	.	95201069	95201399	0	1	330	0
chr1	95206105	95207114	prostate_carcinoma.7897	0	.	95206105	95207114	0	1	1009	0
chr1	95206239	95207183	H1_polyA+.9719	0	.	95206239	95207183	0	1	944	0
chr1	95212435	95213822	REMC_LuminalBreast.7972	0	.	95212435	95213822	0	1	1387	0
chr1	95212539	95213874	B_Cells_Pritchard.219461	0	.	95212539	95213874	0	1	1335	0
chr1	95212553	95213841	prostate_carcinoma.7900	0	.	95212553	95213841	0	1	1288	0
chr1	95608873	95610061	prostate_carcinoma.7955	0	.	95608873	95610061	0	1	1188	0
chr1	95611339	95613328	prostate_carcinoma.7956	0	.	95611339	95613328	0	1	1989	0
chr1	95611914	95613726	B_cells_Cheung.14565	0	.	95611914	95613726	0	1	1812	0
chr1	95748313	95860878	ENST00000432146	0	+	95748313	95860878	0	2	193,126	0,112439
chr1	95997439	95998245	MDAMB468_Thompson.2078	0	.	95997439	95998245	0	1	806	0
chr1	96000518	96002274	MDAMB468_Thompson.2081	0	.	96000518	96002274	0	1	1756	0
chr1	96319313	96321296	MCF7_Burge_Thompson.2334	0	.	96319313	96321296	0	1	1983	0
chr1	96708805	96710499	REMC_LuminalBreast.8000	0	.	96708805	96710499	0	1	1694	0
chr1	96709402	96710665	REMC_MyoepithelialBreast.7569	0	.	96709402	96710665	0	1	1263	0
chr1	97056096	97057047	B_Cells_Pritchard.224265	0	-	97056096	97057047	0	2	247,632	0,319
chr1	97081271	97081844	B_cells_Cheung.14596	0	.	97081271	97081844	0	1	573	0
chr1	97276930	97278643	REMC_LuminalBreast.8014	0	.	97276930	97278643	0	1	1713	0
chr1	98213493	98233442	khalil_74	0	.	98213493	98233442	0	6	187,173,1691,294,409,1162	0,5287,7987,12565,15928,18787
chr1	98222094	98222849	melanoma_Garraway_short_term_cultures.5452	0	.	98222094	98222849	0	1	755	0
chr1	99748636	99750330	H1_polyA+.9772	0	+	99748636	99750330	0	2	328,67	0,1627
chr1	99941774	99943038	melanoma_Garraway_short_term_cultures.5463	0	.	99941774	99943038	0	1	1264	0
chr1	99941796	99945107	B_Cells_Pritchard.229485	0	-	99941796	99945107	0	1	3311	0
chr1	99942114	99943607	REMC_BreastStem.4053	0	.	99942114	99943607	0	1	1493	0
chr1	99942114	99943128	MDAMB468_Thompson.2092	0	.	99942114	99943128	0	1	1014	0
chr1	99942118	99944367	REMC_LuminalBreast.8067	0	.	99942118	99944367	0	1	2249	0
chr1	99942307	99943900	T47D_Burge_Thompson.2320	0	.	99942307	99943900	0	1	1593	0
chr1	99942875	99943211	MeI_Garraway.1510	0	.	99942875	99943211	0	1	336	0
chr1	99944370	99945447	REMC_BreastStem.4055	0	.	99944370	99945447	0	1	1077	0
chr1	99944390	99944844	prostate_carcinoma.8060	0	.	99944390	99944844	0	1	454	0
chr1	99944398	99944967	prostate_normal.4932	0	.	99944398	99944967	0	1	569	0
chr1	100266323	100267098	HeLa_polyA+_Chen.2838	0	.	100266323	100267098	0	1	775	0
chr1	100272603	100274308	B_Cells_Pritchard.230215	0	.	100272603	100274308	0	1	1705	0
chr1	100273916	100274550	B_cells_Cheung.14919	0	.	100273916	100274550	0	1	634	0
chr1	100419923	100422302	B_cells_Cheung.14966	0	.	100419923	100422302	0	1	2379	0
chr1	100419937	100423301	B_Cells_Pritchard.230465	0	-	100419937	100423301	0	2	2414,768	0,2596
chr1	100420571	100423301	B_Cells_Pritchard.230463	0	+	100420571	100423301	0	3	1242,331,768	0,1272,1962
chr1	100770153	100770536	CD4_Plagnol_resting.5692	0	.	100770153	100770536	0	1	383	0
chr1	100925480	100932008	REMC_BreastStem.4091	0	.	100925480	100932008	0	1	6528	0
chr1	101221820	101222858	H1_polyA+.10100	0	.	101221820	101222858	0	1	1038	0
chr1	101223210	101224806	REMC_BreastStem.4692	0	.	101223210	101224806	0	1	1596	0
chr1	101223432	101224798	H1_polyA+.10101	0	.	101223432	101224798	0	1	1366	0
chr1	101224039	101225110	CD4_Plagnol_resting.5804	0	.	101224039	101225110	0	1	1071	0
chr1	101224557	101224902	CD4_Plagnol_activated.6047	0	.	101224557	101224902	0	1	345	0
chr1	101270532	101275927	MIP101.5830	0	.	101270532	101275927	0	1	5395	0
chr1	101272343	101279180	B_cells_Cheung.15573	0	.	101272343	101279180	0	1	6837	0
chr1	101273149	101274599	HeLa_polyA+_Chen.2999	0	.	101273149	101274599	0	1	1450	0
chr1	101273425	101274279	B_Cells_Pritchard.232311	0	.	101273425	101274279	0	1	854	0
chr1	101277523	101278563	HepG2_Caltech_ENCODE.3100	0	.	101277523	101278563	0	1	1040	0
chr1	101277694	101278726	REMC_BreastStem.4697	0	.	101277694	101278726	0	1	1032	0
chr1	101279291	101283900	B_cells_Cheung.15574	0	.	101279291	101283900	0	1	4609	0
chr1	101279422	101283251	MIP101.5835	0	.	101279422	101283251	0	1	3829	0
chr1	101279478	101282256	K562.4074	0	.	101279478	101282256	0	1	2778	0
chr1	101279637	101282528	prostate_carcinoma.8248	0	.	101279637	101282528	0	1	2891	0
chr1	101279656	101282295	melanoma_Garraway_short_term_cultures.5571	0	.	101279656	101282295	0	1	2639	0
chr1	101301316	101303218	B_cells_Cheung.15587	0	.	101301316	101303218	0	1	1902	0
chr1	101301330	101303198	B_Cells_Pritchard.232429	0	.	101301330	101303198	0	1	1868	0
chr1	101302062	101303231	MIP101.5840	0	.	101302062	101303231	0	1	1169	0
chr1	101305473	101306173	REMC_LuminalBreast.8489	0	.	101305473	101306173	0	1	700	0
chr1	101308402	101308891	B_Cells_Pritchard.232451	0	.	101308402	101308891	0	1	489	0
chr1	101313124	101323722	B_Cells_Pritchard.232459	0	-	101313124	101323722	0	4	3558,3634,1110,1083	0,3800,7488,9515
chr1	101320597	101325405	HIT000004825	0	-	101320597	101325405	0	2	1121,410	0,4398
chr1	101320737	101321246	CD4_Plagnol_resting.5718	0	.	101320737	101321246	0	1	509	0
chr1	101320871	101321266	A549_Myers.5422	0	.	101320871	101321266	0	1	395	0
chr1	101322695	101323675	prostate_normal.5045	0	.	101322695	101323675	0	1	980	0
chr1	101323239	101323729	CD4_Plagnol_activated.6070	0	.	101323239	101323729	0	1	490	0
chr1	101323246	101323706	CD4_Snyder.5858	0	.	101323246	101323706	0	1	460	0
chr1	101323253	101323735	liver_polyA+.11532	0	.	101323253	101323735	0	1	482	0
chr1	101323270	101323709	CD4_Plagnol_resting.5720	0	.	101323270	101323709	0	1	439	0
chr1	101470933	101471983	B_cells_Cheung.15118	0	.	101470933	101471983	0	1	1050	0
chr1	101486810	101487217	CD4_Plagnol_activated.6427	0	.	101486810	101487217	0	1	407	0
chr1	101490148	101490547	CD4_Snyder.5869	0	.	101490148	101490547	0	1	399	0
chr1	101492087	101493138	CD4_Plagnol_activated.6429	0	.	101492087	101493138	0	1	1051	0
chr1	101532934	101548187	B_cells_Cheung.15147	0	.	101532934	101548187	0	1	15253	0
chr1	101533054	101548614	B_Cells_Pritchard.232865	0	+	101533054	101548614	0	5	1973,3851,1114,1283,6716	0,2094,6061,7463,8844
chr1	101594406	101600720	B_Cells_Pritchard.233041	0	-	101594406	101600720	0	2	1589,2798	0,3516
chr1	101597926	101598340	B_cells_Cheung.15161	0	.	101597926	101598340	0	1	414	0
chr1	101598399	101599622	B_cells_Cheung.15162	0	.	101598399	101599622	0	1	1223	0
chr1	101601889	101604620	B_Cells_Pritchard.233051	0	.	101601889	101604620	0	1	2731	0
chr1	101602016	101607405	B_cells_Cheung.15165	0	.	101602016	101607405	0	1	5389	0
chr1	101609030	101648469	B_cells_Cheung.15720	0	-	101609030	101648469	0	6	659,13378,74,158,55,234	0,12504,26844,35607,37963,39205
chr1	101626172	101631803	B_Cells_Pritchard.234581	0	+	101626172	101631803	0	2	568,3951	0,1680
chr1	101631898	101635206	B_cells_Cheung.15721	0	.	101631898	101635206	0	1	3308	0
chr1	101631912	101639982	B_Cells_Pritchard.233157	0	+	101631912	101639982	0	3	3694,224,1568	0,6024,6502
chr1	101631912	101639161	B_Cells_Pritchard.233159	0	-	101631912	101639161	0	2	3000,3287	0,3962
chr1	101636344	101651913	B_cells_Cheung.15722	0	.	101636344	101651913	0	1	15569	0
chr1	101640088	101649890	B_Cells_Pritchard.233287	0	-	101640088	101649890	0	5	5006,954,146,1356,233	0,5352,6814,8147,9569
chr1	101650016	101651920	B_Cells_Pritchard.233249	0	.	101650016	101651920	0	1	1904	0
chr1	101652083	101654426	B_cells_Cheung.15727	0	.	101652083	101654426	0	1	2343	0
chr1	101653101	101653440	B_Cells_Pritchard.233255	0	.	101653101	101653440	0	1	339	0
chr1	101654551	101658361	B_cells_Cheung.15728	0	.	101654551	101658361	0	1	3810	0
chr1	101663863	101667862	B_cells_Cheung.15733	0	.	101663863	101667862	0	1	3999	0
chr1	101665123	101666413	B_Cells_Pritchard.233317	0	.	101665123	101666413	0	1	1290	0
chr1	101679980	101687369	B_Cells_Pritchard.233449	0	+	101679980	101687369	0	3	3966,345,2912	0,3978,4477
chr1	101682638	101687369	B_Cells_Pritchard.233451	0	-	101682638	101687369	0	4	1665,419,928,650	0,1905,2406,4081
chr1	101700164	101701386	B_cells_Cheung.15235	0	.	101700164	101701386	0	1	1222	0
chr1	101708943	101709552	B_cells_Cheung.15240	0	.	101708943	101709552	0	1	609	0
chr1	101838572	101838938	H1_polyA+.9921	0	.	101838572	101838938	0	1	366	0
chr1	103001464	103091986	Rinn_00000591	0	-	103001464	103091986	0	7	185,101,109,29,136,126,252	0,3235,4201,4453,9636,36482,90270
chr1	103593556	103608574	ENST00000455771	0	-	103593556	103608574	0	3	146,87,206	0,11208,14812
chr1	103594231	103608574	ENST00000451705	0	-	103594231	103608574	0	3	62,87,206	0,10533,14137
chr1	104800633	104811914	HepG2_Caltech_ENCODE.3068	0	.	104800633	104811914	0	1	11281	0
chr1	104804170	104804722	B_Cells_Pritchard.238055	0	.	104804170	104804722	0	1	552	0
chr1	106537097	106538368	MCF7_Burge_Thompson.2416	0	.	106537097	106538368	0	1	1271	0
chr1	106545157	106547151	MCF7_Burge_Thompson.2424	0	.	106545157	106547151	0	1	1994	0
chr1	106578034	106578617	MCF7_Burge_Thompson.2524	0	.	106578034	106578617	0	1	583	0
chr1	106607675	106610659	MCF7_Burge_Thompson.2525	0	.	106607675	106610659	0	1	2984	0
chr1	106614152	106615367	MCF7_Burge_Thompson.2529	0	.	106614152	106615367	0	1	1215	0
chr1	106642834	106643476	MCF7_Burge_Thompson.2535	0	.	106642834	106643476	0	1	642	0
chr1	106650285	106651508	MCF7_Burge_Thompson.2422	0	.	106650285	106651508	0	1	1223	0
chr1	106658987	106663224	MCF7_Burge_Thompson.2432	0	.	106658987	106663224	0	1	4237	0
chr1	106954699	106955011	MCF7_Burge_Thompson.2501	0	.	106954699	106955011	0	1	312	0
chr1	106963487	106964062	MCF7_Burge_Thompson.2502	0	.	106963487	106964062	0	1	575	0
chr1	107002654	107008893	MCF7_Burge_Thompson.2509	0	-	107002654	107008893	0	2	350,212	0,6027
chr1	107075002	107075420	MCF7_Burge_Thompson.2520	0	.	107075002	107075420	0	1	418	0
chr1	107116965	107117641	MCF7_Burge_Thompson.2456	0	.	107116965	107117641	0	1	676	0
chr1	107866786	107879920	pHIT000071247	0	+	107866786	107879920	0	4	5,178,200,115	0,4366,9952,13019
chr1	107866786	107876938	pHIT000001804	0	+	107866786	107876938	0	3	5,178,200	0,4366,9952
chr1	108429370	108455818	pHIT000098112	0	+	108429370	108455818	0	4	38,139,75,273	0,2832,22910,26175
chr1	108464394	108465522	REMC_LuminalBreast.8445	0	.	108464394	108465522	0	1	1128	0
chr1	108464410	108465522	melanoma_Garraway_short_term_cultures.5610	0	.	108464410	108465522	0	1	1112	0
chr1	108472485	108476934	H1_polyA+.10062	0	.	108472485	108476934	0	1	4449	0
chr1	108472531	108475444	melanoma_Garraway_short_term_cultures.5613	0	.	108472531	108475444	0	1	2913	0
chr1	108473104	108476821	HeLa_polyA+_Chen.2960	0	.	108473104	108476821	0	1	3717	0
chr1	108473521	108475257	MeWo_Garraway.3009	0	.	108473521	108475257	0	1	1736	0
chr1	108474329	108475392	MCF7_Burge_Thompson.2467	0	.	108474329	108475392	0	1	1063	0
chr1	108474509	108475467	MIP101.5891	0	.	108474509	108475467	0	1	958	0
chr1	108474612	108475466	prostate_carcinoma.8280	0	.	108474612	108475466	0	1	854	0
chr1	108474675	108475574	MCF10A_Thompson.1884	0	.	108474675	108475574	0	1	899	0
chr1	108474802	108475273	BT474_Burge_Thompson.2702	0	.	108474802	108475273	0	1	471	0
chr1	108474811	108475414	CD4_Plagnol_activated.5921	0	.	108474811	108475414	0	1	603	0
chr1	108474853	108475488	MDAMB231_Thompson.1952	0	.	108474853	108475488	0	1	635	0
chr1	108474871	108475366	B_cells_Cheung.15411	0	.	108474871	108475366	0	1	495	0
chr1	108474876	108475392	B_Cells_Pritchard.244973	0	.	108474876	108475392	0	1	516	0
chr1	108476201	108476567	MCF7_Burge_Thompson.2468	0	.	108476201	108476567	0	1	366	0
chr1	108873815	108874541	HeLa_polyA+_Chen.3009	0	.	108873815	108874541	0	1	726	0
chr1	108876601	108878248	HeLa_polyA+_Chen.3012	0	.	108876601	108878248	0	1	1647	0
chr1	108881020	108884260	HeLa_polyA+_Chen.3015	0	.	108881020	108884260	0	1	3240	0
chr1	109047873	109049521	melanoma_Garraway_short_term_cultures.5642	0	.	109047873	109049521	0	1	1648	0
chr1	109048583	109050582	REMC_BreastStem.4130	0	.	109048583	109050582	0	1	1999	0
chr1	109401632	109402276	REMC_MyoepithelialBreast.8112	0	.	109401632	109402276	0	1	644	0
chr1	109424082	109424842	REMC_LuminalBreast.8575	0	.	109424082	109424842	0	1	760	0
chr1	109584075	109585313	MCF7_Burge_Thompson.2595	0	.	109584075	109585313	0	1	1238	0
chr1	109584140	109585108	MDAMB231_Thompson.1998	0	.	109584140	109585108	0	1	968	0
chr1	109584376	109585163	brain_AmbionMAQC.3899	0	.	109584376	109585163	0	1	787	0
chr1	109584524	109584847	B_cells_Cheung.15697	0	.	109584524	109584847	0	1	323	0
chr1	109584574	109585316	CD4_Plagnol_activated.6014	0	.	109584574	109585316	0	1	742	0
chr1	109585437	109587076	melanoma_Garraway_short_term_cultures.5688	0	.	109585437	109587076	0	1	1639	0
chr1	109585458	109587015	B_Cells_Pritchard.247219	0	-	109585458	109587015	0	2	442,1060	0,497
chr1	109585458	109587015	B_Cells_Pritchard.247217	0	+	109585458	109587015	0	1	1557	0
chr1	109585911	109586656	BT474_Burge_Thompson.2724	0	.	109585911	109586656	0	1	745	0
chr1	109585980	109587023	MCF7_Burge_Thompson.2573	0	.	109585980	109587023	0	1	1043	0
chr1	109586115	109586692	MIP101.6263	0	.	109586115	109586692	0	1	577	0
chr1	109588292	109592237	REMC_BreastStem.4227	0	.	109588292	109592237	0	1	3945	0
chr1	109590503	109592559	REMC_LuminalBreast.8625	0	.	109590503	109592559	0	1	2056	0
chr1	109621209	109622331	H1_polyA+.10265	0	.	109621209	109622331	0	1	1122	0
chr1	109775054	109776255	REMC_MyoepithelialBreast.8135	0	.	109775054	109776255	0	1	1201	0
chr1	109775718	109776195	B_Cells_Pritchard.246795	0	.	109775718	109776195	0	1	477	0
chr1	109804000	109804659	H1_polyA+.10282	0	.	109804000	109804659	0	1	659	0
chr1	109862299	109879578	B_Cells_Pritchard.247023	0	-	109862299	109879578	0	2	47,351	0,16928
chr1	109945038	109945616	MeWo_Garraway.3082	0	.	109945038	109945616	0	1	578	0
chr1	109979366	109986374	REMC_MyoepithelialBreast.8143	0	.	109979366	109986374	0	1	7008	0
chr1	109980220	109983928	REMC_LuminalBreast.8657	0	.	109980220	109983928	0	1	3708	0
chr1	109982578	109983532	melanoma_Garraway_short_term_cultures.5736	0	.	109982578	109983532	0	1	954	0
chr1	109982968	109983614	B_Cells_Pritchard.247321	0	.	109982968	109983614	0	1	646	0
chr1	109985861	109987572	REMC_LuminalBreast.8659	0	.	109985861	109987572	0	1	1711	0
chr1	109986550	109987925	REMC_MyoepithelialBreast.8144	0	.	109986550	109987925	0	1	1375	0
chr1	109986761	109987447	melanoma_Garraway_short_term_cultures.5737	0	.	109986761	109987447	0	1	686	0
chr1	109987716	109988427	REMC_LuminalBreast.8660	0	.	109987716	109988427	0	1	711	0
chr1	109990081	109990983	REMC_LuminalBreast.8661	0	.	109990081	109990983	0	1	902	0
chr1	109991087	109992754	REMC_LuminalBreast.8662	0	.	109991087	109992754	0	1	1667	0
chr1	109991093	109992080	REMC_MyoepithelialBreast.8145	0	.	109991093	109992080	0	1	987	0
chr1	109992954	109994547	REMC_MyoepithelialBreast.8147	0	.	109992954	109994547	0	1	1593	0
chr1	110120267	110122626	T47D_Burge_Thompson.2595	0	.	110120267	110122626	0	1	2359	0
chr1	110146613	110147186	T47D_Burge_Thompson.2435	0	.	110146613	110147186	0	1	573	0
chr1	110151639	110152243	T47D_Burge_Thompson.2437	0	.	110151639	110152243	0	1	604	0
chr1	110163094	110163793	T47D_Burge_Thompson.2440	0	.	110163094	110163793	0	1	699	0
chr1	110185374	110185981	H1_polyA+.10323	0	.	110185374	110185981	0	1	607	0
chr1	110207791	110209607	REMC_LuminalBreast.8701	0	.	110207791	110209607	0	1	1816	0
chr1	110208385	110212000	H1_polyA+.10326	0	.	110208385	110212000	0	1	3615	0
chr1	110216540	110217713	H1_polyA+.10330	0	.	110216540	110217713	0	1	1173	0
chr1	110227652	110230188	REMC_LuminalBreast.8703	0	.	110227652	110230188	0	1	2536	0
chr1	110240286	110241696	K562.4159	0	.	110240286	110241696	0	1	1410	0
chr1	110250607	110251967	B_Cells_Pritchard.249183	0	-	110250607	110251967	0	1	1360	0
chr1	110250661	110251936	B_cells_Cheung.15816	0	.	110250661	110251936	0	1	1275	0
chr1	110277760	110280695	REMC_MyoepithelialBreast.8312	0	.	110277760	110280695	0	1	2935	0
chr1	110280802	110281489	REMC_MyoepithelialBreast.8313	0	.	110280802	110281489	0	1	687	0
chr1	110313071	110314106	REMC_BreastStem.4240	0	.	110313071	110314106	0	1	1035	0
chr1	110324963	110325445	A549_Myers.5665	0	.	110324963	110325445	0	1	482	0
chr1	110419692	110424417	MIP101.6082	0	.	110419692	110424417	0	1	4725	0
chr1	110423415	110424023	BT474_Burge_Thompson.2781	0	.	110423415	110424023	0	1	608	0
chr1	110424255	110425778	HeLa_polyA+_Chen.3102	0	.	110424255	110425778	0	1	1523	0
chr1	110424549	110425945	BT474_Burge_Thompson.2782	0	.	110424549	110425945	0	1	1396	0
chr1	110424628	110425952	MIP101.6083	0	.	110424628	110425952	0	1	1324	0
chr1	110426086	110429467	MIP101.6084	0	.	110426086	110429467	0	1	3381	0
chr1	110426158	110426963	MDAMB468_Thompson.2229	0	.	110426158	110426963	0	1	805	0
chr1	110428356	110429397	B_cells_Cheung.15822	0	.	110428356	110429397	0	1	1041	0
chr1	110428378	110428999	B_Cells_Pritchard.248769	0	.	110428378	110428999	0	1	621	0
chr1	110428445	110429336	prostate_carcinoma.8443	0	.	110428445	110429336	0	1	891	0
chr1	110442531	110442920	A549_Myers.5667	0	.	110442531	110442920	0	1	389	0
chr1	110450889	110451990	REMC_BreastStem.4395	0	.	110450889	110451990	0	1	1101	0
chr1	110552977	110554132	Rinn_00000601	0	-	110552977	110554132	0	2	372,378	0,777
chr1	110552978	110554132	ENST00000455967	0	-	110552978	110554132	0	2	371,377	0,777
chr1	110631706	110633384	H1_polyA+.10375	0	.	110631706	110633384	0	1	1678	0
chr1	110631845	110633704	REMC_LuminalBreast.8822	0	.	110631845	110633704	0	1	1859	0
chr1	110633844	110634596	REMC_LuminalBreast.8823	0	.	110633844	110634596	0	1	752	0
chr1	110634087	110634538	B_cells_Cheung.15841	0	.	110634087	110634538	0	1	451	0
chr1	110640831	110644236	REMC_LuminalBreast.8827	0	.	110640831	110644236	0	1	3405	0
chr1	110640886	110644159	H1_polyA+.10380	0	.	110640886	110644159	0	1	3273	0
chr1	110641515	110642146	prostate_carcinoma.8455	0	.	110641515	110642146	0	1	631	0
chr1	110647268	110650725	REMC_LuminalBreast.8829	0	.	110647268	110650725	0	1	3457	0
chr1	110647276	110648496	H1_polyA+.10381	0	.	110647276	110648496	0	1	1220	0
chr1	110658106	110659460	CD4_Plagnol_activated.6168	0	.	110658106	110659460	0	1	1354	0
chr1	110659727	110675224	B_Cells_Pritchard.249419	0	-	110659727	110675224	0	3	169,118,46	0,3182,15451
chr1	110676627	110677364	B_cells_Cheung.15937	0	.	110676627	110677364	0	1	737	0
chr1	110681528	110682109	testes_Burge.4735	0	.	110681528	110682109	0	1	581	0
chr1	110681533	110682140	HIT000067343	0	-	110681533	110682140	0	1	607	0
chr1	110681561	110682175	brain_AmbionMAQC.3900	0	.	110681561	110682175	0	1	614	0
chr1	110698932	110699848	REMC_BreastStem.4305	0	.	110698932	110699848	0	1	916	0
chr1	110702007	110702543	NEC_from_H9.6719	0	-	110702007	110702543	0	2	207,198	0,338
chr1	110702036	110702448	H1_rRNA-depleted_UCSD_REMC.7856	0	.	110702036	110702448	0	1	412	0
chr1	110703525	110704581	REMC_MyoepithelialBreast.8211	0	.	110703525	110704581	0	1	1056	0
chr1	110704176	110704591	REMC_LuminalBreast.8849	0	.	110704176	110704591	0	1	415	0
chr1	110770130	110770576	B_Cells_Pritchard.249715	0	.	110770130	110770576	0	1	446	0
chr1	110816802	110817822	testes_Burge.4745	0	-	110816802	110817822	0	2	203,113	0,907
chr1	110821648	110822101	A549_Myers.5731	0	.	110821648	110822101	0	1	453	0
chr1	110822693	110823501	brain_AmbionMAQC.3918	0	.	110822693	110823501	0	1	808	0
chr1	110853839	110854491	B_cells_Cheung.15875	0	.	110853839	110854491	0	1	652	0
chr1	110853851	110854426	B_Cells_Pritchard.249949	0	.	110853851	110854426	0	1	575	0
chr1	110899545	110900000	A549_Myers.5736	0	.	110899545	110900000	0	1	455	0
chr1	110981593	110982140	B_Cells_Pritchard.250277	0	.	110981593	110982140	0	1	547	0
chr1	110997665	111003867	CD4_Plagnol_resting.6050	0	.	110997665	111003867	0	1	6202	0
chr1	110997694	111001213	CD4_Snyder.6292	0	.	110997694	111001213	0	1	3519	0
chr1	110997727	111002445	B_cells_Cheung.15896	0	.	110997727	111002445	0	1	4718	0
chr1	110997968	111000330	REMC_MyoepithelialBreast.8224	0	.	110997968	111000330	0	1	2362	0
chr1	110998020	111002820	B_Cells_Pritchard.250331	0	+	110998020	111002820	0	1	4800	0
chr1	110999331	111001208	prostate_carcinoma.8490	0	.	110999331	111001208	0	1	1877	0
chr1	110999384	111000200	brain_AmbionMAQC.3922	0	.	110999384	111000200	0	1	816	0
chr1	110999474	111001185	HIT000300893	0	+	110999474	111001185	0	1	1711	0
chr1	110999536	111000392	REMC_BreastStem.4318	0	.	110999536	111000392	0	1	856	0
chr1	111001267	111003649	REMC_MyoepithelialBreast.8226	0	.	111001267	111003649	0	1	2382	0
chr1	111001291	111001790	brain_AmbionMAQC.3924	0	.	111001291	111001790	0	1	499	0
chr1	111030930	111038158	pHIT000098161	0	-	111030930	111038158	0	2	216,570	0,6658
chr1	111124692	111125273	B_Cells_Pritchard.250681	0	.	111124692	111125273	0	1	581	0
chr1	111168414	111168723	B_Cells_Pritchard.250785	0	.	111168414	111168723	0	1	309	0
chr1	111193827	111195576	B_Cells_Pritchard.250821	0	.	111193827	111195576	0	1	1749	0
chr1	111208220	111209163	B_Cells_Pritchard.250877	0	.	111208220	111209163	0	1	943	0
chr1	111245828	111249309	CD4_Snyder.6297	0	.	111245828	111249309	0	1	3481	0
chr1	111246750	111247333	prostate_normal.5180	0	.	111246750	111247333	0	1	583	0
chr1	111253991	111256084	CD4_Plagnol_resting.6039	0	.	111253991	111256084	0	1	2093	0
chr1	111276646	111278458	REMC_LuminalBreast.8870	0	.	111276646	111278458	0	1	1812	0
chr1	111276714	111279557	B_Cells_Pritchard.250953	0	.	111276714	111279557	0	1	2843	0
chr1	111276841	111283292	B_cells_Cheung.16675	0	.	111276841	111283292	0	1	6451	0
chr1	111277424	111279975	REMC_MyoepithelialBreast.8238	0	.	111277424	111279975	0	1	2551	0
chr1	111280456	111286498	HIT000095305	0	-	111280456	111286498	0	1	6042	0
chr1	111283519	111287653	B_cells_Cheung.16676	0	.	111283519	111287653	0	1	4134	0
chr1	111283534	111289551	REMC_BreastStem.4328	0	.	111283534	111289551	0	1	6017	0
chr1	111283589	111285027	B_Cells_Pritchard.250967	0	.	111283589	111285027	0	1	1438	0
chr1	111284198	111289551	REMC_MyoepithelialBreast.8241	0	.	111284198	111289551	0	1	5353	0
chr1	111287640	111289741	BT474_Burge_Thompson.2794	0	.	111287640	111289741	0	1	2101	0
chr1	111287872	111290235	BT20_Thompson.1982	0	.	111287872	111290235	0	1	2363	0
chr1	111288205	111289535	MDAMB468_Thompson.2280	0	.	111288205	111289535	0	1	1330	0
chr1	111289070	111289624	MCF7_Burge_Thompson.2651	0	.	111289070	111289624	0	1	554	0
chr1	111406395	111406775	B_Cells_Pritchard.251353	0	.	111406395	111406775	0	1	380	0
chr1	111453113	111454277	MCF10A_Thompson.1942	0	.	111453113	111454277	0	1	1164	0
chr1	111676240	111679464	B_Cells_Pritchard.251827	0	+	111676240	111679464	0	2	1636,43	0,3181
chr1	111676616	111679947	B_cells_Cheung.15942	0	.	111676616	111679947	0	1	3331	0
chr1	111686145	111687054	B_cells_Cheung.15944	0	.	111686145	111687054	0	1	909	0
chr1	111686168	111687247	B_Cells_Pritchard.251851	0	.	111686168	111687247	0	1	1079	0
chr1	111777191	111777609	prostate_normal.5214	0	.	111777191	111777609	0	1	418	0
chr1	111777202	111780092	BT474_Burge_Thompson.2805	0	.	111777202	111780092	0	1	2890	0
chr1	111777234	111777784	CD4_Plagnol_activated.6205	0	.	111777234	111777784	0	1	550	0
chr1	111777246	111777667	CD4_Snyder.6392	0	.	111777246	111777667	0	1	421	0
chr1	111777259	111777937	brain_AmbionMAQC.3977	0	.	111777259	111777937	0	1	678	0
chr1	111777292	111778766	NEC_from_H9.6792	0	-	111777292	111778766	0	2	363,203	0,1271
chr1	111808057	111810332	B_cells_Cheung.16015	0	.	111808057	111810332	0	1	2275	0
chr1	111808116	111810818	MDAMB468_Thompson.2299	0	.	111808116	111810818	0	1	2702	0
chr1	111808126	111809941	BT20_Thompson.1990	0	.	111808126	111809941	0	1	1815	0
chr1	111808132	111810388	B_Cells_Pritchard.252681	0	-	111808132	111810388	0	1	2256	0
chr1	111808132	111810001	BT474_Burge_Thompson.2809	0	.	111808132	111810001	0	1	1869	0
chr1	111808202	111810561	K562.4310	0	.	111808202	111810561	0	1	2359	0
chr1	111808277	111811113	melanoma_Garraway_short_term_cultures.5832	0	.	111808277	111811113	0	1	2836	0
chr1	111808932	111809993	CD4_Plagnol_resting.6078	0	.	111808932	111809993	0	1	1061	0
chr1	111809022	111810102	brain_AmbionMAQC.3967	0	.	111809022	111810102	0	1	1080	0
chr1	111809030	111810005	liver_polyA+.11990	0	.	111809030	111810005	0	1	975	0
chr1	111809033	111809884	ZR751_Thompson.2134	0	.	111809033	111809884	0	1	851	0
chr1	111809033	111809771	T47D_Burge_Thompson.2481	0	.	111809033	111809771	0	1	738	0
chr1	111809064	111809759	HepG2_Caltech_ENCODE.3250	0	.	111809064	111809759	0	1	695	0
chr1	111809069	111809771	heart_Burge.2555	0	.	111809069	111809771	0	1	702	0
chr1	111809072	111809823	H9_polyA+.4301	0	.	111809072	111809823	0	1	751	0
chr1	111809115	111809747	skeletal_muscle_Burge.2640	0	.	111809115	111809747	0	1	632	0
chr1	111809146	111809690	MDAMB231_Thompson.2064	0	.	111809146	111809690	0	1	544	0
chr1	111809173	111809869	HeLa_polyA+_Chen.3157	0	.	111809173	111809869	0	1	696	0
chr1	111809185	111809739	heart_Raymond.5330	0	.	111809185	111809739	0	1	554	0
chr1	111809185	111809739	skeletal_muscle_Raymond.8339	0	.	111809185	111809739	0	1	554	0
chr1	111809195	111809689	IMR90_UCSD_REMC.4370	0	-	111809195	111809689	0	1	494	0
chr1	111809204	111809739	adipose_Raymond.5879	0	.	111809204	111809739	0	1	535	0
chr1	111809264	111809817	MCF7_Burge_Thompson.2656	0	.	111809264	111809817	0	1	553	0
chr1	111809282	111809676	NEC_from_H9.6811	0	.	111809282	111809676	0	1	394	0
chr1	111809292	111809739	kidney_Raymond.9362	0	.	111809292	111809739	0	1	447	0
chr1	111809317	111809752	A549_Myers.5803	0	.	111809317	111809752	0	1	435	0
chr1	111809317	111809718	lymph_node_Burge.4418	0	.	111809317	111809718	0	1	401	0
chr1	111810860	111814020	K562.4311	0	.	111810860	111814020	0	1	3160	0
chr1	111811385	111816988	melanoma_Garraway_short_term_cultures.5833	0	.	111811385	111816988	0	1	5603	0
chr1	111811587	111815787	B_cells_Cheung.16018	0	.	111811587	111815787	0	1	4200	0
chr1	111811682	111814722	CD4_Plagnol_activated.6219	0	.	111811682	111814722	0	1	3040	0
chr1	111811713	111816141	CD4_Plagnol_resting.6083	0	.	111811713	111816141	0	1	4428	0
chr1	111811729	111812719	brain_AmbionMAQC.3968	0	.	111811729	111812719	0	1	990	0
chr1	111811793	111812871	HepG2_Caltech_ENCODE.3252	0	.	111811793	111812871	0	1	1078	0
chr1	111813073	111815514	brain_AmbionMAQC.3969	0	.	111813073	111815514	0	1	2441	0
chr1	111813834	111816599	H1_polyA+.10522	0	.	111813834	111816599	0	1	2765	0
chr1	111816152	111816978	brain_AmbionMAQC.3970	0	.	111816152	111816978	0	1	826	0
chr1	112334440	112335318	ENST00000428461	0	+	112334440	112335318	0	2	103,606	0,272
chr1	112334648	112340062	MIP101.6152	0	.	112334648	112340062	0	1	5414	0
chr1	112334680	112343007	HIT000093364	0	+	112334680	112343007	0	2	652,2436	0,5891
chr1	112334680	112342987	ENST00000438293	0	+	112334680	112342987	0	2	652,2416	0,5891
chr1	112334711	112335098	colon_Burge.3457	0	.	112334711	112335098	0	1	387	0
chr1	112334721	112335170	testes_Burge.4830	0	.	112334721	112335170	0	1	449	0
chr1	112334818	112335331	liver_polyA+.12152	0	.	112334818	112335331	0	1	513	0
chr1	112336069	112336546	brain_AmbionMAQC.4248	0	.	112336069	112336546	0	1	477	0
chr1	112342058	112342435	MCF7_Burge_Thompson.2699	0	.	112342058	112342435	0	1	377	0
chr1	112345644	112347419	MCF7_Burge_Thompson.2702	0	.	112345644	112347419	0	1	1775	0
chr1	112348056	112348797	MCF7_Burge_Thompson.2704	0	.	112348056	112348797	0	1	741	0
chr1	112348959	112349914	MCF7_Burge_Thompson.2705	0	.	112348959	112349914	0	1	955	0
chr1	112350904	112352530	BT20_Thompson.2005	0	.	112350904	112352530	0	1	1626	0
chr1	112360240	112360818	MCF7_Burge_Thompson.2711	0	.	112360240	112360818	0	1	578	0
chr1	112361367	112363671	BT20_Thompson.2009	0	.	112361367	112363671	0	1	2304	0
chr1	112362262	112364596	MCF7_Burge_Thompson.2713	0	.	112362262	112364596	0	1	2334	0
chr1	112372931	112373611	MCF7_Burge_Thompson.2685	0	.	112372931	112373611	0	1	680	0
chr1	112433487	112436358	prostate_carcinoma.8624	0	.	112433487	112436358	0	1	2871	0
chr1	112436998	112488092	Rinn_00001629	0	-	112436998	112488092	0	2	2706,350	0,50744
chr1	112438089	112439700	prostate_carcinoma.8626	0	.	112438089	112439700	0	1	1611	0
chr1	112573852	112579185	prostate_carcinoma.8632	0	.	112573852	112579185	0	1	5333	0
chr1	112573852	112582531	prostate_carcinoma.8633	0	-	112573852	112582531	0	2	5192,317	0,8362
chr1	112573978	112577407	H1_polyA+.10475	0	.	112573978	112577407	0	1	3429	0
chr1	112574151	112578957	prostate_normal.5278	0	+	112574151	112578957	0	2	1112,292	0,4514
chr1	112574151	112577561	prostate_normal.5277	0	.	112574151	112577561	0	1	3410	0
chr1	112574301	112574975	brain_AmbionMAQC.4019	0	.	112574301	112574975	0	1	674	0
chr1	112574303	112574817	testes_Burge.4832	0	.	112574303	112574817	0	1	514	0
chr1	112574489	112574858	breast_Burge.3480	0	.	112574489	112574858	0	1	369	0
chr1	112575634	112575954	testes_Burge.4834	0	.	112575634	112575954	0	1	320	0
chr1	112577471	112582366	H1_polyA+.10476	0	-	112577471	112582366	0	2	1573,152	0,4743
chr1	112715296	112715772	BT474_Burge_Thompson.2832	0	.	112715296	112715772	0	1	476	0
chr1	112735219	112735868	B_cells_Cheung.16070	0	.	112735219	112735868	0	1	649	0
chr1	112809427	112809871	MDAMB231_Thompson.2093	0	.	112809427	112809871	0	1	444	0
chr1	113062936	113063411	A549_Myers.5847	0	.	113062936	113063411	0	1	475	0
chr1	113085412	113086292	H1_polyA+.10493	0	.	113085412	113086292	0	1	880	0
chr1	113085964	113086900	B_Cells_Pritchard.254987	0	.	113085964	113086900	0	1	936	0
chr1	113086571	113088648	pHIT000071342	0	+	113086571	113088648	0	2	139,224	0,1853
chr1	113105808	113106538	H1_polyA+.10495	0	.	113105808	113106538	0	1	730	0
chr1	113112186	113142873	H1_polyA+.10498	0	+	113112186	113142873	0	2	23,1137	0,29550
chr1	113133898	113136889	H1_polyA+.10506	0	.	113133898	113136889	0	1	2991	0
chr1	113141353	113142873	H1_polyA+.10497	0	.	113141353	113142873	0	1	1520	0
chr1	113141746	113142129	prostate_carcinoma.8771	0	.	113141746	113142129	0	1	383	0
chr1	113152828	113153964	H1_polyA+.10514	0	.	113152828	113153964	0	1	1136	0
chr1	113156888	113157869	H1_polyA+.11381	0	.	113156888	113157869	0	1	981	0
chr1	113160287	113161107	H1_polyA+.11385	0	.	113160287	113161107	0	1	820	0
chr1	113165203	113165565	K562.4291	0	.	113165203	113165565	0	1	362	0
chr1	113165227	113167432	H9_polyA+.4357	0	.	113165227	113167432	0	1	2205	0
chr1	113165683	113166072	H1_rRNA-depleted_UCSD_REMC.8045	0	.	113165683	113166072	0	1	389	0
chr1	113165803	113167250	H1_polyA+.11387	0	.	113165803	113167250	0	1	1447	0
chr1	113166191	113167247	H1_rRNA-depleted_UCSD_REMC.8047	0	.	113166191	113167247	0	1	1056	0
chr1	113170525	113171180	K562.4292	0	.	113170525	113171180	0	1	655	0
chr1	113174518	113177253	H1_polyA+.11392	0	.	113174518	113177253	0	1	2735	0
chr1	113180600	113182591	H1_polyA+.11393	0	.	113180600	113182591	0	1	1991	0
chr1	113195708	113198243	H1_polyA+.11401	0	.	113195708	113198243	0	1	2535	0
chr1	113199083	113200351	H1_polyA+.11402	0	.	113199083	113200351	0	1	1268	0
chr1	113200705	113201264	H1_polyA+.11403	0	.	113200705	113201264	0	1	559	0
chr1	113208867	113209392	H1_polyA+.11409	0	.	113208867	113209392	0	1	525	0
chr1	113210022	113211411	H1_polyA+.11410	0	.	113210022	113211411	0	1	1389	0
chr1	113216472	113216785	H1_polyA+.11618	0	.	113216472	113216785	0	1	313	0
chr1	113219892	113224304	H1_polyA+.11624	0	+	113219892	113224304	0	2	1237,2430	0,1982
chr1	113224268	113225497	REMC_MyoepithelialBreast.8320	0	.	113224268	113225497	0	1	1229	0
chr1	113224296	113225630	REMC_BreastStem.4449	0	.	113224296	113225630	0	1	1334	0
chr1	113225712	113228227	REMC_BreastStem.4450	0	.	113225712	113228227	0	1	2515	0
chr1	113225752	113227502	REMC_MyoepithelialBreast.8321	0	.	113225752	113227502	0	1	1750	0
chr1	113231457	113232357	REMC_BreastStem.4452	0	.	113231457	113232357	0	1	900	0
chr1	113232511	113234087	REMC_MyoepithelialBreast.8322	0	.	113232511	113234087	0	1	1576	0
chr1	113306768	113309301	H1_polyA+.11642	0	.	113306768	113309301	0	1	2533	0
chr1	113308408	113313172	khalil_88	0	.	113308408	113313172	0	2	429,974	0,3790
chr1	113312178	113313279	BT20_Thompson.2055	0	.	113312178	113313279	0	1	1101	0
chr1	113312704	113313225	H1_rRNA-depleted_UCSD_REMC.8058	0	.	113312704	113313225	0	1	521	0
chr1	113313403	113314231	H1_rRNA-depleted_UCSD_REMC.8059	0	.	113313403	113314231	0	1	828	0
chr1	113313432	113314025	H9_polyA+.4373	0	.	113313432	113314025	0	1	593	0
chr1	113313449	113314075	REMC_BreastStem.4457	0	.	113313449	113314075	0	1	626	0
chr1	113313475	113314022	BT20_Thompson.2056	0	.	113313475	113314022	0	1	547	0
chr1	113313501	113314018	MeI_Garraway.1649	0	.	113313501	113314018	0	1	517	0
chr1	113314195	113320042	HeLa_polyA+_Chen.3318	0	.	113314195	113320042	0	1	5847	0
chr1	113314745	113320181	REMC_MyoepithelialBreast.8337	0	.	113314745	113320181	0	1	5436	0
chr1	113316423	113317715	K562.5186	0	.	113316423	113317715	0	1	1292	0
chr1	113316426	113320298	REMC_BreastStem.4459	0	.	113316426	113320298	0	1	3872	0
chr1	113316466	113317591	H9_polyA+.4379	0	.	113316466	113317591	0	1	1125	0
chr1	113316479	113316880	melanoma_Garraway_short_term_cultures.5965	0	.	113316479	113316880	0	1	401	0
chr1	113316481	113316874	CD4_Plagnol_resting.6148	0	.	113316481	113316874	0	1	393	0
chr1	113316964	113317669	CD4_Plagnol_resting.6149	0	.	113316964	113317669	0	1	705	0
chr1	113317008	113317631	BT20_Thompson.2058	0	.	113317008	113317631	0	1	623	0
chr1	113317008	113317694	CD4_Plagnol_activated.6321	0	.	113317008	113317694	0	1	686	0
chr1	113320156	113320802	HeLa_polyA+_Chen.3319	0	.	113320156	113320802	0	1	646	0
chr1	113322058	113323165	HeLa_polyA+_Chen.3321	0	.	113322058	113323165	0	1	1107	0
chr1	113323490	113324313	REMC_LuminalBreast.9024	0	.	113323490	113324313	0	1	823	0
chr1	113326484	113329668	REMC_LuminalBreast.9026	0	.	113326484	113329668	0	1	3184	0
chr1	113328742	113331090	H1_polyA+.11646	0	.	113328742	113331090	0	1	2348	0
chr1	113328814	113330940	REMC_BreastStem.4463	0	.	113328814	113330940	0	1	2126	0
chr1	113329682	113330866	HeLa_polyA+_Chen.3325	0	.	113329682	113330866	0	1	1184	0
chr1	113329763	113331768	REMC_MyoepithelialBreast.8344	0	.	113329763	113331768	0	1	2005	0
chr1	113330135	113330862	melanoma_Garraway_short_term_cultures.5975	0	.	113330135	113330862	0	1	727	0
chr1	113337965	113338753	REMC_MyoepithelialBreast.8347	0	.	113337965	113338753	0	1	788	0
chr1	113337989	113341413	B_cells_Cheung.16345	0	.	113337989	113341413	0	1	3424	0
chr1	113338331	113339985	H1_polyA+.11655	0	.	113338331	113339985	0	1	1654	0
chr1	113339519	113341223	B_Cells_Pritchard.257277	0	+	113339519	113341223	0	1	1704	0
chr1	113340066	113341342	H1_polyA+.11656	0	.	113340066	113341342	0	1	1276	0
chr1	113345671	113349674	H1_polyA+.11657	0	.	113345671	113349674	0	1	4003	0
chr1	113350726	113352778	H1_polyA+.11659	0	.	113350726	113352778	0	1	2052	0
chr1	113351009	113352260	REMC_LuminalBreast.9030	0	.	113351009	113352260	0	1	1251	0
chr1	113351042	113357737	B_Cells_Pritchard.257315	0	+	113351042	113357737	0	6	124,775,166,344,953,1603	0,257,2636,3140,4037,5092
chr1	113351370	113352747	melanoma_Garraway_short_term_cultures.5982	0	.	113351370	113352747	0	1	1377	0
chr1	113352285	113352782	prostate_carcinoma.8828	0	.	113352285	113352782	0	1	497	0
chr1	113359085	113367712	MIP101.6445	0	+	113359085	113367712	0	2	727,183	0,8444
chr1	113359085	113360112	MIP101.6444	0	.	113359085	113360112	0	1	1027	0
chr1	113360288	113360793	H1_polyA+.11663	0	.	113360288	113360793	0	1	505	0
chr1	113360300	113360821	REMC_LuminalBreast.9033	0	.	113360300	113360821	0	1	521	0
chr1	113361062	113362721	REMC_LuminalBreast.9034	0	.	113361062	113362721	0	1	1659	0
chr1	113366768	113368044	B_cells_Cheung.16195	0	.	113366768	113368044	0	1	1276	0
chr1	113366833	113372070	REMC_LuminalBreast.9037	0	.	113366833	113372070	0	1	5237	0
chr1	113368241	113372335	REMC_MyoepithelialBreast.8359	0	.	113368241	113372335	0	1	4094	0
chr1	113374705	113378374	B_cells_Cheung.16203	0	.	113374705	113378374	0	1	3669	0
chr1	113377708	113378218	REMC_MyoepithelialBreast.8361	0	.	113377708	113378218	0	1	510	0
chr1	113383130	113388462	REMC_LuminalBreast.9041	0	.	113383130	113388462	0	1	5332	0
chr1	113383137	113390028	REMC_MyoepithelialBreast.8365	0	.	113383137	113390028	0	1	6891	0
chr1	113383344	113383968	HeLa_polyA+_Chen.3237	0	.	113383344	113383968	0	1	624	0
chr1	113385235	113389880	HIT000045083	0	-	113385235	113389880	0	2	208,2357	0,2288
chr1	113387399	113390163	B_cells_Cheung.16211	0	.	113387399	113390163	0	1	2764	0
chr1	113387686	113388126	HeLa_polyA+_Chen.3241	0	.	113387686	113388126	0	1	440	0
chr1	113391263	113391615	B_cells_Cheung.16214	0	.	113391263	113391615	0	1	352	0
chr1	113397309	113398203	B_cells_Cheung.16220	0	.	113397309	113398203	0	1	894	0
chr1	113402895	113404510	H1_polyA+.11684	0	.	113402895	113404510	0	1	1615	0
chr1	113403042	113404198	REMC_MyoepithelialBreast.8367	0	.	113403042	113404198	0	1	1156	0
chr1	113406632	113407012	B_cells_Cheung.16225	0	.	113406632	113407012	0	1	380	0
chr1	113730851	113731764	REMC_MyoepithelialBreast.8378	0	.	113730851	113731764	0	1	913	0
chr1	114261682	114262952	REMC_MyoepithelialBreast.8498	0	.	114261682	114262952	0	1	1270	0
chr1	114336511	114339260	REMC_BreastStem.4515	0	.	114336511	114339260	0	1	2749	0
chr1	114336574	114338877	REMC_MyoepithelialBreast.8487	0	.	114336574	114338877	0	1	2303	0
chr1	114337724	114338750	H1_polyA+.10626	0	.	114337724	114338750	0	1	1026	0
chr1	114350629	114352185	H1_polyA+.10629	0	.	114350629	114352185	0	1	1556	0
chr1	114352369	114357896	H1_polyA+.10630	0	.	114352369	114357896	0	1	5527	0
chr1	114374356	114375226	H1_polyA+.10635	0	.	114374356	114375226	0	1	870	0
chr1	114376339	114381593	H1_polyA+.10631	0	+	114376339	114381593	0	2	2452,2253	0,3001
chr1	114376475	114378288	H1_rRNA-depleted_UCSD_REMC.8193	0	.	114376475	114378288	0	1	1813	0
chr1	114376512	114381277	H1_polyA+.10632	0	.	114376512	114381277	0	1	4765	0
chr1	114376536	114378934	H9_polyA+.4432	0	.	114376536	114378934	0	1	2398	0
chr1	114376558	114377711	H9_polyA-_Chen.1346	0	.	114376558	114377711	0	1	1153	0
chr1	114378476	114379111	H1_rRNA-depleted_UCSD_REMC.8173	0	.	114378476	114379111	0	1	635	0
chr1	114380802	114381258	H9_polyA+.4436	0	.	114380802	114381258	0	1	456	0
chr1	114397756	114398906	H1_polyA+.10620	0	.	114397756	114398906	0	1	1150	0
chr1	114425007	114425632	H1_polyA+.10622	0	.	114425007	114425632	0	1	625	0
chr1	114427649	114429336	H1_polyA+.10623	0	.	114427649	114429336	0	1	1687	0
chr1	114500267	114501750	prostate_carcinoma.8924	0	.	114500267	114501750	0	1	1483	0
chr1	114501947	114503058	NEC_from_H9.7036	0	.	114501947	114503058	0	1	1111	0
chr1	114562911	114563333	MCF7_Burge_Thompson.2849	0	.	114562911	114563333	0	1	422	0
chr1	114623274	114689965	pHIT000098199	0	-	114623274	114689965	0	3	102,171,102	0,7087,66589
chr1	114690014	114690364	A549_Myers.5948	0	.	114690014	114690364	0	1	350	0
chr1	114709003	114709689	REMC_MyoepithelialBreast.8490	0	.	114709003	114709689	0	1	686	0
chr1	114711972	114712698	B_cells_Cheung.16390	0	.	114711972	114712698	0	1	726	0
chr1	114732126	114733344	B_cells_Cheung.16394	0	.	114732126	114733344	0	1	1218	0
chr1	114732138	114733255	REMC_MyoepithelialBreast.8492	0	.	114732138	114733255	0	1	1117	0
chr1	114733422	114735049	B_cells_Cheung.16395	0	.	114733422	114735049	0	1	1627	0
chr1	114733631	114734547	H1_polyA+.10638	0	.	114733631	114734547	0	1	916	0
chr1	114733714	114735891	melanoma_Garraway_short_term_cultures.6074	0	.	114733714	114735891	0	1	2177	0
chr1	114734060	114734867	REMC_MyoepithelialBreast.8493	0	.	114734060	114734867	0	1	807	0
chr1	115479580	115480111	REMC_LuminalBreast.9209	0	.	115479580	115480111	0	1	531	0
chr1	115611696	115614623	REMC_BreastStem.4557	0	.	115611696	115614623	0	1	2927	0
chr1	116137277	116139452	pHIT000071061	0	-	116137277	116139452	0	2	159,204	0,1971
chr1	116172974	116173927	H1_polyA+.10825	0	.	116172974	116173927	0	1	953	0
chr1	116264910	116268312	Rinn_00001635	0	-	116264910	116268312	0	2	2269,99	0,3303
chr1	116265790	116266945	H1_polyA+.10827	0	.	116265790	116266945	0	1	1155	0
chr1	116496179	116496618	A549_Myers.5994	0	.	116496179	116496618	0	1	439	0
chr1	116498141	116499502	B_Cells_Pritchard.262589	0	.	116498141	116499502	0	1	1361	0
chr1	116507050	116507976	BT20_Thompson.2083	0	.	116507050	116507976	0	1	926	0
chr1	116507121	116507768	melanoma_Garraway_short_term_cultures.6117	0	.	116507121	116507768	0	1	647	0
chr1	116508426	116510385	Rinn_00000282	0	+	116508426	116510385	0	2	61,855	0,1104
chr1	116508427	116510385	ENST00000426515	0	+	116508427	116510385	0	2	60,854	0,1104
chr1	116590933	116591914	B_Cells_Pritchard.262811	0	.	116590933	116591914	0	1	981	0
chr1	116763568	116763911	B_Cells_Pritchard.263225	0	.	116763568	116763911	0	1	343	0
chr1	116763978	116768469	REMC_MyoepithelialBreast.8682	0	.	116763978	116768469	0	1	4491	0
chr1	116764125	116767869	REMC_BreastStem.4630	0	.	116764125	116767869	0	1	3744	0
chr1	116764200	116767568	REMC_LuminalBreast.10541	0	.	116764200	116767568	0	1	3368	0
chr1	116769424	116770329	REMC_MyoepithelialBreast.8685	0	.	116769424	116770329	0	1	905	0
chr1	116770336	116771338	B_Cells_Pritchard.263253	0	.	116770336	116771338	0	1	1002	0
chr1	116773413	116774103	B_cells_Cheung.16609	0	.	116773413	116774103	0	1	690	0
chr1	116776288	116776966	melanoma_Garraway_short_term_cultures.6130	0	.	116776288	116776966	0	1	678	0
chr1	116776365	116778970	REMC_LuminalBreast.9249	0	.	116776365	116778970	0	1	2605	0
chr1	116777104	116777878	B_Cells_Pritchard.263275	0	.	116777104	116777878	0	1	774	0
chr1	116777332	116777850	B_cells_Cheung.16615	0	.	116777332	116777850	0	1	518	0
chr1	116777570	116778532	REMC_MyoepithelialBreast.8686	0	.	116777570	116778532	0	1	962	0
chr1	116780337	116781038	REMC_MyoepithelialBreast.8687	0	.	116780337	116781038	0	1	701	0
chr1	116783533	116791172	B_Cells_Pritchard.263297	0	-	116783533	116791172	0	2	2368,4032	0,3607
chr1	116783829	116788003	B_cells_Cheung.16620	0	.	116783829	116788003	0	1	4174	0
chr1	116784345	116785832	CD4_Plagnol_resting.6326	0	.	116784345	116785832	0	1	1487	0
chr1	116784479	116785267	REMC_BreastStem.4634	0	.	116784479	116785267	0	1	788	0
chr1	116784495	116785268	REMC_MyoepithelialBreast.8688	0	.	116784495	116785268	0	1	773	0
chr1	116788016	116789146	REMC_BreastStem.4636	0	.	116788016	116789146	0	1	1130	0
chr1	116788064	116790080	B_cells_Cheung.16621	0	.	116788064	116790080	0	1	2016	0
chr1	116788470	116789566	REMC_LuminalBreast.9252	0	.	116788470	116789566	0	1	1096	0
chr1	116788739	116790073	CD4_Plagnol_resting.6328	0	.	116788739	116790073	0	1	1334	0
chr1	116797084	116800080	B_Cells_Pritchard.263319	0	-	116797084	116800080	0	1	2996	0
chr1	116797356	116800605	B_cells_Cheung.16629	0	.	116797356	116800605	0	1	3249	0
chr1	116797375	116798350	prostate_carcinoma.9069	0	.	116797375	116798350	0	1	975	0
chr1	116797591	116799337	CD4_Plagnol_resting.6329	0	.	116797591	116799337	0	1	1746	0
chr1	116813887	116823167	B_cells_Cheung.16642	0	.	116813887	116823167	0	1	9280	0
chr1	116815359	116817811	CD4_Plagnol_resting.6334	0	.	116815359	116817811	0	1	2452	0
chr1	116815361	116817734	HepG2_Caltech_ENCODE.3391	0	.	116815361	116817734	0	1	2373	0
chr1	116815478	116856506	B_Cells_Pritchard.263353	0	+	116815478	116856506	0	4	7674,19877,5728,2123	0,8304,28301,38905
chr1	116815494	116817072	prostate_carcinoma.9071	0	.	116815494	116817072	0	1	1578	0
chr1	116817227	116819625	REMC_LuminalBreast.9421	0	.	116817227	116819625	0	1	2398	0
chr1	116817844	116818774	CD4_Plagnol_activated.6479	0	.	116817844	116818774	0	1	930	0
chr1	116817861	116818351	CD4_Plagnol_resting.6333	0	.	116817861	116818351	0	1	490	0
chr1	116817916	116849108	B_Cells_Pritchard.263355	0	-	116817916	116849108	0	3	25,14087,5201	0,11646,25991
chr1	116818276	116819578	HepG2_Caltech_ENCODE.3392	0	.	116818276	116819578	0	1	1302	0
chr1	116818457	116819950	REMC_MyoepithelialBreast.8689	0	.	116818457	116819950	0	1	1493	0
chr1	116818875	116819386	CD4_Plagnol_activated.6480	0	.	116818875	116819386	0	1	511	0
chr1	116827187	116828912	HepG2_Caltech_ENCODE.3396	0	.	116827187	116828912	0	1	1725	0
chr1	116827475	116829172	REMC_LuminalBreast.9426	0	.	116827475	116829172	0	1	1697	0
chr1	116827559	116831011	B_cells_Cheung.16646	0	.	116827559	116831011	0	1	3452	0
chr1	116829387	116849037	REMC_LuminalBreast.9427	0	.	116829387	116849037	0	1	19650	0
chr1	116831014	116833640	REMC_MyoepithelialBreast.8691	0	.	116831014	116833640	0	1	2626	0
chr1	116831237	116849515	B_cells_Cheung.16648	0	.	116831237	116849515	0	1	18278	0
chr1	116831237	116849515	B_cells_Cheung.16647	0	-	116831237	116849515	0	3	7542,8046,391	0,9372,17887
chr1	116831294	116839702	melanoma_Garraway_short_term_cultures.6132	0	.	116831294	116839702	0	1	8408	0
chr1	116831302	116832801	CD4_Plagnol_resting.6337	0	.	116831302	116832801	0	1	1499	0
chr1	116831302	116840338	CD4_Plagnol_activated.6500	0	.	116831302	116840338	0	1	9036	0
chr1	116831481	116832829	HepG2_Caltech_ENCODE.3399	0	.	116831481	116832829	0	1	1348	0
chr1	116831654	116832035	MB435_Burge.3902	0	.	116831654	116832035	0	1	381	0
chr1	116831686	116832245	liver_polyA+.12560	0	.	116831686	116832245	0	1	559	0
chr1	116831769	116832895	K562.4420	0	.	116831769	116832895	0	1	1126	0
chr1	116831869	116832767	H1_polyA+.10840	0	.	116831869	116832767	0	1	898	0
chr1	116831952	116832717	REMC_BreastStem.4637	0	.	116831952	116832717	0	1	765	0
chr1	116832163	116832914	MeWo_Garraway.3357	0	.	116832163	116832914	0	1	751	0
chr1	116832186	116834084	MIP101.6450	0	.	116832186	116834084	0	1	1898	0
chr1	116832749	116835007	HeLa_polyA+_Chen.3330	0	.	116832749	116835007	0	1	2258	0
chr1	116832870	116840342	CD4_Plagnol_resting.6339	0	.	116832870	116840342	0	1	7472	0
chr1	116832941	116835992	HepG2_Caltech_ENCODE.3400	0	.	116832941	116835992	0	1	3051	0
chr1	116832957	116833739	MCF7_Burge_Thompson.2898	0	.	116832957	116833739	0	1	782	0
chr1	116833005	116836117	K562.4421	0	.	116833005	116836117	0	1	3112	0
chr1	116834075	116835718	prostate_normal.5478	0	.	116834075	116835718	0	1	1643	0
chr1	116834897	116835274	liver_polyA+.12563	0	.	116834897	116835274	0	1	377	0
chr1	116836027	116838261	liver_polyA+.12565	0	-	116836027	116838261	0	2	782,1085	0,1149
chr1	116836814	116838224	MCF7_Burge_Thompson.2900	0	.	116836814	116838224	0	1	1410	0
chr1	116836823	116842148	REMC_MyoepithelialBreast.8694	0	.	116836823	116842148	0	1	5325	0
chr1	116836949	116839047	HeLa_polyA+_Chen.3332	0	.	116836949	116839047	0	1	2098	0
chr1	116837054	116838657	REMC_BreastStem.4638	0	.	116837054	116838657	0	1	1603	0
chr1	116837144	116841554	HIT000027794	0	-	116837144	116841554	0	1	4410	0
chr1	116837151	116838401	HIT000089717	0	-	116837151	116838401	0	1	1250	0
chr1	116837167	116843357	HIT000046706	0	-	116837167	116843357	0	2	1884,411	0,5779
chr1	116837167	116843357	ENST00000456414	0	-	116837167	116843357	0	2	1884,411	0,5779
chr1	116837192	116838686	prostate_normal.5479	0	.	116837192	116838686	0	1	1494	0
chr1	116837242	116838269	BT20_Thompson.2086	0	.	116837242	116838269	0	1	1027	0
chr1	116837309	116838238	HepG2_Caltech_ENCODE.3402	0	.	116837309	116838238	0	1	929	0
chr1	116837376	116838270	MCF10A_Thompson.2051	0	.	116837376	116838270	0	1	894	0
chr1	116837390	116840215	K562.4422	0	.	116837390	116840215	0	1	2825	0
chr1	116837838	116838662	MB435_Burge.3910	0	.	116837838	116838662	0	1	824	0
chr1	116837869	116839388	MIP101.6452	0	.	116837869	116839388	0	1	1519	0
chr1	116838339	116839508	HepG2_Caltech_ENCODE.3404	0	.	116838339	116839508	0	1	1169	0
chr1	116838395	116839822	MCF10A_Thompson.2052	0	.	116838395	116839822	0	1	1427	0
chr1	116838801	116839923	prostate_normal.5480	0	.	116838801	116839923	0	1	1122	0
chr1	116839279	116839786	HeLa_polyA+_Chen.3331	0	.	116839279	116839786	0	1	507	0
chr1	116839430	116849037	REMC_LuminalBreast.9428	0	-	116839430	116849037	0	2	31,8086	0,1521
chr1	116839740	116841172	HepG2_Caltech_ENCODE.3405	0	.	116839740	116841172	0	1	1432	0
chr1	116839923	116841356	MCF7_Burge_Thompson.2901	0	.	116839923	116841356	0	1	1433	0
chr1	116840162	116841325	melanoma_Garraway_short_term_cultures.6133	0	.	116840162	116841325	0	1	1163	0
chr1	116840403	116843652	CD4_Plagnol_resting.6338	0	.	116840403	116843652	0	1	3249	0
chr1	116840411	116841864	K562.4423	0	.	116840411	116841864	0	1	1453	0
chr1	116840457	116843648	CD4_Plagnol_activated.6499	0	.	116840457	116843648	0	1	3191	0
chr1	116840634	116841243	prostate_normal.5481	0	.	116840634	116841243	0	1	609	0
chr1	116840733	116841192	A549_Myers.5999	0	.	116840733	116841192	0	1	459	0
chr1	116840777	116842077	MIP101.6453	0	.	116840777	116842077	0	1	1300	0
chr1	116840819	116841183	MB435_Burge.3911	0	.	116840819	116841183	0	1	364	0
chr1	116840921	116842991	REMC_BreastStem.4639	0	.	116840921	116842991	0	1	2070	0
chr1	116841966	116843132	K562.4424	0	.	116841966	116843132	0	1	1166	0
chr1	116855249	116856627	REMC_LuminalBreast.9432	0	.	116855249	116856627	0	1	1378	0
chr1	116855554	116856501	B_cells_Cheung.16655	0	.	116855554	116856501	0	1	947	0
chr1	117138971	117140428	B_cells_Cheung.16713	0	.	117138971	117140428	0	1	1457	0
chr1	117139016	117139927	B_Cells_Pritchard.263915	0	.	117139016	117139927	0	1	911	0
chr1	117139062	117140391	CD4_Plagnol_resting.6395	0	.	117139062	117140391	0	1	1329	0
chr1	117139731	117140675	CD4_Plagnol_activated.6532	0	.	117139731	117140675	0	1	944	0
chr1	117143039	117143622	B_cells_Cheung.16715	0	.	117143039	117143622	0	1	583	0
chr1	117145814	117146284	B_cells_Cheung.16717	0	.	117145814	117146284	0	1	470	0
chr1	117148845	117149247	B_cells_Cheung.16720	0	.	117148845	117149247	0	1	402	0
chr1	117149743	117150630	CD4_Plagnol_activated.6533	0	.	117149743	117150630	0	1	887	0
chr1	117149951	117150578	B_cells_Cheung.16722	0	.	117149951	117150578	0	1	627	0
chr1	117170093	117170472	B_cells_Cheung.16725	0	.	117170093	117170472	0	1	379	0
chr1	117214519	117216154	REMC_MyoepithelialBreast.8728	0	.	117214519	117216154	0	1	1635	0
chr1	117219521	117219981	B_Cells_Pritchard.264161	0	.	117219521	117219981	0	1	460	0
chr1	117221283	117224349	B_cells_Cheung.16727	0	.	117221283	117224349	0	1	3066	0
chr1	117221947	117224305	B_Cells_Pritchard.264171	0	.	117221947	117224305	0	1	2358	0
chr1	117224158	117230119	ZR751_Thompson.2253	0	+	117224158	117230119	0	3	63,117,702	0,2537,5259
chr1	117226713	117229702	T47D_Burge_Thompson.2626	0	+	117226713	117229702	0	2	99,285	0,2704
chr1	117394936	117398827	REMC_LuminalBreast.9654	0	.	117394936	117398827	0	1	3891	0
chr1	117394956	117397163	REMC_MyoepithelialBreast.8770	0	.	117394956	117397163	0	1	2207	0
chr1	117394995	117396935	B_cells_Cheung.17140	0	.	117394995	117396935	0	1	1940	0
chr1	117396421	117396937	B_Cells_Pritchard.264635	0	-	117396421	117396937	0	1	516	0
chr1	117396531	117397991	MIP101.6514	0	.	117396531	117397991	0	1	1460	0
chr1	117397483	117398781	REMC_MyoepithelialBreast.8771	0	.	117397483	117398781	0	1	1298	0
chr1	117398429	117399321	B_cells_Cheung.17143	0	.	117398429	117399321	0	1	892	0
chr1	117452345	117452866	prostate_normal.5525	0	.	117452345	117452866	0	1	521	0
chr1	117583938	117585527	H1_polyA+.10905	0	.	117583938	117585527	0	1	1589	0
chr1	117618822	117620527	H1_polyA+.10907	0	.	117618822	117620527	0	1	1705	0
chr1	117624612	117625778	H1_polyA+.10908	0	.	117624612	117625778	0	1	1166	0
chr1	117880124	117880527	B_cells_Cheung.16821	0	.	117880124	117880527	0	1	403	0
chr1	117883308	117883974	B_Cells_Pritchard.265809	0	.	117883308	117883974	0	1	666	0
chr1	117948142	117949915	Rinn_00000616	0	-	117948142	117949915	0	3	402,149,215	0,790,1558
chr1	117977839	117980267	REMC_MyoepithelialBreast.8846	0	.	117977839	117980267	0	1	2428	0
chr1	117993375	117993984	B_Cells_Pritchard.266139	0	.	117993375	117993984	0	1	609	0
chr1	118002453	118004415	REMC_MyoepithelialBreast.8853	0	.	118002453	118004415	0	1	1962	0
chr1	118004680	118005718	REMC_MyoepithelialBreast.8854	0	.	118004680	118005718	0	1	1038	0
chr1	118005495	118006186	CD4_Snyder.6822	0	.	118005495	118006186	0	1	691	0
chr1	118022060	118022638	B_cells_Cheung.16833	0	.	118022060	118022638	0	1	578	0
chr1	118022222	118022578	B_Cells_Pritchard.266263	0	.	118022222	118022578	0	1	356	0
chr1	118028880	118031925	HIT000056816	0	-	118028880	118031925	0	1	3045	0
chr1	118159576	118165213	HIT000020325	0	-	118159576	118165213	0	3	1363,615,269	0,1849,5368
chr1	118159946	118160921	HepG2_Caltech_ENCODE.3449	0	.	118159946	118160921	0	1	975	0
chr1	118176182	118179408	H1_polyA+.10921	0	.	118176182	118179408	0	1	3226	0
chr1	118176184	118180149	REMC_BreastStem.4762	0	.	118176184	118180149	0	1	3965	0
chr1	118183860	118188094	HeLa_polyA+_Chen.3380	0	.	118183860	118188094	0	1	4234	0
chr1	118183864	118188319	melanoma_Garraway_short_term_cultures.6217	0	.	118183864	118188319	0	1	4455	0
chr1	118183868	118203335	H1_polyA+.10923	0	-	118183868	118203335	0	2	14416,4995	0,14472
chr1	118187805	118188501	MeI_Garraway.1727	0	.	118187805	118188501	0	1	696	0
chr1	118199951	118200631	MDAMB468_Thompson.2455	0	.	118199951	118200631	0	1	680	0
chr1	118203436	118206229	B_cells_Cheung.16857	0	.	118203436	118206229	0	1	2793	0
chr1	118203485	118206154	HeLa_polyA+_Chen.3394	0	.	118203485	118206154	0	1	2669	0
chr1	118203567	118206575	melanoma_Garraway_short_term_cultures.6225	0	.	118203567	118206575	0	1	3008	0
chr1	119074324	119075595	BT20_Thompson.2139	0	.	119074324	119075595	0	1	1271	0
chr1	119075907	119079416	BT20_Thompson.2140	0	.	119075907	119079416	0	1	3509	0
chr1	119213100	119214420	REMC_BreastStem.4746	0	.	119213100	119214420	0	1	1320	0
chr1	119344234	119345116	B_Cells_Pritchard.268757	0	.	119344234	119345116	0	1	882	0
chr1	119344683	119345037	B_cells_Cheung.16916	0	.	119344683	119345037	0	1	354	0
chr1	119347324	119360313	REMC_MyoepithelialBreast.8864	0	.	119347324	119360313	0	1	12989	0
chr1	119349446	119351172	REMC_LuminalBreast.9510	0	.	119349446	119351172	0	1	1726	0
chr1	119349673	119351916	REMC_BreastStem.4899	0	.	119349673	119351916	0	1	2243	0
chr1	119349832	119350539	prostate_carcinoma.9177	0	.	119349832	119350539	0	1	707	0
chr1	119351232	119352139	REMC_LuminalBreast.9511	0	.	119351232	119352139	0	1	907	0
chr1	119351599	119352847	B_Cells_Pritchard.268787	0	.	119351599	119352847	0	1	1248	0
chr1	119352308	119353584	REMC_BreastStem.4900	0	.	119352308	119353584	0	1	1276	0
chr1	119360558	119365348	REMC_BreastStem.4903	0	.	119360558	119365348	0	1	4790	0
chr1	119360578	119365351	REMC_MyoepithelialBreast.8865	0	.	119360578	119365351	0	1	4773	0
chr1	119360610	119364796	prostate_carcinoma.9183	0	.	119360610	119364796	0	1	4186	0
chr1	119360613	119364799	HepG2_Caltech_ENCODE.3468	0	.	119360613	119364799	0	1	4186	0
chr1	119360613	119364842	H1_polyA+.10951	0	.	119360613	119364842	0	1	4229	0
chr1	119360614	119364814	B_Cells_Pritchard.268807	0	.	119360614	119364814	0	1	4200	0
chr1	119360661	119363499	MIP101.6527	0	.	119360661	119363499	0	1	2838	0
chr1	119362193	119364810	B_cells_Cheung.16922	0	.	119362193	119364810	0	1	2617	0
chr1	119363064	119363534	prostate_normal.5564	0	.	119363064	119363534	0	1	470	0
chr1	119488472	119489468	HeLa_polyA+_Chen.3469	0	.	119488472	119489468	0	1	996	0
chr1	119488897	119489602	CD4_Plagnol_activated.6651	0	.	119488897	119489602	0	1	705	0
chr1	119488919	119489733	CD4_Plagnol_resting.6491	0	.	119488919	119489733	0	1	814	0
chr1	119489076	119495121	melanoma_Garraway_short_term_cultures.6243	0	+	119489076	119495121	0	3	1906,146,411	0,1993,5634
chr1	119489078	119491798	prostate_carcinoma.9195	0	.	119489078	119491798	0	1	2720	0
chr1	119489086	119489651	CD4_Snyder.6872	0	.	119489086	119489651	0	1	565	0
chr1	119490446	119495124	MDAMB468_Thompson.2476	0	+	119490446	119495124	0	3	536,117,414	0,652,4264
chr1	119491066	119495076	MCF10A_Thompson.2102	0	+	119491066	119495076	0	2	149,366	0,3644
chr1	119494706	119495078	brain_AmbionMAQC.4257	0	.	119494706	119495078	0	1	372	0
chr1	119494707	119495076	T47D_Burge_Thompson.2671	0	.	119494707	119495076	0	1	369	0
chr1	119500151	119500539	REMC_LuminalBreast.9545	0	.	119500151	119500539	0	1	388	0
chr1	119501000	119501410	H1_polyA+.10967	0	.	119501000	119501410	0	1	410	0
chr1	119501016	119501420	H9_polyA+.4575	0	.	119501016	119501420	0	1	404	0
chr1	119506221	119509180	REMC_LuminalBreast.9547	0	.	119506221	119509180	0	1	2959	0
chr1	119506541	119508838	REMC_BreastStem.4926	0	.	119506541	119508838	0	1	2297	0
chr1	119508056	119508563	B_cells_Cheung.16967	0	.	119508056	119508563	0	1	507	0
chr1	119508664	119512632	REMC_MyoepithelialBreast.8900	0	.	119508664	119512632	0	1	3968	0
chr1	119509299	119513475	REMC_LuminalBreast.9548	0	.	119509299	119513475	0	1	4176	0
chr1	119510429	119513093	HeLa_polyA+_Chen.3480	0	.	119510429	119513093	0	1	2664	0
chr1	119512001	119512591	H1_polyA+.10971	0	.	119512001	119512591	0	1	590	0
chr1	119512089	119512593	REMC_BreastStem.4928	0	.	119512089	119512593	0	1	504	0
chr1	119513690	119515578	REMC_MyoepithelialBreast.8902	0	.	119513690	119515578	0	1	1888	0
chr1	119513697	119514338	REMC_LuminalBreast.9549	0	.	119513697	119514338	0	1	641	0
chr1	119513858	119514318	HeLa_polyA+_Chen.3481	0	.	119513858	119514318	0	1	460	0
chr1	119514483	119515555	REMC_BreastStem.4930	0	.	119514483	119515555	0	1	1072	0
chr1	119514484	119515969	REMC_LuminalBreast.9550	0	.	119514484	119515969	0	1	1485	0
chr1	119514604	119516002	HeLa_polyA+_Chen.3482	0	.	119514604	119516002	0	1	1398	0
chr1	119514616	119515288	H1_polyA+.10973	0	.	119514616	119515288	0	1	672	0
chr1	119515700	119517294	REMC_MyoepithelialBreast.8903	0	.	119515700	119517294	0	1	1594	0
chr1	119516095	119517059	REMC_LuminalBreast.9551	0	.	119516095	119517059	0	1	964	0
chr1	119516332	119517510	HeLa_polyA+_Chen.3483	0	.	119516332	119517510	0	1	1178	0
chr1	119517722	119518896	REMC_LuminalBreast.9552	0	.	119517722	119518896	0	1	1174	0
chr1	119520597	119522242	REMC_LuminalBreast.9554	0	.	119520597	119522242	0	1	1645	0
chr1	119520855	119522237	H1_polyA+.10976	0	.	119520855	119522237	0	1	1382	0
chr1	119521294	119521642	HeLa_polyA+_Chen.3485	0	.	119521294	119521642	0	1	348	0
chr1	119521759	119522212	REMC_MyoepithelialBreast.8906	0	.	119521759	119522212	0	1	453	0
chr1	119522401	119523652	REMC_LuminalBreast.9555	0	.	119522401	119523652	0	1	1251	0
chr1	119522434	119523265	REMC_MyoepithelialBreast.8907	0	.	119522434	119523265	0	1	831	0
chr1	119522526	119523632	H1_polyA+.10977	0	.	119522526	119523632	0	1	1106	0
chr1	119522535	119523960	REMC_BreastStem.4932	0	.	119522535	119523960	0	1	1425	0
chr1	119522725	119523618	HepG2_Caltech_ENCODE.3477	0	.	119522725	119523618	0	1	893	0
chr1	119523046	119523598	BT20_Thompson.2154	0	.	119523046	119523598	0	1	552	0
chr1	119523049	119523605	MDAMB231_Thompson.2220	0	.	119523049	119523605	0	1	556	0
chr1	119523706	119531712	REMC_LuminalBreast.9556	0	.	119523706	119531712	0	1	8006	0
chr1	119524091	119528830	REMC_MyoepithelialBreast.8909	0	.	119524091	119528830	0	1	4739	0
chr1	119524437	119525774	B_cells_Cheung.16983	0	.	119524437	119525774	0	1	1337	0
chr1	119524483	119525705	MDAMB231_Thompson.2221	0	.	119524483	119525705	0	1	1222	0
chr1	119524487	119525691	MCF7_Burge_Thompson.2953	0	.	119524487	119525691	0	1	1204	0
chr1	119524487	119525704	B_Cells_Pritchard.269243	0	.	119524487	119525704	0	1	1217	0
chr1	119524515	119528425	HepG2_Caltech_ENCODE.3479	0	.	119524515	119528425	0	1	3910	0
chr1	119524770	119525450	HeLa_polyA-_Chen.1710	0	.	119524770	119525450	0	1	680	0
chr1	119531962	119533442	REMC_BreastStem.4935	0	.	119531962	119533442	0	1	1480	0
chr1	119532126	119535455	H1_polyA+.10982	0	.	119532126	119535455	0	1	3329	0
chr1	119532381	119533487	B_cells_Cheung.16993	0	.	119532381	119533487	0	1	1106	0
chr1	119532901	119537706	REMC_LuminalBreast.9558	0	.	119532901	119537706	0	1	4805	0
chr1	119533558	119536266	REMC_MyoepithelialBreast.8913	0	.	119533558	119536266	0	1	2708	0
chr1	119533784	119534558	B_Cells_Pritchard.269263	0	.	119533784	119534558	0	1	774	0
chr1	119560892	119562662	REMC_MyoepithelialBreast.8927	0	.	119560892	119562662	0	1	1770	0
chr1	119560944	119562730	HeLa_polyA+_Chen.3428	0	.	119560944	119562730	0	1	1786	0
chr1	119562165	119563272	REMC_LuminalBreast.9570	0	.	119562165	119563272	0	1	1107	0
chr1	119562215	119562619	B_cells_Cheung.17017	0	.	119562215	119562619	0	1	404	0
chr1	119566846	119569740	REMC_LuminalBreast.9573	0	.	119566846	119569740	0	1	2894	0
chr1	119567930	119569956	REMC_MyoepithelialBreast.8930	0	.	119567930	119569956	0	1	2026	0
chr1	119568093	119569107	HeLa_polyA+_Chen.3434	0	.	119568093	119569107	0	1	1014	0
chr1	119569883	119571882	REMC_LuminalBreast.9574	0	.	119569883	119571882	0	1	1999	0
chr1	119570232	119572219	REMC_MyoepithelialBreast.8931	0	.	119570232	119572219	0	1	1987	0
chr1	119570550	119572793	HeLa_polyA+_Chen.3436	0	.	119570550	119572793	0	1	2243	0
chr1	119573117	119578679	B_cells_Cheung.17025	0	.	119573117	119578679	0	1	5562	0
chr1	119573160	119575232	HeLa_polyA+_Chen.3437	0	.	119573160	119575232	0	1	2072	0
chr1	119573247	119573681	REMC_MyoepithelialBreast.8932	0	.	119573247	119573681	0	1	434	0
chr1	119578741	119579592	B_cells_Cheung.17026	0	.	119578741	119579592	0	1	851	0
chr1	119578760	119581158	REMC_LuminalBreast.9577	0	.	119578760	119581158	0	1	2398	0
chr1	119581506	119582202	B_cells_Cheung.17028	0	.	119581506	119582202	0	1	696	0
chr1	119586277	119586725	B_Cells_Pritchard.269513	0	.	119586277	119586725	0	1	448	0
chr1	119587213	119597873	B_Cells_Pritchard.269525	0	-	119587213	119597873	0	8	150,937,635,434,139,2213,95,1255	0,2454,3391,4078,4520,4765,6994,9405
chr1	119587625	119591218	B_cells_Cheung.17035	0	.	119587625	119591218	0	1	3593	0
chr1	119588198	119589514	MIP101.6553	0	.	119588198	119589514	0	1	1316	0
chr1	119588220	119591343	HeLa_polyA+_Chen.3447	0	.	119588220	119591343	0	1	3123	0
chr1	119588269	119589210	REMC_BreastStem.4942	0	.	119588269	119589210	0	1	941	0
chr1	119588305	119589313	REMC_MyoepithelialBreast.8939	0	.	119588305	119589313	0	1	1008	0
chr1	119588327	119591104	REMC_LuminalBreast.9584	0	.	119588327	119591104	0	1	2777	0
chr1	119588337	119591852	H1_polyA+.10999	0	.	119588337	119591852	0	1	3515	0
chr1	119589628	119590411	REMC_BreastStem.4943	0	.	119589628	119590411	0	1	783	0
chr1	119589667	119597873	B_Cells_Pritchard.269523	0	+	119589667	119597873	0	3	2205,2298,1993	0,2311,6213
chr1	119589770	119596785	MIP101.6554	0	-	119589770	119596785	0	3	4441,324,210	0,5593,6805
chr1	119589949	119591259	HepG2_Caltech_ENCODE.3482	0	.	119589949	119591259	0	1	1310	0
chr1	119590648	119591224	HeLa_polyA-_Chen.1726	0	.	119590648	119591224	0	1	576	0
chr1	119590731	119591224	REMC_MyoepithelialBreast.8941	0	.	119590731	119591224	0	1	493	0
chr1	119595318	119598172	HeLa_polyA+_Chen.3451	0	.	119595318	119598172	0	1	2854	0
chr1	119595560	119599140	H1_polyA+.11002	0	.	119595560	119599140	0	1	3580	0
chr1	119595601	119598813	HepG2_Caltech_ENCODE.3485	0	.	119595601	119598813	0	1	3212	0
chr1	119595745	119597232	B_cells_Cheung.17039	0	.	119595745	119597232	0	1	1487	0
chr1	119595899	119599231	prostate_carcinoma.9226	0	.	119595899	119599231	0	1	3332	0
chr1	119595904	119597226	MIP101.6555	0	.	119595904	119597226	0	1	1322	0
chr1	119595910	119598154	prostate_normal.5578	0	.	119595910	119598154	0	1	2244	0
chr1	119599223	119599815	B_Cells_Pritchard.269551	0	.	119599223	119599815	0	1	592	0
chr1	119600416	119600862	B_cells_Cheung.17043	0	.	119600416	119600862	0	1	446	0
chr1	119604370	119605145	MeI_Garraway.1744	0	.	119604370	119605145	0	1	775	0
chr1	119607245	119608037	REMC_LuminalBreast.9591	0	.	119607245	119608037	0	1	792	0
chr1	119612262	119612869	B_cells_Cheung.17056	0	.	119612262	119612869	0	1	607	0
chr1	119629334	119632118	REMC_MyoepithelialBreast.8954	0	.	119629334	119632118	0	1	2784	0
chr1	119634394	119637263	REMC_LuminalBreast.9595	0	.	119634394	119637263	0	1	2869	0
chr1	119635671	119636572	B_cells_Cheung.17069	0	.	119635671	119636572	0	1	901	0
chr1	119635726	119636445	kidney_Gilad.8312	0	.	119635726	119636445	0	1	719	0
chr1	119635726	119636844	liver_polyA+.12761	0	.	119635726	119636844	0	1	1118	0
chr1	119635766	119636502	B_Cells_Pritchard.269729	0	.	119635766	119636502	0	1	736	0
chr1	119637275	119638316	B_Cells_Pritchard.269735	0	.	119637275	119638316	0	1	1041	0
chr1	119637303	119638254	prostate_carcinoma.9232	0	.	119637303	119638254	0	1	951	0
chr1	119637648	119638319	liver_polyA+.12763	0	.	119637648	119638319	0	1	671	0
chr1	119637704	119638304	B_cells_Cheung.17072	0	.	119637704	119638304	0	1	600	0
chr1	119638443	119638969	B_cells_Cheung.17073	0	.	119638443	119638969	0	1	526	0
chr1	119640525	119641160	REMC_MyoepithelialBreast.8957	0	.	119640525	119641160	0	1	635	0
chr1	119649745	119650295	B_cells_Cheung.17083	0	.	119649745	119650295	0	1	550	0
chr1	119654408	119655106	liver_polyA+.12777	0	.	119654408	119655106	0	1	698	0
chr1	119660614	119663360	B_cells_Cheung.17090	0	-	119660614	119663360	0	2	1459,944	0,1802
chr1	119660665	119664223	B_Cells_Pritchard.269867	0	-	119660665	119664223	0	2	1433,1807	0,1751
chr1	119671866	119672263	H9_polyA+.4589	0	.	119671866	119672263	0	1	397	0
chr1	119676755	119677180	B_Cells_Pritchard.269989	0	.	119676755	119677180	0	1	425	0
chr1	119955437	119956417	MeI_Garraway.1762	0	.	119955437	119956417	0	1	980	0
chr1	119955470	119956421	B_Cells_Pritchard.270493	0	.	119955470	119956421	0	1	951	0
chr1	119958159	119958501	IMR90_UCSD_REMC.4651	0	+	119958159	119958501	0	1	342	0
chr1	119958166	119958479	kidney_Raymond.10088	0	.	119958166	119958479	0	1	313	0
chr1	120203865	120206548	pHIT000002049	0	-	120203865	120206548	0	3	95,142,156	0,2290,2527
chr1	120247223	120250790	REMC_LuminalBreast.9612	0	.	120247223	120250790	0	1	3567	0
chr1	120249510	120251055	REMC_BreastStem.5086	0	.	120249510	120251055	0	1	1545	0
chr1	120249967	120251927	REMC_MyoepithelialBreast.9484	0	.	120249967	120251927	0	1	1960	0
chr1	120709246	120727142	K562.4550	0	-	120709246	120727142	0	2	211,503	0,17393
chr1	120834122	120834918	K562.4553	0	.	120834122	120834918	0	1	796	0
chr1	120834150	120834731	REMC_LuminalBreast.9727	0	.	120834150	120834731	0	1	581	0
chr1	120834553	120834945	HepG2_Caltech_ENCODE.3521	0	.	120834553	120834945	0	1	392	0
chr1	120834575	120834927	melanoma_Garraway_short_term_cultures.6320	0	.	120834575	120834927	0	1	352	0
chr1	120840135	120906584	HIT000095161	0	+	120840135	120906584	0	2	552,3189	0,63260
chr1	120840135	120906506	Rinn_00000289	0	+	120840135	120906506	0	2	552,3112	0,63259
chr1	120840136	120906506	ENST00000417218	0	+	120840136	120906506	0	2	551,3111	0,63259
chr1	120843612	120844577	REMC_LuminalBreast.9729	0	.	120843612	120844577	0	1	965	0
chr1	120859361	120859677	brain_AmbionMAQC.4292	0	.	120859361	120859677	0	1	316	0
chr1	120937562	120937920	HepG2_Caltech_ENCODE.3524	0	.	120937562	120937920	0	1	358	0
chr1	121033226	121036355	H1_polyA+.11096	0	.	121033226	121036355	0	1	3129	0
chr1	121047116	121047846	H1_polyA+.11101	0	.	121047116	121047846	0	1	730	0
chr1	121180137	121186957	A549_Myers.6127	0	-	121180137	121186957	0	4	42,45,160,123	0,5528,6297,6697
chr1	141477180	141478049	BT474_Burge_Thompson.2988	0	.	141477180	141478049	0	1	869	0
chr1	141479049	141479668	BT474_Burge_Thompson.2989	0	.	141479049	141479668	0	1	619	0
chr1	141479702	141480645	T47D_Burge_Thompson.2687	0	.	141479702	141480645	0	1	943	0
chr1	141479772	141481214	BT474_Burge_Thompson.2990	0	.	141479772	141481214	0	1	1442	0
chr1	141479827	141480179	ZR751_Thompson.2315	0	.	141479827	141480179	0	1	352	0
chr1	141480311	141481257	CD4_Snyder.6915	0	.	141480311	141481257	0	1	946	0
chr1	141575731	141576049	HepG2_Caltech_ENCODE.3541	0	.	141575731	141576049	0	1	318	0
chr1	141593854	141594519	K562.4561	0	.	141593854	141594519	0	1	665	0
chr1	141728381	141729687	K562.4578	0	.	141728381	141729687	0	1	1306	0
chr1	141795172	141798730	K562.4577	0	.	141795172	141798730	0	1	3558	0
chr1	141805479	141807087	K562.4607	0	.	141805479	141807087	0	1	1608	0
chr1	141812609	141812964	B_Cells_Pritchard.272283	0	.	141812609	141812964	0	1	355	0
chr1	141814733	141815410	K562.4613	0	.	141814733	141815410	0	1	677	0
chr1	141815142	141815682	B_Cells_Pritchard.272293	0	.	141815142	141815682	0	1	540	0
chr1	141815159	141815635	B_cells_Cheung.17210	0	.	141815159	141815635	0	1	476	0
chr1	141831755	141832529	B_Cells_Pritchard.272349	0	-	141831755	141832529	0	2	174,307	0,467
chr1	141832046	141832529	B_cells_Cheung.17214	0	.	141832046	141832529	0	1	483	0
chr1	141832087	141832529	melanoma_Garraway_short_term_cultures.6342	0	.	141832087	141832529	0	1	442	0
chr1	141832122	141832521	HepG2_Caltech_ENCODE.3574	0	.	141832122	141832521	0	1	399	0
chr1	141832152	141832509	brain_AmbionMAQC.4296	0	.	141832152	141832509	0	1	357	0
chr1	141832223	141832529	BT20_Thompson.2188	0	.	141832223	141832529	0	1	306	0
chr1	141960435	142008325	HIT000013010	0	+	141960435	142008325	0	4	207,599,187,1635	0,42970,44667,46255
chr1	141960502	142008340	HIT000264064	0	+	141960502	142008340	0	3	140,1754,1833	0,42903,46005
chr1	141960583	141999600	ENST00000454861	0	+	141960583	141999600	0	3	59,203,968	0,37404,38049
chr1	141982185	141982850	K562.4637	0	.	141982185	141982850	0	1	665	0
chr1	141984529	141984893	B_cells_Cheung.17220	0	.	141984529	141984893	0	1	364	0
chr1	142021344	142035866	K562.4633	0	-	142021344	142035866	0	3	5878,3464,222	0,6202,14300
chr1	142028284	142038326	ENST00000413897	0	-	142028284	142038326	0	7	172,120,54,46,221,214,282	0,1747,2672,3893,7360,8918,9760
chr1	142030317	142038326	ENST00000447389	0	-	142030317	142038326	0	4	693,221,214,282	0,5327,6885,7727
chr1	142030956	142052593	ENST00000412204	0	-	142030956	142052593	0	6	54,162,214,282,150,1641	0,4747,6246,7088,18293,19996
chr1	142064853	142081952	ENST00000429121	0	-	142064853	142081952	0	8	73,29,82,196,70,31,36,141	0,164,2983,4550,7011,9760,14349,16958
chr1	142117239	142118571	B_Cells_Pritchard.272675	0	-	142117239	142118571	0	2	780,96	0,1236
chr1	142118672	142119151	B_Cells_Pritchard.272673	0	.	142118672	142119151	0	1	479	0
chr1	142118821	142119954	B_cells_Cheung.17242	0	.	142118821	142119954	0	1	1133	0
chr1	142118933	142119392	T47D_Burge_Thompson.2692	0	.	142118933	142119392	0	1	459	0
chr1	142119445	142119928	K562.4624	0	.	142119445	142119928	0	1	483	0
chr1	142120108	142120816	K562.4626	0	.	142120108	142120816	0	1	708	0
chr1	142120108	142123437	K562.4625	0	-	142120108	142123437	0	2	682,532	0,2797
chr1	142120194	142120581	melanoma_Garraway_short_term_cultures.6354	0	.	142120194	142120581	0	1	387	0
chr1	142120997	142121310	K562.4628	0	.	142120997	142121310	0	1	313	0
chr1	142121648	142122182	HepG2_Caltech_ENCODE.3601	0	.	142121648	142122182	0	1	534	0
chr1	142121708	142122107	REMC_LuminalBreast.9738	0	.	142121708	142122107	0	1	399	0
chr1	142121810	142122153	K562.4630	0	.	142121810	142122153	0	1	343	0
chr1	142121814	142122128	B_cells_Cheung.17245	0	.	142121814	142122128	0	1	314	0
chr1	142124673	142125044	K562.4631	0	.	142124673	142125044	0	1	371	0
chr1	142189492	142218222	ENST00000430699	0	+	142189492	142218222	0	11	141,36,31,70,196,82,29,73,71,164,50	0,2703,7292,10003,12338,14007,16879,16999,23025,27140,28680
chr1	142196784	142221426	ENST00000431621	0	+	142196784	142221426	0	9	31,70,85,29,73,71,164,180,1906	0,2711,6712,9587,9707,15733,19848,21388,22736
chr1	142218803	142240412	ENST00000428624	0	+	142218803	142240412	0	6	1633,150,282,214,162,54	0,3183,14287,15162,16710,21555
chr1	142233048	142233627	ENST00000412492	0	+	142233048	142233627	0	2	324,48	0,531
chr1	142233090	142241336	ENST00000448665	0	+	142233090	142241336	0	4	282,46,54,119	0,6057,7268,8127
chr1	142233090	142241051	ENST00000458155	0	+	142233090	142241051	0	4	282,214,221,693	0,875,2423,7268
chr1	142233090	142243056	ENST00000448844	0	+	142233090	142243056	0	7	282,214,221,46,54,120,172	0,875,2423,6057,7268,8127,9794
chr1	142289396	142289729	REMC_MyoepithelialBreast.9040	0	.	142289396	142289729	0	1	333	0
chr1	142298787	142299676	REMC_LuminalBreast.9741	0	.	142298787	142299676	0	1	889	0
chr1	142299230	142299680	HepG2_Caltech_ENCODE.3612	0	.	142299230	142299680	0	1	450	0
chr1	142299254	142299678	REMC_MyoepithelialBreast.9042	0	.	142299254	142299678	0	1	424	0
chr1	142299316	142299643	B_Cells_Pritchard.272833	0	-	142299316	142299643	0	1	327	0
chr1	142534772	142535722	B_Cells_Pritchard.273003	0	+	142534772	142535722	0	1	950	0
chr1	142535147	142535715	HepG2_Caltech_ENCODE.3615	0	-	142535147	142535715	0	2	188,266	0,302
chr1	143051954	143052853	HIT000393272	0	+	143051954	143052853	0	3	160,256,172	0,191,727
chr1	143225886	143232415	XR_078229	0	+	143225886	143232415	0	1	6529	0
chr1	143231383	143231875	pHIT000002058	0	+	143231383	143231875	0	1	492	0
chr1	143231506	143232676	K562.4697	0	.	143231506	143232676	0	1	1170	0
chr1	143232171	143232629	REMC_LuminalBreast.9754	0	.	143232171	143232629	0	1	458	0
chr1	143232190	143232603	REMC_MyoepithelialBreast.9048	0	.	143232190	143232603	0	1	413	0
chr1	143232190	143232567	H1_polyA+.11113	0	.	143232190	143232567	0	1	377	0
chr1	143232202	143232628	CD4_Plagnol_activated.6696	0	.	143232202	143232628	0	1	426	0
chr1	143232315	143239780	CD4_Plagnol_resting.6543	0	-	143232315	143239780	0	2	318,361	0,7104
chr1	143232316	143232634	brain_AmbionMAQC.4304	0	.	143232316	143232634	0	1	318	0
chr1	143238919	143240713	REMC_LuminalBreast.9755	0	.	143238919	143240713	0	1	1794	0
chr1	143246179	143246764	REMC_MyoepithelialBreast.9052	0	.	143246179	143246764	0	1	585	0
chr1	143246227	143246769	REMC_LuminalBreast.9757	0	.	143246227	143246769	0	1	542	0
chr1	143304978	143305539	MCF7_Burge_Thompson.2996	0	.	143304978	143305539	0	1	561	0
chr1	143305033	143306176	HeLa_polyA+_Chen.3504	0	.	143305033	143306176	0	1	1143	0
chr1	143305044	143306159	B_cells_Cheung.17298	0	.	143305044	143306159	0	1	1115	0
chr1	143305076	143317058	ENST00000447534	0	+	143305076	143317058	0	4	217,269,1898,260	0,4792,5883,11722
chr1	143305164	143314550	ENST00000428365	0	+	143305164	143314550	0	5	158,95,118,269,63	0,581,2027,4704,9323
chr1	143305401	143317248	ENST00000419820	0	+	143305401	143317248	0	4	439,269,1898,450	0,4467,5558,11397
chr1	143305452	143306182	HepG2_Caltech_ENCODE.3622	0	.	143305452	143306182	0	1	730	0
chr1	143305456	143305801	CD4_Plagnol_activated.6703	0	.	143305456	143305801	0	1	345	0
chr1	143305456	143306142	BT20_Thompson.2195	0	.	143305456	143306142	0	1	686	0
chr1	143305465	143305800	MIP101.6616	0	.	143305465	143305800	0	1	335	0
chr1	143307738	143315671	HIT000265027	0	+	143307738	143315671	0	3	92,269,1184	0,2130,6749
chr1	143310007	143318904	ENST00000437451	0	+	143310007	143318904	0	3	130,142,453	0,7718,8444
chr1	143321139	143321575	B_cells_Cheung.17307	0	.	143321139	143321575	0	1	436	0
chr1	144092374	144093985	H1_polyA+.11213	0	.	144092374	144093985	0	1	1611	0
chr1	144093386	144093917	REMC_LuminalBreast.9952	0	.	144093386	144093917	0	1	531	0
chr1	144093556	144093860	melanoma_Garraway_short_term_cultures.6445	0	.	144093556	144093860	0	1	304	0
chr1	144258351	144259191	REMC_LuminalBreast.9973	0	.	144258351	144259191	0	1	840	0
chr1	144404115	144406846	HIT000021506	0	+	144404115	144406846	0	1	2731	0
chr1	144428969	144431743	REMC_MyoepithelialBreast.9222	0	.	144428969	144431743	0	1	2774	0
chr1	144429368	144430024	B_Cells_Pritchard.274863	0	.	144429368	144430024	0	1	656	0
chr1	144674800	144677010	HIT000249642_03	0	+	144674800	144677010	0	1	2210	0
chr1	145079035	145080026	REMC_MyoepithelialBreast.9255	0	.	145079035	145080026	0	1	991	0
chr1	145079608	145080479	B_cells_Cheung.17581	0	.	145079608	145080479	0	1	871	0
chr1	145088341	145088935	REMC_MyoepithelialBreast.9257	0	.	145088341	145088935	0	1	594	0
chr1	145088484	145089447	B_Cells_Pritchard.275415	0	.	145088484	145089447	0	1	963	0
chr1	145088703	145089045	B_cells_Cheung.17584	0	.	145088703	145089045	0	1	342	0
chr1	145090700	145091744	melanoma_Garraway_short_term_cultures.6524	0	.	145090700	145091744	0	1	1044	0
chr1	145090726	145092241	REMC_BreastStem.4966	0	.	145090726	145092241	0	1	1515	0
chr1	145090833	145091915	MCF10A_Thompson.2181	0	.	145090833	145091915	0	1	1082	0
chr1	145111282	145112689	H1_rRNA-depleted_UCSD_REMC.8724	0	+	145111282	145112689	0	2	480,63	0,1344
chr1	145237849	145238222	H1_polyA+.11284	0	.	145237849	145238222	0	1	373	0
chr1	145237909	145238227	B_cells_Cheung.17626	0	.	145237909	145238227	0	1	318	0
chr1	145238314	145239682	B_cells_Cheung.17627	0	.	145238314	145239682	0	1	1368	0
chr1	145238331	145240235	H1_polyA+.11285	0	.	145238331	145240235	0	1	1904	0
chr1	145238340	145239505	B_Cells_Pritchard.275543	0	.	145238340	145239505	0	1	1165	0
chr1	145238427	145239722	REMC_MyoepithelialBreast.9286	0	.	145238427	145239722	0	1	1295	0
chr1	145238816	145239503	REMC_LuminalBreast.10061	0	.	145238816	145239503	0	1	687	0
chr1	145242373	145244398	REMC_MyoepithelialBreast.9289	0	.	145242373	145244398	0	1	2025	0
chr1	145243033	145244354	REMC_LuminalBreast.10063	0	.	145243033	145244354	0	1	1321	0
chr1	145567716	145569852	REMC_LuminalBreast.10074	0	.	145567716	145569852	0	1	2136	0
chr1	145567746	145569968	B_Cells_Pritchard.276315	0	.	145567746	145569968	0	1	2222	0
chr1	145567774	145569042	REMC_MyoepithelialBreast.9304	0	.	145567774	145569042	0	1	1268	0
chr1	145568075	145569966	H9_polyA+.4726	0	.	145568075	145569966	0	1	1891	0
chr1	145568093	145569010	BT20_Thompson.2275	0	.	145568093	145569010	0	1	917	0
chr1	145568124	145569946	melanoma_Garraway_short_term_cultures.6551	0	.	145568124	145569946	0	1	1822	0
chr1	145568130	145569969	prostate_normal.5765	0	.	145568130	145569969	0	1	1839	0
chr1	145568130	145568463	liver_polyA+.13226	0	.	145568130	145568463	0	1	333	0
chr1	145568217	145569387	BT474_Burge_Thompson.3063	0	.	145568217	145569387	0	1	1170	0
chr1	145568305	145568759	HeLa_polyA+_Chen.3577	0	.	145568305	145568759	0	1	454	0
chr1	145570249	145573391	B_cells_Cheung.17649	0	.	145570249	145573391	0	1	3142	0
chr1	145570344	145571654	HeLa_polyA+_Chen.3579	0	.	145570344	145571654	0	1	1310	0
chr1	145570348	145571107	MCF7_Burge_Thompson.3069	0	.	145570348	145571107	0	1	759	0
chr1	145572140	145583417	H1_polyA+.11300	0	.	145572140	145583417	0	1	11277	0
chr1	145572390	145575131	B_Cells_Pritchard.276321	0	.	145572390	145575131	0	1	2741	0
chr1	145573786	145575477	melanoma_Garraway_short_term_cultures.6554	0	.	145573786	145575477	0	1	1691	0
chr1	145574018	145575051	HeLa_polyA+_Chen.3581	0	.	145574018	145575051	0	1	1033	0
chr1	145574282	145575028	MeWo_Garraway.3574	0	.	145574282	145575028	0	1	746	0
chr1	145575261	145578876	B_Cells_Pritchard.276323	0	.	145575261	145578876	0	1	3615	0
chr1	145576221	145579646	B_cells_Cheung.17653	0	.	145576221	145579646	0	1	3425	0
chr1	145576416	145578432	H9_polyA+.4732	0	.	145576416	145578432	0	1	2016	0
chr1	145578181	145578845	HeLa_polyA+_Chen.3584	0	.	145578181	145578845	0	1	664	0
chr1	145849259	145850100	testes_Burge.5298	0	.	145849259	145850100	0	1	841	0
chr1	145960712	145964796	Rinn_00000298	0	+	145960712	145964796	0	3	150,191,156	0,2680,3928
chr1	145963298	145964796	Rinn_00000299	0	+	145963298	145964796	0	2	285,156	0,1342
chr1	145963299	145964796	ENST00000422157	0	+	145963299	145964796	0	2	284,155	0,1342
chr1	145971801	145974011	HIT000249642_04	0	+	145971801	145974011	0	1	2210	0
chr1	146272397	146272921	prostate_carcinoma.9563	0	.	146272397	146272921	0	1	524	0
chr1	146288554	146290392	REMC_MyoepithelialBreast.9322	0	.	146288554	146290392	0	1	1838	0
chr1	146291081	146291933	prostate_normal.5791	0	.	146291081	146291933	0	1	852	0
chr1	146292479	146292929	prostate_normal.5792	0	.	146292479	146292929	0	1	450	0
chr1	146292570	146292905	A549_Myers.6297	0	.	146292570	146292905	0	1	335	0
chr1	146293236	146293900	melanoma_Garraway_short_term_cultures.6562	0	.	146293236	146293900	0	1	664	0
chr1	146397559	146398632	HIT000503286	0	+	146397559	146398632	0	1	1073	0
chr1	146542817	146543163	B_cells_Cheung.17682	0	.	146542817	146543163	0	1	346	0
chr1	146542817	146543134	HepG2_Caltech_ENCODE.3728	0	.	146542817	146543134	0	1	317	0
chr1	146542820	146543149	brain_AmbionMAQC.4446	0	.	146542820	146543149	0	1	329	0
chr1	146542827	146543163	H1_polyA+.11334	0	.	146542827	146543163	0	1	336	0
chr1	146542834	146543151	CD4_Plagnol_resting.6786	0	.	146542834	146543151	0	1	317	0
chr1	146542834	146543155	CD4_Plagnol_activated.6930	0	.	146542834	146543155	0	1	321	0
chr1	146609322	146614668	XR_078734	0	+	146609322	146614668	0	4	246,119,69,415	0,1875,4862,4931
chr1	147119015	147120341	Rinn_00000300	0	+	147119015	147120341	0	3	143,78,190	0,963,1136
chr1	147452925	147453997	Rinn_00000301	0	+	147452925	147453997	0	2	356,551	0,521
chr1	147452926	147453997	ENST00000421174	0	+	147452926	147453997	0	2	355,550	0,521
chr1	147482066	147483344	REMC_MyoepithelialBreast.9363	0	.	147482066	147483344	0	1	1278	0
chr1	147489289	147490641	B_cells_Cheung.17727	0	.	147489289	147490641	0	1	1352	0
chr1	147489782	147490606	melanoma_Garraway_short_term_cultures.6582	0	.	147489782	147490606	0	1	824	0
chr1	147489785	147490637	MCF7_Burge_Thompson.3102	0	.	147489785	147490637	0	1	852	0
chr1	147489999	147490600	HeLa_polyA-_Chen.1784	0	.	147489999	147490600	0	1	601	0
chr1	147490138	147490528	brain_AmbionMAQC.4454	0	.	147490138	147490528	0	1	390	0
chr1	147499546	147500412	B_Cells_Pritchard.278161	0	.	147499546	147500412	0	1	866	0
chr1	147499547	147500367	CD4_Plagnol_resting.6807	0	.	147499547	147500367	0	1	820	0
chr1	147500014	147500319	prostate_carcinoma.9608	0	.	147500014	147500319	0	1	305	0
chr1	147500024	147500408	CD4_Plagnol_activated.6975	0	.	147500024	147500408	0	1	384	0
chr1	147500024	147500486	B_cells_Cheung.17731	0	.	147500024	147500486	0	1	462	0
chr1	148255303	148257617	MIP101.6781	0	.	148255303	148257617	0	1	2314	0
chr1	148255371	148257952	melanoma_Garraway_short_term_cultures.6632	0	.	148255371	148257952	0	1	2581	0
chr1	148256005	148258318	H1_polyA+.11478	0	.	148256005	148258318	0	1	2313	0
chr1	148256790	148257351	B_Cells_Pritchard.278835	0	.	148256790	148257351	0	1	561	0
chr1	148256817	148257960	prostate_carcinoma.9678	0	.	148256817	148257960	0	1	1143	0
chr1	148256824	148257689	MCF7_Burge_Thompson.3118	0	.	148256824	148257689	0	1	865	0
chr1	148256939	148257911	T47D_Burge_Thompson.2797	0	.	148256939	148257911	0	1	972	0
chr1	148276336	148276965	B_cells_Cheung.17815	0	.	148276336	148276965	0	1	629	0
chr1	148276492	148276941	B_Cells_Pritchard.278903	0	+	148276492	148276941	0	1	449	0
chr1	148279145	148279657	B_cells_Cheung.17818	0	.	148279145	148279657	0	1	512	0
chr1	148279255	148279900	H1_polyA+.11486	0	.	148279255	148279900	0	1	645	0
chr1	148285300	148287349	H1_polyA+.11489	0	.	148285300	148287349	0	1	2049	0
chr1	148287590	148288425	H1_polyA+.11490	0	.	148287590	148288425	0	1	835	0
chr1	148287712	148288790	B_cells_Cheung.17828	0	.	148287712	148288790	0	1	1078	0
chr1	148289816	148290644	H1_polyA+.11492	0	.	148289816	148290644	0	1	828	0
chr1	148298065	148301303	H1_polyA+.11498	0	.	148298065	148301303	0	1	3238	0
chr1	148299401	148301032	B_Cells_Pritchard.279225	0	-	148299401	148301032	0	1	1631	0
chr1	148299913	148301128	melanoma_Garraway_short_term_cultures.6639	0	.	148299913	148301128	0	1	1215	0
chr1	148300029	148301832	B_cells_Cheung.17841	0	.	148300029	148301832	0	1	1803	0
chr1	148399854	148402173	REMC_LuminalBreast.10299	0	.	148399854	148402173	0	1	2319	0
chr1	148400569	148403461	CD4_Plagnol_resting.6855	0	.	148400569	148403461	0	1	2892	0
chr1	148401113	148401680	B_Cells_Pritchard.279435	0	+	148401113	148401680	0	1	567	0
chr1	148402007	148402550	CD4_Plagnol_activated.6991	0	.	148402007	148402550	0	1	543	0
chr1	148402698	148405205	CD4_Plagnol_activated.6993	0	.	148402698	148405205	0	1	2507	0
chr1	148403815	148405172	prostate_carcinoma.9671	0	.	148403815	148405172	0	1	1357	0
chr1	148406410	148411461	B_cells_Cheung.18217	0	.	148406410	148411461	0	1	5051	0
chr1	148410246	148411658	REMC_LuminalBreast.10302	0	.	148410246	148411658	0	1	1412	0
chr1	148411586	148422013	B_Cells_Pritchard.279801	0	+	148411586	148422013	0	4	1072,1388,1492,27	0,7380,8771,10400
chr1	148411724	148412414	CD4_Plagnol_activated.6996	0	.	148411724	148412414	0	1	690	0
chr1	148411993	148412880	melanoma_Garraway_short_term_cultures.6668	0	.	148411993	148412880	0	1	887	0
chr1	148416361	148430539	REMC_BreastStem.5131	0	.	148416361	148430539	0	1	14178	0
chr1	148418621	148421840	REMC_LuminalBreast.10305	0	.	148418621	148421840	0	1	3219	0
chr1	148419169	148420162	CD4_Plagnol_activated.6997	0	.	148419169	148420162	0	1	993	0
chr1	148419529	148420136	CD4_Plagnol_resting.6859	0	.	148419529	148420136	0	1	607	0
chr1	148428266	148430506	REMC_MyoepithelialBreast.9459	0	.	148428266	148430506	0	1	2240	0
chr1	148431357	148431677	B_cells_Cheung.17873	0	.	148431357	148431677	0	1	320	0
chr1	148433266	148434056	REMC_BreastStem.5138	0	.	148433266	148434056	0	1	790	0
chr1	148434864	148435955	REMC_BreastStem.5139	0	.	148434864	148435955	0	1	1091	0
chr1	148438006	148438800	REMC_BreastStem.5141	0	.	148438006	148438800	0	1	794	0
chr1	148595468	148596378	REMC_LuminalBreast.10338	0	.	148595468	148596378	0	1	910	0
chr1	148595514	148596617	H1_polyA+.11764	0	.	148595514	148596617	0	1	1103	0
chr1	148600285	148601659	REMC_LuminalBreast.10342	0	.	148600285	148601659	0	1	1374	0
chr1	148601300	148601897	ZR751_Thompson.2452	0	.	148601300	148601897	0	1	597	0
chr1	148718061	148720010	REMC_LuminalBreast.10402	0	.	148718061	148720010	0	1	1949	0
chr1	148719856	148720579	REMC_BreastStem.5106	0	.	148719856	148720579	0	1	723	0
chr1	148719863	148721147	REMC_MyoepithelialBreast.9538	0	.	148719863	148721147	0	1	1284	0
chr1	148720630	148721142	REMC_BreastStem.5107	0	.	148720630	148721142	0	1	512	0
chr1	148721421	148722912	REMC_MyoepithelialBreast.9539	0	.	148721421	148722912	0	1	1491	0
chr1	148754117	148755165	B_cells_Cheung.17955	0	.	148754117	148755165	0	1	1048	0
chr1	148754449	148755011	A549_Myers.6367	0	.	148754449	148755011	0	1	562	0
chr1	148754733	148755116	HepG2_Caltech_ENCODE.3814	0	.	148754733	148755116	0	1	383	0
chr1	148754856	148757132	ENST00000416894	0	+	148754856	148757132	0	2	306,260	0,2016
chr1	148755194	148756255	H1_polyA+.11604	0	.	148755194	148756255	0	1	1061	0
chr1	148755252	148756285	B_cells_Cheung.17956	0	.	148755252	148756285	0	1	1033	0
chr1	148762337	148765397	REMC_BreastStem.6258	0	.	148762337	148765397	0	1	3060	0
chr1	148762380	148765384	REMC_LuminalBreast.12081	0	.	148762380	148765384	0	1	3004	0
chr1	148762734	148765204	REMC_MyoepithelialBreast.10595	0	.	148762734	148765204	0	1	2470	0
chr1	148764220	148764558	B_cells_Cheung.17967	0	.	148764220	148764558	0	1	338	0
chr1	148766690	148775549	B_Cells_Pritchard.280947	0	-	148766690	148775549	0	4	175,67,137,56	0,2734,8498,8803
chr1	148766690	148775917	B_Cells_Pritchard.280949	0	+	148766690	148775917	0	2	109,635	0,8592
chr1	148768044	148768544	B_cells_Cheung.17969	0	.	148768044	148768544	0	1	500	0
chr1	148768865	148780070	REMC_LuminalBreast.12076	0	+	148768865	148780070	0	2	3021,5304	0,5901
chr1	148771259	148776437	Rinn_00001146	0	+	148771259	148776437	0	3	234,131,1672	0,496,3506
chr1	148771291	148779885	REMC_MyoepithelialBreast.10602	0	-	148771291	148779885	0	2	2982,4963	0,3631
chr1	148771291	148774369	REMC_MyoepithelialBreast.10600	0	.	148771291	148774369	0	1	3078	0
chr1	148771755	148776263	Rinn_00002162	0	+	148771755	148776263	0	2	131,1498	0,3010
chr1	148774542	148779885	REMC_MyoepithelialBreast.10601	0	.	148774542	148779885	0	1	5343	0
chr1	148774556	148780070	REMC_LuminalBreast.12078	0	.	148774556	148780070	0	1	5514	0
chr1	148774651	148775820	B_cells_Cheung.17972	0	.	148774651	148775820	0	1	1169	0
chr1	148774742	148776239	BT474_Burge_Thompson.3134	0	.	148774742	148776239	0	1	1497	0
chr1	148774761	148775871	HepG2_Caltech_ENCODE.3821	0	.	148774761	148775871	0	1	1110	0
chr1	148774763	148776453	MIP101.7063	0	.	148774763	148776453	0	1	1690	0
chr1	148774764	148775760	MCF7_Burge_Thompson.3136	0	.	148774764	148775760	0	1	996	0
chr1	148774776	148779003	prostate_normal.5863	0	+	148774776	148779003	0	3	1015,40,73	0,2149,4154
chr1	148774776	148775824	prostate_normal.5864	0	.	148774776	148775824	0	1	1048	0
chr1	148774816	148775799	brain_AmbionMAQC.4489	0	.	148774816	148775799	0	1	983	0
chr1	148774859	148775797	ZR751_Thompson.2462	0	.	148774859	148775797	0	1	938	0
chr1	148774894	148775528	MDAMB468_Thompson.2628	0	.	148774894	148775528	0	1	634	0
chr1	148774895	148775951	melanoma_Garraway_short_term_cultures.6744	0	.	148774895	148775951	0	1	1056	0
chr1	148775055	148776307	H1_polyA+.11609	0	.	148775055	148776307	0	1	1252	0
chr1	148775304	148775745	A549_Myers.6368	0	.	148775304	148775745	0	1	441	0
chr1	148781049	148782178	REMC_LuminalBreast.12084	0	.	148781049	148782178	0	1	1129	0
chr1	148781140	148781946	REMC_MyoepithelialBreast.10603	0	.	148781140	148781946	0	1	806	0
chr1	148781367	148781967	REMC_BreastStem.6445	0	.	148781367	148781967	0	1	600	0
chr1	148782529	148783780	REMC_MyoepithelialBreast.10604	0	.	148782529	148783780	0	1	1251	0
chr1	148782545	148783099	B_Cells_Pritchard.280999	0	+	148782545	148783099	0	1	554	0
chr1	148782605	148783714	REMC_BreastStem.6446	0	.	148782605	148783714	0	1	1109	0
chr1	148801057	148802040	A549_Myers.6431	0	.	148801057	148802040	0	1	983	0
chr1	148801065	148801591	prostate_normal.5951	0	.	148801065	148801591	0	1	526	0
chr1	148801829	148802501	MIP101.7073	0	.	148801829	148802501	0	1	672	0
chr1	148801864	148803191	K562.4903	0	.	148801864	148803191	0	1	1327	0
chr1	148808651	148809978	CD4_Plagnol_activated.7788	0	.	148808651	148809978	0	1	1327	0
chr1	148808657	148809463	MIP101.7077	0	.	148808657	148809463	0	1	806	0
chr1	148808666	148809543	HepG2_Caltech_ENCODE.3977	0	.	148808666	148809543	0	1	877	0
chr1	148809440	148809888	CD4_Snyder.7380	0	.	148809440	148809888	0	1	448	0
chr1	148820151	148822268	H1_polyA+.11820	0	.	148820151	148822268	0	1	2117	0
chr1	148820153	148827079	REMC_LuminalBreast.12123	0	.	148820153	148827079	0	1	6926	0
chr1	148820886	148823530	REMC_MyoepithelialBreast.10809	0	.	148820886	148823530	0	1	2644	0
chr1	148821111	148826067	REMC_BreastStem.6450	0	.	148821111	148826067	0	1	4956	0
chr1	148826194	148827074	REMC_BreastStem.6451	0	.	148826194	148827074	0	1	880	0
chr1	148827321	148836844	REMC_LuminalBreast.12124	0	.	148827321	148836844	0	1	9523	0
chr1	148827335	148836865	REMC_MyoepithelialBreast.10811	0	.	148827335	148836865	0	1	9530	0
chr1	148827832	148831664	H1_polyA+.11825	0	.	148827832	148831664	0	1	3832	0
chr1	148827853	148836836	REMC_BreastStem.6452	0	.	148827853	148836836	0	1	8983	0
chr1	148828672	148833350	B_cells_Cheung.18167	0	.	148828672	148833350	0	1	4678	0
chr1	148829777	148831293	HepG2_Caltech_ENCODE.3829	0	.	148829777	148831293	0	1	1516	0
chr1	148830444	148831180	brain_AmbionMAQC.4510	0	.	148830444	148831180	0	1	736	0
chr1	148830591	148831113	K562.4909	0	.	148830591	148831113	0	1	522	0
chr1	148830653	148831669	CD4_Plagnol_resting.6951	0	.	148830653	148831669	0	1	1016	0
chr1	148831951	148832282	HepG2_Caltech_ENCODE.3830	0	.	148831951	148832282	0	1	331	0
chr1	148834803	148835904	CD4_Plagnol_resting.6955	0	.	148834803	148835904	0	1	1101	0
chr1	148834804	148835907	melanoma_Garraway_short_term_cultures.6766	0	.	148834804	148835907	0	1	1103	0
chr1	148834911	148835356	brain_AmbionMAQC.4514	0	.	148834911	148835356	0	1	445	0
chr1	148834913	148835665	HeLa_polyA+_Chen.3676	0	.	148834913	148835665	0	1	752	0
chr1	148872133	148872920	HepG2_Caltech_ENCODE.3837	0	.	148872133	148872920	0	1	787	0
chr1	148872438	148872968	REMC_LuminalBreast.10409	0	.	148872438	148872968	0	1	530	0
chr1	148874272	148874588	melanoma_Garraway_short_term_cultures.6792	0	.	148874272	148874588	0	1	316	0
chr1	148876686	148879930	REMC_LuminalBreast.10413	0	.	148876686	148879930	0	1	3244	0
chr1	148878359	148879451	REMC_BreastStem.5126	0	.	148878359	148879451	0	1	1092	0
chr1	148879047	148879447	H1_polyA+.11832	0	.	148879047	148879447	0	1	400	0
chr1	148881342	148882970	REMC_BreastStem.5127	0	.	148881342	148882970	0	1	1628	0
chr1	148881852	148882987	B_cells_Cheung.18046	0	.	148881852	148882987	0	1	1135	0
chr1	148882055	148882922	MDAMB468_Thompson.2655	0	.	148882055	148882922	0	1	867	0
chr1	148882549	148882853	CD4_Plagnol_resting.6965	0	.	148882549	148882853	0	1	304	0
chr1	148963120	148963705	B_cells_Cheung.18080	0	.	148963120	148963705	0	1	585	0
chr1	149360074	149362788	REMC_MyoepithelialBreast.9597	0	.	149360074	149362788	0	1	2714	0
chr1	149360668	149363470	B_cells_Cheung.18148	0	.	149360668	149363470	0	1	2802	0
chr1	149360675	149362707	ZR751_Thompson.2577	0	.	149360675	149362707	0	1	2032	0
chr1	149360700	149363269	BT474_Burge_Thompson.3174	0	.	149360700	149363269	0	1	2569	0
chr1	149360722	149362782	REMC_BreastStem.5378	0	.	149360722	149362782	0	1	2060	0
chr1	149360723	149363182	HeLa_polyA+_Chen.3724	0	.	149360723	149363182	0	1	2459	0
chr1	149360744	149362708	MDAMB468_Thompson.2693	0	.	149360744	149362708	0	1	1964	0
chr1	149360752	149363102	K562.4999	0	.	149360752	149363102	0	1	2350	0
chr1	149360796	149362708	MCF10A_Thompson.2296	0	.	149360796	149362708	0	1	1912	0
chr1	149360798	149361857	T47D_Burge_Thompson.2981	0	.	149360798	149361857	0	1	1059	0
chr1	149360798	149362711	brain_AmbionMAQC.4589	0	.	149360798	149362711	0	1	1913	0
chr1	149360799	149362440	MCF7_Burge_Thompson.3250	0	.	149360799	149362440	0	1	1641	0
chr1	149360801	149362298	MDAMB231_Thompson.2418	0	.	149360801	149362298	0	1	1497	0
chr1	149360803	149361870	BT20_Thompson.2401	0	.	149360803	149361870	0	1	1067	0
chr1	149360813	149362304	CD4_Plagnol_resting.7012	0	.	149360813	149362304	0	1	1491	0
chr1	149360817	149362503	CD4_Plagnol_activated.7170	0	.	149360817	149362503	0	1	1686	0
chr1	149360820	149362112	CD4_Snyder.7278	0	.	149360820	149362112	0	1	1292	0
chr1	149360838	149362264	MeWo_Garraway.3717	0	.	149360838	149362264	0	1	1426	0
chr1	149360850	149362294	H9_polyA+.4891	0	.	149360850	149362294	0	1	1444	0
chr1	149360856	149362384	melanoma_Garraway_short_term_cultures.6852	0	.	149360856	149362384	0	1	1528	0
chr1	149360872	149362280	kidney_Gilad.9047	0	.	149360872	149362280	0	1	1408	0
chr1	149361253	149361768	MeI_Garraway.1897	0	.	149361253	149361768	0	1	515	0
chr1	149511397	149512303	REMC_BreastStem.5246	0	.	149511397	149512303	0	1	906	0
chr1	149511399	149511852	REMC_MyoepithelialBreast.9632	0	.	149511399	149511852	0	1	453	0
chr1	149511922	149517303	REMC_MyoepithelialBreast.9635	0	-	149511922	149517303	0	2	1036,1306	0,4075
chr1	149511922	149513659	REMC_MyoepithelialBreast.9636	0	.	149511922	149513659	0	1	1737	0
chr1	149512567	149513307	CD4_Plagnol_activated.7354	0	.	149512567	149513307	0	1	740	0
chr1	149512594	149513348	H1_polyA+.12180	0	.	149512594	149513348	0	1	754	0
chr1	149512594	149516436	H1_polyA+.12179	0	-	149512594	149516436	0	2	364,439	0,3403
chr1	149513887	149514733	REMC_LuminalBreast.10642	0	.	149513887	149514733	0	1	846	0
chr1	149514388	149514737	REMC_BreastStem.5287	0	.	149514388	149514737	0	1	349	0
chr1	149515428	149517303	REMC_MyoepithelialBreast.9637	0	.	149515428	149517303	0	1	1875	0
chr1	149515472	149516436	H1_polyA+.12181	0	.	149515472	149516436	0	1	964	0
chr1	149576336	149577647	B_cells_Cheung.19198	0	.	149576336	149577647	0	1	1311	0
chr1	149576358	149577343	H1_polyA+.12185	0	.	149576358	149577343	0	1	985	0
chr1	149577885	149578332	B_cells_Cheung.19199	0	.	149577885	149578332	0	1	447	0
chr1	149587470	149588761	REMC_LuminalBreast.10512	0	.	149587470	149588761	0	1	1291	0
chr1	149590875	149591842	REMC_LuminalBreast.10513	0	.	149590875	149591842	0	1	967	0
chr1	149633306	149636582	REMC_LuminalBreast.10522	0	.	149633306	149636582	0	1	3276	0
chr1	149993388	149994294	B_Cells_Pritchard.282199	0	.	149993388	149994294	0	1	906	0
chr1	150032629	150034052	REMC_LuminalBreast.10579	0	.	150032629	150034052	0	1	1423	0
chr1	150033158	150034405	H1_polyA+.11881	0	.	150033158	150034405	0	1	1247	0
chr1	150034527	150037583	H1_polyA+.11882	0	.	150034527	150037583	0	1	3056	0
chr1	150034666	150037936	MIP101.6900	0	.	150034666	150037936	0	1	3270	0
chr1	150034675	150037520	MCF7_Burge_Thompson.3260	0	.	150034675	150037520	0	1	2845	0
chr1	150034709	150037644	HepG2_Caltech_ENCODE.3925	0	.	150034709	150037644	0	1	2935	0
chr1	150034827	150037380	B_Cells_Pritchard.282323	0	.	150034827	150037380	0	1	2553	0
chr1	150035821	150037589	B_cells_Cheung.18366	0	.	150035821	150037589	0	1	1768	0
chr1	150035826	150037589	brain_AmbionMAQC.4678	0	.	150035826	150037589	0	1	1763	0
chr1	150036644	150037593	ZR751_Thompson.2550	0	.	150036644	150037593	0	1	949	0
chr1	150036644	150037405	melanoma_Garraway_short_term_cultures.6989	0	.	150036644	150037405	0	1	761	0
chr1	150036807	150037151	K562.5008	0	.	150036807	150037151	0	1	344	0
chr1	150297854	150300014	REMC_LuminalBreast.10629	0	.	150297854	150300014	0	1	2160	0
chr1	150317742	150318335	BT20_Thompson.2435	0	.	150317742	150318335	0	1	593	0
chr1	150407218	150407547	MIP101.6936	0	.	150407218	150407547	0	1	329	0
chr1	150427927	150428598	B_Cells_Pritchard.283445	0	.	150427927	150428598	0	1	671	0
chr1	150427934	150428857	prostate_carcinoma.9815	0	.	150427934	150428857	0	1	923	0
chr1	150436345	150436741	B_Cells_Pritchard.283475	0	.	150436345	150436741	0	1	396	0
chr1	150436358	150437671	melanoma_Garraway_short_term_cultures.7030	0	.	150436358	150437671	0	1	1313	0
chr1	151109917	151110278	A549_Myers.6625	0	.	151109917	151110278	0	1	361	0
chr1	151187808	151188355	MCF10A_Thompson.2360	0	.	151187808	151188355	0	1	547	0
chr1	151477557	151480329	B_cells_Cheung.18455	0	.	151477557	151480329	0	1	2772	0
chr1	151502278	151502834	B_cells_Cheung.18473	0	.	151502278	151502834	0	1	556	0
chr1	151510792	151512348	B_cells_Cheung.18478	0	.	151510792	151512348	0	1	1556	0
chr1	151510845	151512751	B_Cells_Pritchard.285767	0	-	151510845	151512751	0	1	1906	0
chr1	151531713	151532531	B_Cells_Pritchard.285871	0	.	151531713	151532531	0	1	818	0
chr1	151815558	151816205	REMC_MyoepithelialBreast.9803	0	.	151815558	151816205	0	1	647	0
chr1	151815968	151818932	REMC_LuminalBreast.10684	0	.	151815968	151818932	0	1	2964	0
chr1	151816009	151817132	REMC_BreastStem.5395	0	.	151816009	151817132	0	1	1123	0
chr1	151816347	151819850	REMC_MyoepithelialBreast.9804	0	.	151816347	151819850	0	1	3503	0
chr1	151817390	151818675	REMC_BreastStem.5396	0	.	151817390	151818675	0	1	1285	0
chr1	151820460	151821025	REMC_BreastStem.5397	0	.	151820460	151821025	0	1	565	0
chr1	151826373	151828318	prostate_normal.6047	0	+	151826373	151828318	0	2	524,74	0,1871
chr1	151826381	151826898	MIP101.6991	0	.	151826381	151826898	0	1	517	0
chr1	151827541	151828947	REMC_BreastStem.5403	0	.	151827541	151828947	0	1	1406	0
chr1	151831163	151832795	REMC_MyoepithelialBreast.9807	0	.	151831163	151832795	0	1	1632	0
chr1	151832943	151838374	REMC_LuminalBreast.10690	0	.	151832943	151838374	0	1	5431	0
chr1	151833327	151834552	REMC_BreastStem.5407	0	.	151833327	151834552	0	1	1225	0
chr1	151833672	151834412	BT474_Burge_Thompson.3354	0	.	151833672	151834412	0	1	740	0
chr1	151833701	151838369	REMC_MyoepithelialBreast.9809	0	.	151833701	151838369	0	1	4668	0
chr1	151833834	151834274	prostate_carcinoma.10053	0	.	151833834	151834274	0	1	440	0
chr1	151834613	151835409	REMC_BreastStem.5408	0	.	151834613	151835409	0	1	796	0
chr1	151835189	151835658	BT474_Burge_Thompson.3356	0	.	151835189	151835658	0	1	469	0
chr1	151838557	151838963	BT474_Burge_Thompson.3357	0	.	151838557	151838963	0	1	406	0
chr1	151838559	151839330	REMC_MyoepithelialBreast.9810	0	.	151838559	151839330	0	1	771	0
chr1	151838652	151839206	ZR751_Thompson.2874	0	.	151838652	151839206	0	1	554	0
chr1	151840032	151840803	REMC_BreastStem.5411	0	.	151840032	151840803	0	1	771	0
chr1	151841453	151842531	MCF10A_Thompson.2638	0	.	151841453	151842531	0	1	1078	0
chr1	151888071	151889734	REMC_BreastStem.5389	0	.	151888071	151889734	0	1	1663	0
chr1	151888078	151893349	REMC_MyoepithelialBreast.9817	0	.	151888078	151893349	0	1	5271	0
chr1	151888173	151889542	B_Cells_Pritchard.288723	0	+	151888173	151889542	0	1	1369	0
chr1	151888272	151889540	CD4_Plagnol_resting.7234	0	.	151888272	151889540	0	1	1268	0
chr1	151889658	151889970	CD4_Plagnol_resting.7235	0	.	151889658	151889970	0	1	312	0
chr1	151891593	151894117	REMC_LuminalBreast.10697	0	.	151891593	151894117	0	1	2524	0
chr1	151891639	151893510	REMC_BreastStem.5391	0	.	151891639	151893510	0	1	1871	0
chr1	151891692	151892012	B_Cells_Pritchard.288735	0	+	151891692	151892012	0	1	320	0
chr1	151935863	151936995	H1_polyA+.11970	0	.	151935863	151936995	0	1	1132	0
chr1	152019549	152023255	B_Cells_Pritchard.286713	0	-	152019549	152023255	0	2	79,1306	0,2400
chr1	152021967	152022820	REMC_MyoepithelialBreast.9795	0	.	152021967	152022820	0	1	853	0
chr1	152022393	152023007	B_cells_Cheung.18549	0	.	152022393	152023007	0	1	614	0
chr1	152022784	152023574	REMC_BreastStem.5459	0	.	152022784	152023574	0	1	790	0
chr1	152025010	152030382	B_Cells_Pritchard.286725	0	-	152025010	152030382	0	2	76,1867	0,3505
chr1	152027751	152029543	REMC_BreastStem.5458	0	.	152027751	152029543	0	1	1792	0
chr1	152028003	152031320	REMC_MyoepithelialBreast.9870	0	.	152028003	152031320	0	1	3317	0
chr1	152028213	152029120	REMC_LuminalBreast.10717	0	.	152028213	152029120	0	1	907	0
chr1	152028475	152029426	B_cells_Cheung.18550	0	.	152028475	152029426	0	1	951	0
chr1	152029206	152030584	REMC_LuminalBreast.10718	0	.	152029206	152030584	0	1	1378	0
chr1	152030883	152031373	B_cells_Cheung.18551	0	.	152030883	152031373	0	1	490	0
chr1	152033177	152033514	A549_Myers.6680	0	.	152033177	152033514	0	1	337	0
chr1	152033395	152034069	REMC_MyoepithelialBreast.9872	0	.	152033395	152034069	0	1	674	0
chr1	152917707	152918935	K562.5108	0	.	152917707	152918935	0	1	1228	0
chr1	152938355	152939647	prostate_carcinoma.10155	0	.	152938355	152939647	0	1	1292	0
chr1	152938357	152939661	prostate_normal.6118	0	.	152938357	152939661	0	1	1304	0
chr1	152938465	152939677	melanoma_Garraway_short_term_cultures.7184	0	.	152938465	152939677	0	1	1212	0
chr1	153116715	153117246	B_cells_Cheung.18790	0	.	153116715	153117246	0	1	531	0
chr1	153116727	153117178	A549_Myers.6805	0	.	153116727	153117178	0	1	451	0
chr1	153116737	153117204	B_Cells_Pritchard.288839	0	-	153116737	153117204	0	1	467	0
chr1	153117445	153117977	A549_Myers.6804	0	.	153117445	153117977	0	1	532	0
chr1	153117484	153117941	B_Cells_Pritchard.288843	0	-	153117484	153117941	0	1	457	0
chr1	153117921	153118337	B_cells_Cheung.18792	0	.	153117921	153118337	0	1	416	0
chr1	153118664	153119215	B_cells_Cheung.18793	0	.	153118664	153119215	0	1	551	0
chr1	153123602	153124191	B_cells_Cheung.18795	0	.	153123602	153124191	0	1	589	0
chr1	153125441	153126573	B_Cells_Pritchard.288907	0	.	153125441	153126573	0	1	1132	0
chr1	153130038	153130530	B_Cells_Pritchard.288917	0	.	153130038	153130530	0	1	492	0
chr1	153134205	153146527	B_Cells_Pritchard.288933	0	+	153134205	153146527	0	2	3112,1086	0,11236
chr1	153134747	153137899	B_cells_Cheung.18804	0	.	153134747	153137899	0	1	3152	0
chr1	153135497	153136575	REMC_MyoepithelialBreast.9952	0	.	153135497	153136575	0	1	1078	0
chr1	153135839	153137326	prostate_carcinoma.10165	0	+	153135839	153137326	0	2	746,309	0,1178
chr1	153137981	153138310	B_cells_Cheung.18805	0	.	153137981	153138310	0	1	329	0
chr1	153138948	153139642	B_Cells_Pritchard.288945	0	+	153138948	153139642	0	1	694	0
chr1	153140531	153144339	REMC_LuminalBreast.10823	0	.	153140531	153144339	0	1	3808	0
chr1	153141135	153141774	B_cells_Cheung.18809	0	.	153141135	153141774	0	1	639	0
chr1	153146677	153147200	B_Cells_Pritchard.288979	0	.	153146677	153147200	0	1	523	0
chr1	153147459	153152315	B_cells_Cheung.18816	0	.	153147459	153152315	0	1	4856	0
chr1	153147470	153160446	REMC_LuminalBreast.10825	0	-	153147470	153160446	0	2	4427,35	0,12941
chr1	153147624	153151991	B_Cells_Pritchard.288983	0	.	153147624	153151991	0	1	4367	0
chr1	153147740	153150109	H1_polyA+.12155	0	.	153147740	153150109	0	1	2369	0
chr1	153147799	153149948	prostate_carcinoma.10307	0	.	153147799	153149948	0	1	2149	0
chr1	153147861	153150890	REMC_MyoepithelialBreast.9955	0	.	153147861	153150890	0	1	3029	0
chr1	153150056	153152080	prostate_carcinoma.10308	0	.	153150056	153152080	0	1	2024	0
chr1	153159071	153160136	REMC_LuminalBreast.10828	0	.	153159071	153160136	0	1	1065	0
chr1	153159082	153159783	B_cells_Cheung.18823	0	.	153159082	153159783	0	1	701	0
chr1	153159090	153159664	B_Cells_Pritchard.289015	0	.	153159090	153159664	0	1	574	0
chr1	153161290	153162181	MIP101.7148	0	.	153161290	153162181	0	1	891	0
chr1	153177572	153178532	CD4_Plagnol_resting.7321	0	.	153177572	153178532	0	1	960	0
chr1	153177847	153178723	REMC_MyoepithelialBreast.9957	0	.	153177847	153178723	0	1	876	0
chr1	153177923	153178574	REMC_LuminalBreast.10830	0	.	153177923	153178574	0	1	651	0
chr1	153179088	153180481	REMC_LuminalBreast.10831	0	.	153179088	153180481	0	1	1393	0
chr1	153179114	153181559	REMC_MyoepithelialBreast.9958	0	.	153179114	153181559	0	1	2445	0
chr1	153180826	153181647	melanoma_Garraway_short_term_cultures.7198	0	.	153180826	153181647	0	1	821	0
chr1	153180928	153181259	CD4_Plagnol_resting.7324	0	.	153180928	153181259	0	1	331	0
chr1	153330560	153331114	A549_Myers.6833	0	.	153330560	153331114	0	1	554	0
chr1	153355709	153356057	ZR751_Thompson.2680	0	.	153355709	153356057	0	1	348	0
chr1	153355735	153356247	B_Cells_Pritchard.289441	0	.	153355735	153356247	0	1	512	0
chr1	153355745	153356183	BT474_Burge_Thompson.3334	0	.	153355745	153356183	0	1	438	0
chr1	153362792	153364955	REMC_LuminalBreast.10971	0	.	153362792	153364955	0	1	2163	0
chr1	153365048	153365400	A549_Myers.6838	0	.	153365048	153365400	0	1	352	0
chr1	153388354	153389141	REMC_LuminalBreast.10860	0	.	153388354	153389141	0	1	787	0
chr1	153390815	153395559	REMC_BreastStem.5522	0	.	153390815	153395559	0	1	4744	0
chr1	153394152	153395850	REMC_LuminalBreast.10863	0	.	153394152	153395850	0	1	1698	0
chr1	153394694	153395564	REMC_MyoepithelialBreast.10011	0	.	153394694	153395564	0	1	870	0
chr1	154378905	154381853	melanoma_Garraway_short_term_cultures.7515	0	.	154378905	154381853	0	1	2948	0
chr1	154380207	154380793	BT474_Burge_Thompson.3633	0	.	154380207	154380793	0	1	586	0
chr1	154382617	154383201	BT474_Burge_Thompson.3634	0	.	154382617	154383201	0	1	584	0
chr1	154624640	154632025	Rinn_00000317	0	+	154624640	154632025	0	2	139,5449	0,1936
chr1	154624641	154632025	ENST00000451362	0	+	154624641	154632025	0	2	138,5448	0,1936
chr1	154624641	154632025	HIT000000218	0	+	154624641	154632025	0	2	138,5448	0,1936
chr1	154628206	154628546	A549_Myers.7042	0	.	154628206	154628546	0	1	340	0
chr1	154668770	154669567	B_Cells_Pritchard.290605	0	.	154668770	154669567	0	1	797	0
chr1	154670667	154672378	B_cells_Cheung.19148	0	.	154670667	154672378	0	1	1711	0
chr1	154671380	154672698	B_Cells_Pritchard.290613	0	.	154671380	154672698	0	1	1318	0
chr1	154671447	154674527	brain_AmbionMAQC.5010	0	.	154671447	154674527	0	1	3080	0
chr1	154672528	154672985	A549_Myers.7058	0	.	154672528	154672985	0	1	457	0
chr1	154672944	154673449	B_cells_Cheung.19149	0	.	154672944	154673449	0	1	505	0
chr1	154682034	154684203	REMC_MyoepithelialBreast.10263	0	.	154682034	154684203	0	1	2169	0
chr1	154684389	154692260	REMC_MyoepithelialBreast.10264	0	.	154684389	154692260	0	1	7871	0
chr1	154685487	154689371	REMC_LuminalBreast.11012	0	.	154685487	154689371	0	1	3884	0
chr1	154685588	154688703	H1_polyA+.12517	0	.	154685588	154688703	0	1	3115	0
chr1	154689892	154690725	REMC_LuminalBreast.11014	0	.	154689892	154690725	0	1	833	0
chr1	154691567	154693960	REMC_LuminalBreast.11015	0	.	154691567	154693960	0	1	2393	0
chr1	154692467	154693811	REMC_BreastStem.5727	0	.	154692467	154693811	0	1	1344	0
chr1	154692469	154694463	REMC_MyoepithelialBreast.10265	0	.	154692469	154694463	0	1	1994	0
chr1	154692585	154693231	H1_polyA+.12514	0	.	154692585	154693231	0	1	646	0
chr1	154692607	154694311	B_Cells_Pritchard.290633	0	.	154692607	154694311	0	1	1704	0
chr1	154692763	154694047	A549_Myers.7061	0	.	154692763	154694047	0	2	737,474	0,810
chr1	154693082	154694131	CD4_Snyder.7814	0	.	154693082	154694131	0	1	1049	0
chr1	154698011	154698978	CD4_Plagnol_activated.7880	0	.	154698011	154698978	0	1	967	0
chr1	154698024	154698961	CD4_Plagnol_resting.7659	0	.	154698024	154698961	0	1	937	0
chr1	154738198	154744809	Rinn_00001690	0	-	154738198	154744809	0	3	75,51,243	0,4396,6368
chr1	154738947	154739475	A549_Myers.7071	0	.	154738947	154739475	0	1	528	0
chr1	154739582	154740549	H1_polyA+.12511	0	.	154739582	154740549	0	1	967	0
chr1	154741154	154741486	A549_Myers.7072	0	.	154741154	154741486	0	1	332	0
chr1	154741370	154741752	skeletal_muscle_Burge.3476	0	.	154741370	154741752	0	1	382	0
chr1	154743668	154744911	B_cells_Cheung.19163	0	.	154743668	154744911	0	1	1243	0
chr1	154824874	154826457	REMC_MyoepithelialBreast.10273	0	.	154824874	154826457	0	1	1583	0
chr1	154825194	154826464	REMC_BreastStem.5714	0	.	154825194	154826464	0	1	1270	0
chr1	154825217	154826489	REMC_LuminalBreast.11026	0	.	154825217	154826489	0	1	1272	0
chr1	154839049	154839575	HepG2_Caltech_ENCODE.4125	0	.	154839049	154839575	0	1	526	0
chr1	154839752	154842339	H1_polyA+.12541	0	.	154839752	154842339	0	1	2587	0
chr1	154841507	154842580	B_cells_Cheung.19214	0	.	154841507	154842580	0	2	823,190	0,883
chr1	154842014	154842547	brain_AmbionMAQC.5030	0	.	154842014	154842547	0	1	533	0
chr1	154842039	154842638	B_Cells_Pritchard.293481	0	+	154842039	154842638	0	1	599	0
chr1	154844518	154845064	B_cells_Cheung.19217	0	.	154844518	154845064	0	1	546	0
chr1	154845206	154845799	B_cells_Cheung.19218	0	.	154845206	154845799	0	1	593	0
chr1	154845233	154846368	H1_polyA+.12531	0	.	154845233	154846368	0	1	1135	0
chr1	154845272	154845826	brain_AmbionMAQC.5035	0	.	154845272	154845826	0	1	554	0
chr1	154852358	154853753	brain_AmbionMAQC.5039	0	.	154852358	154853753	0	1	1395	0
chr1	154852404	154853509	B_cells_Cheung.19220	0	.	154852404	154853509	0	1	1105	0
chr1	154852409	154852839	prostate_normal.6332	0	.	154852409	154852839	0	1	430	0
chr1	154867220	154867589	melanoma_Garraway_short_term_cultures.7600	0	.	154867220	154867589	0	1	369	0
chr1	154873059	154873372	HeLa_polyA+_Chen.4153	0	.	154873059	154873372	0	1	313	0
chr1	154874082	154876415	REMC_BreastStem.5734	0	.	154874082	154876415	0	1	2333	0
chr1	154874235	154876739	MeWo_Garraway.4115	0	.	154874235	154876739	0	1	2504	0
chr1	154874240	154876842	MCF7_Burge_Thompson.3584	0	.	154874240	154876842	0	1	2602	0
chr1	154874241	154876904	MDAMB231_Thompson.2690	0	.	154874241	154876904	0	1	2663	0
chr1	154874283	154875085	REMC_MyoepithelialBreast.10276	0	.	154874283	154875085	0	1	802	0
chr1	154874303	154875238	BT20_Thompson.2648	0	.	154874303	154875238	0	1	935	0
chr1	154874359	154874886	MB435_Burge.4875	0	.	154874359	154874886	0	1	527	0
chr1	154874501	154875052	H1_polyA+.12538	0	.	154874501	154875052	0	1	551	0
chr1	154875167	154875514	MB435_Burge.4877	0	.	154875167	154875514	0	1	347	0
chr1	154896444	154898061	pHIT000098497	0	-	154896444	154898061	0	3	206,98,434	0,1035,1183
chr1	154896444	154897683	pHIT000002670	0	-	154896444	154897683	0	3	206,98,56	0,1035,1183
chr1	154896444	154898415	pHIT000002696	0	-	154896444	154898415	0	3	206,98,8	0,1035,1963
chr1	154903305	154903937	REMC_MyoepithelialBreast.10282	0	.	154903305	154903937	0	1	632	0
chr1	154924111	154928413	Rinn_00000646	0	-	154924111	154928413	0	2	3186,936	0,3366
chr1	154924112	154928413	ENST00000441272	0	-	154924112	154928413	0	2	3185,935	0,3366
chr1	154926107	154928078	REMC_BreastStem.5755	0	.	154926107	154928078	0	1	1971	0
chr1	154926576	154928672	REMC_LuminalBreast.11036	0	.	154926576	154928672	0	1	2096	0
chr1	154928682	154929661	REMC_BreastStem.5756	0	.	154928682	154929661	0	1	979	0
chr1	154928760	154929599	REMC_LuminalBreast.11037	0	.	154928760	154929599	0	1	839	0
chr1	154929593	154929987	B_Cells_Pritchard.291123	0	.	154929593	154929987	0	1	394	0
chr1	154929604	154930084	T47D_Burge_Thompson.3203	0	.	154929604	154930084	0	1	480	0
chr1	154929680	154930891	REMC_LuminalBreast.11038	0	.	154929680	154930891	0	1	1211	0
chr1	154930274	154930599	T47D_Burge_Thompson.3204	0	.	154930274	154930599	0	1	325	0
chr1	154943827	154944944	brain_AmbionMAQC.5043	0	.	154943827	154944944	0	1	1117	0
chr1	154943838	154945419	HeLa_polyA+_Chen.4173	0	.	154943838	154945419	0	1	1581	0
chr1	154944280	154948210	melanoma_Garraway_short_term_cultures.7614	0	.	154944280	154948210	0	1	3930	0
chr1	154944581	154948259	CD4_Plagnol_activated.7893	0	.	154944581	154948259	0	1	3678	0
chr1	154945126	154947306	brain_AmbionMAQC.5045	0	.	154945126	154947306	0	1	2180	0
chr1	154945667	154946118	NEC_from_H9.8692	0	.	154945667	154946118	0	1	451	0
chr1	154945715	154946621	MDAMB468_Thompson.3163	0	.	154945715	154946621	0	1	906	0
chr1	154945899	154947402	prostate_normal.6343	0	.	154945899	154947402	0	1	1503	0
chr1	154945899	154950087	prostate_normal.6342	0	+	154945899	154950087	0	2	1062,28	0,4160
chr1	154945922	154946547	A549_Myers.7221	0	.	154945922	154946547	0	1	625	0
chr1	154947406	154947867	liver_polyA+.15046	0	.	154947406	154947867	0	1	461	0
chr1	154948363	154949569	CD4_Plagnol_activated.7894	0	.	154948363	154949569	0	1	1206	0
chr1	154948364	154949515	melanoma_Garraway_short_term_cultures.7611	0	.	154948364	154949515	0	1	1151	0
chr1	154948369	154952582	B_Cells_Pritchard.299645	0	+	154948369	154952582	0	3	1444,162,818	0,2855,3395
chr1	154948584	154949539	prostate_normal.6344	0	.	154948584	154949539	0	1	955	0
chr1	154948665	154949516	ZR751_Thompson.3015	0	.	154948665	154949516	0	1	851	0
chr1	154948769	154949604	HeLa_polyA+_Chen.4174	0	.	154948769	154949604	0	1	835	0
chr1	154949154	154949456	liver_polyA+.15048	0	.	154949154	154949456	0	1	302	0
chr1	154951196	154954582	CD4_Plagnol_resting.7857	0	.	154951196	154954582	0	1	3386	0
chr1	154953433	154954556	CD4_Plagnol_activated.7899	0	.	154953433	154954556	0	1	1123	0
chr1	154953447	154954157	MB435_Burge.5070	0	.	154953447	154954157	0	1	710	0
chr1	154953457	154954204	prostate_normal.6347	0	.	154953457	154954204	0	1	747	0
chr1	154953471	154954241	melanoma_Garraway_short_term_cultures.7616	0	.	154953471	154954241	0	1	770	0
chr1	154953472	154954200	HeLa_polyA+_Chen.4169	0	.	154953472	154954200	0	1	728	0
chr1	154953504	154954558	MDAMB468_Thompson.3166	0	.	154953504	154954558	0	1	1054	0
chr1	154953505	154954146	brain_AmbionMAQC.5049	0	.	154953505	154954146	0	1	641	0
chr1	154953620	154954226	liver_polyA+.15052	0	.	154953620	154954226	0	1	606	0
chr1	154957068	154957705	MeWo_Garraway.4147	0	.	154957068	154957705	0	1	637	0
chr1	155038927	155039280	A549_Myers.7129	0	.	155038927	155039280	0	1	353	0
chr1	155119294	155123652	K562.5329	0	.	155119294	155123652	0	1	4358	0
chr1	155122667	155125633	prostate_carcinoma.10415	0	+	155122667	155125633	0	2	358,1172	0,1794
chr1	155122667	155123840	prostate_carcinoma.10416	0	.	155122667	155123840	0	1	1173	0
chr1	155122849	155123504	prostate_normal.6379	0	.	155122849	155123504	0	1	655	0
chr1	155123770	155125921	K562.5330	0	.	155123770	155125921	0	1	2151	0
chr1	155124439	155125633	prostate_carcinoma.10417	0	.	155124439	155125633	0	1	1194	0
chr1	155154979	155155791	REMC_BreastStem.5828	0	.	155154979	155155791	0	1	812	0
chr1	155341052	155344105	B_cells_Cheung.19293	0	.	155341052	155344105	0	1	3053	0
chr1	155341914	155343214	B_Cells_Pritchard.292345	0	.	155341914	155343214	0	1	1300	0
chr1	155343981	155344379	B_Cells_Pritchard.292351	0	.	155343981	155344379	0	1	398	0
chr1	155344407	155344903	B_cells_Cheung.19295	0	.	155344407	155344903	0	1	496	0
chr1	155345166	155345802	B_Cells_Pritchard.292355	0	.	155345166	155345802	0	1	636	0
chr1	155345375	155345905	B_cells_Cheung.19296	0	.	155345375	155345905	0	1	530	0
chr1	155347742	155356295	pHIT000002720	0	-	155347742	155356295	0	2	308,58	0,8495
chr1	155348737	155349592	B_Cells_Pritchard.292369	0	.	155348737	155349592	0	1	855	0
chr1	155392433	155392959	A549_Myers.7207	0	.	155392433	155392959	0	1	526	0
chr1	155425049	155426040	B_cells_Cheung.19311	0	.	155425049	155426040	0	1	991	0
chr1	155425205	155425870	B_Cells_Pritchard.292565	0	.	155425205	155425870	0	1	665	0
chr1	155426092	155427501	B_cells_Cheung.19312	0	.	155426092	155427501	0	1	1409	0
chr1	155426177	155427429	B_Cells_Pritchard.292567	0	.	155426177	155427429	0	1	1252	0
chr1	155426213	155427389	prostate_normal.6400	0	.	155426213	155427389	0	1	1176	0
chr1	155428317	155430824	B_cells_Cheung.19314	0	.	155428317	155430824	0	1	2507	0
chr1	155511236	155521368	K562.5342	0	+	155511236	155521368	0	4	100,305,135,2377	0,1417,5896,7755
chr1	155513632	155514483	K562.5344	0	.	155513632	155514483	0	1	851	0
chr1	155515316	155515967	B_Cells_Pritchard.292787	0	.	155515316	155515967	0	1	651	0
chr1	155518833	155521399	H1_polyA+.12601	0	.	155518833	155521399	0	1	2566	0
chr1	155520596	155521181	B_Cells_Pritchard.292801	0	.	155520596	155521181	0	1	585	0
chr1	155521639	155523805	H1_polyA+.12602	0	.	155521639	155523805	0	1	2166	0
chr1	155521719	155523805	B_Cells_Pritchard.292805	0	.	155521719	155523805	0	1	2086	0
chr1	155528049	155528407	B_Cells_Pritchard.292817	0	.	155528049	155528407	0	1	358	0
chr1	155546715	155547145	B_cells_Cheung.19323	0	.	155546715	155547145	0	1	430	0
chr1	155604978	155653945	pHIT000098523	0	+	155604978	155653945	0	4	58,297,239,115	0,45928,48026,48852
chr1	155654893	155655594	B_cells_Cheung.19325	0	.	155654893	155655594	0	1	701	0
chr1	156336705	156338901	REMC_MyoepithelialBreast.10344	0	.	156336705	156338901	0	1	2196	0
chr1	156336830	156338886	melanoma_Garraway_short_term_cultures.7712	0	.	156336830	156338886	0	1	2056	0
chr1	156337459	156339029	H1_polyA+.12652	0	.	156337459	156339029	0	1	1570	0
chr1	156346753	156349959	REMC_MyoepithelialBreast.10347	0	.	156346753	156349959	0	1	3206	0
chr1	156347710	156351717	REMC_BreastStem.5850	0	.	156347710	156351717	0	1	4007	0
chr1	156347767	156350318	H1_polyA+.12657	0	.	156347767	156350318	0	1	2551	0
chr1	156347787	156349173	melanoma_Garraway_short_term_cultures.7718	0	.	156347787	156349173	0	1	1386	0
chr1	156349707	156350233	A549_Myers.7254	0	.	156349707	156350233	0	1	526	0
chr1	156349775	156350872	melanoma_Garraway_short_term_cultures.7719	0	.	156349775	156350872	0	1	1097	0
chr1	156351414	156353752	REMC_MyoepithelialBreast.10349	0	.	156351414	156353752	0	1	2338	0
chr1	156351810	156352647	REMC_BreastStem.5851	0	.	156351810	156352647	0	1	837	0
chr1	156353855	156357512	REMC_BreastStem.5853	0	.	156353855	156357512	0	1	3657	0
chr1	156355701	156356567	REMC_MyoepithelialBreast.10350	0	.	156355701	156356567	0	1	866	0
chr1	156362451	156363295	REMC_BreastStem.5857	0	.	156362451	156363295	0	1	844	0
chr1	156434335	156440291	ENST00000415019	0	-	156434335	156440291	0	2	1914,85	0,5871
chr1	156434335	156440291	HIT000022775	0	-	156434335	156440291	0	2	1914,85	0,5871
chr1	156597379	156600847	HIT000048220	0	-	156597379	156600847	0	1	3468	0
chr1	157294755	157296015	CD4_Plagnol_activated.8034	0	.	157294755	157296015	0	1	1260	0
chr1	157294769	157296592	H1_polyA+.12676	0	.	157294769	157296592	0	1	1823	0
chr1	157294797	157296209	REMC_BreastStem.5871	0	.	157294797	157296209	0	1	1412	0
chr1	157295145	157295624	lymph_node_Burge.5881	0	.	157295145	157295624	0	1	479	0
chr1	157758938	157759659	liver_polyA+.14886	0	+	157758938	157759659	0	2	165,230	0,491
chr1	157758938	157759659	kidney_Gilad.10068	0	+	157758938	157759659	0	2	165,230	0,491
chr1	157773324	157776915	liver_polyA+.14891	0	+	157773324	157776915	0	2	456,70	0,3521
chr1	157831168	157832777	kidney_Gilad.10082	0	.	157831168	157832777	0	1	1609	0
chr1	157835741	157841353	kidney_Gilad.10087	0	+	157835741	157841353	0	3	385,2442,70	0,415,5542
chr1	158031922	158032605	prostate_carcinoma.10533	0	.	158031922	158032605	0	1	683	0
chr1	158100321	158104236	melanoma_Garraway_short_term_cultures.7752	0	.	158100321	158104236	0	1	3915	0
chr1	158101931	158104029	MCF10A_Thompson.2598	0	.	158101931	158104029	0	1	2098	0
chr1	158102580	158103951	MDAMB231_Thompson.2734	0	.	158102580	158103951	0	1	1371	0
chr1	158102947	158103999	T47D_Burge_Thompson.3265	0	.	158102947	158103999	0	1	1052	0
chr1	158192289	158193283	REMC_BreastStem.5886	0	.	158192289	158193283	0	1	994	0
chr1	158194386	158194808	A549_Myers.7297	0	.	158194386	158194808	0	1	422	0
chr1	158207021	158207821	REMC_LuminalBreast.11153	0	.	158207021	158207821	0	1	800	0
chr1	158209545	158211370	REMC_LuminalBreast.11154	0	.	158209545	158211370	0	1	1825	0
chr1	158210804	158219106	prostate_normal.6467	0	+	158210804	158219106	0	2	105,1898	0,6404
chr1	158211928	158212330	HME_Burge.5196	0	.	158211928	158212330	0	1	402	0
chr1	158214278	158215385	BT474_Burge_Thompson.3584	0	.	158214278	158215385	0	1	1107	0
chr1	158216092	158216975	prostate_carcinoma.10563	0	.	158216092	158216975	0	1	883	0
chr1	158216114	158219197	MDAMB468_Thompson.3098	0	.	158216114	158219197	0	1	3083	0
chr1	158219429	158223078	MDAMB468_Thompson.3099	0	.	158219429	158223078	0	1	3649	0
chr1	158220548	158222629	REMC_LuminalBreast.11156	0	.	158220548	158222629	0	1	2081	0
chr1	158223140	158224154	MDAMB468_Thompson.3100	0	.	158223140	158224154	0	1	1014	0
chr1	158223395	158224150	REMC_LuminalBreast.11157	0	.	158223395	158224150	0	1	755	0
chr1	158228392	158229063	B_Cells_Pritchard.299045	0	.	158228392	158229063	0	1	671	0
chr1	158254446	158255192	B_Cells_Pritchard.299141	0	+	158254446	158255192	0	1	746	0
chr1	158261569	158262628	BT20_Thompson.2689	0	.	158261569	158262628	0	1	1059	0
chr1	158337554	158338364	A549_Myers.7315	0	.	158337554	158338364	0	1	810	0
chr1	158765922	158767524	B_Cells_Pritchard.299983	0	.	158765922	158767524	0	1	1602	0
chr1	158768081	158768597	B_cells_Cheung.19613	0	.	158768081	158768597	0	1	516	0
chr1	158901084	158901675	CD4_Plagnol_activated.8117	0	.	158901084	158901675	0	1	591	0
chr1	158910471	158911382	CD4_Plagnol_resting.7913	0	.	158910471	158911382	0	1	911	0
chr1	158910497	158911422	H1_polyA+.12761	0	.	158910497	158911422	0	1	925	0
chr1	158910574	158911389	melanoma_Garraway_short_term_cultures.7815	0	.	158910574	158911389	0	1	815	0
chr1	158910629	158911563	CD4_Plagnol_activated.8240	0	.	158910629	158911563	0	1	934	0
chr1	158962888	158963495	B_cells_Cheung.19671	0	.	158962888	158963495	0	1	607	0
chr1	158994604	158995797	B_Cells_Pritchard.300953	0	.	158994604	158995797	0	1	1193	0
chr1	158994780	158995532	B_cells_Cheung.19676	0	.	158994780	158995532	0	1	752	0
chr1	158995940	159027303	B_Cells_Pritchard.300957	0	-	158995940	159027303	0	4	4279,9783,701,1095	0,6549,16421,30268
chr1	159014061	159014487	B_Cells_Pritchard.300965	0	+	159014061	159014487	0	1	426	0
chr1	159221932	159226034	REMC_MyoepithelialBreast.10448	0	.	159221932	159226034	0	1	4102	0
chr1	159222004	159230617	BT474_Burge_Thompson.3741	0	+	159222004	159230617	0	2	5336,201	0,8412
chr1	159222007	159225463	MDAMB468_Thompson.3085	0	.	159222007	159225463	0	1	3456	0
chr1	159222031	159222686	ZR751_Thompson.2878	0	.	159222031	159222686	0	1	655	0
chr1	159222092	159222678	MCF10A_Thompson.2645	0	.	159222092	159222678	0	1	586	0
chr1	159222104	159222671	BT20_Thompson.2709	0	.	159222104	159222671	0	1	567	0
chr1	159222104	159222685	T47D_Burge_Thompson.3294	0	.	159222104	159222685	0	1	581	0
chr1	159222140	159222680	CD4_Plagnol_resting.7881	0	.	159222140	159222680	0	1	540	0
chr1	159222245	159222726	H9_polyA+.5415	0	.	159222245	159222726	0	1	481	0
chr1	159222301	159222658	MCF7_Burge_Thompson.3640	0	.	159222301	159222658	0	1	357	0
chr1	159222794	159226039	MCF10A_Thompson.2646	0	.	159222794	159226039	0	1	3245	0
chr1	159225491	159227825	B_cells_Cheung.28297	0	.	159225491	159227825	0	1	2334	0
chr1	159226155	159230618	REMC_MyoepithelialBreast.10449	0	.	159226155	159230618	0	1	4463	0
chr1	159226241	159227822	BT474_Burge_Thompson.3742	0	.	159226241	159227822	0	1	1581	0
chr1	159226290	159227811	MCF10A_Thompson.2647	0	.	159226290	159227811	0	1	1521	0
chr1	159226290	159227806	MDAMB468_Thompson.3087	0	.	159226290	159227806	0	1	1516	0
chr1	159226667	159227821	ZR751_Thompson.2882	0	.	159226667	159227821	0	1	1154	0
chr1	159226830	159227830	REMC_BreastStem.5944	0	.	159226830	159227830	0	1	1000	0
chr1	159226831	159227824	BT20_Thompson.2711	0	.	159226831	159227824	0	1	993	0
chr1	159228350	159229076	ZR751_Thompson.2884	0	.	159228350	159229076	0	1	726	0
chr1	159228389	159228783	H1_rRNA-depleted_UCSD_REMC.10221	0	.	159228389	159228783	0	1	394	0
chr1	159228398	159230519	HME_Burge.5326	0	+	159228398	159230519	0	2	204,103	0,2018
chr1	159228467	159229072	MDAMB468_Thompson.3084	0	.	159228467	159229072	0	1	605	0
chr1	159370937	159376782	H1_polyA+.12837	0	.	159370937	159376782	0	1	5845	0
chr1	159370985	159375171	HeLa_polyA+_Chen.4322	0	.	159370985	159375171	0	1	4186	0
chr1	159371239	159372532	liver_polyA+.55594	0	-	159371239	159372532	0	2	77,237	0,1056
chr1	159372161	159376648	REMC_BreastStem.6117	0	.	159372161	159376648	0	1	4487	0
chr1	159372270	159374049	CD4_Plagnol_resting.7985	0	.	159372270	159374049	0	1	1779	0
chr1	159372274	159374233	melanoma_Garraway_short_term_cultures.7859	0	.	159372274	159374233	0	1	1959	0
chr1	159372515	159373558	HepG2_Caltech_ENCODE.4230	0	.	159372515	159373558	0	1	1043	0
chr1	159381026	159383752	REMC_BreastStem.6121	0	.	159381026	159383752	0	1	2726	0
chr1	159381854	159383745	REMC_LuminalBreast.11471	0	.	159381854	159383745	0	1	1891	0
chr1	159382756	159383410	HeLa_polyA+_Chen.4325	0	.	159382756	159383410	0	1	654	0
chr1	159382790	159383714	REMC_MyoepithelialBreast.10475	0	.	159382790	159383714	0	1	924	0
chr1	159382817	159383486	prostate_carcinoma.12566	0	.	159382817	159383486	0	1	669	0
chr1	159415435	159421309	B_cells_Cheung.21839	0	.	159415435	159421309	0	1	5874	0
chr1	159417878	159418268	CD4_Plagnol_resting.7917	0	.	159417878	159418268	0	1	390	0
chr1	159418391	159419863	REMC_LuminalBreast.11477	0	.	159418391	159419863	0	1	1472	0
chr1	159419287	159419736	CD4_Plagnol_resting.7918	0	.	159419287	159419736	0	1	449	0
chr1	159419314	159419689	CD4_Plagnol_activated.8183	0	.	159419314	159419689	0	1	375	0
chr1	159419342	159419708	H1_polyA+.12844	0	.	159419342	159419708	0	1	366	0
chr1	159419400	159419833	REMC_MyoepithelialBreast.10482	0	.	159419400	159419833	0	1	433	0
chr1	159421577	159424479	H1_polyA+.12846	0	.	159421577	159424479	0	1	2902	0
chr1	159968320	159968754	B_cells_Cheung.20051	0	.	159968320	159968754	0	1	434	0
chr1	159996043	159996527	B_cells_Cheung.20056	0	.	159996043	159996527	0	1	484	0
chr1	160203081	160204665	B_cells_Cheung.20161	0	.	160203081	160204665	0	1	1584	0
chr1	160203200	160204601	B_Cells_Pritchard.303465	0	.	160203200	160204601	0	1	1401	0
chr1	160203464	160204641	melanoma_Garraway_short_term_cultures.7951	0	.	160203464	160204641	0	1	1177	0
chr1	160203542	160204416	MIP101.7668	0	.	160203542	160204416	0	1	874	0
chr1	160204869	160208136	REMC_LuminalBreast.11461	0	.	160204869	160208136	0	1	3267	0
chr1	160204921	160207579	B_cells_Cheung.20162	0	.	160204921	160207579	0	1	2658	0
chr1	160204930	160208842	B_Cells_Pritchard.303467	0	+	160204930	160208842	0	2	535,1055	0,2857
chr1	160205473	160207631	CD4_Plagnol_resting.7969	0	.	160205473	160207631	0	1	2158	0
chr1	160205499	160207995	CD4_Plagnol_activated.8292	0	.	160205499	160207995	0	1	2496	0
chr1	160206335	160207365	MIP101.7669	0	.	160206335	160207365	0	1	1030	0
chr1	160208517	160209051	B_cells_Cheung.20163	0	.	160208517	160209051	0	1	534	0
chr1	160208955	160209874	B_Cells_Pritchard.303473	0	.	160208955	160209874	0	1	919	0
chr1	160214119	160215258	B_Cells_Pritchard.303483	0	.	160214119	160215258	0	1	1139	0
chr1	160214216	160215006	H1_polyA+.12938	0	.	160214216	160215006	0	1	790	0
chr1	160625262	160626031	prostate_carcinoma.10851	0	.	160625262	160626031	0	1	769	0
chr1	160654004	160655829	REMC_LuminalBreast.11489	0	.	160654004	160655829	0	1	1825	0
chr1	160670631	160672489	REMC_LuminalBreast.11494	0	.	160670631	160672489	0	1	1858	0
chr1	160786568	160787899	REMC_MyoepithelialBreast.10734	0	.	160786568	160787899	0	1	1331	0
chr1	160838393	160838922	B_cells_Cheung.20208	0	.	160838393	160838922	0	1	529	0
chr1	161058752	161059606	MCF10A_Thompson.2701	0	.	161058752	161059606	0	1	854	0
chr1	161155594	161156614	brain_AmbionMAQC.5303	0	.	161155594	161156614	0	1	1020	0
chr1	161627080	161654077	pHIT000098612	0	+	161627080	161654077	0	4	33,81,119,156	0,7780,9439,26841
chr1	162719791	162721216	H1_polyA+.13054	0	.	162719791	162721216	0	1	1425	0
chr1	162727196	162730652	H1_polyA+.13056	0	.	162727196	162730652	0	1	3456	0
chr1	163145844	163148339	Rinn_00001710	0	-	163145844	163148339	0	2	127,204	0,2291
chr1	163721543	163725279	HIT000045704	0	+	163721543	163725279	0	1	3736	0
chr1	163942468	163943810	REMC_MyoepithelialBreast.10800	0	.	163942468	163943810	0	1	1342	0
chr1	163942714	163943458	melanoma_Garraway_short_term_cultures.8054	0	.	163942714	163943458	0	1	744	0
chr1	163954617	163955633	melanoma_Garraway_short_term_cultures.8058	0	.	163954617	163955633	0	1	1016	0
chr1	163954782	163955645	REMC_LuminalBreast.11537	0	.	163954782	163955645	0	1	863	0
chr1	164149524	164160379	REMC_LuminalBreast.11543	0	.	164149524	164160379	0	1	10855	0
chr1	164150079	164151209	B_cells_Cheung.20439	0	.	164150079	164151209	0	1	1130	0
chr1	164150116	164150776	MeWo_Garraway.4331	0	.	164150116	164150776	0	1	660	0
chr1	164153645	164155346	B_cells_Cheung.20442	0	.	164153645	164155346	0	1	1701	0
chr1	164153851	164156362	REMC_BreastStem.6092	0	.	164153851	164156362	0	1	2511	0
chr1	164153972	164155108	BT474_Burge_Thompson.3777	0	.	164153972	164155108	0	1	1136	0
chr1	164154308	164155565	MeWo_Garraway.4333	0	.	164154308	164155565	0	1	1257	0
chr1	164162792	164166127	REMC_LuminalBreast.11545	0	.	164162792	164166127	0	1	3335	0
chr1	164162797	164166482	REMC_MyoepithelialBreast.10838	0	.	164162797	164166482	0	1	3685	0
chr1	164162864	164164745	REMC_BreastStem.6097	0	.	164162864	164164745	0	1	1881	0
chr1	164164884	164166188	B_cells_Cheung.20450	0	.	164164884	164166188	0	1	1304	0
chr1	164164905	164166287	MIP101.7802	0	.	164164905	164166287	0	1	1382	0
chr1	164164950	164165439	BT20_Thompson.2779	0	.	164164950	164165439	0	1	489	0
chr1	164165833	164166182	H9_polyA+.5523	0	.	164165833	164166182	0	1	349	0
chr1	164170544	164171209	BT474_Burge_Thompson.3780	0	.	164170544	164171209	0	1	665	0
chr1	164215738	164216918	REMC_MyoepithelialBreast.10843	0	.	164215738	164216918	0	1	1180	0
chr1	164219124	164220150	REMC_MyoepithelialBreast.10844	0	.	164219124	164220150	0	1	1026	0
chr1	164219401	164220428	REMC_LuminalBreast.11548	0	.	164219401	164220428	0	1	1027	0
chr1	164525303	164525723	B_cells_Cheung.20471	0	.	164525303	164525723	0	1	420	0
chr1	165119524	165124698	HIT000257343	0	-	165119524	165124698	0	2	1109,40	0,5134
chr1	165133782	165134748	brain_AmbionMAQC.5366	0	.	165133782	165134748	0	1	966	0
chr1	165135258	165136591	B_Cells_Pritchard.314139	0	.	165135258	165136591	0	1	1333	0
chr1	165135498	165136312	brain_AmbionMAQC.5367	0	.	165135498	165136312	0	1	814	0
chr1	165136663	165137797	brain_AmbionMAQC.5368	0	.	165136663	165137797	0	1	1134	0
chr1	165759806	165762470	REMC_MyoepithelialBreast.10956	0	.	165759806	165762470	0	1	2664	0
chr1	165759820	165762470	REMC_LuminalBreast.11730	0	.	165759820	165762470	0	1	2650	0
chr1	165761546	165762595	REMC_BreastStem.6140	0	.	165761546	165762595	0	1	1049	0
chr1	165822628	165823696	B_cells_Cheung.20562	0	.	165822628	165823696	0	1	1068	0
chr1	165837887	165839509	B_cells_Cheung.20573	0	.	165837887	165839509	0	1	1622	0
chr1	165839797	165853974	B_Cells_Pritchard.316201	0	+	165839797	165853974	0	4	2444,4115,2114,2093	0,3199,9803,12084
chr1	165844880	165849336	B_cells_Cheung.20578	0	.	165844880	165849336	0	1	4456	0
chr1	165857802	165862201	B_cells_Cheung.20878	0	.	165857802	165862201	0	1	4399	0
chr1	165950149	165950682	A549_Myers.7614	0	.	165950149	165950682	0	1	533	0
chr1	165953428	165954061	B_cells_Cheung.20661	0	.	165953428	165954061	0	1	633	0
chr1	166035665	166041541	REMC_MyoepithelialBreast.10927	0	.	166035665	166041541	0	1	5876	0
chr1	166037361	166041590	REMC_LuminalBreast.11863	0	.	166037361	166041590	0	1	4229	0
chr1	166039016	166040797	H1_polyA+.13329	0	.	166039016	166040797	0	1	1781	0
chr1	166042695	166043398	H1_polyA+.13330	0	.	166042695	166043398	0	1	703	0
chr1	166442077	166442613	B_cells_Cheung.20856	0	.	166442077	166442613	0	1	536	0
chr1	166443753	166444202	K562.5671	0	.	166443753	166444202	0	1	449	0
chr1	166443761	166444094	B_cells_Cheung.20858	0	.	166443761	166444094	0	1	333	0
chr1	166445155	166446191	REMC_MyoepithelialBreast.11077	0	.	166445155	166446191	0	1	1036	0
chr1	166447040	166447756	K562.5675	0	.	166447040	166447756	0	1	716	0
chr1	166448047	166450793	K562.5676	0	.	166448047	166450793	0	1	2746	0
chr1	166448897	166450765	B_cells_Cheung.20863	0	.	166448897	166450765	0	1	1868	0
chr1	166480430	166481169	A549_Myers.7657	0	.	166480430	166481169	0	1	739	0
chr1	166483608	166484699	H1_polyA+.13537	0	.	166483608	166484699	0	1	1091	0
chr1	166483631	166484509	MeWo_Garraway.4476	0	.	166483631	166484509	0	1	878	0
chr1	166483634	166484500	BT474_Burge_Thompson.3845	0	.	166483634	166484500	0	1	866	0
chr1	166483635	166484765	B_cells_Cheung.21192	0	.	166483635	166484765	0	1	1130	0
chr1	166483638	166484577	MCF10A_Thompson.2823	0	.	166483638	166484577	0	1	939	0
chr1	166484028	166484519	H9_polyA+.5612	0	.	166484028	166484519	0	1	491	0
chr1	166484139	166484498	CD4_Plagnol_activated.8384	0	.	166484139	166484498	0	1	359	0
chr1	166484499	166489720	prostate_carcinoma.11179	0	+	166484499	166489720	0	3	25,1532,8	0,876,5213
chr1	166484877	166490033	B_cells_Cheung.21191	0	.	166484877	166490033	0	1	5156	0
chr1	166485073	166489342	MCF10A_Thompson.2825	0	.	166485073	166489342	0	1	4269	0
chr1	166485077	166488864	BT474_Burge_Thompson.3844	0	.	166485077	166488864	0	1	3787	0
chr1	166485083	166487547	prostate_normal.6917	0	+	166485083	166487547	0	3	70,1552,466	0,299,1998
chr1	166485085	166487002	HIT000017082	0	+	166485085	166487002	0	1	1917	0
chr1	166485343	166488884	REMC_BreastStem.6308	0	.	166485343	166488884	0	1	3541	0
chr1	166485344	166486917	HeLa_polyA-_Chen.2253	0	.	166485344	166486917	0	1	1573	0
chr1	166485352	166489266	H1_polyA+.13535	0	.	166485352	166489266	0	1	3914	0
chr1	166485356	166489960	MDAMB468_Thompson.3268	0	.	166485356	166489960	0	1	4604	0
chr1	166485358	166488863	MCF7_Burge_Thompson.3763	0	.	166485358	166488863	0	1	3505	0
chr1	166485362	166489010	ZR751_Thompson.3005	0	.	166485362	166489010	0	1	3648	0
chr1	166485362	166487490	brain_AmbionMAQC.5430	0	.	166485362	166487490	0	1	2128	0
chr1	166485364	166489053	MeWo_Garraway.4479	0	.	166485364	166489053	0	1	3689	0
chr1	166485366	166486917	HepG2_Caltech_ENCODE.4384	0	.	166485366	166486917	0	1	1551	0
chr1	166485366	166488859	CD4_Plagnol_resting.8154	0	.	166485366	166488859	0	1	3493	0
chr1	166485367	166489011	K562.5700	0	.	166485367	166489011	0	1	3644	0
chr1	166485367	166489011	K562.5702	0	+	166485367	166489011	0	2	1567,1930	0,1714
chr1	166485368	166487518	MDAMB231_Thompson.2865	0	.	166485368	166487518	0	1	2150	0
chr1	166485368	166486924	T47D_Burge_Thompson.3450	0	.	166485368	166486924	0	1	1556	0
chr1	166485368	166488848	BT20_Thompson.2852	0	.	166485368	166488848	0	1	3480	0
chr1	166485369	166486917	H9_polyA+.5610	0	.	166485369	166486917	0	1	1548	0
chr1	166485369	166489175	melanoma_Garraway_short_term_cultures.8218	0	.	166485369	166489175	0	1	3806	0
chr1	166485372	166488871	CD4_Plagnol_activated.8388	0	+	166485372	166488871	0	2	1517,1914	0,1585
chr1	166485372	166488871	CD4_Plagnol_activated.8387	0	.	166485372	166488871	0	1	3499	0
chr1	166485374	166487110	MeI_Garraway.2288	0	.	166485374	166487110	0	1	1736	0
chr1	166485374	166486915	CD4_Snyder.8465	0	.	166485374	166486915	0	1	1541	0
chr1	166485382	166486886	A549_Myers.7653	0	.	166485382	166486886	0	1	1504	0
chr1	166485395	166486904	NEC_from_H9.9303	0	.	166485395	166486904	0	1	1509	0
chr1	166485638	166486900	MB435_Burge.5267	0	.	166485638	166486900	0	1	1262	0
chr1	166485719	166486640	breast_Burge.4997	0	.	166485719	166486640	0	1	921	0
chr1	166485829	166486237	HeLa_Bartel_WT_12hr.4208	0	.	166485829	166486237	0	1	408	0
chr1	166492899	166493629	REMC_BreastStem.6312	0	.	166492899	166493629	0	1	730	0
chr1	166501757	166503542	B_Cells_Pritchard.317773	0	.	166501757	166503542	0	1	1785	0
chr1	166501950	166502385	REMC_LuminalBreast.11807	0	.	166501950	166502385	0	1	435	0
chr1	166502122	166504572	REMC_MyoepithelialBreast.11093	0	.	166502122	166504572	0	1	2450	0
chr1	166502579	166503583	REMC_LuminalBreast.11808	0	.	166502579	166503583	0	1	1004	0
chr1	166504097	166506849	B_cells_Cheung.21196	0	.	166504097	166506849	0	1	2752	0
chr1	166504883	166505758	H1_polyA+.13541	0	.	166504883	166505758	0	1	875	0
chr1	166506221	166506807	prostate_carcinoma.11186	0	.	166506221	166506807	0	1	586	0
chr1	166508116	166510399	B_cells_Cheung.21199	0	.	166508116	166510399	0	3	243,527,450	0,336,1833
chr1	166514493	166515649	H1_polyA+.13543	0	.	166514493	166515649	0	1	1156	0
chr1	166565775	166566855	REMC_LuminalBreast.11831	0	.	166565775	166566855	0	1	1080	0
chr1	166603019	166603682	B_Cells_Pritchard.318029	0	.	166603019	166603682	0	1	663	0
chr1	166618433	166620115	H1_polyA+.13490	0	.	166618433	166620115	0	1	1682	0
chr1	166620798	166622931	H1_polyA+.13491	0	.	166620798	166622931	0	1	2133	0
chr1	166633541	166635157	H1_polyA+.13495	0	.	166633541	166635157	0	1	1616	0
chr1	166649980	166650335	B_cells_Cheung.20905	0	.	166649980	166650335	0	1	355	0
chr1	166650611	166652417	H1_polyA+.13501	0	.	166650611	166652417	0	1	1806	0
chr1	166651665	166652280	HepG2_Caltech_ENCODE.4403	0	.	166651665	166652280	0	1	615	0
chr1	166652526	166654350	H1_polyA+.13502	0	.	166652526	166654350	0	1	1824	0
chr1	166666426	166667380	H1_polyA+.13509	0	.	166666426	166667380	0	1	954	0
chr1	166668869	166671914	H1_polyA+.13511	0	.	166668869	166671914	0	1	3045	0
chr1	166672623	166674825	H1_polyA+.13512	0	.	166672623	166674825	0	1	2202	0
chr1	166673631	166674504	melanoma_Garraway_short_term_cultures.8233	0	.	166673631	166674504	0	1	873	0
chr1	166698834	166700007	H1_polyA+.13518	0	.	166698834	166700007	0	1	1173	0
chr1	166746055	166746452	H1_rRNA-depleted_UCSD_REMC.10668	0	.	166746055	166746452	0	1	397	0
chr1	166746112	166746725	B_Cells_Pritchard.318451	0	.	166746112	166746725	0	1	613	0
chr1	166794834	166799196	H1_polyA+.13524	0	.	166794834	166799196	0	1	4362	0
chr1	166799273	166803931	HepG2_Caltech_ENCODE.4393	0	.	166799273	166803931	0	1	4658	0
chr1	166799506	166804986	H1_polyA+.13525	0	.	166799506	166804986	0	1	5480	0
chr1	166868545	166886026	pHIT000002920	0	+	166868545	166886026	0	3	111,80,235	0,9538,17246
chr1	166980053	166980550	B_cells_Cheung.20942	0	.	166980053	166980550	0	1	497	0
chr1	167177997	167178336	B_cells_Cheung.20996	0	.	167177997	167178336	0	1	339	0
chr1	167215673	167216339	B_cells_Cheung.21009	0	.	167215673	167216339	0	1	666	0
chr1	167220267	167220573	kidney_Raymond.12384	0	.	167220267	167220573	0	1	306	0
chr1	167223894	167224349	B_cells_Cheung.21019	0	.	167223894	167224349	0	1	455	0
chr1	167227066	167228096	B_Cells_Pritchard.319791	0	.	167227066	167228096	0	1	1030	0
chr1	167227454	167228501	B_cells_Cheung.21021	0	.	167227454	167228501	0	1	1047	0
chr1	167233687	167234329	B_cells_Cheung.21027	0	.	167233687	167234329	0	1	642	0
chr1	167242550	167244716	B_cells_Cheung.21034	0	.	167242550	167244716	0	1	2166	0
chr1	167252359	167253010	B_Cells_Pritchard.319883	0	.	167252359	167253010	0	1	651	0
chr1	167252678	167253121	B_cells_Cheung.21038	0	.	167252678	167253121	0	1	443	0
chr1	167253657	167254158	B_Cells_Pritchard.319889	0	.	167253657	167254158	0	1	501	0
chr1	167254055	167254966	pHIT000098641	0	+	167254055	167254966	0	2	259,314	0,597
chr1	167696977	167697378	skeletal_muscle_Raymond.11848	0	.	167696977	167697378	0	1	401	0
chr1	167723261	167723884	brain_AmbionMAQC.5454	0	.	167723261	167723884	0	1	623	0
chr1	167726512	167736286	REMC_LuminalBreast.11881	0	.	167726512	167736286	0	1	9774	0
chr1	167740267	167741922	REMC_LuminalBreast.11883	0	.	167740267	167741922	0	1	1655	0
chr1	168148484	168150021	REMC_LuminalBreast.11900	0	.	168148484	168150021	0	1	1537	0
chr1	168507169	168519973	Rinn_00000023	0	-	168507169	168519973	0	4	577,976,104,71	0,2127,7424,12733
chr1	168507169	168519973	NR_026957	0	-	168507169	168519973	0	4	577,975,103,70	0,2128,7425,12734
chr1	168507353	168514697	HIT000093080	0	-	168507353	168514697	0	3	393,975,103	0,1944,7241
chr1	168507366	168514697	Rinn_00000676	0	-	168507366	168514697	0	3	380,976,104	0,1930,7227
chr1	168507367	168514697	ENST00000440404	0	-	168507367	168514697	0	3	379,975,103	0,1930,7227
chr1	168507562	168509842	HIT000388597	0	-	168507562	168509842	0	2	184,545	0,1735
chr1	168555964	168585500	pHIT000072166	0	+	168555964	168585500	0	2	262,116	0,29420
chr1	168696427	168698186	melanoma_Garraway_short_term_cultures.8289	0	.	168696427	168698186	0	1	1759	0
chr1	168804870	168806078	REMC_MyoepithelialBreast.11150	0	.	168804870	168806078	0	1	1208	0
chr1	168893877	168896540	B_Cells_Pritchard.323841	0	+	168893877	168896540	0	1	2663	0
chr1	168897929	168898373	B_Cells_Pritchard.323839	0	.	168897929	168898373	0	1	444	0
chr1	168976407	168979726	REMC_BreastStem.6390	0	.	168976407	168979726	0	1	3319	0
chr1	168985397	168986440	REMC_BreastStem.6392	0	.	168985397	168986440	0	1	1043	0
chr1	168989436	168990215	REMC_BreastStem.6393	0	.	168989436	168990215	0	1	779	0
chr1	169091104	169092563	REMC_LuminalBreast.11920	0	.	169091104	169092563	0	1	1459	0
chr1	169844666	169846224	REMC_LuminalBreast.12039	0	.	169844666	169846224	0	1	1558	0
chr1	169845001	169845922	REMC_BreastStem.6420	0	.	169845001	169845922	0	1	921	0
chr1	169845105	169846964	REMC_MyoepithelialBreast.12936	0	.	169845105	169846964	0	1	1859	0
chr1	169859094	169862364	pHIT000002947	0	+	169859094	169862364	0	3	50,138,148	0,509,3122
chr1	169860310	169861120	REMC_MyoepithelialBreast.12939	0	.	169860310	169861120	0	1	810	0
chr1	169860704	169862418	REMC_BreastStem.6422	0	.	169860704	169862418	0	1	1714	0
chr1	169867358	169868646	REMC_LuminalBreast.12041	0	.	169867358	169868646	0	1	1288	0
chr1	169867497	169868735	REMC_MyoepithelialBreast.11192	0	.	169867497	169868735	0	1	1238	0
chr1	169869844	169870149	B_cells_Cheung.21409	0	.	169869844	169870149	0	1	305	0
chr1	169892607	169893778	REMC_LuminalBreast.12044	0	.	169892607	169893778	0	1	1171	0
chr1	169899397	169900570	REMC_MyoepithelialBreast.11204	0	.	169899397	169900570	0	1	1173	0
chr1	169915968	169916727	REMC_BreastStem.6426	0	.	169915968	169916727	0	1	759	0
chr1	169979162	169981098	K562.5824	0	.	169979162	169981098	0	1	1936	0
chr1	169980812	169981175	prostate_carcinoma.11366	0	.	169980812	169981175	0	1	363	0
chr1	170882277	170883329	MIP101.8090	0	.	170882277	170883329	0	1	1052	0
chr1	170933543	170934364	CD4_Plagnol_activated.8555	0	.	170933543	170934364	0	1	821	0
chr1	170934557	170935189	CD4_Plagnol_activated.8556	0	.	170934557	170935189	0	1	632	0
chr1	171406422	171408590	B_cells_Cheung.21554	0	.	171406422	171408590	0	1	2168	0
chr1	171407325	171408475	B_Cells_Pritchard.329023	0	.	171407325	171408475	0	1	1150	0
chr1	171407641	171408420	H1_polyA+.13700	0	.	171407641	171408420	0	1	779	0
chr1	171408664	171409160	B_cells_Cheung.21555	0	.	171408664	171409160	0	1	496	0
chr1	171409216	171409782	B_cells_Cheung.21556	0	.	171409216	171409782	0	1	566	0
chr1	171486508	171487075	B_cells_Cheung.21585	0	.	171486508	171487075	0	1	567	0
chr1	171533287	171533903	B_Cells_Pritchard.329355	0	.	171533287	171533903	0	1	616	0
chr1	171539771	171540158	B_cells_Cheung.21598	0	.	171539771	171540158	0	1	387	0
chr1	171542045	171542772	B_cells_Cheung.21601	0	.	171542045	171542772	0	1	727	0
chr1	171542392	171542814	B_Cells_Pritchard.329397	0	.	171542392	171542814	0	1	422	0
chr1	171545730	171549057	B_cells_Cheung.21605	0	.	171545730	171549057	0	1	3327	0
chr1	171551530	171551950	B_cells_Cheung.21608	0	.	171551530	171551950	0	1	420	0
chr1	171566788	171568218	B_cells_Cheung.21618	0	.	171566788	171568218	0	1	1430	0
chr1	171567039	171567906	H1_polyA+.13709	0	.	171567039	171567906	0	1	867	0
chr1	171567399	171568203	B_Cells_Pritchard.329477	0	.	171567399	171568203	0	1	804	0
chr1	171576044	171576631	B_cells_Cheung.21626	0	.	171576044	171576631	0	1	587	0
chr1	171587877	171588321	B_cells_Cheung.21636	0	.	171587877	171588321	0	1	444	0
chr1	171623592	171647332	B_cells_Cheung.21656	0	-	171623592	171647332	0	3	805,1535,804	0,14292,22936
chr1	171626771	171629438	B_cells_Cheung.21659	0	.	171626771	171629438	0	1	2667	0
chr1	171627842	171631142	H1_polyA+.13719	0	.	171627842	171631142	0	1	3300	0
chr1	171628714	171629483	B_Cells_Pritchard.329683	0	.	171628714	171629483	0	1	769	0
chr1	171629119	171629421	H1_rRNA-depleted_UCSD_REMC.10975	0	.	171629119	171629421	0	1	302	0
chr1	171631202	171634258	B_cells_Cheung.21661	0	.	171631202	171634258	0	1	3056	0
chr1	171631385	171634261	H1_polyA+.13720	0	.	171631385	171634261	0	1	2876	0
chr1	171634431	171638655	H1_polyA+.13721	0	.	171634431	171638655	0	1	4224	0
chr1	171634445	171636853	B_cells_Cheung.21662	0	.	171634445	171636853	0	1	2408	0
chr1	171637270	171638348	MIP101.8111	0	.	171637270	171638348	0	1	1078	0
chr1	171640513	171647629	H1_polyA+.13724	0	.	171640513	171647629	0	1	7116	0
chr1	171640610	171643275	B_cells_Cheung.21665	0	.	171640610	171643275	0	1	2665	0
chr1	171641183	171643192	B_Cells_Pritchard.329717	0	+	171641183	171643192	0	2	1873,105	0,1904
chr1	171645483	171647326	B_Cells_Pritchard.329731	0	.	171645483	171647326	0	1	1843	0
chr1	171645835	171647332	B_cells_Cheung.21657	0	.	171645835	171647332	0	1	1497	0
chr1	171645979	171647060	prostate_carcinoma.11445	0	.	171645979	171647060	0	1	1081	0
chr1	171647873	171652486	H1_polyA+.13726	0	.	171647873	171652486	0	1	4613	0
chr1	171648529	171652532	B_cells_Cheung.21670	0	.	171648529	171652532	0	1	4003	0
chr1	171650510	171662226	B_Cells_Pritchard.329799	0	-	171650510	171662226	0	3	1858,2258,2591	0,2080,9125
chr1	171650941	171652375	prostate_carcinoma.11448	0	.	171650941	171652375	0	1	1434	0
chr1	171651378	171652366	melanoma_Garraway_short_term_cultures.8343	0	.	171651378	171652366	0	1	988	0
chr1	171651949	171652500	CD4_Plagnol_resting.8320	0	.	171651949	171652500	0	1	551	0
chr1	171655004	171660458	H1_polyA+.13725	0	.	171655004	171660458	0	1	5454	0
chr1	171659148	171661148	prostate_carcinoma.11451	0	.	171659148	171661148	0	1	2000	0
chr1	171664764	171675625	H1_polyA+.13731	0	.	171664764	171675625	0	1	10861	0
chr1	171667236	171667765	CD4_Snyder.8724	0	.	171667236	171667765	0	1	529	0
chr1	171667830	171672198	B_cells_Cheung.21679	0	.	171667830	171672198	0	1	4368	0
chr1	171668946	171671054	HepG2_Caltech_ENCODE.4515	0	.	171668946	171671054	0	1	2108	0
chr1	171669460	171671647	MIP101.8122	0	.	171669460	171671647	0	1	2187	0
chr1	171669461	171672197	K562.5870	0	.	171669461	171672197	0	1	2736	0
chr1	171669467	171672195	prostate_carcinoma.11458	0	.	171669467	171672195	0	1	2728	0
chr1	171669490	171671385	prostate_normal.7101	0	.	171669490	171671385	0	1	1895	0
chr1	171669543	171672207	melanoma_Garraway_short_term_cultures.8348	0	.	171669543	171672207	0	1	2664	0
chr1	171669673	171670530	HeLa_polyA+_Chen.4523	0	.	171669673	171670530	0	1	857	0
chr1	171676854	171677216	H1_rRNA-depleted_UCSD_REMC.10981	0	.	171676854	171677216	0	1	362	0
chr1	171695039	171696513	BT474_Burge_Thompson.3922	0	.	171695039	171696513	0	1	1474	0
chr1	171707837	171708764	H1_polyA+.13741	0	.	171707837	171708764	0	1	927	0
chr1	171909000	171915392	H1_polyA+.13757	0	.	171909000	171915392	0	1	6392	0
chr1	171915532	171916672	H1_polyA+.13758	0	.	171915532	171916672	0	1	1140	0
chr1	171918854	171919585	H1_polyA+.13759	0	.	171918854	171919585	0	1	731	0
chr1	171939223	171940044	B_cells_Cheung.21722	0	.	171939223	171940044	0	1	821	0
chr1	171939224	171939664	B_Cells_Pritchard.330473	0	.	171939224	171939664	0	1	440	0
chr1	172030612	172032102	REMC_BreastStem.6476	0	.	172030612	172032102	0	1	1490	0
chr1	172030630	172031629	MeI_Garraway.2326	0	.	172030630	172031629	0	1	999	0
chr1	172030674	172031608	K562.5947	0	.	172030674	172031608	0	1	934	0
chr1	172030704	172031640	CD4_Plagnol_activated.8572	0	.	172030704	172031640	0	1	936	0
chr1	172030705	172031508	HepG2_Caltech_ENCODE.4524	0	.	172030705	172031508	0	1	803	0
chr1	172030727	172031437	HeLa_polyA+_Chen.4538	0	.	172030727	172031437	0	1	710	0
chr1	172030779	172031650	melanoma_Garraway_short_term_cultures.8382	0	.	172030779	172031650	0	1	871	0
chr1	172030801	172031585	MeWo_Garraway.4468	0	.	172030801	172031585	0	1	784	0
chr1	172030858	172032054	T47D_Burge_Thompson.3519	0	.	172030858	172032054	0	1	1196	0
chr1	172030859	172031536	BT20_Thompson.2880	0	.	172030859	172031536	0	1	677	0
chr1	172030863	172031646	CD4_Plagnol_resting.8333	0	.	172030863	172031646	0	1	783	0
chr1	172030869	172031546	MDAMB231_Thompson.2923	0	.	172030869	172031546	0	1	677	0
chr1	172031568	172033365	HepG2_Caltech_ENCODE.4525	0	.	172031568	172033365	0	1	1797	0
chr1	172032465	172032941	H1_rRNA-depleted_UCSD_REMC.11019	0	.	172032465	172032941	0	1	476	0
chr1	172033450	172034230	HepG2_Caltech_ENCODE.4526	0	.	172033450	172034230	0	1	780	0
chr1	172095390	172097073	MCF7_Burge_Thompson.3952	0	.	172095390	172097073	0	1	1683	0
chr1	172095663	172097105	melanoma_Garraway_short_term_cultures.8394	0	.	172095663	172097105	0	1	1442	0
chr1	172096397	172097163	K562.5951	0	.	172096397	172097163	0	1	766	0
chr1	172096521	172098986	HeLa_polyA+_Chen.4543	0	.	172096521	172098986	0	1	2465	0
chr1	172097170	172097834	H9_polyA-_Chen.1836	0	.	172097170	172097834	0	1	664	0
chr1	172097548	172098119	HeLa_polyA-_Chen.2310	0	.	172097548	172098119	0	1	571	0
chr1	172157686	172159880	REMC_LuminalBreast.12656	0	.	172157686	172159880	0	1	2194	0
chr1	172159215	172159780	B_cells_Cheung.21776	0	.	172159215	172159780	0	1	565	0
chr1	172159467	172160102	REMC_MyoepithelialBreast.11384	0	.	172159467	172160102	0	1	635	0
chr1	172159500	172160118	B_Cells_Pritchard.330789	0	+	172159500	172160118	0	1	618	0
chr1	172159638	172160412	liver_polyA+.19204	0	.	172159638	172160412	0	1	774	0
chr1	172162545	172163681	REMC_LuminalBreast.12658	0	.	172162545	172163681	0	1	1136	0
chr1	172162645	172163549	REMC_MyoepithelialBreast.11386	0	.	172162645	172163549	0	1	904	0
chr1	172162679	172163695	melanoma_Garraway_short_term_cultures.8406	0	.	172162679	172163695	0	1	1016	0
chr1	172162772	172163383	REMC_BreastStem.6543	0	.	172162772	172163383	0	1	611	0
chr1	172164040	172165530	B_cells_Cheung.21778	0	.	172164040	172165530	0	1	1490	0
chr1	172164135	172165414	melanoma_Garraway_short_term_cultures.8407	0	.	172164135	172165414	0	1	1279	0
chr1	172164146	172164831	liver_polyA+.19209	0	.	172164146	172164831	0	1	685	0
chr1	172164211	172165589	CD4_Plagnol_resting.8377	0	.	172164211	172165589	0	1	1378	0
chr1	172164292	172165446	REMC_MyoepithelialBreast.11387	0	.	172164292	172165446	0	1	1154	0
chr1	172164437	172164806	CD4_Plagnol_activated.8601	0	.	172164437	172164806	0	1	369	0
chr1	172258190	172258786	prostate_carcinoma.11516	0	.	172258190	172258786	0	1	596	0
chr1	172258209	172261231	REMC_MyoepithelialBreast.11379	0	.	172258209	172261231	0	1	3022	0
chr1	172258308	172259322	REMC_BreastStem.6497	0	.	172258308	172259322	0	1	1014	0
chr1	172361067	172361489	B_cells_Cheung.22631	0	.	172361067	172361489	0	1	422	0
chr1	172365997	172366600	B_cells_Cheung.22632	0	.	172365997	172366600	0	1	603	0
chr1	172366721	172367126	B_cells_Cheung.22633	0	.	172366721	172367126	0	1	405	0
chr1	172368606	172369208	B_cells_Cheung.22635	0	.	172368606	172369208	0	1	602	0
chr1	172373532	172374358	B_cells_Cheung.22639	0	.	172373532	172374358	0	1	826	0
chr1	172374985	172376657	B_cells_Cheung.22640	0	.	172374985	172376657	0	1	1672	0
chr1	172392030	172392918	B_cells_Cheung.22650	0	.	172392030	172392918	0	1	888	0
chr1	173271332	173272617	REMC_BreastStem.6509	0	.	173271332	173272617	0	1	1285	0
chr1	173271377	173272575	B_Cells_Pritchard.333665	0	.	173271377	173272575	0	1	1198	0
chr1	173271445	173272552	REMC_MyoepithelialBreast.11418	0	.	173271445	173272552	0	1	1107	0
chr1	173550955	173556553	HIT000000226	0	+	173550955	173556553	0	1	5598	0
chr1	174100522	174102290	REMC_LuminalBreast.12257	0	.	174100522	174102290	0	1	1768	0
chr1	174100747	174102645	MIP101.8236	0	.	174100747	174102645	0	1	1898	0
chr1	174103863	174105706	REMC_MyoepithelialBreast.11424	0	.	174103863	174105706	0	1	1843	0
chr1	174133552	174134303	REMC_MyoepithelialBreast.11425	0	.	174133552	174134303	0	1	751	0
chr1	174133864	174134677	REMC_LuminalBreast.12263	0	.	174133864	174134677	0	1	813	0
chr1	174139777	174144436	MIP101.8241	0	-	174139777	174144436	0	2	1118,131	0,4528
chr1	174139777	174141006	MIP101.8240	0	.	174139777	174141006	0	1	1229	0
chr1	174139885	174144534	REMC_MyoepithelialBreast.11427	0	-	174139885	174144534	0	2	1010,229	0,4420
chr1	174140517	174144532	REMC_BreastStem.6518	0	-	174140517	174144532	0	2	378,227	0,3788
chr1	174140520	174156272	ENST00000426575	0	-	174140520	174156272	0	3	375,224,58	0,3785,15694
chr1	174140547	174140896	CD4_Plagnol_activated.8713	0	.	174140547	174140896	0	1	349	0
chr1	174140562	174140890	prostate_normal.7177	0	.	174140562	174140890	0	1	328	0
chr1	174142905	174143241	B_cells_Cheung.21856	0	.	174142905	174143241	0	1	336	0
chr1	174142915	174143411	REMC_LuminalBreast.12266	0	.	174142915	174143411	0	1	496	0
chr1	174151866	174153234	MIP101.8245	0	.	174151866	174153234	0	1	1368	0
chr1	174159497	174162787	REMC_MyoepithelialBreast.11437	0	.	174159497	174162787	0	1	3290	0
chr1	174160044	174162801	REMC_BreastStem.6522	0	.	174160044	174162801	0	1	2757	0
chr1	174162045	174162726	HeLa_polyA+_Chen.4584	0	.	174162045	174162726	0	1	681	0
chr1	174162166	174162732	H1_polyA+.13872	0	.	174162166	174162732	0	1	566	0
chr1	174162323	174162724	B_cells_Cheung.21873	0	.	174162323	174162724	0	1	401	0
chr1	174162324	174162720	B_Cells_Pritchard.335579	0	+	174162324	174162720	0	1	396	0
chr1	174167106	174179398	REMC_MyoepithelialBreast.11440	0	.	174167106	174179398	0	1	12292	0
chr1	174168137	174168798	MIP101.8258	0	.	174168137	174168798	0	1	661	0
chr1	174170803	174173543	B_cells_Cheung.21883	0	.	174170803	174173543	0	1	2740	0
chr1	174170815	174171886	CD4_Plagnol_resting.8464	0	.	174170815	174171886	0	1	1071	0
chr1	174170819	174171669	CD4_Plagnol_activated.8715	0	.	174170819	174171669	0	1	850	0
chr1	174170996	174173540	H1_polyA+.13876	0	.	174170996	174173540	0	1	2544	0
chr1	174171051	174173537	REMC_BreastStem.6526	0	.	174171051	174173537	0	1	2486	0
chr1	174172519	174174017	B_Cells_Pritchard.335639	0	-	174172519	174174017	0	5	90,72,126,201,71	0,146,369,546,1427
chr1	174445223	174446535	H1_polyA+.13912	0	.	174445223	174446535	0	1	1312	0
chr1	174451013	174451658	B_Cells_Pritchard.336527	0	.	174451013	174451658	0	1	645	0
chr1	174453318	174454408	B_Cells_Pritchard.336535	0	.	174453318	174454408	0	1	1090	0
chr1	174464892	174466564	B_Cells_Pritchard.336579	0	.	174464892	174466564	0	1	1672	0
chr1	175628391	175629542	B_cells_Cheung.22057	0	.	175628391	175629542	0	1	1151	0
chr1	175628653	175629553	B_Cells_Pritchard.339203	0	.	175628653	175629553	0	1	900	0
chr1	175629044	175812707	Rinn_00000692	0	-	175629044	175812707	0	3	503,58,240	0,180440,183423
chr1	175629045	175812707	ENST00000438575	0	-	175629045	175812707	0	3	502,57,239	0,180440,183423
chr1	175629437	175833467	ENST00000458070	0	-	175629437	175833467	0	4	110,57,240,139	0,180048,183031,203891
chr1	175769444	175769910	B_Cells_Pritchard.339569	0	.	175769444	175769910	0	1	466	0
chr1	176290839	176297521	REMC_MyoepithelialBreast.11680	0	+	176290839	176297521	0	2	422,409	0,6273
chr1	176305010	176306305	REMC_MyoepithelialBreast.11682	0	.	176305010	176306305	0	1	1295	0
chr1	176309387	176310583	REMC_MyoepithelialBreast.11684	0	.	176309387	176310583	0	1	1196	0
chr1	176317618	176320158	REMC_LuminalBreast.12309	0	.	176317618	176320158	0	1	2540	0
chr1	176317618	176320246	REMC_MyoepithelialBreast.11689	0	.	176317618	176320246	0	1	2628	0
chr1	176323650	176326649	REMC_MyoepithelialBreast.11691	0	.	176323650	176326649	0	1	2999	0
chr1	176323735	176326647	REMC_LuminalBreast.12311	0	.	176323735	176326647	0	1	2912	0
chr1	176327266	176329358	HIT000044337	0	-	176327266	176329358	0	2	1904,67	0,2025
chr1	176327266	176329358	ENST00000419458	0	-	176327266	176329358	0	2	1904,67	0,2025
chr1	176716442	176719702	H1_polyA+.14024	0	.	176716442	176719702	0	1	3260	0
chr1	176716537	176720176	melanoma_Garraway_short_term_cultures.8570	0	.	176716537	176720176	0	1	3639	0
chr1	176718588	176719897	prostate_carcinoma.11664	0	.	176718588	176719897	0	1	1309	0
chr1	176718840	176719723	brain_AmbionMAQC.5635	0	.	176718840	176719723	0	1	883	0
chr1	176719070	176719604	prostate_normal.7225	0	.	176719070	176719604	0	1	534	0
chr1	176719372	176719905	MDAMB468_Thompson.3386	0	.	176719372	176719905	0	1	533	0
chr1	176720438	176722303	melanoma_Garraway_short_term_cultures.8571	0	.	176720438	176722303	0	1	1865	0
chr1	176721754	176722886	B_cells_Cheung.22125	0	.	176721754	176722886	0	1	1132	0
chr1	176722234	176722731	B_Cells_Pritchard.341831	0	.	176722234	176722731	0	1	497	0
chr1	176722863	176726023	REMC_MyoepithelialBreast.11836	0	.	176722863	176726023	0	1	3160	0
chr1	176723011	176724422	REMC_LuminalBreast.12321	0	.	176723011	176724422	0	1	1411	0
chr1	176723754	176724066	B_cells_Cheung.22126	0	.	176723754	176724066	0	1	312	0
chr1	176724260	176726193	B_cells_Cheung.22127	0	-	176724260	176726193	0	2	97,364	0,1569
chr1	176725806	176726193	B_cells_Cheung.22128	0	.	176725806	176726193	0	1	387	0
chr1	176726043	176727532	REMC_LuminalBreast.12322	0	.	176726043	176727532	0	1	1489	0
chr1	176726133	176727631	REMC_MyoepithelialBreast.11837	0	.	176726133	176727631	0	1	1498	0
chr1	176726429	176727535	REMC_BreastStem.6573	0	.	176726429	176727535	0	1	1106	0
chr1	176726626	176727489	melanoma_Garraway_short_term_cultures.8572	0	.	176726626	176727489	0	1	863	0
chr1	176729253	176729582	B_Cells_Pritchard.341849	0	.	176729253	176729582	0	1	329	0
chr1	176731202	176733205	REMC_LuminalBreast.12325	0	.	176731202	176733205	0	1	2003	0
chr1	176734106	176735330	REMC_LuminalBreast.12326	0	.	176734106	176735330	0	1	1224	0
chr1	176735643	176738489	REMC_LuminalBreast.12327	0	.	176735643	176738489	0	1	2846	0
chr1	176735695	176738232	REMC_MyoepithelialBreast.11839	0	.	176735695	176738232	0	1	2537	0
chr1	176738417	176739762	REMC_MyoepithelialBreast.11840	0	.	176738417	176739762	0	1	1345	0
chr1	176741824	176746113	REMC_LuminalBreast.12331	0	.	176741824	176746113	0	1	4289	0
chr1	176784979	176787700	H1_polyA+.14028	0	.	176784979	176787700	0	1	2721	0
chr1	176785008	176787541	B_cells_Cheung.22134	0	.	176785008	176787541	0	1	2533	0
chr1	176785742	176786955	REMC_MyoepithelialBreast.11701	0	.	176785742	176786955	0	1	1213	0
chr1	176785815	176787496	melanoma_Garraway_short_term_cultures.8578	0	.	176785815	176787496	0	1	1681	0
chr1	176785897	176787434	prostate_carcinoma.11674	0	.	176785897	176787434	0	1	1537	0
chr1	176786141	176787482	HeLa_polyA+_Chen.4609	0	.	176786141	176787482	0	1	1341	0
chr1	176786173	176786842	brain_AmbionMAQC.5645	0	.	176786173	176786842	0	1	669	0
chr1	176786302	176787003	MIP101.8326	0	.	176786302	176787003	0	1	701	0
chr1	176786427	176786930	MCF7_Burge_Thompson.3936	0	.	176786427	176786930	0	1	503	0
chr1	176786542	176786896	H1_rRNA-depleted_UCSD_REMC.11197	0	.	176786542	176786896	0	1	354	0
chr1	176786559	176787492	liver_polyA+.16664	0	.	176786559	176787492	0	1	933	0
chr1	176786585	176786941	MB435_Burge.5415	0	.	176786585	176786941	0	1	356	0
chr1	176786646	176787427	prostate_normal.7229	0	.	176786646	176787427	0	1	781	0
chr1	176786894	176787488	brain_AmbionMAQC.5646	0	.	176786894	176787488	0	1	594	0
chr1	176786918	176787492	kidney_Gilad.11192	0	.	176786918	176787492	0	1	574	0
chr1	176786954	176787601	MeWo_Garraway.4586	0	.	176786954	176787601	0	1	647	0
chr1	176787884	176788958	H1_polyA+.14029	0	.	176787884	176788958	0	1	1074	0
chr1	176798272	176799586	B_Cells_Pritchard.342157	0	-	176798272	176799586	0	1	1314	0
chr1	176798272	176799555	B_cells_Cheung.22143	0	.	176798272	176799555	0	1	1283	0
chr1	176801339	176801876	B_cells_Cheung.22145	0	.	176801339	176801876	0	1	537	0
chr1	176801389	176801784	B_Cells_Pritchard.341943	0	.	176801389	176801784	0	1	395	0
chr1	176801928	176803617	B_cells_Cheung.22146	0	.	176801928	176803617	0	1	1689	0
chr1	176801953	176802675	B_Cells_Pritchard.341945	0	.	176801953	176802675	0	1	722	0
chr1	176802123	176802658	H1_polyA+.14031	0	.	176802123	176802658	0	1	535	0
chr1	176816121	176817189	B_Cells_Pritchard.341999	0	.	176816121	176817189	0	1	1068	0
chr1	176820671	176822001	H1_polyA+.14036	0	.	176820671	176822001	0	1	1330	0
chr1	176821158	176821640	B_cells_Cheung.22164	0	.	176821158	176821640	0	1	482	0
chr1	176833722	176834536	H1_polyA+.14038	0	.	176833722	176834536	0	1	814	0
chr1	176840283	176841269	B_cells_Cheung.22173	0	.	176840283	176841269	0	1	986	0
chr1	176840294	176841001	H1_polyA+.14042	0	.	176840294	176841001	0	1	707	0
chr1	176840323	176840991	melanoma_Garraway_short_term_cultures.8583	0	.	176840323	176840991	0	1	668	0
chr1	176840328	176840676	B_Cells_Pritchard.342153	0	.	176840328	176840676	0	1	348	0
chr1	176841417	176844103	B_cells_Cheung.22174	0	.	176841417	176844103	0	1	2686	0
chr1	176841542	176844078	B_Cells_Pritchard.342225	0	.	176841542	176844078	0	1	2536	0
chr1	176846042	176846852	B_Cells_Pritchard.342245	0	.	176846042	176846852	0	1	810	0
chr1	176846064	176847039	B_cells_Cheung.22178	0	.	176846064	176847039	0	1	975	0
chr1	176860450	176861144	melanoma_Garraway_short_term_cultures.8587	0	.	176860450	176861144	0	1	694	0
chr1	176860523	176861167	prostate_carcinoma.11676	0	.	176860523	176861167	0	1	644	0
chr1	176861335	176862564	B_cells_Cheung.22189	0	.	176861335	176862564	0	1	1229	0
chr1	176861399	176862754	H1_polyA+.14048	0	.	176861399	176862754	0	1	1355	0
chr1	176861518	176862564	prostate_carcinoma.11675	0	.	176861518	176862564	0	1	1046	0
chr1	176866744	176867148	B_cells_Cheung.22194	0	.	176866744	176867148	0	1	404	0
chr1	176870291	176870894	H1_polyA+.14051	0	.	176870291	176870894	0	1	603	0
chr1	176882367	176883449	H1_polyA+.14054	0	.	176882367	176883449	0	1	1082	0
chr1	176903826	176904818	B_Cells_Pritchard.342541	0	-	176903826	176904818	0	1	992	0
chr1	176903951	176904489	B_cells_Cheung.22209	0	.	176903951	176904489	0	1	538	0
chr1	176907115	176908827	B_cells_Cheung.22211	0	.	176907115	176908827	0	1	1712	0
chr1	176907123	176916675	B_Cells_Pritchard.342601	0	+	176907123	176916675	0	5	1882,1008,1390,471,367	0,4075,5132,6594,9185
chr1	176907123	176913635	B_Cells_Pritchard.342603	0	-	176907123	176913635	0	3	1727,808,1546	0,3954,4966
chr1	176912327	176913637	B_cells_Cheung.22214	0	.	176912327	176913637	0	1	1310	0
chr1	176914014	176915012	B_cells_Cheung.22215	0	.	176914014	176915012	0	1	998	0
chr1	176914467	176915507	melanoma_Garraway_short_term_cultures.8595	0	.	176914467	176915507	0	1	1040	0
chr1	176943294	176950018	B_Cells_Pritchard.342711	0	-	176943294	176950018	0	4	664,1987,69,1503	0,869,4943,5221
chr1	177174312	177174650	B_Cells_Pritchard.343177	0	.	177174312	177174650	0	1	338	0
chr1	177176792	177177850	REMC_LuminalBreast.12367	0	.	177176792	177177850	0	1	1058	0
chr1	177238590	177239090	A549_Myers.8034	0	.	177238590	177239090	0	1	500	0
chr1	178052970	178053886	REMC_BreastStem.6638	0	.	178052970	178053886	0	1	916	0
chr1	178054696	178073456	REMC_MyoepithelialBreast.11948	0	-	178054696	178073456	0	5	1511,136,961,1421,1704	0,3680,6163,9456,17056
chr1	178055586	178072433	REMC_BreastStem.6639	0	-	178055586	178072433	0	4	621,1833,1421,681	0,5418,8566,16166
chr1	178057659	178058683	REMC_LuminalBreast.12505	0	.	178057659	178058683	0	1	1024	0
chr1	178060262	178072851	REMC_LuminalBreast.12507	0	-	178060262	178072851	0	2	5311,1295	0,11294
chr1	178069331	178072433	REMC_BreastStem.6640	0	.	178069331	178072433	0	1	3102	0
chr1	178069528	178072851	REMC_LuminalBreast.12508	0	.	178069528	178072851	0	1	3323	0
chr1	178071400	178072125	K562.6071	0	.	178071400	178072125	0	1	725	0
chr1	178165717	178176607	REMC_MyoepithelialBreast.11959	0	.	178165717	178176607	0	1	10890	0
chr1	178168266	178176580	REMC_BreastStem.6712	0	.	178168266	178176580	0	1	8314	0
chr1	178168369	178176697	REMC_LuminalBreast.12519	0	.	178168369	178176697	0	1	8328	0
chr1	178179520	178180961	REMC_BreastStem.6714	0	.	178179520	178180961	0	1	1441	0
chr1	178179522	178180873	REMC_MyoepithelialBreast.11962	0	.	178179522	178180873	0	1	1351	0
chr1	178180020	178180980	REMC_LuminalBreast.12522	0	.	178180020	178180980	0	1	960	0
chr1	178187817	178189201	REMC_LuminalBreast.12523	0	.	178187817	178189201	0	1	1384	0
chr1	178352474	178353939	B_Cells_Pritchard.346247	0	.	178352474	178353939	0	1	1465	0
chr1	178353219	178353941	B_cells_Cheung.22456	0	.	178353219	178353941	0	1	722	0
chr1	178450837	178455508	REMC_LuminalBreast.12549	0	.	178450837	178455508	0	1	4671	0
chr1	178451540	178452634	REMC_MyoepithelialBreast.11851	0	.	178451540	178452634	0	1	1094	0
chr1	178455662	178462406	REMC_LuminalBreast.12550	0	.	178455662	178462406	0	1	6744	0
chr1	178464476	178464817	A549_Myers.8076	0	.	178464476	178464817	0	1	341	0
chr1	178794731	178802277	Rinn_00000058	0	+	178794731	178802277	0	3	83,142,1269	0,3230,6277
chr1	178797001	178802257	Rinn_00001211	0	+	178797001	178802257	0	3	450,142,1249	0,960,4007
chr1	178800930	178802048	MB435_Burge.5501	0	.	178800930	178802048	0	1	1118	0
chr1	178800936	178802186	melanoma_Garraway_short_term_cultures.8704	0	.	178800936	178802186	0	1	1250	0
chr1	179127594	179128413	melanoma_Garraway_short_term_cultures.8713	0	.	179127594	179128413	0	1	819	0
chr1	179127644	179128889	B_Cells_Pritchard.348365	0	.	179127644	179128889	0	1	1245	0
chr1	179134462	179135789	prostate_carcinoma.11861	0	.	179134462	179135789	0	1	1327	0
chr1	179134557	179135970	B_Cells_Pritchard.348375	0	.	179134557	179135970	0	1	1413	0
chr1	179134652	179136518	H1_polyA+.14349	0	.	179134652	179136518	0	1	1866	0
chr1	179134717	179135396	B_cells_Cheung.22582	0	.	179134717	179135396	0	1	679	0
chr1	179140858	179143091	REMC_LuminalBreast.12902	0	.	179140858	179143091	0	1	2233	0
chr1	179142258	179142722	B_Cells_Pritchard.348401	0	.	179142258	179142722	0	1	464	0
chr1	179142342	179142682	A549_Myers.8128	0	.	179142342	179142682	0	1	340	0
chr1	179144086	179144502	MCF7_Burge_Thompson.3989	0	.	179144086	179144502	0	1	416	0
chr1	179328760	179367621	pHIT000072614	0	-	179328760	179367621	0	4	62,135,119,128	0,13107,22247,38733
chr1	179329334	179336414	B_cells_Cheung.22911	0	.	179329334	179336414	0	1	7080	0
chr1	179329503	179378206	REMC_MyoepithelialBreast.12003	0	+	179329503	179378206	0	2	2218,242	0,48461
chr1	179329670	179336408	B_Cells_Pritchard.348653	0	+	179329670	179336408	0	2	213,5271	0,1467
chr1	179330247	179367621	pHIT000003034	0	-	179330247	179367621	0	5	15,44,135,119,128	0,7666,11620,20760,37246
chr1	179332463	179337710	REMC_BreastStem.6774	0	.	179332463	179337710	0	1	5247	0
chr1	179332563	179337859	REMC_MyoepithelialBreast.12005	0	.	179332563	179337859	0	1	5296	0
chr1	179334459	179341629	A549_Myers.8188	0	-	179334459	179341629	0	2	26,1107	0,6063
chr1	179335538	179338839	REMC_LuminalBreast.12757	0	.	179335538	179338839	0	1	3301	0
chr1	179336468	179337140	B_cells_Cheung.22912	0	.	179336468	179337140	0	1	672	0
chr1	179336540	179338155	B_Cells_Pritchard.348671	0	.	179336540	179338155	0	1	1615	0
chr1	179337913	179367621	pHIT000003035	0	-	179337913	179367621	0	4	44,135,119,128	0,3954,13094,29580
chr1	179338512	179341178	B_Cells_Pritchard.348675	0	.	179338512	179341178	0	1	2666	0
chr1	179340264	179341041	prostate_normal.7361	0	.	179340264	179341041	0	1	777	0
chr1	179344090	179345457	REMC_LuminalBreast.12759	0	.	179344090	179345457	0	1	1367	0
chr1	179347349	179367988	B_Cells_Pritchard.348703	0	-	179347349	179367988	0	2	85,1142	0,19497
chr1	179348070	179349334	REMC_MyoepithelialBreast.12007	0	.	179348070	179349334	0	1	1264	0
chr1	179348301	179349504	REMC_BreastStem.6777	0	.	179348301	179349504	0	1	1203	0
chr1	179349611	179351280	REMC_BreastStem.6778	0	.	179349611	179351280	0	1	1669	0
chr1	179349929	179351147	REMC_MyoepithelialBreast.12008	0	.	179349929	179351147	0	1	1218	0
chr1	179354554	179356082	REMC_LuminalBreast.12762	0	.	179354554	179356082	0	1	1528	0
chr1	179355117	179355527	A549_Myers.8193	0	.	179355117	179355527	0	1	410	0
chr1	179357985	179359631	REMC_BreastStem.6782	0	.	179357985	179359631	0	1	1646	0
chr1	179358152	179359636	REMC_MyoepithelialBreast.12009	0	.	179358152	179359636	0	1	1484	0
chr1	179359778	179361559	REMC_BreastStem.6783	0	.	179359778	179361559	0	1	1781	0
chr1	179363580	179366032	B_cells_Cheung.22919	0	+	179363580	179366032	0	2	1449,667	0,1785
chr1	179363580	179365265	B_cells_Cheung.22920	0	.	179363580	179365265	0	1	1685	0
chr1	179364565	179365203	ZR751_Thompson.3201	0	.	179364565	179365203	0	1	638	0
chr1	179365970	179366377	A549_Myers.8196	0	.	179365970	179366377	0	1	407	0
chr1	179366089	179412466	B_cells_Cheung.22972	0	+	179366089	179412466	0	3	1844,82,1371	0,13725,45006
chr1	179368544	179370208	B_Cells_Pritchard.348711	0	.	179368544	179370208	0	1	1664	0
chr1	179368956	179369691	REMC_BreastStem.6784	0	.	179368956	179369691	0	1	735	0
chr1	179370662	179371131	A549_Myers.8200	0	.	179370662	179371131	0	1	469	0
chr1	179371626	179372843	REMC_LuminalBreast.12764	0	.	179371626	179372843	0	1	1217	0
chr1	179371722	179373220	REMC_BreastStem.6785	0	.	179371722	179373220	0	1	1498	0
chr1	179371912	179372581	melanoma_Garraway_short_term_cultures.8752	0	.	179371912	179372581	0	1	669	0
chr1	179371948	179372595	REMC_MyoepithelialBreast.12010	0	.	179371948	179372595	0	1	647	0
chr1	179373051	179381436	B_Cells_Pritchard.348717	0	+	179373051	179381436	0	2	131,589	0,7796
chr1	179375299	179378504	pHIT000072615	0	+	179375299	179378504	0	3	82,143,228	0,2665,2977
chr1	179383416	179384093	B_Cells_Pritchard.348763	0	.	179383416	179384093	0	1	677	0
chr1	179393395	179396035	B_Cells_Pritchard.348805	0	.	179393395	179396035	0	1	2640	0
chr1	179408743	179409716	B_Cells_Pritchard.348853	0	.	179408743	179409716	0	1	973	0
chr1	179410242	179417967	ENST00000435023	0	+	179410242	179417967	0	3	92,130,320	0,853,7405
chr1	179410242	179417978	HIT000095757	0	+	179410242	179417978	0	3	92,130,331	0,853,7405
chr1	179410632	179418060	B_Cells_Pritchard.348859	0	+	179410632	179418060	0	4	1819,2224,2103,936	0,2029,4389,6492
chr1	179412522	179419529	B_cells_Cheung.22973	0	.	179412522	179419529	0	1	7007	0
chr1	179412533	179418060	B_Cells_Pritchard.348861	0	-	179412533	179418060	0	2	65,5399	0,128
chr1	179419630	179421877	B_cells_Cheung.22987	0	.	179419630	179421877	0	1	2247	0
chr1	179420270	179421706	B_Cells_Pritchard.348869	0	.	179420270	179421706	0	1	1436	0
chr1	179425213	179426181	B_cells_Cheung.22991	0	.	179425213	179426181	0	1	968	0
chr1	179426236	179427125	B_cells_Cheung.22992	0	.	179426236	179427125	0	1	889	0
chr1	179430379	179430832	B_cells_Cheung.22994	0	.	179430379	179430832	0	1	453	0
chr1	179441650	179442811	B_Cells_Pritchard.348939	0	.	179441650	179442811	0	1	1161	0
chr1	179441756	179442580	B_cells_Cheung.23010	0	.	179441756	179442580	0	1	824	0
chr1	179450992	179452401	B_cells_Cheung.22927	0	.	179450992	179452401	0	1	1409	0
chr1	179451288	179451649	B_Cells_Pritchard.348965	0	.	179451288	179451649	0	1	361	0
chr1	179453056	179454661	B_cells_Cheung.22929	0	.	179453056	179454661	0	1	1605	0
chr1	179458408	179459013	B_cells_Cheung.22934	0	.	179458408	179459013	0	1	605	0
chr1	179459094	179459824	B_cells_Cheung.22935	0	.	179459094	179459824	0	1	730	0
chr1	179465657	179466389	B_Cells_Pritchard.349013	0	.	179465657	179466389	0	1	732	0
chr1	179465750	179467605	B_cells_Cheung.22940	0	.	179465750	179467605	0	1	1855	0
chr1	179479565	179481920	B_cells_Cheung.22946	0	.	179479565	179481920	0	1	2355	0
chr1	179479867	179480520	B_Cells_Pritchard.349071	0	.	179479867	179480520	0	1	653	0
chr1	179487522	179487899	B_cells_Cheung.22947	0	.	179487522	179487899	0	1	377	0
chr1	179491120	179496890	B_cells_Cheung.22951	0	.	179491120	179496890	0	1	5770	0
chr1	179497829	179499030	B_cells_Cheung.22953	0	.	179497829	179499030	0	1	1201	0
chr1	179497912	179499508	B_Cells_Pritchard.349131	0	.	179497912	179499508	0	1	1596	0
chr1	179499030	179500626	B_cells_Cheung.22954	0	.	179499030	179500626	0	1	1596	0
chr1	179534334	179535500	B_cells_Cheung.22968	0	.	179534334	179535500	0	1	1166	0
chr1	180171781	180172357	B_Cells_Pritchard.350883	0	.	180171781	180172357	0	1	576	0
chr1	180239480	180239969	B_Cells_Pritchard.351025	0	.	180239480	180239969	0	1	489	0
chr1	180254325	180256341	H1_polyA+.14397	0	.	180254325	180256341	0	1	2016	0
chr1	180255142	180255866	B_Cells_Pritchard.351071	0	.	180255142	180255866	0	1	724	0
chr1	180255430	180255911	B_cells_Cheung.23047	0	.	180255430	180255911	0	1	481	0
chr1	180263433	180265380	REMC_MyoepithelialBreast.12011	0	.	180263433	180265380	0	1	1947	0
chr1	180263891	180265414	B_cells_Cheung.23054	0	.	180263891	180265414	0	1	1523	0
chr1	180264115	180265403	MIP101.8469	0	.	180264115	180265403	0	1	1288	0
chr1	180264146	180265396	B_Cells_Pritchard.351107	0	.	180264146	180265396	0	1	1250	0
chr1	180264181	180265401	H1_polyA+.14400	0	.	180264181	180265401	0	1	1220	0
chr1	180264276	180265396	prostate_carcinoma.11874	0	.	180264276	180265396	0	1	1120	0
chr1	180264374	180265333	prostate_normal.7362	0	.	180264374	180265333	0	1	959	0
chr1	180281837	180284910	HepG2_Caltech_ENCODE.4680	0	.	180281837	180284910	0	1	3073	0
chr1	180281873	180288980	H1_polyA+.14406	0	.	180281873	180288980	0	1	7107	0
chr1	180284397	180285083	MIP101.8473	0	.	180284397	180285083	0	1	686	0
chr1	180321770	180322213	A549_Myers.8214	0	.	180321770	180322213	0	1	443	0
chr1	180322138	180322487	B_Cells_Pritchard.351263	0	.	180322138	180322487	0	1	349	0
chr1	180325037	180325866	prostate_carcinoma.11877	0	.	180325037	180325866	0	1	829	0
chr1	180325100	180325691	B_cells_Cheung.23058	0	.	180325100	180325691	0	1	591	0
chr1	180325117	180325865	B_Cells_Pritchard.351275	0	.	180325117	180325865	0	1	748	0
chr1	180398495	180399506	REMC_LuminalBreast.12769	0	.	180398495	180399506	0	1	1011	0
chr1	180493550	180493983	kidney_Gilad.11387	0	.	180493550	180493983	0	1	433	0
chr1	180493550	180493983	liver_polyA+.16997	0	.	180493550	180493983	0	1	433	0
chr1	180493657	180494042	B_Cells_Pritchard.351745	0	.	180493657	180494042	0	1	385	0
chr1	180526516	180528332	REMC_LuminalBreast.12771	0	.	180526516	180528332	0	1	1816	0
chr1	180551728	180553326	REMC_LuminalBreast.12776	0	.	180551728	180553326	0	1	1598	0
chr1	180583223	180584284	REMC_LuminalBreast.12779	0	.	180583223	180584284	0	1	1061	0
chr1	180586609	180588639	REMC_LuminalBreast.12780	0	.	180586609	180588639	0	1	2030	0
chr1	180590165	180591685	REMC_LuminalBreast.12781	0	.	180590165	180591685	0	1	1520	0
chr1	180596790	180601458	REMC_LuminalBreast.12782	0	.	180596790	180601458	0	1	4668	0
chr1	180832418	180832929	B_Cells_Pritchard.352897	0	.	180832418	180832929	0	1	511	0
chr1	180850376	180852470	B_cells_Cheung.23094	0	.	180850376	180852470	0	1	2094	0
chr1	180850403	180852339	REMC_BreastStem.6806	0	.	180850403	180852339	0	1	1936	0
chr1	180850476	180852893	B_Cells_Pritchard.352927	0	.	180850476	180852893	0	1	2417	0
chr1	180850632	180852536	H1_polyA+.14448	0	.	180850632	180852536	0	1	1904	0
chr1	180850778	180852158	prostate_carcinoma.11919	0	.	180850778	180852158	0	1	1380	0
chr1	180850897	180852387	NR_036490	0	+	180850897	180852387	0	1	1490	0
chr1	180850951	180852376	REMC_LuminalBreast.12792	0	.	180850951	180852376	0	1	1425	0
chr1	180851115	180851993	NEC_from_H9.9823	0	.	180851115	180851993	0	1	878	0
chr1	180852054	180852375	testes_Burge.7071	0	.	180852054	180852375	0	1	321	0
chr1	181127268	181132223	REMC_MyoepithelialBreast.12064	0	.	181127268	181132223	0	1	4955	0
chr1	181127548	181128864	REMC_LuminalBreast.12910	0	.	181127548	181128864	0	1	1316	0
chr1	181696619	181707504	HIT000092846	0	-	181696619	181707504	0	5	807,196,126,76,1027	0,904,8812,9603,9858
chr1	181696631	181707504	ENST00000421703	0	-	181696631	181707504	0	5	795,196,126,76,1027	0,892,8800,9591,9846
chr1	181707591	181707933	IMR90_UCSD_REMC.6561	0	-	181707591	181707933	0	1	342	0
chr1	181844597	181845888	REMC_MyoepithelialBreast.12192	0	.	181844597	181845888	0	1	1291	0
chr1	182320483	182321706	B_Cells_Pritchard.356661	0	.	182320483	182321706	0	1	1223	0
chr1	182341735	182344034	H1_polyA+.14559	0	.	182341735	182344034	0	1	2299	0
chr1	182342306	182343323	MIP101.8556	0	.	182342306	182343323	0	1	1017	0
chr1	182344914	182345404	B_Cells_Pritchard.356751	0	+	182344914	182345404	0	1	490	0
chr1	182345727	182347078	MIP101.8557	0	.	182345727	182347078	0	1	1351	0
chr1	182345749	182346615	H1_polyA+.14560	0	.	182345749	182346615	0	1	866	0
chr1	182345935	182346761	prostate_carcinoma.11996	0	.	182345935	182346761	0	1	826	0
chr1	182346093	182347604	B_cells_Cheung.23238	0	.	182346093	182347604	0	1	1511	0
chr1	182346185	182346739	ZR751_Thompson.3245	0	.	182346185	182346739	0	1	554	0
chr1	182346196	182347112	MDAMB468_Thompson.3503	0	.	182346196	182347112	0	1	916	0
chr1	182346201	182346565	BT474_Burge_Thompson.4090	0	.	182346201	182346565	0	1	364	0
chr1	182346207	182346568	MCF7_Burge_Thompson.4072	0	.	182346207	182346568	0	1	361	0
chr1	182346208	182346947	T47D_Burge_Thompson.3690	0	.	182346208	182346947	0	1	739	0
chr1	182346728	182347542	H1_polyA+.14561	0	.	182346728	182347542	0	1	814	0
chr1	182349306	182349672	B_Cells_Pritchard.356763	0	.	182349306	182349672	0	1	366	0
chr1	182866448	182867151	B_cells_Cheung.23293	0	.	182866448	182867151	0	1	703	0
chr1	182866572	182867068	H9_polyA+.6000	0	.	182866572	182867068	0	1	496	0
chr1	182869348	182874280	REMC_LuminalBreast.13061	0	.	182869348	182874280	0	1	4932	0
chr1	182876110	182879030	REMC_LuminalBreast.13005	0	.	182876110	182879030	0	1	2920	0
chr1	182876121	182878490	melanoma_Garraway_short_term_cultures.8904	0	.	182876121	182878490	0	1	2369	0
chr1	182876487	182877560	B_cells_Cheung.23300	0	.	182876487	182877560	0	1	1073	0
chr1	182877866	182884180	B_cells_Cheung.23301	0	-	182877866	182884180	0	3	256,165,82	0,2750,6232
chr1	182879118	182879461	melanoma_Garraway_short_term_cultures.8905	0	.	182879118	182879461	0	1	343	0
chr1	182879121	182880327	REMC_BreastStem.6873	0	.	182879121	182880327	0	1	1206	0
chr1	182879133	182881215	REMC_LuminalBreast.13006	0	.	182879133	182881215	0	1	2082	0
chr1	182881334	182883675	REMC_LuminalBreast.13007	0	.	182881334	182883675	0	1	2341	0
chr1	182881801	182883591	melanoma_Garraway_short_term_cultures.8907	0	.	182881801	182883591	0	1	1790	0
chr1	182882374	182883551	REMC_BreastStem.6875	0	.	182882374	182883551	0	1	1177	0
chr1	182882463	182883315	B_Cells_Pritchard.358015	0	.	182882463	182883315	0	1	852	0
chr1	182882931	182883440	prostate_carcinoma.12023	0	.	182882931	182883440	0	1	509	0
chr1	182884708	182885084	B_cells_Cheung.23303	0	.	182884708	182885084	0	1	376	0
chr1	182884749	182885411	melanoma_Garraway_short_term_cultures.8908	0	.	182884749	182885411	0	1	662	0
chr1	182893712	182898789	REMC_MyoepithelialBreast.12325	0	.	182893712	182898789	0	1	5077	0
chr1	182898879	182901221	brain_AmbionMAQC.5840	0	-	182898879	182901221	0	2	1312,190	0,2152
chr1	182898879	182900319	brain_AmbionMAQC.5841	0	.	182898879	182900319	0	1	1440	0
chr1	182898885	182910683	REMC_MyoepithelialBreast.12327	0	-	182898885	182910683	0	2	4400,5795	0,6003
chr1	182898885	182910683	REMC_MyoepithelialBreast.12326	0	.	182898885	182910683	0	1	11798	0
chr1	182898890	182906017	H1_polyA+.14580	0	.	182898890	182906017	0	1	7127	0
chr1	182899173	182900684	prostate_normal.7446	0	.	182899173	182900684	0	1	1511	0
chr1	182899175	182901911	prostate_carcinoma.12024	0	.	182899175	182901911	0	1	2736	0
chr1	182899179	182905160	H9_polyA+.6001	0	-	182899179	182905160	0	2	1724,272	0,5709
chr1	182899690	182904259	REMC_LuminalBreast.13013	0	.	182899690	182904259	0	1	4569	0
chr1	182899696	182900165	A549_Myers.8315	0	.	182899696	182900165	0	1	469	0
chr1	182993888	182996756	HIT000017537	0	+	182993888	182996756	0	1	2868	0
chr1	182995090	182996219	H1_polyA+.14584	0	.	182995090	182996219	0	1	1129	0
chr1	183003389	183010811	REMC_BreastStem.6991	0	.	183003389	183010811	0	1	7422	0
chr1	183007490	183008263	CD4_Plagnol_resting.8797	0	.	183007490	183008263	0	1	773	0
chr1	183014372	183015814	REMC_BreastStem.6993	0	.	183014372	183015814	0	1	1442	0
chr1	183022208	183024445	REMC_BreastStem.6996	0	.	183022208	183024445	0	1	2237	0
chr1	183023186	183024514	H1_polyA+.14591	0	.	183023186	183024514	0	1	1328	0
chr1	183023471	183023843	B_cells_Cheung.23363	0	.	183023471	183023843	0	1	372	0
chr1	183023915	183024496	B_cells_Cheung.23364	0	.	183023915	183024496	0	1	581	0
chr1	183339577	183340287	B_Cells_Pritchard.359159	0	.	183339577	183340287	0	1	710	0
chr1	183593851	183595602	B_cells_Cheung.23658	0	.	183593851	183595602	0	1	1751	0
chr1	183593898	183595342	B_Cells_Pritchard.360035	0	.	183593898	183595342	0	1	1444	0
chr1	183593898	183594907	HepG2_Caltech_ENCODE.4777	0	.	183593898	183594907	0	1	1009	0
chr1	183593933	183594885	H1_polyA+.15061	0	.	183593933	183594885	0	1	952	0
chr1	183594168	183595135	melanoma_Garraway_short_term_cultures.8954	0	.	183594168	183595135	0	1	967	0
chr1	183598417	183600778	H1_polyA+.15064	0	.	183598417	183600778	0	1	2361	0
chr1	183599435	183600120	B_cells_Cheung.23664	0	.	183599435	183600120	0	1	685	0
chr1	183601252	183603422	B_Cells_Pritchard.360059	0	+	183601252	183603422	0	2	574,723	0,1447
chr1	183604056	183606335	H1_polyA+.14696	0	.	183604056	183606335	0	1	2279	0
chr1	183604087	183606285	B_Cells_Pritchard.360073	0	-	183604087	183606285	0	1	2198	0
chr1	183604110	183605490	HepG2_Caltech_ENCODE.4779	0	.	183604110	183605490	0	1	1380	0
chr1	183604130	183604795	prostate_carcinoma.12092	0	.	183604130	183604795	0	1	665	0
chr1	183610007	183613003	H1_polyA+.14698	0	.	183610007	183613003	0	1	2996	0
chr1	183610039	183613133	B_cells_Cheung.23669	0	.	183610039	183613133	0	1	3094	0
chr1	183610147	183613081	B_Cells_Pritchard.360089	0	-	183610147	183613081	0	2	632,2268	0,666
chr1	183610539	183612140	MIP101.8600	0	.	183610539	183612140	0	1	1601	0
chr1	183610722	183611821	K562.6234	0	.	183610722	183611821	0	1	1099	0
chr1	183610836	183612032	MCF10A_Thompson.3045	0	.	183610836	183612032	0	1	1196	0
chr1	183610838	183612042	prostate_carcinoma.12094	0	.	183610838	183612042	0	1	1204	0
chr1	183610846	183612014	HepG2_Caltech_ENCODE.4782	0	.	183610846	183612014	0	1	1168	0
chr1	183610871	183611834	REMC_LuminalBreast.13153	0	.	183610871	183611834	0	1	963	0
chr1	183611332	183612022	REMC_MyoepithelialBreast.12427	0	.	183611332	183612022	0	1	690	0
chr1	183611352	183611902	prostate_normal.7481	0	.	183611352	183611902	0	1	550	0
chr1	185327486	185328354	B_cells_Cheung.23844	0	.	185327486	185328354	0	1	868	0
chr1	185366392	185367416	B_cells_Cheung.23893	0	.	185366392	185367416	0	1	1024	0
chr1	185451304	185452658	prostate_carcinoma.12139	0	.	185451304	185452658	0	1	1354	0
chr1	185527094	185527729	B_cells_Cheung.23923	0	.	185527094	185527729	0	1	635	0
chr1	185565320	185566250	prostate_carcinoma.12142	0	.	185565320	185566250	0	1	930	0
chr1	185643427	185644837	B_cells_Cheung.23941	0	.	185643427	185644837	0	1	1410	0
chr1	185645065	185646157	K562.6262	0	.	185645065	185646157	0	1	1092	0
chr1	185683912	185684435	B_cells_Cheung.23945	0	.	185683912	185684435	0	1	523	0
chr1	185700815	185702214	B_Cells_Pritchard.364723	0	.	185700815	185702214	0	1	1399	0
chr1	185701129	185701620	B_cells_Cheung.23954	0	.	185701129	185701620	0	1	491	0
chr1	185702668	185703587	B_cells_Cheung.23956	0	.	185702668	185703587	0	1	919	0
chr1	185786859	185788506	H1_polyA+.14727	0	.	185786859	185788506	0	1	1647	0
chr1	185791583	185796589	H1_polyA+.14730	0	.	185791583	185796589	0	1	5006	0
chr1	185876853	185904359	H1_polyA+.14738	0	+	185876853	185904359	0	3	383,1531,828	0,519,26678
chr1	185876980	185879624	HIT000096398	0	+	185876980	185879624	0	3	44,106,2252	0,150,392
chr1	185876980	185879615	ENST00000429725	0	+	185876980	185879615	0	3	44,106,2243	0,150,392
chr1	185877113	185877762	HIT000501476	0	+	185877113	185877762	0	2	123,390	0,259
chr1	185924294	185925423	H1_polyA+.14743	0	.	185924294	185925423	0	1	1129	0
chr1	186379325	186379933	B_Cells_Pritchard.366021	0	.	186379325	186379933	0	1	608	0
chr1	187141441	187273016	ENST00000445072	0	+	187141441	187273016	0	2	239,545	0,131030
chr1	187385384	187385761	A549_Myers.8381	0	.	187385384	187385761	0	1	377	0
chr1	187571725	187572484	K562.6287	0	.	187571725	187572484	0	1	759	0
chr1	187571901	187572979	melanoma_Garraway_short_term_cultures.9028	0	.	187571901	187572979	0	1	1078	0
chr1	189761143	189761542	BT474_Burge_Thompson.4156	0	.	189761143	189761542	0	1	399	0
chr1	190444674	190446292	REMC_LuminalBreast.13181	0	.	190444674	190446292	0	1	1618	0
chr1	190727488	190802962	HepG2_Caltech_ENCODE.4804	0	-	190727488	190802962	0	3	234,682,63	0,25546,75411
chr1	190727584	190728536	B_Cells_Pritchard.372923	0	.	190727584	190728536	0	1	952	0
chr1	190744685	190745662	B_Cells_Pritchard.372959	0	.	190744685	190745662	0	1	977	0
chr1	190748232	190748791	B_Cells_Pritchard.372977	0	.	190748232	190748791	0	1	559	0
chr1	190753069	190753785	B_Cells_Pritchard.372997	0	.	190753069	190753785	0	1	716	0
chr1	190753140	190753788	B_cells_Cheung.24004	0	.	190753140	190753788	0	1	648	0
chr1	190753140	190802962	B_cells_Cheung.24003	0	-	190753140	190802962	0	2	576,63	0,49759
chr1	190753390	190802970	Rinn_00000706	0	-	190753390	190802970	0	2	326,72	0,49508
chr1	190753391	190802970	ENST00000434300	0	-	190753391	190802970	0	2	325,71	0,49508
chr1	190753403	190753706	CD4_Snyder.9788	0	.	190753403	190753706	0	1	303	0
chr1	190776996	190777462	B_cells_Cheung.24011	0	.	190776996	190777462	0	1	466	0
chr1	190845554	190856509	pHIT000098754	0	+	190845554	190856509	0	2	135,168	0,10787
chr1	190870296	190871102	B_Cells_Pritchard.373403	0	-	190870296	190871102	0	1	806	0
chr1	191050642	191052203	REMC_LuminalBreast.13221	0	.	191050642	191052203	0	1	1561	0
chr1	191059077	191060337	REMC_BreastStem.7011	0	.	191059077	191060337	0	1	1260	0
chr1	191059198	191060781	REMC_MyoepithelialBreast.12528	0	.	191059198	191060781	0	1	1583	0
chr1	191067445	191069275	REMC_MyoepithelialBreast.12532	0	.	191067445	191069275	0	1	1830	0
chr1	191068083	191069088	REMC_BreastStem.7012	0	.	191068083	191069088	0	1	1005	0
chr1	191070774	191071544	REMC_MyoepithelialBreast.12533	0	.	191070774	191071544	0	1	770	0
chr1	191175317	191178421	REMC_LuminalBreast.13225	0	.	191175317	191178421	0	1	3104	0
chr1	191176075	191179615	B_cells_Cheung.24070	0	.	191176075	191179615	0	1	3540	0
chr1	191176878	191178532	prostate_carcinoma.12196	0	.	191176878	191178532	0	1	1654	0
chr1	191176900	191179473	melanoma_Garraway_short_term_cultures.9050	0	.	191176900	191179473	0	1	2573	0
chr1	191176980	191179619	B_Cells_Pritchard.374281	0	.	191176980	191179619	0	1	2639	0
chr1	191178639	191179958	prostate_carcinoma.12197	0	.	191178639	191179958	0	1	1319	0
chr1	191206122	191207066	REMC_MyoepithelialBreast.12546	0	.	191206122	191207066	0	1	944	0
chr1	191206218	191206796	melanoma_Garraway_short_term_cultures.9061	0	.	191206218	191206796	0	1	578	0
chr1	191206232	191206847	B_Cells_Pritchard.374425	0	.	191206232	191206847	0	1	615	0
chr1	191206935	191207404	B_cells_Cheung.24090	0	.	191206935	191207404	0	1	469	0
chr1	191206954	191208050	REMC_LuminalBreast.13244	0	.	191206954	191208050	0	1	1096	0
chr1	191207056	191207702	melanoma_Garraway_short_term_cultures.9062	0	.	191207056	191207702	0	1	646	0
chr1	191207116	191208031	REMC_MyoepithelialBreast.12547	0	.	191207116	191208031	0	1	915	0
chr1	191207472	191207825	B_cells_Cheung.24091	0	.	191207472	191207825	0	1	353	0
chr1	191215239	191216056	REMC_LuminalBreast.13246	0	.	191215239	191216056	0	1	817	0
chr1	191223731	191224471	K562.6319	0	.	191223731	191224471	0	1	740	0
chr1	191223877	191224592	MIP101.8645	0	.	191223877	191224592	0	1	715	0
chr1	191227830	191229041	B_cells_Cheung.24109	0	.	191227830	191229041	0	1	1211	0
chr1	191231675	191232066	B_cells_Cheung.24112	0	.	191231675	191232066	0	1	391	0
chr1	191233022	191234767	B_cells_Cheung.24114	0	.	191233022	191234767	0	1	1745	0
chr1	191233428	191233961	A549_Myers.8399	0	.	191233428	191233961	0	1	533	0
chr1	191233563	191234725	REMC_LuminalBreast.13254	0	.	191233563	191234725	0	1	1162	0
chr1	191235743	191236069	B_cells_Cheung.24116	0	.	191235743	191236069	0	1	326	0
chr1	191238881	191240054	REMC_MyoepithelialBreast.12554	0	.	191238881	191240054	0	1	1173	0
chr1	191343068	191344042	REMC_LuminalBreast.13257	0	.	191343068	191344042	0	1	974	0
chr1	191352690	191353725	H1_polyA+.14815	0	.	191352690	191353725	0	1	1035	0
chr1	191352994	191353457	K562.6328	0	.	191352994	191353457	0	1	463	0
chr1	191353828	191354954	H1_polyA+.14816	0	.	191353828	191354954	0	1	1126	0
chr1	191505501	191507282	REMC_BreastStem.7039	0	.	191505501	191507282	0	1	1781	0
chr1	191507919	191508596	REMC_MyoepithelialBreast.12573	0	.	191507919	191508596	0	1	677	0
chr1	191508740	191523904	REMC_LuminalBreast.13280	0	.	191508740	191523904	0	1	15164	0
chr1	191511905	191517473	REMC_BreastStem.7041	0	.	191511905	191517473	0	1	5568	0
chr1	191521012	191521458	prostate_normal.7565	0	.	191521012	191521458	0	1	446	0
chr1	191534462	191535260	REMC_MyoepithelialBreast.12579	0	.	191534462	191535260	0	1	798	0
chr1	191540496	191601706	Rinn_00000361	0	+	191540496	191601706	0	4	195,144,137,307	0,44388,46359,60903
chr1	191547074	191548323	REMC_LuminalBreast.13290	0	.	191547074	191548323	0	1	1249	0
chr1	191548278	191551543	REMC_MyoepithelialBreast.12587	0	.	191548278	191551543	0	1	3265	0
chr1	191548469	191550303	REMC_LuminalBreast.13292	0	.	191548469	191550303	0	1	1834	0
chr1	191594027	191594665	prostate_carcinoma.12254	0	.	191594027	191594665	0	1	638	0
chr1	191601254	191602345	prostate_carcinoma.12258	0	.	191601254	191602345	0	1	1091	0
chr1	191601747	191602476	REMC_MyoepithelialBreast.12595	0	.	191601747	191602476	0	1	729	0
chr1	191603334	191605407	prostate_carcinoma.12260	0	.	191603334	191605407	0	1	2073	0
chr1	191612115	191613334	REMC_MyoepithelialBreast.12597	0	.	191612115	191613334	0	1	1219	0
chr1	191615445	191616485	REMC_LuminalBreast.13310	0	.	191615445	191616485	0	1	1040	0
chr1	191617418	191618760	REMC_LuminalBreast.13311	0	.	191617418	191618760	0	1	1342	0
chr1	191617750	191618767	REMC_MyoepithelialBreast.12600	0	.	191617750	191618767	0	1	1017	0
chr1	191632825	191635908	REMC_MyoepithelialBreast.12602	0	.	191632825	191635908	0	1	3083	0
chr1	191635365	191636200	prostate_carcinoma.12272	0	.	191635365	191636200	0	1	835	0
chr1	191711563	191712201	prostate_carcinoma.12284	0	.	191711563	191712201	0	1	638	0
chr1	191736788	191737343	liver_polyA+.17446	0	.	191736788	191737343	0	1	555	0
chr1	191769703	191770199	prostate_carcinoma.12295	0	.	191769703	191770199	0	1	496	0
chr1	191769723	191770038	liver_polyA+.17460	0	.	191769723	191770038	0	1	315	0
chr1	191915992	191916801	CD4_Snyder.9935	0	.	191915992	191916801	0	1	809	0
chr1	191919854	191920488	CD4_Snyder.9936	0	.	191919854	191920488	0	1	634	0
chr1	191919997	191924182	Rinn_00000708	0	-	191919997	191924182	0	3	467,211,175	0,1334,4010
chr1	191919998	191924182	ENST00000447056	0	-	191919998	191924182	0	3	466,210,174	0,1334,4010
chr1	191988821	191989424	liver_polyA+.17503	0	.	191988821	191989424	0	1	603	0
chr1	192143211	192144070	prostate_carcinoma.12332	0	.	192143211	192144070	0	1	859	0
chr1	192944808	192947513	K562.6395	0	.	192944808	192947513	0	1	2705	0
chr1	192997082	193000270	K562.6402	0	.	192997082	193000270	0	1	3188	0
chr1	193079630	193080402	K562.6413	0	.	193079630	193080402	0	1	772	0
chr1	193095586	193097709	K562.6386	0	.	193095586	193097709	0	1	2123	0
chr1	193994026	193999153	HIT000096456	0	-	193994026	193999153	0	3	1185,142,152	0,2993,4975
chr1	193994103	193999153	Rinn_00000709	0	-	193994103	193999153	0	3	1108,143,153	0,2915,4897
chr1	193994104	193999153	ENST00000513624	0	-	193994104	193999153	0	3	1107,142,152	0,2915,4897
chr1	193998883	193999364	A549_Myers.8439	0	.	193998883	193999364	0	1	481	0
chr1	194026390	194026761	A549_Myers.8440	0	.	194026390	194026761	0	1	371	0
chr1	194083151	194083945	H1_polyA+.14820	0	.	194083151	194083945	0	1	794	0
chr1	195250308	195252005	liver_polyA+.17733	0	.	195250308	195252005	0	1	1697	0
chr1	195304263	195304710	BT474_Burge_Thompson.4179	0	.	195304263	195304710	0	1	447	0
chr1	195437468	195438278	CD4_Plagnol_activated.9184	0	.	195437468	195438278	0	1	810	0
chr1	195445150	195446412	B_cells_Cheung.24225	0	.	195445150	195446412	0	1	1262	0
chr1	196224841	196225753	K562.6484	0	-	196224841	196225753	0	2	743,26	0,886
chr1	196224841	196225790	K562.6485	0	.	196224841	196225790	0	1	949	0
chr1	196819931	196820299	B_cells_Cheung.24340	0	.	196819931	196820299	0	1	368	0
chr1	196830671	196831889	B_Cells_Pritchard.384719	0	.	196830671	196831889	0	1	1218	0
chr1	196830794	196831616	B_cells_Cheung.24346	0	.	196830794	196831616	0	1	822	0
chr1	196995483	196995852	B_cells_Cheung.24355	0	.	196995483	196995852	0	1	369	0
chr1	197008541	197009163	B_Cells_Pritchard.385027	0	.	197008541	197009163	0	1	622	0
chr1	197008801	197009231	B_cells_Cheung.24364	0	.	197008801	197009231	0	1	430	0
chr1	197105791	197107367	B_cells_Cheung.24413	0	.	197105791	197107367	0	1	1576	0
chr1	197105855	197107538	B_Cells_Pritchard.385303	0	.	197105855	197107538	0	1	1683	0
chr1	197109374	197111554	REMC_MyoepithelialBreast.12644	0	.	197109374	197111554	0	1	2180	0
chr1	197109416	197110286	B_Cells_Pritchard.385309	0	.	197109416	197110286	0	1	870	0
chr1	197109422	197111992	REMC_LuminalBreast.13341	0	.	197109422	197111992	0	1	2570	0
chr1	197109443	197110344	melanoma_Garraway_short_term_cultures.9159	0	.	197109443	197110344	0	1	901	0
chr1	197113436	197117388	B_Cells_Pritchard.385315	0	.	197113436	197117388	0	1	3952	0
chr1	197153957	197156998	B_cells_Cheung.24442	0	.	197153957	197156998	0	1	3041	0
chr1	197155164	197156506	B_Cells_Pritchard.385463	0	.	197155164	197156506	0	1	1342	0
chr1	197155584	197156596	REMC_LuminalBreast.13352	0	.	197155584	197156596	0	1	1012	0
chr1	197155636	197156260	melanoma_Garraway_short_term_cultures.9165	0	.	197155636	197156260	0	1	624	0
chr1	197169247	197169573	B_Cells_Pritchard.385505	0	.	197169247	197169573	0	1	326	0
chr1	197170456	197173178	CD4_Snyder.10217	0	.	197170456	197173178	0	1	2722	0
chr1	197170494	197171636	B_cells_Cheung.24451	0	.	197170494	197171636	0	1	1142	0
chr1	197170595	197173189	B_Cells_Pritchard.385511	0	-	197170595	197173189	0	2	986,655	0,1939
chr1	197219071	197220953	Rinn_00000364	0	+	197219071	197220953	0	3	163,141,534	0,569,1348
chr1	197219072	197220953	ENST00000422480	0	+	197219072	197220953	0	3	162,140,533	0,569,1348
chr1	197454028	197454346	A549_Myers.8515	0	.	197454028	197454346	0	1	318	0
chr1	198477506	198480591	H1_polyA+.14979	0	.	198477506	198480591	0	1	3085	0
chr1	198489197	198490612	H1_polyA+.14981	0	.	198489197	198490612	0	1	1415	0
chr1	198489291	198489937	B_Cells_Pritchard.388557	0	.	198489291	198489937	0	1	646	0
chr1	198492291	198493561	H1_polyA+.14982	0	.	198492291	198493561	0	1	1270	0
chr1	198505142	198506785	H1_polyA+.14987	0	.	198505142	198506785	0	1	1643	0
chr1	198525977	198526871	H1_polyA+.14993	0	.	198525977	198526871	0	1	894	0
chr1	198535661	198536089	B_Cells_Pritchard.388723	0	.	198535661	198536089	0	1	428	0
chr1	198535762	198537186	H1_polyA+.14995	0	.	198535762	198537186	0	1	1424	0
chr1	198537946	198538404	A549_Myers.8534	0	.	198537946	198538404	0	1	458	0
chr1	198546267	198547384	H1_polyA+.15004	0	.	198546267	198547384	0	1	1117	0
chr1	198556985	198564686	B_Cells_Pritchard.388757	0	+	198556985	198564686	0	2	539,1654	0,6047
chr1	198558298	198560420	H1_polyA+.15010	0	.	198558298	198560420	0	1	2122	0
chr1	198561828	198564676	HepG2_Caltech_ENCODE.4871	0	.	198561828	198564676	0	1	2848	0
chr1	198562082	198562679	H9_polyA+.6171	0	.	198562082	198562679	0	1	597	0
chr1	198562134	198562844	HIT000067046	0	-	198562134	198562844	0	2	355,203	0,507
chr1	198563070	198563809	liver_polyA+.17945	0	.	198563070	198563809	0	1	739	0
chr1	198563077	198563814	H9_polyA+.6170	0	.	198563077	198563814	0	1	737	0
chr1	198563123	198563587	brain_AmbionMAQC.5977	0	.	198563123	198563587	0	1	464	0
chr1	198576116	198577586	REMC_LuminalBreast.13414	0	.	198576116	198577586	0	1	1470	0
chr1	198613772	198615578	B_cells_Cheung.24495	0	.	198613772	198615578	0	1	1806	0
chr1	198614739	198615446	B_Cells_Pritchard.390759	0	+	198614739	198615446	0	2	251,456	0,251
chr1	198614811	198615795	HepG2_Caltech_ENCODE.4877	0	.	198614811	198615795	0	1	984	0
chr1	198614878	198615624	melanoma_Garraway_short_term_cultures.9179	0	.	198614878	198615624	0	1	746	0
chr1	198614888	198615503	liver_polyA+.18067	0	.	198614888	198615503	0	1	615	0
chr1	198614892	198615230	kidney_Gilad.12108	0	.	198614892	198615230	0	1	338	0
chr1	198614904	198622304	REMC_LuminalBreast.13429	0	.	198614904	198622304	0	1	7400	0
chr1	198623168	198626414	REMC_MyoepithelialBreast.12675	0	.	198623168	198626414	0	1	3246	0
chr1	198626574	198629001	REMC_LuminalBreast.13431	0	.	198626574	198629001	0	1	2427	0
chr1	198628432	198629028	B_cells_Cheung.24506	0	.	198628432	198629028	0	1	596	0
chr1	198635246	198635722	B_Cells_Pritchard.390829	0	+	198635246	198635722	0	1	476	0
chr1	198652638	198657672	H1_polyA+.15075	0	.	198652638	198657672	0	1	5034	0
chr1	198652638	198674531	H1_polyA+.15077	0	+	198652638	198674531	0	2	4521,10875	0,11018
chr1	198655996	198670362	liver_polyA+.18089	0	+	198655996	198670362	0	2	22,435	0,13931
chr1	198657845	198674531	H1_polyA+.15076	0	.	198657845	198674531	0	1	16686	0
chr1	198661451	198661815	B_cells_Cheung.24521	0	.	198661451	198661815	0	1	364	0
chr1	198669009	198670379	B_cells_Cheung.24524	0	.	198669009	198670379	0	1	1370	0
chr1	198669545	198670364	H9_polyA+.6197	0	.	198669545	198670364	0	1	819	0
chr1	198676310	198684638	H1_polyA+.15079	0	.	198676310	198684638	0	1	8328	0
chr1	198697968	198706299	H1_polyA+.15081	0	.	198697968	198706299	0	1	8331	0
chr1	198699168	198699735	A549_Myers.8553	0	.	198699168	198699735	0	1	567	0
chr1	198709023	198723743	H1_polyA+.15087	0	-	198709023	198723743	0	3	1721,2734,120	0,5681,14600
chr1	198714704	198718210	H1_polyA+.15089	0	.	198714704	198718210	0	1	3506	0
chr1	198714726	198720595	H9_polyA+.6212	0	-	198714726	198720595	0	2	1644,13	0,5856
chr1	198714726	198718594	H9_polyA+.6211	0	+	198714726	198718594	0	2	3117,27	0,3841
chr1	198714732	198715995	B_cells_Cheung.24538	0	.	198714732	198715995	0	1	1263	0
chr1	198714766	198716014	liver_polyA+.17987	0	.	198714766	198716014	0	1	1248	0
chr1	198715144	198715639	H1_rRNA-depleted_UCSD_REMC.12089	0	.	198715144	198715639	0	1	495	0
chr1	198715623	198716055	NEC_from_H9.10273	0	.	198715623	198716055	0	1	432	0
chr1	198917071	198917865	B_cells_Cheung.24588	0	.	198917071	198917865	0	1	794	0
chr1	199114904	199124581	B_Cells_Pritchard.390723	0	-	199114904	199124581	0	3	2465,76,2179	0,7309,7498
chr1	199203573	199204134	A549_Myers.8627	0	.	199203573	199204134	0	1	561	0
chr1	199261064	199272411	testes_Burge.7348	0	+	199261064	199272411	0	5	31,189,788,72,373	0,117,5264,9738,10974
chr1	199261117	199268322	H1_polyA+.15105	0	.	199261117	199268322	0	1	7205	0
chr1	199261225	199262651	K562.6538	0	.	199261225	199262651	0	1	1426	0
chr1	199266365	199267203	B_Cells_Pritchard.391045	0	.	199266365	199267203	0	1	838	0
chr1	199269409	199270571	H1_polyA+.15106	0	.	199269409	199270571	0	1	1162	0
chr1	199272061	199272444	A549_Myers.8624	0	.	199272061	199272444	0	1	383	0
chr1	199349739	199350501	B_Cells_Pritchard.391261	0	.	199349739	199350501	0	1	762	0
chr1	199349790	199350220	A549_Myers.8640	0	.	199349790	199350220	0	1	430	0
chr1	199353160	199353698	melanoma_Garraway_short_term_cultures.9215	0	.	199353160	199353698	0	1	538	0
chr1	199353167	199353697	prostate_carcinoma.12463	0	.	199353167	199353697	0	1	530	0
chr1	199353294	199353675	A549_Myers.8645	0	.	199353294	199353675	0	1	381	0
chr1	199364751	199365053	A549_Myers.8648	0	.	199364751	199365053	0	1	302	0
chr1	199571907	199573216	REMC_LuminalBreast.13465	0	.	199571907	199573216	0	1	1309	0
chr1	199580548	199581862	REMC_MyoepithelialBreast.12747	0	.	199580548	199581862	0	1	1314	0
chr1	199580846	199582236	REMC_LuminalBreast.13468	0	.	199580846	199582236	0	1	1390	0
chr1	199582923	199589209	REMC_LuminalBreast.13469	0	.	199582923	199589209	0	1	6286	0
chr1	199587179	199587943	REMC_MyoepithelialBreast.12749	0	.	199587179	199587943	0	1	764	0
chr1	199589359	199589921	REMC_MyoepithelialBreast.12750	0	.	199589359	199589921	0	1	562	0
chr1	199668572	199671062	REMC_LuminalBreast.13483	0	.	199668572	199671062	0	1	2490	0
chr1	199671298	199673905	REMC_LuminalBreast.13484	0	.	199671298	199673905	0	1	2607	0
chr1	199671313	199673918	REMC_MyoepithelialBreast.12737	0	.	199671313	199673918	0	1	2605	0
chr1	199671531	199673852	REMC_BreastStem.7125	0	.	199671531	199673852	0	1	2321	0
chr1	199676065	199678735	REMC_LuminalBreast.13486	0	.	199676065	199678735	0	1	2670	0
chr1	199676141	199678512	REMC_BreastStem.7127	0	.	199676141	199678512	0	1	2371	0
chr1	199676153	199678477	REMC_MyoepithelialBreast.12739	0	.	199676153	199678477	0	1	2324	0
chr1	199678618	199689808	REMC_MyoepithelialBreast.12740	0	.	199678618	199689808	0	1	11190	0
chr1	199678874	199685457	REMC_LuminalBreast.13487	0	.	199678874	199685457	0	1	6583	0
chr1	199683490	199688160	REMC_BreastStem.7130	0	.	199683490	199688160	0	1	4670	0
chr1	199686671	199687267	B_cells_Cheung.24718	0	.	199686671	199687267	0	1	596	0
chr1	199687728	199688159	B_cells_Cheung.24719	0	.	199687728	199688159	0	1	431	0
chr1	199694875	199695466	B_cells_Cheung.24723	0	.	199694875	199695466	0	1	591	0
chr1	199696898	199697730	MDAMB468_Thompson.3594	0	.	199696898	199697730	0	1	832	0
chr1	199696907	199698176	melanoma_Garraway_short_term_cultures.9223	0	.	199696907	199698176	0	1	1269	0
chr1	199696914	199698276	B_cells_Cheung.24725	0	.	199696914	199698276	0	1	1362	0
chr1	199696922	199698038	ZR751_Thompson.3355	0	.	199696922	199698038	0	1	1116	0
chr1	199696934	199698372	MCF10A_Thompson.3372	0	.	199696934	199698372	0	1	1438	0
chr1	199696944	199698037	prostate_normal.10622	0	.	199696944	199698037	0	1	1093	0
chr1	199696961	199698042	MCF7_Burge_Thompson.4202	0	.	199696961	199698042	0	1	1081	0
chr1	199696997	199698173	HeLa_polyA+_Chen.4913	0	.	199696997	199698173	0	1	1176	0
chr1	199697031	199697631	HepG2_Caltech_ENCODE.4912	0	.	199697031	199697631	0	1	600	0
chr1	199698462	199699618	B_cells_Cheung.24726	0	.	199698462	199699618	0	1	1156	0
chr1	199698469	199699549	MCF7_Burge_Thompson.4203	0	.	199698469	199699549	0	1	1080	0
chr1	199698515	199699587	MCF10A_Thompson.3373	0	.	199698515	199699587	0	1	1072	0
chr1	199698574	199699596	MDAMB468_Thompson.3596	0	.	199698574	199699596	0	1	1022	0
chr1	199699094	199699575	brain_AmbionMAQC.6005	0	.	199699094	199699575	0	1	481	0
chr1	199706952	199709618	REMC_BreastStem.7285	0	.	199706952	199709618	0	1	2666	0
chr1	199707026	199707756	prostate_carcinoma.14876	0	.	199707026	199707756	0	1	730	0
chr1	199708946	199709511	prostate_carcinoma.14877	0	.	199708946	199709511	0	1	565	0
chr1	199712677	199717179	REMC_BreastStem.7288	0	.	199712677	199717179	0	1	4502	0
chr1	199717582	199718181	A549_Myers.8783	0	.	199717582	199718181	0	1	599	0
chr1	199747802	199748204	A549_Myers.8797	0	.	199747802	199748204	0	1	402	0
chr1	199750223	199751059	liver_polyA+.18155	0	.	199750223	199751059	0	1	836	0
chr1	199750330	199751079	MeWo_Garraway.4915	0	.	199750330	199751079	0	1	749	0
chr1	199750624	199751037	CD4_Snyder.10250	0	.	199750624	199751037	0	1	413	0
chr1	199751335	199754188	melanoma_Garraway_short_term_cultures.9233	0	.	199751335	199754188	0	1	2853	0
chr1	199751709	199753186	ZR751_Thompson.3370	0	.	199751709	199753186	0	1	1477	0
chr1	199753424	199755565	MCF10A_Thompson.3145	0	.	199753424	199755565	0	1	2141	0
chr1	199755204	199755567	brain_AmbionMAQC.6101	0	.	199755204	199755567	0	1	363	0
chr1	199760208	199761158	REMC_LuminalBreast.13876	0	.	199760208	199761158	0	1	950	0
chr1	199765472	199767675	REMC_MyoepithelialBreast.12756	0	.	199765472	199767675	0	1	2203	0
chr1	199766073	199770446	REMC_LuminalBreast.13879	0	.	199766073	199770446	0	1	4373	0
chr1	199766078	199771086	melanoma_Garraway_short_term_cultures.9242	0	.	199766078	199771086	0	1	5008	0
chr1	199766659	199770482	BT474_Burge_Thompson.4249	0	.	199766659	199770482	0	1	3823	0
chr1	199766730	199768834	MeWo_Garraway.4892	0	.	199766730	199768834	0	1	2104	0
chr1	199766733	199770494	MCF7_Burge_Thompson.4312	0	.	199766733	199770494	0	1	3761	0
chr1	199766994	199767889	MDAMB231_Thompson.3278	0	.	199766994	199767889	0	1	895	0
chr1	199767083	199767874	brain_AmbionMAQC.6104	0	.	199767083	199767874	0	1	791	0
chr1	199767113	199767439	MB435_Burge.5752	0	.	199767113	199767439	0	1	326	0
chr1	199769830	199770483	kidney_Gilad.12212	0	.	199769830	199770483	0	1	653	0
chr1	199771332	199772658	B_cells_Cheung.24741	0	.	199771332	199772658	0	1	1326	0
chr1	199772164	199772653	B_Cells_Pritchard.393911	0	+	199772164	199772653	0	1	489	0
chr1	199774557	199775195	melanoma_Garraway_short_term_cultures.9244	0	.	199774557	199775195	0	1	638	0
chr1	199774670	199775100	MDAMB231_Thompson.3202	0	.	199774670	199775100	0	1	430	0
chr1	199774675	199775097	prostate_carcinoma.14884	0	.	199774675	199775097	0	1	422	0
chr1	199774680	199775116	MDAMB468_Thompson.3652	0	.	199774680	199775116	0	1	436	0
chr1	199774685	199775880	REMC_LuminalBreast.13611	0	.	199774685	199775880	0	1	1195	0
chr1	199774695	199775097	adipose_Burge.5334	0	.	199774695	199775097	0	1	402	0
chr1	199774785	199775088	brain_AmbionMAQC.6011	0	.	199774785	199775088	0	1	303	0
chr1	199774889	199824403	Rinn_00002216	0	+	199774889	199824403	0	2	204,115	0,49399
chr1	199774891	199775215	H1_polyA+.15129	0	.	199774891	199775215	0	1	324	0
chr1	199775939	199777419	REMC_LuminalBreast.13612	0	.	199775939	199777419	0	1	1480	0
chr1	199776942	199808745	khalil_154	0	.	199776942	199808745	0	6	33,41,215,345,123,125	0,3961,18637,24888,27874,31678
chr1	199783648	199784804	REMC_LuminalBreast.13617	0	.	199783648	199784804	0	1	1156	0
chr1	199787846	199788633	B_Cells_Pritchard.392473	0	.	199787846	199788633	0	1	787	0
chr1	199788143	199790797	REMC_LuminalBreast.13619	0	.	199788143	199790797	0	1	2654	0
chr1	199788763	199789536	melanoma_Garraway_short_term_cultures.9251	0	.	199788763	199789536	0	1	773	0
chr1	199789965	199790728	B_Cells_Pritchard.392485	0	.	199789965	199790728	0	1	763	0
chr1	199791059	199792765	B_cells_Cheung.24800	0	.	199791059	199792765	0	1	1706	0
chr1	199791233	199791992	B_Cells_Pritchard.392489	0	.	199791233	199791992	0	1	759	0
chr1	199793579	199793997	B_Cells_Pritchard.392499	0	.	199793579	199793997	0	1	418	0
chr1	199800356	199801994	REMC_LuminalBreast.13623	0	.	199800356	199801994	0	1	1638	0
chr1	199801021	199801612	B_Cells_Pritchard.392527	0	.	199801021	199801612	0	1	591	0
chr1	199801557	199802822	melanoma_Garraway_short_term_cultures.9252	0	.	199801557	199802822	0	1	1265	0
chr1	199818971	199820053	REMC_LuminalBreast.13625	0	.	199818971	199820053	0	1	1082	0
chr1	199827795	199853968	khalil_155	0	.	199827795	199853968	0	7	429,1039,145,176,29,255,159	0,10192,18964,19727,21226,22216,26014
chr1	199837916	199838314	B_cells_Cheung.24808	0	.	199837916	199838314	0	1	398	0
chr1	199838806	199839819	H1_polyA+.15500	0	.	199838806	199839819	0	1	1013	0
chr1	199847086	199848913	H1_polyA+.15501	0	.	199847086	199848913	0	1	1827	0
chr1	199857623	199858175	B_Cells_Pritchard.392703	0	.	199857623	199858175	0	1	552	0
chr1	199857841	199858258	ZR751_Thompson.3365	0	.	199857841	199858258	0	1	417	0
chr1	201046028	201048239	B_cells_Cheung.25012	0	.	201046028	201048239	0	1	2211	0
chr1	201046028	201048239	B_cells_Cheung.25011	0	+	201046028	201048239	0	2	1093,914	0,1297
chr1	201046045	201047606	H1_polyA+.15235	0	+	201046045	201047606	0	2	1076,281	0,1280
chr1	201046045	201048014	H1_polyA+.15236	0	.	201046045	201048014	0	1	1969	0
chr1	201046229	201047662	A549_Myers.8861	0	.	201046229	201047662	0	1	1433	0
chr1	201046598	201047663	testes_Burge.7475	0	.	201046598	201047663	0	1	1065	0
chr1	201046612	201048044	melanoma_Garraway_short_term_cultures.9407	0	.	201046612	201048044	0	1	1432	0
chr1	201046612	201047654	melanoma_Garraway_short_term_cultures.9406	0	+	201046612	201047654	0	2	509,329	0,713
chr1	201046617	201047809	Rinn_00002217	0	+	201046617	201047809	0	2	504,37	0,1155
chr1	201046628	201047662	MeWo_Garraway.4930	0	.	201046628	201047662	0	1	1034	0
chr1	201046638	201047692	HepG2_Caltech_ENCODE.4944	0	.	201046638	201047692	0	1	1054	0
chr1	201046638	201047630	HepG2_Caltech_ENCODE.4943	0	+	201046638	201047630	0	2	483,305	0,687
chr1	201046641	201047744	K562.6604	0	.	201046641	201047744	0	1	1103	0
chr1	201046651	201047486	CD4_Plagnol_resting.9086	0	.	201046651	201047486	0	1	835	0
chr1	201046651	201048019	REMC_MyoepithelialBreast.12958	0	.	201046651	201048019	0	1	1368	0
chr1	201046651	201048019	REMC_MyoepithelialBreast.12957	0	+	201046651	201048019	0	2	470,694	0,674
chr1	201046661	201047984	REMC_LuminalBreast.13816	0	.	201046661	201047984	0	1	1323	0
chr1	201046661	201047638	REMC_LuminalBreast.13815	0	+	201046661	201047638	0	2	460,313	0,664
chr1	201046663	201047649	prostate_normal.7786	0	.	201046663	201047649	0	1	986	0
chr1	201046672	201047961	BT474_Burge_Thompson.4274	0	+	201046672	201047961	0	2	449,636	0,653
chr1	201046672	201047961	BT474_Burge_Thompson.4275	0	.	201046672	201047961	0	1	1289	0
chr1	201046678	201047260	ZR751_Thompson.3396	0	.	201046678	201047260	0	1	582	0
chr1	201046684	201047118	breast_Burge.5580	0	.	201046684	201047118	0	1	434	0
chr1	201046684	201048196	prostate_carcinoma.12644	0	.	201046684	201048196	0	1	1512	0
chr1	201046717	201047143	MB435_Burge.5834	0	.	201046717	201047143	0	1	426	0
chr1	201046746	201047174	NEC_from_H9.10515	0	.	201046746	201047174	0	1	428	0
chr1	201046754	201047148	adipose_Burge.5422	0	.	201046754	201047148	0	1	394	0
chr1	201046810	201047592	MDAMB231_Thompson.3225	0	.	201046810	201047592	0	1	782	0
chr1	201046869	201047189	liver_polyA+.18317	0	.	201046869	201047189	0	1	320	0
chr1	201047099	201047658	HME_Burge.6080	0	.	201047099	201047658	0	1	559	0
chr1	201047127	201047643	MCF10A_Thompson.3172	0	.	201047127	201047643	0	1	516	0
chr1	201047139	201047834	MDAMB468_Thompson.3625	0	.	201047139	201047834	0	1	695	0
chr1	201047177	201047629	breast_Burge.5579	0	.	201047177	201047629	0	1	452	0
chr1	201047272	201047632	NEC_from_H9.10516	0	.	201047272	201047632	0	1	360	0
chr1	201047321	201047630	liver_polyA+.18318	0	.	201047321	201047630	0	1	309	0
chr1	201048354	201049274	H1_polyA+.15237	0	.	201048354	201049274	0	1	920	0
chr1	201068282	201071680	H1_polyA+.15241	0	.	201068282	201071680	0	1	3398	0
chr1	201069030	201069615	REMC_LuminalBreast.13819	0	.	201069030	201069615	0	1	585	0
chr1	201077757	201081972	H1_polyA+.15245	0	.	201077757	201081972	0	1	4215	0
chr1	201078734	201079686	REMC_LuminalBreast.13822	0	.	201078734	201079686	0	1	952	0
chr1	201082449	201082780	H9_polyA+.6308	0	.	201082449	201082780	0	1	331	0
chr1	201083895	201084215	H9_polyA+.6309	0	.	201083895	201084215	0	1	320	0
chr1	201096345	201097413	ZR751_Thompson.3405	0	.	201096345	201097413	0	1	1068	0
chr1	201111486	201112539	ZR751_Thompson.3408	0	.	201111486	201112539	0	1	1053	0
chr1	201111778	201112694	brain_AmbionMAQC.6069	0	.	201111778	201112694	0	1	916	0
chr1	201111795	201113291	CD4_Plagnol_activated.9352	0	.	201111795	201113291	0	1	1496	0
chr1	201111830	201113291	CD4_Plagnol_resting.9089	0	.	201111830	201113291	0	1	1461	0
chr1	201111876	201112559	K562.6613	0	.	201111876	201112559	0	1	683	0
chr1	201111949	201112349	CD4_Snyder.10341	0	.	201111949	201112349	0	1	400	0
chr1	201111985	201112551	BT20_Thompson.3130	0	.	201111985	201112551	0	1	566	0
chr1	201111991	201113063	melanoma_Garraway_short_term_cultures.9414	0	.	201111991	201113063	0	1	1072	0
chr1	201112022	201112350	MDAMB468_Thompson.3629	0	.	201112022	201112350	0	1	328	0
chr1	201113162	201113676	K562.6615	0	.	201113162	201113676	0	1	514	0
chr1	201324146	201324523	B_cells_Cheung.25072	0	.	201324146	201324523	0	1	377	0
chr1	201512020	201512998	B_Cells_Pritchard.397067	0	.	201512020	201512998	0	1	978	0
chr1	201514087	201514989	B_Cells_Pritchard.397075	0	.	201514087	201514989	0	1	902	0
chr1	201522284	201524767	REMC_LuminalBreast.13881	0	+	201522284	201524767	0	3	778,318,512	0,1455,1971
chr1	201523385	201528708	B_cells_Cheung.25105	0	+	201523385	201528708	0	3	197,318,4453	0,354,870
chr1	201523385	201528708	B_cells_Cheung.25107	0	.	201523385	201528708	0	1	5323	0
chr1	201523425	201524779	REMC_MyoepithelialBreast.13008	0	.	201523425	201524779	0	1	1354	0
chr1	201523428	201524553	CD4_Plagnol_activated.9379	0	.	201523428	201524553	0	1	1125	0
chr1	201523447	201524537	CD4_Plagnol_resting.9131	0	.	201523447	201524537	0	1	1090	0
chr1	201524905	201526288	CD4_Snyder.10391	0	.	201524905	201526288	0	1	1383	0
chr1	201525363	201527006	REMC_LuminalBreast.13882	0	.	201525363	201527006	0	1	1643	0
chr1	201525366	201526307	REMC_MyoepithelialBreast.13011	0	.	201525366	201526307	0	1	941	0
chr1	201525457	201526291	CD4_Plagnol_activated.9381	0	.	201525457	201526291	0	1	834	0
chr1	201526116	201526474	A549_Myers.8932	0	.	201526116	201526474	0	1	358	0
chr1	201527083	201528365	REMC_LuminalBreast.13883	0	.	201527083	201528365	0	1	1282	0
chr1	201531440	201533825	BT474_Burge_Thompson.4356	0	.	201531440	201533825	0	1	2385	0
chr1	201531957	201533809	B_cells_Cheung.25112	0	.	201531957	201533809	0	1	1852	0
chr1	201536916	201541010	ENST00000432511	0	-	201536916	201541010	0	3	116,186,203	0,3354,3891
chr1	201546812	201548122	B_cells_Cheung.25122	0	.	201546812	201548122	0	1	1310	0
chr1	201546816	201548105	CD4_Plagnol_activated.9382	0	.	201546816	201548105	0	1	1289	0
chr1	201546820	201548108	CD4_Plagnol_resting.9133	0	.	201546820	201548108	0	1	1288	0
chr1	201546854	201548100	CD4_Snyder.10393	0	.	201546854	201548100	0	1	1246	0
chr1	201547279	201548055	H1_polyA+.15288	0	.	201547279	201548055	0	1	776	0
chr1	201547568	201548111	melanoma_Garraway_short_term_cultures.9467	0	.	201547568	201548111	0	1	543	0
chr1	201549839	201550217	REMC_BreastStem.7321	0	.	201549839	201550217	0	1	378	0
chr1	201552275	201553278	CD4_Plagnol_resting.9137	0	.	201552275	201553278	0	1	1003	0
chr1	201553861	201554260	B_cells_Cheung.25128	0	.	201553861	201554260	0	1	399	0
chr1	201556745	201557648	CD4_Plagnol_activated.9390	0	.	201556745	201557648	0	1	903	0
chr1	201561088	201561477	CD4_Snyder.10396	0	.	201561088	201561477	0	1	389	0
chr1	201561518	201563237	REMC_MyoepithelialBreast.13018	0	.	201561518	201563237	0	1	1719	0
chr1	201561729	201565102	REMC_BreastStem.7292	0	.	201561729	201565102	0	1	3373	0
chr1	201561767	201562226	B_cells_Cheung.25132	0	.	201561767	201562226	0	1	459	0
chr1	201562415	201563157	CD4_Snyder.10397	0	.	201562415	201563157	0	1	742	0
chr1	201562694	201563269	CD4_Plagnol_activated.9391	0	.	201562694	201563269	0	1	575	0
chr1	201562819	201563503	B_cells_Cheung.25133	0	.	201562819	201563503	0	1	684	0
chr1	201562888	201563746	CD4_Plagnol_resting.9138	0	.	201562888	201563746	0	1	858	0
chr1	201562935	201563266	A549_Myers.8939	0	.	201562935	201563266	0	1	331	0
chr1	201563313	201565165	REMC_LuminalBreast.14002	0	.	201563313	201565165	0	1	1852	0
chr1	201563326	201563991	BT474_Burge_Thompson.4322	0	.	201563326	201563991	0	1	665	0
chr1	201563393	201563738	A549_Myers.8940	0	.	201563393	201563738	0	1	345	0
chr1	201566646	201568832	REMC_LuminalBreast.13892	0	.	201566646	201568832	0	1	2186	0
chr1	201566678	201567637	REMC_MyoepithelialBreast.13021	0	.	201566678	201567637	0	1	959	0
chr1	201568279	201569192	REMC_BreastStem.7295	0	.	201568279	201569192	0	1	913	0
chr1	201568919	201572354	REMC_LuminalBreast.13893	0	.	201568919	201572354	0	1	3435	0
chr1	201571050	201572601	REMC_BreastStem.7297	0	.	201571050	201572601	0	1	1551	0
chr1	201599787	201600591	BT474_Burge_Thompson.4325	0	.	201599787	201600591	0	1	804	0
chr1	201607767	201616219	BT474_Burge_Thompson.4336	0	+	201607767	201616219	0	3	75,132,721	0,6637,7731
chr1	201621251	201621814	BT474_Burge_Thompson.4343	0	.	201621251	201621814	0	1	563	0
chr1	201630676	201631256	BT474_Burge_Thompson.4347	0	.	201630676	201631256	0	1	580	0
chr1	201656395	201657037	BT474_Burge_Thompson.4352	0	.	201656395	201657037	0	1	642	0
chr1	201660500	201661281	prostate_carcinoma.12715	0	.	201660500	201661281	0	1	781	0
chr1	201660657	201661200	BT474_Burge_Thompson.4326	0	.	201660657	201661200	0	1	543	0
chr1	201662689	201665027	prostate_carcinoma.12710	0	.	201662689	201665027	0	2	510,1372	0,966
chr1	201662763	201663847	prostate_normal.7842	0	.	201662763	201663847	0	1	1084	0
chr1	201663909	201664737	prostate_normal.7841	0	.	201663909	201664737	0	1	828	0
chr1	201699771	201700113	BT474_Burge_Thompson.4330	0	.	201699771	201700113	0	1	342	0
chr1	201705936	201706358	BT474_Burge_Thompson.4331	0	.	201705936	201706358	0	1	422	0
chr1	202111538	202115870	REMC_LuminalBreast.13925	0	.	202111538	202115870	0	1	4332	0
chr1	202112986	202115286	H1_polyA+.15339	0	.	202112986	202115286	0	1	2300	0
chr1	202136099	202136441	B_Cells_Pritchard.398877	0	.	202136099	202136441	0	1	342	0
chr1	202147496	202148257	REMC_MyoepithelialBreast.13086	0	.	202147496	202148257	0	1	761	0
chr1	202364630	202365678	MIP101.9014	0	.	202364630	202365678	0	1	1048	0
chr1	202364863	202365493	A549_Myers.9002	0	.	202364863	202365493	0	1	630	0
chr1	202597143	202599161	REMC_LuminalBreast.13997	0	.	202597143	202599161	0	1	2018	0
chr1	202597436	202599168	REMC_MyoepithelialBreast.13129	0	.	202597436	202599168	0	1	1732	0
chr1	202599210	202600208	A549_Myers.9034	0	.	202599210	202600208	0	1	998	0
chr1	202600956	202601984	prostate_carcinoma.12801	0	.	202600956	202601984	0	1	1028	0
chr1	202602597	202614404	A549_Myers.9033	0	-	202602597	202614404	0	3	1010,112,1071	0,4648,10736
chr1	202602762	202603259	B_Cells_Pritchard.400253	0	.	202602762	202603259	0	1	497	0
chr1	202603514	202614109	B_cells_Cheung.25297	0	-	202603514	202614109	0	3	93,77,776	0,3766,9819
chr1	202604165	202605470	HIT000088698	0	-	202604165	202605470	0	1	1305	0
chr1	202604180	202605470	NR_027022	0	-	202604180	202605470	0	1	1290	0
chr1	202604206	202604788	REMC_MyoepithelialBreast.13179	0	.	202604206	202604788	0	1	582	0
chr1	202604271	202605216	prostate_carcinoma.12915	0	.	202604271	202605216	0	1	945	0
chr1	202604316	202605647	REMC_LuminalBreast.13998	0	.	202604316	202605647	0	1	1331	0
chr1	202605577	202614053	prostate_normal.7909	0	-	202605577	202614053	0	3	557,77,720	0,1703,7756
chr1	202609606	202610270	B_Cells_Pritchard.400287	0	.	202609606	202610270	0	1	664	0
chr1	202613345	202613939	BT20_Thompson.3184	0	.	202613345	202613939	0	1	594	0
chr1	202613350	202613778	liver_polyA+.18515	0	.	202613350	202613778	0	1	428	0
chr1	202613354	202613897	HeLa_polyA-_Chen.2686	0	.	202613354	202613897	0	1	543	0
chr1	202613354	202614119	B_Cells_Pritchard.400305	0	.	202613354	202614119	0	1	765	0
chr1	202613411	202613957	H9_polyA+.6406	0	.	202613411	202613957	0	1	546	0
chr1	202619448	202619945	HeLa_polyA+_Chen.5042	0	.	202619448	202619945	0	1	497	0
chr1	202631708	202632942	BT20_Thompson.3186	0	.	202631708	202632942	0	1	1234	0
chr1	202632342	202633002	MeWo_Garraway.5044	0	.	202632342	202633002	0	1	660	0
chr1	202632547	202632950	brain_AmbionMAQC.6159	0	.	202632547	202632950	0	1	403	0
chr1	202633181	202636659	MDAMB468_Thompson.3695	0	-	202633181	202636659	0	2	2120,256	0,3222
chr1	202648655	202651015	REMC_MyoepithelialBreast.13141	0	.	202648655	202651015	0	1	2360	0
chr1	202649653	202650791	H1_polyA+.15381	0	.	202649653	202650791	0	1	1138	0
chr1	202649657	202650798	B_cells_Cheung.25648	0	.	202649657	202650798	0	1	1141	0
chr1	202650955	202652484	H1_polyA+.15382	0	.	202650955	202652484	0	1	1529	0
chr1	202652724	202655631	B_cells_Cheung.25651	0	.	202652724	202655631	0	1	2907	0
chr1	202652830	202655499	REMC_MyoepithelialBreast.13143	0	.	202652830	202655499	0	1	2669	0
chr1	202652893	202655454	H1_polyA+.15383	0	.	202652893	202655454	0	1	2561	0
chr1	202652895	202656070	REMC_LuminalBreast.14003	0	.	202652895	202656070	0	1	3175	0
chr1	202654605	202655329	prostate_carcinoma.12923	0	.	202654605	202655329	0	1	724	0
chr1	202932222	202932597	B_cells_Cheung.25366	0	.	202932222	202932597	0	1	375	0
chr1	202934396	202935033	K562.6695	0	.	202934396	202935033	0	1	637	0
chr1	202934603	202935521	B_Cells_Pritchard.400969	0	.	202934603	202935521	0	1	918	0
chr1	202938225	202938776	B_cells_Cheung.25368	0	.	202938225	202938776	0	1	551	0
chr1	202939903	202940603	B_Cells_Pritchard.400993	0	.	202939903	202940603	0	1	700	0
chr1	202942282	202942798	B_Cells_Pritchard.401001	0	.	202942282	202942798	0	1	516	0
chr1	202985435	202985853	A549_Myers.9110	0	.	202985435	202985853	0	1	418	0
chr1	202987755	202988059	A549_Myers.9111	0	.	202987755	202988059	0	1	304	0
chr1	202990626	203050125	pHIT000003246	0	+	202990626	203050125	0	5	18,53,156,28,117	0,3991,52371,52657,59382
chr1	203267975	203269575	REMC_MyoepithelialBreast.13184	0	.	203267975	203269575	0	1	1600	0
chr1	203367596	203368555	REMC_MyoepithelialBreast.13200	0	.	203367596	203368555	0	1	959	0
chr1	203367649	203368451	H1_polyA+.15445	0	.	203367649	203368451	0	1	802	0
chr1	203375453	203376434	H1_polyA+.15447	0	.	203375453	203376434	0	1	981	0
chr1	203375765	203376104	B_cells_Cheung.25399	0	.	203375765	203376104	0	1	339	0
chr1	203375781	203376345	melanoma_Garraway_short_term_cultures.9599	0	.	203375781	203376345	0	1	564	0
chr1	203517341	203518272	H1_polyA+.15461	0	.	203517341	203518272	0	1	931	0
chr1	203518098	203530923	H1_polyA+.15463	0	-	203518098	203530923	0	2	195,140	0,12685
chr1	203522098	203523328	REMC_BreastStem.7396	0	.	203522098	203523328	0	1	1230	0
chr1	203528352	203528971	REMC_BreastStem.7397	0	.	203528352	203528971	0	1	619	0
chr1	203528367	203529854	REMC_MyoepithelialBreast.13215	0	.	203528367	203529854	0	1	1487	0
chr1	203531943	203534930	REMC_BreastStem.7400	0	.	203531943	203534930	0	1	2987	0
chr1	203532107	203533541	H1_polyA+.15464	0	.	203532107	203533541	0	1	1434	0
chr1	203534054	203534931	A549_Myers.9190	0	.	203534054	203534931	0	1	877	0
chr1	203691807	203704775	Rinn_00000064	0	+	203691807	203704775	0	3	167,187,2405	0,834,10563
chr1	203692062	203692571	A549_Myers.9205	0	.	203692062	203692571	0	1	509	0
chr1	203692373	203695354	H9_polyA+.6484	0	+	203692373	203695354	0	2	455,1805	0,1176
chr1	203692373	203693267	H9_polyA+.6485	0	.	203692373	203693267	0	1	894	0
chr1	203693345	203695354	H9_polyA+.6486	0	.	203693345	203695354	0	1	2009	0
chr1	203694795	203695279	B_Cells_Pritchard.403011	0	-	203694795	203695279	0	1	484	0
chr1	203694803	203695372	NEC_from_H9.10742	0	.	203694803	203695372	0	1	569	0
chr1	203702401	203703138	NEC_from_H9.10746	0	.	203702401	203703138	0	1	737	0
chr1	203702418	203703188	H9_polyA+.6487	0	.	203702418	203703188	0	1	770	0
chr1	203703381	203703836	H9_polyA+.6488	0	.	203703381	203703836	0	1	455	0
chr1	203704874	203705259	H9_polyA+.6491	0	.	203704874	203705259	0	1	385	0
chr1	204091074	204102602	REMC_MyoepithelialBreast.13395	0	.	204091074	204102602	0	1	11528	0
chr1	204091110	204102619	REMC_LuminalBreast.14172	0	.	204091110	204102619	0	1	11509	0
chr1	204093856	204094693	MCF7_Burge_Thompson.4436	0	.	204093856	204094693	0	1	837	0
chr1	204094865	204095422	MIP101.9681	0	.	204094865	204095422	0	1	557	0
chr1	204097932	204098709	MCF7_Burge_Thompson.4437	0	.	204097932	204098709	0	1	777	0
chr1	204098174	204098644	H9_polyA+.6522	0	.	204098174	204098644	0	1	470	0
chr1	204098187	204098704	melanoma_Garraway_short_term_cultures.9679	0	.	204098187	204098704	0	1	517	0
chr1	204098256	204099357	MIP101.9690	0	.	204098256	204099357	0	1	1101	0
chr1	204102732	204109628	REMC_LuminalBreast.14173	0	.	204102732	204109628	0	1	6896	0
chr1	204102790	204120165	REMC_MyoepithelialBreast.13396	0	.	204102790	204120165	0	1	17375	0
chr1	204103847	204104193	prostate_carcinoma.12969	0	.	204103847	204104193	0	1	346	0
chr1	204109793	204120154	REMC_LuminalBreast.14174	0	.	204109793	204120154	0	1	10361	0
chr1	204115221	204115857	H9_polyA+.6523	0	.	204115221	204115857	0	1	636	0
chr1	204126835	204127262	H9_polyA+.6529	0	.	204126835	204127262	0	1	427	0
chr1	204128826	204131953	REMC_LuminalBreast.14176	0	.	204128826	204131953	0	1	3127	0
chr1	204129907	204132761	REMC_MyoepithelialBreast.13400	0	.	204129907	204132761	0	1	2854	0
chr1	204132541	204133559	REMC_LuminalBreast.14177	0	.	204132541	204133559	0	1	1018	0
chr1	204134672	204136094	REMC_MyoepithelialBreast.13326	0	.	204134672	204136094	0	1	1422	0
chr1	204136144	204136685	REMC_MyoepithelialBreast.13327	0	.	204136144	204136685	0	1	541	0
chr1	204136154	204136648	H9_polyA+.6533	0	.	204136154	204136648	0	1	494	0
chr1	204136182	204137151	REMC_LuminalBreast.14179	0	.	204136182	204137151	0	1	969	0
chr1	204137790	204138180	REMC_MyoepithelialBreast.13330	0	.	204137790	204138180	0	1	390	0
chr1	204268985	204291494	pHIT000098888	0	+	204268985	204291494	0	3	142,100,128	0,13155,22381
chr1	204399897	204400753	B_Cells_Pritchard.404335	0	.	204399897	204400753	0	1	856	0
chr1	204400284	204400950	prostate_carcinoma.12997	0	.	204400284	204400950	0	1	666	0
chr1	204400443	204401004	B_cells_Cheung.25615	0	.	204400443	204401004	0	1	561	0
chr1	204707131	204707788	melanoma_Garraway_short_term_cultures.9695	0	.	204707131	204707788	0	1	657	0
chr1	204708195	204709012	melanoma_Garraway_short_term_cultures.9696	0	.	204708195	204709012	0	1	817	0
chr1	204738870	204740132	REMC_MyoepithelialBreast.13342	0	.	204738870	204740132	0	1	1262	0
chr1	204739525	204740410	MCF10A_Thompson.3281	0	.	204739525	204740410	0	1	885	0
chr1	204739529	204740353	CD4_Plagnol_activated.9634	0	.	204739529	204740353	0	1	824	0
chr1	204739556	204740298	MDAMB468_Thompson.3743	0	.	204739556	204740298	0	1	742	0
chr1	204739557	204740313	prostate_normal.8011	0	.	204739557	204740313	0	1	756	0
chr1	204739560	204740313	BT20_Thompson.3247	0	.	204739560	204740313	0	1	753	0
chr1	204739568	204740384	MIP101.9145	0	.	204739568	204740384	0	1	816	0
chr1	204739924	204740353	HeLa_polyA+_Chen.5106	0	.	204739924	204740353	0	1	429	0
chr1	204740521	204744414	H1_polyA+.15589	0	.	204740521	204744414	0	1	3893	0
chr1	204740770	204743618	REMC_MyoepithelialBreast.13343	0	.	204740770	204743618	0	1	2848	0
chr1	204740886	204744373	CD4_Plagnol_activated.9635	0	.	204740886	204744373	0	1	3487	0
chr1	204740971	204743268	MCF10A_Thompson.3282	0	.	204740971	204743268	0	1	2297	0
chr1	204740977	204744334	CD4_Plagnol_resting.9387	0	.	204740977	204744334	0	1	3357	0
chr1	204740980	204741506	ZR751_Thompson.3537	0	.	204740980	204741506	0	1	526	0
chr1	204740984	204743528	prostate_normal.8009	0	.	204740984	204743528	0	1	2544	0
chr1	204740992	204743661	BT20_Thompson.3248	0	.	204740992	204743661	0	1	2669	0
chr1	204741225	204741594	A549_Myers.9291	0	.	204741225	204741594	0	1	369	0
chr1	204741510	204742807	MDAMB231_Thompson.3328	0	.	204741510	204742807	0	1	1297	0
chr1	204980837	204983846	B_Cells_Pritchard.405613	0	.	204980837	204983846	0	1	3009	0
chr1	204981011	204981742	CD4_Plagnol_resting.9392	0	.	204981011	204981742	0	1	731	0
chr1	204981013	204982178	B_cells_Cheung.25715	0	.	204981013	204982178	0	1	1165	0
chr1	204982214	204983848	ZR751_Thompson.3572	0	.	204982214	204983848	0	1	1634	0
chr1	204982996	204983817	CD4_Plagnol_activated.9659	0	.	204982996	204983817	0	1	821	0
chr1	204983459	204983842	B_cells_Cheung.25717	0	.	204983459	204983842	0	1	383	0
chr1	204988801	204989772	melanoma_Garraway_short_term_cultures.9725	0	.	204988801	204989772	0	1	971	0
chr1	204989162	204990076	prostate_carcinoma.13017	0	.	204989162	204990076	0	1	914	0
chr1	204989163	204991034	CD4_Plagnol_activated.9665	0	.	204989163	204991034	0	1	1871	0
chr1	204989330	204990130	B_cells_Cheung.25724	0	.	204989330	204990130	0	1	800	0
chr1	204989386	204990748	prostate_normal.8039	0	.	204989386	204990748	0	1	1362	0
chr1	204989561	204990473	CD4_Plagnol_resting.9398	0	.	204989561	204990473	0	1	912	0
chr1	204995851	205003198	REMC_LuminalBreast.14244	0	.	204995851	205003198	0	1	7347	0
chr1	205017186	205021810	B_cells_Cheung.25734	0	.	205017186	205021810	0	1	4624	0
chr1	205017349	205021322	REMC_LuminalBreast.14249	0	.	205017349	205021322	0	1	3973	0
chr1	205017360	205021798	B_Cells_Pritchard.405669	0	+	205017360	205021798	0	3	1583,759,1928	0,1689,2510
chr1	205017378	205021789	REMC_MyoepithelialBreast.13432	0	.	205017378	205021789	0	1	4411	0
chr1	205017409	205020155	REMC_BreastStem.7531	0	.	205017409	205020155	0	1	2746	0
chr1	205021407	205021848	REMC_LuminalBreast.14250	0	.	205021407	205021848	0	1	441	0
chr1	205022049	205025406	REMC_MyoepithelialBreast.13429	0	.	205022049	205025406	0	1	3357	0
chr1	205022057	205032527	B_cells_Cheung.25735	0	.	205022057	205032527	0	1	10470	0
chr1	205022101	205029439	B_Cells_Pritchard.405673	0	.	205022101	205029439	0	1	7338	0
chr1	205022305	205023917	REMC_BreastStem.7534	0	.	205022305	205023917	0	1	1612	0
chr1	205022499	205024713	REMC_LuminalBreast.14251	0	.	205022499	205024713	0	1	2214	0
chr1	205026009	205029781	REMC_MyoepithelialBreast.13433	0	.	205026009	205029781	0	1	3772	0
chr1	205132819	205134541	CD4_Plagnol_resting.9683	0	.	205132819	205134541	0	1	1722	0
chr1	205133270	205134797	REMC_MyoepithelialBreast.13450	0	.	205133270	205134797	0	1	1527	0
chr1	205163277	205164501	CD4_Plagnol_resting.9408	0	.	205163277	205164501	0	1	1224	0
chr1	205163337	205164135	CD4_Plagnol_activated.9684	0	.	205163337	205164135	0	1	798	0
chr1	205163473	205164584	Rinn_00002569	0	-	205163473	205164584	0	2	863,169	0,942
chr1	205164800	205165819	B_Cells_Pritchard.456813	0	-	205164800	205165819	0	1	1019	0
chr1	205246938	205250100	REMC_BreastStem.7543	0	.	205246938	205250100	0	1	3162	0
chr1	205248055	205250492	prostate_carcinoma.13057	0	.	205248055	205250492	0	1	2437	0
chr1	205248735	205251959	prostate_carcinoma.13059	0	+	205248735	205251959	0	2	1468,174	0,3050
chr1	205253271	205254168	REMC_BreastStem.7544	0	.	205253271	205254168	0	1	897	0
chr1	205444493	205444907	B_Cells_Pritchard.406715	0	.	205444493	205444907	0	1	414	0
chr1	205474978	205475764	B_cells_Cheung.25814	0	.	205474978	205475764	0	1	786	0
chr1	205495171	205495546	B_cells_Cheung.25839	0	.	205495171	205495546	0	1	375	0
chr1	205495609	205495953	B_cells_Cheung.25847	0	.	205495609	205495953	0	1	344	0
chr1	205508357	205509838	B_cells_Cheung.25939	0	.	205508357	205509838	0	1	1481	0
chr1	205512594	205514387	B_cells_Cheung.25964	0	.	205512594	205514387	0	1	1793	0
chr1	205513196	205514657	REMC_MyoepithelialBreast.13489	0	.	205513196	205514657	0	1	1461	0
chr1	205520855	205522398	B_cells_Cheung.25970	0	.	205520855	205522398	0	1	1543	0
chr1	205520915	205521460	B_Cells_Pritchard.407009	0	.	205520915	205521460	0	1	545	0
chr1	205521879	205523474	REMC_MyoepithelialBreast.13492	0	.	205521879	205523474	0	1	1595	0
chr1	205554362	205555819	REMC_MyoepithelialBreast.13496	0	.	205554362	205555819	0	1	1457	0
chr1	205555208	205555793	B_Cells_Pritchard.407163	0	.	205555208	205555793	0	1	585	0
chr1	205555272	205557365	B_cells_Cheung.26037	0	.	205555272	205557365	0	1	2093	0
chr1	205555357	205556839	REMC_LuminalBreast.14301	0	.	205555357	205556839	0	1	1482	0
chr1	205555492	205555818	REMC_BreastStem.7555	0	.	205555492	205555818	0	1	326	0
chr1	205556690	205557187	B_Cells_Pritchard.407169	0	.	205556690	205557187	0	1	497	0
chr1	205556934	205558409	REMC_LuminalBreast.14302	0	.	205556934	205558409	0	1	1475	0
chr1	205557469	205558573	B_Cells_Pritchard.407173	0	.	205557469	205558573	0	1	1104	0
chr1	205557474	205558824	B_cells_Cheung.26036	0	.	205557474	205558824	0	1	1350	0
chr1	205607430	205607905	CD4_Snyder.10601	0	.	205607430	205607905	0	1	475	0
chr1	205610903	205612394	B_Cells_Pritchard.407209	0	.	205610903	205612394	0	1	1491	0
chr1	205612142	205612463	B_cells_Cheung.26045	0	.	205612142	205612463	0	1	321	0
chr1	205612182	205612502	CD4_Snyder.10604	0	.	205612182	205612502	0	1	320	0
chr1	205622291	205624668	B_cells_Cheung.26057	0	.	205622291	205624668	0	1	2377	0
chr1	205622976	205625786	REMC_LuminalBreast.14312	0	.	205622976	205625786	0	1	2810	0
chr1	205624720	205625370	B_cells_Cheung.26058	0	.	205624720	205625370	0	1	650	0
chr1	205624757	205629022	REMC_MyoepithelialBreast.13596	0	.	205624757	205629022	0	1	4265	0
chr1	205625165	205629379	REMC_BreastStem.7558	0	.	205625165	205629379	0	1	4214	0
chr1	205625515	205626007	B_Cells_Pritchard.407263	0	.	205625515	205626007	0	1	492	0
chr1	205636720	205638204	REMC_LuminalBreast.14317	0	.	205636720	205638204	0	1	1484	0
chr1	205637432	205639266	B_cells_Cheung.26072	0	.	205637432	205639266	0	1	1834	0
chr1	205657969	205660264	B_cells_Cheung.26089	0	.	205657969	205660264	0	1	2295	0
chr1	205660514	205664251	B_cells_Cheung.26094	0	.	205660514	205664251	0	1	3737	0
chr1	205660567	205662344	HIT000006646	0	-	205660567	205662344	0	1	1777	0
chr1	205660815	205665695	B_Cells_Pritchard.407313	0	-	205660815	205665695	0	2	3397,1288	0,3592
chr1	205664395	205669173	B_cells_Cheung.26095	0	.	205664395	205669173	0	1	4778	0
chr1	205664474	205665144	MCF7_Burge_Thompson.4448	0	.	205664474	205665144	0	1	670	0
chr1	205677204	205678563	B_cells_Cheung.26102	0	.	205677204	205678563	0	1	1359	0
chr1	205677320	205678149	B_Cells_Pritchard.407349	0	.	205677320	205678149	0	1	829	0
chr1	206042810	206051222	brain_AmbionMAQC.6325	0	.	206042810	206051222	0	1	8412	0
chr1	206042825	206048073	CD4_Plagnol_activated.9740	0	.	206042825	206048073	0	1	5248	0
chr1	206043325	206049002	HepG2_Caltech_ENCODE.5129	0	.	206043325	206049002	0	1	5677	0
chr1	206045595	206046684	ZR751_Thompson.3591	0	.	206045595	206046684	0	1	1089	0
chr1	206045782	206046614	BT474_Burge_Thompson.4514	0	.	206045782	206046614	0	1	832	0
chr1	206045792	206046866	liver_polyA+.18938	0	.	206045792	206046866	0	1	1074	0
chr1	206045950	206047144	REMC_BreastStem.7572	0	.	206045950	206047144	0	1	1194	0
chr1	206046036	206047104	T47D_Burge_Thompson.3990	0	.	206046036	206047104	0	1	1068	0
chr1	206046270	206047072	HeLa_polyA+_Chen.5146	0	.	206046270	206047072	0	1	802	0
chr1	206046395	206047365	MCF7_Burge_Thompson.4456	0	.	206046395	206047365	0	1	970	0
chr1	206046437	206046953	lymph_node_Burge.7458	0	.	206046437	206046953	0	1	516	0
chr1	206046468	206047424	CD4_Plagnol_resting.9501	0	.	206046468	206047424	0	1	956	0
chr1	206046532	206046888	A549_Myers.9382	0	.	206046532	206046888	0	1	356	0
chr1	206046917	206047640	liver_polyA+.18939	0	.	206046917	206047640	0	1	723	0
chr1	206047213	206049225	REMC_BreastStem.7573	0	.	206047213	206049225	0	1	2012	0
chr1	206047702	206048155	liver_polyA+.18940	0	.	206047702	206048155	0	1	453	0
chr1	206048261	206050242	CD4_Plagnol_activated.9741	0	.	206048261	206050242	0	1	1981	0
chr1	206048542	206050289	H1_polyA+.15644	0	.	206048542	206050289	0	1	1747	0
chr1	206048792	206049528	T47D_Burge_Thompson.3993	0	.	206048792	206049528	0	1	736	0
chr1	206048795	206051574	CD4_Plagnol_resting.9503	0	.	206048795	206051574	0	1	2779	0
chr1	206048849	206049935	liver_polyA+.18942	0	.	206048849	206049935	0	1	1086	0
chr1	206049070	206052647	HepG2_Caltech_ENCODE.5130	0	.	206049070	206052647	0	1	3577	0
chr1	206049125	206050101	MIP101.9199	0	.	206049125	206050101	0	1	976	0
chr1	206049158	206049684	K562.6836	0	.	206049158	206049684	0	1	526	0
chr1	206050278	206052804	liver_polyA+.18943	0	.	206050278	206052804	0	1	2526	0
chr1	206199145	206199572	A549_Myers.9399	0	.	206199145	206199572	0	1	427	0
chr1	206199239	206202007	prostate_normal.8133	0	.	206199239	206202007	0	1	2768	0
chr1	206199330	206201578	Rinn_00001254	0	+	206199330	206201578	0	3	477,69,291	0,751,1957
chr1	206199811	206201995	prostate_carcinoma.13087	0	.	206199811	206201995	0	1	2184	0
chr1	206202118	206208028	prostate_carcinoma.13088	0	.	206202118	206208028	0	1	5910	0
chr1	206202463	206206503	prostate_normal.8134	0	.	206202463	206206503	0	1	4040	0
chr1	206203229	206204044	A549_Myers.9401	0	.	206203229	206204044	0	1	815	0
chr1	206203617	206205888	Rinn_00001255	0	+	206203617	206205888	0	2	314,1396	0,875
chr1	206204280	206205491	REMC_LuminalBreast.14363	0	.	206204280	206205491	0	1	1211	0
chr1	206207241	206207978	REMC_LuminalBreast.14365	0	.	206207241	206207978	0	1	737	0
chr1	206500659	206506886	Rinn_00001256	0	+	206500659	206506886	0	2	84,392	0,5835
chr1	206853290	206853785	B_cells_Cheung.26227	0	.	206853290	206853785	0	1	495	0
chr1	206853381	206854296	H1_polyA+.15657	0	.	206853381	206854296	0	1	915	0
chr1	206875870	206876176	B_Cells_Pritchard.410149	0	+	206875870	206876176	0	1	306	0
chr1	206887485	206888018	B_cells_Cheung.26232	0	.	206887485	206888018	0	1	533	0
chr1	206921023	206922191	B_cells_Cheung.26252	0	.	206921023	206922191	0	1	1168	0
chr1	206992830	206993848	H1_polyA+.15659	0	.	206992830	206993848	0	1	1018	0
chr1	207019276	207019637	B_cells_Cheung.26277	0	.	207019276	207019637	0	1	361	0
chr1	207019284	207019770	B_Cells_Pritchard.410595	0	.	207019284	207019770	0	1	486	0
chr1	207050380	207052096	B_cells_Cheung.26301	0	.	207050380	207052096	0	1	1716	0
chr1	207050544	207052106	B_Cells_Pritchard.410725	0	.	207050544	207052106	0	1	1562	0
chr1	207093481	207093934	B_cells_Cheung.26313	0	.	207093481	207093934	0	1	453	0
chr1	207160687	207161216	B_cells_Cheung.26332	0	.	207160687	207161216	0	1	529	0
chr1	207612007	207614491	prostate_carcinoma.13116	0	+	207612007	207614491	0	2	175,1130	0,1354
chr1	207642836	207643815	REMC_LuminalBreast.14398	0	.	207642836	207643815	0	1	979	0
chr1	207692718	207697914	H1_polyA+.15665	0	+	207692718	207697914	0	2	581,3979	0,1217
chr1	207762860	207764093	melanoma_Garraway_short_term_cultures.9793	0	.	207762860	207764093	0	1	1233	0
chr1	207769391	207769819	A549_Myers.9451	0	.	207769391	207769819	0	1	428	0
chr1	207772670	207773827	melanoma_Garraway_short_term_cultures.9796	0	.	207772670	207773827	0	1	1157	0
chr1	207773321	207774169	REMC_MyoepithelialBreast.13586	0	.	207773321	207774169	0	1	848	0
chr1	207775527	207776276	melanoma_Garraway_short_term_cultures.9797	0	.	207775527	207776276	0	1	749	0
chr1	207784973	207785276	HME_Burge.6362	0	.	207784973	207785276	0	1	303	0
chr1	207785145	207786159	REMC_LuminalBreast.14404	0	.	207785145	207786159	0	1	1014	0
chr1	207800036	207804643	REMC_MyoepithelialBreast.15537	0	.	207800036	207804643	0	1	4607	0
chr1	207803396	207804292	REMC_LuminalBreast.14407	0	.	207803396	207804292	0	1	896	0
chr1	207809293	207810325	REMC_LuminalBreast.14409	0	.	207809293	207810325	0	1	1032	0
chr1	207816681	207817017	A549_Myers.9452	0	.	207816681	207817017	0	1	336	0
chr1	207817163	207818273	REMC_BreastStem.7604	0	-	207817163	207818273	0	2	144,849	0,261
chr1	207905457	207908469	prostate_carcinoma.13127	0	.	207905457	207908469	0	1	3012	0
chr1	207906857	207908639	B_Cells_Pritchard.413019	0	.	207906857	207908639	0	1	1782	0
chr1	207907374	207907720	adipose_Raymond.10878	0	.	207907374	207907720	0	1	346	0
chr1	207907473	207908357	H1_polyA+.15680	0	.	207907473	207908357	0	1	884	0
chr1	207910631	207912196	REMC_MyoepithelialBreast.13600	0	.	207910631	207912196	0	1	1565	0
chr1	207918318	207921697	REMC_MyoepithelialBreast.13605	0	.	207918318	207921697	0	1	3379	0
chr1	207985949	207987765	REMC_MyoepithelialBreast.13629	0	.	207985949	207987765	0	1	1816	0
chr1	207985973	207988963	REMC_BreastStem.7644	0	.	207985973	207988963	0	1	2990	0
chr1	207987661	207994586	REMC_LuminalBreast.14770	0	.	207987661	207994586	0	1	6925	0
chr1	207987909	207988889	REMC_MyoepithelialBreast.13630	0	.	207987909	207988889	0	1	980	0
chr1	207989947	207992787	REMC_MyoepithelialBreast.13631	0	.	207989947	207992787	0	1	2840	0
chr1	207991366	207992659	MCF10A_Thompson.3454	0	.	207991366	207992659	0	1	1293	0
chr1	208099168	208099552	CD4_Plagnol_resting.9474	0	.	208099168	208099552	0	1	384	0
chr1	208406523	208410804	melanoma_Garraway_short_term_cultures.9812	0	.	208406523	208410804	0	1	4281	0
chr1	208406917	208408455	H9_polyA+.6601	0	.	208406917	208408455	0	1	1538	0
chr1	208406996	208408037	NEC_from_H9.10938	0	.	208406996	208408037	0	1	1041	0
chr1	208407080	208407582	MeI_Garraway.2680	0	.	208407080	208407582	0	1	502	0
chr1	208491254	208491855	A549_Myers.9491	0	.	208491254	208491855	0	1	601	0
chr1	208491985	208492676	melanoma_Garraway_short_term_cultures.9818	0	.	208491985	208492676	0	1	691	0
chr1	208532649	208533691	H1_polyA+.15756	0	.	208532649	208533691	0	1	1042	0
chr1	208532792	208533866	prostate_carcinoma.13159	0	.	208532792	208533866	0	1	1074	0
chr1	208533021	208533850	ZR751_Thompson.3627	0	.	208533021	208533850	0	1	829	0
chr1	208533055	208533891	MCF7_Burge_Thompson.4484	0	.	208533055	208533891	0	1	836	0
chr1	209617149	209618411	prostate_carcinoma.13218	0	.	209617149	209618411	0	1	1262	0
chr1	209618050	209618393	MIP101.9265	0	.	209618050	209618393	0	1	343	0
chr1	209618071	209618411	CD4_Plagnol_resting.9516	0	.	209618071	209618411	0	1	340	0
chr1	209622739	209623098	pHIT000003345	0	-	209622739	209623098	0	2	180,123	0,236
chr1	209665791	209674379	B_Cells_Pritchard.417201	0	+	209665791	209674379	0	3	457,603,479	0,6492,8109
chr1	209666169	209672991	T47D_Burge_Thompson.4061	0	+	209666169	209672991	0	2	79,708	0,6114
chr1	209666174	209673069	liver_polyA+.19179	0	+	209666174	209673069	0	2	74,786	0,6109
chr1	209666174	209673134	BT474_Burge_Thompson.4568	0	+	209666174	209673134	0	2	74,851	0,6109
chr1	209666177	209673103	MDAMB468_Thompson.3813	0	+	209666177	209673103	0	2	71,820	0,6106
chr1	209672293	209673044	MCF10A_Thompson.3357	0	.	209672293	209673044	0	1	751	0
chr1	209672616	209673084	brain_AmbionMAQC.6421	0	.	209672616	209673084	0	1	468	0
chr1	209672664	209674776	HeLa_polyA+_Chen.5200	0	.	209672664	209674776	0	1	2112	0
chr1	209672763	209673108	MDAMB231_Thompson.3398	0	.	209672763	209673108	0	1	345	0
chr1	209685825	209689186	H1_polyA+.15808	0	.	209685825	209689186	0	1	3361	0
chr1	209709956	209710466	A549_Myers.9559	0	.	209709956	209710466	0	1	510	0
chr1	209752744	209756689	pHIT000003356	0	-	209752744	209756689	0	3	275,158,125	0,1403,3820
chr1	209764394	209769111	A549_Myers.9569	0	-	209764394	209769111	0	2	224,102	0,4615
chr1	209821020	209822026	REMC_LuminalBreast.14470	0	.	209821020	209822026	0	1	1006	0
chr1	209823016	209824788	HepG2_Caltech_ENCODE.5185	0	.	209823016	209824788	0	1	1772	0
chr1	209823185	209824293	B_cells_Cheung.26536	0	.	209823185	209824293	0	1	1108	0
chr1	209823225	209824133	HeLa_polyA+_Chen.5203	0	.	209823225	209824133	0	1	908	0
chr1	209840868	209846731	B_cells_Cheung.26544	0	.	209840868	209846731	0	1	5863	0
chr1	209841121	209847289	HepG2_Caltech_ENCODE.5195	0	.	209841121	209847289	0	1	6168	0
chr1	209841769	209847107	B_Cells_Pritchard.417793	0	-	209841769	209847107	0	2	12,5191	0,147
chr1	209841955	209846983	K562.6937	0	.	209841955	209846983	0	1	5028	0
chr1	209844228	209846808	BT20_Thompson.3290	0	.	209844228	209846808	0	1	2580	0
chr1	209844387	209846476	MDAMB468_Thompson.3818	0	.	209844387	209846476	0	1	2089	0
chr1	209845711	209846504	T47D_Burge_Thompson.4071	0	.	209845711	209846504	0	1	793	0
chr1	209860098	209860409	A549_Myers.9573	0	.	209860098	209860409	0	1	311	0
chr1	209879671	209883937	HeLa_polyA+_Chen.5218	0	.	209879671	209883937	0	1	4266	0
chr1	209879671	209886593	HeLa_polyA+_Chen.5221	0	-	209879671	209886593	0	2	3171,2671	0,4251
chr1	209882854	209884080	HeLa_polyA-_Chen.2821	0	.	209882854	209884080	0	1	1226	0
chr1	209886812	209892711	HeLa_polyA+_Chen.5222	0	.	209886812	209892711	0	1	5899	0
chr1	209890575	209891244	HeLa_polyA-_Chen.2823	0	.	209890575	209891244	0	1	669	0
chr1	209896821	209897554	HeLa_polyA+_Chen.5205	0	.	209896821	209897554	0	1	733	0
chr1	209921727	209927424	Rinn_00000382	0	+	209921727	209927424	0	6	102,76,155,300,228,991	0,1786,2084,2890,3802,4706
chr1	209921728	209927464	HIT000010086	0	+	209921728	209927464	0	6	101,75,154,299,227,1030	0,1786,2084,2890,3802,4706
chr1	209921728	209927424	ENST00000421933	0	+	209921728	209927424	0	6	101,75,154,299,227,990	0,1786,2084,2890,3802,4706
chr1	209938766	209939527	B_Cells_Pritchard.418031	0	.	209938766	209939527	0	1	761	0
chr1	209939057	209939645	A549_Myers.9586	0	.	209939057	209939645	0	1	588	0
chr1	209970048	209970762	REMC_BreastStem.7675	0	.	209970048	209970762	0	1	714	0
chr1	209974756	209975693	REMC_BreastStem.7677	0	.	209974756	209975693	0	1	937	0
chr1	209974794	209975952	REMC_LuminalBreast.14475	0	.	209974794	209975952	0	1	1158	0
chr1	209975326	209976359	REMC_MyoepithelialBreast.13684	0	.	209975326	209976359	0	1	1033	0
chr1	209976368	209977162	B_Cells_Pritchard.418153	0	.	209976368	209977162	0	1	794	0
chr1	209977039	209977448	A549_Myers.9589	0	.	209977039	209977448	0	1	409	0
chr1	209977203	209977691	B_cells_Cheung.26562	0	.	209977203	209977691	0	1	488	0
chr1	209977319	209978482	B_Cells_Pritchard.418155	0	.	209977319	209978482	0	1	1163	0
chr1	210100162	210100628	B_Cells_Pritchard.418543	0	.	210100162	210100628	0	1	466	0
chr1	210108202	210108782	ZR751_Thompson.3669	0	.	210108202	210108782	0	1	580	0
chr1	210358082	210360734	B_cells_Cheung.26634	0	.	210358082	210360734	0	1	2652	0
chr1	210366238	210366716	B_cells_Cheung.26639	0	.	210366238	210366716	0	1	478	0
chr1	210366238	210366634	melanoma_Garraway_short_term_cultures.9931	0	.	210366238	210366634	0	1	396	0
chr1	210366248	210367854	B_Cells_Pritchard.418863	0	-	210366248	210367854	0	2	422,914	0,692
chr1	210366284	210366668	HeLa_polyA+_Chen.5242	0	.	210366284	210366668	0	1	384	0
chr1	210373223	210373926	HeLa_polyA+_Chen.5247	0	.	210373223	210373926	0	1	703	0
chr1	210374313	210376495	H1_polyA+.15887	0	.	210374313	210376495	0	1	2182	0
chr1	210374646	210376041	B_cells_Cheung.26647	0	.	210374646	210376041	0	1	1395	0
chr1	210377837	210380126	H1_polyA+.15889	0	.	210377837	210380126	0	1	2289	0
chr1	210377842	210380310	B_cells_Cheung.26650	0	.	210377842	210380310	0	1	2468	0
chr1	210377855	210380156	melanoma_Garraway_short_term_cultures.9937	0	.	210377855	210380156	0	1	2301	0
chr1	210378253	210380141	B_Cells_Pritchard.418895	0	.	210378253	210380141	0	1	1888	0
chr1	210380377	210383788	H1_polyA+.15890	0	.	210380377	210383788	0	1	3411	0
chr1	210382792	210383680	B_cells_Cheung.26654	0	.	210382792	210383680	0	1	888	0
chr1	210391980	210393134	melanoma_Garraway_short_term_cultures.9943	0	.	210391980	210393134	0	1	1154	0
chr1	210392094	210394344	H1_polyA+.15896	0	.	210392094	210394344	0	1	2250	0
chr1	210392164	210393754	B_cells_Cheung.26665	0	.	210392164	210393754	0	1	1590	0
chr1	210392794	210393990	B_Cells_Pritchard.418937	0	.	210392794	210393990	0	1	1196	0
chr1	210393225	210394111	MIP101.9327	0	.	210393225	210394111	0	1	886	0
chr1	210393272	210394336	melanoma_Garraway_short_term_cultures.9944	0	.	210393272	210394336	0	1	1064	0
chr1	210394511	210395429	B_Cells_Pritchard.418941	0	.	210394511	210395429	0	1	918	0
chr1	210396563	210398422	H1_polyA+.15898	0	.	210396563	210398422	0	1	1859	0
chr1	210396749	210397976	melanoma_Garraway_short_term_cultures.9945	0	.	210396749	210397976	0	1	1227	0
chr1	210397178	210397948	B_Cells_Pritchard.418949	0	.	210397178	210397948	0	1	770	0
chr1	210398647	210399810	B_cells_Cheung.26671	0	.	210398647	210399810	0	1	1163	0
chr1	210398738	210399787	H1_polyA+.15899	0	.	210398738	210399787	0	1	1049	0
chr1	210398795	210399753	B_Cells_Pritchard.418957	0	.	210398795	210399753	0	1	958	0
chr1	210398817	210399765	melanoma_Garraway_short_term_cultures.9946	0	.	210398817	210399765	0	1	948	0
chr1	210399054	210399443	A549_Myers.9619	0	.	210399054	210399443	0	1	389	0
chr1	210400885	210402879	melanoma_Garraway_short_term_cultures.9947	0	.	210400885	210402879	0	1	1994	0
chr1	210400918	210403023	H1_polyA+.15900	0	.	210400918	210403023	0	1	2105	0
chr1	210406073	210407633	B_Cells_Pritchard.418981	0	.	210406073	210407633	0	1	1560	0
chr1	210406111	210407650	B_cells_Cheung.26677	0	.	210406111	210407650	0	1	1539	0
chr1	210406366	210407588	H1_polyA+.15903	0	.	210406366	210407588	0	1	1222	0
chr1	210423922	210424527	B_cells_Cheung.26692	0	.	210423922	210424527	0	1	605	0
chr1	210424037	210424418	melanoma_Garraway_short_term_cultures.9952	0	.	210424037	210424418	0	1	381	0
chr1	210426129	210427105	B_cells_Cheung.26695	0	.	210426129	210427105	0	1	976	0
chr1	210427444	210428204	B_cells_Cheung.26696	0	.	210427444	210428204	0	1	760	0
chr1	210427588	210430455	H1_polyA+.15913	0	.	210427588	210430455	0	1	2867	0
chr1	210427766	210428437	B_Cells_Pritchard.419031	0	+	210427766	210428437	0	1	671	0
chr1	210428271	210428611	B_cells_Cheung.26697	0	.	210428271	210428611	0	1	340	0
chr1	210430006	210430444	B_cells_Cheung.26700	0	.	210430006	210430444	0	1	438	0
chr1	210437090	210437397	B_cells_Cheung.26704	0	.	210437090	210437397	0	1	307	0
chr1	210496448	210497033	B_Cells_Pritchard.419241	0	.	210496448	210497033	0	1	585	0
chr1	210512832	210513265	B_cells_Cheung.26715	0	.	210512832	210513265	0	1	433	0
chr1	210513586	210514024	B_cells_Cheung.26716	0	.	210513586	210514024	0	1	438	0
chr1	210657242	210657633	B_Cells_Pritchard.419613	0	.	210657242	210657633	0	1	391	0
chr1	210657242	210657638	B_cells_Cheung.26752	0	.	210657242	210657638	0	1	396	0
chr1	210668730	210669278	MeI_Garraway.2728	0	.	210668730	210669278	0	1	548	0
chr1	210697557	210754597	pHIT000003374	0	-	210697557	210754597	0	7	183,99,167,68,129,62,84	0,6184,10074,24890,27791,28801,56956
chr1	210701887	210703633	REMC_LuminalBreast.14554	0	.	210701887	210703633	0	1	1746	0
chr1	210701935	210707205	MDAMB468_Thompson.3832	0	-	210701935	210707205	0	2	696,558	0,4712
chr1	210701936	210702625	ZR751_Thompson.3682	0	.	210701936	210702625	0	1	689	0
chr1	210701937	210702638	BT20_Thompson.3309	0	.	210701937	210702638	0	1	701	0
chr1	210701937	210707991	T47D_Burge_Thompson.4100	0	-	210701937	210707991	0	4	694,303,65,360	0,3691,5039,5694
chr1	210705429	210716564	REMC_LuminalBreast.14555	0	-	210705429	210716564	0	2	2369,3285	0,7850
chr1	210706779	210707708	Rinn_00000727	0	-	210706779	210707708	0	2	283,78	0,851
chr1	210707012	210708433	REMC_BreastStem.7724	0	.	210707012	210708433	0	1	1421	0
chr1	210707621	210794418	MDAMB468_Thompson.3835	0	+	210707621	210794418	0	3	705,72,42	0,78037,86755
chr1	210716665	210718220	REMC_LuminalBreast.14558	0	.	210716665	210718220	0	1	1555	0
chr1	210725871	210727233	REMC_LuminalBreast.14560	0	.	210725871	210727233	0	1	1362	0
chr1	210727384	210727697	REMC_MyoepithelialBreast.13784	0	.	210727384	210727697	0	1	313	0
chr1	210746295	210754780	Rinn_00001807	0	-	210746295	210754780	0	2	160,293	0,8192
chr1	210796581	210802303	REMC_LuminalBreast.14564	0	+	210796581	210802303	0	3	30,2363,1584	0,1061,4138
chr1	210797796	210798882	BT474_Burge_Thompson.4619	0	.	210797796	210798882	0	1	1086	0
chr1	210797798	210799340	BT20_Thompson.3314	0	.	210797798	210799340	0	1	1542	0
chr1	210797802	210799176	T47D_Burge_Thompson.4103	0	.	210797802	210799176	0	1	1374	0
chr1	210797802	210798980	MCF7_Burge_Thompson.4532	0	.	210797802	210798980	0	1	1178	0
chr1	210797802	210798645	melanoma_Garraway_short_term_cultures.9974	0	.	210797802	210798645	0	1	843	0
chr1	210797803	210798821	MDAMB468_Thompson.3838	0	.	210797803	210798821	0	1	1018	0
chr1	210797807	210798945	K562.6955	0	.	210797807	210798945	0	1	1138	0
chr1	210797807	210799028	brain_AmbionMAQC.6470	0	.	210797807	210799028	0	1	1221	0
chr1	210797808	210798645	liver_polyA+.19336	0	.	210797808	210798645	0	1	837	0
chr1	210797812	210798326	testes_Burge.7914	0	.	210797812	210798326	0	1	514	0
chr1	210797813	210798903	CD4_Plagnol_resting.9581	0	.	210797813	210798903	0	1	1090	0
chr1	210797817	210800788	Rinn_00001266	0	+	210797817	210800788	0	3	917,884,70	0,1302,2901
chr1	210797829	210798883	HepG2_Caltech_ENCODE.5229	0	.	210797829	210798883	0	1	1054	0
chr1	210798190	210798696	CD4_Plagnol_activated.9854	0	.	210798190	210798696	0	1	506	0
chr1	210798468	210798878	adipose_Burge.5737	0	.	210798468	210798878	0	1	410	0
chr1	210798513	210798832	breast_Burge.5974	0	.	210798513	210798832	0	1	319	0
chr1	210867190	210878512	Rinn_00001808	0	-	210867190	210878512	0	2	5338,1446	0,9876
chr1	210869742	210871713	prostate_carcinoma.13329	0	.	210869742	210871713	0	1	1971	0
chr1	210869915	210871714	H1_polyA+.15957	0	.	210869915	210871714	0	1	1799	0
chr1	210871401	210877821	Rinn_00001811	0	-	210871401	210877821	0	3	27,193,755	0,934,5665
chr1	210875421	210877820	Rinn_00002581	0	-	210875421	210877820	0	2	1210,754	0,1645
chr1	210876225	210882804	REMC_LuminalBreast.18179	0	.	210876225	210882804	0	1	6579	0
chr1	210876820	210877505	prostate_normal.8275	0	.	210876820	210877505	0	1	685	0
chr1	210886563	210886870	A549_Myers.9664	0	.	210886563	210886870	0	1	307	0
chr1	210890134	210898004	REMC_MyoepithelialBreast.13796	0	.	210890134	210898004	0	1	7870	0
chr1	210891300	210893557	B_Cells_Pritchard.420557	0	.	210891300	210893557	0	1	2257	0
chr1	210892473	210893221	B_cells_Cheung.26847	0	.	210892473	210893221	0	1	748	0
chr1	210893668	210896128	REMC_BreastStem.7729	0	.	210893668	210896128	0	1	2460	0
chr1	210893752	210894337	B_Cells_Pritchard.420559	0	.	210893752	210894337	0	1	585	0
chr1	210893963	210905399	ENST00000446962	0	-	210893963	210905399	0	3	273,101,99	0,10588,11337
chr1	210898111	210898759	REMC_MyoepithelialBreast.13797	0	.	210898111	210898759	0	1	648	0
chr1	210899746	210900302	REMC_MyoepithelialBreast.13798	0	.	210899746	210900302	0	1	556	0
chr1	210899795	210900293	REMC_BreastStem.7730	0	.	210899795	210900293	0	1	498	0
chr1	210904542	210905604	B_Cells_Pritchard.420587	0	-	210904542	210905604	0	2	110,315	0,747
chr1	210904573	210905634	H1_polyA+.15959	0	-	210904573	210905634	0	2	79,351	0,710
chr1	210905264	210905716	A549_Myers.9665	0	.	210905264	210905716	0	1	452	0
chr1	210916956	210917734	REMC_MyoepithelialBreast.13804	0	.	210916956	210917734	0	1	778	0
chr1	210917142	210917955	REMC_LuminalBreast.14571	0	.	210917142	210917955	0	1	813	0
chr1	210919076	210921380	REMC_MyoepithelialBreast.13806	0	.	210919076	210921380	0	1	2304	0
chr1	210923190	210925005	REMC_LuminalBreast.14573	0	.	210923190	210925005	0	1	1815	0
chr1	210942043	210942534	B_Cells_Pritchard.420657	0	.	210942043	210942534	0	1	491	0
chr1	210948532	210949516	B_Cells_Pritchard.420677	0	.	210948532	210949516	0	1	984	0
chr1	210949869	210950267	B_cells_Cheung.26861	0	.	210949869	210950267	0	1	398	0
chr1	210953982	210954370	B_cells_Cheung.26866	0	.	210953982	210954370	0	1	388	0
chr1	210954187	210955424	B_Cells_Pritchard.420695	0	.	210954187	210955424	0	1	1237	0
chr1	210959069	210960246	H1_polyA+.15963	0	.	210959069	210960246	0	1	1177	0
chr1	210960911	210962967	ZR751_Thompson.3690	0	.	210960911	210962967	0	1	2056	0
chr1	210960925	210962446	MIP101.9364	0	.	210960925	210962446	0	1	1521	0
chr1	210961033	210964208	B_cells_Cheung.26874	0	.	210961033	210964208	0	1	3175	0
chr1	210961040	210962986	HeLa_polyA+_Chen.5266	0	.	210961040	210962986	0	1	1946	0
chr1	210961045	210963064	melanoma_Garraway_short_term_cultures.9983	0	.	210961045	210963064	0	1	2019	0
chr1	210961045	210963164	REMC_MyoepithelialBreast.13811	0	.	210961045	210963164	0	1	2119	0
chr1	210961053	210964065	HepG2_Caltech_ENCODE.5235	0	.	210961053	210964065	0	1	3012	0
chr1	210961104	210962962	prostate_carcinoma.13341	0	.	210961104	210962962	0	1	1858	0
chr1	210961110	210962442	prostate_normal.8283	0	.	210961110	210962442	0	1	1332	0
chr1	210961147	210963086	K562.6962	0	.	210961147	210963086	0	1	1939	0
chr1	210961159	210962482	brain_AmbionMAQC.6481	0	.	210961159	210962482	0	1	1323	0
chr1	210961468	210962304	H9_polyA+.6702	0	.	210961468	210962304	0	1	836	0
chr1	211061899	211063304	B_cells_Cheung.26884	0	.	211061899	211063304	0	1	1405	0
chr1	211065537	211065895	B_cells_Cheung.26886	0	.	211065537	211065895	0	1	358	0
chr1	211096781	211097127	brain_AmbionMAQC.6492	0	.	211096781	211097127	0	1	346	0
chr1	211096791	211097120	testes_Burge.7936	0	.	211096791	211097120	0	1	329	0
chr1	211096801	211097120	lymph_node_Burge.7594	0	.	211096801	211097120	0	1	319	0
chr1	211154621	211157464	H9_polyA+.6775	0	.	211154621	211157464	0	1	2843	0
chr1	211155745	211156062	A549_Myers.9698	0	.	211155745	211156062	0	1	317	0
chr1	211155816	211187011	pHIT000003382	0	+	211155816	211187011	0	3	247,51,23	0,2484,31172
chr1	211159513	211160336	H9_polyA+.6720	0	.	211159513	211160336	0	1	823	0
chr1	211517918	211522491	REMC_LuminalBreast.14607	0	.	211517918	211522491	0	1	4573	0
chr1	211519743	211522362	H1_polyA+.16063	0	.	211519743	211522362	0	1	2619	0
chr1	211529871	211530492	B_cells_Cheung.26997	0	.	211529871	211530492	0	1	621	0
chr1	211529997	211531704	REMC_BreastStem.7757	0	.	211529997	211531704	0	1	1707	0
chr1	211530119	211531780	melanoma_Garraway_short_term_cultures.10023	0	.	211530119	211531780	0	1	1661	0
chr1	211530346	211531502	REMC_LuminalBreast.14612	0	.	211530346	211531502	0	1	1156	0
chr1	211530665	211531233	B_Cells_Pritchard.422033	0	.	211530665	211531233	0	1	568	0
chr1	211530702	211531847	REMC_MyoepithelialBreast.13851	0	.	211530702	211531847	0	1	1145	0
chr1	211533918	211538554	REMC_LuminalBreast.14614	0	.	211533918	211538554	0	1	4636	0
chr1	211534933	211539141	REMC_MyoepithelialBreast.13854	0	.	211534933	211539141	0	1	4208	0
chr1	211535706	211536788	REMC_BreastStem.7759	0	.	211535706	211536788	0	1	1082	0
chr1	211985264	211985734	B_Cells_Pritchard.423191	0	.	211985264	211985734	0	1	470	0
chr1	212056334	212056755	brain_AmbionMAQC.6512	0	.	212056334	212056755	0	1	421	0
chr1	212059781	212062377	brain_AmbionMAQC.6514	0	.	212059781	212062377	0	1	2596	0
chr1	212061488	212062396	MIP101.9412	0	.	212061488	212062396	0	1	908	0
chr1	212081292	212082688	liver_polyA+.19491	0	.	212081292	212082688	0	1	1396	0
chr1	212096328	212096935	liver_polyA+.19486	0	.	212096328	212096935	0	1	607	0
chr1	212135302	212135871	liver_polyA+.19495	0	.	212135302	212135871	0	1	569	0
chr1	212155515	212156040	liver_polyA+.19498	0	.	212155515	212156040	0	1	525	0
chr1	212179591	212180327	liver_polyA+.19518	0	.	212179591	212180327	0	1	736	0
chr1	212179628	212180047	kidney_Gilad.12968	0	.	212179628	212180047	0	1	419	0
chr1	212185463	212186116	liver_polyA+.19522	0	.	212185463	212186116	0	1	653	0
chr1	212199969	212201854	liver_polyA+.19543	0	.	212199969	212201854	0	1	1885	0
chr1	212201381	212201854	kidney_Gilad.12974	0	.	212201381	212201854	0	1	473	0
chr1	212222696	212223000	A549_Myers.9723	0	.	212222696	212223000	0	1	304	0
chr1	212440235	212449415	pHIT000098962	0	+	212440235	212449415	0	2	79,536	0,8644
chr1	212465454	212487429	pHIT000098963	0	+	212465454	212487429	0	4	75,116,127,132	0,4965,16039,21843
chr1	212512749	212513442	melanoma_Garraway_short_term_cultures.10030	0	.	212512749	212513442	0	1	693	0
chr1	212512860	212513424	prostate_carcinoma.13431	0	.	212512860	212513424	0	1	564	0
chr1	212513042	212513426	B_Cells_Pritchard.424447	0	.	212513042	212513426	0	1	384	0
chr1	212517051	212519363	H1_polyA+.16069	0	.	212517051	212519363	0	1	2312	0
chr1	212518534	212518866	A549_Myers.9729	0	.	212518534	212518866	0	1	332	0
chr1	212518557	212519370	CD4_Plagnol_resting.9655	0	.	212518557	212519370	0	1	813	0
chr1	212579898	212582900	melanoma_Garraway_short_term_cultures.10036	0	.	212579898	212582900	0	1	3002	0
chr1	212581144	212582626	HepG2_Caltech_ENCODE.5354	0	.	212581144	212582626	0	1	1482	0
chr1	212906100	212908262	H9_polyA+.6779	0	.	212906100	212908262	0	1	2162	0
chr1	212906327	212908296	BT474_Burge_Thompson.4656	0	.	212906327	212908296	0	1	1969	0
chr1	212907098	212908278	MDAMB468_Thompson.3872	0	.	212907098	212908278	0	1	1180	0
chr1	212907395	212908130	HeLa_polyA+_Chen.5307	0	.	212907395	212908130	0	1	735	0
chr1	213063614	213064054	K562.7029	0	.	213063614	213064054	0	1	440	0
chr1	213157135	213157489	A549_Myers.9755	0	.	213157135	213157489	0	1	354	0
chr1	213696990	213697915	T47D_Burge_Thompson.4159	0	.	213696990	213697915	0	1	925	0
chr1	215565752	215572038	pHIT000098975	0	+	215565752	215572038	0	2	126,408	0,5878
chr1	215641924	215643591	pHIT000098976	0	-	215641924	215643591	0	2	471,93	0,1574
chr1	216404373	216405027	A549_Myers.9784	0	.	216404373	216405027	0	1	654	0
chr1	216579816	216580700	B_Cells_Pritchard.432501	0	.	216579816	216580700	0	1	884	0
chr1	216717657	216720265	REMC_MyoepithelialBreast.13939	0	.	216717657	216720265	0	1	2608	0
chr1	216731488	216733082	REMC_MyoepithelialBreast.13943	0	.	216731488	216733082	0	1	1594	0
chr1	216737918	216740349	REMC_MyoepithelialBreast.13944	0	.	216737918	216740349	0	1	2431	0
chr1	217222395	217224291	B_Cells_Pritchard.433929	0	.	217222395	217224291	0	1	1896	0
chr1	217222569	217222949	A549_Myers.9805	0	.	217222569	217222949	0	1	380	0
chr1	217223637	217224244	B_cells_Cheung.27149	0	.	217223637	217224244	0	1	607	0
chr1	217229266	217230558	B_cells_Cheung.27156	0	.	217229266	217230558	0	1	1292	0
chr1	217229325	217230765	B_Cells_Pritchard.433953	0	.	217229325	217230765	0	1	1440	0
chr1	217230065	217230375	A549_Myers.9806	0	.	217230065	217230375	0	1	310	0
chr1	217287829	217289379	B_Cells_Pritchard.434161	0	.	217287829	217289379	0	1	1550	0
chr1	217287973	217289192	B_cells_Cheung.27163	0	.	217287973	217289192	0	1	1219	0
chr1	217321325	217323145	B_cells_Cheung.27246	0	.	217321325	217323145	0	1	1820	0
chr1	217321326	217323897	B_Cells_Pritchard.434275	0	.	217321326	217323897	0	1	2571	0
chr1	217321680	217322262	prostate_normal.8409	0	.	217321680	217322262	0	1	582	0
chr1	217339595	217340268	B_cells_Cheung.27250	0	.	217339595	217340268	0	1	673	0
chr1	217363715	217364199	B_cells_Cheung.27256	0	.	217363715	217364199	0	1	484	0
chr1	217389687	217396162	B_Cells_Pritchard.434497	0	-	217389687	217396162	0	2	340,78	0,6397
chr1	217458479	217536557	REMC_LuminalBreast.14849	0	+	217458479	217536557	0	4	198,275,286,2216	0,22684,75546,75862
chr1	217458512	217468679	MIP101.9539	0	.	217458512	217468679	0	1	10167	0
chr1	217459865	217460407	B_Cells_Pritchard.434603	0	+	217459865	217460407	0	1	542	0
chr1	217481160	217483166	prostate_carcinoma.13611	0	.	217481160	217483166	0	1	2006	0
chr1	217481382	217482639	B_cells_Cheung.27288	0	.	217481382	217482639	0	1	1257	0
chr1	217482731	217487083	B_cells_Cheung.27264	0	.	217482731	217487083	0	1	4352	0
chr1	217482857	217485662	H1_polyA+.16207	0	.	217482857	217485662	0	1	2805	0
chr1	217484455	217485637	MIP101.9546	0	.	217484455	217485637	0	1	1182	0
chr1	217484884	217485559	prostate_carcinoma.13613	0	.	217484884	217485559	0	1	675	0
chr1	217487995	217491461	H1_polyA+.16210	0	.	217487995	217491461	0	1	3466	0
chr1	217492644	217493014	B_Cells_Pritchard.434715	0	.	217492644	217493014	0	1	370	0
chr1	217497740	217498502	B_cells_Cheung.27296	0	.	217497740	217498502	0	1	762	0
chr1	217502398	217504206	B_cells_Cheung.27301	0	.	217502398	217504206	0	1	1808	0
chr1	217502451	217504230	B_Cells_Pritchard.434759	0	.	217502451	217504230	0	1	1779	0
chr1	217518907	217519673	B_cells_Cheung.27312	0	.	217518907	217519673	0	1	766	0
chr1	217533906	217535945	MIP101.9558	0	.	217533906	217535945	0	1	2039	0
chr1	217548286	217549514	REMC_LuminalBreast.14856	0	.	217548286	217549514	0	1	1228	0
chr1	217548350	217549298	B_cells_Cheung.27340	0	.	217548350	217549298	0	1	948	0
chr1	217548543	217549633	HepG2_Caltech_ENCODE.5345	0	.	217548543	217549633	0	1	1090	0
chr1	217548573	217549293	H1_polyA+.16220	0	.	217548573	217549293	0	1	720	0
chr1	217549105	217549640	melanoma_Garraway_short_term_cultures.10133	0	.	217549105	217549640	0	1	535	0
chr1	217549377	217549686	B_cells_Cheung.27341	0	.	217549377	217549686	0	1	309	0
chr1	217566672	217567502	B_cells_Cheung.27360	0	.	217566672	217567502	0	1	830	0
chr1	217566773	217568048	B_Cells_Pritchard.434979	0	.	217566773	217568048	0	1	1275	0
chr1	217566919	217567917	REMC_BreastStem.7787	0	.	217566919	217567917	0	1	998	0
chr1	217566984	217567535	prostate_carcinoma.13625	0	.	217566984	217567535	0	1	551	0
chr1	217567018	217567690	MIP101.9564	0	.	217567018	217567690	0	1	672	0
chr1	217651588	217699447	REMC_BreastStem.7817	0	-	217651588	217699447	0	9	316,52,131,2511,118,1646,204,237,625	0,15646,17421,21279,25432,31769,37406,38457,47234
chr1	217671652	217675429	REMC_MyoepithelialBreast.13956	0	.	217671652	217675429	0	1	3777	0
chr1	217672012	217675540	MIP101.9570	0	.	217672012	217675540	0	1	3528	0
chr1	217672040	217673297	HepG2_Caltech_ENCODE.5356	0	.	217672040	217673297	0	1	1257	0
chr1	217672781	217673492	B_Cells_Pritchard.435351	0	.	217672781	217673492	0	1	711	0
chr1	217672798	217674025	B_cells_Cheung.27387	0	.	217672798	217674025	0	1	1227	0
chr1	217678085	217679918	prostate_carcinoma.13644	0	.	217678085	217679918	0	1	1833	0
chr1	217678206	217680532	B_cells_Cheung.27392	0	.	217678206	217680532	0	2	1514,292	0,2034
chr1	217678253	217679899	REMC_LuminalBreast.14862	0	.	217678253	217679899	0	1	1646	0
chr1	217678323	217679262	HepG2_Caltech_ENCODE.5360	0	.	217678323	217679262	0	1	939	0
chr1	217678473	217679895	MIP101.9572	0	.	217678473	217679895	0	1	1422	0
chr1	217678581	217679770	REMC_BreastStem.7819	0	.	217678581	217679770	0	1	1189	0
chr1	217678924	217679710	prostate_normal.8425	0	.	217678924	217679710	0	1	786	0
chr1	217685751	217687828	B_cells_Cheung.27396	0	.	217685751	217687828	0	1	2077	0
chr1	217894101	217895769	MIP101.9591	0	.	217894101	217895769	0	1	1668	0
chr1	217900696	217902287	MIP101.9594	0	.	217900696	217902287	0	1	1591	0
chr1	218539808	218540491	REMC_MyoepithelialBreast.13974	0	.	218539808	218540491	0	1	683	0
chr1	218905492	218906722	REMC_BreastStem.7849	0	.	218905492	218906722	0	1	1230	0
chr1	218905883	218906903	REMC_LuminalBreast.14959	0	.	218905883	218906903	0	1	1020	0
chr1	218908103	218909641	REMC_BreastStem.7850	0	.	218908103	218909641	0	1	1538	0
chr1	218962090	218964889	B_Cells_Pritchard.438309	0	-	218962090	218964889	0	2	2108,327	0,2472
chr1	218963012	218963708	B_cells_Cheung.27492	0	.	218963012	218963708	0	1	696	0
chr1	218969784	218971562	B_Cells_Pritchard.438323	0	.	218969784	218971562	0	1	1778	0
chr1	219055640	219056554	HeLa_polyA-_Chen.2934	0	.	219055640	219056554	0	1	914	0
chr1	219055701	219056392	breast_Burge.6084	0	.	219055701	219056392	0	1	691	0
chr1	219055704	219056242	A549_Myers.9872	0	.	219055704	219056242	0	1	538	0
chr1	219055769	219056301	BT474_Burge_Thompson.4700	0	.	219055769	219056301	0	1	532	0
chr1	219055789	219056392	brain_AmbionMAQC.6602	0	.	219055789	219056392	0	1	603	0
chr1	219055840	219059260	liver_polyA+.19858	0	-	219055840	219059260	0	2	1230,1106	0,2314
chr1	219063975	219064935	prostate_normal.8514	0	.	219063975	219064935	0	1	960	0
chr1	219064068	219064555	B_Cells_Pritchard.438419	0	.	219064068	219064555	0	1	487	0
chr1	219064149	219064629	liver_polyA+.19860	0	.	219064149	219064629	0	1	480	0
chr1	219068645	219069403	MeI_Garraway.2788	0	.	219068645	219069403	0	1	758	0
chr1	219068656	219069691	prostate_carcinoma.13848	0	.	219068656	219069691	0	1	1035	0
chr1	219068716	219069259	MCF10A_Thompson.3444	0	.	219068716	219069259	0	1	543	0
chr1	219068740	219069542	prostate_normal.8466	0	.	219068740	219069542	0	1	802	0
chr1	219068861	219069497	melanoma_Garraway_short_term_cultures.10178	0	.	219068861	219069497	0	1	636	0
chr1	219108595	219109956	H1_polyA+.16314	0	.	219108595	219109956	0	1	1361	0
chr1	219109102	219110039	prostate_carcinoma.13726	0	.	219109102	219110039	0	1	937	0
chr1	219116069	219116948	MIP101.9766	0	.	219116069	219116948	0	1	879	0
chr1	219116994	219117376	adipose_Burge.5846	0	.	219116994	219117376	0	1	382	0
chr1	219135539	219135866	pHIT000098995	0	-	219135539	219135866	0	1	327	0
chr1	219135539	219167104	pHIT000071085	0	-	219135539	219167104	0	3	327,79,8	0,20573,31557
chr1	219321473	219346115	B_cells_Cheung.27549	0	+	219321473	219346115	0	5	505,1467,107,152,206	0,21803,23524,24082,24436
chr1	219523146	219525149	HIT000092134	0	-	219523146	219525149	0	1	2003	0
chr1	219569892	219576261	HIT000048361	0	-	219569892	219576261	0	2	4058,438	0,5931
chr1	219569892	219576261	NR_024236	0	-	219569892	219576261	0	2	4058,434	0,5935
chr1	219570044	219576261	ENST00000439004	0	-	219570044	219576261	0	2	3906,434	0,5783
chr1	219572399	219576094	HIT000501665	0	-	219572399	219576094	0	2	1551,271	0,3424
chr1	219795555	219803601	Rinn_00001829	0	-	219795555	219803601	0	3	838,73,330	0,5474,7716
chr1	219896233	219897092	REMC_LuminalBreast.14975	0	.	219896233	219897092	0	1	859	0
chr1	219909866	219911751	REMC_MyoepithelialBreast.14020	0	.	219909866	219911751	0	1	1885	0
chr1	219914088	219915424	REMC_MyoepithelialBreast.14021	0	.	219914088	219915424	0	1	1336	0
chr1	219934618	219936932	REMC_MyoepithelialBreast.14024	0	.	219934618	219936932	0	1	2314	0
chr1	219937747	219940091	REMC_MyoepithelialBreast.14026	0	.	219937747	219940091	0	1	2344	0
chr1	219991157	219991874	B_Cells_Pritchard.440501	0	.	219991157	219991874	0	1	717	0
chr1	220004802	220005169	B_Cells_Pritchard.440559	0	.	220004802	220005169	0	1	367	0
chr1	220013648	220014664	B_Cells_Pritchard.440599	0	.	220013648	220014664	0	1	1016	0
chr1	220017132	220017986	B_Cells_Pritchard.440615	0	.	220017132	220017986	0	1	854	0
chr1	220017376	220017987	B_cells_Cheung.27586	0	.	220017376	220017987	0	1	611	0
chr1	220051832	220052707	melanoma_Garraway_short_term_cultures.10190	0	.	220051832	220052707	0	1	875	0
chr1	220052165	220052659	B_cells_Cheung.27589	0	.	220052165	220052659	0	1	494	0
chr1	220063294	220066204	B_Cells_Pritchard.440745	0	.	220063294	220066204	0	1	2910	0
chr1	220063482	220066209	B_cells_Cheung.27590	0	.	220063482	220066209	0	1	2727	0
chr1	220066484	220067292	B_Cells_Pritchard.440747	0	.	220066484	220067292	0	1	808	0
chr1	220155163	220155893	B_Cells_Pritchard.440985	0	.	220155163	220155893	0	1	730	0
chr1	220155369	220156909	REMC_LuminalBreast.15014	0	.	220155369	220156909	0	1	1540	0
chr1	220158630	220159342	B_Cells_Pritchard.441001	0	.	220158630	220159342	0	1	712	0
chr1	220209100	220209439	H1_polyA+.16321	0	.	220209100	220209439	0	1	339	0
chr1	220218766	220245460	MIP101.9774	0	+	220218766	220245460	0	5	33,1567,3000,298,6	0,1542,3456,6468,26688
chr1	220243839	220245624	melanoma_Garraway_short_term_cultures.10199	0	.	220243839	220245624	0	1	1785	0
chr1	220245738	220248810	melanoma_Garraway_short_term_cultures.10200	0	.	220245738	220248810	0	1	3072	0
chr1	220258159	220261783	melanoma_Garraway_short_term_cultures.10205	0	.	220258159	220261783	0	1	3624	0
chr1	220272462	220273040	MeI_Garraway.2792	0	.	220272462	220273040	0	1	578	0
chr1	220273999	220281386	melanoma_Garraway_short_term_cultures.10214	0	.	220273999	220281386	0	1	7387	0
chr1	220283527	220289914	A549_Myers.9886	0	-	220283527	220289914	0	2	279,240	0,6147
chr1	220286581	220289552	melanoma_Garraway_short_term_cultures.10216	0	.	220286581	220289552	0	1	2971	0
chr1	220291715	220296253	melanoma_Garraway_short_term_cultures.10219	0	.	220291715	220296253	0	1	4538	0
chr1	220346054	220349075	melanoma_Garraway_short_term_cultures.10226	0	.	220346054	220349075	0	1	3021	0
chr1	220351318	220353898	melanoma_Garraway_short_term_cultures.10228	0	.	220351318	220353898	0	1	2580	0
chr1	220410253	220410856	melanoma_Garraway_short_term_cultures.10240	0	.	220410253	220410856	0	1	603	0
chr1	220438227	220443825	pHIT000099001	0	+	220438227	220443825	0	2	167,161	0,5437
chr1	220520168	220522515	HIT000046111	0	-	220520168	220522515	0	1	2347	0
chr1	220711884	220714992	XR_078242	0	-	220711884	220714992	0	3	599,854,123	0,1363,2985
chr1	220711884	220714992	XR_079375	0	-	220711884	220714992	0	4	414,496,1001,123	0,415,1216,2985
chr1	220711884	220715290	XR_078883	0	-	220711884	220715290	0	5	414,496,1001,120,63	0,415,1216,2985,3343
chr1	220712220	220712900	REMC_LuminalBreast.15015	0	.	220712220	220712900	0	1	680	0
chr1	220712917	220713335	REMC_MyoepithelialBreast.14031	0	.	220712917	220713335	0	1	418	0
chr1	220713574	220717001	ENST00000508034	0	+	220713574	220717001	0	2	380,1247	0,2180
chr1	220713733	220714171	REMC_LuminalBreast.15016	0	.	220713733	220714171	0	1	438	0
chr1	220713778	220714328	REMC_MyoepithelialBreast.14032	0	.	220713778	220714328	0	1	550	0
chr1	220994930	220996041	H1_polyA+.16361	0	.	220994930	220996041	0	1	1111	0
chr1	220995115	220995946	REMC_MyoepithelialBreast.14084	0	.	220995115	220995946	0	1	831	0
chr1	220995313	220995962	lymph_node_Burge.7744	0	.	220995313	220995962	0	1	649	0
chr1	221252793	221275600	H1_polyA+.16759	0	-	221252793	221275600	0	4	4834,2730,259,99	0,9067,16725,22708
chr1	221252960	221264704	H9_polyA+.6962	0	.	221252960	221264704	0	1	11744	0
chr1	221252960	221267609	H9_polyA+.6964	0	+	221252960	221267609	0	2	11713,108	0,14541
chr1	221256821	221257582	H1_rRNA-depleted_UCSD_REMC.13392	0	.	221256821	221257582	0	1	761	0
chr1	221256849	221257760	H9_polyA-_Chen.2237	0	.	221256849	221257760	0	1	911	0
chr1	221257656	221280734	H1_polyA+.16757	0	+	221257656	221280734	0	4	5179,411,109,208	0,7706,11915,22870
chr1	221260383	221261163	H9_polyA-_Chen.2239	0	.	221260383	221261163	0	1	780	0
chr1	221260985	221261532	NEC_from_H9.11433	0	.	221260985	221261532	0	1	547	0
chr1	221261811	221262234	NEC_from_H9.11434	0	.	221261811	221262234	0	1	423	0
chr1	221261931	221262269	H1_rRNA-depleted_UCSD_REMC.13396	0	.	221261931	221262269	0	1	338	0
chr1	221263403	221263756	NEC_from_H9.11435	0	.	221263403	221263756	0	1	353	0
chr1	221268728	221269160	H1_rRNA-depleted_UCSD_REMC.13400	0	.	221268728	221269160	0	1	432	0
chr1	221268730	221269198	H1_polyA+.16758	0	.	221268730	221269198	0	1	468	0
chr1	221268732	221269198	H9_polyA+.6963	0	.	221268732	221269198	0	1	466	0
chr1	221275799	221280711	H9_polyA+.6892	0	-	221275799	221280711	0	2	823,2742	0,2170
chr1	221275799	221280711	H9_polyA+.6891	0	+	221275799	221280711	0	2	2772,591	0,4321
chr1	221276039	221276493	H1_rRNA-depleted_UCSD_REMC.13403	0	.	221276039	221276493	0	1	454	0
chr1	221277560	221280711	H9_polyA+.6893	0	.	221277560	221280711	0	1	3151	0
chr1	221289306	221289644	H1_rRNA-depleted_UCSD_REMC.13406	0	.	221289306	221289644	0	1	338	0
chr1	221305676	221310645	H1_polyA+.16770	0	.	221305676	221310645	0	1	4969	0
chr1	221305950	221308380	H9_polyA+.6915	0	.	221305950	221308380	0	1	2430	0
chr1	221314805	221315115	H1_polyA+.16773	0	.	221314805	221315115	0	1	310	0
chr1	221316296	221317313	H1_polyA+.16775	0	.	221316296	221317313	0	1	1017	0
chr1	221322107	221323056	H1_polyA+.16779	0	.	221322107	221323056	0	1	949	0
chr1	221322524	221323269	H9_polyA+.6916	0	.	221322524	221323269	0	1	745	0
chr1	221337341	221338768	REMC_LuminalBreast.15106	0	.	221337341	221338768	0	1	1427	0
chr1	221446189	221447589	brain_AmbionMAQC.6642	0	.	221446189	221447589	0	1	1400	0
chr1	221448663	221449266	brain_AmbionMAQC.6645	0	.	221448663	221449266	0	1	603	0
chr1	221451974	221454112	MIP101.9821	0	.	221451974	221454112	0	1	2138	0
chr1	221730144	221730452	A549_Myers.9941	0	.	221730144	221730452	0	1	308	0
chr1	221735229	221735830	ZR751_Thompson.3807	0	.	221735229	221735830	0	1	601	0
chr1	221740896	221741341	ZR751_Thompson.3808	0	.	221740896	221741341	0	1	445	0
chr1	221941150	221941800	ZR751_Thompson.3823	0	.	221941150	221941800	0	1	650	0
chr1	221950813	221951207	B_Cells_Pritchard.445345	0	.	221950813	221951207	0	1	394	0
chr1	222031437	222031915	IMR90_UCSD_REMC.7557	0	+	222031437	222031915	0	1	478	0
chr1	222031541	222032050	prostate_carcinoma.13851	0	.	222031541	222032050	0	1	509	0
chr1	222031594	222031918	A549_Myers.9961	0	.	222031594	222031918	0	1	324	0
chr1	222031633	222032010	spleen_Raymond.29865	0	.	222031633	222032010	0	1	377	0
chr1	222139536	222190070	K562.7219	0	-	222139536	222190070	0	3	752,128,88	0,1362,50446
chr1	222204896	222206649	XR_078244	0	-	222204896	222206649	0	4	1207,78,124,282	0,1208,1316,1471
chr1	222205194	222207764	XR_079084	0	-	222205194	222207764	0	1	2570	0
chr1	222205718	222207764	HIT000043319	0	-	222205718	222207764	0	1	2046	0
chr1	222205729	222206405	REMC_LuminalBreast.15132	0	.	222205729	222206405	0	1	676	0
chr1	222205770	222207284	B_Cells_Pritchard.445773	0	-	222205770	222207284	0	7	151,141,125,39,143,125,78	0,265,424,939,997,1218,1436
chr1	222205782	222206918	K562.7235	0	.	222205782	222206918	0	1	1136	0
chr1	222205850	222206368	H1_polyA+.16444	0	.	222205850	222206368	0	1	518	0
chr1	222205949	222206379	REMC_BreastStem.7909	0	.	222205949	222206379	0	1	430	0
chr1	222205994	222206361	HepG2_Caltech_ENCODE.5426	0	.	222205994	222206361	0	1	367	0
chr1	222206009	222206369	B_cells_Cheung.27826	0	.	222206009	222206369	0	1	360	0
chr1	222217929	222226093	Rinn_00001838	0	-	222217929	222226093	0	2	935,196	0,7968
chr1	222246791	222247202	H1_polyA+.16450	0	.	222246791	222247202	0	1	411	0
chr1	222246819	222247178	B_cells_Cheung.27835	0	.	222246819	222247178	0	1	359	0
chr1	222246827	222247182	B_Cells_Pritchard.445815	0	.	222246827	222247182	0	1	355	0
chr1	222247139	222249104	K562.7239	0	.	222247139	222249104	0	1	1965	0
chr1	222265966	222266555	REMC_LuminalBreast.15156	0	.	222265966	222266555	0	1	589	0
chr1	222265972	222266292	HeLa_polyA+_Chen.5418	0	.	222265972	222266292	0	1	320	0
chr1	222265978	222266284	IMR90_UCSD_REMC.7580	0	-	222265978	222266284	0	1	306	0
chr1	222265992	222266528	H1_polyA+.16470	0	.	222265992	222266528	0	1	536	0
chr1	222265993	222266568	B_cells_Cheung.27849	0	.	222265993	222266568	0	1	575	0
chr1	222266323	222269053	REMC_MyoepithelialBreast.14131	0	.	222266323	222269053	0	1	2730	0
chr1	222266440	222268719	prostate_carcinoma.13882	0	-	222266440	222268719	0	2	17,307	0,1972
chr1	222266624	222269438	B_cells_Cheung.27850	0	.	222266624	222269438	0	1	2814	0
chr1	222266633	222267351	K562.7253	0	.	222266633	222267351	0	1	718	0
chr1	222266655	222268775	HeLa_polyA+_Chen.5419	0	.	222266655	222268775	0	1	2120	0
chr1	222266659	222269002	HepG2_Caltech_ENCODE.5441	0	.	222266659	222269002	0	1	2343	0
chr1	222266685	222267865	REMC_LuminalBreast.15157	0	.	222266685	222267865	0	1	1180	0
chr1	222266687	222269361	H1_polyA+.16471	0	.	222266687	222269361	0	1	2674	0
chr1	222266718	222267940	CD4_Plagnol_activated.10077	0	.	222266718	222267940	0	1	1222	0
chr1	222266721	222269218	prostate_carcinoma.13873	0	+	222266721	222269218	0	2	984,45	0,2452
chr1	222266729	222267980	REMC_BreastStem.7910	0	.	222266729	222267980	0	1	1251	0
chr1	222266751	222267289	CD4_Plagnol_resting.9800	0	.	222266751	222267289	0	1	538	0
chr1	222266771	222267297	BT474_Burge_Thompson.4734	0	.	222266771	222267297	0	1	526	0
chr1	222266781	222267644	MCF7_Burge_Thompson.4662	0	.	222266781	222267644	0	1	863	0
chr1	222266802	222268035	brain_AmbionMAQC.6669	0	.	222266802	222268035	0	1	1233	0
chr1	222266851	222267328	melanoma_Garraway_short_term_cultures.10304	0	.	222266851	222267328	0	1	477	0
chr1	222267344	222267930	CD4_Plagnol_resting.9799	0	.	222267344	222267930	0	1	586	0
chr1	222267514	222267822	MIP101.9887	0	.	222267514	222267822	0	1	308	0
chr1	222267528	222268056	melanoma_Garraway_short_term_cultures.10305	0	.	222267528	222268056	0	1	528	0
chr1	222267726	222268368	K562.7254	0	.	222267726	222268368	0	1	642	0
chr1	222268049	222269032	REMC_LuminalBreast.15158	0	.	222268049	222269032	0	1	983	0
chr1	222268099	222269007	REMC_BreastStem.7911	0	.	222268099	222269007	0	1	908	0
chr1	222268111	222268836	CD4_Plagnol_resting.9801	0	.	222268111	222268836	0	1	725	0
chr1	222268112	222268955	brain_AmbionMAQC.6670	0	.	222268112	222268955	0	1	843	0
chr1	222268117	222268967	CD4_Plagnol_activated.10078	0	.	222268117	222268967	0	1	850	0
chr1	222268169	222268821	melanoma_Garraway_short_term_cultures.10306	0	.	222268169	222268821	0	1	652	0
chr1	222268425	222268851	MIP101.9898	0	.	222268425	222268851	0	1	426	0
chr1	222268445	222268802	prostate_normal.8571	0	.	222268445	222268802	0	1	357	0
chr1	222268456	222268847	H9_polyA+.6924	0	.	222268456	222268847	0	1	391	0
chr1	222269086	222269419	brain_AmbionMAQC.6668	0	.	222269086	222269419	0	1	333	0
chr1	222269579	222269915	B_cells_Cheung.27851	0	.	222269579	222269915	0	1	336	0
chr1	222269580	222269902	H1_polyA+.16472	0	.	222269580	222269902	0	1	322	0
chr1	222270036	222270720	H1_polyA+.16473	0	.	222270036	222270720	0	1	684	0
chr1	222270117	222270725	REMC_LuminalBreast.15159	0	.	222270117	222270725	0	1	608	0
chr1	222270119	222270463	HeLa_polyA+_Chen.5420	0	.	222270119	222270463	0	1	344	0
chr1	222270124	222270605	HepG2_Caltech_ENCODE.5442	0	.	222270124	222270605	0	1	481	0
chr1	222270139	222270717	B_cells_Cheung.27852	0	.	222270139	222270717	0	1	578	0
chr1	222270156	222270463	brain_AmbionMAQC.6671	0	.	222270156	222270463	0	1	307	0
chr1	222456629	222459450	REMC_MyoepithelialBreast.14177	0	.	222456629	222459450	0	1	2821	0
chr1	222456716	222458488	REMC_LuminalBreast.15184	0	.	222456716	222458488	0	1	1772	0
chr1	222466540	222467419	REMC_BreastStem.7934	0	.	222466540	222467419	0	1	879	0
chr1	222466618	222468431	REMC_LuminalBreast.15189	0	.	222466618	222468431	0	1	1813	0
chr1	222466629	222467478	H1_polyA+.16505	0	.	222466629	222467478	0	1	849	0
chr1	222466896	222468054	B_Cells_Pritchard.446377	0	+	222466896	222468054	0	1	1158	0
chr1	222467024	222467653	B_cells_Cheung.27931	0	.	222467024	222467653	0	1	629	0
chr1	222467777	222469628	B_cells_Cheung.27932	0	.	222467777	222469628	0	1	1851	0
chr1	222473357	222474240	B_cells_Cheung.27933	0	.	222473357	222474240	0	1	883	0
chr1	222475127	222476791	REMC_LuminalBreast.15193	0	.	222475127	222476791	0	1	1664	0
chr1	222635916	222637261	REMC_LuminalBreast.15220	0	.	222635916	222637261	0	1	1345	0
chr1	222635936	222636808	B_cells_Cheung.27915	0	.	222635936	222636808	0	1	872	0
chr1	222636191	222636831	REMC_MyoepithelialBreast.14140	0	.	222636191	222636831	0	1	640	0
chr1	222636258	222636839	H1_polyA+.16548	0	.	222636258	222636839	0	1	581	0
chr1	223014309	223015880	REMC_MyoepithelialBreast.14168	0	.	223014309	223015880	0	1	1571	0
chr1	223014415	223016192	H1_polyA+.16594	0	.	223014415	223016192	0	1	1777	0
chr1	223023696	223024505	REMC_MyoepithelialBreast.14173	0	.	223023696	223024505	0	1	809	0
chr1	223043223	223043631	B_cells_Cheung.27995	0	.	223043223	223043631	0	1	408	0
chr1	223086965	223093273	H1_polyA+.16601	0	-	223086965	223093273	0	2	895,267	0,6041
chr1	223096431	223097593	H1_polyA+.16607	0	.	223096431	223097593	0	1	1162	0
chr1	223097844	223099013	H1_polyA+.16605	0	.	223097844	223099013	0	1	1169	0
chr1	223097988	223098360	H9_polyA+.6970	0	.	223097988	223098360	0	1	372	0
chr1	223099146	223100106	H1_polyA+.16608	0	.	223099146	223100106	0	1	960	0
chr1	224196850	224198547	REMC_BreastStem.8014	0	.	224196850	224198547	0	1	1697	0
chr1	224204623	224206435	REMC_BreastStem.8017	0	.	224204623	224206435	0	1	1812	0
chr1	224208112	224210953	REMC_BreastStem.8021	0	.	224208112	224210953	0	1	2841	0
chr1	224216580	224217714	REMC_LuminalBreast.15364	0	.	224216580	224217714	0	1	1134	0
chr1	224223065	224223930	REMC_BreastStem.8025	0	.	224223065	224223930	0	1	865	0
chr1	224226276	224227839	REMC_BreastStem.8026	0	.	224226276	224227839	0	1	1563	0
chr1	224255813	224257514	REMC_MyoepithelialBreast.14350	0	.	224255813	224257514	0	1	1701	0
chr1	224294837	224295252	B_cells_Cheung.28153	0	.	224294837	224295252	0	1	415	0
chr1	224294866	224295458	B_Cells_Pritchard.450937	0	.	224294866	224295458	0	1	592	0
chr1	224306379	224308042	H1_polyA+.16798	0	.	224306379	224308042	0	1	1663	0
chr1	224306398	224308037	B_Cells_Pritchard.450971	0	-	224306398	224308037	0	2	1015,547	0,1092
chr1	224308142	224309799	B_Cells_Pritchard.450969	0	.	224308142	224309799	0	1	1657	0
chr1	224308163	224309710	B_cells_Cheung.28163	0	.	224308163	224309710	0	1	1547	0
chr1	224308199	224309611	K562.7357	0	.	224308199	224309611	0	1	1412	0
chr1	224308776	224309704	HepG2_Caltech_ENCODE.5504	0	.	224308776	224309704	0	1	928	0
chr1	224336537	224339856	REMC_MyoepithelialBreast.14358	0	.	224336537	224339856	0	1	3319	0
chr1	224336974	224338382	BT474_Burge_Thompson.4807	0	.	224336974	224338382	0	1	1408	0
chr1	224337061	224338398	A549_Myers.10082	0	.	224337061	224338398	0	1	1337	0
chr1	224337227	224339094	H1_polyA+.16809	0	.	224337227	224339094	0	1	1867	0
chr1	224337634	224338565	CD4_Plagnol_resting.9958	0	.	224337634	224338565	0	1	931	0
chr1	224337691	224339795	REMC_LuminalBreast.15377	0	.	224337691	224339795	0	1	2104	0
chr1	224337693	224338538	brain_AmbionMAQC.6745	0	.	224337693	224338538	0	1	845	0
chr1	224337866	224338561	MCF7_Burge_Thompson.4712	0	.	224337866	224338561	0	1	695	0
chr1	224337883	224338378	ZR751_Thompson.3882	0	.	224337883	224338378	0	1	495	0
chr1	224337887	224338582	melanoma_Garraway_short_term_cultures.10513	0	.	224337887	224338582	0	1	695	0
chr1	224337894	224338371	MDAMB468_Thompson.4010	0	.	224337894	224338371	0	1	477	0
chr1	224337904	224338388	T47D_Burge_Thompson.4288	0	.	224337904	224338388	0	1	484	0
chr1	224337921	224338677	B_cells_Cheung.28184	0	.	224337921	224338677	0	1	756	0
chr1	224337922	224338575	H9_polyA+.7038	0	.	224337922	224338575	0	1	653	0
chr1	224337926	224338279	MDAMB231_Thompson.3571	0	.	224337926	224338279	0	1	353	0
chr1	224337937	224338354	HepG2_Caltech_ENCODE.5518	0	.	224337937	224338354	0	1	417	0
chr1	224337951	224338271	HeLa_polyA+_Chen.5512	0	.	224337951	224338271	0	1	320	0
chr1	224339966	224350313	REMC_MyoepithelialBreast.14359	0	.	224339966	224350313	0	1	10347	0
chr1	224340008	224340751	REMC_BreastStem.8047	0	.	224340008	224340751	0	1	743	0
chr1	224344835	224346717	H1_polyA+.16811	0	.	224344835	224346717	0	1	1882	0
chr1	224345196	224346220	ZR751_Thompson.3884	0	.	224345196	224346220	0	1	1024	0
chr1	224345212	224350939	REMC_LuminalBreast.15381	0	.	224345212	224350939	0	1	5727	0
chr1	224345366	224346366	T47D_Burge_Thompson.4291	0	.	224345366	224346366	0	1	1000	0
chr1	224345372	224346692	prostate_carcinoma.14154	0	.	224345372	224346692	0	1	1320	0
chr1	224345375	224346215	prostate_normal.8720	0	.	224345375	224346215	0	1	840	0
chr1	224345415	224346071	MCF7_Burge_Thompson.4715	0	.	224345415	224346071	0	1	656	0
chr1	224345431	224345906	B_cells_Cheung.28192	0	.	224345431	224345906	0	1	475	0
chr1	224351104	224356471	REMC_LuminalBreast.15382	0	.	224351104	224356471	0	1	5367	0
chr1	224351235	224354837	REMC_MyoepithelialBreast.14361	0	.	224351235	224354837	0	1	3602	0
chr1	224354889	224357642	REMC_MyoepithelialBreast.14362	0	.	224354889	224357642	0	1	2753	0
chr1	224357843	224359844	REMC_LuminalBreast.15384	0	.	224357843	224359844	0	1	2001	0
chr1	224358124	224359681	REMC_MyoepithelialBreast.14363	0	.	224358124	224359681	0	1	1557	0
chr1	224358278	224359787	prostate_carcinoma.14165	0	.	224358278	224359787	0	1	1509	0
chr1	224358898	224359662	H1_polyA+.16813	0	.	224358898	224359662	0	1	764	0
chr1	224358958	224359667	brain_AmbionMAQC.6747	0	.	224358958	224359667	0	1	709	0
chr1	224359304	224359668	prostate_normal.8722	0	.	224359304	224359668	0	1	364	0
chr1	224361565	224364238	REMC_LuminalBreast.15385	0	.	224361565	224364238	0	1	2673	0
chr1	224361760	224362298	prostate_carcinoma.14166	0	.	224361760	224362298	0	1	538	0
chr1	224362727	224364239	REMC_MyoepithelialBreast.14365	0	.	224362727	224364239	0	1	1512	0
chr1	224364163	224364766	A549_Myers.10087	0	.	224364163	224364766	0	1	603	0
chr1	224364496	224366080	B_Cells_Pritchard.451021	0	.	224364496	224366080	0	1	1584	0
chr1	224365127	224367667	REMC_LuminalBreast.15386	0	.	224365127	224367667	0	1	2540	0
chr1	224365193	224367515	REMC_MyoepithelialBreast.14366	0	.	224365193	224367515	0	1	2322	0
chr1	224372404	224373682	REMC_MyoepithelialBreast.14367	0	.	224372404	224373682	0	1	1278	0
chr1	224373054	224374280	prostate_carcinoma.14170	0	.	224373054	224374280	0	1	1226	0
chr1	224374089	224375364	REMC_LuminalBreast.15389	0	.	224374089	224375364	0	1	1275	0
chr1	224374551	224375203	B_cells_Cheung.28197	0	.	224374551	224375203	0	1	652	0
chr1	224374582	224377462	B_Cells_Pritchard.451057	0	-	224374582	224377462	0	1	2880	0
chr1	224374710	224375712	REMC_MyoepithelialBreast.14368	0	.	224374710	224375712	0	1	1002	0
chr1	224375304	224375846	prostate_carcinoma.14171	0	.	224375304	224375846	0	1	542	0
chr1	224375340	224376076	B_cells_Cheung.28198	0	.	224375340	224376076	0	1	736	0
chr1	224375472	224376047	A549_Myers.10088	0	.	224375472	224376047	0	1	575	0
chr1	224375489	224375825	REMC_LuminalBreast.15390	0	.	224375489	224375825	0	1	336	0
chr1	224375900	224376599	prostate_carcinoma.14172	0	.	224375900	224376599	0	1	699	0
chr1	224376121	224377381	A549_Myers.10089	0	.	224376121	224377381	0	1	1260	0
chr1	224376151	224377356	B_cells_Cheung.28199	0	.	224376151	224377356	0	1	1205	0
chr1	224376526	224376856	CD4_Snyder.11325	0	.	224376526	224376856	0	1	330	0
chr1	224376933	224377266	H1_rRNA-depleted_UCSD_REMC.13662	0	.	224376933	224377266	0	1	333	0
chr1	224377017	224378140	REMC_LuminalBreast.15391	0	.	224377017	224378140	0	1	1123	0
chr1	224377168	224378152	REMC_MyoepithelialBreast.14369	0	.	224377168	224378152	0	1	984	0
chr1	224377520	224378956	H1_polyA+.16815	0	.	224377520	224378956	0	1	1436	0
chr1	224377602	224378890	B_cells_Cheung.28200	0	.	224377602	224378890	0	1	1288	0
chr1	224378336	224379856	REMC_LuminalBreast.15392	0	.	224378336	224379856	0	1	1520	0
chr1	224379142	224380225	prostate_carcinoma.14173	0	.	224379142	224380225	0	1	1083	0
chr1	224379175	224380144	REMC_MyoepithelialBreast.14370	0	.	224379175	224380144	0	1	969	0
chr1	224379373	224380258	REMC_BreastStem.8049	0	.	224379373	224380258	0	1	885	0
chr1	224379479	224380084	B_cells_Cheung.28201	0	.	224379479	224380084	0	1	605	0
chr1	224380998	224381846	REMC_BreastStem.8050	0	.	224380998	224381846	0	1	848	0
chr1	224381113	224382960	REMC_LuminalBreast.15393	0	.	224381113	224382960	0	1	1847	0
chr1	224381307	224381706	HepG2_Caltech_ENCODE.5519	0	.	224381307	224381706	0	1	399	0
chr1	224381327	224381792	B_cells_Cheung.28202	0	.	224381327	224381792	0	1	465	0
chr1	224381402	224381751	H1_polyA+.16816	0	.	224381402	224381751	0	1	349	0
chr1	224388472	224396905	A549_Myers.10096	0	-	224388472	224396905	0	2	440,61	0,8372
chr1	224389560	224390991	REMC_MyoepithelialBreast.14374	0	.	224389560	224390991	0	1	1431	0
chr1	224391676	224392204	B_cells_Cheung.28205	0	.	224391676	224392204	0	1	528	0
chr1	224397621	224397927	melanoma_Garraway_short_term_cultures.10521	0	.	224397621	224397927	0	1	306	0
chr1	224469521	224470046	A549_Myers.10105	0	.	224469521	224470046	0	1	525	0
chr1	224474757	224475482	B_Cells_Pritchard.451273	0	.	224474757	224475482	0	1	725	0
chr1	224593314	224605361	B_Cells_Pritchard.451515	0	+	224593314	224605361	0	2	76,446	0,11601
chr1	224593451	224596571	REMC_MyoepithelialBreast.14430	0	.	224593451	224596571	0	1	3120	0
chr1	224593638	224595127	REMC_LuminalBreast.15402	0	.	224593638	224595127	0	1	1489	0
chr1	224603230	224603649	B_cells_Cheung.28259	0	.	224603230	224603649	0	1	419	0
chr1	224603967	224605258	REMC_MyoepithelialBreast.14433	0	.	224603967	224605258	0	1	1291	0
chr1	224604712	224605311	B_cells_Cheung.28260	0	.	224604712	224605311	0	1	599	0
chr1	224606503	224606922	B_Cells_Pritchard.451525	0	+	224606503	224606922	0	1	419	0
chr1	224609155	224611491	B_Cells_Pritchard.451529	0	+	224609155	224611491	0	1	2336	0
chr1	224609161	224613076	prostate_normal.8742	0	-	224609161	224613076	0	2	73,1290	0,2625
chr1	224609163	224611480	CD4_Plagnol_activated.10237	0	.	224609163	224611480	0	1	2317	0
chr1	224609179	224610965	CD4_Plagnol_resting.9980	0	.	224609179	224610965	0	1	1786	0
chr1	224609443	224611500	melanoma_Garraway_short_term_cultures.10526	0	.	224609443	224611500	0	1	2057	0
chr1	224609448	224609933	K562.7379	0	.	224609448	224609933	0	1	485	0
chr1	224611618	224612609	CD4_Plagnol_resting.10048	0	.	224611618	224612609	0	1	991	0
chr1	224611627	224612889	prostate_carcinoma.14198	0	.	224611627	224612889	0	1	1262	0
chr1	224611687	224612670	BT474_Burge_Thompson.4811	0	.	224611687	224612670	0	1	983	0
chr1	224612424	224613938	REMC_BreastStem.8057	0	.	224612424	224613938	0	1	1514	0
chr1	224776129	224776648	B_Cells_Pritchard.452057	0	.	224776129	224776648	0	1	519	0
chr1	224776177	224776620	BT474_Burge_Thompson.4813	0	.	224776177	224776620	0	1	443	0
chr1	224789902	224792390	MeI_Garraway.2872	0	.	224789902	224792390	0	1	2488	0
chr1	224789939	224791913	MeWo_Garraway.5513	0	.	224789939	224791913	0	1	1974	0
chr1	224789941	224797092	HIT000012470	0	-	224789941	224797092	0	3	3082,119,130	0,5519,7021
chr1	224789947	224795580	HepG2_Caltech_ENCODE.5530	0	-	224789947	224795580	0	2	3076,120	0,5513
chr1	224789969	224791730	melanoma_Garraway_short_term_cultures.10539	0	.	224789969	224791730	0	1	1761	0
chr1	224791840	224795484	melanoma_Garraway_short_term_cultures.10541	0	-	224791840	224795484	0	2	1183,24	0,3620
chr1	224791840	224793038	melanoma_Garraway_short_term_cultures.10540	0	.	224791840	224793038	0	1	1198	0
chr1	224792030	224793116	MeWo_Garraway.5514	0	.	224792030	224793116	0	1	1086	0
chr1	224865070	224865809	H1_polyA+.16895	0	.	224865070	224865809	0	1	739	0
chr1	225041484	225043023	BT474_Burge_Thompson.4817	0	.	225041484	225043023	0	1	1539	0
chr1	225050965	225051282	B_cells_Cheung.28341	0	.	225050965	225051282	0	1	317	0
chr1	225065052	225070966	B_Cells_Pritchard.452823	0	-	225065052	225070966	0	2	47,758	0,5156
chr1	225065400	225067015	B_cells_Cheung.28345	0	.	225065400	225067015	0	1	1615	0
chr1	225065435	225070123	B_Cells_Pritchard.452827	0	+	225065435	225070123	0	4	93,65,311,132	0,128,3131,4556
chr1	225065462	225067033	MeWo_Garraway.5529	0	.	225065462	225067033	0	1	1571	0
chr1	225072107	225072882	B_Cells_Pritchard.452883	0	.	225072107	225072882	0	1	775	0
chr1	225074291	225076875	B_cells_Cheung.28352	0	.	225074291	225076875	0	1	2584	0
chr1	225078306	225080738	B_cells_Cheung.28355	0	.	225078306	225080738	0	1	2432	0
chr1	225080902	225082741	B_cells_Cheung.28356	0	.	225080902	225082741	0	1	1839	0
chr1	225081287	225082192	B_Cells_Pritchard.452929	0	.	225081287	225082192	0	1	905	0
chr1	225572496	225572817	IMR90_UCSD_REMC.7755	0	+	225572496	225572817	0	1	321	0
chr1	225773283	225773942	prostate_carcinoma.14298	0	.	225773283	225773942	0	1	659	0
chr1	225782621	225783866	REMC_LuminalBreast.15456	0	.	225782621	225783866	0	1	1245	0
chr1	225784264	225785136	REMC_MyoepithelialBreast.14452	0	.	225784264	225785136	0	1	872	0
chr1	225785865	225786345	B_Cells_Pritchard.454453	0	.	225785865	225786345	0	1	480	0
chr1	225786018	225786568	REMC_LuminalBreast.15457	0	.	225786018	225786568	0	1	550	0
chr1	225786549	225787096	B_Cells_Pritchard.454455	0	.	225786549	225787096	0	1	547	0
chr1	225786900	225787504	REMC_MyoepithelialBreast.14453	0	.	225786900	225787504	0	1	604	0
chr1	225794517	225795368	T47D_Burge_Thompson.4313	0	.	225794517	225795368	0	1	851	0
chr1	225794524	225796184	B_Cells_Pritchard.454481	0	.	225794524	225796184	0	1	1660	0
chr1	225794806	225796415	prostate_carcinoma.14303	0	.	225794806	225796415	0	1	1609	0
chr1	225794928	225796221	H1_polyA+.16995	0	.	225794928	225796221	0	1	1293	0
chr1	225795217	225796199	MIP101.10127	0	.	225795217	225796199	0	1	982	0
chr1	225795930	225797264	A549_Myers.10228	0	.	225795930	225797264	0	1	1334	0
chr1	225796346	225796901	B_Cells_Pritchard.454479	0	.	225796346	225796901	0	1	555	0
chr1	225796487	225797020	prostate_carcinoma.14304	0	.	225796487	225797020	0	1	533	0
chr1	225798613	225799554	REMC_MyoepithelialBreast.14458	0	.	225798613	225799554	0	1	941	0
chr1	225802204	225803108	REMC_MyoepithelialBreast.14459	0	.	225802204	225803108	0	1	904	0
chr1	225804634	225806206	REMC_MyoepithelialBreast.14461	0	.	225804634	225806206	0	1	1572	0
chr1	225807561	225809297	REMC_LuminalBreast.15459	0	.	225807561	225809297	0	1	1736	0
chr1	225917862	225918435	prostate_carcinoma.14319	0	.	225917862	225918435	0	1	573	0
chr1	225921288	225923737	B_cells_Cheung.28524	0	.	225921288	225923737	0	1	2449	0
chr1	225921346	225924623	B_Cells_Pritchard.454771	0	.	225921346	225924623	0	1	3277	0
chr1	225921407	225925168	REMC_LuminalBreast.15474	0	.	225921407	225925168	0	1	3761	0
chr1	225922791	225923656	melanoma_Garraway_short_term_cultures.10611	0	.	225922791	225923656	0	1	865	0
chr1	225924738	225928198	B_Cells_Pritchard.454773	0	.	225924738	225928198	0	1	3460	0
chr1	225930001	225933884	prostate_carcinoma.14308	0	+	225930001	225933884	0	2	455,2474	0,1409
chr1	225931410	225933958	H1_polyA+.17025	0	.	225931410	225933958	0	1	2548	0
chr1	225931410	225934852	B_cells_Cheung.28531	0	.	225931410	225934852	0	1	3442	0
chr1	225931423	225933886	B_Cells_Pritchard.454783	0	.	225931423	225933886	0	1	2463	0
chr1	225931428	225933242	BT474_Burge_Thompson.4840	0	.	225931428	225933242	0	1	1814	0
chr1	225931441	225933995	REMC_LuminalBreast.15477	0	.	225931441	225933995	0	1	2554	0
chr1	225931465	225933897	HepG2_Caltech_ENCODE.5552	0	.	225931465	225933897	0	1	2432	0
chr1	225931481	225932141	MCF10A_Thompson.3578	0	.	225931481	225932141	0	1	660	0
chr1	225931483	225933881	REMC_MyoepithelialBreast.14475	0	.	225931483	225933881	0	1	2398	0
chr1	225931509	225933166	MDAMB231_Thompson.3602	0	.	225931509	225933166	0	1	1657	0
chr1	225931639	225933729	melanoma_Garraway_short_term_cultures.10612	0	.	225931639	225933729	0	1	2090	0
chr1	225931770	225932555	T47D_Burge_Thompson.4323	0	.	225931770	225932555	0	1	785	0
chr1	225934909	225935212	B_cells_Cheung.28532	0	.	225934909	225935212	0	1	303	0
chr1	225944309	225944841	B_cells_Cheung.28540	0	.	225944309	225944841	0	1	532	0
chr1	225944361	225945738	B_Cells_Pritchard.454823	0	.	225944361	225945738	0	1	1377	0
chr1	225947296	225947823	B_Cells_Pritchard.454829	0	.	225947296	225947823	0	1	527	0
chr1	225967462	225968199	REMC_LuminalBreast.15486	0	.	225967462	225968199	0	1	737	0
chr1	225967702	225968373	B_Cells_Pritchard.454965	0	.	225967702	225968373	0	1	671	0
chr1	225968463	225970051	REMC_LuminalBreast.15487	0	.	225968463	225970051	0	1	1588	0
chr1	225968495	225969722	B_Cells_Pritchard.454967	0	.	225968495	225969722	0	1	1227	0
chr1	225975654	225976651	REMC_MyoepithelialBreast.14477	0	.	225975654	225976651	0	1	997	0
chr1	225975695	225976706	REMC_LuminalBreast.15489	0	.	225975695	225976706	0	1	1011	0
chr1	225979252	225980667	REMC_LuminalBreast.15492	0	.	225979252	225980667	0	1	1415	0
chr1	225980487	225981746	REMC_MyoepithelialBreast.14479	0	.	225980487	225981746	0	1	1259	0
chr1	225980614	225982049	B_Cells_Pritchard.455029	0	.	225980614	225982049	0	1	1435	0
chr1	225980721	225982682	REMC_LuminalBreast.15493	0	.	225980721	225982682	0	1	1961	0
chr1	225980721	225982798	B_cells_Cheung.28561	0	.	225980721	225982798	0	1	2077	0
chr1	225980723	225981984	BT20_Thompson.3476	0	.	225980723	225981984	0	1	1261	0
chr1	225980723	225982013	melanoma_Garraway_short_term_cultures.10614	0	.	225980723	225982013	0	1	1290	0
chr1	225982161	225982675	melanoma_Garraway_short_term_cultures.10615	0	.	225982161	225982675	0	1	514	0
chr1	225982414	225982791	A549_Myers.10242	0	.	225982414	225982791	0	1	377	0
chr1	226039849	226041808	B_cells_Cheung.28576	0	.	226039849	226041808	0	1	1959	0
chr1	226040180	226041348	H1_polyA+.17040	0	.	226040180	226041348	0	1	1168	0
chr1	226040332	226041601	REMC_LuminalBreast.15505	0	.	226040332	226041601	0	1	1269	0
chr1	226041005	226041944	brain_AmbionMAQC.6801	0	.	226041005	226041944	0	1	939	0
chr1	226041040	226042345	B_Cells_Pritchard.455975	0	+	226041040	226042345	0	1	1305	0
chr1	226041436	226044914	prostate_carcinoma.14340	0	+	226041436	226044914	0	2	23,988	0,2490
chr1	226042200	226042559	A549_Myers.10262	0	.	226042200	226042559	0	1	359	0
chr1	226042656	226043331	A549_Myers.10263	0	.	226042656	226043331	0	1	675	0
chr1	226042673	226044943	brain_AmbionMAQC.6802	0	+	226042673	226044943	0	2	550,1515	0,755
chr1	226042775	226044914	prostate_carcinoma.14341	0	.	226042775	226044914	0	1	2139	0
chr1	226042819	226051741	REMC_BreastStem.8128	0	+	226042819	226051741	0	2	404,128	0,8794
chr1	226042819	226044188	REMC_BreastStem.8129	0	.	226042819	226044188	0	1	1369	0
chr1	226042854	226046595	REMC_LuminalBreast.15506	0	+	226042854	226046595	0	2	369,3217	0,524
chr1	226042984	226043928	B_Cells_Pritchard.455045	0	.	226042984	226043928	0	1	944	0
chr1	226043155	226045059	H1_polyA+.17041	0	.	226043155	226045059	0	1	1904	0
chr1	226043327	226046431	REMC_MyoepithelialBreast.14492	0	.	226043327	226046431	0	1	3104	0
chr1	226043428	226043799	A549_Myers.10264	0	.	226043428	226043799	0	1	371	0
chr1	226046782	226048858	REMC_LuminalBreast.15507	0	.	226046782	226048858	0	1	2076	0
chr1	226123552	226125092	REMC_BreastStem.8137	0	.	226123552	226125092	0	1	1540	0
chr1	226137435	226137817	A549_Myers.10268	0	.	226137435	226137817	0	1	382	0
chr1	226140457	226140870	B_Cells_Pritchard.455301	0	.	226140457	226140870	0	1	413	0
chr1	226148468	226149100	A549_Myers.10272	0	.	226148468	226149100	0	1	632	0
chr1	226152415	226153551	BT474_Burge_Thompson.4843	0	.	226152415	226153551	0	1	1136	0
chr1	226153660	226154092	BT474_Burge_Thompson.4844	0	.	226153660	226154092	0	1	432	0
chr1	226153733	226154302	ZR751_Thompson.3940	0	.	226153733	226154302	0	1	569	0
chr1	226158187	226158737	A549_Myers.10274	0	.	226158187	226158737	0	1	550	0
chr1	226171170	226171492	A549_Myers.10278	0	.	226171170	226171492	0	1	322	0
chr1	226172280	226172930	BT474_Burge_Thompson.4845	0	.	226172280	226172930	0	1	650	0
chr1	226203100	226208857	REMC_BreastStem.8158	0	+	226203100	226208857	0	2	688,176	0,5581
chr1	226203944	226204928	REMC_LuminalBreast.15516	0	.	226203944	226204928	0	1	984	0
chr1	226221664	226224786	XR_037362	0	+	226221664	226224786	0	2	1249,1873	0,1249
chr1	226221981	226225476	ENST00000512171	0	-	226221981	226225476	0	2	1247,380	0,3115
chr1	226223283	226226105	XR_038700	0	+	226223283	226226105	0	6	97,81,102,206,617,114	0,961,1215,1601,1924,2708
chr1	226224538	226228819	HIT000017809	0	+	226224538	226228819	0	2	1304,965	0,3316
chr1	226224615	226225124	REMC_BreastStem.8143	0	.	226224615	226225124	0	1	509	0
chr1	226226310	226226629	REMC_BreastStem.8144	0	.	226226310	226226629	0	1	319	0
chr1	226227444	226228713	REMC_BreastStem.8145	0	.	226227444	226228713	0	1	1269	0
chr1	226315683	226322089	prostate_carcinoma.14363	0	-	226315683	226322089	0	2	578,583	0,5823
chr1	226317521	226317889	A549_Myers.10316	0	.	226317521	226317889	0	1	368	0
chr1	226318957	226322089	prostate_carcinoma.14365	0	.	226318957	226322089	0	1	3132	0
chr1	226319339	226320248	B_Cells_Pritchard.455915	0	.	226319339	226320248	0	1	909	0
chr1	226321659	226321991	B_Cells_Pritchard.455919	0	.	226321659	226321991	0	1	332	0
chr1	226322548	226334960	B_Cells_Pritchard.519901	0	+	226322548	226334960	0	2	6455,2573	0,9839
chr1	226322574	226328086	prostate_carcinoma.14366	0	.	226322574	226328086	0	1	5512	0
chr1	226322771	226324009	melanoma_Garraway_short_term_cultures.10624	0	.	226322771	226324009	0	1	1238	0
chr1	226322806	226323463	prostate_normal.8854	0	.	226322806	226323463	0	1	657	0
chr1	226324166	226325231	melanoma_Garraway_short_term_cultures.10625	0	.	226324166	226325231	0	1	1065	0
chr1	226324553	226324955	B_cells_Cheung.28586	0	.	226324553	226324955	0	1	402	0
chr1	226324919	226326871	BT474_Burge_Thompson.4859	0	.	226324919	226326871	0	1	1952	0
chr1	226324972	226332025	prostate_normal.8855	0	+	226324972	226332025	0	2	1898,1033	0,6020
chr1	226324972	226326918	prostate_normal.8856	0	.	226324972	226326918	0	1	1946	0
chr1	226325053	226327214	B_cells_Cheung.28587	0	.	226325053	226327214	0	1	2161	0
chr1	226325118	226327262	H1_polyA+.17060	0	.	226325118	226327262	0	1	2144	0
chr1	226325379	226326867	melanoma_Garraway_short_term_cultures.10626	0	.	226325379	226326867	0	1	1488	0
chr1	226325437	226325992	MCF7_Burge_Thompson.4772	0	.	226325437	226325992	0	1	555	0
chr1	226325822	226326529	ovary_Raymond.37733	0	.	226325822	226326529	0	1	707	0
chr1	226326166	226327204	REMC_LuminalBreast.15523	0	.	226326166	226327204	0	1	1038	0
chr1	226326239	226326910	ZR751_Thompson.3984	0	.	226326239	226326910	0	1	671	0
chr1	226326332	226327050	CD4_Plagnol_resting.10030	0	.	226326332	226327050	0	1	718	0
chr1	226327299	226328126	B_cells_Cheung.28588	0	.	226327299	226328126	0	1	827	0
chr1	226327489	226328004	prostate_normal.8857	0	.	226327489	226328004	0	1	515	0
chr1	226327564	226333707	khalil_185	0	.	226327564	226333707	0	5	327,537,359,164,289	0,788,1800,4878,5854
chr1	226327600	226327987	A549_Myers.10317	0	.	226327600	226327987	0	1	387	0
chr1	226328195	226330874	HIT000025760	0	-	226328195	226330874	0	1	2679	0
chr1	226328341	226328652	prostate_normal.8859	0	.	226328341	226328652	0	1	311	0
chr1	226328358	226329223	B_cells_Cheung.28589	0	.	226328358	226329223	0	1	865	0
chr1	226329104	226335214	B_Cells_Pritchard.519903	0	-	226329104	226335214	0	2	1248,326	0,5784
chr1	226329290	226332908	B_cells_Cheung.28590	0	.	226329290	226332908	0	1	3618	0
chr1	226329307	226330254	prostate_normal.8860	0	.	226329307	226330254	0	1	947	0
chr1	226329458	226330669	H1_polyA+.17061	0	.	226329458	226330669	0	1	1211	0
chr1	226329797	226330558	MIP101.10155	0	.	226329797	226330558	0	1	761	0
chr1	226329822	226331172	REMC_LuminalBreast.15524	0	.	226329822	226331172	0	1	1350	0
chr1	226329972	226330458	A549_Myers.10319	0	.	226329972	226330458	0	1	486	0
chr1	226331486	226332152	HeLa_polyA-_Chen.3045	0	.	226331486	226332152	0	1	666	0
chr1	226332584	226334378	REMC_LuminalBreast.15525	0	.	226332584	226334378	0	1	1794	0
chr1	226332976	226335356	B_cells_Cheung.28591	0	.	226332976	226335356	0	1	2380	0
chr1	226333258	226334412	HeLa_polyA-_Chen.3046	0	.	226333258	226334412	0	1	1154	0
chr1	226333741	226334647	H1_polyA+.17062	0	.	226333741	226334647	0	1	906	0
chr1	226366381	226368679	REMC_LuminalBreast.15662	0	.	226366381	226368679	0	1	2298	0
chr1	226367547	226368679	B_cells_Cheung.28717	0	.	226367547	226368679	0	1	1132	0
chr1	226367569	226368639	H1_polyA+.17073	0	.	226367569	226368639	0	1	1070	0
chr1	226368131	226368605	HepG2_Caltech_ENCODE.5565	0	.	226368131	226368605	0	1	474	0
chr1	226378941	226379626	B_cells_Cheung.28727	0	.	226378941	226379626	0	1	685	0
chr1	226384928	226385830	REMC_LuminalBreast.15668	0	.	226384928	226385830	0	1	902	0
chr1	226416177	226417025	B_cells_Cheung.28752	0	.	226416177	226417025	0	1	848	0
chr1	226417120	226418074	REMC_BreastStem.8174	0	.	226417120	226418074	0	1	954	0
chr1	226417313	226417738	B_cells_Cheung.28753	0	.	226417313	226417738	0	1	425	0
chr1	226437796	226439354	REMC_BreastStem.8179	0	.	226437796	226439354	0	1	1558	0
chr1	226437982	226438734	BT20_Thompson.3491	0	.	226437982	226438734	0	1	752	0
chr1	226438061	226438807	HeLa_polyA+_Chen.5598	0	.	226438061	226438807	0	1	746	0
chr1	226438124	226439210	B_cells_Cheung.28756	0	.	226438124	226439210	0	1	1086	0
chr1	226438126	226438777	BT474_Burge_Thompson.4882	0	.	226438126	226438777	0	1	651	0
chr1	226438126	226438834	MCF7_Burge_Thompson.4805	0	.	226438126	226438834	0	1	708	0
chr1	226438126	226438735	T47D_Burge_Thompson.4384	0	.	226438126	226438735	0	1	609	0
chr1	226438129	226439059	CD4_Plagnol_activated.10368	0	.	226438129	226439059	0	1	930	0
chr1	226438137	226438902	brain_AmbionMAQC.6835	0	.	226438137	226438902	0	1	765	0
chr1	226438138	226438735	prostate_normal.9212	0	.	226438138	226438735	0	1	597	0
chr1	226438138	226439074	prostate_carcinoma.14385	0	.	226438138	226439074	0	1	936	0
chr1	226438138	226438735	B_Cells_Pritchard.456143	0	-	226438138	226438735	0	1	597	0
chr1	226438140	226438807	CD4_Plagnol_resting.10068	0	.	226438140	226438807	0	1	667	0
chr1	226438151	226438956	MDAMB468_Thompson.4089	0	.	226438151	226438956	0	1	805	0
chr1	226438155	226438862	melanoma_Garraway_short_term_cultures.10656	0	.	226438155	226438862	0	1	707	0
chr1	226438159	226438795	H9_polyA+.7136	0	.	226438159	226438795	0	1	636	0
chr1	226441687	226447837	REMC_LuminalBreast.15685	0	.	226441687	226447837	0	1	6150	0
chr1	226443898	226445477	prostate_carcinoma.14386	0	.	226443898	226445477	0	1	1579	0
chr1	226444132	226444904	brain_AmbionMAQC.6838	0	.	226444132	226444904	0	1	772	0
chr1	226444406	226445485	MIP101.11339	0	.	226444406	226445485	0	1	1079	0
chr1	226445050	226445724	brain_AmbionMAQC.6839	0	.	226445050	226445724	0	1	674	0
chr1	226446188	226446784	B_Cells_Pritchard.456191	0	.	226446188	226446784	0	1	596	0
chr1	226446385	226447827	prostate_carcinoma.14389	0	.	226446385	226447827	0	1	1442	0
chr1	226446622	226447857	H1_polyA+.17150	0	.	226446622	226447857	0	1	1235	0
chr1	226446966	226447496	brain_AmbionMAQC.6841	0	.	226446966	226447496	0	1	530	0
chr1	226451177	226455264	B_Cells_Pritchard.456211	0	+	226451177	226455264	0	3	1648,614,1464	0,1909,2623
chr1	226456562	226456999	B_Cells_Pritchard.456217	0	.	226456562	226456999	0	1	437	0
chr1	226645152	226646872	brain_AmbionMAQC.6861	0	.	226645152	226646872	0	1	1720	0
chr1	226645502	226646207	MDAMB468_Thompson.4115	0	.	226645502	226646207	0	1	705	0
chr1	226645525	226646866	H9_polyA+.7169	0	.	226645525	226646866	0	1	1341	0
chr1	226645544	226645919	A549_Myers.10450	0	.	226645544	226645919	0	1	375	0
chr1	226645581	226646563	MCF7_Burge_Thompson.4839	0	.	226645581	226646563	0	1	982	0
chr1	226645900	226646865	ZR751_Thompson.4052	0	.	226645900	226646865	0	1	965	0
chr1	226645948	226646622	BT474_Burge_Thompson.4899	0	.	226645948	226646622	0	1	674	0
chr1	226645994	226646679	A549_Myers.10451	0	.	226645994	226646679	0	1	685	0
chr1	226673649	226675630	melanoma_Garraway_short_term_cultures.10706	0	.	226673649	226675630	0	1	1981	0
chr1	226674074	226675656	B_cells_Cheung.28812	0	.	226674074	226675656	0	1	1582	0
chr1	226674370	226675565	REMC_BreastStem.8197	0	.	226674370	226675565	0	1	1195	0
chr1	226714458	226715571	MDAMB468_Thompson.4242	0	.	226714458	226715571	0	1	1113	0
chr1	226714462	226715061	prostate_carcinoma.14428	0	.	226714462	226715061	0	1	599	0
chr1	226714576	226716400	BT20_Thompson.3502	0	.	226714576	226716400	0	1	1824	0
chr1	226714589	226715209	MCF7_Burge_Thompson.4850	0	.	226714589	226715209	0	1	620	0
chr1	226714606	226715061	T47D_Burge_Thompson.4424	0	.	226714606	226715061	0	1	455	0
chr1	226714608	226714961	ZR751_Thompson.4060	0	.	226714608	226714961	0	1	353	0
chr1	226714621	226715548	K562.7539	0	.	226714621	226715548	0	1	927	0
chr1	226725153	226725470	B_Cells_Pritchard.457065	0	.	226725153	226725470	0	1	317	0
chr1	226733257	226733992	A549_Myers.11058	0	.	226733257	226733992	0	1	735	0
chr1	226733579	226733992	B_Cells_Pritchard.457091	0	.	226733579	226733992	0	1	413	0
chr1	226737840	226739008	B_cells_Cheung.28839	0	.	226737840	226739008	0	1	1168	0
chr1	226752222	226752669	A549_Myers.10461	0	.	226752222	226752669	0	1	447	0
chr1	226752860	226753836	melanoma_Garraway_short_term_cultures.10717	0	.	226752860	226753836	0	1	976	0
chr1	226755085	226758570	B_cells_Cheung.29033	0	.	226755085	226758570	0	1	3485	0
chr1	226755234	226756075	MIP101.10218	0	.	226755234	226756075	0	1	841	0
chr1	226755544	226756346	CD4_Plagnol_resting.10243	0	.	226755544	226756346	0	1	802	0
chr1	226755604	226764599	Rinn_00001318	0	+	226755604	226764599	0	3	47,135,386	0,7419,8609
chr1	226755823	226757142	prostate_carcinoma.14437	0	.	226755823	226757142	0	1	1319	0
chr1	226756409	226757252	MIP101.10219	0	.	226756409	226757252	0	1	843	0
chr1	226758038	226758639	CD4_Plagnol_activated.10540	0	.	226758038	226758639	0	1	601	0
chr1	226762235	226764635	MDAMB468_Thompson.4250	0	+	226762235	226764635	0	2	923,421	0,1979
chr1	226762277	226763721	CD4_Plagnol_resting.10245	0	.	226762277	226763721	0	1	1444	0
chr1	226769038	226769705	REMC_MyoepithelialBreast.14662	0	.	226769038	226769705	0	1	667	0
chr1	226769460	226770033	CD4_Plagnol_resting.10106	0	.	226769460	226770033	0	1	573	0
chr1	226857808	226858586	MIP101.10222	0	.	226857808	226858586	0	1	778	0
chr1	226857813	226858900	HeLa_polyA+_Chen.5661	0	.	226857813	226858900	0	1	1087	0
chr1	226890437	226892366	HeLa_polyA+_Chen.5667	0	.	226890437	226892366	0	1	1929	0
chr1	226984644	226985247	A549_Myers.10485	0	.	226984644	226985247	0	1	603	0
chr1	226998088	226998454	A549_Myers.10486	0	.	226998088	226998454	0	1	366	0
chr1	227044507	227044859	A549_Myers.10490	0	.	227044507	227044859	0	1	352	0
chr1	227063832	227064161	A549_Myers.10491	0	.	227063832	227064161	0	1	329	0
chr1	227100943	227101406	A549_Myers.10495	0	.	227100943	227101406	0	1	463	0
chr1	227117002	227119577	HIT000018791	0	-	227117002	227119577	0	1	2575	0
chr1	227171204	227171794	prostate_carcinoma.14447	0	.	227171204	227171794	0	1	590	0
chr1	227172890	227174058	prostate_carcinoma.14448	0	.	227172890	227174058	0	1	1168	0
chr1	227178680	227182139	prostate_carcinoma.14452	0	.	227178680	227182139	0	1	3459	0
chr1	227182228	227182916	prostate_carcinoma.14453	0	.	227182228	227182916	0	1	688	0
chr1	227191115	227192076	prostate_carcinoma.14454	0	.	227191115	227192076	0	1	961	0
chr1	227264795	227265425	A549_Myers.10511	0	.	227264795	227265425	0	1	630	0
chr1	227289535	227290223	REMC_BreastStem.8207	0	.	227289535	227290223	0	1	688	0
chr1	227289566	227291565	MCF7_Burge_Thompson.4859	0	.	227289566	227291565	0	1	1999	0
chr1	227289723	227297803	prostate_carcinoma.14456	0	-	227289723	227297803	0	2	2598,3928	0,4152
chr1	227290578	227291504	H1_polyA+.17130	0	.	227290578	227291504	0	1	926	0
chr1	227290607	227291504	prostate_normal.8883	0	.	227290607	227291504	0	1	897	0
chr1	227291640	227292723	MCF7_Burge_Thompson.4860	0	.	227291640	227292723	0	1	1083	0
chr1	227292331	227292690	prostate_carcinoma.14457	0	.	227292331	227292690	0	1	359	0
chr1	227294345	227297313	BT20_Thompson.3545	0	-	227294345	227297313	0	2	1313,163	0,2805
chr1	227294345	227295780	BT20_Thompson.3544	0	.	227294345	227295780	0	1	1435	0
chr1	227294454	227296156	MCF7_Burge_Thompson.4862	0	.	227294454	227296156	0	1	1702	0
chr1	227294542	227295655	REMC_BreastStem.8208	0	.	227294542	227295655	0	1	1113	0
chr1	227295184	227297275	ENST00000433734	0	-	227295184	227297275	0	2	474,125	0,1966
chr1	227298166	227299349	prostate_carcinoma.14458	0	.	227298166	227299349	0	1	1183	0
chr1	227303401	227305237	prostate_carcinoma.14460	0	.	227303401	227305237	0	1	1836	0
chr1	227324811	227326090	prostate_carcinoma.14461	0	.	227324811	227326090	0	1	1279	0
chr1	227324894	227325394	A549_Myers.10516	0	.	227324894	227325394	0	1	500	0
chr1	227377527	227378474	H1_polyA+.17132	0	-	227377527	227378474	0	3	221,149,63	0,660,884
chr1	227392288	227394007	prostate_carcinoma.14465	0	.	227392288	227394007	0	1	1719	0
chr1	227393123	227393983	REMC_LuminalBreast.15738	0	.	227393123	227393983	0	1	860	0
chr1	227394106	227396139	REMC_LuminalBreast.15739	0	.	227394106	227396139	0	1	2033	0
chr1	227398276	227399107	REMC_LuminalBreast.15740	0	.	227398276	227399107	0	1	831	0
chr1	227399626	227400180	prostate_carcinoma.14466	0	.	227399626	227400180	0	1	554	0
chr1	227422232	227423576	prostate_carcinoma.14467	0	.	227422232	227423576	0	1	1344	0
chr1	227447483	227448608	REMC_MyoepithelialBreast.14667	0	.	227447483	227448608	0	1	1125	0
chr1	227447954	227449201	H1_polyA+.17134	0	.	227447954	227449201	0	1	1247	0
chr1	227451452	227451960	B_Cells_Pritchard.458743	0	.	227451452	227451960	0	1	508	0
chr1	227460226	227460575	MIP101.10232	0	.	227460226	227460575	0	1	349	0
chr1	227462727	227463635	prostate_carcinoma.14473	0	.	227462727	227463635	0	1	908	0
chr1	227462758	227463652	REMC_MyoepithelialBreast.14670	0	.	227462758	227463652	0	1	894	0
chr1	227465294	227466012	prostate_carcinoma.14475	0	.	227465294	227466012	0	1	718	0
chr1	227465301	227465991	K562.7550	0	.	227465301	227465991	0	1	690	0
chr1	227465338	227465987	prostate_normal.8890	0	.	227465338	227465987	0	1	649	0
chr1	227465340	227466231	REMC_LuminalBreast.15743	0	.	227465340	227466231	0	1	891	0
chr1	227466251	227472058	ZR751_Thompson.4087	0	.	227466251	227472058	0	1	5807	0
chr1	227466266	227471975	MCF10A_Thompson.3673	0	.	227466266	227471975	0	1	5709	0
chr1	227466281	227472020	BT474_Burge_Thompson.4925	0	.	227466281	227472020	0	1	5739	0
chr1	227466297	227472021	MDAMB468_Thompson.4146	0	.	227466297	227472021	0	1	5724	0
chr1	227466309	227472001	B_Cells_Pritchard.458777	0	+	227466309	227472001	0	2	3848,1739	0,3953
chr1	227467532	227471984	BT20_Thompson.3548	0	.	227467532	227471984	0	1	4452	0
chr1	227469224	227471986	T47D_Burge_Thompson.4431	0	.	227469224	227471986	0	1	2762	0
chr1	227469817	227472467	MIP101.10231	0	-	227469817	227472467	0	2	199,2189	0,461
chr1	227470207	227471878	HeLa_polyA+_Chen.5676	0	.	227470207	227471878	0	1	1671	0
chr1	227470241	227471476	MIP101.10230	0	.	227470241	227471476	0	1	1235	0
chr1	227470243	227471992	MCF7_Burge_Thompson.4867	0	.	227470243	227471992	0	1	1749	0
chr1	227470281	227471970	melanoma_Garraway_short_term_cultures.10727	0	.	227470281	227471970	0	1	1689	0
chr1	227470290	227471433	liver_polyA+.20547	0	.	227470290	227471433	0	1	1143	0
chr1	227470320	227471970	NEC_from_H9.11869	0	.	227470320	227471970	0	1	1650	0
chr1	227470328	227471499	H9_polyA+.7201	0	.	227470328	227471499	0	1	1171	0
chr1	227509278	227512775	H1_polyA+.17168	0	.	227509278	227512775	0	1	3497	0
chr1	227509349	227512643	B_cells_Cheung.28892	0	.	227509349	227512643	0	1	3294	0
chr1	227514534	227514860	H1_rRNA-depleted_UCSD_REMC.13908	0	.	227514534	227514860	0	1	326	0
chr1	227514600	227515337	BT474_Burge_Thompson.4926	0	.	227514600	227515337	0	1	737	0
chr1	227514623	227515228	ZR751_Thompson.4084	0	.	227514623	227515228	0	1	605	0
chr1	227609110	227610547	H1_polyA+.17230	0	+	227609110	227610547	0	2	335,1016	0,421
chr1	227609750	227610144	brain_AmbionMAQC.6906	0	.	227609750	227610144	0	1	394	0
chr1	227611681	227612336	H9_polyA+.7211	0	.	227611681	227612336	0	1	655	0
chr1	227766775	227767238	prostate_carcinoma.14544	0	.	227766775	227767238	0	1	463	0
chr1	227863717	227864935	MDAMB468_Thompson.4175	0	.	227863717	227864935	0	1	1218	0
chr1	227864317	227871806	REMC_BreastStem.8237	0	.	227864317	227871806	0	1	7489	0
chr1	227864472	227873203	REMC_LuminalBreast.15800	0	.	227864472	227873203	0	1	8731	0
chr1	227864972	227867808	H9_polyA+.7238	0	.	227864972	227867808	0	1	2836	0
chr1	227865064	227867748	CD4_Plagnol_activated.10655	0	.	227865064	227867748	0	1	2684	0
chr1	227865116	227867836	HepG2_Caltech_ENCODE.5611	0	.	227865116	227867836	0	1	2720	0
chr1	227865310	227867666	K562.7587	0	.	227865310	227867666	0	1	2356	0
chr1	227865875	227867685	MIP101.10286	0	.	227865875	227867685	0	1	1810	0
chr1	227865972	227867683	prostate_carcinoma.14566	0	.	227865972	227867683	0	1	1711	0
chr1	227866114	227867751	MDAMB468_Thompson.4177	0	.	227866114	227867751	0	1	1637	0
chr1	227866268	227866665	H1_rRNA-depleted_UCSD_REMC.13970	0	.	227866268	227866665	0	1	397	0
chr1	227866301	227866774	BT474_Burge_Thompson.4946	0	.	227866301	227866774	0	1	473	0
chr1	227866357	227867749	melanoma_Garraway_short_term_cultures.10783	0	.	227866357	227867749	0	1	1392	0
chr1	227866388	227866903	A549_Myers.10574	0	.	227866388	227866903	0	1	515	0
chr1	227866517	227867848	HeLa_polyA+_Chen.5702	0	.	227866517	227867848	0	1	1331	0
chr1	227867916	227869310	HeLa_polyA+_Chen.5703	0	.	227867916	227869310	0	1	1394	0
chr1	227867932	227872451	B_cells_Cheung.29021	0	.	227867932	227872451	0	1	4519	0
chr1	227867933	227870387	MDAMB468_Thompson.4178	0	.	227867933	227870387	0	1	2454	0
chr1	227867939	227870990	H9_polyA+.7239	0	.	227867939	227870990	0	1	3051	0
chr1	227867947	227872419	CD4_Plagnol_activated.10656	0	.	227867947	227872419	0	1	4472	0
chr1	227867952	227870621	melanoma_Garraway_short_term_cultures.10784	0	.	227867952	227870621	0	1	2669	0
chr1	227867957	227872447	ZR751_Thompson.4091	0	.	227867957	227872447	0	1	4490	0
chr1	227867958	227870419	prostate_carcinoma.14567	0	.	227867958	227870419	0	1	2461	0
chr1	227867970	227872482	HepG2_Caltech_ENCODE.5612	0	.	227867970	227872482	0	1	4512	0
chr1	227867980	227869690	K562.7588	0	.	227867980	227869690	0	1	1710	0
chr1	227868100	227870990	H9_polyA+.7240	0	-	227868100	227870990	0	2	8,2781	0,109
chr1	227868569	227869141	prostate_normal.8950	0	.	227868569	227869141	0	1	572	0
chr1	227873418	227877060	REMC_LuminalBreast.15801	0	.	227873418	227877060	0	1	3642	0
chr1	227873825	227874817	CD4_Plagnol_activated.10657	0	.	227873825	227874817	0	1	992	0
chr1	227878964	227880377	REMC_LuminalBreast.15803	0	.	227878964	227880377	0	1	1413	0
chr1	227879034	227880963	REMC_MyoepithelialBreast.14905	0	.	227879034	227880963	0	1	1929	0
chr1	227990138	227990445	A549_Myers.10588	0	.	227990138	227990445	0	1	307	0
chr1	228174099	228174616	B_Cells_Pritchard.460699	0	.	228174099	228174616	0	1	517	0
chr1	228485752	228486515	H1_polyA+.17229	0	.	228485752	228486515	0	1	763	0
chr1	228485753	228486522	B_cells_Cheung.29036	0	.	228485753	228486522	0	1	769	0
chr1	228485778	228486429	prostate_carcinoma.14596	0	.	228485778	228486429	0	1	651	0
chr1	228485941	228486497	REMC_BreastStem.8243	0	.	228485941	228486497	0	1	556	0
chr1	228486901	228487227	B_cells_Cheung.29037	0	.	228486901	228487227	0	1	326	0
chr1	228490708	228492095	REMC_LuminalBreast.15897	0	.	228490708	228492095	0	1	1387	0
chr1	228490904	228491330	A549_Myers.10618	0	.	228490904	228491330	0	1	426	0
chr1	228494886	228496476	melanoma_Garraway_short_term_cultures.10792	0	.	228494886	228496476	0	1	1590	0
chr1	228495298	228496576	REMC_LuminalBreast.15899	0	.	228495298	228496576	0	1	1278	0
chr1	228496823	228498880	REMC_LuminalBreast.15900	0	.	228496823	228498880	0	1	2057	0
chr1	228501535	228507183	REMC_LuminalBreast.15901	0	.	228501535	228507183	0	1	5648	0
chr1	228511171	228511502	A549_Myers.10620	0	.	228511171	228511502	0	1	331	0
chr1	228516974	228517799	MDAMB468_Thompson.4156	0	.	228516974	228517799	0	1	825	0
chr1	228518641	228522380	MCF10A_Thompson.3662	0	.	228518641	228522380	0	1	3739	0
chr1	228518904	228520415	H9_polyA+.7245	0	.	228518904	228520415	0	1	1511	0
chr1	228519321	228519786	A549_Myers.10622	0	.	228519321	228519786	0	1	465	0
chr1	228628482	228628811	MDAMB468_Thompson.4162	0	.	228628482	228628811	0	1	329	0
chr1	228628919	228629394	brain_AmbionMAQC.6968	0	.	228628919	228629394	0	1	475	0
chr1	228638933	228640271	H1_polyA+.17280	0	.	228638933	228640271	0	1	1338	0
chr1	228639279	228640199	REMC_LuminalBreast.15943	0	.	228639279	228640199	0	1	920	0
chr1	228697548	228698535	BT474_Burge_Thompson.4961	0	.	228697548	228698535	0	1	987	0
chr1	228809653	228810077	H1_polyA+.17289	0	.	228809653	228810077	0	1	424	0
chr1	228944987	228945407	melanoma_Garraway_short_term_cultures.10806	0	.	228944987	228945407	0	1	420	0
chr1	229020247	229021753	REMC_LuminalBreast.15950	0	.	229020247	229021753	0	1	1506	0
chr1	229020376	229021601	MIP101.10323	0	.	229020376	229021601	0	1	1225	0
chr1	229022964	229023916	REMC_BreastStem.8250	0	.	229022964	229023916	0	1	952	0
chr1	229023470	229024569	melanoma_Garraway_short_term_cultures.10811	0	.	229023470	229024569	0	1	1099	0
chr1	229024204	229024979	MIP101.10325	0	.	229024204	229024979	0	1	775	0
chr1	229029671	229031174	MIP101.10327	0	.	229029671	229031174	0	1	1503	0
chr1	229033789	229035925	MIP101.10328	0	.	229033789	229035925	0	1	2136	0
chr1	229073455	229080591	prostate_carcinoma.14628	0	-	229073455	229080591	0	2	728,2174	0,4962
chr1	229078347	229080692	MIP101.10338	0	.	229078347	229080692	0	1	2345	0
chr1	229078425	229081435	H1_polyA+.17343	0	.	229078425	229081435	0	1	3010	0
chr1	229078459	229080743	HepG2_Caltech_ENCODE.5638	0	.	229078459	229080743	0	1	2284	0
chr1	229078485	229080329	prostate_normal.8977	0	.	229078485	229080329	0	1	1844	0
chr1	229078938	229080490	T47D_Burge_Thompson.4474	0	.	229078938	229080490	0	1	1552	0
chr1	229079470	229079888	B_Cells_Pritchard.462873	0	.	229079470	229079888	0	1	418	0
chr1	229104872	229106324	CD4_Plagnol_activated.10546	0	.	229104872	229106324	0	1	1452	0
chr1	229105614	229106320	CD4_Plagnol_resting.10274	0	.	229105614	229106320	0	1	706	0
chr1	229212790	229214850	melanoma_Garraway_short_term_cultures.10826	0	.	229212790	229214850	0	1	2060	0
chr1	229213320	229213856	MIP101.10357	0	.	229213320	229213856	0	1	536	0
chr1	229214042	229216347	REMC_MyoepithelialBreast.14753	0	.	229214042	229216347	0	1	2305	0
chr1	229215481	229216386	melanoma_Garraway_short_term_cultures.10827	0	.	229215481	229216386	0	1	905	0
chr1	229493719	229495168	MIP101.10378	0	.	229493719	229495168	0	1	1449	0
chr1	229494926	229495246	B_Cells_Pritchard.463841	0	.	229494926	229495246	0	1	320	0
chr1	229497614	229499048	H1_polyA+.17415	0	.	229497614	229499048	0	1	1434	0
chr1	229513435	229518125	H1_polyA+.17420	0	.	229513435	229518125	0	1	4690	0
chr1	229558627	229561423	REMC_BreastStem.8308	0	.	229558627	229561423	0	1	2796	0
chr1	229648568	229649026	B_Cells_Pritchard.464447	0	.	229648568	229649026	0	1	458	0
chr1	229770775	229771588	B_cells_Cheung.29161	0	.	229770775	229771588	0	1	813	0
chr1	229776927	229778308	melanoma_Garraway_short_term_cultures.10875	0	.	229776927	229778308	0	1	1381	0
chr1	229777133	229778070	REMC_LuminalBreast.15974	0	.	229777133	229778070	0	1	937	0
chr1	229793917	229813814	pHIT000003588	0	-	229793917	229813814	0	2	252,165	0,19732
chr1	230248162	230250141	melanoma_Garraway_short_term_cultures.10910	0	.	230248162	230250141	0	1	1979	0
chr1	230250588	230251544	melanoma_Garraway_short_term_cultures.10911	0	.	230250588	230251544	0	1	956	0
chr1	230259247	230260414	MIP101.10460	0	.	230259247	230260414	0	1	1167	0
chr1	230261355	230263004	melanoma_Garraway_short_term_cultures.10915	0	.	230261355	230263004	0	1	1649	0
chr1	230320856	230321382	H9_polyA+.7298	0	.	230320856	230321382	0	1	526	0
chr1	230321470	230322055	H9_polyA+.7299	0	.	230321470	230322055	0	1	585	0
chr1	230326150	230341223	H1_polyA+.17763	0	.	230326150	230341223	0	1	15073	0
chr1	230330368	230335401	H9_polyA+.7308	0	.	230330368	230335401	0	1	5033	0
chr1	230330426	230331902	H9_polyA-_Chen.2364	0	.	230330426	230331902	0	1	1476	0
chr1	230334447	230335115	H9_polyA-_Chen.2367	0	.	230334447	230335115	0	1	668	0
chr1	230334497	230335094	H1_rRNA-depleted_UCSD_REMC.14099	0	.	230334497	230335094	0	1	597	0
chr1	230335480	230337722	H9_polyA+.7307	0	.	230335480	230337722	0	1	2242	0
chr1	230343317	230343883	H1_rRNA-depleted_UCSD_REMC.14111	0	.	230343317	230343883	0	1	566	0
chr1	230343557	230347019	H9_polyA+.7309	0	.	230343557	230347019	0	1	3462	0
chr1	230367994	230369709	H1_polyA+.17774	0	.	230367994	230369709	0	1	1715	0
chr1	230368208	230369555	H9_polyA+.7346	0	.	230368208	230369555	0	1	1347	0
chr1	230376261	230379525	H9_polyA+.7350	0	.	230376261	230379525	0	1	3264	0
chr1	230376647	230377083	H9_polyA-_Chen.2374	0	.	230376647	230377083	0	1	436	0
chr1	230377263	230382484	HIT000096876	0	-	230377263	230382484	0	2	961,1323	0,3898
chr1	230377299	230382482	Rinn_00000761	0	-	230377299	230382482	0	2	925,1318	0,3865
chr1	230377300	230382482	ENST00000441459	0	-	230377300	230382482	0	2	924,1317	0,3865
chr1	230381980	230383792	H9_polyA+.7353	0	.	230381980	230383792	0	1	1812	0
chr1	230383914	230398858	H9_polyA+.7340	0	.	230383914	230398858	0	1	14944	0
chr1	230393748	230394200	H1_rRNA-depleted_UCSD_REMC.14134	0	.	230393748	230394200	0	1	452	0
chr1	230400635	230401101	H9_polyA+.7316	0	.	230400635	230401101	0	1	466	0
chr1	230401185	230402076	H9_polyA+.7317	0	.	230401185	230402076	0	1	891	0
chr1	230414234	230417194	H9_polyA+.7328	0	.	230414234	230417194	0	1	2960	0
chr1	230417270	230419071	H9_polyA+.7329	0	.	230417270	230419071	0	1	1801	0
chr1	230436841	230458773	H1_polyA+.17776	0	.	230436841	230458773	0	1	21932	0
chr1	230462966	230464526	H1_polyA+.17784	0	.	230462966	230464526	0	1	1560	0
chr1	230471577	230472420	H1_polyA+.17786	0	.	230471577	230472420	0	1	843	0
chr1	230475565	230480232	H1_polyA+.17787	0	.	230475565	230480232	0	1	4667	0
chr1	230480594	230484287	H1_polyA+.17788	0	.	230480594	230484287	0	1	3693	0
chr1	230483353	230483838	H9_polyA+.7364	0	.	230483353	230483838	0	1	485	0
chr1	230491515	230508908	H1_polyA+.17793	0	+	230491515	230508908	0	4	3837,203,287,4527	0,8766,11649,12866
chr1	230491515	230495919	H1_polyA+.17791	0	.	230491515	230495919	0	1	4404	0
chr1	230504071	230505359	H9_polyA+.7375	0	.	230504071	230505359	0	1	1288	0
chr1	230504292	230508908	H1_polyA+.17792	0	.	230504292	230508908	0	1	4616	0
chr1	230506127	230507020	H9_polyA+.7377	0	.	230506127	230507020	0	1	893	0
chr1	230512829	230516275	H1_polyA+.17447	0	.	230512829	230516275	0	1	3446	0
chr1	230513787	230515480	HIT000095199	0	-	230513787	230515480	0	2	728,427	0,1266
chr1	230517339	230518054	H1_polyA+.17448	0	.	230517339	230518054	0	1	715	0
chr1	230522134	230523376	H1_polyA+.17450	0	.	230522134	230523376	0	1	1242	0
chr1	230571359	230574031	H1_polyA+.17477	0	.	230571359	230574031	0	1	2672	0
chr1	230775801	230776802	MIP101.10471	0	.	230775801	230776802	0	1	1001	0
chr1	230776549	230832509	T47D_Burge_Thompson.4510	0	-	230776549	230832509	0	3	42,78,272	0,34730,55688
chr1	230798305	230828836	pHIT000099131	0	+	230798305	230828836	0	4	54,144,216,211	0,3529,4821,30320
chr1	230798305	230829890	pHIT000003590	0	+	230798305	230829890	0	5	54,144,216,211,83	0,3529,4821,30320,31502
chr1	230813118	230814657	REMC_LuminalBreast.16122	0	.	230813118	230814657	0	1	1539	0
chr1	230819396	230820602	REMC_LuminalBreast.16126	0	.	230819396	230820602	0	1	1206	0
chr1	230832047	230832485	MCF7_Burge_Thompson.4940	0	.	230832047	230832485	0	1	438	0
chr1	230832114	230832478	prostate_carcinoma.14741	0	.	230832114	230832478	0	1	364	0
chr1	230832145	230832481	B_Cells_Pritchard.467559	0	.	230832145	230832481	0	1	336	0
chr1	230832158	230832492	adipose_Burge.6161	0	.	230832158	230832492	0	1	334	0
chr1	230832174	230832867	A549_Myers.10740	0	.	230832174	230832867	0	1	693	0
chr1	230832228	230832567	melanoma_Garraway_short_term_cultures.10920	0	.	230832228	230832567	0	1	339	0
chr1	230833348	230834972	REMC_MyoepithelialBreast.14827	0	.	230833348	230834972	0	1	1624	0
chr1	230834387	230834828	liver_polyA+.21020	0	.	230834387	230834828	0	1	441	0
chr1	230841090	230841458	liver_polyA+.21024	0	.	230841090	230841458	0	1	368	0
chr1	230865230	230866289	prostate_carcinoma.14747	0	.	230865230	230866289	0	1	1059	0
chr1	230976102	230976409	A549_Myers.10741	0	.	230976102	230976409	0	1	307	0
chr1	231148519	231148825	B_cells_Cheung.29255	0	.	231148519	231148825	0	1	306	0
chr1	231181954	231182267	NEC_from_H9.12072	0	.	231181954	231182267	0	1	313	0
chr1	231182017	231183497	melanoma_Garraway_short_term_cultures.10924	0	.	231182017	231183497	0	1	1480	0
chr1	231182047	231182348	lymph_node_Burge.8162	0	.	231182047	231182348	0	1	301	0
chr1	231184372	231184755	liver_polyA+.21042	0	.	231184372	231184755	0	1	383	0
chr1	231501124	231504600	H1_polyA+.17483	0	.	231501124	231504600	0	1	3476	0
chr1	231613074	231630117	B_cells_Cheung.29292	0	-	231613074	231630117	0	3	946,126,137	0,12756,16906
chr1	231661897	231662856	B_cells_Cheung.29301	0	.	231661897	231662856	0	1	959	0
chr1	231664255	231665241	B_cells_Cheung.29304	0	.	231664255	231665241	0	1	986	0
chr1	231665742	231667081	B_cells_Cheung.29305	0	.	231665742	231667081	0	1	1339	0
chr1	231809304	231812985	REMC_LuminalBreast.16068	0	.	231809304	231812985	0	1	3681	0
chr1	231814147	231814711	prostate_carcinoma.14789	0	.	231814147	231814711	0	1	564	0
chr1	231814159	231814837	BT474_Burge_Thompson.5012	0	.	231814159	231814837	0	1	678	0
chr1	231814187	231814934	B_cells_Cheung.29317	0	.	231814187	231814934	0	1	747	0
chr1	231814275	231814668	brain_AmbionMAQC.7058	0	.	231814275	231814668	0	1	393	0
chr1	231814487	231814924	B_Cells_Pritchard.469999	0	.	231814487	231814924	0	1	437	0
chr1	231890214	231890708	H9_polyA+.7398	0	.	231890214	231890708	0	1	494	0
chr1	231891358	231895274	REMC_MyoepithelialBreast.14844	0	.	231891358	231895274	0	1	3916	0
chr1	231891501	231894437	REMC_LuminalBreast.16289	0	.	231891501	231894437	0	1	2936	0
chr1	231891533	231892546	BT474_Burge_Thompson.5016	0	.	231891533	231892546	0	1	1013	0
chr1	231915131	231915752	REMC_MyoepithelialBreast.14848	0	.	231915131	231915752	0	1	621	0
chr1	231923152	231926260	REMC_LuminalBreast.16296	0	.	231923152	231926260	0	1	3108	0
chr1	231923579	231926600	REMC_MyoepithelialBreast.14852	0	.	231923579	231926600	0	1	3021	0
chr1	231935955	231942208	REMC_LuminalBreast.16135	0	.	231935955	231942208	0	1	6253	0
chr1	231938804	231942335	REMC_MyoepithelialBreast.14861	0	.	231938804	231942335	0	1	3531	0
chr1	231939999	231940976	REMC_BreastStem.8357	0	.	231939999	231940976	0	1	977	0
chr1	231951064	231951598	REMC_MyoepithelialBreast.14863	0	.	231951064	231951598	0	1	534	0
chr1	232026319	232027287	REMC_MyoepithelialBreast.14867	0	.	232026319	232027287	0	1	968	0
chr1	232528131	232529513	brain_AmbionMAQC.7124	0	.	232528131	232529513	0	1	1382	0
chr1	232528416	232529709	B_cells_Cheung.29418	0	.	232528416	232529709	0	1	1293	0
chr1	232528488	232530645	REMC_MyoepithelialBreast.14964	0	.	232528488	232530645	0	1	2157	0
chr1	232530028	232530498	brain_AmbionMAQC.7125	0	.	232530028	232530498	0	1	470	0
chr1	232566414	232570244	B_cells_Cheung.29728	0	.	232566414	232570244	0	1	3830	0
chr1	232587718	232588616	B_cells_Cheung.29735	0	.	232587718	232588616	0	1	898	0
chr1	232697083	232699587	REMC_LuminalBreast.16271	0	.	232697083	232699587	0	1	2504	0
chr1	232697120	232697883	B_Cells_Pritchard.471797	0	.	232697120	232697883	0	1	763	0
chr1	232730320	232734585	prostate_carcinoma.14851	0	.	232730320	232734585	0	1	4265	0
chr1	232730320	232734585	prostate_carcinoma.14850	0	-	232730320	232734585	0	2	3164,689	0,3576
chr1	232730423	232732039	prostate_normal.9092	0	.	232730423	232732039	0	1	1616	0
chr1	232730460	232732022	brain_AmbionMAQC.7103	0	.	232730460	232732022	0	1	1562	0
chr1	232732943	232735334	REMC_BreastStem.8374	0	.	232732943	232735334	0	1	2391	0
chr1	232733360	232734255	prostate_normal.9093	0	.	232733360	232734255	0	1	895	0
chr1	232733388	232736242	HIT000019870	0	-	232733388	232736242	0	1	2854	0
chr1	232733470	232734361	REMC_LuminalBreast.16274	0	.	232733470	232734361	0	1	891	0
chr1	232733731	232734292	B_Cells_Pritchard.471919	0	.	232733731	232734292	0	1	561	0
chr1	232733883	232734604	REMC_MyoepithelialBreast.15027	0	.	232733883	232734604	0	1	721	0
chr1	232747027	232747915	HepG2_Caltech_ENCODE.5691	0	.	232747027	232747915	0	1	888	0
chr1	232780249	232781844	REMC_MyoepithelialBreast.15033	0	.	232780249	232781844	0	1	1595	0
chr1	232780440	232781471	REMC_LuminalBreast.16276	0	.	232780440	232781471	0	1	1031	0
chr1	232781682	232783313	REMC_LuminalBreast.16277	0	.	232781682	232783313	0	1	1631	0
chr1	232783499	232784556	REMC_MyoepithelialBreast.15035	0	.	232783499	232784556	0	1	1057	0
chr1	232783522	232785006	REMC_LuminalBreast.16278	0	.	232783522	232785006	0	1	1484	0
chr1	232789950	232793820	REMC_LuminalBreast.16281	0	.	232789950	232793820	0	1	3870	0
chr1	232790342	232792344	REMC_MyoepithelialBreast.15041	0	.	232790342	232792344	0	1	2002	0
chr1	232791454	232791946	B_Cells_Pritchard.472131	0	.	232791454	232791946	0	1	492	0
chr1	232791464	232791784	A549_Myers.10867	0	.	232791464	232791784	0	1	320	0
chr1	232792582	232794899	REMC_MyoepithelialBreast.15042	0	.	232792582	232794899	0	1	2317	0
chr1	232796791	232802384	REMC_MyoepithelialBreast.15072	0	.	232796791	232802384	0	1	5593	0
chr1	232797108	232800846	B_Cells_Pritchard.472159	0	.	232797108	232800846	0	1	3738	0
chr1	232801871	232803681	B_Cells_Pritchard.472163	0	.	232801871	232803681	0	1	1810	0
chr1	232802604	232803764	HepG2_Caltech_ENCODE.5692	0	.	232802604	232803764	0	1	1160	0
chr1	232812017	232812572	skeletal_muscle_Burge.4848	0	+	232812017	232812572	0	2	154,264	0,291
chr1	232835298	232837148	B_cells_Cheung.29508	0	.	232835298	232837148	0	1	1850	0
chr1	232842973	232843274	B_cells_Cheung.29513	0	.	232842973	232843274	0	1	301	0
chr1	232848656	232863292	Rinn_00000069	0	+	232848656	232863292	0	4	218,240,127,791	0,8937,9819,13845
chr1	232861348	232862576	HIT000271027	0	-	232861348	232862576	0	1	1228	0
chr1	232862638	232869473	Rinn_00000422	0	+	232862638	232869473	0	3	99,63,774	0,4571,6061
chr1	232862639	232869473	HIT000014790	0	+	232862639	232869473	0	3	98,62,773	0,4571,6061
chr1	232862639	232869473	ENST00000441360	0	+	232862639	232869473	0	3	98,62,773	0,4571,6061
chr1	232863481	232863857	A549_Myers.10870	0	.	232863481	232863857	0	1	376	0
chr1	232867492	232867925	B_cells_Cheung.29521	0	.	232867492	232867925	0	1	433	0
chr1	232871760	232891008	B_cells_Cheung.29524	0	.	232871760	232891008	0	1	19248	0
chr1	232871828	232898748	B_Cells_Pritchard.473431	0	+	232871828	232898748	0	6	8115,1267,2223,3635,1589,1960	0,8994,11145,19304,23233,24960
chr1	232900480	232901366	B_Cells_Pritchard.472599	0	.	232900480	232901366	0	1	886	0
chr1	232900984	232901388	B_cells_Cheung.29526	0	.	232900984	232901388	0	1	404	0
chr1	232910467	232925533	HepG2_Caltech_ENCODE.5706	0	-	232910467	232925533	0	2	1560,10421	0,4645
chr1	232912465	232914164	HepG2_Caltech_ENCODE.5707	0	.	232912465	232914164	0	1	1699	0
chr1	232915286	232916054	liver_polyA+.21147	0	.	232915286	232916054	0	1	768	0
chr1	232916424	232919512	REMC_LuminalBreast.16299	0	.	232916424	232919512	0	1	3088	0
chr1	232917601	232919946	liver_polyA+.21149	0	+	232917601	232919946	0	2	734,1251	0,1094
chr1	232921209	232925631	REMC_LuminalBreast.16300	0	.	232921209	232925631	0	1	4422	0
chr1	232922980	232923308	A549_Myers.10874	0	.	232922980	232923308	0	1	328	0
chr1	232927628	232928749	REMC_MyoepithelialBreast.15046	0	.	232927628	232928749	0	1	1121	0
chr1	232927719	232930363	HepG2_Caltech_ENCODE.5709	0	.	232927719	232930363	0	1	2644	0
chr1	232927813	232928666	CD4_Snyder.11805	0	.	232927813	232928666	0	1	853	0
chr1	232936529	232949985	HepG2_Caltech_ENCODE.5711	0	-	232936529	232949985	0	3	2260,652,752	0,11580,12704
chr1	232936733	232937286	B_Cells_Pritchard.472717	0	.	232936733	232937286	0	1	553	0
chr1	232942626	232971227	HepG2_Caltech_ENCODE.5714	0	-	232942626	232971227	0	3	47,2425,222	0,10354,28379
chr1	232951849	232955470	HepG2_Caltech_ENCODE.5715	0	.	232951849	232955470	0	1	3621	0
chr1	232954505	232955048	B_cells_Cheung.29533	0	.	232954505	232955048	0	1	543	0
chr1	232957033	232958529	HepG2_Caltech_ENCODE.5722	0	.	232957033	232958529	0	1	1496	0
chr1	232957880	232958331	B_cells_Cheung.29536	0	.	232957880	232958331	0	1	451	0
chr1	232959972	232962426	HIT000073310	0	-	232959972	232962426	0	1	2454	0
chr1	232961386	232963652	HepG2_Caltech_ENCODE.5724	0	.	232961386	232963652	0	1	2266	0
chr1	232961672	232962222	XR_078886	0	-	232961672	232962222	0	1	550	0
chr1	232962047	232962835	B_cells_Cheung.29539	0	.	232962047	232962835	0	1	788	0
chr1	232967529	232970819	B_cells_Cheung.29545	0	.	232967529	232970819	0	1	3290	0
chr1	232967539	232970233	HepG2_Caltech_ENCODE.5727	0	.	232967539	232970233	0	1	2694	0
chr1	232971368	232976162	B_Cells_Pritchard.472853	0	-	232971368	232976162	0	2	1546,421	0,4373
chr1	232978495	232980122	H1_polyA+.17584	0	.	232978495	232980122	0	1	1627	0
chr1	232978779	232979394	B_Cells_Pritchard.472875	0	.	232978779	232979394	0	1	615	0
chr1	232980878	232981248	BT474_Burge_Thompson.5055	0	.	232980878	232981248	0	1	370	0
chr1	232981351	232981980	H1_polyA+.17586	0	.	232981351	232981980	0	1	629	0
chr1	232981400	232981934	B_Cells_Pritchard.472889	0	.	232981400	232981934	0	1	534	0
chr1	232982467	232983543	BT474_Burge_Thompson.5054	0	.	232982467	232983543	0	1	1076	0
chr1	233023119	233023522	A549_Myers.10882	0	.	233023119	233023522	0	1	403	0
chr1	233027252	233029216	HepG2_Caltech_ENCODE.5731	0	.	233027252	233029216	0	1	1964	0
chr1	233029443	233030321	HepG2_Caltech_ENCODE.5732	0	.	233029443	233030321	0	1	878	0
chr1	233032563	233033750	MIP101.10559	0	.	233032563	233033750	0	1	1187	0
chr1	233042954	233046173	B_Cells_Pritchard.473021	0	.	233042954	233046173	0	1	3219	0
chr1	233043661	233046188	B_cells_Cheung.29555	0	.	233043661	233046188	0	1	2527	0
chr1	233051815	233052300	B_Cells_Pritchard.473037	0	.	233051815	233052300	0	1	485	0
chr1	233051925	233056155	B_cells_Cheung.29560	0	+	233051925	233056155	0	2	127,2309	0,1921
chr1	233053607	233056155	B_cells_Cheung.29561	0	.	233053607	233056155	0	1	2548	0
chr1	233053799	233056094	B_Cells_Pritchard.473045	0	.	233053799	233056094	0	1	2295	0
chr1	233056235	233059332	B_Cells_Pritchard.473047	0	.	233056235	233059332	0	1	3097	0
chr1	233056240	233059346	B_cells_Cheung.29563	0	.	233056240	233059346	0	1	3106	0
chr1	233060516	233061582	B_cells_Cheung.29564	0	.	233060516	233061582	0	1	1066	0
chr1	233065274	233065602	A549_Myers.10884	0	.	233065274	233065602	0	1	328	0
chr1	233068781	233069211	B_cells_Cheung.29570	0	.	233068781	233069211	0	1	430	0
chr1	233071216	233071858	B_cells_Cheung.29573	0	.	233071216	233071858	0	1	642	0
chr1	233071741	233072552	B_Cells_Pritchard.473099	0	.	233071741	233072552	0	1	811	0
chr1	233073748	233074111	A549_Myers.10886	0	.	233073748	233074111	0	1	363	0
chr1	233076592	233079247	HepG2_Caltech_ENCODE.5740	0	.	233076592	233079247	0	1	2655	0
chr1	233078108	233078478	B_Cells_Pritchard.473133	0	.	233078108	233078478	0	1	370	0
chr1	233093304	233093611	A549_Myers.10888	0	.	233093304	233093611	0	1	307	0
chr1	233101028	233102054	HepG2_Caltech_ENCODE.5746	0	.	233101028	233102054	0	1	1026	0
chr1	233102114	233102737	HepG2_Caltech_ENCODE.5747	0	.	233102114	233102737	0	1	623	0
chr1	233103732	233104486	HepG2_Caltech_ENCODE.5749	0	.	233103732	233104486	0	1	754	0
chr1	233110975	233111415	A549_Myers.10889	0	.	233110975	233111415	0	1	440	0
chr1	233128581	233130544	B_Cells_Pritchard.473337	0	+	233128581	233130544	0	1	1963	0
chr1	233128631	233130512	B_cells_Cheung.29578	0	+	233128631	233130512	0	2	523,971	0,910
chr1	233128631	233130512	B_cells_Cheung.29579	0	.	233128631	233130512	0	1	1881	0
chr1	233130919	233131453	B_cells_Cheung.29580	0	.	233130919	233131453	0	1	534	0
chr1	233133586	233134444	B_Cells_Pritchard.473351	0	.	233133586	233134444	0	1	858	0
chr1	233135283	233135782	B_Cells_Pritchard.473357	0	.	233135283	233135782	0	1	499	0
chr1	233154326	233193073	REMC_LuminalBreast.16304	0	-	233154326	233193073	0	3	7960,3201,691	0,9460,38056
chr1	233155639	233161370	HepG2_Caltech_ENCODE.5751	0	.	233155639	233161370	0	1	5731	0
chr1	233157107	233157855	liver_polyA+.21167	0	.	233157107	233157855	0	1	748	0
chr1	233157374	233157770	A549_Myers.10893	0	.	233157374	233157770	0	1	396	0
chr1	233159713	233166369	Rinn_00000118	0	-	233159713	233166369	0	4	178,401,77,234	0,334,2496,6422
chr1	233160273	233162189	pHIT000099145	0	+	233160273	233162189	0	2	186,123	0,1793
chr1	233160667	233160987	liver_polyA+.21170	0	.	233160667	233160987	0	1	320	0
chr1	233161370	233162691	HepG2_Caltech_ENCODE.5752	0	.	233161370	233162691	0	1	1321	0
chr1	233161386	233161863	A549_Myers.10897	0	.	233161386	233161863	0	1	477	0
chr1	233161742	233162406	BT474_Burge_Thompson.5061	0	.	233161742	233162406	0	1	664	0
chr1	233162987	233164555	MIP101.10563	0	.	233162987	233164555	0	1	1568	0
chr1	233163472	233164579	BT474_Burge_Thompson.5062	0	.	233163472	233164579	0	1	1107	0
chr1	233163680	233164758	prostate_normal.9100	0	.	233163680	233164758	0	1	1078	0
chr1	233163992	233164530	A549_Myers.10900	0	.	233163992	233164530	0	1	538	0
chr1	233165726	233166878	HepG2_Caltech_ENCODE.5756	0	.	233165726	233166878	0	1	1152	0
chr1	233169458	233171117	B_Cells_Pritchard.473471	0	-	233169458	233171117	0	2	412,360	0,1299
chr1	233176949	233183896	B_Cells_Pritchard.473633	0	-	233176949	233183896	0	2	6062,871	0,6076
chr1	233177020	233183169	REMC_LuminalBreast.16307	0	.	233177020	233183169	0	1	6149	0
chr1	233177142	233183950	B_cells_Cheung.29602	0	-	233177142	233183950	0	2	5571,925	0,5883
chr1	233177142	233183950	B_cells_Cheung.29600	0	.	233177142	233183950	0	1	6808	0
chr1	233179014	233179848	prostate_carcinoma.14867	0	.	233179014	233179848	0	1	834	0
chr1	233188248	233188673	B_cells_Cheung.29608	0	.	233188248	233188673	0	1	425	0
chr1	233189866	233190215	B_cells_Cheung.29609	0	.	233189866	233190215	0	1	349	0
chr1	233192094	233193453	B_cells_Cheung.29610	0	.	233192094	233193453	0	1	1359	0
chr1	233192255	233193507	B_Cells_Pritchard.473539	0	.	233192255	233193507	0	1	1252	0
chr1	233199571	233200009	A549_Myers.10907	0	.	233199571	233200009	0	1	438	0
chr1	233213619	233216294	B_Cells_Pritchard.473647	0	.	233213619	233216294	0	1	2675	0
chr1	233214228	233216360	B_cells_Cheung.29618	0	.	233214228	233216360	0	1	2132	0
chr1	233214586	233215771	CD4_Plagnol_activated.10676	0	.	233214586	233215771	0	1	1185	0
chr1	233215097	233215958	REMC_MyoepithelialBreast.15052	0	.	233215097	233215958	0	1	861	0
chr1	233237539	233237910	B_Cells_Pritchard.473715	0	.	233237539	233237910	0	1	371	0
chr1	233247702	233248166	A549_Myers.10912	0	.	233247702	233248166	0	1	464	0
chr1	233249649	233258050	B_Cells_Pritchard.473847	0	+	233249649	233258050	0	3	1455,2016,2210	0,3925,6191
chr1	233249649	233258050	B_Cells_Pritchard.473849	0	-	233249649	233258050	0	5	1306,658,1218,687,1521	0,3925,4723,6191,6880
chr1	233249949	233251397	B_cells_Cheung.29631	0	.	233249949	233251397	0	1	1448	0
chr1	233251448	233252550	B_Cells_Pritchard.473851	0	+	233251448	233252550	0	1	1102	0
chr1	233251466	233252328	B_cells_Cheung.29632	0	.	233251466	233252328	0	1	862	0
chr1	233253603	233258079	HepG2_Caltech_ENCODE.5758	0	.	233253603	233258079	0	1	4476	0
chr1	233253638	233258006	liver_polyA+.21184	0	-	233253638	233258006	0	3	12,1272,2188	0,691,2180
chr1	233253678	233258833	REMC_LuminalBreast.16313	0	.	233253678	233258833	0	1	5155	0
chr1	233253772	233255752	BT474_Burge_Thompson.5064	0	.	233253772	233255752	0	1	1980	0
chr1	233253777	233257909	REMC_MyoepithelialBreast.15053	0	.	233253777	233257909	0	1	4132	0
chr1	233253816	233255596	ZR751_Thompson.4189	0	.	233253816	233255596	0	1	1780	0
chr1	233255701	233258056	ZR751_Thompson.4190	0	.	233255701	233258056	0	1	2355	0
chr1	233255806	233258015	BT474_Burge_Thompson.5065	0	.	233255806	233258015	0	1	2209	0
chr1	233255806	233257914	MDAMB468_Thompson.4271	0	.	233255806	233257914	0	1	2108	0
chr1	233255829	233257961	kidney_Gilad.13926	0	-	233255829	233257961	0	2	637,925	0,1207
chr1	233255853	233257995	B_cells_Cheung.29637	0	.	233255853	233257995	0	1	2142	0
chr1	233256464	233257870	REMC_BreastStem.8379	0	.	233256464	233257870	0	1	1406	0
chr1	233256615	233258012	prostate_carcinoma.14871	0	.	233256615	233258012	0	1	1397	0
chr1	233256684	233257961	kidney_Gilad.13927	0	.	233256684	233257961	0	1	1277	0
chr1	233256753	233257895	MCF7_Burge_Thompson.4977	0	.	233256753	233257895	0	1	1142	0
chr1	233256996	233257900	MIP101.10565	0	.	233256996	233257900	0	1	904	0
chr1	233308838	233311728	REMC_LuminalBreast.16314	0	.	233308838	233311728	0	1	2890	0
chr1	233308865	233310421	B_Cells_Pritchard.473769	0	.	233308865	233310421	0	1	1556	0
chr1	233308965	233310102	B_cells_Cheung.29638	0	.	233308965	233310102	0	1	1137	0
chr1	233309470	233314015	pHIT000070602	0	+	233309470	233314015	0	2	294,285	0,4260
chr1	233309470	233319753	pHIT000070320	0	+	233309470	233319753	0	3	294,285,276	0,4260,10007
chr1	233309533	233309851	A549_Myers.10918	0	.	233309533	233309851	0	1	318	0
chr1	233312287	233314091	REMC_LuminalBreast.16315	0	.	233312287	233314091	0	1	1804	0
chr1	233313730	233319753	pHIT000003613	0	+	233313730	233319753	0	2	285,276	0,5747
chr1	233320229	233320687	A549_Myers.10920	0	.	233320229	233320687	0	1	458	0
chr1	233320229	233321212	REMC_LuminalBreast.16318	0	.	233320229	233321212	0	1	983	0
chr1	233323700	233325148	REMC_LuminalBreast.16320	0	.	233323700	233325148	0	1	1448	0
chr1	233329675	233331260	REMC_LuminalBreast.16323	0	.	233329675	233331260	0	1	1585	0
chr1	233330178	233331096	REMC_MyoepithelialBreast.15061	0	.	233330178	233331096	0	1	918	0
chr1	233333729	233336617	B_Cells_Pritchard.473843	0	+	233333729	233336617	0	2	1064,1145	0,1743
chr1	233585524	233585913	B_cells_Cheung.29782	0	.	233585524	233585913	0	1	389	0
chr1	233585544	233589346	REMC_MyoepithelialBreast.15087	0	.	233585544	233589346	0	1	3802	0
chr1	233587383	233590674	B_Cells_Pritchard.475663	0	-	233587383	233590674	0	2	806,412	0,2879
chr1	233735625	233736413	REMC_BreastStem.8397	0	.	233735625	233736413	0	1	788	0
chr1	233735628	233737650	REMC_LuminalBreast.16373	0	.	233735628	233737650	0	1	2022	0
chr1	233735995	233737607	REMC_MyoepithelialBreast.15112	0	.	233735995	233737607	0	1	1612	0
chr1	233736923	233737806	H1_polyA+.17754	0	.	233736923	233737806	0	1	883	0
chr1	233761180	233762487	H1_polyA+.17757	0	.	233761180	233762487	0	1	1307	0
chr1	233774693	233775785	H1_polyA+.17762	0	.	233774693	233775785	0	1	1092	0
chr1	233886190	233888800	REMC_BreastStem.8412	0	.	233886190	233888800	0	1	2610	0
chr1	233886940	233888662	melanoma_Garraway_short_term_cultures.11088	0	.	233886940	233888662	0	1	1722	0
chr1	233887495	233888472	REMC_MyoepithelialBreast.15284	0	.	233887495	233888472	0	1	977	0
chr1	234137119	234138112	liver_polyA+.21373	0	.	234137119	234138112	0	1	993	0
chr1	234138532	234139571	liver_polyA+.21374	0	.	234138532	234139571	0	1	1039	0
chr1	234138929	234139568	REMC_BreastStem.8430	0	.	234138929	234139568	0	1	639	0
chr1	234139005	234139552	REMC_LuminalBreast.16413	0	.	234139005	234139552	0	1	547	0
chr1	234152401	234154564	liver_polyA+.21383	0	.	234152401	234154564	0	1	2163	0
chr1	234165808	234168004	REMC_LuminalBreast.16424	0	.	234165808	234168004	0	1	2196	0
chr1	234166805	234167481	REMC_BreastStem.8438	0	.	234166805	234167481	0	1	676	0
chr1	234167052	234167870	liver_polyA+.21396	0	.	234167052	234167870	0	1	818	0
chr1	234170132	234171065	REMC_MyoepithelialBreast.15232	0	.	234170132	234171065	0	1	933	0
chr1	234171073	234172116	REMC_LuminalBreast.16426	0	.	234171073	234172116	0	1	1043	0
chr1	234171262	234171898	liver_polyA+.21400	0	.	234171262	234171898	0	1	636	0
chr1	234172393	234173916	REMC_MyoepithelialBreast.15233	0	.	234172393	234173916	0	1	1523	0
chr1	234172517	234175266	melanoma_Garraway_short_term_cultures.11171	0	.	234172517	234175266	0	1	2749	0
chr1	234173491	234175337	liver_polyA+.21403	0	.	234173491	234175337	0	1	1846	0
chr1	234173507	234175280	REMC_LuminalBreast.16414	0	.	234173507	234175280	0	1	1773	0
chr1	234175760	234176914	liver_polyA+.21364	0	.	234175760	234176914	0	1	1154	0
chr1	234175949	234176853	REMC_MyoepithelialBreast.15234	0	.	234175949	234176853	0	1	904	0
chr1	234175971	234177371	REMC_LuminalBreast.16428	0	.	234175971	234177371	0	1	1400	0
chr1	234179085	234180648	REMC_LuminalBreast.16430	0	.	234179085	234180648	0	1	1563	0
chr1	234182483	234183165	REMC_MyoepithelialBreast.15237	0	.	234182483	234183165	0	1	682	0
chr1	234185938	234186712	melanoma_Garraway_short_term_cultures.11182	0	.	234185938	234186712	0	1	774	0
chr1	234191766	234192591	REMC_BreastStem.8443	0	.	234191766	234192591	0	1	825	0
chr1	234191821	234192598	REMC_LuminalBreast.16432	0	.	234191821	234192598	0	1	777	0
chr1	234192084	234193300	REMC_MyoepithelialBreast.15239	0	.	234192084	234193300	0	1	1216	0
chr1	234192989	234194044	kidney_Gilad.14105	0	+	234192989	234194044	0	3	107,74,311	0,328,744
chr1	234193515	234196099	REMC_LuminalBreast.16434	0	.	234193515	234196099	0	1	2584	0
chr1	234195148	234196047	REMC_MyoepithelialBreast.15242	0	.	234195148	234196047	0	1	899	0
chr1	234195189	234195754	melanoma_Garraway_short_term_cultures.11187	0	.	234195189	234195754	0	1	565	0
chr1	234196166	234196839	REMC_MyoepithelialBreast.15243	0	.	234196166	234196839	0	1	673	0
chr1	234196222	234200256	REMC_LuminalBreast.16435	0	.	234196222	234200256	0	1	4034	0
chr1	234196892	234197667	REMC_MyoepithelialBreast.15244	0	.	234196892	234197667	0	1	775	0
chr1	234200385	234201873	REMC_LuminalBreast.16436	0	.	234200385	234201873	0	1	1488	0
chr1	234200504	234203040	REMC_MyoepithelialBreast.15247	0	.	234200504	234203040	0	1	2536	0
chr1	234200571	234201726	kidney_Gilad.14114	0	.	234200571	234201726	0	1	1155	0
chr1	234200776	234203043	REMC_BreastStem.8444	0	.	234200776	234203043	0	1	2267	0
chr1	234201106	234202696	melanoma_Garraway_short_term_cultures.11191	0	.	234201106	234202696	0	1	1590	0
chr1	234201166	234201644	MCF10A_Thompson.3743	0	.	234201166	234201644	0	1	478	0
chr1	234315510	234316160	BT474_Burge_Thompson.5088	0	.	234315510	234316160	0	1	650	0
chr1	234321754	234322552	B_cells_Cheung.29944	0	.	234321754	234322552	0	1	798	0
chr1	234328212	234328889	B_cells_Cheung.29949	0	.	234328212	234328889	0	1	677	0
chr1	234331104	234331692	BT474_Burge_Thompson.5089	0	.	234331104	234331692	0	1	588	0
chr1	234331216	234332011	B_cells_Cheung.29951	0	.	234331216	234332011	0	1	795	0
chr1	234331781	234332174	BT474_Burge_Thompson.5090	0	.	234331781	234332174	0	1	393	0
chr1	234333712	234334107	B_cells_Cheung.29952	0	.	234333712	234334107	0	1	395	0
chr1	234356870	234357225	B_cells_Cheung.29959	0	.	234356870	234357225	0	1	355	0
chr1	234715696	234717330	REMC_LuminalBreast.16466	0	.	234715696	234717330	0	1	1634	0
chr1	234715764	234717297	H1_polyA+.17995	0	.	234715764	234717297	0	1	1533	0
chr1	234716793	234717361	B_cells_Cheung.31647	0	.	234716793	234717361	0	1	568	0
chr1	234716963	234717377	CD4_Plagnol_activated.10818	0	.	234716963	234717377	0	1	414	0
chr1	234717536	234718377	H1_polyA+.17996	0	.	234717536	234718377	0	1	841	0
chr1	234719457	234722649	REMC_MyoepithelialBreast.15280	0	.	234719457	234722649	0	1	3192	0
chr1	234719457	234725929	REMC_MyoepithelialBreast.15279	0	+	234719457	234725929	0	2	2621,126	0,6346
chr1	234719492	234720345	H1_polyA+.17998	0	.	234719492	234720345	0	1	853	0
chr1	234719666	234721078	REMC_LuminalBreast.16468	0	.	234719666	234721078	0	1	1412	0
chr1	234720401	234722835	H1_polyA+.17999	0	.	234720401	234722835	0	1	2434	0
chr1	234720448	234722149	CD4_Plagnol_activated.10819	0	.	234720448	234722149	0	1	1701	0
chr1	234720843	234722211	MCF10A_Thompson.3749	0	.	234720843	234722211	0	1	1368	0
chr1	234721296	234722253	REMC_LuminalBreast.16469	0	.	234721296	234722253	0	1	957	0
chr1	234721475	234722127	K562.8041	0	.	234721475	234722127	0	1	652	0
chr1	234723963	234724443	BT474_Burge_Thompson.5105	0	.	234723963	234724443	0	1	480	0
chr1	234723975	234724681	H1_polyA+.18000	0	.	234723975	234724681	0	1	706	0
chr1	234727216	234727932	B_cells_Cheung.30012	0	.	234727216	234727932	0	1	716	0
chr1	234732109	234733517	B_cells_Cheung.30014	0	.	234732109	234733517	0	1	1408	0
chr1	235141006	235142885	REMC_LuminalBreast.16507	0	.	235141006	235142885	0	1	1879	0
chr1	235145061	235147470	B_cells_Cheung.30134	0	.	235145061	235147470	0	1	2409	0
chr1	235149877	235151040	prostate_carcinoma.15094	0	.	235149877	235151040	0	1	1163	0
chr1	235149877	235152035	B_Cells_Pritchard.479825	0	+	235149877	235152035	0	1	2158	0
chr1	235149914	235151195	B_cells_Cheung.30138	0	.	235149914	235151195	0	1	1281	0
chr1	235150359	235151479	REMC_LuminalBreast.16510	0	.	235150359	235151479	0	1	1120	0
chr1	235150519	235151051	prostate_normal.9272	0	.	235150519	235151051	0	1	532	0
chr1	235151268	235152101	B_cells_Cheung.30139	0	.	235151268	235152101	0	1	833	0
chr1	235177930	235179200	REMC_MyoepithelialBreast.15349	0	.	235177930	235179200	0	1	1270	0
chr1	236301852	236302448	B_cells_Cheung.30159	0	.	236301852	236302448	0	1	596	0
chr1	236321037	236321495	B_cells_Cheung.30171	0	.	236321037	236321495	0	1	458	0
chr1	236357066	236357557	B_cells_Cheung.30200	0	.	236357066	236357557	0	1	491	0
chr1	236365485	236367660	B_cells_Cheung.30210	0	.	236365485	236367660	0	1	2175	0
chr1	236367755	236371890	B_cells_Cheung.30211	0	.	236367755	236371890	0	1	4135	0
chr1	236418436	236418781	B_cells_Cheung.30222	0	.	236418436	236418781	0	1	345	0
chr1	236443890	236444713	B_cells_Cheung.30235	0	.	236443890	236444713	0	1	823	0
chr1	236470751	236471937	B_cells_Cheung.30247	0	.	236470751	236471937	0	1	1186	0
chr1	236496826	236497329	B_cells_Cheung.30263	0	.	236496826	236497329	0	1	503	0
chr1	236524470	236524815	B_cells_Cheung.30274	0	.	236524470	236524815	0	1	345	0
chr1	236564544	236565346	B_cells_Cheung.30289	0	.	236564544	236565346	0	1	802	0
chr1	236577818	236578698	B_cells_Cheung.30298	0	.	236577818	236578698	0	1	880	0
chr1	236601774	236602951	B_cells_Cheung.30308	0	.	236601774	236602951	0	1	1177	0
chr1	236607221	236608489	B_cells_Cheung.30310	0	.	236607221	236608489	0	1	1268	0
chr1	236631548	236632083	B_cells_Cheung.30324	0	.	236631548	236632083	0	1	535	0
chr1	236662929	236664530	B_cells_Cheung.30335	0	.	236662929	236664530	0	1	1601	0
chr1	237314785	237315162	B_Cells_Pritchard.482681	0	.	237314785	237315162	0	1	377	0
chr1	238145360	238146878	Rinn_00000770	0	-	238145360	238146878	0	2	393,52	0,1466
chr1	238182886	238183196	A549_Myers.11098	0	.	238182886	238183196	0	1	310	0
chr1	238227765	238228299	A549_Myers.11102	0	.	238227765	238228299	0	1	534	0
chr1	238714852	238716141	prostate_carcinoma.15233	0	.	238714852	238716141	0	1	1289	0
chr1	238714861	238715930	melanoma_Garraway_short_term_cultures.11329	0	.	238714861	238715930	0	1	1069	0
chr1	239653665	239654935	brain_AmbionMAQC.7272	0	.	239653665	239654935	0	1	1270	0
chr1	239653750	239654765	B_Cells_Pritchard.487653	0	.	239653750	239654765	0	1	1015	0
chr1	239653770	239654663	A549_Myers.11127	0	.	239653770	239654663	0	1	893	0
chr1	239653773	239654886	H1_polyA+.18179	0	.	239653773	239654886	0	1	1113	0
chr1	239653947	239654607	B_cells_Cheung.30387	0	.	239653947	239654607	0	1	660	0
chr1	239654214	239663251	ENST00000444330	0	+	239654214	239663251	0	3	258,89,157	0,334,8880
chr1	239660681	239661239	brain_AmbionMAQC.7275	0	.	239660681	239661239	0	1	558	0
chr1	239679998	239680453	brain_AmbionMAQC.7276	0	.	239679998	239680453	0	1	455	0
chr1	239692529	239694050	brain_AmbionMAQC.7286	0	+	239692529	239694050	0	2	27,700	0,821
chr1	239696636	239697461	brain_AmbionMAQC.7294	0	.	239696636	239697461	0	1	825	0
chr1	239712844	239713671	REMC_LuminalBreast.16523	0	.	239712844	239713671	0	1	827	0
chr1	239713181	239713618	B_Cells_Pritchard.487785	0	.	239713181	239713618	0	1	437	0
chr1	239716510	239723369	REMC_LuminalBreast.16525	0	.	239716510	239723369	0	1	6859	0
chr1	239723585	239725069	REMC_BreastStem.8504	0	.	239723585	239725069	0	1	1484	0
chr1	239724373	239725557	liver_polyA+.21710	0	.	239724373	239725557	0	1	1184	0
chr1	240047369	240048087	K562.7883	0	.	240047369	240048087	0	1	718	0
chr1	240139527	240140130	B_cells_Cheung.30463	0	.	240139527	240140130	0	1	603	0
chr1	240147138	240147891	melanoma_Garraway_short_term_cultures.11357	0	.	240147138	240147891	0	1	753	0
chr1	240147400	240147754	A549_Myers.11150	0	.	240147400	240147754	0	1	354	0
chr1	240153905	240154550	B_cells_Cheung.30481	0	.	240153905	240154550	0	1	645	0
chr1	240154021	240156535	H1_polyA+.18214	0	.	240154021	240156535	0	1	2514	0
chr1	240154107	240154715	BT474_Burge_Thompson.5169	0	.	240154107	240154715	0	1	608	0
chr1	240155187	240156573	MIP101.10762	0	.	240155187	240156573	0	1	1386	0
chr1	240155904	240156735	BT474_Burge_Thompson.5179	0	.	240155904	240156735	0	1	831	0
chr1	240155914	240156482	B_cells_Cheung.30483	0	.	240155914	240156482	0	1	568	0
chr1	240155934	240156474	H9_polyA+.7617	0	.	240155934	240156474	0	1	540	0
chr1	240155954	240156740	MDAMB468_Thompson.4334	0	.	240155954	240156740	0	1	786	0
chr1	240156063	240156488	HeLa_polyA+_Chen.5906	0	.	240156063	240156488	0	1	425	0
chr1	240768375	240810256	pHIT000003656	0	-	240768375	240810256	0	4	148,97,57,85	0,5574,39261,41796
chr1	240950046	240950688	MCF10A_Thompson.3808	0	.	240950046	240950688	0	1	642	0
chr1	241277661	241282177	ENST00000437691	0	-	241277661	241282177	0	2	139,207	0,4309
chr1	241321315	241322515	ENST00000415989	0	-	241321315	241322515	0	2	206,112	0,1088
chr1	242147044	242147650	B_Cells_Pritchard.493443	0	.	242147044	242147650	0	1	606	0
chr1	242147135	242147487	brain_AmbionMAQC.7328	0	.	242147135	242147487	0	1	352	0
chr1	242147325	242277240	Rinn_00000011	0	+	242147325	242277240	0	12	126,111,119,102,73,225,105,200,130,128,65,425	0,61008,85981,87656,92619,93295,107564,109834,124025,126021,127826,129490
chr1	242147326	242277334	HIT000098389	0	+	242147326	242277334	0	12	125,110,118,101,72,224,104,199,129,127,64,518	0,61008,85981,87656,92619,93295,107564,109834,124025,126021,127826,129490
chr1	242147326	242277242	ENST00000440494	0	+	242147326	242277242	0	12	125,110,118,101,72,224,104,199,129,127,64,426	0,61008,85981,87656,92619,93295,107564,109834,124025,126021,127826,129490
chr1	242147326	242277242	NR_033883	0	+	242147326	242277242	0	12	125,110,118,101,72,224,104,199,129,127,64,426	0,61008,85981,87656,92619,93295,107564,109834,124025,126021,127826,129490
chr1	242277086	242278144	CD4_Snyder.12440	0	.	242277086	242278144	0	1	1058	0
chr1	242277147	242278633	Rinn_00001898	0	-	242277147	242278633	0	2	60,1276	0,210
chr1	242277288	242278142	REMC_MyoepithelialBreast.15456	0	.	242277288	242278142	0	1	854	0
chr1	242277554	242278171	prostate_carcinoma.15398	0	.	242277554	242278171	0	1	617	0
chr1	242278149	242278539	lymph_node_Burge.8318	0	.	242278149	242278539	0	1	390	0
chr1	242278377	242278683	CD4_Snyder.12442	0	.	242278377	242278683	0	1	306	0
chr1	242278601	242278937	adipose_Burge.6302	0	.	242278601	242278937	0	1	336	0
chr1	242278636	242278958	testes_Burge.8825	0	.	242278636	242278958	0	1	322	0
chr1	242278646	242278976	breast_Burge.6521	0	.	242278646	242278976	0	1	330	0
chr1	242279071	242279711	lymph_node_Burge.8321	0	.	242279071	242279711	0	1	640	0
chr1	242294253	242295027	XR_040549	0	+	242294253	242295027	0	1	774	0
chr1	242294254	242297834	HIT000044487	0	+	242294254	242297834	0	1	3580	0
chr1	242312296	242315341	REMC_LuminalBreast.16586	0	.	242312296	242315341	0	1	3045	0
chr1	242312469	242313326	BT474_Burge_Thompson.5195	0	.	242312469	242313326	0	1	857	0
chr1	242312905	242313315	ZR751_Thompson.4286	0	.	242312905	242313315	0	1	410	0
chr1	242337288	242338936	Rinn_00000428	0	+	242337288	242338936	0	2	232,337	0,1311
chr1	242337289	242338936	ENST00000440148	0	+	242337289	242338936	0	2	231,336	0,1311
chr1	242414694	242415145	brain_AmbionMAQC.7336	0	.	242414694	242415145	0	1	451	0
chr1	242455054	242462235	B_Cells_Pritchard.494401	0	-	242455054	242462235	0	1	7181	0
chr1	242456256	242457120	B_cells_Cheung.30597	0	.	242456256	242457120	0	1	864	0
chr1	242457187	242462213	B_cells_Cheung.30598	0	.	242457187	242462213	0	1	5026	0
chr1	242459694	242468585	Rinn_00001899	0	-	242459694	242468585	0	2	2506,37	0,8854
chr1	242459902	242460775	REMC_LuminalBreast.16589	0	.	242459902	242460775	0	1	873	0
chr1	242488437	242489369	prostate_carcinoma.15404	0	.	242488437	242489369	0	1	932	0
chr1	242495633	242496120	A549_Myers.11235	0	.	242495633	242496120	0	1	487	0
chr1	242495709	242496071	B_Cells_Pritchard.494471	0	-	242495709	242496071	0	1	362	0
chr1	242520943	242522176	B_Cells_Pritchard.494527	0	.	242520943	242522176	0	1	1233	0
chr1	242521194	242522380	B_cells_Cheung.30612	0	.	242521194	242522380	0	1	1186	0
chr1	242524122	242525776	B_Cells_Pritchard.494537	0	.	242524122	242525776	0	1	1654	0
chr1	242529092	242529805	B_cells_Cheung.30617	0	.	242529092	242529805	0	1	713	0
chr1	242532764	242555116	B_Cells_Pritchard.494729	0	-	242532764	242555116	0	7	1964,3161,2066,320,3529,577,97	0,3969,7671,9797,11575,16459,22255
chr1	242533007	242536105	B_cells_Cheung.30620	0	.	242533007	242536105	0	1	3098	0
chr1	242537614	242538132	CD4_Plagnol_activated.10944	0	.	242537614	242538132	0	1	518	0
chr1	242543051	242547731	B_cells_Cheung.30623	0	.	242543051	242547731	0	1	4680	0
chr1	242543336	242544154	B_Cells_Pritchard.494769	0	-	242543336	242544154	0	1	818	0
chr1	242553912	242554341	B_cells_Cheung.30631	0	.	242553912	242554341	0	1	429	0
chr1	242562435	242563715	REMC_LuminalBreast.16593	0	.	242562435	242563715	0	1	1280	0
chr1	242564659	242565803	REMC_LuminalBreast.16594	0	.	242564659	242565803	0	1	1144	0
chr1	242580298	242581121	REMC_BreastStem.8538	0	.	242580298	242581121	0	1	823	0
chr1	242621357	242622825	H1_polyA+.18389	0	.	242621357	242622825	0	1	1468	0
chr1	242621372	242623242	B_cells_Cheung.30635	0	.	242621372	242623242	0	1	1870	0
chr1	242621386	242622589	melanoma_Garraway_short_term_cultures.11476	0	.	242621386	242622589	0	1	1203	0
chr1	242621386	242621931	MIP101.10826	0	.	242621386	242621931	0	1	545	0
chr1	242621526	242622263	prostate_carcinoma.15410	0	.	242621526	242622263	0	1	737	0
chr1	242623497	242624853	MIP101.10828	0	.	242623497	242624853	0	1	1356	0
chr1	242636439	242637061	HeLa_polyA+_Chen.5928	0	.	242636439	242637061	0	1	622	0
chr1	242959633	242960652	H1_polyA+.18469	0	.	242959633	242960652	0	1	1019	0
chr1	242960083	242961391	testes_Burge.8847	0	.	242960083	242961391	0	1	1308	0
chr1	243018724	243019234	A549_Myers.11258	0	.	243018724	243019234	0	1	510	0
chr1	243019182	243020969	REMC_LuminalBreast.16647	0	.	243019182	243020969	0	1	1787	0
chr1	243030686	243031599	REMC_LuminalBreast.16770	0	.	243030686	243031599	0	1	913	0
chr1	243032111	243035202	REMC_LuminalBreast.16771	0	.	243032111	243035202	0	1	3091	0
chr1	243035647	243038272	REMC_LuminalBreast.16772	0	.	243035647	243038272	0	1	2625	0
chr1	243037005	243037501	REMC_MyoepithelialBreast.15533	0	.	243037005	243037501	0	1	496	0
chr1	243039440	243042237	REMC_MyoepithelialBreast.15534	0	.	243039440	243042237	0	1	2797	0
chr1	243039530	243040517	REMC_BreastStem.8583	0	.	243039530	243040517	0	1	987	0
chr1	243049060	243049688	H1_polyA+.19505	0	.	243049060	243049688	0	1	628	0
chr1	243049835	243054460	H1_polyA+.19506	0	.	243049835	243054460	0	1	4625	0
chr1	243057268	243058261	H1_polyA+.19509	0	.	243057268	243058261	0	1	993	0
chr1	243057348	243058234	HepG2_Caltech_ENCODE.7196	0	.	243057348	243058234	0	1	886	0
chr1	243057442	243058245	B_cells_Cheung.30723	0	.	243057442	243058245	0	1	803	0
chr1	243058254	243058765	melanoma_Garraway_short_term_cultures.11521	0	.	243058254	243058765	0	1	511	0
chr1	243058410	243059793	B_cells_Cheung.30724	0	.	243058410	243059793	0	1	1383	0
chr1	243111609	243111978	A549_Myers.11261	0	.	243111609	243111978	0	1	369	0
chr1	243198141	243198690	brain_AmbionMAQC.7357	0	.	243198141	243198690	0	1	549	0
chr1	243198285	243198741	HeLa_polyA+_Chen.5956	0	.	243198285	243198741	0	1	456	0
chr1	243373172	243373579	A549_Myers.11285	0	.	243373172	243373579	0	1	407	0
chr1	243935821	243939316	melanoma_Garraway_short_term_cultures.11554	0	.	243935821	243939316	0	1	3495	0
chr1	243936137	243937359	H1_polyA+.18527	0	.	243936137	243937359	0	1	1222	0
chr1	243936284	243937649	REMC_MyoepithelialBreast.15725	0	.	243936284	243937649	0	1	1365	0
chr1	243936395	243939415	REMC_LuminalBreast.16857	0	.	243936395	243939415	0	1	3020	0
chr1	243936407	243936976	prostate_normal.9441	0	.	243936407	243936976	0	1	569	0
chr1	243953404	243954011	B_Cells_Pritchard.498627	0	.	243953404	243954011	0	1	607	0
chr1	244906244	244906954	REMC_MyoepithelialBreast.15865	0	.	244906244	244906954	0	1	710	0
chr1	244907338	244908219	REMC_MyoepithelialBreast.15866	0	.	244907338	244908219	0	1	881	0
chr1	244907779	244908243	B_cells_Cheung.31358	0	.	244907779	244908243	0	1	464	0
chr1	244908658	244911369	REMC_MyoepithelialBreast.15867	0	.	244908658	244911369	0	1	2711	0
chr1	244908694	244915309	REMC_LuminalBreast.16943	0	.	244908694	244915309	0	1	6615	0
chr1	244908770	244910335	prostate_carcinoma.15631	0	.	244908770	244910335	0	1	1565	0
chr1	244908883	244911372	B_Cells_Pritchard.501593	0	.	244908883	244911372	0	1	2489	0
chr1	244909214	244910081	B_cells_Cheung.31361	0	.	244909214	244910081	0	1	867	0
chr1	244910065	244911342	MIP101.11009	0	.	244910065	244911342	0	1	1277	0
chr1	244910434	244911236	prostate_carcinoma.15633	0	.	244910434	244911236	0	1	802	0
chr1	244910926	244911362	B_cells_Cheung.31363	0	.	244910926	244911362	0	1	436	0
chr1	244912901	244914098	CD4_Plagnol_resting.10817	0	.	244912901	244914098	0	1	1197	0
chr1	245002160	245002495	IMR90_UCSD_REMC.8334	0	-	245002160	245002495	0	1	335	0
chr1	245020013	245024119	khalil_214	0	.	245020013	245024119	0	3	219,279,232	0,702,3874
chr1	245020142	245021564	liver_polyA+.22150	0	.	245020142	245021564	0	1	1422	0
chr1	245020195	245022291	B_Cells_Pritchard.501745	0	.	245020195	245022291	0	1	2096	0
chr1	245020361	245020887	MIP101.11024	0	.	245020361	245020887	0	1	526	0
chr1	245020365	245021089	BT474_Burge_Thompson.5265	0	.	245020365	245021089	0	1	724	0
chr1	245020368	245023234	H1_polyA+.18703	0	.	245020368	245023234	0	1	2866	0
chr1	245020371	245021409	MCF7_Burge_Thompson.5100	0	.	245020371	245021409	0	1	1038	0
chr1	245020381	245022314	brain_AmbionMAQC.7414	0	.	245020381	245022314	0	1	1933	0
chr1	245020381	245022314	brain_AmbionMAQC.7413	0	+	245020381	245022314	0	2	739,333	0,1600
chr1	245020439	245021411	HIT000336646	0	+	245020439	245021411	0	1	972	0
chr1	245020769	245021254	A549_Myers.11323	0	.	245020769	245021254	0	1	485	0
chr1	245022383	245022803	prostate_normal.9488	0	.	245022383	245022803	0	1	420	0
chr1	245022458	245022958	brain_AmbionMAQC.7408	0	.	245022458	245022958	0	1	500	0
chr1	245163347	245164366	H1_polyA+.18759	0	.	245163347	245164366	0	1	1019	0
chr1	245163373	245164332	REMC_MyoepithelialBreast.15898	0	.	245163373	245164332	0	1	959	0
chr1	245173134	245174556	HepG2_Caltech_ENCODE.6003	0	.	245173134	245174556	0	1	1422	0
chr1	245406359	245407062	prostate_normal.9520	0	.	245406359	245407062	0	1	703	0
chr1	245439823	245440778	CD4_Plagnol_activated.11152	0	.	245439823	245440778	0	1	955	0
chr1	245440077	245440781	CD4_Snyder.12792	0	.	245440077	245440781	0	1	704	0
chr1	245440158	245440754	liver_polyA+.22223	0	.	245440158	245440754	0	1	596	0
chr1	245440224	245440783	MDAMB231_Thompson.3888	0	.	245440224	245440783	0	1	559	0
chr1	245478148	245478747	REMC_MyoepithelialBreast.15989	0	.	245478148	245478747	0	1	599	0
chr1	245496861	245499523	REMC_MyoepithelialBreast.15998	0	.	245496861	245499523	0	1	2662	0
chr1	245499056	245501306	REMC_LuminalBreast.17114	0	.	245499056	245501306	0	1	2250	0
chr1	245504037	245506439	REMC_MyoepithelialBreast.16001	0	.	245504037	245506439	0	1	2402	0
chr1	245504361	245506406	REMC_LuminalBreast.17117	0	.	245504361	245506406	0	1	2045	0
chr1	245505561	245506480	REMC_BreastStem.8735	0	.	245505561	245506480	0	1	919	0
chr1	245505717	245506360	H1_polyA+.18839	0	.	245505717	245506360	0	1	643	0
chr1	245506581	245507728	REMC_LuminalBreast.17118	0	.	245506581	245507728	0	1	1147	0
chr1	245506583	245507996	REMC_MyoepithelialBreast.16002	0	.	245506583	245507996	0	1	1413	0
chr1	245506598	245507777	H1_polyA+.18840	0	.	245506598	245507777	0	1	1179	0
chr1	245506839	245507614	REMC_BreastStem.8736	0	.	245506839	245507614	0	1	775	0
chr1	245508486	245512407	REMC_MyoepithelialBreast.16003	0	.	245508486	245512407	0	1	3921	0
chr1	245508520	245509751	REMC_LuminalBreast.17119	0	.	245508520	245509751	0	1	1231	0
chr1	245512528	245515425	REMC_MyoepithelialBreast.16004	0	.	245512528	245515425	0	1	2897	0
chr1	245512538	245515360	REMC_LuminalBreast.17121	0	.	245512538	245515360	0	1	2822	0
chr1	245512547	245515420	H1_polyA+.18842	0	.	245512547	245515420	0	1	2873	0
chr1	245512871	245514056	REMC_BreastStem.8738	0	.	245512871	245514056	0	1	1185	0
chr1	245513024	245513921	B_Cells_Pritchard.503413	0	.	245513024	245513921	0	1	897	0
chr1	245513027	245513697	B_cells_Cheung.31658	0	.	245513027	245513697	0	1	670	0
chr1	245514624	245515221	brain_AmbionMAQC.7454	0	.	245514624	245515221	0	1	597	0
chr1	245514638	245514971	prostate_normal.9569	0	.	245514638	245514971	0	1	333	0
chr1	245515697	245518008	H1_polyA+.18843	0	.	245515697	245518008	0	1	2311	0
chr1	245515714	245519688	REMC_LuminalBreast.17122	0	.	245515714	245519688	0	1	3974	0
chr1	245516245	245517812	B_Cells_Pritchard.503421	0	.	245516245	245517812	0	1	1567	0
chr1	245516377	245516877	H9_polyA+.7818	0	.	245516377	245516877	0	1	500	0
chr1	245516805	245517889	B_cells_Cheung.31662	0	.	245516805	245517889	0	1	1084	0
chr1	245517440	245519732	REMC_MyoepithelialBreast.16006	0	.	245517440	245519732	0	1	2292	0
chr1	245518154	245519564	H1_polyA+.18844	0	.	245518154	245519564	0	1	1410	0
chr1	245518158	245518642	B_cells_Cheung.31663	0	.	245518158	245518642	0	1	484	0
chr1	245518717	245519410	B_cells_Cheung.31664	0	.	245518717	245519410	0	1	693	0
chr1	245518808	245519387	B_Cells_Pritchard.503429	0	.	245518808	245519387	0	1	579	0
chr1	245562001	245564460	HIT000296771	0	+	245562001	245564460	0	1	2459	0
chr1	245562832	245564466	CD4_Plagnol_activated.11159	0	.	245562832	245564466	0	1	1634	0
chr1	245562889	245564564	testes_Burge.8918	0	.	245562889	245564564	0	1	1675	0
chr1	245563504	245564687	CD4_Plagnol_resting.10863	0	.	245563504	245564687	0	1	1183	0
chr1	245563940	245564450	MB435_Burge.6942	0	.	245563940	245564450	0	1	510	0
chr1	245563949	245564482	liver_polyA+.22239	0	.	245563949	245564482	0	1	533	0
chr1	245563957	245564368	kidney_Gilad.14556	0	.	245563957	245564368	0	1	411	0
chr1	245563964	245564487	adipose_Burge.6406	0	.	245563964	245564487	0	1	523	0
chr1	245563984	245564346	HME_Burge.7121	0	.	245563984	245564346	0	1	362	0
chr1	245564446	245565386	H1_rRNA-depleted_UCSD_REMC.15096	0	.	245564446	245565386	0	1	940	0
chr1	245564918	245565395	HepG2_Caltech_ENCODE.6063	0	.	245564918	245565395	0	1	477	0
chr1	245565157	245567019	REMC_BreastStem.8851	0	.	245565157	245567019	0	1	1862	0
chr1	245565671	245567352	melanoma_Garraway_short_term_cultures.11761	0	.	245565671	245567352	0	1	1681	0
chr1	245566012	245566849	brain_AmbionMAQC.7502	0	.	245566012	245566849	0	1	837	0
chr1	245566036	245566993	H9_polyA+.7822	0	.	245566036	245566993	0	1	957	0
chr1	245566111	245567026	prostate_normal.9578	0	.	245566111	245567026	0	1	915	0
chr1	245566144	245568260	BT474_Burge_Thompson.5430	0	.	245566144	245568260	0	1	2116	0
chr1	245566279	245567840	HepG2_Caltech_ENCODE.6064	0	.	245566279	245567840	0	1	1561	0
chr1	245566958	245568168	brain_AmbionMAQC.7504	0	.	245566958	245568168	0	1	1210	0
chr1	245567091	245569155	H9_polyA+.7823	0	+	245567091	245569155	0	2	1145,473	0,1591
chr1	245567091	245568262	HeLa_polyA+_Chen.6126	0	.	245567091	245568262	0	1	1171	0
chr1	245567191	245568228	prostate_normal.9580	0	.	245567191	245568228	0	1	1037	0
chr1	245567605	245567940	NEC_from_H9.12646	0	.	245567605	245567940	0	1	335	0
chr1	245568485	245571016	HeLa_polyA+_Chen.6129	0	.	245568485	245571016	0	1	2531	0
chr1	245568503	245572187	B_cells_Cheung.31705	0	.	245568503	245572187	0	1	3684	0
chr1	245568514	245570462	HepG2_Caltech_ENCODE.6066	0	.	245568514	245570462	0	1	1948	0
chr1	245568518	245570406	BT474_Burge_Thompson.5429	0	.	245568518	245570406	0	1	1888	0
chr1	245568529	245572127	K562.8137	0	.	245568529	245572127	0	1	3598	0
chr1	245569229	245571197	MIP101.11123	0	.	245569229	245571197	0	1	1968	0
chr1	245569245	245570337	H9_polyA+.7825	0	.	245569245	245570337	0	1	1092	0
chr1	245569285	245570578	prostate_normal.9582	0	.	245569285	245570578	0	1	1293	0
chr1	245569362	245571187	melanoma_Garraway_short_term_cultures.11763	0	.	245569362	245571187	0	1	1825	0
chr1	245570981	245572169	HepG2_Caltech_ENCODE.6067	0	.	245570981	245572169	0	1	1188	0
chr1	245571138	245572199	HeLa_polyA+_Chen.6128	0	.	245571138	245572199	0	1	1061	0
chr1	245571140	245582452	B_Cells_Pritchard.503441	0	+	245571140	245582452	0	4	1069,824,329,25	0,2145,3171,11287
chr1	245571140	245582882	B_Cells_Pritchard.503443	0	-	245571140	245582882	0	3	1091,1497,292	0,2203,11450
chr1	245571146	245572228	H9_polyA+.7827	0	.	245571146	245572228	0	1	1082	0
chr1	245571249	245572134	MIP101.11124	0	.	245571249	245572134	0	1	885	0
chr1	245571368	245572126	melanoma_Garraway_short_term_cultures.11764	0	.	245571368	245572126	0	1	758	0
chr1	245571379	245572113	prostate_normal.9583	0	.	245571379	245572113	0	1	734	0
chr1	245571527	245572164	BT474_Burge_Thompson.5435	0	.	245571527	245572164	0	1	637	0
chr1	245573241	245580555	REMC_MyoepithelialBreast.16060	0	.	245573241	245580555	0	1	7314	0
chr1	245573243	245581153	H1_polyA+.18848	0	-	245573243	245581153	0	2	3138,1465	0,6445
chr1	245574167	245574662	HeLa_polyA+_Chen.6131	0	.	245574167	245574662	0	1	495	0
chr1	245579183	245581153	H1_polyA+.18850	0	.	245579183	245581153	0	1	1970	0
chr1	245580012	245580607	REMC_BreastStem.8857	0	.	245580012	245580607	0	1	595	0
chr1	245580446	245583641	BT474_Burge_Thompson.5431	0	+	245580446	245583641	0	2	237,1084	0,2111
chr1	245581047	245583672	REMC_MyoepithelialBreast.16061	0	.	245581047	245583672	0	1	2625	0
chr1	245581309	245584241	REMC_LuminalBreast.17143	0	.	245581309	245584241	0	1	2932	0
chr1	245581342	245584244	REMC_BreastStem.8858	0	.	245581342	245584244	0	1	2902	0
chr1	245581386	245583721	H1_polyA+.18851	0	.	245581386	245583721	0	1	2335	0
chr1	245582770	245583662	B_cells_Cheung.31714	0	.	245582770	245583662	0	1	892	0
chr1	245583175	245583519	prostate_carcinoma.15760	0	.	245583175	245583519	0	1	344	0
chr1	245583847	245584257	H1_polyA+.18852	0	.	245583847	245584257	0	1	410	0
chr1	245583862	245589261	Rinn_00001360	0	+	245583862	245589261	0	2	350,1556	0,3843
chr1	245585205	245586909	REMC_LuminalBreast.17144	0	.	245585205	245586909	0	1	1704	0
chr1	245585418	245586910	BT474_Burge_Thompson.5444	0	.	245585418	245586910	0	1	1492	0
chr1	245585731	245586158	B_Cells_Pritchard.503525	0	+	245585731	245586158	0	1	427	0
chr1	245586856	245591875	REMC_MyoepithelialBreast.16063	0	.	245586856	245591875	0	1	5019	0
chr1	245586866	245589074	H1_polyA+.18854	0	.	245586866	245589074	0	1	2208	0
chr1	245587105	245591839	REMC_LuminalBreast.17145	0	.	245587105	245591839	0	1	4734	0
chr1	245587379	245597196	BT474_Burge_Thompson.5446	0	+	245587379	245597196	0	2	10,1855	0,7962
chr1	245587508	245589897	prostate_carcinoma.15761	0	.	245587508	245589897	0	1	2389	0
chr1	245587552	245588880	B_Cells_Pritchard.503531	0	.	245587552	245588880	0	1	1328	0
chr1	245587591	245589110	REMC_BreastStem.8860	0	.	245587591	245589110	0	1	1519	0
chr1	245587710	245590876	BT474_Burge_Thompson.5447	0	.	245587710	245590876	0	1	3166	0
chr1	245588237	245589281	HeLa_polyA+_Chen.6137	0	.	245588237	245589281	0	1	1044	0
chr1	245588510	245588976	H9_polyA+.7834	0	.	245588510	245588976	0	1	466	0
chr1	245589174	245591088	REMC_BreastStem.8861	0	.	245589174	245591088	0	1	1914	0
chr1	245589174	245591872	H1_polyA+.18855	0	.	245589174	245591872	0	1	2698	0
chr1	245589308	245590426	B_Cells_Pritchard.503535	0	.	245589308	245590426	0	1	1118	0
chr1	245592131	245592725	H1_polyA+.18856	0	.	245592131	245592725	0	1	594	0
chr1	245592161	245593074	REMC_MyoepithelialBreast.16064	0	.	245592161	245593074	0	1	913	0
chr1	245594213	245599086	REMC_MyoepithelialBreast.16066	0	.	245594213	245599086	0	1	4873	0
chr1	245594249	245598379	REMC_LuminalBreast.17148	0	.	245594249	245598379	0	1	4130	0
chr1	245594281	245597266	REMC_BreastStem.8862	0	.	245594281	245597266	0	1	2985	0
chr1	245594610	245594997	prostate_carcinoma.15762	0	.	245594610	245594997	0	1	387	0
chr1	245594612	245595853	H1_polyA+.18858	0	.	245594612	245595853	0	1	1241	0
chr1	245595958	245598322	H1_polyA+.18859	0	.	245595958	245598322	0	1	2364	0
chr1	245603899	245605407	REMC_LuminalBreast.17149	0	.	245603899	245605407	0	1	1508	0
chr1	245603946	245605460	Rinn_00001361	0	+	245603946	245605460	0	2	122,880	0,634
chr1	245604498	245607150	BT474_Burge_Thompson.5452	0	.	245604498	245607150	0	1	2652	0
chr1	245607552	245608847	REMC_MyoepithelialBreast.16069	0	.	245607552	245608847	0	1	1295	0
chr1	245608451	245609087	B_cells_Cheung.31730	0	.	245608451	245609087	0	1	636	0
chr1	245618397	245620243	REMC_MyoepithelialBreast.16073	0	+	245618397	245620243	0	2	816,152	0,1694
chr1	245619696	245620313	B_cells_Cheung.31740	0	.	245619696	245620313	0	1	617	0
chr1	245636412	245636827	B_cells_Cheung.31753	0	.	245636412	245636827	0	1	415	0
chr1	245637173	245637781	B_cells_Cheung.31754	0	.	245637173	245637781	0	1	608	0
chr1	246921616	246921960	A549_Myers.11394	0	.	246921616	246921960	0	1	344	0
chr1	246932329	246933216	B_Cells_Pritchard.506011	0	.	246932329	246933216	0	1	887	0
chr1	246932396	246933452	brain_AmbionMAQC.7483	0	.	246932396	246933452	0	1	1056	0
chr1	247064282	247068818	REMC_LuminalBreast.17134	0	.	247064282	247068818	0	1	4536	0
chr1	247065654	247068285	B_cells_Cheung.31890	0	.	247065654	247068285	0	1	2631	0
chr1	247123241	247124292	prostate_carcinoma.15822	0	.	247123241	247124292	0	1	1051	0
chr1	247123277	247125969	prostate_normal.9622	0	.	247123277	247125969	0	1	2692	0
chr1	247123757	247124697	A549_Myers.11405	0	.	247123757	247124697	0	1	940	0
chr1	247124388	247126489	REMC_BreastStem.8833	0	.	247124388	247126489	0	1	2101	0
chr1	247124389	247126759	REMC_MyoepithelialBreast.16075	0	.	247124389	247126759	0	1	2370	0
chr1	247126972	247131720	REMC_LuminalBreast.17152	0	.	247126972	247131720	0	1	4748	0
chr1	247127507	247128075	B_cells_Cheung.31905	0	.	247127507	247128075	0	1	568	0
chr1	247127558	247130165	REMC_BreastStem.8834	0	.	247127558	247130165	0	1	2607	0
chr1	247127582	247131351	REMC_MyoepithelialBreast.16076	0	.	247127582	247131351	0	1	3769	0
chr1	247127951	247128376	BT474_Burge_Thompson.5381	0	.	247127951	247128376	0	1	425	0
chr1	247127979	247128585	prostate_carcinoma.15824	0	.	247127979	247128585	0	1	606	0
chr1	247151365	247151891	B_Cells_Pritchard.506407	0	.	247151365	247151891	0	1	526	0
chr1	247151447	247151750	BT474_Burge_Thompson.5382	0	.	247151447	247151750	0	1	303	0
chr1	247185587	247185970	H1_polyA+.18888	0	.	247185587	247185970	0	1	383	0
chr10	164787	165946	B_cells_Cheung.31916	0	.	164787	165946	0	1	1159	0
chr10	304785	306363	REMC_LuminalBreast.17165	0	.	304785	306363	0	1	1578	0
chr10	755658	756110	A549_Myers.11508	0	.	755658	756110	0	1	452	0
chr10	764393	764860	A549_Myers.11510	0	.	764393	764860	0	1	467	0
chr10	795053	796227	B_Cells_Pritchard.508363	0	.	795053	796227	0	1	1174	0
chr10	809718	810319	REMC_MyoepithelialBreast.16135	0	.	809718	810319	0	1	601	0
chr10	809913	812097	REMC_LuminalBreast.17236	0	.	809913	812097	0	1	2184	0
chr10	811406	811836	A549_Myers.11513	0	.	811406	811836	0	1	430	0
chr10	817302	819706	REMC_LuminalBreast.17253	0	.	817302	819706	0	1	2404	0
chr10	818112	818851	REMC_MyoepithelialBreast.16136	0	.	818112	818851	0	1	739	0
chr10	818924	819415	REMC_MyoepithelialBreast.16137	0	.	818924	819415	0	1	491	0
chr10	820463	820952	A549_Myers.11515	0	.	820463	820952	0	1	489	0
chr10	821009	821516	A549_Myers.11516	0	.	821009	821516	0	1	507	0
chr10	822269	824074	REMC_LuminalBreast.17275	0	.	822269	824074	0	1	1805	0
chr10	824150	828593	REMC_LuminalBreast.17277	0	.	824150	828593	0	1	4443	0
chr10	824239	824589	A549_Myers.11517	0	.	824239	824589	0	1	350	0
chr10	824316	826277	REMC_BreastStem.8893	0	.	824316	826277	0	1	1961	0
chr10	824551	826599	B_Cells_Pritchard.508459	0	.	824551	826599	0	1	2048	0
chr10	824574	825151	B_cells_Cheung.31982	0	.	824574	825151	0	1	577	0
chr10	824624	826213	prostate_carcinoma.15984	0	.	824624	826213	0	1	1589	0
chr10	824774	841196	A549_Myers.11518	0	-	824774	841196	0	2	722,304	0,16118
chr10	824774	826131	A549_Myers.11519	0	.	824774	826131	0	1	1357	0
chr10	824807	826243	prostate_normal.9642	0	.	824807	826243	0	1	1436	0
chr10	825034	826591	MIP101.11200	0	.	825034	826591	0	1	1557	0
chr10	825161	826142	HepG2_Caltech_ENCODE.6098	0	.	825161	826142	0	1	981	0
chr10	825383	825823	B_cells_Cheung.31983	0	.	825383	825823	0	1	440	0
chr10	825887	826524	B_cells_Cheung.31984	0	.	825887	826524	0	1	637	0
chr10	826350	827403	REMC_BreastStem.8894	0	.	826350	827403	0	1	1053	0
chr10	826696	827146	B_cells_Cheung.31985	0	.	826696	827146	0	1	450	0
chr10	826701	828748	B_Cells_Pritchard.508461	0	.	826701	828748	0	1	2047	0
chr10	826722	828551	prostate_carcinoma.15986	0	.	826722	828551	0	1	1829	0
chr10	826722	828551	prostate_carcinoma.15985	0	-	826722	828551	0	2	1061,670	0,1159
chr10	826733	827417	prostate_normal.9643	0	.	826733	827417	0	1	684	0
chr10	827374	828247	MIP101.11201	0	.	827374	828247	0	1	873	0
chr10	827480	828028	A549_Myers.11522	0	-	827480	828028	0	2	303,147	0,401
chr10	827494	827954	prostate_normal.9644	0	.	827494	827954	0	1	460	0
chr10	827555	828028	B_cells_Cheung.31986	0	.	827555	828028	0	1	473	0
chr10	827677	828372	HepG2_Caltech_ENCODE.6099	0	.	827677	828372	0	1	695	0
chr10	827693	828359	REMC_BreastStem.8895	0	.	827693	828359	0	1	666	0
chr10	830227	831048	MIP101.11203	0	.	830227	831048	0	1	821	0
chr10	830327	831103	REMC_LuminalBreast.17278	0	.	830327	831103	0	1	776	0
chr10	830665	833910	REMC_MyoepithelialBreast.16185	0	.	830665	833910	0	1	3245	0
chr10	836909	839564	REMC_MyoepithelialBreast.16187	0	.	836909	839564	0	1	2655	0
chr10	838996	839466	B_cells_Cheung.31989	0	.	838996	839466	0	1	470	0
chr10	839900	842622	CD4_Plagnol_activated.11197	0	.	839900	842622	0	1	2722	0
chr10	840103	840515	A549_Myers.11524	0	.	840103	840515	0	1	412	0
chr10	840270	841856	BT20_Thompson.3818	0	.	840270	841856	0	1	1586	0
chr10	840530	842272	HeLa_polyA+_Chen.6148	0	.	840530	842272	0	1	1742	0
chr10	840622	844227	MCF7_Burge_Thompson.5223	0	.	840622	844227	0	1	3605	0
chr10	840692	843928	CD4_Plagnol_resting.10944	0	.	840692	843928	0	1	3236	0
chr10	840862	841196	A549_Myers.11520	0	.	840862	841196	0	1	334	0
chr10	841601	844244	T47D_Burge_Thompson.4748	0	.	841601	844244	0	1	2643	0
chr10	841640	842418	melanoma_Garraway_short_term_cultures.11854	0	.	841640	842418	0	1	778	0
chr10	841644	842098	H9_polyA+.7868	0	.	841644	842098	0	1	454	0
chr10	841866	842344	A549_Myers.11525	0	.	841866	842344	0	1	478	0
chr10	967926	968271	testes_Burge.8990	0	.	967926	968271	0	1	345	0
chr10	967926	968274	A549_Myers.11535	0	.	967926	968274	0	1	348	0
chr10	967951	968422	B_cells_Cheung.31996	0	.	967951	968422	0	1	471	0
chr10	967980	968294	MIP101.11234	0	.	967980	968294	0	1	314	0
chr10	968638	971107	prostate_carcinoma.15998	0	+	968638	971107	0	2	417,332	0,2137
chr10	968754	969335	MIP101.11235	0	.	968754	969335	0	1	581	0
chr10	970283	971644	REMC_LuminalBreast.17302	0	.	970283	971644	0	1	1361	0
chr10	970461	971480	MIP101.11236	0	.	970461	971480	0	1	1019	0
chr10	970496	971637	prostate_carcinoma.15997	0	.	970496	971637	0	1	1141	0
chr10	970508	971813	REMC_MyoepithelialBreast.16172	0	.	970508	971813	0	1	1305	0
chr10	970508	971878	H1_polyA+.19054	0	.	970508	971878	0	1	1370	0
chr10	970630	971666	B_Cells_Pritchard.508703	0	+	970630	971666	0	1	1036	0
chr10	970723	971652	B_cells_Cheung.31999	0	.	970723	971652	0	1	929	0
chr10	970821	971151	testes_Burge.8991	0	.	970821	971151	0	1	330	0
chr10	974905	975803	prostate_carcinoma.16001	0	.	974905	975803	0	1	898	0
chr10	979145	980368	REMC_MyoepithelialBreast.16231	0	.	979145	980368	0	1	1223	0
chr10	979169	980846	prostate_carcinoma.16003	0	.	979169	980846	0	1	1677	0
chr10	980306	980648	A549_Myers.11538	0	.	980306	980648	0	1	342	0
chr10	981607	982287	B_Cells_Pritchard.508739	0	.	981607	982287	0	1	680	0
chr10	989581	990751	REMC_MyoepithelialBreast.16232	0	.	989581	990751	0	1	1170	0
chr10	989608	990724	MIP101.11241	0	.	989608	990724	0	1	1116	0
chr10	989614	990732	B_Cells_Pritchard.508763	0	.	989614	990732	0	1	1118	0
chr10	989893	990639	REMC_LuminalBreast.17280	0	.	989893	990639	0	1	746	0
chr10	990249	990723	MCF7_Burge_Thompson.5169	0	.	990249	990723	0	1	474	0
chr10	990271	990692	B_cells_Cheung.32004	0	.	990271	990692	0	1	421	0
chr10	991027	991958	REMC_LuminalBreast.17281	0	.	991027	991958	0	1	931	0
chr10	991033	992302	B_Cells_Pritchard.508765	0	.	991033	992302	0	1	1269	0
chr10	991055	991688	B_cells_Cheung.32005	0	.	991055	991688	0	1	633	0
chr10	991079	992297	MIP101.11242	0	.	991079	992297	0	1	1218	0
chr10	1000658	1001218	A549_Myers.11547	0	.	1000658	1001218	0	1	560	0
chr10	1001094	1001487	pHIT000017170	0	+	1001094	1001487	0	1	393	0
chr10	1004087	1005359	B_Cells_Pritchard.508833	0	.	1004087	1005359	0	1	1272	0
chr10	1004211	1005483	B_cells_Cheung.32010	0	.	1004211	1005483	0	1	1272	0
chr10	1004321	1005363	prostate_carcinoma.16143	0	.	1004321	1005363	0	1	1042	0
chr10	1170946	1174119	K562.8206	0	.	1170946	1174119	0	1	3173	0
chr10	1176321	1177145	K562.8207	0	.	1176321	1177145	0	1	824	0
chr10	1178375	1180503	K562.8209	0	.	1178375	1180503	0	1	2128	0
chr10	1182746	1183820	K562.8210	0	.	1182746	1183820	0	1	1074	0
chr10	1182972	1183634	B_cells_Cheung.32059	0	.	1182972	1183634	0	1	662	0
chr10	1183923	1184289	K562.8211	0	.	1183923	1184289	0	1	366	0
chr10	1185914	1186831	B_Cells_Pritchard.509045	0	.	1185914	1186831	0	1	917	0
chr10	1185974	1186458	B_cells_Cheung.32061	0	.	1185974	1186458	0	1	484	0
chr10	1186045	1187070	K562.8213	0	.	1186045	1187070	0	1	1025	0
chr10	1188882	1194107	K562.8216	0	.	1188882	1194107	0	1	5225	0
chr10	1188882	1194076	K562.8217	0	+	1188882	1194076	0	2	4135,158	0,5036
chr10	1191446	1193100	B_cells_Cheung.32064	0	.	1191446	1193100	0	1	1654	0
chr10	1191896	1192257	A549_Myers.11596	0	.	1191896	1192257	0	1	361	0
chr10	1192535	1193428	B_Cells_Pritchard.509069	0	.	1192535	1193428	0	1	893	0
chr10	1195137	1195612	B_cells_Cheung.32065	0	.	1195137	1195612	0	1	475	0
chr10	1195242	1204306	K562.8219	0	-	1195242	1204306	0	3	10,3012,3455	0,2476,5609
chr10	1195706	1200612	Rinn_00017666	0	+	1195706	1200612	0	3	224,86,2127	0,785,2779
chr10	1195707	1198925	HIT000391088	0	+	1195707	1198925	0	3	223,85,439	0,785,2779
chr10	1195707	1200612	NR_015376	0	+	1195707	1200612	0	3	223,85,2126	0,785,2779
chr10	1195707	1200612	ENST00000425630	0	+	1195707	1200612	0	3	223,85,2126	0,785,2779
chr10	1195755	1198925	HIT000391090	0	+	1195755	1198925	0	3	175,85,439	0,737,2731
chr10	1195757	1200612	HIT000022527	0	+	1195757	1200612	0	3	173,85,2126	0,735,2729
chr10	1195769	1204306	K562.8220	0	+	1195769	1204306	0	3	161,85,5820	0,723,2717
chr10	1195785	1200618	B_cells_Cheung.32066	0	+	1195785	1200618	0	3	145,85,2132	0,707,2701
chr10	1196576	1196914	A549_Myers.11597	0	.	1196576	1196914	0	1	338	0
chr10	1199474	1200619	B_Cells_Pritchard.509091	0	.	1199474	1200619	0	1	1145	0
chr10	1200879	1201196	B_cells_Cheung.32068	0	.	1200879	1201196	0	1	317	0
chr10	1200905	1201616	B_Cells_Pritchard.509093	0	.	1200905	1201616	0	1	711	0
chr10	1201275	1203775	B_cells_Cheung.32069	0	.	1201275	1203775	0	1	2500	0
chr10	1202107	1203960	B_Cells_Pritchard.509097	0	.	1202107	1203960	0	1	1853	0
chr10	1208879	1209463	A549_Myers.11599	0	.	1208879	1209463	0	1	584	0
chr10	1213250	1216220	H1_polyA+.19087	0	.	1213250	1216220	0	1	2970	0
chr10	1213386	1216295	B_cells_Cheung.32070	0	.	1213386	1216295	0	1	2909	0
chr10	1213870	1214335	prostate_normal.9695	0	.	1213870	1214335	0	1	465	0
chr10	1214210	1214636	A549_Myers.11600	0	.	1214210	1214636	0	1	426	0
chr10	1215142	1216153	CD4_Plagnol_resting.10962	0	.	1215142	1216153	0	1	1011	0
chr10	1775350	1780326	prostate_carcinoma.16127	0	-	1775350	1780326	0	3	1054,467,206	0,2760,4770
chr10	1778064	1778407	A549_Myers.11630	0	.	1778064	1778407	0	1	343	0
chr10	1822401	1822752	A549_Myers.11631	0	.	1822401	1822752	0	1	351	0
chr10	1886154	1907032	pHIT000017183	0	-	1886154	1907032	0	3	153,53,142	0,16077,20736
chr10	1937762	1953236	pHIT000017184	0	-	1937762	1953236	0	3	442,45,56	0,6307,15418
chr10	1992708	1994570	HeLa_polyA-_Chen.3329	0	.	1992708	1994570	0	1	1862	0
chr10	1993682	1996202	HeLa_polyA+_Chen.6185	0	.	1993682	1996202	0	1	2520	0
chr10	1996283	2003729	HeLa_polyA+_Chen.6179	0	.	1996283	2003729	0	1	7446	0
chr10	2008924	2010239	HeLa_polyA+_Chen.6182	0	.	2008924	2010239	0	1	1315	0
chr10	2011792	2012447	HeLa_polyA+_Chen.6188	0	.	2011792	2012447	0	1	655	0
chr10	2037666	2046542	ENST00000413603	0	-	2037666	2046542	0	3	1671,212,214	0,7774,8662
chr10	2037666	2046543	HIT000022328	0	-	2037666	2046543	0	3	1671,212,215	0,7774,8662
chr10	2044458	2046542	ENST00000438372	0	-	2044458	2046542	0	3	304,259,214	0,982,1870
chr10	2131535	2180148	pHIT000108664	0	-	2131535	2180148	0	2	349,221	0,48392
chr10	2185338	2186833	HeLa_polyA+_Chen.6194	0	.	2185338	2186833	0	1	1495	0
chr10	2198522	2201654	HIT000012715	0	+	2198522	2201654	0	2	77,2247	0,885
chr10	2198524	2201654	Rinn_00017758	0	+	2198524	2201654	0	2	75,2248	0,882
chr10	2198525	2201654	ENST00000421077	0	+	2198525	2201654	0	2	74,2247	0,882
chr10	2277859	2278185	A549_Myers.11635	0	.	2277859	2278185	0	1	326	0
chr10	2332453	2347268	HIT000259511	0	-	2332453	2347268	0	3	5477,42,45	0,6008,14770
chr10	2406367	2406893	A549_Myers.11637	0	.	2406367	2406893	0	1	526	0
chr10	2479230	2534341	Rinn_00018866	0	-	2479230	2534341	0	3	314,253,530	0,54266,54581
chr10	2507199	2534139	pHIT000108665	0	-	2507199	2534139	0	2	390,642	0,26298
chr10	2522058	2534341	Rinn_00018867	0	-	2522058	2534341	0	3	102,253,530	0,11438,11753
chr10	2533387	2599521	Rinn_00018083	0	+	2533387	2599521	0	3	794,118,802	0,58694,65332
chr10	2533387	2602742	Rinn_00018084	0	+	2533387	2602742	0	4	794,118,93,356	0,58694,65332,68999
chr10	2533412	2602564	Rinn_00018085	0	+	2533412	2602564	0	3	769,93,178	0,65307,68974
chr10	2533973	2599431	Rinn_00017760	0	+	2533973	2599431	0	2	208,712	0,64746
chr10	2585206	2661813	pHIT000017185	0	-	2585206	2661813	0	7	239,57,160,104,135,119,23	0,23761,38736,40857,55585,58057,76584
chr10	2679497	2679913	B_Cells_Pritchard.512733	0	.	2679497	2679913	0	1	416	0
chr10	2690343	2691526	B_Cells_Pritchard.512769	0	.	2690343	2691526	0	1	1183	0
chr10	2692474	2693205	B_Cells_Pritchard.512775	0	.	2692474	2693205	0	1	731	0
chr10	2967842	2968161	B_Cells_Pritchard.513391	0	.	2967842	2968161	0	1	319	0
chr10	3004069	3006904	prostate_carcinoma.16133	0	.	3004069	3006904	0	1	2835	0
chr10	3005062	3005918	prostate_normal.9706	0	.	3005062	3005918	0	1	856	0
chr10	3009855	3010508	prostate_carcinoma.16135	0	.	3009855	3010508	0	1	653	0
chr10	3016285	3018432	prostate_carcinoma.16136	0	.	3016285	3018432	0	1	2147	0
chr10	3016400	3017641	prostate_normal.9707	0	.	3016400	3017641	0	1	1241	0
chr10	3016507	3018442	MIP101.11273	0	.	3016507	3018442	0	1	1935	0
chr10	3017105	3017775	B_Cells_Pritchard.513551	0	.	3017105	3017775	0	1	670	0
chr10	3017132	3017543	A549_Myers.11643	0	.	3017132	3017543	0	1	411	0
chr10	3042262	3043772	prostate_carcinoma.16140	0	.	3042262	3043772	0	1	1510	0
chr10	3043041	3043384	A549_Myers.11645	0	.	3043041	3043384	0	1	343	0
chr10	3052440	3052766	A549_Myers.11646	0	.	3052440	3052766	0	1	326	0
chr10	3078423	3078762	A549_Myers.11648	0	.	3078423	3078762	0	1	339	0
chr10	3084721	3099519	Rinn_00018868	0	-	3084721	3099519	0	3	613,138,576	0,1429,14222
chr10	3097543	3099575	REMC_BreastStem.8931	0	-	3097543	3099575	0	2	1039,631	0,1401
chr10	3212507	3213139	REMC_MyoepithelialBreast.16208	0	.	3212507	3213139	0	1	632	0
chr10	3227416	3228307	REMC_LuminalBreast.17330	0	.	3227416	3228307	0	1	891	0
chr10	3228394	3229262	REMC_LuminalBreast.17331	0	.	3228394	3229262	0	1	868	0
chr10	3228965	3229930	REMC_MyoepithelialBreast.16209	0	.	3228965	3229930	0	1	965	0
chr10	3240672	3240977	A549_Myers.11654	0	.	3240672	3240977	0	1	305	0
chr10	3240752	3263793	pHIT000108674	0	+	3240752	3263793	0	3	43,117,335	0,21848,22706
chr10	3270466	3271170	brain_AmbionMAQC.7598	0	.	3270466	3271170	0	1	704	0
chr10	3270857	3271202	B_Cells_Pritchard.514031	0	.	3270857	3271202	0	1	345	0
chr10	3278896	3284645	pHIT000108675	0	+	3278896	3284645	0	3	75,74,811	0,371,4938
chr10	3279463	3281388	HIT000429894	0	-	3279463	3281388	0	2	1083,140	0,1785
chr10	3281671	3284344	REMC_BreastStem.8935	0	+	3281671	3284344	0	2	81,510	0,2163
chr10	3283476	3284341	REMC_LuminalBreast.17332	0	.	3283476	3284341	0	1	865	0
chr10	3283821	3284361	REMC_MyoepithelialBreast.16211	0	.	3283821	3284361	0	1	540	0
chr10	3289345	3290131	brain_AmbionMAQC.7600	0	.	3289345	3290131	0	1	786	0
chr10	3318774	3323819	prostate_carcinoma.16192	0	.	3318774	3323819	0	1	5045	0
chr10	3319504	3321736	prostate_normal.9710	0	.	3319504	3321736	0	1	2232	0
chr10	3321911	3322728	prostate_normal.9711	0	.	3321911	3322728	0	1	817	0
chr10	3324109	3327084	prostate_carcinoma.16193	0	.	3324109	3327084	0	1	2975	0
chr10	3325361	3327061	prostate_normal.9712	0	.	3325361	3327061	0	1	1700	0
chr10	3350047	3351040	K562.8253	0	.	3350047	3351040	0	1	993	0
chr10	3374089	3374946	K562.8254	0	.	3374089	3374946	0	1	857	0
chr10	3487408	3487729	A549_Myers.11681	0	.	3487408	3487729	0	1	321	0
chr10	3493005	3495502	REMC_LuminalBreast.17333	0	.	3493005	3495502	0	1	2497	0
chr10	3498701	3500041	REMC_LuminalBreast.17335	0	.	3498701	3500041	0	1	1340	0
chr10	3499077	3499727	prostate_carcinoma.16201	0	.	3499077	3499727	0	1	650	0
chr10	3499604	3499995	A549_Myers.11682	0	.	3499604	3499995	0	1	391	0
chr10	3514285	3514978	B_Cells_Pritchard.514491	0	.	3514285	3514978	0	1	693	0
chr10	3516140	3521338	B_Cells_Pritchard.514497	0	.	3516140	3521338	0	1	5198	0
chr10	3517562	3518622	REMC_LuminalBreast.17339	0	.	3517562	3518622	0	1	1060	0
chr10	3546713	3547152	A549_Myers.11685	0	.	3546713	3547152	0	1	439	0
chr10	3562488	3562791	A549_Myers.11687	0	.	3562488	3562791	0	1	303	0
chr10	3562538	3565048	pHIT000108677	0	+	3562538	3565048	0	2	230,91	0,2419
chr10	3564284	3569223	Rinn_00017904	0	-	3564284	3569223	0	2	178,254	0,4685
chr10	3638717	3639597	REMC_MyoepithelialBreast.16216	0	.	3638717	3639597	0	1	880	0
chr10	3680846	3681253	A549_Myers.11694	0	.	3680846	3681253	0	1	407	0
chr10	3699172	3699766	K562.8260	0	.	3699172	3699766	0	1	594	0
chr10	3734440	3800673	pHIT000108678	0	-	3734440	3800673	0	6	141,93,156,156,97,149	0,7917,17201,18478,65688,66084
chr10	3734440	3780793	pHIT000108679	0	-	3734440	3780793	0	5	141,93,156,41,46	0,7917,17201,18478,46307
chr10	3766542	3767093	B_cells_Cheung.32345	0	.	3766542	3767093	0	1	551	0
chr10	3767237	3767686	A549_Myers.11695	0	.	3767237	3767686	0	1	449	0
chr10	3767497	3767951	B_cells_Cheung.32346	0	.	3767497	3767951	0	1	454	0
chr10	3773606	3775910	REMC_LuminalBreast.17345	0	.	3773606	3775910	0	1	2304	0
chr10	3773844	3775342	REMC_MyoepithelialBreast.16223	0	.	3773844	3775342	0	1	1498	0
chr10	3784088	3784623	REMC_MyoepithelialBreast.16226	0	.	3784088	3784623	0	1	535	0
chr10	3789617	3790300	B_cells_Cheung.32362	0	-	3789617	3790300	0	2	163,149	0,534
chr10	3794607	3800375	REMC_BreastStem.9322	0	.	3794607	3800375	0	1	5768	0
chr10	3794607	3801917	REMC_BreastStem.9323	0	-	3794607	3801917	0	2	3592,2929	0,4381
chr10	3824036	3827246	REMC_LuminalBreast.17358	0	.	3824036	3827246	0	1	3210	0
chr10	3829140	3830727	REMC_LuminalBreast.17359	0	.	3829140	3830727	0	1	1587	0
chr10	3833859	3835115	REMC_LuminalBreast.17360	0	.	3833859	3835115	0	1	1256	0
chr10	3837130	3844646	REMC_LuminalBreast.17362	0	.	3837130	3844646	0	1	7516	0
chr10	3840252	3843444	REMC_MyoepithelialBreast.16240	0	.	3840252	3843444	0	1	3192	0
chr10	3840345	3841791	HepG2_Caltech_ENCODE.6155	0	.	3840345	3841791	0	1	1446	0
chr10	3851888	3853242	REMC_LuminalBreast.17365	0	.	3851888	3853242	0	1	1354	0
chr10	3860248	3860867	A549_Myers.11701	0	.	3860248	3860867	0	1	619	0
chr10	3906963	3907484	B_cells_Cheung.32375	0	.	3906963	3907484	0	1	521	0
chr10	3943341	3947980	REMC_MyoepithelialBreast.16243	0	.	3943341	3947980	0	1	4639	0
chr10	3944227	3944593	prostate_carcinoma.16208	0	.	3944227	3944593	0	1	366	0
chr10	3962975	3966670	prostate_carcinoma.16214	0	.	3962975	3966670	0	1	3695	0
chr10	3964472	3965599	prostate_normal.9719	0	.	3964472	3965599	0	1	1127	0
chr10	3969476	3970738	prostate_carcinoma.16216	0	.	3969476	3970738	0	1	1262	0
chr10	3974418	3974887	REMC_BreastStem.8965	0	.	3974418	3974887	0	1	469	0
chr10	3975248	3981577	MDAMB231_Thompson.3924	0	+	3975248	3981577	0	2	158,877	0,5452
chr10	4007246	4083957	pHIT000108683	0	+	4007246	4083957	0	5	273,82,81,95,49	0,29557,30477,41919,76662
chr10	4040228	4041181	MeI_Garraway.3135	0	.	4040228	4041181	0	1	953	0
chr10	4083917	4121205	HIT000012417	0	-	4083917	4121205	0	4	432,97,103,1655	0,33471,33880,35633
chr10	4164178	4164902	BT474_Burge_Thompson.5470	0	.	4164178	4164902	0	1	724	0
chr10	4164249	4164665	B_Cells_Pritchard.516253	0	.	4164249	4164665	0	1	416	0
chr10	4164291	4164953	CD4_Plagnol_activated.11296	0	.	4164291	4164953	0	1	662	0
chr10	4232827	4275957	Rinn_00018416	0	-	4232827	4275957	0	2	6531,263	0,42867
chr10	4233316	4235473	MCF10A_Thompson.3945	0	.	4233316	4235473	0	1	2157	0
chr10	4233346	4234178	colon_Burge.6502	0	.	4233346	4234178	0	1	832	0
chr10	4233352	4234328	prostate_carcinoma.16218	0	.	4233352	4234328	0	1	976	0
chr10	4233650	4234081	heart_Burge.5144	0	.	4233650	4234081	0	1	431	0
chr10	4234106	4235003	REMC_BreastStem.8967	0	.	4234106	4235003	0	1	897	0
chr10	4234538	4235509	MDAMB468_Thompson.4491	0	.	4234538	4235509	0	1	971	0
chr10	4234703	4235387	REMC_MyoepithelialBreast.16246	0	.	4234703	4235387	0	1	684	0
chr10	4234717	4235176	adipose_Burge.6480	0	.	4234717	4235176	0	1	459	0
chr10	4235614	4275871	MCF10A_Thompson.3946	0	-	4235614	4275871	0	2	3744,176	0,40081
chr10	4238129	4238948	skeletal_muscle_Burge.5120	0	.	4238129	4238948	0	1	819	0
chr10	4238262	4238955	colon_Burge.6508	0	.	4238262	4238955	0	1	693	0
chr10	4238384	4238982	IMR90_UCSD_REMC.8509	0	+	4238384	4238982	0	1	598	0
chr10	4263709	4264348	melanoma_Garraway_short_term_cultures.11949	0	.	4263709	4264348	0	1	639	0
chr10	4273703	4276580	REMC_MyoepithelialBreast.16248	0	.	4273703	4276580	0	1	2877	0
chr10	4283282	4285849	MeI_Garraway.3141	0	.	4283282	4285849	0	1	2567	0
chr10	4283339	4285830	MeWo_Garraway.6061	0	.	4283339	4285830	0	1	2491	0
chr10	4283798	4285841	melanoma_Garraway_short_term_cultures.11951	0	.	4283798	4285841	0	1	2043	0
chr10	4290987	4291691	melanoma_Garraway_short_term_cultures.11954	0	.	4290987	4291691	0	1	704	0
chr10	4293409	4294201	MeI_Garraway.3139	0	.	4293409	4294201	0	1	792	0
chr10	4297839	4298303	MeWo_Garraway.6066	0	.	4297839	4298303	0	1	464	0
chr10	4401733	4440823	pHIT000017195	0	+	4401733	4440823	0	4	165,209,52,177	0,14727,29658,38913
chr10	4401733	4440726	pHIT000083575	0	+	4401733	4440726	0	4	165,209,44,80	0,14727,17797,38913
chr10	4401733	4440823	pHIT000108686	0	+	4401733	4440823	0	2	165,177	0,38913
chr10	4416436	4442804	Rinn_00017699	0	+	4416436	4442804	0	2	233,2159	0,24209
chr10	4472197	4472522	XR_078742	0	-	4472197	4472522	0	1	325	0
chr10	4629340	4629675	A549_Myers.11708	0	.	4629340	4629675	0	1	335	0
chr10	4675974	4676543	MDAMB231_Thompson.3931	0	.	4675974	4676543	0	1	569	0
chr10	4681926	4683528	MDAMB231_Thompson.3937	0	.	4681926	4683528	0	1	1602	0
chr10	4682254	4683396	MDAMB468_Thompson.4536	0	.	4682254	4683396	0	1	1142	0
chr10	4682285	4683418	MCF10A_Thompson.3955	0	.	4682285	4683418	0	1	1133	0
chr10	4682354	4683584	HepG2_Caltech_ENCODE.6157	0	.	4682354	4683584	0	1	1230	0
chr10	4687618	4694611	ENST00000417883	0	+	4687618	4694611	0	3	894,130,721	0,4555,6272
chr10	4687618	4694640	HIT000096432	0	+	4687618	4694640	0	3	894,130,750	0,4555,6272
chr10	4688347	4694398	HIT000390027	0	+	4688347	4694398	0	3	165,130,508	0,3826,5543
chr10	4688347	4694606	NR_015425	0	+	4688347	4694606	0	3	165,130,716	0,3826,5543
chr10	4688347	4694390	HIT000337830	0	+	4688347	4694390	0	3	165,130,500	0,3826,5543
chr10	4695654	4696563	REMC_MyoepithelialBreast.16255	0	.	4695654	4696563	0	1	909	0
chr10	4737594	4738368	MDAMB468_Thompson.4543	0	.	4737594	4738368	0	1	774	0
chr10	4749666	4751663	MDAMB468_Thompson.4548	0	.	4749666	4751663	0	1	1997	0
chr10	4788279	4788633	IMR90_UCSD_REMC.8517	0	+	4788279	4788633	0	1	354	0
chr10	4791209	4794788	MDAMB231_Thompson.3950	0	.	4791209	4794788	0	1	3579	0
chr10	4791230	4794774	melanoma_Garraway_short_term_cultures.11965	0	.	4791230	4794774	0	1	3544	0
chr10	5326114	5326534	pHIT000017207	0	+	5326114	5326534	0	1	420	0
chr10	5327344	5328059	REMC_LuminalBreast.17454	0	.	5327344	5328059	0	1	715	0
chr10	5345820	5347704	REMC_LuminalBreast.17458	0	.	5345820	5347704	0	1	1884	0
chr10	5356400	5356800	CD4_Plagnol_resting.11028	0	.	5356400	5356800	0	1	400	0
chr10	5412854	5413455	B_Cells_Pritchard.518621	0	.	5412854	5413455	0	1	601	0
chr10	5413254	5413562	prostate_carcinoma.16254	0	.	5413254	5413562	0	1	308	0
chr10	5413261	5413739	BT474_Burge_Thompson.5472	0	.	5413261	5413739	0	1	478	0
chr10	5494669	5495887	BT474_Burge_Thompson.5542	0	.	5494669	5495887	0	1	1218	0
chr10	5496391	5497833	K562.11273	0	.	5496391	5497833	0	1	1442	0
chr10	5496601	5497890	REMC_BreastStem.9035	0	.	5496601	5497890	0	1	1289	0
chr10	5498170	5502904	REMC_LuminalBreast.17460	0	.	5498170	5502904	0	1	4734	0
chr10	5498334	5499601	K562.11274	0	.	5498334	5499601	0	1	1267	0
chr10	5499176	5500800	MIP101.11293	0	.	5499176	5500800	0	1	1624	0
chr10	5500394	5501888	K562.11276	0	.	5500394	5501888	0	1	1494	0
chr10	5500542	5502802	REMC_BreastStem.9036	0	.	5500542	5502802	0	1	2260	0
chr10	5501233	5502320	MIP101.11294	0	.	5501233	5502320	0	1	1087	0
chr10	5502463	5521732	pHIT000017211	0	+	5502463	5521732	0	4	86,72,110,224	0,9896,14749,19045
chr10	5503159	5503902	K562.11278	0	.	5503159	5503902	0	1	743	0
chr10	5510844	5511710	K562.11284	0	.	5510844	5511710	0	1	866	0
chr10	5511571	5512054	BT474_Burge_Thompson.5543	0	.	5511571	5512054	0	1	483	0
chr10	5511638	5512146	B_cells_Cheung.32425	0	.	5511638	5512146	0	1	508	0
chr10	5511698	5512078	A549_Myers.11776	0	.	5511698	5512078	0	1	380	0
chr10	5512004	5512861	B_Cells_Pritchard.518803	0	.	5512004	5512861	0	1	857	0
chr10	5513212	5521064	REMC_LuminalBreast.17463	0	.	5513212	5521064	0	1	7852	0
chr10	5513476	5525906	MCF7_Burge_Thompson.5235	0	-	5513476	5525906	0	2	8976,454	0,11976
chr10	5513537	5519651	K562.8358	0	.	5513537	5519651	0	1	6114	0
chr10	5513611	5515018	BT474_Burge_Thompson.5544	0	.	5513611	5515018	0	1	1407	0
chr10	5515140	5521150	BT474_Burge_Thompson.5549	0	.	5515140	5521150	0	1	6010	0
chr10	5515140	5522429	BT474_Burge_Thompson.5550	0	+	5515140	5522429	0	2	4859,1201	0,6088
chr10	5515172	5518597	MDAMB468_Thompson.4505	0	.	5515172	5518597	0	1	3425	0
chr10	5515328	5519651	K562.8359	0	-	5515328	5519651	0	2	3269,190	0,4133
chr10	5515489	5525914	MIP101.11295	0	-	5515489	5525914	0	4	2979,451,2224,462	0,4066,4739,9963
chr10	5515646	5522940	MIP101.11296	0	+	5515646	5522940	0	2	4359,1712	0,5582
chr10	5515805	5518714	H1_polyA+.19237	0	.	5515805	5518714	0	1	2909	0
chr10	5516496	5522454	ZR751_Thompson.4432	0	.	5516496	5522454	0	1	5958	0
chr10	5516579	5518554	HIT000024637	0	-	5516579	5518554	0	1	1975	0
chr10	5516764	5518763	BT20_Thompson.3856	0	.	5516764	5518763	0	1	1999	0
chr10	5517767	5519359	prostate_carcinoma.16259	0	.	5517767	5519359	0	1	1592	0
chr10	5517981	5519030	MCF10A_Thompson.3964	0	.	5517981	5519030	0	1	1049	0
chr10	5520057	5520808	MDAMB468_Thompson.4507	0	.	5520057	5520808	0	1	751	0
chr10	5520135	5521146	BT20_Thompson.3858	0	.	5520135	5521146	0	1	1011	0
chr10	5520315	5520624	A549_Myers.11777	0	.	5520315	5520624	0	1	309	0
chr10	5521076	5522013	prostate_carcinoma.16260	0	.	5521076	5522013	0	1	937	0
chr10	5521134	5522261	REMC_LuminalBreast.17464	0	.	5521134	5522261	0	1	1127	0
chr10	5522707	5523147	BT474_Burge_Thompson.5551	0	.	5522707	5523147	0	1	440	0
chr10	5532804	5533151	A549_Myers.11779	0	.	5532804	5533151	0	1	347	0
chr10	5538674	5539018	A549_Myers.11780	0	.	5538674	5539018	0	1	344	0
chr10	5539567	5540012	A549_Myers.11781	0	.	5539567	5540012	0	1	445	0
chr10	5542321	5544913	prostate_carcinoma.16261	0	.	5542321	5544913	0	1	2592	0
chr10	5543184	5545580	MCF7_Burge_Thompson.5218	0	.	5543184	5545580	0	1	2396	0
chr10	5543374	5544678	HME_Burge.7246	0	.	5543374	5544678	0	1	1304	0
chr10	5543962	5545782	REMC_MyoepithelialBreast.16304	0	.	5543962	5545782	0	1	1820	0
chr10	5544186	5545756	MDAMB468_Thompson.4509	0	.	5544186	5545756	0	1	1570	0
chr10	5559580	5560248	BT474_Burge_Thompson.5478	0	.	5559580	5560248	0	1	668	0
chr10	5560654	5561306	MCF7_Burge_Thompson.5221	0	.	5560654	5561306	0	1	652	0
chr10	5560892	5561641	BT474_Burge_Thompson.5479	0	.	5560892	5561641	0	1	749	0
chr10	5563818	5564634	BT474_Burge_Thompson.5480	0	.	5563818	5564634	0	1	816	0
chr10	5565079	5565830	BT474_Burge_Thompson.5481	0	.	5565079	5565830	0	1	751	0
chr10	5566504	5567477	REMC_MyoepithelialBreast.16305	0	.	5566504	5567477	0	1	973	0
chr10	5566516	5567431	REMC_LuminalBreast.17467	0	.	5566516	5567431	0	1	915	0
chr10	5569278	5570276	BT474_Burge_Thompson.5482	0	.	5569278	5570276	0	1	998	0
chr10	5569872	5570228	MDAMB468_Thompson.4514	0	.	5569872	5570228	0	1	356	0
chr10	5571686	5572735	BT474_Burge_Thompson.5483	0	.	5571686	5572735	0	1	1049	0
chr10	5578057	5579054	BT474_Burge_Thompson.5485	0	.	5578057	5579054	0	1	997	0
chr10	5578107	5579087	A549_Myers.11790	0	.	5578107	5579087	0	1	980	0
chr10	5581589	5582847	Rinn_00018419	0	-	5581589	5582847	0	2	755,242	0,1016
chr10	5581610	5586344	prostate_carcinoma.16267	0	.	5581610	5586344	0	1	4734	0
chr10	5581610	5605522	prostate_carcinoma.16266	0	+	5581610	5605522	0	2	4676,167	0,23745
chr10	5581693	5582347	brain_AmbionMAQC.7633	0	.	5581693	5582347	0	1	654	0
chr10	5581806	5582452	ZR751_Thompson.4436	0	.	5581806	5582452	0	1	646	0
chr10	5589785	5590593	A549_Myers.11794	0	.	5589785	5590593	0	1	808	0
chr10	5595988	5596405	A549_Myers.11796	0	.	5595988	5596405	0	1	417	0
chr10	5607790	5608207	A549_Myers.11799	0	.	5607790	5608207	0	1	417	0
chr10	5619065	5619515	A549_Myers.11801	0	.	5619065	5619515	0	1	450	0
chr10	6025002	6028550	B_cells_Cheung.32787	0	.	6025002	6028550	0	1	3548	0
chr10	6025201	6028197	REMC_LuminalBreast.17496	0	-	6025201	6028197	0	2	557,574	0,2422
chr10	6025518	6027975	MDAMB468_Thompson.4565	0	-	6025518	6027975	0	3	240,109,352	0,257,2105
chr10	6027643	6028404	B_Cells_Pritchard.520329	0	-	6027643	6028404	0	1	761	0
chr10	6028823	6030068	B_Cells_Pritchard.520333	0	-	6028823	6030068	0	3	636,223,303	0,719,942
chr10	6028823	6030068	B_Cells_Pritchard.520335	0	+	6028823	6030068	0	1	1245	0
chr10	6156329	6157577	B_Cells_Pritchard.520263	0	.	6156329	6157577	0	1	1248	0
chr10	6201181	6204654	B_Cells_Pritchard.520571	0	+	6201181	6204654	0	2	2621,63	0,3410
chr10	6201357	6203259	REMC_BreastStem.9076	0	.	6201357	6203259	0	1	1902	0
chr10	6203642	6223621	REMC_BreastStem.9077	0	-	6203642	6223621	0	3	339,129,635	0,4282,19344
chr10	6205320	6205928	B_cells_Cheung.32517	0	.	6205320	6205928	0	1	608	0
chr10	6208906	6212624	B_cells_Cheung.32514	0	.	6208906	6212624	0	1	3718	0
chr10	6210096	6210610	skeletal_muscle_Burge.5159	0	.	6210096	6210610	0	1	514	0
chr10	6212693	6214140	B_cells_Cheung.32520	0	.	6212693	6214140	0	1	1447	0
chr10	6212772	6213756	B_Cells_Pritchard.520353	0	.	6212772	6213756	0	1	984	0
chr10	6214357	6226158	B_Cells_Pritchard.520359	0	-	6214357	6226158	0	2	316,3071	0,8730
chr10	6216124	6217024	B_Cells_Pritchard.520363	0	+	6216124	6217024	0	1	900	0
chr10	6217679	6218712	B_Cells_Pritchard.520367	0	+	6217679	6218712	0	1	1033	0
chr10	6221410	6225527	B_cells_Cheung.32515	0	+	6221410	6225527	0	2	1911,2104	0,2013
chr10	6222095	6222919	A549_Myers.11878	0	.	6222095	6222919	0	1	824	0
chr10	6223443	6225514	MIP101.11420	0	.	6223443	6225514	0	1	2071	0
chr10	6318900	6319440	A549_Myers.11909	0	.	6318900	6319440	0	1	540	0
chr10	6320227	6322212	REMC_LuminalBreast.17755	0	.	6320227	6322212	0	1	1985	0
chr10	6320518	6322889	REMC_BreastStem.9909	0	.	6320518	6322889	0	1	2371	0
chr10	6326176	6326545	T47D_Burge_Thompson.5028	0	.	6326176	6326545	0	1	369	0
chr10	6330614	6332422	REMC_LuminalBreast.17759	0	.	6330614	6332422	0	1	1808	0
chr10	6331148	6332399	H1_polyA+.19347	0	.	6331148	6332399	0	1	1251	0
chr10	6331157	6331814	B_Cells_Pritchard.520621	0	.	6331157	6331814	0	1	657	0
chr10	6331161	6332303	REMC_BreastStem.9913	0	.	6331161	6332303	0	1	1142	0
chr10	6331299	6331725	CD4_Plagnol_activated.11450	0	.	6331299	6331725	0	1	426	0
chr10	6335243	6344115	REMC_MyoepithelialBreast.16371	0	.	6335243	6344115	0	1	8872	0
chr10	6335315	6335721	B_Cells_Pritchard.520631	0	.	6335315	6335721	0	1	406	0
chr10	6335982	6336663	B_Cells_Pritchard.520633	0	.	6335982	6336663	0	1	681	0
chr10	6335983	6336572	CD4_Plagnol_resting.11137	0	.	6335983	6336572	0	1	589	0
chr10	6336003	6336574	CD4_Plagnol_activated.11451	0	.	6336003	6336574	0	1	571	0
chr10	6336030	6336575	MIP101.11451	0	.	6336030	6336575	0	1	545	0
chr10	6336145	6336571	K562.8412	0	.	6336145	6336571	0	1	426	0
chr10	6336171	6336588	HepG2_Caltech_ENCODE.6233	0	.	6336171	6336588	0	1	417	0
chr10	6336852	6342116	B_Cells_Pritchard.520635	0	+	6336852	6342116	0	2	81,4497	0,767
chr10	6337218	6337967	REMC_BreastStem.9096	0	.	6337218	6337967	0	1	749	0
chr10	6337336	6343639	B_cells_Cheung.32930	0	.	6337336	6343639	0	1	6303	0
chr10	6337339	6338132	REMC_LuminalBreast.17516	0	.	6337339	6338132	0	1	793	0
chr10	6337363	6340141	H1_polyA+.19350	0	.	6337363	6340141	0	1	2778	0
chr10	6337372	6342116	B_Cells_Pritchard.520637	0	-	6337372	6342116	0	2	4121,526	0,4218
chr10	6337493	6338064	prostate_carcinoma.16470	0	.	6337493	6338064	0	1	571	0
chr10	6338027	6342631	REMC_BreastStem.9097	0	.	6338027	6342631	0	1	4604	0
chr10	6338241	6342342	REMC_LuminalBreast.17517	0	.	6338241	6342342	0	1	4101	0
chr10	6340106	6341442	MIP101.11452	0	.	6340106	6341442	0	1	1336	0
chr10	6340252	6342125	H1_polyA+.19351	0	.	6340252	6342125	0	1	1873	0
chr10	6340390	6341742	melanoma_Garraway_short_term_cultures.12096	0	.	6340390	6341742	0	1	1352	0
chr10	6341045	6341519	prostate_carcinoma.16472	0	.	6341045	6341519	0	1	474	0
chr10	6341753	6343981	HIT000018416	0	+	6341753	6343981	0	1	2228	0
chr10	6343647	6344180	REMC_LuminalBreast.17519	0	.	6343647	6344180	0	1	533	0
chr10	6347237	6347907	REMC_MyoepithelialBreast.16373	0	.	6347237	6347907	0	1	670	0
chr10	6347275	6347920	REMC_LuminalBreast.17523	0	.	6347275	6347920	0	1	645	0
chr10	6347307	6348955	B_cells_Cheung.32936	0	.	6347307	6348955	0	1	1648	0
chr10	6347323	6347860	H1_polyA+.19356	0	.	6347323	6347860	0	1	537	0
chr10	6352086	6359228	B_cells_Cheung.32939	0	.	6352086	6359228	0	1	7142	0
chr10	6356202	6357070	REMC_MyoepithelialBreast.16378	0	.	6356202	6357070	0	1	868	0
chr10	6356475	6357398	B_Cells_Pritchard.520663	0	.	6356475	6357398	0	1	923	0
chr10	6420212	6423277	H1_polyA+.19382	0	.	6420212	6423277	0	1	3065	0
chr10	6420305	6422092	B_cells_Cheung.32543	0	.	6420305	6422092	0	1	1787	0
chr10	6421559	6422056	prostate_carcinoma.16483	0	.	6421559	6422056	0	1	497	0
chr10	6424705	6428869	B_cells_Cheung.32546	0	.	6424705	6428869	0	1	4164	0
chr10	6424729	6425361	liver_polyA+.22860	0	.	6424729	6425361	0	1	632	0
chr10	6424732	6431273	H1_polyA+.19384	0	.	6424732	6431273	0	1	6541	0
chr10	6424795	6426602	prostate_carcinoma.16486	0	.	6424795	6426602	0	1	1807	0
chr10	6424830	6427520	B_Cells_Pritchard.520883	0	.	6424830	6427520	0	1	2690	0
chr10	6425185	6425853	brain_AmbionMAQC.7691	0	.	6425185	6425853	0	1	668	0
chr10	6425215	6426136	REMC_MyoepithelialBreast.16390	0	.	6425215	6426136	0	1	921	0
chr10	6425815	6426587	MCF7_Burge_Thompson.5250	0	.	6425815	6426587	0	1	772	0
chr10	6426219	6427444	REMC_MyoepithelialBreast.16391	0	.	6426219	6427444	0	1	1225	0
chr10	6430260	6430684	CD4_Snyder.13036	0	.	6430260	6430684	0	1	424	0
chr10	6433205	6434229	HepG2_Caltech_ENCODE.6234	0	.	6433205	6434229	0	1	1024	0
chr10	6433342	6434570	prostate_carcinoma.16489	0	.	6433342	6434570	0	1	1228	0
chr10	6433440	6433978	CD4_Plagnol_resting.11139	0	.	6433440	6433978	0	1	538	0
chr10	6438030	6438864	H1_polyA+.19388	0	.	6438030	6438864	0	1	834	0
chr10	6459305	6460203	H1_polyA+.19394	0	.	6459305	6460203	0	1	898	0
chr10	6463242	6469472	H1_polyA+.19396	0	.	6463242	6469472	0	1	6230	0
chr10	6466278	6467699	B_cells_Cheung.32554	0	.	6466278	6467699	0	1	1421	0
chr10	6466804	6468015	B_Cells_Pritchard.521035	0	.	6466804	6468015	0	1	1211	0
chr10	6467760	6469623	B_cells_Cheung.32555	0	.	6467760	6469623	0	1	1863	0
chr10	6468126	6469396	B_Cells_Pritchard.521037	0	.	6468126	6469396	0	1	1270	0
chr10	6468278	6469399	REMC_LuminalBreast.17541	0	.	6468278	6469399	0	1	1121	0
chr10	6468443	6469264	brain_AmbionMAQC.7702	0	.	6468443	6469264	0	1	821	0
chr10	6468495	6469221	REMC_BreastStem.9106	0	.	6468495	6469221	0	1	726	0
chr10	6468708	6469462	REMC_MyoepithelialBreast.16396	0	.	6468708	6469462	0	1	754	0
chr10	6468838	6469361	melanoma_Garraway_short_term_cultures.12108	0	.	6468838	6469361	0	1	523	0
chr10	6469747	6471460	B_cells_Cheung.32556	0	.	6469747	6471460	0	1	1713	0
chr10	6475822	6477036	CD4_Plagnol_resting.11144	0	.	6475822	6477036	0	1	1214	0
chr10	6475824	6476897	prostate_carcinoma.16491	0	.	6475824	6476897	0	1	1073	0
chr10	6475895	6476617	CD4_Plagnol_activated.11454	0	.	6475895	6476617	0	1	722	0
chr10	6481861	6482190	liver_polyA+.22868	0	.	6481861	6482190	0	1	329	0
chr10	6484124	6488486	H1_polyA+.19401	0	.	6484124	6488486	0	1	4362	0
chr10	6484138	6484781	B_cells_Cheung.32568	0	.	6484138	6484781	0	1	643	0
chr10	6484164	6484665	prostate_carcinoma.16497	0	.	6484164	6484665	0	1	501	0
chr10	6484243	6484680	B_Cells_Pritchard.521109	0	.	6484243	6484680	0	1	437	0
chr10	6484256	6484689	melanoma_Garraway_short_term_cultures.12111	0	.	6484256	6484689	0	1	433	0
chr10	6484856	6486930	B_cells_Cheung.32569	0	.	6484856	6486930	0	1	2074	0
chr10	6484871	6488206	CD4_Plagnol_resting.11211	0	.	6484871	6488206	0	1	3335	0
chr10	6484988	6485523	brain_AmbionMAQC.7713	0	.	6484988	6485523	0	1	535	0
chr10	6484994	6492860	H9_polyA+.7982	0	+	6484994	6492860	0	2	616,18	0,7848
chr10	6486442	6487104	melanoma_Garraway_short_term_cultures.12113	0	.	6486442	6487104	0	1	662	0
chr10	6486685	6487109	CD4_Plagnol_activated.11460	0	.	6486685	6487109	0	1	424	0
chr10	6487225	6488176	B_Cells_Pritchard.521121	0	.	6487225	6488176	0	1	951	0
chr10	6487228	6488440	prostate_carcinoma.16499	0	.	6487228	6488440	0	1	1212	0
chr10	6487246	6487928	melanoma_Garraway_short_term_cultures.12114	0	.	6487246	6487928	0	1	682	0
chr10	6487553	6488109	H9_polyA+.7983	0	.	6487553	6488109	0	1	556	0
chr10	6487557	6487869	liver_polyA+.22873	0	.	6487557	6487869	0	1	312	0
chr10	6487598	6488046	prostate_normal.9849	0	.	6487598	6488046	0	1	448	0
chr10	6488573	6489869	CD4_Plagnol_activated.11463	0	.	6488573	6489869	0	1	1296	0
chr10	6488634	6490139	H1_polyA+.19402	0	.	6488634	6490139	0	1	1505	0
chr10	6489232	6490392	CD4_Plagnol_resting.11212	0	.	6489232	6490392	0	1	1160	0
chr10	6489329	6489802	prostate_carcinoma.16500	0	.	6489329	6489802	0	1	473	0
chr10	6490669	6491258	CD4_Plagnol_resting.11213	0	.	6490669	6491258	0	1	589	0
chr10	6497431	6501993	H1_polyA+.19410	0	.	6497431	6501993	0	1	4562	0
chr10	6498909	6501999	CD4_Plagnol_resting.11217	0	.	6498909	6501999	0	1	3090	0
chr10	6504278	6507231	H1_polyA+.19413	0	.	6504278	6507231	0	1	2953	0
chr10	6504794	6505797	CD4_Plagnol_resting.11220	0	.	6504794	6505797	0	1	1003	0
chr10	6505916	6507216	CD4_Plagnol_resting.11221	0	.	6505916	6507216	0	1	1300	0
chr10	6506239	6506910	K562.8437	0	.	6506239	6506910	0	1	671	0
chr10	6506366	6507183	CD4_Plagnol_activated.11470	0	.	6506366	6507183	0	1	817	0
chr10	6662805	6665868	skeletal_muscle_Burge.5169	0	+	6662805	6665868	0	2	90,225	0,2838
chr10	6663695	6664166	A549_Myers.11941	0	.	6663695	6664166	0	1	471	0
chr10	6664101	6666262	H1_rRNA-depleted_UCSD_REMC.15454	0	+	6664101	6666262	0	2	68,619	0,1542
chr10	6665645	6666266	Rinn_00017777	0	+	6665645	6666266	0	2	241,182	0,439
chr10	6669726	6671546	REMC_MyoepithelialBreast.16410	0	.	6669726	6671546	0	1	1820	0
chr10	6670816	6672764	CD4_Plagnol_resting.11200	0	.	6670816	6672764	0	1	1948	0
chr10	6670853	6672563	CD4_Snyder.13091	0	.	6670853	6672563	0	1	1710	0
chr10	6671006	6671606	brain_AmbionMAQC.7708	0	.	6671006	6671606	0	1	600	0
chr10	6686469	6687351	H1_polyA+.19447	0	.	6686469	6687351	0	1	882	0
chr10	6688160	6688673	CD4_Plagnol_activated.11632	0	.	6688160	6688673	0	1	513	0
chr10	6700683	6721758	HIT000306708	0	+	6700683	6721758	0	6	61,256,153,83,1448,1478	0,2202,2994,6601,8214,19597
chr10	6709004	6709762	H1_polyA+.19455	0	.	6709004	6709762	0	1	758	0
chr10	6709278	6710296	CD4_Snyder.13077	0	.	6709278	6710296	0	1	1018	0
chr10	6709279	6710292	CD4_Plagnol_resting.11182	0	.	6709279	6710292	0	1	1013	0
chr10	6709306	6710275	prostate_carcinoma.16521	0	.	6709306	6710275	0	1	969	0
chr10	6726872	6727755	H1_polyA+.19459	0	.	6726872	6727755	0	1	883	0
chr10	6819274	6820975	HeLa_polyA+_Chen.6318	0	+	6819274	6820975	0	2	322,651	0,1050
chr10	6819302	6819649	H1_polyA+.19460	0	.	6819302	6819649	0	1	347	0
chr10	6819302	6821155	H1_polyA+.19461	0	+	6819302	6821155	0	2	294,831	0,1022
chr10	6861499	6862305	HeLa_polyA+_Chen.6319	0	.	6861499	6862305	0	1	806	0
chr10	6861527	6863456	Rinn_00018112	0	+	6861527	6863456	0	2	328,186	0,1743
chr10	6861527	6863452	A549_Myers.11950	0	+	6861527	6863452	0	2	328,181	0,1744
chr10	6867517	6868136	HeLa_polyA-_Chen.3374	0	.	6867517	6868136	0	1	619	0
chr10	6867529	6868073	melanoma_Garraway_short_term_cultures.12119	0	.	6867529	6868073	0	1	544	0
chr10	6867541	6868212	H9_polyA+.7997	0	.	6867541	6868212	0	1	671	0
chr10	6922072	6924853	H1_polyA+.19469	0	.	6922072	6924853	0	1	2781	0
chr10	6959267	6959597	A549_Myers.11954	0	.	6959267	6959597	0	1	330	0
chr10	6959850	6960767	HeLa_polyA+_Chen.6324	0	.	6959850	6960767	0	1	917	0
chr10	7001963	7002421	A549_Myers.11960	0	.	7001963	7002421	0	1	458	0
chr10	7009647	7010718	B_Cells_Pritchard.522317	0	.	7009647	7010718	0	1	1071	0
chr10	7057176	7058270	MeI_Garraway.3158	0	.	7057176	7058270	0	1	1094	0
chr10	7125173	7125561	A549_Myers.11961	0	.	7125173	7125561	0	1	388	0
chr10	7125609	7157356	pHIT000108721	0	+	7125609	7157356	0	3	126,61,305	0,28542,31442
chr10	7494892	7495432	prostate_normal.9871	0	.	7494892	7495432	0	1	540	0
chr10	7520200	7527124	pHIT000108728	0	+	7520200	7527124	0	3	52,139,217	0,4169,6707
chr10	7523480	7523840	B_cells_Cheung.32649	0	.	7523480	7523840	0	1	360	0
chr10	7526295	7555040	B_cells_Cheung.32653	0	-	7526295	7555040	0	4	744,2043,160,303	0,21156,25106,28442
chr10	7527524	7553910	Rinn_00017921	0	-	7527524	7553910	0	4	236,131,161,33	0,21839,23876,26353
chr10	7534969	7535837	B_Cells_Pritchard.523293	0	.	7534969	7535837	0	1	868	0
chr10	7544458	7547273	B_Cells_Pritchard.523315	0	.	7544458	7547273	0	1	2815	0
chr10	7544586	7547282	B_cells_Cheung.32665	0	.	7544586	7547282	0	1	2696	0
chr10	7547482	7552744	B_Cells_Pritchard.523325	0	-	7547482	7552744	0	2	2012,1343	0,3919
chr10	7557313	7557671	A549_Myers.12022	0	.	7557313	7557671	0	1	358	0
chr10	7590266	7590675	B_Cells_Pritchard.523427	0	.	7590266	7590675	0	1	409	0
chr10	7629733	7630142	HepG2_Caltech_ENCODE.6240	0	.	7629733	7630142	0	1	409	0
chr10	7631557	7632266	prostate_normal.9879	0	.	7631557	7632266	0	1	709	0
chr10	7639086	7639804	prostate_normal.9880	0	.	7639086	7639804	0	1	718	0
chr10	7639490	7639902	prostate_carcinoma.16642	0	.	7639490	7639902	0	1	412	0
chr10	8667830	8668906	prostate_carcinoma.16629	0	.	8667830	8668906	0	1	1076	0
chr10	9057467	9059277	MCF7_Burge_Thompson.5345	0	.	9057467	9059277	0	1	1810	0
chr10	9057674	9058147	T47D_Burge_Thompson.4875	0	.	9057674	9058147	0	1	473	0
chr10	9068751	9069587	T47D_Burge_Thompson.4880	0	.	9068751	9069587	0	1	836	0
chr10	9840751	9841206	ENST00000419836	0	-	9840751	9841206	0	2	185,159	0,296
chr10	9841967	9845573	K562.8507	0	.	9841967	9845573	0	1	3606	0
chr10	10161999	10165306	HIT000096621	0	+	10161999	10165306	0	1	3307	0
chr10	10174062	10175668	B_cells_Cheung.32753	0	.	10174062	10175668	0	1	1606	0
chr10	10183404	10184355	B_cells_Cheung.32756	0	.	10183404	10184355	0	1	951	0
chr10	10499063	10504652	pHIT000108743	0	-	10499063	10504652	0	4	150,48,106,86	0,799,4753,5503
chr10	11477812	11480797	HIT000045972	0	-	11477812	11480797	0	1	2985	0
chr10	11481533	11483230	REMC_LuminalBreast.17689	0	.	11481533	11483230	0	1	1697	0
chr10	11505427	11507762	REMC_LuminalBreast.17698	0	.	11505427	11507762	0	1	2335	0
chr10	11507903	11515223	REMC_LuminalBreast.17699	0	.	11507903	11515223	0	1	7320	0
chr10	11515573	11517201	REMC_MyoepithelialBreast.16580	0	.	11515573	11517201	0	1	1628	0
chr10	11515589	11518744	REMC_LuminalBreast.17700	0	.	11515589	11518744	0	1	3155	0
chr10	11518821	11523668	REMC_LuminalBreast.17701	0	.	11518821	11523668	0	1	4847	0
chr10	11526938	11528630	REMC_LuminalBreast.17703	0	.	11526938	11528630	0	1	1692	0
chr10	11528698	11530372	REMC_LuminalBreast.17704	0	.	11528698	11530372	0	1	1674	0
chr10	11530390	11534289	HIT000048298	0	-	11530390	11534289	0	1	3899	0
chr10	11530473	11535000	REMC_LuminalBreast.17705	0	.	11530473	11535000	0	1	4527	0
chr10	11533419	11534328	B_Cells_Pritchard.531761	0	.	11533419	11534328	0	1	909	0
chr10	11535091	11540672	REMC_LuminalBreast.17706	0	.	11535091	11540672	0	1	5581	0
chr10	11535694	11540648	B_cells_Cheung.32801	0	.	11535694	11540648	0	1	4954	0
chr10	11535887	11540653	H1_polyA+.19532	0	.	11535887	11540653	0	1	4766	0
chr10	11536235	11540637	MIP101.11530	0	.	11536235	11540637	0	1	4402	0
chr10	11536292	11540672	REMC_MyoepithelialBreast.16582	0	.	11536292	11540672	0	1	4380	0
chr10	11536965	11540663	HepG2_Caltech_ENCODE.6254	0	.	11536965	11540663	0	1	3698	0
chr10	11537855	11540614	ZR751_Thompson.4477	0	.	11537855	11540614	0	1	2759	0
chr10	11537864	11540633	prostate_carcinoma.16682	0	.	11537864	11540633	0	1	2769	0
chr10	11537886	11540636	MCF7_Burge_Thompson.5342	0	.	11537886	11540636	0	1	2750	0
chr10	11538124	11540632	melanoma_Garraway_short_term_cultures.12160	0	.	11538124	11540632	0	1	2508	0
chr10	11538197	11540650	B_Cells_Pritchard.531771	0	.	11538197	11540650	0	1	2453	0
chr10	11538263	11540521	K562.8518	0	.	11538263	11540521	0	1	2258	0
chr10	11538283	11540618	REMC_BreastStem.9152	0	.	11538283	11540618	0	1	2335	0
chr10	11538317	11540176	prostate_normal.9943	0	.	11538317	11540176	0	1	1859	0
chr10	11538332	11540638	BT474_Burge_Thompson.5575	0	.	11538332	11540638	0	1	2306	0
chr10	11538829	11539906	liver_polyA+.23086	0	.	11538829	11539906	0	1	1077	0
chr10	11539001	11540598	MDAMB468_Thompson.4594	0	.	11539001	11540598	0	1	1597	0
chr10	11539006	11539798	MDAMB231_Thompson.4001	0	.	11539006	11539798	0	1	792	0
chr10	11539006	11540588	T47D_Burge_Thompson.4924	0	.	11539006	11540588	0	1	1582	0
chr10	11539069	11539783	H1_rRNA-depleted_UCSD_REMC.15553	0	.	11539069	11539783	0	1	714	0
chr10	11539089	11540303	CD4_Plagnol_activated.11683	0	.	11539089	11540303	0	1	1214	0
chr10	11539107	11539695	MeWo_Garraway.6143	0	.	11539107	11539695	0	1	588	0
chr10	11539115	11539716	HeLa_polyA+_Chen.6340	0	.	11539115	11539716	0	1	601	0
chr10	11539260	11539808	CD4_Plagnol_resting.11339	0	.	11539260	11539808	0	1	548	0
chr10	11539310	11539735	testes_Burge.9202	0	.	11539310	11539735	0	1	425	0
chr10	11539316	11539741	A549_Myers.12085	0	.	11539316	11539741	0	1	425	0
chr10	11539358	11539724	IMR90_UCSD_REMC.8637	0	+	11539358	11539724	0	1	366	0
chr10	11725581	11725964	B_cells_Cheung.32874	0	.	11725581	11725964	0	1	383	0
chr10	11728296	11728813	B_Cells_Pritchard.532099	0	-	11728296	11728813	0	1	517	0
chr10	11741157	11741513	B_cells_Cheung.32878	0	.	11741157	11741513	0	1	356	0
chr10	11743377	11743719	B_Cells_Pritchard.532173	0	-	11743377	11743719	0	1	342	0
chr10	11747537	11747983	B_cells_Cheung.32883	0	.	11747537	11747983	0	1	446	0
chr10	11749177	11757074	B_Cells_Pritchard.532189	0	-	11749177	11757074	0	2	9,2164	0,5733
chr10	11754652	11757074	B_Cells_Pritchard.532187	0	+	11754652	11757074	0	1	2422	0
chr10	11754766	11757251	HIT000044036	0	-	11754766	11757251	0	1	2485	0
chr10	11754852	11757087	B_cells_Cheung.32885	0	.	11754852	11757087	0	1	2235	0
chr10	11764092	11768057	B_Cells_Pritchard.532245	0	-	11764092	11768057	0	3	1119,974,1594	0,1161,2371
chr10	11764262	11767328	B_cells_Cheung.32891	0	.	11764262	11767328	0	1	3066	0
chr10	11782243	11782807	prostate_carcinoma.16686	0	.	11782243	11782807	0	1	564	0
chr10	11791366	11791741	B_Cells_Pritchard.532347	0	.	11791366	11791741	0	1	375	0
chr10	11854740	11855986	REMC_LuminalBreast.17717	0	.	11854740	11855986	0	1	1246	0
chr10	11855194	11856064	REMC_MyoepithelialBreast.16612	0	.	11855194	11856064	0	1	870	0
chr10	11857312	11859051	REMC_LuminalBreast.17718	0	.	11857312	11859051	0	1	1739	0
chr10	11858344	11859362	REMC_MyoepithelialBreast.16614	0	.	11858344	11859362	0	1	1018	0
chr10	11860393	11862360	REMC_MyoepithelialBreast.16615	0	.	11860393	11862360	0	1	1967	0
chr10	11860442	11861444	REMC_LuminalBreast.17719	0	.	11860442	11861444	0	1	1002	0
chr10	11862556	11863737	REMC_MyoepithelialBreast.16616	0	.	11862556	11863737	0	1	1181	0
chr10	11864584	11865724	REMC_MyoepithelialBreast.16617	0	.	11864584	11865724	0	1	1140	0
chr10	11864683	11865639	REMC_BreastStem.9158	0	.	11864683	11865639	0	1	956	0
chr10	11869053	11870100	REMC_LuminalBreast.17720	0	.	11869053	11870100	0	1	1047	0
chr10	11869055	11870528	REMC_MyoepithelialBreast.16619	0	.	11869055	11870528	0	1	1473	0
chr10	11876323	11878117	REMC_MyoepithelialBreast.16622	0	.	11876323	11878117	0	1	1794	0
chr10	11876532	11877764	REMC_LuminalBreast.17721	0	.	11876532	11877764	0	1	1232	0
chr10	11877417	11877766	A549_Myers.12107	0	.	11877417	11877766	0	1	349	0
chr10	11879094	11880181	REMC_LuminalBreast.17722	0	.	11879094	11880181	0	1	1087	0
chr10	11881500	11882534	REMC_MyoepithelialBreast.16624	0	.	11881500	11882534	0	1	1034	0
chr10	11883894	11885349	REMC_LuminalBreast.17723	0	.	11883894	11885349	0	1	1455	0
chr10	11884303	11885192	REMC_MyoepithelialBreast.16601	0	.	11884303	11885192	0	1	889	0
chr10	11886171	11888146	REMC_MyoepithelialBreast.16603	0	.	11886171	11888146	0	1	1975	0
chr10	11886200	11886955	REMC_LuminalBreast.17724	0	.	11886200	11886955	0	1	755	0
chr10	11888251	11889166	REMC_MyoepithelialBreast.16604	0	.	11888251	11889166	0	1	915	0
chr10	11957542	11959079	REMC_LuminalBreast.17762	0	.	11957542	11959079	0	1	1537	0
chr10	11959063	11959669	A549_Myers.12120	0	.	11959063	11959669	0	1	606	0
chr10	11959641	11960245	REMC_LuminalBreast.17763	0	.	11959641	11960245	0	1	604	0
chr10	11961684	11962597	REMC_LuminalBreast.17765	0	.	11961684	11962597	0	1	913	0
chr10	11965853	11970431	K562.8620	0	.	11965853	11970431	0	1	4578	0
chr10	11966718	11967399	MeI_Garraway.3183	0	.	11966718	11967399	0	1	681	0
chr10	11967499	11976642	K562.8621	0	-	11967499	11976642	0	2	2459,456	0,8687
chr10	11967523	11968535	MeI_Garraway.3184	0	.	11967523	11968535	0	1	1012	0
chr10	11975493	11975824	A549_Myers.12126	0	.	11975493	11975824	0	1	331	0
chr10	11976178	11976696	MeI_Garraway.3187	0	.	11976178	11976696	0	1	518	0
chr10	11976830	11977952	K562.8626	0	.	11976830	11977952	0	1	1122	0
chr10	11978499	11979489	K562.8627	0	.	11978499	11979489	0	1	990	0
chr10	11990284	11991280	B_Cells_Pritchard.533177	0	.	11990284	11991280	0	1	996	0
chr10	11990353	11991004	A549_Myers.12129	0	.	11990353	11991004	0	1	651	0
chr10	11990513	11991238	MCF7_Burge_Thompson.5371	0	.	11990513	11991238	0	1	725	0
chr10	11990621	11991133	BT474_Burge_Thompson.5582	0	.	11990621	11991133	0	1	512	0
chr10	12416718	12417254	B_cells_Cheung.33040	0	.	12416718	12417254	0	1	536	0
chr10	12424703	12427568	B_cells_Cheung.33044	0	.	12424703	12427568	0	1	2865	0
chr10	13240171	13240875	CD4_Plagnol_activated.11807	0	.	13240171	13240875	0	1	704	0
chr10	13298398	13299102	B_cells_Cheung.33203	0	.	13298398	13299102	0	1	704	0
chr10	13352719	13355348	MIP101.11612	0	.	13352719	13355348	0	1	2629	0
chr10	13357900	13358313	B_cells_Cheung.33209	0	.	13357900	13358313	0	1	413	0
chr10	13394674	13395374	CD4_Plagnol_resting.11468	0	.	13394674	13395374	0	1	700	0
chr10	13433299	13435298	B_Cells_Pritchard.536733	0	.	13433299	13435298	0	1	1999	0
chr10	13494872	13505586	H1_polyA+.19775	0	+	13494872	13505586	0	2	1324,846	0,9868
chr10	13611293	13612132	HepG2_Caltech_ENCODE.6305	0	.	13611293	13612132	0	1	839	0
chr10	13611500	13612411	prostate_carcinoma.16832	0	.	13611500	13612411	0	1	911	0
chr10	13717714	13720283	MDAMB468_Thompson.4633	0	.	13717714	13720283	0	1	2569	0
chr10	13723095	13723899	MCF7_Burge_Thompson.5439	0	.	13723095	13723899	0	1	804	0
chr10	13724069	13724537	MDAMB468_Thompson.4634	0	.	13724069	13724537	0	1	468	0
chr10	14549473	14553385	REMC_LuminalBreast.17987	0	.	14549473	14553385	0	1	3912	0
chr10	14554141	14555252	REMC_MyoepithelialBreast.16738	0	.	14554141	14555252	0	1	1111	0
chr10	14555065	14557571	REMC_LuminalBreast.17989	0	.	14555065	14557571	0	1	2506	0
chr10	14565120	14570610	REMC_LuminalBreast.17993	0	.	14565120	14570610	0	1	5490	0
chr10	14565452	14566883	REMC_MyoepithelialBreast.16743	0	.	14565452	14566883	0	1	1431	0
chr10	14568208	14569398	REMC_BreastStem.9241	0	.	14568208	14569398	0	1	1190	0
chr10	14576531	14577889	REMC_BreastStem.9242	0	.	14576531	14577889	0	1	1358	0
chr10	14577095	14595627	REMC_MyoepithelialBreast.16748	0	.	14577095	14595627	0	1	18532	0
chr10	14578045	14582064	REMC_BreastStem.9243	0	.	14578045	14582064	0	1	4019	0
chr10	14579237	14580722	CD4_Plagnol_resting.11534	0	.	14579237	14580722	0	1	1485	0
chr10	14579408	14580742	B_Cells_Pritchard.540307	0	.	14579408	14580742	0	1	1334	0
chr10	14579878	14580727	CD4_Plagnol_activated.11874	0	.	14579878	14580727	0	1	849	0
chr10	14582812	14584886	CD4_Plagnol_resting.11538	0	.	14582812	14584886	0	1	2074	0
chr10	14585814	14586618	CD4_Plagnol_activated.11877	0	.	14585814	14586618	0	1	804	0
chr10	14586151	14586681	B_cells_Cheung.33299	0	.	14586151	14586681	0	1	530	0
chr10	14586255	14589923	REMC_BreastStem.9246	0	.	14586255	14589923	0	1	3668	0
chr10	14588255	14588740	B_Cells_Pritchard.540351	0	.	14588255	14588740	0	1	485	0
chr10	14588619	14589657	CD4_Plagnol_resting.11541	0	.	14588619	14589657	0	1	1038	0
chr10	14588907	14590189	B_Cells_Pritchard.540353	0	.	14588907	14590189	0	1	1282	0
chr10	14592261	14594449	B_Cells_Pritchard.540361	0	.	14592261	14594449	0	1	2188	0
chr10	14883775	14884080	A549_Myers.12320	0	.	14883775	14884080	0	1	305	0
chr10	14898606	14899020	B_cells_Cheung.33318	0	.	14898606	14899020	0	1	414	0
chr10	14955121	14955940	B_Cells_Pritchard.541155	0	.	14955121	14955940	0	1	819	0
chr10	15264850	15272723	REMC_MyoepithelialBreast.16847	0	-	15264850	15272723	0	2	3994,957	0,6916
chr10	15264850	15269322	REMC_MyoepithelialBreast.16848	0	.	15264850	15269322	0	1	4472	0
chr10	15265881	15267886	prostate_carcinoma.16988	0	.	15265881	15267886	0	1	2005	0
chr10	15267033	15273314	pHIT000017313	0	-	15267033	15273314	0	3	200,193,42	0,4733,6239
chr10	15267148	15268103	REMC_LuminalBreast.18114	0	.	15267148	15268103	0	1	955	0
chr10	15268325	15272346	REMC_LuminalBreast.18115	0	-	15268325	15272346	0	2	519,580	0,3441
chr10	15273075	15275235	REMC_MyoepithelialBreast.16849	0	.	15273075	15275235	0	1	2160	0
chr10	15273782	15275344	REMC_BreastStem.9437	0	.	15273782	15275344	0	1	1562	0
chr10	15276834	15277407	REMC_BreastStem.9439	0	.	15276834	15277407	0	1	573	0
chr10	15279355	15282296	REMC_LuminalBreast.18117	0	.	15279355	15282296	0	1	2941	0
chr10	15281493	15284450	REMC_MyoepithelialBreast.16851	0	.	15281493	15284450	0	1	2957	0
chr10	15282471	15284539	REMC_LuminalBreast.18118	0	.	15282471	15284539	0	1	2068	0
chr10	15282907	15284449	REMC_BreastStem.9443	0	.	15282907	15284449	0	1	1542	0
chr10	15284579	15285968	REMC_BreastStem.9444	0	.	15284579	15285968	0	1	1389	0
chr10	15284684	15285953	REMC_LuminalBreast.18119	0	.	15284684	15285953	0	1	1269	0
chr10	15286348	15287374	REMC_MyoepithelialBreast.16852	0	.	15286348	15287374	0	1	1026	0
chr10	15286409	15287395	REMC_LuminalBreast.18120	0	.	15286409	15287395	0	1	986	0
chr10	15287647	15289189	REMC_BreastStem.9445	0	.	15287647	15289189	0	1	1542	0
chr10	15287707	15289253	REMC_MyoepithelialBreast.16853	0	.	15287707	15289253	0	1	1546	0
chr10	15500072	15503787	K562.8644	0	.	15500072	15503787	0	1	3715	0
chr10	15506290	15507609	K562.8647	0	.	15506290	15507609	0	1	1319	0
chr10	15506290	15514546	K562.8648	0	+	15506290	15514546	0	2	988,149	0,8107
chr10	15516634	15517146	K562.8649	0	.	15516634	15517146	0	1	512	0
chr10	15518232	15519077	K562.8651	0	.	15518232	15519077	0	1	845	0
chr10	15558398	15558721	A549_Myers.12371	0	.	15558398	15558721	0	1	323	0
chr10	15856740	15858891	REMC_LuminalBreast.18170	0	.	15856740	15858891	0	1	2151	0
chr10	15858257	15858949	B_cells_Cheung.33454	0	.	15858257	15858949	0	1	692	0
chr10	16109311	16110962	H1_polyA+.20036	0	.	16109311	16110962	0	1	1651	0
chr10	16162908	16163696	H1_polyA+.20137	0	.	16162908	16163696	0	1	788	0
chr10	16169491	16170191	H1_polyA+.20138	0	.	16169491	16170191	0	1	700	0
chr10	16220865	16222348	H1_polyA+.20154	0	.	16220865	16222348	0	1	1483	0
chr10	16227925	16228572	H1_polyA+.20160	0	.	16227925	16228572	0	1	647	0
chr10	16236299	16252895	H1_polyA+.20165	0	-	16236299	16252895	0	2	1302,13504	0,3092
chr10	16236299	16252895	H1_polyA+.20166	0	.	16236299	16252895	0	1	16596	0
chr10	16244756	16245146	H9_polyA+.8198	0	.	16244756	16245146	0	1	390	0
chr10	16248410	16249053	H9_polyA+.8200	0	.	16248410	16249053	0	1	643	0
chr10	16252611	16253171	H9_polyA+.8202	0	.	16252611	16253171	0	1	560	0
chr10	16252984	16253794	H1_polyA+.20167	0	.	16252984	16253794	0	1	810	0
chr10	16256508	16256953	H1_rRNA-depleted_UCSD_REMC.15831	0	.	16256508	16256953	0	1	445	0
chr10	16259860	16263428	H1_polyA+.20176	0	.	16259860	16263428	0	1	3568	0
chr10	16263493	16271140	H1_polyA+.20177	0	.	16263493	16271140	0	1	7647	0
chr10	16267164	16267659	H9_polyA+.8204	0	.	16267164	16267659	0	1	495	0
chr10	16304171	16304585	H1_polyA+.20186	0	.	16304171	16304585	0	1	414	0
chr10	16319302	16321574	H1_polyA+.20043	0	.	16319302	16321574	0	1	2272	0
chr10	16324232	16329958	H1_polyA+.20046	0	.	16324232	16329958	0	1	5726	0
chr10	16342568	16346153	H1_polyA+.20051	0	.	16342568	16346153	0	1	3585	0
chr10	16347907	16353274	H1_polyA+.20053	0	.	16347907	16353274	0	1	5367	0
chr10	16353446	16358356	H1_polyA+.20054	0	.	16353446	16358356	0	1	4910	0
chr10	16358462	16364509	H1_polyA+.20055	0	.	16358462	16364509	0	1	6047	0
chr10	16377139	16380309	H1_polyA+.20059	0	.	16377139	16380309	0	1	3170	0
chr10	16386408	16388729	H1_polyA+.20063	0	.	16386408	16388729	0	1	2321	0
chr10	16398292	16402679	H1_polyA+.20068	0	.	16398292	16402679	0	1	4387	0
chr10	16403212	16417928	H1_polyA+.20070	0	.	16403212	16417928	0	1	14716	0
chr10	16442197	16443093	H1_polyA+.20086	0	.	16442197	16443093	0	1	896	0
chr10	16463922	16466729	H1_polyA+.20099	0	.	16463922	16466729	0	1	2807	0
chr10	16610332	16611419	H1_polyA+.20121	0	.	16610332	16611419	0	1	1087	0
chr10	16610931	16611433	B_Cells_Pritchard.545193	0	.	16610931	16611433	0	1	502	0
chr10	16618134	16619598	REMC_LuminalBreast.18186	0	.	16618134	16619598	0	1	1464	0
chr10	16618225	16620036	H1_polyA+.20124	0	.	16618225	16620036	0	1	1811	0
chr10	16618290	16619404	MIP101.11731	0	.	16618290	16619404	0	1	1114	0
chr10	16636468	16637742	REMC_LuminalBreast.18192	0	.	16636468	16637742	0	1	1274	0
chr10	16648125	16649089	B_Cells_Pritchard.545357	0	.	16648125	16649089	0	1	964	0
chr10	16648237	16649105	BT474_Burge_Thompson.5679	0	.	16648237	16649105	0	1	868	0
chr10	16648267	16648869	MCF10A_Thompson.4093	0	.	16648267	16648869	0	1	602	0
chr10	16648407	16648802	MCF7_Burge_Thompson.5481	0	.	16648407	16648802	0	1	395	0
chr10	16667927	16668287	CD4_Plagnol_resting.11648	0	.	16667927	16668287	0	1	360	0
chr10	16667969	16668304	B_cells_Cheung.33545	0	.	16667969	16668304	0	1	335	0
chr10	17296856	17297311	lymph_node_Burge.8826	0	.	17296856	17297311	0	1	455	0
chr10	17296875	17297350	NEC_from_H9.13281	0	.	17296875	17297350	0	1	475	0
chr10	17302877	17306563	REMC_LuminalBreast.18232	0	.	17302877	17306563	0	1	3686	0
chr10	17307680	17308522	K562.8802	0	.	17307680	17308522	0	1	842	0
chr10	17307829	17309192	MCF7_Burge_Thompson.5489	0	.	17307829	17309192	0	1	1363	0
chr10	17308803	17309176	A549_Myers.13482	0	.	17308803	17309176	0	1	373	0
chr10	17330907	17333237	REMC_MyoepithelialBreast.16977	0	.	17330907	17333237	0	1	2330	0
chr10	17598336	17599193	K562.8692	0	.	17598336	17599193	0	1	857	0
chr10	17620898	17621891	K562.8699	0	.	17620898	17621891	0	1	993	0
chr10	17640899	17641745	B_cells_Cheung.33630	0	.	17640899	17641745	0	1	846	0
chr10	17803646	17804303	REMC_LuminalBreast.18314	0	.	17803646	17804303	0	1	657	0
chr10	17804002	17805313	REMC_BreastStem.9568	0	.	17804002	17805313	0	1	1311	0
chr10	17804406	17805231	REMC_MyoepithelialBreast.17037	0	.	17804406	17805231	0	1	825	0
chr10	17804408	17805229	REMC_LuminalBreast.18315	0	.	17804408	17805229	0	1	821	0
chr10	17804419	17805310	H1_polyA+.20255	0	.	17804419	17805310	0	1	891	0
chr10	19020959	19021670	REMC_LuminalBreast.18323	0	.	19020959	19021670	0	1	711	0
chr10	19289476	19289929	B_Cells_Pritchard.550543	0	.	19289476	19289929	0	1	453	0
chr10	20139988	20141116	REMC_MyoepithelialBreast.17042	0	.	20139988	20141116	0	1	1128	0
chr10	20611022	20615233	B_Cells_Pritchard.553881	0	.	20611022	20615233	0	1	4211	0
chr10	20611040	20618392	H9_polyA+.8279	0	.	20611040	20618392	0	1	7352	0
chr10	20612189	20618856	prostate_normal.10367	0	.	20612189	20618856	0	1	6667	0
chr10	20622293	20622634	REMC_LuminalBreast.18332	0	.	20622293	20622634	0	1	341	0
chr10	20626419	20628605	REMC_MyoepithelialBreast.17050	0	.	20626419	20628605	0	1	2186	0
chr10	20627350	20628368	REMC_LuminalBreast.18334	0	.	20627350	20628368	0	1	1018	0
chr10	20646364	20648279	REMC_MyoepithelialBreast.17062	0	.	20646364	20648279	0	1	1915	0
chr10	20650349	20651986	REMC_MyoepithelialBreast.17064	0	.	20650349	20651986	0	1	1637	0
chr10	20686811	20689195	REMC_MyoepithelialBreast.17077	0	.	20686811	20689195	0	1	2384	0
chr10	20687021	20687878	REMC_LuminalBreast.18344	0	.	20687021	20687878	0	1	857	0
chr10	20702188	20706266	H1_polyA+.20356	0	.	20702188	20706266	0	1	4078	0
chr10	20703818	20704727	REMC_LuminalBreast.18346	0	.	20703818	20704727	0	1	909	0
chr10	20706369	20707222	H1_polyA+.20357	0	.	20706369	20707222	0	1	853	0
chr10	20708165	20726880	H1_polyA+.20358	0	.	20708165	20726880	0	1	18715	0
chr10	20708216	20709668	REMC_LuminalBreast.18348	0	.	20708216	20709668	0	1	1452	0
chr10	20727887	20731563	H1_polyA+.20360	0	.	20727887	20731563	0	1	3676	0
chr10	20728220	20728599	H1_rRNA-depleted_UCSD_REMC.16001	0	.	20728220	20728599	0	1	379	0
chr10	20731272	20732688	REMC_LuminalBreast.18352	0	.	20731272	20732688	0	1	1416	0
chr10	20875421	20876966	H1_polyA+.20406	0	.	20875421	20876966	0	1	1545	0
chr10	20877733	20881604	H1_polyA+.20407	0	.	20877733	20881604	0	1	3871	0
chr10	20878722	20880772	REMC_LuminalBreast.18363	0	.	20878722	20880772	0	1	2050	0
chr10	20881710	20883946	H1_polyA+.20408	0	.	20881710	20883946	0	1	2236	0
chr10	20890543	20892530	REMC_LuminalBreast.18364	0	.	20890543	20892530	0	1	1987	0
chr10	20902740	20903304	H1_polyA+.20411	0	.	20902740	20903304	0	1	564	0
chr10	20907816	20911630	H1_polyA+.20415	0	.	20907816	20911630	0	1	3814	0
chr10	20910377	20911554	REMC_LuminalBreast.18365	0	.	20910377	20911554	0	1	1177	0
chr10	20933781	20934744	REMC_LuminalBreast.18369	0	.	20933781	20934744	0	1	963	0
chr10	20944312	20946436	REMC_LuminalBreast.18373	0	.	20944312	20946436	0	1	2124	0
chr10	21503287	21503858	Rinn_00017797	0	+	21503287	21503858	0	2	21,443	0,128
chr10	21503288	21503858	ENST00000417845	0	+	21503288	21503858	0	2	20,442	0,128
chr10	21515860	21516460	H1_polyA+.20478	0	.	21515860	21516460	0	1	600	0
chr10	21518114	21518437	H1_polyA+.20481	0	.	21518114	21518437	0	1	323	0
chr10	21532510	21533614	H1_polyA+.20489	0	.	21532510	21533614	0	1	1104	0
chr10	21535020	21536071	H1_polyA+.20491	0	.	21535020	21536071	0	1	1051	0
chr10	21536205	21536928	H1_polyA+.20492	0	.	21536205	21536928	0	1	723	0
chr10	21536982	21538526	H1_polyA+.20493	0	.	21536982	21538526	0	1	1544	0
chr10	21539279	21539790	H1_polyA+.20495	0	.	21539279	21539790	0	1	511	0
chr10	21543275	21544189	H1_polyA+.20499	0	.	21543275	21544189	0	1	914	0
chr10	21553817	21556607	H1_polyA+.20507	0	.	21553817	21556607	0	1	2790	0
chr10	21558134	21559531	H1_polyA+.20510	0	.	21558134	21559531	0	1	1397	0
chr10	21560379	21562173	H1_polyA+.20512	0	.	21560379	21562173	0	1	1794	0
chr10	21582639	21587478	H1_polyA+.20530	0	.	21582639	21587478	0	1	4839	0
chr10	21588210	21589150	H9_polyA+.8328	0	.	21588210	21589150	0	1	940	0
chr10	21588720	21589141	NEC_from_H9.13385	0	.	21588720	21589141	0	1	421	0
chr10	21590522	21592666	H1_polyA+.20531	0	.	21590522	21592666	0	1	2144	0
chr10	21594138	21597396	H1_polyA+.20533	0	.	21594138	21597396	0	1	3258	0
chr10	21604922	21611812	H1_polyA+.20536	0	.	21604922	21611812	0	1	6890	0
chr10	21611346	21611670	H1_rRNA-depleted_UCSD_REMC.16054	0	.	21611346	21611670	0	1	324	0
chr10	21621721	21622086	MDAMB468_Thompson.4792	0	.	21621721	21622086	0	1	365	0
chr10	21621758	21622237	NEC_from_H9.13386	0	.	21621758	21622237	0	1	479	0
chr10	21621772	21622122	A549_Myers.12490	0	.	21621772	21622122	0	1	350	0
chr10	21641824	21642156	A549_Myers.12494	0	.	21641824	21642156	0	1	332	0
chr10	21665253	21666017	B_cells_Cheung.33848	0	.	21665253	21666017	0	1	764	0
chr10	21815655	21818397	MDAMB468_Thompson.4713	0	.	21815655	21818397	0	1	2742	0
chr10	21839044	21840110	H1_polyA+.21338	0	.	21839044	21840110	0	1	1066	0
chr10	22804388	22805373	B_Cells_Pritchard.558963	0	.	22804388	22805373	0	1	985	0
chr10	22804443	22805037	testes_Burge.9506	0	.	22804443	22805037	0	1	594	0
chr10	22804492	22805052	brain_AmbionMAQC.8032	0	.	22804492	22805052	0	1	560	0
chr10	22804725	22805167	A549_Myers.12557	0	.	22804725	22805167	0	1	442	0
chr10	22804850	22805169	K562.8827	0	.	22804850	22805169	0	1	319	0
chr10	22858592	22861340	B_Cells_Pritchard.560665	0	-	22858592	22861340	0	1	2748	0
chr10	23371186	23372164	melanoma_Garraway_short_term_cultures.12553	0	.	23371186	23372164	0	1	978	0
chr10	23378730	23379574	melanoma_Garraway_short_term_cultures.12554	0	.	23378730	23379574	0	1	844	0
chr10	23381528	23382374	melanoma_Garraway_short_term_cultures.12556	0	.	23381528	23382374	0	1	846	0
chr10	23389111	23390980	H1_polyA+.20710	0	.	23389111	23390980	0	1	1869	0
chr10	23780330	23784687	REMC_LuminalBreast.18590	0	.	23780330	23784687	0	1	4357	0
chr10	23780433	23783272	REMC_MyoepithelialBreast.17224	0	.	23780433	23783272	0	1	2839	0
chr10	23783388	23785894	REMC_MyoepithelialBreast.17225	0	.	23783388	23785894	0	1	2506	0
chr10	23784835	23786482	REMC_LuminalBreast.18591	0	.	23784835	23786482	0	1	1647	0
chr10	23786661	23789745	REMC_LuminalBreast.18592	0	.	23786661	23789745	0	1	3084	0
chr10	23788530	23789198	REMC_MyoepithelialBreast.17226	0	.	23788530	23789198	0	1	668	0
chr10	23789949	23792710	REMC_LuminalBreast.18593	0	.	23789949	23792710	0	1	2761	0
chr10	23852022	23860643	pHIT000017360	0	-	23852022	23860643	0	2	174,168	0,8453
chr10	23852052	23860643	pHIT000108840	0	-	23852052	23860643	0	2	144,168	0,8423
chr10	24879494	24886612	REMC_LuminalBreast.21371	0	.	24879494	24886612	0	1	7118	0
chr10	24879566	24886717	REMC_MyoepithelialBreast.17291	0	.	24879566	24886717	0	1	7151	0
chr10	24882649	24884473	REMC_BreastStem.10661	0	.	24882649	24884473	0	1	1824	0
chr10	24895201	24902450	REMC_MyoepithelialBreast.17294	0	.	24895201	24902450	0	1	7249	0
chr10	24895381	24897919	REMC_LuminalBreast.21376	0	.	24895381	24897919	0	1	2538	0
chr10	24898034	24909770	REMC_LuminalBreast.21377	0	.	24898034	24909770	0	1	11736	0
chr10	24898186	24900090	REMC_BreastStem.10665	0	.	24898186	24900090	0	1	1904	0
chr10	25053954	25054652	B_cells_Cheung.34291	0	.	25053954	25054652	0	1	698	0
chr10	26670769	26671369	B_Cells_Pritchard.568091	0	.	26670769	26671369	0	1	600	0
chr10	26670824	26671344	B_cells_Cheung.34362	0	.	26670824	26671344	0	1	520	0
chr10	26715308	26716824	B_cells_Cheung.34371	0	.	26715308	26716824	0	1	1516	0
chr10	26715546	26722261	B_Cells_Pritchard.568213	0	-	26715546	26722261	0	4	1274,665,391,1797	0,2953,3717,4918
chr10	26715546	26722261	B_Cells_Pritchard.568211	0	+	26715546	26722261	0	4	982,252,793,1797	0,3122,3469,4918
chr10	26717054	26724659	B_cells_Cheung.34364	0	.	26717054	26724659	0	1	7605	0
chr10	26722388	26724530	B_Cells_Pritchard.568199	0	.	26722388	26724530	0	1	2142	0
chr10	26727441	26729675	B_cells_Cheung.34375	0	.	26727441	26729675	0	1	2234	0
chr10	26727454	26729662	B_Cells_Pritchard.568217	0	.	26727454	26729662	0	1	2208	0
chr10	26736287	26737977	B_cells_Cheung.34383	0	.	26736287	26737977	0	1	1690	0
chr10	26739067	26739871	B_cells_Cheung.34385	0	.	26739067	26739871	0	1	804	0
chr10	26739152	26739796	B_Cells_Pritchard.568259	0	.	26739152	26739796	0	1	644	0
chr10	26761312	26761817	B_Cells_Pritchard.568311	0	.	26761312	26761817	0	1	505	0
chr10	26761927	26762387	B_Cells_Pritchard.568313	0	.	26761927	26762387	0	1	460	0
chr10	26900425	26901940	B_cells_Cheung.34479	0	.	26900425	26901940	0	1	1515	0
chr10	26900576	26902470	B_Cells_Pritchard.569505	0	-	26900576	26902470	0	1	1894	0
chr10	26908526	26909073	B_Cells_Pritchard.568547	0	.	26908526	26909073	0	1	547	0
chr10	26912681	26913122	B_cells_Cheung.34490	0	.	26912681	26913122	0	1	441	0
chr10	26912925	26913897	B_Cells_Pritchard.568567	0	.	26912925	26913897	0	1	972	0
chr10	26913172	26913808	B_cells_Cheung.34491	0	.	26913172	26913808	0	1	636	0
chr10	26914618	26916350	B_cells_Cheung.34492	0	.	26914618	26916350	0	1	1732	0
chr10	26914771	26915565	B_Cells_Pritchard.568571	0	.	26914771	26915565	0	1	794	0
chr10	26915062	26923240	pHIT000108853	0	+	26915062	26923240	0	5	297,203,122,104,177	0,2633,4007,5182,8001
chr10	26916510	26917324	B_cells_Cheung.34493	0	.	26916510	26917324	0	1	814	0
chr10	26916530	26923260	Rinn_00018687	0	+	26916530	26923260	0	4	1415,204,105,393	0,2538,3713,6337
chr10	26916656	26917406	B_Cells_Pritchard.568575	0	.	26916656	26917406	0	1	750	0
chr10	26917393	26917903	B_cells_Cheung.34494	0	.	26917393	26917903	0	1	510	0
chr10	26917548	26918047	B_Cells_Pritchard.568577	0	.	26917548	26918047	0	1	499	0
chr10	26918798	26923255	Rinn_00017671	0	+	26918798	26923255	0	4	474,105,118,388	0,1445,2985,4069
chr10	26918997	26923260	Rinn_00018689	0	+	26918997	26923260	0	3	275,105,393	0,1246,3870
chr10	26922843	26923260	B_cells_Cheung.34501	0	.	26922843	26923260	0	1	417	0
chr10	26922907	26923266	testes_Burge.9565	0	.	26922907	26923266	0	1	359	0
chr10	26969054	26978134	Rinn_00018690	0	+	26969054	26978134	0	3	153,2558,250	0,5605,8830
chr10	26969710	26970053	testes_Burge.9566	0	.	26969710	26970053	0	1	343	0
chr10	26972042	26982389	NR_026794	0	+	26972042	26982389	0	5	5175,98,203,238,390	0,5843,6283,7446,9957
chr10	26972102	26982433	HIT000306274	0	+	26972102	26982433	0	5	5115,98,201,240,434	0,5783,6223,7384,9897
chr10	26974640	27004717	K562.8922	0	-	26974640	27004717	0	4	189,2334,3793,89	0,16353,18996,29988
chr10	26974848	26975449	testes_Burge.9569	0	.	26974848	26975449	0	1	601	0
chr10	26976920	26982381	ENST00000423917	0	+	26976920	26982381	0	5	297,100,203,238,382	0,965,1405,2568,5079
chr10	26976936	26977297	testes_Burge.9571	0	.	26976936	26977297	0	1	361	0
chr10	26977034	26982389	ENST00000434458	0	+	26977034	26982389	0	4	183,203,104,390	0,1291,2454,4965
chr10	26982016	26982389	testes_Burge.9567	0	.	26982016	26982389	0	1	373	0
chr10	27260046	27270936	HIT000095194	0	-	27260046	27270936	0	5	451,92,219,250,2706	0,3301,4297,5625,8184
chr10	27260140	27270936	ENST00000431296	0	-	27260140	27270936	0	5	357,104,203,250,2706	0,3207,4219,5531,8090
chr10	27260140	27266794	ENST00000458084	0	-	27260140	27266794	0	4	357,104,203,1123	0,3207,4219,5531
chr10	27260140	27263858	ENST00000458682	0	-	27260140	27263858	0	2	357,511	0,3207
chr10	27260140	27270936	NR_026795	0	-	27260140	27270936	0	5	357,104,203,250,2706	0,3207,4219,5531,8090
chr10	27260151	27260488	HepG2_Caltech_ENCODE.6492	0	.	27260151	27260488	0	1	337	0
chr10	27260153	27270402	pHIT000108857	0	-	27260153	27270402	0	4	153,104,166,342	0,3194,8216,9907
chr10	27260155	27266794	HIT000022259	0	-	27260155	27266794	0	4	342,92,219,1123	0,3192,4188,5516
chr10	27260158	27271626	HIT000047900	0	-	27260158	27271626	0	4	339,92,180,5362	0,3189,4185,6106
chr10	27260172	27260491	prostate_carcinoma.17696	0	.	27260172	27260491	0	1	319	0
chr10	27260175	27260498	B_cells_Cheung.34548	0	.	27260175	27260498	0	1	323	0
chr10	27260175	27260495	prostate_normal.10519	0	.	27260175	27260495	0	1	320	0
chr10	27260175	27260503	B_Cells_Pritchard.569269	0	.	27260175	27260503	0	1	328	0
chr10	27260181	27260486	BT474_Burge_Thompson.5815	0	.	27260181	27260486	0	1	305	0
chr10	27260182	27260636	H1_polyA+.21044	0	.	27260182	27260636	0	1	454	0
chr10	27260183	27260494	brain_AmbionMAQC.8099	0	.	27260183	27260494	0	1	311	0
chr10	27264585	27272097	REMC_LuminalBreast.18892	0	.	27264585	27272097	0	1	7512	0
chr10	27264899	27267298	HepG2_Caltech_ENCODE.6493	0	.	27264899	27267298	0	1	2399	0
chr10	27265404	27266890	B_Cells_Pritchard.569283	0	.	27265404	27266890	0	1	1486	0
chr10	27265406	27268484	prostate_carcinoma.17699	0	.	27265406	27268484	0	1	3078	0
chr10	27265408	27266297	REMC_MyoepithelialBreast.17533	0	.	27265408	27266297	0	1	889	0
chr10	27265459	27266247	H1_polyA+.21045	0	.	27265459	27266247	0	1	788	0
chr10	27265583	27266241	brain_AmbionMAQC.8101	0	.	27265583	27266241	0	1	658	0
chr10	27267987	27268501	B_Cells_Pritchard.569289	0	.	27267987	27268501	0	1	514	0
chr10	27269489	27270289	HepG2_Caltech_ENCODE.6495	0	.	27269489	27270289	0	1	800	0
chr10	27269680	27270781	B_Cells_Pritchard.569293	0	.	27269680	27270781	0	1	1101	0
chr10	27269735	27270223	MIP101.12160	0	.	27269735	27270223	0	1	488	0
chr10	27269910	27270326	prostate_carcinoma.17705	0	.	27269910	27270326	0	1	416	0
chr10	27269993	27270985	brain_AmbionMAQC.8104	0	.	27269993	27270985	0	1	992	0
chr10	27270215	27270771	B_cells_Cheung.34556	0	.	27270215	27270771	0	1	556	0
chr10	27272345	27275548	REMC_LuminalBreast.18893	0	-	27272345	27275548	0	2	575,466	0,2737
chr10	27272345	27275548	REMC_LuminalBreast.18894	0	.	27272345	27275548	0	1	3203	0
chr10	27272588	27273700	B_Cells_Pritchard.569301	0	.	27272588	27273700	0	1	1112	0
chr10	27272626	27273250	MIP101.12161	0	.	27272626	27273250	0	1	624	0
chr10	27272708	27273288	HepG2_Caltech_ENCODE.6497	0	.	27272708	27273288	0	1	580	0
chr10	27272896	27273285	testes_Burge.9582	0	.	27272896	27273285	0	1	389	0
chr10	27278405	27280173	HepG2_Caltech_ENCODE.6500	0	.	27278405	27280173	0	1	1768	0
chr10	27278672	27282081	REMC_LuminalBreast.18897	0	.	27278672	27282081	0	1	3409	0
chr10	27278787	27281210	B_cells_Cheung.34560	0	.	27278787	27281210	0	1	2423	0
chr10	27278801	27280486	H1_polyA+.21051	0	.	27278801	27280486	0	1	1685	0
chr10	27278926	27279640	B_Cells_Pritchard.569333	0	-	27278926	27279640	0	2	370,344	0,370
chr10	27281264	27281665	B_cells_Cheung.34561	0	.	27281264	27281665	0	1	401	0
chr10	27284272	27286208	REMC_LuminalBreast.18900	0	.	27284272	27286208	0	1	1936	0
chr10	27285572	27290021	H1_polyA+.21054	0	.	27285572	27290021	0	1	4449	0
chr10	27286323	27289955	REMC_LuminalBreast.18901	0	.	27286323	27289955	0	1	3632	0
chr10	27287058	27289905	B_cells_Cheung.34570	0	.	27287058	27289905	0	1	2847	0
chr10	27288129	27311192	MIP101.13274	0	-	27288129	27311192	0	3	1778,90,499	0,7006,22564
chr10	27288228	27289859	HepG2_Caltech_ENCODE.6503	0	.	27288228	27289859	0	1	1631	0
chr10	27288673	27289899	melanoma_Garraway_short_term_cultures.12707	0	.	27288673	27289899	0	1	1226	0
chr10	27288696	27289872	prostate_normal.10529	0	.	27288696	27289872	0	1	1176	0
chr10	27288696	27289900	REMC_MyoepithelialBreast.17543	0	.	27288696	27289900	0	1	1204	0
chr10	27289008	27289744	HeLa_polyA+_Chen.6535	0	.	27289008	27289744	0	1	736	0
chr10	27294461	27298847	REMC_MyoepithelialBreast.17547	0	-	27294461	27298847	0	2	1355,978	0,3408
chr10	27294750	27309782	REMC_LuminalBreast.18904	0	-	27294750	27309782	0	5	1066,116,161,77,272	0,3119,3677,10150,14760
chr10	27294770	27296200	H1_polyA+.21050	0	.	27294770	27296200	0	1	1430	0
chr10	27295074	27295822	HepG2_Caltech_ENCODE.6506	0	.	27295074	27295822	0	1	748	0
chr10	27295367	27295828	melanoma_Garraway_short_term_cultures.12711	0	.	27295367	27295828	0	1	461	0
chr10	27296847	27297709	B_Cells_Pritchard.569411	0	+	27296847	27297709	0	1	862	0
chr10	27310106	27314390	MIP101.13275	0	.	27310106	27314390	0	1	4284	0
chr10	27312915	27314312	melanoma_Garraway_short_term_cultures.12717	0	.	27312915	27314312	0	1	1397	0
chr10	27316289	27318883	H1_polyA+.21064	0	.	27316289	27318883	0	1	2594	0
chr10	27316343	27320401	MIP101.13283	0	.	27316343	27320401	0	1	4058	0
chr10	27317823	27318327	melanoma_Garraway_short_term_cultures.12719	0	.	27317823	27318327	0	1	504	0
chr10	27432020	27433429	REMC_MyoepithelialBreast.17559	0	.	27432020	27433429	0	1	1409	0
chr10	27432097	27433433	REMC_LuminalBreast.18920	0	.	27432097	27433433	0	1	1336	0
chr10	27433619	27434425	REMC_BreastStem.9673	0	.	27433619	27434425	0	1	806	0
chr10	27433760	27434818	B_cells_Cheung.34616	0	.	27433760	27434818	0	1	1058	0
chr10	27433777	27435204	REMC_MyoepithelialBreast.17560	0	.	27433777	27435204	0	1	1427	0
chr10	27433803	27434430	B_Cells_Pritchard.598933	0	+	27433803	27434430	0	1	627	0
chr10	27433898	27434608	H1_polyA+.21043	0	.	27433898	27434608	0	1	710	0
chr10	27434132	27435204	REMC_LuminalBreast.18921	0	.	27434132	27435204	0	1	1072	0
chr10	27519205	27520043	B_cells_Cheung.34643	0	.	27519205	27520043	0	1	838	0
chr10	27587775	27588185	B_Cells_Pritchard.569563	0	.	27587775	27588185	0	1	410	0
chr10	27587936	27588341	A549_Myers.12721	0	.	27587936	27588341	0	1	405	0
chr10	27798033	27798413	H1_polyA+.21082	0	.	27798033	27798413	0	1	380	0
chr10	27894872	27944484	REMC_BreastStem.9731	0	+	27894872	27944484	0	4	988,146,1509,345	0,3850,12433,49267
chr10	27895388	27909527	REMC_LuminalBreast.18958	0	+	27895388	27909527	0	3	472,292,2222	0,3188,11917
chr10	27898576	27899129	REMC_LuminalBreast.18960	0	.	27898576	27899129	0	1	553	0
chr10	27907082	27909527	REMC_LuminalBreast.18961	0	.	27907082	27909527	0	1	2445	0
chr10	27907128	27910270	B_Cells_Pritchard.570279	0	.	27907128	27910270	0	1	3142	0
chr10	27907661	27909020	REMC_MyoepithelialBreast.17601	0	.	27907661	27909020	0	1	1359	0
chr10	27915563	27916684	REMC_LuminalBreast.18970	0	.	27915563	27916684	0	1	1121	0
chr10	27915903	27916686	REMC_MyoepithelialBreast.17606	0	.	27915903	27916686	0	1	783	0
chr10	27915964	27916869	REMC_BreastStem.9738	0	.	27915964	27916869	0	1	905	0
chr10	27916913	27917561	REMC_MyoepithelialBreast.17607	0	.	27916913	27917561	0	1	648	0
chr10	27917886	27918359	REMC_LuminalBreast.18971	0	.	27917886	27918359	0	1	473	0
chr10	27919928	27920444	REMC_MyoepithelialBreast.17608	0	.	27919928	27920444	0	1	516	0
chr10	27928147	27928983	REMC_MyoepithelialBreast.17609	0	.	27928147	27928983	0	1	836	0
chr10	27941728	27942555	REMC_LuminalBreast.18980	0	.	27941728	27942555	0	1	827	0
chr10	27946171	27954284	REMC_MyoepithelialBreast.17616	0	.	27946171	27954284	0	1	8113	0
chr10	27949477	27953496	REMC_LuminalBreast.18975	0	.	27949477	27953496	0	1	4019	0
chr10	27949583	27950814	REMC_BreastStem.9718	0	.	27949583	27950814	0	1	1231	0
chr10	27953617	27954113	REMC_LuminalBreast.18986	0	.	27953617	27954113	0	1	496	0
chr10	27954389	27958955	REMC_MyoepithelialBreast.17617	0	.	27954389	27958955	0	1	4566	0
chr10	27955034	27955542	B_Cells_Pritchard.570417	0	.	27955034	27955542	0	1	508	0
chr10	27983010	27984120	REMC_MyoepithelialBreast.17628	0	.	27983010	27984120	0	1	1110	0
chr10	27994077	27996075	REMC_MyoepithelialBreast.17632	0	.	27994077	27996075	0	1	1998	0
chr10	28134179	28134685	prostate_carcinoma.17800	0	.	28134179	28134685	0	1	506	0
chr10	28729697	28731366	B_cells_Cheung.34729	0	.	28729697	28731366	0	1	1669	0
chr10	28823259	28824919	MIP101.12277	0	.	28823259	28824919	0	1	1660	0
chr10	28825420	28826317	MIP101.12278	0	.	28825420	28826317	0	1	897	0
chr10	28826431	28826989	MIP101.12279	0	.	28826431	28826989	0	1	558	0
chr10	28843149	28847814	B_cells_Cheung.34752	0	.	28843149	28847814	0	1	4665	0
chr10	28846187	28848397	REMC_LuminalBreast.19002	0	.	28846187	28848397	0	1	2210	0
chr10	28848851	28861289	NR_033805	0	-	28848851	28861289	0	3	4695,61,620	0,6031,11818
chr10	28849189	28854034	MIP101.12634	0	-	28849189	28854034	0	3	10,77,1377	0,1992,3468
chr10	28850308	28854036	prostate_carcinoma.18097	0	+	28850308	28854036	0	2	10,1392	0,2336
chr10	28851219	28853363	HeLa_Bartel_WT_12hr.6284	0	-	28851219	28853363	0	2	39,706	0,1438
chr10	28851604	28861289	HIT000098237	0	-	28851604	28861289	0	3	1942,61,620	0,3278,9065
chr10	28851619	28861289	ENST00000528337	0	-	28851619	28861289	0	3	1927,61,620	0,3263,9050
chr10	28851829	28854002	liver_polyA+.24855	0	-	28851829	28854002	0	3	51,48,1348	0,668,825
chr10	28851934	28853438	HIT000003617	0	-	28851934	28853438	0	1	1504	0
chr10	28852068	28852882	adipose_Burge.6904	0	+	28852068	28852882	0	2	83,247	0,567
chr10	28852300	28860760	MDAMB468_Thompson.4857	0	-	28852300	28860760	0	2	2643,91	0,8369
chr10	28852336	28854170	melanoma_Garraway_short_term_cultures.12767	0	.	28852336	28854170	0	1	1834	0
chr10	28852401	28854037	H9_polyA+.8539	0	.	28852401	28854037	0	1	1636	0
chr10	28852447	28854002	kidney_Gilad.15994	0	-	28852447	28854002	0	2	98,1348	0,207
chr10	28852449	28853992	MDAMB231_Thompson.4234	0	.	28852449	28853992	0	1	1543	0
chr10	28852554	28852999	breast_Burge.7216	0	.	28852554	28852999	0	1	445	0
chr10	28852629	28853165	IMR90_UCSD_REMC.9002	0	+	28852629	28853165	0	1	536	0
chr10	28852646	28853984	MeI_Garraway.3308	0	.	28852646	28853984	0	1	1338	0
chr10	28852660	28854032	NEC_from_H9.13660	0	.	28852660	28854032	0	1	1372	0
chr10	28852662	28854009	CD4_Snyder.14141	0	.	28852662	28854009	0	1	1347	0
chr10	28852740	28853333	H1_rRNA-depleted_UCSD_REMC.16362	0	.	28852740	28853333	0	1	593	0
chr10	28858538	28859491	K562.9070	0	.	28858538	28859491	0	1	953	0
chr10	29038204	29073042	pHIT000108873	0	+	29038204	29073042	0	2	63,313	0,34525
chr10	29038204	29073042	pHIT000083308	0	+	29038204	29073042	0	3	63,84,313	0,385,34525
chr10	29118080	29120978	HIT000024253	0	-	29118080	29120978	0	1	2898	0
chr10	29118122	29124908	ENST00000443246	0	-	29118122	29124908	0	2	3757,201	0,6585
chr10	29118229	29124912	HIT000091602	0	-	29118229	29124912	0	2	3650,205	0,6478
chr10	29118245	29124908	Rinn_00017732	0	-	29118245	29124908	0	2	3634,202	0,6461
chr10	29119005	29119666	testes_Burge.9646	0	.	29119005	29119666	0	1	661	0
chr10	29150805	29153821	K562.8979	0	.	29150805	29153821	0	1	3016	0
chr10	29218433	29220715	melanoma_Garraway_short_term_cultures.12784	0	.	29218433	29220715	0	1	2282	0
chr10	29219152	29220419	MeWo_Garraway.6389	0	.	29219152	29220419	0	1	1267	0
chr10	29222805	29224961	MeI_Garraway.3312	0	.	29222805	29224961	0	1	2156	0
chr10	29222893	29224884	melanoma_Garraway_short_term_cultures.12786	0	.	29222893	29224884	0	1	1991	0
chr10	29223769	29224767	HepG2_Caltech_ENCODE.6562	0	.	29223769	29224767	0	1	998	0
chr10	29228906	29230635	melanoma_Garraway_short_term_cultures.12788	0	.	29228906	29230635	0	1	1729	0
chr10	29264434	29265361	HepG2_Caltech_ENCODE.6563	0	.	29264434	29265361	0	1	927	0
chr10	29277792	29278442	HepG2_Caltech_ENCODE.6568	0	.	29277792	29278442	0	1	650	0
chr10	29313375	29313715	A549_Myers.12754	0	.	29313375	29313715	0	1	340	0
chr10	29369432	29370329	B_Cells_Pritchard.574215	0	.	29369432	29370329	0	1	897	0
chr10	29460412	29462216	prostate_carcinoma.17905	0	.	29460412	29462216	0	1	1804	0
chr10	29460586	29461597	ZR751_Thompson.4669	0	.	29460586	29461597	0	1	1011	0
chr10	29460646	29462272	BT474_Burge_Thompson.5862	0	.	29460646	29462272	0	1	1626	0
chr10	29460941	29461678	MCF7_Burge_Thompson.5601	0	.	29460941	29461678	0	1	737	0
chr10	29462864	29463686	prostate_carcinoma.17906	0	.	29462864	29463686	0	1	822	0
chr10	29471455	29472973	BT474_Burge_Thompson.5863	0	.	29471455	29472973	0	1	1518	0
chr10	29471569	29472968	BT20_Thompson.4098	0	.	29471569	29472968	0	1	1399	0
chr10	29471576	29472968	T47D_Burge_Thompson.5170	0	.	29471576	29472968	0	1	1392	0
chr10	29471581	29472980	H1_polyA+.21132	0	.	29471581	29472980	0	1	1399	0
chr10	29471581	29472090	MCF7_Burge_Thompson.5602	0	.	29471581	29472090	0	1	509	0
chr10	29471582	29471996	H9_polyA+.8492	0	.	29471582	29471996	0	1	414	0
chr10	29471589	29472019	H1_rRNA-depleted_UCSD_REMC.16368	0	.	29471589	29472019	0	1	430	0
chr10	29471596	29472546	K562.8983	0	.	29471596	29472546	0	1	950	0
chr10	29471613	29472212	MDAMB468_Thompson.4808	0	.	29471613	29472212	0	1	599	0
chr10	29471670	29471993	prostate_carcinoma.17909	0	.	29471670	29471993	0	1	323	0
chr10	29471672	29472002	testes_Burge.9648	0	.	29471672	29472002	0	1	330	0
chr10	29472093	29472921	prostate_carcinoma.17910	0	.	29472093	29472921	0	1	828	0
chr10	29472216	29472923	MCF7_Burge_Thompson.5603	0	.	29472216	29472923	0	1	707	0
chr10	29472385	29472972	MDAMB468_Thompson.4809	0	.	29472385	29472972	0	1	587	0
chr10	29491866	29492809	REMC_LuminalBreast.19023	0	.	29491866	29492809	0	1	943	0
chr10	29558143	29558685	A549_Myers.12756	0	.	29558143	29558685	0	1	542	0
chr10	29706306	29707447	REMC_LuminalBreast.19028	0	.	29706306	29707447	0	1	1141	0
chr10	29721051	29722088	REMC_LuminalBreast.19033	0	.	29721051	29722088	0	1	1037	0
chr10	29729264	29734626	REMC_LuminalBreast.19037	0	.	29729264	29734626	0	1	5362	0
chr10	29730519	29731324	REMC_MyoepithelialBreast.17680	0	.	29730519	29731324	0	1	805	0
chr10	29751335	29752150	kidney_Gilad.16037	0	.	29751335	29752150	0	1	815	0
chr10	29752639	29759411	REMC_MyoepithelialBreast.17951	0	.	29752639	29759411	0	1	6772	0
chr10	29756225	29758506	REMC_BreastStem.9767	0	.	29756225	29758506	0	1	2281	0
chr10	29756297	29758915	REMC_LuminalBreast.19191	0	.	29756297	29758915	0	1	2618	0
chr10	29757092	29757979	B_cells_Cheung.34782	0	.	29757092	29757979	0	1	887	0
chr10	29759015	29777918	REMC_LuminalBreast.19192	0	.	29759015	29777918	0	1	18903	0
chr10	29760014	29765850	REMC_MyoepithelialBreast.17952	0	.	29760014	29765850	0	1	5836	0
chr10	29762584	29764340	HepG2_Caltech_ENCODE.6575	0	.	29762584	29764340	0	1	1756	0
chr10	29775316	29776271	melanoma_Garraway_short_term_cultures.12808	0	.	29775316	29776271	0	1	955	0
chr10	29780294	29781419	REMC_BreastStem.9772	0	.	29780294	29781419	0	1	1125	0
chr10	29783115	29784699	REMC_BreastStem.9774	0	.	29783115	29784699	0	1	1584	0
chr10	29783276	29786234	HIT000017246	0	+	29783276	29786234	0	2	1365,1188	0,1770
chr10	30066030	30066889	REMC_MyoepithelialBreast.17688	0	.	30066030	30066889	0	1	859	0
chr10	30111301	30113041	REMC_LuminalBreast.19044	0	-	30111301	30113041	0	3	295,145,507	0,921,1233
chr10	30111973	30113041	REMC_LuminalBreast.19045	0	.	30111973	30113041	0	1	1068	0
chr10	30112336	30113013	MCF10A_Thompson.4197	0	.	30112336	30113013	0	1	677	0
chr10	30113113	30114171	REMC_LuminalBreast.19046	0	.	30113113	30114171	0	1	1058	0
chr10	30186082	30186426	H1_polyA+.21157	0	.	30186082	30186426	0	1	344	0
chr10	30190523	30191272	REMC_LuminalBreast.19051	0	.	30190523	30191272	0	1	749	0
chr10	30276327	30280724	liver_polyA+.24803	0	+	30276327	30280724	0	2	319,312	0,4085
chr10	30320167	30330016	Rinn_00018899	0	-	30320167	30330016	0	2	2032,123	0,9726
chr10	30327034	30327486	A549_Myers.12798	0	.	30327034	30327486	0	1	452	0
chr10	30453854	30454836	prostate_carcinoma.18003	0	.	30453854	30454836	0	1	982	0
chr10	30511250	30511699	A549_Myers.12813	0	.	30511250	30511699	0	1	449	0
chr10	30592625	30593076	B_cells_Cheung.34863	0	.	30592625	30593076	0	1	451	0
chr10	30600824	30601219	B_Cells_Pritchard.577851	0	.	30600824	30601219	0	1	395	0
chr10	30600904	30601464	B_cells_Cheung.34868	0	.	30600904	30601464	0	1	560	0
chr10	30632963	30633699	HeLa_polyA+_Chen.6598	0	.	30632963	30633699	0	1	736	0
chr10	30633845	30634402	CD4_Plagnol_resting.12003	0	.	30633845	30634402	0	1	557	0
chr10	30634651	30635410	HepG2_Caltech_ENCODE.6601	0	.	30634651	30635410	0	1	759	0
chr10	30634970	30635451	H9_polyA+.8513	0	.	30634970	30635451	0	1	481	0
chr10	30800450	30803120	REMC_LuminalBreast.19072	0	.	30800450	30803120	0	1	2670	0
chr10	30800827	30802451	REMC_MyoepithelialBreast.17711	0	.	30800827	30802451	0	1	1624	0
chr10	30801229	30803121	REMC_BreastStem.9819	0	.	30801229	30803121	0	1	1892	0
chr10	30803185	30803979	REMC_BreastStem.9820	0	.	30803185	30803979	0	1	794	0
chr10	30804154	30804605	REMC_BreastStem.9821	0	.	30804154	30804605	0	1	451	0
chr10	30804675	30807489	REMC_BreastStem.9822	0	.	30804675	30807489	0	1	2814	0
chr10	30805695	30806578	REMC_LuminalBreast.19075	0	.	30805695	30806578	0	1	883	0
chr10	30858311	30865908	B_cells_Cheung.34930	0	+	30858311	30865908	0	4	466,84,2334,556	0,2936,4579,7041
chr10	30858615	30866016	B_Cells_Pritchard.578785	0	+	30858615	30866016	0	5	173,28,276,1601,1065	0,2258,3852,4388,6336
chr10	30871827	30873248	B_cells_Cheung.34943	0	.	30871827	30873248	0	1	1421	0
chr10	30918548	30919000	B_Cells_Pritchard.578757	0	.	30918548	30919000	0	1	452	0
chr10	30967008	31046204	XR_037453	0	+	30967008	31046204	0	32	70,97,154,11,138,96,82,78,72,86,122,157,115,89,49,149,91,86,181,172,159,167,126,147,173,149,278,157,147,127,157,88	0,3160,4759,9330,9341,21856,22452,24265,24422,25481,26009,29949,33491,37080,37480,47187,51164,51340,52997,55421,57845,59301,60042,60295,62012,65444,66338,71223,73287,74483,78852,79108
chr10	30991274	31046204	XR_038087	0	+	30991274	31046204	0	25	65,72,66,115,83,49,149,91,86,181,172,159,167,126,147,173,149,278,95,84,157,147,127,157,88	0,156,5986,9225,11198,13214,22921,26898,27074,28731,31155,33579,35035,35776,36029,37746,41178,42072,43668,44441,46957,49021,50217,54586,54842
chr10	30991274	31046204	XR_017086	0	+	30991274	31046204	0	25	65,72,66,115,83,49,149,91,86,181,172,159,167,126,147,177,146,278,95,84,157,147,127,157,88	0,156,5986,9225,11198,13214,22921,26898,27074,28731,31155,33579,35035,35776,36029,37746,41181,42072,43668,44441,46957,49021,50217,54586,54842
chr10	31000500	31046201	ENST00000422642	0	+	31000500	31046201	0	18	91,148,90,87,178,173,156,137,125,146,176,145,277,156,141,126,156,84	0,13696,17673,17849,19508,21930,24356,25810,26551,26804,28521,31956,32847,37732,39796,40992,45361,45617
chr10	31017003	31017886	REMC_BreastStem.9835	0	.	31017003	31017886	0	1	883	0
chr10	31020281	31021409	B_Cells_Pritchard.579023	0	.	31020281	31021409	0	1	1128	0
chr10	31021208	31045948	HIT000497318	0	+	31021208	31045948	0	10	24,156,137,399,176,145,277,156,126,87	0,3648,5102,5843,7813,11248,12139,17024,20284,24653
chr10	31025591	31032574	HIT000429010	0	-	31025591	31032574	0	3	864,65,227	0,4015,6756
chr10	31027276	31041578	ENST00000429171	0	+	31027276	31041578	0	6	174,176,145,277,156,86	0,1745,5180,6071,10956,14216
chr10	31045993	31046495	B_cells_Cheung.34978	0	.	31045993	31046495	0	1	502	0
chr10	31081755	31082297	B_Cells_Pritchard.579223	0	.	31081755	31082297	0	1	542	0
chr10	31082432	31083608	B_Cells_Pritchard.579225	0	.	31082432	31083608	0	1	1176	0
chr10	31082951	31083378	B_cells_Cheung.34988	0	.	31082951	31083378	0	1	427	0
chr10	31111199	31111720	B_Cells_Pritchard.579285	0	.	31111199	31111720	0	1	521	0
chr10	31140392	31141094	prostate_carcinoma.18039	0	.	31140392	31141094	0	1	702	0
chr10	31146839	31147421	A549_Myers.12836	0	.	31146839	31147421	0	1	582	0
chr10	31160774	31163161	Rinn_00018469	0	-	31160774	31163161	0	2	1782,107	0,2280
chr10	31160907	31162558	MIP101.12360	0	.	31160907	31162558	0	1	1651	0
chr10	31160908	31163877	prostate_carcinoma.18040	0	.	31160908	31163877	0	1	2969	0
chr10	31161089	31163208	B_Cells_Pritchard.579493	0	.	31161089	31163208	0	1	2119	0
chr10	31167661	31168900	prostate_carcinoma.18044	0	.	31167661	31168900	0	1	1239	0
chr10	31167992	31168798	B_Cells_Pritchard.579515	0	.	31167992	31168798	0	1	806	0
chr10	31412779	31413168	B_Cells_Pritchard.580277	0	.	31412779	31413168	0	1	389	0
chr10	31462785	31464060	B_Cells_Pritchard.580413	0	.	31462785	31464060	0	1	1275	0
chr10	31462873	31463783	B_cells_Cheung.35027	0	.	31462873	31463783	0	1	910	0
chr10	31463055	31463882	H1_polyA+.21210	0	.	31463055	31463882	0	1	827	0
chr10	31574660	31574977	B_cells_Cheung.35101	0	.	31574660	31574977	0	1	317	0
chr10	31597420	31598256	B_Cells_Pritchard.580881	0	.	31597420	31598256	0	1	836	0
chr10	31641062	31643627	B_cells_Cheung.36833	0	.	31641062	31643627	0	1	2565	0
chr10	31926608	31927318	prostate_carcinoma.18078	0	.	31926608	31927318	0	1	710	0
chr10	31931392	31931872	A549_Myers.12857	0	.	31931392	31931872	0	1	480	0
chr10	31931677	31932593	REMC_LuminalBreast.19133	0	.	31931677	31932593	0	1	916	0
chr10	31931720	31932660	REMC_BreastStem.9866	0	.	31931720	31932660	0	1	940	0
chr10	31931720	31934140	REMC_BreastStem.9867	0	+	31931720	31934140	0	2	533,576	0,1844
chr10	31931742	31932374	REMC_MyoepithelialBreast.17761	0	.	31931742	31932374	0	1	632	0
chr10	31931850	31932519	prostate_carcinoma.18079	0	.	31931850	31932519	0	1	669	0
chr10	31931943	31932451	H1_polyA+.21222	0	.	31931943	31932451	0	1	508	0
chr10	31932010	31932766	B_Cells_Pritchard.581803	0	.	31932010	31932766	0	1	756	0
chr10	31932031	31933026	A549_Myers.12858	0	.	31932031	31933026	0	1	995	0
chr10	31932083	31934801	HIT000045048	0	-	31932083	31934801	0	1	2718	0
chr10	31932780	31935058	H1_polyA+.21223	0	.	31932780	31935058	0	1	2278	0
chr10	31932877	31934323	prostate_carcinoma.18080	0	.	31932877	31934323	0	1	1446	0
chr10	31933652	31934704	REMC_LuminalBreast.19134	0	.	31933652	31934704	0	1	1052	0
chr10	32021782	32023619	melanoma_Garraway_short_term_cultures.12922	0	.	32021782	32023619	0	1	1837	0
chr10	32022016	32036322	Rinn_00017946	0	-	32022016	32036322	0	2	265,84	0,14222
chr10	32022030	32039232	B_cells_Cheung.35119	0	-	32022030	32039232	0	2	251,2993	0,14209
chr10	32023651	32024370	prostate_carcinoma.18083	0	.	32023651	32024370	0	1	719	0
chr10	32027958	32030979	melanoma_Garraway_short_term_cultures.12925	0	.	32027958	32030979	0	1	3021	0
chr10	32033560	32035364	B_cells_Cheung.35126	0	.	32033560	32035364	0	1	1804	0
chr10	32033632	32034923	B_Cells_Pritchard.582057	0	.	32033632	32034923	0	1	1291	0
chr10	32035024	32038827	B_Cells_Pritchard.582059	0	.	32035024	32038827	0	1	3803	0
chr10	32035475	32039232	B_cells_Cheung.35121	0	.	32035475	32039232	0	1	3757	0
chr10	32040290	32042508	B_cells_Cheung.35128	0	.	32040290	32042508	0	1	2218	0
chr10	32041493	32042382	B_Cells_Pritchard.582069	0	.	32041493	32042382	0	1	889	0
chr10	32050730	32075344	pHIT000017401	0	+	32050730	32075344	0	2	35,358	0,24256
chr10	32074974	32075293	A549_Myers.12859	0	.	32074974	32075293	0	1	319	0
chr10	32080357	32082622	H1_polyA+.21226	0	.	32080357	32082622	0	1	2265	0
chr10	32086333	32088502	melanoma_Garraway_short_term_cultures.12927	0	.	32086333	32088502	0	1	2169	0
chr10	32086479	32092945	B_Cells_Pritchard.582213	0	-	32086479	32092945	0	3	1271,658,639	0,4067,5827
chr10	32086523	32089053	H1_polyA+.21235	0	.	32086523	32089053	0	1	2530	0
chr10	32086531	32087285	MIP101.12372	0	.	32086531	32087285	0	1	754	0
chr10	32086545	32087308	prostate_normal.10685	0	.	32086545	32087308	0	1	763	0
chr10	32086545	32087855	B_cells_Cheung.35136	0	.	32086545	32087855	0	1	1310	0
chr10	32086673	32091409	prostate_carcinoma.18087	0	-	32086673	32091409	0	2	1077,140	0,4596
chr10	32086862	32087486	REMC_LuminalBreast.19135	0	.	32086862	32087486	0	1	624	0
chr10	32086862	32087244	H9_polyA+.8535	0	.	32086862	32087244	0	1	382	0
chr10	32087395	32090442	MIP101.12373	0	.	32087395	32090442	0	1	3047	0
chr10	32087858	32089008	REMC_MyoepithelialBreast.17762	0	.	32087858	32089008	0	1	1150	0
chr10	32087860	32089070	prostate_carcinoma.18089	0	.	32087860	32089070	0	1	1210	0
chr10	32087908	32089230	B_cells_Cheung.35137	0	.	32087908	32089230	0	1	1322	0
chr10	32087908	32089053	prostate_normal.10687	0	.	32087908	32089053	0	1	1145	0
chr10	32087937	32088553	CD4_Plagnol_activated.12410	0	.	32087937	32088553	0	1	616	0
chr10	32087987	32088527	MCF7_Burge_Thompson.5646	0	.	32087987	32088527	0	1	540	0
chr10	32088022	32088936	liver_polyA+.24963	0	.	32088022	32088936	0	1	914	0
chr10	32088053	32088922	T47D_Burge_Thompson.5193	0	.	32088053	32088922	0	1	869	0
chr10	32088283	32088639	A549_Myers.12860	0	.	32088283	32088639	0	1	356	0
chr10	32088295	32088654	H9_polyA+.8536	0	.	32088295	32088654	0	1	359	0
chr10	32088578	32089014	MCF7_Burge_Thompson.5647	0	.	32088578	32089014	0	1	436	0
chr10	32089263	32091682	H1_polyA+.21236	0	.	32089263	32091682	0	1	2419	0
chr10	32089381	32090693	prostate_carcinoma.18090	0	.	32089381	32090693	0	1	1312	0
chr10	32090189	32090706	brain_AmbionMAQC.8220	0	.	32090189	32090706	0	1	517	0
chr10	32090288	32091230	HepG2_Caltech_ENCODE.6621	0	.	32090288	32091230	0	1	942	0
chr10	32121245	32123046	REMC_LuminalBreast.19145	0	.	32121245	32123046	0	1	1801	0
chr10	32121422	32122092	melanoma_Garraway_short_term_cultures.12929	0	.	32121422	32122092	0	1	670	0
chr10	32263666	32266711	REMC_MyoepithelialBreast.17962	0	.	32263666	32266711	0	1	3045	0
chr10	32264850	32266761	REMC_LuminalBreast.19177	0	.	32264850	32266761	0	1	1911	0
chr10	32264985	32266860	H1_polyA+.21260	0	.	32264985	32266860	0	1	1875	0
chr10	32266845	32272180	REMC_LuminalBreast.19178	0	.	32266845	32272180	0	1	5335	0
chr10	32267251	32270946	H1_polyA+.21261	0	.	32267251	32270946	0	1	3695	0
chr10	32267433	32271514	REMC_MyoepithelialBreast.17963	0	.	32267433	32271514	0	1	4081	0
chr10	32278184	32284087	REMC_MyoepithelialBreast.17967	0	.	32278184	32284087	0	1	5903	0
chr10	32278875	32285939	REMC_LuminalBreast.19181	0	.	32278875	32285939	0	1	7064	0
chr10	32282497	32284663	H1_polyA+.21269	0	.	32282497	32284663	0	1	2166	0
chr10	32283237	32284055	REMC_BreastStem.9870	0	.	32283237	32284055	0	1	818	0
chr10	32286066	32294549	REMC_LuminalBreast.19182	0	.	32286066	32294549	0	1	8483	0
chr10	32286615	32289933	REMC_MyoepithelialBreast.17969	0	.	32286615	32289933	0	1	3318	0
chr10	32287862	32289749	H1_polyA+.21272	0	.	32287862	32289749	0	1	1887	0
chr10	32289996	32291073	H1_polyA+.21273	0	.	32289996	32291073	0	1	1077	0
chr10	32290003	32291074	B_cells_Cheung.35220	0	.	32290003	32291074	0	1	1071	0
chr10	32290052	32291151	REMC_MyoepithelialBreast.17970	0	.	32290052	32291151	0	1	1099	0
chr10	32290913	32302653	MIP101.12404	0	+	32290913	32302653	0	3	96,72,403	0,8029,11337
chr10	32291365	32294336	H1_polyA+.21274	0	.	32291365	32294336	0	1	2971	0
chr10	32291381	32293474	REMC_MyoepithelialBreast.17971	0	.	32291381	32293474	0	1	2093	0
chr10	32294803	32297153	REMC_LuminalBreast.19183	0	.	32294803	32297153	0	1	2350	0
chr10	32294821	32296261	H1_polyA+.21275	0	.	32294821	32296261	0	1	1440	0
chr10	32296354	32297136	H1_polyA+.21238	0	.	32296354	32297136	0	1	782	0
chr10	32300662	32307573	REMC_MyoepithelialBreast.17975	0	.	32300662	32307573	0	1	6911	0
chr10	32300887	32307458	REMC_LuminalBreast.19194	0	.	32300887	32307458	0	1	6571	0
chr10	32303229	32307555	H1_polyA+.21241	0	.	32303229	32307555	0	1	4326	0
chr10	32303513	32304185	HepG2_Caltech_ENCODE.6655	0	.	32303513	32304185	0	1	672	0
chr10	32303518	32304575	B_Cells_Pritchard.582659	0	.	32303518	32304575	0	1	1057	0
chr10	32303604	32305486	REMC_BreastStem.9872	0	.	32303604	32305486	0	1	1882	0
chr10	32303779	32304639	melanoma_Garraway_short_term_cultures.12944	0	.	32303779	32304639	0	1	860	0
chr10	32303826	32304422	B_cells_Cheung.35225	0	.	32303826	32304422	0	1	596	0
chr10	32304722	32305804	B_Cells_Pritchard.582661	0	.	32304722	32305804	0	1	1082	0
chr10	32305911	32307274	HepG2_Caltech_ENCODE.6652	0	.	32305911	32307274	0	1	1363	0
chr10	32305931	32307184	B_cells_Cheung.35227	0	.	32305931	32307184	0	1	1253	0
chr10	32306125	32311925	B_Cells_Pritchard.582665	0	-	32306125	32311925	0	2	794,124	0,5676
chr10	32326151	32327051	REMC_MyoepithelialBreast.17984	0	.	32326151	32327051	0	1	900	0
chr10	32327702	32329591	REMC_BreastStem.9875	0	.	32327702	32329591	0	1	1889	0
chr10	32329868	32330858	B_Cells_Pritchard.587829	0	+	32329868	32330858	0	1	990	0
chr10	32332980	32334899	HepG2_Caltech_ENCODE.6660	0	.	32332980	32334899	0	1	1919	0
chr10	32333043	32333446	prostate_normal.10703	0	.	32333043	32333446	0	1	403	0
chr10	32333785	32334738	CD4_Plagnol_activated.12422	0	.	32333785	32334738	0	1	953	0
chr10	32333848	32334746	MIP101.12407	0	.	32333848	32334746	0	1	898	0
chr10	32334113	32334802	CD4_Plagnol_resting.12050	0	.	32334113	32334802	0	1	689	0
chr10	32334398	32334723	prostate_normal.10704	0	.	32334398	32334723	0	1	325	0
chr10	32563335	32564082	REMC_MyoepithelialBreast.17768	0	.	32563335	32564082	0	1	747	0
chr10	32570459	32572002	REMC_MyoepithelialBreast.17769	0	.	32570459	32572002	0	1	1543	0
chr10	32571193	32572082	REMC_BreastStem.9882	0	.	32571193	32572082	0	1	889	0
chr10	32571480	32572071	B_Cells_Pritchard.583499	0	.	32571480	32572071	0	1	591	0
chr10	32581834	32584052	REMC_MyoepithelialBreast.17771	0	.	32581834	32584052	0	1	2218	0
chr10	33214653	33215201	B_cells_Cheung.35430	0	.	33214653	33215201	0	1	548	0
chr10	33216042	33223550	REMC_LuminalBreast.19259	0	.	33216042	33223550	0	1	7508	0
chr10	33216153	33217414	HIT000097477	0	-	33216153	33217414	0	1	1261	0
chr10	33216188	33223512	REMC_BreastStem.9922	0	.	33216188	33223512	0	1	7324	0
chr10	33216198	33221744	H1_polyA+.21445	0	.	33216198	33221744	0	1	5546	0
chr10	33216201	33218088	CD4_Snyder.14446	0	.	33216201	33218088	0	1	1887	0
chr10	33216207	33218240	MCF10A_Thompson.4230	0	.	33216207	33218240	0	1	2033	0
chr10	33216209	33223405	CD4_Plagnol_activated.12452	0	.	33216209	33223405	0	1	7196	0
chr10	33216212	33217373	B_Cells_Pritchard.585427	0	.	33216212	33217373	0	1	1161	0
chr10	33216221	33218033	BT474_Burge_Thompson.5921	0	.	33216221	33218033	0	1	1812	0
chr10	33216227	33218410	CD4_Plagnol_resting.12086	0	.	33216227	33218410	0	1	2183	0
chr10	33216234	33221806	HepG2_Caltech_ENCODE.6671	0	.	33216234	33221806	0	1	5572	0
chr10	33216251	33218238	melanoma_Garraway_short_term_cultures.12972	0	.	33216251	33218238	0	1	1987	0
chr10	33216264	33217903	MeWo_Garraway.6475	0	.	33216264	33217903	0	1	1639	0
chr10	33216272	33217968	prostate_carcinoma.18231	0	.	33216272	33217968	0	1	1696	0
chr10	33216294	33217411	liver_polyA+.25055	0	.	33216294	33217411	0	1	1117	0
chr10	33216303	33217396	prostate_normal.10740	0	.	33216303	33217396	0	1	1093	0
chr10	33216419	33217438	B_cells_Cheung.35432	0	.	33216419	33217438	0	1	1019	0
chr10	33216436	33217276	pHIT000017413	0	-	33216436	33217276	0	2	195,252	0,588
chr10	33216455	33217390	BT20_Thompson.4140	0	.	33216455	33217390	0	1	935	0
chr10	33216460	33217936	MCF7_Burge_Thompson.5673	0	.	33216460	33217936	0	1	1476	0
chr10	33216487	33217084	lymph_node_Burge.9061	0	.	33216487	33217084	0	1	597	0
chr10	33216500	33216836	breast_Burge.7300	0	.	33216500	33216836	0	1	336	0
chr10	33216550	33217001	adipose_Burge.6995	0	.	33216550	33217001	0	1	451	0
chr10	33216696	33217401	brain_AmbionMAQC.8237	0	.	33216696	33217401	0	1	705	0
chr10	33216708	33217276	pHIT000017411	0	-	33216708	33217276	0	2	206,217	0,351
chr10	33218166	33223423	CD4_Snyder.14447	0	.	33218166	33223423	0	1	5257	0
chr10	33218443	33222086	MCF10A_Thompson.4231	0	.	33218443	33222086	0	1	3643	0
chr10	33218547	33222282	BT474_Burge_Thompson.5923	0	.	33218547	33222282	0	1	3735	0
chr10	33218563	33221398	CD4_Plagnol_resting.12085	0	.	33218563	33221398	0	1	2835	0
chr10	33218691	33223353	melanoma_Garraway_short_term_cultures.12973	0	.	33218691	33223353	0	1	4662	0
chr10	33218745	33221866	prostate_carcinoma.18232	0	.	33218745	33221866	0	1	3121	0
chr10	33219486	33219950	B_Cells_Pritchard.585437	0	.	33219486	33219950	0	1	464	0
chr10	33379103	33383046	K562.9103	0	.	33379103	33383046	0	1	3943	0
chr10	33449041	33449474	A549_Myers.12930	0	.	33449041	33449474	0	1	433	0
chr10	33665758	33667491	prostate_carcinoma.18246	0	.	33665758	33667491	0	1	1733	0
chr10	33677013	33742758	pHIT000108901	0	+	33677013	33742758	0	5	87,60,101,235,195	0,18955,34198,64553,65550
chr10	34337438	34338005	B_Cells_Pritchard.587995	0	.	34337438	34338005	0	1	567	0
chr10	34341871	34342835	BT474_Burge_Thompson.5937	0	.	34341871	34342835	0	1	964	0
chr10	35145459	35145817	A549_Myers.13016	0	.	35145459	35145817	0	1	358	0
chr10	35152746	35153887	REMC_LuminalBreast.19319	0	.	35152746	35153887	0	1	1141	0
chr10	35152858	35153431	B_Cells_Pritchard.590417	0	.	35152858	35153431	0	1	573	0
chr10	35228964	35229674	B_Cells_Pritchard.590671	0	.	35228964	35229674	0	1	710	0
chr10	35264905	35265508	B_Cells_Pritchard.590799	0	.	35264905	35265508	0	1	603	0
chr10	35286438	35286765	A549_Myers.13023	0	.	35286438	35286765	0	1	327	0
chr10	35297828	35298831	REMC_LuminalBreast.19322	0	.	35297828	35298831	0	1	1003	0
chr10	35298961	35305322	REMC_LuminalBreast.19323	0	.	35298961	35305322	0	1	6361	0
chr10	35305378	35306071	REMC_LuminalBreast.19324	0	.	35305378	35306071	0	1	693	0
chr10	35305422	35305905	REMC_MyoepithelialBreast.17906	0	.	35305422	35305905	0	1	483	0
chr10	35306914	35308257	REMC_LuminalBreast.19326	0	.	35306914	35308257	0	1	1343	0
chr10	35307138	35308226	REMC_MyoepithelialBreast.17907	0	.	35307138	35308226	0	1	1088	0
chr10	35313305	35315814	REMC_LuminalBreast.19328	0	.	35313305	35315814	0	1	2509	0
chr10	35314679	35315574	REMC_MyoepithelialBreast.17910	0	.	35314679	35315574	0	1	895	0
chr10	35315940	35316822	REMC_LuminalBreast.19329	0	.	35315940	35316822	0	1	882	0
chr10	35316873	35319622	REMC_LuminalBreast.19330	0	.	35316873	35319622	0	1	2749	0
chr10	35326560	35326950	B_Cells_Pritchard.591059	0	+	35326560	35326950	0	1	390	0
chr10	35328985	35330347	REMC_LuminalBreast.19333	0	.	35328985	35330347	0	1	1362	0
chr10	35551718	35553129	REMC_MyoepithelialBreast.17993	0	.	35551718	35553129	0	1	1411	0
chr10	35552565	35552898	A549_Myers.13040	0	.	35552565	35552898	0	1	333	0
chr10	35553079	35553706	B_Cells_Pritchard.591609	0	.	35553079	35553706	0	1	627	0
chr10	35553268	35554530	REMC_MyoepithelialBreast.17994	0	.	35553268	35554530	0	1	1262	0
chr10	35902332	35905661	REMC_MyoepithelialBreast.18089	0	.	35902332	35905661	0	1	3329	0
chr10	35903156	35905456	REMC_LuminalBreast.19379	0	.	35903156	35905456	0	1	2300	0
chr10	35912952	35914847	MIP101.12607	0	.	35912952	35914847	0	1	1895	0
chr10	35913465	35917658	REMC_LuminalBreast.19383	0	.	35913465	35917658	0	1	4193	0
chr10	35914285	35914707	A549_Myers.13061	0	.	35914285	35914707	0	1	422	0
chr10	35917470	35918267	REMC_MyoepithelialBreast.18095	0	.	35917470	35918267	0	1	797	0
chr10	35942433	35943676	REMC_MyoepithelialBreast.18064	0	.	35942433	35943676	0	1	1243	0
chr10	35948550	35950126	REMC_BreastStem.10002	0	.	35948550	35950126	0	1	1576	0
chr10	35971450	35972059	NEC_from_H9.13879	0	.	35971450	35972059	0	1	609	0
chr10	35972341	35973332	REMC_MyoepithelialBreast.18071	0	.	35972341	35973332	0	1	991	0
chr10	35972659	35973215	H9_polyA+.8608	0	.	35972659	35973215	0	1	556	0
chr10	35975355	35976871	MIP101.12611	0	.	35975355	35976871	0	1	1516	0
chr10	35975559	35976429	REMC_MyoepithelialBreast.18073	0	.	35975559	35976429	0	1	870	0
chr10	35975623	35976019	prostate_carcinoma.18429	0	.	35975623	35976019	0	1	396	0
chr10	35981276	35994405	prostate_carcinoma.18434	0	+	35981276	35994405	0	2	24,874	0,12255
chr10	35988376	35989404	MIP101.12612	0	.	35988376	35989404	0	1	1028	0
chr10	35992422	35994405	prostate_carcinoma.18433	0	.	35992422	35994405	0	1	1983	0
chr10	35992861	35995002	H1_polyA+.21524	0	.	35992861	35995002	0	1	2141	0
chr10	35992984	35994220	REMC_MyoepithelialBreast.18075	0	.	35992984	35994220	0	1	1236	0
chr10	35995997	35996669	prostate_carcinoma.18432	0	.	35995997	35996669	0	1	672	0
chr10	36087419	36089561	HIT000095054	0	-	36087419	36089561	0	1	2142	0
chr10	36093927	36094311	A549_Myers.13067	0	.	36093927	36094311	0	1	384	0
chr10	36123276	36125062	prostate_carcinoma.18449	0	.	36123276	36125062	0	1	1786	0
chr10	36127354	36130187	prostate_carcinoma.18453	0	.	36127354	36130187	0	1	2833	0
chr10	36136784	36139314	prostate_carcinoma.18440	0	.	36136784	36139314	0	1	2530	0
chr10	36156719	36157077	B_cells_Cheung.35980	0	.	36156719	36157077	0	1	358	0
chr10	36201175	36201689	B_Cells_Pritchard.593521	0	.	36201175	36201689	0	1	514	0
chr10	36205039	36205537	B_cells_Cheung.35987	0	.	36205039	36205537	0	1	498	0
chr10	37227905	37229303	BT474_Burge_Thompson.5963	0	.	37227905	37229303	0	1	1398	0
chr10	37573517	37573984	A549_Myers.13092	0	.	37573517	37573984	0	1	467	0
chr10	37690557	37692652	REMC_LuminalBreast.22814	0	.	37690557	37692652	0	1	2095	0
chr10	37694082	37701783	REMC_LuminalBreast.22815	0	.	37694082	37701783	0	1	7701	0
chr10	37702906	37703496	prostate_carcinoma.18556	0	.	37702906	37703496	0	1	590	0
chr10	37710213	37711067	prostate_carcinoma.18561	0	.	37710213	37711067	0	1	854	0
chr10	37713054	37713649	prostate_carcinoma.18562	0	.	37713054	37713649	0	1	595	0
chr10	37717877	37722796	REMC_LuminalBreast.22816	0	.	37717877	37722796	0	1	4919	0
chr10	37719819	37722746	prostate_carcinoma.18567	0	.	37719819	37722746	0	1	2927	0
chr10	37727471	37736390	REMC_LuminalBreast.22818	0	.	37727471	37736390	0	1	8919	0
chr10	37736866	37737536	REMC_LuminalBreast.19653	0	.	37736866	37737536	0	1	670	0
chr10	37737687	37742141	REMC_LuminalBreast.19654	0	.	37737687	37742141	0	1	4454	0
chr10	37742493	37747029	REMC_LuminalBreast.19655	0	.	37742493	37747029	0	1	4536	0
chr10	37783440	37786912	REMC_LuminalBreast.19659	0	.	37783440	37786912	0	1	3472	0
chr10	37783825	37784550	prostate_carcinoma.18598	0	.	37783825	37784550	0	1	725	0
chr10	37790498	37795853	REMC_LuminalBreast.19662	0	.	37790498	37795853	0	1	5355	0
chr10	37790506	37791699	prostate_carcinoma.18605	0	.	37790506	37791699	0	1	1193	0
chr10	37804878	37807801	REMC_LuminalBreast.19668	0	.	37804878	37807801	0	1	2923	0
chr10	38055012	38055661	prostate_carcinoma.18478	0	.	38055012	38055661	0	1	649	0
chr10	38055016	38055655	HepG2_Caltech_ENCODE.6721	0	.	38055016	38055655	0	1	639	0
chr10	38056717	38057635	HepG2_Caltech_ENCODE.6722	0	.	38056717	38057635	0	1	918	0
chr10	38057791	38058932	HepG2_Caltech_ENCODE.6723	0	.	38057791	38058932	0	1	1141	0
chr10	38067659	38068121	A549_Myers.13111	0	.	38067659	38068121	0	1	462	0
chr10	38071795	38078686	prostate_carcinoma.18480	0	.	38071795	38078686	0	1	6891	0
chr10	38071806	38081980	HepG2_Caltech_ENCODE.6724	0	.	38071806	38081980	0	1	10174	0
chr10	38076693	38081584	REMC_LuminalBreast.19674	0	.	38076693	38081584	0	1	4891	0
chr10	38076695	38078014	prostate_normal.10834	0	.	38076695	38078014	0	1	1319	0
chr10	38077116	38078011	REMC_MyoepithelialBreast.18106	0	.	38077116	38078011	0	1	895	0
chr10	38077750	38078590	MIP101.12627	0	.	38077750	38078590	0	1	840	0
chr10	38082086	38084628	HepG2_Caltech_ENCODE.6725	0	.	38082086	38084628	0	1	2542	0
chr10	38082120	38082658	MIP101.12630	0	.	38082120	38082658	0	1	538	0
chr10	38082121	38082528	prostate_carcinoma.18483	0	.	38082121	38082528	0	1	407	0
chr10	38085747	38089641	HepG2_Caltech_ENCODE.6728	0	.	38085747	38089641	0	1	3894	0
chr10	38085983	38089292	REMC_LuminalBreast.19675	0	.	38085983	38089292	0	1	3309	0
chr10	38086725	38087859	REMC_MyoepithelialBreast.18114	0	.	38086725	38087859	0	1	1134	0
chr10	38088173	38089003	B_cells_Cheung.36034	0	-	38088173	38089003	0	2	263,222	0,608
chr10	38102114	38103195	REMC_MyoepithelialBreast.18115	0	.	38102114	38103195	0	1	1081	0
chr10	38102201	38103196	MIP101.12648	0	.	38102201	38103196	0	1	995	0
chr10	38824655	38825606	REMC_BreastStem.10066	0	.	38824655	38825606	0	1	951	0
chr10	38854523	38858841	B_Cells_Pritchard.598541	0	-	38854523	38858841	0	3	181,496,307	0,3514,4011
chr10	38855648	38856080	B_cells_Cheung.36226	0	.	38855648	38856080	0	1	432	0
chr10	38856140	38856474	B_cells_Cheung.36228	0	.	38856140	38856474	0	1	334	0
chr10	38856145	38857399	REMC_MyoepithelialBreast.18172	0	.	38856145	38857399	0	1	1254	0
chr10	38856579	38857414	B_cells_Cheung.36227	0	.	38856579	38857414	0	1	835	0
chr10	38856839	38857536	REMC_BreastStem.10068	0	.	38856839	38857536	0	1	697	0
chr10	38857090	38857764	BT20_Thompson.4213	0	.	38857090	38857764	0	1	674	0
chr10	38857511	38858021	B_cells_Cheung.36229	0	.	38857511	38858021	0	1	510	0
chr10	38857661	38858671	REMC_BreastStem.10069	0	.	38857661	38858671	0	1	1010	0
chr10	38857814	38858696	REMC_MyoepithelialBreast.18173	0	.	38857814	38858696	0	1	882	0
chr10	38857870	38858808	BT20_Thompson.4214	0	.	38857870	38858808	0	1	938	0
chr10	38858074	38858783	B_cells_Cheung.36230	0	.	38858074	38858783	0	1	709	0
chr10	38973918	39022206	ENST00000452667	0	-	38973918	39022206	0	9	405,136,109,150,106,175,128,143,172	0,4511,5531,9453,10446,31123,44039,45481,48116
chr10	38973922	39022335	XR_038081	0	-	38973922	39022335	0	13	397,13,130,6,103,151,108,148,13,129,144,172,44	0,2629,4506,5525,5533,9448,10440,31118,31760,44034,45476,48111,48369
chr10	38977631	39022206	ENST00000416231	0	-	38977631	39022206	0	10	99,136,109,150,106,121,175,128,143,172	0,798,1818,5740,6733,7310,27410,40326,41768,44403
chr10	41675519	41675913	CD4_Snyder.14587	0	.	41675519	41675913	0	1	394	0
chr10	41675804	41676533	BT474_Burge_Thompson.6006	0	.	41675804	41676533	0	1	729	0
chr10	41675966	41676845	CD4_Snyder.14588	0	.	41675966	41676845	0	1	879	0
chr10	41676691	41677106	BT474_Burge_Thompson.6007	0	.	41676691	41677106	0	1	415	0
chr10	41678025	41678460	melanoma_Garraway_short_term_cultures.13109	0	.	41678025	41678460	0	1	435	0
chr10	41678136	41678472	CD4_Snyder.14589	0	.	41678136	41678472	0	1	336	0
chr10	41680469	41680794	melanoma_Garraway_short_term_cultures.13111	0	.	41680469	41680794	0	1	325	0
chr10	41683365	41683749	BT474_Burge_Thompson.6010	0	.	41683365	41683749	0	1	384	0
chr10	41684638	41684945	melanoma_Garraway_short_term_cultures.13112	0	.	41684638	41684945	0	1	307	0
chr10	41685007	41685432	BT474_Burge_Thompson.6012	0	.	41685007	41685432	0	1	425	0
chr10	41685066	41685431	melanoma_Garraway_short_term_cultures.13113	0	.	41685066	41685431	0	1	365	0
chr10	41690510	41690827	melanoma_Garraway_short_term_cultures.13114	0	.	41690510	41690827	0	1	317	0
chr10	41693933	41694250	BT474_Burge_Thompson.6013	0	.	41693933	41694250	0	1	317	0
chr10	41697128	41697596	melanoma_Garraway_short_term_cultures.13116	0	.	41697128	41697596	0	1	468	0
chr10	41697736	41698110	melanoma_Garraway_short_term_cultures.13117	0	.	41697736	41698110	0	1	374	0
chr10	41700732	41701073	BT474_Burge_Thompson.6016	0	.	41700732	41701073	0	1	341	0
chr10	42125191	42125982	brain_AmbionMAQC.8334	0	.	42125191	42125982	0	1	791	0
chr10	42134949	42135616	B_cells_Cheung.36238	0	.	42134949	42135616	0	1	667	0
chr10	42459996	42460407	melanoma_Garraway_short_term_cultures.13172	0	.	42459996	42460407	0	1	411	0
chr10	42461192	42461910	prostate_carcinoma.18667	0	.	42461192	42461910	0	1	718	0
chr10	42463199	42464086	melanoma_Garraway_short_term_cultures.13174	0	.	42463199	42464086	0	1	887	0
chr10	42505668	42506069	prostate_carcinoma.18671	0	.	42505668	42506069	0	1	401	0
chr10	42567841	42573906	prostate_carcinoma.18673	0	+	42567841	42573906	0	2	280,2139	0,3926
chr10	42567874	42568262	H1_polyA+.21620	0	.	42567874	42568262	0	1	388	0
chr10	42568225	42572154	prostate_normal.10931	0	-	42568225	42572154	0	2	446,596	0,3333
chr10	42568357	42570794	XR_041101	0	-	42568357	42570794	0	2	2261,176	0,2261
chr10	42568358	42570657	HIT000017650	0	+	42568358	42570657	0	1	2299	0
chr10	42568426	42569179	prostate_carcinoma.18677	0	.	42568426	42569179	0	1	753	0
chr10	42568590	42568947	A549_Myers.13217	0	.	42568590	42568947	0	1	357	0
chr10	42569122	42570515	H1_polyA+.21621	0	.	42569122	42570515	0	1	1393	0
chr10	42569139	42569838	brain_AmbionMAQC.8354	0	.	42569139	42569838	0	1	699	0
chr10	42569236	42569998	prostate_carcinoma.18678	0	.	42569236	42569998	0	1	762	0
chr10	42570083	42573906	prostate_carcinoma.18674	0	.	42570083	42573906	0	1	3823	0
chr10	42570311	42585324	REMC_BreastStem.10081	0	+	42570311	42585324	0	2	568,592	0,14421
chr10	42570523	42584817	brain_AmbionMAQC.8358	0	+	42570523	42584817	0	2	356,85	0,14209
chr10	42570528	42571053	A549_Myers.13219	0	.	42570528	42571053	0	1	525	0
chr10	42570687	42572574	H1_polyA+.21622	0	.	42570687	42572574	0	1	1887	0
chr10	42572746	42573734	H1_polyA+.21623	0	.	42572746	42573734	0	1	988	0
chr10	42585207	42585921	prostate_carcinoma.18686	0	.	42585207	42585921	0	1	714	0
chr10	42694455	42694793	A549_Myers.13231	0	.	42694455	42694793	0	1	338	0
chr10	42748340	42748717	A549_Myers.13232	0	.	42748340	42748717	0	1	377	0
chr10	42753164	42757741	pHIT000108936	0	+	42753164	42757741	0	4	58,173,66,60	0,717,3574,4517
chr10	42753164	42767029	pHIT000108937	0	+	42753164	42767029	0	5	58,173,66,60,134	0,717,3574,4517,13731
chr10	42793878	42801475	khalil_252	0	.	42793878	42801475	0	6	532,99,150,175,153,293	0,2546,2881,3560,5224,7304
chr10	42794470	42796961	ENST00000431395	0	-	42794470	42796961	0	3	83,277,140	0,1266,2351
chr10	42841421	42842065	prostate_carcinoma.18732	0	.	42841421	42842065	0	1	644	0
chr10	42842844	42843160	A549_Myers.13234	0	.	42842844	42843160	0	1	316	0
chr10	42861133	42861499	A549_Myers.13235	0	.	42861133	42861499	0	1	366	0
chr10	42952297	42953788	HIT000298238	0	-	42952297	42953788	0	1	1491	0
chr10	43007531	43008551	REMC_LuminalBreast.19827	0	.	43007531	43008551	0	1	1020	0
chr10	43101851	43102276	B_Cells_Pritchard.601899	0	.	43101851	43102276	0	1	425	0
chr10	43101943	43102300	A549_Myers.13303	0	.	43101943	43102300	0	1	357	0
chr10	43108667	43109121	A549_Myers.13304	0	.	43108667	43109121	0	1	454	0
chr10	43124114	43138624	pHIT000017452	0	+	43124114	43138624	0	6	97,62,61,135,96,332	0,8952,9512,9800,11552,14178
chr10	43133068	43138624	pHIT000017458	0	+	43133068	43138624	0	5	60,61,135,96,332	0,558,846,2598,5224
chr10	43133611	43138624	pHIT000083015	0	+	43133611	43138624	0	3	76,135,332	0,303,4681
chr10	43138463	43143423	Rinn_00018174	0	+	43138463	43143423	0	2	691,600	0,4360
chr10	43151387	43151771	A549_Myers.13307	0	.	43151387	43151771	0	1	384	0
chr10	43153626	43153944	A549_Myers.13309	0	.	43153626	43153944	0	1	318	0
chr10	43154166	43155057	A549_Myers.13310	0	.	43154166	43155057	0	1	891	0
chr10	43157787	43158322	A549_Myers.13311	0	.	43157787	43158322	0	1	535	0
chr10	43157946	43158560	B_Cells_Pritchard.602071	0	.	43157946	43158560	0	1	614	0
chr10	43158681	43160036	MCF7_Burge_Thompson.5772	0	.	43158681	43160036	0	1	1355	0
chr10	43158720	43159964	T47D_Burge_Thompson.5298	0	.	43158720	43159964	0	1	1244	0
chr10	43159124	43159944	prostate_carcinoma.18767	0	.	43159124	43159944	0	1	820	0
chr10	43159219	43159717	A549_Myers.13313	0	.	43159219	43159717	0	1	498	0
chr10	43159262	43160020	B_Cells_Pritchard.602075	0	+	43159262	43160020	0	1	758	0
chr10	43163334	43164579	prostate_carcinoma.18768	0	.	43163334	43164579	0	1	1245	0
chr10	43171172	43173140	B_Cells_Pritchard.602125	0	-	43171172	43173140	0	3	929,77,210	0,1509,1758
chr10	43174697	43176135	H1_polyA+.21674	0	.	43174697	43176135	0	1	1438	0
chr10	43175553	43176128	B_Cells_Pritchard.602147	0	.	43175553	43176128	0	1	575	0
chr10	43176388	43183361	B_Cells_Pritchard.602149	0	-	43176388	43183361	0	2	1255,63	0,6910
chr10	43176409	43176880	prostate_carcinoma.19327	0	.	43176409	43176880	0	1	471	0
chr10	43176980	43177840	prostate_carcinoma.19328	0	.	43176980	43177840	0	1	860	0
chr10	43177016	43178487	A549_Myers.13317	0	.	43177016	43178487	0	1	1471	0
chr10	43177038	43177430	T47D_Burge_Thompson.5300	0	.	43177038	43177430	0	1	392	0
chr10	43177097	43177709	H1_polyA+.21675	0	.	43177097	43177709	0	1	612	0
chr10	43180321	43181114	prostate_carcinoma.19329	0	.	43180321	43181114	0	1	793	0
chr10	43235357	43238594	B_Cells_Pritchard.611427	0	-	43235357	43238594	0	2	984,50	0,3187
chr10	43235791	43237867	H1_polyA+.21992	0	+	43235791	43237867	0	2	729,744	0,1332
chr10	43236027	43236789	REMC_LuminalBreast.19856	0	.	43236027	43236789	0	1	762	0
chr10	43236028	43238002	brain_AmbionMAQC.8391	0	+	43236028	43238002	0	2	492,879	0,1095
chr10	43236032	43238047	H9_polyA+.8694	0	+	43236032	43238047	0	2	488,924	0,1091
chr10	43236039	43238048	BT474_Burge_Thompson.6085	0	+	43236039	43238048	0	2	481,925	0,1084
chr10	43236039	43237668	MCF7_Burge_Thompson.5916	0	+	43236039	43237668	0	2	481,545	0,1084
chr10	43236039	43236502	CD4_Plagnol_resting.12283	0	.	43236039	43236502	0	1	463	0
chr10	43236039	43236534	HepG2_Caltech_ENCODE.6818	0	.	43236039	43236534	0	1	495	0
chr10	43236041	43238826	Rinn_00018175	0	+	43236041	43238826	0	2	479,1704	0,1081
chr10	43248844	43249836	REMC_LuminalBreast.19858	0	.	43248844	43249836	0	1	992	0
chr10	43249111	43249844	B_cells_Cheung.36466	0	.	43249111	43249844	0	1	733	0
chr10	43350849	43352165	REMC_MyoepithelialBreast.18321	0	.	43350849	43352165	0	1	1316	0
chr10	43363485	43367387	REMC_LuminalBreast.19905	0	.	43363485	43367387	0	1	3902	0
chr10	43435573	43436425	HeLa_polyA+_Chen.6764	0	.	43435573	43436425	0	1	852	0
chr10	43435606	43436665	REMC_MyoepithelialBreast.18344	0	.	43435606	43436665	0	1	1059	0
chr10	43435607	43436720	B_cells_Cheung.36510	0	.	43435607	43436720	0	1	1113	0
chr10	43435712	43436680	REMC_LuminalBreast.19916	0	.	43435712	43436680	0	1	968	0
chr10	43436008	43436616	K562.9272	0	.	43436008	43436616	0	1	608	0
chr10	43436016	43436679	H9_polyA+.8718	0	.	43436016	43436679	0	1	663	0
chr10	43485478	43487252	HIT000022597	0	-	43485478	43487252	0	1	1774	0
chr10	43504774	43505377	A549_Myers.13351	0	.	43504774	43505377	0	1	603	0
chr10	43505594	43506151	A549_Myers.13352	0	.	43505594	43506151	0	1	557	0
chr10	43526775	43527732	prostate_carcinoma.18827	0	.	43526775	43527732	0	1	957	0
chr10	43563545	43563960	A549_Myers.13354	0	.	43563545	43563960	0	1	415	0
chr10	43679637	43679970	A549_Myers.13357	0	.	43679637	43679970	0	1	333	0
chr10	43729351	43729960	Rinn_00017962	0	-	43729351	43729960	0	2	109,358	0,251
chr10	43729352	43729960	ENST00000431987	0	-	43729352	43729960	0	2	108,357	0,251
chr10	43729484	43730006	testes_Burge.9886	0	.	43729484	43730006	0	1	522	0
chr10	43742684	43822321	pHIT000108963	0	+	43742684	43822321	0	7	68,116,68,117,75,27,27	0,27969,43575,69461,70437,71857,79610
chr10	43754456	43759920	ENST00000451929	0	+	43754456	43759920	0	5	1540,256,90,135,105	0,1719,4189,4854,5359
chr10	43754456	43759920	HIT000018009	0	+	43754456	43759920	0	5	1540,256,90,135,105	0,1719,4189,4854,5359
chr10	43758689	43799418	Rinn_00018189	0	+	43758689	43799418	0	4	46,178,1333,3512	0,620,22146,37217
chr10	43795764	43796557	B_Cells_Pritchard.603411	0	.	43795764	43796557	0	1	793	0
chr10	43798918	43799375	brain_AmbionMAQC.8410	0	.	43798918	43799375	0	1	457	0
chr10	43885711	43886138	A549_Myers.13361	0	.	43885711	43886138	0	1	427	0
chr10	44007071	44008288	HepG2_Caltech_ENCODE.6831	0	.	44007071	44008288	0	1	1217	0
chr10	44007071	44010974	HepG2_Caltech_ENCODE.6830	0	-	44007071	44010974	0	4	1128,433,10,1078	0,2185,2640,2825
chr10	44053404	44054227	B_Cells_Pritchard.603979	0	.	44053404	44054227	0	1	823	0
chr10	44060509	44080737	HepG2_Caltech_ENCODE.6833	0	+	44060509	44080737	0	4	170,71,3016,39	0,13697,14429,20189
chr10	44070668	44077351	B_Cells_Pritchard.604079	0	-	44070668	44077351	0	3	732,3244,381	0,1687,6302
chr10	44073929	44077353	B_cells_Cheung.36529	0	-	44073929	44077353	0	2	1670,383	0,3041
chr10	44097647	44098726	REMC_BreastStem.10273	0	.	44097647	44098726	0	1	1079	0
chr10	44110474	44111252	prostate_carcinoma.18830	0	.	44110474	44111252	0	1	778	0
chr10	44110569	44111266	brain_AmbionMAQC.8415	0	.	44110569	44111266	0	1	697	0
chr10	44110668	44111257	prostate_normal.11034	0	.	44110668	44111257	0	1	589	0
chr10	44202119	44202938	H1_polyA+.21742	0	.	44202119	44202938	0	1	819	0
chr10	44284195	44291904	pHIT000108967	0	+	44284195	44291904	0	3	116,111,106	0,4177,7603
chr10	44371405	44372148	BT474_Burge_Thompson.6097	0	.	44371405	44372148	0	1	743	0
chr10	44626576	44628127	prostate_carcinoma.18846	0	.	44626576	44628127	0	1	1551	0
chr10	44627040	44627895	brain_AmbionMAQC.8423	0	.	44627040	44627895	0	1	855	0
chr10	44644230	44645059	prostate_carcinoma.18848	0	.	44644230	44645059	0	1	829	0
chr10	44649130	44650407	prostate_carcinoma.18849	0	.	44649130	44650407	0	1	1277	0
chr10	44649601	44650770	REMC_BreastStem.10132	0	.	44649601	44650770	0	1	1169	0
chr10	44680533	44681676	H1_polyA+.21746	0	.	44680533	44681676	0	1	1143	0
chr10	44684859	44685330	prostate_carcinoma.18851	0	.	44684859	44685330	0	1	471	0
chr10	44691007	44694459	A549_Myers.13378	0	-	44691007	44694459	0	2	55,330	0,3122
chr10	44693703	44694347	B_cells_Cheung.36544	0	.	44693703	44694347	0	1	644	0
chr10	44694012	44694760	B_Cells_Pritchard.605549	0	.	44694012	44694760	0	1	748	0
chr10	44694167	44694982	H1_polyA+.21747	0	.	44694167	44694982	0	1	815	0
chr10	44695027	44695886	B_cells_Cheung.36546	0	.	44695027	44695886	0	1	859	0
chr10	44695420	44696304	B_Cells_Pritchard.605557	0	.	44695420	44696304	0	1	884	0
chr10	44695426	44696775	REMC_LuminalBreast.19925	0	.	44695426	44696775	0	1	1349	0
chr10	44695569	44696273	prostate_carcinoma.18852	0	.	44695569	44696273	0	1	704	0
chr10	44696970	44697851	REMC_LuminalBreast.19926	0	.	44696970	44697851	0	1	881	0
chr10	44697053	44697614	pHIT000017475	0	+	44697053	44697614	0	1	561	0
chr10	44697164	44697613	B_cells_Cheung.36549	0	.	44697164	44697613	0	1	449	0
chr10	44697413	44698556	prostate_carcinoma.18854	0	.	44697413	44698556	0	1	1143	0
chr10	44714782	44716076	REMC_LuminalBreast.19928	0	.	44714782	44716076	0	1	1294	0
chr10	44762802	44771430	REMC_MyoepithelialBreast.18354	0	.	44762802	44771430	0	1	8628	0
chr10	44763002	44763903	prostate_carcinoma.18921	0	.	44763002	44763903	0	1	901	0
chr10	44763470	44770438	B_cells_Cheung.36565	0	.	44763470	44770438	0	1	6968	0
chr10	44763911	44770347	H1_polyA+.21749	0	.	44763911	44770347	0	1	6436	0
chr10	44764006	44766648	prostate_carcinoma.18922	0	.	44764006	44766648	0	1	2642	0
chr10	44764458	44766377	HepG2_Caltech_ENCODE.6842	0	.	44764458	44766377	0	1	1919	0
chr10	44764587	44766526	prostate_normal.11050	0	.	44764587	44766526	0	1	1939	0
chr10	44764922	44766276	MIP101.12779	0	.	44764922	44766276	0	1	1354	0
chr10	44765807	44766188	liver_polyA+.25835	0	.	44765807	44766188	0	1	381	0
chr10	44765879	44766251	BT474_Burge_Thompson.6099	0	.	44765879	44766251	0	1	372	0
chr10	44765969	44766336	H9_polyA+.8735	0	.	44765969	44766336	0	1	367	0
chr10	44767291	44770157	MIP101.12780	0	.	44767291	44770157	0	1	2866	0
chr10	44768351	44769707	prostate_normal.11053	0	.	44768351	44769707	0	1	1356	0
chr10	44769352	44770021	HepG2_Caltech_ENCODE.6845	0	.	44769352	44770021	0	1	669	0
chr10	44771747	44772909	MIP101.12781	0	.	44771747	44772909	0	1	1162	0
chr10	44772726	44774174	HepG2_Caltech_ENCODE.6847	0	.	44772726	44774174	0	1	1448	0
chr10	45014377	45014930	A549_Myers.13407	0	.	45014377	45014930	0	1	553	0
chr10	45020595	45021023	B_Cells_Pritchard.606105	0	.	45020595	45021023	0	1	428	0
chr10	45149039	45149430	B_cells_Cheung.36659	0	.	45149039	45149430	0	1	391	0
chr10	45169364	45170685	H1_polyA+.21935	0	.	45169364	45170685	0	1	1321	0
chr10	45267773	45268499	MIP101.12794	0	.	45267773	45268499	0	1	726	0
chr10	45268951	45269514	B_Cells_Pritchard.606863	0	.	45268951	45269514	0	1	563	0
chr10	45269009	45269689	A549_Myers.13413	0	.	45269009	45269689	0	1	680	0
chr10	45424329	45424752	B_Cells_Pritchard.607391	0	.	45424329	45424752	0	1	423	0
chr10	45424828	45427046	B_cells_Cheung.36675	0	.	45424828	45427046	0	1	2218	0
chr10	45424930	45428652	B_Cells_Pritchard.607395	0	.	45424930	45428652	0	1	3722	0
chr10	45424957	45426444	prostate_carcinoma.18878	0	.	45424957	45426444	0	1	1487	0
chr10	47056706	47058152	prostate_carcinoma.18934	0	.	47056706	47058152	0	1	1446	0
chr10	47056734	47059808	B_cells_Cheung.36744	0	.	47056734	47059808	0	1	3074	0
chr10	47056777	47059887	B_Cells_Pritchard.608449	0	.	47056777	47059887	0	1	3110	0
chr10	47057074	47059549	CD4_Plagnol_activated.12761	0	.	47057074	47059549	0	1	2475	0
chr10	47057174	47059532	CD4_Plagnol_resting.12362	0	.	47057174	47059532	0	1	2358	0
chr10	47057518	47057853	A549_Myers.13483	0	.	47057518	47057853	0	1	335	0
chr10	47059091	47059535	CD4_Snyder.14739	0	.	47059091	47059535	0	1	444	0
chr10	47060246	47061091	B_cells_Cheung.36745	0	.	47060246	47061091	0	1	845	0
chr10	47069013	47069979	B_Cells_Pritchard.608461	0	.	47069013	47069979	0	1	966	0
chr10	47069452	47070403	A549_Myers.13486	0	.	47069452	47070403	0	1	951	0
chr10	47069725	47070873	B_cells_Cheung.36750	0	.	47069725	47070873	0	1	1148	0
chr10	47070173	47070580	B_Cells_Pritchard.608463	0	.	47070173	47070580	0	1	407	0
chr10	47072878	47074810	B_Cells_Pritchard.608473	0	.	47072878	47074810	0	1	1932	0
chr10	47074145	47075722	B_cells_Cheung.36752	0	.	47074145	47075722	0	1	1577	0
chr10	47080947	47082828	B_Cells_Pritchard.608501	0	.	47080947	47082828	0	1	1881	0
chr10	47081094	47081503	B_cells_Cheung.36757	0	.	47081094	47081503	0	1	409	0
chr10	47081610	47082796	B_cells_Cheung.36758	0	.	47081610	47082796	0	1	1186	0
chr10	47086307	47089516	HIT000048300	0	-	47086307	47089516	0	2	1320,1770	0,1439
chr10	47088070	47110794	B_Cells_Pritchard.608519	0	-	47088070	47110794	0	3	2143,76,171	0,7192,22553
chr10	47088172	47089473	B_cells_Cheung.36760	0	.	47088172	47089473	0	1	1301	0
chr10	47089824	47090485	B_cells_Cheung.36762	0	.	47089824	47090485	0	1	661	0
chr10	47092376	47092677	B_cells_Cheung.36763	0	.	47092376	47092677	0	1	301	0
chr10	47094366	47095187	B_cells_Cheung.36764	0	.	47094366	47095187	0	1	821	0
chr10	47095348	47096290	MeI_Garraway.3376	0	.	47095348	47096290	0	1	942	0
chr10	47107359	47107800	B_cells_Cheung.36766	0	.	47107359	47107800	0	1	441	0
chr10	47107888	47109092	B_cells_Cheung.36767	0	.	47107888	47109092	0	1	1204	0
chr10	47109230	47109708	CD4_Plagnol_resting.12369	0	.	47109230	47109708	0	1	478	0
chr10	47109797	47110464	B_cells_Cheung.36769	0	.	47109797	47110464	0	1	667	0
chr10	47125239	47127186	A549_Myers.13489	0	.	47125239	47127186	0	1	1947	0
chr10	47125985	47126403	B_Cells_Pritchard.608549	0	.	47125985	47126403	0	1	418	0
chr10	47126080	47127254	HIT000092465	0	+	47126080	47127254	0	1	1174	0
chr10	47134195	47134698	A549_Myers.13490	0	.	47134195	47134698	0	1	503	0
chr10	47944218	47944706	A549_Myers.13511	0	.	47944218	47944706	0	1	488	0
chr10	47955150	47955589	A549_Myers.13517	0	.	47955150	47955589	0	1	439	0
chr10	48131210	48131976	CD4_Plagnol_activated.12764	0	.	48131210	48131976	0	1	766	0
chr10	49155027	49155911	B_cells_Cheung.36815	0	.	49155027	49155911	0	1	884	0
chr10	49155050	49155513	B_Cells_Pritchard.609753	0	.	49155050	49155513	0	1	463	0
chr10	49156009	49161250	B_Cells_Pritchard.609757	0	+	49156009	49161250	0	4	1859,308,1343,621	0,2609,3129,4620
chr10	49156009	49161250	B_Cells_Pritchard.609759	0	-	49156009	49161250	0	6	1471,283,291,406,145,612	0,1572,2621,3123,4106,4629
chr10	49161760	49163981	B_Cells_Pritchard.609771	0	.	49161760	49163981	0	1	2221	0
chr10	49164096	49167937	B_Cells_Pritchard.609773	0	+	49164096	49167937	0	2	1502,1580	0,2261
chr10	49166357	49167400	B_cells_Cheung.36827	0	.	49166357	49167400	0	1	1043	0
chr10	49318320	49318804	B_Cells_Pritchard.610203	0	.	49318320	49318804	0	1	484	0
chr10	49318345	49318790	IMR90_UCSD_REMC.9350	0	-	49318345	49318790	0	1	445	0
chr10	49318399	49318746	H1_rRNA-depleted_UCSD_REMC.16873	0	.	49318399	49318746	0	1	347	0
chr10	49319777	49322696	REMC_MyoepithelialBreast.18382	0	+	49319777	49322696	0	2	262,1523	0,1396
chr10	49534705	49535694	prostate_carcinoma.18992	0	.	49534705	49535694	0	1	989	0
chr10	49536787	49537594	prostate_carcinoma.18993	0	.	49536787	49537594	0	1	807	0
chr10	49536833	49537383	A549_Myers.13592	0	.	49536833	49537383	0	1	550	0
chr10	49536925	49537403	MB435_Burge.7774	0	.	49536925	49537403	0	1	478	0
chr10	49537086	49537460	brain_AmbionMAQC.8460	0	.	49537086	49537460	0	1	374	0
chr10	49540199	49541353	B_cells_Cheung.36947	0	.	49540199	49541353	0	1	1154	0
chr10	49540223	49552102	B_Cells_Pritchard.611091	0	-	49540223	49552102	0	3	1052,1058,1740	0,1182,10139
chr10	49540223	49560576	B_Cells_Pritchard.611093	0	+	49540223	49560576	0	4	1052,1913,4098,154	0,1326,7573,20199
chr10	49542249	49550475	ENST00000440750	0	-	49542249	49550475	0	2	214,121	0,8105
chr10	49549645	49551348	B_cells_Cheung.36949	0	.	49549645	49551348	0	1	1703	0
chr10	49862199	49864065	REMC_BreastStem.10332	0	.	49862199	49864065	0	1	1866	0
chr10	49862505	49863708	B_cells_Cheung.37033	0	.	49862505	49863708	0	1	1203	0
chr10	49862647	49864187	B_Cells_Pritchard.611687	0	.	49862647	49864187	0	1	1540	0
chr10	49863888	49864262	B_cells_Cheung.37034	0	.	49863888	49864262	0	1	374	0
chr10	49864336	49864804	B_Cells_Pritchard.611689	0	.	49864336	49864804	0	1	468	0
chr10	49878434	49879278	B_Cells_Pritchard.611749	0	.	49878434	49879278	0	1	844	0
chr10	49878780	49879553	REMC_BreastStem.10336	0	.	49878780	49879553	0	1	773	0
chr10	49879418	49879750	B_Cells_Pritchard.611745	0	.	49879418	49879750	0	1	332	0
chr10	49882881	49888240	REMC_BreastStem.10340	0	.	49882881	49888240	0	1	5359	0
chr10	50031014	50031503	B_Cells_Pritchard.612269	0	.	50031014	50031503	0	1	489	0
chr10	50068145	50068737	B_cells_Cheung.37066	0	.	50068145	50068737	0	1	592	0
chr10	50120777	50121082	A549_Myers.13612	0	.	50120777	50121082	0	1	305	0
chr10	50206560	50207263	heart_Burge.5646	0	.	50206560	50207263	0	1	703	0
chr10	50209131	50210290	K562.9353	0	.	50209131	50210290	0	1	1159	0
chr10	50210417	50216495	K562.9352	0	.	50210417	50216495	0	1	6078	0
chr10	50211347	50212552	skeletal_muscle_Burge.5657	0	.	50211347	50212552	0	1	1205	0
chr10	50237440	50239935	B_Cells_Pritchard.612891	0	.	50237440	50239935	0	1	2495	0
chr10	50240037	50240570	B_Cells_Pritchard.612893	0	.	50240037	50240570	0	1	533	0
chr10	50308704	50309064	liver_polyA+.25988	0	.	50308704	50309064	0	1	360	0
chr10	50312948	50328927	REMC_LuminalBreast.20142	0	.	50312948	50328927	0	1	15979	0
chr10	50314000	50318244	H1_polyA+.22014	0	.	50314000	50318244	0	1	4244	0
chr10	50316390	50317723	HeLa_polyA+_Chen.6811	0	.	50316390	50317723	0	1	1333	0
chr10	50317426	50325713	REMC_MyoepithelialBreast.18402	0	.	50317426	50325713	0	1	8287	0
chr10	50318382	50325665	H1_polyA+.22015	0	.	50318382	50325665	0	1	7283	0
chr10	50318406	50321226	B_Cells_Pritchard.613111	0	.	50318406	50321226	0	1	2820	0
chr10	50318595	50321238	B_cells_Cheung.37077	0	.	50318595	50321238	0	1	2643	0
chr10	50318867	50322382	pHIT000017511	0	+	50318867	50322382	0	3	121,82,157	0,1747,3358
chr10	50319194	50320782	MCF10A_Thompson.4348	0	.	50319194	50320782	0	1	1588	0
chr10	50319230	50320556	BT474_Burge_Thompson.6142	0	.	50319230	50320556	0	1	1326	0
chr10	50319521	50320599	brain_AmbionMAQC.8476	0	.	50319521	50320599	0	1	1078	0
chr10	50319653	50323071	prostate_carcinoma.19078	0	.	50319653	50323071	0	1	3418	0
chr10	50319663	50320332	MDAMB468_Thompson.4985	0	.	50319663	50320332	0	1	669	0
chr10	50319691	50320315	MeWo_Garraway.6616	0	.	50319691	50320315	0	1	624	0
chr10	50319855	50320878	REMC_BreastStem.10244	0	.	50319855	50320878	0	1	1023	0
chr10	50320050	50321311	HeLa_polyA+_Chen.6813	0	.	50320050	50321311	0	1	1261	0
chr10	50320265	50320942	K562.9381	0	.	50320265	50320942	0	1	677	0
chr10	50321265	50325196	REMC_BreastStem.10245	0	.	50321265	50325196	0	1	3931	0
chr10	50321412	50333101	B_Cells_Pritchard.613115	0	-	50321412	50333101	0	3	3292,2111,3948	0,4205,7741
chr10	50322816	50325467	melanoma_Garraway_short_term_cultures.13317	0	.	50322816	50325467	0	1	2651	0
chr10	50323723	50325253	B_cells_Cheung.37080	0	.	50323723	50325253	0	1	1530	0
chr10	50324598	50325118	prostate_carcinoma.19083	0	.	50324598	50325118	0	1	520	0
chr10	50325734	50328909	B_cells_Cheung.37083	0	.	50325734	50328909	0	1	3175	0
chr10	50325794	50328902	H1_polyA+.22016	0	.	50325794	50328902	0	1	3108	0
chr10	50327792	50328859	REMC_MyoepithelialBreast.18404	0	.	50327792	50328859	0	1	1067	0
chr10	50327814	50328895	REMC_BreastStem.10247	0	.	50327814	50328895	0	1	1081	0
chr10	50327875	50328771	CD4_Plagnol_activated.12798	0	.	50327875	50328771	0	1	896	0
chr10	50327888	50328683	CD4_Plagnol_resting.12402	0	.	50327888	50328683	0	1	795	0
chr10	50327895	50328828	MDAMB468_Thompson.4992	0	.	50327895	50328828	0	1	933	0
chr10	50327906	50328356	HeLa_polyA+_Chen.6819	0	.	50327906	50328356	0	1	450	0
chr10	50328041	50328838	melanoma_Garraway_short_term_cultures.13319	0	.	50328041	50328838	0	1	797	0
chr10	50329128	50333191	B_cells_Cheung.37084	0	.	50329128	50333191	0	1	4063	0
chr10	50329141	50331214	melanoma_Garraway_short_term_cultures.13320	0	.	50329141	50331214	0	1	2073	0
chr10	50329157	50331805	MDAMB468_Thompson.5002	0	.	50329157	50331805	0	1	2648	0
chr10	50329467	50331949	MIP101.12896	0	.	50329467	50331949	0	1	2482	0
chr10	50329767	50330991	K562.9386	0	.	50329767	50330991	0	1	1224	0
chr10	50330266	50330905	MeWo_Garraway.6617	0	.	50330266	50330905	0	1	639	0
chr10	50330508	50331757	MCF10A_Thompson.4356	0	.	50330508	50331757	0	1	1249	0
chr10	50330531	50331012	HeLa_polyA+_Chen.6820	0	.	50330531	50331012	0	1	481	0
chr10	51157982	51159059	prostate_carcinoma.19114	0	.	51157982	51159059	0	1	1077	0
chr10	51157989	51159068	prostate_normal.11207	0	.	51157989	51159068	0	1	1079	0
chr10	51171939	51172405	prostate_carcinoma.19116	0	.	51171939	51172405	0	1	466	0
chr10	51172917	51173695	prostate_carcinoma.24347	0	.	51172917	51173695	0	1	778	0
chr10	51203800	51204128	prostate_carcinoma.24349	0	.	51203800	51204128	0	1	328	0
chr10	51214284	51215310	REMC_MyoepithelialBreast.18423	0	.	51214284	51215310	0	1	1026	0
chr10	51393122	51393478	H1_polyA+.22046	0	.	51393122	51393478	0	1	356	0
chr10	51393126	51393476	B_cells_Cheung.37175	0	.	51393126	51393476	0	1	350	0
chr10	51393138	51393496	REMC_BreastStem.10254	0	.	51393138	51393496	0	1	358	0
chr10	51393141	51394128	REMC_LuminalBreast.20158	0	.	51393141	51394128	0	1	987	0
chr10	51393144	51394112	REMC_MyoepithelialBreast.18424	0	.	51393144	51394112	0	1	968	0
chr10	51393169	51394082	B_Cells_Pritchard.614481	0	-	51393169	51394082	0	3	301,149,174	0,473,739
chr10	51393646	51394088	K562.9399	0	.	51393646	51394088	0	1	442	0
chr10	51393684	51394101	H1_polyA+.22047	0	.	51393684	51394101	0	1	417	0
chr10	51393699	51394127	REMC_BreastStem.10255	0	.	51393699	51394127	0	1	428	0
chr10	51394250	51394551	REMC_MyoepithelialBreast.18425	0	.	51394250	51394551	0	1	301	0
chr10	51394286	51394766	REMC_LuminalBreast.20159	0	.	51394286	51394766	0	1	480	0
chr10	51394376	51394750	B_cells_Cheung.37178	0	.	51394376	51394750	0	1	374	0
chr10	51395782	51396267	REMC_MyoepithelialBreast.18428	0	.	51395782	51396267	0	1	485	0
chr10	51395783	51396305	REMC_LuminalBreast.20161	0	.	51395783	51396305	0	1	522	0
chr10	51395807	51396307	K562.9400	0	.	51395807	51396307	0	1	500	0
chr10	51395951	51396304	REMC_BreastStem.10258	0	.	51395951	51396304	0	1	353	0
chr10	51395967	51396295	B_cells_Cheung.37183	0	.	51395967	51396295	0	1	328	0
chr10	51395969	51396279	H1_polyA+.22050	0	.	51395969	51396279	0	1	310	0
chr10	51399421	51399835	REMC_LuminalBreast.20166	0	.	51399421	51399835	0	1	414	0
chr10	51399437	51399824	REMC_MyoepithelialBreast.18433	0	.	51399437	51399824	0	1	387	0
chr10	51400046	51400411	REMC_MyoepithelialBreast.18434	0	.	51400046	51400411	0	1	365	0
chr10	51400080	51400645	REMC_LuminalBreast.20167	0	.	51400080	51400645	0	1	565	0
chr10	51407415	51407726	B_cells_Cheung.37199	0	.	51407415	51407726	0	1	311	0
chr10	51448166	51448753	B_Cells_Pritchard.614617	0	-	51448166	51448753	0	1	587	0
chr10	51721653	51726120	REMC_LuminalBreast.20207	0	.	51721653	51726120	0	1	4467	0
chr10	51723325	51725245	B_Cells_Pritchard.615001	0	.	51723325	51725245	0	1	1920	0
chr10	51724597	51724983	A549_Myers.13669	0	.	51724597	51724983	0	1	386	0
chr10	51728311	51732562	REMC_LuminalBreast.20209	0	.	51728311	51732562	0	1	4251	0
chr10	52061401	52066927	B_cells_Cheung.37252	0	.	52061401	52066927	0	1	5526	0
chr10	52061417	52070721	prostate_carcinoma.19187	0	.	52061417	52070721	0	1	9304	0
chr10	52061425	52066418	H1_polyA+.22082	0	.	52061425	52066418	0	1	4993	0
chr10	52061426	52066264	REMC_BreastStem.10291	0	+	52061426	52066264	0	2	96,4090	0,748
chr10	52061433	52063906	REMC_MyoepithelialBreast.18507	0	.	52061433	52063906	0	1	2473	0
chr10	52061493	52063906	REMC_MyoepithelialBreast.18508	0	+	52061493	52063906	0	2	29,1732	0,681
chr10	52061582	52063832	K562.9413	0	.	52061582	52063832	0	1	2250	0
chr10	52061661	52063421	ZR751_Thompson.4848	0	.	52061661	52063421	0	1	1760	0
chr10	52061758	52065869	HepG2_Caltech_ENCODE.6933	0	.	52061758	52065869	0	1	4111	0
chr10	52062058	52065846	MCF7_Burge_Thompson.5867	0	.	52062058	52065846	0	1	3788	0
chr10	52062063	52065667	prostate_normal.11248	0	.	52062063	52065667	0	1	3604	0
chr10	52062091	52065994	T47D_Burge_Thompson.5378	0	.	52062091	52065994	0	1	3903	0
chr10	52062094	52063894	BT474_Burge_Thompson.6164	0	.	52062094	52063894	0	1	1800	0
chr10	52062126	52062933	melanoma_Garraway_short_term_cultures.13377	0	.	52062126	52062933	0	1	807	0
chr10	52062201	52062983	CD4_Plagnol_activated.12888	0	.	52062201	52062983	0	1	782	0
chr10	52062369	52063306	MCF10A_Thompson.4374	0	.	52062369	52063306	0	1	937	0
chr10	52066043	52066458	prostate_normal.11250	0	.	52066043	52066458	0	1	415	0
chr10	52073667	52081319	B_Cells_Pritchard.615851	0	+	52073667	52081319	0	4	65,166,348,1445	0,3845,4011,6207
chr10	52076836	52077167	B_Cells_Pritchard.615897	0	-	52076836	52077167	0	1	331	0
chr10	52077512	52081319	B_Cells_Pritchard.615853	0	-	52077512	52081319	0	2	969,1669	0,2138
chr10	52079731	52081296	B_cells_Cheung.37263	0	.	52079731	52081296	0	1	1565	0
chr10	52079919	52081319	prostate_carcinoma.19194	0	.	52079919	52081319	0	1	1400	0
chr10	52079983	52080448	prostate_normal.11262	0	.	52079983	52080448	0	1	465	0
chr10	53820108	53822072	HepG2_Caltech_ENCODE.6961	0	.	53820108	53822072	0	1	1964	0
chr10	53879429	53880056	HepG2_Caltech_ENCODE.6970	0	.	53879429	53880056	0	1	627	0
chr10	54319056	54319817	MIP101.12964	0	.	54319056	54319817	0	1	761	0
chr10	54376216	54396025	H1_polyA+.22409	0	.	54376216	54396025	0	1	19809	0
chr10	54377597	54377923	B_cells_Cheung.37485	0	.	54377597	54377923	0	1	326	0
chr10	54377992	54378782	B_cells_Cheung.37486	0	.	54377992	54378782	0	1	790	0
chr10	54394197	54394531	H1_rRNA-depleted_UCSD_REMC.17119	0	.	54394197	54394531	0	1	334	0
chr10	54402077	54459890	Rinn_00018936	0	-	54402077	54459890	0	5	1379,137,75,138,215	0,2352,3427,50511,57598
chr10	54455028	54459861	Rinn_00018519	0	-	54455028	54459861	0	2	865,186	0,4647
chr10	54455629	54459813	prostate_normal.11284	0	-	54455629	54459813	0	2	264,156	0,4028
chr10	54915601	54932382	H1_polyA+.22416	0	+	54915601	54932382	0	2	1523,68	0,16713
chr10	54915601	54917912	H1_polyA+.22415	0	.	54915601	54917912	0	1	2311	0
chr10	54915748	54917645	H9_polyA+.8866	0	.	54915748	54917645	0	1	1897	0
chr10	57060858	57061240	A549_Myers.13721	0	.	57060858	57061240	0	1	382	0
chr10	57111326	57112501	H1_polyA+.22433	0	.	57111326	57112501	0	1	1175	0
chr10	57327757	57328131	H1_rRNA-depleted_UCSD_REMC.17134	0	.	57327757	57328131	0	1	374	0
chr10	57793609	57795516	B_cells_Cheung.37665	0	.	57793609	57795516	0	1	1907	0
chr10	57794063	57796185	H1_polyA+.22445	0	.	57794063	57796185	0	1	2122	0
chr10	58524489	58652693	H1_polyA+.22448	0	-	58524489	58652693	0	4	6979,295,1050,316	0,12628,12978,127888
chr10	58647189	58648168	H9_polyA-_Chen.2724	0	.	58647189	58648168	0	1	979	0
chr10	58652099	58652474	H1_rRNA-depleted_UCSD_REMC.17160	0	.	58652099	58652474	0	1	375	0
chr10	59246124	59246753	HeLa_polyA-_Chen.3598	0	.	59246124	59246753	0	1	629	0
chr10	59727180	59727686	REMC_MyoepithelialBreast.18884	0	.	59727180	59727686	0	1	506	0
chr10	59743076	59744998	REMC_MyoepithelialBreast.18599	0	.	59743076	59744998	0	1	1922	0
chr10	59755317	59756796	HIT000089836	0	-	59755317	59756796	0	1	1479	0
chr10	59756658	59757089	A549_Myers.13744	0	.	59756658	59757089	0	1	431	0
chr10	59845252	59846311	REMC_BreastStem.10370	0	.	59845252	59846311	0	1	1059	0
chr10	59855180	59856438	REMC_MyoepithelialBreast.19197	0	.	59855180	59856438	0	1	1258	0
chr10	59856558	59857692	REMC_MyoepithelialBreast.19198	0	.	59856558	59857692	0	1	1134	0
chr10	60295245	60295648	H1_polyA+.22506	0	.	60295245	60295648	0	1	403	0
chr10	60430041	60430509	kidney_Gilad.16874	0	.	60430041	60430509	0	1	468	0
chr10	60495719	60496169	MeI_Garraway.3421	0	.	60495719	60496169	0	1	450	0
chr10	61073661	61074412	H1_polyA+.22517	0	.	61073661	61074412	0	1	751	0
chr10	61180141	61182791	REMC_LuminalBreast.20393	0	.	61180141	61182791	0	1	2650	0
chr10	61192060	61193883	REMC_LuminalBreast.20396	0	.	61192060	61193883	0	1	1823	0
chr10	61193101	61193929	REMC_MyoepithelialBreast.18897	0	.	61193101	61193929	0	1	828	0
chr10	61194741	61195540	REMC_LuminalBreast.20398	0	.	61194741	61195540	0	1	799	0
chr10	61206159	61207228	REMC_LuminalBreast.20401	0	.	61206159	61207228	0	1	1069	0
chr10	61207367	61207920	REMC_MyoepithelialBreast.18906	0	.	61207367	61207920	0	1	553	0
chr10	62231650	62236366	H1_polyA+.22757	0	.	62231650	62236366	0	1	4716	0
chr10	62232574	62237720	B_Cells_Pritchard.634107	0	+	62232574	62237720	0	2	3176,471	0,4675
chr10	62233601	62234595	B_cells_Cheung.37844	0	.	62233601	62234595	0	1	994	0
chr10	62233971	62234728	MeWo_Garraway.6705	0	.	62233971	62234728	0	1	757	0
chr10	62233976	62235683	melanoma_Garraway_short_term_cultures.13469	0	.	62233976	62235683	0	1	1707	0
chr10	62236634	62239553	MIP101.13097	0	.	62236634	62239553	0	1	2919	0
chr10	62237859	62238875	H1_polyA+.22759	0	.	62237859	62238875	0	1	1016	0
chr10	62238165	62238734	B_Cells_Pritchard.634101	0	.	62238165	62238734	0	1	569	0
chr10	62927569	62927999	prostate_carcinoma.19455	0	.	62927569	62927999	0	1	430	0
chr10	63211593	63212003	HeLa_polyA+_Chen.6914	0	.	63211593	63212003	0	1	410	0
chr10	63326896	63327373	A549_Myers.13822	0	.	63326896	63327373	0	1	477	0
chr10	63326955	63327408	B_Cells_Pritchard.636341	0	.	63326955	63327408	0	1	453	0
chr10	63537683	63541721	REMC_LuminalBreast.20571	0	.	63537683	63541721	0	1	4038	0
chr10	63538013	63541763	REMC_BreastStem.10556	0	.	63538013	63541763	0	1	3750	0
chr10	63539087	63540779	melanoma_Garraway_short_term_cultures.13501	0	.	63539087	63540779	0	1	1692	0
chr10	63541985	63543945	REMC_LuminalBreast.20572	0	.	63541985	63543945	0	1	1960	0
chr10	63542012	63544483	REMC_MyoepithelialBreast.18963	0	.	63542012	63544483	0	1	2471	0
chr10	63546344	63547043	REMC_LuminalBreast.20574	0	.	63546344	63547043	0	1	699	0
chr10	63546355	63550276	REMC_MyoepithelialBreast.18965	0	.	63546355	63550276	0	1	3921	0
chr10	63546632	63547847	REMC_BreastStem.10560	0	.	63546632	63547847	0	1	1215	0
chr10	63547239	63547849	REMC_LuminalBreast.20575	0	.	63547239	63547849	0	1	610	0
chr10	63547973	63565035	REMC_LuminalBreast.20576	0	.	63547973	63565035	0	1	17062	0
chr10	63550398	63563054	REMC_MyoepithelialBreast.18966	0	.	63550398	63563054	0	1	12656	0
chr10	63558631	63562802	REMC_BreastStem.10423	0	.	63558631	63562802	0	1	4171	0
chr10	63563124	63564539	REMC_MyoepithelialBreast.18968	0	.	63563124	63564539	0	1	1415	0
chr10	63566363	63576642	REMC_LuminalBreast.20578	0	.	63566363	63576642	0	1	10279	0
chr10	63566487	63567110	REMC_BreastStem.10424	0	.	63566487	63567110	0	1	623	0
chr10	63566519	63567905	REMC_MyoepithelialBreast.18971	0	.	63566519	63567905	0	1	1386	0
chr10	63569408	63576632	REMC_MyoepithelialBreast.18973	0	.	63569408	63576632	0	1	7224	0
chr10	63571625	63574386	REMC_BreastStem.10427	0	.	63571625	63574386	0	1	2761	0
chr10	63580201	63589555	REMC_LuminalBreast.20581	0	.	63580201	63589555	0	1	9354	0
chr10	63593642	63595193	REMC_LuminalBreast.20584	0	.	63593642	63595193	0	1	1551	0
chr10	63593730	63595195	REMC_MyoepithelialBreast.18980	0	.	63593730	63595195	0	1	1465	0
chr10	63595369	63596688	REMC_MyoepithelialBreast.18981	0	.	63595369	63596688	0	1	1319	0
chr10	64153464	64153850	A549_Myers.13837	0	.	64153464	64153850	0	1	386	0
chr10	64162616	64163653	B_Cells_Pritchard.638515	0	.	64162616	64163653	0	1	1037	0
chr10	64184400	64185105	prostate_carcinoma.19549	0	.	64184400	64185105	0	1	705	0
chr10	64184523	64185202	B_Cells_Pritchard.638589	0	.	64184523	64185202	0	1	679	0
chr10	64186059	64186690	B_cells_Cheung.37912	0	.	64186059	64186690	0	1	631	0
chr10	64227969	64228368	B_cells_Cheung.37926	0	.	64227969	64228368	0	1	399	0
chr10	64354165	64368118	A549_Myers.13844	0	-	64354165	64368118	0	2	273,78	0,13875
chr10	64586131	64588623	B_Cells_Pritchard.639549	0	.	64586131	64588623	0	1	2492	0
chr10	64587949	64588603	prostate_carcinoma.19673	0	.	64587949	64588603	0	1	654	0
chr10	64588039	64588613	B_cells_Cheung.38006	0	.	64588039	64588613	0	1	574	0
chr10	64903679	64907127	REMC_LuminalBreast.20664	0	.	64903679	64907127	0	1	3448	0
chr10	64903885	64910340	REMC_MyoepithelialBreast.19646	0	.	64903885	64910340	0	1	6455	0
chr10	64906073	64906960	B_cells_Cheung.39415	0	.	64906073	64906960	0	1	887	0
chr10	64910461	64913907	REMC_MyoepithelialBreast.19647	0	.	64910461	64913907	0	1	3446	0
chr10	64910995	64913952	REMC_LuminalBreast.20668	0	.	64910995	64913952	0	1	2957	0
chr10	64912853	64913922	MIP101.13163	0	.	64912853	64913922	0	1	1069	0
chr10	64913032	64914766	B_cells_Cheung.39419	0	.	64913032	64914766	0	1	1734	0
chr10	64914014	64918881	REMC_MyoepithelialBreast.19648	0	.	64914014	64918881	0	1	4867	0
chr10	64914895	64918225	REMC_LuminalBreast.20670	0	.	64914895	64918225	0	1	3330	0
chr10	64914908	64918256	B_cells_Cheung.39420	0	.	64914908	64918256	0	1	3348	0
chr10	64914936	64917693	B_Cells_Pritchard.640929	0	.	64914936	64917693	0	1	2757	0
chr10	64915023	64917233	REMC_BreastStem.10960	0	.	64915023	64917233	0	1	2210	0
chr10	64915245	64916940	H1_polyA+.23286	0	.	64915245	64916940	0	1	1695	0
chr10	64920286	64943464	REMC_LuminalBreast.20672	0	.	64920286	64943464	0	1	23178	0
chr10	64921024	64934411	khalil_275	0	.	64921024	64934411	0	5	1508,205,865,213,413	0,2407,11048,12190,12974
chr10	64923236	64931343	REMC_MyoepithelialBreast.19650	0	.	64923236	64931343	0	1	8107	0
chr10	64930307	64931326	REMC_BreastStem.10966	0	.	64930307	64931326	0	1	1019	0
chr10	64930314	64931333	H1_polyA+.23296	0	.	64930314	64931333	0	1	1019	0
chr10	64930337	64930940	prostate_carcinoma.19594	0	.	64930337	64930940	0	1	603	0
chr10	64937509	64939362	REMC_BreastStem.10968	0	.	64937509	64939362	0	1	1853	0
chr10	65057116	65059900	REMC_MyoepithelialBreast.19100	0	.	65057116	65059900	0	1	2784	0
chr10	65059177	65059799	REMC_BreastStem.10460	0	.	65059177	65059799	0	1	622	0
chr10	65059593	65061345	B_Cells_Pritchard.641395	0	.	65059593	65061345	0	1	1752	0
chr10	65059723	65060255	A549_Myers.13871	0	.	65059723	65060255	0	1	532	0
chr10	65059984	65061509	prostate_normal.11415	0	.	65059984	65061509	0	1	1525	0
chr10	65060324	65061442	H1_polyA+.22720	0	.	65060324	65061442	0	1	1118	0
chr10	65060456	65061201	T47D_Burge_Thompson.5450	0	.	65060456	65061201	0	1	745	0
chr10	65060591	65061206	melanoma_Garraway_short_term_cultures.13567	0	.	65060591	65061206	0	1	615	0
chr10	65114452	65115747	prostate_carcinoma.19625	0	.	65114452	65115747	0	1	1295	0
chr10	65114553	65115299	prostate_normal.11418	0	.	65114553	65115299	0	1	746	0
chr10	65142121	65142476	A549_Myers.13881	0	.	65142121	65142476	0	1	355	0
chr10	65153732	65155763	H1_polyA+.22723	0	.	65153732	65155763	0	1	2031	0
chr10	65154226	65154536	A549_Myers.13882	0	.	65154226	65154536	0	1	310	0
chr10	65471315	65471746	A549_Myers.13885	0	.	65471315	65471746	0	1	431	0
chr10	67000292	67015903	prostate_carcinoma.19654	0	-	67000292	67015903	0	3	99,86,673	0,894,14938
chr10	67011148	67011758	B_Cells_Pritchard.644687	0	.	67011148	67011758	0	1	610	0
chr10	67015090	67016838	B_Cells_Pritchard.644701	0	.	67015090	67016838	0	1	1748	0
chr10	67015131	67015903	prostate_carcinoma.19653	0	.	67015131	67015903	0	1	772	0
chr10	67015167	67015646	MIP101.13196	0	.	67015167	67015646	0	1	479	0
chr10	67015239	67015649	A549_Myers.13898	0	.	67015239	67015649	0	1	410	0
chr10	67015248	67107120	H1_polyA+.22890	0	+	67015248	67107120	0	3	318,126,17562	0,30151,74310
chr10	67015251	67016221	MCF7_Burge_Thompson.5953	0	.	67015251	67016221	0	1	970	0
chr10	67022170	67023745	H1_polyA+.22899	0	.	67022170	67023745	0	1	1575	0
chr10	67025839	67026596	H1_polyA+.22901	0	.	67025839	67026596	0	1	757	0
chr10	67027435	67031092	H1_polyA+.22903	0	.	67027435	67031092	0	1	3657	0
chr10	67031219	67032435	prostate_carcinoma.19656	0	.	67031219	67032435	0	1	1216	0
chr10	67031274	67032714	H1_polyA+.22904	0	.	67031274	67032714	0	1	1440	0
chr10	67031450	67031975	B_Cells_Pritchard.644747	0	.	67031450	67031975	0	1	525	0
chr10	67047794	67051142	H1_polyA+.22907	0	.	67047794	67051142	0	1	3348	0
chr10	67062127	67063095	B_cells_Cheung.38069	0	.	67062127	67063095	0	1	968	0
chr10	67062150	67062729	liver_polyA+.26677	0	.	67062150	67062729	0	1	579	0
chr10	67062150	67063022	B_Cells_Pritchard.644853	0	.	67062150	67063022	0	1	872	0
chr10	67065013	67076217	H1_polyA+.22891	0	.	67065013	67076217	0	1	11204	0
chr10	67070394	67071611	B_Cells_Pritchard.644871	0	.	67070394	67071611	0	1	1217	0
chr10	67071240	67071594	NEC_from_H9.14337	0	.	67071240	67071594	0	1	354	0
chr10	67071280	67072797	MIP101.13214	0	.	67071280	67072797	0	1	1517	0
chr10	67071312	67072137	REMC_MyoepithelialBreast.19112	0	.	67071312	67072137	0	1	825	0
chr10	67081348	67083446	B_Cells_Pritchard.644921	0	.	67081348	67083446	0	1	2098	0
chr10	67081578	67083534	B_cells_Cheung.38081	0	.	67081578	67083534	0	1	1956	0
chr10	67081596	67083466	melanoma_Garraway_short_term_cultures.13580	0	.	67081596	67083466	0	1	1870	0
chr10	67082168	67083456	liver_polyA+.26691	0	.	67082168	67083456	0	1	1288	0
chr10	67082213	67083269	H9_polyA+.8982	0	.	67082213	67083269	0	1	1056	0
chr10	67082594	67083163	prostate_carcinoma.19660	0	.	67082594	67083163	0	1	569	0
chr10	67083693	67085467	melanoma_Garraway_short_term_cultures.13581	0	.	67083693	67085467	0	1	1774	0
chr10	67085751	67089534	H1_polyA+.22911	0	.	67085751	67089534	0	1	3783	0
chr10	67085785	67086775	REMC_LuminalBreast.20725	0	.	67085785	67086775	0	1	990	0
chr10	67085795	67086856	B_Cells_Pritchard.644925	0	.	67085795	67086856	0	1	1061	0
chr10	67085815	67087224	kidney_Gilad.17077	0	+	67085815	67087224	0	2	401,928	0,481
chr10	67085815	67086291	kidney_Gilad.17076	0	.	67085815	67086291	0	1	476	0
chr10	67085815	67087224	liver_polyA+.26692	0	.	67085815	67087224	0	1	1409	0
chr10	67085818	67087307	B_cells_Cheung.38083	0	.	67085818	67087307	0	1	1489	0
chr10	67085843	67086899	REMC_MyoepithelialBreast.19117	0	.	67085843	67086899	0	1	1056	0
chr10	67105440	67109265	MIP101.13231	0	.	67105440	67109265	0	1	3825	0
chr10	67127778	67131542	H1_polyA+.22765	0	.	67127778	67131542	0	1	3764	0
chr10	67128506	67131488	MIP101.13239	0	.	67128506	67131488	0	1	2982	0
chr10	67153433	67154312	H1_polyA+.22773	0	.	67153433	67154312	0	1	879	0
chr10	67157393	67162109	H1_polyA+.22774	0	.	67157393	67162109	0	1	4716	0
chr10	67162381	67164241	H1_polyA+.22775	0	.	67162381	67164241	0	1	1860	0
chr10	67162841	67163440	B_cells_Cheung.38106	0	.	67162841	67163440	0	1	599	0
chr10	67189360	67190622	B_cells_Cheung.38124	0	.	67189360	67190622	0	1	1262	0
chr10	67206416	67211328	H1_polyA+.22780	0	.	67206416	67211328	0	1	4912	0
chr10	67206449	67211254	B_cells_Cheung.38137	0	.	67206449	67211254	0	1	4805	0
chr10	67225912	67226933	B_cells_Cheung.38149	0	.	67225912	67226933	0	1	1021	0
chr10	67225954	67226752	B_Cells_Pritchard.645363	0	.	67225954	67226752	0	1	798	0
chr10	67237725	67240359	B_cells_Cheung.38165	0	.	67237725	67240359	0	1	2634	0
chr10	67241757	67242241	B_cells_Cheung.38169	0	.	67241757	67242241	0	1	484	0
chr10	67241786	67242515	B_Cells_Pritchard.645483	0	+	67241786	67242515	0	3	209,71,164	0,264,565
chr10	67247576	67248136	B_cells_Cheung.38515	0	.	67247576	67248136	0	1	560	0
chr10	67281395	67282807	B_cells_Cheung.38536	0	.	67281395	67282807	0	1	1412	0
chr10	67281454	67282103	B_Cells_Pritchard.645577	0	.	67281454	67282103	0	1	649	0
chr10	67287990	67289184	B_cells_Cheung.38540	0	.	67287990	67289184	0	1	1194	0
chr10	67305990	67306334	B_cells_Cheung.38554	0	.	67305990	67306334	0	1	344	0
chr10	67306006	67306422	B_Cells_Pritchard.645615	0	.	67306006	67306422	0	1	416	0
chr10	67306642	67307639	B_Cells_Pritchard.645617	0	.	67306642	67307639	0	1	997	0
chr10	67306681	67307504	B_cells_Cheung.38556	0	.	67306681	67307504	0	1	823	0
chr10	67315272	67320072	B_cells_Cheung.38563	0	.	67315272	67320072	0	1	4800	0
chr10	69279090	69280030	prostate_carcinoma.19708	0	.	69279090	69280030	0	1	940	0
chr10	69279100	69279973	T47D_Burge_Thompson.5459	0	.	69279100	69279973	0	1	873	0
chr10	69279182	69280062	H1_polyA+.22887	0	.	69279182	69280062	0	1	880	0
chr10	69285623	69286836	H1_polyA+.22888	0	.	69285623	69286836	0	1	1213	0
chr10	69646791	69648254	HeLa_polyA+_Chen.6937	0	.	69646791	69648254	0	1	1463	0
chr10	69647384	69648251	REMC_LuminalBreast.20759	0	.	69647384	69648251	0	1	867	0
chr10	69650627	69651670	HeLa_polyA+_Chen.6938	0	.	69650627	69651670	0	1	1043	0
chr10	69652000	69653330	HeLa_polyA+_Chen.6941	0	.	69652000	69653330	0	1	1330	0
chr10	69667813	69668520	liver_polyA+.26868	0	.	69667813	69668520	0	1	707	0
chr10	69677556	69678688	liver_polyA+.26874	0	-	69677556	69678688	0	2	545,62	0,1070
chr10	69695795	69700275	REMC_LuminalBreast.20762	0	.	69695795	69700275	0	1	4480	0
chr10	69696805	69699479	H1_polyA+.23101	0	.	69696805	69699479	0	1	2674	0
chr10	69698375	69698785	kidney_Gilad.17207	0	.	69698375	69698785	0	1	410	0
chr10	69700402	69707755	REMC_LuminalBreast.20763	0	.	69700402	69707755	0	1	7353	0
chr10	69702176	69702758	prostate_carcinoma.19813	0	.	69702176	69702758	0	1	582	0
chr10	69702178	69703908	H1_polyA+.23103	0	.	69702178	69703908	0	1	1730	0
chr10	69702215	69702895	MIP101.13475	0	.	69702215	69702895	0	1	680	0
chr10	69704180	69704813	H1_polyA+.23104	0	.	69704180	69704813	0	1	633	0
chr10	69704181	69704784	prostate_carcinoma.19814	0	.	69704181	69704784	0	1	603	0
chr10	69838705	69839821	B_cells_Cheung.38328	0	.	69838705	69839821	0	1	1116	0
chr10	69840167	69841243	B_Cells_Pritchard.655933	0	+	69840167	69841243	0	1	1076	0
chr10	69840772	69841295	B_cells_Cheung.38331	0	.	69840772	69841295	0	1	523	0
chr10	69905220	69908459	B_cells_Cheung.38661	0	.	69905220	69908459	0	1	3239	0
chr10	69907359	69909432	REMC_BreastStem.10523	0	.	69907359	69909432	0	1	2073	0
chr10	70232823	70233503	B_cells_Cheung.38576	0	.	70232823	70233503	0	1	680	0
chr10	70448375	70448684	B_cells_Cheung.38705	0	.	70448375	70448684	0	1	309	0
chr10	70448400	70448768	B_Cells_Pritchard.682621	0	-	70448400	70448768	0	1	368	0
chr10	70464142	70465450	REMC_MyoepithelialBreast.19350	0	.	70464142	70465450	0	1	1308	0
chr10	70471880	70473680	B_cells_Cheung.38710	0	.	70471880	70473680	0	1	1800	0
chr10	70472047	70472486	A549_Myers.14037	0	.	70472047	70472486	0	1	439	0
chr10	70490900	70491758	REMC_LuminalBreast.20872	0	.	70490900	70491758	0	1	858	0
chr10	70490920	70493134	B_cells_Cheung.38726	0	.	70490920	70493134	0	1	2214	0
chr10	70498842	70501190	B_cells_Cheung.38732	0	.	70498842	70501190	0	1	2348	0
chr10	70506845	70507228	B_cells_Cheung.38739	0	.	70506845	70507228	0	1	383	0
chr10	70539624	70540863	B_cells_Cheung.38778	0	.	70539624	70540863	0	1	1239	0
chr10	70539962	70541736	B_Cells_Pritchard.651363	0	.	70539962	70541736	0	1	1774	0
chr10	70544483	70547111	B_Cells_Pritchard.651375	0	-	70544483	70547111	0	2	915,47	0,2581
chr10	70865627	70866081	A549_Myers.14083	0	.	70865627	70866081	0	1	454	0
chr10	70941203	70948319	REMC_LuminalBreast.20965	0	.	70941203	70948319	0	1	7116	0
chr10	70947089	70947537	brain_AmbionMAQC.8846	0	.	70947089	70947537	0	1	448	0
chr10	70957263	70960533	REMC_LuminalBreast.20969	0	.	70957263	70960533	0	1	3270	0
chr10	70958007	70958732	B_Cells_Pritchard.652473	0	.	70958007	70958732	0	1	725	0
chr10	70962124	70967670	REMC_LuminalBreast.20971	0	.	70962124	70967670	0	1	5546	0
chr10	70969841	70970642	REMC_LuminalBreast.20973	0	.	70969841	70970642	0	1	801	0
chr10	70970097	70971386	brain_AmbionMAQC.8852	0	.	70970097	70971386	0	1	1289	0
chr10	70970103	70971357	prostate_carcinoma.19931	0	.	70970103	70971357	0	1	1254	0
chr10	70970790	70972487	REMC_LuminalBreast.20974	0	.	70970790	70972487	0	1	1697	0
chr10	70976878	70979303	brain_AmbionMAQC.8771	0	.	70976878	70979303	0	1	2425	0
chr10	70976962	70979246	prostate_carcinoma.19934	0	.	70976962	70979246	0	1	2284	0
chr10	70977137	70977612	prostate_normal.11582	0	.	70977137	70977612	0	1	475	0
chr10	70977713	70979240	prostate_normal.11583	0	.	70977713	70979240	0	1	1527	0
chr10	71004073	71006898	H1_polyA+.23423	0	+	71004073	71006898	0	3	837,119,154	0,1707,2671
chr10	71006034	71006867	B_cells_Cheung.38887	0	.	71006034	71006867	0	1	833	0
chr10	71067446	71076806	REMC_LuminalBreast.20980	0	+	71067446	71076806	0	3	1810,3157,3598	0,2486,5762
chr10	71070245	71076933	MIP101.13407	0	.	71070245	71076933	0	1	6688	0
chr10	71070967	71076122	REMC_MyoepithelialBreast.19394	0	.	71070967	71076122	0	1	5155	0
chr10	71070967	71076122	REMC_MyoepithelialBreast.19395	0	+	71070967	71076122	0	2	2122,2914	0,2241
chr10	71073220	71075262	H9_polyA+.9093	0	.	71073220	71075262	0	1	2042	0
chr10	71073283	71075272	prostate_carcinoma.19942	0	.	71073283	71075272	0	1	1989	0
chr10	71086004	71086374	A549_Myers.14120	0	.	71086004	71086374	0	1	370	0
chr10	71096988	71121535	Rinn_00017837	0	+	71096988	71121535	0	7	163,178,104,131,13,143,1174	0,299,2972,21792,22715,23058,23373
chr10	71112892	71113951	REMC_LuminalBreast.20981	0	.	71112892	71113951	0	1	1059	0
chr10	71159992	71171739	khalil_277	0	.	71159992	71171739	0	13	156,171,98,58,199,235,67,143,104,44,39,73,127	0,746,1276,3118,3685,4059,4963,6517,6803,9484,10042,10574,11620
chr10	71164121	71164596	A549_Myers.14123	0	.	71164121	71164596	0	1	475	0
chr10	71168952	71169297	A549_Myers.14124	0	.	71168952	71169297	0	1	345	0
chr10	71179739	71180228	A549_Myers.14125	0	.	71179739	71180228	0	1	489	0
chr10	71198171	71198509	A549_Myers.14127	0	.	71198171	71198509	0	1	338	0
chr10	71229693	71231437	H1_polyA+.23432	0	-	71229693	71231437	0	2	205,630	0,1114
chr10	71424387	71437598	ENST00000427247	0	-	71424387	71437598	0	3	229,213,82	0,12831,13129
chr10	71449029	71449441	brain_AmbionMAQC.8788	0	.	71449029	71449441	0	1	412	0
chr10	71453976	71454994	REMC_LuminalBreast.20989	0	.	71453976	71454994	0	1	1018	0
chr10	71472232	71473175	brain_AmbionMAQC.8790	0	.	71472232	71473175	0	1	943	0
chr10	71617362	71618117	REMC_LuminalBreast.21014	0	.	71617362	71618117	0	1	755	0
chr10	71618413	71619400	REMC_LuminalBreast.21015	0	.	71618413	71619400	0	1	987	0
chr10	71630323	71630869	B_cells_Cheung.38918	0	.	71630323	71630869	0	1	546	0
chr10	71680838	71681553	prostate_carcinoma.19983	0	.	71680838	71681553	0	1	715	0
chr10	71681065	71681807	B_Cells_Pritchard.654337	0	.	71681065	71681807	0	1	742	0
chr10	71682308	71683556	prostate_carcinoma.19984	0	.	71682308	71683556	0	1	1248	0
chr10	71726277	71726604	A549_Myers.14162	0	.	71726277	71726604	0	1	327	0
chr10	71880187	71881374	REMC_LuminalBreast.21037	0	.	71880187	71881374	0	1	1187	0
chr10	71880327	71881033	REMC_BreastStem.10618	0	.	71880327	71881033	0	1	706	0
chr10	71887950	71888831	A549_Myers.14179	0	.	71887950	71888831	0	1	881	0
chr10	71892352	71892740	A549_Myers.14181	0	.	71892352	71892740	0	1	388	0
chr10	71999339	71999874	B_cells_Cheung.39007	0	.	71999339	71999874	0	1	535	0
chr10	72000237	72002502	H1_polyA+.23578	0	.	72000237	72002502	0	1	2265	0
chr10	72000963	72002596	B_cells_Cheung.39009	0	.	72000963	72002596	0	1	1633	0
chr10	72005132	72006194	B_cells_Cheung.39013	0	.	72005132	72006194	0	1	1062	0
chr10	72009435	72010245	H1_polyA+.23580	0	.	72009435	72010245	0	1	810	0
chr10	72012847	72013346	B_Cells_Pritchard.655083	0	.	72012847	72013346	0	1	499	0
chr10	72323443	72324306	H1_polyA+.23621	0	.	72323443	72324306	0	1	863	0
chr10	72359686	72361820	Rinn_00017840	0	+	72359686	72361820	0	2	1530,435	0,1699
chr10	72359687	72361828	HIT000011637	0	+	72359687	72361828	0	2	1529,442	0,1699
chr10	72359687	72361820	ENST00000415746	0	+	72359687	72361820	0	2	1529,434	0,1699
chr10	72360044	72373768	khalil_280	0	.	72360044	72373768	0	10	104,208,105,137,53,103,184,150,203,225	0,504,1969,5233,9337,9741,10710,11361,12557,13499
chr10	72471830	72516660	khalil_281	0	.	72471830	72516660	0	19	119,197,305,116,185,145,448,224,453,239,195,1026,328,107,117,165,199,105,231	0,232,628,2199,3278,10631,11250,19394,21312,25070,27568,27868,34227,37865,38981,42003,42295,43873,44599
chr10	72733695	72734571	prostate_carcinoma.20068	0	.	72733695	72734571	0	1	876	0
chr10	72741701	72742780	REMC_LuminalBreast.21076	0	.	72741701	72742780	0	1	1079	0
chr10	72742496	72743832	prostate_carcinoma.20069	0	.	72742496	72743832	0	1	1336	0
chr10	72794169	72794872	REMC_BreastStem.10701	0	.	72794169	72794872	0	1	703	0
chr10	72795316	72795736	H9_polyA+.9187	0	.	72795316	72795736	0	1	420	0
chr10	72799297	72800266	prostate_carcinoma.20089	0	.	72799297	72800266	0	1	969	0
chr10	72806458	72807201	B_cells_Cheung.39039	0	.	72806458	72807201	0	1	743	0
chr10	72825814	72826480	Rinn_00018533	0	-	72825814	72826480	0	2	58,253	0,413
chr10	73288005	73288484	A549_Myers.14365	0	.	73288005	73288484	0	1	479	0
chr10	73294951	73295560	B_Cells_Pritchard.658899	0	.	73294951	73295560	0	1	609	0
chr10	73297517	73298438	B_Cells_Pritchard.658909	0	.	73297517	73298438	0	1	921	0
chr10	73303878	73304230	B_cells_Cheung.39078	0	.	73303878	73304230	0	1	352	0
chr10	73308373	73308819	A549_Myers.14370	0	.	73308373	73308819	0	1	446	0
chr10	73310183	73310488	A549_Myers.14371	0	.	73310183	73310488	0	1	305	0
chr10	73318037	73322237	REMC_LuminalBreast.21099	0	.	73318037	73322237	0	1	4200	0
chr10	73318647	73318992	A549_Myers.14374	0	.	73318647	73318992	0	1	345	0
chr10	73318973	73321256	REMC_MyoepithelialBreast.19497	0	.	73318973	73321256	0	1	2283	0
chr10	73330631	73330993	BT474_Burge_Thompson.6352	0	.	73330631	73330993	0	1	362	0
chr10	73449339	73449802	prostate_carcinoma.20129	0	.	73449339	73449802	0	1	463	0
chr10	73453642	73458740	REMC_MyoepithelialBreast.19526	0	.	73453642	73458740	0	1	5098	0
chr10	73453722	73458530	REMC_LuminalBreast.21107	0	.	73453722	73458530	0	1	4808	0
chr10	73454108	73454887	prostate_carcinoma.20130	0	.	73454108	73454887	0	1	779	0
chr10	73454620	73455317	brain_AmbionMAQC.8895	0	.	73454620	73455317	0	1	697	0
chr10	73455011	73456871	prostate_carcinoma.20131	0	.	73455011	73456871	0	1	1860	0
chr10	73474153	73474499	A549_Myers.14398	0	.	73474153	73474499	0	1	346	0
chr10	73483011	73483369	CD4_Plagnol_resting.12859	0	.	73483011	73483369	0	1	358	0
chr10	73485784	73486179	CD4_Plagnol_resting.12862	0	.	73485784	73486179	0	1	395	0
chr10	73486738	73487655	CD4_Plagnol_resting.12863	0	.	73486738	73487655	0	1	917	0
chr10	73521899	73524909	MDAMB468_Thompson.5269	0	.	73521899	73524909	0	1	3010	0
chr10	73521900	73522848	MeI_Garraway.3520	0	.	73521900	73522848	0	1	948	0
chr10	73521911	73522933	MeWo_Garraway.6947	0	.	73521911	73522933	0	1	1022	0
chr10	73521926	73523382	prostate_carcinoma.20161	0	.	73521926	73523382	0	1	1456	0
chr10	73521941	73523344	prostate_normal.11727	0	.	73521941	73523344	0	1	1403	0
chr10	73521941	73523270	ZR751_Thompson.5029	0	.	73521941	73523270	0	1	1329	0
chr10	73521942	73524908	CD4_Plagnol_activated.14869	0	.	73521942	73524908	0	1	2966	0
chr10	73521945	73523194	liver_polyA+.27291	0	+	73521945	73523194	0	2	532,59	0,1190
chr10	73521945	73523326	MDAMB231_Thompson.4570	0	.	73521945	73523326	0	1	1381	0
chr10	73521947	73523234	BT474_Burge_Thompson.6357	0	.	73521947	73523234	0	1	1287	0
chr10	73521951	73523325	MCF10A_Thompson.4534	0	.	73521951	73523325	0	1	1374	0
chr10	73521951	73522895	HepG2_Caltech_ENCODE.7238	0	.	73521951	73522895	0	1	944	0
chr10	73521959	73523246	CD4_Plagnol_resting.12873	0	.	73521959	73523246	0	1	1287	0
chr10	73521969	73523322	HeLa_polyA+_Chen.7116	0	.	73521969	73523322	0	1	1353	0
chr10	73521974	73523351	melanoma_Garraway_short_term_cultures.13816	0	.	73521974	73523351	0	1	1377	0
chr10	73521975	73524871	K562.9811	0	-	73521975	73524871	0	2	358,1416	0,1480
chr10	73521975	73524871	K562.9812	0	.	73521975	73524871	0	1	2896	0
chr10	73521976	73523415	MCF7_Burge_Thompson.6069	0	.	73521976	73523415	0	1	1439	0
chr10	73521978	73523288	brain_AmbionMAQC.9677	0	.	73521978	73523288	0	1	1310	0
chr10	73521980	73522534	H9_polyA+.9212	0	.	73521980	73522534	0	1	554	0
chr10	73522978	73524958	HepG2_Caltech_ENCODE.7239	0	.	73522978	73524958	0	1	1980	0
chr10	73523443	73524836	prostate_carcinoma.20159	0	.	73523443	73524836	0	1	1393	0
chr10	73523444	73524971	HeLa_polyA+_Chen.7114	0	.	73523444	73524971	0	1	1527	0
chr10	73523770	73524914	BT474_Burge_Thompson.6358	0	.	73523770	73524914	0	1	1144	0
chr10	73523844	73524853	MCF10A_Thompson.4533	0	.	73523844	73524853	0	1	1009	0
chr10	73524221	73524884	melanoma_Garraway_short_term_cultures.13818	0	.	73524221	73524884	0	1	663	0
chr10	73670212	73671426	REMC_LuminalBreast.21154	0	.	73670212	73671426	0	1	1214	0
chr10	73670218	73671592	B_cells_Cheung.39124	0	.	73670218	73671592	0	1	1374	0
chr10	73670769	73671346	CD4_Plagnol_resting.12889	0	.	73670769	73671346	0	1	577	0
chr10	73670833	73671352	CD4_Plagnol_activated.13321	0	.	73670833	73671352	0	1	519	0
chr10	73670834	73671344	B_Cells_Pritchard.754945	0	-	73670834	73671344	0	1	510	0
chr10	73672426	73672911	CD4_Plagnol_resting.12892	0	.	73672426	73672911	0	1	485	0
chr10	73672947	73687779	B_Cells_Pritchard.754961	0	-	73672947	73687779	0	2	50,425	0,14407
chr10	73673097	73674868	REMC_LuminalBreast.21155	0	.	73673097	73674868	0	1	1771	0
chr10	73673292	73673874	CD4_Plagnol_resting.12893	0	.	73673292	73673874	0	1	582	0
chr10	73677632	73678642	B_Cells_Pritchard.754983	0	+	73677632	73678642	0	1	1010	0
chr10	73677660	73678274	B_cells_Cheung.39129	0	.	73677660	73678274	0	1	614	0
chr10	73686718	73687770	B_cells_Cheung.39134	0	.	73686718	73687770	0	1	1052	0
chr10	73688451	73688886	B_cells_Cheung.39135	0	.	73688451	73688886	0	1	435	0
chr10	73688506	73688808	A549_Myers.14451	0	.	73688506	73688808	0	1	302	0
chr10	73690159	73691023	A549_Myers.14452	0	.	73690159	73691023	0	1	864	0
chr10	73690828	73691320	B_cells_Cheung.39139	0	.	73690828	73691320	0	1	492	0
chr10	73700494	73701548	B_cells_Cheung.39142	0	.	73700494	73701548	0	1	1054	0
chr10	73710446	73758348	pHIT000017680	0	+	73710446	73758348	0	4	78,23,101,149	0,41088,41511,47753
chr10	73715946	73716666	B_Cells_Pritchard.660225	0	.	73715946	73716666	0	1	720	0
chr10	73721917	73723075	REMC_LuminalBreast.21160	0	.	73721917	73723075	0	1	1158	0
chr10	73722055	73722747	B_cells_Cheung.39149	0	.	73722055	73722747	0	1	692	0
chr10	73722066	73723363	B_Cells_Pritchard.660243	0	.	73722066	73723363	0	1	1297	0
chr10	73723657	73732150	B_Cells_Pritchard.660247	0	-	73723657	73732150	0	5	242,810,1091,1566,458	0,267,1379,2630,8035
chr10	73723921	73726321	B_cells_Cheung.39151	0	.	73723921	73726321	0	1	2400	0
chr10	73724232	73726125	REMC_LuminalBreast.21162	0	.	73724232	73726125	0	1	1893	0
chr10	73726660	73727844	B_cells_Cheung.39153	0	.	73726660	73727844	0	1	1184	0
chr10	73727928	73729141	B_cells_Cheung.39154	0	.	73727928	73729141	0	1	1213	0
chr10	73727996	73729594	REMC_LuminalBreast.21164	0	.	73727996	73729594	0	1	1598	0
chr10	73728890	73729220	A549_Myers.14466	0	.	73728890	73729220	0	1	330	0
chr10	73732843	73734163	REMC_LuminalBreast.21165	0	.	73732843	73734163	0	1	1320	0
chr10	73737902	73741357	REMC_LuminalBreast.21168	0	.	73737902	73741357	0	1	3455	0
chr10	73739336	73739973	B_Cells_Pritchard.660275	0	.	73739336	73739973	0	1	637	0
chr10	73739610	73740546	REMC_BreastStem.10729	0	.	73739610	73740546	0	1	936	0
chr10	73739626	73739976	B_cells_Cheung.39156	0	.	73739626	73739976	0	1	350	0
chr10	73740083	73740476	B_Cells_Pritchard.660277	0	.	73740083	73740476	0	1	393	0
chr10	73740187	73740661	B_cells_Cheung.39157	0	.	73740187	73740661	0	1	474	0
chr10	73744313	73746712	REMC_LuminalBreast.21171	0	.	73744313	73746712	0	1	2399	0
chr10	73744784	73745265	B_cells_Cheung.39161	0	.	73744784	73745265	0	1	481	0
chr10	73744904	73745720	B_Cells_Pritchard.660299	0	+	73744904	73745720	0	1	816	0
chr10	73745128	73746478	REMC_MyoepithelialBreast.19573	0	.	73745128	73746478	0	1	1350	0
chr10	73745134	73746441	REMC_BreastStem.10731	0	.	73745134	73746441	0	1	1307	0
chr10	73746810	73747398	B_Cells_Pritchard.660303	0	+	73746810	73747398	0	1	588	0
chr10	73746858	73747347	A549_Myers.14470	0	.	73746858	73747347	0	1	489	0
chr10	73746938	73749329	REMC_LuminalBreast.21172	0	.	73746938	73749329	0	1	2391	0
chr10	73748019	73751974	B_cells_Cheung.39164	0	.	73748019	73751974	0	1	3955	0
chr10	73748021	73750195	REMC_MyoepithelialBreast.19574	0	.	73748021	73750195	0	1	2174	0
chr10	73749372	73750022	A549_Myers.14471	0	.	73749372	73750022	0	1	650	0
chr10	73749570	73750634	HepG2_Caltech_ENCODE.7253	0	.	73749570	73750634	0	1	1064	0
chr10	73749651	73750073	CD4_Plagnol_resting.12894	0	.	73749651	73750073	0	1	422	0
chr10	73749728	73754252	REMC_LuminalBreast.21173	0	+	73749728	73754252	0	2	3323,1055	0,3469
chr10	73749728	73754252	REMC_LuminalBreast.21174	0	.	73749728	73754252	0	1	4524	0
chr10	73750295	73754249	REMC_MyoepithelialBreast.19575	0	.	73750295	73754249	0	1	3954	0
chr10	73751536	73752631	REMC_BreastStem.10751	0	.	73751536	73752631	0	1	1095	0
chr10	73754381	73755600	REMC_MyoepithelialBreast.19576	0	.	73754381	73755600	0	1	1219	0
chr10	73754444	73755735	REMC_LuminalBreast.21175	0	.	73754444	73755735	0	1	1291	0
chr10	73754465	73756057	REMC_BreastStem.10753	0	.	73754465	73756057	0	1	1592	0
chr10	73754595	73755357	B_cells_Cheung.39165	0	.	73754595	73755357	0	1	762	0
chr10	73756400	73760516	REMC_LuminalBreast.21176	0	.	73756400	73760516	0	1	4116	0
chr10	73756489	73760524	REMC_MyoepithelialBreast.19577	0	.	73756489	73760524	0	1	4035	0
chr10	73757064	73758276	REMC_BreastStem.10754	0	.	73757064	73758276	0	1	1212	0
chr10	73757557	73758605	B_cells_Cheung.39166	0	.	73757557	73758605	0	1	1048	0
chr10	73757628	73758137	A549_Myers.14477	0	.	73757628	73758137	0	1	509	0
chr10	73757663	73759709	CD4_Plagnol_activated.13326	0	.	73757663	73759709	0	1	2046	0
chr10	73759143	73760467	B_cells_Cheung.39167	0	.	73759143	73760467	0	1	1324	0
chr10	73759287	73759838	CD4_Snyder.16030	0	.	73759287	73759838	0	1	551	0
chr10	73759342	73760085	CD4_Plagnol_resting.12896	0	.	73759342	73760085	0	1	743	0
chr10	73787529	73788034	B_cells_Cheung.39175	0	.	73787529	73788034	0	1	505	0
chr10	73789195	73791826	REMC_MyoepithelialBreast.19582	0	.	73789195	73791826	0	1	2631	0
chr10	73789335	73792178	H1_polyA+.23656	0	.	73789335	73792178	0	1	2843	0
chr10	73791995	73792845	REMC_MyoepithelialBreast.19583	0	.	73791995	73792845	0	1	850	0
chr10	73792940	73795605	REMC_BreastStem.10759	0	.	73792940	73795605	0	1	2665	0
chr10	73793910	73795531	B_cells_Cheung.39182	0	.	73793910	73795531	0	1	1621	0
chr10	73794254	73795271	prostate_carcinoma.20243	0	.	73794254	73795271	0	1	1017	0
chr10	73794645	73795260	MIP101.13664	0	.	73794645	73795260	0	1	615	0
chr10	73794645	73795355	HepG2_Caltech_ENCODE.7259	0	.	73794645	73795355	0	1	710	0
chr10	73794663	73795532	B_Cells_Pritchard.660365	0	.	73794663	73795532	0	1	869	0
chr10	74791078	74793903	REMC_BreastStem.10827	0	.	74791078	74793903	0	1	2825	0
chr10	74793091	74793701	CD4_Plagnol_activated.13409	0	.	74793091	74793701	0	1	610	0
chr10	74793092	74793714	CD4_Plagnol_resting.13023	0	.	74793092	74793714	0	1	622	0
chr10	74793291	74793755	B_cells_Cheung.39540	0	.	74793291	74793755	0	1	464	0
chr10	74793314	74793718	brain_AmbionMAQC.8949	0	.	74793314	74793718	0	1	404	0
chr10	74797346	74799711	H1_polyA+.23734	0	.	74797346	74799711	0	1	2365	0
chr10	74797898	74800089	B_cells_Cheung.39544	0	.	74797898	74800089	0	1	2191	0
chr10	74798105	74799360	melanoma_Garraway_short_term_cultures.13903	0	.	74798105	74799360	0	1	1255	0
chr10	74798145	74799941	REMC_BreastStem.10829	0	.	74798145	74799941	0	1	1796	0
chr10	74798744	74799245	prostate_carcinoma.20332	0	.	74798744	74799245	0	1	501	0
chr10	74802520	74803156	B_cells_Cheung.39548	0	.	74802520	74803156	0	1	636	0
chr10	74849900	74851415	REMC_MyoepithelialBreast.19721	0	.	74849900	74851415	0	1	1515	0
chr10	74850115	74851387	CD4_Plagnol_resting.12982	0	.	74850115	74851387	0	1	1272	0
chr10	74850223	74851415	HepG2_Caltech_ENCODE.7305	0	.	74850223	74851415	0	1	1192	0
chr10	74850247	74851137	BT474_Burge_Thompson.6431	0	.	74850247	74851137	0	1	890	0
chr10	75058108	75060190	prostate_carcinoma.20397	0	-	75058108	75060190	0	2	955,186	0,1896
chr10	75058227	75059304	REMC_BreastStem.10841	0	.	75058227	75059304	0	1	1077	0
chr10	75058994	75059313	MIP101.14992	0	.	75058994	75059313	0	1	319	0
chr10	75101129	75102968	K562.9912	0	.	75101129	75102968	0	1	1839	0
chr10	75168918	75170504	REMC_LuminalBreast.21408	0	.	75168918	75170504	0	1	1586	0
chr10	75169386	75169803	B_cells_Cheung.48896	0	.	75169386	75169803	0	1	417	0
chr10	75208871	75209337	IMR90_UCSD_REMC.9996	0	-	75208871	75209337	0	1	466	0
chr10	75305984	75306393	A549_Myers.14568	0	.	75305984	75306393	0	1	409	0
chr10	75309053	75309547	B_cells_Cheung.39662	0	.	75309053	75309547	0	1	494	0
chr10	75316889	75317261	A549_Myers.14571	0	.	75316889	75317261	0	1	372	0
chr10	75370369	75370820	A549_Myers.14578	0	.	75370369	75370820	0	1	451	0
chr10	76142736	76143475	melanoma_Garraway_short_term_cultures.14009	0	.	76142736	76143475	0	1	739	0
chr10	76142932	76143442	MDAMB468_Thompson.5279	0	.	76142932	76143442	0	1	510	0
chr10	76142957	76143993	HepG2_Caltech_ENCODE.7345	0	.	76142957	76143993	0	1	1036	0
chr10	76143937	76145640	H1_polyA+.23996	0	.	76143937	76145640	0	1	1703	0
chr10	76145941	76157712	REMC_LuminalBreast.21739	0	.	76145941	76157712	0	1	11771	0
chr10	76146214	76158487	REMC_MyoepithelialBreast.21639	0	.	76146214	76158487	0	1	12273	0
chr10	76148795	76149930	B_Cells_Pritchard.667455	0	+	76148795	76149930	0	1	1135	0
chr10	76149203	76149926	B_cells_Cheung.39695	0	.	76149203	76149926	0	1	723	0
chr10	76149469	76149888	MIP101.13816	0	.	76149469	76149888	0	1	419	0
chr10	76159152	76159564	REMC_LuminalBreast.21448	0	.	76159152	76159564	0	1	412	0
chr10	76159757	76165486	REMC_LuminalBreast.21449	0	.	76159757	76165486	0	1	5729	0
chr10	76167553	76171933	REMC_LuminalBreast.21451	0	.	76167553	76171933	0	1	4380	0
chr10	76169473	76171982	REMC_MyoepithelialBreast.21642	0	.	76169473	76171982	0	1	2509	0
chr10	76176412	76179811	REMC_MyoepithelialBreast.21645	0	.	76176412	76179811	0	1	3399	0
chr10	76178849	76179281	B_Cells_Pritchard.667101	0	.	76178849	76179281	0	1	432	0
chr10	76181495	76185632	REMC_LuminalBreast.21454	0	.	76181495	76185632	0	1	4137	0
chr10	76181669	76183586	REMC_MyoepithelialBreast.21646	0	.	76181669	76183586	0	1	1917	0
chr10	76182874	76183573	ZR751_Thompson.5083	0	.	76182874	76183573	0	1	699	0
chr10	76182885	76183512	BT474_Burge_Thompson.6451	0	.	76182885	76183512	0	1	627	0
chr10	76183640	76184982	REMC_MyoepithelialBreast.19875	0	.	76183640	76184982	0	1	1342	0
chr10	76192186	76194980	REMC_LuminalBreast.21459	0	.	76192186	76194980	0	1	2794	0
chr10	76193500	76195136	REMC_MyoepithelialBreast.19879	0	.	76193500	76195136	0	1	1636	0
chr10	76193737	76194103	B_Cells_Pritchard.667183	0	.	76193737	76194103	0	1	366	0
chr10	76201253	76202040	REMC_LuminalBreast.21463	0	.	76201253	76202040	0	1	787	0
chr10	76202090	76203158	REMC_LuminalBreast.21464	0	.	76202090	76203158	0	1	1068	0
chr10	76203211	76209046	REMC_LuminalBreast.21465	0	.	76203211	76209046	0	1	5835	0
chr10	76207432	76208508	REMC_MyoepithelialBreast.19884	0	.	76207432	76208508	0	1	1076	0
chr10	76214447	76215561	REMC_LuminalBreast.21468	0	.	76214447	76215561	0	1	1114	0
chr10	76215371	76216162	REMC_MyoepithelialBreast.19886	0	.	76215371	76216162	0	1	791	0
chr10	76243849	76244194	B_Cells_Pritchard.667387	0	.	76243849	76244194	0	1	345	0
chr10	76616956	76617414	B_cells_Cheung.39837	0	.	76616956	76617414	0	1	458	0
chr10	76617708	76620704	REMC_LuminalBreast.21571	0	.	76617708	76620704	0	1	2996	0
chr10	76618428	76620000	B_cells_Cheung.39840	0	.	76618428	76620000	0	1	1572	0
chr10	76618514	76620182	REMC_MyoepithelialBreast.19907	0	.	76618514	76620182	0	1	1668	0
chr10	76618595	76619837	H1_polyA+.24023	0	.	76618595	76619837	0	1	1242	0
chr10	76618658	76620118	B_Cells_Pritchard.676667	0	+	76618658	76620118	0	1	1460	0
chr10	76621311	76622328	REMC_LuminalBreast.21573	0	.	76621311	76622328	0	1	1017	0
chr10	76621448	76623414	REMC_MyoepithelialBreast.19908	0	.	76621448	76623414	0	1	1966	0
chr10	76621812	76622190	B_Cells_Pritchard.676677	0	+	76621812	76622190	0	1	378	0
chr10	76621835	76622176	B_cells_Cheung.39877	0	.	76621835	76622176	0	1	341	0
chr10	76625951	76627270	B_Cells_Pritchard.676689	0	+	76625951	76627270	0	1	1319	0
chr10	76625960	76628537	REMC_LuminalBreast.21577	0	.	76625960	76628537	0	1	2577	0
chr10	76626830	76627336	B_cells_Cheung.39941	0	.	76626830	76627336	0	1	506	0
chr10	76628959	76635323	REMC_LuminalBreast.21578	0	.	76628959	76635323	0	1	6364	0
chr10	76628994	76629930	B_cells_Cheung.39945	0	.	76628994	76629930	0	1	936	0
chr10	76629041	76629921	REMC_MyoepithelialBreast.19913	0	.	76629041	76629921	0	1	880	0
chr10	76629222	76629994	REMC_BreastStem.11067	0	.	76629222	76629994	0	1	772	0
chr10	76630033	76633328	REMC_MyoepithelialBreast.19914	0	.	76630033	76633328	0	1	3295	0
chr10	76635437	76638515	REMC_LuminalBreast.21579	0	.	76635437	76638515	0	1	3078	0
chr10	76635545	76638508	B_cells_Cheung.39951	0	.	76635545	76638508	0	1	2963	0
chr10	76667818	76668615	B_cells_Cheung.39969	0	.	76667818	76668615	0	1	797	0
chr10	76668094	76668819	B_Cells_Pritchard.677459	0	-	76668094	76668819	0	1	725	0
chr10	76838163	76839373	MCF7_Burge_Thompson.6162	0	.	76838163	76839373	0	1	1210	0
chr10	76838730	76839486	B_cells_Cheung.39986	0	.	76838730	76839486	0	1	756	0
chr10	76838731	76839441	BT474_Burge_Thompson.6467	0	.	76838731	76839441	0	1	710	0
chr10	76838733	76839362	T47D_Burge_Thompson.5671	0	.	76838733	76839362	0	1	629	0
chr10	76838745	76839334	A549_Myers.14675	0	.	76838745	76839334	0	1	589	0
chr10	76838868	76839377	HeLa_polyA+_Chen.7252	0	.	76838868	76839377	0	1	509	0
chr10	76838920	76841088	HIT000426042	0	+	76838920	76841088	0	3	284,55,1033	0,973,1135
chr10	76838920	76841088	ENST00000515305	0	+	76838920	76841088	0	3	284,55,1033	0,973,1135
chr10	76839515	76841744	prostate_carcinoma.20504	0	+	76839515	76841744	0	2	433,1689	0,540
chr10	76839684	76840751	B_cells_Cheung.39987	0	+	76839684	76840751	0	2	264,696	0,371
chr10	76846539	76849578	prostate_carcinoma.20510	0	.	76846539	76849578	0	1	3039	0
chr10	76848190	76849465	HepG2_Caltech_ENCODE.7364	0	.	76848190	76849465	0	1	1275	0
chr10	76856821	76860709	HepG2_Caltech_ENCODE.7366	0	.	76856821	76860709	0	1	3888	0
chr10	76857465	76860412	B_cells_Cheung.39991	0	.	76857465	76860412	0	1	2947	0
chr10	76857750	76860268	prostate_normal.11924	0	.	76857750	76860268	0	1	2518	0
chr10	76859330	76860309	melanoma_Garraway_short_term_cultures.14046	0	.	76859330	76860309	0	1	979	0
chr10	78263771	78265082	REMC_MyoepithelialBreast.19948	0	.	78263771	78265082	0	1	1311	0
chr10	79070830	79071477	B_cells_Cheung.40447	0	.	79070830	79071477	0	1	647	0
chr10	79073949	79074423	B_Cells_Pritchard.676343	0	.	79073949	79074423	0	1	474	0
chr10	79079678	79080406	B_cells_Cheung.40455	0	.	79079678	79080406	0	1	728	0
chr10	79080354	79080990	B_Cells_Pritchard.676371	0	.	79080354	79080990	0	1	636	0
chr10	79080449	79081807	H1_polyA+.24088	0	.	79080449	79081807	0	1	1358	0
chr10	79080475	79081837	B_cells_Cheung.40457	0	.	79080475	79081837	0	1	1362	0
chr10	79080475	79129681	B_cells_Cheung.40456	0	-	79080475	79129681	0	2	964,147	0,49059
chr10	79081152	79081589	B_Cells_Pritchard.676373	0	.	79081152	79081589	0	1	437	0
chr10	79089545	79090707	B_cells_Cheung.40464	0	.	79089545	79090707	0	1	1162	0
chr10	79090915	79091889	H1_polyA+.24089	0	.	79090915	79091889	0	1	974	0
chr10	79090921	79091785	REMC_LuminalBreast.21748	0	.	79090921	79091785	0	1	864	0
chr10	79099558	79100049	B_Cells_Pritchard.676459	0	.	79099558	79100049	0	1	491	0
chr10	79102878	79104150	B_cells_Cheung.40475	0	.	79102878	79104150	0	1	1272	0
chr10	79104605	79107795	REMC_LuminalBreast.21753	0	.	79104605	79107795	0	1	3190	0
chr10	79104820	79108056	REMC_MyoepithelialBreast.19969	0	.	79104820	79108056	0	1	3236	0
chr10	79107503	79110324	B_cells_Cheung.40478	0	.	79107503	79110324	0	1	2821	0
chr10	79111602	79112393	B_Cells_Pritchard.676493	0	.	79111602	79112393	0	1	791	0
chr10	79111609	79112807	B_cells_Cheung.40482	0	.	79111609	79112807	0	1	1198	0
chr10	79114211	79114968	B_cells_Cheung.40484	0	.	79114211	79114968	0	1	757	0
chr10	79114214	79115312	REMC_MyoepithelialBreast.19971	0	.	79114214	79115312	0	1	1098	0
chr10	79116423	79116849	B_cells_Cheung.40486	0	.	79116423	79116849	0	1	426	0
chr10	79116511	79117198	B_Cells_Pritchard.676509	0	.	79116511	79117198	0	1	687	0
chr10	79121611	79122024	B_cells_Cheung.40493	0	.	79121611	79122024	0	1	413	0
chr10	79122627	79122946	B_Cells_Pritchard.676539	0	.	79122627	79122946	0	1	319	0
chr10	79131288	79134759	B_cells_Cheung.40505	0	.	79131288	79134759	0	1	3471	0
chr10	79131288	79141305	B_cells_Cheung.40504	0	-	79131288	79141305	0	3	1594,456,680	0,8700,9337
chr10	79131902	79141304	B_Cells_Pritchard.676695	0	-	79131902	79141304	0	2	980,1035	0,8367
chr10	79131902	79141304	B_Cells_Pritchard.676693	0	+	79131902	79141304	0	2	1093,1276	0,8126
chr10	79135031	79136641	H1_polyA+.24099	0	.	79135031	79136641	0	1	1610	0
chr10	79137621	79139771	REMC_LuminalBreast.21766	0	.	79137621	79139771	0	1	2150	0
chr10	79137956	79139930	B_cells_Cheung.40510	0	.	79137956	79139930	0	1	1974	0
chr10	79138479	79139494	REMC_MyoepithelialBreast.19979	0	.	79138479	79139494	0	1	1015	0
chr10	79139040	79139928	B_Cells_Pritchard.676713	0	+	79139040	79139928	0	1	888	0
chr10	79140037	79141305	H1_polyA+.24101	0	-	79140037	79141305	0	2	352,680	0,588
chr10	79141072	79141576	A549_Myers.14733	0	.	79141072	79141576	0	1	504	0
chr10	79146234	79147818	REMC_LuminalBreast.21770	0	.	79146234	79147818	0	1	1584	0
chr10	79152995	79154771	REMC_LuminalBreast.21772	0	.	79152995	79154771	0	1	1776	0
chr10	79153512	79154289	REMC_MyoepithelialBreast.19985	0	.	79153512	79154289	0	1	777	0
chr10	79165437	79166091	REMC_MyoepithelialBreast.19992	0	.	79165437	79166091	0	1	654	0
chr10	79166401	79172376	REMC_LuminalBreast.21777	0	.	79166401	79172376	0	1	5975	0
chr10	79168543	79172277	REMC_MyoepithelialBreast.19995	0	.	79168543	79172277	0	1	3734	0
chr10	79175091	79190797	REMC_LuminalBreast.21779	0	.	79175091	79190797	0	1	15706	0
chr10	79189794	79201129	prostate_carcinoma.20670	0	+	79189794	79201129	0	2	64,1275	0,10060
chr10	79191040	79203010	REMC_LuminalBreast.21780	0	.	79191040	79203010	0	1	11970	0
chr10	79193153	79194156	prostate_carcinoma.20669	0	.	79193153	79194156	0	1	1003	0
chr10	79195693	79201037	REMC_MyoepithelialBreast.20007	0	.	79195693	79201037	0	1	5344	0
chr10	79208193	79209265	B_Cells_Pritchard.677117	0	.	79208193	79209265	0	1	1072	0
chr10	79208313	79209135	prostate_normal.11976	0	.	79208313	79209135	0	1	822	0
chr10	79208433	79209494	MDAMB468_Thompson.5307	0	.	79208433	79209494	0	1	1061	0
chr10	79209433	79209947	B_Cells_Pritchard.677115	0	.	79209433	79209947	0	1	514	0
chr10	79212005	79213206	HepG2_Caltech_ENCODE.7416	0	.	79212005	79213206	0	1	1201	0
chr10	79212064	79213032	prostate_normal.11974	0	.	79212064	79213032	0	1	968	0
chr10	79212772	79213200	HeLa_polyA+_Chen.7266	0	.	79212772	79213200	0	1	428	0
chr10	79356575	79359589	NR_024585	0	+	79356575	79359589	0	1	3014	0
chr10	79357394	79359588	HIT000019184	0	+	79357394	79359588	0	1	2194	0
chr10	79358219	79358527	A549_Myers.14747	0	.	79358219	79358527	0	1	308	0
chr10	79359357	79359664	B_cells_Cheung.40556	0	.	79359357	79359664	0	1	307	0
chr10	79361227	79362223	prostate_carcinoma.20720	0	.	79361227	79362223	0	1	996	0
chr10	79398507	79399005	brain_AmbionMAQC.9032	0	.	79398507	79399005	0	1	498	0
chr10	79489079	79490078	H1_polyA+.24186	0	.	79489079	79490078	0	1	999	0
chr10	79489265	79490572	REMC_BreastStem.11179	0	.	79489265	79490572	0	1	1307	0
chr10	79489275	79490131	B_cells_Cheung.40867	0	.	79489275	79490131	0	1	856	0
chr10	79489315	79490359	prostate_carcinoma.20899	0	.	79489315	79490359	0	1	1044	0
chr10	79489321	79490287	MIP101.13940	0	.	79489321	79490287	0	1	966	0
chr10	79489465	79490394	HepG2_Caltech_ENCODE.7429	0	.	79489465	79490394	0	1	929	0
chr10	79489533	79490419	CD4_Plagnol_resting.13147	0	.	79489533	79490419	0	1	886	0
chr10	79492250	79493619	B_cells_Cheung.40869	0	.	79492250	79493619	0	1	1369	0
chr10	79493044	79494301	REMC_BreastStem.11181	0	.	79493044	79494301	0	1	1257	0
chr10	79524222	79524733	MIP101.13943	0	.	79524222	79524733	0	1	511	0
chr10	79524231	79524782	REMC_MyoepithelialBreast.20071	0	.	79524231	79524782	0	1	551	0
chr10	79524234	79524798	REMC_LuminalBreast.21803	0	.	79524234	79524798	0	1	564	0
chr10	79524239	79524759	H1_polyA+.24188	0	.	79524239	79524759	0	1	520	0
chr10	79524268	79524719	B_cells_Cheung.40873	0	.	79524268	79524719	0	1	451	0
chr10	79524336	79524741	B_Cells_Pritchard.677939	0	.	79524336	79524741	0	1	405	0
chr10	79524889	79529423	REMC_LuminalBreast.21804	0	.	79524889	79529423	0	1	4534	0
chr10	79525060	79527010	REMC_MyoepithelialBreast.20072	0	.	79525060	79527010	0	1	1950	0
chr10	79527879	79529427	REMC_MyoepithelialBreast.20075	0	.	79527879	79529427	0	1	1548	0
chr10	79529489	79530779	REMC_MyoepithelialBreast.20076	0	.	79529489	79530779	0	1	1290	0
chr10	79529493	79530788	REMC_LuminalBreast.21805	0	.	79529493	79530788	0	1	1295	0
chr10	79531192	79531688	REMC_MyoepithelialBreast.20077	0	.	79531192	79531688	0	1	496	0
chr10	79532523	79534095	REMC_MyoepithelialBreast.20080	0	.	79532523	79534095	0	1	1572	0
chr10	79533234	79535222	REMC_LuminalBreast.21808	0	.	79533234	79535222	0	1	1988	0
chr10	79534208	79535225	REMC_MyoepithelialBreast.20081	0	.	79534208	79535225	0	1	1017	0
chr10	79535387	79535757	REMC_MyoepithelialBreast.20082	0	.	79535387	79535757	0	1	370	0
chr10	79538277	79539470	REMC_LuminalBreast.21810	0	.	79538277	79539470	0	1	1193	0
chr10	79573335	79574213	REMC_MyoepithelialBreast.20096	0	.	79573335	79574213	0	1	878	0
chr10	79602955	79605113	HIT000022528	0	-	79602955	79605113	0	1	2158	0
chr10	79633419	79691401	pHIT000082794	0	-	79633419	79691401	0	4	107,174,251,170	0,12246,56609,57812
chr10	79638492	79639677	REMC_MyoepithelialBreast.20097	0	.	79638492	79639677	0	1	1185	0
chr10	79638877	79640154	REMC_LuminalBreast.21817	0	.	79638877	79640154	0	1	1277	0
chr10	79640619	79645732	B_Cells_Pritchard.678363	0	+	79640619	79645732	0	2	142,2156	0,2957
chr10	79643236	79644618	REMC_LuminalBreast.21818	0	.	79643236	79644618	0	1	1382	0
chr10	79643461	79645105	REMC_MyoepithelialBreast.20098	0	.	79643461	79645105	0	1	1644	0
chr10	79643574	79644930	B_cells_Cheung.40882	0	.	79643574	79644930	0	1	1356	0
chr10	79645297	79646298	REMC_LuminalBreast.21819	0	.	79645297	79646298	0	1	1001	0
chr10	79645325	79645748	B_cells_Cheung.40883	0	.	79645325	79645748	0	1	423	0
chr10	79646702	79647845	B_cells_Cheung.40885	0	.	79646702	79647845	0	1	1143	0
chr10	79646851	79648233	B_Cells_Pritchard.678367	0	.	79646851	79648233	0	1	1382	0
chr10	79647936	79648891	B_cells_Cheung.40886	0	.	79647936	79648891	0	1	955	0
chr10	79648405	79649145	B_Cells_Pritchard.678365	0	.	79648405	79649145	0	1	740	0
chr10	79655347	79660481	khalil_288	0	.	79655347	79660481	0	5	116,43,93,221,373	0,482,2916,3179,4761
chr10	79659285	79660010	REMC_MyoepithelialBreast.20099	0	.	79659285	79660010	0	1	725	0
chr10	79659621	79660459	REMC_LuminalBreast.21820	0	.	79659621	79660459	0	1	838	0
chr10	79662679	79663676	REMC_MyoepithelialBreast.20101	0	.	79662679	79663676	0	1	997	0
chr10	79662690	79663101	B_cells_Cheung.40887	0	.	79662690	79663101	0	1	411	0
chr10	79667175	79668044	REMC_MyoepithelialBreast.20102	0	.	79667175	79668044	0	1	869	0
chr10	79678510	79682408	ENST00000434974	0	+	79678510	79682408	0	2	323,2369	0,1529
chr10	79678510	79682405	HIT000015898	0	+	79678510	79682405	0	2	323,2366	0,1529
chr10	79680030	79680595	B_cells_Cheung.40892	0	.	79680030	79680595	0	1	565	0
chr10	79687848	79689878	HIT000027449	0	+	79687848	79689878	0	1	2030	0
chr10	79698812	79700998	prostate_carcinoma.20759	0	.	79698812	79700998	0	1	2186	0
chr10	79702606	79709967	prostate_carcinoma.20758	0	-	79702606	79709967	0	2	3487,1433	0,5928
chr10	79702647	79705634	prostate_normal.12006	0	.	79702647	79705634	0	1	2987	0
chr10	79706473	79709967	prostate_carcinoma.20757	0	.	79706473	79709967	0	1	3494	0
chr10	79706919	79707311	prostate_normal.12009	0	.	79706919	79707311	0	1	392	0
chr10	79709171	79709943	B_cells_Cheung.40894	0	.	79709171	79709943	0	1	772	0
chr10	79732758	79733621	A549_Myers.14769	0	.	79732758	79733621	0	1	863	0
chr10	79757332	79757837	B_Cells_Pritchard.678715	0	.	79757332	79757837	0	1	505	0
chr10	79757339	79758888	prostate_carcinoma.20762	0	.	79757339	79758888	0	1	1549	0
chr10	79757369	79757822	A549_Myers.14770	0	.	79757369	79757822	0	1	453	0
chr10	79757945	79758929	B_Cells_Pritchard.678719	0	.	79757945	79758929	0	1	984	0
chr10	79761432	79763992	prostate_carcinoma.20763	0	.	79761432	79763992	0	1	2560	0
chr10	79761963	79763108	prostate_normal.12010	0	.	79761963	79763108	0	1	1145	0
chr10	79836306	79980620	ENST00000510550	0	+	79836306	79980620	0	4	156,155,64,220	0,118786,122207,144094
chr10	79837164	79837607	A549_Myers.14781	0	.	79837164	79837607	0	1	443	0
chr10	79837948	79838399	A549_Myers.14780	0	.	79837948	79838399	0	1	451	0
chr10	79862087	79864242	HepG2_Caltech_ENCODE.7431	0	.	79862087	79864242	0	1	2155	0
chr10	79862895	79863527	B_Cells_Pritchard.678949	0	.	79862895	79863527	0	1	632	0
chr10	79863138	79864085	prostate_carcinoma.20765	0	.	79863138	79864085	0	1	947	0
chr10	79863640	79864318	B_Cells_Pritchard.678951	0	.	79863640	79864318	0	1	678	0
chr10	79868977	79869443	A549_Myers.14783	0	.	79868977	79869443	0	1	466	0
chr10	79872813	79873267	A549_Myers.14784	0	.	79872813	79873267	0	1	454	0
chr10	79873878	79883524	khalil_291	0	.	79873878	79883524	0	5	87,263,47,183,255	0,3195,4117,7043,9391
chr10	79877599	79878578	prostate_carcinoma.20768	0	.	79877599	79878578	0	1	979	0
chr10	79881731	79882740	HepG2_Caltech_ENCODE.7438	0	.	79881731	79882740	0	1	1009	0
chr10	79886292	79888167	HepG2_Caltech_ENCODE.7443	0	.	79886292	79888167	0	1	1875	0
chr10	79896901	79897442	prostate_carcinoma.20774	0	.	79896901	79897442	0	1	541	0
chr10	79965183	79977887	HepG2_Caltech_ENCODE.7446	0	.	79965183	79977887	0	1	12704	0
chr10	79965183	79977887	HepG2_Caltech_ENCODE.7447	0	+	79965183	79977887	0	2	2635,9029	0,3675
chr10	80117924	80118451	A549_Myers.14785	0	.	80117924	80118451	0	1	527	0
chr10	80199071	80204355	HIT000012068	0	+	80199071	80204355	0	2	364,2178	0,3106
chr10	80256414	80256853	brain_AmbionMAQC.9060	0	.	80256414	80256853	0	1	439	0
chr10	80256939	80257333	brain_AmbionMAQC.9061	0	.	80256939	80257333	0	1	394	0
chr10	80294480	80294822	brain_AmbionMAQC.9064	0	.	80294480	80294822	0	1	342	0
chr10	80294991	80295447	brain_AmbionMAQC.9065	0	.	80294991	80295447	0	1	456	0
chr10	80334827	80335150	brain_AmbionMAQC.9067	0	.	80334827	80335150	0	1	323	0
chr10	80349621	80350146	A549_Myers.14792	0	.	80349621	80350146	0	1	525	0
chr10	80352826	80353872	pHIT000109173	0	+	80352826	80353872	0	3	85,99,164	0,585,882
chr10	80354883	80356608	BT474_Burge_Thompson.6489	0	.	80354883	80356608	0	1	1725	0
chr10	80360741	80362690	BT474_Burge_Thompson.6490	0	.	80360741	80362690	0	1	1949	0
chr10	80373087	80407883	Rinn_00018966	0	-	80373087	80407883	0	5	1423,79,166,152,263	0,2586,17917,18573,34533
chr10	80373087	80407883	Rinn_00018967	0	-	80373087	80407883	0	5	1423,79,155,152,263	0,2586,17928,18573,34533
chr10	80373087	80390443	Rinn_00018965	0	-	80373087	80390443	0	3	1423,79,177	0,2586,17179
chr10	80373088	80497211	NR_024429	0	-	80373088	80497211	0	8	1422,78,154,151,159,73,139,61	0,2586,17928,18573,105448,122421,123122,124062
chr10	80373088	80497211	NR_024431	0	-	80373088	80497211	0	10	1422,78,154,151,63,159,133,73,139,61	0,2586,17928,18573,19498,105448,111270,122421,123122,124062
chr10	80373089	80392157	Rinn_00018000	0	-	80373089	80392157	0	4	1421,79,213,1142	0,2584,17177,17926
chr10	80373090	80392157	HIT000022777	0	-	80373090	80392157	0	4	1420,78,212,1141	0,2584,17177,17926
chr10	80373090	80497658	ENST00000456353	0	-	80373090	80497658	0	10	1420,78,154,151,63,159,133,73,139,508	0,2584,17926,18571,19496,105446,111268,122419,123120,124060
chr10	80373090	80497658	HIT000023079	0	-	80373090	80497658	0	10	1420,78,154,151,63,159,133,73,139,512	0,2584,17926,18571,19496,105446,111268,122419,123120,124056
chr10	80373090	80392157	ENST00000428862	0	-	80373090	80392157	0	4	1420,78,212,1141	0,2584,17177,17926
chr10	80373967	80496253	HIT000386450	0	-	80373967	80496253	0	7	543,78,154,151,159,73,43	0,1707,17049,17694,104569,121542,122243
chr10	80378954	80382294	prostate_carcinoma.20784	0	.	80378954	80382294	0	1	3340	0
chr10	80380738	80381161	A549_Myers.14795	0	.	80380738	80381161	0	1	423	0
chr10	80380757	80381392	prostate_normal.12017	0	.	80380757	80381392	0	1	635	0
chr10	80381535	80382660	prostate_normal.12018	0	.	80381535	80382660	0	1	1125	0
chr10	80382294	80383115	prostate_carcinoma.20785	0	.	80382294	80383115	0	1	821	0
chr10	80382903	80383601	prostate_normal.12019	0	.	80382903	80383601	0	1	698	0
chr10	80384936	80385373	prostate_carcinoma.20787	0	.	80384936	80385373	0	1	437	0
chr10	80390331	80407695	melanoma_Garraway_short_term_cultures.14129	0	-	80390331	80407695	0	5	148,154,151,63,74	0,685,1330,2255,17290
chr10	80394137	80395374	prostate_carcinoma.20791	0	.	80394137	80395374	0	1	1237	0
chr10	80394418	80394900	A549_Myers.14797	0	.	80394418	80394900	0	1	482	0
chr10	80394524	80408048	khalil_294	0	.	80394524	80408048	0	11	653,33,140,104,65,1214,598,160,1172,137,531	0,1572,2142,2868,5148,8212,9597,10308,11500,12741,12993
chr10	80402192	80403601	REMC_MyoepithelialBreast.20106	0	.	80402192	80403601	0	1	1409	0
chr10	80402532	80403317	REMC_LuminalBreast.21822	0	.	80402532	80403317	0	1	785	0
chr10	80402978	80403398	A549_Myers.14803	0	.	80402978	80403398	0	1	420	0
chr10	80403656	80405988	REMC_MyoepithelialBreast.20107	0	.	80403656	80405988	0	1	2332	0
chr10	80411619	80411929	A549_Myers.14807	0	.	80411619	80411929	0	1	310	0
chr10	80426309	80427340	prostate_carcinoma.20799	0	.	80426309	80427340	0	1	1031	0
chr10	80429374	80430429	prostate_carcinoma.20802	0	.	80429374	80430429	0	1	1055	0
chr10	80430246	80433566	ENST00000427035	0	-	80430246	80433566	0	2	1753,265	0,3055
chr10	80430246	80433566	HIT000018061	0	-	80430246	80433566	0	2	1753,265	0,3055
chr10	80434549	80435091	A549_Myers.14810	0	.	80434549	80435091	0	1	542	0
chr10	80435310	80436182	prostate_carcinoma.20805	0	.	80435310	80436182	0	1	872	0
chr10	80436315	80437920	prostate_carcinoma.20806	0	.	80436315	80437920	0	1	1605	0
chr10	80437994	80438969	prostate_carcinoma.20807	0	.	80437994	80438969	0	1	975	0
chr10	80442465	80445108	prostate_carcinoma.20811	0	.	80442465	80445108	0	1	2643	0
chr10	80445915	80446872	prostate_carcinoma.20812	0	.	80445915	80446872	0	1	957	0
chr10	80447219	80498542	HIT000046175	0	-	80447219	80498542	0	5	3183,73,139,54,380	0,48290,48991,49927,50943
chr10	80447328	80457795	prostate_carcinoma.20815	0	-	80447328	80457795	0	2	888,2066	0,8401
chr10	80449572	80450715	prostate_carcinoma.20816	0	.	80449572	80450715	0	1	1143	0
chr10	80452347	80455038	prostate_carcinoma.20818	0	.	80452347	80455038	0	1	2691	0
chr10	80452445	80453816	prostate_normal.12024	0	.	80452445	80453816	0	1	1371	0
chr10	80452691	80453291	HepG2_Caltech_ENCODE.7451	0	.	80452691	80453291	0	1	600	0
chr10	80452898	80453928	melanoma_Garraway_short_term_cultures.14130	0	.	80452898	80453928	0	1	1030	0
chr10	80454417	80456659	prostate_normal.12022	0	.	80454417	80456659	0	1	2242	0
chr10	80454943	80455442	B_Cells_Pritchard.680387	0	.	80454943	80455442	0	1	499	0
chr10	80455190	80457597	prostate_carcinoma.20814	0	.	80455190	80457597	0	1	2407	0
chr10	80455383	80456014	BT474_Burge_Thompson.6491	0	.	80455383	80456014	0	1	631	0
chr10	80456841	80457579	prostate_normal.12025	0	.	80456841	80457579	0	1	738	0
chr10	80457859	80458878	prostate_carcinoma.20819	0	.	80457859	80458878	0	1	1019	0
chr10	80458542	80460056	B_cells_Cheung.40900	0	.	80458542	80460056	0	1	1514	0
chr10	80459183	80460021	prostate_carcinoma.20820	0	.	80459183	80460021	0	1	838	0
chr10	80463646	80465624	prostate_carcinoma.20822	0	.	80463646	80465624	0	1	1978	0
chr10	80463892	80464789	prostate_normal.12027	0	.	80463892	80464789	0	1	897	0
chr10	80470536	80471781	REMC_LuminalBreast.21826	0	.	80470536	80471781	0	1	1245	0
chr10	80473156	80479432	prostate_carcinoma.20823	0	.	80473156	80479432	0	1	6276	0
chr10	80473910	80497231	ENST00000440151	0	-	80473910	80497231	0	5	365,159,136,73,81	0,4626,6134,21599,23240
chr10	80474417	80475905	prostate_normal.12029	0	.	80474417	80475905	0	1	1488	0
chr10	80475878	80477006	REMC_LuminalBreast.21828	0	.	80475878	80477006	0	1	1128	0
chr10	80476024	80477680	prostate_normal.12030	0	.	80476024	80477680	0	1	1656	0
chr10	80476083	80476632	B_Cells_Pritchard.680447	0	.	80476083	80476632	0	1	549	0
chr10	80477826	80479251	prostate_normal.12031	0	.	80477826	80479251	0	1	1425	0
chr10	80477826	80480323	prostate_normal.12033	0	-	80477826	80480323	0	2	869,279	0,2218
chr10	80478394	80478782	B_Cells_Pritchard.680457	0	.	80478394	80478782	0	1	388	0
chr10	80479704	80485021	prostate_carcinoma.20824	0	.	80479704	80485021	0	1	5317	0
chr10	80482305	80484211	prostate_normal.12034	0	.	80482305	80484211	0	1	1906	0
chr10	80485595	80489599	prostate_normal.12035	0	.	80485595	80489599	0	1	4004	0
chr10	80485614	80491985	prostate_carcinoma.20826	0	.	80485614	80491985	0	1	6371	0
chr10	80485846	80486572	B_Cells_Pritchard.680487	0	.	80485846	80486572	0	1	726	0
chr10	80486854	80488053	REMC_LuminalBreast.21829	0	.	80486854	80488053	0	1	1199	0
chr10	80486926	80487496	A549_Myers.14817	0	.	80486926	80487496	0	1	570	0
chr10	80487051	80487842	melanoma_Garraway_short_term_cultures.14132	0	.	80487051	80487842	0	1	791	0
chr10	80492273	80494337	prostate_carcinoma.20827	0	.	80492273	80494337	0	1	2064	0
chr10	80492276	80493400	prostate_normal.12032	0	.	80492276	80493400	0	1	1124	0
chr10	80492389	80493074	melanoma_Garraway_short_term_cultures.14135	0	.	80492389	80493074	0	1	685	0
chr10	80492721	80493422	B_Cells_Pritchard.680515	0	.	80492721	80493422	0	1	701	0
chr10	80493252	80494586	REMC_LuminalBreast.21831	0	.	80493252	80494586	0	1	1334	0
chr10	80493500	80494276	prostate_normal.12037	0	.	80493500	80494276	0	1	776	0
chr10	80497021	80497463	A549_Myers.14820	0	.	80497021	80497463	0	1	442	0
chr10	80497114	80497607	B_cells_Cheung.40905	0	.	80497114	80497607	0	1	493	0
chr10	80747359	80747831	B_Cells_Pritchard.681279	0	.	80747359	80747831	0	1	472	0
chr10	80760809	80761736	REMC_LuminalBreast.21879	0	.	80760809	80761736	0	1	927	0
chr10	80774300	80775329	HepG2_Caltech_ENCODE.7485	0	.	80774300	80775329	0	1	1029	0
chr10	80774441	80775834	H1_polyA+.24238	0	.	80774441	80775834	0	1	1393	0
chr10	80774824	80775291	K562.10031	0	.	80774824	80775291	0	1	467	0
chr10	80774855	80775587	MIP101.14022	0	.	80774855	80775587	0	1	732	0
chr10	80774997	80775706	prostate_carcinoma.20901	0	.	80774997	80775706	0	1	709	0
chr10	80786588	80787740	melanoma_Garraway_short_term_cultures.14161	0	.	80786588	80787740	0	1	1152	0
chr10	80786745	80788371	REMC_BreastStem.11220	0	.	80786745	80788371	0	1	1626	0
chr10	80786993	80789483	CD4_Plagnol_activated.13620	0	.	80786993	80789483	0	1	2490	0
chr10	80787271	80788374	CD4_Plagnol_resting.13159	0	.	80787271	80788374	0	1	1103	0
chr10	80793254	80800425	REMC_LuminalBreast.21883	0	.	80793254	80800425	0	1	7171	0
chr10	80799958	80800768	REMC_BreastStem.11225	0	.	80799958	80800768	0	1	810	0
chr10	80799970	80800398	B_cells_Cheung.40974	0	.	80799970	80800398	0	1	428	0
chr10	80801162	80803130	REMC_LuminalBreast.21884	0	.	80801162	80803130	0	1	1968	0
chr10	80803291	80805543	REMC_LuminalBreast.21885	0	.	80803291	80805543	0	1	2252	0
chr10	80804383	80804806	B_cells_Cheung.40975	0	.	80804383	80804806	0	1	423	0
chr10	80805909	80807268	REMC_LuminalBreast.21886	0	.	80805909	80807268	0	1	1359	0
chr10	80806742	80807249	B_cells_Cheung.40976	0	.	80806742	80807249	0	1	507	0
chr10	80806769	80807304	Rinn_00018545	0	-	80806769	80807304	0	2	385,9	0,526
chr10	80806921	80808456	REMC_MyoepithelialBreast.20894	0	.	80806921	80808456	0	1	1535	0
chr10	80806966	80807613	A549_Myers.14912	0	.	80806966	80807613	0	1	647	0
chr10	80807177	80807864	prostate_carcinoma.20902	0	.	80807177	80807864	0	1	687	0
chr10	80807336	80808825	B_cells_Cheung.40977	0	.	80807336	80808825	0	1	1489	0
chr10	80807374	80810513	REMC_LuminalBreast.21887	0	.	80807374	80810513	0	1	3139	0
chr10	80807541	80808925	HepG2_Caltech_ENCODE.7489	0	.	80807541	80808925	0	1	1384	0
chr10	80807677	80808190	A549_Myers.14913	0	.	80807677	80808190	0	1	513	0
chr10	80807944	80808829	prostate_carcinoma.20903	0	.	80807944	80808829	0	1	885	0
chr10	80808132	80808759	melanoma_Garraway_short_term_cultures.14164	0	.	80808132	80808759	0	1	627	0
chr10	80808169	80808731	prostate_normal.12066	0	.	80808169	80808731	0	1	562	0
chr10	80808565	80810026	REMC_MyoepithelialBreast.20895	0	.	80808565	80810026	0	1	1461	0
chr10	80810314	80811069	A549_Myers.14917	0	.	80810314	80811069	0	1	755	0
chr10	80930997	80932273	HIT000024991	0	-	80930997	80932273	0	1	1276	0
chr10	81683384	81684587	H1_polyA+.24276	0	.	81683384	81684587	0	1	1203	0
chr10	81683451	81685554	prostate_carcinoma.20932	0	.	81683451	81685554	0	1	2103	0
chr10	81796115	81806139	MCF7_Burge_Thompson.6202	0	-	81796115	81806139	0	3	2799,191,488	0,7016,9536
chr10	81797542	81806512	B_cells_Cheung.41037	0	-	81797542	81806512	0	3	1372,191,861	0,5589,8109
chr10	81803933	81804407	prostate_carcinoma.20960	0	.	81803933	81804407	0	1	474	0
chr10	81805519	81808444	prostate_carcinoma.20957	0	.	81805519	81808444	0	1	2925	0
chr10	81805542	81806635	B_Cells_Pritchard.682465	0	.	81805542	81806635	0	1	1093	0
chr10	81809439	81809826	B_cells_Cheung.41036	0	.	81809439	81809826	0	1	387	0
chr10	81809461	81809828	H1_polyA+.24287	0	.	81809461	81809828	0	1	367	0
chr10	81812139	81813317	REMC_LuminalBreast.21968	0	.	81812139	81813317	0	1	1178	0
chr10	81812709	81813272	H1_polyA+.24290	0	.	81812709	81813272	0	1	563	0
chr10	81852777	81853255	REMC_LuminalBreast.21978	0	.	81852777	81853255	0	1	478	0
chr10	81852938	81854432	REMC_MyoepithelialBreast.20161	0	.	81852938	81854432	0	1	1494	0
chr10	81853320	81860451	REMC_LuminalBreast.21979	0	.	81853320	81860451	0	1	7131	0
chr10	81861481	81862633	REMC_LuminalBreast.22179	0	.	81861481	81862633	0	1	1152	0
chr10	81897412	81898559	melanoma_Garraway_short_term_cultures.14189	0	.	81897412	81898559	0	1	1147	0
chr10	81956776	81958240	MIP101.14047	0	.	81956776	81958240	0	1	1464	0
chr10	81956872	81957981	A549_Myers.14966	0	.	81956872	81957981	0	1	1109	0
chr10	81956933	81957954	T47D_Burge_Thompson.5714	0	.	81956933	81957954	0	1	1021	0
chr10	81956996	81957987	BT20_Thompson.4555	0	.	81956996	81957987	0	1	991	0
chr10	81957048	81958010	HeLa_polyA+_Chen.7291	0	.	81957048	81958010	0	1	962	0
chr10	81957085	81958069	H1_polyA+.24315	0	.	81957085	81958069	0	1	984	0
chr10	81957122	81958792	REMC_LuminalBreast.22077	0	.	81957122	81958792	0	1	1670	0
chr10	81957154	81957979	MDAMB231_Thompson.4665	0	.	81957154	81957979	0	1	825	0
chr10	81957171	81957967	MCF10A_Thompson.4635	0	.	81957171	81957967	0	1	796	0
chr10	81957193	81957962	REMC_MyoepithelialBreast.20172	0	.	81957193	81957962	0	1	769	0
chr10	81957203	81957962	REMC_BreastStem.11237	0	.	81957203	81957962	0	1	759	0
chr10	81957242	81957961	prostate_normal.12125	0	.	81957242	81957961	0	1	719	0
chr10	82013097	82013994	liver_polyA+.28644	0	.	82013097	82013994	0	1	897	0
chr10	82149965	82150506	A549_Myers.14972	0	.	82149965	82150506	0	1	541	0
chr10	82444811	82445186	A549_Myers.14993	0	.	82444811	82445186	0	1	375	0
chr10	82446324	82451996	pHIT000017817	0	-	82446324	82451996	0	3	182,56,104	0,239,5568
chr10	82449273	82449724	A549_Myers.14994	0	.	82449273	82449724	0	1	451	0
chr10	82644368	82648135	H1_polyA+.24344	0	.	82644368	82648135	0	1	3767	0
chr10	83222959	83223891	B_cells_Cheung.41138	0	.	83222959	83223891	0	1	932	0
chr10	83251195	83253049	HIT000022698	0	+	83251195	83253049	0	1	1854	0
chr10	84751667	84752467	brain_AmbionMAQC.9120	0	.	84751667	84752467	0	1	800	0
chr10	84827146	84827859	prostate_carcinoma.21008	0	.	84827146	84827859	0	1	713	0
chr10	84913172	84913710	prostate_carcinoma.21012	0	.	84913172	84913710	0	1	538	0
chr10	85049610	85050099	prostate_carcinoma.21029	0	.	85049610	85050099	0	1	489	0
chr10	85127588	85143677	prostate_carcinoma.21037	0	+	85127588	85143677	0	2	25,745	0,15344
chr10	85179608	85180400	prostate_carcinoma.21041	0	.	85179608	85180400	0	1	792	0
chr10	85206947	85209263	prostate_carcinoma.21047	0	.	85206947	85209263	0	1	2316	0
chr10	85872952	85873681	B_Cells_Pritchard.691349	0	.	85872952	85873681	0	1	729	0
chr10	85873158	85873672	B_cells_Cheung.41184	0	.	85873158	85873672	0	1	514	0
chr10	85904302	85909877	B_cells_Cheung.41201	0	.	85904302	85909877	0	1	5575	0
chr10	85904315	85904642	ZR751_Thompson.5157	0	.	85904315	85904642	0	1	327	0
chr10	85904913	85905642	CD4_Plagnol_resting.13235	0	.	85904913	85905642	0	1	729	0
chr10	85904918	85909708	REMC_BreastStem.11282	0	.	85904918	85909708	0	1	4790	0
chr10	85904921	85906060	CD4_Plagnol_activated.13682	0	.	85904921	85906060	0	1	1139	0
chr10	85912269	85916300	B_cells_Cheung.41204	0	.	85912269	85916300	0	1	4031	0
chr10	85912269	85921881	B_cells_Cheung.41203	0	-	85912269	85921881	0	2	3400,424	0,9188
chr10	85912272	85921866	B_Cells_Pritchard.691461	0	+	85912272	85921866	0	3	3944,1990,1620	0,4956,7974
chr10	85916361	85917170	B_cells_Cheung.41206	0	.	85916361	85917170	0	1	809	0
chr10	85916377	85917160	B_Cells_Pritchard.691467	0	-	85916377	85917160	0	1	783	0
chr10	85920086	85921881	B_cells_Cheung.41205	0	.	85920086	85921881	0	1	1795	0
chr10	85936333	85936847	B_cells_Cheung.41211	0	.	85936333	85936847	0	1	514	0
chr10	85936385	85936942	BT474_Burge_Thompson.6567	0	.	85936385	85936942	0	1	557	0
chr10	86029714	86044395	Rinn_00017711	0	+	86029714	86044395	0	6	87,198,188,71,732,1415	0,8244,8614,8995,11427,13266
chr10	86029715	86044395	HIT000013175	0	+	86029715	86044395	0	6	86,197,187,70,731,1414	0,8244,8614,8995,11427,13266
chr10	86029715	86044395	ENST00000415469	0	+	86029715	86044395	0	6	86,197,187,70,731,1414	0,8244,8614,8995,11427,13266
chr10	86029725	86038731	Rinn_00017848	0	+	86029725	86038731	0	3	76,198,403	0,8233,8603
chr10	86040518	86043845	T47D_Burge_Thompson.5756	0	+	86040518	86043845	0	3	1355,176,864	0,1420,2463
chr10	86042871	86044425	H1_polyA+.24545	0	.	86042871	86044425	0	1	1554	0
chr10	86042886	86044998	MIP101.14089	0	.	86042886	86044998	0	1	2112	0
chr10	86043056	86043443	HIT000337983	0	+	86043056	86043443	0	1	387	0
chr10	86043057	86043447	HIT000338009	0	+	86043057	86043447	0	1	390	0
chr10	86051698	86052719	H1_polyA+.24548	0	.	86051698	86052719	0	1	1021	0
chr10	86567799	86568134	A549_Myers.15032	0	.	86567799	86568134	0	1	335	0
chr10	87276616	87280852	HIT000046947	0	-	87276616	87280852	0	1	4236	0
chr10	88123595	88129038	B_Cells_Pritchard.696819	0	-	88123595	88129038	0	2	5155,38	0,5405
chr10	88126931	88127280	A549_Myers.15047	0	.	88126931	88127280	0	1	349	0
chr10	88138755	88143127	B_cells_Cheung.41653	0	.	88138755	88143127	0	1	4372	0
chr10	88144699	88145540	B_cells_Cheung.41344	0	.	88144699	88145540	0	1	841	0
chr10	88146773	88148879	B_cells_Cheung.41346	0	-	88146773	88148879	0	2	422,47	0,2059
chr10	88149343	88153412	B_cells_Cheung.41348	0	.	88149343	88153412	0	1	4069	0
chr10	88149583	88151254	A549_Myers.15049	0	.	88149583	88151254	0	1	1671	0
chr10	88149772	88151673	HepG2_Caltech_ENCODE.7562	0	.	88149772	88151673	0	1	1901	0
chr10	88150225	88151520	B_Cells_Pritchard.696885	0	-	88150225	88151520	0	1	1295	0
chr10	88151733	88153496	HepG2_Caltech_ENCODE.7563	0	.	88151733	88153496	0	1	1763	0
chr10	88151738	88152923	Rinn_00018561	0	-	88151738	88152923	0	2	663,98	0,1087
chr10	88151761	88152950	Rinn_00018986	0	-	88151761	88152950	0	2	892,125	0,1064
chr10	88152039	88152421	A549_Myers.15051	0	.	88152039	88152421	0	1	382	0
chr10	88271680	88272423	Rinn_00017851	0	+	88271680	88272423	0	2	466,179	0,564
chr10	88271681	88272423	ENST00000428940	0	+	88271681	88272423	0	2	465,178	0,564
chr10	88271711	88272308	MB435_Burge.8397	0	+	88271711	88272308	0	2	435,63	0,534
chr10	88273101	88274816	A549_Myers.15060	0	.	88273101	88274816	0	1	1715	0
chr10	88273110	88275077	REMC_MyoepithelialBreast.20512	0	.	88273110	88275077	0	1	1967	0
chr10	88273119	88274718	brain_AmbionMAQC.9145	0	.	88273119	88274718	0	1	1599	0
chr10	88273137	88274830	melanoma_Garraway_short_term_cultures.14325	0	.	88273137	88274830	0	1	1693	0
chr10	88273183	88274532	HeLa_polyA+_Chen.7317	0	.	88273183	88274532	0	1	1349	0
chr10	88273251	88274749	T47D_Burge_Thompson.5766	0	.	88273251	88274749	0	1	1498	0
chr10	88273515	88274309	MeWo_Garraway.7130	0	.	88273515	88274309	0	1	794	0
chr10	88273601	88274650	BT474_Burge_Thompson.6577	0	.	88273601	88274650	0	1	1049	0
chr10	88273857	88274613	MDAMB468_Thompson.5371	0	.	88273857	88274613	0	1	756	0
chr10	88285240	88285711	B_Cells_Pritchard.696913	0	.	88285240	88285711	0	1	471	0
chr10	88286022	88286788	B_Cells_Pritchard.696915	0	.	88286022	88286788	0	1	766	0
chr10	88779773	88781776	REMC_MyoepithelialBreast.20601	0	.	88779773	88781776	0	1	2003	0
chr10	88780211	88781461	REMC_BreastStem.11306	0	.	88780211	88781461	0	1	1250	0
chr10	88780234	88781760	REMC_LuminalBreast.22257	0	.	88780234	88781760	0	1	1526	0
chr10	88783141	88783698	REMC_MyoepithelialBreast.20603	0	.	88783141	88783698	0	1	557	0
chr10	88783286	88783743	REMC_BreastStem.11308	0	.	88783286	88783743	0	1	457	0
chr10	88786981	88788848	B_Cells_Pritchard.698729	0	.	88786981	88788848	0	1	1867	0
chr10	88790458	88790965	brain_AmbionMAQC.9177	0	.	88790458	88790965	0	1	507	0
chr10	88952932	88953661	REMC_LuminalBreast.22299	0	.	88952932	88953661	0	1	729	0
chr10	88952959	88953674	H1_polyA+.24732	0	.	88952959	88953674	0	1	715	0
chr10	88952959	88953606	REMC_MyoepithelialBreast.20784	0	.	88952959	88953606	0	1	647	0
chr10	88952992	88953328	HepG2_Caltech_ENCODE.7619	0	.	88952992	88953328	0	1	336	0
chr10	88952995	88953621	REMC_BreastStem.11368	0	.	88952995	88953621	0	1	626	0
chr10	88953020	88953706	brain_AmbionMAQC.9195	0	.	88953020	88953706	0	1	686	0
chr10	88953021	88953417	H9_polyA+.9536	0	.	88953021	88953417	0	1	396	0
chr10	88953028	88953622	HeLa_polyA+_Chen.7390	0	.	88953028	88953622	0	1	594	0
chr10	88953050	88953451	K562.10146	0	.	88953050	88953451	0	1	401	0
chr10	88953170	88953477	A549_Myers.15143	0	.	88953170	88953477	0	1	307	0
chr10	88957537	88958530	REMC_MyoepithelialBreast.20789	0	.	88957537	88958530	0	1	993	0
chr10	88957559	88958521	REMC_LuminalBreast.22304	0	.	88957559	88958521	0	1	962	0
chr10	88957561	88958518	H1_polyA+.24740	0	.	88957561	88958518	0	1	957	0
chr10	88957581	88958517	REMC_BreastStem.11378	0	.	88957581	88958517	0	1	936	0
chr10	88957677	88958528	HeLa_polyA+_Chen.7392	0	.	88957677	88958528	0	1	851	0
chr10	88957768	88958428	brain_AmbionMAQC.9197	0	.	88957768	88958428	0	1	660	0
chr10	88957907	88958516	B_cells_Cheung.41788	0	.	88957907	88958516	0	1	609	0
chr10	88957910	88958519	HepG2_Caltech_ENCODE.7621	0	.	88957910	88958519	0	1	609	0
chr10	88966107	88966714	REMC_LuminalBreast.22314	0	.	88966107	88966714	0	1	607	0
chr10	88966121	88966563	REMC_BreastStem.11387	0	.	88966121	88966563	0	1	442	0
chr10	88966122	88966666	H1_polyA+.24748	0	.	88966122	88966666	0	1	544	0
chr10	88988403	89092349	ENST00000433920	0	-	88988403	89092349	0	6	206,98,54,43,104,371	0,7448,49775,87963,98119,103575
chr10	88988403	89092295	NR_024397	0	-	88988403	89092295	0	6	206,98,54,43,104,317	0,7448,49775,87963,98119,103575
chr10	88993868	89092349	ENST00000446751	0	-	88993868	89092349	0	6	1724,98,54,43,104,371	0,1983,44310,82498,92654,98110
chr10	89086533	89092353	MIP101.14223	0	-	89086533	89092353	0	2	93,375	0,5445
chr10	89091943	89092328	REMC_MyoepithelialBreast.20843	0	.	89091943	89092328	0	1	385	0
chr10	89091974	89092357	B_cells_Cheung.41834	0	.	89091974	89092357	0	1	383	0
chr10	89146431	89146797	K562.10163	0	.	89146431	89146797	0	1	366	0
chr10	89368333	89368792	A549_Myers.15151	0	.	89368333	89368792	0	1	459	0
chr10	89372377	89372793	B_Cells_Pritchard.699673	0	.	89372377	89372793	0	1	416	0
chr10	89606597	89607167	B_cells_Cheung.41938	0	.	89606597	89607167	0	1	570	0
chr10	89732072	89732814	REMC_LuminalBreast.22442	0	.	89732072	89732814	0	1	742	0
chr10	89735546	89737976	REMC_MyoepithelialBreast.20946	0	.	89735546	89737976	0	1	2430	0
chr10	89853784	89854682	B_Cells_Pritchard.700967	0	.	89853784	89854682	0	1	898	0
chr10	89853789	89854521	B_cells_Cheung.41999	0	.	89853789	89854521	0	1	732	0
chr10	89862041	89865151	B_Cells_Pritchard.700993	0	.	89862041	89865151	0	1	3110	0
chr10	89863788	89864652	B_cells_Cheung.42010	0	.	89863788	89864652	0	1	864	0
chr10	89865279	89866445	B_Cells_Pritchard.700995	0	.	89865279	89866445	0	1	1166	0
chr10	89865986	89866778	B_cells_Cheung.42014	0	.	89865986	89866778	0	1	792	0
chr10	89866832	89867309	B_cells_Cheung.42015	0	.	89866832	89867309	0	1	477	0
chr10	89869529	89870313	B_Cells_Pritchard.701009	0	.	89869529	89870313	0	1	784	0
chr10	89872801	89874087	B_cells_Cheung.42021	0	.	89872801	89874087	0	1	1286	0
chr10	89873099	89875428	B_Cells_Pritchard.701017	0	.	89873099	89875428	0	1	2329	0
chr10	89883432	89883891	B_cells_Cheung.42004	0	.	89883432	89883891	0	1	459	0
chr10	89883982	89884863	B_cells_Cheung.42005	0	.	89883982	89884863	0	1	881	0
chr10	89888571	89889283	B_cells_Cheung.42024	0	.	89888571	89889283	0	1	712	0
chr10	89909931	89911929	B_cells_Cheung.42037	0	.	89909931	89911929	0	1	1998	0
chr10	89927323	89928283	brain_AmbionMAQC.9233	0	.	89927323	89928283	0	1	960	0
chr10	89927435	89928315	B_Cells_Pritchard.701277	0	-	89927435	89928315	0	1	880	0
chr10	89927451	89929164	B_cells_Cheung.42049	0	.	89927451	89929164	0	1	1713	0
chr10	89977456	89978689	B_cells_Cheung.42067	0	.	89977456	89978689	0	1	1233	0
chr10	89977964	89978379	B_Cells_Pritchard.701477	0	.	89977964	89978379	0	1	415	0
chr10	89979578	89980403	prostate_carcinoma.21345	0	.	89979578	89980403	0	1	825	0
chr10	89979655	89980387	B_Cells_Pritchard.701485	0	.	89979655	89980387	0	1	732	0
chr10	89979849	89980391	B_cells_Cheung.42068	0	.	89979849	89980391	0	1	542	0
chr10	89982782	89983531	B_cells_Cheung.42071	0	.	89982782	89983531	0	1	749	0
chr10	89993743	89994183	B_cells_Cheung.42077	0	.	89993743	89994183	0	1	440	0
chr10	89995558	89997210	melanoma_Garraway_short_term_cultures.14436	0	.	89995558	89997210	0	1	1652	0
chr10	90767257	90767631	B_Cells_Pritchard.703849	0	.	90767257	90767631	0	1	374	0
chr10	90767333	90775865	prostate_carcinoma.22197	0	-	90767333	90775865	0	3	178,125,1169	0,470,7363
chr10	90768013	90770609	REMC_LuminalBreast.22506	0	.	90768013	90770609	0	1	2596	0
chr10	90768256	90771027	B_Cells_Pritchard.703853	0	.	90768256	90771027	0	1	2771	0
chr10	90768262	90777364	B_cells_Cheung.42216	0	.	90768262	90777364	0	1	9102	0
chr10	90771670	90776711	B_Cells_Pritchard.703857	0	.	90771670	90776711	0	1	5041	0
chr10	90791565	90792372	B_Cells_Pritchard.703895	0	.	90791565	90792372	0	1	807	0
chr10	90802000	90802323	B_cells_Cheung.42226	0	.	90802000	90802323	0	1	323	0
chr10	90825804	90826735	B_Cells_Pritchard.704009	0	.	90825804	90826735	0	1	931	0
chr10	91172322	91173075	B_cells_Cheung.42298	0	.	91172322	91173075	0	1	753	0
chr10	91172535	91175073	B_Cells_Pritchard.704859	0	.	91172535	91175073	0	1	2538	0
chr10	91172709	91176319	H1_polyA+.24950	0	.	91172709	91176319	0	1	3610	0
chr10	91174207	91174934	B_cells_Cheung.42300	0	.	91174207	91174934	0	1	727	0
chr10	91174251	91174924	CD4_Plagnol_activated.13815	0	.	91174251	91174924	0	1	673	0
chr10	91329253	91331071	H9_polyA+.9607	0	.	91329253	91331071	0	1	1818	0
chr10	91330577	91331040	kidney_Raymond.23754	0	.	91330577	91331040	0	1	463	0
chr10	91330600	91331149	brain_AmbionMAQC.9283	0	.	91330600	91331149	0	1	549	0
chr10	91397721	91398220	B_Cells_Pritchard.705513	0	.	91397721	91398220	0	1	499	0
chr10	91402385	91404081	MIP101.14372	0	.	91402385	91404081	0	1	1696	0
chr10	91402584	91403739	B_cells_Cheung.42326	0	.	91402584	91403739	0	1	1155	0
chr10	91405771	91406193	B_cells_Cheung.42328	0	.	91405771	91406193	0	1	422	0
chr10	91415521	91419194	H1_polyA+.24959	0	.	91415521	91419194	0	1	3673	0
chr10	91417252	91418575	MIP101.14373	0	.	91417252	91418575	0	1	1323	0
chr10	91417307	91419248	HepG2_Caltech_ENCODE.7692	0	.	91417307	91419248	0	1	1941	0
chr10	91417607	91418652	B_cells_Cheung.42333	0	.	91417607	91418652	0	1	1045	0
chr10	91435600	91436133	B_cells_Cheung.42345	0	.	91435600	91436133	0	1	533	0
chr10	91449074	91451222	B_cells_Cheung.42354	0	-	91449074	91451222	0	2	951,386	0,1762
chr10	91527593	91529654	H1_polyA+.24988	0	.	91527593	91529654	0	1	2061	0
chr10	91529831	91530986	B_Cells_Pritchard.705751	0	.	91529831	91530986	0	1	1155	0
chr10	91530014	91533697	H1_polyA+.24989	0	.	91530014	91533697	0	1	3683	0
chr10	91533090	91533789	MIP101.14471	0	.	91533090	91533789	0	1	699	0
chr10	91533906	91534246	B_Cells_Pritchard.705759	0	.	91533906	91534246	0	1	340	0
chr10	91586964	91587444	testes_Burge.10900	0	.	91586964	91587444	0	1	480	0
chr10	91587006	91587611	MCF7_Burge_Thompson.6307	0	.	91587006	91587611	0	1	605	0
chr10	91587754	91588478	testes_Burge.10901	0	.	91587754	91588478	0	1	724	0
chr10	91587793	91590600	REMC_LuminalBreast.22541	0	.	91587793	91590600	0	1	2807	0
chr10	91660841	91661253	A549_Myers.15255	0	.	91660841	91661253	0	1	412	0
chr10	91730868	91732231	B_cells_Cheung.42395	0	.	91730868	91732231	0	1	1363	0
chr10	91732299	91733091	B_cells_Cheung.42396	0	.	91732299	91733091	0	1	792	0
chr10	91773229	91773594	B_cells_Cheung.42398	0	.	91773229	91773594	0	1	365	0
chr10	91820587	91827427	H1_polyA+.25000	0	.	91820587	91827427	0	1	6840	0
chr10	91825302	91826010	H9_polyA+.9626	0	.	91825302	91826010	0	1	708	0
chr10	91832541	91833394	H1_polyA+.25007	0	.	91832541	91833394	0	1	853	0
chr10	91941513	91943150	H1_polyA+.25059	0	.	91941513	91943150	0	1	1637	0
chr10	91979083	91980053	B_cells_Cheung.42790	0	.	91979083	91980053	0	1	970	0
chr10	92045535	92045955	H1_polyA+.25080	0	.	92045535	92045955	0	1	420	0
chr10	92445521	92447393	HIT000008552	0	-	92445521	92447393	0	1	1872	0
chr10	92743462	92761703	B_cells_Cheung.42858	0	+	92743462	92761703	0	4	1028,30,696,1721	0,11951,12419,16520
chr10	92744355	92756127	Rinn_00017857	0	+	92744355	92756127	0	2	135,247	0,11525
chr10	92744356	92756127	ENST00000412362	0	+	92744356	92756127	0	2	134,246	0,11525
chr10	92747237	92761723	B_Cells_Pritchard.709545	0	-	92747237	92761723	0	2	328,6236	0,8250
chr10	92756578	92758422	B_cells_Cheung.42859	0	.	92756578	92758422	0	1	1844	0
chr10	92909133	92910587	HepG2_Caltech_ENCODE.7751	0	.	92909133	92910587	0	1	1454	0
chr10	92910396	92911999	B_cells_Cheung.42872	0	.	92910396	92911999	0	1	1603	0
chr10	92910524	92911634	REMC_LuminalBreast.22550	0	.	92910524	92911634	0	1	1110	0
chr10	92912068	92912635	CD4_Snyder.16821	0	.	92912068	92912635	0	1	567	0
chr10	93041502	93046371	REMC_MyoepithelialBreast.21060	0	.	93041502	93046371	0	1	4869	0
chr10	93053762	93054102	H1_polyA+.25095	0	.	93053762	93054102	0	1	340	0
chr10	93068733	93069529	REMC_MyoepithelialBreast.21029	0	.	93068733	93069529	0	1	796	0
chr10	93277823	93280073	REMC_MyoepithelialBreast.21051	0	.	93277823	93280073	0	1	2250	0
chr10	93301307	93302565	prostate_carcinoma.21457	0	.	93301307	93302565	0	1	1258	0
chr10	93304903	93305256	ZR751_Thompson.5244	0	.	93304903	93305256	0	1	353	0
chr10	93306253	93306580	brain_AmbionMAQC.9304	0	.	93306253	93306580	0	1	327	0
chr10	93306271	93307200	prostate_carcinoma.21458	0	.	93306271	93307200	0	1	929	0
chr10	93324203	93325062	melanoma_Garraway_short_term_cultures.14509	0	.	93324203	93325062	0	1	859	0
chr10	93368960	93371869	REMC_MyoepithelialBreast.21052	0	.	93368960	93371869	0	1	2909	0
chr10	93369028	93374403	HepG2_Caltech_ENCODE.7734	0	.	93369028	93374403	0	1	5375	0
chr10	93369032	93370921	H1_polyA+.25113	0	.	93369032	93370921	0	1	1889	0
chr10	93369037	93371168	REMC_BreastStem.11566	0	.	93369037	93371168	0	1	2131	0
chr10	93369057	93370898	REMC_LuminalBreast.22562	0	.	93369057	93370898	0	1	1841	0
chr10	93369063	93370118	liver_polyA+.29242	0	.	93369063	93370118	0	1	1055	0
chr10	93369597	93370014	prostate_normal.12405	0	.	93369597	93370014	0	1	417	0
chr10	93616587	93617743	B_Cells_Pritchard.710817	0	.	93616587	93617743	0	1	1156	0
chr10	93622471	93626199	REMC_MyoepithelialBreast.21156	0	.	93622471	93626199	0	1	3728	0
chr10	93624222	93626382	REMC_LuminalBreast.22567	0	.	93624222	93626382	0	1	2160	0
chr10	93624572	93625959	REMC_BreastStem.11576	0	.	93624572	93625959	0	1	1387	0
chr10	93650862	93652742	H1_polyA+.25128	0	.	93650862	93652742	0	1	1880	0
chr10	93781504	93783795	REMC_BreastStem.11761	0	.	93781504	93783795	0	1	2291	0
chr10	93785272	93792774	REMC_BreastStem.11763	0	.	93785272	93792774	0	1	7502	0
chr10	93789895	93795487	REMC_LuminalBreast.22642	0	.	93789895	93795487	0	1	5592	0
chr10	93794118	93796291	B_cells_Cheung.42953	0	.	93794118	93796291	0	1	2173	0
chr10	94431491	94435806	prostate_carcinoma.21561	0	+	94431491	94435806	0	2	240,830	0,3485
chr10	94433945	94435806	prostate_carcinoma.21562	0	.	94433945	94435806	0	1	1861	0
chr10	94434055	94435736	prostate_normal.12466	0	.	94434055	94435736	0	1	1681	0
chr10	94434237	94435777	K562.10292	0	.	94434237	94435777	0	1	1540	0
chr10	94434928	94437062	REMC_MyoepithelialBreast.21170	0	.	94434928	94437062	0	1	2134	0
chr10	94464459	94464926	A549_Myers.15381	0	.	94464459	94464926	0	1	467	0
chr10	94961406	94963528	liver_polyA+.29482	0	-	94961406	94963528	0	2	291,80	0,2042
chr10	95037027	95037892	REMC_BreastStem.11740	0	.	95037027	95037892	0	1	865	0
chr10	95037040	95037856	REMC_MyoepithelialBreast.21291	0	.	95037040	95037856	0	1	816	0
chr10	95038418	95049616	REMC_LuminalBreast.22618	0	-	95038418	95049616	0	2	1722,36	0,11162
chr10	95038418	95040509	REMC_LuminalBreast.22619	0	.	95038418	95040509	0	1	2091	0
chr10	95040378	95041624	REMC_MyoepithelialBreast.21362	0	.	95040378	95041624	0	1	1246	0
chr10	95042539	95044302	REMC_LuminalBreast.22621	0	.	95042539	95044302	0	1	1763	0
chr10	95042608	95044366	REMC_MyoepithelialBreast.21364	0	.	95042608	95044366	0	1	1758	0
chr10	95045649	95047383	REMC_LuminalBreast.22623	0	.	95045649	95047383	0	1	1734	0
chr10	95047463	95048772	REMC_LuminalBreast.22624	0	.	95047463	95048772	0	1	1309	0
chr10	95049838	95051349	REMC_BreastStem.11796	0	.	95049838	95051349	0	1	1511	0
chr10	95050716	95052624	REMC_MyoepithelialBreast.21365	0	.	95050716	95052624	0	1	1908	0
chr10	96365176	96365752	H1_polyA+.25775	0	.	96365176	96365752	0	1	576	0
chr10	96368284	96369552	H1_polyA+.25777	0	.	96368284	96369552	0	1	1268	0
chr10	96372332	96375506	H1_polyA+.25779	0	.	96372332	96375506	0	1	3174	0
chr10	96823908	96826357	REMC_LuminalBreast.22900	0	.	96823908	96826357	0	1	2449	0
chr10	96824675	96825790	H1_polyA+.25327	0	.	96824675	96825790	0	1	1115	0
chr10	96852108	96854628	REMC_MyoepithelialBreast.21325	0	.	96852108	96854628	0	1	2520	0
chr10	96853062	96854414	REMC_LuminalBreast.22904	0	.	96853062	96854414	0	1	1352	0
chr10	96855691	96856829	REMC_LuminalBreast.22906	0	.	96855691	96856829	0	1	1138	0
chr10	96856529	96856882	REMC_MyoepithelialBreast.21326	0	.	96856529	96856882	0	1	353	0
chr10	96859423	96860275	REMC_MyoepithelialBreast.21327	0	.	96859423	96860275	0	1	852	0
chr10	96859457	96859996	B_cells_Cheung.43355	0	.	96859457	96859996	0	1	539	0
chr10	96861169	96875261	REMC_MyoepithelialBreast.21328	0	-	96861169	96875261	0	2	48,13905	0,187
chr10	96864854	96868010	H1_polyA+.25334	0	.	96864854	96868010	0	1	3156	0
chr10	96866479	96867738	B_cells_Cheung.43364	0	.	96866479	96867738	0	1	1259	0
chr10	96868733	96869910	H1_polyA+.25336	0	.	96868733	96869910	0	1	1177	0
chr10	96868790	96871427	REMC_LuminalBreast.22895	0	.	96868790	96871427	0	1	2637	0
chr10	96869505	96869876	B_cells_Cheung.43368	0	.	96869505	96869876	0	1	371	0
chr10	96870222	96870675	B_cells_Cheung.43369	0	.	96870222	96870675	0	1	453	0
chr10	96871147	96873455	B_cells_Cheung.43371	0	.	96871147	96873455	0	1	2308	0
chr10	96871677	96873419	REMC_LuminalBreast.22896	0	.	96871677	96873419	0	1	1742	0
chr10	96875112	96875826	B_cells_Cheung.43374	0	.	96875112	96875826	0	1	714	0
chr10	96875871	96876541	REMC_MyoepithelialBreast.21329	0	.	96875871	96876541	0	1	670	0
chr10	96882608	96887984	H1_polyA+.25366	0	.	96882608	96887984	0	1	5376	0
chr10	96886173	96887544	REMC_MyoepithelialBreast.21332	0	.	96886173	96887544	0	1	1371	0
chr10	96886202	96887622	REMC_LuminalBreast.22911	0	.	96886202	96887622	0	1	1420	0
chr10	96888152	96888889	H1_polyA+.25367	0	.	96888152	96888889	0	1	737	0
chr10	96892080	96893112	B_cells_Cheung.43381	0	.	96892080	96893112	0	1	1032	0
chr10	96912575	96913019	B_cells_Cheung.43390	0	.	96912575	96913019	0	1	444	0
chr10	96917612	96920253	B_cells_Cheung.43391	0	-	96917612	96920253	0	2	1261,226	0,2415
chr10	96934277	96934920	B_cells_Cheung.43403	0	.	96934277	96934920	0	1	643	0
chr10	96934411	96935840	H1_polyA+.25379	0	.	96934411	96935840	0	1	1429	0
chr10	96934466	96935807	REMC_MyoepithelialBreast.21879	0	.	96934466	96935807	0	1	1341	0
chr10	96935075	96936278	REMC_LuminalBreast.22917	0	.	96935075	96936278	0	1	1203	0
chr10	96980318	96981000	H1_polyA+.25363	0	.	96980318	96981000	0	1	682	0
chr10	96980388	96980849	H9_polyA-_Chen.3033	0	.	96980388	96980849	0	1	461	0
chr10	96980411	96980843	H9_polyA+.9769	0	.	96980411	96980843	0	1	432	0
chr10	96980420	96980845	B_Cells_Pritchard.719461	0	-	96980420	96980845	0	1	425	0
chr10	96980425	96980862	prostate_carcinoma.21692	0	.	96980425	96980862	0	1	437	0
chr10	96980430	96980863	MCF7_Burge_Thompson.6390	0	.	96980430	96980863	0	1	433	0
chr10	96981348	96981822	B_cells_Cheung.43438	0	.	96981348	96981822	0	1	474	0
chr10	97044290	97045809	B_cells_Cheung.43554	0	.	97044290	97045809	0	1	1519	0
chr10	97056006	97057112	REMC_MyoepithelialBreast.21914	0	.	97056006	97057112	0	1	1106	0
chr10	97786252	97791222	B_Cells_Pritchard.721351	0	.	97786252	97791222	0	1	4970	0
chr10	97789569	97790479	HepG2_Caltech_ENCODE.7883	0	.	97789569	97790479	0	1	910	0
chr10	97813315	97814479	B_cells_Cheung.43706	0	.	97813315	97814479	0	1	1164	0
chr10	97813398	97814510	B_Cells_Pritchard.721473	0	.	97813398	97814510	0	1	1112	0
chr10	97816997	97824502	B_Cells_Pritchard.721483	0	-	97816997	97824502	0	3	528,240,91	0,1909,7414
chr10	97914857	97917236	T47D_Burge_Thompson.5973	0	.	97914857	97917236	0	1	2379	0
chr10	97918604	97919646	MIP101.14801	0	.	97918604	97919646	0	1	1042	0
chr10	97918646	97920429	REMC_LuminalBreast.22984	0	.	97918646	97920429	0	1	1783	0
chr10	97937703	97938189	B_cells_Cheung.43730	0	.	97937703	97938189	0	1	486	0
chr10	98023806	98025126	B_Cells_Pritchard.721819	0	.	98023806	98025126	0	1	1320	0
chr10	98025235	98027715	B_Cells_Pritchard.721821	0	.	98025235	98027715	0	1	2480	0
chr10	98487257	98489616	B_cells_Cheung.43783	0	.	98487257	98489616	0	1	2359	0
chr10	98489837	98491087	B_cells_Cheung.43784	0	.	98489837	98491087	0	1	1250	0
chr10	98497107	98499228	B_cells_Cheung.43789	0	.	98497107	98499228	0	1	2121	0
chr10	98501582	98502812	B_cells_Cheung.43792	0	.	98501582	98502812	0	1	1230	0
chr10	98504871	98506980	B_cells_Cheung.43795	0	.	98504871	98506980	0	1	2109	0
chr10	98544482	98545415	B_cells_Cheung.43833	0	.	98544482	98545415	0	1	933	0
chr10	98544591	98545086	B_Cells_Pritchard.723055	0	-	98544591	98545086	0	1	495	0
chr10	98552621	98553477	B_cells_Cheung.43843	0	.	98552621	98553477	0	1	856	0
chr10	98570141	98570967	B_cells_Cheung.43864	0	.	98570141	98570967	0	1	826	0
chr10	98576110	98576980	B_Cells_Pritchard.723089	0	.	98576110	98576980	0	1	870	0
chr10	98737317	98739293	NEC_from_H9.15828	0	.	98737317	98739293	0	1	1976	0
chr10	98737348	98739213	melanoma_Garraway_short_term_cultures.14735	0	.	98737348	98739213	0	1	1865	0
chr10	98737407	98743484	CD4_Plagnol_resting.13637	0	.	98737407	98743484	0	1	6077	0
chr10	98737417	98739259	HeLa_polyA+_Chen.7611	0	.	98737417	98739259	0	1	1842	0
chr10	98737429	98739138	MDAMB231_Thompson.4880	0	.	98737429	98739138	0	1	1709	0
chr10	98737446	98737969	A549_Myers.15618	0	.	98737446	98737969	0	1	523	0
chr10	98737615	98738868	brain_AmbionMAQC.9481	0	.	98737615	98738868	0	1	1253	0
chr10	98737691	98738803	HeLa_polyA-_Chen.4016	0	.	98737691	98738803	0	1	1112	0
chr10	98738218	98739060	prostate_normal.12691	0	.	98738218	98739060	0	1	842	0
chr10	98738329	98738952	MeI_Garraway.3782	0	.	98738329	98738952	0	1	623	0
chr10	98739361	98745682	prostate_carcinoma.21930	0	.	98739361	98745682	0	1	6321	0
chr10	98739460	98743476	T47D_Burge_Thompson.5984	0	.	98739460	98743476	0	1	4016	0
chr10	98739460	98745703	H1_polyA+.25597	0	.	98739460	98745703	0	1	6243	0
chr10	98739472	98745680	B_cells_Cheung.43878	0	.	98739472	98745680	0	1	6208	0
chr10	98739474	98745782	MCF7_Burge_Thompson.6446	0	.	98739474	98745782	0	1	6308	0
chr10	98739474	98745682	prostate_carcinoma.21931	0	+	98739474	98745682	0	2	639,4800	0,1408
chr10	98739477	98741491	NEC_from_H9.15832	0	.	98739477	98741491	0	1	2014	0
chr10	98739482	98745680	H9_polyA+.9845	0	.	98739482	98745680	0	1	6198	0
chr10	98739490	98743473	MDAMB468_Thompson.5551	0	.	98739490	98743473	0	1	3983	0
chr10	98739491	98745971	CD4_Plagnol_activated.14071	0	.	98739491	98745971	0	1	6480	0
chr10	98739532	98745841	REMC_BreastStem.11743	0	.	98739532	98745841	0	1	6309	0
chr10	98739557	98742007	MCF10A_Thompson.4842	0	.	98739557	98742007	0	1	2450	0
chr10	98739578	98745183	MDAMB231_Thompson.4882	0	.	98739578	98745183	0	1	5605	0
chr10	98739586	98740024	melanoma_Garraway_short_term_cultures.14736	0	.	98739586	98740024	0	1	438	0
chr10	98739596	98741019	prostate_normal.12692	0	.	98739596	98741019	0	1	1423	0
chr10	98739601	98745680	ZR751_Thompson.5327	0	.	98739601	98745680	0	1	6079	0
chr10	98739616	98745683	K562.10426	0	.	98739616	98745683	0	1	6067	0
chr10	98739630	98743463	BT20_Thompson.4736	0	.	98739630	98743463	0	1	3833	0
chr10	98739649	98740861	HeLa_polyA+_Chen.7613	0	.	98739649	98740861	0	1	1212	0
chr10	98739840	98740732	brain_AmbionMAQC.9482	0	.	98739840	98740732	0	1	892	0
chr10	98741103	98741654	brain_AmbionMAQC.9483	0	.	98741103	98741654	0	1	551	0
chr10	98936858	98937495	B_cells_Cheung.43915	0	.	98936858	98937495	0	1	637	0
chr10	98936902	98937676	B_Cells_Pritchard.724429	0	.	98936902	98937676	0	1	774	0
chr10	98937828	98939265	prostate_carcinoma.21941	0	.	98937828	98939265	0	1	1437	0
chr10	98945888	98946308	A549_Myers.15650	0	.	98945888	98946308	0	1	420	0
chr10	99060580	99063133	REMC_LuminalBreast.23143	0	.	99060580	99063133	0	1	2553	0
chr10	99064076	99067956	REMC_LuminalBreast.23240	0	.	99064076	99067956	0	1	3880	0
chr10	99067231	99067889	REMC_MyoepithelialBreast.22137	0	.	99067231	99067889	0	1	658	0
chr10	99074239	99076327	REMC_MyoepithelialBreast.22140	0	.	99074239	99076327	0	1	2088	0
chr10	99074240	99079700	REMC_BreastStem.11781	0	.	99074240	99079700	0	1	5460	0
chr10	99078202	99080727	H1_polyA+.25881	0	.	99078202	99080727	0	1	2525	0
chr10	99079767	99080446	prostate_carcinoma.21951	0	.	99079767	99080446	0	1	679	0
chr10	99085590	99088852	REMC_BreastStem.11779	0	.	99085590	99088852	0	1	3262	0
chr10	99087037	99087461	prostate_carcinoma.21955	0	.	99087037	99087461	0	1	424	0
chr10	99087674	99088253	K562.10430	0	.	99087674	99088253	0	1	579	0
chr10	99089055	99089813	REMC_BreastStem.11780	0	.	99089055	99089813	0	1	758	0
chr10	99089886	99098280	REMC_MyoepithelialBreast.22143	0	.	99089886	99098280	0	1	8394	0
chr10	99091283	99092213	REMC_BreastStem.11784	0	.	99091283	99092213	0	1	930	0
chr10	99093928	99094955	REMC_BreastStem.11786	0	.	99093928	99094955	0	1	1027	0
chr10	99095223	99095712	REMC_BreastStem.11787	0	.	99095223	99095712	0	1	489	0
chr10	99096385	99098265	REMC_BreastStem.11788	0	.	99096385	99098265	0	1	1880	0
chr10	99098634	99102449	REMC_BreastStem.11789	0	.	99098634	99102449	0	1	3815	0
chr10	99099147	99104357	REMC_LuminalBreast.23316	0	.	99099147	99104357	0	1	5210	0
chr10	99099381	99100183	melanoma_Garraway_short_term_cultures.14746	0	.	99099381	99100183	0	1	802	0
chr10	99100131	99100850	B_Cells_Pritchard.724741	0	.	99100131	99100850	0	1	719	0
chr10	99167940	99168551	MeWo_Garraway.7436	0	.	99167940	99168551	0	1	611	0
chr10	99444825	99446358	REMC_MyoepithelialBreast.21716	0	.	99444825	99446358	0	1	1533	0
chr10	99445198	99446131	REMC_LuminalBreast.23325	0	.	99445198	99446131	0	1	933	0
chr10	99445211	99446470	REMC_BreastStem.11840	0	.	99445211	99446470	0	1	1259	0
chr10	99451297	99451985	REMC_MyoepithelialBreast.21482	0	.	99451297	99451985	0	1	688	0
chr10	99451472	99452276	REMC_BreastStem.11844	0	.	99451472	99452276	0	1	804	0
chr10	99457207	99458484	REMC_MyoepithelialBreast.21483	0	.	99457207	99458484	0	1	1277	0
chr10	100019120	100019436	A549_Myers.15777	0	.	100019120	100019436	0	1	316	0
chr10	100020963	100022553	REMC_LuminalBreast.23547	0	.	100020963	100022553	0	1	1590	0
chr10	100024093	100029438	REMC_LuminalBreast.23546	0	.	100024093	100029438	0	1	5345	0
chr10	100024354	100027147	prostate_carcinoma.22057	0	.	100024354	100027147	0	1	2793	0
chr10	100025112	100026834	REMC_MyoepithelialBreast.21687	0	.	100025112	100026834	0	1	1722	0
chr10	100025634	100027128	H1_polyA+.25756	0	.	100025634	100027128	0	1	1494	0
chr10	100028888	100029462	REMC_MyoepithelialBreast.21689	0	.	100028888	100029462	0	1	574	0
chr10	100029357	100030169	BT474_Burge_Thompson.6822	0	.	100029357	100030169	0	1	812	0
chr10	100029493	100030223	H1_polyA+.25757	0	.	100029493	100030223	0	1	730	0
chr10	100041001	100042058	REMC_LuminalBreast.23398	0	.	100041001	100042058	0	1	1057	0
chr10	100068344	100118039	pHIT000109363	0	+	100068344	100118039	0	3	124,129,98	0,36473,49597
chr10	100068374	100118039	pHIT000018005	0	+	100068374	100118039	0	3	94,129,98	0,36443,49567
chr10	100077784	100078212	A549_Myers.15792	0	.	100077784	100078212	0	1	428	0
chr10	100102250	100104535	pHIT000109364	0	-	100102250	100104535	0	2	132,213	0,2072
chr10	100129855	100131126	prostate_carcinoma.22062	0	.	100129855	100131126	0	1	1271	0
chr10	101180690	101183844	H9_polyA+.9914	0	+	101180690	101183844	0	2	322,552	0,2602
chr10	101271196	101276573	pHIT000109374	0	-	101271196	101276573	0	4	287,142,91,53	0,439,2090,5324
chr10	101271196	101276332	pHIT000109375	0	-	101271196	101276332	0	4	287,142,91,236	0,439,2090,4900
chr10	101271222	101276332	pHIT000109379	0	-	101271222	101276332	0	4	261,142,91,236	0,413,2064,4874
chr10	101271304	101276332	pHIT000082720	0	-	101271304	101276332	0	4	179,142,91,236	0,331,1982,4792
chr10	101273265	101276332	pHIT000018012	0	-	101273265	101276332	0	2	112,236	0,2831
chr10	101279864	101281250	BT474_Burge_Thompson.6846	0	.	101279864	101281250	0	1	1386	0
chr10	101353246	101354102	REMC_MyoepithelialBreast.21737	0	.	101353246	101354102	0	1	856	0
chr10	101507360	101511870	REMC_MyoepithelialBreast.22124	0	.	101507360	101511870	0	1	4510	0
chr10	101507754	101509750	H1_polyA+.25837	0	.	101507754	101509750	0	1	1996	0
chr10	101507830	101512982	B_cells_Cheung.44405	0	.	101507830	101512982	0	1	5152	0
chr10	101508484	101511981	REMC_BreastStem.12125	0	.	101508484	101511981	0	1	3497	0
chr10	101508684	101512048	melanoma_Garraway_short_term_cultures.14892	0	.	101508684	101512048	0	1	3364	0
chr10	101515246	101515599	melanoma_Garraway_short_term_cultures.14894	0	.	101515246	101515599	0	1	353	0
chr10	101525130	101528151	REMC_LuminalBreast.23723	0	.	101525130	101528151	0	1	3021	0
chr10	101614727	101615935	REMC_BreastStem.11929	0	.	101614727	101615935	0	1	1208	0
chr10	101614788	101616096	REMC_LuminalBreast.23459	0	.	101614788	101616096	0	1	1308	0
chr10	101617734	101618923	REMC_BreastStem.11932	0	.	101617734	101618923	0	1	1189	0
chr10	101787251	101788251	kidney_Gilad.19454	0	+	101787251	101788251	0	2	89,511	0,489
chr10	101787944	101789524	HepG2_Caltech_ENCODE.7975	0	.	101787944	101789524	0	1	1580	0
chr10	102018592	102019161	B_cells_Cheung.44546	0	.	102018592	102019161	0	1	569	0
chr10	102084377	102084779	B_Cells_Pritchard.817715	0	+	102084377	102084779	0	1	402	0
chr10	102628035	102628596	A549_Myers.15979	0	.	102628035	102628596	0	1	561	0
chr10	102717791	102719071	REMC_MyoepithelialBreast.21806	0	.	102717791	102719071	0	1	1280	0
chr10	102916454	102918090	ZR751_Thompson.5434	0	.	102916454	102918090	0	1	1636	0
chr10	102940515	102943856	Rinn_00018799	0	+	102940515	102943856	0	3	444,202,413	0,540,2928
chr10	102940693	102942403	ZR751_Thompson.5425	0	+	102940693	102942403	0	2	266,1347	0,363
chr10	102942598	102943922	ZR751_Thompson.5426	0	.	102942598	102943922	0	1	1324	0
chr10	102963296	102963627	A549_Myers.16020	0	.	102963296	102963627	0	1	331	0
chr10	102967176	102967755	A549_Myers.16021	0	.	102967176	102967755	0	1	579	0
chr10	102971509	102973929	B_cells_Cheung.44672	0	+	102971509	102973929	0	2	130,1465	0,955
chr10	102971509	102972334	B_cells_Cheung.44673	0	.	102971509	102972334	0	1	825	0
chr10	102971511	102973903	B_Cells_Pritchard.734073	0	+	102971511	102973903	0	2	720,1439	0,953
chr10	102972443	102973929	B_cells_Cheung.44674	0	.	102972443	102973929	0	1	1486	0
chr10	102985814	102988595	HIT000021553	0	-	102985814	102988595	0	2	1643,910	0,1871
chr10	102985814	102988595	ENST00000430651	0	+	102985814	102988595	0	2	1643,910	0,1871
chr10	102987971	102988593	testes_Burge.11423	0	.	102987971	102988593	0	1	622	0
chr10	102988003	102988540	brain_AmbionMAQC.9697	0	.	102988003	102988540	0	1	537	0
chr10	103022240	103022576	A549_Myers.16026	0	.	103022240	103022576	0	1	336	0
chr10	103034910	103035783	H1_polyA+.25897	0	+	103034910	103035783	0	2	161,615	0,258
chr10	103041367	103042264	A549_Myers.16028	0	.	103041367	103042264	0	1	897	0
chr10	103060764	103061252	ENST00000442188	0	+	103060764	103061252	0	2	223,159	0,329
chr10	103064619	103065123	H1_polyA+.25898	0	.	103064619	103065123	0	1	504	0
chr10	103312796	103313418	A549_Myers.16041	0	.	103312796	103313418	0	1	622	0
chr10	103313385	103318063	B_Cells_Pritchard.735257	0	-	103313385	103318063	0	2	628,569	0,4109
chr10	103315751	103316552	REMC_MyoepithelialBreast.21821	0	.	103315751	103316552	0	1	801	0
chr10	103315833	103316257	B_Cells_Pritchard.735269	0	-	103315833	103316257	0	1	424	0
chr10	103316559	103317983	REMC_LuminalBreast.23615	0	.	103316559	103317983	0	1	1424	0
chr10	103316607	103317985	H1_polyA+.25918	0	.	103316607	103317985	0	1	1378	0
chr10	103316660	103318048	REMC_MyoepithelialBreast.21822	0	.	103316660	103318048	0	1	1388	0
chr10	103318732	103319230	B_cells_Cheung.44720	0	.	103318732	103319230	0	1	498	0
chr10	103456032	103456403	B_cells_Cheung.44785	0	.	103456032	103456403	0	1	371	0
chr10	103459413	103460293	HeLa_polyA+_Chen.7805	0	.	103459413	103460293	0	1	880	0
chr10	103459810	103460281	K562.10588	0	.	103459810	103460281	0	1	471	0
chr10	103477038	103477710	HeLa_polyA+_Chen.7815	0	.	103477038	103477710	0	1	672	0
chr10	103572861	103573209	B_Cells_Pritchard.735805	0	.	103572861	103573209	0	1	348	0
chr10	103820678	103824821	REMC_LuminalBreast.23691	0	.	103820678	103824821	0	1	4143	0
chr10	103821787	103824009	B_Cells_Pritchard.736243	0	-	103821787	103824009	0	2	578,446	0,1776
chr10	103823301	103824539	H1_polyA+.25964	0	.	103823301	103824539	0	1	1238	0
chr10	103823547	103824674	REMC_BreastStem.12051	0	.	103823547	103824674	0	1	1127	0
chr10	103826112	103832165	REMC_LuminalBreast.23693	0	.	103826112	103832165	0	1	6053	0
chr10	103829906	103830991	REMC_MyoepithelialBreast.21863	0	.	103829906	103830991	0	1	1085	0
chr10	103830259	103831494	B_cells_Cheung.44805	0	.	103830259	103831494	0	1	1235	0
chr10	103830306	103831298	H1_polyA+.25965	0	.	103830306	103831298	0	1	992	0
chr10	103832304	103833125	B_cells_Cheung.44806	0	.	103832304	103833125	0	1	821	0
chr10	103832314	103833136	B_Cells_Pritchard.736281	0	+	103832314	103833136	0	1	822	0
chr10	103837380	103838653	H1_polyA+.25968	0	.	103837380	103838653	0	1	1273	0
chr10	103837552	103838433	prostate_carcinoma.22456	0	.	103837552	103838433	0	1	881	0
chr10	103842903	103846697	REMC_LuminalBreast.23696	0	.	103842903	103846697	0	1	3794	0
chr10	103843213	103844097	REMC_MyoepithelialBreast.21866	0	.	103843213	103844097	0	1	884	0
chr10	103847632	103848222	REMC_LuminalBreast.23698	0	.	103847632	103848222	0	1	590	0
chr10	103848779	103850768	REMC_MyoepithelialBreast.21868	0	.	103848779	103850768	0	1	1989	0
chr10	103849034	103850602	H1_polyA+.25974	0	.	103849034	103850602	0	1	1568	0
chr10	103849722	103850430	B_cells_Cheung.44829	0	.	103849722	103850430	0	1	708	0
chr10	103856706	103857274	IMR90_UCSD_REMC.10980	0	+	103856706	103857274	0	1	568	0
chr10	103870399	103871129	ENST00000440123	0	+	103870399	103871129	0	2	321,53	0,677
chr10	103873609	103874887	REMC_LuminalBreast.23702	0	.	103873609	103874887	0	1	1278	0
chr10	103874247	103874884	H1_polyA+.25977	0	.	103874247	103874884	0	1	637	0
chr10	103874520	103874908	B_cells_Cheung.44835	0	.	103874520	103874908	0	1	388	0
chr10	103916531	103917416	REMC_MyoepithelialBreast.21923	0	.	103916531	103917416	0	1	885	0
chr10	103927368	103928197	REMC_BreastStem.12070	0	.	103927368	103928197	0	1	829	0
chr10	103927480	103928530	REMC_MyoepithelialBreast.21931	0	.	103927480	103928530	0	1	1050	0
chr10	103933469	103938197	REMC_MyoepithelialBreast.21934	0	.	103933469	103938197	0	1	4728	0
chr10	103933960	103937572	REMC_BreastStem.12076	0	.	103933960	103937572	0	1	3612	0
chr10	103934023	103935300	REMC_LuminalBreast.23733	0	.	103934023	103935300	0	1	1277	0
chr10	103935762	103936499	REMC_LuminalBreast.23734	0	.	103935762	103936499	0	1	737	0
chr10	103943779	103945723	REMC_MyoepithelialBreast.21936	0	.	103943779	103945723	0	1	1944	0
chr10	103952900	103954240	REMC_MyoepithelialBreast.21939	0	.	103952900	103954240	0	1	1340	0
chr10	103952954	103954902	REMC_BreastStem.12081	0	.	103952954	103954902	0	1	1948	0
chr10	104138464	104140203	REMC_BreastStem.12418	0	.	104138464	104140203	0	1	1739	0
chr10	104138479	104140245	REMC_MyoepithelialBreast.22202	0	.	104138479	104140245	0	1	1766	0
chr10	104138628	104139380	REMC_LuminalBreast.23743	0	.	104138628	104139380	0	1	752	0
chr10	104139636	104141232	REMC_LuminalBreast.23744	0	.	104139636	104141232	0	1	1596	0
chr10	104183994	104184823	REMC_BreastStem.12090	0	.	104183994	104184823	0	1	829	0
chr10	104184422	104185327	REMC_MyoepithelialBreast.21966	0	.	104184422	104185327	0	1	905	0
chr10	104187608	104189705	REMC_BreastStem.12092	0	.	104187608	104189705	0	1	2097	0
chr10	104388593	104389787	prostate_carcinoma.24563	0	.	104388593	104389787	0	1	1194	0
chr10	104389141	104390548	REMC_MyoepithelialBreast.21994	0	.	104389141	104390548	0	1	1407	0
chr10	104391227	104391549	H1_rRNA-depleted_UCSD_REMC.19769	0	.	104391227	104391549	0	1	322	0
chr10	104391246	104391927	REMC_MyoepithelialBreast.21995	0	.	104391246	104391927	0	1	681	0
chr10	104391990	104392352	CD4_Snyder.17626	0	.	104391990	104392352	0	1	362	0
chr10	104392093	104393092	MDAMB468_Thompson.5696	0	.	104392093	104393092	0	1	999	0
chr10	104392111	104392545	adipose_Burge.8345	0	.	104392111	104392545	0	1	434	0
chr10	104392452	104392861	CD4_Snyder.17628	0	.	104392452	104392861	0	1	409	0
chr10	104392512	104392859	IMR90_UCSD_REMC.11069	0	-	104392512	104392859	0	1	347	0
chr10	104392528	104392839	H1_rRNA-depleted_UCSD_REMC.19770	0	.	104392528	104392839	0	1	311	0
chr10	104392552	104393060	NEC_from_H9.16380	0	.	104392552	104393060	0	1	508	0
chr10	104392553	104392857	skeletal_muscle_Burge.6588	0	.	104392553	104392857	0	1	304	0
chr10	104392605	104393217	kidney_Gilad.19787	0	.	104392605	104393217	0	1	612	0
chr10	104392635	104393082	MB435_Burge.8995	0	.	104392635	104393082	0	1	447	0
chr10	104392646	104393133	heart_Burge.6611	0	.	104392646	104393133	0	1	487	0
chr10	104409622	104411969	B_cells_Cheung.45061	0	.	104409622	104411969	0	1	2347	0
chr10	104409638	104412946	melanoma_Garraway_short_term_cultures.15160	0	.	104409638	104412946	0	1	3308	0
chr10	104409645	104411950	MCF7_Burge_Thompson.6669	0	.	104409645	104411950	0	1	2305	0
chr10	104409656	104410748	brain_AmbionMAQC.9856	0	.	104409656	104410748	0	1	1092	0
chr10	104410122	104410471	liver_polyA+.31042	0	.	104410122	104410471	0	1	349	0
chr10	104410459	104411898	HepG2_Caltech_ENCODE.8095	0	.	104410459	104411898	0	1	1439	0
chr10	104410853	104411957	brain_AmbionMAQC.9857	0	.	104410853	104411957	0	1	1104	0
chr10	104411086	104411954	HeLa_polyA+_Chen.7879	0	.	104411086	104411954	0	1	868	0
chr10	104412044	104412575	B_cells_Cheung.45062	0	.	104412044	104412575	0	1	531	0
chr10	104413580	104416448	REMC_BreastStem.12145	0	.	104413580	104416448	0	1	2868	0
chr10	104413608	104413987	B_cells_Cheung.45064	0	.	104413608	104413987	0	1	379	0
chr10	104415122	104416432	melanoma_Garraway_short_term_cultures.15162	0	.	104415122	104416432	0	1	1310	0
chr10	104415511	104416228	CD4_Plagnol_resting.14421	0	.	104415511	104416228	0	1	717	0
chr10	104415568	104416403	CD4_Plagnol_activated.14452	0	.	104415568	104416403	0	1	835	0
chr10	104415578	104416386	prostate_carcinoma.24565	0	.	104415578	104416386	0	1	808	0
chr10	104415635	104416091	A549_Myers.16174	0	.	104415635	104416091	0	1	456	0
chr10	104415640	104416100	HeLa_polyA+_Chen.7882	0	.	104415640	104416100	0	1	460	0
chr10	104415675	104415987	liver_polyA+.30982	0	.	104415675	104415987	0	1	312	0
chr10	104415681	104416014	MCF7_Burge_Thompson.6672	0	.	104415681	104416014	0	1	333	0
chr10	104416676	104421149	B_Cells_Pritchard.737543	0	+	104416676	104421149	0	2	545,3771	0,702
chr10	104417257	104419000	B_cells_Cheung.45066	0	.	104417257	104419000	0	1	1743	0
chr10	104417287	104421915	REMC_MyoepithelialBreast.22001	0	.	104417287	104421915	0	1	4628	0
chr10	104417288	104418783	CD4_Plagnol_resting.14422	0	.	104417288	104418783	0	1	1495	0
chr10	104417328	104419003	MCF7_Burge_Thompson.6673	0	.	104417328	104419003	0	1	1675	0
chr10	104417358	104418412	H1_polyA+.26128	0	.	104417358	104418412	0	1	1054	0
chr10	104417378	104417731	prostate_normal.13020	0	.	104417378	104417731	0	1	353	0
chr10	104418514	104419578	prostate_carcinoma.24566	0	.	104418514	104419578	0	1	1064	0
chr10	104419473	104420729	CD4_Plagnol_resting.14423	0	.	104419473	104420729	0	1	1256	0
chr10	104660960	104663082	REMC_BreastStem.12234	0	.	104660960	104663082	0	1	2122	0
chr10	104664405	104665437	REMC_LuminalBreast.23832	0	.	104664405	104665437	0	1	1032	0
chr10	104829306	104833029	MCF7_Burge_Thompson.6674	0	.	104829306	104833029	0	1	3723	0
chr10	104829531	104830904	A549_Myers.16226	0	.	104829531	104830904	0	1	1373	0
chr10	104829560	104830055	MDAMB231_Thompson.5044	0	.	104829560	104830055	0	1	495	0
chr10	104829582	104830848	melanoma_Garraway_short_term_cultures.15203	0	.	104829582	104830848	0	1	1266	0
chr10	104829603	104831169	HeLa_polyA-_Chen.4176	0	.	104829603	104831169	0	1	1566	0
chr10	104830155	104833897	brain_AmbionMAQC.9901	0	.	104830155	104833897	0	1	3742	0
chr10	104830560	104831562	CD4_Plagnol_activated.14500	0	.	104830560	104831562	0	1	1002	0
chr10	104830622	104833067	MDAMB231_Thompson.5040	0	.	104830622	104833067	0	1	2445	0
chr10	104830933	104832963	BT474_Burge_Thompson.6990	0	.	104830933	104832963	0	1	2030	0
chr10	104831010	104833029	CD4_Plagnol_resting.14064	0	.	104831010	104833029	0	1	2019	0
chr10	104831386	104832161	NEC_from_H9.16442	0	.	104831386	104832161	0	1	775	0
chr10	104831519	104832186	T47D_Burge_Thompson.6250	0	.	104831519	104832186	0	1	667	0
chr10	104832224	104832745	NEC_from_H9.16441	0	.	104832224	104832745	0	1	521	0
chr10	105212851	105213660	B_cells_Cheung.45181	0	.	105212851	105213660	0	1	809	0
chr10	105213768	105214805	B_cells_Cheung.45182	0	.	105213768	105214805	0	1	1037	0
chr10	105218683	105219823	B_Cells_Pritchard.739405	0	.	105218683	105219823	0	1	1140	0
chr10	105220224	105221521	B_Cells_Pritchard.739409	0	.	105220224	105221521	0	1	1297	0
chr10	105240169	105240542	B_Cells_Pritchard.739465	0	.	105240169	105240542	0	1	373	0
chr10	105609482	105610080	prostate_carcinoma.22541	0	.	105609482	105610080	0	1	598	0
chr10	105613069	105614412	prostate_carcinoma.22539	0	.	105613069	105614412	0	1	1343	0
chr10	105614544	105617344	CD4_Plagnol_resting.14147	0	.	105614544	105617344	0	1	2800	0
chr10	105615120	105617330	H1_polyA+.26391	0	.	105615120	105617330	0	1	2210	0
chr10	105616130	105617330	HepG2_Caltech_ENCODE.8158	0	.	105616130	105617330	0	1	1200	0
chr10	105616781	105617226	MIP101.15373	0	.	105616781	105617226	0	1	445	0
chr10	105618379	105619773	HepG2_Caltech_ENCODE.8160	0	.	105618379	105619773	0	1	1394	0
chr10	105618416	105620642	CD4_Plagnol_resting.14149	0	.	105618416	105620642	0	1	2226	0
chr10	105618872	105619470	B_cells_Cheung.45307	0	.	105618872	105619470	0	1	598	0
chr10	105618909	105619483	H1_polyA+.26393	0	.	105618909	105619483	0	1	574	0
chr10	105618949	105620525	CD4_Plagnol_activated.14579	0	.	105618949	105620525	0	1	1576	0
chr10	105618956	105619807	prostate_carcinoma.22543	0	.	105618956	105619807	0	1	851	0
chr10	105618959	105619550	MDAMB231_Thompson.5061	0	.	105618959	105619550	0	1	591	0
chr10	105618982	105619785	MIP101.15375	0	.	105618982	105619785	0	1	803	0
chr10	105618997	105620594	BT474_Burge_Thompson.7023	0	.	105618997	105620594	0	1	1597	0
chr10	105619108	105621104	B_Cells_Pritchard.740747	0	.	105619108	105621104	0	1	1996	0
chr10	105619108	105619441	prostate_normal.13133	0	.	105619108	105619441	0	1	333	0
chr10	105619887	105622692	prostate_carcinoma.22544	0	.	105619887	105622692	0	1	2805	0
chr10	105620869	105622658	CD4_Plagnol_activated.14580	0	.	105620869	105622658	0	1	1789	0
chr10	105620935	105622784	CD4_Plagnol_resting.14150	0	.	105620935	105622784	0	1	1849	0
chr10	105621216	105622653	prostate_normal.13135	0	.	105621216	105622653	0	1	1437	0
chr10	105621218	105622702	MIP101.15377	0	.	105621218	105622702	0	1	1484	0
chr10	105621224	105622774	B_Cells_Pritchard.740749	0	.	105621224	105622774	0	1	1550	0
chr10	105621262	105622779	B_cells_Cheung.45310	0	.	105621262	105622779	0	1	1517	0
chr10	105625386	105626276	B_Cells_Pritchard.740763	0	.	105625386	105626276	0	1	890	0
chr10	105687290	105687918	REMC_BreastStem.12205	0	.	105687290	105687918	0	1	628	0
chr10	105687415	105687979	B_cells_Cheung.45317	0	.	105687415	105687979	0	1	564	0
chr10	105687424	105688211	B_Cells_Pritchard.740855	0	.	105687424	105688211	0	1	787	0
chr10	105687443	105688016	brain_AmbionMAQC.9884	0	.	105687443	105688016	0	1	573	0
chr10	105687606	105689107	MIP101.15380	0	.	105687606	105689107	0	1	1501	0
chr10	106365848	106366721	Rinn_00017862	0	+	106365848	106366721	0	2	53,318	0,555
chr10	107675055	107675404	B_Cells_Pritchard.745695	0	.	107675055	107675404	0	1	349	0
chr10	107781487	107781792	liver_polyA+.31360	0	.	107781487	107781792	0	1	305	0
chr10	107842304	107842847	liver_polyA+.31384	0	.	107842304	107842847	0	1	543	0
chr10	107842304	107842838	kidney_Gilad.20033	0	.	107842304	107842838	0	1	534	0
chr10	107859793	107860186	liver_polyA+.31393	0	.	107859793	107860186	0	1	393	0
chr10	108002459	108009498	HIT000091559	0	+	108002459	108009498	0	2	256,2519	0,4520
chr10	109295052	109297225	MCF7_Burge_Thompson.6721	0	.	109295052	109297225	0	1	2173	0
chr10	109373839	109375110	B_cells_Cheung.45506	0	.	109373839	109375110	0	1	1271	0
chr10	109399587	109400610	B_cells_Cheung.45509	0	.	109399587	109400610	0	1	1023	0
chr10	109444665	109445136	B_cells_Cheung.45516	0	.	109444665	109445136	0	1	471	0
chr10	109466104	109466522	B_cells_Cheung.45526	0	.	109466104	109466522	0	1	418	0
chr10	109481043	109482771	B_cells_Cheung.45531	0	.	109481043	109482771	0	1	1728	0
chr10	109520378	109521030	B_cells_Cheung.45550	0	.	109520378	109521030	0	1	652	0
chr10	109621322	109819042	Rinn_00018040	0	-	109621322	109819042	0	5	179,139,147,148,114	0,168785,169473,171602,197606
chr10	109621323	109819042	ENST00000425050	0	-	109621323	109819042	0	5	178,138,146,147,113	0,168785,169473,171602,197606
chr10	109648231	109650840	B_cells_Cheung.45564	0	-	109648231	109650840	0	2	1023,84	0,2525
chr10	109663508	109665584	H1_polyA+.26474	0	+	109663508	109665584	0	2	1154,672	0,1404
chr10	109663508	109666259	H1_polyA+.26475	0	.	109663508	109666259	0	1	2751	0
chr10	109663544	109665055	HIT000305117	0	+	109663544	109665055	0	1	1511	0
chr10	109663794	109665886	H9_polyA+.10181	0	.	109663794	109665886	0	1	2092	0
chr10	109663827	109664401	NEC_from_H9.16610	0	.	109663827	109664401	0	1	574	0
chr10	109664167	109664534	H1_rRNA-depleted_UCSD_REMC.20010	0	.	109664167	109664534	0	1	367	0
chr10	109664183	109664779	brain_AmbionMAQC.9928	0	.	109664183	109664779	0	1	596	0
chr10	109664201	109665857	MCF7_Burge_Thompson.6730	0	.	109664201	109665857	0	1	1656	0
chr10	109664224	109665607	B_cells_Cheung.45569	0	.	109664224	109665607	0	1	1383	0
chr10	109664310	109665745	B_Cells_Pritchard.749937	0	.	109664310	109665745	0	1	1435	0
chr10	109664883	109665817	NEC_from_H9.16609	0	.	109664883	109665817	0	1	934	0
chr10	109707776	109709058	B_cells_Cheung.45578	0	.	109707776	109709058	0	1	1282	0
chr10	109725432	109727004	B_cells_Cheung.45594	0	.	109725432	109727004	0	1	1572	0
chr10	109851915	109854348	HIT000098124	0	-	109851915	109854348	0	1	2433	0
chr10	109953673	109954139	B_cells_Cheung.45627	0	.	109953673	109954139	0	1	466	0
chr10	109964770	109965288	B_cells_Cheung.45629	0	.	109964770	109965288	0	1	518	0
chr10	110100272	110100587	B_cells_Cheung.45642	0	.	110100272	110100587	0	1	315	0
chr10	110336744	110337074	B_cells_Cheung.45676	0	.	110336744	110337074	0	1	330	0
chr10	110363894	110364419	B_cells_Cheung.45693	0	.	110363894	110364419	0	1	525	0
chr10	110400428	110401040	B_cells_Cheung.45707	0	.	110400428	110401040	0	1	612	0
chr10	110405171	110405744	B_cells_Cheung.45711	0	.	110405171	110405744	0	1	573	0
chr10	110414812	110416529	B_cells_Cheung.45718	0	.	110414812	110416529	0	1	1717	0
chr10	110414852	110417366	B_Cells_Pritchard.751863	0	-	110414852	110417366	0	2	1032,83	0,2431
chr10	111595104	111602478	pHIT000018198	0	+	111595104	111602478	0	4	120,100,59,129	0,2687,5176,7245
chr10	111897592	111898202	MIP101.15505	0	.	111897592	111898202	0	1	610	0
chr10	111898510	111899968	MIP101.15506	0	.	111898510	111899968	0	1	1458	0
chr10	111901092	111901799	MIP101.15507	0	.	111901092	111901799	0	1	707	0
chr10	111901775	111902708	B_Cells_Pritchard.755101	0	.	111901775	111902708	0	1	933	0
chr10	111901940	111903935	MIP101.15508	0	.	111901940	111903935	0	1	1995	0
chr10	111920159	111920462	B_Cells_Pritchard.755171	0	.	111920159	111920462	0	1	303	0
chr10	112058369	112061600	REMC_LuminalBreast.24097	0	.	112058369	112061600	0	1	3231	0
chr10	112061855	112063553	REMC_LuminalBreast.24098	0	.	112061855	112063553	0	1	1698	0
chr10	112105627	112108138	B_Cells_Pritchard.755653	0	.	112105627	112108138	0	1	2511	0
chr10	112106049	112108241	B_cells_Cheung.45834	0	.	112106049	112108241	0	1	2192	0
chr10	112113235	112114046	B_cells_Cheung.45839	0	.	112113235	112114046	0	1	811	0
chr10	112113580	112114070	A549_Myers.16461	0	.	112113580	112114070	0	1	490	0
chr10	112125645	112126228	A549_Myers.16463	0	.	112125645	112126228	0	1	583	0
chr10	112137482	112153711	B_Cells_Pritchard.755815	0	+	112137482	112153711	0	2	449,342	0,15887
chr10	112138199	112139702	B_cells_Cheung.45849	0	.	112138199	112139702	0	1	1503	0
chr10	112159906	112163559	B_Cells_Pritchard.755845	0	.	112159906	112163559	0	1	3653	0
chr10	112160441	112161445	REMC_LuminalBreast.24137	0	.	112160441	112161445	0	1	1004	0
chr10	112162322	112163222	REMC_LuminalBreast.24138	0	.	112162322	112163222	0	1	900	0
chr10	112167377	112167886	B_Cells_Pritchard.755859	0	.	112167377	112167886	0	1	509	0
chr10	112169022	112170018	REMC_MyoepithelialBreast.22359	0	.	112169022	112170018	0	1	996	0
chr10	112170835	112171544	B_Cells_Pritchard.755871	0	.	112170835	112171544	0	1	709	0
chr10	112173284	112173765	B_Cells_Pritchard.755881	0	.	112173284	112173765	0	1	481	0
chr10	112182599	112183213	B_cells_Cheung.45865	0	.	112182599	112183213	0	1	614	0
chr10	112186165	112186639	B_Cells_Pritchard.755931	0	.	112186165	112186639	0	1	474	0
chr10	112186204	112186631	melanoma_Garraway_short_term_cultures.15345	0	.	112186204	112186631	0	1	427	0
chr10	112209490	112209881	A549_Myers.16480	0	.	112209490	112209881	0	1	391	0
chr10	112209936	112210730	A549_Myers.16481	0	.	112209936	112210730	0	1	794	0
chr10	112220211	112220920	REMC_MyoepithelialBreast.22360	0	.	112220211	112220920	0	1	709	0
chr10	112224625	112225389	B_Cells_Pritchard.756049	0	.	112224625	112225389	0	1	764	0
chr10	112224812	112246793	H1_polyA+.26505	0	-	112224812	112246793	0	2	162,658	0,21323
chr10	112224997	112226281	REMC_BreastStem.12289	0	.	112224997	112226281	0	1	1284	0
chr10	112225536	112226416	REMC_MyoepithelialBreast.22389	0	.	112225536	112226416	0	1	880	0
chr10	112226290	112227335	B_Cells_Pritchard.756057	0	.	112226290	112227335	0	1	1045	0
chr10	112228898	112229788	REMC_BreastStem.12290	0	.	112228898	112229788	0	1	890	0
chr10	112229907	112231462	REMC_BreastStem.12291	0	.	112229907	112231462	0	1	1555	0
chr10	112232391	112233080	B_Cells_Pritchard.761089	0	+	112232391	112233080	0	1	689	0
chr10	112232445	112232942	B_cells_Cheung.45868	0	.	112232445	112232942	0	1	497	0
chr10	112236166	112239199	REMC_MyoepithelialBreast.22391	0	.	112236166	112239199	0	1	3033	0
chr10	112237083	112237417	A549_Myers.16485	0	.	112237083	112237417	0	1	334	0
chr10	112245427	112246001	HeLa_polyA+_Chen.7971	0	.	112245427	112246001	0	1	574	0
chr10	112245449	112246363	prostate_carcinoma.22685	0	.	112245449	112246363	0	1	914	0
chr10	112245692	112246398	A549_Myers.16489	0	.	112245692	112246398	0	1	706	0
chr10	112245870	112246280	MDAMB231_Thompson.5095	0	.	112245870	112246280	0	1	410	0
chr10	112262762	112264198	CD4_Plagnol_activated.14649	0	.	112262762	112264198	0	1	1436	0
chr10	112262847	112264208	H1_polyA+.26511	0	.	112262847	112264208	0	1	1361	0
chr10	112263271	112264242	melanoma_Garraway_short_term_cultures.15352	0	.	112263271	112264242	0	1	971	0
chr10	112263610	112264168	prostate_normal.13207	0	.	112263610	112264168	0	1	558	0
chr10	112263650	112264192	A549_Myers.16495	0	.	112263650	112264192	0	1	542	0
chr10	112263747	112264191	MDAMB231_Thompson.5097	0	.	112263747	112264191	0	1	444	0
chr10	112265999	112281152	REMC_MyoepithelialBreast.22395	0	.	112265999	112281152	0	1	15153	0
chr10	112266000	112281155	REMC_LuminalBreast.24184	0	.	112266000	112281155	0	1	15155	0
chr10	112269305	112276070	prostate_carcinoma.22701	0	+	112269305	112276070	0	2	38,999	0,5766
chr10	112272946	112279875	REMC_BreastStem.12361	0	.	112272946	112279875	0	2	3293,3217	0,3712
chr10	112273140	112275807	B_Cells_Pritchard.756293	0	+	112273140	112275807	0	1	2667	0
chr10	112274849	112275386	CD4_Snyder.17835	0	.	112274849	112275386	0	1	537	0
chr10	112274958	112276126	B_cells_Cheung.45911	0	.	112274958	112276126	0	1	1168	0
chr10	112274972	112276135	prostate_normal.13212	0	.	112274972	112276135	0	1	1163	0
chr10	112274973	112276070	prostate_carcinoma.22702	0	.	112274973	112276070	0	1	1097	0
chr10	112275009	112276135	melanoma_Garraway_short_term_cultures.15359	0	.	112275009	112276135	0	1	1126	0
chr10	112275015	112275867	H1_polyA+.26519	0	.	112275015	112275867	0	1	852	0
chr10	112276703	112278119	prostate_carcinoma.22688	0	.	112276703	112278119	0	1	1416	0
chr10	112277025	112277863	H1_polyA+.26520	0	.	112277025	112277863	0	1	838	0
chr10	112280026	112281111	B_cells_Cheung.45917	0	.	112280026	112281111	0	1	1085	0
chr10	112281366	112297814	REMC_LuminalBreast.24185	0	.	112281366	112297814	0	1	16448	0
chr10	112281373	112283756	REMC_MyoepithelialBreast.22396	0	.	112281373	112283756	0	1	2383	0
chr10	112283012	112283763	B_cells_Cheung.45919	0	.	112283012	112283763	0	1	751	0
chr10	112283069	112283755	H1_polyA+.26523	0	.	112283069	112283755	0	1	686	0
chr10	112285745	112287473	H1_polyA+.26524	0	.	112285745	112287473	0	1	1728	0
chr10	112286821	112287395	B_Cells_Pritchard.756335	0	.	112286821	112287395	0	1	574	0
chr10	112288698	112290127	B_Cells_Pritchard.756341	0	.	112288698	112290127	0	1	1429	0
chr10	112288837	112289702	B_cells_Cheung.45924	0	.	112288837	112289702	0	1	865	0
chr10	112294617	112295663	B_Cells_Pritchard.756353	0	.	112294617	112295663	0	1	1046	0
chr10	112590244	112594750	B_cells_Cheung.45976	0	.	112590244	112594750	0	1	4506	0
chr10	112590247	112591003	B_Cells_Pritchard.757055	0	.	112590247	112591003	0	1	756	0
chr10	112594901	112600256	B_cells_Cheung.45977	0	.	112594901	112600256	0	1	5355	0
chr10	112594954	112597788	B_Cells_Pritchard.757067	0	.	112594954	112597788	0	1	2834	0
chr10	112601494	112603361	B_cells_Cheung.45980	0	.	112601494	112603361	0	1	1867	0
chr10	112606935	112607924	B_cells_Cheung.45984	0	.	112606935	112607924	0	1	989	0
chr10	112763626	112764183	B_Cells_Pritchard.759723	0	-	112763626	112764183	0	1	557	0
chr10	112775238	112775943	HepG2_Caltech_ENCODE.8234	0	.	112775238	112775943	0	1	705	0
chr10	112777489	112781139	REMC_MyoepithelialBreast.22404	0	.	112777489	112781139	0	1	3650	0
chr10	112778638	112781588	MIP101.15536	0	.	112778638	112781588	0	1	2950	0
chr10	112778688	112780457	B_cells_Cheung.46002	0	.	112778688	112780457	0	1	1769	0
chr10	112778713	112780449	H1_polyA+.26593	0	.	112778713	112780449	0	1	1736	0
chr10	112778720	112780645	ZR751_Thompson.5554	0	.	112778720	112780645	0	1	1925	0
chr10	112778961	112780449	B_Cells_Pritchard.757371	0	.	112778961	112780449	0	1	1488	0
chr10	112778979	112780096	REMC_BreastStem.12317	0	.	112778979	112780096	0	1	1117	0
chr10	112779253	112780456	HepG2_Caltech_ENCODE.8236	0	.	112779253	112780456	0	1	1203	0
chr10	112779645	112780399	prostate_carcinoma.22722	0	.	112779645	112780399	0	1	754	0
chr10	112779645	112780355	prostate_normal.13224	0	.	112779645	112780355	0	1	710	0
chr10	112781919	112782732	REMC_MyoepithelialBreast.22405	0	.	112781919	112782732	0	1	813	0
chr10	112831834	112832277	A549_Myers.16554	0	.	112831834	112832277	0	1	443	0
chr10	112892618	112939442	pHIT000109508	0	+	112892618	112939442	0	4	167,69,29,140	0,33040,34701,46684
chr10	113175464	113233625	pHIT000109509	0	-	113175464	113233625	0	3	183,179,124	0,54156,58037
chr10	113208261	113209408	B_cells_Cheung.46011	0	.	113208261	113209408	0	1	1147	0
chr10	113227088	113229200	B_cells_Cheung.46013	0	.	113227088	113229200	0	1	2112	0
chr10	113463835	113464255	B_Cells_Pritchard.759083	0	.	113463835	113464255	0	1	420	0
chr10	113571686	113581482	pHIT000109510	0	-	113571686	113581482	0	4	190,179,137,106	0,2373,4601,9690
chr10	113753732	113754306	HepG2_Caltech_ENCODE.8239	0	.	113753732	113754306	0	1	574	0
chr10	113838698	113877178	pHIT000082824	0	-	113838698	113877178	0	3	234,133,305	0,6846,38175
chr10	113838698	113877178	pHIT000018228	0	-	113838698	113877178	0	3	234,169,305	0,6846,38175
chr10	113876159	113877178	pHIT000018230	0	-	113876159	113877178	0	2	48,366	0,653
chr10	113877357	113878617	HepG2_Caltech_ENCODE.8243	0	.	113877357	113878617	0	1	1260	0
chr10	113881702	113883562	HepG2_Caltech_ENCODE.8244	0	.	113881702	113883562	0	1	1860	0
chr10	113886108	113894929	pHIT000018229	0	+	113886108	113894929	0	4	66,162,210,102	0,942,3947,8719
chr10	113886108	113890265	pHIT000083605	0	+	113886108	113890265	0	3	66,162,210	0,942,3947
chr10	113887050	113894929	pHIT000083450	0	+	113887050	113894929	0	3	162,210,102	0,3005,7777
chr10	113887110	113894929	pHIT000018231	0	+	113887110	113894929	0	3	102,210,102	0,2945,7717
chr10	113888040	113888580	breast_Burge.8884	0	.	113888040	113888580	0	1	540	0
chr10	113888963	113889348	breast_Burge.8885	0	.	113888963	113889348	0	1	385	0
chr10	113888971	113889311	liver_polyA+.31551	0	.	113888971	113889311	0	1	340	0
chr10	113889357	113890083	B_Cells_Pritchard.760117	0	.	113889357	113890083	0	1	726	0
chr10	113889378	113890083	HepG2_Caltech_ENCODE.8282	0	.	113889378	113890083	0	1	705	0
chr10	113896005	113897417	HepG2_Caltech_ENCODE.8287	0	.	113896005	113897417	0	1	1412	0
chr10	114055182	114055995	prostate_normal.13236	0	.	114055182	114055995	0	1	813	0
chr10	114570939	114572932	MeWo_Garraway.7845	0	.	114570939	114572932	0	1	1993	0
chr10	114571458	114572409	BT20_Thompson.4937	0	.	114571458	114572409	0	1	951	0
chr10	114571829	114575305	CD4_Plagnol_resting.14292	0	.	114571829	114575305	0	1	3476	0
chr10	114572045	114572548	K562.10846	0	.	114572045	114572548	0	1	503	0
chr10	114572105	114572567	HME_Burge.9177	0	.	114572105	114572567	0	1	462	0
chr10	114572153	114572500	CD4_Snyder.18091	0	.	114572153	114572500	0	1	347	0
chr10	114572158	114572548	lymph_node_Burge.10901	0	.	114572158	114572548	0	1	390	0
chr10	114572203	114572887	NEC_from_H9.16779	0	.	114572203	114572887	0	1	684	0
chr10	114572293	114577381	MDAMB468_Thompson.5795	0	.	114572293	114577381	0	1	5088	0
chr10	114573132	114573478	HME_Burge.9178	0	.	114573132	114573478	0	1	346	0
chr10	114573238	114577488	HIT000094866	0	+	114573238	114577488	0	1	4250	0
chr10	114574114	114577489	HIT000023787	0	+	114574114	114577489	0	1	3375	0
chr10	114574121	114574637	HeLa_polyA-_Chen.4290	0	.	114574121	114574637	0	1	516	0
chr10	114574145	114578086	B_cells_Cheung.46187	0	.	114574145	114578086	0	1	3941	0
chr10	114574172	114577386	MDAMB231_Thompson.5122	0	.	114574172	114577386	0	1	3214	0
chr10	114574182	114577462	prostate_normal.13267	0	.	114574182	114577462	0	1	3280	0
chr10	114574183	114577466	MCF7_Burge_Thompson.6786	0	.	114574183	114577466	0	1	3283	0
chr10	114574191	114575917	H9_polyA+.10231	0	.	114574191	114575917	0	1	1726	0
chr10	114574271	114577457	T47D_Burge_Thompson.6333	0	.	114574271	114577457	0	1	3186	0
chr10	114574274	114577472	melanoma_Garraway_short_term_cultures.15413	0	.	114574274	114577472	0	1	3198	0
chr10	114574434	114577477	MeWo_Garraway.7847	0	.	114574434	114577477	0	1	3043	0
chr10	114574492	114575221	NEC_from_H9.16784	0	.	114574492	114575221	0	1	729	0
chr10	114574717	114577428	BT474_Burge_Thompson.7075	0	.	114574717	114577428	0	1	2711	0
chr10	114574893	114575406	CD4_Plagnol_activated.14742	0	.	114574893	114575406	0	1	513	0
chr10	114575197	114575780	CD4_Snyder.18094	0	.	114575197	114575780	0	1	583	0
chr10	114576013	114576480	liver_polyA+.31654	0	.	114576013	114576480	0	1	467	0
chr10	114579199	114587062	REMC_LuminalBreast.24187	0	.	114579199	114587062	0	1	7863	0
chr10	114580649	114586963	B_cells_Cheung.46190	0	.	114580649	114586963	0	1	6314	0
chr10	114580718	114586901	REMC_MyoepithelialBreast.22539	0	.	114580718	114586901	0	1	6183	0
chr10	114580761	114583076	MIP101.15639	0	.	114580761	114583076	0	1	2315	0
chr10	114580839	114586801	H1_polyA+.26695	0	.	114580839	114586801	0	1	5962	0
chr10	114581490	114595508	B_Cells_Pritchard.762029	0	+	114581490	114595508	0	2	4491,1091	0,12927
chr10	114581633	114583993	melanoma_Garraway_short_term_cultures.15415	0	.	114581633	114583993	0	1	2360	0
chr10	114582456	114583300	prostate_carcinoma.22795	0	.	114582456	114583300	0	1	844	0
chr10	114582617	114583080	MeWo_Garraway.7850	0	.	114582617	114583080	0	1	463	0
chr10	114582711	114584685	REMC_BreastStem.12335	0	.	114582711	114584685	0	1	1974	0
chr10	114583175	114585465	MIP101.15640	0	.	114583175	114585465	0	1	2290	0
chr10	114587023	114591826	B_cells_Cheung.46191	0	.	114587023	114591826	0	1	4803	0
chr10	114587078	114591797	H1_polyA+.26696	0	.	114587078	114591797	0	1	4719	0
chr10	114587097	114595524	REMC_MyoepithelialBreast.22540	0	.	114587097	114595524	0	1	8427	0
chr10	114587114	114589024	REMC_LuminalBreast.24188	0	.	114587114	114589024	0	1	1910	0
chr10	114589122	114595546	REMC_LuminalBreast.24189	0	.	114589122	114595546	0	1	6424	0
chr10	114591882	114593749	B_Cells_Pritchard.762051	0	+	114591882	114593749	0	1	1867	0
chr10	114591888	114594320	B_cells_Cheung.46192	0	.	114591888	114594320	0	1	2432	0
chr10	114591913	114594233	H1_polyA+.26697	0	.	114591913	114594233	0	1	2320	0
chr10	114592176	114592929	REMC_BreastStem.12337	0	.	114592176	114592929	0	1	753	0
chr10	114592480	114593793	prostate_carcinoma.22798	0	.	114592480	114593793	0	1	1313	0
chr10	114594388	114595501	H1_polyA+.26698	0	.	114594388	114595501	0	1	1113	0
chr10	114594389	114595512	B_cells_Cheung.46193	0	.	114594389	114595512	0	1	1123	0
chr10	114594432	114595501	MIP101.15641	0	.	114594432	114595501	0	1	1069	0
chr10	114594482	114595509	prostate_carcinoma.22799	0	.	114594482	114595509	0	1	1027	0
chr10	114595675	114602689	REMC_LuminalBreast.24190	0	.	114595675	114602689	0	1	7014	0
chr10	114596497	114601652	B_cells_Cheung.46195	0	.	114596497	114601652	0	1	5155	0
chr10	114596515	114601657	B_Cells_Pritchard.762059	0	.	114596515	114601657	0	1	5142	0
chr10	114596525	114602508	MIP101.15636	0	.	114596525	114602508	0	1	5983	0
chr10	114596528	114599124	H1_polyA+.26700	0	.	114596528	114599124	0	1	2596	0
chr10	114596553	114601767	prostate_carcinoma.22801	0	.	114596553	114601767	0	1	5214	0
chr10	114598328	114599185	HepG2_Caltech_ENCODE.8272	0	.	114598328	114599185	0	1	857	0
chr10	114605618	114606428	HepG2_Caltech_ENCODE.8276	0	.	114605618	114606428	0	1	810	0
chr10	114605888	114606352	A549_Myers.16602	0	.	114605888	114606352	0	1	464	0
chr10	114608032	114615758	REMC_MyoepithelialBreast.22413	0	.	114608032	114615758	0	1	7726	0
chr10	114608358	114612571	H1_polyA+.26618	0	.	114608358	114612571	0	1	4213	0
chr10	114608442	114610193	REMC_LuminalBreast.24192	0	.	114608442	114610193	0	1	1751	0
chr10	114609291	114611442	B_cells_Cheung.46202	0	.	114609291	114611442	0	1	2151	0
chr10	114609578	114609917	B_Cells_Pritchard.762081	0	-	114609578	114609917	0	1	339	0
chr10	114609741	114612547	prostate_carcinoma.22806	0	.	114609741	114612547	0	1	2806	0
chr10	114609758	114610241	prostate_normal.13270	0	.	114609758	114610241	0	1	483	0
chr10	114610274	114612594	REMC_LuminalBreast.24193	0	.	114610274	114612594	0	1	2320	0
chr10	114610471	114611341	MIP101.15646	0	.	114610471	114611341	0	1	870	0
chr10	114620648	114623124	REMC_MyoepithelialBreast.22415	0	.	114620648	114623124	0	1	2476	0
chr10	114621349	114628891	REMC_LuminalBreast.24197	0	.	114621349	114628891	0	1	7542	0
chr10	114621365	114622321	H1_polyA+.26623	0	.	114621365	114622321	0	1	956	0
chr10	114622422	114626149	H1_polyA+.26624	0	.	114622422	114626149	0	1	3727	0
chr10	114623246	114628928	REMC_MyoepithelialBreast.22416	0	.	114623246	114628928	0	1	5682	0
chr10	114623358	114624545	B_cells_Cheung.46221	0	.	114623358	114624545	0	1	1187	0
chr10	114638051	114641565	REMC_LuminalBreast.24199	0	.	114638051	114641565	0	1	3514	0
chr10	114638480	114655860	Rinn_00017870	0	+	114638480	114655860	0	3	76,108,136	0,2233,17244
chr10	114640773	114643490	H1_polyA+.26630	0	.	114640773	114643490	0	1	2717	0
chr10	114640970	114643033	REMC_MyoepithelialBreast.22421	0	.	114640970	114643033	0	1	2063	0
chr10	114641124	114642293	B_cells_Cheung.46230	0	.	114641124	114642293	0	1	1169	0
chr10	114644643	114645907	B_Cells_Pritchard.762235	0	.	114644643	114645907	0	1	1264	0
chr10	114646049	114647292	H1_polyA+.26632	0	.	114646049	114647292	0	1	1243	0
chr10	114650537	114651569	REMC_LuminalBreast.24204	0	.	114650537	114651569	0	1	1032	0
chr10	114652445	114653106	REMC_MyoepithelialBreast.22426	0	.	114652445	114653106	0	1	661	0
chr10	114652445	114653100	H1_polyA+.26633	0	.	114652445	114653100	0	1	655	0
chr10	114656314	114657281	B_cells_Cheung.46244	0	.	114656314	114657281	0	1	967	0
chr10	114660047	114661951	REMC_LuminalBreast.24462	0	.	114660047	114661951	0	1	1904	0
chr10	114660348	114661677	REMC_MyoepithelialBreast.22587	0	.	114660348	114661677	0	1	1329	0
chr10	114661338	114661678	B_cells_Cheung.46249	0	.	114661338	114661678	0	1	340	0
chr10	114662081	114663329	B_Cells_Pritchard.762321	0	.	114662081	114663329	0	1	1248	0
chr10	114663873	114667916	B_cells_Cheung.46253	0	.	114663873	114667916	0	1	4043	0
chr10	114665375	114666586	H1_polyA+.26745	0	.	114665375	114666586	0	1	1211	0
chr10	114665435	114666611	REMC_LuminalBreast.24465	0	.	114665435	114666611	0	1	1176	0
chr10	114666128	114666671	B_Cells_Pritchard.762327	0	.	114666128	114666671	0	1	543	0
chr10	114676344	114678543	H1_polyA+.26739	0	.	114676344	114678543	0	1	2199	0
chr10	114676347	114677429	B_cells_Cheung.46262	0	.	114676347	114677429	0	1	1082	0
chr10	114676365	114677551	REMC_MyoepithelialBreast.22594	0	.	114676365	114677551	0	1	1186	0
chr10	114676404	114677389	prostate_carcinoma.22812	0	.	114676404	114677389	0	1	985	0
chr10	114676416	114677429	REMC_LuminalBreast.24471	0	.	114676416	114677429	0	1	1013	0
chr10	114676763	114677398	melanoma_Garraway_short_term_cultures.15420	0	.	114676763	114677398	0	1	635	0
chr10	114680038	114681220	REMC_MyoepithelialBreast.22596	0	.	114680038	114681220	0	1	1182	0
chr10	114680122	114681807	REMC_LuminalBreast.24473	0	.	114680122	114681807	0	1	1685	0
chr10	114687267	114689550	REMC_MyoepithelialBreast.22599	0	.	114687267	114689550	0	1	2283	0
chr10	114687504	114689439	REMC_LuminalBreast.24476	0	.	114687504	114689439	0	1	1935	0
chr10	114690555	114694197	Rinn_00018339	0	+	114690555	114694197	0	2	353,191	0,3451
chr10	115050019	115050717	REMC_MyoepithelialBreast.22549	0	.	115050019	115050717	0	1	698	0
chr10	115062570	115063050	REMC_MyoepithelialBreast.22552	0	.	115062570	115063050	0	1	480	0
chr10	115099392	115100945	REMC_MyoepithelialBreast.22556	0	.	115099392	115100945	0	1	1553	0
chr10	115170999	115171350	A549_Myers.16633	0	.	115170999	115171350	0	1	351	0
chr10	115203420	115204788	REMC_MyoepithelialBreast.22564	0	.	115203420	115204788	0	1	1368	0
chr10	115211481	115213756	REMC_MyoepithelialBreast.22569	0	.	115211481	115213756	0	1	2275	0
chr10	115213896	115215062	REMC_MyoepithelialBreast.22570	0	.	115213896	115215062	0	1	1166	0
chr10	115223900	115225191	REMC_MyoepithelialBreast.22575	0	.	115223900	115225191	0	1	1291	0
chr10	115234998	115241884	prostate_normal.13294	0	-	115234998	115241884	0	2	368,143	0,6743
chr10	115283838	115284161	B_cells_Cheung.46322	0	.	115283838	115284161	0	1	323	0
chr10	115663498	115664276	H9_polyA-_Chen.3197	0	.	115663498	115664276	0	1	778	0
chr10	115663700	115664106	MeWo_Garraway.7884	0	.	115663700	115664106	0	1	406	0
chr10	115762397	115762787	A549_Myers.16664	0	.	115762397	115762787	0	1	390	0
chr10	115790676	115791373	B_cells_Cheung.46394	0	.	115790676	115791373	0	1	697	0
chr10	115811975	115834202	pHIT000109529	0	+	115811975	115834202	0	3	74,126,127	0,358,22100
chr10	115812719	115813716	prostate_carcinoma.22931	0	.	115812719	115813716	0	1	997	0
chr10	115848192	115848724	prostate_carcinoma.22927	0	.	115848192	115848724	0	1	532	0
chr10	115849601	115851083	prostate_carcinoma.22929	0	.	115849601	115851083	0	1	1482	0
chr10	115849735	115850860	prostate_normal.13331	0	.	115849735	115850860	0	1	1125	0
chr10	116157921	116162623	REMC_LuminalBreast.25343	0	.	116157921	116162623	0	1	4702	0
chr10	116158227	116159538	REMC_MyoepithelialBreast.23467	0	.	116158227	116159538	0	1	1311	0
chr10	116165287	116169846	REMC_LuminalBreast.25345	0	.	116165287	116169846	0	1	4559	0
chr10	116165329	116169780	REMC_MyoepithelialBreast.23471	0	.	116165329	116169780	0	1	4451	0
chr10	116174193	116177147	HIT000011504	0	-	116174193	116177147	0	1	2954	0
chr10	116174325	116176112	REMC_BreastStem.12371	0	.	116174325	116176112	0	1	1787	0
chr10	116175226	116176053	CD4_Plagnol_activated.14776	0	.	116175226	116176053	0	1	827	0
chr10	116178963	116179484	CD4_Plagnol_resting.15139	0	.	116178963	116179484	0	1	521	0
chr10	116435675	116436060	REMC_MyoepithelialBreast.23538	0	.	116435675	116436060	0	1	385	0
chr10	116445486	116446814	REMC_LuminalBreast.25450	0	.	116445486	116446814	0	1	1328	0
chr10	116445662	116448164	REMC_MyoepithelialBreast.23542	0	.	116445662	116448164	0	1	2502	0
chr10	116452867	116456537	REMC_MyoepithelialBreast.23546	0	.	116452867	116456537	0	1	3670	0
chr10	116454235	116457041	REMC_LuminalBreast.25456	0	.	116454235	116457041	0	1	2806	0
chr10	116457566	116458923	REMC_LuminalBreast.25457	0	.	116457566	116458923	0	1	1357	0
chr10	116472408	116473947	REMC_LuminalBreast.25466	0	.	116472408	116473947	0	1	1539	0
chr10	116473144	116474373	REMC_MyoepithelialBreast.23556	0	.	116473144	116474373	0	1	1229	0
chr10	116474053	116478269	REMC_LuminalBreast.25467	0	.	116474053	116478269	0	1	4216	0
chr10	116474501	116476353	REMC_MyoepithelialBreast.23557	0	.	116474501	116476353	0	1	1852	0
chr10	116483923	116486976	REMC_MyoepithelialBreast.23562	0	.	116483923	116486976	0	1	3053	0
chr10	116499283	116500190	REMC_LuminalBreast.25480	0	.	116499283	116500190	0	1	907	0
chr10	116502590	116503191	REMC_LuminalBreast.25484	0	.	116502590	116503191	0	1	601	0
chr10	116502647	116503672	REMC_MyoepithelialBreast.23571	0	.	116502647	116503672	0	1	1025	0
chr10	116510222	116528198	REMC_LuminalBreast.25488	0	+	116510222	116528198	0	2	4495,499	0,17477
chr10	116510222	116517654	REMC_LuminalBreast.25489	0	.	116510222	116517654	0	1	7432	0
chr10	116510820	116511865	H1_polyA+.26817	0	.	116510820	116511865	0	1	1045	0
chr10	116511186	116511507	ovary_Raymond.62176	0	.	116511186	116511507	0	1	321	0
chr10	116513288	116517573	REMC_MyoepithelialBreast.23575	0	.	116513288	116517573	0	1	4285	0
chr10	116517477	116517900	A549_Myers.16723	0	.	116517477	116517900	0	1	423	0
chr10	116517809	116518211	heart_Burge.6839	0	.	116517809	116518211	0	1	402	0
chr10	116517810	116518175	adipose_Burge.8600	0	.	116517810	116518175	0	1	365	0
chr10	116517813	116518182	colon_Burge.8500	0	.	116517813	116518182	0	1	369	0
chr10	116545998	116546937	B_cells_Cheung.46530	0	.	116545998	116546937	0	1	939	0
chr10	116546250	116547332	melanoma_Garraway_short_term_cultures.15498	0	.	116546250	116547332	0	1	1082	0
chr10	116568832	116570423	H1_polyA+.26820	0	.	116568832	116570423	0	1	1591	0
chr10	116747093	116780147	pHIT000083376	0	+	116747093	116780147	0	8	86,93,122,90,46,183,115,39	0,313,4255,4594,6918,15417,26936,33015
chr10	116748623	116748982	B_Cells_Pritchard.767991	0	+	116748623	116748982	0	1	359	0
chr10	116750296	116751621	B_Cells_Pritchard.767997	0	.	116750296	116751621	0	1	1325	0
chr10	118912364	118913066	A549_Myers.16807	0	.	118912364	118913066	0	1	702	0
chr10	118917350	118918125	A549_Myers.16809	0	.	118917350	118918125	0	1	775	0
chr10	118924421	118925393	A549_Myers.16811	0	.	118924421	118925393	0	1	972	0
chr10	118964114	118967997	H1_polyA+.26861	0	.	118964114	118967997	0	1	3883	0
chr10	118964595	118965904	B_cells_Cheung.46653	0	.	118964595	118965904	0	1	1309	0
chr10	118965365	118966189	B_Cells_Pritchard.773185	0	.	118965365	118966189	0	1	824	0
chr10	118966039	118966821	A549_Myers.16812	0	.	118966039	118966821	0	1	782	0
chr10	118966097	118967770	B_cells_Cheung.46654	0	.	118966097	118967770	0	1	1673	0
chr10	118966165	118968756	pHIT000018282	0	-	118966165	118968756	0	2	697,131	0,2460
chr10	118966340	118967713	B_Cells_Pritchard.773193	0	.	118966340	118967713	0	1	1373	0
chr10	118966360	118966700	H1_rRNA-depleted_UCSD_REMC.20300	0	.	118966360	118966700	0	1	340	0
chr10	118977602	118978010	B_Cells_Pritchard.773231	0	.	118977602	118978010	0	1	408	0
chr10	119125337	119127579	liver_polyA+.32282	0	+	119125337	119127579	0	2	274,1121	0,1121
chr10	119157283	119162496	liver_polyA+.32289	0	+	119157283	119162496	0	2	59,584	0,4629
chr10	119207630	119207932	B_Cells_Pritchard.773993	0	.	119207630	119207932	0	1	302	0
chr10	119222715	119235699	ENST00000424371	0	-	119222715	119235699	0	2	208,246	0,12738
chr10	119233516	119235055	REMC_BreastStem.12450	0	.	119233516	119235055	0	1	1539	0
chr10	119233772	119291835	HIT000096051	0	-	119233772	119291835	0	4	956,3296,89,238	0,3344,7749,57825
chr10	119233775	119238023	HIT000025866	0	-	119233775	119238023	0	1	4248	0
chr10	119233796	119235219	brain_AmbionMAQC.10088	0	.	119233796	119235219	0	1	1423	0
chr10	119233800	119291741	HIT000043406	0	-	119233800	119291741	0	4	1325,874,89,144	0,5738,7721,57797
chr10	119233843	119235051	prostate_carcinoma.23027	0	.	119233843	119235051	0	1	1208	0
chr10	119233941	119239176	H1_polyA+.26875	0	-	119233941	119239176	0	2	355,730	0,4505
chr10	119233968	119235020	BT20_Thompson.4971	0	.	119233968	119235020	0	1	1052	0
chr10	119234455	119235018	H1_polyA+.26877	0	.	119234455	119235018	0	1	563	0
chr10	119234517	119235061	melanoma_Garraway_short_term_cultures.15569	0	.	119234517	119235061	0	1	544	0
chr10	119234553	119235011	prostate_normal.13456	0	.	119234553	119235011	0	1	458	0
chr10	119234587	119235031	testes_Burge.11963	0	.	119234587	119235031	0	1	444	0
chr10	119234672	119235049	kidney_Raymond.25956	0	.	119234672	119235049	0	1	377	0
chr10	119234676	119235056	breast_Burge.9088	0	.	119234676	119235056	0	1	380	0
chr10	119234690	119235065	lymph_node_Burge.11001	0	.	119234690	119235065	0	1	375	0
chr10	119234706	119235027	colon_Burge.8540	0	.	119234706	119235027	0	1	321	0
chr10	119235342	119236759	REMC_BreastStem.12451	0	.	119235342	119236759	0	1	1417	0
chr10	119235360	119236565	testes_Burge.11962	0	.	119235360	119236565	0	1	1205	0
chr10	119235361	119235921	prostate_normal.13457	0	.	119235361	119235921	0	1	560	0
chr10	119235393	119239042	prostate_carcinoma.23028	0	-	119235393	119239042	0	2	472,596	0,3053
chr10	119235393	119236739	prostate_carcinoma.23029	0	.	119235393	119236739	0	1	1346	0
chr10	119235399	119235758	lymph_node_Burge.11000	0	.	119235399	119235758	0	1	359	0
chr10	119235401	119236533	BT20_Thompson.4973	0	.	119235401	119236533	0	1	1132	0
chr10	119235439	119236406	H1_polyA+.26878	0	.	119235439	119236406	0	1	967	0
chr10	119235440	119235886	adipose_Burge.8651	0	.	119235440	119235886	0	1	446	0
chr10	119235859	119240562	khalil_319	0	.	119235859	119240562	0	1	4703	0
chr10	119236229	119238947	breast_Burge.9089	0	-	119236229	119238947	0	2	52,501	0,2217
chr10	119238256	119239176	H1_polyA+.26876	0	.	119238256	119239176	0	1	920	0
chr10	119238264	119238802	BT20_Thompson.4972	0	.	119238264	119238802	0	1	538	0
chr10	119238322	119239042	prostate_carcinoma.23030	0	.	119238322	119239042	0	1	720	0
chr10	119238365	119239175	prostate_normal.13455	0	.	119238365	119239175	0	1	810	0
chr10	119238476	119239015	melanoma_Garraway_short_term_cultures.15571	0	.	119238476	119239015	0	1	539	0
chr10	119238493	119239043	testes_Burge.11967	0	.	119238493	119239043	0	1	550	0
chr10	119239985	119291835	ENST00000440007	0	-	119239985	119291835	0	3	427,89,238	0,1536,51612
chr10	119256314	119270292	khalil_320	0	.	119256314	119270292	0	8	1881,727,886,523,191,133,193,3351	0,1972,4623,7036,7605,8269,10101,10627
chr10	119284096	119284418	A549_Myers.16829	0	.	119284096	119284418	0	1	322	0
chr10	119284577	119287677	pHIT000018288	0	-	119284577	119287677	0	3	528,56,277	0,675,2823
chr10	119285252	119287677	pHIT000083325	0	-	119285252	119287677	0	2	56,277	0,2148
chr10	119288639	119289079	A549_Myers.16830	0	.	119288639	119289079	0	1	440	0
chr10	119302673	119303243	pHIT000109557	0	-	119302673	119303243	0	1	570	0
chr10	119303097	119310878	pHIT000109559	0	-	119303097	119310878	0	3	146,178,99	0,2563,7682
chr10	119311583	119321958	Rinn_00018057	0	-	119311583	119321958	0	3	185,130,163	0,3932,10212
chr10	119311584	119321958	ENST00000450247	0	-	119311584	119321958	0	3	184,129,162	0,3932,10212
chr10	119484355	119497426	Rinn_00018348	0	+	119484355	119497426	0	3	497,147,227	0,1347,12844
chr10	119484427	119502824	Rinn_00018349	0	+	119484427	119502824	0	3	425,147,289	0,1275,18108
chr10	119484436	119485888	testes_Burge.11970	0	+	119484436	119485888	0	2	416,185	0,1267
chr10	119578759	119589162	pHIT000109560	0	-	119578759	119589162	0	4	129,92,79,165	0,669,9819,10238
chr10	119738316	119738767	B_Cells_Pritchard.775299	0	.	119738316	119738767	0	1	451	0
chr10	119752708	119753239	B_cells_Cheung.46662	0	.	119752708	119753239	0	1	531	0
chr10	119803187	119805779	MIP101.15893	0	.	119803187	119805779	0	1	2592	0
chr10	119803997	119805448	prostate_carcinoma.23038	0	.	119803997	119805448	0	1	1451	0
chr10	119842645	119843047	kidney_Raymond.25997	0	.	119842645	119843047	0	1	402	0
chr10	119991143	119997375	Rinn_00017874	0	+	119991143	119997375	0	5	41,105,88,89,176	0,140,3705,3903,6056
chr10	119996495	120001617	pHIT000018290	0	-	119996495	120001617	0	4	228,77,97,225	0,2887,3482,4897
chr10	120003228	120020382	pHIT000018291	0	+	120003228	120020382	0	2	427,221	0,16933
chr10	120021919	120032770	B_Cells_Pritchard.776147	0	-	120021919	120032770	0	2	55,492	0,10359
chr10	120035061	120036607	REMC_BreastStem.12459	0	.	120035061	120036607	0	1	1546	0
chr10	120036649	120041553	REMC_MyoepithelialBreast.22724	0	.	120036649	120041553	0	1	4904	0
chr10	120036804	120041525	REMC_LuminalBreast.24621	0	.	120036804	120041525	0	1	4721	0
chr10	120045563	120051825	B_Cells_Pritchard.776197	0	.	120045563	120051825	0	1	6262	0
chr10	120045983	120052879	B_cells_Cheung.46699	0	.	120045983	120052879	0	1	6896	0
chr10	120047437	120053048	prostate_carcinoma.23049	0	.	120047437	120053048	0	1	5611	0
chr10	120048940	120053009	H1_polyA+.26901	0	.	120048940	120053009	0	1	4069	0
chr10	120053257	120054997	B_Cells_Pritchard.776193	0	.	120053257	120054997	0	1	1740	0
chr10	120053340	120053789	CD4_Plagnol_resting.14380	0	.	120053340	120053789	0	1	449	0
chr10	120053425	120054420	brain_AmbionMAQC.10097	0	.	120053425	120054420	0	1	995	0
chr10	120357567	120358002	A549_Myers.16865	0	.	120357567	120358002	0	1	435	0
chr10	120380580	120381623	REMC_LuminalBreast.24629	0	.	120380580	120381623	0	1	1043	0
chr10	120380809	120381704	REMC_MyoepithelialBreast.22733	0	.	120380809	120381704	0	1	895	0
chr10	120388221	120388980	REMC_LuminalBreast.24632	0	.	120388221	120388980	0	1	759	0
chr10	120394224	120395838	REMC_MyoepithelialBreast.22735	0	.	120394224	120395838	0	1	1614	0
chr10	120395911	120396643	REMC_MyoepithelialBreast.22736	0	.	120395911	120396643	0	1	732	0
chr10	120397522	120398498	REMC_LuminalBreast.24636	0	.	120397522	120398498	0	1	976	0
chr10	120397536	120398166	REMC_MyoepithelialBreast.22737	0	.	120397536	120398166	0	1	630	0
chr10	120400232	120404833	REMC_LuminalBreast.24639	0	.	120400232	120404833	0	1	4601	0
chr10	120400259	120402969	REMC_MyoepithelialBreast.22739	0	.	120400259	120402969	0	1	2710	0
chr10	120402035	120402534	REMC_BreastStem.12463	0	.	120402035	120402534	0	1	499	0
chr10	120403922	120404831	REMC_MyoepithelialBreast.22741	0	.	120403922	120404831	0	1	909	0
chr10	120404990	120407240	REMC_LuminalBreast.24640	0	.	120404990	120407240	0	1	2250	0
chr10	120405060	120407240	REMC_MyoepithelialBreast.22742	0	.	120405060	120407240	0	1	2180	0
chr10	120405098	120405865	REMC_BreastStem.12464	0	.	120405098	120405865	0	1	767	0
chr10	120405951	120407244	REMC_BreastStem.12465	0	.	120405951	120407244	0	1	1293	0
chr10	120407358	120415435	REMC_MyoepithelialBreast.22743	0	.	120407358	120415435	0	1	8077	0
chr10	120407361	120417013	REMC_LuminalBreast.24641	0	.	120407361	120417013	0	1	9652	0
chr10	120416342	120421133	REMC_MyoepithelialBreast.22744	0	.	120416342	120421133	0	1	4791	0
chr10	120417896	120418502	B_Cells_Pritchard.776917	0	.	120417896	120418502	0	1	606	0
chr10	120421250	120422480	HepG2_Caltech_ENCODE.8404	0	.	120421250	120422480	0	1	1230	0
chr10	120422174	120422777	prostate_normal.13475	0	.	120422174	120422777	0	1	603	0
chr10	120543197	120544880	REMC_LuminalBreast.24660	0	.	120543197	120544880	0	1	1683	0
chr10	120558229	120558813	A549_Myers.16873	0	.	120558229	120558813	0	1	584	0
chr10	120560712	120568472	pHIT000109566	0	-	120560712	120568472	0	4	48,47,44,317	0,6895,7310,7443
chr10	120560740	120568472	pHIT000109563	0	-	120560740	120568472	0	4	20,33,44,317	0,6881,7282,7415
chr10	120569689	120570120	B_Cells_Pritchard.777301	0	.	120569689	120570120	0	1	431	0
chr10	120706109	120706515	A549_Myers.16877	0	.	120706109	120706515	0	1	406	0
chr10	120717545	120717866	A549_Myers.16879	0	.	120717545	120717866	0	1	321	0
chr10	120727273	120728206	prostate_carcinoma.23144	0	.	120727273	120728206	0	1	933	0
chr10	120729110	120729598	B_Cells_Pritchard.777663	0	.	120729110	120729598	0	1	488	0
chr10	120751058	120752542	REMC_MyoepithelialBreast.22762	0	.	120751058	120752542	0	1	1484	0
chr10	120751698	120752354	prostate_carcinoma.23145	0	.	120751698	120752354	0	1	656	0
chr10	120752703	120753949	prostate_carcinoma.23146	0	.	120752703	120753949	0	1	1246	0
chr10	120752785	120753887	MIP101.15935	0	.	120752785	120753887	0	1	1102	0
chr10	120753056	120753510	A549_Myers.16880	0	.	120753056	120753510	0	1	454	0
chr10	120770734	120771652	REMC_LuminalBreast.24668	0	.	120770734	120771652	0	1	918	0
chr10	120831409	120832883	REMC_LuminalBreast.24716	0	.	120831409	120832883	0	1	1474	0
chr10	120831415	120831845	B_cells_Cheung.46774	0	.	120831415	120831845	0	1	430	0
chr10	120831883	120833384	REMC_MyoepithelialBreast.22788	0	.	120831883	120833384	0	1	1501	0
chr10	120832144	120833113	B_Cells_Pritchard.777807	0	-	120832144	120833113	0	1	969	0
chr10	120939321	120940188	B_Cells_Pritchard.778749	0	-	120939321	120940188	0	1	867	0
chr10	120955371	120956120	REMC_BreastStem.12494	0	.	120955371	120956120	0	1	749	0
chr10	121206137	121207160	REMC_LuminalBreast.24740	0	.	121206137	121207160	0	1	1023	0
chr10	121206532	121208909	brain_AmbionMAQC.10142	0	.	121206532	121208909	0	1	2377	0
chr10	121206587	121207027	prostate_normal.13529	0	.	121206587	121207027	0	1	440	0
chr10	121206620	121209242	HIT000021954	0	+	121206620	121209242	0	1	2622	0
chr10	121206641	121207171	HeLa_polyA+_Chen.8074	0	.	121206641	121207171	0	1	530	0
chr10	121206672	121207338	CD4_Plagnol_resting.14518	0	.	121206672	121207338	0	1	666	0
chr10	121209962	121211380	B_Cells_Pritchard.778491	0	.	121209962	121211380	0	1	1418	0
chr10	121210361	121211292	B_cells_Cheung.46851	0	.	121210361	121211292	0	1	931	0
chr10	121210722	121211340	CD4_Plagnol_resting.14520	0	.	121210722	121211340	0	1	618	0
chr10	121211495	121212580	B_cells_Cheung.46852	0	.	121211495	121212580	0	1	1085	0
chr10	121211514	121212363	REMC_BreastStem.12506	0	.	121211514	121212363	0	1	849	0
chr10	121211530	121212392	B_Cells_Pritchard.778493	0	.	121211530	121212392	0	1	862	0
chr10	121211673	121212579	CD4_Plagnol_resting.14521	0	.	121211673	121212579	0	1	906	0
chr10	121214461	121214848	B_Cells_Pritchard.778507	0	.	121214461	121214848	0	1	387	0
chr10	121214508	121215049	B_cells_Cheung.46854	0	.	121214508	121215049	0	1	541	0
chr10	121221104	121223491	REMC_LuminalBreast.24741	0	.	121221104	121223491	0	1	2387	0
chr10	121223135	121223943	B_cells_Cheung.46859	0	.	121223135	121223943	0	1	808	0
chr10	121226376	121229590	B_cells_Cheung.46863	0	.	121226376	121229590	0	1	3214	0
chr10	121226448	121229554	B_Cells_Pritchard.778551	0	.	121226448	121229554	0	1	3106	0
chr10	121226470	121229379	REMC_LuminalBreast.24743	0	.	121226470	121229379	0	1	2909	0
chr10	121226832	121228004	prostate_carcinoma.23141	0	.	121226832	121228004	0	1	1172	0
chr10	121229863	121234438	REMC_LuminalBreast.24744	0	.	121229863	121234438	0	1	4575	0
chr10	121229896	121230670	B_cells_Cheung.46864	0	.	121229896	121230670	0	1	774	0
chr10	121230888	121231675	B_cells_Cheung.46865	0	.	121230888	121231675	0	1	787	0
chr10	121230941	121231671	B_Cells_Pritchard.778557	0	-	121230941	121231671	0	1	730	0
chr10	121235390	121240362	REMC_LuminalBreast.24746	0	.	121235390	121240362	0	1	4972	0
chr10	121239129	121239717	A549_Myers.16949	0	.	121239129	121239717	0	1	588	0
chr10	121239194	121240249	CD4_Plagnol_resting.14524	0	.	121239194	121240249	0	1	1055	0
chr10	121240420	121243208	REMC_LuminalBreast.24747	0	.	121240420	121243208	0	1	2788	0
chr10	121241081	121241813	CD4_Plagnol_resting.14527	0	.	121241081	121241813	0	1	732	0
chr10	121241082	121242368	CD4_Plagnol_activated.15145	0	.	121241082	121242368	0	1	1286	0
chr10	121241281	121241850	CD4_Snyder.18393	0	.	121241281	121241850	0	1	569	0
chr10	121243260	121245481	REMC_MyoepithelialBreast.22817	0	.	121243260	121245481	0	1	2221	0
chr10	121243266	121247507	B_cells_Cheung.46874	0	.	121243266	121247507	0	1	4241	0
chr10	121243278	121244351	REMC_BreastStem.12514	0	.	121243278	121244351	0	1	1073	0
chr10	121243284	121246381	REMC_LuminalBreast.24748	0	.	121243284	121246381	0	1	3097	0
chr10	121243307	121247500	CD4_Plagnol_resting.14712	0	.	121243307	121247500	0	1	4193	0
chr10	121243428	121245573	CD4_Plagnol_activated.15147	0	.	121243428	121245573	0	1	2145	0
chr10	121243442	121245476	prostate_carcinoma.23159	0	.	121243442	121245476	0	1	2034	0
chr10	121243472	121245411	prostate_normal.13568	0	.	121243472	121245411	0	1	1939	0
chr10	121243501	121243912	CD4_Snyder.18394	0	.	121243501	121243912	0	1	411	0
chr10	121243503	121244127	melanoma_Garraway_short_term_cultures.15641	0	.	121243503	121244127	0	1	624	0
chr10	121245556	121246528	REMC_MyoepithelialBreast.22818	0	.	121245556	121246528	0	1	972	0
chr10	121246442	121247706	REMC_LuminalBreast.24749	0	.	121246442	121247706	0	1	1264	0
chr10	121350409	121351380	B_cells_Cheung.46893	0	.	121350409	121351380	0	1	971	0
chr10	121354139	121354808	REMC_MyoepithelialBreast.22824	0	.	121354139	121354808	0	1	669	0
chr10	121357110	121358427	B_cells_Cheung.46900	0	.	121357110	121358427	0	1	1317	0
chr10	121357245	121358350	REMC_MyoepithelialBreast.22826	0	.	121357245	121358350	0	1	1105	0
chr10	121358505	121358844	B_cells_Cheung.46901	0	.	121358505	121358844	0	1	339	0
chr10	121362654	121363472	REMC_MyoepithelialBreast.22827	0	.	121362654	121363472	0	1	818	0
chr10	121429243	121431441	REMC_MyoepithelialBreast.22833	0	.	121429243	121431441	0	1	2198	0
chr10	121429429	121431500	B_cells_Cheung.46932	0	.	121429429	121431500	0	1	2071	0
chr10	121429514	121431279	melanoma_Garraway_short_term_cultures.15659	0	.	121429514	121431279	0	1	1765	0
chr10	121429533	121430574	REMC_LuminalBreast.24760	0	.	121429533	121430574	0	1	1041	0
chr10	121429712	121430950	H1_polyA+.26988	0	.	121429712	121430950	0	1	1238	0
chr10	121431071	121432063	REMC_LuminalBreast.24761	0	.	121431071	121432063	0	1	992	0
chr10	121431564	121432162	B_cells_Cheung.46933	0	.	121431564	121432162	0	1	598	0
chr10	121431581	121432029	prostate_normal.13563	0	.	121431581	121432029	0	1	448	0
chr10	121431585	121432165	MB435_Burge.9341	0	.	121431585	121432165	0	1	580	0
chr10	121431588	121432058	prostate_carcinoma.23205	0	.	121431588	121432058	0	1	470	0
chr10	121431617	121432026	A549_Myers.16979	0	.	121431617	121432026	0	1	409	0
chr10	121431636	121432172	H1_polyA+.26989	0	.	121431636	121432172	0	1	536	0
chr10	121435413	121454827	B_Cells_Pritchard.779505	0	-	121435413	121454827	0	4	446,89,149,112	0,18154,18413,19302
chr10	121435635	121436836	H1_polyA+.26991	0	.	121435635	121436836	0	1	1201	0
chr10	121437636	121438746	H1_polyA+.26992	0	.	121437636	121438746	0	1	1110	0
chr10	121439674	121440951	melanoma_Garraway_short_term_cultures.15663	0	.	121439674	121440951	0	1	1277	0
chr10	121441238	121441761	melanoma_Garraway_short_term_cultures.15664	0	.	121441238	121441761	0	1	523	0
chr10	121442931	121443691	B_cells_Cheung.46946	0	.	121442931	121443691	0	1	760	0
chr10	121444170	121445112	B_cells_Cheung.46947	0	.	121444170	121445112	0	1	942	0
chr10	121451211	121453252	H1_polyA+.26997	0	.	121451211	121453252	0	1	2041	0
chr10	121452057	121454666	B_cells_Cheung.46955	0	.	121452057	121454666	0	1	2609	0
chr10	121455423	121456779	B_cells_Cheung.46958	0	.	121455423	121456779	0	1	1356	0
chr10	121455441	121456208	H1_polyA+.26999	0	.	121455441	121456208	0	1	767	0
chr10	121455445	121456200	melanoma_Garraway_short_term_cultures.15670	0	.	121455445	121456200	0	1	755	0
chr10	121458434	121459960	B_cells_Cheung.46961	0	.	121458434	121459960	0	1	1526	0
chr10	121465023	121466993	B_cells_Cheung.46970	0	.	121465023	121466993	0	1	1970	0
chr10	121465059	121466795	melanoma_Garraway_short_term_cultures.15676	0	.	121465059	121466795	0	1	1736	0
chr10	121465149	121465773	MeWo_Garraway.7962	0	.	121465149	121465773	0	1	624	0
chr10	121692304	121692787	CD4_Plagnol_resting.14579	0	.	121692304	121692787	0	1	483	0
chr10	121696654	121697794	B_cells_Cheung.47001	0	.	121696654	121697794	0	1	1140	0
chr10	121696671	121697382	B_Cells_Pritchard.781999	0	-	121696671	121697382	0	1	711	0
chr10	121696718	121697304	REMC_BreastStem.12538	0	.	121696718	121697304	0	1	586	0
chr10	121699620	121702988	REMC_BreastStem.12540	0	.	121699620	121702988	0	1	3368	0
chr10	121699811	121702888	MIP101.15992	0	.	121699811	121702888	0	1	3077	0
chr10	121703213	121704581	MIP101.15993	0	.	121703213	121704581	0	1	1368	0
chr10	121703264	121707473	REMC_LuminalBreast.24768	0	.	121703264	121707473	0	1	4209	0
chr10	121703564	121705004	REMC_BreastStem.12541	0	.	121703564	121705004	0	1	1440	0
chr10	121703791	121704710	melanoma_Garraway_short_term_cultures.15709	0	.	121703791	121704710	0	1	919	0
chr10	121703818	121704586	prostate_carcinoma.23308	0	.	121703818	121704586	0	1	768	0
chr10	121703827	121706030	H1_polyA+.27008	0	.	121703827	121706030	0	1	2203	0
chr10	121703841	121704597	B_cells_Cheung.47007	0	.	121703841	121704597	0	1	756	0
chr10	121706379	121707378	prostate_carcinoma.23311	0	.	121706379	121707378	0	1	999	0
chr10	121706383	121707393	B_Cells_Pritchard.779639	0	.	121706383	121707393	0	1	1010	0
chr10	121944212	121944613	B_cells_Cheung.47021	0	.	121944212	121944613	0	1	401	0
chr10	121945079	121946213	B_cells_Cheung.47022	0	.	121945079	121946213	0	1	1134	0
chr10	121953900	121954414	B_Cells_Pritchard.780263	0	.	121953900	121954414	0	1	514	0
chr10	122004156	122004996	B_cells_Cheung.47030	0	.	122004156	122004996	0	1	840	0
chr10	122030425	122032808	B_cells_Cheung.47136	0	.	122030425	122032808	0	1	2383	0
chr10	122043522	122044267	B_cells_Cheung.47139	0	.	122043522	122044267	0	1	745	0
chr10	122086043	122087535	B_cells_Cheung.47143	0	.	122086043	122087535	0	1	1492	0
chr10	122086045	122086967	prostate_carcinoma.23231	0	.	122086045	122086967	0	1	922	0
chr10	122100438	122100775	B_cells_Cheung.47146	0	.	122100438	122100775	0	1	337	0
chr10	122144937	122145747	B_cells_Cheung.47155	0	.	122144937	122145747	0	1	810	0
chr10	122162169	122162612	B_cells_Cheung.47157	0	.	122162169	122162612	0	1	443	0
chr10	122342048	122344428	brain_AmbionMAQC.10170	0	.	122342048	122344428	0	1	2380	0
chr10	122342081	122344478	MCF10A_Thompson.5142	0	.	122342081	122344478	0	1	2397	0
chr10	122440666	122441109	B_Cells_Pritchard.781393	0	.	122440666	122441109	0	1	443	0
chr10	122511313	122526386	ENST00000456120	0	-	122511313	122526386	0	2	1864,150	0,14923
chr10	122547989	122548450	brain_AmbionMAQC.10176	0	.	122547989	122548450	0	1	461	0
chr10	122548044	122548441	B_Cells_Pritchard.781677	0	.	122548044	122548441	0	1	397	0
chr10	122548071	122548456	B_cells_Cheung.47166	0	.	122548071	122548456	0	1	385	0
chr10	122548882	122551438	prostate_carcinoma.23241	0	.	122548882	122551438	0	1	2556	0
chr10	122548927	122550783	REMC_LuminalBreast.24771	0	.	122548927	122550783	0	1	1856	0
chr10	122549072	122551452	B_cells_Cheung.47167	0	.	122549072	122551452	0	1	2380	0
chr10	122550100	122551055	H1_polyA+.27017	0	.	122550100	122551055	0	1	955	0
chr10	122554133	122555243	REMC_LuminalBreast.24773	0	.	122554133	122555243	0	1	1110	0
chr10	122554541	122555184	brain_AmbionMAQC.10180	0	.	122554541	122555184	0	1	643	0
chr10	122554582	122555433	prostate_carcinoma.23244	0	.	122554582	122555433	0	1	851	0
chr10	122558097	122558732	B_cells_Cheung.47176	0	.	122558097	122558732	0	1	635	0
chr10	122559547	122561742	B_cells_Cheung.47177	0	.	122559547	122561742	0	1	2195	0
chr10	122560105	122561201	B_Cells_Pritchard.781713	0	.	122560105	122561201	0	1	1096	0
chr10	122566440	122567255	prostate_carcinoma.23245	0	.	122566440	122567255	0	1	815	0
chr10	122566540	122568717	B_cells_Cheung.47182	0	.	122566540	122568717	0	1	2177	0
chr10	122567323	122567918	brain_AmbionMAQC.10182	0	.	122567323	122567918	0	1	595	0
chr10	122567768	122570094	B_Cells_Pritchard.781735	0	.	122567768	122570094	0	1	2326	0
chr10	122572177	122573423	B_cells_Cheung.47186	0	.	122572177	122573423	0	1	1246	0
chr10	122572185	122573312	B_Cells_Pritchard.781745	0	.	122572185	122573312	0	1	1127	0
chr10	122572230	122573269	brain_AmbionMAQC.10184	0	.	122572230	122573269	0	1	1039	0
chr10	122572318	122573300	prostate_carcinoma.23249	0	.	122572318	122573300	0	1	982	0
chr10	122581124	122584017	B_cells_Cheung.47192	0	.	122581124	122584017	0	1	2893	0
chr10	122581779	122584070	B_Cells_Pritchard.781773	0	.	122581779	122584070	0	1	2291	0
chr10	122666489	122666852	B_Cells_Pritchard.782039	0	.	122666489	122666852	0	1	363	0
chr10	122679740	122688878	pHIT000018323	0	+	122679740	122688878	0	2	67,254	0,8884
chr10	122694594	122697470	MIP101.16002	0	.	122694594	122697470	0	1	2876	0
chr10	122698452	122719282	MIP101.16004	0	-	122698452	122719282	0	2	4395,10297	0,10533
chr10	122719549	122726591	MIP101.16003	0	.	122719549	122726591	0	1	7042	0
chr10	122726863	122730262	MIP101.16007	0	.	122726863	122730262	0	1	3399	0
chr10	122728901	122729433	A549_Myers.17026	0	.	122728901	122729433	0	1	532	0
chr10	123114415	123114929	B_cells_Cheung.47220	0	.	123114415	123114929	0	1	514	0
chr10	123358281	123358653	A549_Myers.17030	0	.	123358281	123358653	0	1	372	0
chr10	123692206	123693809	REMC_LuminalBreast.24871	0	.	123692206	123693809	0	1	1603	0
chr10	123699375	123700038	B_Cells_Pritchard.784883	0	-	123699375	123700038	0	1	663	0
chr10	123699508	123700051	prostate_carcinoma.23355	0	.	123699508	123700051	0	1	543	0
chr10	123699811	123700168	B_cells_Cheung.47237	0	.	123699811	123700168	0	1	357	0
chr10	124006559	124010667	REMC_LuminalBreast.24874	0	.	124006559	124010667	0	1	4108	0
chr10	124012725	124016088	REMC_LuminalBreast.24877	0	.	124012725	124016088	0	1	3363	0
chr10	124013406	124014523	prostate_carcinoma.23594	0	.	124013406	124014523	0	1	1117	0
chr10	124015226	124016167	prostate_carcinoma.23596	0	.	124015226	124016167	0	1	941	0
chr10	124017100	124018261	REMC_LuminalBreast.24878	0	.	124017100	124018261	0	1	1161	0
chr10	124017882	124018281	prostate_normal.13648	0	.	124017882	124018281	0	1	399	0
chr10	124184426	124188179	REMC_LuminalBreast.24901	0	.	124184426	124188179	0	1	3753	0
chr10	124187021	124187981	REMC_BreastStem.12584	0	.	124187021	124187981	0	1	960	0
chr10	124207973	124208347	prostate_carcinoma.23386	0	.	124207973	124208347	0	1	374	0
chr10	124208382	124208800	prostate_normal.13674	0	.	124208382	124208800	0	1	418	0
chr10	124208659	124209393	prostate_carcinoma.23387	0	.	124208659	124209393	0	1	734	0
chr10	124209018	124209391	A549_Myers.17121	0	.	124209018	124209391	0	1	373	0
chr10	124299868	124300236	A549_Myers.17130	0	.	124299868	124300236	0	1	368	0
chr10	124568321	124573017	ENST00000442370	0	+	124568321	124573017	0	4	104,188,176,68	0,1547,2102,4628
chr10	124873807	124874552	B_Cells_Pritchard.787821	0	.	124873807	124874552	0	1	745	0
chr10	124873949	124876602	B_cells_Cheung.47329	0	.	124873949	124876602	0	1	2653	0
chr10	124880278	124881892	K562.11001	0	.	124880278	124881892	0	1	1614	0
chr10	124882042	124882948	K562.11002	0	.	124882042	124882948	0	1	906	0
chr10	124882211	124883044	H1_polyA+.27200	0	.	124882211	124883044	0	1	833	0
chr10	124891705	124892647	B_cells_Cheung.48251	0	.	124891705	124892647	0	1	942	0
chr10	124892716	124893359	B_cells_Cheung.48252	0	.	124892716	124893359	0	1	643	0
chr10	124932782	124934062	REMC_MyoepithelialBreast.23027	0	.	124932782	124934062	0	1	1280	0
chr10	124933038	124933736	MIP101.16135	0	.	124933038	124933736	0	1	698	0
chr10	124934836	124937031	B_Cells_Pritchard.787931	0	.	124934836	124937031	0	1	2195	0
chr10	124935527	124937111	B_cells_Cheung.47361	0	.	124935527	124937111	0	1	1584	0
chr10	124937194	124944344	B_Cells_Pritchard.787933	0	.	124937194	124944344	0	1	7150	0
chr10	124938864	124946238	pHIT000109617	0	+	124938864	124946238	0	2	237,161	0,7213
chr10	124939138	124943451	H1_polyA+.27219	0	.	124939138	124943451	0	1	4313	0
chr10	124939426	124940899	REMC_MyoepithelialBreast.23029	0	.	124939426	124940899	0	1	1473	0
chr10	124939522	124942702	B_cells_Cheung.47365	0	.	124939522	124942702	0	1	3180	0
chr10	124939862	124942679	HIT000048314	0	+	124939862	124942679	0	1	2817	0
chr10	124941017	124941800	REMC_MyoepithelialBreast.23030	0	.	124941017	124941800	0	1	783	0
chr10	124942914	124944451	B_cells_Cheung.47366	0	.	124942914	124944451	0	1	1537	0
chr10	124943663	124946861	H1_polyA+.27220	0	.	124943663	124946861	0	1	3198	0
chr10	124946180	124946859	B_cells_Cheung.47369	0	.	124946180	124946859	0	1	679	0
chr10	124947141	124953634	H1_polyA+.27221	0	.	124947141	124953634	0	1	6493	0
chr10	124948621	124950524	B_Cells_Pritchard.787951	0	.	124948621	124950524	0	1	1903	0
chr10	124951236	124952770	B_cells_Cheung.47374	0	.	124951236	124952770	0	1	1534	0
chr10	124951700	124953533	B_Cells_Pritchard.787957	0	.	124951700	124953533	0	1	1833	0
chr10	124952365	124952831	H1_rRNA-depleted_UCSD_REMC.20670	0	.	124952365	124952831	0	1	466	0
chr10	124957280	124960433	B_cells_Cheung.47379	0	.	124957280	124960433	0	1	3153	0
chr10	124958719	124960437	H1_polyA+.27224	0	.	124958719	124960437	0	1	1718	0
chr10	124958823	124960693	B_Cells_Pritchard.787977	0	.	124958823	124960693	0	1	1870	0
chr10	124959855	124961229	REMC_MyoepithelialBreast.23031	0	.	124959855	124961229	0	1	1374	0
chr10	124979456	124981922	B_Cells_Pritchard.788009	0	+	124979456	124981922	0	1	2466	0
chr10	124979459	124981597	B_cells_Cheung.47394	0	.	124979459	124981597	0	1	2138	0
chr10	124979466	124982653	H1_polyA+.27232	0	.	124979466	124982653	0	1	3187	0
chr10	124979471	124979993	REMC_LuminalBreast.24941	0	.	124979471	124979993	0	1	522	0
chr10	124979596	124981888	MIP101.16141	0	.	124979596	124981888	0	1	2292	0
chr10	124984494	124989037	H1_polyA+.27234	0	.	124984494	124989037	0	1	4543	0
chr10	124984922	124987014	B_cells_Cheung.47399	0	.	124984922	124987014	0	1	2092	0
chr10	124985012	124986952	B_Cells_Pritchard.788031	0	.	124985012	124986952	0	1	1940	0
chr10	124986946	124989011	MIP101.16143	0	.	124986946	124989011	0	1	2065	0
chr10	124987101	124989042	B_Cells_Pritchard.788033	0	.	124987101	124989042	0	1	1941	0
chr10	124988159	124988977	B_cells_Cheung.47401	0	.	124988159	124988977	0	1	818	0
chr10	124994263	124999234	REMC_MyoepithelialBreast.23046	0	+	124994263	124999234	0	2	131,1096	0,3875
chr10	124997852	125000547	H1_polyA+.27240	0	.	124997852	125000547	0	1	2695	0
chr10	124998809	124999278	B_cells_Cheung.47408	0	.	124998809	124999278	0	1	469	0
chr10	125001417	125009638	H1_polyA+.27243	0	-	125001417	125009638	0	2	2898,5234	0,2987
chr10	125001417	125007437	H1_polyA+.27242	0	+	125001417	125007437	0	2	2783,13	0,6007
chr10	125001417	125009638	H1_polyA+.27241	0	.	125001417	125009638	0	1	8221	0
chr10	125002937	125004289	B_cells_Cheung.47413	0	.	125002937	125004289	0	1	1352	0
chr10	125003671	125004280	HepG2_Caltech_ENCODE.8569	0	.	125003671	125004280	0	1	609	0
chr10	125003702	125004892	prostate_carcinoma.23437	0	.	125003702	125004892	0	1	1190	0
chr10	125003845	125004308	H9_polyA+.10581	0	.	125003845	125004308	0	1	463	0
chr10	125004363	125005086	H9_polyA+.10582	0	.	125004363	125005086	0	1	723	0
chr10	125004387	125004915	B_cells_Cheung.47414	0	.	125004387	125004915	0	1	528	0
chr10	125005095	125005715	prostate_carcinoma.23438	0	.	125005095	125005715	0	1	620	0
chr10	125005105	125005708	B_cells_Cheung.47415	0	.	125005105	125005708	0	1	603	0
chr10	125005176	125005640	H9_polyA+.10583	0	.	125005176	125005640	0	1	464	0
chr10	125005188	125005630	B_Cells_Pritchard.788123	0	.	125005188	125005630	0	1	442	0
chr10	125008117	125010101	B_cells_Cheung.47417	0	.	125008117	125010101	0	1	1984	0
chr10	125009444	125009853	CD4_Plagnol_resting.14731	0	.	125009444	125009853	0	1	409	0
chr10	125009738	125011642	H1_polyA+.27244	0	.	125009738	125011642	0	1	1904	0
chr10	125016988	125018362	H1_polyA+.27248	0	.	125016988	125018362	0	1	1374	0
chr10	125017615	125018250	REMC_MyoepithelialBreast.23054	0	.	125017615	125018250	0	1	635	0
chr10	125018734	125021132	H1_polyA+.27249	0	.	125018734	125021132	0	1	2398	0
chr10	125021433	125023053	H1_polyA+.27250	0	.	125021433	125023053	0	1	1620	0
chr10	125025222	125027538	H1_polyA+.27252	0	.	125025222	125027538	0	1	2316	0
chr10	125028659	125029704	H1_polyA+.27253	0	.	125028659	125029704	0	1	1045	0
chr10	125029108	125029866	REMC_MyoepithelialBreast.23056	0	.	125029108	125029866	0	1	758	0
chr10	125052997	125054126	H1_polyA+.27260	0	.	125052997	125054126	0	1	1129	0
chr10	125054827	125056776	H1_polyA+.27261	0	.	125054827	125056776	0	1	1949	0
chr10	125055858	125062648	HIT000014002	0	+	125055858	125062648	0	2	1667,303	0,6487
chr10	125056720	125057413	B_cells_Cheung.47432	0	.	125056720	125057413	0	1	693	0
chr10	125057051	125057451	B_Cells_Pritchard.788339	0	.	125057051	125057451	0	1	400	0
chr10	125074279	125075702	B_Cells_Pritchard.788415	0	.	125074279	125075702	0	1	1423	0
chr10	125074333	125076471	B_cells_Cheung.47475	0	.	125074333	125076471	0	1	2138	0
chr10	125074904	125076222	H1_polyA+.27265	0	.	125074904	125076222	0	1	1318	0
chr10	125098743	125099608	H1_polyA+.27275	0	.	125098743	125099608	0	1	865	0
chr10	125101128	125102122	H1_polyA+.27277	0	.	125101128	125102122	0	1	994	0
chr10	125102232	125110036	H1_polyA+.27278	0	.	125102232	125110036	0	1	7804	0
chr10	125102232	125111695	H1_polyA+.27279	0	+	125102232	125111695	0	2	7776,871	0,8592
chr10	125104286	125105049	B_Cells_Pritchard.788515	0	.	125104286	125105049	0	1	763	0
chr10	125104363	125109871	REMC_MyoepithelialBreast.23061	0	+	125104363	125109871	0	3	528,134,24	0,1553,5484
chr10	125104393	125105028	B_cells_Cheung.47486	0	.	125104393	125105028	0	1	635	0
chr10	125105945	125267974	Rinn_00017720	0	+	125105945	125267974	0	5	105,233,260,161,846	0,4878,5448,92912,161183
chr10	125105946	125267974	HIT000287145	0	+	125105946	125267974	0	5	104,232,259,160,845	0,4878,5448,92912,161183
chr10	125106154	125108259	REMC_MyoepithelialBreast.23062	0	.	125106154	125108259	0	1	2105	0
chr10	125106436	125119082	B_Cells_Pritchard.788521	0	-	125106436	125119082	0	2	3834,1455	0,11191
chr10	125107979	125108908	B_cells_Cheung.47490	0	.	125107979	125108908	0	1	929	0
chr10	125107997	125108725	HepG2_Caltech_ENCODE.8580	0	.	125107997	125108725	0	1	728	0
chr10	125108524	125109768	REMC_MyoepithelialBreast.23064	0	.	125108524	125109768	0	1	1244	0
chr10	125108970	125109414	B_cells_Cheung.47491	0	.	125108970	125109414	0	1	444	0
chr10	125110390	125111318	B_cells_Cheung.47493	0	.	125110390	125111318	0	1	928	0
chr10	125110676	125111641	prostate_carcinoma.23442	0	.	125110676	125111641	0	1	965	0
chr10	125116209	125118105	B_cells_Cheung.47498	0	.	125116209	125118105	0	1	1896	0
chr10	125138758	125143938	B_cells_Cheung.47505	0	.	125138758	125143938	0	1	5180	0
chr10	125145468	125145875	B_cells_Cheung.47503	0	.	125145468	125145875	0	1	407	0
chr10	125146057	125147966	B_Cells_Pritchard.788677	0	.	125146057	125147966	0	1	1909	0
chr10	125146472	125148115	B_cells_Cheung.47504	0	.	125146472	125148115	0	1	1643	0
chr10	125148967	125149598	B_Cells_Pritchard.788683	0	.	125148967	125149598	0	1	631	0
chr10	125151101	125274376	B_cells_Cheung.47599	0	+	125151101	125274376	0	4	168,160,904,1019	0,47757,59919,122256
chr10	125151151	125152106	B_Cells_Pritchard.788693	0	.	125151151	125152106	0	1	955	0
chr10	125163052	125163952	B_Cells_Pritchard.788735	0	.	125163052	125163952	0	1	900	0
chr10	125174095	125177660	B_cells_Cheung.47621	0	.	125174095	125177660	0	1	3565	0
chr10	125175092	125177367	H1_polyA+.27288	0	.	125175092	125177367	0	1	2275	0
chr10	125175217	125177146	Rinn_00018062	0	-	125175217	125177146	0	2	283,135	0,1794
chr10	125175218	125177146	ENST00000415509	0	-	125175218	125177146	0	2	282,134	0,1794
chr10	125175238	125177299	B_Cells_Pritchard.788779	0	.	125175238	125177299	0	1	2061	0
chr10	125191015	125191400	B_cells_Cheung.47632	0	.	125191015	125191400	0	1	385	0
chr10	125191022	125191552	B_Cells_Pritchard.788839	0	.	125191022	125191552	0	1	530	0
chr10	125191682	125192843	B_Cells_Pritchard.788841	0	.	125191682	125192843	0	1	1161	0
chr10	125191791	125192975	B_cells_Cheung.47633	0	.	125191791	125192975	0	1	1184	0
chr10	125193146	125195542	B_cells_Cheung.47634	0	.	125193146	125195542	0	1	2396	0
chr10	125193154	125195567	B_Cells_Pritchard.788843	0	.	125193154	125195567	0	1	2413	0
chr10	125195608	125196252	B_cells_Cheung.47635	0	.	125195608	125196252	0	1	644	0
chr10	125208504	125209528	H1_polyA+.27292	0	.	125208504	125209528	0	1	1024	0
chr10	125209388	125210645	B_cells_Cheung.47643	0	.	125209388	125210645	0	1	1257	0
chr10	125209653	125210095	B_Cells_Pritchard.788915	0	.	125209653	125210095	0	1	442	0
chr10	125210227	125210640	B_Cells_Pritchard.788917	0	.	125210227	125210640	0	1	413	0
chr10	125213734	125215067	B_cells_Cheung.47645	0	.	125213734	125215067	0	1	1333	0
chr10	125218275	125219159	B_cells_Cheung.47647	0	.	125218275	125219159	0	1	884	0
chr10	125219403	125221173	B_cells_Cheung.47648	0	.	125219403	125221173	0	1	1770	0
chr10	125219457	125220365	B_Cells_Pritchard.788931	0	.	125219457	125220365	0	1	908	0
chr10	125220832	125221169	B_Cells_Pritchard.788935	0	.	125220832	125221169	0	1	337	0
chr10	125227955	125228590	B_Cells_Pritchard.788969	0	.	125227955	125228590	0	1	635	0
chr10	125232485	125302238	Rinn_00018845	0	+	125232485	125302238	0	4	192,89,554,197	0,5942,40871,69556
chr10	125232485	125305937	Rinn_00018369	0	+	125232485	125305937	0	5	192,89,554,197,22	0,5942,40871,69556,73430
chr10	125232485	125302238	Rinn_00018846	0	+	125232485	125302238	0	4	192,124,554,197	0,5942,40871,69556
chr10	125232487	125273957	Rinn_00018371	0	+	125232487	125273957	0	3	190,89,601	0,5940,40869
chr10	125239784	125243255	B_cells_Cheung.47661	0	.	125239784	125243255	0	1	3471	0
chr10	125240802	125243228	B_Cells_Pritchard.789015	0	-	125240802	125243228	0	2	1886,381	0,2045
chr10	125244720	125245990	B_cells_Cheung.47663	0	.	125244720	125245990	0	1	1270	0
chr10	125245450	125245943	B_Cells_Pritchard.789027	0	.	125245450	125245943	0	1	493	0
chr10	125246065	125246838	B_cells_Cheung.47664	0	.	125246065	125246838	0	1	773	0
chr10	125249164	125249549	B_cells_Cheung.47668	0	.	125249164	125249549	0	1	385	0
chr10	125250823	125252046	B_Cells_Pritchard.789059	0	.	125250823	125252046	0	1	1223	0
chr10	125250855	125251963	B_cells_Cheung.47670	0	.	125250855	125251963	0	1	1108	0
chr10	125252491	125253289	B_cells_Cheung.47672	0	.	125252491	125253289	0	1	798	0
chr10	125260913	125261485	B_cells_Cheung.47679	0	.	125260913	125261485	0	1	572	0
chr10	125261546	125261898	B_Cells_Pritchard.789111	0	-	125261546	125261898	0	1	352	0
chr10	125261547	125261908	B_cells_Cheung.47680	0	.	125261547	125261908	0	1	361	0
chr10	125261958	125263103	B_cells_Cheung.47681	0	.	125261958	125263103	0	1	1145	0
chr10	125263780	125264181	B_cells_Cheung.47682	0	.	125263780	125264181	0	1	401	0
chr10	125264760	125265472	B_Cells_Pritchard.789125	0	.	125264760	125265472	0	1	712	0
chr10	125267381	125268099	B_cells_Cheung.47684	0	.	125267381	125268099	0	1	718	0
chr10	125267522	125268127	B_Cells_Pritchard.789135	0	.	125267522	125268127	0	1	605	0
chr10	125270189	125270573	B_Cells_Pritchard.789145	0	.	125270189	125270573	0	1	384	0
chr10	125270212	125270683	B_cells_Cheung.47687	0	.	125270212	125270683	0	1	471	0
chr10	125271412	125271947	B_Cells_Pritchard.789151	0	.	125271412	125271947	0	1	535	0
chr10	125273098	125274303	B_Cells_Pritchard.789155	0	.	125273098	125274303	0	1	1205	0
chr10	125274686	125277276	B_cells_Cheung.47508	0	.	125274686	125277276	0	1	2590	0
chr10	125274705	125276543	B_Cells_Pritchard.789157	0	.	125274705	125276543	0	1	1838	0
chr10	125278392	125279701	B_cells_Cheung.47510	0	.	125278392	125279701	0	1	1309	0
chr10	125278419	125281772	B_Cells_Pritchard.789169	0	-	125278419	125281772	0	2	1160,303	0,3050
chr10	125280839	125283573	B_cells_Cheung.47512	0	.	125280839	125283573	0	1	2734	0
chr10	125299976	125301626	B_cells_Cheung.47525	0	.	125299976	125301626	0	1	1650	0
chr10	125300482	125301602	B_Cells_Pritchard.789241	0	.	125300482	125301602	0	1	1120	0
chr10	125301870	125303739	B_cells_Cheung.47526	0	.	125301870	125303739	0	1	1869	0
chr10	125301872	125303153	B_Cells_Pritchard.789243	0	.	125301872	125303153	0	1	1281	0
chr10	125304487	125311792	B_cells_Cheung.47528	0	.	125304487	125311792	0	1	7305	0
chr10	125304710	125306419	H1_polyA+.27298	0	.	125304710	125306419	0	1	1709	0
chr10	125305340	125307655	B_Cells_Pritchard.789251	0	.	125305340	125307655	0	1	2315	0
chr10	125307790	125311068	B_Cells_Pritchard.789253	0	.	125307790	125311068	0	1	3278	0
chr10	125315286	125316457	B_cells_Cheung.47530	0	.	125315286	125316457	0	1	1171	0
chr10	125316706	125317719	B_cells_Cheung.47531	0	.	125316706	125317719	0	1	1013	0
chr10	125317827	125318672	B_cells_Cheung.47532	0	.	125317827	125318672	0	1	845	0
chr10	125318261	125318638	B_Cells_Pritchard.789289	0	.	125318261	125318638	0	1	377	0
chr10	125318734	125319474	B_cells_Cheung.47533	0	.	125318734	125319474	0	1	740	0
chr10	125319673	125320303	B_cells_Cheung.47534	0	.	125319673	125320303	0	1	630	0
chr10	125321494	125322095	B_cells_Cheung.47536	0	.	125321494	125322095	0	1	601	0
chr10	125322281	125322883	B_cells_Cheung.47537	0	.	125322281	125322883	0	1	602	0
chr10	125336550	125337463	B_cells_Cheung.47542	0	.	125336550	125337463	0	1	913	0
chr10	125338123	125338755	B_cells_Cheung.47544	0	.	125338123	125338755	0	1	632	0
chr10	125392408	125392712	B_cells_Cheung.47556	0	.	125392408	125392712	0	1	304	0
chr10	125452050	125452543	prostate_carcinoma.23443	0	.	125452050	125452543	0	1	493	0
chr10	125700905	125720306	H1_polyA+.27311	0	-	125700905	125720306	0	4	3161,101,253,180	0,10566,11795,19221
chr10	125700905	125704084	H1_polyA+.27312	0	.	125700905	125704084	0	1	3179	0
chr10	125701239	125704071	REMC_BreastStem.12630	0	.	125701239	125704071	0	1	2832	0
chr10	125703607	125704073	HepG2_Caltech_ENCODE.8733	0	.	125703607	125704073	0	1	466	0
chr10	125703747	125711548	REMC_LuminalBreast.24945	0	-	125703747	125711548	0	2	319,77	0,7724
chr10	125704020	125720236	H1_rRNA-depleted_UCSD_REMC.20694	0	-	125704020	125720236	0	4	46,101,113,110	0,7451,8680,16106
chr10	125711471	125721881	HepG2_Caltech_ENCODE.8735	0	-	125711471	125721881	0	3	679,7397,1010	0,1229,9400
chr10	125711471	125721881	HepG2_Caltech_ENCODE.8734	0	.	125711471	125721881	0	1	10410	0
chr10	125711804	125712800	prostate_carcinoma.23453	0	.	125711804	125712800	0	1	996	0
chr10	125712121	125712724	prostate_normal.13725	0	.	125712121	125712724	0	1	603	0
chr10	125720458	125721198	B_Cells_Pritchard.790457	0	.	125720458	125721198	0	1	740	0
chr10	125722029	125723907	REMC_MyoepithelialBreast.23085	0	.	125722029	125723907	0	1	1878	0
chr10	125722075	125723726	REMC_BreastStem.12645	0	.	125722075	125723726	0	1	1651	0
chr10	125722076	125725267	HepG2_Caltech_ENCODE.8736	0	.	125722076	125725267	0	1	3191	0
chr10	125730617	125731544	REMC_LuminalBreast.24949	0	.	125730617	125731544	0	1	927	0
chr10	125734595	125736745	HepG2_Caltech_ENCODE.8739	0	.	125734595	125736745	0	1	2150	0
chr10	125736290	125738089	REMC_LuminalBreast.24951	0	.	125736290	125738089	0	1	1799	0
chr10	125738292	125741063	REMC_LuminalBreast.24952	0	.	125738292	125741063	0	1	2771	0
chr10	125742797	125745544	REMC_MyoepithelialBreast.23095	0	.	125742797	125745544	0	1	2747	0
chr10	125742835	125746407	REMC_BreastStem.12654	0	-	125742835	125746407	0	2	1912,851	0,2721
chr10	125742857	125745246	H1_polyA+.27318	0	.	125742857	125745246	0	1	2389	0
chr10	125743046	125744180	REMC_LuminalBreast.24954	0	.	125743046	125744180	0	1	1134	0
chr10	125743049	125743908	prostate_carcinoma.23454	0	.	125743049	125743908	0	1	859	0
chr10	125744283	125749274	REMC_LuminalBreast.24955	0	-	125744283	125749274	0	2	464,3746	0,1245
chr10	125744768	125745539	REMC_BreastStem.12655	0	.	125744768	125745539	0	1	771	0
chr10	125745076	125745563	A549_Myers.17231	0	.	125745076	125745563	0	1	487	0
chr10	125745151	125745518	liver_polyA+.32793	0	.	125745151	125745518	0	1	367	0
chr10	125745287	125749274	REMC_LuminalBreast.24956	0	.	125745287	125749274	0	1	3987	0
chr10	125745355	125749233	H1_polyA+.27319	0	.	125745355	125749233	0	1	3878	0
chr10	125746496	125749273	REMC_BreastStem.12656	0	.	125746496	125749273	0	1	2777	0
chr10	125746590	125749275	REMC_MyoepithelialBreast.23097	0	-	125746590	125749275	0	2	123,1391	0,1294
chr10	125749385	125750934	REMC_BreastStem.12657	0	.	125749385	125750934	0	1	1549	0
chr10	125749393	125750893	REMC_MyoepithelialBreast.23099	0	.	125749393	125750893	0	1	1500	0
chr10	125749523	125750844	MCF10A_Thompson.5198	0	.	125749523	125750844	0	1	1321	0
chr10	125750226	125750855	prostate_normal.13729	0	.	125750226	125750855	0	1	629	0
chr10	125750302	125750884	prostate_carcinoma.23458	0	.	125750302	125750884	0	1	582	0
chr10	125751005	125753038	REMC_BreastStem.12658	0	.	125751005	125753038	0	1	2033	0
chr10	125751057	125752676	prostate_carcinoma.23459	0	.	125751057	125752676	0	1	1619	0
chr10	125751066	125753280	MCF10A_Thompson.5199	0	.	125751066	125753280	0	1	2214	0
chr10	125751542	125752365	MCF7_Burge_Thompson.6956	0	.	125751542	125752365	0	1	823	0
chr10	125751939	125752493	prostate_normal.13731	0	.	125751939	125752493	0	1	554	0
chr10	125843700	125844327	prostate_normal.13735	0	.	125843700	125844327	0	1	627	0
chr10	125845592	125846298	prostate_carcinoma.23472	0	.	125845592	125846298	0	1	706	0
chr10	125857146	125857533	A549_Myers.17244	0	.	125857146	125857533	0	1	387	0
chr10	125950593	126018853	pHIT000109620	0	+	125950593	126018853	0	4	46,178,115,120	0,36835,49377,68140
chr10	125950593	126042782	pHIT000109621	0	+	125950593	126042782	0	6	46,178,115,112,129,75	0,36835,49377,81259,91762,92114
chr10	125999666	125999973	A549_Myers.17248	0	.	125999666	125999973	0	1	307	0
chr10	126017751	126018098	A549_Myers.17249	0	.	126017751	126018098	0	1	347	0
chr10	126031541	126032411	B_Cells_Pritchard.791241	0	.	126031541	126032411	0	1	870	0
chr10	126042132	126042600	B_Cells_Pritchard.791273	0	.	126042132	126042600	0	1	468	0
chr10	126043621	126046671	H1_polyA+.27325	0	.	126043621	126046671	0	1	3050	0
chr10	126046816	126050315	H1_polyA+.27326	0	.	126046816	126050315	0	1	3499	0
chr10	126052134	126053665	H1_polyA+.27328	0	.	126052134	126053665	0	1	1531	0
chr10	126056147	126056501	A549_Myers.17250	0	.	126056147	126056501	0	1	354	0
chr10	126058420	126059051	B_Cells_Pritchard.791331	0	.	126058420	126059051	0	1	631	0
chr10	126067088	126067646	A549_Myers.17252	0	.	126067088	126067646	0	1	558	0
chr10	126113766	126115317	H1_polyA+.27337	0	.	126113766	126115317	0	1	1551	0
chr10	126119410	126120627	H1_polyA+.27339	0	.	126119410	126120627	0	1	1217	0
chr10	126543124	126543478	A549_Myers.17324	0	.	126543124	126543478	0	1	354	0
chr10	126581299	126582347	REMC_MyoepithelialBreast.23116	0	.	126581299	126582347	0	1	1048	0
chr10	126581621	126581996	A549_Myers.17327	0	.	126581621	126581996	0	1	375	0
chr10	126587633	126588362	K562.11055	0	.	126587633	126588362	0	1	729	0
chr10	126840746	126841477	brain_AmbionMAQC.10329	0	.	126840746	126841477	0	1	731	0
chr10	126910131	126910544	A549_Myers.17377	0	.	126910131	126910544	0	1	413	0
chr10	126910228	126912579	Rinn_00018380	0	+	126910228	126912579	0	2	320,212	0,2139
chr10	126941829	126942167	A549_Myers.17379	0	.	126941829	126942167	0	1	338	0
chr10	126961049	127010096	pHIT000109636	0	+	126961049	127010096	0	3	135,74,244	0,3733,48803
chr10	127251997	127252370	A549_Myers.17386	0	.	127251997	127252370	0	1	373	0
chr10	127367157	127367673	HeLa_polyA+_Chen.8364	0	.	127367157	127367673	0	1	516	0
chr10	127377347	127377793	A549_Myers.17392	0	.	127377347	127377793	0	1	446	0
chr10	127378994	127398019	eHIT000000019	0	-	127378994	127398019	0	5	147,149,359,70,39	0,6616,6965,9062,18986
chr10	127378994	127398019	ENST00000527483	0	-	127378994	127398019	0	5	147,149,359,70,39	0,6616,6965,9062,18986
chr10	127379007	127386278	brain_AmbionMAQC.10337	0	-	127379007	127386278	0	3	134,469,319	0,6283,6952
chr10	127383848	127398052	NR_033847	0	-	127383848	127398052	0	5	1911,359,70,115,72	0,2111,4208,6184,14132
chr10	127383900	127384981	BT474_Burge_Thompson.7288	0	.	127383900	127384981	0	1	1081	0
chr10	127384266	127384818	brain_AmbionMAQC.10341	0	.	127384266	127384818	0	1	552	0
chr10	127384369	127385475	B_cells_Cheung.47766	0	.	127384369	127385475	0	1	1106	0
chr10	127384382	127384788	prostate_normal.13813	0	.	127384382	127384788	0	1	406	0
chr10	127391977	127392338	prostate_carcinoma.23980	0	.	127391977	127392338	0	1	361	0
chr10	127396254	127398010	HIT000088599	0	-	127396254	127398010	0	1	1756	0
chr10	128072126	128075066	melanoma_Garraway_short_term_cultures.15906	0	.	128072126	128075066	0	1	2940	0
chr10	128077370	128083390	REMC_LuminalBreast.25159	0	.	128077370	128083390	0	1	6020	0
chr10	128080524	128082601	melanoma_Garraway_short_term_cultures.15911	0	.	128080524	128082601	0	1	2077	0
chr10	128081439	128082260	MeWo_Garraway.8215	0	.	128081439	128082260	0	1	821	0
chr10	128083448	128084730	REMC_LuminalBreast.25160	0	.	128083448	128084730	0	1	1282	0
chr10	128083633	128086823	melanoma_Garraway_short_term_cultures.15913	0	.	128083633	128086823	0	1	3190	0
chr10	128084625	128085038	MeWo_Garraway.8216	0	.	128084625	128085038	0	1	413	0
chr10	128097007	128099648	melanoma_Garraway_short_term_cultures.15917	0	.	128097007	128099648	0	1	2641	0
chr10	128350278	128350968	REMC_LuminalBreast.25191	0	.	128350278	128350968	0	1	690	0
chr10	128504684	128505106	A549_Myers.17480	0	.	128504684	128505106	0	1	422	0
chr10	128573577	128579606	H1_polyA+.27600	0	-	128573577	128579606	0	2	566,1015	0,5014
chr10	128574047	128579556	H9_polyA+.10746	0	-	128574047	128579556	0	2	96,965	0,4544
chr10	128577412	128579606	H1_polyA+.27601	0	.	128577412	128579606	0	1	2194	0
chr10	128578073	128579580	REMC_LuminalBreast.25192	0	.	128578073	128579580	0	1	1507	0
chr10	128578173	128579600	HepG2_Caltech_ENCODE.8625	0	.	128578173	128579600	0	1	1427	0
chr10	128578178	128579556	H9_polyA+.10745	0	.	128578178	128579556	0	1	1378	0
chr10	128578185	128579517	HeLa_polyA+_Chen.8378	0	.	128578185	128579517	0	1	1332	0
chr10	128578388	128579550	melanoma_Garraway_short_term_cultures.15939	0	.	128578388	128579550	0	1	1162	0
chr10	128578623	128579573	MIP101.16356	0	.	128578623	128579573	0	1	950	0
chr10	128578627	128579544	MCF7_Burge_Thompson.7006	0	.	128578627	128579544	0	1	917	0
chr10	128578628	128579558	prostate_normal.13837	0	.	128578628	128579558	0	1	930	0
chr10	128578640	128579520	T47D_Burge_Thompson.6531	0	.	128578640	128579520	0	1	880	0
chr10	128578683	128578987	A549_Myers.17483	0	.	128578683	128578987	0	1	304	0
chr10	128580125	128583032	prostate_normal.13839	0	-	128580125	128583032	0	2	81,1583	0,1324
chr10	128580128	128583465	NEC_from_H9.17492	0	-	128580128	128583465	0	2	78,2016	0,1321
chr10	128580140	128581086	MCF10A_Thompson.5217	0	.	128580140	128581086	0	1	946	0
chr10	128581465	128583400	Rinn_00018637	0	-	128581465	128583400	0	2	1536,283	0,1652
chr10	128581586	128582354	T47D_Burge_Thompson.6537	0	.	128581586	128582354	0	1	768	0
chr10	129188056	129189791	REMC_MyoepithelialBreast.23197	0	.	129188056	129189791	0	1	1735	0
chr10	129226772	129227319	ZR751_Thompson.5765	0	.	129226772	129227319	0	1	547	0
chr10	129226774	129227091	MCF7_Burge_Thompson.7036	0	.	129226774	129227091	0	1	317	0
chr10	129226775	129227081	B_Cells_Pritchard.799313	0	.	129226775	129227081	0	1	306	0
chr10	129357700	129359139	REMC_MyoepithelialBreast.23223	0	.	129357700	129359139	0	1	1439	0
chr10	129369494	129371134	REMC_MyoepithelialBreast.23226	0	.	129369494	129371134	0	1	1640	0
chr10	129389381	129392188	REMC_MyoepithelialBreast.23236	0	.	129389381	129392188	0	1	2807	0
chr10	129408382	129411419	REMC_MyoepithelialBreast.23242	0	.	129408382	129411419	0	1	3037	0
chr10	129412761	129414975	REMC_MyoepithelialBreast.23243	0	.	129412761	129414975	0	1	2214	0
chr10	129420909	129422218	REMC_MyoepithelialBreast.23245	0	.	129420909	129422218	0	1	1309	0
chr10	129838133	129838727	A549_Myers.17544	0	.	129838133	129838727	0	1	594	0
chr10	129841417	129841925	B_Cells_Pritchard.800633	0	.	129841417	129841925	0	1	508	0
chr10	129898532	129899013	A549_Myers.17546	0	.	129898532	129899013	0	1	481	0
chr10	129899075	129899701	A549_Myers.17547	0	.	129899075	129899701	0	1	626	0
chr10	129900107	129900650	A549_Myers.17548	0	.	129900107	129900650	0	1	543	0
chr10	130310198	130310823	prostate_carcinoma.23821	0	.	130310198	130310823	0	1	625	0
chr10	130311054	130315720	prostate_carcinoma.23822	0	.	130311054	130315720	0	1	4666	0
chr10	130312406	130313854	prostate_normal.13920	0	.	130312406	130313854	0	1	1448	0
chr10	130315987	130321495	prostate_carcinoma.23823	0	.	130315987	130321495	0	1	5508	0
chr10	130330356	130347935	prostate_normal.13922	0	+	130330356	130347935	0	2	8,3885	0,13694
chr10	130343699	130349560	prostate_carcinoma.23829	0	.	130343699	130349560	0	1	5861	0
chr10	130349636	130350808	prostate_carcinoma.23830	0	.	130349636	130350808	0	1	1172	0
chr10	130361386	130362635	prostate_carcinoma.23834	0	.	130361386	130362635	0	1	1249	0
chr10	130363663	130376749	prostate_carcinoma.23836	0	-	130363663	130376749	0	2	135,3093	0,9993
chr10	130366430	130370301	prostate_carcinoma.23838	0	.	130366430	130370301	0	1	3871	0
chr10	130366589	130367043	prostate_normal.13926	0	.	130366589	130367043	0	1	454	0
chr10	130373582	130376664	prostate_normal.13929	0	.	130373582	130376664	0	1	3082	0
chr10	130373711	130379645	prostate_normal.13930	0	-	130373711	130379645	0	3	1520,200,142	0,3390,5792
chr10	130377142	130379695	prostate_carcinoma.23841	0	-	130377142	130379695	0	2	159,192	0,2361
chr10	130601132	130604525	ENST00000446589	0	+	130601132	130604525	0	5	39,33,138,165,75	0,1494,1880,2122,3318
chr10	130603227	130603628	A549_Myers.17552	0	.	130603227	130603628	0	1	401	0
chr10	130723643	130724933	Rinn_00018641	0	-	130723643	130724933	0	2	1067,35	0,1255
chr10	130723645	130725022	CD4_Snyder.18724	0	.	130723645	130725022	0	1	1377	0
chr10	130745003	130745448	A549_Myers.17553	0	.	130745003	130745448	0	1	445	0
chr10	130833248	130833811	B_Cells_Pritchard.802913	0	.	130833248	130833811	0	1	563	0
chr10	130929999	130931089	prostate_carcinoma.23844	0	.	130929999	130931089	0	1	1090	0
chr10	130995192	131063930	pHIT000109668	0	-	130995192	131063930	0	3	131,75,316	0,16100,68422
chr10	131054486	131056744	Rinn_00018385	0	+	131054486	131056744	0	2	135,783	0,1475
chr10	131066935	131069044	Rinn_00019053	0	-	131066935	131069044	0	2	291,149	0,1960
chr10	131456911	131457372	A549_Myers.17563	0	.	131456911	131457372	0	1	461	0
chr10	131457097	131457689	ENST00000428273	0	+	131457097	131457689	0	2	234,261	0,331
chr10	131457140	131458978	prostate_normal.13939	0	.	131457140	131458978	0	1	1838	0
chr10	131457638	131459109	B_cells_Cheung.47873	0	.	131457638	131459109	0	1	1471	0
chr10	131458331	131459599	HepG2_Caltech_ENCODE.8667	0	.	131458331	131459599	0	1	1268	0
chr10	131459782	131461505	HepG2_Caltech_ENCODE.8668	0	.	131459782	131461505	0	1	1723	0
chr10	131459840	131461462	prostate_carcinoma.23854	0	.	131459840	131461462	0	1	1622	0
chr10	131460978	131461554	REMC_LuminalBreast.25299	0	.	131460978	131461554	0	1	576	0
chr10	131461767	131462933	MIP101.16483	0	.	131461767	131462933	0	1	1166	0
chr10	131461780	131463259	prostate_carcinoma.23855	0	.	131461780	131463259	0	1	1479	0
chr10	131461782	131462652	H1_polyA+.27566	0	.	131461782	131462652	0	1	870	0
chr10	131462345	131463535	HepG2_Caltech_ENCODE.8670	0	.	131462345	131463535	0	1	1190	0
chr10	131462617	131463248	HeLa_polyA+_Chen.8402	0	.	131462617	131463248	0	1	631	0
chr10	131465135	131468151	MIP101.16485	0	.	131465135	131468151	0	1	3016	0
chr10	131465489	131468175	prostate_carcinoma.23857	0	.	131465489	131468175	0	1	2686	0
chr10	131466257	131467710	REMC_LuminalBreast.25301	0	.	131466257	131467710	0	1	1453	0
chr10	131466513	131468174	H1_polyA+.27568	0	.	131466513	131468174	0	1	1661	0
chr10	131467716	131468346	HepG2_Caltech_ENCODE.8672	0	.	131467716	131468346	0	1	630	0
chr10	131467812	131468230	REMC_LuminalBreast.25302	0	.	131467812	131468230	0	1	418	0
chr10	131468417	131468778	B_Cells_Pritchard.804793	0	.	131468417	131468778	0	1	361	0
chr10	131468455	131470555	HepG2_Caltech_ENCODE.8673	0	.	131468455	131470555	0	1	2100	0
chr10	131468455	131470830	H1_polyA+.27569	0	.	131468455	131470830	0	1	2375	0
chr10	131468463	131469641	HIT000435134	0	-	131468463	131469641	0	1	1178	0
chr10	131468463	131469162	prostate_carcinoma.23858	0	.	131468463	131469162	0	1	699	0
chr10	131468470	131468781	B_cells_Cheung.47875	0	.	131468470	131468781	0	1	311	0
chr10	131468488	131470662	MIP101.16486	0	.	131468488	131470662	0	1	2174	0
chr10	131468610	131470817	REMC_LuminalBreast.25303	0	.	131468610	131470817	0	1	2207	0
chr10	131468856	131470152	prostate_normal.13938	0	.	131468856	131470152	0	1	1296	0
chr10	131469198	131470167	B_Cells_Pritchard.804797	0	.	131469198	131470167	0	1	969	0
chr10	131469216	131470678	prostate_carcinoma.23859	0	.	131469216	131470678	0	1	1462	0
chr10	131471119	131471450	kidney_Gilad.21112	0	.	131471119	131471450	0	1	331	0
chr10	131471906	131473856	REMC_LuminalBreast.25306	0	.	131471906	131473856	0	1	1950	0
chr10	131472051	131473716	HepG2_Caltech_ENCODE.8676	0	.	131472051	131473716	0	1	1665	0
chr10	131472051	131484239	HepG2_Caltech_ENCODE.8675	0	-	131472051	131484239	0	2	1457,69	0,12119
chr10	131472071	131474853	prostate_normal.13941	0	.	131472071	131474853	0	1	2782	0
chr10	131472072	131474767	prostate_carcinoma.23862	0	.	131472072	131474767	0	1	2695	0
chr10	131472073	131473568	H1_polyA+.27571	0	.	131472073	131473568	0	1	1495	0
chr10	131472075	131473500	MIP101.16488	0	.	131472075	131473500	0	1	1425	0
chr10	131472527	131473929	B_cells_Cheung.47880	0	.	131472527	131473929	0	1	1402	0
chr10	131472568	131476103	B_Cells_Pritchard.804805	0	.	131472568	131476103	0	1	3535	0
chr10	131473616	131474844	liver_polyA+.33212	0	.	131473616	131474844	0	1	1228	0
chr10	131474039	131474830	B_cells_Cheung.47881	0	.	131474039	131474830	0	1	791	0
chr10	131474128	131477423	REMC_LuminalBreast.25307	0	.	131474128	131477423	0	1	3295	0
chr10	131474128	131481755	REMC_LuminalBreast.25309	0	+	131474128	131481755	0	2	1938,4073	0,3554
chr10	131474162	131474844	kidney_Gilad.21115	0	.	131474162	131474844	0	1	682	0
chr10	131474457	131476180	H1_polyA+.27572	0	.	131474457	131476180	0	1	1723	0
chr10	131474919	131476154	B_cells_Cheung.47882	0	.	131474919	131476154	0	1	1235	0
chr10	131475048	131477295	prostate_carcinoma.23860	0	.	131475048	131477295	0	1	2247	0
chr10	131475048	131477295	MIP101.16489	0	.	131475048	131477295	0	1	2247	0
chr10	131475094	131476081	liver_polyA+.33216	0	.	131475094	131476081	0	1	987	0
chr10	131475636	131477545	HIT000004706	0	+	131475636	131477545	0	1	1909	0
chr10	131476616	131477320	B_cells_Cheung.47883	0	.	131476616	131477320	0	1	704	0
chr10	131477585	131481755	REMC_LuminalBreast.25308	0	.	131477585	131481755	0	1	4170	0
chr10	131477810	131480051	H1_polyA+.27574	0	.	131477810	131480051	0	1	2241	0
chr10	131478536	131480494	MIP101.16491	0	.	131478536	131480494	0	1	1958	0
chr10	131478539	131479986	B_Cells_Pritchard.804811	0	.	131478539	131479986	0	1	1447	0
chr10	131479312	131480100	prostate_carcinoma.23866	0	.	131479312	131480100	0	1	788	0
chr10	131480022	131481588	melanoma_Garraway_short_term_cultures.15980	0	.	131480022	131481588	0	1	1566	0
chr10	131480215	131488494	HepG2_Caltech_ENCODE.8677	0	+	131480215	131488494	0	2	73,575	0,7704
chr10	131480257	131482109	H1_polyA+.27575	0	.	131480257	131482109	0	1	1852	0
chr10	131480549	131482865	MIP101.16492	0	.	131480549	131482865	0	1	2316	0
chr10	131480580	131481475	REMC_MyoepithelialBreast.23415	0	.	131480580	131481475	0	1	895	0
chr10	131480783	131481485	HeLa_polyA+_Chen.8404	0	.	131480783	131481485	0	1	702	0
chr10	131480791	131483878	B_Cells_Pritchard.804815	0	.	131480791	131483878	0	1	3087	0
chr10	131480835	131481495	B_cells_Cheung.47888	0	.	131480835	131481495	0	1	660	0
chr10	131480986	131484089	prostate_carcinoma.23868	0	.	131480986	131484089	0	1	3103	0
chr10	131481009	131481389	MCF7_Burge_Thompson.7056	0	.	131481009	131481389	0	1	380	0
chr10	131481076	131481412	prostate_normal.13934	0	.	131481076	131481412	0	1	336	0
chr10	131481097	131481810	liver_polyA+.33226	0	.	131481097	131481810	0	1	713	0
chr10	131481818	131484632	REMC_LuminalBreast.25310	0	.	131481818	131484632	0	1	2814	0
chr10	131482018	131484171	HIT000005366	0	-	131482018	131484171	0	1	2153	0
chr10	131482839	131483716	liver_polyA+.33227	0	.	131482839	131483716	0	1	877	0
chr10	131485399	131489810	REMC_LuminalBreast.25311	0	.	131485399	131489810	0	1	4411	0
chr10	131486706	131488638	MIP101.16495	0	.	131486706	131488638	0	1	1932	0
chr10	131487726	131488702	prostate_carcinoma.23871	0	.	131487726	131488702	0	1	976	0
chr10	131487917	131488519	prostate_normal.13935	0	.	131487917	131488519	0	1	602	0
chr10	131488721	131489708	H1_polyA+.27580	0	.	131488721	131489708	0	1	987	0
chr10	131488752	131490140	MIP101.16496	0	.	131488752	131490140	0	1	1388	0
chr10	131488804	131493926	prostate_carcinoma.23872	0	+	131488804	131493926	0	2	2341,332	0,4790
chr10	131488867	131489655	prostate_normal.13936	0	.	131488867	131489655	0	1	788	0
chr10	131489066	131489534	liver_polyA+.33229	0	.	131489066	131489534	0	1	468	0
chr10	131489727	131490585	HepG2_Caltech_ENCODE.8678	0	.	131489727	131490585	0	1	858	0
chr10	131489811	131491294	H1_polyA+.27582	0	.	131489811	131491294	0	1	1483	0
chr10	131489811	131493646	H1_polyA+.27581	0	+	131489811	131493646	0	2	1334,52	0,3783
chr10	131490269	131490834	REMC_LuminalBreast.25312	0	.	131490269	131490834	0	1	565	0
chr10	131490300	131491384	MIP101.16497	0	.	131490300	131491384	0	1	1084	0
chr10	131493499	131494890	MIP101.16498	0	.	131493499	131494890	0	1	1391	0
chr10	131494639	131495591	REMC_LuminalBreast.25314	0	.	131494639	131495591	0	1	952	0
chr10	131516790	131519876	REMC_LuminalBreast.25317	0	.	131516790	131519876	0	1	3086	0
chr10	131516791	131518178	prostate_carcinoma.23875	0	.	131516791	131518178	0	1	1387	0
chr10	131518876	131519954	H1_polyA+.27583	0	.	131518876	131519954	0	1	1078	0
chr10	131520804	131521268	HepG2_Caltech_ENCODE.8682	0	.	131520804	131521268	0	1	464	0
chr10	131520986	131521373	liver_polyA+.33232	0	.	131520986	131521373	0	1	387	0
chr10	131521044	131522098	REMC_LuminalBreast.25318	0	.	131521044	131522098	0	1	1054	0
chr10	131653273	131657340	pHIT000083277	0	+	131653273	131657340	0	2	249,107	0,3960
chr10	131653273	131726421	pHIT000109671	0	+	131653273	131726421	0	4	249,51,30,30	0,71764,72506,73118
chr10	131653333	131653748	A549_Myers.17568	0	.	131653333	131653748	0	1	415	0
chr10	131660680	131661110	A549_Myers.17570	0	.	131660680	131661110	0	1	430	0
chr10	131713942	131714688	prostate_carcinoma.23888	0	.	131713942	131714688	0	1	746	0
chr10	131724797	131725725	prostate_carcinoma.23889	0	.	131724797	131725725	0	1	928	0
chr10	131750990	131752646	MIP101.16504	0	.	131750990	131752646	0	1	1656	0
chr10	131752185	131752491	adipose_Burge.8907	0	.	131752185	131752491	0	1	306	0
chr10	131752969	131754436	prostate_carcinoma.23894	0	.	131752969	131754436	0	1	1467	0
chr10	131753013	131753896	prostate_normal.13961	0	.	131753013	131753896	0	1	883	0
chr10	131754708	131756608	prostate_carcinoma.23895	0	.	131754708	131756608	0	1	1900	0
chr10	131755127	131756505	prostate_normal.13963	0	.	131755127	131756505	0	1	1378	0
chr10	131755256	131756314	CD4_Plagnol_activated.15267	0	.	131755256	131756314	0	1	1058	0
chr10	131792183	131793744	B_cells_Cheung.47897	0	.	131792183	131793744	0	1	1561	0
chr10	131792325	131793350	prostate_carcinoma.23900	0	.	131792325	131793350	0	1	1025	0
chr10	131792619	131793759	REMC_MyoepithelialBreast.23425	0	.	131792619	131793759	0	1	1140	0
chr10	131792831	131793724	HepG2_Caltech_ENCODE.8685	0	.	131792831	131793724	0	1	893	0
chr10	131792852	131793652	MCF7_Burge_Thompson.7060	0	.	131792852	131793652	0	1	800	0
chr10	131792956	131793710	H9_polyA+.10783	0	.	131792956	131793710	0	1	754	0
chr10	131797085	131797646	HepG2_Caltech_ENCODE.8690	0	.	131797085	131797646	0	1	561	0
chr10	131797101	131798870	prostate_carcinoma.23901	0	.	131797101	131798870	0	1	1769	0
chr10	131797105	131797739	prostate_normal.13969	0	.	131797105	131797739	0	1	634	0
chr10	131797124	131798006	HeLa_polyA+_Chen.8425	0	.	131797124	131798006	0	1	882	0
chr10	131797127	131797565	A549_Myers.17573	0	.	131797127	131797565	0	1	438	0
chr10	131797167	131797621	MCF7_Burge_Thompson.7061	0	.	131797167	131797621	0	1	454	0
chr10	131797253	131797796	CD4_Plagnol_resting.14892	0	.	131797253	131797796	0	1	543	0
chr10	131797874	131799247	A549_Myers.17575	0	.	131797874	131799247	0	1	1373	0
chr10	131797925	131798736	CD4_Plagnol_activated.15269	0	.	131797925	131798736	0	1	811	0
chr10	131798035	131799371	REMC_MyoepithelialBreast.23427	0	.	131798035	131799371	0	1	1336	0
chr10	131798086	131799066	MCF7_Burge_Thompson.7062	0	.	131798086	131799066	0	1	980	0
chr10	131798195	131799076	prostate_normal.13965	0	.	131798195	131799076	0	1	881	0
chr10	131798333	131799016	K562.11156	0	.	131798333	131799016	0	1	683	0
chr10	131798464	131799108	CD4_Snyder.18732	0	.	131798464	131799108	0	1	644	0
chr10	131799408	131800059	A549_Myers.17576	0	.	131799408	131800059	0	1	651	0
chr10	131799418	131800571	HepG2_Caltech_ENCODE.8691	0	.	131799418	131800571	0	1	1153	0
chr10	131799457	131802914	B_cells_Cheung.47904	0	.	131799457	131802914	0	1	3457	0
chr10	131799474	131801306	prostate_carcinoma.23909	0	.	131799474	131801306	0	1	1832	0
chr10	131799521	131802899	H1_polyA+.27596	0	.	131799521	131802899	0	1	3378	0
chr10	131799522	131800858	MIP101.16515	0	.	131799522	131800858	0	1	1336	0
chr10	131799545	131808877	prostate_normal.13955	0	+	131799545	131808877	0	2	825,558	0,8774
chr10	131799545	131800748	prostate_normal.13953	0	.	131799545	131800748	0	1	1203	0
chr10	131799562	131800312	brain_AmbionMAQC.10394	0	.	131799562	131800312	0	1	750	0
chr10	131803095	131804479	B_cells_Cheung.47906	0	.	131803095	131804479	0	1	1384	0
chr10	131803149	131804981	H1_polyA+.27597	0	.	131803149	131804981	0	1	1832	0
chr10	131803873	131804387	prostate_carcinoma.23912	0	.	131803873	131804387	0	1	514	0
chr10	131803880	131804312	CD4_Plagnol_activated.15270	0	.	131803880	131804312	0	1	432	0
chr10	131804026	131804382	CD4_Plagnol_resting.14895	0	.	131804026	131804382	0	1	356	0
chr10	131807369	131810670	B_cells_Cheung.47905	0	.	131807369	131810670	0	1	3301	0
chr10	131807416	131810757	B_Cells_Pritchard.805769	0	.	131807416	131810757	0	1	3341	0
chr10	131808147	131809873	H1_polyA+.27598	0	.	131808147	131809873	0	1	1726	0
chr10	131809186	131809916	prostate_normal.13956	0	.	131809186	131809916	0	1	730	0
chr10	131813460	131814493	REMC_LuminalBreast.25329	0	.	131813460	131814493	0	1	1033	0
chr10	131813606	131814291	B_cells_Cheung.47912	0	.	131813606	131814291	0	1	685	0
chr10	131813689	131814449	B_Cells_Pritchard.805783	0	.	131813689	131814449	0	1	760	0
chr10	131817525	131818846	REMC_LuminalBreast.25330	0	.	131817525	131818846	0	1	1321	0
chr10	131822951	131823427	prostate_normal.13957	0	.	131822951	131823427	0	1	476	0
chr10	131874534	131877437	REMC_LuminalBreast.25505	0	.	131874534	131877437	0	1	2903	0
chr10	131874628	131877427	REMC_MyoepithelialBreast.23774	0	.	131874628	131877427	0	1	2799	0
chr10	131874643	131877182	B_cells_Cheung.47945	0	.	131874643	131877182	0	1	2539	0
chr10	131874678	131889032	MIP101.16525	0	+	131874678	131889032	0	2	313,675	0,13679
chr10	131875515	131876699	H1_polyA+.27735	0	.	131875515	131876699	0	1	1184	0
chr10	131875649	131877203	B_Cells_Pritchard.805881	0	.	131875649	131877203	0	1	1554	0
chr10	131875718	131876563	A549_Myers.17588	0	.	131875718	131876563	0	1	845	0
chr10	131876423	131877308	prostate_normal.13984	0	.	131876423	131877308	0	1	885	0
chr10	131876467	131877392	REMC_BreastStem.12821	0	.	131876467	131877392	0	1	925	0
chr10	131877538	131878821	REMC_LuminalBreast.25506	0	.	131877538	131878821	0	1	1283	0
chr10	131877615	131878194	REMC_MyoepithelialBreast.23775	0	.	131877615	131878194	0	1	579	0
chr10	131877676	131880073	MIP101.16526	0	.	131877676	131880073	0	1	2397	0
chr10	131877688	131878360	B_cells_Cheung.47946	0	.	131877688	131878360	0	1	672	0
chr10	131877939	131878957	A549_Myers.17589	0	.	131877939	131878957	0	1	1018	0
chr10	131878032	131879699	prostate_carcinoma.23933	0	.	131878032	131879699	0	1	1667	0
chr10	131878140	131892651	B_Cells_Pritchard.805889	0	+	131878140	131892651	0	2	8,1610	0,12901
chr10	131878353	131882157	REMC_MyoepithelialBreast.23776	0	.	131878353	131882157	0	1	3804	0
chr10	131878948	131882079	REMC_LuminalBreast.25507	0	.	131878948	131882079	0	1	3131	0
chr10	131879113	131880049	B_Cells_Pritchard.805901	0	-	131879113	131880049	0	1	936	0
chr10	131879523	131885792	prostate_carcinoma.23935	0	+	131879523	131885792	0	2	576,3252	0,3017
chr10	131880302	131881012	prostate_normal.13986	0	.	131880302	131881012	0	1	710	0
chr10	131880664	131881594	B_cells_Cheung.47949	0	.	131880664	131881594	0	1	930	0
chr10	131880681	131881036	B_Cells_Pritchard.805913	0	-	131880681	131881036	0	1	355	0
chr10	131880796	131882169	MIP101.16527	0	.	131880796	131882169	0	1	1373	0
chr10	131881122	131881845	prostate_carcinoma.23936	0	.	131881122	131881845	0	1	723	0
chr10	131881144	131885740	prostate_normal.13987	0	.	131881144	131885740	0	1	4596	0
chr10	131881916	131882737	prostate_carcinoma.23934	0	.	131881916	131882737	0	1	821	0
chr10	131882243	131882950	B_cells_Cheung.47950	0	.	131882243	131882950	0	1	707	0
chr10	131882282	131884709	REMC_LuminalBreast.25508	0	.	131882282	131884709	0	1	2427	0
chr10	131882676	131885662	REMC_MyoepithelialBreast.23777	0	.	131882676	131885662	0	1	2986	0
chr10	131882828	131883389	B_Cells_Pritchard.805937	0	-	131882828	131883389	0	1	561	0
chr10	131882867	131885668	MIP101.16524	0	.	131882867	131885668	0	1	2801	0
chr10	131883013	131883387	B_cells_Cheung.47951	0	.	131883013	131883387	0	1	374	0
chr10	131883085	131891742	pHIT000082782	0	+	131883085	131891742	0	3	86,131,536	0,265,8121
chr10	131883807	131884735	H1_polyA+.27736	0	.	131883807	131884735	0	1	928	0
chr10	131884272	131884791	HeLa_polyA+_Chen.8438	0	.	131884272	131884791	0	1	519	0
chr10	131884279	131884897	MCF7_Burge_Thompson.7074	0	.	131884279	131884897	0	1	618	0
chr10	131884295	131884725	B_cells_Cheung.47952	0	.	131884295	131884725	0	1	430	0
chr10	131884401	131884798	B_Cells_Pritchard.805961	0	+	131884401	131884798	0	1	397	0
chr10	131884442	131885162	H9_polyA+.10798	0	.	131884442	131885162	0	1	720	0
chr10	131884779	131886055	B_cells_Cheung.47953	0	.	131884779	131886055	0	1	1276	0
chr10	131884826	131885829	REMC_LuminalBreast.25509	0	.	131884826	131885829	0	1	1003	0
chr10	131884948	131885259	A549_Myers.17590	0	.	131884948	131885259	0	1	311	0
chr10	131885353	131885958	CD4_Plagnol_activated.15288	0	.	131885353	131885958	0	1	605	0
chr10	131885359	131885834	B_Cells_Pritchard.805973	0	-	131885359	131885834	0	1	475	0
chr10	131885426	131885922	CD4_Plagnol_resting.14920	0	.	131885426	131885922	0	1	496	0
chr10	131886184	131886688	MIP101.16528	0	.	131886184	131886688	0	1	504	0
chr10	131886215	131891974	prostate_carcinoma.23937	0	-	131886215	131891974	0	2	348,549	0,5210
chr10	131886226	131889978	REMC_LuminalBreast.25510	0	.	131886226	131889978	0	1	3752	0
chr10	131886239	131886694	B_cells_Cheung.47954	0	.	131886239	131886694	0	1	455	0
chr10	131887750	131889276	prostate_normal.13989	0	.	131887750	131889276	0	1	1526	0
chr10	131887839	131888933	prostate_carcinoma.23941	0	.	131887839	131888933	0	1	1094	0
chr10	131887842	131890092	B_cells_Cheung.47956	0	.	131887842	131890092	0	1	2250	0
chr10	131887847	131888878	CD4_Plagnol_activated.15289	0	.	131887847	131888878	0	1	1031	0
chr10	131887863	131889997	REMC_MyoepithelialBreast.23778	0	.	131887863	131889997	0	1	2134	0
chr10	131888628	131889978	CD4_Plagnol_resting.14921	0	.	131888628	131889978	0	1	1350	0
chr10	131888754	131889159	BT474_Burge_Thompson.7335	0	.	131888754	131889159	0	1	405	0
chr10	131888999	131890056	prostate_carcinoma.23942	0	.	131888999	131890056	0	1	1057	0
chr10	131889032	131889623	MIP101.16530	0	.	131889032	131889623	0	1	591	0
chr10	131889094	131890072	CD4_Plagnol_activated.15290	0	.	131889094	131890072	0	1	978	0
chr10	131889232	131889758	liver_polyA+.33263	0	.	131889232	131889758	0	1	526	0
chr10	131889273	131889903	brain_AmbionMAQC.10409	0	.	131889273	131889903	0	1	630	0
chr10	131890354	131892003	REMC_LuminalBreast.25490	0	.	131890354	131892003	0	1	1649	0
chr10	131891077	131892486	B_Cells_Pritchard.805887	0	-	131891077	131892486	0	3	437,534,287	0,516,1122
chr10	131891080	131891974	prostate_carcinoma.23938	0	.	131891080	131891974	0	1	894	0
chr10	131891086	131891808	H1_polyA+.27712	0	.	131891086	131891808	0	1	722	0
chr10	131891175	131891828	B_cells_Cheung.47957	0	.	131891175	131891828	0	1	653	0
chr10	131891176	131891498	prostate_normal.13971	0	.	131891176	131891498	0	1	322	0
chr10	131891176	131891887	prostate_normal.13972	0	+	131891176	131891887	0	2	174,362	0,349
chr10	131891186	131891601	A549_Myers.17592	0	.	131891186	131891601	0	1	415	0
chr10	131891270	131891958	REMC_MyoepithelialBreast.23779	0	.	131891270	131891958	0	1	688	0
chr10	131892040	131892581	prostate_normal.13973	0	.	131892040	131892581	0	1	541	0
chr10	131892104	131893229	MIP101.16532	0	.	131892104	131893229	0	1	1125	0
chr10	131892114	131892615	CD4_Plagnol_activated.15291	0	.	131892114	131892615	0	1	501	0
chr10	131893338	131902272	MIP101.16533	0	.	131893338	131902272	0	1	8934	0
chr10	131894069	131895330	REMC_LuminalBreast.25491	0	.	131894069	131895330	0	1	1261	0
chr10	131895247	131896919	prostate_carcinoma.23945	0	.	131895247	131896919	0	1	1672	0
chr10	131895369	131896409	prostate_normal.13974	0	.	131895369	131896409	0	1	1040	0
chr10	131898116	131900494	REMC_MyoepithelialBreast.23577	0	.	131898116	131900494	0	1	2378	0
chr10	131901010	131904426	Rinn_00018386	0	+	131901010	131904426	0	2	1273,192	0,3224
chr10	131901326	131902053	REMC_MyoepithelialBreast.23578	0	.	131901326	131902053	0	1	727	0
chr10	131901622	131902318	B_Cells_Pritchard.806129	0	+	131901622	131902318	0	1	696	0
chr10	131902139	131927798	REMC_MyoepithelialBreast.23579	0	+	131902139	131927798	0	2	144,5108	0,20551
chr10	131902379	131904847	MIP101.16534	0	.	131902379	131904847	0	1	2468	0
chr10	131903770	131904075	A549_Myers.17594	0	.	131903770	131904075	0	1	305	0
chr10	131908330	131910319	MIP101.16536	0	.	131908330	131910319	0	1	1989	0
chr10	131908882	131909308	B_Cells_Pritchard.806159	0	.	131908882	131909308	0	1	426	0
chr10	131912203	131913336	MIP101.16538	0	.	131912203	131913336	0	1	1133	0
chr10	131912246	131912943	REMC_MyoepithelialBreast.23584	0	.	131912246	131912943	0	1	697	0
chr10	131913808	131918061	MIP101.16539	0	.	131913808	131918061	0	1	4253	0
chr10	131913838	131914444	REMC_MyoepithelialBreast.23585	0	.	131913838	131914444	0	1	606	0
chr10	131914532	131915119	prostate_carcinoma.23947	0	.	131914532	131915119	0	1	587	0
chr10	131915255	131916611	REMC_MyoepithelialBreast.23586	0	.	131915255	131916611	0	1	1356	0
chr10	131915319	131916042	prostate_carcinoma.23948	0	.	131915319	131916042	0	1	723	0
chr10	131918185	131929627	MIP101.16540	0	.	131918185	131929627	0	1	11442	0
chr10	131920874	131922196	prostate_carcinoma.23951	0	.	131920874	131922196	0	1	1322	0
chr10	131921524	131922943	REMC_LuminalBreast.25494	0	.	131921524	131922943	0	1	1419	0
chr10	131922047	131923295	prostate_normal.13975	0	.	131922047	131923295	0	1	1248	0
chr10	131922166	131927798	REMC_MyoepithelialBreast.23580	0	.	131922166	131927798	0	1	5632	0
chr10	131922406	131924224	prostate_carcinoma.23952	0	.	131922406	131924224	0	1	1818	0
chr10	131922581	131923216	B_Cells_Pritchard.806219	0	.	131922581	131923216	0	1	635	0
chr10	131923317	131924215	REMC_LuminalBreast.25495	0	.	131923317	131924215	0	1	898	0
chr10	131924310	131925462	REMC_LuminalBreast.25496	0	.	131924310	131925462	0	1	1152	0
chr10	131924434	131925468	prostate_carcinoma.23953	0	.	131924434	131925468	0	1	1034	0
chr10	131930063	131933889	MIP101.16542	0	.	131930063	131933889	0	1	3826	0
chr10	131931708	131933099	REMC_MyoepithelialBreast.23590	0	.	131931708	131933099	0	1	1391	0
chr10	131937290	131942801	MIP101.16541	0	.	131937290	131942801	0	1	5511	0
chr10	131939822	131941328	prostate_carcinoma.23954	0	.	131939822	131941328	0	1	1506	0
chr10	131943905	131946211	MIP101.16544	0	.	131943905	131946211	0	1	2306	0
chr10	131949087	131952591	REMC_MyoepithelialBreast.23596	0	.	131949087	131952591	0	1	3504	0
chr10	131949969	131950959	MIP101.16547	0	.	131949969	131950959	0	1	990	0
chr10	131952692	131953424	REMC_MyoepithelialBreast.23597	0	.	131952692	131953424	0	1	732	0
chr10	131953286	131954990	MIP101.16549	0	.	131953286	131954990	0	1	1704	0
chr10	131963702	131964781	REMC_MyoepithelialBreast.23601	0	.	131963702	131964781	0	1	1079	0
chr10	131968205	131972104	MIP101.16556	0	.	131968205	131972104	0	1	3899	0
chr10	131969390	131972299	REMC_MyoepithelialBreast.23605	0	.	131969390	131972299	0	1	2909	0
chr10	131977061	131979317	REMC_MyoepithelialBreast.23607	0	.	131977061	131979317	0	1	2256	0
chr10	131979551	131980973	REMC_MyoepithelialBreast.23608	0	.	131979551	131980973	0	1	1422	0
chr10	131984733	131985853	REMC_MyoepithelialBreast.23610	0	.	131984733	131985853	0	1	1120	0
chr10	131988004	131989394	MIP101.16560	0	.	131988004	131989394	0	1	1390	0
chr10	131988004	131993801	MIP101.16562	0	-	131988004	131993801	0	2	1373,2190	0,3607
chr10	131989144	131989580	B_Cells_Pritchard.806421	0	.	131989144	131989580	0	1	436	0
chr10	131992328	132026945	REMC_MyoepithelialBreast.23615	0	+	131992328	132026945	0	4	397,474,170,1503	0,30359,32679,33114
chr10	132022972	132023883	prostate_carcinoma.23960	0	.	132022972	132023883	0	1	911	0
chr10	132024120	132027749	prostate_carcinoma.23961	0	.	132024120	132027749	0	1	3629	0
chr10	132024137	132026945	REMC_MyoepithelialBreast.23614	0	.	132024137	132026945	0	1	2808	0
chr10	132024857	132027852	MIP101.16564	0	.	132024857	132027852	0	1	2995	0
chr10	132025171	132025970	prostate_normal.13992	0	.	132025171	132025970	0	1	799	0
chr10	132027165	132028047	REMC_MyoepithelialBreast.23620	0	.	132027165	132028047	0	1	882	0
chr10	132072264	132073001	REMC_MyoepithelialBreast.23625	0	.	132072264	132073001	0	1	737	0
chr10	132341791	132386200	pHIT000109676	0	-	132341791	132386200	0	7	178,81,92,72,121,64,101	0,1864,2778,4057,5710,43740,44308
chr10	132385715	132386065	A549_Myers.17597	0	.	132385715	132386065	0	1	350	0
chr10	132398249	132408288	pHIT000109677	0	-	132398249	132408288	0	5	99,108,77,106,141	0,2329,3482,6233,9898
chr10	132431908	132432269	A549_Myers.17598	0	.	132431908	132432269	0	1	361	0
chr10	132478683	132479083	B_Cells_Pritchard.807517	0	.	132478683	132479083	0	1	400	0
chr10	132531025	132564227	pHIT000109679	0	-	132531025	132564227	0	4	186,121,187,52	0,2046,24131,33150
chr10	132613422	132613863	A549_Myers.17600	0	.	132613422	132613863	0	1	441	0
chr10	132661537	132721822	pHIT000018410	0	-	132661537	132721822	0	6	95,132,209,68,46,140	0,38490,38781,53383,59944,60145
chr10	132700027	132721822	pHIT000082852	0	-	132700027	132721822	0	5	132,209,68,46,140	0,291,14893,21454,21655
chr10	132731547	132732061	A549_Myers.17601	0	.	132731547	132732061	0	1	514	0
chr10	133095038	133095636	A549_Myers.17605	0	.	133095038	133095636	0	1	598	0
chr10	133164150	133164472	A549_Myers.17607	0	.	133164150	133164472	0	1	322	0
chr10	133254150	133255572	H1_polyA+.27739	0	.	133254150	133255572	0	1	1422	0
chr10	133336112	133336740	A549_Myers.17608	0	.	133336112	133336740	0	1	628	0
chr10	133336874	133337301	A549_Myers.17609	0	.	133336874	133337301	0	1	427	0
chr10	133338684	133339131	A549_Myers.17610	0	.	133338684	133339131	0	1	447	0
chr10	133360593	133361012	A549_Myers.17612	0	.	133360593	133361012	0	1	419	0
chr10	133368696	133369393	B_Cells_Pritchard.809711	0	.	133368696	133369393	0	1	697	0
chr10	133421770	133422503	MIP101.16567	0	.	133421770	133422503	0	1	733	0
chr10	133424521	133432198	MIP101.16566	0	.	133424521	133432198	0	1	7677	0
chr10	133426026	133426482	B_Cells_Pritchard.809889	0	.	133426026	133426482	0	1	456	0
chr10	133427188	133428322	MeWo_Garraway.8175	0	.	133427188	133428322	0	1	1134	0
chr10	133432302	133434423	MIP101.16569	0	.	133432302	133434423	0	1	2121	0
chr10	133434045	133434436	MeWo_Garraway.8176	0	.	133434045	133434436	0	1	391	0
chr10	133436078	133436756	MeWo_Garraway.8178	0	.	133436078	133436756	0	1	678	0
chr10	133448405	133448765	A549_Myers.17621	0	.	133448405	133448765	0	1	360	0
chr10	133503844	133505303	B_Cells_Pritchard.810103	0	.	133503844	133505303	0	1	1459	0
chr10	133504098	133505052	B_cells_Cheung.47959	0	.	133504098	133505052	0	1	954	0
chr10	133507404	133507723	A549_Myers.17622	0	.	133507404	133507723	0	1	319	0
chr10	133514233	133515834	HIT000047881	0	+	133514233	133515834	0	1	1601	0
chr10	133516750	133517193	A549_Myers.17624	0	.	133516750	133517193	0	1	443	0
chr10	133523852	133524345	A549_Myers.17625	0	.	133523852	133524345	0	1	493	0
chr10	133587291	133597476	B_Cells_Pritchard.813399	0	-	133587291	133597476	0	3	96,1321,1470	0,7270,8715
chr10	133587779	133589656	H1_polyA+.27745	0	.	133587779	133589656	0	1	1877	0
chr10	133589130	133595053	B_cells_Cheung.47968	0	.	133589130	133595053	0	1	5923	0
chr10	133592414	133594470	REMC_BreastStem.12826	0	.	133592414	133594470	0	1	2056	0
chr10	133592606	133592981	A549_Myers.17626	0	.	133592606	133592981	0	1	375	0
chr10	133592611	133593532	melanoma_Garraway_short_term_cultures.16005	0	.	133592611	133593532	0	1	921	0
chr10	133593592	133594381	prostate_carcinoma.24249	0	.	133593592	133594381	0	1	789	0
chr10	133595124	133595897	HepG2_Caltech_ENCODE.9010	0	.	133595124	133595897	0	1	773	0
chr10	133595284	133596248	CD4_Plagnol_resting.14926	0	.	133595284	133596248	0	1	964	0
chr10	133595549	133595875	prostate_normal.14150	0	.	133595549	133595875	0	1	326	0
chr10	133595634	133596845	kidney_Gilad.21139	0	+	133595634	133596845	0	2	385,148	0,1063
chr10	133727621	133728179	A549_Myers.17667	0	.	133727621	133728179	0	1	558	0
chr10	133763421	133763839	A549_Myers.17670	0	.	133763421	133763839	0	1	418	0
chr10	134047742	134048870	REMC_LuminalBreast.25532	0	.	134047742	134048870	0	1	1128	0
chr10	134048080	134049043	B_Cells_Pritchard.811231	0	.	134048080	134049043	0	1	963	0
chr10	134048925	134049604	REMC_LuminalBreast.25533	0	.	134048925	134049604	0	1	679	0
chr10	134049153	134049644	B_Cells_Pritchard.811233	0	.	134049153	134049644	0	1	491	0
chr10	134050183	134051281	REMC_LuminalBreast.25534	0	.	134050183	134051281	0	1	1098	0
chr10	134051003	134051542	B_Cells_Pritchard.811241	0	.	134051003	134051542	0	1	539	0
chr10	134051373	134051690	A549_Myers.17798	0	.	134051373	134051690	0	1	317	0
chr10	134052356	134053003	A549_Myers.17799	0	.	134052356	134053003	0	1	647	0
chr10	134052417	134052992	prostate_normal.14068	0	.	134052417	134052992	0	1	575	0
chr10	134052961	134053520	B_Cells_Pritchard.811245	0	.	134052961	134053520	0	1	559	0
chr10	134053091	134053660	A549_Myers.17800	0	.	134053091	134053660	0	1	569	0
chr10	134053361	134059410	REMC_LuminalBreast.25535	0	.	134053361	134059410	0	1	6049	0
chr10	134054665	134055880	REMC_MyoepithelialBreast.23747	0	.	134054665	134055880	0	1	1215	0
chr10	134055366	134055979	BT20_Thompson.5131	0	.	134055366	134055979	0	1	613	0
chr10	134055637	134057737	B_Cells_Pritchard.811261	0	.	134055637	134057737	0	1	2100	0
chr10	134055653	134056440	HeLa_polyA+_Chen.8518	0	.	134055653	134056440	0	1	787	0
chr10	134055665	134057466	H1_polyA+.27788	0	.	134055665	134057466	0	1	1801	0
chr10	134055815	134056376	melanoma_Garraway_short_term_cultures.16038	0	.	134055815	134056376	0	1	561	0
chr10	134056110	134057803	BT20_Thompson.5132	0	.	134056110	134057803	0	1	1693	0
chr10	134056744	134057843	A549_Myers.17801	0	.	134056744	134057843	0	1	1099	0
chr10	134057223	134058720	REMC_MyoepithelialBreast.23749	0	.	134057223	134058720	0	1	1497	0
chr10	134057254	134057860	CD4_Plagnol_activated.15353	0	.	134057254	134057860	0	1	606	0
chr10	134057261	134058402	prostate_normal.14069	0	.	134057261	134058402	0	1	1141	0
chr10	134058402	134059192	prostate_normal.14070	0	.	134058402	134059192	0	1	790	0
chr10	134058415	134058876	A549_Myers.17802	0	.	134058415	134058876	0	1	461	0
chr10	134058496	134059672	CD4_Plagnol_activated.15354	0	.	134058496	134059672	0	1	1176	0
chr10	134607459	134628783	Rinn_00018073	0	-	134607459	134628783	0	2	2516,105	0,21219
chr10	134607459	134628918	Rinn_00018074	0	-	134607459	134628918	0	2	2516,105	0,21354
chr10	134607636	134608660	brain_AmbionMAQC.10475	0	.	134607636	134608660	0	1	1024	0
chr10	134608869	134609978	brain_AmbionMAQC.10476	0	.	134608869	134609978	0	1	1109	0
chr10	134624230	134624534	A549_Myers.17983	0	.	134624230	134624534	0	1	304	0
chr10	134624832	134625731	Rinn_00018075	0	-	134624832	134625731	0	2	126,480	0,419
chr10	134624833	134625731	ENST00000423232	0	-	134624833	134625731	0	2	125,479	0,419
chr10	134625251	134625702	brain_AmbionMAQC.10477	0	.	134625251	134625702	0	1	451	0
chr10	134626934	134628642	prostate_carcinoma.24212	0	-	134626934	134628642	0	2	45,1611	0,97
chr10	134627208	134628708	HIT000496720	0	-	134627208	134628708	0	1	1500	0
chr10	134627404	134628380	MCF7_Burge_Thompson.7124	0	.	134627404	134628380	0	1	976	0
chr10	134627570	134628613	prostate_normal.14082	0	.	134627570	134628613	0	1	1043	0
chr10	134627586	134628064	brain_AmbionMAQC.10478	0	.	134627586	134628064	0	1	478	0
chr10	134628998	134629397	A549_Myers.17985	0	.	134628998	134629397	0	1	399	0
chr10	134634176	134634899	brain_AmbionMAQC.10479	0	.	134634176	134634899	0	1	723	0
chr10	134636279	134636946	brain_AmbionMAQC.10480	0	.	134636279	134636946	0	1	667	0
chr10	134640038	134640974	brain_AmbionMAQC.10482	0	.	134640038	134640974	0	1	936	0
chr10	134645803	134646357	A549_Myers.17989	0	.	134645803	134646357	0	1	554	0
chr10	134647252	134647586	A549_Myers.17990	0	.	134647252	134647586	0	1	334	0
chr10	134647326	134648468	MCF7_Burge_Thompson.7125	0	.	134647326	134648468	0	1	1142	0
chr10	134650055	134650820	brain_AmbionMAQC.10484	0	.	134650055	134650820	0	1	765	0
chr10	134661062	134661512	A549_Myers.17992	0	.	134661062	134661512	0	1	450	0
chr10	134661088	134661396	prostate_normal.14083	0	.	134661088	134661396	0	1	308	0
chr10	134673088	134673402	A549_Myers.17994	0	.	134673088	134673402	0	1	314	0
chr10	134673111	134676690	HeLa_polyA+_Chen.8539	0	.	134673111	134676690	0	1	3579	0
chr10	134675317	134675696	liver_polyA+.33362	0	.	134675317	134675696	0	1	379	0
chr10	134676044	134683281	pHIT000109712	0	-	134676044	134683281	0	4	143,254,764,240	0,4900,5230,6997
chr10	134676809	134678118	HeLa_polyA+_Chen.8531	0	.	134676809	134678118	0	1	1309	0
chr10	134677149	134678236	T47D_Burge_Thompson.6621	0	.	134677149	134678236	0	1	1087	0
chr10	134677157	134678093	BT20_Thompson.5134	0	.	134677157	134678093	0	1	936	0
chr10	134677175	134678564	MIP101.16648	0	.	134677175	134678564	0	1	1389	0
chr10	134677184	134678100	MDAMB468_Thompson.6055	0	.	134677184	134678100	0	1	916	0
chr10	134677220	134677937	Rinn_00018396	0	+	134677220	134677937	0	3	77,110,121	0,300,596
chr10	134677399	134678423	REMC_LuminalBreast.25560	0	.	134677399	134678423	0	1	1024	0
chr10	134678232	134680607	HeLa_polyA+_Chen.8536	0	.	134678232	134680607	0	1	2375	0
chr10	134678643	134679226	MDAMB468_Thompson.6056	0	.	134678643	134679226	0	1	583	0
chr10	134678688	134680617	MIP101.16649	0	.	134678688	134680617	0	1	1929	0
chr10	134679254	134679743	liver_polyA+.33366	0	.	134679254	134679743	0	1	489	0
chr10	134679591	134680645	REMC_LuminalBreast.25561	0	.	134679591	134680645	0	1	1054	0
chr10	134680682	134681036	HeLa_polyA+_Chen.8538	0	.	134680682	134681036	0	1	354	0
chr10	134682012	134682888	REMC_LuminalBreast.25562	0	.	134682012	134682888	0	1	876	0
chr10	134685505	134686003	A549_Myers.17996	0	.	134685505	134686003	0	1	498	0
chr10	134690275	134690578	A549_Myers.17997	0	.	134690275	134690578	0	1	303	0
chr10	134702698	134703172	A549_Myers.17999	0	.	134702698	134703172	0	1	474	0
chr10	134708903	134709399	A549_Myers.18001	0	.	134708903	134709399	0	1	496	0
chr10	134724017	134724525	A549_Myers.18003	0	.	134724017	134724525	0	1	508	0
chr10	135039943	135041623	H1_polyA+.27873	0	.	135039943	135041623	0	1	1680	0
chr10	135100358	135103753	B_Cells_Pritchard.813737	0	+	135100358	135103753	0	2	66,1618	0,1777
chr10	135100473	135106778	BT474_Burge_Thompson.7380	0	+	135100473	135106778	0	2	75,446	0,5859
chr10	135101931	135103382	REMC_LuminalBreast.25617	0	.	135101931	135103382	0	1	1451	0
chr10	135101953	135104703	prostate_carcinoma.24292	0	+	135101953	135104703	0	2	2650,12	0,2738
chr10	135101953	135104735	prostate_carcinoma.24293	0	.	135101953	135104735	0	1	2782	0
chr10	135102094	135103646	melanoma_Garraway_short_term_cultures.16074	0	.	135102094	135103646	0	1	1552	0
chr10	135102107	135102774	REMC_MyoepithelialBreast.23792	0	.	135102107	135102774	0	1	667	0
chr10	135102469	135102894	B_cells_Cheung.48200	0	.	135102469	135102894	0	1	425	0
chr10	135102843	135104751	REMC_MyoepithelialBreast.23793	0	.	135102843	135104751	0	1	1908	0
chr10	135103870	135104721	B_Cells_Pritchard.813739	0	.	135103870	135104721	0	1	851	0
chr10	135104086	135104637	B_cells_Cheung.48201	0	.	135104086	135104637	0	1	551	0
chr10	135104973	135115370	REMC_LuminalBreast.25619	0	.	135104973	135115370	0	1	10397	0
chr10	135104997	135107519	MIP101.16677	0	.	135104997	135107519	0	1	2522	0
chr10	135105048	135107567	prostate_carcinoma.24294	0	.	135105048	135107567	0	1	2519	0
chr10	135105544	135106105	B_cells_Cheung.48202	0	.	135105544	135106105	0	1	561	0
chr10	135105701	135107579	HepG2_Caltech_ENCODE.8788	0	.	135105701	135107579	0	1	1878	0
chr10	135105808	135107254	B_Cells_Pritchard.813743	0	.	135105808	135107254	0	1	1446	0
chr10	135105870	135107601	prostate_normal.14215	0	.	135105870	135107601	0	1	1731	0
chr10	135105964	135106831	melanoma_Garraway_short_term_cultures.16075	0	.	135105964	135106831	0	1	867	0
chr10	135106156	135106606	B_cells_Cheung.48203	0	.	135106156	135106606	0	1	450	0
chr10	135106187	135107127	MCF7_Burge_Thompson.7148	0	.	135106187	135107127	0	1	940	0
chr10	135106281	135106631	A549_Myers.18143	0	.	135106281	135106631	0	1	350	0
chr10	135106590	135107350	HeLa_polyA+_Chen.8558	0	.	135106590	135107350	0	1	760	0
chr10	135106591	135109490	REMC_MyoepithelialBreast.23795	0	.	135106591	135109490	0	1	2899	0
chr10	135106920	135107305	brain_AmbionMAQC.10577	0	.	135106920	135107305	0	1	385	0
chr10	135107687	135111084	B_Cells_Pritchard.813747	0	.	135107687	135111084	0	1	3397	0
chr10	135107758	135109903	MIP101.16680	0	.	135107758	135109903	0	1	2145	0
chr10	135108501	135109505	BT474_Burge_Thompson.7381	0	.	135108501	135109505	0	1	1004	0
chr10	135108626	135109191	MCF7_Burge_Thompson.7149	0	.	135108626	135109191	0	1	565	0
chr10	135108658	135109244	brain_AmbionMAQC.10578	0	.	135108658	135109244	0	1	586	0
chr10	135108726	135109420	B_cells_Cheung.48204	0	.	135108726	135109420	0	1	694	0
chr10	135108795	135109131	liver_polyA+.33422	0	.	135108795	135109131	0	1	336	0
chr10	135108870	135113269	HIT000055877	0	+	135108870	135113269	0	2	359,3042	0,1357
chr10	135109251	135109722	MCF7_Burge_Thompson.7150	0	.	135109251	135109722	0	1	471	0
chr10	135286329	135286689	pHIT000018486	0	+	135286329	135286689	0	1	360	0
chr10	135311870	135312543	K562.11255	0	.	135311870	135312543	0	1	673	0
chr11	111278	115784	ENST00000529266	0	-	111278	115784	0	2	148,207	0,4299
chr11	113361	117047	pHIT000109749	0	+	113361	117047	0	4	180,258,182,76	0,430,1977,3610
chr11	113361	117047	pHIT000018488	0	+	113361	117047	0	4	180,252,182,76	0,436,1977,3610
chr11	119530	129099	ENST00000526704	0	-	119530	129099	0	5	1843,58,191,65,144	0,1936,4057,8516,9425
chr11	119735	129099	ENST00000435244	0	-	119735	129099	0	5	1638,58,191,65,144	0,1731,3852,8311,9220
chr11	120182	123784	HIT000488502_02	0	-	120182	123784	0	3	1191,58,197	0,1284,3405
chr11	120206	121297	ENST00000427071	0	-	120206	121297	0	2	881,178	0,913
chr11	123613	129117	HIT000429617	0	-	123613	129117	0	5	165,233,58,65,162	0,950,1276,4433,5342
chr11	123613	129117	ENST00000527683	0	-	123613	129117	0	5	165,233,58,65,162	0,950,1276,4433,5342
chr11	248066	248376	A549_Myers.18182	0	.	248066	248376	0	1	310	0
chr11	248087	248675	B_cells_Cheung.48258	0	.	248087	248675	0	1	588	0
chr11	249032	249619	B_Cells_Pritchard.814415	0	.	249032	249619	0	1	587	0
chr11	249060	249603	B_cells_Cheung.48259	0	.	249060	249603	0	1	543	0
chr11	257569	258652	B_Cells_Pritchard.814439	0	.	257569	258652	0	1	1083	0
chr11	257578	258661	B_cells_Cheung.48260	0	.	257578	258661	0	1	1083	0
chr11	258115	258508	A549_Myers.18184	0	.	258115	258508	0	1	393	0
chr11	258753	263611	B_Cells_Pritchard.814441	0	.	258753	263611	0	1	4858	0
chr11	260206	261783	B_cells_Cheung.48263	0	.	260206	261783	0	1	1577	0
chr11	260346	260891	K562.11289	0	.	260346	260891	0	1	545	0
chr11	261424	263541	CD4_Plagnol_activated.17901	0	.	261424	263541	0	1	2117	0
chr11	261606	263497	CD4_Plagnol_resting.15721	0	.	261606	263497	0	1	1891	0
chr11	261854	263873	B_cells_Cheung.48264	0	.	261854	263873	0	1	2019	0
chr11	266007	267243	CD4_Plagnol_activated.17903	0	.	266007	267243	0	1	1236	0
chr11	266453	267234	CD4_Plagnol_resting.15724	0	.	266453	267234	0	1	781	0
chr11	266840	267172	CD4_Snyder.18844	0	.	266840	267172	0	1	332	0
chr11	277051	277695	REMC_LuminalBreast.25651	0	.	277051	277695	0	1	644	0
chr11	306326	307220	K562.11423	0	.	306326	307220	0	1	894	0
chr11	314092	317642	K562.11305	0	.	314092	317642	0	1	3550	0
chr11	314156	315114	REMC_LuminalBreast.25639	0	.	314156	315114	0	1	958	0
chr11	315666	316563	H1_polyA+.28303	0	.	315666	316563	0	1	897	0
chr11	315986	317867	B_cells_Cheung.48296	0	.	315986	317867	0	1	1881	0
chr11	316476	316817	A549_Myers.18200	0	.	316476	316817	0	1	341	0
chr11	317007	321117	B_Cells_Pritchard.941857	0	+	317007	321117	0	3	621,128,1135	0,2096,2975
chr11	317170	319453	ENST00000534483	0	+	317170	319453	0	2	566,261	0,2022
chr11	319337	322237	B_cells_Cheung.48299	0	.	319337	322237	0	1	2900	0
chr11	322702	323528	B_Cells_Pritchard.941863	0	+	322702	323528	0	2	286,338	0,488
chr11	322759	323635	CD4_Plagnol_activated.15450	0	.	322759	323635	0	1	876	0
chr11	328358	349076	B_Cells_Pritchard.941877	0	+	328358	349076	0	2	341,3842	0,16876
chr11	330783	331501	H1_polyA+.27932	0	.	330783	331501	0	1	718	0
chr11	344901	345844	REMC_BreastStem.12956	0	.	344901	345844	0	1	943	0
chr11	345228	346013	REMC_MyoepithelialBreast.23832	0	.	345228	346013	0	1	785	0
chr11	345251	346370	B_cells_Cheung.48303	0	.	345251	346370	0	1	1119	0
chr11	345253	349076	B_Cells_Pritchard.941879	0	-	345253	349076	0	2	1955,1295	0,2528
chr11	345284	346437	CD4_Plagnol_activated.15451	0	.	345284	346437	0	1	1153	0
chr11	345380	346019	H1_polyA+.27937	0	.	345380	346019	0	1	639	0
chr11	345675	346143	A549_Myers.18202	0	.	345675	346143	0	1	468	0
chr11	346444	348052	melanoma_Garraway_short_term_cultures.16110	0	.	346444	348052	0	1	1608	0
chr11	346445	348167	H1_polyA+.27935	0	.	346445	348167	0	1	1722	0
chr11	346448	348192	BT20_Thompson.5162	0	.	346448	348192	0	1	1744	0
chr11	346448	348367	MCF7_Burge_Thompson.7154	0	.	346448	348367	0	1	1919	0
chr11	346448	348910	B_cells_Cheung.48304	0	.	346448	348910	0	1	2462	0
chr11	346457	347749	REMC_MyoepithelialBreast.23833	0	.	346457	347749	0	1	1292	0
chr11	346457	347949	BT474_Burge_Thompson.7407	0	+	346457	347949	0	2	28,534	0,958
chr11	346459	347361	K562.11310	0	.	346459	347361	0	1	902	0
chr11	346460	348128	Rinn_00019182	0	+	346460	348128	0	2	681,664	0,1004
chr11	346470	346772	ovary_Raymond.65567	0	.	346470	346772	0	1	302	0
chr11	346476	348005	T47D_Burge_Thompson.6663	0	.	346476	348005	0	1	1529	0
chr11	346484	348390	REMC_LuminalBreast.25641	0	.	346484	348390	0	1	1906	0
chr11	346606	347029	H9_polyA+.10944	0	.	346606	347029	0	1	423	0
chr11	346615	347677	HeLa_polyA+_Chen.8583	0	.	346615	347677	0	1	1062	0
chr11	346662	347012	spleen_Raymond.50257	0	.	346662	347012	0	1	350	0
chr11	346697	347461	REMC_BreastStem.12957	0	.	346697	347461	0	1	764	0
chr11	346854	348074	ovary_Raymond.65569	0	-	346854	348074	0	3	304,13,370	0,663,850
chr11	347467	348472	K562.11311	0	.	347467	348472	0	1	1005	0
chr11	347730	348837	CD4_Plagnol_activated.15452	0	.	347730	348837	0	1	1107	0
chr11	347751	348308	HeLa_polyA+_Chen.8585	0	.	347751	348308	0	1	557	0
chr11	350068	350767	B_Cells_Pritchard.814483	0	.	350068	350767	0	1	699	0
chr11	350884	351391	B_Cells_Pritchard.814485	0	.	350884	351391	0	1	507	0
chr11	353939	355201	BT20_Thompson.5163	0	.	353939	355201	0	1	1262	0
chr11	354032	355674	H1_polyA+.27938	0	.	354032	355674	0	1	1642	0
chr11	355797	356898	H1_polyA+.27939	0	.	355797	356898	0	1	1101	0
chr11	356007	356619	B_Cells_Pritchard.814501	0	.	356007	356619	0	1	612	0
chr11	379910	380520	BT20_Thompson.5165	0	.	379910	380520	0	1	610	0
chr11	380004	380480	prostate_carcinoma.24335	0	.	380004	380480	0	1	476	0
chr11	380015	380409	MIP101.16724	0	.	380015	380409	0	1	394	0
chr11	433543	434183	B_Cells_Pritchard.814663	0	+	433543	434183	0	1	640	0
chr11	433546	434242	REMC_LuminalBreast.25652	0	.	433546	434242	0	1	696	0
chr11	433560	434083	prostate_normal.15799	0	.	433560	434083	0	1	523	0
chr11	433566	434216	REMC_MyoepithelialBreast.23841	0	.	433566	434216	0	1	650	0
chr11	435698	436654	B_Cells_Pritchard.814669	0	+	435698	436654	0	1	956	0
chr11	435703	436748	brain_AmbionMAQC.10631	0	.	435703	436748	0	1	1045	0
chr11	435738	436632	prostate_normal.15800	0	.	435738	436632	0	1	894	0
chr11	435745	437325	B_cells_Cheung.48321	0	.	435745	437325	0	1	1580	0
chr11	435748	436634	A549_Myers.18233	0	.	435748	436634	0	1	886	0
chr11	435765	436538	HepG2_Caltech_ENCODE.8838	0	.	435765	436538	0	1	773	0
chr11	435834	437315	MIP101.16734	0	.	435834	437315	0	1	1481	0
chr11	436043	436932	CD4_Plagnol_activated.15465	0	.	436043	436932	0	1	889	0
chr11	436140	437306	BT20_Thompson.5176	0	.	436140	437306	0	1	1166	0
chr11	436895	437332	CD4_Plagnol_resting.15253	0	.	436895	437332	0	1	437	0
chr11	482408	483358	prostate_carcinoma.27125	0	.	482408	483358	0	1	950	0
chr11	482436	483420	CD4_Plagnol_activated.15547	0	.	482436	483420	0	1	984	0
chr11	482439	483486	MDAMB231_Thompson.5414	0	.	482439	483486	0	1	1047	0
chr11	482670	483377	MCF7_Burge_Thompson.7281	0	.	482670	483377	0	1	707	0
chr11	482879	483301	liver_polyA+.33539	0	.	482879	483301	0	1	422	0
chr11	498671	500726	brain_AmbionMAQC.10811	0	-	498671	500726	0	2	112,249	0,1806
chr11	499706	501082	B_cells_Cheung.48354	0	.	499706	501082	0	1	1376	0
chr11	499753	501095	REMC_BreastStem.12979	0	.	499753	501095	0	1	1342	0
chr11	499761	500355	CD4_Plagnol_activated.15470	0	.	499761	500355	0	1	594	0
chr11	499772	500200	MeWo_Garraway.8279	0	.	499772	500200	0	1	428	0
chr11	499776	500337	H9_polyA+.10973	0	.	499776	500337	0	1	561	0
chr11	499780	500350	MCF7_Burge_Thompson.7287	0	.	499780	500350	0	1	570	0
chr11	499803	500471	brain_AmbionMAQC.10813	0	.	499803	500471	0	1	668	0
chr11	499807	500337	melanoma_Garraway_short_term_cultures.16131	0	.	499807	500337	0	1	530	0
chr11	499813	500493	BT20_Thompson.5181	0	.	499813	500493	0	1	680	0
chr11	499834	500278	CD4_Snyder.18887	0	.	499834	500278	0	1	444	0
chr11	499835	500321	NEC_from_H9.17802	0	.	499835	500321	0	1	486	0
chr11	499842	500359	MCF10A_Thompson.5288	0	.	499842	500359	0	1	517	0
chr11	499903	504139	liver_polyA+.33546	0	-	499903	504139	0	4	117,674,119,864	0,1384,2818,3372
chr11	500515	500985	K562.11340	0	.	500515	500985	0	1	470	0
chr11	500681	501061	melanoma_Garraway_short_term_cultures.16132	0	.	500681	501061	0	1	380	0
chr11	501297	507777	REMC_MyoepithelialBreast.23855	0	.	501297	507777	0	1	6480	0
chr11	501305	501977	melanoma_Garraway_short_term_cultures.16133	0	.	501305	501977	0	1	672	0
chr11	501307	505607	B_cells_Cheung.48356	0	.	501307	505607	0	1	4300	0
chr11	501309	502065	K562.11337	0	.	501309	502065	0	1	756	0
chr11	501313	505577	H1_polyA+.27991	0	.	501313	505577	0	1	4264	0
chr11	501321	502053	H9_polyA+.10975	0	.	501321	502053	0	1	732	0
chr11	501328	501975	prostate_normal.15863	0	.	501328	501975	0	1	647	0
chr11	501330	504683	brain_AmbionMAQC.10816	0	.	501330	504683	0	1	3353	0
chr11	501330	506136	REMC_BreastStem.12980	0	.	501330	506136	0	1	4806	0
chr11	501333	502074	CD4_Plagnol_activated.15472	0	.	501333	502074	0	1	741	0
chr11	501334	502000	NEC_from_H9.17803	0	.	501334	502000	0	1	666	0
chr11	501345	501955	MCF10A_Thompson.5289	0	.	501345	501955	0	1	610	0
chr11	501345	501976	BT20_Thompson.5182	0	.	501345	501976	0	1	631	0
chr11	501356	502051	HeLa_polyA+_Chen.8592	0	.	501356	502051	0	1	695	0
chr11	501366	501954	MCF7_Burge_Thompson.7288	0	.	501366	501954	0	1	588	0
chr11	501403	501958	BT474_Burge_Thompson.7444	0	.	501403	501958	0	1	555	0
chr11	501454	501944	lymph_node_Burge.11505	0	.	501454	501944	0	1	490	0
chr11	502507	502813	A549_Myers.18258	0	.	502507	502813	0	1	306	0
chr11	504811	505602	brain_AmbionMAQC.10817	0	.	504811	505602	0	1	791	0
chr11	504846	505611	B_Cells_Pritchard.817619	0	-	504846	505611	0	1	765	0
chr11	505806	506938	B_cells_Cheung.48357	0	.	505806	506938	0	1	1132	0
chr11	506229	506862	H1_polyA+.27992	0	.	506229	506862	0	1	633	0
chr11	508310	508882	REMC_LuminalBreast.25833	0	.	508310	508882	0	1	572	0
chr11	508592	509181	A549_Myers.18260	0	.	508592	509181	0	1	589	0
chr11	510268	513288	REMC_LuminalBreast.25834	0	.	510268	513288	0	1	3020	0
chr11	512438	513232	REMC_MyoepithelialBreast.23859	0	.	512438	513232	0	1	794	0
chr11	512547	513362	B_cells_Cheung.48360	0	.	512547	513362	0	1	815	0
chr11	515352	517801	REMC_LuminalBreast.25835	0	.	515352	517801	0	1	2449	0
chr11	518130	520210	MIP101.16750	0	.	518130	520210	0	1	2080	0
chr11	518168	520459	B_Cells_Pritchard.817647	0	+	518168	520459	0	1	2291	0
chr11	518395	519886	B_cells_Cheung.48328	0	.	518395	519886	0	1	1491	0
chr11	518446	519881	H1_polyA+.27993	0	.	518446	519881	0	1	1435	0
chr11	518562	519645	REMC_BreastStem.12986	0	.	518562	519645	0	1	1083	0
chr11	518726	519182	K562.11343	0	.	518726	519182	0	1	456	0
chr11	518877	520084	brain_AmbionMAQC.10819	0	.	518877	520084	0	1	1207	0
chr11	518906	519659	ENST00000526431	0	+	518906	519659	0	2	41,506	0,247
chr11	555622	556705	melanoma_Garraway_short_term_cultures.16145	0	.	555622	556705	0	1	1083	0
chr11	555629	556734	MIP101.16759	0	.	555629	556734	0	1	1105	0
chr11	555669	556655	brain_AmbionMAQC.10918	0	.	555669	556655	0	1	986	0
chr11	555680	556696	prostate_carcinoma.27133	0	.	555680	556696	0	1	1016	0
chr11	555689	556706	MCF7_Burge_Thompson.7179	0	.	555689	556706	0	1	1017	0
chr11	555693	556395	BT20_Thompson.5189	0	.	555693	556395	0	1	702	0
chr11	555693	556674	prostate_normal.15865	0	.	555693	556674	0	1	981	0
chr11	555697	556689	T47D_Burge_Thompson.6810	0	.	555697	556689	0	1	992	0
chr11	555697	556642	HME_Burge.9697	0	.	555697	556642	0	1	945	0
chr11	555700	556762	H9_polyA+.10993	0	.	555700	556762	0	1	1062	0
chr11	555741	556717	MDAMB231_Thompson.5396	0	.	555741	556717	0	1	976	0
chr11	555896	556399	A549_Myers.18271	0	.	555896	556399	0	1	503	0
chr11	556817	557866	H9_polyA+.10995	0	.	556817	557866	0	1	1049	0
chr11	556913	557898	NEC_from_H9.17817	0	.	556913	557898	0	1	985	0
chr11	557002	557734	BT20_Thompson.5190	0	.	557002	557734	0	1	732	0
chr11	557020	557949	ZR751_Thompson.5859	0	.	557020	557949	0	1	929	0
chr11	557026	557408	colon_Burge.8916	0	.	557026	557408	0	1	382	0
chr11	557062	557384	kidney_Gilad.21360	0	.	557062	557384	0	1	322	0
chr11	557437	557864	H1_rRNA-depleted_UCSD_REMC.21372	0	.	557437	557864	0	1	427	0
chr11	559010	559616	prostate_carcinoma.27134	0	.	559010	559616	0	1	606	0
chr11	559822	560622	REMC_LuminalBreast.25668	0	.	559822	560622	0	1	800	0
chr11	561050	562308	B_cells_Cheung.49401	0	.	561050	562308	0	1	1258	0
chr11	561152	562250	B_Cells_Pritchard.817677	0	+	561152	562250	0	1	1098	0
chr11	561701	562196	BT20_Thompson.5193	0	.	561701	562196	0	1	495	0
chr11	563014	563529	brain_AmbionMAQC.10921	0	.	563014	563529	0	1	515	0
chr11	563019	563628	BT20_Thompson.5197	0	.	563019	563628	0	1	609	0
chr11	563062	563639	B_cells_Cheung.49402	0	.	563062	563639	0	1	577	0
chr11	563799	565885	Rinn_00019162	0	-	563799	565885	0	2	972,698	0,1388
chr11	563800	565885	ENST00000500108	0	-	563800	565885	0	2	971,697	0,1388
chr11	563807	565885	NR_026967	0	-	563807	565885	0	1	2078	0
chr11	631828	633073	CD4_Plagnol_activated.15525	0	.	631828	633073	0	1	1245	0
chr11	631836	632530	CD4_Plagnol_resting.15099	0	.	631836	632530	0	1	694	0
chr11	719010	719676	B_cells_Cheung.48400	0	.	719010	719676	0	1	666	0
chr11	719043	719660	MDAMB231_Thompson.5412	0	.	719043	719660	0	1	617	0
chr11	719224	720198	HepG2_Caltech_ENCODE.8805	0	.	719224	720198	0	1	974	0
chr11	719534	719939	brain_AmbionMAQC.10651	0	.	719534	719939	0	1	405	0
chr11	719662	720508	REMC_MyoepithelialBreast.23865	0	.	719662	720508	0	1	846	0
chr11	731051	731482	B_cells_Cheung.48402	0	.	731051	731482	0	1	431	0
chr11	774417	775458	B_cells_Cheung.55446	0	.	774417	775458	0	1	1041	0
chr11	774485	775304	brain_AmbionMAQC.11126	0	.	774485	775304	0	1	819	0
chr11	774659	775297	CD4_Plagnol_activated.15551	0	.	774659	775297	0	1	638	0
chr11	774703	775268	HeLa_polyA+_Chen.8650	0	.	774703	775268	0	1	565	0
chr11	774849	775276	BT474_Burge_Thompson.7450	0	.	774849	775276	0	1	427	0
chr11	804630	806800	REMC_LuminalBreast.25857	0	.	804630	806800	0	1	2170	0
chr11	804761	806783	REMC_MyoepithelialBreast.23916	0	.	804761	806783	0	1	2022	0
chr11	805882	806772	HepG2_Caltech_ENCODE.9088	0	.	805882	806772	0	1	890	0
chr11	1031963	1032443	A549_Myers.18369	0	.	1031963	1032443	0	1	480	0
chr11	1036928	1041874	prostate_carcinoma.24394	0	+	1036928	1041874	0	2	1243,1166	0,3780
chr11	1037480	1037941	A549_Myers.18371	0	.	1037480	1037941	0	1	461	0
chr11	1038328	1039349	prostate_carcinoma.24396	0	.	1038328	1039349	0	1	1021	0
chr11	1039389	1047094	Rinn_00019195	0	+	1039389	1047094	0	4	573,222,155,1982	0,2232,4848,5723
chr11	1039389	1044513	Rinn_00019194	0	+	1039389	1044513	0	3	573,222,276	0,2232,4848
chr11	1039879	1045284	ENST00000534584	0	+	1039879	1045284	0	4	83,221,154,171	0,1743,4359,5234
chr11	1040335	1041874	prostate_carcinoma.24395	0	.	1040335	1041874	0	1	1539	0
chr11	1041059	1041456	A549_Myers.18373	0	.	1041059	1041456	0	1	397	0
chr11	1041777	1042079	A549_Myers.18374	0	.	1041777	1042079	0	1	302	0
chr11	1042131	1042490	A549_Myers.18375	0	.	1042131	1042490	0	1	359	0
chr11	1042556	1043381	A549_Myers.18376	0	.	1042556	1043381	0	1	825	0
chr11	1042610	1045749	ENST00000531160	0	+	1042610	1045749	0	1	3139	0
chr11	1042610	1045884	HIT000055874	0	+	1042610	1045884	0	1	3274	0
chr11	1043074	1047122	prostate_carcinoma.24397	0	.	1043074	1047122	0	1	4048	0
chr11	1043074	1052942	prostate_carcinoma.24399	0	+	1043074	1052942	0	3	1318,345,1605	0,2039,8263
chr11	1043211	1044023	REMC_LuminalBreast.25882	0	.	1043211	1044023	0	1	812	0
chr11	1043405	1046974	MIP101.16824	0	.	1043405	1046974	0	1	3569	0
chr11	1043408	1046777	prostate_normal.14244	0	.	1043408	1046777	0	1	3369	0
chr11	1044287	1045207	REMC_LuminalBreast.25883	0	.	1044287	1045207	0	1	920	0
chr11	1045127	1045708	BT474_Burge_Thompson.7469	0	.	1045127	1045708	0	1	581	0
chr11	1045790	1046768	BT474_Burge_Thompson.7470	0	.	1045790	1046768	0	1	978	0
chr11	1045997	1046680	H1_polyA+.28079	0	.	1045997	1046680	0	1	683	0
chr11	1047676	1048346	prostate_carcinoma.24400	0	.	1047676	1048346	0	1	670	0
chr11	1047700	1048314	prostate_normal.14245	0	.	1047700	1048314	0	1	614	0
chr11	1050272	1053938	prostate_carcinoma.24398	0	.	1050272	1053938	0	1	3666	0
chr11	1050393	1051122	prostate_normal.14247	0	.	1050393	1051122	0	1	729	0
chr11	1051190	1052909	prostate_normal.14248	0	.	1051190	1052909	0	1	1719	0
chr11	1055589	1056597	prostate_carcinoma.24403	0	.	1055589	1056597	0	1	1008	0
chr11	1060230	1063460	prostate_carcinoma.24405	0	.	1060230	1063460	0	1	3230	0
chr11	1061671	1062082	A549_Myers.18380	0	.	1061671	1062082	0	1	411	0
chr11	1062706	1063426	prostate_normal.14249	0	.	1062706	1063426	0	1	720	0
chr11	1062706	1063117	A549_Myers.18381	0	.	1062706	1063117	0	1	411	0
chr11	1098562	1098908	A549_Myers.18402	0	.	1098562	1098908	0	1	346	0
chr11	1104050	1106858	A549_Myers.18404	0	-	1104050	1106858	0	2	287,529	0,2279
chr11	1105399	1105949	A549_Myers.18406	0	.	1105399	1105949	0	1	550	0
chr11	1106283	1106858	A549_Myers.18405	0	.	1106283	1106858	0	1	575	0
chr11	1112606	1112955	A549_Myers.18408	0	.	1112606	1112955	0	1	349	0
chr11	1113042	1113524	A549_Myers.18409	0	.	1113042	1113524	0	1	482	0
chr11	1130229	1130533	A549_Myers.18412	0	.	1130229	1130533	0	1	304	0
chr11	1246070	1246521	melanoma_Garraway_short_term_cultures.16265	0	.	1246070	1246521	0	1	451	0
chr11	1246075	1246538	prostate_normal.14283	0	.	1246075	1246538	0	1	463	0
chr11	1246077	1246543	H1_polyA+.28084	0	.	1246077	1246543	0	1	466	0
chr11	1246829	1250022	REMC_MyoepithelialBreast.23998	0	.	1246829	1250022	0	1	3193	0
chr11	1246859	1250676	B_cells_Cheung.48472	0	.	1246859	1250676	0	1	3817	0
chr11	1246883	1248068	CD4_Plagnol_resting.15207	0	.	1246883	1248068	0	1	1185	0
chr11	1246987	1250171	H1_polyA+.28085	0	.	1246987	1250171	0	1	3184	0
chr11	1247005	1249879	melanoma_Garraway_short_term_cultures.16266	0	.	1247005	1249879	0	1	2874	0
chr11	1247012	1250304	MIP101.16834	0	.	1247012	1250304	0	1	3292	0
chr11	1247413	1250033	brain_AmbionMAQC.10705	0	.	1247413	1250033	0	1	2620	0
chr11	1247524	1250179	prostate_normal.14282	0	.	1247524	1250179	0	1	2655	0
chr11	1248020	1250685	CD4_Plagnol_activated.15615	0	.	1248020	1250685	0	1	2665	0
chr11	1248256	1248886	CD4_Plagnol_resting.15208	0	.	1248256	1248886	0	1	630	0
chr11	1248330	1248777	A549_Myers.18472	0	.	1248330	1248777	0	1	447	0
chr11	1249075	1250164	CD4_Plagnol_resting.15209	0	.	1249075	1250164	0	1	1089	0
chr11	1249302	1250176	T47D_Burge_Thompson.6711	0	.	1249302	1250176	0	1	874	0
chr11	1249752	1250143	A549_Myers.18473	0	.	1249752	1250143	0	1	391	0
chr11	1250150	1251059	brain_AmbionMAQC.10732	0	.	1250150	1251059	0	1	909	0
chr11	1250286	1250685	prostate_normal.14288	0	.	1250286	1250685	0	1	399	0
chr11	1250304	1251067	REMC_LuminalBreast.25942	0	.	1250304	1251067	0	1	763	0
chr11	1250395	1251039	H1_polyA+.28086	0	.	1250395	1251039	0	1	644	0
chr11	1250584	1251038	MIP101.16835	0	.	1250584	1251038	0	1	454	0
chr11	1250726	1251052	B_cells_Cheung.48473	0	.	1250726	1251052	0	1	326	0
chr11	1250730	1251040	CD4_Plagnol_resting.15211	0	.	1250730	1251040	0	1	310	0
chr11	1287513	1288513	NR_029409	0	+	1287513	1288513	0	1	1000	0
chr11	1287574	1288513	ENST00000530897	0	+	1287574	1288513	0	1	939	0
chr11	1287574	1288537	HIT000093543	0	+	1287574	1288537	0	1	963	0
chr11	1312622	1314734	H1_polyA+.28091	0	-	1312622	1314734	0	2	1424,502	0,1610
chr11	1313835	1314531	A549_Myers.18498	0	.	1313835	1314531	0	1	696	0
chr11	1314670	1316423	B_Cells_Pritchard.816193	0	.	1314670	1316423	0	1	1753	0
chr11	1315149	1315777	prostate_carcinoma.24436	0	.	1315149	1315777	0	1	628	0
chr11	1315387	1316216	MIP101.16856	0	.	1315387	1316216	0	1	829	0
chr11	1315589	1316541	H1_polyA+.28093	0	.	1315589	1316541	0	1	952	0
chr11	1317972	1318431	A549_Myers.18500	0	.	1317972	1318431	0	1	459	0
chr11	1331549	1332294	T47D_Burge_Thompson.6715	0	.	1331549	1332294	0	1	745	0
chr11	1331809	1332266	A549_Myers.18502	0	.	1331809	1332266	0	1	457	0
chr11	1335823	1336393	B_Cells_Pritchard.816261	0	.	1335823	1336393	0	1	570	0
chr11	1338426	1338784	A549_Myers.18504	0	.	1338426	1338784	0	1	358	0
chr11	1353286	1353892	A549_Myers.18506	0	.	1353286	1353892	0	1	606	0
chr11	1355155	1355498	A549_Myers.18507	0	.	1355155	1355498	0	1	343	0
chr11	1359395	1360077	A549_Myers.18508	0	.	1359395	1360077	0	1	682	0
chr11	1360290	1361443	A549_Myers.18509	0	.	1360290	1361443	0	1	1153	0
chr11	1360696	1361023	B_Cells_Pritchard.816353	0	.	1360696	1361023	0	1	327	0
chr11	1361142	1361685	B_Cells_Pritchard.816355	0	.	1361142	1361685	0	1	543	0
chr11	1362979	1363966	H1_polyA+.28095	0	.	1362979	1363966	0	1	987	0
chr11	1364817	1366090	melanoma_Garraway_short_term_cultures.16271	0	.	1364817	1366090	0	1	1273	0
chr11	1365255	1365986	prostate_carcinoma.24438	0	.	1365255	1365986	0	1	731	0
chr11	1440904	1442501	REMC_LuminalBreast.25954	0	.	1440904	1442501	0	1	1597	0
chr11	1442127	1444367	prostate_normal.14310	0	.	1442127	1444367	0	1	2240	0
chr11	1442263	1443742	brain_AmbionMAQC.10851	0	.	1442263	1443742	0	1	1479	0
chr11	1442497	1442907	B_cells_Cheung.48487	0	.	1442497	1442907	0	1	410	0
chr11	1442664	1444054	REMC_LuminalBreast.25955	0	.	1442664	1444054	0	1	1390	0
chr11	1442790	1443908	REMC_MyoepithelialBreast.23968	0	.	1442790	1443908	0	1	1118	0
chr11	1442950	1444324	MIP101.16862	0	.	1442950	1444324	0	1	1374	0
chr11	1442968	1443463	B_cells_Cheung.48488	0	.	1442968	1443463	0	1	495	0
chr11	1443534	1444240	B_cells_Cheung.48489	0	.	1443534	1444240	0	1	706	0
chr11	1443991	1445261	REMC_MyoepithelialBreast.23969	0	.	1443991	1445261	0	1	1270	0
chr11	1444510	1445281	B_Cells_Pritchard.816567	0	.	1444510	1445281	0	1	771	0
chr11	1444579	1445319	B_cells_Cheung.48490	0	.	1444579	1445319	0	1	740	0
chr11	1444894	1446003	brain_AmbionMAQC.10853	0	.	1444894	1446003	0	1	1109	0
chr11	1750331	1751128	A549_Myers.18628	0	.	1750331	1751128	0	1	797	0
chr11	1754741	1756937	ZR751_Thompson.5944	0	-	1754741	1756937	0	2	239,198	0,1998
chr11	1755797	1756150	A549_Myers.18631	0	.	1755797	1756150	0	1	353	0
chr11	1761123	1761458	A549_Myers.18635	0	.	1761123	1761458	0	1	335	0
chr11	1801859	1802338	A549_Myers.18642	0	.	1801859	1802338	0	1	479	0
chr11	1802814	1803195	A549_Myers.18643	0	.	1802814	1803195	0	1	381	0
chr11	1803693	1804003	A549_Myers.18644	0	.	1803693	1804003	0	1	310	0
chr11	1804518	1805007	A549_Myers.18645	0	.	1804518	1805007	0	1	489	0
chr11	1820805	1821117	A549_Myers.18659	0	.	1820805	1821117	0	1	312	0
chr11	1821875	1822278	A549_Myers.18660	0	.	1821875	1822278	0	1	403	0
chr11	1822037	1822764	B_Cells_Pritchard.817569	0	.	1822037	1822764	0	1	727	0
chr11	1824351	1825873	B_Cells_Pritchard.817577	0	.	1824351	1825873	0	1	1522	0
chr11	1825072	1825930	B_cells_Cheung.48575	0	.	1825072	1825930	0	1	858	0
chr11	1826453	1827194	B_cells_Cheung.48576	0	.	1826453	1827194	0	1	741	0
chr11	1826487	1827081	B_Cells_Pritchard.817581	0	.	1826487	1827081	0	1	594	0
chr11	1827257	1828215	B_Cells_Pritchard.817583	0	.	1827257	1828215	0	1	958	0
chr11	1827258	1828195	B_cells_Cheung.48577	0	.	1827258	1828195	0	1	937	0
chr11	1829150	1829509	CD4_Plagnol_resting.15613	0	.	1829150	1829509	0	1	359	0
chr11	1829256	1829724	A549_Myers.18662	0	.	1829256	1829724	0	1	468	0
chr11	1871131	1871828	CD4_Plagnol_activated.15749	0	.	1871131	1871828	0	1	697	0
chr11	1873396	1874085	B_Cells_Pritchard.932375	0	+	1873396	1874085	0	1	689	0
chr11	1874377	1886159	B_Cells_Pritchard.932379	0	+	1874377	1886159	0	4	574,114,153,522	0,6039,6532,11260
chr11	1880451	1885721	Rinn_00019134	0	+	1880451	1885721	0	3	79,154,85	0,457,5185
chr11	1882225	1882536	B_cells_Cheung.49011	0	.	1882225	1882536	0	1	311	0
chr11	1883493	1884788	B_cells_Cheung.49012	0	.	1883493	1884788	0	1	1295	0
chr11	1887341	1888955	B_cells_Cheung.49014	0	.	1887341	1888955	0	1	1614	0
chr11	1893530	1895541	CD4_Plagnol_resting.15645	0	.	1893530	1895541	0	1	2011	0
chr11	1893542	1895514	CD4_Plagnol_activated.15750	0	.	1893542	1895514	0	1	1972	0
chr11	1893656	1895313	B_Cells_Pritchard.932437	0	-	1893656	1895313	0	1	1657	0
chr11	1893721	1894228	prostate_carcinoma.24630	0	.	1893721	1894228	0	1	507	0
chr11	1962323	1964264	melanoma_Garraway_short_term_cultures.16305	0	.	1962323	1964264	0	1	1941	0
chr11	1962524	1963016	H9_polyA+.11081	0	.	1962524	1963016	0	1	492	0
chr11	1962895	1963568	HeLa_polyA+_Chen.8700	0	.	1962895	1963568	0	1	673	0
chr11	1963079	1963875	H9_polyA+.11087	0	.	1963079	1963875	0	1	796	0
chr11	1963184	1963837	REMC_MyoepithelialBreast.24023	0	.	1963184	1963837	0	1	653	0
chr11	1963885	1965256	B_cells_Cheung.48669	0	.	1963885	1965256	0	1	1371	0
chr11	1964440	1965046	prostate_carcinoma.24652	0	.	1964440	1965046	0	1	606	0
chr11	1964581	1964938	B_Cells_Pritchard.818071	0	.	1964581	1964938	0	1	357	0
chr11	1964647	1965196	brain_AmbionMAQC.10780	0	.	1964647	1965196	0	1	549	0
chr11	1965760	1966291	B_Cells_Pritchard.818077	0	.	1965760	1966291	0	1	531	0
chr11	1965760	1966484	brain_AmbionMAQC.10781	0	.	1965760	1966484	0	1	724	0
chr11	1966092	1967336	B_cells_Cheung.48671	0	.	1966092	1967336	0	1	1244	0
chr11	1966115	1966425	A549_Myers.18713	0	.	1966115	1966425	0	1	310	0
chr11	1966178	1966546	T47D_Burge_Thompson.6754	0	.	1966178	1966546	0	1	368	0
chr11	1967501	1969049	B_Cells_Pritchard.818085	0	.	1967501	1969049	0	1	1548	0
chr11	1967564	1967973	B_cells_Cheung.48672	0	.	1967564	1967973	0	1	409	0
chr11	1968049	1968714	prostate_carcinoma.24653	0	.	1968049	1968714	0	1	665	0
chr11	1968093	1968588	T47D_Burge_Thompson.6755	0	.	1968093	1968588	0	1	495	0
chr11	1968173	1969030	brain_AmbionMAQC.10782	0	.	1968173	1969030	0	1	857	0
chr11	1968416	1969188	H1_polyA+.28192	0	.	1968416	1969188	0	1	772	0
chr11	1968436	1969534	B_cells_Cheung.48674	0	.	1968436	1969534	0	1	1098	0
chr11	1968756	1970080	MIP101.16998	0	.	1968756	1970080	0	1	1324	0
chr11	1968900	1971275	Rinn_00019135	0	+	1968900	1971275	0	3	165,344,216	0,842,2159
chr11	1968901	1971275	ENST00000418612	0	+	1968901	1971275	0	3	164,343,215	0,842,2159
chr11	1969192	1971024	melanoma_Garraway_short_term_cultures.16306	0	.	1969192	1971024	0	1	1832	0
chr11	1969223	1970805	B_Cells_Pritchard.818087	0	.	1969223	1970805	0	1	1582	0
chr11	1969602	1971451	B_cells_Cheung.48675	0	.	1969602	1971451	0	1	1849	0
chr11	1969752	1970101	T47D_Burge_Thompson.6757	0	.	1969752	1970101	0	1	349	0
chr11	1970197	1971403	MIP101.16999	0	.	1970197	1971403	0	1	1206	0
chr11	1970526	1971333	brain_AmbionMAQC.10784	0	.	1970526	1971333	0	1	807	0
chr11	1970732	1971407	prostate_normal.14377	0	.	1970732	1971407	0	1	675	0
chr11	1970754	1971299	T47D_Burge_Thompson.6758	0	.	1970754	1971299	0	1	545	0
chr11	1970968	1971457	B_Cells_Pritchard.818089	0	.	1970968	1971457	0	1	489	0
chr11	1972943	1973320	HIT000338440	0	-	1972943	1973320	0	1	377	0
chr11	1972953	1973668	A549_Myers.18704	0	.	1972953	1973668	0	1	715	0
chr11	1972979	1973612	kidney_Gilad.21566	0	.	1972979	1973612	0	1	633	0
chr11	1972980	1973621	adipose_Burge.9096	0	.	1972980	1973621	0	1	641	0
chr11	1972981	1974002	heart_Burge.7203	0	.	1972981	1974002	0	1	1021	0
chr11	1972981	1974002	lymph_node_Burge.11645	0	.	1972981	1974002	0	1	1021	0
chr11	1972981	1973769	HIT000292653	0	+	1972981	1973769	0	2	619,88	0,700
chr11	1972981	1973459	HIT000290106	0	+	1972981	1973459	0	1	478	0
chr11	1972981	1973589	HIT000288285	0	+	1972981	1973589	0	1	608	0
chr11	1972989	1973806	HIT000284918	0	+	1972989	1973806	0	2	611,125	0,692
chr11	1972992	1973589	H9_polyA+.11088	0	.	1972992	1973589	0	1	597	0
chr11	1973000	1973551	brain_AmbionMAQC.10785	0	.	1973000	1973551	0	1	551	0
chr11	1973015	1973602	HIT000305197	0	+	1973015	1973602	0	1	587	0
chr11	1973034	1973805	MDAMB468_Thompson.6177	0	.	1973034	1973805	0	1	771	0
chr11	1973045	1973580	ZR751_Thompson.5945	0	.	1973045	1973580	0	1	535	0
chr11	1973101	1973802	MeWo_Garraway.8405	0	.	1973101	1973802	0	1	701	0
chr11	1983530	1985156	H1_polyA+.28196	0	.	1983530	1985156	0	1	1626	0
chr11	1983815	1985323	prostate_carcinoma.24658	0	.	1983815	1985323	0	1	1508	0
chr11	1985443	1986710	prostate_carcinoma.24659	0	.	1985443	1986710	0	1	1267	0
chr11	1985459	1987710	H1_polyA+.28197	0	.	1985459	1987710	0	1	2251	0
chr11	1988587	1992129	prostate_carcinoma.24661	0	.	1988587	1992129	0	1	3542	0
chr11	1989283	1989690	B_Cells_Pritchard.818153	0	.	1989283	1989690	0	1	407	0
chr11	1989358	1992716	B_cells_Cheung.48677	0	+	1989358	1992716	0	2	138,1807	0,1551
chr11	1989429	1990783	MCF7_Burge_Thompson.7298	0	.	1989429	1990783	0	1	1354	0
chr11	1989764	1992730	melanoma_Garraway_short_term_cultures.16311	0	.	1989764	1992730	0	1	2966	0
chr11	1989843	1992723	B_Cells_Pritchard.818155	0	.	1989843	1992723	0	1	2880	0
chr11	1990023	1992438	H1_polyA+.28198	0	.	1990023	1992438	0	1	2415	0
chr11	1990162	1992716	B_cells_Cheung.48678	0	.	1990162	1992716	0	1	2554	0
chr11	1990198	1992428	brain_AmbionMAQC.10789	0	.	1990198	1992428	0	1	2230	0
chr11	1990993	1992130	MCF7_Burge_Thompson.7299	0	.	1990993	1992130	0	1	1137	0
chr11	1991559	1992042	A549_Myers.18719	0	.	1991559	1992042	0	1	483	0
chr11	1991732	1992606	prostate_normal.14381	0	.	1991732	1992606	0	1	874	0
chr11	1999547	2000234	A549_Myers.18721	0	.	1999547	2000234	0	1	687	0
chr11	2002855	2003231	A549_Myers.18722	0	.	2002855	2003231	0	1	376	0
chr11	2004947	2005370	A549_Myers.18723	0	.	2004947	2005370	0	1	423	0
chr11	2015004	2015470	A549_Myers.18725	0	.	2015004	2015470	0	1	466	0
chr11	2019053	2019585	A549_Myers.18726	0	.	2019053	2019585	0	1	532	0
chr11	2022943	2023267	BT474_Burge_Thompson.7532	0	.	2022943	2023267	0	1	324	0
chr11	2062669	2063067	A549_Myers.18727	0	.	2062669	2063067	0	1	398	0
chr11	2069146	2069495	A549_Myers.18728	0	.	2069146	2069495	0	1	349	0
chr11	2070095	2070501	A549_Myers.18729	0	.	2070095	2070501	0	1	406	0
chr11	2076575	2076918	A549_Myers.18732	0	.	2076575	2076918	0	1	343	0
chr11	2077518	2077857	A549_Myers.18733	0	.	2077518	2077857	0	1	339	0
chr11	2150646	2151038	A549_Myers.18777	0	.	2150646	2151038	0	1	392	0
chr11	2151625	2152803	liver_polyA+.33817	0	.	2151625	2152803	0	1	1178	0
chr11	2153282	2155639	liver_polyA+.33820	0	.	2153282	2155639	0	1	2357	0
chr11	2153282	2165820	liver_polyA+.33819	0	-	2153282	2165820	0	2	1305,63	0,12475
chr11	2153868	2154627	A549_Myers.18778	0	.	2153868	2154627	0	1	759	0
chr11	2156609	2159097	liver_polyA+.33821	0	.	2156609	2159097	0	1	2488	0
chr11	2156758	2158508	MIP101.16950	0	.	2156758	2158508	0	1	1750	0
chr11	2159767	2160871	liver_polyA+.33823	0	.	2159767	2160871	0	1	1104	0
chr11	2160295	2160897	MIP101.16951	0	.	2160295	2160897	0	1	602	0
chr11	2160471	2160871	kidney_Gilad.21579	0	.	2160471	2160871	0	1	400	0
chr11	2162274	2166653	MIP101.16952	0	.	2162274	2166653	0	1	4379	0
chr11	2163849	2164350	A549_Myers.18779	0	.	2163849	2164350	0	1	501	0
chr11	2164722	2166634	BT474_Burge_Thompson.7537	0	.	2164722	2166634	0	1	1912	0
chr11	2164761	2165714	MCF7_Burge_Thompson.7306	0	.	2164761	2165714	0	1	953	0
chr11	2164863	2165733	ZR751_Thompson.5950	0	.	2164863	2165733	0	1	870	0
chr11	2165217	2165972	A549_Myers.18780	0	.	2165217	2165972	0	1	755	0
chr11	2165365	2166063	B_Cells_Pritchard.818669	0	-	2165365	2166063	0	3	224,41,322	0,281,376
chr11	2167888	2169267	MIP101.16953	0	.	2167888	2169267	0	1	1379	0
chr11	2167947	2168672	MCF7_Burge_Thompson.7307	0	.	2167947	2168672	0	1	725	0
chr11	2170974	2171934	MIP101.16955	0	.	2170974	2171934	0	1	960	0
chr11	2171339	2171720	MCF7_Burge_Thompson.7308	0	.	2171339	2171720	0	1	381	0
chr11	2172168	2174570	MIP101.16956	0	.	2172168	2174570	0	1	2402	0
chr11	2172219	2172967	A549_Myers.18786	0	.	2172219	2172967	0	1	748	0
chr11	2175690	2176464	MIP101.16960	0	.	2175690	2176464	0	1	774	0
chr11	2176271	2176732	A549_Myers.18788	0	.	2176271	2176732	0	1	461	0
chr11	2177568	2189817	MIP101.16957	0	+	2177568	2189817	0	3	9,566,5007	0,6528,7242
chr11	2181138	2181999	HepG2_Caltech_ENCODE.8942	0	.	2181138	2181999	0	1	861	0
chr11	2184408	2187736	HepG2_Caltech_ENCODE.8943	0	.	2184408	2187736	0	1	3328	0
chr11	2184929	2186958	prostate_carcinoma.24665	0	.	2184929	2186958	0	1	2029	0
chr11	2185457	2187543	BT474_Burge_Thompson.7538	0	.	2185457	2187543	0	1	2086	0
chr11	2185482	2189817	MIP101.16959	0	-	2185482	2189817	0	2	3292,85	0,4250
chr11	2186402	2187133	MCF7_Burge_Thompson.7310	0	.	2186402	2187133	0	1	731	0
chr11	2187204	2187604	MCF7_Burge_Thompson.7311	0	.	2187204	2187604	0	1	400	0
chr11	2187729	2188741	prostate_carcinoma.24666	0	.	2187729	2188741	0	1	1012	0
chr11	2187822	2188984	HepG2_Caltech_ENCODE.8944	0	.	2187822	2188984	0	1	1162	0
chr11	2188056	2188808	BT474_Burge_Thompson.7539	0	.	2188056	2188808	0	1	752	0
chr11	2188371	2188723	MCF7_Burge_Thompson.7312	0	.	2188371	2188723	0	1	352	0
chr11	2188431	2189047	A549_Myers.18791	0	.	2188431	2189047	0	1	616	0
chr11	2188918	2189621	BT474_Burge_Thompson.7540	0	.	2188918	2189621	0	1	703	0
chr11	2190089	2196446	MIP101.16958	0	.	2190089	2196446	0	1	6357	0
chr11	2191018	2191615	HepG2_Caltech_ENCODE.8945	0	.	2191018	2191615	0	1	597	0
chr11	2192505	2193197	A549_Myers.18793	0	.	2192505	2193197	0	1	692	0
chr11	2194159	2194678	BT474_Burge_Thompson.7543	0	.	2194159	2194678	0	1	519	0
chr11	2194972	2195323	A549_Myers.18794	0	.	2194972	2195323	0	1	351	0
chr11	2197069	2198293	MIP101.16964	0	.	2197069	2198293	0	1	1224	0
chr11	2198529	2202518	MIP101.16965	0	.	2198529	2202518	0	1	3989	0
chr11	2206485	2218488	MIP101.16971	0	-	2206485	2218488	0	5	269,45,1064,525,150	0,8621,8801,11249,11853
chr11	2206808	2207743	MIP101.16973	0	.	2206808	2207743	0	1	935	0
chr11	2207813	2209672	MIP101.16966	0	.	2207813	2209672	0	1	1859	0
chr11	2212585	2212981	MIP101.16976	0	.	2212585	2212981	0	1	396	0
chr11	2215314	2216857	MIP101.16972	0	.	2215314	2216857	0	1	1543	0
chr11	2250090	2250621	BT20_Thompson.5241	0	.	2250090	2250621	0	1	531	0
chr11	2252820	2256598	MIP101.16987	0	.	2252820	2256598	0	1	3778	0
chr11	2268337	2268651	A549_Myers.18800	0	.	2268337	2268651	0	1	314	0
chr11	2271344	2272966	CD4_Plagnol_resting.15276	0	.	2271344	2272966	0	1	1622	0
chr11	2297232	2298597	H1_polyA+.28214	0	.	2297232	2298597	0	1	1365	0
chr11	2297440	2298141	B_Cells_Pritchard.819009	0	.	2297440	2298141	0	1	701	0
chr11	2297475	2298128	CD4_Plagnol_resting.15278	0	.	2297475	2298128	0	1	653	0
chr11	2303965	2305432	prostate_carcinoma.24747	0	.	2303965	2305432	0	1	1467	0
chr11	2304211	2305451	CD4_Plagnol_resting.15289	0	.	2304211	2305451	0	1	1240	0
chr11	2304356	2305428	B_cells_Cheung.48692	0	.	2304356	2305428	0	1	1072	0
chr11	2304820	2305403	B_Cells_Pritchard.819035	0	.	2304820	2305403	0	1	583	0
chr11	2318749	2320468	REMC_LuminalBreast.26062	0	.	2318749	2320468	0	1	1719	0
chr11	2323209	2326594	H1_polyA+.28222	0	.	2323209	2326594	0	1	3385	0
chr11	2324944	2326936	B_cells_Cheung.48699	0	.	2324944	2326936	0	1	1992	0
chr11	2325058	2326497	B_Cells_Pritchard.819093	0	.	2325058	2326497	0	1	1439	0
chr11	2326247	2328200	HIT000242934	0	-	2326247	2328200	0	1	1953	0
chr11	2329246	2330236	H1_polyA+.28223	0	.	2329246	2330236	0	1	990	0
chr11	2336678	2338264	H1_polyA+.28227	0	.	2336678	2338264	0	1	1586	0
chr11	2336724	2338525	B_cells_Cheung.48700	0	.	2336724	2338525	0	1	1801	0
chr11	2337610	2338069	B_Cells_Pritchard.819135	0	.	2337610	2338069	0	1	459	0
chr11	2338807	2348150	H1_polyA+.28228	0	.	2338807	2348150	0	1	9343	0
chr11	2338965	2345697	H9_polyA+.11148	0	+	2338965	2345697	0	2	312,1436	0,5296
chr11	2339523	2340512	B_cells_Cheung.48701	0	.	2339523	2340512	0	1	989	0
chr11	2340709	2341473	B_Cells_Pritchard.819143	0	.	2340709	2341473	0	1	764	0
chr11	2342256	2348162	B_cells_Cheung.48702	0	.	2342256	2348162	0	1	5906	0
chr11	2342532	2344077	MIP101.17071	0	.	2342532	2344077	0	1	1545	0
chr11	2342558	2344977	B_Cells_Pritchard.819149	0	.	2342558	2344977	0	1	2419	0
chr11	2342587	2343974	REMC_LuminalBreast.26064	0	.	2342587	2343974	0	1	1387	0
chr11	2342654	2344092	prostate_carcinoma.24754	0	.	2342654	2344092	0	1	1438	0
chr11	2342888	2343979	HeLa_polyA+_Chen.8713	0	.	2342888	2343979	0	1	1091	0
chr11	2343368	2344133	brain_AmbionMAQC.10800	0	.	2343368	2344133	0	1	765	0
chr11	2344254	2348280	prostate_carcinoma.24755	0	.	2344254	2348280	0	1	4026	0
chr11	2344516	2344971	K562.11488	0	.	2344516	2344971	0	1	455	0
chr11	2346216	2349920	B_Cells_Pritchard.819153	0	-	2346216	2349920	0	2	1930,638	0,3066
chr11	2346506	2346811	A549_Myers.18812	0	.	2346506	2346811	0	1	305	0
chr11	2351195	2353002	H9_polyA+.11149	0	.	2351195	2353002	0	1	1807	0
chr11	2352334	2353558	prostate_normal.14400	0	.	2352334	2353558	0	1	1224	0
chr11	2353126	2353678	HeLa_polyA+_Chen.8714	0	.	2353126	2353678	0	1	552	0
chr11	2376733	2378116	CD4_Snyder.19002	0	.	2376733	2378116	0	1	1383	0
chr11	2376913	2378041	melanoma_Garraway_short_term_cultures.16315	0	.	2376913	2378041	0	1	1128	0
chr11	2403590	2404363	REMC_LuminalBreast.26022	0	.	2403590	2404363	0	1	773	0
chr11	2404518	2406659	REMC_LuminalBreast.26023	0	.	2404518	2406659	0	1	2141	0
chr11	2404928	2415003	khalil_335	0	.	2404928	2415003	0	6	449,203,186,426,240,329	0,4930,5454,8287,8848,9746
chr11	2405223	2405718	A549_Myers.18821	0	.	2405223	2405718	0	1	495	0
chr11	2406125	2408878	A549_Myers.18822	0	+	2406125	2408878	0	4	144,110,85,141	0,157,678,2612
chr11	2406239	2407282	H1_polyA+.28210	0	.	2406239	2407282	0	1	1043	0
chr11	2406787	2408537	colon_Raymond.32785	0	-	2406787	2408537	0	2	254,283	0,1467
chr11	2406907	2408082	REMC_LuminalBreast.26024	0	.	2406907	2408082	0	1	1175	0
chr11	2408227	2408537	colon_Raymond.32784	0	.	2408227	2408537	0	1	310	0
chr11	2408621	2409360	MIP101.17087	0	.	2408621	2409360	0	1	739	0
chr11	2408634	2410118	REMC_LuminalBreast.26025	0	.	2408634	2410118	0	1	1484	0
chr11	2409443	2412996	MIP101.17081	0	.	2409443	2412996	0	1	3553	0
chr11	2410699	2411180	A549_Myers.18823	0	.	2410699	2411180	0	1	481	0
chr11	2411407	2411769	A549_Myers.18824	0	.	2411407	2411769	0	1	362	0
chr11	2411656	2413354	REMC_LuminalBreast.26026	0	.	2411656	2413354	0	1	1698	0
chr11	2411963	2412575	A549_Myers.18825	0	.	2411963	2412575	0	1	612	0
chr11	2412993	2413751	prostate_carcinoma.24675	0	.	2412993	2413751	0	1	758	0
chr11	2414793	2419310	REMC_LuminalBreast.26027	0	.	2414793	2419310	0	1	4517	0
chr11	2417733	2419470	MIP101.17089	0	.	2417733	2419470	0	1	1737	0
chr11	2419604	2421740	REMC_LuminalBreast.26028	0	.	2419604	2421740	0	1	2136	0
chr11	3146910	3147506	prostate_carcinoma.24780	0	.	3146910	3147506	0	1	596	0
chr11	3147111	3147579	A549_Myers.18979	0	.	3147111	3147579	0	1	468	0
chr11	3158808	3159815	K562.11552	0	.	3158808	3159815	0	1	1007	0
chr11	3173246	3191668	pHIT000109907	0	+	3173246	3191668	0	4	140,189,126,139	0,784,2684,18283
chr11	3180656	3181029	A549_Myers.18981	0	.	3180656	3181029	0	1	373	0
chr11	3183149	3183482	A549_Myers.18982	0	.	3183149	3183482	0	1	333	0
chr11	3184330	3184986	H1_polyA+.28289	0	.	3184330	3184986	0	1	656	0
chr11	3214789	3216631	REMC_LuminalBreast.26095	0	.	3214789	3216631	0	1	1842	0
chr11	3316533	3317061	B_cells_Cheung.48849	0	.	3316533	3317061	0	1	528	0
chr11	4181231	4182626	prostate_carcinoma.24875	0	.	4181231	4182626	0	1	1395	0
chr11	6180950	6182052	ZR751_Thompson.6007	0	.	6180950	6182052	0	1	1102	0
chr11	6181013	6181468	H1_rRNA-depleted_UCSD_REMC.21804	0	.	6181013	6181468	0	1	455	0
chr11	6181659	6182103	HeLa_polyA+_Chen.8803	0	.	6181659	6182103	0	1	444	0
chr11	6301027	6318413	H1_polyA+.28512	0	+	6301027	6318413	0	3	815,630,6992	0,6614,10394
chr11	6301685	6312984	B_cells_Cheung.49061	0	+	6301685	6312984	0	4	156,1100,93,633	0,5486,9736,10666
chr11	6310971	6318413	H1_polyA+.28513	0	.	6310971	6318413	0	1	7442	0
chr11	6312328	6313434	melanoma_Garraway_short_term_cultures.16483	0	.	6312328	6313434	0	1	1106	0
chr11	6312359	6315531	REMC_LuminalBreast.26235	0	.	6312359	6315531	0	1	3172	0
chr11	6321240	6321558	prostate_carcinoma.25074	0	.	6321240	6321558	0	1	318	0
chr11	6322141	6323830	H1_polyA+.28520	0	.	6322141	6323830	0	1	1689	0
chr11	6340604	6343068	HIT000014752	0	-	6340604	6343068	0	2	312,976	0,1488
chr11	6349729	6350145	BT474_Burge_Thompson.7649	0	.	6349729	6350145	0	1	416	0
chr11	6365847	6366766	REMC_LuminalBreast.26241	0	.	6365847	6366766	0	1	919	0
chr11	6405079	6407162	REMC_MyoepithelialBreast.24919	0	.	6405079	6407162	0	1	2083	0
chr11	6405102	6406241	REMC_BreastStem.13361	0	.	6405102	6406241	0	1	1139	0
chr11	6424323	6425304	REMC_BreastStem.14123	0	.	6424323	6425304	0	1	981	0
chr11	6556273	6561828	REMC_MyoepithelialBreast.24942	0	.	6556273	6561828	0	1	5555	0
chr11	6557109	6559836	REMC_BreastStem.14239	0	.	6557109	6559836	0	1	2727	0
chr11	6557200	6561652	B_cells_Cheung.55309	0	.	6557200	6561652	0	1	4452	0
chr11	6557203	6558058	H1_polyA+.28868	0	.	6557203	6558058	0	1	855	0
chr11	6557232	6559307	B_Cells_Pritchard.827983	0	.	6557232	6559307	0	1	2075	0
chr11	6558606	6565627	A549_Myers.19147	0	-	6558606	6565627	0	2	150,161	0,6860
chr11	6559836	6564371	REMC_BreastStem.14240	0	.	6559836	6564371	0	1	4535	0
chr11	6561945	6564649	REMC_MyoepithelialBreast.24943	0	.	6561945	6564649	0	1	2704	0
chr11	6563917	6565876	B_Cells_Pritchard.828009	0	.	6563917	6565876	0	1	1959	0
chr11	6564458	6567512	REMC_BreastStem.14241	0	.	6564458	6567512	0	1	3054	0
chr11	6567599	6571601	CD4_Plagnol_activated.16288	0	.	6567599	6571601	0	1	4002	0
chr11	6567926	6570084	BT474_Burge_Thompson.8291	0	.	6567926	6570084	0	1	2158	0
chr11	6568430	6570162	ZR751_Thompson.6036	0	.	6568430	6570162	0	1	1732	0
chr11	6569166	6570167	brain_AmbionMAQC.11001	0	.	6569166	6570167	0	1	1001	0
chr11	6569193	6569936	CD4_Snyder.19321	0	.	6569193	6569936	0	1	743	0
chr11	6572281	6572592	H9_polyA+.11263	0	.	6572281	6572592	0	1	311	0
chr11	6634677	6635018	brain_AmbionMAQC.11046	0	.	6634677	6635018	0	1	341	0
chr11	6640808	6641316	BT474_Burge_Thompson.7657	0	.	6640808	6641316	0	1	508	0
chr11	6643993	6644838	REMC_MyoepithelialBreast.24257	0	.	6643993	6644838	0	1	845	0
chr11	6644242	6645149	B_cells_Cheung.49183	0	.	6644242	6645149	0	1	907	0
chr11	6648815	6649186	B_cells_Cheung.49186	0	.	6648815	6649186	0	1	371	0
chr11	6666375	6668046	B_cells_Cheung.49196	0	.	6666375	6668046	0	1	1671	0
chr11	6675226	6683081	B_Cells_Pritchard.828309	0	+	6675226	6683081	0	3	944,375,3176	0,2845,4679
chr11	6679885	6683083	B_cells_Cheung.49209	0	.	6679885	6683083	0	1	3198	0
chr11	6680946	6682444	H1_polyA+.28553	0	.	6680946	6682444	0	1	1498	0
chr11	6687413	6689274	B_cells_Cheung.49210	0	.	6687413	6689274	0	1	1861	0
chr11	6687473	6689225	CD4_Plagnol_resting.15487	0	.	6687473	6689225	0	1	1752	0
chr11	6687567	6689217	CD4_Plagnol_activated.15923	0	.	6687567	6689217	0	1	1650	0
chr11	6688052	6689051	H1_polyA+.28555	0	.	6688052	6689051	0	1	999	0
chr11	6690081	6690949	prostate_carcinoma.25216	0	.	6690081	6690949	0	1	868	0
chr11	6690138	6690931	lymph_node_Burge.11922	0	.	6690138	6690931	0	1	793	0
chr11	6690198	6690819	H1_polyA+.28556	0	.	6690198	6690819	0	1	621	0
chr11	6690218	6690910	prostate_normal.14627	0	.	6690218	6690910	0	1	692	0
chr11	6701346	6703155	B_Cells_Pritchard.828329	0	.	6701346	6703155	0	1	1809	0
chr11	6710913	6724301	B_Cells_Pritchard.828339	0	+	6710913	6724301	0	2	1623,2198	0,11190
chr11	6711535	6724261	prostate_normal.14631	0	-	6711535	6724261	0	2	413,106	0,12620
chr11	6723535	6724204	spleen_Raymond.51256	0	.	6723535	6724204	0	1	669	0
chr11	6723576	6724847	H1_polyA+.28561	0	.	6723576	6724847	0	1	1271	0
chr11	6723643	6723981	lung_Raymond.24446	0	.	6723643	6723981	0	1	338	0
chr11	6731258	6732592	H1_polyA+.28564	0	.	6731258	6732592	0	1	1334	0
chr11	6732116	6732693	B_cells_Cheung.49217	0	.	6732116	6732693	0	1	577	0
chr11	6968529	6971433	B_Cells_Pritchard.829137	0	.	6968529	6971433	0	1	2904	0
chr11	6968640	6969471	B_cells_Cheung.49341	0	.	6968640	6969471	0	1	831	0
chr11	6968641	6973431	MIP101.17274	0	.	6968641	6973431	0	1	4790	0
chr11	6968687	6969554	K562.11739	0	.	6968687	6969554	0	1	867	0
chr11	6968983	6969518	H9_polyA+.11288	0	.	6968983	6969518	0	1	535	0
chr11	6973534	6974503	MIP101.17275	0	.	6973534	6974503	0	1	969	0
chr11	7117611	7118180	B_Cells_Pritchard.829573	0	.	7117611	7118180	0	1	569	0
chr11	7117617	7118088	B_cells_Cheung.49375	0	.	7117617	7118088	0	1	471	0
chr11	7449200	7450625	REMC_LuminalBreast.26307	0	.	7449200	7450625	0	1	1425	0
chr11	7449472	7450109	prostate_normal.14655	0	.	7449472	7450109	0	1	637	0
chr11	7449865	7450223	H9_polyA+.11306	0	.	7449865	7450223	0	1	358	0
chr11	7449868	7450568	H1_polyA+.28644	0	.	7449868	7450568	0	1	700	0
chr11	7451224	7452785	B_cells_Cheung.49659	0	.	7451224	7452785	0	1	1561	0
chr11	7638591	7638908	REMC_LuminalBreast.26443	0	.	7638591	7638908	0	1	317	0
chr11	7639181	7639519	REMC_BreastStem.13491	0	.	7639181	7639519	0	1	338	0
chr11	7640390	7640764	REMC_LuminalBreast.26446	0	.	7640390	7640764	0	1	374	0
chr11	7658750	7659769	REMC_LuminalBreast.26447	0	.	7658750	7659769	0	1	1019	0
chr11	7659884	7661757	REMC_LuminalBreast.26448	0	.	7659884	7661757	0	1	1873	0
chr11	7702217	7705485	REMC_MyoepithelialBreast.24304	0	+	7702217	7705485	0	2	530,1035	0,2233
chr11	7704299	7705485	REMC_MyoepithelialBreast.24305	0	.	7704299	7705485	0	1	1186	0
chr11	7946211	7947677	H1_polyA+.28684	0	.	7946211	7947677	0	1	1466	0
chr11	7975491	7977613	HIT000014563	0	-	7975491	7977613	0	1	2122	0
chr11	7976828	7977533	brain_AmbionMAQC.11036	0	.	7976828	7977533	0	1	705	0
chr11	7977262	7978678	T47D_Burge_Thompson.6897	0	.	7977262	7978678	0	1	1416	0
chr11	7977355	7978709	MDAMB231_Thompson.5533	0	.	7977355	7978709	0	1	1354	0
chr11	7977360	7979874	MDAMB468_Thompson.6320	0	.	7977360	7979874	0	1	2514	0
chr11	7977360	7979821	MCF7_Burge_Thompson.7464	0	.	7977360	7979821	0	1	2461	0
chr11	7977413	7978607	BT20_Thompson.5380	0	.	7977413	7978607	0	1	1194	0
chr11	7977605	7978918	K562.11752	0	.	7977605	7978918	0	1	1313	0
chr11	7977733	7978905	brain_AmbionMAQC.11037	0	.	7977733	7978905	0	1	1172	0
chr11	7980523	7982016	REMC_LuminalBreast.26344	0	.	7980523	7982016	0	1	1493	0
chr11	7980709	7982771	REMC_MyoepithelialBreast.24347	0	.	7980709	7982771	0	1	2062	0
chr11	7980773	7981341	B_Cells_Pritchard.831293	0	.	7980773	7981341	0	1	568	0
chr11	7980896	7981483	REMC_BreastStem.13416	0	.	7980896	7981483	0	1	587	0
chr11	7987910	7988651	REMC_BreastStem.13421	0	.	7987910	7988651	0	1	741	0
chr11	7991721	7992657	REMC_MyoepithelialBreast.24351	0	.	7991721	7992657	0	1	936	0
chr11	8261957	8262362	A549_Myers.19261	0	.	8261957	8262362	0	1	405	0
chr11	8279960	8291327	pHIT000109971	0	+	8279960	8291327	0	2	48,330	0,11037
chr11	8295333	8307146	H1_polyA+.28710	0	.	8295333	8307146	0	1	11813	0
chr11	8296792	8297445	B_cells_Cheung.49446	0	.	8296792	8297445	0	1	653	0
chr11	8297474	8298396	prostate_normal.14702	0	.	8297474	8298396	0	1	922	0
chr11	8297588	8299140	H9_polyA+.11340	0	.	8297588	8299140	0	1	1552	0
chr11	8298094	8299758	B_Cells_Pritchard.832013	0	.	8298094	8299758	0	1	1664	0
chr11	8298999	8301455	prostate_carcinoma.25342	0	.	8298999	8301455	0	1	2456	0
chr11	8299187	8299742	prostate_normal.14703	0	.	8299187	8299742	0	1	555	0
chr11	8299943	8300829	H9_polyA+.11342	0	.	8299943	8300829	0	1	886	0
chr11	8300434	8300809	B_cells_Cheung.49450	0	.	8300434	8300809	0	1	375	0
chr11	8301574	8303533	B_cells_Cheung.49452	0	.	8301574	8303533	0	1	1959	0
chr11	8303636	8304392	B_cells_Cheung.49453	0	.	8303636	8304392	0	1	756	0
chr11	8303738	8304134	B_Cells_Pritchard.832041	0	.	8303738	8304134	0	1	396	0
chr11	8304220	8304873	H9_polyA+.11346	0	.	8304220	8304873	0	1	653	0
chr11	8304469	8305082	prostate_carcinoma.25345	0	.	8304469	8305082	0	1	613	0
chr11	8304501	8305279	B_cells_Cheung.49454	0	.	8304501	8305279	0	1	778	0
chr11	8304502	8305184	B_Cells_Pritchard.832045	0	.	8304502	8305184	0	1	682	0
chr11	8306050	8306931	B_cells_Cheung.49456	0	.	8306050	8306931	0	1	881	0
chr11	8306344	8306796	H9_polyA+.11348	0	.	8306344	8306796	0	1	452	0
chr11	8307255	8310068	H1_polyA+.28711	0	.	8307255	8310068	0	1	2813	0
chr11	8308229	8309500	H9_polyA+.11349	0	.	8308229	8309500	0	1	1271	0
chr11	8308928	8310084	B_Cells_Pritchard.832059	0	.	8308928	8310084	0	1	1156	0
chr11	8308930	8309919	B_cells_Cheung.49460	0	.	8308930	8309919	0	1	989	0
chr11	8310145	8311406	B_cells_Cheung.49461	0	.	8310145	8311406	0	1	1261	0
chr11	8310222	8311578	B_Cells_Pritchard.832061	0	.	8310222	8311578	0	1	1356	0
chr11	8310224	8313737	H1_polyA+.28712	0	.	8310224	8313737	0	1	3513	0
chr11	8311687	8313277	B_Cells_Pritchard.832063	0	.	8311687	8313277	0	1	1590	0
chr11	8312970	8313355	A549_Myers.19265	0	.	8312970	8313355	0	1	385	0
chr11	8336982	8339534	H1_polyA+.28713	0	.	8336982	8339534	0	1	2552	0
chr11	8339663	8340471	H1_polyA+.28714	0	.	8339663	8340471	0	1	808	0
chr11	8341506	8343299	H1_polyA+.28715	0	.	8341506	8343299	0	1	1793	0
chr11	8342061	8342484	B_cells_Cheung.49466	0	.	8342061	8342484	0	1	423	0
chr11	8345258	8346259	H1_polyA+.28716	0	.	8345258	8346259	0	1	1001	0
chr11	8346974	8348123	H1_polyA+.28717	0	.	8346974	8348123	0	1	1149	0
chr11	8350523	8351891	H1_polyA+.28719	0	.	8350523	8351891	0	1	1368	0
chr11	8360455	8362014	H1_polyA+.28720	0	.	8360455	8362014	0	1	1559	0
chr11	8583800	8584419	REMC_LuminalBreast.26383	0	.	8583800	8584419	0	1	619	0
chr11	8584533	8587768	REMC_LuminalBreast.26384	0	.	8584533	8587768	0	1	3235	0
chr11	8657628	8659201	melanoma_Garraway_short_term_cultures.16591	0	-	8657628	8659201	0	2	309,1178	0,395
chr11	8657937	8659201	melanoma_Garraway_short_term_cultures.16592	0	.	8657937	8659201	0	1	1264	0
chr11	8658581	8659162	H1_polyA+.28891	0	.	8658581	8659162	0	1	581	0
chr11	8912711	8914167	B_cells_Cheung.49615	0	.	8912711	8914167	0	1	1456	0
chr11	8912749	8914205	H1_polyA+.28822	0	.	8912749	8914205	0	1	1456	0
chr11	8922958	8923634	MIP101.17346	0	.	8922958	8923634	0	1	676	0
chr11	8923117	8923733	B_cells_Cheung.49621	0	.	8923117	8923733	0	1	616	0
chr11	8943865	8955467	REMC_LuminalBreast.26479	0	.	8943865	8955467	0	1	11602	0
chr11	8943896	8946283	MIP101.17353	0	.	8943896	8946283	0	1	2387	0
chr11	8944604	8946284	melanoma_Garraway_short_term_cultures.16624	0	.	8944604	8946284	0	1	1680	0
chr11	8944617	8946271	liver_polyA+.34534	0	.	8944617	8946271	0	1	1654	0
chr11	8944659	8946281	prostate_normal.14746	0	.	8944659	8946281	0	1	1622	0
chr11	8946443	8953506	H1_polyA+.28833	0	.	8946443	8953506	0	1	7063	0
chr11	8946751	8951801	REMC_BreastStem.13455	0	.	8946751	8951801	0	1	5050	0
chr11	8946770	8954946	REMC_MyoepithelialBreast.24420	0	.	8946770	8954946	0	1	8176	0
chr11	8947772	8948713	K562.11776	0	.	8947772	8948713	0	1	941	0
chr11	8990868	8996254	REMC_MyoepithelialBreast.24496	0	.	8990868	8996254	0	1	5386	0
chr11	8992705	8994110	REMC_LuminalBreast.26457	0	.	8992705	8994110	0	1	1405	0
chr11	8992867	8995324	prostate_normal.14753	0	.	8992867	8995324	0	1	2457	0
chr11	9245506	9253978	REMC_LuminalBreast.26495	0	.	9245506	9253978	0	1	8472	0
chr11	9251889	9253809	REMC_MyoepithelialBreast.24479	0	.	9251889	9253809	0	1	1920	0
chr11	9298475	9300168	B_Cells_Pritchard.835107	0	+	9298475	9300168	0	2	326,239	0,1454
chr11	9299847	9300152	B_cells_Cheung.49696	0	.	9299847	9300152	0	1	305	0
chr11	9299855	9300195	H1_polyA+.28872	0	.	9299855	9300195	0	1	340	0
chr11	9340844	9343545	REMC_MyoepithelialBreast.24491	0	.	9340844	9343545	0	1	2701	0
chr11	9341465	9342624	REMC_LuminalBreast.26510	0	.	9341465	9342624	0	1	1159	0
chr11	9341500	9342449	REMC_BreastStem.13505	0	.	9341500	9342449	0	1	949	0
chr11	9341800	9342619	B_cells_Cheung.49699	0	.	9341800	9342619	0	1	819	0
chr11	9341881	9342662	B_Cells_Pritchard.835233	0	-	9341881	9342662	0	1	781	0
chr11	9342320	9342789	A549_Myers.19362	0	.	9342320	9342789	0	1	469	0
chr11	9427339	9430569	REMC_MyoepithelialBreast.24566	0	.	9427339	9430569	0	1	3230	0
chr11	9427745	9430508	REMC_BreastStem.13565	0	.	9427745	9430508	0	1	2763	0
chr11	9428083	9428824	H1_polyA+.28923	0	.	9428083	9428824	0	1	741	0
chr11	9430752	9437019	REMC_MyoepithelialBreast.24567	0	.	9430752	9437019	0	1	6267	0
chr11	9509125	9509715	A549_Myers.19366	0	.	9509125	9509715	0	1	590	0
chr11	9509259	9509709	B_cells_Cheung.49780	0	.	9509259	9509709	0	1	450	0
chr11	9510521	9513054	REMC_LuminalBreast.26588	0	.	9510521	9513054	0	1	2533	0
chr11	9513943	9515086	REMC_BreastStem.13539	0	.	9513943	9515086	0	1	1143	0
chr11	9515803	9517866	REMC_LuminalBreast.26589	0	.	9515803	9517866	0	1	2063	0
chr11	9515827	9517540	REMC_MyoepithelialBreast.24570	0	.	9515827	9517540	0	1	1713	0
chr11	9517643	9536265	REMC_MyoepithelialBreast.24571	0	+	9517643	9536265	0	2	512,2037	0,16585
chr11	9531757	9536220	REMC_LuminalBreast.26594	0	.	9531757	9536220	0	1	4463	0
chr11	9534125	9535614	REMC_BreastStem.13542	0	.	9534125	9535614	0	1	1489	0
chr11	9534250	9535457	B_Cells_Pritchard.835357	0	.	9534250	9535457	0	1	1207	0
chr11	9534575	9535398	B_cells_Cheung.49783	0	.	9534575	9535398	0	1	823	0
chr11	9574774	9582567	REMC_LuminalBreast.26606	0	+	9574774	9582567	0	2	546,3451	0,4342
chr11	9577594	9582567	REMC_LuminalBreast.26607	0	.	9577594	9582567	0	1	4973	0
chr11	9578298	9580170	REMC_MyoepithelialBreast.24578	0	.	9578298	9580170	0	1	1872	0
chr11	9578738	9579632	B_cells_Cheung.49789	0	.	9578738	9579632	0	1	894	0
chr11	9580492	9580919	REMC_MyoepithelialBreast.24579	0	.	9580492	9580919	0	1	427	0
chr11	9587475	9598966	B_cells_Cheung.49791	0	+	9587475	9598966	0	2	122,1042	0,10449
chr11	9588865	9596897	REMC_LuminalBreast.26597	0	.	9588865	9596897	0	1	8032	0
chr11	9590042	9592245	REMC_MyoepithelialBreast.24586	0	.	9590042	9592245	0	1	2203	0
chr11	9590925	9592163	REMC_BreastStem.13552	0	.	9590925	9592163	0	1	1238	0
chr11	9591542	9592232	B_cells_Cheung.49795	0	.	9591542	9592232	0	1	690	0
chr11	9592311	9593983	B_cells_Cheung.49796	0	.	9592311	9593983	0	1	1672	0
chr11	9594771	9595448	B_cells_Cheung.49799	0	.	9594771	9595448	0	1	677	0
chr11	9595645	9597527	REMC_MyoepithelialBreast.24589	0	.	9595645	9597527	0	1	1882	0
chr11	9597043	9597502	H1_polyA+.28953	0	.	9597043	9597502	0	1	459	0
chr11	9732361	9734586	H1_polyA+.29444	0	.	9732361	9734586	0	1	2225	0
chr11	9732678	9743659	Rinn_00019572	0	-	9732678	9743659	0	4	1828,330,78,181	0,2013,3210,10800
chr11	9732816	9734533	melanoma_Garraway_short_term_cultures.16698	0	.	9732816	9734533	0	1	1717	0
chr11	9733251	9736287	ENST00000525154	0	-	9733251	9736287	0	2	1770,398	0,2638
chr11	9733251	9736287	HIT000096395	0	-	9733251	9736287	0	2	1770,398	0,2638
chr11	9733352	9735456	HepG2_Caltech_ENCODE.9156	0	.	9733352	9735456	0	1	2104	0
chr11	9733354	9735073	MDAMB231_Thompson.5601	0	.	9733354	9735073	0	1	1719	0
chr11	9733392	9735055	prostate_carcinoma.25459	0	.	9733392	9735055	0	1	1663	0
chr11	9733704	9734479	A549_Myers.19383	0	.	9733704	9734479	0	1	775	0
chr11	9733819	9734631	T47D_Burge_Thompson.7004	0	.	9733819	9734631	0	1	812	0
chr11	9733970	9734460	MB435_Burge.10303	0	.	9733970	9734460	0	1	490	0
chr11	9734365	9735015	BT20_Thompson.5435	0	.	9734365	9735015	0	1	650	0
chr11	9735891	9739260	B_Cells_Pritchard.836009	0	.	9735891	9739260	0	1	3369	0
chr11	9736038	9737207	A549_Myers.19385	0	.	9736038	9737207	0	1	1169	0
chr11	9736191	9736947	prostate_carcinoma.25460	0	.	9736191	9736947	0	1	756	0
chr11	9736864	9739291	REMC_LuminalBreast.27119	0	.	9736864	9739291	0	1	2427	0
chr11	9737285	9737686	H1_rRNA-depleted_UCSD_REMC.22197	0	.	9737285	9737686	0	1	401	0
chr11	9737458	9739193	melanoma_Garraway_short_term_cultures.16699	0	.	9737458	9739193	0	1	1735	0
chr11	9737552	9738301	HeLa_polyA+_Chen.9022	0	.	9737552	9738301	0	1	749	0
chr11	9737862	9738212	A549_Myers.19387	0	.	9737862	9738212	0	1	350	0
chr11	9738404	9738720	A549_Myers.19388	0	.	9738404	9738720	0	1	316	0
chr11	9739397	9741166	B_cells_Cheung.50936	0	.	9739397	9741166	0	1	1769	0
chr11	9739530	9741169	CD4_Plagnol_activated.16075	0	.	9739530	9741169	0	1	1639	0
chr11	9739534	9740887	REMC_MyoepithelialBreast.24700	0	.	9739534	9740887	0	1	1353	0
chr11	9739553	9741981	MIP101.17413	0	.	9739553	9741981	0	1	2428	0
chr11	9739554	9740063	melanoma_Garraway_short_term_cultures.16700	0	.	9739554	9740063	0	1	509	0
chr11	9739566	9741112	B_Cells_Pritchard.836011	0	.	9739566	9741112	0	1	1546	0
chr11	9740947	9743868	REMC_MyoepithelialBreast.24701	0	.	9740947	9743868	0	1	2921	0
chr11	9741227	9742836	B_Cells_Pritchard.836013	0	.	9741227	9742836	0	1	1609	0
chr11	9741250	9743173	B_cells_Cheung.50937	0	.	9741250	9743173	0	1	1923	0
chr11	9741819	9743216	melanoma_Garraway_short_term_cultures.16701	0	.	9741819	9743216	0	1	1397	0
chr11	9743927	9749110	REMC_MyoepithelialBreast.24702	0	.	9743927	9749110	0	1	5183	0
chr11	9743959	9745066	MIP101.17414	0	.	9743959	9745066	0	1	1107	0
chr11	9744186	9745353	melanoma_Garraway_short_term_cultures.16702	0	.	9744186	9745353	0	1	1167	0
chr11	9744305	9745938	B_cells_Cheung.50940	0	.	9744305	9745938	0	1	1633	0
chr11	9747223	9748933	B_cells_Cheung.50943	0	.	9747223	9748933	0	1	1710	0
chr11	9747367	9748764	B_Cells_Pritchard.836031	0	.	9747367	9748764	0	1	1397	0
chr11	10272426	10280809	Rinn_00019230	0	+	10272426	10280809	0	2	765,670	0,7713
chr11	10278695	10280940	prostate_carcinoma.25549	0	.	10278695	10280940	0	1	2245	0
chr11	10279980	10280933	B_Cells_Pritchard.837397	0	.	10279980	10280933	0	1	953	0
chr11	10280050	10281265	B_cells_Cheung.49964	0	.	10280050	10281265	0	1	1215	0
chr11	10280172	10282175	melanoma_Garraway_short_term_cultures.16727	0	.	10280172	10282175	0	1	2003	0
chr11	10280504	10281088	H9_polyA+.11439	0	.	10280504	10281088	0	1	584	0
chr11	10280537	10280892	A549_Myers.19430	0	.	10280537	10280892	0	1	355	0
chr11	10280552	10281091	HeLa_polyA-_Chen.4731	0	.	10280552	10281091	0	1	539	0
chr11	10280779	10281827	ENST00000526906	0	-	10280779	10281827	0	2	394,409	0,639
chr11	10688224	10689004	H1_polyA+.29063	0	.	10688224	10689004	0	1	780	0
chr11	10699952	10700440	A549_Myers.19454	0	.	10699952	10700440	0	1	488	0
chr11	10761742	10766615	REMC_MyoepithelialBreast.25779	0	.	10761742	10766615	0	1	4873	0
chr11	10761907	10764303	REMC_LuminalBreast.26690	0	.	10761907	10764303	0	1	2396	0
chr11	10762416	10764946	REMC_BreastStem.14300	0	.	10762416	10764946	0	1	2530	0
chr11	10763797	10764314	B_cells_Cheung.50096	0	.	10763797	10764314	0	1	517	0
chr11	10768167	10770105	REMC_BreastStem.14303	0	.	10768167	10770105	0	1	1938	0
chr11	10768321	10770306	REMC_LuminalBreast.26693	0	.	10768321	10770306	0	1	1985	0
chr11	10768540	10769067	B_Cells_Pritchard.838715	0	.	10768540	10769067	0	1	527	0
chr11	10769999	10770640	prostate_carcinoma.25865	0	.	10769999	10770640	0	1	641	0
chr11	10770026	10771534	B_Cells_Pritchard.838723	0	.	10770026	10771534	0	1	1508	0
chr11	10770163	10772433	REMC_BreastStem.14298	0	.	10770163	10772433	0	1	2270	0
chr11	10770410	10772506	REMC_LuminalBreast.26694	0	.	10770410	10772506	0	1	2096	0
chr11	10770444	10770970	A549_Myers.19465	0	.	10770444	10770970	0	1	526	0
chr11	10843443	10888581	Rinn_00019234	0	+	10843443	10888581	0	2	7,4005	0,41133
chr11	10876902	10877234	A549_Myers.19468	0	.	10876902	10877234	0	1	332	0
chr11	10877261	10885119	B_cells_Cheung.50168	0	+	10877261	10885119	0	2	152,542	0,7316
chr11	10884572	10885063	MIP101.17502	0	.	10884572	10885063	0	1	491	0
chr11	10884580	10886732	B_Cells_Pritchard.839061	0	.	10884580	10886732	0	1	2152	0
chr11	10884582	10885199	K562.11868	0	.	10884582	10885199	0	1	617	0
chr11	10884590	10888478	prostate_carcinoma.25597	0	.	10884590	10888478	0	1	3888	0
chr11	10884637	10892875	prostate_carcinoma.25598	0	-	10884637	10892875	0	2	3166,64	0,8174
chr11	10884746	10886334	ZR751_Thompson.6147	0	.	10884746	10886334	0	1	1588	0
chr11	10887523	10887921	prostate_normal.14847	0	.	10887523	10887921	0	1	398	0
chr11	10889613	10892202	prostate_carcinoma.25600	0	.	10889613	10892202	0	1	2589	0
chr11	10891197	10892188	melanoma_Garraway_short_term_cultures.16765	0	.	10891197	10892188	0	1	991	0
chr11	10904867	10906071	Rinn_00019236	0	+	10904867	10906071	0	2	138,836	0,368
chr11	10908505	10909391	prostate_carcinoma.25602	0	.	10908505	10909391	0	1	886	0
chr11	10908559	10910187	prostate_normal.14851	0	.	10908559	10910187	0	1	1628	0
chr11	10908605	10909395	MIP101.17506	0	.	10908605	10909395	0	1	790	0
chr11	10908785	10909374	ZR751_Thompson.6148	0	.	10908785	10909374	0	1	589	0
chr11	10909495	10910878	prostate_carcinoma.25604	0	.	10909495	10910878	0	1	1383	0
chr11	10909595	10909895	BT474_Burge_Thompson.7791	0	.	10909595	10909895	0	1	300	0
chr11	10909911	10910894	H1_polyA+.29111	0	.	10909911	10910894	0	1	983	0
chr11	10910131	10910475	T47D_Burge_Thompson.7038	0	.	10910131	10910475	0	1	344	0
chr11	11045921	11046497	A549_Myers.19473	0	.	11045921	11046497	0	1	576	0
chr11	11123464	11134656	CD4_Plagnol_resting.15659	0	-	11123464	11134656	0	2	8917,113	0,11079
chr11	11123464	11132789	CD4_Plagnol_resting.15660	0	.	11123464	11132789	0	1	9325	0
chr11	11123598	11127657	CD4_Plagnol_activated.16112	0	.	11123598	11127657	0	1	4059	0
chr11	11127741	11129113	CD4_Plagnol_activated.16113	0	.	11127741	11129113	0	1	1372	0
chr11	11127871	11128447	CD4_Snyder.19538	0	.	11127871	11128447	0	1	576	0
chr11	11128105	11128419	A549_Myers.19474	0	.	11128105	11128419	0	1	314	0
chr11	11128539	11128966	B_cells_Cheung.50191	0	.	11128539	11128966	0	1	427	0
chr11	11145893	11146590	B_cells_Cheung.50177	0	.	11145893	11146590	0	1	697	0
chr11	11145903	11146525	B_Cells_Pritchard.839897	0	.	11145903	11146525	0	1	622	0
chr11	11153498	11154203	B_cells_Cheung.50197	0	.	11153498	11154203	0	1	705	0
chr11	11155181	11155914	B_Cells_Pritchard.839949	0	.	11155181	11155914	0	1	733	0
chr11	11157992	11161689	B_cells_Cheung.50198	0	+	11157992	11161689	0	2	135,1240	0,2457
chr11	11162884	11163421	B_cells_Cheung.50201	0	.	11162884	11163421	0	1	537	0
chr11	11217020	11217582	B_cells_Cheung.50206	0	.	11217020	11217582	0	1	562	0
chr11	11219337	11220072	REMC_MyoepithelialBreast.24680	0	.	11219337	11220072	0	1	735	0
chr11	11219765	11220256	B_cells_Cheung.50208	0	.	11219765	11220256	0	1	491	0
chr11	11220346	11223291	REMC_LuminalBreast.26756	0	.	11220346	11223291	0	1	2945	0
chr11	11220871	11222984	Rinn_00019575	0	-	11220871	11222984	0	2	838,107	0,2006
chr11	11223881	11224809	REMC_MyoepithelialBreast.24683	0	.	11223881	11224809	0	1	928	0
chr11	11224789	11225226	B_Cells_Pritchard.840135	0	.	11224789	11225226	0	1	437	0
chr11	11610640	11639906	H1_polyA+.29118	0	+	11610640	11639906	0	2	3376,79	0,29187
chr11	11612331	11612921	K562.11873	0	.	11612331	11612921	0	1	590	0
chr11	11678464	11680244	prostate_carcinoma.25640	0	.	11678464	11680244	0	1	1780	0
chr11	11760291	11762464	K562.11879	0	.	11760291	11762464	0	1	2173	0
chr11	11776561	11777413	K562.11885	0	.	11776561	11777413	0	1	852	0
chr11	11778342	11780310	K562.11886	0	.	11778342	11780310	0	1	1968	0
chr11	12008997	12039908	ENST00000531559	0	+	12008997	12039908	0	2	56,3252	0,27659
chr11	12008997	12039908	HIT000047591	0	+	12008997	12039908	0	2	56,3252	0,27659
chr11	12009545	12010267	REMC_BreastStem.13679	0	.	12009545	12010267	0	1	722	0
chr11	12009812	12010288	B_cells_Cheung.50271	0	.	12009812	12010288	0	1	476	0
chr11	12022124	12024875	REMC_MyoepithelialBreast.24902	0	.	12022124	12024875	0	1	2751	0
chr11	12044127	12044572	A549_Myers.19543	0	.	12044127	12044572	0	1	445	0
chr11	12047095	12058453	REMC_MyoepithelialBreast.24905	0	.	12047095	12058453	0	1	11358	0
chr11	12047095	12058453	REMC_MyoepithelialBreast.24906	0	-	12047095	12058453	0	2	609,8739	0,2619
chr11	12052894	12053776	MCF10A_Thompson.5536	0	.	12052894	12053776	0	1	882	0
chr11	12052947	12053733	REMC_LuminalBreast.26752	0	.	12052947	12053733	0	1	786	0
chr11	12061122	12062956	REMC_MyoepithelialBreast.24908	0	.	12061122	12062956	0	1	1834	0
chr11	12063484	12064028	A549_Myers.19550	0	.	12063484	12064028	0	1	544	0
chr11	12247071	12247880	REMC_LuminalBreast.26887	0	.	12247071	12247880	0	1	809	0
chr11	12247959	12249470	REMC_LuminalBreast.26888	0	.	12247959	12249470	0	1	1511	0
chr11	12248376	12249399	prostate_carcinoma.25712	0	.	12248376	12249399	0	1	1023	0
chr11	12248494	12248829	A549_Myers.19579	0	.	12248494	12248829	0	1	335	0
chr11	12249470	12252487	REMC_LuminalBreast.26889	0	.	12249470	12252487	0	1	3017	0
chr11	12250132	12251636	prostate_carcinoma.25713	0	.	12250132	12251636	0	1	1504	0
chr11	12252002	12252314	IMR90_UCSD_REMC.12435	0	-	12252002	12252314	0	1	312	0
chr11	12253041	12253794	A549_Myers.19581	0	.	12253041	12253794	0	1	753	0
chr11	12346879	12347878	REMC_MyoepithelialBreast.24949	0	.	12346879	12347878	0	1	999	0
chr11	12515442	12516624	melanoma_Garraway_short_term_cultures.16811	0	.	12515442	12516624	0	1	1182	0
chr11	12515585	12516341	brain_AmbionMAQC.11215	0	.	12515585	12516341	0	1	756	0
chr11	12515909	12516662	prostate_normal.14918	0	.	12515909	12516662	0	1	753	0
chr11	12521237	12522000	REMC_BreastStem.13765	0	.	12521237	12522000	0	1	763	0
chr11	12521820	12528867	REMC_LuminalBreast.26911	0	.	12521820	12528867	0	1	7047	0
chr11	12525048	12527730	REMC_BreastStem.13766	0	.	12525048	12527730	0	1	2682	0
chr11	12533657	12535497	REMC_BreastStem.13769	0	.	12533657	12535497	0	1	1840	0
chr11	12533674	12540021	REMC_LuminalBreast.26913	0	.	12533674	12540021	0	1	6347	0
chr11	12588200	12589558	REMC_MyoepithelialBreast.24982	0	.	12588200	12589558	0	1	1358	0
chr11	12588297	12588710	BT474_Burge_Thompson.7834	0	.	12588297	12588710	0	1	413	0
chr11	12588318	12588635	B_Cells_Pritchard.844079	0	.	12588318	12588635	0	1	317	0
chr11	12591767	12592719	REMC_MyoepithelialBreast.24983	0	.	12591767	12592719	0	1	952	0
chr11	12620847	12621284	HepG2_Caltech_ENCODE.9192	0	.	12620847	12621284	0	1	437	0
chr11	12643659	12644008	HeLa_polyA+_Chen.9130	0	.	12643659	12644008	0	1	349	0
chr11	12926440	12927599	melanoma_Garraway_short_term_cultures.16844	0	.	12926440	12927599	0	1	1159	0
chr11	12929208	12938548	REMC_LuminalBreast.26915	0	.	12929208	12938548	0	1	9340	0
chr11	12934330	12941690	K562.12817	0	.	12934330	12941690	0	1	7360	0
chr11	12935171	12964392	MeWo_Garraway.8738	0	-	12935171	12964392	0	2	5715,230	0,28991
chr11	12935171	12941609	MeWo_Garraway.8739	0	.	12935171	12941609	0	1	6438	0
chr11	12937733	12941133	HeLa_polyA+_Chen.8977	0	.	12937733	12941133	0	1	3400	0
chr11	12939329	12962318	khalil_346	0	.	12939329	12962318	0	7	1789,574,2118,55,1487,533,24	0,11657,12554,15442,19002,22127,22965
chr11	12939938	12941672	REMC_LuminalBreast.26917	0	.	12939938	12941672	0	1	1734	0
chr11	12940466	12940951	HeLa_Bartel_WT_12hr.8645	0	.	12940466	12940951	0	1	485	0
chr11	12940481	12941025	prostate_carcinoma.25795	0	.	12940481	12941025	0	1	544	0
chr11	12940632	12967670	ENST00000527945	0	-	12940632	12967670	0	3	254,107,92	0,2598,26946
chr11	12940639	12941071	B_Cells_Pritchard.845155	0	.	12940639	12941071	0	1	432	0
chr11	12944736	12945157	HeLa_polyA+_Chen.8981	0	.	12944736	12945157	0	1	421	0
chr11	12947808	12960982	REMC_MyoepithelialBreast.25082	0	.	12947808	12960982	0	1	13174	0
chr11	12947808	12962366	REMC_MyoepithelialBreast.25081	0	-	12947808	12962366	0	2	11224,18	0,14540
chr11	12949457	12950213	HeLa_polyA+_Chen.8986	0	.	12949457	12950213	0	1	756	0
chr11	12951864	12967715	K562.12806	0	-	12951864	12967715	0	2	7258,137	0,15714
chr11	12952052	12959069	HeLa_polyA+_Chen.8988	0	.	12952052	12959069	0	1	7017	0
chr11	12952241	12967646	Rinn_00019579	0	-	12952241	12967646	0	2	6791,69	0,15336
chr11	12952883	12954005	HepG2_Caltech_ENCODE.9205	0	.	12952883	12954005	0	1	1122	0
chr11	12952950	12954517	HeLa_Bartel_miR-155_12hr.8609	0	.	12952950	12954517	0	1	1567	0
chr11	12952952	12953821	HeLa_Bartel_WT_12hr.8652	0	.	12952952	12953821	0	1	869	0
chr11	12953115	12956224	REMC_LuminalBreast.26922	0	.	12953115	12956224	0	1	3109	0
chr11	12957657	12967671	HIT000003906	0	+	12957657	12967671	0	2	1465,93	0,9921
chr11	12962768	12968966	REMC_MyoepithelialBreast.25083	0	.	12962768	12968966	0	1	6198	0
chr11	12992795	12995975	REMC_LuminalBreast.26928	0	.	12992795	12995975	0	1	3180	0
chr11	12993279	12994388	H1_polyA+.29229	0	.	12993279	12994388	0	1	1109	0
chr11	13005800	13006927	REMC_LuminalBreast.26933	0	.	13005800	13006927	0	1	1127	0
chr11	13011692	13015639	REMC_MyoepithelialBreast.25101	0	.	13011692	13015639	0	1	3947	0
chr11	13020601	13021144	REMC_MyoepithelialBreast.25104	0	.	13020601	13021144	0	1	543	0
chr11	13031416	13032675	REMC_MyoepithelialBreast.25107	0	.	13031416	13032675	0	1	1259	0
chr11	13050247	13052193	REMC_MyoepithelialBreast.25109	0	.	13050247	13052193	0	1	1946	0
chr11	13060620	13064297	REMC_MyoepithelialBreast.25110	0	.	13060620	13064297	0	1	3677	0
chr11	13065702	13066365	REMC_MyoepithelialBreast.25113	0	.	13065702	13066365	0	1	663	0
chr11	13066557	13067305	REMC_MyoepithelialBreast.25114	0	.	13066557	13067305	0	1	748	0
chr11	13082220	13083608	REMC_MyoepithelialBreast.25089	0	.	13082220	13083608	0	1	1388	0
chr11	13082375	13083013	B_Cells_Pritchard.845525	0	.	13082375	13083013	0	1	638	0
chr11	13238427	13239218	REMC_MyoepithelialBreast.25093	0	.	13238427	13239218	0	1	791	0
chr11	13239291	13239873	REMC_MyoepithelialBreast.25094	0	.	13239291	13239873	0	1	582	0
chr11	13249302	13249904	REMC_MyoepithelialBreast.25095	0	.	13249302	13249904	0	1	602	0
chr11	13442574	13443543	B_Cells_Pritchard.846447	0	.	13442574	13443543	0	1	969	0
chr11	13822984	13848739	ENST00000525381	0	-	13822984	13848739	0	4	145,40,52,69	0,23775,24477,25686
chr11	14249413	14250056	liver_polyA+.35178	0	.	14249413	14250056	0	1	643	0
chr11	14249445	14249830	H1_rRNA-depleted_UCSD_REMC.22453	0	.	14249445	14249830	0	1	385	0
chr11	14254143	14254986	MDAMB231_Thompson.5652	0	.	14254143	14254986	0	1	843	0
chr11	14358571	14360483	REMC_MyoepithelialBreast.25745	0	.	14358571	14360483	0	1	1912	0
chr11	14359127	14359676	A549_Myers.19706	0	.	14359127	14359676	0	1	549	0
chr11	14362474	14363363	REMC_MyoepithelialBreast.25747	0	.	14362474	14363363	0	1	889	0
chr11	14362548	14364494	REMC_LuminalBreast.27029	0	.	14362548	14364494	0	1	1946	0
chr11	14365415	14367537	REMC_MyoepithelialBreast.25750	0	.	14365415	14367537	0	1	2122	0
chr11	14399006	14400716	REMC_LuminalBreast.27035	0	.	14399006	14400716	0	1	1710	0
chr11	14399533	14400480	REMC_BreastStem.13948	0	.	14399533	14400480	0	1	947	0
chr11	14400604	14400935	A549_Myers.19707	0	.	14400604	14400935	0	1	331	0
chr11	14414915	14415932	REMC_BreastStem.13953	0	.	14414915	14415932	0	1	1017	0
chr11	14416895	14418101	B_Cells_Pritchard.848703	0	.	14416895	14418101	0	1	1206	0
chr11	14416999	14418177	B_cells_Cheung.50530	0	.	14416999	14418177	0	1	1178	0
chr11	14417312	14418098	CD4_Plagnol_activated.16213	0	.	14417312	14418098	0	1	786	0
chr11	14872818	14873488	prostate_carcinoma.25894	0	.	14872818	14873488	0	1	670	0
chr11	14874921	14876657	CD4_Plagnol_resting.16062	0	.	14874921	14876657	0	1	1736	0
chr11	15530741	15539078	H1_polyA+.29402	0	+	15530741	15539078	0	2	294,3739	0,4598
chr11	15534416	15539078	H1_polyA+.29401	0	.	15534416	15539078	0	1	4662	0
chr11	15536875	15537228	H1_rRNA-depleted_UCSD_REMC.22549	0	.	15536875	15537228	0	1	353	0
chr11	15537455	15538199	H9_polyA+.11631	0	.	15537455	15538199	0	1	744	0
chr11	15539522	15582287	H1_polyA+.29403	0	+	15539522	15582287	0	6	828,70,95,521,79,13088	0,5620,24307,27146,27861,29677
chr11	15546627	15547080	H1_polyA+.29410	0	.	15546627	15547080	0	1	453	0
chr11	15547821	15549443	H1_polyA+.29411	0	.	15547821	15549443	0	1	1622	0
chr11	15566712	15574218	H9_polyA+.11639	0	+	15566712	15574218	0	2	254,5067	0,2439
chr11	15567935	15574218	H9_polyA+.11638	0	.	15567935	15574218	0	1	6283	0
chr11	15568067	15582287	H1_polyA+.29404	0	.	15568067	15582287	0	1	14220	0
chr11	15571936	15572806	NEC_from_H9.18844	0	.	15571936	15572806	0	1	870	0
chr11	15572920	15574110	NEC_from_H9.18846	0	.	15572920	15574110	0	1	1190	0
chr11	15578587	15579326	H9_polyA+.11637	0	.	15578587	15579326	0	1	739	0
chr11	15622006	15683490	ENST00000532242	0	+	15622006	15683490	0	3	151,126,194	0,60448,61290
chr11	15627031	15628178	H1_polyA+.29413	0	.	15627031	15628178	0	1	1147	0
chr11	15628073	15628599	A549_Myers.19748	0	.	15628073	15628599	0	1	526	0
chr11	15639778	15640963	MIP101.17696	0	.	15639778	15640963	0	1	1185	0
chr11	15682217	15683496	H1_polyA+.29415	0	+	15682217	15683496	0	2	363,200	0,1079
chr11	15833728	15838665	melanoma_Garraway_short_term_cultures.16942	0	+	15833728	15838665	0	3	111,177,2246	0,1905,2691
chr11	15836409	15838882	melanoma_Garraway_short_term_cultures.16943	0	.	15836409	15838882	0	1	2473	0
chr11	15837569	15838817	MeI_Garraway.4490	0	.	15837569	15838817	0	1	1248	0
chr11	15919282	15919869	A549_Myers.19749	0	.	15919282	15919869	0	1	587	0
chr11	16740115	16743242	REMC_LuminalBreast.27354	0	.	16740115	16743242	0	1	3127	0
chr11	16742281	16742872	REMC_BreastStem.13869	0	.	16742281	16742872	0	1	591	0
chr11	16742965	16743765	REMC_MyoepithelialBreast.25205	0	.	16742965	16743765	0	1	800	0
chr11	16743398	16745350	REMC_LuminalBreast.27355	0	.	16743398	16745350	0	1	1952	0
chr11	16748480	16750101	H1_polyA+.29419	0	.	16748480	16750101	0	1	1621	0
chr11	16748917	16749695	MIP101.17706	0	.	16748917	16749695	0	1	778	0
chr11	16749389	16750374	prostate_carcinoma.25921	0	.	16749389	16750374	0	1	985	0
chr11	17017845	17022146	H1_polyA+.29635	0	.	17017845	17022146	0	1	4301	0
chr11	17018908	17020271	REMC_LuminalBreast.27456	0	.	17018908	17020271	0	1	1363	0
chr11	17031543	17040647	REMC_LuminalBreast.27357	0	.	17031543	17040647	0	1	9104	0
chr11	17038331	17040903	H1_polyA+.29564	0	.	17038331	17040903	0	1	2572	0
chr11	17041068	17041977	H1_polyA+.29565	0	.	17041068	17041977	0	1	909	0
chr11	17044881	17046652	B_cells_Cheung.50679	0	.	17044881	17046652	0	1	1771	0
chr11	17359528	17361654	HIT000043530	0	+	17359528	17361654	0	1	2126	0
chr11	17360057	17361617	REMC_BreastStem.13900	0	.	17360057	17361617	0	1	1560	0
chr11	17360301	17361724	H1_polyA+.29639	0	.	17360301	17361724	0	1	1423	0
chr11	17360470	17361741	REMC_MyoepithelialBreast.25245	0	.	17360470	17361741	0	1	1271	0
chr11	17368496	17369626	REMC_MyoepithelialBreast.25249	0	.	17368496	17369626	0	1	1130	0
chr11	17650079	17650401	B_Cells_Pritchard.856435	0	.	17650079	17650401	0	1	322	0
chr11	17673400	17673888	testes_Burge.13385	0	.	17673400	17673888	0	1	488	0
chr11	17709220	17709599	A549_Myers.19899	0	.	17709220	17709599	0	1	379	0
chr11	18024248	18024783	B_cells_Cheung.50819	0	.	18024248	18024783	0	1	535	0
chr11	18024587	18030261	REMC_LuminalBreast.27476	0	.	18024587	18030261	0	1	5674	0
chr11	18026473	18030678	REMC_MyoepithelialBreast.25260	0	.	18026473	18030678	0	1	4205	0
chr11	18027835	18029603	B_cells_Cheung.50823	0	.	18027835	18029603	0	1	1768	0
chr11	18032819	18033975	B_cells_Cheung.50826	0	.	18032819	18033975	0	1	1156	0
chr11	18032831	18033803	REMC_LuminalBreast.27478	0	.	18032831	18033803	0	1	972	0
chr11	18032927	18033621	REMC_MyoepithelialBreast.25262	0	.	18032927	18033621	0	1	694	0
chr11	18033333	18033700	B_Cells_Pritchard.857657	0	.	18033333	18033700	0	1	367	0
chr11	18039195	18045844	B_Cells_Pritchard.857671	0	+	18039195	18045844	0	2	5008,1158	0,5491
chr11	18039286	18044207	prostate_carcinoma.26076	0	.	18039286	18044207	0	1	4921	0
chr11	18040952	18044741	REMC_MyoepithelialBreast.25264	0	.	18040952	18044741	0	1	3789	0
chr11	18041204	18044337	B_cells_Cheung.50830	0	.	18041204	18044337	0	1	3133	0
chr11	18254213	18255055	B_Cells_Pritchard.858263	0	+	18254213	18255055	0	1	842	0
chr11	18357939	18359440	REMC_BreastStem.13995	0	.	18357939	18359440	0	1	1501	0
chr11	18357998	18359486	REMC_MyoepithelialBreast.25476	0	.	18357998	18359486	0	1	1488	0
chr11	18360851	18362072	REMC_LuminalBreast.27515	0	.	18360851	18362072	0	1	1221	0
chr11	18360855	18361413	REMC_MyoepithelialBreast.25477	0	.	18360855	18361413	0	1	558	0
chr11	18361404	18361807	A549_Myers.19945	0	.	18361404	18361807	0	1	403	0
chr11	18368084	18371504	REMC_LuminalBreast.27517	0	.	18368084	18371504	0	1	3420	0
chr11	18567890	18569318	BT474_Burge_Thompson.7969	0	.	18567890	18569318	0	1	1428	0
chr11	18567977	18568771	melanoma_Garraway_short_term_cultures.17109	0	.	18567977	18568771	0	1	794	0
chr11	18568260	18568680	NEC_from_H9.19021	0	.	18568260	18568680	0	1	420	0
chr11	18570078	18571377	HeLa_polyA+_Chen.9199	0	.	18570078	18571377	0	1	1299	0
chr11	18572364	18574494	REMC_LuminalBreast.27574	0	.	18572364	18574494	0	1	2130	0
chr11	18572393	18573127	REMC_MyoepithelialBreast.25347	0	.	18572393	18573127	0	1	734	0
chr11	18572416	18576881	B_cells_Cheung.51080	0	-	18572416	18576881	0	2	1962,162	0,4303
chr11	18572558	18573468	REMC_BreastStem.13992	0	.	18572558	18573468	0	1	910	0
chr11	18572901	18576369	H1_polyA+.29765	0	.	18572901	18576369	0	1	3468	0
chr11	18572911	18574112	HeLa_polyA+_Chen.9200	0	.	18572911	18574112	0	1	1201	0
chr11	18572939	18573590	BT474_Burge_Thompson.7970	0	.	18572939	18573590	0	1	651	0
chr11	18572970	18574809	MeWo_Garraway.8878	0	.	18572970	18574809	0	1	1839	0
chr11	18573113	18575434	prostate_normal.15148	0	.	18573113	18575434	0	1	2321	0
chr11	18573113	18581371	prostate_normal.15149	0	-	18573113	18581371	0	2	1108,394	0,7864
chr11	18573179	18574999	REMC_MyoepithelialBreast.25348	0	.	18573179	18574999	0	1	1820	0
chr11	18573233	18574689	H9_polyA+.11749	0	.	18573233	18574689	0	1	1456	0
chr11	18573237	18574498	XR_039132	0	-	18573237	18574498	0	2	1125,136	0,1125
chr11	18573357	18575523	melanoma_Garraway_short_term_cultures.17111	0	.	18573357	18575523	0	1	2166	0
chr11	18573975	18574335	T47D_Burge_Thompson.7159	0	.	18573975	18574335	0	1	360	0
chr11	18574008	18574668	NEC_from_H9.19025	0	.	18574008	18574668	0	1	660	0
chr11	18574557	18575561	REMC_LuminalBreast.27575	0	.	18574557	18575561	0	1	1004	0
chr11	18574740	18575296	H9_polyA+.11750	0	.	18574740	18575296	0	1	556	0
chr11	18577110	18578443	REMC_BreastStem.13993	0	.	18577110	18578443	0	1	1333	0
chr11	18578911	18579477	H9_polyA+.11753	0	.	18578911	18579477	0	1	566	0
chr11	18578915	18579524	CD4_Plagnol_activated.16451	0	.	18578915	18579524	0	1	609	0
chr11	18578938	18579659	prostate_normal.15146	0	.	18578938	18579659	0	1	721	0
chr11	18578940	18579579	MIP101.17880	0	.	18578940	18579579	0	1	639	0
chr11	18579067	18580684	MCF7_Burge_Thompson.7713	0	.	18579067	18580684	0	1	1617	0
chr11	19068667	19069107	B_Cells_Pritchard.860275	0	.	19068667	19069107	0	1	440	0
chr11	19156483	19157065	B_Cells_Pritchard.860471	0	.	19156483	19157065	0	1	582	0
chr11	19224054	19225581	MIP101.17906	0	.	19224054	19225581	0	1	1527	0
chr11	19224596	19225445	B_Cells_Pritchard.860655	0	.	19224596	19225445	0	1	849	0
chr11	19231939	19233395	B_cells_Cheung.51110	0	.	19231939	19233395	0	1	1456	0
chr11	19232764	19233375	MIP101.17909	0	.	19232764	19233375	0	1	611	0
chr11	19273975	19275850	B_Cells_Pritchard.860791	0	.	19273975	19275850	0	1	1875	0
chr11	19286311	19287302	B_Cells_Pritchard.860833	0	.	19286311	19287302	0	1	991	0
chr11	19289608	19291043	B_Cells_Pritchard.860847	0	.	19289608	19291043	0	1	1435	0
chr11	19290313	19290869	MIP101.17913	0	.	19290313	19290869	0	1	556	0
chr11	19290348	19290880	melanoma_Garraway_short_term_cultures.17131	0	.	19290348	19290880	0	1	532	0
chr11	19323237	19323869	A549_Myers.20021	0	.	19323237	19323869	0	1	632	0
chr11	20103816	20104945	melanoma_Garraway_short_term_cultures.17185	0	.	20103816	20104945	0	1	1129	0
chr11	20105622	20106623	melanoma_Garraway_short_term_cultures.17186	0	.	20105622	20106623	0	1	1001	0
chr11	20105877	20109339	REMC_BreastStem.14027	0	+	20105877	20109339	0	2	330,912	0,2550
chr11	20109343	20115327	REMC_MyoepithelialBreast.25885	0	.	20109343	20115327	0	1	5984	0
chr11	20109343	20115327	REMC_MyoepithelialBreast.25884	0	+	20109343	20115327	0	2	1239,4653	0,1331
chr11	20109553	20111461	REMC_BreastStem.14029	0	.	20109553	20111461	0	1	1908	0
chr11	20109851	20111650	HIT000022680	0	+	20109851	20111650	0	1	1799	0
chr11	20109855	20111545	melanoma_Garraway_short_term_cultures.17189	0	.	20109855	20111545	0	1	1690	0
chr11	20110098	20110680	B_Cells_Pritchard.863279	0	.	20110098	20110680	0	1	582	0
chr11	20110397	20111934	REMC_LuminalBreast.27619	0	.	20110397	20111934	0	1	1537	0
chr11	20114078	20115313	melanoma_Garraway_short_term_cultures.17192	0	.	20114078	20115313	0	1	1235	0
chr11	20114173	20115299	REMC_LuminalBreast.27620	0	.	20114173	20115299	0	1	1126	0
chr11	20114216	20115266	REMC_BreastStem.14030	0	.	20114216	20115266	0	1	1050	0
chr11	20115433	20127832	REMC_MyoepithelialBreast.25365	0	.	20115433	20127832	0	1	12399	0
chr11	20141537	20141880	A549_Myers.20067	0	.	20141537	20141880	0	1	343	0
chr11	22511057	22515498	H1_polyA+.29887	0	.	22511057	22515498	0	1	4441	0
chr11	22518778	22524900	H1_polyA+.29889	0	.	22518778	22524900	0	1	6122	0
chr11	22550413	22551403	H1_polyA+.29890	0	.	22550413	22551403	0	1	990	0
chr11	22809338	22810033	B_cells_Cheung.51334	0	.	22809338	22810033	0	1	695	0
chr11	22844348	22845050	B_Cells_Pritchard.868915	0	.	22844348	22845050	0	1	702	0
chr11	22844698	22845466	MIP101.17968	0	.	22844698	22845466	0	1	768	0
chr11	22879757	22880569	prostate_carcinoma.26243	0	.	22879757	22880569	0	1	812	0
chr11	22912761	22913438	B_Cells_Pritchard.869153	0	.	22912761	22913438	0	1	677	0
chr11	22913779	22914294	B_cells_Cheung.51422	0	.	22913779	22914294	0	1	515	0
chr11	22996880	22997575	B_cells_Cheung.51427	0	.	22996880	22997575	0	1	695	0
chr11	23098720	23100390	B_cells_Cheung.51438	0	.	23098720	23100390	0	1	1670	0
chr11	23098867	23099996	prostate_carcinoma.26248	0	.	23098867	23099996	0	1	1129	0
chr11	23098901	23099963	B_Cells_Pritchard.869747	0	.	23098901	23099963	0	1	1062	0
chr11	23143021	23144908	ENST00000530576	0	+	23143021	23144908	0	4	194,144,121,51	0,290,1593,1836
chr11	23179783	23183869	prostate_carcinoma.26258	0	.	23179783	23183869	0	1	4086	0
chr11	23181122	23181580	B_cells_Cheung.51449	0	.	23181122	23181580	0	1	458	0
chr11	23609922	23610665	prostate_carcinoma.26270	0	.	23609922	23610665	0	1	743	0
chr11	23657683	23658944	prostate_carcinoma.26278	0	.	23657683	23658944	0	1	1261	0
chr11	23659023	23659527	prostate_carcinoma.26279	0	.	23659023	23659527	0	1	504	0
chr11	23691093	23691396	prostate_carcinoma.26284	0	.	23691093	23691396	0	1	303	0
chr11	23767372	23768525	prostate_carcinoma.26301	0	.	23767372	23768525	0	1	1153	0
chr11	24021571	24031798	prostate_carcinoma.26326	0	+	24021571	24031798	0	2	334,2726	0,7501
chr11	24028542	24031798	prostate_carcinoma.26325	0	.	24028542	24031798	0	1	3256	0
chr11	24032796	24033941	prostate_carcinoma.26330	0	.	24032796	24033941	0	1	1145	0
chr11	25605276	25606532	melanoma_Garraway_short_term_cultures.17238	0	.	25605276	25606532	0	1	1256	0
chr11	25648135	25649286	MeWo_Garraway.8933	0	.	25648135	25649286	0	1	1151	0
chr11	25864121	25864722	MeWo_Garraway.8953	0	.	25864121	25864722	0	1	601	0
chr11	25864972	25865744	melanoma_Garraway_short_term_cultures.17259	0	.	25864972	25865744	0	1	772	0
chr11	25865035	25865717	MeWo_Garraway.8954	0	.	25865035	25865717	0	1	682	0
chr11	25936626	25937619	melanoma_Garraway_short_term_cultures.17268	0	.	25936626	25937619	0	1	993	0
chr11	25987133	25988399	melanoma_Garraway_short_term_cultures.17277	0	.	25987133	25988399	0	1	1266	0
chr11	25993940	25994695	MeWo_Garraway.8997	0	.	25993940	25994695	0	1	755	0
chr11	26026900	26028498	melanoma_Garraway_short_term_cultures.17283	0	.	26026900	26028498	0	1	1598	0
chr11	27110231	27110988	MCF10A_Thompson.5674	0	.	27110231	27110988	0	1	757	0
chr11	27118725	27121287	REMC_LuminalBreast.27659	0	.	27118725	27121287	0	1	2562	0
chr11	27127135	27128969	H1_polyA+.29950	0	.	27127135	27128969	0	1	1834	0
chr11	27169232	27169539	B_Cells_Pritchard.876547	0	.	27169232	27169539	0	1	307	0
chr11	27176774	27180781	H1_polyA+.29962	0	.	27176774	27180781	0	1	4007	0
chr11	27183165	27183531	B_cells_Cheung.51539	0	.	27183165	27183531	0	1	366	0
chr11	27185189	27185904	H1_polyA+.29965	0	.	27185189	27185904	0	1	715	0
chr11	27185400	27185897	B_cells_Cheung.51540	0	.	27185400	27185897	0	1	497	0
chr11	27188651	27193342	H1_polyA+.29967	0	.	27188651	27193342	0	1	4691	0
chr11	27188661	27190378	B_cells_Cheung.51543	0	.	27188661	27190378	0	1	1717	0
chr11	27193758	27194488	B_cells_Cheung.51547	0	.	27193758	27194488	0	1	730	0
chr11	27211739	27212290	B_Cells_Pritchard.876705	0	.	27211739	27212290	0	1	551	0
chr11	27212203	27214398	MIP101.17988	0	-	27212203	27214398	0	2	573,254	0,1941
chr11	27267808	27271417	REMC_LuminalBreast.27666	0	.	27267808	27271417	0	1	3609	0
chr11	27268635	27271430	H1_polyA+.29973	0	.	27268635	27271430	0	1	2795	0
chr11	27268814	27271207	B_cells_Cheung.51560	0	.	27268814	27271207	0	1	2393	0
chr11	27269094	27272697	HepG2_Caltech_ENCODE.9463	0	.	27269094	27272697	0	1	3603	0
chr11	27269317	27271370	BT474_Burge_Thompson.8009	0	.	27269317	27271370	0	1	2053	0
chr11	27269649	27271397	prostate_carcinoma.26393	0	.	27269649	27271397	0	1	1748	0
chr11	27269649	27270980	MIP101.17991	0	.	27269649	27270980	0	1	1331	0
chr11	27282627	27283064	A549_Myers.20129	0	.	27282627	27283064	0	1	437	0
chr11	27295750	27297722	REMC_LuminalBreast.27672	0	.	27295750	27297722	0	1	1972	0
chr11	27298411	27299766	REMC_LuminalBreast.27673	0	.	27298411	27299766	0	1	1355	0
chr11	27307483	27308663	HeLa_polyA+_Chen.9248	0	.	27307483	27308663	0	1	1180	0
chr11	27307737	27308723	K562.12130	0	.	27307737	27308723	0	1	986	0
chr11	27308218	27308760	H9_polyA+.11840	0	.	27308218	27308760	0	1	542	0
chr11	27464000	27464990	REMC_MyoepithelialBreast.25801	0	.	27464000	27464990	0	1	990	0
chr11	27466630	27470920	H1_polyA+.30044	0	.	27466630	27470920	0	1	4290	0
chr11	27468225	27470978	B_Cells_Pritchard.877397	0	.	27468225	27470978	0	1	2753	0
chr11	27488662	27489861	B_Cells_Pritchard.877541	0	.	27488662	27489861	0	1	1199	0
chr11	27496714	27497755	B_cells_Cheung.51678	0	.	27496714	27497755	0	1	1041	0
chr11	27590554	27612023	H1_polyA+.90233	0	+	27590554	27612023	0	2	12010,587	0,20882
chr11	27590554	27607456	H1_polyA+.90232	0	.	27590554	27607456	0	1	16902	0
chr11	27590910	27602748	H9_polyA+.11853	0	+	27590910	27602748	0	2	162,8516	0,3322
chr11	27596147	27612674	Rinn_00020053	0	-	27596147	27612674	0	3	154,197,222	0,5924,16305
chr11	27596147	27612674	Rinn_00020054	0	-	27596147	27612674	0	3	158,197,222	0,5924,16305
chr11	27599528	27602635	H9_polyA-_Chen.3663	0	.	27599528	27602635	0	1	3107	0
chr11	27602208	27602648	B_cells_Cheung.51703	0	.	27602208	27602648	0	1	440	0
chr11	27604810	27605434	H1_rRNA-depleted_UCSD_REMC.23016	0	.	27604810	27605434	0	1	624	0
chr11	27604899	27605941	H9_polyA-_Chen.3656	0	.	27604899	27605941	0	1	1042	0
chr11	27611345	27612004	H9_polyA+.11859	0	.	27611345	27612004	0	2	258,350	0,309
chr11	28347085	28348502	B_cells_Cheung.51908	0	.	28347085	28348502	0	1	1417	0
chr11	28403069	28403756	REMC_MyoepithelialBreast.25539	0	.	28403069	28403756	0	1	687	0
chr11	28403256	28403881	B_Cells_Pritchard.880099	0	.	28403256	28403881	0	1	625	0
chr11	28405387	28407484	REMC_LuminalBreast.27749	0	.	28405387	28407484	0	1	2097	0
chr11	28426194	28429434	REMC_LuminalBreast.27754	0	.	28426194	28429434	0	1	3240	0
chr11	28458871	28461631	REMC_LuminalBreast.27756	0	.	28458871	28461631	0	1	2760	0
chr11	28482780	28483883	B_Cells_Pritchard.880403	0	.	28482780	28483883	0	1	1103	0
chr11	28503955	28504635	B_Cells_Pritchard.880485	0	.	28503955	28504635	0	1	680	0
chr11	28509076	28510315	REMC_LuminalBreast.27769	0	.	28509076	28510315	0	1	1239	0
chr11	28509380	28510280	REMC_MyoepithelialBreast.25540	0	.	28509380	28510280	0	1	900	0
chr11	28747899	28748903	MIP101.18099	0	.	28747899	28748903	0	1	1004	0
chr11	28748964	28749836	MIP101.18100	0	.	28748964	28749836	0	1	872	0
chr11	28861773	28862546	HeLa_polyA+_Chen.9273	0	.	28861773	28862546	0	1	773	0
chr11	30273174	30273958	B_Cells_Pritchard.883599	0	.	30273174	30273958	0	1	784	0
chr11	30273424	30274079	BT474_Burge_Thompson.8031	0	.	30273424	30274079	0	1	655	0
chr11	30316775	30317747	CD4_Plagnol_resting.16075	0	.	30316775	30317747	0	1	972	0
chr11	30337736	30341142	prostate_carcinoma.26478	0	-	30337736	30341142	0	3	958,207,1229	0,1631,2177
chr11	30665530	30675272	Rinn_00019602	0	-	30665530	30675272	0	3	958,116,165	0,7863,9577
chr11	32362109	32362772	B_cells_Cheung.52079	0	.	32362109	32362772	0	1	663	0
chr11	32362169	32362633	K562.12213	0	.	32362169	32362633	0	1	464	0
chr11	32363795	32364384	K562.12214	0	.	32363795	32364384	0	1	589	0
chr11	32413897	32415173	ENST00000459866	0	+	32413897	32415173	0	2	71,257	0,1019
chr11	32423683	32424656	K562.12225	0	.	32423683	32424656	0	1	973	0
chr11	32431399	32432709	prostate_carcinoma.26610	0	.	32431399	32432709	0	1	1310	0
chr11	32431457	32432176	MDAMB468_Thompson.6581	0	.	32431457	32432176	0	1	719	0
chr11	32775192	32777229	B_cells_Cheung.52190	0	.	32775192	32777229	0	1	2037	0
chr11	32775406	32776449	REMC_LuminalBreast.28010	0	.	32775406	32776449	0	1	1043	0
chr11	32784209	32784621	B_cells_Cheung.52194	0	.	32784209	32784621	0	1	412	0
chr11	32844060	32847685	REMC_LuminalBreast.28033	0	.	32844060	32847685	0	1	3625	0
chr11	32844069	32846277	REMC_MyoepithelialBreast.25633	0	.	32844069	32846277	0	1	2208	0
chr11	32848562	32853039	REMC_LuminalBreast.27987	0	.	32848562	32853039	0	1	4477	0
chr11	32851866	32853043	REMC_MyoepithelialBreast.25636	0	.	32851866	32853043	0	1	1177	0
chr11	32861411	32862451	REMC_LuminalBreast.27991	0	.	32861411	32862451	0	1	1040	0
chr11	32979196	32980927	REMC_MyoepithelialBreast.25655	0	.	32979196	32980927	0	1	1731	0
chr11	33142092	33143084	H1_polyA+.30444	0	.	33142092	33143084	0	1	992	0
chr11	33154489	33156845	B_cells_Cheung.52339	0	.	33154489	33156845	0	1	2356	0
chr11	33154522	33156506	H1_polyA+.30451	0	.	33154522	33156506	0	1	1984	0
chr11	33162685	33164554	H1_polyA+.30457	0	.	33162685	33164554	0	1	1869	0
chr11	33162694	33163502	B_cells_Cheung.52341	0	.	33162694	33163502	0	1	808	0
chr11	33170745	33171717	H1_polyA+.30460	0	.	33170745	33171717	0	1	972	0
chr11	33179117	33179486	B_cells_Cheung.52283	0	.	33179117	33179486	0	1	369	0
chr11	33185611	33186200	B_Cells_Pritchard.890237	0	.	33185611	33186200	0	1	589	0
chr11	33189209	33190346	H1_polyA+.30465	0	.	33189209	33190346	0	1	1137	0
chr11	33208830	33209588	B_cells_Cheung.52301	0	.	33208830	33209588	0	1	758	0
chr11	33230344	33230658	B_cells_Cheung.52309	0	.	33230344	33230658	0	1	314	0
chr11	33354147	33354570	MB435_Burge.10721	0	.	33354147	33354570	0	1	423	0
chr11	33667579	33668000	MB435_Burge.10785	0	.	33667579	33668000	0	1	421	0
chr11	33672838	33673371	B_cells_Cheung.52349	0	.	33672838	33673371	0	1	533	0
chr11	33673023	33673403	A549_Myers.20348	0	.	33673023	33673403	0	1	380	0
chr11	33674128	33675229	prostate_normal.15403	0	.	33674128	33675229	0	1	1101	0
chr11	33780603	33788623	pHIT000019030	0	-	33780603	33788623	0	4	117,181,63,62	0,5784,6831,7958
chr11	33786482	33788923	prostate_carcinoma.26679	0	.	33786482	33788923	0	1	2441	0
chr11	33807071	33807727	A549_Myers.20359	0	.	33807071	33807727	0	1	656	0
chr11	33833596	33833992	B_cells_Cheung.52489	0	.	33833596	33833992	0	1	396	0
chr11	33895021	33895595	B_cells_Cheung.52508	0	.	33895021	33895595	0	1	574	0
chr11	33913419	33914488	B_Cells_Pritchard.892459	0	.	33913419	33914488	0	1	1069	0
chr11	33914180	33914635	B_cells_Cheung.52517	0	.	33914180	33914635	0	1	455	0
chr11	34511136	34536047	ENST00000527984	0	-	34511136	34536047	0	3	153,108,128	0,11747,24783
chr11	34587883	34589270	prostate_carcinoma.26789	0	.	34587883	34589270	0	1	1387	0
chr11	34645673	34646224	prostate_carcinoma.26735	0	.	34645673	34646224	0	1	551	0
chr11	34658106	34664793	REMC_LuminalBreast.28162	0	.	34658106	34664793	0	1	6687	0
chr11	34662585	34664722	H1_polyA+.30511	0	.	34662585	34664722	0	1	2137	0
chr11	34670886	34696250	REMC_LuminalBreast.28163	0	.	34670886	34696250	0	1	25364	0
chr11	34679293	34711266	prostate_carcinoma.26742	0	+	34679293	34711266	0	3	845,541,859	0,13523,31114
chr11	34679302	34680144	prostate_normal.15464	0	.	34679302	34680144	0	1	842	0
chr11	34697181	34700743	REMC_LuminalBreast.28167	0	.	34697181	34700743	0	1	3562	0
chr11	34713158	34716185	REMC_LuminalBreast.28170	0	.	34713158	34716185	0	1	3027	0
chr11	34718504	34719200	REMC_LuminalBreast.28173	0	.	34718504	34719200	0	1	696	0
chr11	34719991	34721564	REMC_LuminalBreast.28175	0	.	34719991	34721564	0	1	1573	0
chr11	34735424	34738405	REMC_LuminalBreast.28181	0	.	34735424	34738405	0	1	2981	0
chr11	34735871	34738360	H1_polyA+.30522	0	.	34735871	34738360	0	1	2489	0
chr11	34745873	34749681	H1_polyA+.30524	0	.	34745873	34749681	0	1	3808	0
chr11	34748165	34749809	REMC_LuminalBreast.28184	0	.	34748165	34749809	0	1	1644	0
chr11	34750351	34759469	REMC_LuminalBreast.28185	0	.	34750351	34759469	0	1	9118	0
chr11	34756778	34759491	H1_polyA+.30527	0	.	34756778	34759491	0	1	2713	0
chr11	34774972	34779024	REMC_LuminalBreast.28192	0	.	34774972	34779024	0	1	4052	0
chr11	34792470	34797825	REMC_LuminalBreast.28195	0	.	34792470	34797825	0	1	5355	0
chr11	34799928	34800870	H1_polyA+.30542	0	.	34799928	34800870	0	1	942	0
chr11	34803935	34805416	H1_polyA+.30544	0	.	34803935	34805416	0	1	1481	0
chr11	34806266	34808269	H1_polyA+.30545	0	.	34806266	34808269	0	1	2003	0
chr11	34807268	34807886	prostate_carcinoma.26759	0	.	34807268	34807886	0	1	618	0
chr11	34826749	34827796	H1_polyA+.30550	0	.	34826749	34827796	0	1	1047	0
chr11	34999699	35000554	B_cells_Cheung.52660	0	.	34999699	35000554	0	1	855	0
chr11	35012794	35015364	B_cells_Cheung.52664	0	.	35012794	35015364	0	1	2570	0
chr11	35026235	35026746	REMC_BreastStem.14222	0	.	35026235	35026746	0	1	511	0
chr11	35028078	35045318	B_Cells_Pritchard.895177	0	-	35028078	35045318	0	9	1757,1244,2765,514,522,380,2088,194,515	0,2219,4898,7855,9031,9792,11015,15164,16725
chr11	35028078	35045393	B_Cells_Pritchard.895175	0	+	35028078	35045393	0	4	3691,3590,4297,1536	0,6587,11370,15779
chr11	35028399	35028917	CD4_Plagnol_activated.16670	0	.	35028399	35028917	0	1	518	0
chr11	35028757	35030700	REMC_BreastStem.14224	0	-	35028757	35030700	0	2	1078,403	0,1540
chr11	35028916	35030785	MDAMB468_Thompson.6642	0	.	35028916	35030785	0	1	1869	0
chr11	35029318	35030697	REMC_MyoepithelialBreast.25855	0	-	35029318	35030697	0	2	517,400	0,979
chr11	35030070	35030775	CD4_Plagnol_activated.16672	0	.	35030070	35030775	0	1	705	0
chr11	35030251	35030700	REMC_BreastStem.14225	0	.	35030251	35030700	0	1	449	0
chr11	35030263	35030747	CD4_Plagnol_resting.16214	0	.	35030263	35030747	0	1	484	0
chr11	35030299	35031026	REMC_LuminalBreast.28220	0	.	35030299	35031026	0	1	727	0
chr11	35032842	35043906	B_cells_Cheung.52661	0	.	35032842	35043906	0	1	11064	0
chr11	35040597	35041328	MDAMB468_Thompson.6643	0	.	35040597	35041328	0	1	731	0
chr11	35041085	35042103	CD4_Plagnol_activated.16677	0	.	35041085	35042103	0	1	1018	0
chr11	35058641	35059314	B_cells_Cheung.52674	0	.	35058641	35059314	0	1	673	0
chr11	35060389	35060772	A549_Myers.20450	0	.	35060389	35060772	0	1	383	0
chr11	35062186	35063499	B_cells_Cheung.52675	0	.	35062186	35063499	0	1	1313	0
chr11	35100484	35101198	B_cells_Cheung.52683	0	.	35100484	35101198	0	1	714	0
chr11	35103123	35103619	B_cells_Cheung.52685	0	.	35103123	35103619	0	1	496	0
chr11	35104018	35106031	B_cells_Cheung.52686	0	.	35104018	35106031	0	1	2013	0
chr11	35104273	35105980	B_Cells_Pritchard.895625	0	.	35104273	35105980	0	1	1707	0
chr11	35108659	35111485	B_Cells_Pritchard.895645	0	.	35108659	35111485	0	1	2826	0
chr11	35108982	35111284	REMC_MyoepithelialBreast.27306	0	.	35108982	35111284	0	1	2302	0
chr11	35109638	35111515	CD4_Plagnol_activated.16682	0	.	35109638	35111515	0	1	1877	0
chr11	35215628	35216598	REMC_BreastStem.14246	0	.	35215628	35216598	0	1	970	0
chr11	35594628	35595178	REMC_MyoepithelialBreast.25888	0	.	35594628	35595178	0	1	550	0
chr11	35789595	35796171	brain_AmbionMAQC.11626	0	.	35789595	35796171	0	1	6576	0
chr11	35789603	35814941	B_Cells_Pritchard.897189	0	+	35789603	35814941	0	2	7999,88	0,25250
chr11	35789631	35796041	CD4_Plagnol_resting.16226	0	.	35789631	35796041	0	1	6410	0
chr11	35790316	35791595	prostate_normal.15513	0	.	35790316	35791595	0	1	1279	0
chr11	35791251	35796107	CD4_Plagnol_activated.16696	0	.	35791251	35796107	0	1	4856	0
chr11	35791655	35796023	prostate_normal.15514	0	.	35791655	35796023	0	1	4368	0
chr11	35791904	35796020	K562.12390	0	.	35791904	35796020	0	1	4116	0
chr11	35791907	35796237	B_cells_Cheung.52732	0	.	35791907	35796237	0	1	4330	0
chr11	35792457	35796132	HIT000015919	0	+	35792457	35796132	0	1	3675	0
chr11	35792705	35795973	HeLa_polyA+_Chen.9390	0	.	35792705	35795973	0	1	3268	0
chr11	35794643	35795799	liver_polyA+.36667	0	.	35794643	35795799	0	1	1156	0
chr11	35794649	35796047	MCF10A_Thompson.5765	0	.	35794649	35796047	0	1	1398	0
chr11	35795367	35796100	T47D_Burge_Thompson.7312	0	.	35795367	35796100	0	1	733	0
chr11	35795398	35796000	A549_Myers.20489	0	.	35795398	35796000	0	1	602	0
chr11	35798491	35799766	REMC_BreastStem.14288	0	.	35798491	35799766	0	1	1275	0
chr11	35808630	35810475	REMC_LuminalBreast.28244	0	.	35808630	35810475	0	1	1845	0
chr11	35809373	35810523	REMC_MyoepithelialBreast.26140	0	.	35809373	35810523	0	1	1150	0
chr11	35814071	35820296	REMC_MyoepithelialBreast.26142	0	.	35814071	35820296	0	1	6225	0
chr11	35825156	35827136	REMC_MyoepithelialBreast.26145	0	.	35825156	35827136	0	1	1980	0
chr11	36212556	36214953	REMC_LuminalBreast.28265	0	.	36212556	36214953	0	1	2397	0
chr11	36215199	36218149	REMC_LuminalBreast.28266	0	.	36215199	36218149	0	1	2950	0
chr11	36219787	36220650	REMC_MyoepithelialBreast.26079	0	.	36219787	36220650	0	1	863	0
chr11	36236999	36238169	melanoma_Garraway_short_term_cultures.17614	0	.	36236999	36238169	0	1	1170	0
chr11	36237360	36238182	prostate_carcinoma.26894	0	.	36237360	36238182	0	1	822	0
chr11	36238381	36240315	REMC_LuminalBreast.28273	0	.	36238381	36240315	0	1	1934	0
chr11	36238919	36240471	melanoma_Garraway_short_term_cultures.17615	0	.	36238919	36240471	0	1	1552	0
chr11	36239038	36243898	REMC_MyoepithelialBreast.26084	0	.	36239038	36243898	0	1	4860	0
chr11	36239486	36240260	H1_polyA+.30729	0	.	36239486	36240260	0	1	774	0
chr11	36241776	36243161	REMC_BreastStem.14308	0	.	36241776	36243161	0	1	1385	0
chr11	36241852	36243622	H1_polyA+.30730	0	.	36241852	36243622	0	1	1770	0
chr11	36242203	36243572	REMC_LuminalBreast.28275	0	.	36242203	36243572	0	1	1369	0
chr11	36242370	36243431	melanoma_Garraway_short_term_cultures.17617	0	.	36242370	36243431	0	1	1061	0
chr11	36243964	36244709	MIP101.18402	0	.	36243964	36244709	0	1	745	0
chr11	36244003	36246196	REMC_MyoepithelialBreast.26085	0	.	36244003	36246196	0	1	2193	0
chr11	36244259	36245739	melanoma_Garraway_short_term_cultures.17618	0	.	36244259	36245739	0	1	1480	0
chr11	36444342	36445831	B_cells_Cheung.52810	0	.	36444342	36445831	0	1	1489	0
chr11	36445184	36446428	REMC_BreastStem.14313	0	.	36445184	36446428	0	1	1244	0
chr11	36445255	36446130	CD4_Snyder.20460	0	.	36445255	36446130	0	1	875	0
chr11	36445853	36446155	brain_AmbionMAQC.11642	0	.	36445853	36446155	0	1	302	0
chr11	36651676	36652084	H1_polyA+.30778	0	.	36651676	36652084	0	1	408	0
chr11	37821154	37821679	HeLa_Bartel_miR-1_12hr.8629	0	.	37821154	37821679	0	1	525	0
chr11	38845332	38845805	B_Cells_Pritchard.902925	0	.	38845332	38845805	0	1	473	0
chr11	38967121	38967677	B_Cells_Pritchard.903203	0	.	38967121	38967677	0	1	556	0
chr11	40088070	40090725	HIT000047314	0	-	40088070	40090725	0	1	2655	0
chr11	40089833	40090885	REMC_LuminalBreast.28295	0	.	40089833	40090885	0	1	1052	0
chr11	41828595	41839951	Rinn_00019281	0	+	41828595	41839951	0	4	150,297,228,126	0,5291,5857,11230
chr11	41828595	41837983	Rinn_00019280	0	+	41828595	41837983	0	4	150,297,228,130	0,5291,5857,9258
chr11	42161417	42217945	ENST00000525641	0	-	42161417	42217945	0	4	99,171,67,110	0,19042,54801,56418
chr11	42192920	42231838	ENST00000527757	0	-	42192920	42231838	0	5	192,67,117,71,99	0,23298,24915,26253,38819
chr11	42322717	42323095	B_cells_Cheung.52886	0	.	42322717	42323095	0	1	378	0
chr11	42765302	42765810	B_Cells_Pritchard.909767	0	.	42765302	42765810	0	1	508	0
chr11	43835822	43836321	brain_AmbionMAQC.11695	0	.	43835822	43836321	0	1	499	0
chr11	43835825	43836733	MDAMB231_Thompson.5917	0	.	43835825	43836733	0	1	908	0
chr11	43835828	43836220	MeWo_Garraway.9220	0	.	43835828	43836220	0	1	392	0
chr11	43835830	43836182	HeLa_polyA+_Chen.9443	0	.	43835830	43836182	0	1	352	0
chr11	43835832	43838505	melanoma_Garraway_short_term_cultures.17684	0	.	43835832	43838505	0	1	2673	0
chr11	43835844	43838458	MeI_Garraway.4666	0	.	43835844	43838458	0	1	2614	0
chr11	43840697	43841987	HeLa_polyA+_Chen.9447	0	.	43840697	43841987	0	1	1290	0
chr11	43840805	43843585	B_cells_Cheung.53029	0	.	43840805	43843585	0	1	2780	0
chr11	43841857	43843453	ZR751_Thompson.6422	0	.	43841857	43843453	0	1	1596	0
chr11	43841868	43843512	MeI_Garraway.4669	0	.	43841868	43843512	0	1	1644	0
chr11	43841881	43843580	prostate_normal.15602	0	.	43841881	43843580	0	1	1699	0
chr11	43841938	43842351	liver_polyA+.36843	0	.	43841938	43842351	0	1	413	0
chr11	43851158	43851596	B_Cells_Pritchard.913875	0	-	43851158	43851596	0	1	438	0
chr11	43899699	43901455	prostate_carcinoma.27018	0	.	43899699	43901455	0	1	1756	0
chr11	43899851	43900349	B_Cells_Pritchard.912021	0	.	43899851	43900349	0	1	498	0
chr11	43902412	43902935	A549_Myers.20590	0	.	43902412	43902935	0	1	523	0
chr11	43902680	43903137	brain_AmbionMAQC.11711	0	.	43902680	43903137	0	1	457	0
chr11	43924405	43926502	REMC_MyoepithelialBreast.26179	0	.	43924405	43926502	0	1	2097	0
chr11	43925640	43926019	ovary_Raymond.71966	0	.	43925640	43926019	0	1	379	0
chr11	43925662	43925970	adipose_Raymond.19532	0	.	43925662	43925970	0	1	308	0
chr11	43948234	43950964	REMC_BreastStem.14434	0	.	43948234	43950964	0	1	2730	0
chr11	43957211	43960333	REMC_BreastStem.14436	0	.	43957211	43960333	0	1	3122	0
chr11	43962647	43963945	REMC_BreastStem.14438	0	.	43962647	43963945	0	1	1298	0
chr11	44007134	44008010	REMC_BreastStem.14440	0	.	44007134	44008010	0	1	876	0
chr11	44063170	44065488	REMC_LuminalBreast.28409	0	.	44063170	44065488	0	1	2318	0
chr11	44064144	44064630	B_cells_Cheung.53058	0	.	44064144	44064630	0	1	486	0
chr11	44225507	44230099	MCF10A_Thompson.5813	0	.	44225507	44230099	0	1	4592	0
chr11	44225594	44228073	H9_polyA+.12157	0	.	44225594	44228073	0	1	2479	0
chr11	44225617	44227948	MDAMB231_Thompson.5937	0	.	44225617	44227948	0	1	2331	0
chr11	44225619	44228091	MDAMB468_Thompson.6766	0	.	44225619	44228091	0	1	2472	0
chr11	44225636	44227949	melanoma_Garraway_short_term_cultures.17708	0	.	44225636	44227949	0	1	2313	0
chr11	44225646	44226590	BT474_Burge_Thompson.8147	0	.	44225646	44226590	0	1	944	0
chr11	44225655	44228002	prostate_carcinoma.27103	0	.	44225655	44228002	0	1	2347	0
chr11	44225665	44227322	CD4_Plagnol_activated.16812	0	.	44225665	44227322	0	1	1657	0
chr11	44225757	44227330	ZR751_Thompson.6441	0	.	44225757	44227330	0	1	1573	0
chr11	44226712	44227948	BT474_Burge_Thompson.8148	0	.	44226712	44227948	0	1	1236	0
chr11	44231655	44235870	B_Cells_Pritchard.913005	0	.	44231655	44235870	0	1	4215	0
chr11	44233684	44235794	H1_polyA+.30949	0	.	44233684	44235794	0	1	2110	0
chr11	44234504	44235660	melanoma_Garraway_short_term_cultures.17712	0	.	44234504	44235660	0	1	1156	0
chr11	44234870	44235623	CD4_Plagnol_resting.16299	0	.	44234870	44235623	0	1	753	0
chr11	44235120	44235920	CD4_Plagnol_activated.16818	0	.	44235120	44235920	0	1	800	0
chr11	44291369	44318793	pHIT000110193	0	-	44291369	44318793	0	3	90,273,378	0,3289,27046
chr11	44294196	44294898	A549_Myers.20657	0	.	44294196	44294898	0	1	702	0
chr11	44323993	44324462	A549_Myers.20658	0	.	44323993	44324462	0	1	469	0
chr11	44482262	44483039	B_Cells_Pritchard.913629	0	.	44482262	44483039	0	1	777	0
chr11	44482450	44482981	BT474_Burge_Thompson.8163	0	.	44482450	44482981	0	1	531	0
chr11	44497449	44499055	Rinn_00019625	0	-	44497449	44499055	0	2	108,260	0,1346
chr11	44498328	44498908	BT474_Burge_Thompson.8164	0	.	44498328	44498908	0	1	580	0
chr11	44599210	44599834	BT20_Thompson.5739	0	.	44599210	44599834	0	1	624	0
chr11	44599212	44599836	BT474_Burge_Thompson.8167	0	.	44599212	44599836	0	1	624	0
chr11	44599273	44599828	brain_AmbionMAQC.11741	0	.	44599273	44599828	0	1	555	0
chr11	44601166	44602061	prostate_normal.15637	0	.	44601166	44602061	0	1	895	0
chr11	44601425	44602698	prostate_carcinoma.27061	0	.	44601425	44602698	0	1	1273	0
chr11	44601445	44601765	A549_Myers.20671	0	.	44601445	44601765	0	1	320	0
chr11	44605348	44606268	prostate_carcinoma.27063	0	.	44605348	44606268	0	1	920	0
chr11	44607868	44608303	prostate_carcinoma.27065	0	.	44607868	44608303	0	1	435	0
chr11	44609554	44611251	REMC_BreastStem.14470	0	.	44609554	44611251	0	1	1697	0
chr11	44609560	44612288	B_cells_Cheung.53218	0	.	44609560	44612288	0	1	2728	0
chr11	44609611	44611264	B_Cells_Pritchard.920721	0	+	44609611	44611264	0	1	1653	0
chr11	44609721	44611235	CD4_Plagnol_resting.16305	0	.	44609721	44611235	0	1	1514	0
chr11	44609758	44610750	prostate_carcinoma.27067	0	.	44609758	44610750	0	1	992	0
chr11	44612417	44614048	B_Cells_Pritchard.920729	0	+	44612417	44614048	0	1	1631	0
chr11	44612419	44613165	CD4_Plagnol_activated.16828	0	.	44612419	44613165	0	1	746	0
chr11	44612609	44613028	A549_Myers.20673	0	.	44612609	44613028	0	1	419	0
chr11	44613785	44614139	B_cells_Cheung.53220	0	.	44613785	44614139	0	1	354	0
chr11	44629710	44631700	REMC_LuminalBreast.28368	0	.	44629710	44631700	0	1	1990	0
chr11	44643382	44643700	B_cells_Cheung.53228	0	.	44643382	44643700	0	1	318	0
chr11	44643407	44644277	REMC_BreastStem.14472	0	.	44643407	44644277	0	1	870	0
chr11	44672988	44674427	ENST00000532748	0	-	44672988	44674427	0	2	708,81	0,1358
chr11	44941036	44941926	H1_polyA+.30967	0	.	44941036	44941926	0	1	890	0
chr11	44942987	44943891	H1_polyA+.30968	0	.	44942987	44943891	0	1	904	0
chr11	44952027	44956152	Rinn_00019077	0	+	44952027	44956152	0	4	507,99,95,539	0,894,3407,3586
chr11	44955623	44956036	A549_Myers.20694	0	.	44955623	44956036	0	1	413	0
chr11	44956364	44956850	BT474_Burge_Thompson.8170	0	.	44956364	44956850	0	1	486	0
chr11	44957328	44958327	prostate_normal.15654	0	.	44957328	44958327	0	1	999	0
chr11	44957448	44961217	prostate_carcinoma.27105	0	.	44957448	44961217	0	1	3769	0
chr11	44957498	44961241	BT474_Burge_Thompson.8171	0	.	44957498	44961241	0	1	3743	0
chr11	44957738	44958433	A549_Myers.20696	0	.	44957738	44958433	0	1	695	0
chr11	44958543	44959301	MIP101.18559	0	.	44958543	44959301	0	1	758	0
chr11	45026017	45029994	HIT000047634	0	-	45026017	45029994	0	1	3977	0
chr11	45204753	45206329	A549_Myers.20728	0	.	45204753	45206329	0	1	1576	0
chr11	45204761	45205087	NEC_from_H9.19753	0	.	45204761	45205087	0	1	326	0
chr11	45204898	45205324	liver_polyA+.36909	0	.	45204898	45205324	0	1	426	0
chr11	45205153	45206295	NEC_from_H9.19751	0	.	45205153	45206295	0	1	1142	0
chr11	45205719	45206347	CD4_Plagnol_activated.16876	0	.	45205719	45206347	0	1	628	0
chr11	45205738	45206051	heart_Burge.7847	0	.	45205738	45206051	0	1	313	0
chr11	45206454	45213224	HepG2_Caltech_ENCODE.9696	0	.	45206454	45213224	0	1	6770	0
chr11	45208274	45213392	brain_AmbionMAQC.11770	0	.	45208274	45213392	0	1	5118	0
chr11	45208311	45210009	BT474_Burge_Thompson.8200	0	.	45208311	45210009	0	1	1698	0
chr11	45208316	45213195	prostate_normal.15676	0	.	45208316	45213195	0	1	4879	0
chr11	45208317	45210271	H9_polyA+.12206	0	.	45208317	45210271	0	1	1954	0
chr11	45208317	45210281	BT20_Thompson.5743	0	.	45208317	45210281	0	1	1964	0
chr11	45208322	45211203	CD4_Plagnol_activated.16879	0	.	45208322	45211203	0	1	2881	0
chr11	45208323	45213148	B_Cells_Pritchard.915699	0	.	45208323	45213148	0	1	4825	0
chr11	45208323	45211323	NEC_from_H9.19756	0	.	45208323	45211323	0	1	3000	0
chr11	45208336	45211205	CD4_Plagnol_resting.16341	0	.	45208336	45211205	0	1	2869	0
chr11	45208361	45213151	A549_Myers.20733	0	.	45208361	45213151	0	1	4790	0
chr11	45208408	45210816	MCF7_Burge_Thompson.7909	0	.	45208408	45210816	0	1	2408	0
chr11	45208691	45211255	MCF10A_Thompson.5825	0	.	45208691	45211255	0	1	2564	0
chr11	45208863	45210057	HeLa_polyA+_Chen.9475	0	.	45208863	45210057	0	1	1194	0
chr11	45209229	45210216	B_cells_Cheung.53263	0	.	45209229	45210216	0	1	987	0
chr11	45210082	45210943	ZR751_Thompson.6455	0	.	45210082	45210943	0	1	861	0
chr11	45210116	45211215	HeLa_polyA+_Chen.9476	0	.	45210116	45211215	0	1	1099	0
chr11	45210271	45213233	H9_polyA+.12207	0	.	45210271	45213233	0	1	2962	0
chr11	45210271	45213233	H9_polyA+.12205	0	-	45210271	45213233	0	2	780,1695	0,1267
chr11	45210671	45213237	BT474_Burge_Thompson.8201	0	.	45210671	45213237	0	1	2566	0
chr11	45210716	45211550	B_cells_Cheung.53265	0	.	45210716	45211550	0	1	834	0
chr11	45210903	45211212	liver_polyA+.36913	0	.	45210903	45211212	0	1	309	0
chr11	45211263	45213232	CD4_Plagnol_activated.16880	0	.	45211263	45213232	0	1	1969	0
chr11	45211309	45213018	MCF7_Burge_Thompson.7914	0	.	45211309	45213018	0	1	1709	0
chr11	45211346	45213217	CD4_Plagnol_resting.16342	0	.	45211346	45213217	0	1	1871	0
chr11	45211505	45212937	MCF10A_Thompson.5826	0	.	45211505	45212937	0	1	1432	0
chr11	45211605	45212575	NEC_from_H9.19755	0	.	45211605	45212575	0	1	970	0
chr11	45211899	45212917	liver_polyA+.36915	0	.	45211899	45212917	0	1	1018	0
chr11	45212131	45213004	B_cells_Cheung.53267	0	.	45212131	45213004	0	1	873	0
chr11	45212493	45212907	breast_Burge.10383	0	.	45212493	45212907	0	1	414	0
chr11	45212498	45212926	testes_Burge.13865	0	.	45212498	45212926	0	1	428	0
chr11	45212684	45213156	NEC_from_H9.19757	0	.	45212684	45213156	0	1	472	0
chr11	45318171	45318531	A549_Myers.20736	0	.	45318171	45318531	0	1	360	0
chr11	45349522	45366635	HIT000043290	0	+	45349522	45366635	0	5	1445,233,204,83,633	0,7959,8539,15831,16480
chr11	45349522	45366635	Rinn_00019091	0	+	45349522	45366635	0	5	1445,234,205,84,634	0,7958,8538,15830,16479
chr11	45349523	45366635	ENST00000528390	0	+	45349523	45366635	0	5	1444,233,204,83,633	0,7958,8538,15830,16479
chr11	45349539	45350252	HIT000390428	0	+	45349539	45350252	0	1	713	0
chr11	45349592	45350097	XR_040386	0	+	45349592	45350097	0	1	505	0
chr11	45376285	45376987	brain_AmbionMAQC.11752	0	.	45376285	45376987	0	1	702	0
chr11	45418823	45419359	B_Cells_Pritchard.916295	0	.	45418823	45419359	0	1	536	0
chr11	45464987	45466641	brain_AmbionMAQC.11753	0	.	45464987	45466641	0	1	1654	0
chr11	45466902	45467898	brain_AmbionMAQC.11754	0	.	45466902	45467898	0	1	996	0
chr11	45504268	45506406	HIT000284719	0	+	45504268	45506406	0	1	2138	0
chr11	45504958	45506124	brain_AmbionMAQC.11760	0	.	45504958	45506124	0	1	1166	0
chr11	45774612	45776229	MCF7_Burge_Thompson.7958	0	.	45774612	45776229	0	1	1617	0
chr11	45821578	45822209	REMC_MyoepithelialBreast.26302	0	.	45821578	45822209	0	1	631	0
chr11	45886656	45887097	IMR90_UCSD_REMC.13184	0	+	45886656	45887097	0	1	441	0
chr11	45897282	45897806	B_Cells_Pritchard.917363	0	.	45897282	45897806	0	1	524	0
chr11	45898112	45898739	B_Cells_Pritchard.917365	0	.	45898112	45898739	0	1	627	0
chr11	46191963	46197757	Rinn_00019634	0	-	46191963	46197757	0	3	388,166,51	0,1889,5743
chr11	46215489	46216038	K562.12539	0	.	46215489	46216038	0	1	549	0
chr11	46215730	46216585	A549_Myers.20796	0	.	46215730	46216585	0	1	855	0
chr11	46215974	46216526	HeLa_polyA+_Chen.9491	0	.	46215974	46216526	0	1	552	0
chr11	46216501	46217794	K562.12540	0	.	46216501	46217794	0	1	1293	0
chr11	46216584	46218194	HeLa_polyA+_Chen.9492	0	.	46216584	46218194	0	1	1610	0
chr11	46217174	46217745	prostate_carcinoma.27227	0	.	46217174	46217745	0	1	571	0
chr11	46217274	46217795	A549_Myers.20797	0	.	46217274	46217795	0	1	521	0
chr11	46217325	46217966	H1_polyA+.31043	0	.	46217325	46217966	0	1	641	0
chr11	46250659	46251112	A549_Myers.20801	0	.	46250659	46251112	0	1	453	0
chr11	46299983	46304175	B_Cells_Pritchard.918493	0	-	46299983	46304175	0	3	900,390,531	0,1849,3661
chr11	46300948	46302137	REMC_LuminalBreast.28487	0	.	46300948	46302137	0	1	1189	0
chr11	46300966	46301624	B_cells_Cheung.53312	0	.	46300966	46301624	0	1	658	0
chr11	46300983	46301532	prostate_normal.15736	0	.	46300983	46301532	0	1	549	0
chr11	46300995	46302219	REMC_BreastStem.14549	0	.	46300995	46302219	0	1	1224	0
chr11	46301027	46301683	B_Cells_Pritchard.918495	0	-	46301027	46301683	0	1	656	0
chr11	46303530	46306408	REMC_BreastStem.14551	0	.	46303530	46306408	0	1	2878	0
chr11	46304561	46305365	H1_polyA+.31047	0	.	46304561	46305365	0	1	804	0
chr11	46305718	46306217	prostate_carcinoma.27242	0	.	46305718	46306217	0	1	499	0
chr11	46366837	46369213	H1_polyA+.31239	0	.	46366837	46369213	0	1	2376	0
chr11	46367089	46368402	B_cells_Cheung.53345	0	.	46367089	46368402	0	1	1313	0
chr11	46367099	46368484	brain_AmbionMAQC.11838	0	.	46367099	46368484	0	1	1385	0
chr11	46368504	46368967	B_cells_Cheung.53346	0	.	46368504	46368967	0	1	463	0
chr11	46369657	46371021	brain_AmbionMAQC.11839	0	.	46369657	46371021	0	1	1364	0
chr11	46371174	46372145	B_Cells_Pritchard.918681	0	.	46371174	46372145	0	1	971	0
chr11	46371535	46372241	REMC_MyoepithelialBreast.26438	0	.	46371535	46372241	0	1	706	0
chr11	46574886	46576016	A549_Myers.20853	0	-	46574886	46576016	0	2	56,301	0,829
chr11	46575624	46576068	HeLa_polyA+_Chen.9514	0	.	46575624	46576068	0	1	444	0
chr11	46577503	46578680	HepG2_Caltech_ENCODE.9732	0	.	46577503	46578680	0	1	1177	0
chr11	46577859	46578632	MDAMB468_Thompson.6743	0	.	46577859	46578632	0	1	773	0
chr11	46577876	46578305	prostate_normal.15760	0	.	46577876	46578305	0	1	429	0
chr11	46577893	46578397	K562.12571	0	.	46577893	46578397	0	1	504	0
chr11	46688933	46689785	H1_polyA+.31136	0	.	46688933	46689785	0	1	852	0
chr11	46689177	46689726	A549_Myers.20875	0	.	46689177	46689726	0	1	549	0
chr11	46719235	46720543	kidney_Gilad.23520	0	-	46719235	46720543	0	2	390,358	0,950
chr11	46719803	46720525	melanoma_Garraway_short_term_cultures.17815	0	.	46719803	46720525	0	1	722	0
chr11	46719851	46720559	CD4_Plagnol_resting.16451	0	.	46719851	46720559	0	1	708	0
chr11	46719884	46720574	REMC_MyoepithelialBreast.26490	0	.	46719884	46720574	0	1	690	0
chr11	46827081	46831131	REMC_BreastStem.14583	0	.	46827081	46831131	0	1	4050	0
chr11	46827572	46831032	H1_polyA+.31174	0	.	46827572	46831032	0	1	3460	0
chr11	46902999	46907093	HeLa_polyA+_Chen.9558	0	.	46902999	46907093	0	1	4094	0
chr11	46906386	46906743	HeLa_polyA-_Chen.5048	0	.	46906386	46906743	0	1	357	0
chr11	47165594	47166857	REMC_LuminalBreast.28660	0	.	47165594	47166857	0	1	1263	0
chr11	47185199	47185602	B_cells_Cheung.53506	0	.	47185199	47185602	0	1	403	0
chr11	47358035	47359594	REMC_MyoepithelialBreast.26554	0	.	47358035	47359594	0	1	1559	0
chr11	47358050	47358499	melanoma_Garraway_short_term_cultures.17903	0	.	47358050	47358499	0	1	449	0
chr11	47358065	47359557	prostate_normal.15850	0	.	47358065	47359557	0	1	1492	0
chr11	47358075	47359482	REMC_LuminalBreast.28696	0	.	47358075	47359482	0	1	1407	0
chr11	47358212	47358593	brain_AmbionMAQC.11897	0	.	47358212	47358593	0	1	381	0
chr11	47358227	47358635	spleen_Raymond.55904	0	.	47358227	47358635	0	1	408	0
chr11	47359765	47361932	REMC_BreastStem.14640	0	.	47359765	47361932	0	1	2167	0
chr11	47359766	47361946	brain_AmbionMAQC.11899	0	.	47359766	47361946	0	1	2180	0
chr11	47361268	47361970	liver_polyA+.37228	0	.	47361268	47361970	0	1	702	0
chr11	47361427	47361940	B_Cells_Pritchard.920663	0	.	47361427	47361940	0	1	513	0
chr11	47366211	47367596	REMC_LuminalBreast.28699	0	.	47366211	47367596	0	1	1385	0
chr11	47367096	47367624	A549_Myers.20975	0	.	47367096	47367624	0	1	528	0
chr11	47371667	47374259	REMC_LuminalBreast.28700	0	.	47371667	47374259	0	1	2592	0
chr11	47372229	47372998	B_Cells_Pritchard.920705	0	.	47372229	47372998	0	1	769	0
chr11	47376602	47377325	B_cells_Cheung.53586	0	.	47376602	47377325	0	1	723	0
chr11	47377629	47378401	B_cells_Cheung.53587	0	.	47377629	47378401	0	1	772	0
chr11	47380903	47382343	REMC_LuminalBreast.28702	0	.	47380903	47382343	0	1	1440	0
chr11	47412004	47412562	REMC_LuminalBreast.28710	0	.	47412004	47412562	0	1	558	0
chr11	47430727	47431583	H1_polyA+.31220	0	.	47430727	47431583	0	1	856	0
chr11	47430746	47431570	CD4_Plagnol_activated.17089	0	.	47430746	47431570	0	1	824	0
chr11	47430758	47431288	A549_Myers.20999	0	.	47430758	47431288	0	1	530	0
chr11	47430766	47431887	melanoma_Garraway_short_term_cultures.17914	0	.	47430766	47431887	0	1	1121	0
chr11	47432194	47432642	CD4_Plagnol_resting.16524	0	.	47432194	47432642	0	1	448	0
chr11	47432201	47432750	CD4_Plagnol_activated.17091	0	.	47432201	47432750	0	1	549	0
chr11	47432838	47434654	B_cells_Cheung.53610	0	.	47432838	47434654	0	1	1816	0
chr11	47575144	47578440	prostate_normal.15993	0	+	47575144	47578440	0	2	55,1131	0,2165
chr11	47575842	47576249	brain_AmbionMAQC.11951	0	.	47575842	47576249	0	1	407	0
chr11	47576493	47577006	REMC_LuminalBreast.28807	0	.	47576493	47577006	0	1	513	0
chr11	47576501	47578673	REMC_MyoepithelialBreast.26649	0	.	47576501	47578673	0	1	2172	0
chr11	47576502	47576956	B_cells_Cheung.53632	0	.	47576502	47576956	0	1	454	0
chr11	47576535	47576940	prostate_carcinoma.28068	0	.	47576535	47576940	0	1	405	0
chr11	47576559	47576988	melanoma_Garraway_short_term_cultures.17960	0	.	47576559	47576988	0	1	429	0
chr11	47577027	47578459	B_cells_Cheung.53633	0	.	47577027	47578459	0	1	1432	0
chr11	47577144	47578673	REMC_LuminalBreast.28808	0	.	47577144	47578673	0	1	1529	0
chr11	47577170	47578439	prostate_carcinoma.28069	0	.	47577170	47578439	0	1	1269	0
chr11	47577171	47578440	prostate_normal.15994	0	.	47577171	47578440	0	1	1269	0
chr11	47577174	47578527	H1_polyA+.31354	0	.	47577174	47578527	0	1	1353	0
chr11	47577195	47578560	REMC_BreastStem.14645	0	.	47577195	47578560	0	1	1365	0
chr11	47577489	47578224	MIP101.18994	0	.	47577489	47578224	0	1	735	0
chr11	47578817	47580098	B_cells_Cheung.53634	0	.	47578817	47580098	0	1	1281	0
chr11	47580231	47586837	B_Cells_Pritchard.920961	0	-	47580231	47586837	0	2	184,3493	0,3113
chr11	47580531	47586837	B_Cells_Pritchard.920963	0	+	47580531	47586837	0	2	14,3504	0,2802
chr11	47583216	47586854	REMC_MyoepithelialBreast.26655	0	.	47583216	47586854	0	1	3638	0
chr11	47583237	47586880	REMC_BreastStem.14650	0	.	47583237	47586880	0	1	3643	0
chr11	47583251	47585249	brain_AmbionMAQC.11955	0	.	47583251	47585249	0	1	1998	0
chr11	47583333	47586824	prostate_normal.15996	0	.	47583333	47586824	0	1	3491	0
chr11	47583617	47589131	khalil_369	0	.	47583617	47589131	0	4	1107,443,61,619	0,1148,3007,4895
chr11	47585439	47586433	liver_polyA+.37315	0	.	47585439	47586433	0	1	994	0
chr11	47586076	47586838	brain_AmbionMAQC.11957	0	.	47586076	47586838	0	1	762	0
chr11	47586160	47586833	melanoma_Garraway_short_term_cultures.17964	0	.	47586160	47586833	0	1	673	0
chr11	47587098	47588595	B_cells_Cheung.53639	0	.	47587098	47588595	0	1	1497	0
chr11	47588637	47590346	REMC_MyoepithelialBreast.26657	0	.	47588637	47590346	0	1	1709	0
chr11	47588772	47590444	B_cells_Cheung.53640	0	.	47588772	47590444	0	1	1672	0
chr11	47588775	47590450	H1_polyA+.31360	0	.	47588775	47590450	0	1	1675	0
chr11	47589438	47590389	REMC_BreastStem.14653	0	.	47589438	47590389	0	1	951	0
chr11	47589944	47590364	CD4_Plagnol_activated.17110	0	.	47589944	47590364	0	1	420	0
chr11	47591889	47592802	melanoma_Garraway_short_term_cultures.17968	0	.	47591889	47592802	0	1	913	0
chr11	47634545	47635034	B_Cells_Pritchard.921087	0	-	47634545	47635034	0	1	489	0
chr11	47753537	47754086	H1_polyA+.31380	0	.	47753537	47754086	0	1	549	0
chr11	49283841	49357616	ENST00000529674	0	+	49283841	49357616	0	8	228,177,72,87,123,108,114,126	0,2146,2458,45484,58340,60358,64586,73649
chr11	49344198	49357797	ENST00000529081	0	+	49344198	49357797	0	4	109,69,101,299	0,2643,4232,13300
chr11	50188172	50189682	Rinn_00019636	0	-	50188172	50189682	0	2	163,268	0,1242
chr11	50190195	50192209	melanoma_Garraway_short_term_cultures.18082	0	.	50190195	50192209	0	1	2014	0
chr11	50237630	50238724	K562.12659	0	.	50237630	50238724	0	1	1094	0
chr11	56564768	56565657	REMC_BreastStem.14764	0	.	56564768	56565657	0	1	889	0
chr11	56764383	56765505	REMC_MyoepithelialBreast.26769	0	.	56764383	56765505	0	1	1122	0
chr11	56778865	56786632	REMC_LuminalBreast.28891	0	.	56778865	56786632	0	1	7767	0
chr11	56786748	56790495	REMC_LuminalBreast.28892	0	.	56786748	56790495	0	1	3747	0
chr11	56787576	56788430	REMC_MyoepithelialBreast.26773	0	.	56787576	56788430	0	1	854	0
chr11	56794056	56795686	REMC_BreastStem.14791	0	.	56794056	56795686	0	1	1630	0
chr11	56795310	56796807	REMC_MyoepithelialBreast.26777	0	.	56795310	56796807	0	1	1497	0
chr11	56796876	56803754	REMC_MyoepithelialBreast.26778	0	.	56796876	56803754	0	1	6878	0
chr11	56801427	56802560	REMC_BreastStem.14793	0	.	56801427	56802560	0	1	1133	0
chr11	56803132	56803619	REMC_BreastStem.14794	0	.	56803132	56803619	0	1	487	0
chr11	56803842	56805900	REMC_MyoepithelialBreast.26779	0	.	56803842	56805900	0	1	2058	0
chr11	56806563	56809072	REMC_BreastStem.14796	0	.	56806563	56809072	0	1	2509	0
chr11	56812009	56822279	REMC_BreastStem.14798	0	.	56812009	56822279	0	1	10270	0
chr11	56817265	56817844	B_cells_Cheung.53928	0	.	56817265	56817844	0	1	579	0
chr11	56952785	56954226	B_Cells_Pritchard.928469	0	.	56952785	56954226	0	1	1441	0
chr11	56959018	56959419	A549_Myers.21132	0	.	56959018	56959419	0	1	401	0
chr11	56978550	56979445	HepG2_Caltech_ENCODE.9844	0	.	56978550	56979445	0	1	895	0
chr11	56979488	56979961	prostate_carcinoma.27650	0	.	56979488	56979961	0	1	473	0
chr11	56979568	56981586	HepG2_Caltech_ENCODE.9845	0	.	56979568	56981586	0	1	2018	0
chr11	56980503	56981900	MIP101.18861	0	.	56980503	56981900	0	1	1397	0
chr11	56980829	56981981	H1_polyA+.31539	0	.	56980829	56981981	0	1	1152	0
chr11	56981865	56983308	HepG2_Caltech_ENCODE.9846	0	.	56981865	56983308	0	1	1443	0
chr11	56982792	56983309	prostate_carcinoma.27652	0	.	56982792	56983309	0	1	517	0
chr11	56982833	56983373	REMC_LuminalBreast.28895	0	.	56982833	56983373	0	1	540	0
chr11	56982938	56983843	A549_Myers.21135	0	.	56982938	56983843	0	1	905	0
chr11	56983453	56983892	B_cells_Cheung.53950	0	.	56983453	56983892	0	1	439	0
chr11	57005159	57006590	HepG2_Caltech_ENCODE.9857	0	.	57005159	57006590	0	1	1431	0
chr11	57006130	57006466	A549_Myers.21179	0	.	57006130	57006466	0	1	336	0
chr11	57041807	57042196	B_cells_Cheung.53985	0	.	57041807	57042196	0	1	389	0
chr11	57046377	57046813	CD4_Plagnol_activated.17304	0	.	57046377	57046813	0	1	436	0
chr11	57048259	57048589	CD4_Plagnol_resting.16700	0	.	57048259	57048589	0	1	330	0
chr11	57050382	57051417	melanoma_Garraway_short_term_cultures.18121	0	.	57050382	57051417	0	1	1035	0
chr11	57050740	57051132	K562.12676	0	.	57050740	57051132	0	1	392	0
chr11	57059030	57064777	B_Cells_Pritchard.932351	0	+	57059030	57064777	0	1	5747	0
chr11	57060809	57064046	CD4_Plagnol_activated.17319	0	.	57060809	57064046	0	1	3237	0
chr11	57060959	57063148	CD4_Plagnol_resting.16709	0	.	57060959	57063148	0	1	2189	0
chr11	57148025	57149308	REMC_MyoepithelialBreast.26864	0	.	57148025	57149308	0	1	1283	0
chr11	57148863	57149283	H1_polyA+.31579	0	.	57148863	57149283	0	1	420	0
chr11	57150105	57152680	REMC_MyoepithelialBreast.26866	0	.	57150105	57152680	0	1	2575	0
chr11	57162405	57164236	B_Cells_Pritchard.928841	0	.	57162405	57164236	0	1	1831	0
chr11	57162419	57162910	T47D_Burge_Thompson.7518	0	.	57162419	57162910	0	1	491	0
chr11	57162439	57163577	prostate_carcinoma.28249	0	.	57162439	57163577	0	1	1138	0
chr11	57162442	57163550	prostate_normal.16026	0	.	57162442	57163550	0	1	1108	0
chr11	57162565	57164723	HepG2_Caltech_ENCODE.9865	0	.	57162565	57164723	0	1	2158	0
chr11	57162580	57163059	liver_polyA+.38681	0	.	57162580	57163059	0	1	479	0
chr11	57162601	57163659	B_cells_Cheung.54020	0	.	57162601	57163659	0	1	1058	0
chr11	57162626	57163853	H1_rRNA-depleted_UCSD_REMC.24055	0	.	57162626	57163853	0	1	1227	0
chr11	57162930	57163375	IMR90_UCSD_REMC.13434	0	-	57162930	57163375	0	1	445	0
chr11	57162944	57163506	A549_Myers.21164	0	.	57162944	57163506	0	1	562	0
chr11	57162971	57165232	T47D_Burge_Thompson.7517	0	.	57162971	57165232	0	1	2261	0
chr11	57163017	57164588	REMC_LuminalBreast.28906	0	.	57163017	57164588	0	1	1571	0
chr11	57163081	57163449	MB435_Burge.11235	0	.	57163081	57163449	0	1	368	0
chr11	57163956	57164778	H9_polyA-_Chen.3827	0	.	57163956	57164778	0	1	822	0
chr11	57164270	57165128	NEC_from_H9.20242	0	.	57164270	57165128	0	1	858	0
chr11	57346131	57346486	HME_Burge.11047	0	.	57346131	57346486	0	1	355	0
chr11	57353429	57354759	BT474_Burge_Thompson.8458	0	.	57353429	57354759	0	1	1330	0
chr11	57353439	57354803	B_cells_Cheung.54059	0	.	57353439	57354803	0	1	1364	0
chr11	57353496	57354516	melanoma_Garraway_short_term_cultures.18178	0	.	57353496	57354516	0	1	1020	0
chr11	57353509	57354406	MDAMB468_Thompson.6835	0	.	57353509	57354406	0	1	897	0
chr11	57353511	57354793	prostate_normal.16060	0	.	57353511	57354793	0	1	1282	0
chr11	57366167	57367443	REMC_MyoepithelialBreast.26877	0	.	57366167	57367443	0	1	1276	0
chr11	57366218	57366623	B_cells_Cheung.54063	0	.	57366218	57366623	0	1	405	0
chr11	57370927	57372477	REMC_LuminalBreast.28954	0	.	57370927	57372477	0	1	1550	0
chr11	57372786	57373508	REMC_LuminalBreast.28955	0	.	57372786	57373508	0	1	722	0
chr11	57375039	57375994	REMC_LuminalBreast.28957	0	.	57375039	57375994	0	1	955	0
chr11	58037434	58041574	B_Cells_Pritchard.930911	0	.	58037434	58041574	0	1	4140	0
chr11	58037633	58040402	B_cells_Cheung.54212	0	.	58037633	58040402	0	1	2769	0
chr11	58038425	58041727	CD4_Plagnol_resting.16912	0	.	58038425	58041727	0	1	3302	0
chr11	58040497	58041745	B_cells_Cheung.54213	0	.	58040497	58041745	0	1	1248	0
chr11	58040989	58041567	CD4_Plagnol_activated.17348	0	.	58040989	58041567	0	1	578	0
chr11	58150937	58178690	pHIT000110307	0	-	58150937	58178690	0	3	150,81,102	0,11983,27651
chr11	58168662	58169662	REMC_MyoepithelialBreast.26903	0	.	58168662	58169662	0	1	1000	0
chr11	58170896	58171880	REMC_MyoepithelialBreast.26904	0	.	58170896	58171880	0	1	984	0
chr11	58227272	58227968	REMC_MyoepithelialBreast.26907	0	.	58227272	58227968	0	1	696	0
chr11	58227525	58227890	breast_Burge.10700	0	.	58227525	58227890	0	1	365	0
chr11	58228076	58231632	REMC_MyoepithelialBreast.26908	0	.	58228076	58231632	0	1	3556	0
chr11	58300613	58311929	K562.12719	0	+	58300613	58311929	0	3	11,26,1430	0,9629,9886
chr11	58310127	58311929	K562.12722	0	.	58310127	58311929	0	1	1802	0
chr11	58312841	58313496	K562.12723	0	.	58312841	58313496	0	1	655	0
chr11	58586436	58587621	B_cells_Cheung.54311	0	.	58586436	58587621	0	1	1185	0
chr11	58599951	58601842	B_cells_Cheung.54322	0	.	58599951	58601842	0	1	1891	0
chr11	58599958	58602139	B_Cells_Pritchard.932233	0	.	58599958	58602139	0	1	2181	0
chr11	58602368	58603928	B_Cells_Pritchard.932235	0	.	58602368	58603928	0	1	1560	0
chr11	58602967	58603409	B_cells_Cheung.54324	0	.	58602967	58603409	0	1	442	0
chr11	58626183	58626858	H1_polyA+.31699	0	.	58626183	58626858	0	1	675	0
chr11	58657002	58657468	MeWo_Garraway.9473	0	.	58657002	58657468	0	1	466	0
chr11	59062532	59062962	MIP101.19007	0	.	59062532	59062962	0	1	430	0
chr11	59064110	59064480	B_cells_Cheung.54422	0	.	59064110	59064480	0	1	370	0
chr11	59066251	59066820	B_Cells_Pritchard.934353	0	-	59066251	59066820	0	1	569	0
chr11	59066717	59067308	B_cells_Cheung.54425	0	.	59066717	59067308	0	1	591	0
chr11	59068886	59070632	H1_polyA+.31717	0	.	59068886	59070632	0	1	1746	0
chr11	59068908	59070556	REMC_LuminalBreast.29025	0	.	59068908	59070556	0	1	1648	0
chr11	59068917	59069833	B_cells_Cheung.54427	0	.	59068917	59069833	0	1	916	0
chr11	59068953	59069734	B_Cells_Pritchard.934361	0	+	59068953	59069734	0	1	781	0
chr11	59080828	59081554	prostate_carcinoma.27828	0	.	59080828	59081554	0	1	726	0
chr11	59081067	59081538	A549_Myers.21261	0	.	59081067	59081538	0	1	471	0
chr11	59083279	59085421	REMC_LuminalBreast.29029	0	.	59083279	59085421	0	1	2142	0
chr11	59085147	59090123	ENST00000533552	0	-	59085147	59090123	0	6	145,66,93,86,116,310	0,1420,2715,3916,4354,4666
chr11	59087775	59089400	REMC_MyoepithelialBreast.26948	0	.	59087775	59089400	0	1	1625	0
chr11	59088867	59089447	B_Cells_Pritchard.935197	0	-	59088867	59089447	0	1	580	0
chr11	59088876	59089358	REMC_BreastStem.14886	0	.	59088876	59089358	0	1	482	0
chr11	59142293	59142850	B_cells_Cheung.54564	0	.	59142293	59142850	0	1	557	0
chr11	59198159	59205551	REMC_LuminalBreast.29066	0	.	59198159	59205551	0	1	7392	0
chr11	59199715	59200051	B_Cells_Pritchard.933523	0	.	59199715	59200051	0	1	336	0
chr11	59199723	59200063	B_cells_Cheung.54461	0	.	59199723	59200063	0	1	340	0
chr11	59200532	59212599	REMC_BreastStem.14946	0	.	59200532	59212599	0	1	12067	0
chr11	59200757	59205995	REMC_MyoepithelialBreast.26983	0	.	59200757	59205995	0	1	5238	0
chr11	59207528	59212640	REMC_MyoepithelialBreast.26985	0	.	59207528	59212640	0	1	5112	0
chr11	59209181	59214808	REMC_LuminalBreast.29068	0	.	59209181	59214808	0	1	5627	0
chr11	59213850	59214884	REMC_BreastStem.14890	0	.	59213850	59214884	0	1	1034	0
chr11	59215638	59223094	REMC_LuminalBreast.29070	0	.	59215638	59223094	0	1	7456	0
chr11	59219838	59221283	REMC_MyoepithelialBreast.26991	0	.	59219838	59221283	0	1	1445	0
chr11	59220913	59221945	REMC_BreastStem.14892	0	.	59220913	59221945	0	1	1032	0
chr11	59455490	59456254	BT474_Burge_Thompson.8423	0	.	59455490	59456254	0	1	764	0
chr11	59489586	59494320	K562.12776	0	+	59489586	59494320	0	5	176,98,150,135,223	0,1529,2813,3612,4511
chr11	59489587	59519894	HIT000329941	0	+	59489587	59519894	0	6	175,98,135,97,249,27	0,1528,3611,4510,5656,30280
chr11	59710565	59711100	K562.12790	0	.	59710565	59711100	0	1	535	0
chr11	60247439	60249243	prostate_carcinoma.27892	0	.	60247439	60249243	0	1	1804	0
chr11	60252272	60252859	B_Cells_Pritchard.936055	0	.	60252272	60252859	0	1	587	0
chr11	60305629	60307359	prostate_carcinoma.27898	0	.	60305629	60307359	0	1	1730	0
chr11	60334270	60363015	pHIT000084456	0	+	60334270	60363015	0	4	63,57,114,141	0,14204,17649,28604
chr11	60334808	60335175	A549_Myers.21292	0	.	60334808	60335175	0	1	367	0
chr11	60355783	60358548	REMC_LuminalBreast.29101	0	.	60355783	60358548	0	1	2765	0
chr11	60382247	60383738	REMC_BreastStem.14915	0	.	60382247	60383738	0	1	1491	0
chr11	60382300	60383069	B_Cells_Pritchard.936409	0	.	60382300	60383069	0	1	769	0
chr11	60383775	60385534	REMC_LuminalBreast.29104	0	.	60383775	60385534	0	1	1759	0
chr11	60386034	60389986	REMC_LuminalBreast.29105	0	.	60386034	60389986	0	1	3952	0
chr11	60433898	60435060	B_Cells_Pritchard.936537	0	+	60433898	60435060	0	1	1162	0
chr11	60434079	60435008	B_cells_Cheung.54713	0	.	60434079	60435008	0	1	929	0
chr11	60434090	60434657	prostate_carcinoma.27916	0	.	60434090	60434657	0	1	567	0
chr11	60434276	60434612	testes_Burge.14270	0	.	60434276	60434612	0	1	336	0
chr11	60480476	60480935	B_cells_Cheung.54579	0	.	60480476	60480935	0	1	459	0
chr11	60481792	60482717	REMC_LuminalBreast.29117	0	.	60481792	60482717	0	1	925	0
chr11	60481914	60482790	B_cells_Cheung.54581	0	.	60481914	60482790	0	1	876	0
chr11	60489752	60490478	B_Cells_Pritchard.936569	0	.	60489752	60490478	0	1	726	0
chr11	60546971	60548068	REMC_MyoepithelialBreast.27031	0	.	60546971	60548068	0	1	1097	0
chr11	60547456	60548289	prostate_carcinoma.27929	0	.	60547456	60548289	0	1	833	0
chr11	60548648	60555008	CD4_Plagnol_activated.17477	0	.	60548648	60555008	0	1	6360	0
chr11	60548690	60554995	B_Cells_Pritchard.936699	0	-	60548690	60554995	0	4	3531,1103,1228,70	0,3531,4810,6235
chr11	60551509	60567386	Rinn_00019644	0	-	60551509	60567386	0	2	2934,274	0,15603
chr11	60553525	60554525	CD4_Snyder.21144	0	.	60553525	60554525	0	1	1000	0
chr11	60556355	60562372	B_Cells_Pritchard.936701	0	+	60556355	60562372	0	1	6017	0
chr11	60559492	60560754	CD4_Plagnol_activated.17482	0	.	60559492	60560754	0	1	1262	0
chr11	60560858	60562234	CD4_Plagnol_activated.17483	0	.	60560858	60562234	0	1	1376	0
chr11	60566769	60567396	CD4_Plagnol_activated.17487	0	.	60566769	60567396	0	1	627	0
chr11	60575932	60601074	B_Cells_Pritchard.936723	0	+	60575932	60601074	0	8	2523,3703,1508,3047,672,4657,2349,1176	0,2693,6498,8679,12507,13731,19099,23966
chr11	60576431	60577473	CD4_Plagnol_activated.17491	0	.	60576431	60577473	0	1	1042	0
chr11	60578625	60601074	B_Cells_Pritchard.936725	0	-	60578625	60601074	0	9	4605,689,3007,143,96,87,4498,2349,1129	0,4624,6053,9296,10383,10890,11031,16406,21320
chr11	60578626	60582317	CD4_Plagnol_activated.17493	0	.	60578626	60582317	0	1	3691	0
chr11	60584617	60586394	CD4_Plagnol_activated.17495	0	.	60584617	60586394	0	1	1777	0
chr11	60589883	60591039	CD4_Plagnol_activated.17498	0	.	60589883	60591039	0	1	1156	0
chr11	60591152	60593060	CD4_Plagnol_activated.17499	0	.	60591152	60593060	0	1	1908	0
chr11	60593208	60594302	CD4_Plagnol_activated.17500	0	.	60593208	60594302	0	1	1094	0
chr11	60594466	60598778	B_cells_Cheung.54607	0	.	60594466	60598778	0	1	4312	0
chr11	60595279	60596472	CD4_Plagnol_activated.17501	0	.	60595279	60596472	0	1	1193	0
chr11	60596574	60597291	CD4_Plagnol_activated.17502	0	.	60596574	60597291	0	1	717	0
chr11	60602515	60608187	B_Cells_Pritchard.936753	0	+	60602515	60608187	0	2	545,4703	0,969
chr11	60603199	60608258	CD4_Plagnol_activated.17505	0	.	60603199	60608258	0	1	5059	0
chr11	60603199	60608187	B_Cells_Pritchard.936755	0	-	60603199	60608187	0	3	1745,102,3030	0,1774,1958
chr11	60603703	60604852	REMC_MyoepithelialBreast.27034	0	.	60603703	60604852	0	1	1149	0
chr11	60605471	60606957	REMC_MyoepithelialBreast.27035	0	.	60605471	60606957	0	1	1486	0
chr11	60611184	60613062	B_cells_Cheung.54610	0	.	60611184	60613062	0	1	1878	0
chr11	60717776	60718160	BT474_Burge_Thompson.8474	0	.	60717776	60718160	0	1	384	0
chr11	60717826	60718149	B_Cells_Pritchard.937041	0	.	60717826	60718149	0	1	323	0
chr11	60718270	60718639	B_Cells_Pritchard.937043	0	.	60718270	60718639	0	1	369	0
chr11	60719730	60720365	BT474_Burge_Thompson.8475	0	.	60719730	60720365	0	1	635	0
chr11	60778041	60778834	H1_polyA+.31776	0	.	60778041	60778834	0	1	793	0
chr11	60778122	60779430	HepG2_Caltech_ENCODE.9937	0	.	60778122	60779430	0	1	1308	0
chr11	60778378	60778787	A549_Myers.21338	0	.	60778378	60778787	0	1	409	0
chr11	60820687	60822471	REMC_MyoepithelialBreast.27158	0	.	60820687	60822471	0	1	1784	0
chr11	60903715	60904591	B_cells_Cheung.54663	0	.	60903715	60904591	0	1	876	0
chr11	60903795	60904569	REMC_MyoepithelialBreast.27168	0	.	60903795	60904569	0	1	774	0
chr11	60904066	60904458	CD4_Plagnol_activated.17533	0	.	60904066	60904458	0	1	392	0
chr11	60904237	60904569	H1_polyA+.31993	0	.	60904237	60904569	0	1	332	0
chr11	60905816	60910101	REMC_MyoepithelialBreast.27170	0	.	60905816	60910101	0	1	4285	0
chr11	60907692	60910394	REMC_BreastStem.14957	0	.	60907692	60910394	0	1	2702	0
chr11	60907766	60910197	B_cells_Cheung.54667	0	.	60907766	60910197	0	1	2431	0
chr11	60908046	60910820	H1_polyA+.31997	0	.	60908046	60910820	0	1	2774	0
chr11	60908376	60908962	BT474_Burge_Thompson.8585	0	.	60908376	60908962	0	1	586	0
chr11	60913690	60915312	REMC_LuminalBreast.29217	0	.	60913690	60915312	0	1	1622	0
chr11	60972744	60974080	CD4_Plagnol_activated.17568	0	.	60972744	60974080	0	1	1336	0
chr11	60973792	60976215	H1_polyA+.32012	0	.	60973792	60976215	0	1	2423	0
chr11	60973793	60975596	REMC_LuminalBreast.29146	0	.	60973793	60975596	0	1	1803	0
chr11	60977432	60979099	H1_polyA+.32014	0	.	60977432	60979099	0	1	1667	0
chr11	60978460	60980137	REMC_LuminalBreast.29149	0	.	60978460	60980137	0	1	1677	0
chr11	60979264	60980122	HeLa_polyA+_Chen.9818	0	.	60979264	60980122	0	1	858	0
chr11	60979303	60980132	prostate_carcinoma.28606	0	.	60979303	60980132	0	1	829	0
chr11	60979305	60980137	melanoma_Garraway_short_term_cultures.18341	0	.	60979305	60980137	0	1	832	0
chr11	60979311	60980149	H1_polyA+.32015	0	.	60979311	60980149	0	1	838	0
chr11	60979326	60980103	CD4_Plagnol_resting.16958	0	.	60979326	60980103	0	1	777	0
chr11	60979342	60980122	CD4_Plagnol_activated.17572	0	.	60979342	60980122	0	1	780	0
chr11	60979347	60980164	MeWo_Garraway.9709	0	.	60979347	60980164	0	1	817	0
chr11	60979348	60986732	MIP101.19188	0	+	60979348	60986732	0	2	848,73	0,7311
chr11	60979505	60980122	H9_polyA+.12550	0	.	60979505	60980122	0	1	617	0
chr11	60979779	60980117	liver_polyA+.38022	0	.	60979779	60980117	0	1	338	0
chr11	60983447	60986183	B_cells_Cheung.54692	0	.	60983447	60986183	0	1	2736	0
chr11	60987462	60988682	H1_polyA+.32019	0	.	60987462	60988682	0	1	1220	0
chr11	60987472	60987975	REMC_MyoepithelialBreast.27075	0	.	60987472	60987975	0	1	503	0
chr11	60987476	60988450	REMC_LuminalBreast.29154	0	.	60987476	60988450	0	1	974	0
chr11	60987491	60988643	HeLa_polyA+_Chen.9823	0	.	60987491	60988643	0	1	1152	0
chr11	60987547	60988284	melanoma_Garraway_short_term_cultures.18345	0	.	60987547	60988284	0	1	737	0
chr11	60987568	60988095	prostate_normal.16252	0	.	60987568	60988095	0	1	527	0
chr11	60987582	60988573	MIP101.19193	0	.	60987582	60988573	0	1	991	0
chr11	60987926	60988568	H9_polyA+.12552	0	.	60987926	60988568	0	1	642	0
chr11	60989627	60990125	REMC_LuminalBreast.29155	0	.	60989627	60990125	0	1	498	0
chr11	60990183	60991346	HeLa_polyA+_Chen.9824	0	.	60990183	60991346	0	1	1163	0
chr11	60992855	60993528	REMC_MyoepithelialBreast.27077	0	.	60992855	60993528	0	1	673	0
chr11	60994775	60995408	prostate_normal.16270	0	.	60994775	60995408	0	1	633	0
chr11	60994967	60995410	H9_polyA+.12558	0	.	60994967	60995410	0	1	443	0
chr11	61001637	61002041	A549_Myers.21368	0	.	61001637	61002041	0	1	404	0
chr11	61020578	61030674	Rinn_00019313	0	+	61020578	61030674	0	3	149,74,866	0,3231,9230
chr11	61021575	61021935	prostate_carcinoma.28614	0	.	61021575	61021935	0	1	360	0
chr11	61023811	61030699	Rinn_00019909	0	+	61023811	61030699	0	2	72,891	0,5997
chr11	61026276	61027229	prostate_carcinoma.28616	0	.	61026276	61027229	0	1	953	0
chr11	61026995	61028133	BT474_Burge_Thompson.8505	0	.	61026995	61028133	0	1	1138	0
chr11	61027002	61030958	Rinn_00019314	0	+	61027002	61030958	0	2	21,1150	0,2806
chr11	61027003	61030958	Rinn_00019315	0	+	61027003	61030958	0	2	24,1150	0,2805
chr11	61027283	61028232	prostate_normal.16282	0	.	61027283	61028232	0	1	949	0
chr11	61027291	61028291	prostate_carcinoma.28617	0	.	61027291	61028291	0	1	1000	0
chr11	61027503	61028277	B_Cells_Pritchard.937377	0	-	61027503	61028277	0	1	774	0
chr11	61027687	61028292	brain_AmbionMAQC.12095	0	.	61027687	61028292	0	1	605	0
chr11	61028537	61030818	brain_AmbionMAQC.12096	0	.	61028537	61030818	0	1	2281	0
chr11	61028707	61029531	B_Cells_Pritchard.937367	0	-	61028707	61029531	0	1	824	0
chr11	61029731	61030659	B_cells_Cheung.54699	0	.	61029731	61030659	0	1	928	0
chr11	61029796	61030674	testes_Burge.14309	0	.	61029796	61030674	0	1	878	0
chr11	61029796	61030617	B_Cells_Pritchard.937381	0	.	61029796	61030617	0	1	821	0
chr11	61029806	61030610	prostate_normal.16360	0	.	61029806	61030610	0	1	804	0
chr11	61029961	61030297	A549_Myers.21374	0	.	61029961	61030297	0	1	336	0
chr11	61029977	61030628	HepG2_Caltech_ENCODE.9965	0	.	61029977	61030628	0	1	651	0
chr11	61029978	61030661	H1_polyA+.31779	0	.	61029978	61030661	0	1	683	0
chr11	61031311	61031670	A549_Myers.21375	0	.	61031311	61031670	0	1	359	0
chr11	61108543	61110488	MIP101.19088	0	.	61108543	61110488	0	1	1945	0
chr11	61108562	61113249	prostate_normal.16368	0	.	61108562	61113249	0	1	4687	0
chr11	61108847	61109806	BT474_Burge_Thompson.8512	0	.	61108847	61109806	0	1	959	0
chr11	61110142	61111541	H1_polyA+.31790	0	.	61110142	61111541	0	1	1399	0
chr11	61110638	61112546	MIP101.19089	0	.	61110638	61112546	0	1	1908	0
chr11	61111368	61111823	T47D_Burge_Thompson.7654	0	.	61111368	61111823	0	1	455	0
chr11	61112064	61112633	H1_polyA+.31791	0	.	61112064	61112633	0	1	569	0
chr11	61113360	61115036	prostate_carcinoma.28626	0	.	61113360	61115036	0	1	1676	0
chr11	61114061	61114879	H1_polyA+.31792	0	.	61114061	61114879	0	1	818	0
chr11	61116827	61120198	prostate_carcinoma.28627	0	+	61116827	61120198	0	2	88,1721	0,1650
chr11	61117092	61117713	prostate_normal.16371	0	.	61117092	61117713	0	1	621	0
chr11	61118253	61120198	prostate_carcinoma.28628	0	.	61118253	61120198	0	1	1945	0
chr11	61119648	61120930	prostate_normal.16373	0	.	61119648	61120930	0	1	1282	0
chr11	61121829	61122677	BT474_Burge_Thompson.8518	0	.	61121829	61122677	0	1	848	0
chr11	61122885	61125242	prostate_normal.16374	0	.	61122885	61125242	0	1	2357	0
chr11	61129504	61130491	H1_polyA+.31795	0	.	61129504	61130491	0	1	987	0
chr11	61131383	61133327	REMC_LuminalBreast.29184	0	.	61131383	61133327	0	1	1944	0
chr11	61131993	61132829	H1_polyA+.31797	0	.	61131993	61132829	0	1	836	0
chr11	61132010	61134236	T47D_Burge_Thompson.7661	0	.	61132010	61134236	0	1	2226	0
chr11	61132272	61133766	prostate_normal.16375	0	.	61132272	61133766	0	1	1494	0
chr11	61134844	61135575	T47D_Burge_Thompson.7666	0	.	61134844	61135575	0	1	731	0
chr11	61167415	61170103	REMC_BreastStem.14965	0	.	61167415	61170103	0	1	2688	0
chr11	61180498	61181082	BT474_Burge_Thompson.8529	0	.	61180498	61181082	0	1	584	0
chr11	61180543	61181044	A549_Myers.21414	0	.	61180543	61181044	0	1	501	0
chr11	61182307	61184114	REMC_BreastStem.14969	0	.	61182307	61184114	0	1	1807	0
chr11	61392495	61393166	B_cells_Cheung.55210	0	.	61392495	61393166	0	1	671	0
chr11	61392611	61394064	REMC_BreastStem.14998	0	.	61392611	61394064	0	1	1453	0
chr11	61392844	61393707	REMC_LuminalBreast.29238	0	.	61392844	61393707	0	1	863	0
chr11	61393046	61393534	A549_Myers.21555	0	.	61393046	61393534	0	1	488	0
chr11	61393129	61394138	REMC_MyoepithelialBreast.27124	0	.	61393129	61394138	0	1	1009	0
chr11	61393784	61395067	REMC_LuminalBreast.29239	0	.	61393784	61395067	0	1	1283	0
chr11	61393853	61394542	A549_Myers.21556	0	.	61393853	61394542	0	1	689	0
chr11	61394119	61395866	REMC_BreastStem.14999	0	.	61394119	61395866	0	1	1747	0
chr11	61394459	61394813	B_cells_Cheung.55212	0	.	61394459	61394813	0	1	354	0
chr11	61394662	61395649	A549_Myers.21557	0	.	61394662	61395649	0	1	987	0
chr11	61469823	61470371	testes_Burge.14378	0	.	61469823	61470371	0	1	548	0
chr11	61536807	61537942	HeLa_polyA+_Chen.9831	0	.	61536807	61537942	0	1	1135	0
chr11	61574662	61576252	REMC_BreastStem.15010	0	.	61574662	61576252	0	1	1590	0
chr11	61577024	61578375	REMC_LuminalBreast.29251	0	.	61577024	61578375	0	1	1351	0
chr11	61636403	61636792	A549_Myers.21474	0	.	61636403	61636792	0	1	389	0
chr11	61844972	61845691	prostate_carcinoma.28108	0	.	61844972	61845691	0	1	719	0
chr11	61849039	61849374	A549_Myers.21489	0	.	61849039	61849374	0	1	335	0
chr11	61918521	61919378	prostate_carcinoma.28159	0	.	61918521	61919378	0	1	857	0
chr11	61919155	61919656	A549_Myers.21496	0	.	61919155	61919656	0	1	501	0
chr11	61952587	61956039	REMC_LuminalBreast.29274	0	.	61952587	61956039	0	1	3452	0
chr11	62207719	62208917	REMC_BreastStem.15036	0	.	62207719	62208917	0	1	1198	0
chr11	62270556	62272061	B_cells_Cheung.71273	0	.	62270556	62272061	0	1	1505	0
chr11	62270695	62271559	CD4_Plagnol_resting.17246	0	.	62270695	62271559	0	1	864	0
chr11	62292717	62294305	REMC_LuminalBreast.29480	0	.	62292717	62294305	0	1	1588	0
chr11	62366058	62368056	REMC_MyoepithelialBreast.27502	0	.	62366058	62368056	0	1	1998	0
chr11	62370842	62372570	B_cells_Cheung.71305	0	.	62370842	62372570	0	1	1728	0
chr11	62414701	62415859	REMC_LuminalBreast.29334	0	.	62414701	62415859	0	1	1158	0
chr11	62414718	62420923	REMC_MyoepithelialBreast.27557	0	.	62414718	62420923	0	1	6205	0
chr11	62414801	62415902	REMC_BreastStem.15054	0	.	62414801	62415902	0	1	1101	0
chr11	62416290	62417328	HeLa_polyA+_Chen.9996	0	.	62416290	62417328	0	1	1038	0
chr11	62416347	62417181	B_Cells_Pritchard.967041	0	-	62416347	62417181	0	2	437,336	0,498
chr11	62420088	62423906	REMC_LuminalBreast.29336	0	.	62420088	62423906	0	1	3818	0
chr11	62420144	62420586	HeLa_polyA+_Chen.9997	0	.	62420144	62420586	0	1	442	0
chr11	62423943	62425249	REMC_MyoepithelialBreast.27560	0	.	62423943	62425249	0	1	1306	0
chr11	62424513	62425175	REMC_LuminalBreast.29337	0	.	62424513	62425175	0	1	662	0
chr11	62428018	62428824	REMC_MyoepithelialBreast.27562	0	.	62428018	62428824	0	1	806	0
chr11	62447198	62447764	BT474_Burge_Thompson.8629	0	.	62447198	62447764	0	1	566	0
chr11	62473095	62473423	B_Cells_Pritchard.940331	0	.	62473095	62473423	0	1	328	0
chr11	62544608	62545276	A549_Myers.21596	0	.	62544608	62545276	0	1	668	0
chr11	63019535	63024651	Rinn_00019318	0	+	63019535	63024651	0	2	122,203	0,4913
chr11	63093824	63096259	kidney_Gilad.24740	0	-	63093824	63096259	0	2	483,93	0,2342
chr11	63095880	63096343	H9_polyA+.12681	0	.	63095880	63096343	0	1	463	0
chr11	63096020	63096860	BT20_Thompson.5960	0	.	63096020	63096860	0	1	840	0
chr11	63096027	63096348	T47D_Burge_Thompson.7742	0	.	63096027	63096348	0	1	321	0
chr11	63147687	63148049	B_cells_Cheung.54846	0	.	63147687	63148049	0	1	362	0
chr11	63293819	63294398	REMC_MyoepithelialBreast.27223	0	.	63293819	63294398	0	1	579	0
chr11	63294976	63296079	melanoma_Garraway_short_term_cultures.18538	0	.	63294976	63296079	0	1	1103	0
chr11	63301153	63302216	H1_polyA+.32148	0	.	63301153	63302216	0	1	1063	0
chr11	63301255	63302152	prostate_carcinoma.28205	0	.	63301255	63302152	0	1	897	0
chr11	63301475	63302174	melanoma_Garraway_short_term_cultures.18541	0	.	63301475	63302174	0	1	699	0
chr11	63302447	63307253	H1_polyA+.32149	0	.	63302447	63307253	0	1	4806	0
chr11	63307348	63310700	H1_polyA+.32150	0	.	63307348	63310700	0	1	3352	0
chr11	63309410	63310169	B_cells_Cheung.54932	0	.	63309410	63310169	0	1	759	0
chr11	63309935	63310375	melanoma_Garraway_short_term_cultures.18545	0	.	63309935	63310375	0	1	440	0
chr11	63313774	63319522	H1_polyA+.32153	0	.	63313774	63319522	0	1	5748	0
chr11	63320191	63321687	H1_polyA+.32155	0	.	63320191	63321687	0	1	1496	0
chr11	63321419	63331811	B_Cells_Pritchard.942387	0	-	63321419	63331811	0	2	402,575	0,9817
chr11	63323623	63325849	H1_polyA+.32158	0	.	63323623	63325849	0	1	2226	0
chr11	63325038	63325798	melanoma_Garraway_short_term_cultures.18550	0	.	63325038	63325798	0	1	760	0
chr11	63356187	63357679	B_cells_Cheung.54950	0	.	63356187	63357679	0	1	1492	0
chr11	63356263	63357348	REMC_BreastStem.15083	0	.	63356263	63357348	0	1	1085	0
chr11	63358624	63360779	B_cells_Cheung.54952	0	.	63358624	63360779	0	1	2155	0
chr11	63358643	63360776	B_Cells_Pritchard.942237	0	-	63358643	63360776	0	1	2133	0
chr11	63359330	63361787	REMC_LuminalBreast.29375	0	.	63359330	63361787	0	1	2457	0
chr11	63772988	63773368	HeLa_polyA+_Chen.10096	0	.	63772988	63773368	0	1	380	0
chr11	63773130	63773742	MCF7_Burge_Thompson.8352	0	.	63773130	63773742	0	1	612	0
chr11	63846874	63847176	A549_Myers.21771	0	.	63846874	63847176	0	1	302	0
chr11	63847067	63847484	brain_AmbionMAQC.12256	0	.	63847067	63847484	0	1	417	0
chr11	63855588	63856514	BT474_Burge_Thompson.8702	0	.	63855588	63856514	0	1	926	0
chr11	63855629	63856399	A549_Myers.21774	0	.	63855629	63856399	0	1	770	0
chr11	63857833	63858466	CD4_Plagnol_resting.17123	0	.	63857833	63858466	0	1	633	0
chr11	63902813	63903413	BT474_Burge_Thompson.8708	0	.	63902813	63903413	0	1	600	0
chr11	63903325	63904087	H1_polyA+.32208	0	.	63903325	63904087	0	1	762	0
chr11	63903434	63904435	prostate_carcinoma.28365	0	.	63903434	63904435	0	1	1001	0
chr11	63903464	63904024	brain_AmbionMAQC.12264	0	.	63903464	63904024	0	1	560	0
chr11	63903492	63904847	BT474_Burge_Thompson.8709	0	.	63903492	63904847	0	1	1355	0
chr11	63913095	63913855	prostate_carcinoma.28368	0	.	63913095	63913855	0	1	760	0
chr11	63916661	63917289	BT474_Burge_Thompson.8712	0	.	63916661	63917289	0	1	628	0
chr11	63918349	63920204	H1_polyA+.32209	0	.	63918349	63920204	0	1	1855	0
chr11	63918487	63918941	B_Cells_Pritchard.943437	0	.	63918487	63918941	0	1	454	0
chr11	63931562	63932139	BT474_Burge_Thompson.8713	0	.	63931562	63932139	0	1	577	0
chr11	63931615	63931997	B_Cells_Pritchard.943501	0	.	63931615	63931997	0	1	382	0
chr11	63935401	63935708	BT474_Burge_Thompson.8714	0	.	63935401	63935708	0	1	307	0
chr11	63939269	63940045	B_Cells_Pritchard.943531	0	.	63939269	63940045	0	1	776	0
chr11	63953454	63961590	pHIT000019678	0	-	63953454	63961590	0	3	63,190,113	0,3829,8023
chr11	63962461	63963595	REMC_MyoepithelialBreast.27341	0	.	63962461	63963595	0	1	1134	0
chr11	63968986	63969319	A549_Myers.21786	0	.	63968986	63969319	0	1	333	0
chr11	63984967	63985392	B_Cells_Pritchard.943725	0	.	63984967	63985392	0	1	425	0
chr11	64050479	64050862	A549_Myers.21789	0	.	64050479	64050862	0	1	383	0
chr11	64063143	64063535	BT474_Burge_Thompson.8719	0	.	64063143	64063535	0	1	392	0
chr11	64248317	64249501	REMC_LuminalBreast.29472	0	.	64248317	64249501	0	1	1184	0
chr11	64309238	64309568	HeLa_polyA+_Chen.10131	0	.	64309238	64309568	0	1	330	0
chr11	64311680	64312070	K562.13070	0	.	64311680	64312070	0	1	390	0
chr11	64337642	64339940	REMC_LuminalBreast.29615	0	.	64337642	64339940	0	1	2298	0
chr11	64337821	64339320	REMC_BreastStem.15173	0	.	64337821	64339320	0	1	1499	0
chr11	64338005	64338547	B_cells_Cheung.55125	0	.	64338005	64338547	0	1	542	0
chr11	64341459	64343779	REMC_BreastStem.15176	0	.	64341459	64343779	0	1	2320	0
chr11	64372488	64373194	B_Cells_Pritchard.944779	0	.	64372488	64373194	0	1	706	0
chr11	64412654	64413545	B_Cells_Pritchard.944865	0	-	64412654	64413545	0	1	891	0
chr11	64412693	64413553	A549_Myers.21881	0	.	64412693	64413553	0	1	860	0
chr11	64413103	64413782	liver_polyA+.38572	0	.	64413103	64413782	0	1	679	0
chr11	64414672	64415041	kidney_Gilad.24920	0	.	64414672	64415041	0	1	369	0
chr11	64414737	64415166	prostate_carcinoma.28422	0	.	64414737	64415166	0	1	429	0
chr11	64416409	64416948	B_Cells_Pritchard.944885	0	-	64416409	64416948	0	1	539	0
chr11	64498719	64509156	B_Cells_Pritchard.945031	0	+	64498719	64509156	0	2	311,66	0,10371
chr11	64530616	64530993	A549_Myers.21896	0	.	64530616	64530993	0	1	377	0
chr11	64584058	64584379	A549_Myers.21908	0	.	64584058	64584379	0	1	321	0
chr11	64674681	64675697	BT474_Burge_Thompson.8763	0	.	64674681	64675697	0	1	1016	0
chr11	64674681	64682423	BT474_Burge_Thompson.8762	0	-	64674681	64682423	0	2	702,377	0,7365
chr11	64674794	64675364	A549_Myers.21922	0	.	64674794	64675364	0	1	570	0
chr11	64682672	64684012	BT474_Burge_Thompson.8765	0	.	64682672	64684012	0	1	1340	0
chr11	64689468	64690079	HepG2_Caltech_ENCODE.10159	0	.	64689468	64690079	0	1	611	0
chr11	64691050	64691377	B_cells_Cheung.55224	0	.	64691050	64691377	0	1	327	0
chr11	64767357	64768027	REMC_LuminalBreast.29573	0	.	64767357	64768027	0	1	670	0
chr11	64831143	64832413	REMC_LuminalBreast.29589	0	.	64831143	64832413	0	1	1270	0
chr11	64831197	64832324	MDAMB231_Thompson.6271	0	.	64831197	64832324	0	1	1127	0
chr11	64831293	64832105	HepG2_Caltech_ENCODE.10173	0	.	64831293	64832105	0	1	812	0
chr11	64831296	64833505	prostate_carcinoma.28864	0	.	64831296	64833505	0	1	2209	0
chr11	64831297	64832740	melanoma_Garraway_short_term_cultures.18710	0	.	64831297	64832740	0	1	1443	0
chr11	64831310	64831945	CD4_Plagnol_activated.18003	0	.	64831310	64831945	0	1	635	0
chr11	64831330	64832736	HeLa_polyA+_Chen.10299	0	.	64831330	64832736	0	1	1406	0
chr11	64831728	64833431	A549_Myers.21948	0	.	64831728	64833431	0	1	1703	0
chr11	64831811	64832703	brain_AmbionMAQC.12349	0	.	64831811	64832703	0	1	892	0
chr11	64832583	64833341	H9_polyA+.12873	0	.	64832583	64833341	0	1	758	0
chr11	64834045	64835191	melanoma_Garraway_short_term_cultures.18711	0	.	64834045	64835191	0	1	1146	0
chr11	64834048	64835861	prostate_carcinoma.28865	0	.	64834048	64835861	0	1	1813	0
chr11	64834049	64835861	B_Cells_Pritchard.945515	0	+	64834049	64835861	0	1	1812	0
chr11	64834055	64834684	A549_Myers.21949	0	.	64834055	64834684	0	1	629	0
chr11	64834071	64834861	CD4_Plagnol_activated.18004	0	.	64834071	64834861	0	1	790	0
chr11	64834126	64834744	CD4_Plagnol_resting.17216	0	.	64834126	64834744	0	1	618	0
chr11	64834481	64835814	H1_polyA+.32295	0	.	64834481	64835814	0	1	1333	0
chr11	64837312	64837782	HeLa_polyA+_Chen.10302	0	.	64837312	64837782	0	1	470	0
chr11	64847655	64848220	IMR90_UCSD_REMC.14058	0	-	64847655	64848220	0	1	565	0
chr11	64847668	64848353	MDAMB231_Thompson.6256	0	.	64847668	64848353	0	1	685	0
chr11	64847711	64848207	H1_rRNA-depleted_UCSD_REMC.24916	0	.	64847711	64848207	0	1	496	0
chr11	64847777	64848380	MIP101.19472	0	.	64847777	64848380	0	1	603	0
chr11	64847800	64848264	HepG2_Caltech_ENCODE.10176	0	.	64847800	64848264	0	1	464	0
chr11	64848676	64849100	HeLa_polyA+_Chen.10173	0	.	64848676	64849100	0	1	424	0
chr11	64848717	64849225	brain_AmbionMAQC.12356	0	.	64848717	64849225	0	1	508	0
chr11	64848777	64849206	MCF10A_Thompson.6166	0	.	64848777	64849206	0	1	429	0
chr11	64851120	64852975	HeLa_polyA+_Chen.10169	0	.	64851120	64852975	0	1	1855	0
chr11	64877704	64878213	IMR90_UCSD_REMC.14067	0	-	64877704	64878213	0	1	509	0
chr11	64886965	64888479	REMC_LuminalBreast.29580	0	.	64886965	64888479	0	1	1514	0
chr11	64887821	64888179	B_Cells_Pritchard.945587	0	+	64887821	64888179	0	1	358	0
chr11	64939659	64941075	BT474_Burge_Thompson.8817	0	.	64939659	64941075	0	1	1416	0
chr11	64939665	64940354	prostate_normal.19660	0	.	64939665	64940354	0	1	689	0
chr11	64940133	64956630	HeLa_polyA+_Chen.10529	0	.	64940133	64956630	0	1	16497	0
chr11	64940633	64941379	melanoma_Garraway_short_term_cultures.18748	0	.	64940633	64941379	0	1	746	0
chr11	64940642	64941082	prostate_normal.19661	0	.	64940642	64941082	0	1	440	0
chr11	64940646	64941137	CD4_Plagnol_resting.17327	0	.	64940646	64941137	0	1	491	0
chr11	64940784	64942373	HeLa_polyA-_Chen.5400	0	.	64940784	64942373	0	1	1589	0
chr11	64940788	64946518	REMC_MyoepithelialBreast.27457	0	.	64940788	64946518	0	1	5730	0
chr11	64941126	64956578	B_Cells_Pritchard.945655	0	-	64941126	64956578	0	2	2897,11131	0,4321
chr11	64941199	64942162	liver_polyA+.38665	0	.	64941199	64942162	0	1	963	0
chr11	64941216	64964054	prostate_carcinoma.28908	0	+	64941216	64964054	0	3	738,10238,375	0,4209,22463
chr11	64941374	64946784	pHIT000019798	0	+	64941374	64946784	0	2	40,620	0,4790
chr11	64941424	64941953	brain_AmbionMAQC.12390	0	.	64941424	64941953	0	1	529	0
chr11	64941542	64942340	BT474_Burge_Thompson.8818	0	.	64941542	64942340	0	1	798	0
chr11	64941870	64943730	CD4_Snyder.21618	0	.	64941870	64943730	0	1	1860	0
chr11	64941875	64942338	T47D_Burge_Thompson.7948	0	.	64941875	64942338	0	1	463	0
chr11	64942517	64943827	H1_polyA+.32319	0	.	64942517	64943827	0	1	1310	0
chr11	64944026	64944341	MIP101.19485	0	.	64944026	64944341	0	1	315	0
chr11	64944037	64944817	CD4_Snyder.21619	0	.	64944037	64944817	0	1	780	0
chr11	64944873	64961189	CD4_Snyder.21630	0	.	64944873	64961189	0	1	16316	0
chr11	64945461	64946262	HeLa_polyA-_Chen.5402	0	.	64945461	64946262	0	1	801	0
chr11	64945474	64965635	prostate_normal.19648	0	+	64945474	64965635	0	3	247,3838,774	0,1374,19387
chr11	64945495	64945893	K562.13163	0	.	64945495	64945893	0	1	398	0
chr11	64945938	64946534	BT474_Burge_Thompson.8823	0	.	64945938	64946534	0	1	596	0
chr11	64946474	64964424	T47D_Burge_Thompson.7950	0	+	64946474	64964424	0	2	6418,54	0,17896
chr11	64946552	64968014	REMC_LuminalBreast.29834	0	+	64946552	64968014	0	1	21462	0
chr11	64946628	64953131	brain_AmbionMAQC.12392	0	.	64946628	64953131	0	1	6503	0
chr11	64946628	64965656	brain_AmbionMAQC.12393	0	-	64946628	64965656	0	2	4872,2001	0,17027
chr11	64946648	64968334	BT474_Burge_Thompson.8834	0	-	64946648	64968334	0	2	6224,24	0,21662
chr11	64946694	64953702	BT20_Thompson.6082	0	.	64946694	64953702	0	1	7008	0
chr11	64946696	64955275	ZR751_Thompson.6836	0	.	64946696	64955275	0	1	8579	0
chr11	64946775	64964679	liver_polyA+.42568	0	-	64946775	64964679	0	3	6122,475,621	0,16803,17283
chr11	64946800	64956630	HeLa_polyA+_Chen.10530	0	+	64946800	64956630	0	4	32,425,89,9136	0,34,541,694
chr11	64946808	64953147	HeLa_Bartel_WT_12hr.9987	0	.	64946808	64953147	0	1	6339	0
chr11	64946810	64952891	HME_Burge.11650	0	.	64946810	64952891	0	1	6081	0
chr11	64946820	64948808	HIT000283550	0	-	64946820	64948808	0	2	610,1135	0,853
chr11	64946833	64963309	MIP101.19479	0	-	64946833	64963309	0	2	14269,2010	0,14466
chr11	64946837	64952829	MDAMB231_Thompson.6296	0	.	64946837	64952829	0	1	5992	0
chr11	64946837	64954901	kidney_Gilad.25067	0	.	64946837	64954901	0	1	8064	0
chr11	64946840	64952954	breast_Burge.11499	0	.	64946840	64952954	0	1	6114	0
chr11	64946842	64953199	MDAMB468_Thompson.7130	0	.	64946842	64953199	0	1	6357	0
chr11	64946843	64957742	K562.13232	0	.	64946843	64957742	0	1	10899	0
chr11	64946851	64966718	melanoma_Garraway_short_term_cultures.18743	0	-	64946851	64966718	0	2	3718,2195	0,17672
chr11	64946851	64957743	MeWo_Garraway.9917	0	.	64946851	64957743	0	1	10892	0
chr11	64946851	64966718	melanoma_Garraway_short_term_cultures.18742	0	.	64946851	64966718	0	1	19867	0
chr11	64946852	64955856	MCF10A_Thompson.6201	0	.	64946852	64955856	0	1	9004	0
chr11	64946852	64948777	HIT000286752	0	-	64946852	64948777	0	2	578,1104	0,821
chr11	64946852	64955279	HeLa_polyA-_Chen.5427	0	.	64946852	64955279	0	1	8427	0
chr11	64946859	64947618	colon_Raymond.37763	0	.	64946859	64947618	0	1	759	0
chr11	64947496	64949198	adipose_Raymond.20578	0	.	64947496	64949198	0	1	1702	0
chr11	64948001	64957742	K562.13231	0	+	64948001	64957742	0	2	3022,5009	0,4732
chr11	64948332	64949134	spleen_Raymond.57616	0	.	64948332	64949134	0	1	802	0
chr11	64948613	64949133	liver_Raymond.12807	0	.	64948613	64949133	0	1	520	0
chr11	64949092	64963731	HIT000061666	0	+	64949092	64963731	0	1	14639	0
chr11	64950660	64952226	heart_Burge.8492	0	.	64950660	64952226	0	1	1566	0
chr11	64950671	64952060	IMR90_UCSD_REMC.14088	0	-	64950671	64952060	0	1	1389	0
chr11	64950922	64952105	HeLa_Bartel_miR-155_12hr.10157	0	.	64950922	64952105	0	1	1183	0
chr11	64951509	64952212	H9_polyA+.12904	0	.	64951509	64952212	0	1	703	0
chr11	64951580	64952022	H1_rRNA-depleted_UCSD_REMC.24954	0	.	64951580	64952022	0	1	442	0
chr11	64951760	64952841	kidney_Raymond.30941	0	.	64951760	64952841	0	1	1081	0
chr11	64952872	64955278	BT474_Burge_Thompson.8835	0	.	64952872	64955278	0	1	2406	0
chr11	64953245	64955277	brain_AmbionMAQC.12394	0	.	64953245	64955277	0	1	2032	0
chr11	64953460	64968459	colon_Raymond.37813	0	-	64953460	64968459	0	2	114,815	0,14184
chr11	64953779	64954512	breast_Burge.11502	0	.	64953779	64954512	0	1	733	0
chr11	64953838	64954521	adipose_Burge.10714	0	.	64953838	64954521	0	1	683	0
chr11	64953898	64955223	MDAMB231_Thompson.6283	0	.	64953898	64955223	0	1	1325	0
chr11	64955930	64961220	kidney_Gilad.25020	0	-	64955930	64961220	0	2	336,3995	0,1295
chr11	64956789	64961173	HeLa_polyA+_Chen.10281	0	.	64956789	64961173	0	1	4384	0
chr11	64957846	64964680	MeWo_Garraway.9918	0	.	64957846	64964680	0	1	6834	0
chr11	64957955	64961009	MCF10A_Thompson.6196	0	.	64957955	64961009	0	1	3054	0
chr11	64958096	64961123	brain_AmbionMAQC.12396	0	.	64958096	64961123	0	1	3027	0
chr11	64959005	64960429	HME_Burge.11621	0	.	64959005	64960429	0	1	1424	0
chr11	64959513	64961174	HeLa_polyA-_Chen.5406	0	.	64959513	64961174	0	1	1661	0
chr11	64961325	64962241	HME_Burge.11623	0	.	64961325	64962241	0	1	916	0
chr11	64961565	64962253	kidney_Raymond.30963	0	.	64961565	64962253	0	1	688	0
chr11	64961760	64962253	skeletal_muscle_Raymond.30593	0	.	64961760	64962253	0	1	493	0
chr11	64961893	64962307	MB435_Burge.12649	0	.	64961893	64962307	0	1	414	0
chr11	64963270	64965240	IMR90_UCSD_REMC.14097	0	-	64963270	64965240	0	1	1970	0
chr11	64964914	64965447	CD4_Snyder.21622	0	.	64964914	64965447	0	1	533	0
chr11	64965519	64966663	CD4_Snyder.21623	0	.	64965519	64966663	0	1	1144	0
chr11	64965917	64966638	MB435_Burge.12653	0	.	64965917	64966638	0	1	721	0
chr11	64966236	64966634	HeLa_polyA-_Chen.5410	0	.	64966236	64966634	0	1	398	0
chr11	64966276	64966660	A549_Myers.21998	0	.	64966276	64966660	0	1	384	0
chr11	64966331	64966677	HeLa_Bartel_miR-155_12hr.9744	0	.	64966331	64966677	0	1	346	0
chr11	64966919	64967663	MeI_Garraway.5005	0	.	64966919	64967663	0	1	744	0
chr11	64967559	64968015	heart_Burge.8525	0	.	64967559	64968015	0	1	456	0
chr11	64967598	64967972	heart_Raymond.19263	0	.	64967598	64967972	0	1	374	0
chr11	64967598	64968459	colon_Raymond.37814	0	.	64967598	64968459	0	1	861	0
chr11	64968032	64968459	heart_Raymond.19265	0	.	64968032	64968459	0	1	427	0
chr11	64968032	64968459	testes_Raymond.49611	0	.	64968032	64968459	0	2	189,164	0,263
chr11	64968049	64968493	testes_Burge.14858	0	.	64968049	64968493	0	1	444	0
chr11	64968065	64968502	colon_Burge.10540	0	.	64968065	64968502	0	1	437	0
chr11	64968080	64968476	heart_Burge.8526	0	.	64968080	64968476	0	1	396	0
chr11	64969833	64974875	REMC_LuminalBreast.29836	0	.	64969833	64974875	0	1	5042	0
chr11	64970105	64971599	REMC_BreastStem.15253	0	.	64970105	64971599	0	1	1494	0
chr11	64971572	64973016	B_cells_Cheung.55500	0	.	64971572	64973016	0	1	1444	0
chr11	64972104	64974863	REMC_MyoepithelialBreast.30587	0	.	64972104	64974863	0	1	2759	0
chr11	64972486	64973721	melanoma_Garraway_short_term_cultures.18752	0	.	64972486	64973721	0	1	1235	0
chr11	64972493	64973952	REMC_BreastStem.15254	0	.	64972493	64973952	0	1	1459	0
chr11	64977930	64978232	melanoma_Garraway_short_term_cultures.18754	0	.	64977930	64978232	0	1	302	0
chr11	64979984	64989277	REMC_LuminalBreast.29839	0	.	64979984	64989277	0	1	9293	0
chr11	64982012	64982328	CD4_Plagnol_resting.17298	0	.	64982012	64982328	0	1	316	0
chr11	64982013	64982370	melanoma_Garraway_short_term_cultures.18759	0	.	64982013	64982370	0	1	357	0
chr11	64982024	64982358	K562.13169	0	.	64982024	64982358	0	1	334	0
chr11	64982027	64982929	HepG2_Caltech_ENCODE.13300	0	.	64982027	64982929	0	1	902	0
chr11	64991234	64993491	REMC_MyoepithelialBreast.30595	0	.	64991234	64993491	0	1	2257	0
chr11	64991278	64993493	REMC_LuminalBreast.29841	0	.	64991278	64993493	0	1	2215	0
chr11	64993919	64997747	REMC_LuminalBreast.29842	0	.	64993919	64997747	0	1	3828	0
chr11	64994061	64996894	REMC_MyoepithelialBreast.30596	0	.	64994061	64996894	0	1	2833	0
chr11	64994090	64996574	REMC_BreastStem.15263	0	.	64994090	64996574	0	1	2484	0
chr11	64994394	64995235	HeLa_polyA-_Chen.5413	0	.	64994394	64995235	0	1	841	0
chr11	64994396	64994932	melanoma_Garraway_short_term_cultures.18773	0	.	64994396	64994932	0	1	536	0
chr11	64994406	64994990	prostate_carcinoma.28923	0	.	64994406	64994990	0	1	584	0
chr11	64994499	64994828	A549_Myers.22008	0	.	64994499	64994828	0	1	329	0
chr11	64995309	64996243	HeLa_polyA-_Chen.5414	0	.	64995309	64996243	0	1	934	0
chr11	64995312	64996608	B_Cells_Pritchard.945707	0	+	64995312	64996608	0	1	1296	0
chr11	64995322	64996526	prostate_carcinoma.28924	0	.	64995322	64996526	0	1	1204	0
chr11	64995326	64996617	melanoma_Garraway_short_term_cultures.18774	0	.	64995326	64996617	0	1	1291	0
chr11	64995334	64996213	CD4_Snyder.21626	0	.	64995334	64996213	0	1	879	0
chr11	64995376	64996022	K562.13175	0	.	64995376	64996022	0	1	646	0
chr11	64997218	65003701	B_Cells_Pritchard.945715	0	-	64997218	65003701	0	5	122,182,1272,568,1453	0,2812,3129,4406,5030
chr11	64998015	64999609	REMC_LuminalBreast.29843	0	.	64998015	64999609	0	1	1594	0
chr11	65000317	65001521	REMC_LuminalBreast.29595	0	.	65000317	65001521	0	1	1204	0
chr11	65000324	65001613	HeLa_polyA-_Chen.5417	0	.	65000324	65001613	0	1	1289	0
chr11	65000338	65002272	B_cells_Cheung.55340	0	.	65000338	65002272	0	1	1934	0
chr11	65000349	65002135	melanoma_Garraway_short_term_cultures.18777	0	.	65000349	65002135	0	1	1786	0
chr11	65000360	65002195	REMC_MyoepithelialBreast.30600	0	.	65000360	65002195	0	1	1835	0
chr11	65000365	65001524	REMC_BreastStem.15264	0	.	65000365	65001524	0	1	1159	0
chr11	65000419	65001552	prostate_carcinoma.28926	0	.	65000419	65001552	0	1	1133	0
chr11	65000480	65001511	K562.13176	0	.	65000480	65001511	0	1	1031	0
chr11	65000530	65001533	CD4_Plagnol_activated.18045	0	.	65000530	65001533	0	1	1003	0
chr11	65000544	65001565	MIP101.19487	0	.	65000544	65001565	0	1	1021	0
chr11	65000975	65001557	CD4_Snyder.21627	0	.	65000975	65001557	0	1	582	0
chr11	65001005	65001321	BT474_Burge_Thompson.8833	0	.	65001005	65001321	0	1	316	0
chr11	65001049	65002137	A549_Myers.22010	0	.	65001049	65002137	0	1	1088	0
chr11	65001671	65002121	CD4_Plagnol_activated.18044	0	.	65001671	65002121	0	1	450	0
chr11	65001690	65002000	CD4_Snyder.21628	0	.	65001690	65002000	0	1	310	0
chr11	65001696	65002117	prostate_normal.16586	0	.	65001696	65002117	0	1	421	0
chr11	65001708	65002095	prostate_carcinoma.28492	0	.	65001708	65002095	0	1	387	0
chr11	65002334	65004508	B_cells_Cheung.55341	0	.	65002334	65004508	0	1	2174	0
chr11	65002582	65003831	REMC_BreastStem.15265	0	.	65002582	65003831	0	1	1249	0
chr11	65002719	65003563	HeLa_polyA-_Chen.5416	0	.	65002719	65003563	0	1	844	0
chr11	65002774	65003525	A549_Myers.22011	0	.	65002774	65003525	0	1	751	0
chr11	65002943	65004669	REMC_LuminalBreast.29598	0	.	65002943	65004669	0	1	1726	0
chr11	65003711	65004117	A549_Myers.22012	0	.	65003711	65004117	0	1	406	0
chr11	65010358	65011837	REMC_LuminalBreast.29602	0	.	65010358	65011837	0	1	1479	0
chr11	65010459	65012882	REMC_MyoepithelialBreast.30602	0	.	65010459	65012882	0	1	2423	0
chr11	65011193	65012048	melanoma_Garraway_short_term_cultures.18778	0	.	65011193	65012048	0	1	855	0
chr11	65011247	65012188	B_cells_Cheung.55349	0	.	65011247	65012188	0	1	941	0
chr11	65011406	65013134	B_Cells_Pritchard.945777	0	.	65011406	65013134	0	1	1728	0
chr11	65013159	65018898	REMC_LuminalBreast.29603	0	.	65013159	65018898	0	1	5739	0
chr11	65013236	65014094	A549_Myers.22014	0	.	65013236	65014094	0	1	858	0
chr11	65013528	65014190	B_Cells_Pritchard.945781	0	.	65013528	65014190	0	1	662	0
chr11	65014202	65014906	A549_Myers.22015	0	.	65014202	65014906	0	1	704	0
chr11	65014455	65014815	B_cells_Cheung.55355	0	.	65014455	65014815	0	1	360	0
chr11	65015618	65016873	HeLa_polyA-_Chen.5422	0	.	65015618	65016873	0	1	1255	0
chr11	65015628	65016840	REMC_BreastStem.15268	0	.	65015628	65016840	0	1	1212	0
chr11	65016332	65017477	REMC_MyoepithelialBreast.30603	0	.	65016332	65017477	0	1	1145	0
chr11	65016532	65019060	B_Cells_Pritchard.1082523	0	+	65016532	65019060	0	1	2528	0
chr11	65018475	65018942	HeLa_polyA-_Chen.5424	0	.	65018475	65018942	0	1	467	0
chr11	65019718	65021551	REMC_LuminalBreast.29604	0	.	65019718	65021551	0	1	1833	0
chr11	65019728	65031060	B_Cells_Pritchard.1082527	0	+	65019728	65031060	0	2	2291,26	0,11306
chr11	65020090	65031996	B_cells_Cheung.55360	0	.	65020090	65031996	0	1	11906	0
chr11	65020191	65021629	REMC_MyoepithelialBreast.30604	0	.	65020191	65021629	0	1	1438	0
chr11	65020819	65021407	CD4_Snyder.21629	0	.	65020819	65021407	0	1	588	0
chr11	65021757	65033115	REMC_LuminalBreast.29605	0	.	65021757	65033115	0	1	11358	0
chr11	65021795	65047377	CD4_Plagnol_resting.17595	0	-	65021795	65047377	0	2	9190,258	0,25324
chr11	65022527	65030518	REMC_BreastStem.18546	0	+	65022527	65030518	0	2	5726,2146	0,5845
chr11	65031470	65032485	REMC_BreastStem.15274	0	.	65031470	65032485	0	1	1015	0
chr11	65033242	65033901	REMC_BreastStem.15276	0	.	65033242	65033901	0	1	659	0
chr11	65033274	65033824	REMC_LuminalBreast.29606	0	.	65033274	65033824	0	1	550	0
chr11	65091669	65092541	CD4_Plagnol_resting.17710	0	.	65091669	65092541	0	1	872	0
chr11	65091687	65092635	brain_AmbionMAQC.12370	0	.	65091687	65092635	0	1	948	0
chr11	65091693	65092512	MCF7_Burge_Thompson.8713	0	.	65091693	65092512	0	1	819	0
chr11	65091702	65092539	K562.13214	0	.	65091702	65092539	0	1	837	0
chr11	65091705	65092527	MIP101.19597	0	.	65091705	65092527	0	1	822	0
chr11	65091707	65092552	CD4_Plagnol_activated.18050	0	.	65091707	65092552	0	1	845	0
chr11	65091711	65092538	melanoma_Garraway_short_term_cultures.18787	0	.	65091711	65092538	0	1	827	0
chr11	65091714	65092692	HeLa_polyA+_Chen.10311	0	.	65091714	65092692	0	1	978	0
chr11	65091723	65092539	lymph_node_Burge.14087	0	.	65091723	65092539	0	1	816	0
chr11	65091727	65092477	T47D_Burge_Thompson.7988	0	.	65091727	65092477	0	1	750	0
chr11	65092528	65094449	HIT000014229	0	-	65092528	65094449	0	1	1921	0
chr11	65092731	65093224	BT474_Burge_Thompson.8845	0	.	65092731	65093224	0	1	493	0
chr11	65093698	65094320	HIT000066756	0	-	65093698	65094320	0	1	622	0
chr11	65188769	65189713	REMC_LuminalBreast.29657	0	.	65188769	65189713	0	1	944	0
chr11	65191948	65192282	prostate_carcinoma.28742	0	.	65191948	65192282	0	1	334	0
chr11	65194920	65195763	B_cells_Cheung.55373	0	.	65194920	65195763	0	1	843	0
chr11	65194933	65195827	MIP101.19608	0	.	65194933	65195827	0	1	894	0
chr11	65194946	65195777	prostate_carcinoma.28745	0	.	65194946	65195777	0	1	831	0
chr11	65194984	65195755	H1_polyA+.33094	0	.	65194984	65195755	0	1	771	0
chr11	65195064	65195749	liver_polyA+.38747	0	.	65195064	65195749	0	1	685	0
chr11	65195168	65195764	melanoma_Garraway_short_term_cultures.18815	0	.	65195168	65195764	0	1	596	0
chr11	65203459	65203918	MIP101.19614	0	.	65203459	65203918	0	1	459	0
chr11	65203460	65203931	prostate_carcinoma.28738	0	.	65203460	65203931	0	1	471	0
chr11	65206202	65207780	prostate_carcinoma.28755	0	.	65206202	65207780	0	1	1578	0
chr11	65206276	65207430	REMC_LuminalBreast.29626	0	.	65206276	65207430	0	1	1154	0
chr11	65206283	65207805	MIP101.19610	0	.	65206283	65207805	0	1	1522	0
chr11	65209418	65210324	prostate_carcinoma.28758	0	.	65209418	65210324	0	1	906	0
chr11	65210553	65210980	prostate_carcinoma.28759	0	.	65210553	65210980	0	1	427	0
chr11	65211329	65212505	prostate_carcinoma.28760	0	.	65211329	65212505	0	1	1176	0
chr11	65216319	65219021	REMC_BreastStem.15308	0	-	65216319	65219021	0	2	544,1250	0,1452
chr11	65217335	65218256	prostate_carcinoma.28766	0	.	65217335	65218256	0	1	921	0
chr11	65217340	65219021	REMC_BreastStem.15309	0	.	65217340	65219021	0	1	1681	0
chr11	65218170	65219005	REMC_LuminalBreast.29628	0	.	65218170	65219005	0	1	835	0
chr11	65218296	65218715	B_Cells_Pritchard.945895	0	.	65218296	65218715	0	1	419	0
chr11	65220797	65221791	REMC_BreastStem.15310	0	.	65220797	65221791	0	1	994	0
chr11	65223229	65225302	REMC_LuminalBreast.29630	0	.	65223229	65225302	0	1	2073	0
chr11	65250276	65250960	REMC_MyoepithelialBreast.27525	0	.	65250276	65250960	0	1	684	0
chr11	65265408	65266118	REMC_LuminalBreast.29644	0	.	65265408	65266118	0	1	710	0
chr11	65266382	65267481	REMC_BreastStem.15295	0	.	65266382	65267481	0	1	1099	0
chr11	65267665	65268796	H1_polyA+.32364	0	.	65267665	65268796	0	1	1131	0
chr11	65267730	65270129	REMC_LuminalBreast.29646	0	.	65267730	65270129	0	1	2399	0
chr11	65267922	65268497	A549_Myers.22065	0	.	65267922	65268497	0	1	575	0
chr11	65268019	65270024	brain_AmbionMAQC.12430	0	.	65268019	65270024	0	1	2005	0
chr11	65268196	65269970	REMC_MyoepithelialBreast.27527	0	.	65268196	65269970	0	1	1774	0
chr11	65269182	65270058	prostate_carcinoma.28537	0	.	65269182	65270058	0	1	876	0
chr11	65269184	65269734	B_Cells_Pritchard.946081	0	.	65269184	65269734	0	1	550	0
chr11	65271081	65276196	REMC_BreastStem.15297	0	.	65271081	65276196	0	1	5115	0
chr11	65271136	65276261	REMC_LuminalBreast.29647	0	.	65271136	65276261	0	1	5125	0
chr11	65274980	65275794	B_Cells_Pritchard.946099	0	.	65274980	65275794	0	1	814	0
chr11	65275174	65277871	REMC_MyoepithelialBreast.27530	0	.	65275174	65277871	0	1	2697	0
chr11	65275176	65275745	prostate_carcinoma.28540	0	.	65275176	65275745	0	1	569	0
chr11	65275221	65276047	melanoma_Garraway_short_term_cultures.18821	0	.	65275221	65276047	0	1	826	0
chr11	65275309	65275995	MIP101.19508	0	.	65275309	65275995	0	1	686	0
chr11	65275370	65276138	H1_polyA+.32368	0	.	65275370	65276138	0	1	768	0
chr11	65276257	65279882	REMC_BreastStem.15298	0	.	65276257	65279882	0	1	3625	0
chr11	65276325	65277940	H1_polyA+.32369	0	.	65276325	65277940	0	1	1615	0
chr11	65276335	65278595	REMC_LuminalBreast.29648	0	.	65276335	65278595	0	1	2260	0
chr11	65282812	65286314	HIT000046083	0	-	65282812	65286314	0	1	3502	0
chr11	65282854	65286283	REMC_LuminalBreast.29652	0	.	65282854	65286283	0	1	3429	0
chr11	65282956	65284079	H1_polyA+.32372	0	.	65282956	65284079	0	1	1123	0
chr11	65283618	65284086	B_cells_Cheung.55395	0	.	65283618	65284086	0	1	468	0
chr11	65286923	65287267	REMC_BreastStem.15303	0	.	65286923	65287267	0	1	344	0
chr11	65287671	65289633	B_cells_Cheung.55398	0	.	65287671	65289633	0	1	1962	0
chr11	65287711	65289673	REMC_LuminalBreast.29653	0	.	65287711	65289673	0	1	1962	0
chr11	65287717	65291426	REMC_BreastStem.15304	0	.	65287717	65291426	0	1	3709	0
chr11	65287784	65289628	B_Cells_Pritchard.946155	0	+	65287784	65289628	0	1	1844	0
chr11	65289848	65291357	B_cells_Cheung.55399	0	.	65289848	65291357	0	1	1509	0
chr11	65293304	65294270	melanoma_Garraway_short_term_cultures.18827	0	.	65293304	65294270	0	1	966	0
chr11	65293326	65294333	H1_polyA+.32379	0	.	65293326	65294333	0	1	1007	0
chr11	65293332	65293634	kidney_Gilad.25108	0	.	65293332	65293634	0	1	302	0
chr11	65293344	65294288	B_cells_Cheung.55403	0	.	65293344	65294288	0	1	944	0
chr11	65293359	65296656	REMC_BreastStem.15306	0	.	65293359	65296656	0	1	3297	0
chr11	65294516	65296194	B_cells_Cheung.55404	0	.	65294516	65296194	0	1	1678	0
chr11	65294544	65295555	CD4_Plagnol_resting.17365	0	.	65294544	65295555	0	1	1011	0
chr11	65294547	65297619	H1_polyA+.32380	0	.	65294547	65297619	0	1	3072	0
chr11	65294577	65296039	melanoma_Garraway_short_term_cultures.18828	0	.	65294577	65296039	0	1	1462	0
chr11	65294668	65295343	CD4_Plagnol_activated.18097	0	.	65294668	65295343	0	1	675	0
chr11	65297846	65299273	kidney_Gilad.25115	0	+	65297846	65299273	0	2	665,446	0,981
chr11	65305672	65307617	H1_polyA+.32383	0	.	65305672	65307617	0	1	1945	0
chr11	65305933	65306271	A549_Myers.22072	0	.	65305933	65306271	0	1	338	0
chr11	65306012	65306380	B_cells_Cheung.55408	0	.	65306012	65306380	0	1	368	0
chr11	65308207	65308889	A549_Myers.22074	0	.	65308207	65308889	0	1	682	0
chr11	65308212	65308630	B_cells_Cheung.55410	0	.	65308212	65308630	0	1	418	0
chr11	65325174	65325699	B_Cells_Pritchard.946279	0	.	65325174	65325699	0	1	525	0
chr11	65325452	65326504	REMC_LuminalBreast.29661	0	.	65325452	65326504	0	1	1052	0
chr11	65328319	65329796	REMC_LuminalBreast.29664	0	.	65328319	65329796	0	1	1477	0
chr11	65330883	65335563	H1_polyA+.32385	0	.	65330883	65335563	0	1	4680	0
chr11	65330946	65335550	B_Cells_Pritchard.946299	0	+	65330946	65335550	0	2	684,1274	0,3330
chr11	65331015	65331603	REMC_MyoepithelialBreast.27543	0	.	65331015	65331603	0	1	588	0
chr11	65331891	65335577	REMC_LuminalBreast.29667	0	.	65331891	65335577	0	1	3686	0
chr11	65332046	65333086	REMC_MyoepithelialBreast.27544	0	.	65332046	65333086	0	1	1040	0
chr11	65332062	65333411	melanoma_Garraway_short_term_cultures.18834	0	.	65332062	65333411	0	1	1349	0
chr11	65332076	65335523	prostate_carcinoma.28548	0	.	65332076	65335523	0	1	3447	0
chr11	65332088	65333856	B_Cells_Pritchard.946305	0	+	65332088	65333856	0	1	1768	0
chr11	65332101	65334008	B_cells_Cheung.55417	0	.	65332101	65334008	0	1	1907	0
chr11	65333070	65334065	BT474_Burge_Thompson.9001	0	.	65333070	65334065	0	1	995	0
chr11	65333172	65333924	brain_AmbionMAQC.12453	0	.	65333172	65333924	0	1	752	0
chr11	65333508	65333970	MCF7_Burge_Thompson.8502	0	.	65333508	65333970	0	1	462	0
chr11	65333559	65335557	melanoma_Garraway_short_term_cultures.18835	0	.	65333559	65335557	0	1	1998	0
chr11	65334089	65334909	B_cells_Cheung.55418	0	.	65334089	65334909	0	1	820	0
chr11	65334090	65334719	brain_AmbionMAQC.12454	0	.	65334090	65334719	0	1	629	0
chr11	65334109	65334724	prostate_normal.16611	0	.	65334109	65334724	0	1	615	0
chr11	65334423	65334847	A549_Myers.22081	0	.	65334423	65334847	0	1	424	0
chr11	65335707	65336735	REMC_BreastStem.15326	0	.	65335707	65336735	0	1	1028	0
chr11	65335721	65340335	REMC_LuminalBreast.29668	0	.	65335721	65340335	0	1	4614	0
chr11	65335818	65336663	melanoma_Garraway_short_term_cultures.18836	0	.	65335818	65336663	0	1	845	0
chr11	65335858	65336689	B_Cells_Pritchard.946309	0	.	65335858	65336689	0	1	831	0
chr11	65337839	65340030	B_cells_Cheung.55423	0	.	65337839	65340030	0	1	2191	0
chr11	65337839	65342274	B_cells_Cheung.55422	0	-	65337839	65342274	0	2	1884,238	0,4197
chr11	65340434	65341330	B_cells_Cheung.55426	0	.	65340434	65341330	0	1	896	0
chr11	65340570	65342268	H1_polyA+.32391	0	.	65340570	65342268	0	1	1698	0
chr11	65341427	65342274	B_cells_Cheung.55424	0	.	65341427	65342274	0	1	847	0
chr11	65341615	65342272	prostate_carcinoma.28558	0	.	65341615	65342272	0	1	657	0
chr11	65343443	65346007	REMC_LuminalBreast.29671	0	.	65343443	65346007	0	1	2564	0
chr11	65344704	65345641	REMC_MyoepithelialBreast.27548	0	.	65344704	65345641	0	1	937	0
chr11	65428887	65430464	REMC_LuminalBreast.30219	0	.	65428887	65430464	0	1	1577	0
chr11	65431467	65434780	REMC_LuminalBreast.30221	0	.	65431467	65434780	0	1	3313	0
chr11	65435689	65436134	A549_Myers.22148	0	.	65435689	65436134	0	1	445	0
chr11	65438706	65439074	A549_Myers.22149	0	.	65438706	65439074	0	1	368	0
chr11	65439154	65439648	A549_Myers.22150	0	.	65439154	65439648	0	1	494	0
chr11	65445973	65446623	B_Cells_Pritchard.946733	0	-	65445973	65446623	0	1	650	0
chr11	65448334	65455045	REMC_LuminalBreast.29677	0	.	65448334	65455045	0	1	6711	0
chr11	65448334	65455045	REMC_LuminalBreast.29676	0	+	65448334	65455045	0	2	4920,1679	0,5032
chr11	65448403	65450065	B_Cells_Pritchard.946739	0	-	65448403	65450065	0	1	1662	0
chr11	65449144	65450091	H1_polyA+.32413	0	.	65449144	65450091	0	1	947	0
chr11	65455187	65463353	REMC_LuminalBreast.29678	0	.	65455187	65463353	0	1	8166	0
chr11	65505716	65506511	BT474_Burge_Thompson.9028	0	.	65505716	65506511	0	1	795	0
chr11	65505772	65506452	REMC_BreastStem.15366	0	.	65505772	65506452	0	1	680	0
chr11	65506555	65507132	CD4_Plagnol_activated.18134	0	.	65506555	65507132	0	1	577	0
chr11	65508674	65510203	REMC_MyoepithelialBreast.28209	0	.	65508674	65510203	0	1	1529	0
chr11	65509074	65509977	REMC_BreastStem.15367	0	.	65509074	65509977	0	1	903	0
chr11	65509323	65510087	B_cells_Cheung.55509	0	.	65509323	65510087	0	1	764	0
chr11	65510559	65511712	REMC_LuminalBreast.29682	0	.	65510559	65511712	0	1	1153	0
chr11	65510567	65513473	REMC_MyoepithelialBreast.28210	0	.	65510567	65513473	0	1	2906	0
chr11	65510567	65511724	REMC_BreastStem.15368	0	.	65510567	65511724	0	1	1157	0
chr11	65511290	65511675	BT474_Burge_Thompson.9031	0	.	65511290	65511675	0	1	385	0
chr11	65512006	65513304	REMC_BreastStem.15369	0	.	65512006	65513304	0	1	1298	0
chr11	65513931	65514246	B_Cells_Pritchard.947055	0	-	65513931	65514246	0	1	315	0
chr11	65514253	65517407	REMC_LuminalBreast.29685	0	.	65514253	65517407	0	1	3154	0
chr11	65515143	65517465	REMC_MyoepithelialBreast.28211	0	.	65515143	65517465	0	1	2322	0
chr11	65516036	65517262	ZR751_Thompson.6868	0	.	65516036	65517262	0	1	1226	0
chr11	65529319	65531082	B_cells_Cheung.55525	0	.	65529319	65531082	0	1	1763	0
chr11	65530403	65530888	BT20_Thompson.6128	0	.	65530403	65530888	0	1	485	0
chr11	65530433	65531243	melanoma_Garraway_short_term_cultures.18888	0	.	65530433	65531243	0	1	810	0
chr11	65531253	65533350	REMC_MyoepithelialBreast.27569	0	.	65531253	65533350	0	1	2097	0
chr11	65531973	65532991	MDAMB231_Thompson.6323	0	.	65531973	65532991	0	1	1018	0
chr11	65532235	65533274	BT20_Thompson.6129	0	.	65532235	65533274	0	1	1039	0
chr11	65532740	65533357	REMC_LuminalBreast.29693	0	.	65532740	65533357	0	1	617	0
chr11	65538884	65539361	BT474_Burge_Thompson.9036	0	.	65538884	65539361	0	1	477	0
chr11	65538919	65539781	MCF7_Burge_Thompson.8527	0	.	65538919	65539781	0	1	862	0
chr11	65558445	65560235	HIT000015628	0	-	65558445	65560235	0	1	1790	0
chr11	65558691	65561329	H1_polyA+.32432	0	.	65558691	65561329	0	1	2638	0
chr11	65769872	65772191	MDAMB231_Thompson.6346	0	.	65769872	65772191	0	1	2319	0
chr11	65769875	65772129	HepG2_Caltech_ENCODE.10248	0	.	65769875	65772129	0	1	2254	0
chr11	65769899	65772074	MDAMB468_Thompson.7311	0	.	65769899	65772074	0	1	2175	0
chr11	65769905	65771789	brain_AmbionMAQC.12952	0	.	65769905	65771789	0	1	1884	0
chr11	65769920	65771822	ZR751_Thompson.6964	0	.	65769920	65771822	0	1	1902	0
chr11	65769943	65772017	MeWo_Garraway.9992	0	.	65769943	65772017	0	1	2074	0
chr11	65769951	65771944	liver_polyA+.38847	0	.	65769951	65771944	0	1	1993	0
chr11	65770004	65774261	HeLa_polyA+_Chen.10373	0	.	65770004	65774261	0	1	4257	0
chr11	65770014	65770557	lymph_node_Burge.13825	0	.	65770014	65770557	0	1	543	0
chr11	65770123	65770478	HME_Burge.11791	0	.	65770123	65770478	0	1	355	0
chr11	65770200	65770779	testes_Burge.14976	0	.	65770200	65770779	0	1	579	0
chr11	65770241	65771831	MeI_Garraway.5055	0	.	65770241	65771831	0	1	1590	0
chr11	65772628	65775281	CD4_Plagnol_activated.18477	0	.	65772628	65775281	0	1	2653	0
chr11	65772633	65775339	B_cells_Cheung.56173	0	.	65772633	65775339	0	1	2706	0
chr11	65772673	65775284	melanoma_Garraway_short_term_cultures.18898	0	.	65772673	65775284	0	1	2611	0
chr11	65773190	65775010	prostate_normal.16645	0	.	65773190	65775010	0	1	1820	0
chr11	65774410	65775198	HeLa_polyA+_Chen.10374	0	.	65774410	65775198	0	1	788	0
chr11	65775694	65776280	HeLa_polyA+_Chen.10375	0	.	65775694	65776280	0	1	586	0
chr11	65775703	65776351	B_cells_Cheung.56175	0	.	65775703	65776351	0	1	648	0
chr11	65775708	65776491	CD4_Plagnol_activated.18478	0	.	65775708	65776491	0	1	783	0
chr11	65775722	65776476	B_Cells_Pritchard.950057	0	+	65775722	65776476	0	1	754	0
chr11	65775841	65776353	MCF7_Burge_Thompson.8753	0	.	65775841	65776353	0	1	512	0
chr11	65775863	65776268	A549_Myers.22175	0	.	65775863	65776268	0	1	405	0
chr11	65835777	65836394	pHIT000020020	0	-	65835777	65836394	0	2	69,423	0,194
chr11	65835857	65837466	H1_polyA+.32508	0	.	65835857	65837466	0	1	1609	0
chr11	65835939	65836492	H9_polyA+.12993	0	.	65835939	65836492	0	1	553	0
chr11	65847931	65848770	melanoma_Garraway_short_term_cultures.18915	0	.	65847931	65848770	0	1	839	0
chr11	65849034	65849739	A549_Myers.22160	0	.	65849034	65849739	0	1	705	0
chr11	65851509	65852303	melanoma_Garraway_short_term_cultures.18916	0	.	65851509	65852303	0	1	794	0
chr11	65852358	65853089	REMC_MyoepithelialBreast.27597	0	.	65852358	65853089	0	1	731	0
chr11	65932870	65939560	prostate_normal.16674	0	+	65932870	65939560	0	2	639,5361	0,1329
chr11	65932967	65940855	H1_polyA+.32519	0	+	65932967	65940855	0	2	2058,16	0,7872
chr11	65932967	65937079	H1_polyA+.32517	0	.	65932967	65937079	0	1	4112	0
chr11	65933137	65933552	H9_polyA+.13004	0	.	65933137	65933552	0	1	415	0
chr11	65933204	65934050	ENST00000527061	0	+	65933204	65934050	0	2	305,162	0,684
chr11	65933240	65941184	ENST00000533759	0	+	65933240	65941184	0	4	269,216,118,345	0,959,1662,7599
chr11	65933346	65934051	H9_polyA-_Chen.4095	0	.	65933346	65934051	0	1	705	0
chr11	65933366	65935011	MCF10A_Thompson.6242	0	.	65933366	65935011	0	1	1645	0
chr11	65933526	65939560	prostate_normal.16675	0	.	65933526	65939560	0	1	6034	0
chr11	65933590	65935022	brain_AmbionMAQC.12512	0	.	65933590	65935022	0	1	1432	0
chr11	65933602	65935134	B_Cells_Pritchard.948011	0	.	65933602	65935134	0	1	1532	0
chr11	65933633	65941270	H9_polyA+.13005	0	+	65933633	65941270	0	2	1387,431	0,7206
chr11	65933952	65934614	colon_Burge.10717	0	.	65933952	65934614	0	1	662	0
chr11	65937239	65939915	H1_polyA+.32520	0	.	65937239	65939915	0	1	2676	0
chr11	65937639	65938155	A549_Myers.22193	0	.	65937639	65938155	0	1	516	0
chr11	65937823	65938546	B_Cells_Pritchard.948025	0	.	65937823	65938546	0	1	723	0
chr11	65938008	65939644	prostate_carcinoma.28770	0	.	65938008	65939644	0	1	1636	0
chr11	65938486	65939783	MCF10A_Thompson.6243	0	.	65938486	65939783	0	1	1297	0
chr11	65939673	65941317	prostate_normal.16676	0	.	65939673	65941317	0	1	1644	0
chr11	65940024	65941197	H1_polyA+.32518	0	.	65940024	65941197	0	1	1173	0
chr11	65941348	65943938	H1_polyA+.32521	0	.	65941348	65943938	0	1	2590	0
chr11	65942447	65944049	prostate_normal.16680	0	.	65942447	65944049	0	1	1602	0
chr11	65943194	65944000	B_cells_Cheung.55555	0	.	65943194	65944000	0	1	806	0
chr11	66101787	66103863	H1_polyA+.32556	0	.	66101787	66103863	0	1	2076	0
chr11	66107145	66107658	H1_polyA+.32557	0	.	66107145	66107658	0	1	513	0
chr11	66132946	66138557	REMC_LuminalBreast.29825	0	.	66132946	66138557	0	1	5611	0
chr11	66132991	66138523	B_cells_Cheung.55726	0	.	66132991	66138523	0	1	5532	0
chr11	66134304	66134651	CD4_Plagnol_resting.17511	0	.	66134304	66134651	0	1	347	0
chr11	66135558	66136701	REMC_MyoepithelialBreast.27631	0	.	66135558	66136701	0	1	1143	0
chr11	66204862	66207204	REMC_MyoepithelialBreast.27821	0	.	66204862	66207204	0	1	2342	0
chr11	66205004	66207188	H1_polyA+.32576	0	.	66205004	66207188	0	1	2184	0
chr11	66205046	66207128	REMC_LuminalBreast.29847	0	.	66205046	66207128	0	1	2082	0
chr11	66206526	66207202	HeLa_polyA+_Chen.10424	0	.	66206526	66207202	0	1	676	0
chr11	66206589	66207101	BT20_Thompson.6166	0	.	66206589	66207101	0	1	512	0
chr11	66206593	66207130	H9_polyA+.13056	0	.	66206593	66207130	0	1	537	0
chr11	66206594	66207128	K562.13326	0	.	66206594	66207128	0	1	534	0
chr11	66206624	66207143	MDAMB468_Thompson.7204	0	.	66206624	66207143	0	1	519	0
chr11	66206639	66207146	ZR751_Thompson.6957	0	.	66206639	66207146	0	1	507	0
chr11	66206642	66207185	brain_AmbionMAQC.12637	0	.	66206642	66207185	0	1	543	0
chr11	66495179	66495637	A549_Myers.22324	0	.	66495179	66495637	0	1	458	0
chr11	66576075	66576522	A549_Myers.22340	0	.	66576075	66576522	0	1	447	0
chr11	66596387	66596991	kidney_Gilad.25373	0	-	66596387	66596991	0	2	137,172	0,432
chr11	66599006	66602011	REMC_LuminalBreast.29881	0	.	66599006	66602011	0	1	3005	0
chr11	66599922	66600717	B_Cells_Pritchard.949771	0	-	66599922	66600717	0	1	795	0
chr11	66600351	66600770	T47D_Burge_Thompson.8084	0	.	66600351	66600770	0	1	419	0
chr11	66600489	66600794	MCF7_Burge_Thompson.8622	0	.	66600489	66600794	0	1	305	0
chr11	66601715	66602223	A549_Myers.22349	0	.	66601715	66602223	0	1	508	0
chr11	66602067	66602698	B_Cells_Pritchard.949779	0	-	66602067	66602698	0	1	631	0
chr11	66602067	66602755	MCF7_Burge_Thompson.8623	0	.	66602067	66602755	0	1	688	0
chr11	66602254	66602906	REMC_LuminalBreast.29882	0	.	66602254	66602906	0	1	652	0
chr11	66604113	66604724	REMC_LuminalBreast.29884	0	.	66604113	66604724	0	1	611	0
chr11	66605875	66606824	REMC_LuminalBreast.29885	0	.	66605875	66606824	0	1	949	0
chr11	66605969	66606515	BT474_Burge_Thompson.9121	0	.	66605969	66606515	0	1	546	0
chr11	66606172	66606484	B_Cells_Pritchard.949805	0	-	66606172	66606484	0	1	312	0
chr11	66622508	66623533	B_Cells_Pritchard.950187	0	+	66622508	66623533	0	1	1025	0
chr11	66622530	66623461	BT474_Burge_Thompson.9124	0	.	66622530	66623461	0	1	931	0
chr11	66625990	66626512	BT474_Burge_Thompson.9125	0	.	66625990	66626512	0	1	522	0
chr11	66627583	66628290	B_Cells_Pritchard.950201	0	+	66627583	66628290	0	1	707	0
chr11	66627716	66628264	BT474_Burge_Thompson.9127	0	.	66627716	66628264	0	1	548	0
chr11	66627770	66628122	B_cells_Cheung.55717	0	.	66627770	66628122	0	1	352	0
chr11	66627813	66628260	H1_polyA+.32647	0	.	66627813	66628260	0	1	447	0
chr11	66638883	66639585	B_Cells_Pritchard.950247	0	+	66638883	66639585	0	1	702	0
chr11	66641701	66642211	A549_Myers.22352	0	.	66641701	66642211	0	1	510	0
chr11	66641965	66642277	testes_Burge.15152	0	.	66641965	66642277	0	1	312	0
chr11	66784450	66784981	B_Cells_Pritchard.949907	0	.	66784450	66784981	0	1	531	0
chr11	66785323	66785933	A549_Myers.22361	0	.	66785323	66785933	0	1	610	0
chr11	66785895	66786766	REMC_MyoepithelialBreast.27765	0	.	66785895	66786766	0	1	871	0
chr11	66811610	66812305	melanoma_Garraway_short_term_cultures.19084	0	.	66811610	66812305	0	1	695	0
chr11	66811628	66811946	MB435_Burge.12309	0	.	66811628	66811946	0	1	318	0
chr11	66840376	66871021	B_Cells_Pritchard.950129	0	+	66840376	66871021	0	8	19,537,2635,2089,174,1730,1504,61	0,1331,4940,11998,15273,15567,29076,30584
chr11	66840870	66871021	B_Cells_Pritchard.950131	0	-	66840870	66871021	0	6	2055,2786,94,594,1948,65	0,4282,11170,16222,28086,30086
chr11	66840922	66864715	REMC_LuminalBreast.30072	0	.	66840922	66864715	0	1	23793	0
chr11	66841133	66842300	K562.13382	0	.	66841133	66842300	0	1	1167	0
chr11	66841241	66842347	A549_Myers.22378	0	.	66841241	66842347	0	1	1106	0
chr11	66841267	66841768	H1_polyA+.32735	0	.	66841267	66841768	0	1	501	0
chr11	66841274	66858315	BT474_Burge_Thompson.9669	0	+	66841274	66858315	0	3	970,169,22	0,4042,17019
chr11	66841634	66842176	testes_Burge.15158	0	.	66841634	66842176	0	1	542	0
chr11	66841677	66842222	CD4_Plagnol_activated.18271	0	.	66841677	66842222	0	1	545	0
chr11	66841765	66848757	melanoma_Garraway_short_term_cultures.19096	0	+	66841765	66848757	0	2	479,3441	0,3551
chr11	66841883	66842239	brain_AmbionMAQC.13158	0	.	66841883	66842239	0	1	356	0
chr11	66841891	66842227	MeWo_Garraway.10116	0	.	66841891	66842227	0	1	336	0
chr11	66841892	66842245	MeI_Garraway.5122	0	.	66841892	66842245	0	1	353	0
chr11	66848203	66851106	B_cells_Cheung.55747	0	.	66848203	66851106	0	1	2903	0
chr11	66852146	66853315	REMC_MyoepithelialBreast.27780	0	.	66852146	66853315	0	1	1169	0
chr11	66854725	66855136	MIP101.20139	0	.	66854725	66855136	0	1	411	0
chr11	66854735	66855144	K562.13383	0	.	66854735	66855144	0	1	409	0
chr11	66854800	66855149	A549_Myers.22381	0	.	66854800	66855149	0	1	349	0
chr11	66854812	66855154	B_Cells_Pritchard.950149	0	-	66854812	66855154	0	1	342	0
chr11	66864839	66874529	REMC_LuminalBreast.30074	0	.	66864839	66874529	0	1	9690	0
chr11	66865398	66866313	REMC_BreastStem.15472	0	.	66865398	66866313	0	1	915	0
chr11	66865445	66866147	REMC_MyoepithelialBreast.27785	0	.	66865445	66866147	0	1	702	0
chr11	66865446	66866018	H1_polyA+.32745	0	.	66865446	66866018	0	1	572	0
chr11	66866269	66871017	REMC_MyoepithelialBreast.27787	0	.	66866269	66871017	0	1	4748	0
chr11	66867525	66871040	REMC_BreastStem.15474	0	.	66867525	66871040	0	1	3515	0
chr11	66868968	66871005	melanoma_Garraway_short_term_cultures.19112	0	.	66868968	66871005	0	1	2037	0
chr11	66869023	66871031	H1_polyA+.32748	0	.	66869023	66871031	0	1	2008	0
chr11	66869354	66870899	CD4_Plagnol_activated.18273	0	.	66869354	66870899	0	1	1545	0
chr11	66870150	66870867	CD4_Plagnol_resting.17610	0	.	66870150	66870867	0	1	717	0
chr11	66870154	66870875	HeLa_polyA+_Chen.10511	0	.	66870154	66870875	0	1	721	0
chr11	66870195	66870890	prostate_normal.17528	0	.	66870195	66870890	0	1	695	0
chr11	66870209	66870889	T47D_Burge_Thompson.8105	0	.	66870209	66870889	0	1	680	0
chr11	66870212	66870932	liver_polyA+.39211	0	.	66870212	66870932	0	1	720	0
chr11	66870242	66870890	ZR751_Thompson.7056	0	.	66870242	66870890	0	1	648	0
chr11	66873590	66874000	H9_polyA+.13087	0	.	66873590	66874000	0	1	410	0
chr11	66881668	66882828	HeLa_polyA+_Chen.10516	0	.	66881668	66882828	0	1	1160	0
chr11	66881859	66882467	MCF7_Burge_Thompson.10075	0	.	66881859	66882467	0	1	608	0
chr11	66882400	66882881	CD4_Plagnol_resting.17616	0	.	66882400	66882881	0	1	481	0
chr11	66899638	66900439	REMC_MyoepithelialBreast.27793	0	.	66899638	66900439	0	1	801	0
chr11	66899712	66900196	BT474_Burge_Thompson.9686	0	.	66899712	66900196	0	1	484	0
chr11	66899823	66900597	B_Cells_Pritchard.950475	0	.	66899823	66900597	0	1	774	0
chr11	66899922	66900905	prostate_carcinoma.33335	0	.	66899922	66900905	0	1	983	0
chr11	66901102	66901437	B_Cells_Pritchard.950479	0	.	66901102	66901437	0	1	335	0
chr11	66902524	66904074	B_Cells_Pritchard.950483	0	.	66902524	66904074	0	1	1550	0
chr11	66902631	66903301	H1_polyA+.32757	0	.	66902631	66903301	0	1	670	0
chr11	66902641	66903677	REMC_MyoepithelialBreast.27795	0	.	66902641	66903677	0	1	1036	0
chr11	66903360	66912902	prostate_normal.17651	0	-	66903360	66912902	0	2	325,87	0,9455
chr11	66903463	66903987	MCF7_Burge_Thompson.10082	0	.	66903463	66903987	0	1	524	0
chr11	66903541	66904086	prostate_normal.17650	0	.	66903541	66904086	0	1	545	0
chr11	66904528	66907319	B_cells_Cheung.55764	0	.	66904528	66907319	0	1	2791	0
chr11	66904530	66904869	REMC_LuminalBreast.30091	0	.	66904530	66904869	0	1	339	0
chr11	66904624	66905173	H1_polyA+.32758	0	.	66904624	66905173	0	1	549	0
chr11	66904635	66905258	prostate_carcinoma.33337	0	.	66904635	66905258	0	1	623	0
chr11	66907615	66907986	prostate_carcinoma.33384	0	.	66907615	66907986	0	1	371	0
chr11	66908438	66909616	REMC_LuminalBreast.30093	0	.	66908438	66909616	0	1	1178	0
chr11	66908475	66909727	H1_polyA+.32760	0	.	66908475	66909727	0	1	1252	0
chr11	66908482	66909457	REMC_MyoepithelialBreast.27796	0	.	66908482	66909457	0	1	975	0
chr11	66908879	66909467	prostate_normal.17652	0	.	66908879	66909467	0	1	588	0
chr11	66968846	66969812	MIP101.20159	0	.	66968846	66969812	0	1	966	0
chr11	66969942	66970608	CD4_Plagnol_resting.19458	0	.	66969942	66970608	0	1	666	0
chr11	66970707	66972930	B_cells_Cheung.55813	0	.	66970707	66972930	0	1	2223	0
chr11	66972025	66972871	CD4_Plagnol_activated.18347	0	.	66972025	66972871	0	1	846	0
chr11	66973085	66973923	B_cells_Cheung.55814	0	.	66973085	66973923	0	1	838	0
chr11	67067377	67067758	A549_Myers.22435	0	.	67067377	67067758	0	1	381	0
chr11	67141004	67143113	K562.13491	0	.	67141004	67143113	0	1	2109	0
chr11	67142149	67142452	liver_polyA+.39266	0	.	67142149	67142452	0	1	303	0
chr11	67144048	67144960	K562.13490	0	-	67144048	67144960	0	2	206,575	0,337
chr11	67144048	67144960	K562.13489	0	.	67144048	67144960	0	1	912	0
chr11	67144375	67145020	H9_polyA-_Chen.4143	0	.	67144375	67145020	0	1	645	0
chr11	67144603	67145074	H1_rRNA-depleted_UCSD_REMC.25434	0	.	67144603	67145074	0	1	471	0
chr11	67145257	67146349	K562.13492	0	.	67145257	67146349	0	1	1092	0
chr11	67145899	67146305	H9_polyA-_Chen.4144	0	.	67145899	67146305	0	1	406	0
chr11	67145906	67146359	H1_rRNA-depleted_UCSD_REMC.25435	0	.	67145906	67146359	0	1	453	0
chr11	67146820	67147455	K562.13493	0	.	67146820	67147455	0	1	635	0
chr11	67146872	67150788	HIT000196611	0	+	67146872	67150788	0	1	3916	0
chr11	67146872	67150792	HIT000322071	0	+	67146872	67150792	0	1	3920	0
chr11	67164679	67165090	A549_Myers.22454	0	.	67164679	67165090	0	1	411	0
chr11	67221810	67225757	HIT000055899	0	+	67221810	67225757	0	1	3947	0
chr11	67646861	67647468	H1_polyA+.32844	0	.	67646861	67647468	0	1	607	0
chr11	67646979	67647351	A549_Myers.22489	0	.	67646979	67647351	0	1	372	0
chr11	67647814	67648464	B_cells_Cheung.55893	0	.	67647814	67648464	0	1	650	0
chr11	67647832	67652523	H1_polyA+.32847	0	.	67647832	67652523	0	1	4691	0
chr11	67648737	67649690	B_Cells_Pritchard.951417	0	.	67648737	67649690	0	1	953	0
chr11	67650008	67650342	B_Cells_Pritchard.951419	0	.	67650008	67650342	0	1	334	0
chr11	67651568	67652262	MCF7_Burge_Thompson.8703	0	.	67651568	67652262	0	1	694	0
chr11	67651758	67652286	B_Cells_Pritchard.951425	0	.	67651758	67652286	0	1	528	0
chr11	67651892	67652257	B_cells_Cheung.55894	0	.	67651892	67652257	0	1	365	0
chr11	67652400	67658121	B_Cells_Pritchard.951427	0	+	67652400	67658121	0	3	1725,211,226	0,1821,5495
chr11	67652514	67654498	BT474_Burge_Thompson.9191	0	.	67652514	67654498	0	1	1984	0
chr11	67652606	67654072	HepG2_Caltech_ENCODE.10385	0	+	67652606	67654072	0	2	699,180	0,1286
chr11	67652679	67653406	T47D_Burge_Thompson.8182	0	.	67652679	67653406	0	1	727	0
chr11	67666264	67666978	A549_Myers.22492	0	.	67666264	67666978	0	1	714	0
chr11	67668604	67669950	BT474_Burge_Thompson.9193	0	.	67668604	67669950	0	1	1346	0
chr11	67670286	67670729	A549_Myers.22494	0	.	67670286	67670729	0	1	443	0
chr11	67782294	67782667	A549_Myers.22512	0	.	67782294	67782667	0	1	373	0
chr11	67782502	67783035	melanoma_Garraway_short_term_cultures.19217	0	.	67782502	67783035	0	1	533	0
chr11	67805844	67812300	B_Cells_Pritchard.951925	0	-	67805844	67812300	0	4	1870,803,196,335	0,2014,2835,6121
chr11	67806680	67807253	BT474_Burge_Thompson.9229	0	.	67806680	67807253	0	1	573	0
chr11	67821718	67822051	B_Cells_Pritchard.951983	0	.	67821718	67822051	0	1	333	0
chr11	67822249	67822761	B_Cells_Pritchard.951985	0	.	67822249	67822761	0	1	512	0
chr11	67822872	67823627	B_Cells_Pritchard.951987	0	.	67822872	67823627	0	1	755	0
chr11	67822923	67823498	A549_Myers.22525	0	.	67822923	67823498	0	1	575	0
chr11	67831173	67832671	HepG2_Caltech_ENCODE.10406	0	.	67831173	67832671	0	1	1498	0
chr11	67834831	67835474	H1_polyA+.32884	0	.	67834831	67835474	0	1	643	0
chr11	67834934	67835421	prostate_carcinoma.29255	0	.	67834934	67835421	0	1	487	0
chr11	67979404	67980335	B_Cells_Pritchard.953085	0	-	67979404	67980335	0	1	931	0
chr11	67981705	67982360	B_cells_Cheung.55998	0	.	67981705	67982360	0	1	655	0
chr11	67981718	67982365	B_Cells_Pritchard.953091	0	-	67981718	67982365	0	1	647	0
chr11	68146433	68147179	REMC_BreastStem.15568	0	.	68146433	68147179	0	1	746	0
chr11	68147542	68148128	REMC_MyoepithelialBreast.27986	0	.	68147542	68148128	0	1	586	0
chr11	68148436	68149522	REMC_MyoepithelialBreast.27987	0	.	68148436	68149522	0	1	1086	0
chr11	68149977	68151158	REMC_MyoepithelialBreast.27988	0	.	68149977	68151158	0	1	1181	0
chr11	68150019	68150871	REMC_BreastStem.15569	0	.	68150019	68150871	0	1	852	0
chr11	68151689	68152164	REMC_MyoepithelialBreast.27989	0	.	68151689	68152164	0	1	475	0
chr11	68151752	68152177	REMC_BreastStem.15571	0	.	68151752	68152177	0	1	425	0
chr11	68158516	68159411	REMC_MyoepithelialBreast.27907	0	.	68158516	68159411	0	1	895	0
chr11	68158594	68159213	H1_polyA+.32968	0	.	68158594	68159213	0	1	619	0
chr11	68159876	68160517	H1_polyA+.32969	0	.	68159876	68160517	0	1	641	0
chr11	68165539	68166352	H1_polyA+.32972	0	.	68165539	68166352	0	1	813	0
chr11	68187636	68187937	A549_Myers.22590	0	.	68187636	68187937	0	1	301	0
chr11	68191334	68191795	MCF7_Burge_Thompson.8759	0	.	68191334	68191795	0	1	461	0
chr11	68191489	68191802	ZR751_Thompson.7022	0	.	68191489	68191802	0	1	313	0
chr11	68191507	68191888	BT474_Burge_Thompson.9254	0	.	68191507	68191888	0	1	381	0
chr11	68191545	68191862	B_Cells_Pritchard.952347	0	.	68191545	68191862	0	1	317	0
chr11	68228812	68229825	H1_polyA+.32977	0	.	68228812	68229825	0	1	1013	0
chr11	68228902	68229723	prostate_carcinoma.28989	0	.	68228902	68229723	0	1	821	0
chr11	68228912	68229738	BT474_Burge_Thompson.9257	0	.	68228912	68229738	0	1	826	0
chr11	68228952	68229491	H9_polyA+.13205	0	.	68228952	68229491	0	1	539	0
chr11	68390882	68391575	H1_polyA+.32997	0	.	68390882	68391575	0	1	693	0
chr11	68391049	68391491	prostate_carcinoma.29102	0	.	68391049	68391491	0	1	442	0
chr11	68391913	68394381	H1_polyA+.32998	0	.	68391913	68394381	0	1	2468	0
chr11	68392542	68394359	REMC_LuminalBreast.30164	0	.	68392542	68394359	0	1	1817	0
chr11	68393903	68394348	HepG2_Caltech_ENCODE.10463	0	.	68393903	68394348	0	1	445	0
chr11	68393912	68394367	prostate_carcinoma.29103	0	.	68393912	68394367	0	1	455	0
chr11	68394479	68394910	REMC_MyoepithelialBreast.27925	0	.	68394479	68394910	0	1	431	0
chr11	68394707	68398586	ENST00000512200	0	+	68394707	68398586	0	2	252,3000	0,879
chr11	68395074	68397189	REMC_MyoepithelialBreast.27926	0	.	68395074	68397189	0	1	2115	0
chr11	68395123	68398095	H1_polyA+.33000	0	.	68395123	68398095	0	1	2972	0
chr11	68400036	68403209	REMC_MyoepithelialBreast.27927	0	.	68400036	68403209	0	1	3173	0
chr11	68400287	68402662	H1_polyA+.33003	0	.	68400287	68402662	0	1	2375	0
chr11	68401519	68402726	B_cells_Cheung.56062	0	.	68401519	68402726	0	1	1207	0
chr11	68401563	68402487	B_Cells_Pritchard.953493	0	+	68401563	68402487	0	1	924	0
chr11	68401918	68403258	REMC_LuminalBreast.30170	0	.	68401918	68403258	0	1	1340	0
chr11	68401959	68402449	MIP101.19819	0	.	68401959	68402449	0	1	490	0
chr11	68402828	68404436	H1_polyA+.33004	0	.	68402828	68404436	0	1	1608	0
chr11	68404525	68406849	B_cells_Cheung.56065	0	.	68404525	68406849	0	1	2324	0
chr11	68404555	68406821	H1_polyA+.33005	0	.	68404555	68406821	0	1	2266	0
chr11	68405420	68406830	REMC_LuminalBreast.30172	0	.	68405420	68406830	0	1	1410	0
chr11	68405809	68406880	REMC_MyoepithelialBreast.27930	0	.	68405809	68406880	0	1	1071	0
chr11	68406935	68407766	REMC_LuminalBreast.30173	0	.	68406935	68407766	0	1	831	0
chr11	68406951	68407711	CD4_Plagnol_activated.18511	0	.	68406951	68407711	0	1	760	0
chr11	68406951	68407727	B_cells_Cheung.56066	0	.	68406951	68407727	0	1	776	0
chr11	68406970	68407685	prostate_carcinoma.29100	0	.	68406970	68407685	0	1	715	0
chr11	68406972	68407724	H1_polyA+.33006	0	.	68406972	68407724	0	1	752	0
chr11	68406974	68407714	melanoma_Garraway_short_term_cultures.19275	0	.	68406974	68407714	0	1	740	0
chr11	68406999	68408080	REMC_MyoepithelialBreast.27931	0	.	68406999	68408080	0	1	1081	0
chr11	68409626	68410307	REMC_LuminalBreast.30175	0	.	68409626	68410307	0	1	681	0
chr11	68409636	68411424	H1_polyA+.33009	0	.	68409636	68411424	0	1	1788	0
chr11	68465875	68466863	ZR751_Thompson.7047	0	.	68465875	68466863	0	1	988	0
chr11	68465921	68467015	CD4_Plagnol_resting.17857	0	.	68465921	68467015	0	1	1094	0
chr11	68465975	68467017	REMC_BreastStem.15581	0	.	68465975	68467017	0	1	1042	0
chr11	68466260	68466976	MDAMB231_Thompson.6466	0	.	68466260	68466976	0	1	716	0
chr11	68466580	68467607	CD4_Plagnol_activated.18544	0	.	68466580	68467607	0	1	1027	0
chr11	68466676	68466982	prostate_normal.16928	0	.	68466676	68466982	0	1	306	0
chr11	68467094	68467671	B_cells_Cheung.56085	0	.	68467094	68467671	0	1	577	0
chr11	68467110	68468281	CD4_Plagnol_resting.17858	0	.	68467110	68468281	0	1	1171	0
chr11	68467116	68467598	prostate_normal.16929	0	.	68467116	68467598	0	1	482	0
chr11	68467124	68470219	H1_polyA+.33019	0	.	68467124	68470219	0	1	3095	0
chr11	68467125	68468359	HeLa_polyA+_Chen.10596	0	.	68467125	68468359	0	1	1234	0
chr11	68468793	68469195	B_cells_Cheung.56088	0	.	68468793	68469195	0	1	402	0
chr11	68470383	68470903	REMC_BreastStem.15584	0	.	68470383	68470903	0	1	520	0
chr11	68470447	68471520	ZR751_Thompson.7050	0	.	68470447	68471520	0	1	1073	0
chr11	68470449	68471513	CD4_Plagnol_resting.17860	0	.	68470449	68471513	0	1	1064	0
chr11	68470455	68471480	CD4_Plagnol_activated.18546	0	.	68470455	68471480	0	1	1025	0
chr11	68470458	68471528	B_cells_Cheung.56090	0	.	68470458	68471528	0	1	1070	0
chr11	68470461	68471381	REMC_LuminalBreast.30183	0	.	68470461	68471381	0	1	920	0
chr11	68470467	68473305	REMC_MyoepithelialBreast.27946	0	.	68470467	68473305	0	1	2838	0
chr11	68470467	68471550	HeLa_polyA+_Chen.10611	0	.	68470467	68471550	0	1	1083	0
chr11	68470473	68471507	melanoma_Garraway_short_term_cultures.19287	0	.	68470473	68471507	0	1	1034	0
chr11	68470478	68471528	BT474_Burge_Thompson.9307	0	.	68470478	68471528	0	1	1050	0
chr11	68470481	68471640	H1_polyA+.33020	0	.	68470481	68471640	0	1	1159	0
chr11	68470491	68471527	MDAMB468_Thompson.7351	0	.	68470491	68471527	0	1	1036	0
chr11	68470494	68471479	MeWo_Garraway.10253	0	.	68470494	68471479	0	1	985	0
chr11	68470703	68471711	T47D_Burge_Thompson.8234	0	.	68470703	68471711	0	1	1008	0
chr11	68471874	68473177	prostate_normal.16931	0	.	68471874	68473177	0	1	1303	0
chr11	68471925	68473040	MDAMB468_Thompson.7352	0	.	68471925	68473040	0	1	1115	0
chr11	68474268	68475931	REMC_MyoepithelialBreast.27947	0	.	68474268	68475931	0	1	1663	0
chr11	68475073	68476140	REMC_LuminalBreast.30185	0	.	68475073	68476140	0	1	1067	0
chr11	68480228	68480731	BT474_Burge_Thompson.9309	0	.	68480228	68480731	0	1	503	0
chr11	68481765	68482743	REMC_LuminalBreast.30188	0	.	68481765	68482743	0	1	978	0
chr11	68487447	68488420	CD4_Plagnol_activated.18572	0	.	68487447	68488420	0	1	973	0
chr11	68488374	68489570	REMC_MyoepithelialBreast.27951	0	.	68488374	68489570	0	1	1196	0
chr11	68488480	68488869	CD4_Plagnol_activated.18573	0	.	68488480	68488869	0	1	389	0
chr11	68489786	68491501	REMC_BreastStem.15586	0	.	68489786	68491501	0	1	1715	0
chr11	68494946	68495324	A549_Myers.22641	0	.	68494946	68495324	0	1	378	0
chr11	68494947	68495690	CD4_Plagnol_resting.17865	0	.	68494947	68495690	0	1	743	0
chr11	68500038	68500586	B_Cells_Pritchard.953365	0	.	68500038	68500586	0	1	548	0
chr11	68514514	68516048	REMC_BreastStem.15588	0	.	68514514	68516048	0	1	1534	0
chr11	68514994	68515528	B_Cells_Pritchard.953429	0	.	68514994	68515528	0	1	534	0
chr11	68516757	68517092	BT474_Burge_Thompson.9312	0	.	68516757	68517092	0	1	335	0
chr11	68521174	68522268	REMC_BreastStem.15591	0	.	68521174	68522268	0	1	1094	0
chr11	68524810	68526092	HIT000049687	0	-	68524810	68526092	0	1	1282	0
chr11	68524903	68525975	REMC_MyoepithelialBreast.27957	0	.	68524903	68525975	0	1	1072	0
chr11	68525597	68526216	brain_AmbionMAQC.12733	0	.	68525597	68526216	0	1	619	0
chr11	68525727	68526506	lymph_node_Burge.14210	0	.	68525727	68526506	0	1	779	0
chr11	68525728	68526457	testes_Burge.15367	0	.	68525728	68526457	0	1	729	0
chr11	68540168	68540752	H1_polyA+.33026	0	.	68540168	68540752	0	1	584	0
chr11	68540224	68540600	prostate_normal.16938	0	.	68540224	68540600	0	1	376	0
chr11	68540475	68542520	prostate_normal.16939	0	-	68540475	68542520	0	3	9,137,1574	0,231,471
chr11	68540712	68542520	prostate_normal.16940	0	+	68540712	68542520	0	2	1177,226	0,1582
chr11	68541267	68542510	H1_polyA+.33027	0	.	68541267	68542510	0	1	1243	0
chr11	68556815	68558019	prostate_carcinoma.29029	0	.	68556815	68558019	0	1	1204	0
chr11	68558280	68558918	prostate_carcinoma.29030	0	.	68558280	68558918	0	1	638	0
chr11	68559249	68559555	A549_Myers.22651	0	.	68559249	68559555	0	1	306	0
chr11	68561138	68565021	REMC_BreastStem.15594	0	-	68561138	68565021	0	2	391,447	0,3436
chr11	68564997	68565516	prostate_carcinoma.29033	0	.	68564997	68565516	0	1	519	0
chr11	68566784	68567134	A549_Myers.22652	0	.	68566784	68567134	0	1	350	0
chr11	68686891	68689700	B_cells_Cheung.56185	0	.	68686891	68689700	0	1	2809	0
chr11	68687787	68693422	B_Cells_Pritchard.955365	0	-	68687787	68693422	0	2	1711,452	0,5183
chr11	68690794	68702049	B_cells_Cheung.56186	0	+	68690794	68702049	0	4	158,140,256,281	0,8043,8688,10974
chr11	68691654	68692773	B_cells_Cheung.56189	0	.	68691654	68692773	0	1	1119	0
chr11	68692364	68692753	B_Cells_Pritchard.955389	0	-	68692364	68692753	0	1	389	0
chr11	68696009	68697141	B_Cells_Pritchard.953919	0	.	68696009	68697141	0	1	1132	0
chr11	68698026	68700177	B_Cells_Pritchard.953923	0	.	68698026	68700177	0	1	2151	0
chr11	68702714	68703558	B_Cells_Pritchard.953931	0	.	68702714	68703558	0	1	844	0
chr11	68703212	68703582	A549_Myers.22724	0	.	68703212	68703582	0	1	370	0
chr11	68734772	68735196	A549_Myers.22726	0	.	68734772	68735196	0	1	424	0
chr11	68736237	68737495	B_Cells_Pritchard.954039	0	.	68736237	68737495	0	1	1258	0
chr11	68752826	68757460	B_Cells_Pritchard.954105	0	.	68752826	68757460	0	1	4634	0
chr11	68752845	68756211	B_cells_Cheung.56196	0	.	68752845	68756211	0	1	3366	0
chr11	68755571	68756713	BT20_Thompson.6273	0	.	68755571	68756713	0	1	1142	0
chr11	68757704	68758174	B_Cells_Pritchard.954107	0	.	68757704	68758174	0	1	470	0
chr11	68774750	68776506	B_Cells_Pritchard.954177	0	.	68774750	68776506	0	1	1756	0
chr11	68776612	68777286	B_Cells_Pritchard.954179	0	.	68776612	68777286	0	1	674	0
chr11	68796857	68797166	A549_Myers.22731	0	.	68796857	68797166	0	1	309	0
chr11	68801519	68801860	A549_Myers.22732	0	.	68801519	68801860	0	1	341	0
chr11	68802625	68803785	ZR751_Thompson.7103	0	.	68802625	68803785	0	1	1160	0
chr11	68804054	68804903	ZR751_Thompson.7104	0	.	68804054	68804903	0	1	849	0
chr11	68809047	68809624	MDAMB468_Thompson.7380	0	.	68809047	68809624	0	1	577	0
chr11	68810226	68811263	A549_Myers.22737	0	.	68810226	68811263	0	1	1037	0
chr11	68822815	68865724	melanoma_Garraway_short_term_cultures.19308	0	+	68822815	68865724	0	3	656,92,266	0,18061,42643
chr11	68823112	68823435	MB435_Burge.12544	0	.	68823112	68823435	0	1	323	0
chr11	68827110	68837396	prostate_carcinoma.29058	0	+	68827110	68837396	0	2	585,11	0,10275
chr11	68827363	68827702	H1_polyA+.33058	0	.	68827363	68827702	0	1	339	0
chr11	68827448	68828836	pHIT000110679	0	-	68827448	68828836	0	2	153,159	0,1229
chr11	68851778	68852338	A549_Myers.22745	0	.	68851778	68852338	0	1	560	0
chr11	68858958	68859283	A549_Myers.22746	0	.	68858958	68859283	0	1	325	0
chr11	68859367	68859890	A549_Myers.22747	0	.	68859367	68859890	0	1	523	0
chr11	68866120	68869523	B_Cells_Pritchard.954549	0	.	68866120	68869523	0	1	3403	0
chr11	68866579	68866911	A549_Myers.22752	0	.	68866579	68866911	0	1	332	0
chr11	68867365	68867699	A549_Myers.22753	0	.	68867365	68867699	0	1	334	0
chr11	68867476	68868684	MDAMB231_Thompson.6529	0	.	68867476	68868684	0	1	1208	0
chr11	68877000	68877856	B_Cells_Pritchard.954587	0	.	68877000	68877856	0	1	856	0
chr11	68877234	68878022	A549_Myers.22757	0	.	68877234	68878022	0	1	788	0
chr11	68879253	68880211	B_Cells_Pritchard.954595	0	.	68879253	68880211	0	1	958	0
chr11	68879283	68880288	A549_Myers.22755	0	.	68879283	68880288	0	1	1005	0
chr11	68879300	68880193	B_cells_Cheung.56213	0	.	68879300	68880193	0	1	893	0
chr11	68880542	68880869	B_cells_Cheung.56212	0	.	68880542	68880869	0	1	327	0
chr11	68881114	68881740	B_Cells_Pritchard.954599	0	.	68881114	68881740	0	1	626	0
chr11	68881754	68882336	MDAMB231_Thompson.6531	0	.	68881754	68882336	0	1	582	0
chr11	68882909	68884645	melanoma_Garraway_short_term_cultures.19313	0	.	68882909	68884645	0	1	1736	0
chr11	68883751	68884365	B_Cells_Pritchard.954609	0	.	68883751	68884365	0	1	614	0
chr11	68890676	68896445	B_Cells_Pritchard.954629	0	+	68890676	68896445	0	2	385,5202	0,567
chr11	68890692	68894285	BT20_Thompson.6277	0	+	68890692	68894285	0	3	123,74,3042	0,295,551
chr11	68890792	68896478	melanoma_Garraway_short_term_cultures.19317	0	+	68890792	68896478	0	4	23,691,2281,1127	0,195,1225,4559
chr11	68890849	68896478	melanoma_Garraway_short_term_cultures.19318	0	.	68890849	68896478	0	1	5629	0
chr11	68891733	68892831	MeWo_Garraway.10266	0	.	68891733	68892831	0	1	1098	0
chr11	68891836	68892748	MIP101.19852	0	.	68891836	68892748	0	1	912	0
chr11	68891869	68894050	T47D_Burge_Thompson.8244	0	.	68891869	68894050	0	1	2181	0
chr11	68891872	68893561	MCF10A_Thompson.6379	0	.	68891872	68893561	0	1	1689	0
chr11	68891873	68896570	A549_Myers.22759	0	.	68891873	68896570	0	1	4697	0
chr11	68891889	68893606	REMC_LuminalBreast.30200	0	.	68891889	68893606	0	1	1717	0
chr11	68891993	68892529	breast_Burge.11887	0	.	68891993	68892529	0	1	536	0
chr11	68892022	68893350	H1_polyA+.33060	0	.	68892022	68893350	0	1	1328	0
chr11	68892029	68892514	MB435_Burge.12551	0	.	68892029	68892514	0	1	485	0
chr11	68892035	68894252	MCF7_Burge_Thompson.8801	0	.	68892035	68894252	0	1	2217	0
chr11	68892035	68892865	B_cells_Cheung.56215	0	.	68892035	68892865	0	1	830	0
chr11	68893517	68896451	B_cells_Cheung.56217	0	+	68893517	68896451	0	2	781,1100	0,1834
chr11	68893556	68896448	Rinn_00019368	0	+	68893556	68896448	0	2	742,1098	0,1794
chr11	68894382	68896451	B_cells_Cheung.56218	0	.	68894382	68896451	0	1	2069	0
chr11	68895071	68896430	T47D_Burge_Thompson.8245	0	.	68895071	68896430	0	1	1359	0
chr11	68895153	68896451	BT20_Thompson.6278	0	.	68895153	68896451	0	1	1298	0
chr11	68895470	68896413	MIP101.19853	0	.	68895470	68896413	0	1	943	0
chr11	68895680	68896462	BT474_Burge_Thompson.9340	0	.	68895680	68896462	0	1	782	0
chr11	68895834	68896438	MB435_Burge.12556	0	.	68895834	68896438	0	1	604	0
chr11	68898120	68898750	A549_Myers.22765	0	.	68898120	68898750	0	1	630	0
chr11	68900570	68901320	melanoma_Garraway_short_term_cultures.19319	0	.	68900570	68901320	0	1	750	0
chr11	68901067	68901438	A549_Myers.22767	0	.	68901067	68901438	0	1	371	0
chr11	68902275	68902651	A549_Myers.22768	0	.	68902275	68902651	0	1	376	0
chr11	68906488	68913222	K562.13537	0	.	68906488	68913222	0	1	6734	0
chr11	68906502	68909820	B_Cells_Pritchard.954675	0	.	68906502	68909820	0	1	3318	0
chr11	68906576	68911154	BT20_Thompson.6274	0	.	68906576	68911154	0	1	4578	0
chr11	68906629	68909479	MDAMB468_Thompson.7385	0	+	68906629	68909479	0	2	303,2234	0,616
chr11	68906629	68909479	MDAMB468_Thompson.7386	0	.	68906629	68909479	0	1	2850	0
chr11	68906658	68909811	B_cells_Cheung.56219	0	.	68906658	68909811	0	1	3153	0
chr11	68906660	68913223	MIP101.19854	0	.	68906660	68913223	0	1	6563	0
chr11	68907020	68908372	prostate_carcinoma.29060	0	.	68907020	68908372	0	1	1352	0
chr11	68907441	68907970	H1_polyA+.33061	0	.	68907441	68907970	0	1	529	0
chr11	68907535	68908012	A549_Myers.22772	0	.	68907535	68908012	0	1	477	0
chr11	68908225	68908609	MeI_Garraway.5210	0	.	68908225	68908609	0	1	384	0
chr11	68908571	68909487	BT474_Burge_Thompson.9342	0	.	68908571	68909487	0	1	916	0
chr11	68909019	68909804	MeI_Garraway.5211	0	.	68909019	68909804	0	1	785	0
chr11	68909213	68909876	prostate_carcinoma.29061	0	.	68909213	68909876	0	1	663	0
chr11	68909589	68910390	MDAMB468_Thompson.7383	0	.	68909589	68910390	0	1	801	0
chr11	68910789	68913356	B_Cells_Pritchard.954681	0	.	68910789	68913356	0	1	2567	0
chr11	68910795	68913217	MDAMB468_Thompson.7384	0	.	68910795	68913217	0	1	2422	0
chr11	68911257	68913366	BT20_Thompson.6275	0	.	68911257	68913366	0	1	2109	0
chr11	68912084	68912816	MeI_Garraway.5212	0	.	68912084	68912816	0	1	732	0
chr11	68917254	68917992	A549_Myers.22773	0	.	68917254	68917992	0	1	738	0
chr11	68922166	68922926	MDAMB468_Thompson.7387	0	.	68922166	68922926	0	1	760	0
chr11	68938254	68940781	Rinn_00019101	0	+	68938254	68940781	0	2	1321,1105	0,1422
chr11	68938255	68940781	HIT000016008	0	-	68938255	68940781	0	2	1320,1104	0,1422
chr11	68939759	68940264	A549_Myers.22778	0	.	68939759	68940264	0	1	505	0
chr11	68949581	68953558	MeI_Garraway.5214	0	+	68949581	68953558	0	2	174,2247	0,1730
chr11	68949637	68953570	Rinn_00019102	0	+	68949637	68953570	0	2	118,2260	0,1673
chr11	68949638	68953570	HIT000019529	0	-	68949638	68953570	0	2	117,2259	0,1673
chr11	68959887	68961434	MCF7_Burge_Thompson.8808	0	.	68959887	68961434	0	1	1547	0
chr11	68960934	68961266	A549_Myers.22783	0	.	68960934	68961266	0	1	332	0
chr11	68961584	68962205	T47D_Burge_Thompson.8247	0	.	68961584	68962205	0	1	621	0
chr11	68962504	68963013	A549_Myers.22784	0	.	68962504	68963013	0	1	509	0
chr11	68967428	68967742	A549_Myers.22786	0	.	68967428	68967742	0	1	314	0
chr11	68995032	69001655	A549_Myers.22788	0	-	68995032	69001655	0	2	64,1338	0,5285
chr11	68999304	69001655	A549_Myers.22789	0	.	68999304	69001655	0	1	2351	0
chr11	68999551	69005119	MCF7_Burge_Thompson.8812	0	-	68999551	69005119	0	2	2011,1475	0,4093
chr11	68999555	69004087	ZR751_Thompson.7109	0	-	68999555	69004087	0	2	2007,443	0,4089
chr11	68999563	69004104	BT474_Burge_Thompson.9343	0	-	68999563	69004104	0	2	1999,460	0,4081
chr11	68999578	69000733	Rinn_00020094	0	-	68999578	69000733	0	2	537,567	0,588
chr11	68999723	69001378	MIP101.19855	0	.	68999723	69001378	0	1	1655	0
chr11	69004597	69005698	A549_Myers.22791	0	.	69004597	69005698	0	2	596,412	0,689
chr11	69012105	69012940	A549_Myers.22793	0	.	69012105	69012940	0	1	835	0
chr11	69014716	69015096	kidney_Gilad.25749	0	.	69014716	69015096	0	1	380	0
chr11	69015096	69015935	A549_Myers.22794	0	.	69015096	69015935	0	2	281,330	0,509
chr11	69016034	69016580	BT474_Burge_Thompson.9344	0	.	69016034	69016580	0	1	546	0
chr11	69016042	69017156	kidney_Gilad.25751	0	.	69016042	69017156	0	1	1114	0
chr11	69019664	69020125	A549_Myers.22797	0	.	69019664	69020125	0	1	461	0
chr11	69036973	69037365	A549_Myers.22803	0	.	69036973	69037365	0	1	392	0
chr11	69048940	69049281	A549_Myers.22804	0	.	69048940	69049281	0	1	341	0
chr11	69054727	69055792	prostate_carcinoma.29063	0	.	69054727	69055792	0	1	1065	0
chr11	69061150	69061874	melanoma_Garraway_short_term_cultures.19320	0	.	69061150	69061874	0	1	724	0
chr11	69066553	69067301	A549_Myers.22806	0	.	69066553	69067301	0	1	748	0
chr11	69068169	69068567	A549_Myers.22807	0	.	69068169	69068567	0	1	398	0
chr11	69117030	69117611	B_Cells_Pritchard.955415	0	.	69117030	69117611	0	1	581	0
chr11	69161159	69161506	A549_Myers.22815	0	.	69161159	69161506	0	1	347	0
chr11	69162175	69162575	A549_Myers.22816	0	.	69162175	69162575	0	1	400	0
chr11	69204604	69204954	ZR751_Thompson.7126	0	.	69204604	69204954	0	1	350	0
chr11	69204610	69205095	BT474_Burge_Thompson.9356	0	.	69204610	69205095	0	1	485	0
chr11	69209767	69210119	A549_Myers.22826	0	.	69209767	69210119	0	1	352	0
chr11	69229492	69230689	H1_polyA+.33067	0	.	69229492	69230689	0	1	1197	0
chr11	69239867	69240567	MIP101.19860	0	.	69239867	69240567	0	1	700	0
chr11	69316512	69317160	BT474_Burge_Thompson.9358	0	.	69316512	69317160	0	1	648	0
chr11	69321139	69321836	A549_Myers.22837	0	.	69321139	69321836	0	1	697	0
chr11	69327538	69327967	ZR751_Thompson.7130	0	.	69327538	69327967	0	1	429	0
chr11	69352283	69352698	A549_Myers.22855	0	.	69352283	69352698	0	1	415	0
chr11	69388284	69388600	A549_Myers.22856	0	.	69388284	69388600	0	1	316	0
chr11	69388852	69390567	Rinn_00019371	0	+	69388852	69390567	0	2	326,23	0,1692
chr11	69391104	69391624	A549_Myers.22857	0	.	69391104	69391624	0	1	520	0
chr11	69417744	69418175	A549_Myers.22860	0	.	69417744	69418175	0	1	431	0
chr11	69434807	69435292	A549_Myers.22861	0	.	69434807	69435292	0	1	485	0
chr11	69465088	69467714	H1_polyA+.33070	0	.	69465088	69467714	0	1	2626	0
chr11	69468843	69470929	H1_polyA+.33071	0	.	69468843	69470929	0	1	2086	0
chr11	69472266	69475800	H1_polyA+.33072	0	.	69472266	69475800	0	1	3534	0
chr11	69473070	69473594	A549_Myers.22865	0	.	69473070	69473594	0	1	524	0
chr11	69476522	69477670	H1_polyA+.33073	0	.	69476522	69477670	0	1	1148	0
chr11	69479773	69487673	H1_polyA+.33075	0	+	69479773	69487673	0	2	95,494	0,7406
chr11	69480487	69481710	H1_polyA+.33076	0	.	69480487	69481710	0	1	1223	0
chr11	69490317	69545286	pHIT000110686	0	+	69490317	69545286	0	4	82,113,94,41	0,8700,19509,54928
chr11	69493733	69494483	B_Cells_Pritchard.956529	0	.	69493733	69494483	0	1	750	0
chr11	69498039	69500031	B_cells_Cheung.56225	0	.	69498039	69500031	0	1	1992	0
chr11	69498101	69499292	liver_polyA+.39661	0	.	69498101	69499292	0	1	1191	0
chr11	69498101	69499284	kidney_Gilad.25767	0	.	69498101	69499284	0	1	1183	0
chr11	69498666	69499826	ZR751_Thompson.7132	0	.	69498666	69499826	0	1	1160	0
chr11	69499348	69500002	liver_polyA+.39662	0	.	69499348	69500002	0	1	654	0
chr11	69499564	69499903	kidney_Gilad.25768	0	.	69499564	69499903	0	1	339	0
chr11	69506375	69507454	B_Cells_Pritchard.956597	0	.	69506375	69507454	0	1	1079	0
chr11	69509485	69509987	prostate_carcinoma.29121	0	.	69509485	69509987	0	1	502	0
chr11	69509503	69510410	liver_polyA+.39666	0	.	69509503	69510410	0	1	907	0
chr11	69509505	69509913	prostate_normal.16977	0	.	69509505	69509913	0	1	408	0
chr11	69509534	69509941	H1_polyA+.33080	0	.	69509534	69509941	0	1	407	0
chr11	69509629	69539569	ENST00000534086	0	+	69509629	69539569	0	2	291,141	0,29799
chr11	69510244	69512352	REMC_MyoepithelialBreast.28003	0	.	69510244	69512352	0	1	2108	0
chr11	69511376	69512394	liver_polyA+.39669	0	.	69511376	69512394	0	1	1018	0
chr11	69512446	69513730	liver_polyA+.39670	0	.	69512446	69513730	0	1	1284	0
chr11	69513358	69514972	REMC_MyoepithelialBreast.28005	0	.	69513358	69514972	0	1	1614	0
chr11	69515480	69516288	liver_polyA+.39671	0	.	69515480	69516288	0	1	808	0
chr11	69515748	69516059	IMR90_UCSD_REMC.14577	0	-	69515748	69516059	0	1	311	0
chr11	69515765	69517523	REMC_MyoepithelialBreast.28006	0	.	69515765	69517523	0	1	1758	0
chr11	69520866	69522577	REMC_MyoepithelialBreast.28010	0	.	69520866	69522577	0	1	1711	0
chr11	69523522	69526073	REMC_MyoepithelialBreast.28011	0	.	69523522	69526073	0	1	2551	0
chr11	69526347	69527960	REMC_MyoepithelialBreast.28012	0	.	69526347	69527960	0	1	1613	0
chr11	69528875	69530861	REMC_MyoepithelialBreast.28013	0	.	69528875	69530861	0	1	1986	0
chr11	69532648	69533759	REMC_MyoepithelialBreast.28015	0	.	69532648	69533759	0	1	1111	0
chr11	69534139	69537998	REMC_MyoepithelialBreast.28016	0	.	69534139	69537998	0	1	3859	0
chr11	69535960	69536407	liver_polyA+.39698	0	.	69535960	69536407	0	1	447	0
chr11	69536493	69538522	liver_polyA+.39690	0	.	69536493	69538522	0	1	2029	0
chr11	69536493	69540182	kidney_Gilad.25802	0	+	69536493	69540182	0	3	2503,86,125	0,3345,3564
chr11	69536719	69537988	REMC_BreastStem.15608	0	.	69536719	69537988	0	1	1269	0
chr11	69538062	69544765	REMC_BreastStem.15607	0	-	69538062	69544765	0	4	903,275,66,52	0,2118,6574,6651
chr11	69540025	69540736	REMC_MyoepithelialBreast.28018	0	.	69540025	69540736	0	1	711	0
chr11	69542129	69543080	liver_polyA+.39700	0	.	69542129	69543080	0	1	951	0
chr11	69542129	69546083	liver_polyA+.39701	0	-	69542129	69546083	0	2	482,3006	0,948
chr11	69542145	69542869	H1_polyA+.33081	0	.	69542145	69542869	0	1	724	0
chr11	69542293	69543179	kidney_Gilad.25795	0	-	69542293	69543179	0	2	318,102	0,784
chr11	69546263	69549455	liver_polyA+.39691	0	.	69546263	69549455	0	1	3192	0
chr11	69548595	69549561	kidney_Gilad.25808	0	.	69548595	69549561	0	1	966	0
chr11	69548595	69550834	kidney_Gilad.25809	0	-	69548595	69550834	0	3	256,107,983	0,258,1256
chr11	69549064	69549396	IMR90_UCSD_REMC.14579	0	-	69549064	69549396	0	1	332	0
chr11	69549933	69550293	IMR90_UCSD_REMC.14580	0	-	69549933	69550293	0	1	360	0
chr11	69550089	69551132	REMC_MyoepithelialBreast.28022	0	.	69550089	69551132	0	1	1043	0
chr11	69552877	69553423	liver_polyA+.39703	0	.	69552877	69553423	0	1	546	0
chr11	69552951	69553790	REMC_MyoepithelialBreast.28023	0	.	69552951	69553790	0	1	839	0
chr11	69555094	69555538	liver_polyA+.39706	0	.	69555094	69555538	0	1	444	0
chr11	69555608	69556936	liver_polyA+.39707	0	.	69555608	69556936	0	1	1328	0
chr11	69562399	69563317	liver_polyA+.39712	0	.	69562399	69563317	0	1	918	0
chr11	69564950	69567664	liver_polyA+.39715	0	.	69564950	69567664	0	1	2714	0
chr11	69565538	69567664	kidney_Gilad.25819	0	.	69565538	69567664	0	1	2126	0
chr11	69568632	69570100	REMC_MyoepithelialBreast.28027	0	.	69568632	69570100	0	1	1468	0
chr11	69569396	69570577	liver_polyA+.39721	0	.	69569396	69570577	0	1	1181	0
chr11	69569518	69570563	kidney_Gilad.25824	0	.	69569518	69570563	0	1	1045	0
chr11	69574422	69575469	liver_polyA+.39728	0	.	69574422	69575469	0	1	1047	0
chr11	69575076	69575979	REMC_MyoepithelialBreast.28034	0	.	69575076	69575979	0	1	903	0
chr11	69579970	69589125	HIT000095514	0	-	69579970	69589125	0	2	319,1449	0,7706
chr11	69579983	69589125	ENST00000511013	0	-	69579983	69589125	0	2	306,1449	0,7693
chr11	69579984	69589125	Rinn_00019173	0	-	69579984	69589125	0	2	305,1450	0,7691
chr11	69583110	69584078	liver_polyA+.39738	0	-	69583110	69584078	0	3	237,41,216	0,534,752
chr11	69587679	69590399	REMC_MyoepithelialBreast.28041	0	.	69587679	69590399	0	1	2720	0
chr11	69587680	69588044	liver_polyA+.39746	0	.	69587680	69588044	0	1	364	0
chr11	69588871	69589496	BT474_Burge_Thompson.9428	0	.	69588871	69589496	0	1	625	0
chr11	69589241	69597665	Rinn_00019372	0	+	69589241	69597665	0	2	556,1678	0,6746
chr11	69591365	69592094	liver_polyA+.39751	0	.	69591365	69592094	0	1	729	0
chr11	69591388	69591884	kidney_Gilad.25841	0	.	69591388	69591884	0	1	496	0
chr11	69592186	69592513	liver_polyA+.39752	0	.	69592186	69592513	0	1	327	0
chr11	69594404	69594997	liver_polyA+.39756	0	.	69594404	69594997	0	1	593	0
chr11	69595314	69597763	REMC_MyoepithelialBreast.28042	0	.	69595314	69597763	0	1	2449	0
chr11	69596529	69599096	HIT000395460	0	+	69596529	69599096	0	2	164,407	0,2160
chr11	69714481	69714904	A549_Myers.22886	0	.	69714481	69714904	0	1	423	0
chr11	69718380	69718891	BT474_Burge_Thompson.9422	0	.	69718380	69718891	0	1	511	0
chr11	69732349	69732870	liver_polyA+.39816	0	.	69732349	69732870	0	1	521	0
chr11	69732376	69732889	lymph_node_Burge.14254	0	.	69732376	69732889	0	1	513	0
chr11	69732473	69733974	BT474_Burge_Thompson.9425	0	.	69732473	69733974	0	1	1501	0
chr11	69755340	69755818	ZR751_Thompson.7143	0	.	69755340	69755818	0	1	478	0
chr11	69759624	69760536	MCF7_Burge_Thompson.8819	0	.	69759624	69760536	0	1	912	0
chr11	69774357	69775300	REMC_MyoepithelialBreast.27999	0	.	69774357	69775300	0	1	943	0
chr11	69792979	69793384	A549_Myers.22896	0	.	69792979	69793384	0	1	405	0
chr11	69910449	69911174	REMC_BreastStem.15698	0	.	69910449	69911174	0	1	725	0
chr11	69910576	69914991	REMC_LuminalBreast.30631	0	.	69910576	69914991	0	1	4415	0
chr11	69910678	69911790	H1_polyA+.33492	0	.	69910678	69911790	0	1	1112	0
chr11	69910678	69911793	HeLa_polyA+_Chen.10777	0	.	69910678	69911793	0	1	1115	0
chr11	69910687	69915000	REMC_MyoepithelialBreast.28118	0	.	69910687	69915000	0	1	4313	0
chr11	69911371	69913933	REMC_BreastStem.15699	0	.	69911371	69913933	0	1	2562	0
chr11	69911898	69913963	B_cells_Cheung.56386	0	.	69911898	69913963	0	1	2065	0
chr11	69911914	69913941	H1_polyA+.33493	0	.	69911914	69913941	0	1	2027	0
chr11	69911919	69913960	HeLa_polyA+_Chen.10778	0	.	69911919	69913960	0	1	2041	0
chr11	69911997	69913311	H9_polyA+.13276	0	.	69911997	69913311	0	1	1314	0
chr11	69912043	69913948	K562.13765	0	.	69912043	69913948	0	1	1905	0
chr11	69914139	69916456	H1_polyA+.33494	0	.	69914139	69916456	0	1	2317	0
chr11	69915215	69916420	HeLa_polyA+_Chen.10781	0	.	69915215	69916420	0	1	1205	0
chr11	69915716	69919954	REMC_MyoepithelialBreast.28120	0	.	69915716	69919954	0	1	4238	0
chr11	69915744	69916435	B_cells_Cheung.56389	0	.	69915744	69916435	0	1	691	0
chr11	69916536	69919960	HepG2_Caltech_ENCODE.10503	0	.	69916536	69919960	0	1	3424	0
chr11	69916661	69919950	K562.13768	0	.	69916661	69919950	0	1	3289	0
chr11	69918107	69918731	MCF7_Burge_Thompson.8882	0	.	69918107	69918731	0	1	624	0
chr11	69961371	69962273	REMC_BreastStem.15656	0	.	69961371	69962273	0	1	902	0
chr11	69961650	69962211	H1_polyA+.33095	0	.	69961650	69962211	0	1	561	0
chr11	69966951	69967678	B_Cells_Pritchard.957685	0	.	69966951	69967678	0	1	727	0
chr11	69966981	69967877	REMC_LuminalBreast.30246	0	.	69966981	69967877	0	1	896	0
chr11	69977250	69978074	REMC_LuminalBreast.30251	0	.	69977250	69978074	0	1	824	0
chr11	69980878	69981307	B_Cells_Pritchard.957749	0	.	69980878	69981307	0	1	429	0
chr11	70653804	70655127	REMC_LuminalBreast.30328	0	.	70653804	70655127	0	1	1323	0
chr11	70654422	70655090	prostate_carcinoma.29407	0	.	70654422	70655090	0	1	668	0
chr11	70672751	70673234	B_Cells_Pritchard.960215	0	.	70672751	70673234	0	1	483	0
chr11	70672771	70674227	MIP101.19928	0	.	70672771	70674227	0	1	1456	0
chr11	70672799	70674250	MCF7_Burge_Thompson.8843	0	.	70672799	70674250	0	1	1451	0
chr11	70672799	70674235	BT474_Burge_Thompson.9463	0	.	70672799	70674235	0	1	1436	0
chr11	70672804	70674219	T47D_Burge_Thompson.8334	0	.	70672804	70674219	0	1	1415	0
chr11	70672824	70674230	prostate_normal.17052	0	.	70672824	70674230	0	1	1406	0
chr11	70672855	70676514	HIT000045009	0	+	70672855	70676514	0	1	3659	0
chr11	70674519	70675222	BT474_Burge_Thompson.9464	0	.	70674519	70675222	0	1	703	0
chr11	70674522	70675229	MCF7_Burge_Thompson.8844	0	.	70674522	70675229	0	1	707	0
chr11	70674524	70675226	T47D_Burge_Thompson.8335	0	.	70674524	70675226	0	1	702	0
chr11	70674525	70676955	prostate_carcinoma.29410	0	-	70674525	70676955	0	3	727,33,1580	0,784,850
chr11	70674525	70676482	prostate_carcinoma.29409	0	+	70674525	70676482	0	2	703,1083	0,874
chr11	70675336	70676479	prostate_normal.17055	0	.	70675336	70676479	0	1	1143	0
chr11	70675344	70676377	REMC_LuminalBreast.30329	0	.	70675344	70676377	0	1	1033	0
chr11	70675372	70676459	MCF7_Burge_Thompson.8845	0	.	70675372	70676459	0	1	1087	0
chr11	70675372	70676459	BT474_Burge_Thompson.9465	0	.	70675372	70676459	0	1	1087	0
chr11	70675387	70676430	T47D_Burge_Thompson.8336	0	.	70675387	70676430	0	1	1043	0
chr11	70675403	70676469	MIP101.19930	0	.	70675403	70676469	0	1	1066	0
chr11	70675416	70676072	MDAMB468_Thompson.7415	0	.	70675416	70676072	0	1	656	0
chr11	70684096	70685009	prostate_normal.17057	0	.	70684096	70685009	0	1	913	0
chr11	70695704	70697494	prostate_carcinoma.29416	0	.	70695704	70697494	0	1	1790	0
chr11	70696504	70697504	prostate_normal.17061	0	.	70696504	70697504	0	1	1000	0
chr11	70718977	70719348	A549_Myers.23018	0	.	70718977	70719348	0	1	371	0
chr11	70732003	70732609	A549_Myers.23021	0	.	70732003	70732609	0	1	606	0
chr11	70758789	70759161	A549_Myers.23024	0	.	70758789	70759161	0	1	372	0
chr11	70775530	70776206	B_Cells_Pritchard.960541	0	.	70775530	70776206	0	1	676	0
chr11	70791323	70792044	A549_Myers.23028	0	.	70791323	70792044	0	1	721	0
chr11	70796143	70796506	A549_Myers.23029	0	.	70796143	70796506	0	1	363	0
chr11	70814225	70815738	H1_polyA+.33376	0	.	70814225	70815738	0	1	1513	0
chr11	71638139	71638806	REMC_MyoepithelialBreast.28134	0	.	71638139	71638806	0	1	667	0
chr11	71641960	71644265	REMC_LuminalBreast.30454	0	.	71641960	71644265	0	1	2305	0
chr11	71650805	71653700	REMC_MyoepithelialBreast.28141	0	.	71650805	71653700	0	1	2895	0
chr11	71650907	71653691	REMC_LuminalBreast.30458	0	.	71650907	71653691	0	1	2784	0
chr11	71651136	71651858	REMC_BreastStem.15714	0	.	71651136	71651858	0	1	722	0
chr11	71657802	71661356	REMC_LuminalBreast.30462	0	.	71657802	71661356	0	1	3554	0
chr11	71676157	71677049	K562.13670	0	.	71676157	71677049	0	1	892	0
chr11	71899079	71899528	A549_Myers.23098	0	.	71899079	71899528	0	1	449	0
chr11	71910613	71911398	HeLa_polyA+_Chen.10728	0	.	71910613	71911398	0	1	785	0
chr11	71911704	71912443	HeLa_polyA+_Chen.10729	0	.	71911704	71912443	0	1	739	0
chr11	71958808	71961246	HeLa_polyA-_Chen.5697	0	+	71958808	71961246	0	2	791,1527	0,911
chr11	71959147	71959967	MeWo_Garraway.10333	0	+	71959147	71959967	0	2	452,248	0,572
chr11	71959351	71961930	HIT000027709	0	+	71959351	71961930	0	2	248,2211	0,368
chr11	71959875	71960221	spleen_Raymond.58856	0	.	71959875	71960221	0	1	346	0
chr11	71961625	71962140	MDAMB231_Thompson.6534	0	.	71961625	71962140	0	1	515	0
chr11	72069659	72070515	A549_Myers.23147	0	.	72069659	72070515	0	1	856	0
chr11	72070014	72071219	melanoma_Garraway_short_term_cultures.19455	0	.	72070014	72071219	0	1	1205	0
chr11	72070033	72070760	prostate_normal.17125	0	.	72070033	72070760	0	1	727	0
chr11	72071019	72072554	CD4_Plagnol_activated.18711	0	.	72071019	72072554	0	1	1535	0
chr11	72071280	72072071	prostate_normal.17126	0	.	72071280	72072071	0	1	791	0
chr11	72071563	72072038	A549_Myers.23148	0	.	72071563	72072038	0	1	475	0
chr11	72071585	72072337	REMC_LuminalBreast.30512	0	.	72071585	72072337	0	1	752	0
chr11	72071646	72072124	HepG2_Caltech_ENCODE.10894	0	.	72071646	72072124	0	1	478	0
chr11	72188573	72188893	B_cells_Cheung.56610	0	.	72188573	72188893	0	1	320	0
chr11	72190789	72191575	H1_polyA+.33541	0	.	72190789	72191575	0	1	786	0
chr11	72191012	72191571	CD4_Plagnol_activated.18721	0	.	72191012	72191571	0	1	559	0
chr11	72191237	72191571	REMC_MyoepithelialBreast.28222	0	.	72191237	72191571	0	1	334	0
chr11	72192117	72194315	B_cells_Cheung.56613	0	.	72192117	72194315	0	1	2198	0
chr11	72192783	72193637	REMC_MyoepithelialBreast.28224	0	.	72192783	72193637	0	1	854	0
chr11	72192798	72194296	REMC_LuminalBreast.30526	0	.	72192798	72194296	0	1	1498	0
chr11	72193394	72194294	H1_polyA+.33542	0	.	72193394	72194294	0	1	900	0
chr11	72194410	72198413	REMC_LuminalBreast.30527	0	.	72194410	72198413	0	1	4003	0
chr11	72194434	72197604	B_cells_Cheung.56614	0	.	72194434	72197604	0	1	3170	0
chr11	72194712	72195428	H1_polyA+.33543	0	.	72194712	72195428	0	1	716	0
chr11	72194868	72195390	melanoma_Garraway_short_term_cultures.19478	0	.	72194868	72195390	0	1	522	0
chr11	72196713	72198456	REMC_MyoepithelialBreast.28227	0	.	72196713	72198456	0	1	1743	0
chr11	72196926	72197634	HeLa_polyA+_Chen.10747	0	.	72196926	72197634	0	1	708	0
chr11	72199864	72201116	B_cells_Cheung.56618	0	.	72199864	72201116	0	1	1252	0
chr11	72535997	72537311	B_cells_Cheung.56637	0	.	72535997	72537311	0	1	1314	0
chr11	72539640	72540880	B_cells_Cheung.56638	0	.	72539640	72540880	0	1	1240	0
chr11	72544419	72560805	B_Cells_Pritchard.964231	0	-	72544419	72560805	0	5	5317,2268,1196,1745,3455	0,6459,8727,10993,12931
chr11	72544419	72568207	B_Cells_Pritchard.964229	0	+	72544419	72568207	0	6	2081,7740,647,5400,3158,1997	0,2183,10261,10993,16958,21791
chr11	72545226	72545827	HepG2_Caltech_ENCODE.10616	0	.	72545226	72545827	0	1	601	0
chr11	72549904	72553070	B_cells_Cheung.56645	0	.	72549904	72553070	0	1	3166	0
chr11	72553158	72554318	B_cells_Cheung.56646	0	.	72553158	72554318	0	1	1160	0
chr11	72557343	72560814	B_cells_Cheung.56644	0	.	72557343	72560814	0	1	3471	0
chr11	72568822	72569385	B_Cells_Pritchard.964237	0	.	72568822	72569385	0	1	563	0
chr11	72573666	72574713	B_Cells_Pritchard.964245	0	.	72573666	72574713	0	1	1047	0
chr11	72573830	72574773	A549_Myers.23178	0	.	72573830	72574773	0	1	943	0
chr11	72574118	72575531	B_cells_Cheung.56658	0	.	72574118	72575531	0	1	1413	0
chr11	72574156	72575585	MDAMB231_Thompson.6545	0	+	72574156	72575585	0	2	460,452	0,977
chr11	72575053	72575576	MCF7_Burge_Thompson.8933	0	.	72575053	72575576	0	1	523	0
chr11	72575133	72575516	BT20_Thompson.6341	0	.	72575133	72575516	0	1	383	0
chr11	72575134	72575586	HeLa_polyA+_Chen.10751	0	.	72575134	72575586	0	1	452	0
chr11	72589961	72591337	BT474_Burge_Thompson.9780	0	.	72589961	72591337	0	1	1376	0
chr11	72592128	72594634	BT474_Burge_Thompson.9781	0	.	72592128	72594634	0	1	2506	0
chr11	72602153	72602568	B_Cells_Pritchard.964367	0	.	72602153	72602568	0	1	415	0
chr11	72603910	72604368	T47D_Burge_Thompson.8439	0	.	72603910	72604368	0	1	458	0
chr11	72604009	72604886	prostate_carcinoma.29606	0	.	72604009	72604886	0	1	877	0
chr11	72604421	72604906	T47D_Burge_Thompson.8440	0	.	72604421	72604906	0	1	485	0
chr11	72626199	72631340	MDAMB468_Thompson.7487	0	.	72626199	72631340	0	1	5141	0
chr11	72626199	72631940	BT474_Burge_Thompson.9786	0	.	72626199	72631940	0	1	5741	0
chr11	72626200	72630994	REMC_MyoepithelialBreast.28230	0	.	72626200	72630994	0	1	4794	0
chr11	72626204	72631327	T47D_Burge_Thompson.8443	0	.	72626204	72631327	0	1	5123	0
chr11	72626205	72631018	ZR751_Thompson.7187	0	.	72626205	72631018	0	1	4813	0
chr11	72626206	72631031	BT20_Thompson.6344	0	.	72626206	72631031	0	1	4825	0
chr11	72626213	72631449	prostate_normal.17152	0	.	72626213	72631449	0	1	5236	0
chr11	72626214	72631122	MCF10A_Thompson.6434	0	.	72626214	72631122	0	1	4908	0
chr11	72626215	72631342	MCF7_Burge_Thompson.8935	0	.	72626215	72631342	0	1	5127	0
chr11	72626217	72632475	A549_Myers.23192	0	.	72626217	72632475	0	1	6258	0
chr11	72626218	72630995	MDAMB231_Thompson.6548	0	.	72626218	72630995	0	1	4777	0
chr11	72626228	72629367	HME_Burge.12425	0	.	72626228	72629367	0	1	3139	0
chr11	72626236	72631165	prostate_carcinoma.29608	0	.	72626236	72631165	0	1	4929	0
chr11	72626250	72631027	H1_polyA+.33570	0	.	72626250	72631027	0	1	4777	0
chr11	72626255	72629762	MIP101.20051	0	.	72626255	72629762	0	1	3507	0
chr11	72626529	72627198	H9_polyA+.13441	0	.	72626529	72627198	0	1	669	0
chr11	72627667	72629910	HIT000019582	0	-	72627667	72629910	0	1	2243	0
chr11	72627702	72628502	brain_AmbionMAQC.12904	0	.	72627702	72628502	0	1	800	0
chr11	72627804	72628553	skeletal_muscle_Burge.8915	0	.	72627804	72628553	0	1	749	0
chr11	72627842	72628865	B_Cells_Pritchard.964449	0	.	72627842	72628865	0	1	1023	0
chr11	72628687	72629089	HepG2_Caltech_ENCODE.10620	0	.	72628687	72629089	0	1	402	0
chr11	72628779	72629390	liver_polyA+.40277	0	.	72628779	72629390	0	1	611	0
chr11	72629826	72630910	HepG2_Caltech_ENCODE.10621	0	.	72629826	72630910	0	1	1084	0
chr11	72629947	72630953	B_Cells_Pritchard.964455	0	.	72629947	72630953	0	1	1006	0
chr11	72630391	72631013	HME_Burge.12409	0	.	72630391	72631013	0	1	622	0
chr11	72631336	72632461	prostate_carcinoma.29612	0	.	72631336	72632461	0	1	1125	0
chr11	72633433	72634253	HME_Burge.12411	0	.	72633433	72634253	0	1	820	0
chr11	72646014	72647202	BT474_Burge_Thompson.9713	0	.	72646014	72647202	0	1	1188	0
chr11	72646102	72647794	prostate_carcinoma.29614	0	.	72646102	72647794	0	1	1692	0
chr11	72646502	72647607	prostate_normal.17157	0	.	72646502	72647607	0	1	1105	0
chr11	72646909	72647684	B_Cells_Pritchard.964515	0	.	72646909	72647684	0	1	775	0
chr11	72688952	72690061	T47D_Burge_Thompson.8455	0	.	72688952	72690061	0	1	1109	0
chr11	72688992	72689994	BT20_Thompson.6416	0	.	72688992	72689994	0	1	1002	0
chr11	72688999	72690861	REMC_LuminalBreast.30619	0	.	72688999	72690861	0	1	1862	0
chr11	72689072	72690473	MDAMB468_Thompson.7496	0	.	72689072	72690473	0	1	1401	0
chr11	72689079	72689792	B_Cells_Pritchard.964683	0	.	72689079	72689792	0	1	713	0
chr11	72689101	72689972	ZR751_Thompson.7190	0	.	72689101	72689972	0	1	871	0
chr11	72689108	72692239	MCF10A_Thompson.6430	0	.	72689108	72692239	0	1	3131	0
chr11	72689255	72690027	prostate_normal.17162	0	.	72689255	72690027	0	1	772	0
chr11	72690305	72692204	BT20_Thompson.6417	0	.	72690305	72692204	0	1	1899	0
chr11	72690609	72692213	T47D_Burge_Thompson.8457	0	.	72690609	72692213	0	1	1604	0
chr11	72690609	72692175	MDAMB468_Thompson.7497	0	.	72690609	72692175	0	1	1566	0
chr11	72690619	72692175	ZR751_Thompson.7191	0	.	72690619	72692175	0	1	1556	0
chr11	72690637	72692087	BT474_Burge_Thompson.9717	0	.	72690637	72692087	0	1	1450	0
chr11	72690685	72692097	prostate_normal.17163	0	.	72690685	72692097	0	1	1412	0
chr11	72690843	72691401	MCF7_Burge_Thompson.8941	0	.	72690843	72691401	0	1	558	0
chr11	72690970	72691318	spleen_Raymond.59328	0	.	72690970	72691318	0	1	348	0
chr11	72690971	72692248	REMC_LuminalBreast.30620	0	.	72690971	72692248	0	1	1277	0
chr11	72690975	72691519	B_Cells_Pritchard.964689	0	.	72690975	72691519	0	1	544	0
chr11	72693785	72695035	MIP101.20075	0	.	72693785	72695035	0	1	1250	0
chr11	72760028	72762146	REMC_LuminalBreast.30652	0	.	72760028	72762146	0	1	2118	0
chr11	73004731	73006144	REMC_MyoepithelialBreast.28572	0	.	73004731	73006144	0	1	1413	0
chr11	73008125	73008869	REMC_MyoepithelialBreast.28573	0	.	73008125	73008869	0	1	744	0
chr11	73008237	73009532	REMC_LuminalBreast.30662	0	.	73008237	73009532	0	1	1295	0
chr11	73008416	73009929	REMC_BreastStem.15759	0	.	73008416	73009929	0	1	1513	0
chr11	73016022	73017359	REMC_LuminalBreast.30665	0	.	73016022	73017359	0	1	1337	0
chr11	73019323	73022506	REMC_LuminalBreast.30667	0	.	73019323	73022506	0	1	3183	0
chr11	73021872	73023176	REMC_MyoepithelialBreast.28576	0	.	73021872	73023176	0	1	1304	0
chr11	73022645	73023101	REMC_LuminalBreast.30668	0	.	73022645	73023101	0	1	456	0
chr11	73026711	73027281	REMC_BreastStem.15762	0	.	73026711	73027281	0	1	570	0
chr11	73028792	73029765	REMC_MyoepithelialBreast.28579	0	.	73028792	73029765	0	1	973	0
chr11	73028912	73030861	REMC_LuminalBreast.30672	0	.	73028912	73030861	0	1	1949	0
chr11	73028991	73030077	REMC_BreastStem.15763	0	.	73028991	73030077	0	1	1086	0
chr11	73030999	73032535	REMC_BreastStem.15764	0	.	73030999	73032535	0	1	1536	0
chr11	73031432	73032505	REMC_LuminalBreast.30673	0	.	73031432	73032505	0	1	1073	0
chr11	73058846	73059291	B_cells_Cheung.56783	0	.	73058846	73059291	0	1	445	0
chr11	73059541	73060730	BT474_Burge_Thompson.9775	0	.	73059541	73060730	0	1	1189	0
chr11	73059548	73060964	H1_polyA+.33677	0	.	73059548	73060964	0	1	1416	0
chr11	73059631	73062163	REMC_LuminalBreast.30678	0	.	73059631	73062163	0	1	2532	0
chr11	73060012	73060848	CD4_Plagnol_activated.18806	0	.	73060012	73060848	0	1	836	0
chr11	73060057	73061022	melanoma_Garraway_short_term_cultures.19548	0	.	73060057	73061022	0	1	965	0
chr11	73060188	73060521	B_cells_Cheung.56785	0	.	73060188	73060521	0	1	333	0
chr11	73061406	73062244	CD4_Plagnol_resting.18071	0	.	73061406	73062244	0	1	838	0
chr11	73061483	73062146	B_Cells_Pritchard.965751	0	-	73061483	73062146	0	1	663	0
chr11	73062463	73062787	B_cells_Cheung.56788	0	.	73062463	73062787	0	1	324	0
chr11	73258768	73260045	T47D_Burge_Thompson.8500	0	.	73258768	73260045	0	1	1277	0
chr11	73259005	73260313	MDAMB468_Thompson.7517	0	.	73259005	73260313	0	1	1308	0
chr11	73259511	73260112	MCF7_Burge_Thompson.8967	0	.	73259511	73260112	0	1	601	0
chr11	73318665	73321908	H1_polyA+.33830	0	.	73318665	73321908	0	1	3243	0
chr11	73318665	73324213	H1_polyA+.33829	0	+	73318665	73324213	0	2	1888,1057	0,4491
chr11	73318718	73320667	HepG2_Caltech_ENCODE.10658	0	.	73318718	73320667	0	1	1949	0
chr11	73318864	73320319	B_cells_Cheung.56908	0	.	73318864	73320319	0	1	1455	0
chr11	73326376	73332023	H1_polyA+.33832	0	.	73326376	73332023	0	1	5647	0
chr11	73327223	73332020	HepG2_Caltech_ENCODE.10654	0	.	73327223	73332020	0	1	4797	0
chr11	73337229	73337854	B_cells_Cheung.56917	0	.	73337229	73337854	0	1	625	0
chr11	73710663	73712006	REMC_MyoepithelialBreast.28404	0	.	73710663	73712006	0	1	1343	0
chr11	73836098	73839047	MIP101.20252	0	.	73836098	73839047	0	1	2949	0
chr11	73837942	73838926	H1_polyA+.33868	0	.	73837942	73838926	0	1	984	0
chr11	73875244	73877329	prostate_carcinoma.29737	0	.	73875244	73877329	0	1	2085	0
chr11	73875771	73876991	H1_polyA+.33871	0	.	73875771	73876991	0	1	1220	0
chr11	73875774	73876437	B_Cells_Pritchard.967769	0	+	73875774	73876437	0	1	663	0
chr11	73875933	73876382	B_cells_Cheung.57021	0	.	73875933	73876382	0	1	449	0
chr11	73877551	73878577	B_Cells_Pritchard.967771	0	.	73877551	73878577	0	1	1026	0
chr11	74058152	74058572	B_Cells_Pritchard.968267	0	.	74058152	74058572	0	1	420	0
chr11	74060687	74062788	melanoma_Garraway_short_term_cultures.19657	0	.	74060687	74062788	0	1	2101	0
chr11	74061122	74062594	MIP101.20279	0	.	74061122	74062594	0	1	1472	0
chr11	74061176	74062980	H1_polyA+.33888	0	.	74061176	74062980	0	1	1804	0
chr11	74061490	74062928	REMC_LuminalBreast.30822	0	.	74061490	74062928	0	1	1438	0
chr11	74061507	74062033	B_Cells_Pritchard.968277	0	.	74061507	74062033	0	1	526	0
chr11	74065432	74065960	B_Cells_Pritchard.968293	0	.	74065432	74065960	0	1	528	0
chr11	74065627	74066675	MIP101.20258	0	.	74065627	74066675	0	1	1048	0
chr11	74081712	74083383	MIP101.20259	0	.	74081712	74083383	0	1	1671	0
chr11	74369238	74372769	HIT000262027	0	+	74369238	74372769	0	2	47,1578	0,1953
chr11	74369238	74372736	Rinn_00019151	0	+	74369238	74372736	0	2	47,1543	0,1955
chr11	74369239	74372736	ENST00000507626	0	+	74369239	74372736	0	2	46,1542	0,1955
chr11	74370302	74370870	K562.13787	0	.	74370302	74370870	0	1	568	0
chr11	74370415	74371912	CD4_Plagnol_resting.18228	0	.	74370415	74371912	0	1	1497	0
chr11	74370487	74372845	prostate_normal.17310	0	.	74370487	74372845	0	1	2358	0
chr11	74371153	74371744	H9_polyA+.13549	0	.	74371153	74371744	0	1	591	0
chr11	74371160	74372704	CD4_Plagnol_activated.18953	0	.	74371160	74372704	0	1	1544	0
chr11	74371195	74371729	CD4_Snyder.22396	0	.	74371195	74371729	0	1	534	0
chr11	74371236	74371938	HepG2_Caltech_ENCODE.10722	0	.	74371236	74371938	0	1	702	0
chr11	74372512	74373437	melanoma_Garraway_short_term_cultures.19706	0	.	74372512	74373437	0	1	925	0
chr11	75090441	75090996	liver_polyA+.40707	0	.	75090441	75090996	0	1	555	0
chr11	75090478	75091612	B_Cells_Pritchard.970925	0	.	75090478	75091612	0	1	1134	0
chr11	75090576	75090912	B_cells_Cheung.57262	0	.	75090576	75090912	0	1	336	0
chr11	75125796	75126977	HepG2_Caltech_ENCODE.10758	0	.	75125796	75126977	0	1	1181	0
chr11	75198815	75199437	B_cells_Cheung.57271	0	.	75198815	75199437	0	1	622	0
chr11	75536912	75537283	A549_Myers.23582	0	.	75536912	75537283	0	1	371	0
chr11	75540822	75541350	A549_Myers.23583	0	.	75540822	75541350	0	1	528	0
chr11	75543897	75544980	BT20_Thompson.6421	0	.	75543897	75544980	0	1	1083	0
chr11	75543909	75545140	B_Cells_Pritchard.972005	0	.	75543909	75545140	0	1	1231	0
chr11	75543943	75545124	B_cells_Cheung.57339	0	.	75543943	75545124	0	1	1181	0
chr11	75545265	75546069	BT20_Thompson.6422	0	.	75545265	75546069	0	1	804	0
chr11	75545269	75548092	B_Cells_Pritchard.972007	0	.	75545269	75548092	0	1	2823	0
chr11	75545281	75546223	MIP101.20387	0	.	75545281	75546223	0	1	942	0
chr11	75546006	75546347	B_cells_Cheung.57342	0	.	75546006	75546347	0	1	341	0
chr11	75548245	75548711	B_cells_Cheung.57345	0	.	75548245	75548711	0	1	466	0
chr11	75548750	75552640	B_Cells_Pritchard.972019	0	.	75548750	75552640	0	1	3890	0
chr11	75552161	75552524	A549_Myers.23587	0	.	75552161	75552524	0	1	363	0
chr11	75553657	75554326	B_Cells_Pritchard.972023	0	.	75553657	75554326	0	1	669	0
chr11	75557816	75558534	MIP101.20388	0	.	75557816	75558534	0	1	718	0
chr11	75558144	75558559	A549_Myers.23590	0	.	75558144	75558559	0	1	415	0
chr11	75558223	75558838	B_Cells_Pritchard.972037	0	.	75558223	75558838	0	1	615	0
chr11	75559147	75561994	B_Cells_Pritchard.972039	0	.	75559147	75561994	0	1	2847	0
chr11	75560292	75561024	MIP101.20389	0	.	75560292	75561024	0	1	732	0
chr11	75560399	75560999	B_cells_Cheung.57348	0	.	75560399	75560999	0	1	600	0
chr11	75561169	75561767	B_cells_Cheung.57349	0	.	75561169	75561767	0	1	598	0
chr11	75562233	75563440	REMC_BreastStem.15928	0	.	75562233	75563440	0	1	1207	0
chr11	75563288	75564282	prostate_carcinoma.29976	0	.	75563288	75564282	0	1	994	0
chr11	75567196	75567571	A549_Myers.23593	0	.	75567196	75567571	0	1	375	0
chr11	75569622	75571071	prostate_carcinoma.29978	0	.	75569622	75571071	0	1	1449	0
chr11	75600572	75602945	HIT000049004	0	-	75600572	75602945	0	1	2373	0
chr11	75601754	75602687	prostate_carcinoma.29986	0	.	75601754	75602687	0	1	933	0
chr11	75601822	75602550	HeLa_polyA+_Chen.10971	0	.	75601822	75602550	0	1	728	0
chr11	75601965	75602362	A549_Myers.23607	0	.	75601965	75602362	0	1	397	0
chr11	75622690	75623043	A549_Myers.23608	0	.	75622690	75623043	0	1	353	0
chr11	75624571	75625353	A549_Myers.23611	0	.	75624571	75625353	0	1	782	0
chr11	75644842	75645323	B_Cells_Pritchard.972287	0	.	75644842	75645323	0	1	481	0
chr11	75645073	75645657	BT474_Burge_Thompson.9959	0	.	75645073	75645657	0	1	584	0
chr11	75670309	75670688	BT474_Burge_Thompson.9960	0	.	75670309	75670688	0	1	379	0
chr11	75670908	75671268	A549_Myers.23612	0	.	75670908	75671268	0	1	360	0
chr11	75672623	75673158	BT474_Burge_Thompson.9961	0	.	75672623	75673158	0	1	535	0
chr11	75677134	75678207	MCF10A_Thompson.6518	0	.	75677134	75678207	0	1	1073	0
chr11	75707431	75707789	A549_Myers.23614	0	.	75707431	75707789	0	1	358	0
chr11	75731130	75731837	B_cells_Cheung.57366	0	.	75731130	75731837	0	1	707	0
chr11	75734410	75735146	B_Cells_Pritchard.972557	0	.	75734410	75735146	0	1	736	0
chr11	75803669	75805295	H1_polyA+.34044	0	.	75803669	75805295	0	1	1626	0
chr11	75812871	75813547	B_Cells_Pritchard.972747	0	.	75812871	75813547	0	1	676	0
chr11	75822417	75824100	B_cells_Cheung.57410	0	.	75822417	75824100	0	1	1683	0
chr11	75822784	75824365	H1_polyA+.34047	0	.	75822784	75824365	0	1	1581	0
chr11	75823241	75823883	prostate_carcinoma.30013	0	.	75823241	75823883	0	1	642	0
chr11	75825266	75826506	MIP101.20422	0	.	75825266	75826506	0	1	1240	0
chr11	75830061	75830365	MDAMB468_Thompson.7612	0	.	75830061	75830365	0	1	304	0
chr11	75830061	75830418	brain_AmbionMAQC.13103	0	.	75830061	75830418	0	1	357	0
chr11	75830063	75831628	HepG2_Caltech_ENCODE.10778	0	.	75830063	75831628	0	1	1565	0
chr11	75830065	75830731	BT474_Burge_Thompson.9992	0	.	75830065	75830731	0	1	666	0
chr11	75830069	75830792	HeLa_polyA+_Chen.10989	0	.	75830069	75830792	0	1	723	0
chr11	75830073	75831565	REMC_MyoepithelialBreast.28642	0	.	75830073	75831565	0	1	1492	0
chr11	75946877	75952741	REMC_LuminalBreast.31047	0	.	75946877	75952741	0	1	5864	0
chr11	75947387	75948179	melanoma_Garraway_short_term_cultures.19817	0	.	75947387	75948179	0	1	792	0
chr11	76018568	76019157	B_Cells_Pritchard.973273	0	.	76018568	76019157	0	1	589	0
chr11	76041835	76043340	liver_polyA+.40836	0	.	76041835	76043340	0	1	1505	0
chr11	76041848	76043349	REMC_MyoepithelialBreast.28651	0	.	76041848	76043349	0	1	1501	0
chr11	76042384	76042740	B_cells_Cheung.57490	0	.	76042384	76042740	0	1	356	0
chr11	76042416	76042747	breast_Burge.12242	0	.	76042416	76042747	0	1	331	0
chr11	76042466	76042781	testes_Burge.15830	0	.	76042466	76042781	0	1	315	0
chr11	76042486	76042860	adipose_Burge.11559	0	.	76042486	76042860	0	1	374	0
chr11	76043317	76043635	CD4_Plagnol_activated.19044	0	.	76043317	76043635	0	1	318	0
chr11	76044796	76045122	colon_Burge.11383	0	.	76044796	76045122	0	1	326	0
chr11	76063150	76063477	A549_Myers.23651	0	.	76063150	76063477	0	1	327	0
chr11	76064547	76065448	H1_polyA+.34076	0	.	76064547	76065448	0	1	901	0
chr11	76115632	76115991	A549_Myers.23667	0	.	76115632	76115991	0	1	359	0
chr11	76125401	76125752	A549_Myers.23669	0	.	76125401	76125752	0	1	351	0
chr11	76139331	76139835	A549_Myers.23672	0	.	76139331	76139835	0	1	504	0
chr11	76141389	76141945	prostate_normal.17444	0	.	76141389	76141945	0	1	556	0
chr11	76141417	76143432	prostate_carcinoma.30036	0	.	76141417	76143432	0	1	2015	0
chr11	76144962	76147233	prostate_carcinoma.30037	0	.	76144962	76147233	0	1	2271	0
chr11	76146739	76149233	liver_polyA+.40851	0	-	76146739	76149233	0	2	1648,610	0,1884
chr11	76146739	76157420	BT474_Burge_Thompson.10020	0	.	76146739	76157420	0	1	10681	0
chr11	76146741	76147408	HeLa_polyA+_Chen.10998	0	.	76146741	76147408	0	1	667	0
chr11	76146741	76148350	kidney_Gilad.26497	0	.	76146741	76148350	0	1	1609	0
chr11	76146752	76148809	BT20_Thompson.6436	0	.	76146752	76148809	0	1	2057	0
chr11	76146758	76150128	HepG2_Caltech_ENCODE.10782	0	.	76146758	76150128	0	1	3370	0
chr11	76146960	76149980	melanoma_Garraway_short_term_cultures.19824	0	.	76146960	76149980	0	1	3020	0
chr11	76152170	76156961	HepG2_Caltech_ENCODE.10784	0	.	76152170	76156961	0	1	4791	0
chr11	76152170	76158444	HepG2_Caltech_ENCODE.10785	0	-	76152170	76158444	0	2	4733,111	0,6163
chr11	76152601	76158001	HeLa_polyA+_Chen.10997	0	.	76152601	76158001	0	1	5400	0
chr11	76153135	76154675	liver_polyA+.40855	0	.	76153135	76154675	0	1	1540	0
chr11	76153482	76158385	BT20_Thompson.6439	0	.	76153482	76158385	0	1	4903	0
chr11	76153512	76156917	melanoma_Garraway_short_term_cultures.19825	0	-	76153512	76156917	0	2	491,116	0,3289
chr11	76153566	76157092	Rinn_00019713	0	-	76153566	76157092	0	2	363,292	0,3234
chr11	76153574	76154393	H1_polyA+.34085	0	.	76153574	76154393	0	1	819	0
chr11	76153616	76154502	MCF7_Burge_Thompson.9054	0	.	76153616	76154502	0	1	886	0
chr11	76153704	76156576	MIP101.20447	0	.	76153704	76156576	0	1	2872	0
chr11	76153719	76154669	kidney_Gilad.26498	0	.	76153719	76154669	0	1	950	0
chr11	76153813	76154692	prostate_carcinoma.30038	0	.	76153813	76154692	0	1	879	0
chr11	76154022	76155111	melanoma_Garraway_short_term_cultures.19826	0	.	76154022	76155111	0	1	1089	0
chr11	76155049	76156408	H1_polyA+.34086	0	.	76155049	76156408	0	1	1359	0
chr11	76155616	76156552	melanoma_Garraway_short_term_cultures.19827	0	.	76155616	76156552	0	1	936	0
chr11	76156641	76157834	MIP101.20448	0	.	76156641	76157834	0	1	1193	0
chr11	76157984	76158641	H1_polyA+.34087	0	.	76157984	76158641	0	1	657	0
chr11	76161603	76162192	A549_Myers.23849	0	.	76161603	76162192	0	1	589	0
chr11	76162426	76164325	H1_polyA+.34088	0	.	76162426	76164325	0	1	1899	0
chr11	76164976	76167176	BT474_Burge_Thompson.10022	0	.	76164976	76167176	0	1	2200	0
chr11	76165082	76166353	BT20_Thompson.6438	0	.	76165082	76166353	0	1	1271	0
chr11	76165307	76165886	prostate_carcinoma.30039	0	.	76165307	76165886	0	1	579	0
chr11	76167049	76168364	melanoma_Garraway_short_term_cultures.19830	0	.	76167049	76168364	0	1	1315	0
chr11	76167205	76167946	prostate_carcinoma.30041	0	.	76167205	76167946	0	1	741	0
chr11	76167293	76167753	A549_Myers.23852	0	.	76167293	76167753	0	1	460	0
chr11	76169599	76170527	BT474_Burge_Thompson.10023	0	.	76169599	76170527	0	1	928	0
chr11	76169723	76170829	MIP101.20506	0	.	76169723	76170829	0	1	1106	0
chr11	76188108	76188902	REMC_LuminalBreast.31060	0	.	76188108	76188902	0	1	794	0
chr11	76188429	76190851	T47D_Burge_Thompson.8583	0	.	76188429	76190851	0	1	2422	0
chr11	76188960	76193228	MDAMB468_Thompson.7607	0	.	76188960	76193228	0	1	4268	0
chr11	76188977	76193139	REMC_LuminalBreast.31059	0	.	76188977	76193139	0	1	4162	0
chr11	76188979	76190726	MCF10A_Thompson.6526	0	.	76188979	76190726	0	1	1747	0
chr11	76188995	76190640	K562.13911	0	.	76188995	76190640	0	1	1645	0
chr11	76189003	76213685	HIT000091252	0	+	76189003	76213685	0	3	1967,103,140	0,7623,24542
chr11	76189262	76190859	liver_polyA+.40869	0	.	76189262	76190859	0	1	1597	0
chr11	76190351	76192786	HIT000043168	0	+	76190351	76192786	0	1	2435	0
chr11	76190899	76192792	BT474_Burge_Thompson.9988	0	.	76190899	76192792	0	1	1893	0
chr11	76190951	76193156	HeLa_polyA+_Chen.11004	0	.	76190951	76193156	0	1	2205	0
chr11	76191254	76193109	MCF7_Burge_Thompson.9077	0	.	76191254	76193109	0	1	1855	0
chr11	76191594	76193242	kidney_Gilad.26510	0	.	76191594	76193242	0	1	1648	0
chr11	76191810	76192743	H9_polyA+.13621	0	.	76191810	76192743	0	1	933	0
chr11	76192155	76192859	K562.13914	0	.	76192155	76192859	0	1	704	0
chr11	76192397	76192764	testes_Burge.15840	0	.	76192397	76192764	0	1	367	0
chr11	76207418	76208505	K562.13923	0	.	76207418	76208505	0	1	1087	0
chr11	76417219	76420332	REMC_LuminalBreast.31087	0	.	76417219	76420332	0	1	3113	0
chr11	76417874	76419788	REMC_BreastStem.15968	0	.	76417874	76419788	0	1	1914	0
chr11	76417903	76418855	prostate_carcinoma.30064	0	.	76417903	76418855	0	1	952	0
chr11	76432559	76433429	REMC_BreastStem.15969	0	.	76432559	76433429	0	1	870	0
chr11	76895473	76895826	B_Cells_Pritchard.975309	0	.	76895473	76895826	0	1	353	0
chr11	77036248	77037053	B_Cells_Pritchard.975669	0	.	77036248	77037053	0	1	805	0
chr11	77036473	77037043	REMC_MyoepithelialBreast.28716	0	.	77036473	77037043	0	1	570	0
chr11	77385185	77385533	B_Cells_Pritchard.976321	0	.	77385185	77385533	0	1	348	0
chr11	77399461	77400174	prostate_carcinoma.30128	0	.	77399461	77400174	0	1	713	0
chr11	77472536	77473031	K562.13979	0	.	77472536	77473031	0	1	495	0
chr11	77473105	77475830	K562.13980	0	.	77473105	77475830	0	1	2725	0
chr11	77473757	77475624	melanoma_Garraway_short_term_cultures.19920	0	.	77473757	77475624	0	1	1867	0
chr11	77529845	77530740	BT20_Thompson.6469	0	.	77529845	77530740	0	1	895	0
chr11	77530196	77530775	MDAMB468_Thompson.7655	0	.	77530196	77530775	0	1	579	0
chr11	77536237	77537033	H1_polyA+.34294	0	.	77536237	77537033	0	1	796	0
chr11	77536437	77536934	B_cells_Cheung.57809	0	.	77536437	77536934	0	1	497	0
chr11	77536468	77537190	B_Cells_Pritchard.985857	0	+	77536468	77537190	0	1	722	0
chr11	77549642	77550685	B_cells_Cheung.57819	0	.	77549642	77550685	0	1	1043	0
chr11	77550750	77552040	B_cells_Cheung.57820	0	.	77550750	77552040	0	1	1290	0
chr11	77550813	77551151	liver_polyA+.41091	0	.	77550813	77551151	0	1	338	0
chr11	77551579	77551885	liver_polyA+.41092	0	.	77551579	77551885	0	1	306	0
chr11	77556848	77558063	liver_polyA+.41100	0	.	77556848	77558063	0	1	1215	0
chr11	77556883	77557894	BT474_Burge_Thompson.10040	0	.	77556883	77557894	0	1	1011	0
chr11	77557337	77557826	B_cells_Cheung.57824	0	.	77557337	77557826	0	1	489	0
chr11	77557448	77558051	MIP101.20556	0	.	77557448	77558051	0	1	603	0
chr11	77557501	77557988	A549_Myers.23817	0	.	77557501	77557988	0	1	487	0
chr11	77808806	77810159	REMC_MyoepithelialBreast.28886	0	.	77808806	77810159	0	1	1353	0
chr11	77808833	77810173	B_cells_Cheung.57847	0	.	77808833	77810173	0	1	1340	0
chr11	77808838	77810203	REMC_LuminalBreast.31296	0	.	77808838	77810203	0	1	1365	0
chr11	77808850	77809789	B_Cells_Pritchard.977501	0	.	77808850	77809789	0	1	939	0
chr11	77808929	77809577	MeWo_Garraway.10828	0	.	77808929	77809577	0	1	648	0
chr11	78022241	78022790	B_Cells_Pritchard.978231	0	.	78022241	78022790	0	1	549	0
chr11	79604364	79604795	B_Cells_Pritchard.981877	0	.	79604364	79604795	0	1	431	0
chr11	80134855	80151468	Rinn_00019718	0	-	80134855	80151468	0	4	112,195,96,801	0,5506,14314,15812
chr11	80134855	80140556	Rinn_00020107	0	-	80134855	80140556	0	2	112,195	0,5506
chr11	80223333	80225276	HIT000004433	0	-	80223333	80225276	0	1	1943	0
chr11	80268437	80269624	MDAMB468_Thompson.7664	0	.	80268437	80269624	0	1	1187	0
chr11	81992432	82032109	ENST00000527364	0	-	81992432	82032109	0	4	359,110,71,200	0,14778,38684,39477
chr11	82109397	82111842	pHIT000020446	0	-	82109397	82111842	0	3	345,79,77	0,1287,2368
chr11	82206334	82210125	H1_polyA+.34407	0	.	82206334	82210125	0	1	3791	0
chr11	82207148	82210060	B_Cells_Pritchard.986523	0	.	82207148	82210060	0	1	2912	0
chr11	82207234	82209705	B_cells_Cheung.57888	0	.	82207234	82209705	0	1	2471	0
chr11	82463425	82463951	CD4_Plagnol_activated.19213	0	.	82463425	82463951	0	1	526	0
chr11	82463448	82463936	MeWo_Garraway.10886	0	.	82463448	82463936	0	1	488	0
chr11	82465239	82471489	REMC_LuminalBreast.31327	0	.	82465239	82471489	0	1	6250	0
chr11	82485353	82487586	B_Cells_Pritchard.986981	0	.	82485353	82487586	0	1	2233	0
chr11	82485359	82487575	H1_polyA+.34434	0	.	82485359	82487575	0	1	2216	0
chr11	82485361	82487591	B_cells_Cheung.58093	0	.	82485361	82487591	0	1	2230	0
chr11	82489124	82489875	B_Cells_Pritchard.986989	0	.	82489124	82489875	0	1	751	0
chr11	82498324	82498852	B_cells_Cheung.58063	0	.	82498324	82498852	0	1	528	0
chr11	82542902	82543709	prostate_carcinoma.30714	0	.	82542902	82543709	0	1	807	0
chr11	82577421	82577770	liver_polyA+.41279	0	.	82577421	82577770	0	1	349	0
chr11	82578889	82580065	CD4_Plagnol_activated.19224	0	.	82578889	82580065	0	1	1176	0
chr11	82578962	82580025	K562.14128	0	.	82578962	82580025	0	1	1063	0
chr11	82578965	82580135	CD4_Plagnol_resting.18573	0	.	82578965	82580135	0	1	1170	0
chr11	82579533	82581556	NEC_from_H9.22668	0	+	82579533	82581556	0	2	117,450	0,1573
chr11	82579595	82581890	HIT000026298	0	-	82579595	82581890	0	1	2295	0
chr11	82580755	82581796	CD4_Plagnol_activated.19225	0	.	82580755	82581796	0	1	1041	0
chr11	82581435	82581834	liver_polyA+.41282	0	.	82581435	82581834	0	1	399	0
chr11	82682632	82688031	REMC_LuminalBreast.31618	0	.	82682632	82688031	0	1	5399	0
chr11	82682830	82683559	B_cells_Cheung.58129	0	.	82682830	82683559	0	1	729	0
chr11	82683172	82684406	REMC_MyoepithelialBreast.29043	0	.	82683172	82684406	0	1	1234	0
chr11	82697441	82698325	REMC_MyoepithelialBreast.29053	0	.	82697441	82698325	0	1	884	0
chr11	82697484	82703009	REMC_LuminalBreast.31622	0	.	82697484	82703009	0	1	5525	0
chr11	82697963	82698502	B_cells_Cheung.58138	0	.	82697963	82698502	0	1	539	0
chr11	82698510	82702871	REMC_MyoepithelialBreast.29054	0	.	82698510	82702871	0	1	4361	0
chr11	82699759	82700980	B_Cells_Pritchard.987415	0	.	82699759	82700980	0	1	1221	0
chr11	82721372	82727672	REMC_LuminalBreast.31410	0	.	82721372	82727672	0	1	6300	0
chr11	82721389	82724411	REMC_MyoepithelialBreast.29062	0	.	82721389	82724411	0	1	3022	0
chr11	82742080	82745809	REMC_LuminalBreast.31416	0	.	82742080	82745809	0	1	3729	0
chr11	82743030	82744527	REMC_MyoepithelialBreast.29066	0	.	82743030	82744527	0	1	1497	0
chr11	85079086	85080026	MCF7_Burge_Thompson.9170	0	.	85079086	85080026	0	1	940	0
chr11	85498163	85498835	K562.14084	0	.	85498163	85498835	0	1	672	0
chr11	85563170	85564285	HeLa_polyA-_Chen.5884	0	.	85563170	85564285	0	1	1115	0
chr11	85675505	85677332	B_cells_Cheung.58306	0	.	85675505	85677332	0	1	1827	0
chr11	85675660	85676337	CD4_Plagnol_resting.18668	0	.	85675660	85676337	0	1	677	0
chr11	85675684	85679021	REMC_LuminalBreast.31638	0	.	85675684	85679021	0	1	3337	0
chr11	85675887	85676339	skeletal_muscle_Burge.9144	0	.	85675887	85676339	0	1	452	0
chr11	85676459	85678090	REMC_BreastStem.16215	0	.	85676459	85678090	0	1	1631	0
chr11	85676462	85677284	CD4_Plagnol_activated.19300	0	.	85676462	85677284	0	1	822	0
chr11	85677386	85677842	B_cells_Cheung.58307	0	.	85677386	85677842	0	1	456	0
chr11	85677415	85678187	CD4_Plagnol_resting.18669	0	.	85677415	85678187	0	1	772	0
chr11	85678169	85681245	REMC_BreastStem.16216	0	.	85678169	85681245	0	1	3076	0
chr11	85679454	85681703	B_Cells_Pritchard.995593	0	-	85679454	85681703	0	2	294,1879	0,370
chr11	85681198	85682087	B_cells_Cheung.58312	0	.	85681198	85682087	0	1	889	0
chr11	85743621	85744890	H1_polyA+.34706	0	.	85743621	85744890	0	1	1269	0
chr11	85744005	85744682	B_cells_Cheung.58355	0	.	85744005	85744682	0	1	677	0
chr11	85749254	85750392	B_cells_Cheung.58357	0	.	85749254	85750392	0	1	1138	0
chr11	85816686	85817796	REMC_MyoepithelialBreast.29253	0	.	85816686	85817796	0	1	1110	0
chr11	86361887	86363661	prostate_carcinoma.30541	0	.	86361887	86363661	0	1	1774	0
chr11	86365853	86366567	prostate_carcinoma.30543	0	.	86365853	86366567	0	1	714	0
chr11	86366876	86369574	prostate_carcinoma.30544	0	.	86366876	86369574	0	1	2698	0
chr11	86369877	86372267	prostate_carcinoma.30545	0	.	86369877	86372267	0	1	2390	0
chr11	86370896	86372360	MIP101.21476	0	.	86370896	86372360	0	1	1464	0
chr11	86720723	86721566	REMC_MyoepithelialBreast.29275	0	.	86720723	86721566	0	1	843	0
chr11	86720779	86722628	H1_polyA+.34741	0	.	86720779	86722628	0	1	1849	0
chr11	86721035	86721612	melanoma_Garraway_short_term_cultures.20172	0	.	86721035	86721612	0	1	577	0
chr11	86721080	86721784	B_cells_Cheung.58546	0	.	86721080	86721784	0	1	704	0
chr11	86721141	86721760	B_Cells_Pritchard.996903	0	.	86721141	86721760	0	1	619	0
chr11	86741426	86741845	A549_Myers.24049	0	.	86741426	86741845	0	1	419	0
chr11	86752712	86754625	REMC_LuminalBreast.31722	0	.	86752712	86754625	0	1	1913	0
chr11	86754479	86754871	B_Cells_Pritchard.997003	0	.	86754479	86754871	0	1	392	0
chr11	86772846	86774663	B_Cells_Pritchard.997079	0	.	86772846	86774663	0	1	1817	0
chr11	86778488	86780774	REMC_LuminalBreast.31731	0	.	86778488	86780774	0	1	2286	0
chr11	86778801	86779346	B_cells_Cheung.58557	0	.	86778801	86779346	0	1	545	0
chr11	86781994	86783472	REMC_LuminalBreast.31732	0	.	86781994	86783472	0	1	1478	0
chr11	87084552	87085182	melanoma_Garraway_short_term_cultures.20178	0	.	87084552	87085182	0	1	630	0
chr11	87084589	87085349	REMC_MyoepithelialBreast.29283	0	.	87084589	87085349	0	1	760	0
chr11	87085698	87086333	B_Cells_Pritchard.997933	0	.	87085698	87086333	0	1	635	0
chr11	87085915	87086598	REMC_MyoepithelialBreast.29284	0	.	87085915	87086598	0	1	683	0
chr11	87093280	87094347	REMC_MyoepithelialBreast.29285	0	.	87093280	87094347	0	1	1067	0
chr11	87094731	87096440	REMC_MyoepithelialBreast.29286	0	.	87094731	87096440	0	1	1709	0
chr11	87099881	87100678	melanoma_Garraway_short_term_cultures.20182	0	.	87099881	87100678	0	1	797	0
chr11	87139638	87140251	melanoma_Garraway_short_term_cultures.20185	0	.	87139638	87140251	0	1	613	0
chr11	87207062	87207950	REMC_MyoepithelialBreast.29295	0	.	87207062	87207950	0	1	888	0
chr11	87207228	87208176	melanoma_Garraway_short_term_cultures.20188	0	.	87207228	87208176	0	1	948	0
chr11	87207239	87207941	MeI_Garraway.5477	0	.	87207239	87207941	0	1	702	0
chr11	87207251	87207978	MeWo_Garraway.10955	0	.	87207251	87207978	0	1	727	0
chr11	87207370	87207931	B_cells_Cheung.58676	0	.	87207370	87207931	0	1	561	0
chr11	87266872	87267873	REMC_MyoepithelialBreast.29306	0	.	87266872	87267873	0	1	1001	0
chr11	87271990	87272546	REMC_MyoepithelialBreast.29309	0	.	87271990	87272546	0	1	556	0
chr11	87310160	87313111	REMC_MyoepithelialBreast.29324	0	.	87310160	87313111	0	1	2951	0
chr11	87340715	87342780	REMC_MyoepithelialBreast.29335	0	.	87340715	87342780	0	1	2065	0
chr11	87340861	87341400	B_cells_Cheung.58706	0	.	87340861	87341400	0	1	539	0
chr11	87434576	87436590	REMC_LuminalBreast.31797	0	.	87434576	87436590	0	1	2014	0
chr11	87436218	87437315	REMC_MyoepithelialBreast.29346	0	.	87436218	87437315	0	1	1097	0
chr11	87478294	87482271	REMC_MyoepithelialBreast.29357	0	.	87478294	87482271	0	1	3977	0
chr11	87478853	87480654	B_cells_Cheung.58722	0	.	87478853	87480654	0	1	1801	0
chr11	87478881	87482260	H1_polyA+.34754	0	.	87478881	87482260	0	1	3379	0
chr11	87483157	87484233	MeWo_Garraway.10960	0	.	87483157	87484233	0	1	1076	0
chr11	87483545	87484186	H9_polyA+.13844	0	.	87483545	87484186	0	1	641	0
chr11	87584787	87585401	B_Cells_Pritchard.999299	0	.	87584787	87585401	0	1	614	0
chr11	87598053	87599234	B_cells_Cheung.59059	0	.	87598053	87599234	0	1	1181	0
chr11	87599349	87605845	B_cells_Cheung.59060	0	.	87599349	87605845	0	1	6496	0
chr11	87628499	87629100	B_cells_Cheung.59064	0	.	87628499	87629100	0	1	601	0
chr11	87630026	87635451	REMC_LuminalBreast.31742	0	.	87630026	87635451	0	1	5425	0
chr11	87631201	87636712	B_cells_Cheung.59067	0	.	87631201	87636712	0	1	5511	0
chr11	87631713	87635106	REMC_MyoepithelialBreast.29378	0	.	87631713	87635106	0	1	3393	0
chr11	87638770	87641336	B_cells_Cheung.59069	0	.	87638770	87641336	0	3	1089,601,252	0,1161,2314
chr11	87663788	87664098	K562.14154	0	.	87663788	87664098	0	1	310	0
chr11	87726086	87733842	B_Cells_Pritchard.999681	0	-	87726086	87733842	0	5	3014,145,1346,555,488	0,3570,3771,5182,7268
chr11	87750457	87752403	B_cells_Cheung.59110	0	.	87750457	87752403	0	1	1946	0
chr11	87750517	87752395	B_Cells_Pritchard.999605	0	.	87750517	87752395	0	1	1878	0
chr11	87753026	87754474	B_Cells_Pritchard.999609	0	.	87753026	87754474	0	1	1448	0
chr11	87753096	87755429	B_cells_Cheung.59112	0	.	87753096	87755429	0	1	2333	0
chr11	87759398	87761725	B_cells_Cheung.59116	0	.	87759398	87761725	0	1	2327	0
chr11	87762695	87763284	B_cells_Cheung.59118	0	.	87762695	87763284	0	1	589	0
chr11	87772410	87773161	K562.14168	0	.	87772410	87773161	0	1	751	0
chr11	87772499	87773215	B_Cells_Pritchard.1000235	0	-	87772499	87773215	0	1	716	0
chr11	87785453	87789159	B_Cells_Pritchard.1000331	0	-	87785453	87789159	0	1	3706	0
chr11	87786915	87789169	B_cells_Cheung.58730	0	.	87786915	87789169	0	1	2254	0
chr11	87798030	87801135	melanoma_Garraway_short_term_cultures.20235	0	.	87798030	87801135	0	1	3105	0
chr11	89613720	89614378	K562.14191	0	.	89613720	89614378	0	1	658	0
chr11	89614592	89619402	H1_polyA+.34834	0	.	89614592	89619402	0	1	4810	0
chr11	89615494	89616706	K562.14193	0	.	89615494	89616706	0	1	1212	0
chr11	89930012	89931937	B_cells_Cheung.58820	0	.	89930012	89931937	0	1	1925	0
chr11	89932009	89937032	B_Cells_Pritchard.1002265	0	-	89932009	89937032	0	2	1066,497	0,4526
chr11	89932010	89932338	liver_polyA+.41658	0	.	89932010	89932338	0	1	328	0
chr11	89932018	89932414	B_cells_Cheung.58821	0	.	89932018	89932414	0	1	396	0
chr11	89995748	89996319	B_Cells_Pritchard.1002535	0	.	89995748	89996319	0	1	571	0
chr11	89995939	89996423	B_cells_Cheung.58842	0	.	89995939	89996423	0	1	484	0
chr11	90132815	90133351	B_cells_Cheung.58854	0	.	90132815	90133351	0	1	536	0
chr11	90140301	90140738	B_Cells_Pritchard.1003027	0	.	90140301	90140738	0	1	437	0
chr11	90140319	90140653	liver_polyA+.41660	0	.	90140319	90140653	0	1	334	0
chr11	90177393	90178129	B_cells_Cheung.58858	0	.	90177393	90178129	0	1	736	0
chr11	90238546	90238988	B_Cells_Pritchard.1003359	0	.	90238546	90238988	0	1	442	0
chr11	90301727	90302408	B_Cells_Pritchard.1003597	0	.	90301727	90302408	0	1	681	0
chr11	90303216	90303776	B_cells_Cheung.58877	0	.	90303216	90303776	0	1	560	0
chr11	91212509	91229330	Rinn_00019971	0	+	91212509	91229330	0	5	9,103,78,91,182	0,1888,2995,16272,16639
chr11	91353199	91354199	REMC_MyoepithelialBreast.29409	0	.	91353199	91354199	0	1	1000	0
chr11	91597141	91597766	A549_Myers.24100	0	.	91597141	91597766	0	1	625	0
chr11	91597478	91597823	H1_rRNA-depleted_UCSD_REMC.26837	0	.	91597478	91597823	0	1	345	0
chr11	91597483	91598224	A549_Myers.24101	0	-	91597483	91598224	0	2	9,433	0,308
chr11	92317571	92318371	H1_polyA+.34947	0	.	92317571	92318371	0	1	800	0
chr11	92318953	92319463	H1_polyA+.34948	0	.	92318953	92319463	0	1	510	0
chr11	92319014	92319777	REMC_MyoepithelialBreast.29419	0	.	92319014	92319777	0	1	763	0
chr11	92321192	92322006	H1_polyA+.34949	0	.	92321192	92322006	0	1	814	0
chr11	92323369	92324643	REMC_MyoepithelialBreast.29422	0	.	92323369	92324643	0	1	1274	0
chr11	92324702	92327181	REMC_MyoepithelialBreast.29423	0	.	92324702	92327181	0	1	2479	0
chr11	92358962	92360140	REMC_MyoepithelialBreast.29437	0	.	92358962	92360140	0	1	1178	0
chr11	92359191	92359645	H1_polyA+.34960	0	.	92359191	92359645	0	1	454	0
chr11	92396238	92396943	REMC_MyoepithelialBreast.29441	0	.	92396238	92396943	0	1	705	0
chr11	92437187	92438013	REMC_MyoepithelialBreast.29446	0	.	92437187	92438013	0	1	826	0
chr11	92459083	92460322	REMC_BreastStem.16294	0	.	92459083	92460322	0	1	1239	0
chr11	92459554	92460395	REMC_LuminalBreast.31813	0	.	92459554	92460395	0	1	841	0
chr11	92471531	92475756	REMC_MyoepithelialBreast.29545	0	.	92471531	92475756	0	1	4225	0
chr11	92473311	92475211	REMC_LuminalBreast.31819	0	.	92473311	92475211	0	1	1900	0
chr11	92473622	92474547	H1_polyA+.34979	0	.	92473622	92474547	0	1	925	0
chr11	92483533	92484161	REMC_LuminalBreast.31820	0	.	92483533	92484161	0	1	628	0
chr11	92483957	92484666	REMC_MyoepithelialBreast.29553	0	.	92483957	92484666	0	1	709	0
chr11	92485409	92487447	REMC_LuminalBreast.31821	0	.	92485409	92487447	0	1	2038	0
chr11	92487992	92488594	REMC_MyoepithelialBreast.29555	0	.	92487992	92488594	0	1	602	0
chr11	92504024	92509500	REMC_BreastStem.16310	0	.	92504024	92509500	0	1	5476	0
chr11	92505570	92508959	REMC_MyoepithelialBreast.29560	0	.	92505570	92508959	0	1	3389	0
chr11	92595743	92596918	H1_polyA+.34984	0	.	92595743	92596918	0	1	1175	0
chr11	92599073	92600667	B_cells_Cheung.58899	0	.	92599073	92600667	0	1	1594	0
chr11	92605141	92605925	B_Cells_Pritchard.1007501	0	.	92605141	92605925	0	1	784	0
chr11	92620479	92621909	H1_polyA+.34989	0	.	92620479	92621909	0	1	1430	0
chr11	92621103	92621513	B_cells_Cheung.58916	0	.	92621103	92621513	0	1	410	0
chr11	92651852	92652486	B_Cells_Pritchard.1007667	0	.	92651852	92652486	0	1	634	0
chr11	92651879	92653825	H1_polyA+.34993	0	.	92651879	92653825	0	1	1946	0
chr11	92657794	92658643	prostate_carcinoma.30682	0	.	92657794	92658643	0	1	849	0
chr11	92657819	92659318	H1_polyA+.34997	0	.	92657819	92659318	0	1	1499	0
chr11	92657990	92658564	B_cells_Cheung.58930	0	.	92657990	92658564	0	1	574	0
chr11	92658025	92658785	B_Cells_Pritchard.1007693	0	.	92658025	92658785	0	1	760	0
chr11	92667813	92668137	B_cells_Cheung.58936	0	.	92667813	92668137	0	1	324	0
chr11	92675780	92678312	B_cells_Cheung.58941	0	.	92675780	92678312	0	1	2532	0
chr11	92676282	92677040	B_Cells_Pritchard.1007785	0	-	92676282	92677040	0	1	758	0
chr11	92676725	92678339	H1_polyA+.35005	0	.	92676725	92678339	0	1	1614	0
chr11	92685715	92686866	H1_polyA+.35006	0	.	92685715	92686866	0	1	1151	0
chr11	92685716	92686852	B_Cells_Pritchard.1007795	0	.	92685716	92686852	0	1	1136	0
chr11	92686009	92686495	prostate_carcinoma.30685	0	.	92686009	92686495	0	1	486	0
chr11	92689484	92690989	H1_polyA+.35008	0	.	92689484	92690989	0	1	1505	0
chr11	93493841	93494154	H1_polyA+.35115	0	.	93493841	93494154	0	1	313	0
chr11	93496606	93496910	H1_rRNA-depleted_UCSD_REMC.26998	0	.	93496606	93496910	0	1	304	0
chr11	93577506	93579992	REMC_LuminalBreast.31870	0	.	93577506	93579992	0	1	2486	0
chr11	93578107	93579077	MIP101.21003	0	.	93578107	93579077	0	1	970	0
chr11	93583973	93586242	REMC_LuminalBreast.31873	0	.	93583973	93586242	0	1	2269	0
chr11	93584068	93585121	MIP101.21004	0	.	93584068	93585121	0	1	1053	0
chr11	93589047	93604971	MIP101.21006	0	-	93589047	93604971	0	2	262,982	0,14942
chr11	93593366	93594293	REMC_LuminalBreast.31876	0	.	93593366	93594293	0	1	927	0
chr11	93599359	93601141	REMC_LuminalBreast.31878	0	.	93599359	93601141	0	1	1782	0
chr11	93631709	93632584	MIP101.21020	0	.	93631709	93632584	0	1	875	0
chr11	93639729	93642098	REMC_MyoepithelialBreast.29647	0	.	93639729	93642098	0	1	2369	0
chr11	93640257	93641408	REMC_LuminalBreast.31886	0	.	93640257	93641408	0	1	1151	0
chr11	93640769	93641838	REMC_BreastStem.16379	0	.	93640769	93641838	0	1	1069	0
chr11	93648714	93651208	MIP101.21032	0	.	93648714	93651208	0	1	2494	0
chr11	93649780	93655071	H1_polyA+.35128	0	+	93649780	93655071	0	2	143,3493	0,1798
chr11	93649876	93654713	H9_polyA+.13941	0	+	93649876	93654713	0	2	47,3135	0,1702
chr11	93651451	93656995	MIP101.21007	0	.	93651451	93656995	0	1	5544	0
chr11	93652666	93653782	melanoma_Garraway_short_term_cultures.20422	0	.	93652666	93653782	0	1	1116	0
chr11	93652963	93654354	HepG2_Caltech_ENCODE.11052	0	.	93652963	93654354	0	1	1391	0
chr11	93655268	93656776	REMC_MyoepithelialBreast.29572	0	.	93655268	93656776	0	1	1508	0
chr11	93665301	93666523	REMC_MyoepithelialBreast.29575	0	.	93665301	93666523	0	1	1222	0
chr11	93665522	93666477	MIP101.21037	0	.	93665522	93666477	0	1	955	0
chr11	93670910	93672102	MIP101.21040	0	.	93670910	93672102	0	1	1192	0
chr11	93670930	93672114	REMC_BreastStem.16319	0	.	93670930	93672114	0	1	1184	0
chr11	93673705	93674482	MIP101.21042	0	.	93673705	93674482	0	1	777	0
chr11	93682075	93683857	MIP101.21051	0	.	93682075	93683857	0	1	1782	0
chr11	94009571	94030793	H9_polyA+.13988	0	+	94009571	94030793	0	7	45,58,294,92,129,64,6709	0,5294,10527,11259,11502,13716,14513
chr11	94015121	94015615	H1_polyA+.35208	0	.	94015121	94015615	0	1	494	0
chr11	94016533	94045909	H1_polyA+.35205	0	-	94016533	94045909	0	4	18,169,12740,638	0,1746,7723,28738
chr11	94020153	94030386	K562.14242	0	+	94020153	94030386	0	3	239,287,7099	0,762,3134
chr11	94022695	94036996	H1_polyA+.35207	0	+	94022695	94036996	0	2	656,12706	0,1595
chr11	94022717	94036996	H1_polyA+.35206	0	.	94022717	94036996	0	1	14279	0
chr11	94022809	94030271	H9_polyA+.13989	0	.	94022809	94030271	0	1	7462	0
chr11	94023169	94023496	H1_rRNA-depleted_UCSD_REMC.27050	0	.	94023169	94023496	0	1	327	0
chr11	94023185	94029651	H9_polyA-_Chen.4375	0	.	94023185	94029651	0	1	6466	0
chr11	94023185	94029651	H9_polyA-_Chen.4374	0	+	94023185	94029651	0	2	166,5361	0,1105
chr11	94023315	94025425	REMC_LuminalBreast.31914	0	+	94023315	94025425	0	2	36,1135	0,975
chr11	94025259	94025768	NEC_from_H9.22986	0	.	94025259	94025768	0	1	509	0
chr11	94027697	94028018	NEC_from_H9.22992	0	.	94027697	94028018	0	1	321	0
chr11	94027847	94028334	H1_rRNA-depleted_UCSD_REMC.27053	0	.	94027847	94028334	0	1	487	0
chr11	94031326	94032414	H9_polyA+.13990	0	.	94031326	94032414	0	1	1088	0
chr11	94039764	94040896	H9_polyA+.13978	0	.	94039764	94040896	0	1	1132	0
chr11	94042248	94042880	H9_polyA+.13981	0	.	94042248	94042880	0	1	632	0
chr11	94044219	94045179	H9_polyA+.13983	0	.	94044219	94045179	0	1	960	0
chr11	94045253	94045847	H9_polyA+.13984	0	.	94045253	94045847	0	1	594	0
chr11	94047923	94051324	H1_polyA+.35212	0	.	94047923	94051324	0	2	2236,886	0,2515
chr11	94051535	94052835	H1_polyA+.35213	0	.	94051535	94052835	0	1	1300	0
chr11	94065641	94067507	H1_polyA+.35222	0	.	94065641	94067507	0	1	1866	0
chr11	94071840	94078747	H1_polyA+.35224	0	.	94071840	94078747	0	1	6907	0
chr11	94112976	94113812	prostate_carcinoma.30786	0	.	94112976	94113812	0	1	836	0
chr11	94113089	94113797	A549_Myers.24194	0	.	94113089	94113797	0	1	708	0
chr11	94113212	94113765	BT474_Burge_Thompson.10225	0	.	94113212	94113765	0	1	553	0
chr11	94113271	94113804	B_Cells_Pritchard.1011209	0	.	94113271	94113804	0	1	533	0
chr11	94113277	94113805	MDAMB468_Thompson.7798	0	.	94113277	94113805	0	1	528	0
chr11	94113300	94113775	testes_Burge.16150	0	.	94113300	94113775	0	1	475	0
chr11	94113568	94113887	NEC_from_H9.22994	0	.	94113568	94113887	0	1	319	0
chr11	94113900	94114502	A549_Myers.24193	0	.	94113900	94114502	0	1	602	0
chr11	94113908	94114630	prostate_carcinoma.30787	0	.	94113908	94114630	0	1	722	0
chr11	94251548	94252473	melanoma_Garraway_short_term_cultures.20467	0	.	94251548	94252473	0	1	925	0
chr11	94251767	94252316	B_Cells_Pritchard.1011471	0	.	94251767	94252316	0	1	549	0
chr11	94251791	94252969	H1_polyA+.35170	0	.	94251791	94252969	0	1	1178	0
chr11	94255117	94263879	REMC_MyoepithelialBreast.29991	0	.	94255117	94263879	0	1	8762	0
chr11	94259217	94259766	B_Cells_Pritchard.1011507	0	.	94259217	94259766	0	1	549	0
chr11	94265741	94267170	REMC_MyoepithelialBreast.29993	0	.	94265741	94267170	0	1	1429	0
chr11	94266437	94267647	MeI_Garraway.5532	0	.	94266437	94267647	0	1	1210	0
chr11	94266439	94267419	B_Cells_Pritchard.1011535	0	.	94266439	94267419	0	1	980	0
chr11	94267355	94281537	REMC_MyoepithelialBreast.29994	0	.	94267355	94281537	0	1	14182	0
chr11	94276227	94279934	REMC_BreastStem.16411	0	.	94276227	94279934	0	1	3707	0
chr11	94285955	94286351	pHIT000110891	0	+	94285955	94286351	0	2	115,215	0,181
chr11	94285955	94286351	pHIT000020510	0	+	94285955	94286351	0	2	115,233	0,163
chr11	94294347	94297072	REMC_MyoepithelialBreast.30002	0	.	94294347	94297072	0	1	2725	0
chr11	94297247	94299889	REMC_MyoepithelialBreast.30003	0	.	94297247	94299889	0	1	2642	0
chr11	94300036	94302850	REMC_MyoepithelialBreast.30004	0	.	94300036	94302850	0	1	2814	0
chr11	94302960	94305792	REMC_MyoepithelialBreast.30005	0	.	94302960	94305792	0	1	2832	0
chr11	94305942	94310561	REMC_MyoepithelialBreast.30006	0	.	94305942	94310561	0	1	4619	0
chr11	94325322	94327006	REMC_MyoepithelialBreast.30011	0	.	94325322	94327006	0	1	1684	0
chr11	94327731	94329159	REMC_MyoepithelialBreast.30012	0	.	94327731	94329159	0	1	1428	0
chr11	94330615	94331750	REMC_LuminalBreast.31982	0	.	94330615	94331750	0	1	1135	0
chr11	94330638	94331753	REMC_BreastStem.16350	0	.	94330638	94331753	0	1	1115	0
chr11	94330738	94331863	B_cells_Cheung.59238	0	.	94330738	94331863	0	1	1125	0
chr11	94331878	94333093	REMC_LuminalBreast.31983	0	.	94331878	94333093	0	1	1215	0
chr11	94386987	94387639	prostate_carcinoma.30820	0	.	94386987	94387639	0	1	652	0
chr11	94446690	94447941	REMC_MyoepithelialBreast.29656	0	.	94446690	94447941	0	1	1251	0
chr11	94507346	94523121	pHIT000085244	0	-	94507346	94523121	0	3	88,129,110	0,6318,15665
chr11	94511921	94514881	REMC_MyoepithelialBreast.29670	0	.	94511921	94514881	0	1	2960	0
chr11	94513167	94514729	REMC_LuminalBreast.31993	0	.	94513167	94514729	0	1	1562	0
chr11	94513232	94523121	pHIT000020514	0	-	94513232	94523121	0	3	62,129,110	0,432,9779
chr11	94514686	94520706	prostate_carcinoma.30840	0	.	94514686	94520706	0	1	6020	0
chr11	94515150	94517270	REMC_MyoepithelialBreast.29671	0	.	94515150	94517270	0	1	2120	0
chr11	94515833	94517110	REMC_LuminalBreast.31994	0	.	94515833	94517110	0	1	1277	0
chr11	94516042	94517505	brain_AmbionMAQC.13478	0	.	94516042	94517505	0	1	1463	0
chr11	94517984	94520594	melanoma_Garraway_short_term_cultures.20481	0	.	94517984	94520594	0	1	2610	0
chr11	94520051	94521143	REMC_LuminalBreast.31996	0	.	94520051	94521143	0	1	1092	0
chr11	94521771	94525149	B_Cells_Pritchard.1012545	0	-	94521771	94525149	0	3	308,998,1481	0,885,1897
chr11	94522652	94525125	B_cells_Cheung.59295	0	-	94522652	94525125	0	2	851,1012	0,1461
chr11	94522924	94525118	prostate_carcinoma.30842	0	.	94522924	94525118	0	1	2194	0
chr11	94523815	94524404	CD4_Snyder.23030	0	.	94523815	94524404	0	1	589	0
chr11	94523970	94524417	A549_Myers.24219	0	.	94523970	94524417	0	1	447	0
chr11	94525253	94526509	REMC_MyoepithelialBreast.29675	0	.	94525253	94526509	0	1	1256	0
chr11	94525337	94526693	REMC_LuminalBreast.31998	0	.	94525337	94526693	0	1	1356	0
chr11	94525358	94526015	B_cells_Cheung.59297	0	.	94525358	94526015	0	1	657	0
chr11	94525413	94526357	B_Cells_Pritchard.1012551	0	.	94525413	94526357	0	1	944	0
chr11	94525418	94528580	prostate_carcinoma.30843	0	.	94525418	94528580	0	1	3162	0
chr11	94537548	94538001	CD4_Snyder.23035	0	.	94537548	94538001	0	1	453	0
chr11	94683431	94683937	H1_polyA+.35203	0	.	94683431	94683937	0	1	506	0
chr11	95073503	95073851	melanoma_Garraway_short_term_cultures.20486	0	.	95073503	95073851	0	1	348	0
chr11	95304896	95306250	REMC_MyoepithelialBreast.29717	0	.	95304896	95306250	0	1	1354	0
chr11	95305137	95307264	REMC_LuminalBreast.32017	0	.	95305137	95307264	0	1	2127	0
chr11	95307949	95309057	REMC_MyoepithelialBreast.29718	0	.	95307949	95309057	0	1	1108	0
chr11	95308309	95310167	REMC_LuminalBreast.32018	0	.	95308309	95310167	0	1	1858	0
chr11	95873071	95874171	K562.14307	0	.	95873071	95874171	0	1	1100	0
chr11	95874882	95877660	K562.14309	0	.	95874882	95877660	0	1	2778	0
chr11	95877753	95879885	K562.14304	0	.	95877753	95879885	0	1	2132	0
chr11	97829301	97830029	H1_polyA+.35288	0	.	97829301	97830029	0	1	728	0
chr11	100595170	100595758	BT474_Burge_Thompson.10287	0	.	100595170	100595758	0	1	588	0
chr11	100600554	100601182	BT474_Burge_Thompson.10289	0	.	100600554	100601182	0	1	628	0
chr11	100639950	100640752	prostate_carcinoma.30996	0	.	100639950	100640752	0	1	802	0
chr11	100721617	100722011	BT474_Burge_Thompson.10295	0	.	100721617	100722011	0	1	394	0
chr11	100788891	100790688	REMC_MyoepithelialBreast.29898	0	.	100788891	100790688	0	1	1797	0
chr11	100795766	100798170	REMC_MyoepithelialBreast.29903	0	.	100795766	100798170	0	1	2404	0
chr11	100799210	100799862	BT474_Burge_Thompson.10297	0	.	100799210	100799862	0	1	652	0
chr11	100823486	100824465	prostate_carcinoma.30999	0	.	100823486	100824465	0	1	979	0
chr11	101616084	101617615	H1_polyA+.35442	0	.	101616084	101617615	0	1	1531	0
chr11	101616339	101617688	REMC_BreastStem.16456	0	.	101616339	101617688	0	1	1349	0
chr11	101621750	101623542	REMC_MyoepithelialBreast.30710	0	.	101621750	101623542	0	1	1792	0
chr11	101621941	101622591	melanoma_Garraway_short_term_cultures.20663	0	.	101621941	101622591	0	1	650	0
chr11	101625374	101636440	REMC_MyoepithelialBreast.30712	0	.	101625374	101636440	0	1	11066	0
chr11	101626626	101632005	REMC_LuminalBreast.32203	0	.	101626626	101632005	0	1	5379	0
chr11	101634780	101637991	REMC_LuminalBreast.32206	0	.	101634780	101637991	0	1	3211	0
chr11	101636766	101638981	REMC_MyoepithelialBreast.30713	0	.	101636766	101638981	0	1	2215	0
chr11	101638113	101640111	REMC_LuminalBreast.32207	0	.	101638113	101640111	0	1	1998	0
chr11	101651203	101653299	REMC_MyoepithelialBreast.30720	0	.	101651203	101653299	0	1	2096	0
chr11	101651699	101653201	REMC_LuminalBreast.32210	0	.	101651699	101653201	0	1	1502	0
chr11	101657044	101660730	REMC_MyoepithelialBreast.30721	0	.	101657044	101660730	0	1	3686	0
chr11	101661704	101662770	REMC_MyoepithelialBreast.30722	0	.	101661704	101662770	0	1	1066	0
chr11	101661731	101662523	BT474_Burge_Thompson.10531	0	.	101661731	101662523	0	1	792	0
chr11	101661943	101662843	REMC_LuminalBreast.32214	0	.	101661943	101662843	0	1	900	0
chr11	101664445	101665664	REMC_LuminalBreast.32215	0	.	101664445	101665664	0	1	1219	0
chr11	101665795	101668118	REMC_MyoepithelialBreast.30724	0	.	101665795	101668118	0	1	2323	0
chr11	101666774	101667866	REMC_LuminalBreast.32216	0	.	101666774	101667866	0	1	1092	0
chr11	101680529	101682228	REMC_LuminalBreast.32220	0	.	101680529	101682228	0	1	1699	0
chr11	101680717	101682307	REMC_MyoepithelialBreast.30727	0	.	101680717	101682307	0	1	1590	0
chr11	101757474	101758593	B_cells_Cheung.59535	0	.	101757474	101758593	0	1	1119	0
chr11	101757487	101758660	CD4_Snyder.23383	0	.	101757487	101758660	0	1	1173	0
chr11	101759929	101761089	B_cells_Cheung.59537	0	.	101759929	101761089	0	1	1160	0
chr11	101760237	101761161	H1_polyA+.35447	0	.	101760237	101761161	0	1	924	0
chr11	101761263	101771169	REMC_MyoepithelialBreast.30730	0	.	101761263	101771169	0	1	9906	0
chr11	101766240	101768362	B_cells_Cheung.59544	0	.	101766240	101768362	0	1	2122	0
chr11	101766279	101768286	B_Cells_Pritchard.1026341	0	.	101766279	101768286	0	1	2007	0
chr11	101766298	101768209	H1_polyA+.35451	0	.	101766298	101768209	0	1	1911	0
chr11	101766849	101767573	CD4_Plagnol_resting.18923	0	.	101766849	101767573	0	1	724	0
chr11	101767018	101767935	CD4_Snyder.23389	0	.	101767018	101767935	0	1	917	0
chr11	101767057	101768192	melanoma_Garraway_short_term_cultures.20680	0	.	101767057	101768192	0	1	1135	0
chr11	101767072	101768196	CD4_Plagnol_activated.19809	0	.	101767072	101768196	0	1	1124	0
chr11	102469331	102469679	B_Cells_Pritchard.1028703	0	+	102469331	102469679	0	1	348	0
chr11	102969548	102970669	B_Cells_Pritchard.1029067	0	.	102969548	102970669	0	1	1121	0
chr11	102969748	102970611	B_cells_Cheung.59650	0	.	102969748	102970611	0	1	863	0
chr11	102970891	103002338	B_cells_Cheung.59651	0	-	102970891	103002338	0	6	572,263,111,118,29,155	0,757,16198,31086,31204,31292
chr11	103207209	103207870	BT474_Burge_Thompson.10369	0	.	103207209	103207870	0	1	661	0
chr11	103995047	104070560	REMC_BreastStem.16536	0	-	103995047	104070560	0	4	108,9,265,182	0,22334,45383,75331
chr11	104566464	104566985	B_Cells_Pritchard.1032049	0	.	104566464	104566985	0	1	521	0
chr11	104694205	104695373	K562.14466	0	.	104694205	104695373	0	1	1168	0
chr11	104819009	104819943	K562.14479	0	.	104819009	104819943	0	1	934	0
chr11	105767395	105768251	T47D_Burge_Thompson.8970	0	.	105767395	105768251	0	1	856	0
chr11	105794711	105795726	T47D_Burge_Thompson.8974	0	.	105794711	105795726	0	1	1015	0
chr11	106643501	106644099	H1_polyA+.35578	0	.	106643501	106644099	0	1	598	0
chr11	106644561	106647629	B_cells_Cheung.59791	0	.	106644561	106647629	0	1	3068	0
chr11	106644571	106647761	H1_polyA+.35579	0	.	106644571	106647761	0	1	3190	0
chr11	106644586	106647141	prostate_carcinoma.31203	0	.	106644586	106647141	0	1	2555	0
chr11	106644658	106647728	HepG2_Caltech_ENCODE.11212	0	.	106644658	106647728	0	1	3070	0
chr11	106645634	106647748	REMC_LuminalBreast.32347	0	.	106645634	106647748	0	1	2114	0
chr11	106651095	106653117	H1_polyA+.35582	0	.	106651095	106653117	0	1	2022	0
chr11	106651332	106655946	B_cells_Cheung.59794	0	.	106651332	106655946	0	1	4614	0
chr11	106651462	106652820	REMC_MyoepithelialBreast.30089	0	.	106651462	106652820	0	1	1358	0
chr11	106651982	106653126	B_Cells_Pritchard.1035899	0	.	106651982	106653126	0	1	1144	0
chr11	106652013	106655956	REMC_LuminalBreast.32350	0	.	106652013	106655956	0	1	3943	0
chr11	106658945	106661153	H1_polyA+.35585	0	.	106658945	106661153	0	1	2208	0
chr11	106661406	106662637	H1_polyA+.35586	0	.	106661406	106662637	0	1	1231	0
chr11	106661426	106669049	REMC_LuminalBreast.32356	0	.	106661426	106669049	0	1	7623	0
chr11	106661450	106662569	MIP101.21361	0	.	106661450	106662569	0	1	1119	0
chr11	106661480	106662611	REMC_MyoepithelialBreast.30093	0	.	106661480	106662611	0	1	1131	0
chr11	106669266	106670334	B_cells_Cheung.59803	0	.	106669266	106670334	0	1	1068	0
chr11	106669275	106671827	REMC_MyoepithelialBreast.30096	0	.	106669275	106671827	0	1	2552	0
chr11	106669297	106670341	REMC_LuminalBreast.32352	0	.	106669297	106670341	0	1	1044	0
chr11	106669299	106671272	H1_polyA+.35588	0	.	106669299	106671272	0	1	1973	0
chr11	106669306	106670610	REMC_BreastStem.16572	0	.	106669306	106670610	0	1	1304	0
chr11	106670399	106671851	REMC_LuminalBreast.32353	0	.	106670399	106671851	0	1	1452	0
chr11	106677845	106683096	H1_polyA+.35621	0	.	106677845	106683096	0	1	5251	0
chr11	106680109	106685577	REMC_MyoepithelialBreast.30100	0	.	106680109	106685577	0	1	5468	0
chr11	106680125	106685756	REMC_LuminalBreast.32362	0	.	106680125	106685756	0	1	5631	0
chr11	106680125	106691560	REMC_LuminalBreast.32361	0	-	106680125	106691560	0	2	4237,4462	0,6973
chr11	106680230	106682275	MIP101.21369	0	.	106680230	106682275	0	1	2045	0
chr11	106680323	106681501	B_cells_Cheung.59811	0	.	106680323	106681501	0	1	1178	0
chr11	106694851	106701061	B_cells_Cheung.59819	0	.	106694851	106701061	0	1	6210	0
chr11	106694859	106701082	B_Cells_Pritchard.1036007	0	.	106694859	106701082	0	1	6223	0
chr11	106694863	106698427	CD4_Plagnol_activated.19716	0	.	106694863	106698427	0	1	3564	0
chr11	106694883	106701379	prostate_carcinoma.31215	0	+	106694883	106701379	0	2	2882,55	0,6441
chr11	106694883	106698394	prostate_carcinoma.31216	0	.	106694883	106698394	0	1	3511	0
chr11	106695398	106698249	H9_polyA+.14176	0	.	106695398	106698249	0	1	2851	0
chr11	106695488	106697856	BT20_Thompson.6680	0	.	106695488	106697856	0	1	2368	0
chr11	106695761	106697639	K562.14515	0	.	106695761	106697639	0	1	1878	0
chr11	106695798	106698174	CD4_Plagnol_resting.19003	0	.	106695798	106698174	0	1	2376	0
chr11	106696083	106697609	MCF10A_Thompson.6817	0	.	106696083	106697609	0	1	1526	0
chr11	106696236	106698793	melanoma_Garraway_short_term_cultures.20753	0	.	106696236	106698793	0	1	2557	0
chr11	106696259	106697934	prostate_normal.18142	0	.	106696259	106697934	0	1	1675	0
chr11	106696353	106697960	HeLa_polyA+_Chen.11414	0	.	106696353	106697960	0	1	1607	0
chr11	106696373	106698014	brain_AmbionMAQC.13623	0	.	106696373	106698014	0	1	1641	0
chr11	106696812	106698355	T47D_Burge_Thompson.8986	0	.	106696812	106698355	0	1	1543	0
chr11	106696867	106697520	ZR751_Thompson.7530	0	.	106696867	106697520	0	1	653	0
chr11	106697124	106698723	MDAMB468_Thompson.7880	0	.	106697124	106698723	0	1	1599	0
chr11	106697208	106697610	liver_polyA+.42254	0	.	106697208	106697610	0	1	402	0
chr11	106697335	106698004	NEC_from_H9.23264	0	.	106697335	106698004	0	1	669	0
chr11	107076546	107076910	REMC_BreastStem.16578	0	.	107076546	107076910	0	1	364	0
chr11	107134523	107135379	REMC_BreastStem.16606	0	.	107134523	107135379	0	1	856	0
chr11	107139418	107140388	REMC_BreastStem.16607	0	.	107139418	107140388	0	1	970	0
chr11	107879193	107880170	REMC_LuminalBreast.38282	0	.	107879193	107880170	0	1	977	0
chr11	107879547	107879897	liver_polyA+.42362	0	.	107879547	107879897	0	1	350	0
chr11	108318531	108319542	B_cells_Cheung.60321	0	.	108318531	108319542	0	1	1011	0
chr11	108329414	108330378	REMC_MyoepithelialBreast.30324	0	.	108329414	108330378	0	1	964	0
chr11	108355208	108369946	pHIT000110946	0	-	108355208	108369946	0	4	49,120,122,78	0,3638,5724,14660
chr11	108406811	108414349	REMC_MyoepithelialBreast.30326	0	-	108406811	108414349	0	2	437,670	0,6868
chr11	108651193	108651956	B_Cells_Pritchard.1040709	0	.	108651193	108651956	0	1	763	0
chr11	108676877	108677319	B_Cells_Pritchard.1040795	0	.	108676877	108677319	0	1	442	0
chr11	108694485	108695375	melanoma_Garraway_short_term_cultures.20863	0	.	108694485	108695375	0	1	890	0
chr11	108757493	108757951	B_cells_Cheung.60332	0	.	108757493	108757951	0	1	458	0
chr11	108942872	108944257	B_cells_Cheung.60356	0	.	108942872	108944257	0	1	1385	0
chr11	108994465	108995097	B_cells_Cheung.60360	0	.	108994465	108995097	0	1	632	0
chr11	108995895	108997218	B_cells_Cheung.60361	0	.	108995895	108997218	0	1	1323	0
chr11	109069664	109070146	B_Cells_Pritchard.1041905	0	.	109069664	109070146	0	1	482	0
chr11	109072176	109072966	B_Cells_Pritchard.1041917	0	.	109072176	109072966	0	1	790	0
chr11	109117575	109118078	B_cells_Cheung.60379	0	.	109117575	109118078	0	1	503	0
chr11	109242844	109243398	B_cells_Cheung.60401	0	.	109242844	109243398	0	1	554	0
chr11	109243522	109244237	B_cells_Cheung.60402	0	.	109243522	109244237	0	1	715	0
chr11	109320767	109321829	B_Cells_Pritchard.1042721	0	.	109320767	109321829	0	1	1062	0
chr11	109320791	109321800	B_cells_Cheung.60428	0	.	109320791	109321800	0	1	1009	0
chr11	109321973	109354019	B_cells_Cheung.60429	0	+	109321973	109354019	0	3	670,80,5576	0,26288,26470
chr11	109322015	109323017	B_Cells_Pritchard.1042725	0	.	109322015	109323017	0	1	1002	0
chr11	109324507	109326615	B_Cells_Pritchard.1042729	0	.	109324507	109326615	0	1	2108	0
chr11	109324684	109325943	B_cells_Cheung.60433	0	.	109324684	109325943	0	1	1259	0
chr11	109325434	109326704	REMC_LuminalBreast.32576	0	.	109325434	109326704	0	1	1270	0
chr11	109325999	109326579	B_cells_Cheung.60434	0	.	109325999	109326579	0	1	580	0
chr11	109331757	109332302	B_Cells_Pritchard.1042757	0	-	109331757	109332302	0	1	545	0
chr11	109331938	109332244	B_cells_Cheung.60442	0	.	109331938	109332244	0	1	306	0
chr11	109348047	109351710	B_cells_Cheung.60430	0	.	109348047	109351710	0	1	3663	0
chr11	109349082	109349778	B_Cells_Pritchard.1042819	0	.	109349082	109349778	0	1	696	0
chr11	109354761	109355083	B_cells_Cheung.60452	0	.	109354761	109355083	0	1	322	0
chr11	109373139	109374714	B_cells_Cheung.60461	0	.	109373139	109374714	0	1	1575	0
chr11	109373331	109374229	B_Cells_Pritchard.1042885	0	.	109373331	109374229	0	1	898	0
chr11	109394685	109410675	B_cells_Cheung.60484	0	+	109394685	109410675	0	3	4107,1294,3397	0,7657,12593
chr11	109394685	109399465	B_cells_Cheung.60485	0	.	109394685	109399465	0	1	4780	0
chr11	109394935	109396768	B_Cells_Pritchard.1042979	0	.	109394935	109396768	0	1	1833	0
chr11	109395685	109396774	REMC_LuminalBreast.32590	0	.	109395685	109396774	0	1	1089	0
chr11	109406105	109410675	B_cells_Cheung.60486	0	.	109406105	109410675	0	1	4570	0
chr11	109416543	109418738	B_cells_Cheung.60502	0	.	109416543	109418738	0	1	2195	0
chr11	109417798	109419947	REMC_LuminalBreast.32597	0	.	109417798	109419947	0	1	2149	0
chr11	109418131	109418679	B_Cells_Pritchard.1043005	0	.	109418131	109418679	0	1	548	0
chr11	109418139	109419103	melanoma_Garraway_short_term_cultures.20893	0	.	109418139	109419103	0	1	964	0
chr11	109438194	109443546	REMC_LuminalBreast.32604	0	.	109438194	109443546	0	1	5352	0
chr11	109439520	109441487	B_cells_Cheung.60518	0	.	109439520	109441487	0	1	1967	0
chr11	109444000	109445816	B_cells_Cheung.60521	0	.	109444000	109445816	0	1	1816	0
chr11	109444291	109446074	melanoma_Garraway_short_term_cultures.20899	0	.	109444291	109446074	0	1	1783	0
chr11	109444352	109446182	REMC_LuminalBreast.32605	0	.	109444352	109446182	0	1	1830	0
chr11	109448105	109454455	B_cells_Cheung.60836	0	.	109448105	109454455	0	1	6350	0
chr11	109450969	109452328	REMC_LuminalBreast.32607	0	.	109450969	109452328	0	1	1359	0
chr11	109451148	109452263	REMC_MyoepithelialBreast.30359	0	.	109451148	109452263	0	1	1115	0
chr11	109463773	109466639	melanoma_Garraway_short_term_cultures.20903	0	.	109463773	109466639	0	1	2866	0
chr11	109465706	109466591	MeI_Garraway.5624	0	.	109465706	109466591	0	1	885	0
chr11	109686673	109687354	MCF7_Burge_Thompson.9379	0	.	109686673	109687354	0	1	681	0
chr11	109704149	109709953	B_cells_Cheung.60604	0	+	109704149	109709953	0	2	309,2825	0,2979
chr11	109706249	109709953	B_cells_Cheung.60605	0	.	109706249	109709953	0	1	3704	0
chr11	109708788	109716962	B_Cells_Pritchard.1043621	0	+	109708788	109716962	0	5	1137,78,197,1501,1794	0,3921,4140,4596,6380
chr11	109715145	109717008	B_cells_Cheung.60609	0	.	109715145	109717008	0	1	1863	0
chr11	109746184	109747028	melanoma_Garraway_short_term_cultures.20973	0	.	109746184	109747028	0	1	844	0
chr11	109746186	109746940	B_cells_Cheung.60621	0	.	109746186	109746940	0	1	754	0
chr11	109780611	109781617	melanoma_Garraway_short_term_cultures.20985	0	.	109780611	109781617	0	1	1006	0
chr11	109782631	109783515	H1_polyA+.35767	0	.	109782631	109783515	0	1	884	0
chr11	109800201	109801131	melanoma_Garraway_short_term_cultures.20990	0	.	109800201	109801131	0	1	930	0
chr11	109804312	109805166	kidney_Gilad.27522	0	-	109804312	109805166	0	2	521,62	0,792
chr11	109843180	109843898	B_cells_Cheung.60663	0	.	109843180	109843898	0	1	718	0
chr11	109843229	109843907	H1_polyA+.35783	0	.	109843229	109843907	0	1	678	0
chr11	109850791	109853861	REMC_LuminalBreast.32649	0	.	109850791	109853861	0	1	3070	0
chr11	109852605	109854564	REMC_MyoepithelialBreast.30408	0	.	109852605	109854564	0	1	1959	0
chr11	109853397	109853857	B_Cells_Pritchard.1044007	0	.	109853397	109853857	0	1	460	0
chr11	109858229	109863562	REMC_MyoepithelialBreast.30412	0	.	109858229	109863562	0	1	5333	0
chr11	109859333	109860591	REMC_BreastStem.16665	0	.	109859333	109860591	0	1	1258	0
chr11	110260954	110262052	B_Cells_Pritchard.1045267	0	.	110260954	110262052	0	1	1098	0
chr11	110367863	110368273	B_Cells_Pritchard.1045711	0	.	110367863	110368273	0	1	410	0
chr11	110400342	110401886	B_Cells_Pritchard.1045837	0	.	110400342	110401886	0	1	1544	0
chr11	110400988	110401825	melanoma_Garraway_short_term_cultures.21007	0	.	110400988	110401825	0	1	837	0
chr11	110404820	110405450	B_Cells_Pritchard.1045863	0	+	110404820	110405450	0	1	630	0
chr11	110471411	110471953	B_cells_Cheung.60686	0	.	110471411	110471953	0	1	542	0
chr11	110545440	110547186	B_Cells_Pritchard.1046439	0	.	110545440	110547186	0	1	1746	0
chr11	110700131	110703231	B_Cells_Pritchard.1046859	0	.	110700131	110703231	0	1	3100	0
chr11	110707236	110708122	B_Cells_Pritchard.1046875	0	.	110707236	110708122	0	1	886	0
chr11	110709591	110723619	B_Cells_Pritchard.1046885	0	+	110709591	110723619	0	2	11,3893	0,10135
chr11	110718149	110723641	B_cells_Cheung.60726	0	.	110718149	110723641	0	1	5492	0
chr11	110724368	110726088	B_cells_Cheung.60728	0	.	110724368	110726088	0	1	1720	0
chr11	110725152	110726065	B_Cells_Pritchard.1046937	0	.	110725152	110726065	0	1	913	0
chr11	110946370	110949660	REMC_BreastStem.16744	0	.	110946370	110949660	0	1	3290	0
chr11	111149352	111151575	REMC_MyoepithelialBreast.30804	0	.	111149352	111151575	0	1	2223	0
chr11	111150106	111150853	REMC_BreastStem.16740	0	.	111150106	111150853	0	1	747	0
chr11	111155025	111155464	B_cells_Cheung.60857	0	.	111155025	111155464	0	1	439	0
chr11	111267957	111268890	REMC_MyoepithelialBreast.30821	0	.	111267957	111268890	0	1	933	0
chr11	111270185	111272798	H1_polyA+.36030	0	.	111270185	111272798	0	1	2613	0
chr11	111271655	111273661	REMC_MyoepithelialBreast.30823	0	.	111271655	111273661	0	1	2006	0
chr11	111650726	111653686	REMC_LuminalBreast.33121	0	.	111650726	111653686	0	1	2960	0
chr11	111651492	111653602	B_cells_Cheung.61092	0	.	111651492	111653602	0	1	2110	0
chr11	111652913	111653631	REMC_MyoepithelialBreast.30532	0	.	111652913	111653631	0	1	718	0
chr11	111659309	111659729	B_cells_Cheung.61098	0	.	111659309	111659729	0	1	420	0
chr11	111663824	111664760	prostate_carcinoma.31560	0	.	111663824	111664760	0	1	936	0
chr11	111664129	111664772	B_cells_Cheung.61102	0	.	111664129	111664772	0	1	643	0
chr11	111664994	111666079	REMC_MyoepithelialBreast.30533	0	.	111664994	111666079	0	1	1085	0
chr11	111665364	111666567	B_cells_Cheung.61103	0	.	111665364	111666567	0	1	1203	0
chr11	111665385	111666092	B_Cells_Pritchard.1049727	0	.	111665385	111666092	0	1	707	0
chr11	111665433	111669999	prostate_carcinoma.31561	0	+	111665433	111669999	0	2	1009,2747	0,1819
chr11	111665847	111666452	A549_Myers.24683	0	.	111665847	111666452	0	1	605	0
chr11	111665998	111669892	prostate_normal.18302	0	+	111665998	111669892	0	3	444,427,233	0,1181,3661
chr11	111666647	111667825	REMC_BreastStem.16784	0	.	111666647	111667825	0	1	1178	0
chr11	111667092	111667711	B_Cells_Pritchard.1049733	0	.	111667092	111667711	0	1	619	0
chr11	111667165	111667705	liver_polyA+.42760	0	.	111667165	111667705	0	1	540	0
chr11	111667175	111667748	BT20_Thompson.6769	0	.	111667175	111667748	0	1	573	0
chr11	111669185	111670027	HepG2_Caltech_ENCODE.11314	0	.	111669185	111670027	0	1	842	0
chr11	111669248	111670350	REMC_MyoepithelialBreast.30534	0	.	111669248	111670350	0	1	1102	0
chr11	111669555	111670050	melanoma_Garraway_short_term_cultures.21098	0	.	111669555	111670050	0	1	495	0
chr11	111669597	111670121	H1_polyA+.35981	0	.	111669597	111670121	0	1	524	0
chr11	111673359	111674541	REMC_MyoepithelialBreast.30535	0	.	111673359	111674541	0	1	1182	0
chr11	111674508	111675308	REMC_LuminalBreast.32834	0	.	111674508	111675308	0	1	800	0
chr11	111685698	111687312	REMC_LuminalBreast.32840	0	.	111685698	111687312	0	1	1614	0
chr11	111711556	111712608	B_Cells_Pritchard.1049901	0	.	111711556	111712608	0	1	1052	0
chr11	111711781	111712608	prostate_carcinoma.31563	0	.	111711781	111712608	0	1	827	0
chr11	111718676	111719810	REMC_LuminalBreast.32850	0	.	111718676	111719810	0	1	1134	0
chr11	111733473	111757554	REMC_LuminalBreast.32854	0	+	111733473	111757554	0	6	36,45,263,5976,714,6076	0,562,2453,2739,8910,18005
chr11	111734040	111753822	REMC_MyoepithelialBreast.30538	0	+	111734040	111753822	0	6	40,188,5603,55,150,2344	0,1961,2545,8343,8907,17438
chr11	111735894	111737748	prostate_carcinoma.31564	0	.	111735894	111737748	0	1	1854	0
chr11	111735898	111737511	B_cells_Cheung.61114	0	.	111735898	111737511	0	1	1613	0
chr11	111736002	111737743	B_Cells_Pritchard.1050007	0	.	111736002	111737743	0	1	1741	0
chr11	111736097	111737741	MIP101.21599	0	.	111736097	111737741	0	1	1644	0
chr11	111736316	111738292	HepG2_Caltech_ENCODE.11315	0	.	111736316	111738292	0	1	1976	0
chr11	111736556	111737694	K562.14660	0	.	111736556	111737694	0	1	1138	0
chr11	111736582	111737338	prostate_normal.18303	0	.	111736582	111737338	0	1	756	0
chr11	111737350	111737709	liver_polyA+.42769	0	.	111737350	111737709	0	1	359	0
chr11	111744096	111745408	REMC_LuminalBreast.32855	0	.	111744096	111745408	0	1	1312	0
chr11	111751087	111757554	REMC_LuminalBreast.32853	0	.	111751087	111757554	0	1	6467	0
chr11	111752487	111753159	K562.14663	0	.	111752487	111753159	0	1	672	0
chr11	111767671	111768414	prostate_carcinoma.31571	0	.	111767671	111768414	0	1	743	0
chr11	111841199	111849245	REMC_MyoepithelialBreast.30543	0	+	111841199	111849245	0	2	1021,35	0,8011
chr11	111910071	111931735	HIT000264349	0	-	111910071	111931735	0	4	1714,111,197,126	0,14108,19026,21538
chr11	111910154	111931735	ENST00000525984	0	-	111910154	111931735	0	4	1631,111,197,126	0,14025,18943,21455
chr11	111997678	112000647	B_cells_Cheung.61125	0	+	111997678	112000647	0	2	20,901	0,2068
chr11	111997751	111998137	B_cells_Cheung.61128	0	.	111997751	111998137	0	1	386	0
chr11	111998263	111998967	B_cells_Cheung.61129	0	.	111998263	111998967	0	1	704	0
chr11	112163545	112176053	melanoma_Garraway_short_term_cultures.21106	0	+	112163545	112176053	0	2	110,4679	0,7829
chr11	112176359	112178266	melanoma_Garraway_short_term_cultures.21107	0	.	112176359	112178266	0	1	1907	0
chr11	112659406	112660524	B_Cells_Pritchard.1052255	0	.	112659406	112660524	0	1	1118	0
chr11	112659459	112659782	B_cells_Cheung.61140	0	.	112659459	112659782	0	1	323	0
chr11	112779476	112780639	prostate_carcinoma.31593	0	.	112779476	112780639	0	1	1163	0
chr11	112780767	112781594	prostate_carcinoma.31594	0	.	112780767	112781594	0	1	827	0
chr11	112781691	112783753	HIT000047053	0	-	112781691	112783753	0	1	2062	0
chr11	112781729	112782854	prostate_carcinoma.31595	0	.	112781729	112782854	0	1	1125	0
chr11	113005557	113006004	pHIT000020610	0	+	113005557	113006004	0	1	447	0
chr11	113012126	113061874	pHIT000020611	0	+	113012126	113061874	0	6	116,62,48,174,96,44	0,37978,44014,46608,48625,49704
chr11	113046468	113049140	HIT000006077	0	+	113046468	113049140	0	1	2672	0
chr11	113048739	113050110	REMC_LuminalBreast.32893	0	.	113048739	113050110	0	1	1371	0
chr11	113049361	113054330	MIP101.21617	0	.	113049361	113054330	0	1	4969	0
chr11	113049487	113050702	H1_polyA+.36035	0	.	113049487	113050702	0	1	1215	0
chr11	113055295	113057690	H1_polyA+.36037	0	.	113055295	113057690	0	1	2395	0
chr11	113057632	113060178	MIP101.21623	0	.	113057632	113060178	0	1	2546	0
chr11	113058228	113062432	REMC_LuminalBreast.32896	0	.	113058228	113062432	0	1	4204	0
chr11	113058752	113061003	REMC_MyoepithelialBreast.30566	0	.	113058752	113061003	0	1	2251	0
chr11	113086791	113088227	REMC_BreastStem.16815	0	.	113086791	113088227	0	1	1436	0
chr11	113087633	113088051	H1_polyA+.36050	0	.	113087633	113088051	0	1	418	0
chr11	113087685	113088227	REMC_MyoepithelialBreast.30572	0	.	113087685	113088227	0	1	542	0
chr11	113096995	113106213	khalil_408	0	.	113096995	113106213	0	6	440,153,237,308,503,1015	0,638,1170,6125,7627,8203
chr11	113105791	113107756	H1_polyA+.36057	0	.	113105791	113107756	0	1	1965	0
chr11	113165162	113167092	HIT000018220	0	+	113165162	113167092	0	1	1930	0
chr11	113165223	113165690	K562.14687	0	.	113165223	113165690	0	1	467	0
chr11	113165335	113166663	pHIT000020616	0	+	113165335	113166663	0	2	292,428	0,900
chr11	113165981	113167385	XR_039539	0	+	113165981	113167385	0	1	1404	0
chr11	113166367	113170516	B_Cells_Pritchard.1062427	0	+	113166367	113170516	0	2	164,353	0,3796
chr11	113253151	113253624	B_cells_Cheung.61251	0	.	113253151	113253624	0	1	473	0
chr11	113630069	113632073	CD4_Plagnol_resting.19329	0	.	113630069	113632073	0	1	2004	0
chr11	113630121	113631810	CD4_Plagnol_activated.20047	0	.	113630121	113631810	0	1	1689	0
chr11	113630151	113632112	adipose_Burge.12110	0	.	113630151	113632112	0	1	1961	0
chr11	113630163	113631911	heart_Burge.9438	0	.	113630163	113631911	0	1	1748	0
chr11	113630166	113631885	breast_Burge.12779	0	.	113630166	113631885	0	1	1719	0
chr11	113630170	113631910	lymph_node_Burge.15463	0	.	113630170	113631910	0	1	1740	0
chr11	113630172	113631920	colon_Burge.11885	0	.	113630172	113631920	0	1	1748	0
chr11	113630183	113631920	testes_Burge.16553	0	.	113630183	113631920	0	1	1737	0
chr11	113630689	113633666	heart_Raymond.21215	0	+	113630689	113633666	0	2	365,57	0,2920
chr11	113631086	113631740	HME_Burge.12964	0	.	113631086	113631740	0	1	654	0
chr11	113631089	113631697	H1_polyA+.36072	0	.	113631089	113631697	0	1	608	0
chr11	113696568	113697878	liver_polyA+.45243	0	.	113696568	113697878	0	1	1310	0
chr11	113696576	113700226	REMC_LuminalBreast.32926	0	.	113696576	113700226	0	1	3650	0
chr11	113696584	113698339	MCF10A_Thompson.6913	0	.	113696584	113698339	0	1	1755	0
chr11	113701772	113705263	REMC_LuminalBreast.32928	0	.	113701772	113705263	0	1	3491	0
chr11	113701890	113704629	prostate_carcinoma.31728	0	.	113701890	113704629	0	1	2739	0
chr11	113704701	113705244	prostate_carcinoma.31729	0	.	113704701	113705244	0	1	543	0
chr11	113708885	113712976	REMC_LuminalBreast.32931	0	.	113708885	113712976	0	1	4091	0
chr11	113714066	113717989	REMC_MyoepithelialBreast.30958	0	.	113714066	113717989	0	1	3923	0
chr11	113714117	113715929	REMC_LuminalBreast.32933	0	.	113714117	113715929	0	1	1812	0
chr11	113718119	113726789	REMC_MyoepithelialBreast.30959	0	.	113718119	113726789	0	1	8670	0
chr11	113724901	113726454	REMC_LuminalBreast.32935	0	.	113724901	113726454	0	1	1553	0
chr11	113726946	113744412	REMC_MyoepithelialBreast.30960	0	.	113726946	113744412	0	1	17466	0
chr11	113943346	113944538	REMC_MyoepithelialBreast.30618	0	.	113943346	113944538	0	1	1192	0
chr11	114323597	114324017	B_Cells_Pritchard.1056367	0	.	114323597	114324017	0	1	420	0
chr11	114396712	114397221	B_Cells_Pritchard.1056621	0	.	114396712	114397221	0	1	509	0
chr11	114465019	114465358	B_cells_Cheung.61335	0	.	114465019	114465358	0	1	339	0
chr11	114466324	114467146	B_Cells_Pritchard.1056905	0	-	114466324	114467146	0	1	822	0
chr11	114466520	114467156	B_cells_Cheung.61338	0	.	114466520	114467156	0	1	636	0
chr11	114467376	114468967	B_cells_Cheung.61340	0	.	114467376	114468967	0	1	1591	0
chr11	114522813	114523371	BT474_Burge_Thompson.10557	0	.	114522813	114523371	0	1	558	0
chr11	114522953	114525096	B_Cells_Pritchard.1057137	0	+	114522953	114525096	0	2	955,390	0,1753
chr11	114523577	114525154	BT474_Burge_Thompson.10558	0	.	114523577	114525154	0	1	1577	0
chr11	114540595	114541569	brain_AmbionMAQC.13844	0	.	114540595	114541569	0	1	974	0
chr11	115014490	115022903	HIT000054296	0	+	115014490	115022903	0	1	8413	0
chr11	115035095	115037345	HIT000044861	0	-	115035095	115037345	0	1	2250	0
chr11	115064060	115076324	pHIT000110998	0	+	115064060	115076324	0	4	228,155,61,51	0,4487,11342,12213
chr11	115128998	115129610	brain_AmbionMAQC.13857	0	.	115128998	115129610	0	1	612	0
chr11	115129014	115129750	prostate_carcinoma.31840	0	.	115129014	115129750	0	1	736	0
chr11	115130175	115136122	HIT000015469	0	-	115130175	115136122	0	3	3045,112,165	0,3893,5782
chr11	115130175	115136122	ENST00000499809	0	-	115130175	115136122	0	3	3045,112,165	0,3893,5782
chr11	115130851	115134431	H1_polyA+.36153	0	.	115130851	115134431	0	1	3580	0
chr11	115130968	115133334	prostate_carcinoma.31842	0	.	115130968	115133334	0	1	2366	0
chr11	115131258	115136128	NR_034148	0	-	115131258	115136128	0	3	1962,112,171	0,2810,4699
chr11	115131893	115136100	Rinn_00019768	0	-	115131893	115136100	0	2	2287,144	0,4063
chr11	115131981	115133338	prostate_normal.18471	0	.	115131981	115133338	0	1	1357	0
chr11	115132780	115133333	B_cells_Cheung.61351	0	.	115132780	115133333	0	1	553	0
chr11	115133390	115136125	HIT000426174	0	+	115133390	115136125	0	2	790,205	0,2530
chr11	115134713	115135601	prostate_carcinoma.31844	0	.	115134713	115135601	0	1	888	0
chr11	115135652	115136129	A549_Myers.24767	0	.	115135652	115136129	0	1	477	0
chr11	115185058	115185751	B_cells_Cheung.61355	0	.	115185058	115185751	0	1	693	0
chr11	115212153	115212916	B_cells_Cheung.61357	0	.	115212153	115212916	0	1	763	0
chr11	115300635	115300958	B_cells_Cheung.61388	0	.	115300635	115300958	0	1	323	0
chr11	115302506	115305605	B_cells_Cheung.61390	0	.	115302506	115305605	0	1	3099	0
chr11	115305679	115306855	B_cells_Cheung.61391	0	.	115305679	115306855	0	1	1176	0
chr11	115305697	115306485	B_Cells_Pritchard.1059653	0	.	115305697	115306485	0	1	788	0
chr11	115320045	115323162	B_Cells_Pritchard.1059727	0	.	115320045	115323162	0	1	3117	0
chr11	115321341	115322885	B_cells_Cheung.61398	0	.	115321341	115322885	0	1	1544	0
chr11	115323293	115324898	B_Cells_Pritchard.1059719	0	.	115323293	115324898	0	1	1605	0
chr11	115323446	115324277	B_cells_Cheung.61400	0	.	115323446	115324277	0	1	831	0
chr11	115328008	115328542	B_cells_Cheung.61404	0	.	115328008	115328542	0	1	534	0
chr11	115333530	115334960	B_cells_Cheung.61405	0	.	115333530	115334960	0	1	1430	0
chr11	115355331	115356877	B_Cells_Pritchard.1059821	0	.	115355331	115356877	0	1	1546	0
chr11	115355367	115356958	B_cells_Cheung.61406	0	.	115355367	115356958	0	1	1591	0
chr11	115355424	115356415	H1_polyA+.36164	0	.	115355424	115356415	0	1	991	0
chr11	115356479	115357035	H1_polyA+.36165	0	.	115356479	115357035	0	1	556	0
chr11	115391107	115393502	B_cells_Cheung.61412	0	.	115391107	115393502	0	1	2395	0
chr11	115394326	115395620	B_cells_Cheung.61414	0	.	115394326	115395620	0	1	1294	0
chr11	115396928	115399465	B_cells_Cheung.61416	0	.	115396928	115399465	0	1	2537	0
chr11	115399421	115400174	H1_polyA+.36169	0	.	115399421	115400174	0	1	753	0
chr11	115399436	115399996	B_Cells_Pritchard.1059965	0	.	115399436	115399996	0	1	560	0
chr11	115399555	115400445	B_cells_Cheung.61417	0	.	115399555	115400445	0	1	890	0
chr11	115417501	115419252	B_cells_Cheung.61421	0	.	115417501	115419252	0	1	1751	0
chr11	115417533	115419149	H1_polyA+.36172	0	.	115417533	115419149	0	1	1616	0
chr11	115429046	115429474	B_cells_Cheung.61426	0	.	115429046	115429474	0	1	428	0
chr11	115434382	115434973	B_Cells_Pritchard.1060141	0	.	115434382	115434973	0	1	591	0
chr11	115435193	115438479	H1_polyA+.36179	0	.	115435193	115438479	0	1	3286	0
chr11	115437043	115438735	B_Cells_Pritchard.1060161	0	.	115437043	115438735	0	1	1692	0
chr11	115437260	115437957	B_cells_Cheung.61431	0	.	115437260	115437957	0	1	697	0
chr11	115438067	115439363	B_cells_Cheung.61432	0	.	115438067	115439363	0	1	1296	0
chr11	115438681	115439452	H1_polyA+.36180	0	.	115438681	115439452	0	1	771	0
chr11	115439434	115439867	B_cells_Cheung.61433	0	.	115439434	115439867	0	1	433	0
chr11	115439519	115440498	H1_polyA+.36181	0	.	115439519	115440498	0	1	979	0
chr11	115485810	115489965	H1_polyA+.36233	0	.	115485810	115489965	0	1	4155	0
chr11	115501251	115501641	H9_polyA+.14358	0	.	115501251	115501641	0	1	390	0
chr11	115519833	115520772	H1_polyA+.36247	0	.	115519833	115520772	0	1	939	0
chr11	115569231	115569834	prostate_carcinoma.31845	0	.	115569231	115569834	0	1	603	0
chr11	115581243	115581754	H1_rRNA-depleted_UCSD_REMC.27864	0	.	115581243	115581754	0	1	511	0
chr11	115605197	115605557	B_cells_Cheung.61440	0	.	115605197	115605557	0	1	360	0
chr11	115617547	115618982	H1_polyA+.36262	0	.	115617547	115618982	0	1	1435	0
chr11	115640344	115641652	H1_polyA+.36264	0	.	115640344	115641652	0	1	1308	0
chr11	115648030	115648702	H1_polyA+.36267	0	.	115648030	115648702	0	1	672	0
chr11	115650933	115651406	H1_rRNA-depleted_UCSD_REMC.27888	0	.	115650933	115651406	0	1	473	0
chr11	115658913	115659437	H1_polyA+.36268	0	.	115658913	115659437	0	1	524	0
chr11	115749185	115750322	H1_polyA+.36192	0	.	115749185	115750322	0	1	1137	0
chr11	115751708	115753549	H1_polyA+.36193	0	.	115751708	115753549	0	1	1841	0
chr11	115760474	115761266	H1_polyA+.36198	0	.	115760474	115761266	0	1	792	0
chr11	115778116	115779815	H1_polyA+.36206	0	.	115778116	115779815	0	1	1699	0
chr11	115781677	115783648	H1_polyA+.36207	0	.	115781677	115783648	0	1	1971	0
chr11	115788056	115788950	H1_polyA+.36210	0	.	115788056	115788950	0	1	894	0
chr11	115792047	115795039	H1_polyA+.36212	0	.	115792047	115795039	0	1	2992	0
chr11	115816052	115816603	H1_polyA+.36218	0	.	115816052	115816603	0	1	551	0
chr11	115955629	115955945	testes_Burge.16575	0	.	115955629	115955945	0	1	316	0
chr11	116026382	116032636	H1_polyA+.36225	0	.	116026382	116032636	0	1	6254	0
chr11	116026495	116029808	HepG2_Caltech_ENCODE.11370	0	.	116026495	116029808	0	1	3313	0
chr11	116027098	116027536	B_cells_Cheung.61516	0	.	116027098	116027536	0	1	438	0
chr11	116030037	116032192	HepG2_Caltech_ENCODE.11369	0	.	116030037	116032192	0	1	2155	0
chr11	116030304	116030790	B_cells_Cheung.61517	0	.	116030304	116030790	0	1	486	0
chr11	116032325	116043084	HepG2_Caltech_ENCODE.11371	0	-	116032325	116043084	0	2	166,448	0,10311
chr11	116035156	116036054	H1_polyA+.36226	0	.	116035156	116036054	0	1	898	0
chr11	116036740	116037129	B_Cells_Pritchard.1061847	0	.	116036740	116037129	0	1	389	0
chr11	116038245	116039397	H1_polyA+.36227	0	.	116038245	116039397	0	1	1152	0
chr11	116063622	116064088	B_Cells_Pritchard.1061919	0	.	116063622	116064088	0	1	466	0
chr11	116070376	116070749	B_Cells_Pritchard.1062015	0	.	116070376	116070749	0	1	373	0
chr11	116071675	116072080	BT474_Burge_Thompson.10561	0	.	116071675	116072080	0	1	405	0
chr11	116080882	116101885	pHIT000020646	0	+	116080882	116101885	0	4	18,69,137,157	0,14231,14962,20846
chr11	116095113	116101885	pHIT000020648	0	+	116095113	116101885	0	3	69,137,157	0,731,6615
chr11	116113625	116114727	MIP101.21680	0	.	116113625	116114727	0	1	1102	0
chr11	116151034	116151802	Rinn_00019175	0	-	116151034	116151802	0	2	225,375	0,393
chr11	116151035	116151802	ENST00000366405	0	-	116151035	116151802	0	2	224,374	0,393
chr11	116151568	116153310	ZR751_Thompson.7648	0	.	116151568	116153310	0	1	1742	0
chr11	116151569	116153334	H9_polyA+.14381	0	.	116151569	116153334	0	1	1765	0
chr11	116151573	116153316	MCF10A_Thompson.6933	0	.	116151573	116153316	0	1	1743	0
chr11	116151579	116153343	B_Cells_Pritchard.1062239	0	.	116151579	116153343	0	1	1764	0
chr11	116151580	116153329	CD4_Plagnol_activated.20075	0	.	116151580	116153329	0	1	1749	0
chr11	116151581	116153289	NEC_from_H9.23647	0	.	116151581	116153289	0	1	1708	0
chr11	116151583	116153280	BT20_Thompson.6803	0	.	116151583	116153280	0	1	1697	0
chr11	116151586	116153333	prostate_carcinoma.31860	0	.	116151586	116153333	0	1	1747	0
chr11	116151587	116153338	CD4_Plagnol_resting.19392	0	.	116151587	116153338	0	1	1751	0
chr11	116151588	116153343	MDAMB468_Thompson.8011	0	.	116151588	116153343	0	1	1755	0
chr11	116151588	116153304	melanoma_Garraway_short_term_cultures.21209	0	.	116151588	116153304	0	1	1716	0
chr11	116151593	116153331	brain_AmbionMAQC.13871	0	.	116151593	116153331	0	1	1738	0
chr11	116151593	116153326	prostate_normal.18477	0	.	116151593	116153326	0	1	1733	0
chr11	116151636	116153252	liver_polyA+.43233	0	.	116151636	116153252	0	1	1616	0
chr11	116151685	116153300	BT474_Burge_Thompson.10563	0	.	116151685	116153300	0	1	1615	0
chr11	116151728	116153309	HeLa_polyA+_Chen.11538	0	.	116151728	116153309	0	1	1581	0
chr11	116151730	116153300	MDAMB231_Thompson.7013	0	.	116151730	116153300	0	1	1570	0
chr11	116151798	116153329	T47D_Burge_Thompson.9137	0	.	116151798	116153329	0	1	1531	0
chr11	116151838	116153348	MCF7_Burge_Thompson.9448	0	.	116151838	116153348	0	1	1510	0
chr11	116151980	116152418	MB435_Burge.13527	0	.	116151980	116152418	0	1	438	0
chr11	116216565	116217664	B_cells_Cheung.61521	0	.	116216565	116217664	0	1	1099	0
chr11	116791355	116791908	B_Cells_Pritchard.1074219	0	-	116791355	116791908	0	1	553	0
chr11	116796040	116802101	pHIT000084967	0	-	116796040	116802101	0	2	212,97	0,5964
chr11	117206213	117207287	kidney_Raymond.34727	0	.	117206213	117207287	0	1	1074	0
chr11	117306610	117307844	B_cells_Cheung.61766	0	.	117306610	117307844	0	1	1234	0
chr11	117337848	117338242	B_cells_Cheung.61767	0	.	117337848	117338242	0	1	394	0
chr11	117380743	117382290	B_cells_Cheung.61788	0	.	117380743	117382290	0	1	1547	0
chr11	117380960	117382080	REMC_MyoepithelialBreast.30758	0	.	117380960	117382080	0	1	1120	0
chr11	117381189	117382288	prostate_carcinoma.31962	0	.	117381189	117382288	0	1	1099	0
chr11	117381472	117382556	CD4_Plagnol_resting.19460	0	.	117381472	117382556	0	1	1084	0
chr11	117382074	117382469	B_Cells_Pritchard.1065955	0	+	117382074	117382469	0	1	395	0
chr11	117444314	117444981	B_Cells_Pritchard.1065125	0	.	117444314	117444981	0	1	667	0
chr11	117502511	117502864	B_cells_Cheung.61791	0	.	117502511	117502864	0	1	353	0
chr11	117640517	117642742	HIT000022945	0	+	117640517	117642742	0	1	2225	0
chr11	118363264	118363919	B_cells_Cheung.61990	0	.	118363264	118363919	0	1	655	0
chr11	118363406	118363913	prostate_carcinoma.33658	0	.	118363406	118363913	0	1	507	0
chr11	118364169	118364786	H1_polyA+.37084	0	.	118364169	118364786	0	1	617	0
chr11	118364215	118364786	B_cells_Cheung.61991	0	.	118364215	118364786	0	1	571	0
chr11	118365030	118367164	B_cells_Cheung.61992	0	.	118365030	118367164	0	1	2134	0
chr11	118367346	118367928	B_cells_Cheung.61993	0	.	118367346	118367928	0	1	582	0
chr11	118369305	118369958	HepG2_Caltech_ENCODE.11491	0	.	118369305	118369958	0	1	653	0
chr11	118369316	118369961	BT20_Thompson.6852	0	.	118369316	118369961	0	1	645	0
chr11	118369343	118369920	CD4_Plagnol_activated.20320	0	.	118369343	118369920	0	1	577	0
chr11	118440226	118443621	Rinn_00019777	0	-	118440226	118443621	0	2	1666,205	0,3190
chr11	118494037	118494538	prostate_carcinoma.33694	0	.	118494037	118494538	0	1	501	0
chr11	118513765	118514601	B_cells_Cheung.62026	0	.	118513765	118514601	0	1	836	0
chr11	118934991	118936583	H1_polyA+.36654	0	.	118934991	118936583	0	1	1592	0
chr11	118952392	118955849	H1_polyA+.36655	0	.	118952392	118955849	0	1	3457	0
chr11	118952508	118954595	REMC_LuminalBreast.33388	0	.	118952508	118954595	0	1	2087	0
chr11	118952669	118953231	ZR751_Thompson.7749	0	.	118952669	118953231	0	1	562	0
chr11	118956074	118962390	prostate_carcinoma.32185	0	-	118956074	118962390	0	3	850,831,65	0,5052,6251
chr11	118956076	118957065	REMC_LuminalBreast.33390	0	.	118956076	118957065	0	1	989	0
chr11	118956081	118957193	MDAMB468_Thompson.8123	0	.	118956081	118957193	0	1	1112	0
chr11	118956086	118957461	H1_polyA+.36656	0	.	118956086	118957461	0	1	1375	0
chr11	118956112	118957357	ZR751_Thompson.7751	0	.	118956112	118957357	0	1	1245	0
chr11	118956114	118957273	T47D_Burge_Thompson.9241	0	.	118956114	118957273	0	1	1159	0
chr11	118956565	118957179	B_Cells_Pritchard.1068473	0	-	118956565	118957179	0	1	614	0
chr11	118959263	118959919	ZR751_Thompson.7754	0	.	118959263	118959919	0	1	656	0
chr11	118959312	118959775	prostate_carcinoma.32187	0	.	118959312	118959775	0	1	463	0
chr11	118960056	118962342	H1_polyA+.36658	0	.	118960056	118962342	0	1	2286	0
chr11	118960077	118961463	BT474_Burge_Thompson.10691	0	.	118960077	118961463	0	1	1386	0
chr11	118960223	118961178	ZR751_Thompson.7755	0	.	118960223	118961178	0	1	955	0
chr11	118960261	118961224	MDAMB468_Thompson.8124	0	.	118960261	118961224	0	1	963	0
chr11	118960293	118962418	B_Cells_Pritchard.1068487	0	.	118960293	118962418	0	1	2125	0
chr11	118960296	118961730	REMC_LuminalBreast.33392	0	.	118960296	118961730	0	1	1434	0
chr11	118960425	118961118	prostate_carcinoma.32188	0	.	118960425	118961118	0	1	693	0
chr11	118960429	118961219	BT20_Thompson.6898	0	.	118960429	118961219	0	1	790	0
chr11	118960459	118961267	prostate_normal.18724	0	.	118960459	118961267	0	1	808	0
chr11	118964809	118965685	H1_polyA+.36661	0	.	118964809	118965685	0	1	876	0
chr11	118983598	118994218	Rinn_00019778	0	-	118983598	118994218	0	2	7732,103	0,10517
chr11	118988077	118994159	HIT000020256	0	-	118988077	118994159	0	2	3253,43	0,6039
chr11	118992321	118993084	B_Cells_Pritchard.1068579	0	.	118992321	118993084	0	1	763	0
chr11	119115962	119119926	B_Cells_Pritchard.1069041	0	.	119115962	119119926	0	1	3964	0
chr11	119117430	119118383	prostate_carcinoma.32208	0	.	119117430	119118383	0	1	953	0
chr11	119117624	119118247	H1_polyA+.36764	0	.	119117624	119118247	0	1	623	0
chr11	119117634	119118093	T47D_Burge_Thompson.9248	0	.	119117634	119118093	0	1	459	0
chr11	119117740	119118210	BT474_Burge_Thompson.10693	0	.	119117740	119118210	0	1	470	0
chr11	119117818	119118226	H9_polyA+.14527	0	.	119117818	119118226	0	1	408	0
chr11	119117833	119118189	A549_Myers.25042	0	.	119117833	119118189	0	1	356	0
chr11	119118867	119119904	H1_polyA+.36765	0	.	119118867	119119904	0	1	1037	0
chr11	119119225	119119897	prostate_carcinoma.32210	0	.	119119225	119119897	0	1	672	0
chr11	119121036	119121795	B_Cells_Pritchard.1069049	0	.	119121036	119121795	0	1	759	0
chr11	119121331	119122626	prostate_carcinoma.32206	0	.	119121331	119122626	0	1	1295	0
chr11	119123238	119124186	H1_polyA+.36767	0	.	119123238	119124186	0	1	948	0
chr11	119126806	119142654	B_Cells_Pritchard.1069067	0	+	119126806	119142654	0	5	72,145,1227,1922,2697	0,1060,9562,11004,13151
chr11	119127190	119139732	B_Cells_Pritchard.1069069	0	-	119127190	119139732	0	3	5215,5072,999	0,5509,11543
chr11	119127758	119128942	H1_polyA+.36770	0	.	119127758	119128942	0	1	1184	0
chr11	119127955	119128844	prostate_carcinoma.32211	0	.	119127955	119128844	0	1	889	0
chr11	119139953	119147845	B_cells_Cheung.62133	0	.	119139953	119147845	0	1	7892	0
chr11	119142300	119143342	REMC_MyoepithelialBreast.31059	0	.	119142300	119143342	0	1	1042	0
chr11	119145037	119147836	B_Cells_Pritchard.1069081	0	.	119145037	119147836	0	1	2799	0
chr11	119147947	119163675	B_cells_Cheung.62132	0	-	119147947	119163675	0	2	256,6568	0,9160
chr11	119147947	119153161	B_cells_Cheung.62128	0	.	119147947	119153161	0	1	5214	0
chr11	119147974	119156644	B_Cells_Pritchard.1069083	0	.	119147974	119156644	0	1	8670	0
chr11	119153223	119156670	B_cells_Cheung.62134	0	.	119153223	119156670	0	1	3447	0
chr11	119156855	119157353	B_Cells_Pritchard.1069085	0	.	119156855	119157353	0	1	498	0
chr11	119157573	119161529	B_Cells_Pritchard.1069087	0	-	119157573	119161529	0	1	3956	0
chr11	119157801	119158274	H1_polyA+.36772	0	.	119157801	119158274	0	1	473	0
chr11	119161649	119163685	B_Cells_Pritchard.1069089	0	.	119161649	119163685	0	1	2036	0
chr11	119163915	119168225	B_Cells_Pritchard.1069091	0	.	119163915	119168225	0	1	4310	0
chr11	119168462	119194184	B_Cells_Pritchard.1069093	0	-	119168462	119194184	0	1	25722	0
chr11	119179634	119180038	A549_Myers.25045	0	.	119179634	119180038	0	1	404	0
chr11	119209163	119212508	B_Cells_Pritchard.1069113	0	.	119209163	119212508	0	1	3345	0
chr11	119212904	119214125	B_Cells_Pritchard.1069115	0	.	119212904	119214125	0	1	1221	0
chr11	119222898	119224389	B_cells_Cheung.62138	0	.	119222898	119224389	0	1	1491	0
chr11	119238848	119239246	B_cells_Cheung.62140	0	.	119238848	119239246	0	1	398	0
chr11	119251241	119252911	HIT000335014	0	+	119251241	119252911	0	1	1670	0
chr11	119272300	119273676	K562.14878	0	.	119272300	119273676	0	1	1376	0
chr11	119272667	119273349	MeI_Garraway.5753	0	.	119272667	119273349	0	1	682	0
chr11	119273248	119273785	B_cells_Cheung.62142	0	.	119273248	119273785	0	1	537	0
chr11	119322345	119327060	Rinn_00019502	0	+	119322345	119327060	0	2	107,470	0,4245
chr11	119363725	119370621	Rinn_00019779	0	-	119363725	119370621	0	2	998,110	0,6786
chr11	119389470	119390139	brain_AmbionMAQC.14108	0	.	119389470	119390139	0	1	669	0
chr11	119391722	119392278	brain_AmbionMAQC.14110	0	.	119391722	119392278	0	1	556	0
chr11	119408631	119409011	B_Cells_Pritchard.1069653	0	.	119408631	119409011	0	1	380	0
chr11	119414679	119417159	BT20_Thompson.6916	0	.	119414679	119417159	0	1	2480	0
chr11	119428620	119431988	BT20_Thompson.6921	0	.	119428620	119431988	0	1	3368	0
chr11	119432067	119433178	BT20_Thompson.6910	0	.	119432067	119433178	0	1	1111	0
chr11	119434204	119434810	H1_rRNA-depleted_UCSD_REMC.28345	0	.	119434204	119434810	0	1	606	0
chr11	119434216	119446237	H1_polyA+.36777	0	+	119434216	119446237	0	3	241,343,4654	0,1129,7367
chr11	119437904	119438583	REMC_MyoepithelialBreast.31065	0	.	119437904	119438583	0	1	679	0
chr11	119441904	119443455	BT20_Thompson.6912	0	.	119441904	119443455	0	1	1551	0
chr11	119443270	119444529	H9_polyA+.14537	0	.	119443270	119444529	0	1	1259	0
chr11	119443676	119444646	BT20_Thompson.6913	0	.	119443676	119444646	0	1	970	0
chr11	119444948	119445736	BT20_Thompson.6914	0	.	119444948	119445736	0	1	788	0
chr11	119446496	119452654	REMC_MyoepithelialBreast.31066	0	.	119446496	119452654	0	1	6158	0
chr11	119447760	119456522	REMC_LuminalBreast.33421	0	.	119447760	119456522	0	1	8762	0
chr11	119447760	119454409	REMC_LuminalBreast.33422	0	-	119447760	119454409	0	2	5956,8	0,6641
chr11	119452708	119467361	REMC_MyoepithelialBreast.31104	0	-	119452708	119467361	0	4	1008,2944,1368,532	0,1693,8921,14121
chr11	119461629	119464388	REMC_MyoepithelialBreast.31105	0	.	119461629	119464388	0	1	2759	0
chr11	119461735	119467876	REMC_LuminalBreast.33423	0	.	119461735	119467876	0	1	6141	0
chr11	119464560	119466722	REMC_MyoepithelialBreast.31107	0	.	119464560	119466722	0	1	2162	0
chr11	119470638	119471969	REMC_LuminalBreast.33426	0	.	119470638	119471969	0	1	1331	0
chr11	119470732	119471773	REMC_MyoepithelialBreast.31108	0	.	119470732	119471773	0	1	1041	0
chr11	119472072	119472954	REMC_LuminalBreast.33427	0	.	119472072	119472954	0	1	882	0
chr11	119480472	119482213	REMC_MyoepithelialBreast.31112	0	.	119480472	119482213	0	1	1741	0
chr11	119607278	119608031	REMC_MyoepithelialBreast.31096	0	.	119607278	119608031	0	1	753	0
chr11	119607813	119608465	prostate_carcinoma.32219	0	.	119607813	119608465	0	1	652	0
chr11	119608095	119611485	REMC_MyoepithelialBreast.31097	0	.	119608095	119611485	0	1	3390	0
chr11	119609172	119609883	prostate_carcinoma.32220	0	.	119609172	119609883	0	1	711	0
chr11	119868144	119876406	REMC_LuminalBreast.33494	0	.	119868144	119876406	0	1	8262	0
chr11	119873449	119875960	REMC_MyoepithelialBreast.31123	0	.	119873449	119875960	0	1	2511	0
chr11	120621144	120624841	prostate_normal.18790	0	-	120621144	120624841	0	2	3105,446	0,3251
chr11	120624224	120624689	B_cells_Cheung.62428	0	.	120624224	120624689	0	1	465	0
chr11	120696463	120697182	B_cells_Cheung.62439	0	.	120696463	120697182	0	1	719	0
chr11	120697714	120698164	B_cells_Cheung.62440	0	.	120697714	120698164	0	1	450	0
chr11	120709349	120709955	B_Cells_Pritchard.1073743	0	.	120709349	120709955	0	1	606	0
chr11	120712791	120713198	B_cells_Cheung.62448	0	.	120712791	120713198	0	1	407	0
chr11	120747244	120749438	B_cells_Cheung.62460	0	.	120747244	120749438	0	1	2194	0
chr11	120767434	120767922	B_Cells_Pritchard.1073983	0	.	120767434	120767922	0	1	488	0
chr11	120769629	120770121	B_Cells_Pritchard.1073995	0	.	120769629	120770121	0	1	492	0
chr11	120772688	120773270	B_Cells_Pritchard.1074009	0	.	120772688	120773270	0	1	582	0
chr11	120787993	120789643	B_Cells_Pritchard.1074075	0	.	120787993	120789643	0	1	1650	0
chr11	120788997	120789666	B_cells_Cheung.62473	0	.	120788997	120789666	0	1	669	0
chr11	120792935	120795607	B_cells_Cheung.62477	0	.	120792935	120795607	0	1	2672	0
chr11	120794454	120808776	B_Cells_Pritchard.1074089	0	+	120794454	120808776	0	2	1138,6361	0,7961
chr11	120795825	120803592	B_cells_Cheung.62478	0	.	120795825	120803592	0	1	7767	0
chr11	120799016	120801512	HepG2_Caltech_ENCODE.11573	0	.	120799016	120801512	0	1	2496	0
chr11	120799659	120800430	CD4_Plagnol_activated.20604	0	.	120799659	120800430	0	1	771	0
chr11	120802359	120803510	CD4_Plagnol_activated.20605	0	.	120802359	120803510	0	1	1151	0
chr11	120802401	120803409	CD4_Plagnol_resting.20078	0	.	120802401	120803409	0	1	1008	0
chr11	120802698	120821421	pHIT000111089	0	-	120802698	120821421	0	2	203,211	0,18512
chr11	120803704	120808481	B_cells_Cheung.62479	0	.	120803704	120808481	0	1	4777	0
chr11	120803733	120821295	CD4_Plagnol_resting.20076	0	+	120803733	120821295	0	2	1567,14	0,17548
chr11	120804161	120805065	CD4_Plagnol_activated.20606	0	.	120804161	120805065	0	1	904	0
chr11	120806835	120807358	CD4_Plagnol_resting.20080	0	.	120806835	120807358	0	1	523	0
chr11	120817320	120818567	B_cells_Cheung.63876	0	.	120817320	120818567	0	1	1247	0
chr11	120817326	120818397	B_Cells_Pritchard.1074105	0	.	120817326	120818397	0	1	1071	0
chr11	120818869	120822401	CD4_Plagnol_resting.20077	0	.	120818869	120822401	0	2	1826,1355	0,2177
chr11	120818877	120822405	prostate_carcinoma.32307	0	.	120818877	120822405	0	1	3528	0
chr11	120818921	120822421	HepG2_Caltech_ENCODE.11583	0	.	120818921	120822421	0	1	3500	0
chr11	120819401	120821514	MIP101.22014	0	.	120819401	120821514	0	1	2113	0
chr11	120820169	120822869	prostate_carcinoma.32308	0	+	120820169	120822869	0	2	1503,196	0,2504
chr11	120821034	120821908	H1_polyA+.36918	0	.	120821034	120821908	0	1	874	0
chr11	121023640	121057334	pHIT000020874	0	+	121023640	121057334	0	6	3,178,95,78,141,96	0,4235,9894,13049,25948,33598
chr11	121024257	121024997	B_cells_Cheung.62528	0	.	121024257	121024997	0	1	740	0
chr11	121025493	121026507	CD4_Plagnol_resting.19764	0	.	121025493	121026507	0	1	1014	0
chr11	121025846	121026563	B_Cells_Pritchard.1074505	0	.	121025846	121026563	0	1	717	0
chr11	121031341	121031888	B_Cells_Pritchard.1074531	0	.	121031341	121031888	0	1	547	0
chr11	121037090	121037573	B_cells_Cheung.62531	0	.	121037090	121037573	0	1	483	0
chr11	121081833	121089866	pHIT000020875	0	-	121081833	121089866	0	3	149,98,80	0,2336,7953
chr11	121187910	121188579	REMC_BreastStem.17103	0	.	121187910	121188579	0	1	669	0
chr11	121404243	121440204	Rinn_00019783	0	-	121404243	121440204	0	2	520,108	0,35853
chr11	121421119	121423761	REMC_MyoepithelialBreast.31453	0	.	121421119	121423761	0	1	2642	0
chr11	121432577	121452577	khalil_417	0	.	121432577	121452577	0	4	509,491,89,217	0,9363,19063,19783
chr11	121440421	121441221	REMC_MyoepithelialBreast.31456	0	.	121440421	121441221	0	1	800	0
chr11	121441832	121442571	prostate_carcinoma.32335	0	.	121441832	121442571	0	1	739	0
chr11	121476053	121476591	IMR90_UCSD_REMC.16021	0	+	121476053	121476591	0	1	538	0
chr11	121476279	121477035	melanoma_Garraway_short_term_cultures.21505	0	.	121476279	121477035	0	1	756	0
chr11	121476595	121477604	ENST00000530072	0	-	121476595	121477604	0	2	352,240	0,769
chr11	121479339	121481427	HIT000020525	0	-	121479339	121481427	0	1	2088	0
chr11	121501418	121502375	REMC_BreastStem.17173	0	.	121501418	121502375	0	1	957	0
chr11	121534222	121534734	IMR90_UCSD_REMC.16046	0	+	121534222	121534734	0	1	512	0
chr11	121536361	121536863	IMR90_UCSD_REMC.16047	0	+	121536361	121536863	0	1	502	0
chr11	121536398	121537499	melanoma_Garraway_short_term_cultures.21511	0	.	121536398	121537499	0	1	1101	0
chr11	121591944	121593067	prostate_carcinoma.32342	0	.	121591944	121593067	0	1	1123	0
chr11	121592532	121593132	liver_polyA+.44029	0	.	121592532	121593132	0	1	600	0
chr11	121592532	121593131	kidney_Gilad.28553	0	.	121592532	121593131	0	1	599	0
chr11	121595597	121595960	liver_polyA+.44031	0	.	121595597	121595960	0	1	363	0
chr11	121627918	121628586	HeLa_polyA-_Chen.6207	0	.	121627918	121628586	0	1	668	0
chr11	121639892	121641297	H1_polyA+.36879	0	.	121639892	121641297	0	1	1405	0
chr11	121709067	121709395	kidney_Raymond.35244	0	.	121709067	121709395	0	1	328	0
chr11	121741132	121741803	HeLa_polyA-_Chen.6212	0	.	121741132	121741803	0	1	671	0
chr11	121786410	121787297	HeLa_polyA-_Chen.6216	0	.	121786410	121787297	0	1	887	0
chr11	121925462	121926187	H1_polyA+.36881	0	.	121925462	121926187	0	1	725	0
chr11	121956379	121957292	REMC_MyoepithelialBreast.31164	0	.	121956379	121957292	0	1	913	0
chr11	122018658	122019375	REMC_MyoepithelialBreast.31166	0	.	122018658	122019375	0	1	717	0
chr11	122573078	122573947	REMC_MyoepithelialBreast.31230	0	.	122573078	122573947	0	1	869	0
chr11	122679967	122680585	B_cells_Cheung.62687	0	.	122679967	122680585	0	1	618	0
chr11	122685568	122686102	B_Cells_Pritchard.1079013	0	.	122685568	122686102	0	1	534	0
chr11	122734231	122735164	B_Cells_Pritchard.1079151	0	.	122734231	122735164	0	1	933	0
chr11	122734387	122734708	A549_Myers.25152	0	.	122734387	122734708	0	1	321	0
chr11	122738718	122739213	B_Cells_Pritchard.1079177	0	-	122738718	122739213	0	1	495	0
chr11	122755992	122763792	B_cells_Cheung.62699	0	.	122755992	122763792	0	1	7800	0
chr11	122763973	122772224	B_cells_Cheung.62700	0	.	122763973	122772224	0	1	8251	0
chr11	122780387	122781894	B_Cells_Pritchard.1079339	0	.	122780387	122781894	0	1	1507	0
chr11	122782444	122786958	B_cells_Cheung.62705	0	.	122782444	122786958	0	1	4514	0
chr11	122785190	122786902	B_Cells_Pritchard.1079353	0	.	122785190	122786902	0	1	1712	0
chr11	122789013	122789883	B_Cells_Pritchard.1079361	0	.	122789013	122789883	0	1	870	0
chr11	122793255	122804803	B_Cells_Pritchard.1079373	0	-	122793255	122804803	0	2	339,4514	0,7034
chr11	122797904	122799362	H1_polyA+.36948	0	.	122797904	122799362	0	1	1458	0
chr11	122801142	122802836	HeLa_polyA+_Chen.11748	0	.	122801142	122802836	0	1	1694	0
chr11	123002358	123003633	REMC_BreastStem.17179	0	.	123002358	123003633	0	1	1275	0
chr11	123002904	123003605	liver_polyA+.44108	0	.	123002904	123003605	0	1	701	0
chr11	123003155	123003598	adipose_Burge.12450	0	.	123003155	123003598	0	1	443	0
chr11	123047824	123050425	Rinn_00019512	0	+	123047824	123050425	0	2	219,129	0,2472
chr11	123048542	123049165	B_cells_Cheung.62752	0	.	123048542	123049165	0	1	623	0
chr11	123121714	123122829	H1_polyA+.36992	0	.	123121714	123122829	0	1	1115	0
chr11	123124156	123127594	H1_polyA+.36994	0	-	123124156	123127594	0	2	1982,474	0,2964
chr11	123124156	123126298	H1_polyA+.36993	0	.	123124156	123126298	0	1	2142	0
chr11	124073017	124073386	prostate_normal.18872	0	.	124073017	124073386	0	1	369	0
chr11	124093254	124093749	BT474_Burge_Thompson.10796	0	.	124093254	124093749	0	1	495	0
chr11	124093392	124093705	B_Cells_Pritchard.1082441	0	.	124093392	124093705	0	1	313	0
chr11	124177746	124178820	B_Cells_Pritchard.1082735	0	-	124177746	124178820	0	1	1074	0
chr11	124178047	124178781	prostate_normal.18894	0	.	124178047	124178781	0	1	734	0
chr11	124179218	124180055	H1_polyA+.37025	0	.	124179218	124180055	0	1	837	0
chr11	124274348	124275104	REMC_MyoepithelialBreast.31290	0	.	124274348	124275104	0	1	756	0
chr11	124323426	124324051	REMC_MyoepithelialBreast.31294	0	.	124323426	124324051	0	1	625	0
chr11	124324262	124325667	REMC_LuminalBreast.33648	0	.	124324262	124325667	0	1	1405	0
chr11	124324437	124325670	REMC_MyoepithelialBreast.31295	0	.	124324437	124325670	0	1	1233	0
chr11	124325834	124326701	B_cells_Cheung.62816	0	.	124325834	124326701	0	1	867	0
chr11	124421387	124423795	K562.15013	0	.	124421387	124423795	0	1	2408	0
chr11	124421429	124425644	H1_polyA+.37035	0	.	124421429	124425644	0	1	4215	0
chr11	124421445	124432539	MIP101.22165	0	+	124421445	124432539	0	2	3407,54	0,11040
chr11	124421445	124425528	MIP101.22164	0	.	124421445	124425528	0	1	4083	0
chr11	124421476	124423961	B_Cells_Pritchard.1083189	0	.	124421476	124423961	0	1	2485	0
chr11	124421510	124423826	melanoma_Garraway_short_term_cultures.21659	0	.	124421510	124423826	0	1	2316	0
chr11	124422070	124423973	B_cells_Cheung.62840	0	.	124422070	124423973	0	1	1903	0
chr11	124422445	124423789	prostate_carcinoma.32470	0	.	124422445	124423789	0	1	1344	0
chr11	124422943	124423490	HepG2_Caltech_ENCODE.11663	0	.	124422943	124423490	0	1	547	0
chr11	124428982	124430458	B_cells_Cheung.62843	0	.	124428982	124430458	0	1	1476	0
chr11	124429034	124430331	B_Cells_Pritchard.1084573	0	-	124429034	124430331	0	1	1297	0
chr11	124431304	124431818	HepG2_Caltech_ENCODE.11666	0	.	124431304	124431818	0	1	514	0
chr11	124436064	124436793	B_Cells_Pritchard.1084603	0	-	124436064	124436793	0	1	729	0
chr11	124436297	124437174	prostate_carcinoma.32473	0	.	124436297	124437174	0	1	877	0
chr11	124487089	124489049	H1_polyA+.37048	0	.	124487089	124489049	0	1	1960	0
chr11	124488624	124489053	B_cells_Cheung.62863	0	.	124488624	124489053	0	1	429	0
chr11	124489611	124489971	pHIT000020928	0	+	124489611	124489971	0	1	360	0
chr11	124530520	124531586	H1_polyA+.37050	0	.	124530520	124531586	0	1	1066	0
chr11	124810080	124810816	brain_AmbionMAQC.14334	0	.	124810080	124810816	0	1	736	0
chr11	124810099	124811729	REMC_MyoepithelialBreast.31323	0	.	124810099	124811729	0	1	1630	0
chr11	124810339	124811704	prostate_carcinoma.32514	0	.	124810339	124811704	0	1	1365	0
chr11	124810348	124811730	melanoma_Garraway_short_term_cultures.21711	0	.	124810348	124811730	0	1	1382	0
chr11	124811941	124814396	REMC_MyoepithelialBreast.31324	0	.	124811941	124814396	0	1	2455	0
chr11	124812362	124814424	melanoma_Garraway_short_term_cultures.21713	0	.	124812362	124814424	0	1	2062	0
chr11	124815335	124817812	melanoma_Garraway_short_term_cultures.21715	0	.	124815335	124817812	0	1	2477	0
chr11	124815629	124817816	HIT000011895	0	-	124815629	124817816	0	1	2187	0
chr11	124815935	124818003	H1_polyA+.37072	0	.	124815935	124818003	0	1	2068	0
chr11	124817233	124817840	B_Cells_Pritchard.1084269	0	.	124817233	124817840	0	1	607	0
chr11	124817260	124817834	B_cells_Cheung.62865	0	.	124817260	124817834	0	1	574	0
chr11	125062977	125066709	H1_polyA+.37377	0	.	125062977	125066709	0	1	3732	0
chr11	125063785	125065177	MIP101.22193	0	.	125063785	125065177	0	1	1392	0
chr11	125064478	125066141	prostate_carcinoma.32534	0	.	125064478	125066141	0	1	1663	0
chr11	125064497	125065082	B_cells_Cheung.62920	0	.	125064497	125065082	0	1	585	0
chr11	125064635	125065095	B_Cells_Pritchard.1084681	0	.	125064635	125065095	0	1	460	0
chr11	125070829	125071259	B_Cells_Pritchard.1084701	0	.	125070829	125071259	0	1	430	0
chr11	125072043	125074660	H1_polyA+.37380	0	.	125072043	125074660	0	1	2617	0
chr11	125072446	125074777	B_cells_Cheung.62925	0	+	125072446	125074777	0	2	1418,772	0,1559
chr11	125072446	125074777	B_cells_Cheung.62926	0	.	125072446	125074777	0	1	2331	0
chr11	125072448	125074593	B_Cells_Pritchard.1084705	0	.	125072448	125074593	0	1	2145	0
chr11	125072571	125073144	H9_polyA+.14703	0	.	125072571	125073144	0	1	573	0
chr11	125073464	125074601	REMC_MyoepithelialBreast.31355	0	.	125073464	125074601	0	1	1137	0
chr11	125073648	125074126	H9_polyA+.14704	0	.	125073648	125074126	0	1	478	0
chr11	125074787	125075491	B_Cells_Pritchard.1084707	0	.	125074787	125075491	0	1	704	0
chr11	125074961	125075465	B_cells_Cheung.62927	0	.	125074961	125075465	0	1	504	0
chr11	125075137	125076004	MIP101.22196	0	.	125075137	125076004	0	1	867	0
chr11	125170743	125171522	B_cells_Cheung.62935	0	.	125170743	125171522	0	1	779	0
chr11	125177655	125179193	B_cells_Cheung.62943	0	.	125177655	125179193	0	1	1538	0
chr11	125188659	125190221	B_cells_Cheung.62948	0	.	125188659	125190221	0	1	1562	0
chr11	125201611	125202179	B_cells_Cheung.62953	0	.	125201611	125202179	0	1	568	0
chr11	125202248	125203088	B_cells_Cheung.62954	0	.	125202248	125203088	0	1	840	0
chr11	125215487	125216581	B_Cells_Pritchard.1085125	0	-	125215487	125216581	0	2	303,146	0,948
chr11	125219185	125220105	B_cells_Cheung.62964	0	.	125219185	125220105	0	1	920	0
chr11	125219624	125220345	prostate_carcinoma.32540	0	.	125219624	125220345	0	1	721	0
chr11	125228055	125229450	B_cells_Cheung.62969	0	.	125228055	125229450	0	1	1395	0
chr11	125242200	125242846	B_cells_Cheung.62972	0	.	125242200	125242846	0	1	646	0
chr11	125469364	125470121	REMC_LuminalBreast.33690	0	.	125469364	125470121	0	1	757	0
chr11	125471419	125472118	REMC_LuminalBreast.33691	0	.	125471419	125472118	0	1	699	0
chr11	125475593	125477518	HIT000009996	0	-	125475593	125477518	0	1	1925	0
chr11	125478032	125481265	REMC_LuminalBreast.33693	0	.	125478032	125481265	0	1	3233	0
chr11	125478449	125481288	prostate_carcinoma.32572	0	.	125478449	125481288	0	1	2839	0
chr11	125499410	125503295	REMC_BreastStem.17267	0	-	125499410	125503295	0	2	516,195	0,3690
chr11	125511880	125515572	HepG2_Caltech_ENCODE.11697	0	.	125511880	125515572	0	1	3692	0
chr11	125513168	125514055	REMC_BreastStem.17269	0	.	125513168	125514055	0	1	887	0
chr11	125521454	125522192	HepG2_Caltech_ENCODE.11698	0	.	125521454	125522192	0	1	738	0
chr11	125532797	125533989	HepG2_Caltech_ENCODE.11699	0	.	125532797	125533989	0	1	1192	0
chr11	125533758	125534818	REMC_MyoepithelialBreast.31373	0	.	125533758	125534818	0	1	1060	0
chr11	125551825	125554329	H1_polyA+.37149	0	.	125551825	125554329	0	1	2504	0
chr11	125551893	125552988	B_Cells_Pritchard.1086137	0	.	125551893	125552988	0	1	1095	0
chr11	125551911	125553171	MIP101.22546	0	.	125551911	125553171	0	1	1260	0
chr11	125551912	125553525	prostate_carcinoma.32744	0	.	125551912	125553525	0	1	1613	0
chr11	125555716	125561862	REMC_MyoepithelialBreast.31381	0	.	125555716	125561862	0	1	6146	0
chr11	125556130	125557653	B_cells_Cheung.63038	0	.	125556130	125557653	0	1	1523	0
chr11	125556503	125563071	B_Cells_Pritchard.1086153	0	-	125556503	125563071	0	2	1322,4089	0,2479
chr11	125556885	125558411	MIP101.22552	0	.	125556885	125558411	0	1	1526	0
chr11	125556929	125557574	prostate_carcinoma.32746	0	.	125556929	125557574	0	1	645	0
chr11	125556965	125557415	prostate_normal.18972	0	.	125556965	125557415	0	1	450	0
chr11	125557092	125557635	H9_polyA+.14724	0	.	125557092	125557635	0	1	543	0
chr11	125557401	125568754	REMC_BreastStem.17275	0	-	125557401	125568754	0	2	791,1333	0,10020
chr11	125558641	125562310	B_cells_Cheung.63040	0	.	125558641	125562310	0	1	3669	0
chr11	125560440	125562675	prostate_carcinoma.32742	0	.	125560440	125562675	0	1	2235	0
chr11	125560704	125562946	MIP101.22553	0	.	125560704	125562946	0	1	2242	0
chr11	125560817	125569805	khalil_422	0	.	125560817	125569805	0	8	896,496,430,155,245,83,201,231	0,1188,2050,2736,4146,6883,7263,8757
chr11	125561507	125562353	HepG2_Caltech_ENCODE.11708	0	.	125561507	125562353	0	1	846	0
chr11	125561756	125562861	REMC_BreastStem.17279	0	.	125561756	125562861	0	1	1105	0
chr11	125561978	125574387	REMC_MyoepithelialBreast.31501	0	.	125561978	125574387	0	1	12409	0
chr11	125562005	125562643	H9_polyA+.14725	0	.	125562005	125562643	0	1	638	0
chr11	125562207	125562662	H1_rRNA-depleted_UCSD_REMC.28684	0	.	125562207	125562662	0	1	455	0
chr11	125562387	125562968	B_cells_Cheung.63041	0	.	125562387	125562968	0	1	581	0
chr11	125563041	125566231	REMC_BreastStem.17280	0	.	125563041	125566231	0	1	3190	0
chr11	125563170	125566612	H1_polyA+.37152	0	.	125563170	125566612	0	1	3442	0
chr11	125563187	125565038	B_Cells_Pritchard.1086159	0	.	125563187	125565038	0	1	1851	0
chr11	125564077	125564638	H9_polyA+.14726	0	.	125564077	125564638	0	1	561	0
chr11	125565387	125566240	prostate_carcinoma.32749	0	.	125565387	125566240	0	1	853	0
chr11	125565391	125565794	B_cells_Cheung.63044	0	.	125565391	125565794	0	1	403	0
chr11	125565512	125566428	B_Cells_Pritchard.1086163	0	.	125565512	125566428	0	1	916	0
chr11	125566662	125571630	H1_polyA+.37273	0	.	125566662	125571630	0	1	4968	0
chr11	125566720	125568754	REMC_BreastStem.17277	0	.	125566720	125568754	0	1	2034	0
chr11	125567703	125568731	B_cells_Cheung.63046	0	.	125567703	125568731	0	1	1028	0
chr11	125567758	125568756	B_Cells_Pritchard.1086173	0	.	125567758	125568756	0	1	998	0
chr11	125570140	125571588	REMC_BreastStem.17282	0	.	125570140	125571588	0	1	1448	0
chr11	125570674	125571618	B_Cells_Pritchard.1086181	0	.	125570674	125571618	0	1	944	0
chr11	125570984	125571585	MIP101.22555	0	.	125570984	125571585	0	1	601	0
chr11	125571098	125571629	H9_polyA+.14727	0	.	125571098	125571629	0	1	531	0
chr11	125571740	125574399	H1_polyA+.37274	0	.	125571740	125574399	0	1	2659	0
chr11	125571813	125573980	B_Cells_Pritchard.1086183	0	.	125571813	125573980	0	1	2167	0
chr11	125571889	125574121	REMC_BreastStem.17420	0	.	125571889	125574121	0	1	2232	0
chr11	125572747	125574031	B_cells_Cheung.63051	0	.	125572747	125574031	0	1	1284	0
chr11	125572861	125574097	prostate_carcinoma.32752	0	.	125572861	125574097	0	1	1236	0
chr11	125574534	125575022	B_cells_Cheung.63053	0	.	125574534	125575022	0	1	488	0
chr11	125574566	125575537	MIP101.22543	0	.	125574566	125575537	0	1	971	0
chr11	125574566	125575011	B_Cells_Pritchard.1086187	0	.	125574566	125575011	0	1	445	0
chr11	125654743	125655673	REMC_MyoepithelialBreast.31630	0	.	125654743	125655673	0	1	930	0
chr11	125725276	125730692	ENST00000499602	0	-	125725276	125730692	0	3	1606,537,146	0,4207,5270
chr11	125725276	125730692	HIT000021225	0	-	125725276	125730692	0	3	1600,543,146	0,4201,5270
chr11	125725328	125726120	REMC_MyoepithelialBreast.31413	0	.	125725328	125726120	0	1	792	0
chr11	125726914	125729265	melanoma_Garraway_short_term_cultures.21783	0	.	125726914	125729265	0	1	2351	0
chr11	125726965	125729282	H1_polyA+.37347	0	.	125726965	125729282	0	1	2317	0
chr11	125726968	125729272	HeLa_polyA+_Chen.11966	0	.	125726968	125729272	0	1	2304	0
chr11	125726987	125727786	brain_AmbionMAQC.14322	0	.	125726987	125727786	0	1	799	0
chr11	125726988	125729218	MeWo_Garraway.11626	0	.	125726988	125729218	0	1	2230	0
chr11	125726992	125729273	B_Cells_Pritchard.1086415	0	.	125726992	125729273	0	1	2281	0
chr11	125727013	125728083	HepG2_Caltech_ENCODE.11734	0	.	125727013	125728083	0	1	1070	0
chr11	125727016	125728158	CD4_Plagnol_resting.19950	0	.	125727016	125728158	0	1	1142	0
chr11	125727109	125729305	REMC_BreastStem.17530	0	.	125727109	125729305	0	1	2196	0
chr11	125728017	125729255	K562.15094	0	.	125728017	125729255	0	1	1238	0
chr11	125728272	125728836	CD4_Plagnol_resting.19951	0	.	125728272	125728836	0	1	564	0
chr11	125728298	125729246	HepG2_Caltech_ENCODE.11735	0	.	125728298	125729246	0	1	948	0
chr11	127341491	127412602	pHIT000111161	0	-	127341491	127412602	0	3	77,162,310	0,63180,70801
chr11	127984008	127984693	B_Cells_Pritchard.1091559	0	.	127984008	127984693	0	1	685	0
chr11	127990969	127996911	ENST00000531784	0	-	127990969	127996911	0	3	986,71,102	0,4839,5840
chr11	128190114	128190551	B_Cells_Pritchard.1091797	0	+	128190114	128190551	0	1	437	0
chr11	128194442	128195050	B_Cells_Pritchard.1091833	0	+	128194442	128195050	0	1	608	0
chr11	128197079	128199214	H1_polyA+.37213	0	.	128197079	128199214	0	1	2135	0
chr11	128198481	128198936	CD4_Plagnol_activated.20682	0	.	128198481	128198936	0	1	455	0
chr11	128202669	128203246	B_Cells_Pritchard.1091881	0	.	128202669	128203246	0	1	577	0
chr11	128244750	128246234	prostate_carcinoma.32649	0	.	128244750	128246234	0	1	1484	0
chr11	128246357	128247708	prostate_carcinoma.32650	0	.	128246357	128247708	0	1	1351	0
chr11	128252974	128253991	prostate_carcinoma.32655	0	.	128252974	128253991	0	1	1017	0
chr11	128294415	128296300	HIT000056190	0	+	128294415	128296300	0	1	1885	0
chr11	128294916	128296677	MIP101.22270	0	.	128294916	128296677	0	1	1761	0
chr11	128294925	128296267	prostate_normal.19048	0	.	128294925	128296267	0	1	1342	0
chr11	128295866	128297167	REMC_LuminalBreast.33756	0	.	128295866	128297167	0	1	1301	0
chr11	128298570	128299626	REMC_LuminalBreast.33757	0	.	128298570	128299626	0	1	1056	0
chr11	128319653	128321283	MIP101.22274	0	.	128319653	128321283	0	1	1630	0
chr11	128325093	128330461	MIP101.22277	0	.	128325093	128330461	0	1	5368	0
chr11	128326470	128331445	REMC_MyoepithelialBreast.31499	0	.	128326470	128331445	0	1	4975	0
chr11	128655019	128655569	MIP101.22314	0	.	128655019	128655569	0	1	550	0
chr11	128655020	128655987	REMC_LuminalBreast.33760	0	.	128655020	128655987	0	1	967	0
chr11	128838292	128842331	REMC_LuminalBreast.33792	0	.	128838292	128842331	0	1	4039	0
chr11	128842387	128846507	REMC_LuminalBreast.33793	0	.	128842387	128846507	0	1	4120	0
chr11	128847976	128848397	REMC_LuminalBreast.33795	0	.	128847976	128848397	0	1	421	0
chr11	128877617	128878743	REMC_LuminalBreast.33805	0	.	128877617	128878743	0	1	1126	0
chr11	128964900	128965413	HepG2_Caltech_ENCODE.11759	0	.	128964900	128965413	0	1	513	0
chr11	128986709	128987998	BT20_Thompson.7027	0	.	128986709	128987998	0	1	1289	0
chr11	129069722	129073350	HIT000016004	0	+	129069722	129073350	0	1	3628	0
chr11	129070314	129070884	pHIT000111174	0	+	129070314	129070884	0	2	195,115	0,455
chr11	129070314	129073821	pHIT000111173	0	+	129070314	129073821	0	3	195,115,173	0,455,3334
chr11	129086372	129086942	HepG2_Caltech_ENCODE.11764	0	.	129086372	129086942	0	1	570	0
chr11	129107800	129109501	HepG2_Caltech_ENCODE.11766	0	.	129107800	129109501	0	1	1701	0
chr11	129118664	129119419	HepG2_Caltech_ENCODE.11767	0	.	129118664	129119419	0	1	755	0
chr11	129159301	129160913	HepG2_Caltech_ENCODE.11770	0	.	129159301	129160913	0	1	1612	0
chr11	129168784	129171085	HepG2_Caltech_ENCODE.11772	0	.	129168784	129171085	0	1	2301	0
chr11	129237258	129237833	H9_polyA+.14769	0	.	129237258	129237833	0	1	575	0
chr11	129378042	129379808	HIT000501247	0	+	129378042	129379808	0	2	1396,224	0,1542
chr11	129378042	129379461	ENST00000530583	0	+	129378042	129379461	0	1	1419	0
chr11	129380888	129381576	REMC_LuminalBreast.33850	0	.	129380888	129381576	0	1	688	0
chr11	129381005	129382367	B_Cells_Pritchard.1094949	0	-	129381005	129382367	0	1	1362	0
chr11	129381420	129382366	B_cells_Cheung.63212	0	.	129381420	129382366	0	1	946	0
chr11	129381683	129382644	REMC_LuminalBreast.33851	0	.	129381683	129382644	0	1	961	0
chr11	129382697	129383620	REMC_MyoepithelialBreast.31614	0	.	129382697	129383620	0	1	923	0
chr11	129525611	129526133	B_Cells_Pritchard.1095259	0	.	129525611	129526133	0	1	522	0
chr11	129529684	129532251	REMC_LuminalBreast.33856	0	.	129529684	129532251	0	1	2567	0
chr11	129529699	129531834	REMC_MyoepithelialBreast.31773	0	.	129529699	129531834	0	1	2135	0
chr11	129588363	129597376	pHIT000083775	0	+	129588363	129597376	0	2	326,268	0,8745
chr11	129588654	129589325	A549_Myers.25439	0	+	129588654	129589325	0	2	215,276	0,395
chr11	129590617	129591736	MIP101.22493	0	.	129590617	129591736	0	1	1119	0
chr11	129597521	129597934	H1_rRNA-depleted_UCSD_REMC.28856	0	.	129597521	129597934	0	1	413	0
chr11	129690118	129701943	prostate_carcinoma.32837	0	+	129690118	129701943	0	3	434,171,352	0,8877,11473
chr11	129699049	129701961	REMC_LuminalBreast.33892	0	+	129699049	129701961	0	2	117,370	0,2542
chr11	129820248	129821247	H1_polyA+.37387	0	+	129820248	129821247	0	2	117,420	0,579
chr11	129854232	129855394	REMC_BreastStem.17397	0	.	129854232	129855394	0	1	1162	0
chr11	129856920	129904404	pHIT000084801	0	+	129856920	129904404	0	6	8,50,56,104,163,65	0,33443,43146,45467,46033,47419
chr11	130146521	130148933	REMC_BreastStem.17399	0	.	130146521	130148933	0	1	2412	0
chr11	130212015	130212991	REMC_BreastStem.17401	0	.	130212015	130212991	0	1	976	0
chr11	130243267	130243775	skeletal_muscle_Burge.9826	0	.	130243267	130243775	0	1	508	0
chr11	130243271	130244738	H9_polyA+.14788	0	.	130243271	130244738	0	1	1467	0
chr11	130247715	130248312	HeLa_polyA+_Chen.11927	0	.	130247715	130248312	0	1	597	0
chr11	130247781	130248250	HME_Burge.13642	0	.	130247781	130248250	0	1	469	0
chr11	130247840	130248321	NEC_from_H9.24462	0	.	130247840	130248321	0	1	481	0
chr11	130323990	130325187	REMC_MyoepithelialBreast.31653	0	.	130323990	130325187	0	1	1197	0
chr11	130469104	130470304	B_cells_Cheung.63290	0	.	130469104	130470304	0	1	1200	0
chr11	130469104	130473525	B_cells_Cheung.63289	0	-	130469104	130473525	0	2	750,76	0,4345
chr11	130550639	130564830	B_cells_Cheung.63296	0	+	130550639	130564830	0	2	11593,501	0,13690
chr11	130555008	130555449	B_Cells_Pritchard.1098113	0	.	130555008	130555449	0	1	441	0
chr11	130558735	130564449	B_Cells_Pritchard.1098191	0	+	130558735	130564449	0	3	2875,499,120	0,2998,5594
chr11	130567740	130569457	Rinn_00019542	0	+	130567740	130569457	0	2	166,199	0,1518
chr11	130572400	130575185	B_cells_Cheung.63298	0	.	130572400	130575185	0	1	2785	0
chr11	130572637	130573534	B_Cells_Pritchard.1098133	0	.	130572637	130573534	0	1	897	0
chr11	130578025	130578951	B_cells_Cheung.63300	0	.	130578025	130578951	0	1	926	0
chr11	130579026	130580098	B_cells_Cheung.63301	0	.	130579026	130580098	0	1	1072	0
chr11	130580497	130580836	B_cells_Cheung.63302	0	.	130580497	130580836	0	1	339	0
chr11	130583581	130584079	B_Cells_Pritchard.1098185	0	.	130583581	130584079	0	1	498	0
chr11	130597248	130597573	B_cells_Cheung.63308	0	.	130597248	130597573	0	1	325	0
chr11	130628383	130677847	H1_polyA+.37406	0	+	130628383	130677847	0	2	313,2385	0,47079
chr11	130628489	130678556	H9_polyA+.14816	0	+	130628489	130678556	0	3	207,86,3094	0,38208,46973
chr11	130628525	130675876	Rinn_00019161	0	+	130628525	130675876	0	2	171,415	0,46936
chr11	130628526	130675876	ENST00000416553	0	+	130628526	130675876	0	2	170,414	0,46936
chr11	130631299	130631623	H1_rRNA-depleted_UCSD_REMC.29054	0	.	130631299	130631623	0	1	324	0
chr11	130633882	130634504	H1_rRNA-depleted_UCSD_REMC.29057	0	.	130633882	130634504	0	1	622	0
chr11	130635831	130637334	H9_polyA+.14818	0	.	130635831	130637334	0	1	1503	0
chr11	130639109	130640029	H9_polyA+.14824	0	.	130639109	130640029	0	1	920	0
chr11	130647047	130649661	H9_polyA+.14825	0	.	130647047	130649661	0	1	2614	0
chr11	130658177	130659635	H9_polyA+.14833	0	.	130658177	130659635	0	1	1458	0
chr11	130666697	130717795	pHIT000111192	0	+	130666697	130717795	0	2	86,532	0,50566
chr11	130666739	130675927	H1_rRNA-depleted_UCSD_REMC.29072	0	+	130666739	130675927	0	2	44,465	0,8723
chr11	130667581	130668383	H9_polyA+.14836	0	.	130667581	130668383	0	1	802	0
chr11	130670748	130678556	H9_polyA+.14817	0	.	130670748	130678556	0	1	7808	0
chr11	130674916	130675292	H1_rRNA-depleted_UCSD_REMC.29074	0	.	130674916	130675292	0	1	376	0
chr11	130675452	130675920	NEC_from_H9.24500	0	.	130675452	130675920	0	1	468	0
chr11	130675505	130675941	H9_polyA-_Chen.4661	0	.	130675505	130675941	0	1	436	0
chr11	130724296	130724971	H9_polyA+.14851	0	.	130724296	130724971	0	1	675	0
chr11	132922793	132926048	H1_polyA+.37721	0	+	132922793	132926048	0	2	50,2728	0,527
chr11	132926832	132929568	H1_polyA+.37722	0	.	132926832	132929568	0	1	2736	0
chr11	132929856	132930947	H1_polyA+.37723	0	.	132929856	132930947	0	1	1091	0
chr11	133271482	133289202	prostate_normal.19191	0	-	133271482	133289202	0	2	11197,983	0,16737
chr11	133271482	133284513	prostate_normal.19190	0	.	133271482	133284513	0	1	13031	0
chr11	133271523	133273429	HIT000086021	0	-	133271523	133273429	0	1	1906	0
chr11	133271539	133276845	NR_024344	0	-	133271539	133276845	0	1	5306	0
chr11	133271547	133279272	MIP101.22451	0	.	133271547	133279272	0	1	7725	0
chr11	133271568	133284947	prostate_carcinoma.32924	0	.	133271568	133284947	0	1	13379	0
chr11	133271589	133283674	CD4_Plagnol_resting.20073	0	.	133271589	133283674	0	1	12085	0
chr11	133271593	133284410	CD4_Plagnol_activated.20793	0	.	133271593	133284410	0	1	12817	0
chr11	133271601	133282584	B_cells_Cheung.63313	0	.	133271601	133282584	0	1	10983	0
chr11	133271609	133272700	B_Cells_Pritchard.1103803	0	.	133271609	133272700	0	1	1091	0
chr11	133271616	133272557	testes_Burge.17308	0	.	133271616	133272557	0	1	941	0
chr11	133271631	133280276	MCF10A_Thompson.7198	0	.	133271631	133280276	0	1	8645	0
chr11	133271655	133281873	NEC_from_H9.24526	0	.	133271655	133281873	0	1	10218	0
chr11	133271879	133273605	melanoma_Garraway_short_term_cultures.21909	0	.	133271879	133273605	0	1	1726	0
chr11	133272732	133277692	ZR751_Thompson.7933	0	.	133272732	133277692	0	1	4960	0
chr11	133272798	133276467	HIT000055597	0	-	133272798	133276467	0	1	3669	0
chr11	133272804	133276706	HIT000338393	0	-	133272804	133276706	0	1	3902	0
chr11	133272816	133275849	HIT000043722	0	-	133272816	133275849	0	1	3033	0
chr11	133272883	133283620	B_Cells_Pritchard.1103959	0	-	133272883	133283620	0	1	10737	0
chr11	133273049	133276454	MCF7_Burge_Thompson.9787	0	.	133273049	133276454	0	1	3405	0
chr11	133273159	133274958	colon_Burge.12452	0	.	133273159	133274958	0	1	1799	0
chr11	133273568	133275335	T47D_Burge_Thompson.9506	0	.	133273568	133275335	0	1	1767	0
chr11	133273705	133275711	melanoma_Garraway_short_term_cultures.21910	0	.	133273705	133275711	0	1	2006	0
chr11	133274004	133275108	REMC_LuminalBreast.33919	0	.	133274004	133275108	0	1	1104	0
chr11	133274054	133274601	testes_Burge.17312	0	.	133274054	133274601	0	1	547	0
chr11	133274054	133280446	testes_Burge.17313	0	+	133274054	133280446	0	2	430,19	0,6373
chr11	133274270	133274607	lymph_node_Burge.16062	0	.	133274270	133274607	0	1	337	0
chr11	133275142	133275725	HIT000337044	0	-	133275142	133275725	0	1	583	0
chr11	133275150	133275725	HIT000337939	0	-	133275150	133275725	0	1	575	0
chr11	133275408	133276423	T47D_Burge_Thompson.9508	0	.	133275408	133276423	0	1	1015	0
chr11	133275489	133276206	heart_Burge.9838	0	.	133275489	133276206	0	1	717	0
chr11	133275508	133276246	testes_Burge.17316	0	.	133275508	133276246	0	1	738	0
chr11	133275849	133276864	REMC_LuminalBreast.33920	0	.	133275849	133276864	0	1	1015	0
chr11	133275913	133276444	A549_Myers.25490	0	.	133275913	133276444	0	1	531	0
chr11	133276493	133278466	melanoma_Garraway_short_term_cultures.21911	0	.	133276493	133278466	0	1	1973	0
chr11	133276538	133277758	H1_rRNA-depleted_UCSD_REMC.29041	0	.	133276538	133277758	0	1	1220	0
chr11	133276542	133279046	T47D_Burge_Thompson.9507	0	.	133276542	133279046	0	1	2504	0
chr11	133276584	133278180	MCF7_Burge_Thompson.9789	0	.	133276584	133278180	0	1	1596	0
chr11	133276779	133277245	testes_Burge.17317	0	.	133276779	133277245	0	1	466	0
chr11	133276802	133277672	heart_Burge.9835	0	.	133276802	133277672	0	1	870	0
chr11	133276890	133280053	colon_Raymond.43499	0	+	133276890	133280053	0	2	340,132	0,3031
chr11	133277021	133277675	colon_Burge.12456	0	.	133277021	133277675	0	1	654	0
chr11	133277168	133277472	skeletal_muscle_Raymond.34348	0	.	133277168	133277472	0	1	304	0
chr11	133277245	133277636	testes_Burge.17318	0	.	133277245	133277636	0	1	391	0
chr11	133277260	133277646	HME_Burge.13652	0	.	133277260	133277646	0	1	386	0
chr11	133277264	133277609	heart_Raymond.22041	0	.	133277264	133277609	0	1	345	0
chr11	133277761	133278284	A549_Myers.25492	0	.	133277761	133278284	0	1	523	0
chr11	133277840	133281993	ZR751_Thompson.7932	0	.	133277840	133281993	0	1	4153	0
chr11	133277956	133278318	H1_rRNA-depleted_UCSD_REMC.29043	0	.	133277956	133278318	0	1	362	0
chr11	133279227	133281560	T47D_Burge_Thompson.9509	0	.	133279227	133281560	0	1	2333	0
chr11	133280105	133281718	REMC_LuminalBreast.33921	0	.	133280105	133281718	0	1	1613	0
chr11	133280408	133284351	MCF10A_Thompson.7200	0	.	133280408	133284351	0	1	3943	0
chr11	133280765	133281702	MCF7_Burge_Thompson.9790	0	.	133280765	133281702	0	1	937	0
chr11	133280799	133281129	HME_Burge.13654	0	.	133280799	133281129	0	1	330	0
chr11	133280875	133281257	H1_rRNA-depleted_UCSD_REMC.29045	0	.	133280875	133281257	0	1	382	0
chr11	133281662	133284385	T47D_Burge_Thompson.9510	0	.	133281662	133284385	0	1	2723	0
chr11	133282230	133282836	MCF7_Burge_Thompson.9791	0	.	133282230	133282836	0	1	606	0
chr11	133282387	133287152	ZR751_Thompson.7936	0	-	133282387	133287152	0	2	1995,162	0,4603
chr11	133282639	133284383	B_cells_Cheung.63314	0	.	133282639	133284383	0	1	1744	0
chr11	133283198	133284379	melanoma_Garraway_short_term_cultures.21912	0	.	133283198	133284379	0	1	1181	0
chr11	133283724	133284514	CD4_Plagnol_resting.20060	0	.	133283724	133284514	0	1	790	0
chr11	133283729	133287979	NEC_from_H9.24522	0	-	133283729	133287979	0	3	653,122,580	0,3261,3670
chr11	133283771	133284114	A549_Myers.25494	0	.	133283771	133284114	0	1	343	0
chr11	133283771	133284514	MCF7_Burge_Thompson.9792	0	.	133283771	133284514	0	1	743	0
chr11	133283781	133284384	testes_Burge.17321	0	.	133283781	133284384	0	1	603	0
chr11	133283791	133284360	H9_polyA-_Chen.4664	0	.	133283791	133284360	0	1	569	0
chr11	133285504	133286895	REMC_MyoepithelialBreast.31665	0	.	133285504	133286895	0	1	1391	0
chr11	133342222	133342648	A549_Myers.25499	0	.	133342222	133342648	0	1	426	0
chr11	133410555	133411311	prostate_carcinoma.32911	0	.	133410555	133411311	0	1	756	0
chr11	133410612	133411211	T47D_Burge_Thompson.9524	0	.	133410612	133411211	0	1	599	0
chr11	133410738	133411362	H1_polyA+.37768	0	.	133410738	133411362	0	1	624	0
chr11	133411496	133413473	prostate_carcinoma.32912	0	.	133411496	133413473	0	1	1977	0
chr11	133411502	133411869	prostate_normal.19184	0	.	133411502	133411869	0	1	367	0
chr11	133411502	133411962	CD4_Snyder.24769	0	.	133411502	133411962	0	1	460	0
chr11	133411532	133412180	T47D_Burge_Thompson.9525	0	.	133411532	133412180	0	1	648	0
chr11	133411710	133412750	B_Cells_Pritchard.1104079	0	.	133411710	133412750	0	1	1040	0
chr11	133412146	133416220	H1_polyA+.37770	0	+	133412146	133416220	0	2	873,1354	0,2720
chr11	133412213	133415044	ENST00000531938	0	+	133412213	133415044	0	2	533,178	0,2653
chr11	133412304	133413490	CD4_Snyder.24771	0	.	133412304	133413490	0	1	1186	0
chr11	133413836	133417113	prostate_carcinoma.32913	0	.	133413836	133417113	0	1	3277	0
chr11	133414078	133414424	CD4_Snyder.24770	0	.	133414078	133414424	0	1	346	0
chr11	133414400	133416428	prostate_normal.19182	0	.	133414400	133416428	0	1	2028	0
chr11	133414436	133415930	REMC_BreastStem.17421	0	.	133414436	133415930	0	1	1494	0
chr11	133414651	133415254	H1_polyA+.37769	0	.	133414651	133415254	0	1	603	0
chr11	133414854	133415809	B_Cells_Pritchard.1104089	0	.	133414854	133415809	0	1	955	0
chr11	133414869	133416264	T47D_Burge_Thompson.9526	0	.	133414869	133416264	0	1	1395	0
chr11	133416910	133418000	brain_AmbionMAQC.14466	0	.	133416910	133418000	0	1	1090	0
chr11	133417221	133417681	prostate_carcinoma.32914	0	.	133417221	133417681	0	1	460	0
chr11	133417769	133418224	prostate_carcinoma.32915	0	.	133417769	133418224	0	1	455	0
chr11	133418460	133419063	REMC_BreastStem.17423	0	.	133418460	133419063	0	1	603	0
chr11	133418668	133419159	brain_AmbionMAQC.14467	0	.	133418668	133419159	0	1	491	0
chr11	133419497	133420865	prostate_carcinoma.32916	0	.	133419497	133420865	0	1	1368	0
chr11	133421843	133422876	REMC_BreastStem.17424	0	.	133421843	133422876	0	1	1033	0
chr11	133421875	133422302	brain_AmbionMAQC.14468	0	.	133421875	133422302	0	1	427	0
chr11	133644881	133646332	H1_polyA+.38093	0	.	133644881	133646332	0	1	1451	0
chr11	133791142	133792205	prostate_carcinoma.32935	0	.	133791142	133792205	0	1	1063	0
chr11	133795703	133800606	H1_polyA+.37792	0	.	133795703	133800606	0	1	4903	0
chr11	133797197	133798170	prostate_carcinoma.32939	0	.	133797197	133798170	0	1	973	0
chr11	133798889	133799502	prostate_carcinoma.32940	0	.	133798889	133799502	0	1	613	0
chr11	133800717	133822287	H1_polyA+.37793	0	-	133800717	133822287	0	2	5205,360	0,21210
chr11	133800717	133806159	H1_polyA+.37794	0	.	133800717	133806159	0	1	5442	0
chr11	133802320	133805855	prostate_carcinoma.32943	0	.	133802320	133805855	0	1	3535	0
chr11	133806241	133806722	H1_polyA+.37796	0	.	133806241	133806722	0	1	481	0
chr11	133811185	133815299	H1_polyA+.37798	0	.	133811185	133815299	0	1	4114	0
chr11	133812022	133815383	prostate_carcinoma.32947	0	.	133812022	133815383	0	1	3361	0
chr11	133815800	133819560	H1_polyA+.37795	0	.	133815800	133819560	0	1	3760	0
chr11	133815806	133816751	prostate_carcinoma.32948	0	.	133815806	133816751	0	1	945	0
chr11	133819706	133821715	H1_polyA+.37801	0	.	133819706	133821715	0	1	2009	0
chr11	133820904	133821697	prostate_carcinoma.32951	0	.	133820904	133821697	0	1	793	0
chr11	133822968	133823851	H1_polyA+.37802	0	.	133822968	133823851	0	1	883	0
chr11	133834000	133836009	prostate_carcinoma.32954	0	.	133834000	133836009	0	1	2009	0
chr11	133834054	133834526	H1_polyA+.37806	0	.	133834054	133834526	0	1	472	0
chr11	133834677	133835801	H1_polyA+.37807	0	.	133834677	133835801	0	1	1124	0
chr11	133838653	133839722	H1_polyA+.37809	0	.	133838653	133839722	0	1	1069	0
chr11	133839804	133843181	H1_polyA+.37799	0	.	133839804	133843181	0	1	3377	0
chr11	133841288	133863019	ENST00000528482	0	+	133841288	133863019	0	6	1431,123,67,104,493,1402	0,1680,14660,16442,19777,20329
chr11	133841331	133841977	brain_AmbionMAQC.14497	0	.	133841331	133841977	0	1	646	0
chr11	133841371	133842160	prostate_normal.19215	0	.	133841371	133842160	0	1	789	0
chr11	133841503	133880854	prostate_carcinoma.32953	0	+	133841503	133880854	0	6	1216,90,11425,104,2247,7035	0,1381,3087,16227,18714,32316
chr11	133844584	133861580	H1_polyA+.37810	0	+	133844584	133861580	0	5	7038,1578,2229,104,515	0,7535,9202,13146,16481
chr11	133844584	133856027	prostate_carcinoma.32952	0	.	133844584	133856027	0	1	11443	0
chr11	133844587	133863212	prostate_normal.19217	0	+	133844587	133863212	0	3	11428,915,2147	0,13143,16478
chr11	133845768	133847520	liver_polyA+.44693	0	.	133845768	133847520	0	1	1752	0
chr11	133846766	133848376	HepG2_Caltech_ENCODE.11839	0	.	133846766	133848376	0	1	1610	0
chr11	133847621	133854026	liver_polyA+.44694	0	.	133847621	133854026	0	1	6405	0
chr11	133849277	133850494	HepG2_Caltech_ENCODE.11842	0	.	133849277	133850494	0	1	1217	0
chr11	133849800	133850795	brain_AmbionMAQC.14498	0	.	133849800	133850795	0	1	995	0
chr11	133852015	133852319	colon_Raymond.43568	0	.	133852015	133852319	0	1	304	0
chr11	133854402	133880717	ENST00000532886	0	+	133854402	133880717	0	3	1613,104,2670	0,3328,23645
chr11	133860376	133861535	K562.15160	0	.	133860376	133861535	0	1	1159	0
chr11	133860385	133861537	liver_polyA+.44698	0	.	133860385	133861537	0	1	1152	0
chr11	133861644	133862932	H1_polyA+.37812	0	.	133861644	133862932	0	1	1288	0
chr11	133861656	133862135	liver_polyA+.44699	0	.	133861656	133862135	0	1	479	0
chr11	133861715	133862217	K562.15161	0	.	133861715	133862217	0	1	502	0
chr11	133861735	133862097	kidney_Gilad.28919	0	.	133861735	133862097	0	1	362	0
chr11	133871833	133896393	prostate_carcinoma.32958	0	-	133871833	133896393	0	2	32,7696	0,16864
chr11	133872805	133874435	prostate_normal.19220	0	.	133872805	133874435	0	1	1630	0
chr11	133874546	133880854	prostate_normal.19218	0	.	133874546	133880854	0	1	6308	0
chr11	133877994	133879762	liver_polyA+.44710	0	.	133877994	133879762	0	1	1768	0
chr11	133878036	133878666	brain_AmbionMAQC.14499	0	.	133878036	133878666	0	1	630	0
chr11	133879346	133879799	HepG2_Caltech_ENCODE.11847	0	.	133879346	133879799	0	1	453	0
chr11	133883119	133884815	prostate_carcinoma.32960	0	.	133883119	133884815	0	1	1696	0
chr11	133885635	133886343	prostate_normal.19221	0	.	133885635	133886343	0	1	708	0
chr11	133888058	133896393	prostate_carcinoma.32959	0	.	133888058	133896393	0	1	8335	0
chr11	133891373	133892103	prostate_normal.19222	0	.	133891373	133892103	0	1	730	0
chr11	133896494	133898272	prostate_carcinoma.32962	0	-	133896494	133898272	0	2	1085,16	0,1762
chr11	133896494	133898543	prostate_carcinoma.32961	0	.	133896494	133898543	0	1	2049	0
chr11	133899902	133900977	prostate_carcinoma.32963	0	.	133899902	133900977	0	1	1075	0
chr11	133906506	133907578	prostate_carcinoma.32964	0	.	133906506	133907578	0	1	1072	0
chr11	133909829	133910948	prostate_carcinoma.32966	0	.	133909829	133910948	0	1	1119	0
chr11	133911052	133912069	prostate_carcinoma.32967	0	.	133911052	133912069	0	1	1017	0
chr11	133913024	133914051	prostate_carcinoma.32970	0	.	133913024	133914051	0	1	1027	0
chr11	133934571	133935178	prostate_carcinoma.32973	0	.	133934571	133935178	0	1	607	0
chr11	133935698	133937144	prostate_carcinoma.32974	0	.	133935698	133937144	0	1	1446	0
chr11	133940474	133940829	K562.15164	0	.	133940474	133940829	0	1	355	0
chr11	133945694	133949774	prostate_carcinoma.32979	0	.	133945694	133949774	0	1	4080	0
chr11	133946006	133946741	K562.15166	0	.	133946006	133946741	0	1	735	0
chr11	134089787	134091207	Rinn_00019551	0	+	134089787	134091207	0	2	97,398	0,1022
chr11	134106188	134106673	BT20_Thompson.7070	0	.	134106188	134106673	0	1	485	0
chr11	134112669	134113903	B_cells_Cheung.63423	0	.	134112669	134113903	0	1	1234	0
chr11	134112671	134113933	B_Cells_Pritchard.1105639	0	.	134112671	134113933	0	1	1262	0
chr11	134114043	134116491	B_cells_Cheung.63424	0	.	134114043	134116491	0	1	2448	0
chr11	134114085	134114760	B_Cells_Pritchard.1105641	0	.	134114085	134114760	0	1	675	0
chr11	134114921	134115222	B_Cells_Pritchard.1105645	0	.	134114921	134115222	0	1	301	0
chr11	134115533	134116268	brain_AmbionMAQC.14515	0	.	134115533	134116268	0	1	735	0
chr11	134119487	134120012	B_cells_Cheung.63428	0	.	134119487	134120012	0	1	525	0
chr11	134136163	134138969	H1_polyA+.37813	0	.	134136163	134138969	0	1	2806	0
chr11	134136928	134138239	BT20_Thompson.7072	0	.	134136928	134138239	0	1	1311	0
chr11	134137671	134138903	prostate_carcinoma.32986	0	.	134137671	134138903	0	1	1232	0
chr11	134227295	134228127	REMC_MyoepithelialBreast.31691	0	.	134227295	134228127	0	1	832	0
chr11	134241999	134244075	B_Cells_Pritchard.1106027	0	.	134241999	134244075	0	1	2076	0
chr11	134242004	134280129	B_cells_Cheung.63437	0	+	134242004	134280129	0	2	1372,21	0,38104
chr11	134242004	134244068	B_cells_Cheung.63438	0	.	134242004	134244068	0	1	2064	0
chr11	134320687	134351803	ENST00000529881	0	-	134320687	134351803	0	6	244,1067,67,202,214,62	0,2052,3170,9838,13394,31054
chr11	134323363	134324538	B_Cells_Pritchard.1106259	0	.	134323363	134324538	0	1	1175	0
chr11	134323522	134324646	B_cells_Cheung.63453	0	.	134323522	134324646	0	1	1124	0
chr11	134329113	134330784	B_cells_Cheung.63461	0	.	134329113	134330784	0	1	1671	0
chr11	134329169	134329629	B_Cells_Pritchard.1106283	0	.	134329169	134329629	0	1	460	0
chr11	134330146	134330780	B_Cells_Pritchard.1106287	0	.	134330146	134330780	0	1	634	0
chr11	134339655	134349595	B_Cells_Pritchard.1106337	0	-	134339655	134349595	0	2	247,419	0,9521
chr11	134360455	134361903	HIT000050123	0	+	134360455	134361903	0	1	1448	0
chr12	248454	249625	CD4_Plagnol_activated.20795	0	.	248454	249625	0	1	1171	0
chr12	248756	249666	CD4_Plagnol_resting.20146	0	.	248756	249666	0	1	910	0
chr12	248778	249862	B_cells_Cheung.63486	0	.	248778	249862	0	1	1084	0
chr12	249825	255796	prostate_normal.19245	0	-	249825	255796	0	2	70,938	0,5033
chr12	253363	256550	HIT000028376	0	-	253363	256550	0	1	3187	0
chr12	253763	255855	HIT000044265	0	-	253763	255855	0	1	2092	0
chr12	254142	255866	liver_polyA+.44746	0	-	254142	255866	0	2	511,1008	0,716
chr12	254373	256725	brain_AmbionMAQC.14529	0	.	254373	256725	0	1	2352	0
chr12	254425	256807	HeLa_polyA+_Chen.11958	0	.	254425	256807	0	1	2382	0
chr12	254747	256054	MDAMB468_Thompson.8312	0	.	254747	256054	0	1	1307	0
chr12	256468	256772	CD4_Snyder.24808	0	.	256468	256772	0	1	304	0
chr12	932479	933811	REMC_LuminalBreast.34071	0	.	932479	933811	0	1	1332	0
chr12	944689	945542	prostate_carcinoma.33092	0	.	944689	945542	0	1	853	0
chr12	944696	945341	prostate_normal.19286	0	.	944696	945341	0	1	645	0
chr12	946828	949131	REMC_LuminalBreast.34078	0	.	946828	949131	0	1	2303	0
chr12	947171	948673	H1_polyA+.37887	0	.	947171	948673	0	1	1502	0
chr12	947310	955495	prostate_carcinoma.33088	0	-	947310	955495	0	2	74,2314	0,5871
chr12	949644	951961	H1_polyA+.37888	0	.	949644	951961	0	1	2317	0
chr12	949650	951972	REMC_LuminalBreast.34079	0	.	949650	951972	0	1	2322	0
chr12	951420	951923	prostate_carcinoma.33099	0	.	951420	951923	0	1	503	0
chr12	951431	951930	HepG2_Caltech_ENCODE.11893	0	.	951431	951930	0	1	499	0
chr12	951496	951929	prostate_normal.19288	0	.	951496	951929	0	1	433	0
chr12	952732	957174	REMC_LuminalBreast.34081	0	.	952732	957174	0	1	4442	0
chr12	952796	957686	H1_polyA+.37891	0	.	952796	957686	0	1	4890	0
chr12	952796	970547	H1_polyA+.37890	0	-	952796	970547	0	3	3737,233,70	0,16439,17681
chr12	953237	954119	prostate_normal.19289	0	.	953237	954119	0	1	882	0
chr12	953238	955497	MIP101.22607	0	.	953238	955497	0	1	2259	0
chr12	953271	955502	melanoma_Garraway_short_term_cultures.22021	0	.	953271	955502	0	1	2231	0
chr12	953284	954116	brain_AmbionMAQC.14580	0	.	953284	954116	0	1	832	0
chr12	953356	956959	REMC_MyoepithelialBreast.31998	0	.	953356	956959	0	1	3603	0
chr12	954643	969468	HIT000095548	0	-	954643	969468	0	2	1890,233	0,14592
chr12	954724	969468	ENST00000503602	0	-	954724	969468	0	2	1809,233	0,14511
chr12	955714	957227	B_cells_Cheung.63680	0	.	955714	957227	0	1	1513	0
chr12	955719	957632	melanoma_Garraway_short_term_cultures.22022	0	.	955719	957632	0	1	1913	0
chr12	955719	956653	BT20_Thompson.7092	0	.	955719	956653	0	1	934	0
chr12	955724	970472	prostate_carcinoma.33089	0	-	955724	970472	0	2	809,1237	0,13511
chr12	960610	962237	H1_polyA+.37897	0	.	960610	962237	0	1	1627	0
chr12	960670	961055	B_cells_Cheung.63682	0	.	960670	961055	0	1	385	0
chr12	962315	964103	REMC_LuminalBreast.34084	0	.	962315	964103	0	1	1788	0
chr12	963106	964133	H1_polyA+.37898	0	.	963106	964133	0	1	1027	0
chr12	963116	964105	REMC_MyoepithelialBreast.32000	0	.	963116	964105	0	1	989	0
chr12	964390	965163	K562.15201	0	.	964390	965163	0	1	773	0
chr12	964497	965083	melanoma_Garraway_short_term_cultures.22025	0	.	964497	965083	0	1	586	0
chr12	964509	965387	H1_polyA+.37899	0	.	964509	965387	0	1	878	0
chr12	964539	965351	REMC_MyoepithelialBreast.32001	0	.	964539	965351	0	1	812	0
chr12	964587	965050	B_cells_Cheung.63687	0	.	964587	965050	0	1	463	0
chr12	966822	970537	K562.15203	0	-	966822	970537	0	3	1273,233,60	0,2413,3655
chr12	969028	969615	MCF7_Burge_Thompson.9829	0	.	969028	969615	0	1	587	0
chr12	969057	969628	A549_Myers.25657	0	.	969057	969628	0	1	571	0
chr12	969244	969623	BT474_Burge_Thompson.11036	0	.	969244	969623	0	1	379	0
chr12	969261	969628	brain_AmbionMAQC.14585	0	.	969261	969628	0	1	367	0
chr12	1477137	1478252	REMC_BreastStem.17532	0	.	1477137	1478252	0	1	1115	0
chr12	1478398	1483203	REMC_BreastStem.17533	0	+	1478398	1483203	0	2	1264,1310	0,3495
chr12	1478813	1479398	REMC_MyoepithelialBreast.32186	0	.	1478813	1479398	0	1	585	0
chr12	1478953	1480558	A549_Myers.25680	0	.	1478953	1480558	0	1	1605	0
chr12	1479211	1480407	prostate_carcinoma.33153	0	.	1479211	1480407	0	1	1196	0
chr12	1479370	1483463	REMC_LuminalBreast.34133	0	+	1479370	1483463	0	2	292,1570	0,2523
chr12	1479905	1483422	K562.15207	0	+	1479905	1483422	0	2	298,1529	0,1988
chr12	1479916	1483851	Rinn_00020158	0	+	1479916	1483851	0	2	287,1959	0,1976
chr12	1479917	1483851	NR_028415	0	+	1479917	1483851	0	2	286,1958	0,1976
chr12	1479950	1486745	Rinn_00020229	0	+	1479950	1486745	0	3	253,1017,1147	0,1942,5648
chr12	1479951	1486745	ENST00000515614	0	+	1479951	1486745	0	3	252,1016,1146	0,1942,5648
chr12	1479951	1486745	HIT000015483	0	+	1479951	1486745	0	3	247,1010,1160	0,1936,5634
chr12	1480027	1480345	B_Cells_Pritchard.1110763	0	.	1480027	1480345	0	1	318	0
chr12	1480769	1483463	REMC_LuminalBreast.34132	0	.	1480769	1483463	0	1	2694	0
chr12	1480883	1483203	REMC_BreastStem.17534	0	.	1480883	1483203	0	1	2320	0
chr12	1481236	1481772	A549_Myers.25681	0	.	1481236	1481772	0	1	536	0
chr12	1481745	1484207	REMC_MyoepithelialBreast.32187	0	.	1481745	1484207	0	1	2462	0
chr12	1482158	1483308	BT20_Thompson.7085	0	.	1482158	1483308	0	1	1150	0
chr12	1482261	1483376	MCF10A_Thompson.7250	0	.	1482261	1483376	0	1	1115	0
chr12	1482343	1483249	MDAMB231_Thompson.7322	0	.	1482343	1483249	0	1	906	0
chr12	1482490	1483330	MDAMB468_Thompson.8328	0	.	1482490	1483330	0	1	840	0
chr12	1482508	1483097	A549_Myers.25683	0	.	1482508	1483097	0	1	589	0
chr12	1482562	1483125	breast_Burge.13537	0	.	1482562	1483125	0	1	563	0
chr12	1482590	1483136	HeLa_polyA+_Chen.12017	0	.	1482590	1483136	0	1	546	0
chr12	1482697	1483882	HIT000089890	0	+	1482697	1483882	0	1	1185	0
chr12	1484699	1498945	prostate_carcinoma.33154	0	-	1484699	1498945	0	2	657,790	0,13456
chr12	1488329	1492501	REMC_MyoepithelialBreast.32189	0	.	1488329	1492501	0	1	4172	0
chr12	1490370	1492493	REMC_BreastStem.17538	0	.	1490370	1492493	0	1	2123	0
chr12	1491118	1492566	REMC_LuminalBreast.34138	0	.	1491118	1492566	0	1	1448	0
chr12	1495826	1499635	REMC_MyoepithelialBreast.32192	0	.	1495826	1499635	0	1	3809	0
chr12	1495992	1501585	B_Cells_Pritchard.1110913	0	+	1495992	1501585	0	2	3623,68	0,5525
chr12	1497088	1498576	prostate_normal.19316	0	.	1497088	1498576	0	1	1488	0
chr12	1497628	1498681	MCF10A_Thompson.7253	0	.	1497628	1498681	0	1	1053	0
chr12	1497919	1498416	B_cells_Cheung.63737	0	.	1497919	1498416	0	1	497	0
chr12	1498124	1498945	prostate_carcinoma.33156	0	.	1498124	1498945	0	1	821	0
chr12	1498143	1498982	REMC_BreastStem.17540	0	.	1498143	1498982	0	1	839	0
chr12	1499874	1507860	B_Cells_Pritchard.1110917	0	-	1499874	1507860	0	5	454,436,1856,551,1222	0,1913,2501,4832,6764
chr12	1504776	1506457	REMC_MyoepithelialBreast.32179	0	.	1504776	1506457	0	1	1681	0
chr12	1506698	1507074	prostate_carcinoma.33167	0	.	1506698	1507074	0	1	376	0
chr12	1632683	1648426	Rinn_00020668	0	-	1632683	1648426	0	3	1846,173,21	0,9960,15722
chr12	1637199	1637636	liver_polyA+.44967	0	.	1637199	1637636	0	1	437	0
chr12	1637223	1637636	kidney_Gilad.29107	0	.	1637223	1637636	0	1	413	0
chr12	1639160	1640488	liver_polyA+.44972	0	.	1639160	1640488	0	1	1328	0
chr12	1639160	1639806	kidney_Gilad.29102	0	.	1639160	1639806	0	1	646	0
chr12	1640915	1645464	A549_Myers.25713	0	-	1640915	1645464	0	2	805,74	0,4475
chr12	1640915	1641750	A549_Myers.25714	0	.	1640915	1641750	0	1	835	0
chr12	1640915	1641221	liver_polyA+.44973	0	.	1640915	1641221	0	1	306	0
chr12	1641294	1641666	HepG2_Caltech_ENCODE.11898	0	.	1641294	1641666	0	1	372	0
chr12	1641331	1643155	liver_polyA+.44974	0	-	1641331	1643155	0	2	443,739	0,1085
chr12	1641416	1641737	B_cells_Cheung.63772	0	.	1641416	1641737	0	1	321	0
chr12	1641421	1641766	prostate_carcinoma.33226	0	.	1641421	1641766	0	1	345	0
chr12	1642151	1645220	REMC_MyoepithelialBreast.31881	0	.	1642151	1645220	0	1	3069	0
chr12	1642152	1642636	brain_AmbionMAQC.14618	0	.	1642152	1642636	0	1	484	0
chr12	1642430	1643696	prostate_carcinoma.33227	0	.	1642430	1643696	0	1	1266	0
chr12	1644252	1644617	liver_polyA+.44978	0	.	1644252	1644617	0	1	365	0
chr12	1644255	1645121	prostate_carcinoma.33228	0	.	1644255	1645121	0	1	866	0
chr12	1900350	1900900	B_Cells_Pritchard.1111731	0	.	1900350	1900900	0	1	550	0
chr12	1901616	1903226	B_Cells_Pritchard.1111733	0	.	1901616	1903226	0	1	1610	0
chr12	1902113	1903200	B_cells_Cheung.63820	0	.	1902113	1903200	0	1	1087	0
chr12	1903790	1905573	B_Cells_Pritchard.1111737	0	.	1903790	1905573	0	1	1783	0
chr12	2687334	2688608	REMC_MyoepithelialBreast.32197	0	.	2687334	2688608	0	1	1274	0
chr12	2718301	2718832	prostate_carcinoma.33377	0	.	2718301	2718832	0	1	531	0
chr12	2718353	2719060	prostate_normal.19428	0	.	2718353	2719060	0	1	707	0
chr12	2718489	2718887	A549_Myers.25820	0	.	2718489	2718887	0	1	398	0
chr12	2725710	2733406	B_Cells_Pritchard.1113825	0	+	2725710	2733406	0	2	113,3071	0,4625
chr12	2728186	2729007	HepG2_Caltech_ENCODE.11919	0	.	2728186	2729007	0	1	821	0
chr12	2728546	2729043	B_cells_Cheung.63854	0	.	2728546	2729043	0	1	497	0
chr12	2729781	2731119	B_cells_Cheung.63856	0	.	2729781	2731119	0	1	1338	0
chr12	2730479	2731612	HepG2_Caltech_ENCODE.11922	0	.	2730479	2731612	0	1	1133	0
chr12	2731297	2732049	B_cells_Cheung.63857	0	.	2731297	2732049	0	1	752	0
chr12	2731663	2732540	brain_AmbionMAQC.14659	0	.	2731663	2732540	0	1	877	0
chr12	2732199	2747490	pHIT000111252	0	-	2732199	2747490	0	4	404,94,143,160	0,7493,14603,15131
chr12	2732199	2752939	pHIT000111254	0	-	2732199	2752939	0	7	404,94,143,160,55,92,60	0,7493,14603,15131,19080,19744,20680
chr12	2732239	2732749	HepG2_Caltech_ENCODE.11924	0	.	2732239	2732749	0	1	510	0
chr12	2732344	2733210	H1_polyA+.38109	0	.	2732344	2733210	0	1	866	0
chr12	2732805	2733157	HepG2_Caltech_ENCODE.11925	0	.	2732805	2733157	0	1	352	0
chr12	2735387	2736566	B_cells_Cheung.63861	0	.	2735387	2736566	0	1	1179	0
chr12	2739165	2739597	B_cells_Cheung.63864	0	.	2739165	2739597	0	1	432	0
chr12	2739170	2740779	H1_polyA+.38112	0	.	2739170	2740779	0	1	1609	0
chr12	2739174	2740695	B_Cells_Pritchard.1113855	0	.	2739174	2740695	0	1	1521	0
chr12	2739310	2739826	HepG2_Caltech_ENCODE.11930	0	.	2739310	2739826	0	1	516	0
chr12	2739357	2740679	MIP101.22670	0	.	2739357	2740679	0	1	1322	0
chr12	2739660	2741436	B_cells_Cheung.63866	0	.	2739660	2741436	0	1	1776	0
chr12	2739660	2751441	B_cells_Cheung.63865	0	-	2739660	2751441	0	3	1066,313,162	0,10075,11619
chr12	2739777	2740919	prostate_carcinoma.33718	0	.	2739777	2740919	0	1	1142	0
chr12	2740081	2740977	HepG2_Caltech_ENCODE.11931	0	.	2740081	2740977	0	1	896	0
chr12	2740327	2740643	prostate_normal.19431	0	.	2740327	2740643	0	1	316	0
chr12	2740626	2751096	NR_033958	0	-	2740626	2751096	0	5	100,143,160,145,23	0,6176,6704,9109,10447
chr12	2745070	2745705	B_Cells_Pritchard.1113871	0	.	2745070	2745705	0	1	635	0
chr12	2746563	2747336	HepG2_Caltech_ENCODE.11933	0	.	2746563	2747336	0	1	773	0
chr12	2749120	2750125	B_Cells_Pritchard.1113885	0	.	2749120	2750125	0	1	1005	0
chr12	2752550	2753388	B_Cells_Pritchard.1113899	0	.	2752550	2753388	0	1	838	0
chr12	2755478	2756298	B_cells_Cheung.63873	0	.	2755478	2756298	0	1	820	0
chr12	2763435	2763930	B_Cells_Pritchard.1123275	0	-	2763435	2763930	0	1	495	0
chr12	2766357	2767013	B_cells_Cheung.64379	0	.	2766357	2767013	0	1	656	0
chr12	2771994	2774299	XR_040745	0	-	2771994	2774299	0	1	2305	0
chr12	2771994	2774299	XR_040744	0	-	2771994	2774299	0	1	2305	0
chr12	2772006	2774305	HIT000021117	0	-	2772006	2774305	0	1	2299	0
chr12	2787780	2788102	CD4_Snyder.24972	0	.	2787780	2788102	0	1	322	0
chr12	2787788	2788234	melanoma_Garraway_short_term_cultures.22085	0	.	2787788	2788234	0	1	446	0
chr12	2816147	2821112	H9_polyA+.15023	0	-	2816147	2821112	0	3	267,76,567	0,3483,4398
chr12	2816883	2820003	H1_polyA+.38844	0	.	2816883	2820003	0	1	3120	0
chr12	2816890	2818354	HepG2_Caltech_ENCODE.11940	0	.	2816890	2818354	0	1	1464	0
chr12	2816917	2820002	REMC_MyoepithelialBreast.32271	0	.	2816917	2820002	0	1	3085	0
chr12	2816991	2819977	REMC_LuminalBreast.34646	0	.	2816991	2819977	0	1	2986	0
chr12	2817083	2818318	HeLa_polyA+_Chen.12042	0	.	2817083	2818318	0	1	1235	0
chr12	2817235	2818403	CD4_Plagnol_activated.20946	0	.	2817235	2818403	0	1	1168	0
chr12	2817420	2818319	K562.15291	0	.	2817420	2818319	0	1	899	0
chr12	2817719	2818322	brain_AmbionMAQC.14679	0	.	2817719	2818322	0	1	603	0
chr12	2817810	2818237	NEC_from_H9.24766	0	.	2817810	2818237	0	1	427	0
chr12	2818578	2819861	ZR751_Thompson.8067	0	.	2818578	2819861	0	1	1283	0
chr12	2818587	2819635	melanoma_Garraway_short_term_cultures.22102	0	.	2818587	2819635	0	1	1048	0
chr12	2818757	2819539	T47D_Burge_Thompson.9607	0	.	2818757	2819539	0	1	782	0
chr12	2818759	2819629	BT474_Burge_Thompson.11455	0	.	2818759	2819629	0	1	870	0
chr12	2818858	2819644	HeLa_polyA+_Chen.12044	0	.	2818858	2819644	0	1	786	0
chr12	2819165	2819587	K562.15292	0	.	2819165	2819587	0	1	422	0
chr12	2819264	2819625	CD4_Plagnol_resting.20315	0	.	2819264	2819625	0	1	361	0
chr12	2820148	2821041	ZR751_Thompson.8068	0	.	2820148	2821041	0	1	893	0
chr12	2820194	2821151	melanoma_Garraway_short_term_cultures.22103	0	.	2820194	2821151	0	1	957	0
chr12	2820203	2821147	MIP101.22903	0	.	2820203	2821147	0	1	944	0
chr12	2820255	2821166	HeLa_polyA+_Chen.12046	0	.	2820255	2821166	0	1	911	0
chr12	2820267	2821161	CD4_Plagnol_activated.20948	0	.	2820267	2821161	0	1	894	0
chr12	2820270	2821055	CD4_Plagnol_resting.20316	0	.	2820270	2821055	0	1	785	0
chr12	2820272	2821171	H1_polyA+.38845	0	.	2820272	2821171	0	1	899	0
chr12	2820314	2821098	MCF7_Burge_Thompson.9949	0	.	2820314	2821098	0	1	784	0
chr12	2827041	2828326	B_Cells_Pritchard.1123327	0	-	2827041	2828326	0	1	1285	0
chr12	2827084	2828470	melanoma_Garraway_short_term_cultures.22107	0	.	2827084	2828470	0	1	1386	0
chr12	2827104	2827940	MeWo_Garraway.11840	0	.	2827104	2827940	0	1	836	0
chr12	2827494	2828201	CD4_Plagnol_resting.20320	0	.	2827494	2828201	0	1	707	0
chr12	2859856	2862897	B_cells_Cheung.64397	0	.	2859856	2862897	0	1	3041	0
chr12	2928334	2930120	REMC_LuminalBreast.34416	0	.	2928334	2930120	0	1	1786	0
chr12	3020863	3024377	HIT000007026	0	-	3020863	3024377	0	1	3514	0
chr12	3021842	3022148	H1_rRNA-depleted_UCSD_REMC.29442	0	.	3021842	3022148	0	1	306	0
chr12	3022669	3023459	H1_rRNA-depleted_UCSD_REMC.29451	0	.	3022669	3023459	0	1	790	0
chr12	3022718	3023354	IMR90_UCSD_REMC.16620	0	-	3022718	3023354	0	1	636	0
chr12	3022897	3024106	MB435_Burge.14345	0	.	3022897	3024106	0	1	1209	0
chr12	3022899	3024091	skeletal_muscle_Burge.9942	0	.	3022899	3024091	0	1	1192	0
chr12	3022906	3023859	adipose_Burge.12824	0	.	3022906	3023859	0	1	953	0
chr12	3022906	3023305	colon_Burge.12697	0	.	3022906	3023305	0	1	399	0
chr12	3022917	3023459	lymph_node_Burge.16266	0	.	3022917	3023459	0	1	542	0
chr12	3022930	3023305	breast_Burge.13598	0	.	3022930	3023305	0	1	375	0
chr12	3022934	3024075	brain_AmbionMAQC.14702	0	.	3022934	3024075	0	1	1141	0
chr12	3022945	3023679	testes_Burge.17545	0	.	3022945	3023679	0	1	734	0
chr12	3022946	3023860	K562.15234	0	.	3022946	3023860	0	1	914	0
chr12	3023121	3023581	HME_Burge.13809	0	.	3023121	3023581	0	1	460	0
chr12	3025567	3026436	melanoma_Garraway_short_term_cultures.22146	0	.	3025567	3026436	0	1	869	0
chr12	3027004	3027429	MIP101.22972	0	.	3027004	3027429	0	1	425	0
chr12	3029289	3031247	REMC_BreastStem.17697	0	.	3029289	3031247	0	1	1958	0
chr12	3029509	3031650	REMC_LuminalBreast.34446	0	.	3029509	3031650	0	1	2141	0
chr12	3031954	3033472	H1_polyA+.38911	0	.	3031954	3033472	0	1	1518	0
chr12	3031999	3033527	REMC_LuminalBreast.34447	0	.	3031999	3033527	0	1	1528	0
chr12	3033682	3037834	REMC_LuminalBreast.34448	0	.	3033682	3037834	0	1	4152	0
chr12	3033782	3036337	H1_polyA+.38912	0	.	3033782	3036337	0	1	2555	0
chr12	3034515	3037287	REMC_MyoepithelialBreast.32317	0	.	3034515	3037287	0	1	2772	0
chr12	3034524	3036371	REMC_BreastStem.17698	0	.	3034524	3036371	0	1	1847	0
chr12	3038924	3042801	REMC_MyoepithelialBreast.32319	0	.	3038924	3042801	0	1	3877	0
chr12	3041887	3042900	REMC_LuminalBreast.34451	0	.	3041887	3042900	0	1	1013	0
chr12	3049470	3050126	REMC_MyoepithelialBreast.32322	0	.	3049470	3050126	0	1	656	0
chr12	3270229	3271722	REMC_LuminalBreast.34510	0	.	3270229	3271722	0	1	1493	0
chr12	3272235	3273844	REMC_LuminalBreast.34511	0	.	3272235	3273844	0	1	1609	0
chr12	3272462	3274392	brain_AmbionMAQC.14719	0	.	3272462	3274392	0	1	1930	0
chr12	3272842	3273190	A549_Myers.25897	0	.	3272842	3273190	0	1	348	0
chr12	3274020	3276540	REMC_MyoepithelialBreast.32323	0	.	3274020	3276540	0	1	2520	0
chr12	3274492	3276570	brain_AmbionMAQC.14720	0	.	3274492	3276570	0	1	2078	0
chr12	3274542	3275200	prostate_carcinoma.33442	0	.	3274542	3275200	0	1	658	0
chr12	3274823	3276962	REMC_LuminalBreast.34512	0	.	3274823	3276962	0	1	2139	0
chr12	3275628	3279653	HIT000012842	0	-	3275628	3279653	0	2	2059,246	0,3779
chr12	3276772	3277788	brain_AmbionMAQC.14721	0	.	3276772	3277788	0	1	1016	0
chr12	3277054	3278741	REMC_LuminalBreast.34513	0	.	3277054	3278741	0	1	1687	0
chr12	3278003	3279353	brain_AmbionMAQC.14718	0	.	3278003	3279353	0	1	1350	0
chr12	3279077	3290640	pHIT000111265	0	-	3279077	3290640	0	7	138,67,156,59,105,71,73	0,3686,4131,4462,7113,8097,11490
chr12	3279218	3280101	prostate_carcinoma.33443	0	.	3279218	3280101	0	1	883	0
chr12	3279234	3279840	A549_Myers.25900	0	.	3279234	3279840	0	1	606	0
chr12	3282144	3287240	brain_AmbionMAQC.14724	0	-	3282144	3287240	0	5	516,67,252,14,604	0,619,1064,4137,4492
chr12	3282196	3284824	prostate_carcinoma.33445	0	.	3282196	3284824	0	1	2628	0
chr12	3282763	3290640	pHIT000111268	0	-	3282763	3290640	0	6	67,156,59,105,71,73	0,445,776,3427,4411,7804
chr12	3283805	3285754	H1_polyA+.38144	0	.	3283805	3285754	0	1	1949	0
chr12	3284286	3284736	A549_Myers.25905	0	.	3284286	3284736	0	1	450	0
chr12	3284939	3288477	prostate_carcinoma.33446	0	.	3284939	3288477	0	1	3538	0
chr12	3285308	3286327	REMC_LuminalBreast.34514	0	.	3285308	3286327	0	1	1019	0
chr12	3285340	3285809	brain_AmbionMAQC.14727	0	.	3285340	3285809	0	1	469	0
chr12	3289064	3290135	prostate_carcinoma.33448	0	.	3289064	3290135	0	1	1071	0
chr12	3290325	3292345	REMC_LuminalBreast.34516	0	.	3290325	3292345	0	1	2020	0
chr12	3291770	3308348	pHIT000111269	0	+	3291770	3308348	0	5	195,173,61,161,172	0,4485,8540,11025,16406
chr12	3291770	3297580	pHIT000111266	0	+	3291770	3297580	0	3	195,173,19	0,4485,5791
chr12	3292776	3293446	A549_Myers.25909	0	.	3292776	3293446	0	1	670	0
chr12	3293712	3302381	prostate_carcinoma.33450	0	.	3293712	3302381	0	1	8669	0
chr12	3295534	3296731	REMC_LuminalBreast.34518	0	.	3295534	3296731	0	1	1197	0
chr12	3295580	3297069	H1_polyA+.38147	0	.	3295580	3297069	0	1	1489	0
chr12	3295587	3296077	brain_AmbionMAQC.14728	0	.	3295587	3296077	0	1	490	0
chr12	3296140	3296520	prostate_normal.19510	0	.	3296140	3296520	0	1	380	0
chr12	3296274	3296891	BT474_Burge_Thompson.11054	0	.	3296274	3296891	0	1	617	0
chr12	3298143	3304770	HIT000020220	0	-	3298143	3304770	0	2	1010,1995	0,4632
chr12	3299252	3301363	REMC_LuminalBreast.34520	0	.	3299252	3301363	0	1	2111	0
chr12	3300364	3300856	H9_polyA+.15047	0	.	3300364	3300856	0	1	492	0
chr12	3300454	3300801	A549_Myers.25924	0	.	3300454	3300801	0	1	347	0
chr12	3301621	3304751	H1_polyA+.38150	0	.	3301621	3304751	0	1	3130	0
chr12	3302482	3305026	prostate_carcinoma.33451	0	.	3302482	3305026	0	1	2544	0
chr12	3305737	3307045	H1_polyA+.38151	0	.	3305737	3307045	0	1	1308	0
chr12	3306438	3307488	prostate_carcinoma.33452	0	.	3306438	3307488	0	1	1050	0
chr12	3308704	3309543	H1_polyA+.38152	0	.	3308704	3309543	0	1	839	0
chr12	3311207	3319641	H1_polyA+.38153	0	.	3311207	3319641	0	1	8434	0
chr12	3314715	3316190	REMC_LuminalBreast.34524	0	.	3314715	3316190	0	1	1475	0
chr12	3319741	3321028	H1_polyA+.38154	0	.	3319741	3321028	0	1	1287	0
chr12	3321158	3324500	H1_polyA+.38155	0	.	3321158	3324500	0	1	3342	0
chr12	3327164	3333196	H1_polyA+.38157	0	.	3327164	3333196	0	1	6032	0
chr12	3334620	3337263	H1_polyA+.38159	0	.	3334620	3337263	0	1	2643	0
chr12	3339895	3341787	H1_polyA+.38162	0	.	3339895	3341787	0	1	1892	0
chr12	3342081	3345315	H1_polyA+.38163	0	.	3342081	3345315	0	1	3234	0
chr12	3345134	3345436	A549_Myers.25930	0	.	3345134	3345436	0	1	302	0
chr12	3346005	3346926	H1_polyA+.38164	0	.	3346005	3346926	0	1	921	0
chr12	3432672	3433084	A549_Myers.25935	0	.	3432672	3433084	0	1	412	0
chr12	3437294	3440948	HIT000045709	0	+	3437294	3440948	0	1	3654	0
chr12	3462319	3462839	testes_Burge.17557	0	.	3462319	3462839	0	1	520	0
chr12	3745676	3746074	ZR751_Thompson.7988	0	.	3745676	3746074	0	1	398	0
chr12	3759485	3761743	H1_polyA+.38185	0	.	3759485	3761743	0	1	2258	0
chr12	3759524	3761731	CD4_Plagnol_activated.20987	0	.	3759524	3761731	0	1	2207	0
chr12	3760395	3761714	REMC_MyoepithelialBreast.32337	0	.	3760395	3761714	0	1	1319	0
chr12	3760531	3761733	prostate_carcinoma.33473	0	.	3760531	3761733	0	1	1202	0
chr12	3760930	3761394	B_cells_Cheung.63983	0	.	3760930	3761394	0	1	464	0
chr12	3760968	3761745	REMC_BreastStem.17706	0	.	3760968	3761745	0	1	777	0
chr12	3760995	3761931	HepG2_Caltech_ENCODE.11970	0	.	3760995	3761931	0	1	936	0
chr12	3889305	3889807	CD4_Snyder.25029	0	.	3889305	3889807	0	1	502	0
chr12	3897660	3910010	pHIT000111275	0	-	3897660	3910010	0	5	181,104,98,95,215	0,2495,6333,10776,12135
chr12	3899090	3899428	B_Cells_Pritchard.1116483	0	.	3899090	3899428	0	1	338	0
chr12	3909834	3910216	liver_polyA+.45278	0	.	3909834	3910216	0	1	382	0
chr12	4007138	4007481	HepG2_Caltech_ENCODE.11987	0	.	4007138	4007481	0	1	343	0
chr12	4009717	4010347	REMC_MyoepithelialBreast.32348	0	.	4009717	4010347	0	1	630	0
chr12	4010638	4010950	A549_Myers.25971	0	.	4010638	4010950	0	1	312	0
chr12	4011035	4012953	REMC_MyoepithelialBreast.32349	0	.	4011035	4012953	0	1	1918	0
chr12	4011140	4011465	A549_Myers.25972	0	.	4011140	4011465	0	1	325	0
chr12	4077000	4078864	K562.15250	0	-	4077000	4078864	0	2	409,462	0,1402
chr12	4077230	4078877	A549_Myers.25975	0	-	4077230	4078877	0	3	821,202,88	0,1141,1559
chr12	4077468	4078858	H1_polyA+.38253	0	.	4077468	4078858	0	1	1390	0
chr12	4077512	4078125	B_cells_Cheung.64028	0	.	4077512	4078125	0	1	613	0
chr12	4077858	4078579	melanoma_Garraway_short_term_cultures.22175	0	.	4077858	4078579	0	1	721	0
chr12	4077908	4078224	MeWo_Garraway.11823	0	.	4077908	4078224	0	1	316	0
chr12	4077912	4078593	HepG2_Caltech_ENCODE.11990	0	.	4077912	4078593	0	1	681	0
chr12	4078279	4078954	MeWo_Garraway.11824	0	.	4078279	4078954	0	1	675	0
chr12	4078339	4078702	B_cells_Cheung.64029	0	.	4078339	4078702	0	1	363	0
chr12	4094144	4097851	B_cells_Cheung.64035	0	.	4094144	4097851	0	1	3707	0
chr12	4113406	4113904	H1_rRNA-depleted_UCSD_REMC.29527	0	.	4113406	4113904	0	1	498	0
chr12	4115731	4116198	B_Cells_Pritchard.1117091	0	-	4115731	4116198	0	1	467	0
chr12	4125311	4125963	B_cells_Cheung.64047	0	.	4125311	4125963	0	1	652	0
chr12	4132943	4133421	B_cells_Cheung.64048	0	.	4132943	4133421	0	1	478	0
chr12	4143275	4144602	REMC_MyoepithelialBreast.32353	0	.	4143275	4144602	0	1	1327	0
chr12	4143639	4144556	B_cells_Cheung.64050	0	.	4143639	4144556	0	1	917	0
chr12	4143647	4144812	B_Cells_Pritchard.1117235	0	.	4143647	4144812	0	1	1165	0
chr12	4183559	4184187	H1_polyA+.38535	0	.	4183559	4184187	0	1	628	0
chr12	4207719	4208463	H1_polyA+.38542	0	.	4207719	4208463	0	1	744	0
chr12	4208880	4210711	H1_polyA+.38543	0	.	4208880	4210711	0	1	1831	0
chr12	4210887	4217390	H1_polyA+.38544	0	.	4210887	4217390	0	1	6503	0
chr12	4218656	4221943	H1_polyA+.38546	0	.	4218656	4221943	0	1	3287	0
chr12	4219062	4220480	REMC_BreastStem.17714	0	.	4219062	4220480	0	1	1418	0
chr12	4219491	4220134	BT474_Burge_Thompson.11078	0	.	4219491	4220134	0	1	643	0
chr12	4222132	4226861	H1_polyA+.38547	0	.	4222132	4226861	0	1	4729	0
chr12	4228196	4233023	REMC_BreastStem.17720	0	.	4228196	4233023	0	1	4827	0
chr12	4228196	4230553	B_cells_Cheung.64056	0	.	4228196	4230553	0	1	2357	0
chr12	4228851	4230974	H1_polyA+.38550	0	.	4228851	4230974	0	1	2123	0
chr12	4229039	4231086	prostate_carcinoma.33504	0	.	4229039	4231086	0	1	2047	0
chr12	4229060	4230963	prostate_normal.19528	0	.	4229060	4230963	0	1	1903	0
chr12	4235631	4241714	REMC_BreastStem.17724	0	.	4235631	4241714	0	1	6083	0
chr12	4236433	4238784	H1_polyA+.38553	0	.	4236433	4238784	0	1	2351	0
chr12	4236705	4238855	REMC_MyoepithelialBreast.32360	0	.	4236705	4238855	0	1	2150	0
chr12	4236816	4237543	B_Cells_Pritchard.1117535	0	.	4236816	4237543	0	1	727	0
chr12	4249233	4250061	CD4_Plagnol_resting.20447	0	.	4249233	4250061	0	1	828	0
chr12	4250116	4251474	REMC_MyoepithelialBreast.32355	0	.	4250116	4251474	0	1	1358	0
chr12	4251303	4251865	CD4_Plagnol_resting.20448	0	.	4251303	4251865	0	1	562	0
chr12	4286991	4287793	CD4_Plagnol_resting.20404	0	.	4286991	4287793	0	1	802	0
chr12	4287258	4288375	CD4_Plagnol_activated.21066	0	.	4287258	4288375	0	1	1117	0
chr12	4287308	4287691	A549_Myers.25981	0	.	4287308	4287691	0	1	383	0
chr12	4289902	4294418	B_cells_Cheung.65061	0	.	4289902	4294418	0	1	4516	0
chr12	4291487	4294515	REMC_MyoepithelialBreast.32443	0	.	4291487	4294515	0	1	3028	0
chr12	4292929	4294404	B_Cells_Pritchard.1124127	0	-	4292929	4294404	0	1	1475	0
chr12	4292933	4294402	CD4_Plagnol_activated.21072	0	.	4292933	4294402	0	1	1469	0
chr12	4293085	4293902	REMC_BreastStem.17798	0	.	4293085	4293902	0	1	817	0
chr12	4293191	4293867	H1_polyA+.38565	0	.	4293191	4293867	0	1	676	0
chr12	4293298	4293843	prostate_carcinoma.33517	0	.	4293298	4293843	0	1	545	0
chr12	4371888	4372202	A549_Myers.25995	0	.	4371888	4372202	0	1	314	0
chr12	4411717	4412254	K562.15269	0	.	4411717	4412254	0	1	537	0
chr12	4434162	4435230	H1_polyA+.38280	0	.	4434162	4435230	0	1	1068	0
chr12	4453805	4455172	REMC_LuminalBreast.34576	0	.	4453805	4455172	0	1	1367	0
chr12	4541104	4541549	H1_polyA+.38292	0	.	4541104	4541549	0	1	445	0
chr12	4675772	4676737	prostate_normal.19598	0	.	4675772	4676737	0	1	965	0
chr12	4675946	4676725	REMC_BreastStem.17755	0	.	4675946	4676725	0	1	779	0
chr12	4677856	4683489	H1_polyA+.38316	0	.	4677856	4683489	0	1	5633	0
chr12	4679840	4681920	B_Cells_Pritchard.1118783	0	.	4679840	4681920	0	1	2080	0
chr12	4682907	4683422	B_cells_Cheung.64176	0	.	4682907	4683422	0	1	515	0
chr12	4682931	4683471	B_Cells_Pritchard.1118787	0	.	4682931	4683471	0	1	540	0
chr12	4684751	4685943	B_Cells_Pritchard.1118793	0	.	4684751	4685943	0	1	1192	0
chr12	4696871	4698094	H1_polyA+.38323	0	.	4696871	4698094	0	1	1223	0
chr12	4697347	4697814	B_Cells_Pritchard.1118839	0	.	4697347	4697814	0	1	467	0
chr12	4759445	4760250	H1_polyA+.38335	0	.	4759445	4760250	0	1	805	0
chr12	4764356	4767726	H1_polyA+.38338	0	.	4764356	4767726	0	1	3370	0
chr12	4771792	4774337	H1_polyA+.38341	0	.	4771792	4774337	0	1	2545	0
chr12	4774846	4778803	H1_polyA+.38342	0	.	4774846	4778803	0	1	3957	0
chr12	5078665	5078992	A549_Myers.26036	0	.	5078665	5078992	0	1	327	0
chr12	5152340	5154995	BT20_Thompson.7154	0	.	5152340	5154995	0	1	2655	0
chr12	5152380	5153955	H1_polyA+.38454	0	.	5152380	5153955	0	1	1575	0
chr12	5152492	5153719	MCF7_Burge_Thompson.9898	0	.	5152492	5153719	0	1	1227	0
chr12	5152964	5153374	H1_rRNA-depleted_UCSD_REMC.29650	0	.	5152964	5153374	0	1	410	0
chr12	5191537	5192732	K562.15328	0	.	5191537	5192732	0	1	1195	0
chr12	5220106	5220883	H1_polyA+.38467	0	.	5220106	5220883	0	1	777	0
chr12	5252082	5258163	khalil_444	0	.	5252082	5258163	0	2	383,383	0,5698
chr12	5295387	5298774	HIT000006130	0	+	5295387	5298774	0	1	3387	0
chr12	5296990	5298608	H1_polyA+.38475	0	.	5296990	5298608	0	1	1618	0
chr12	5355687	5361242	H1_polyA+.38490	0	.	5355687	5361242	0	1	5555	0
chr12	5368015	5386078	HIT000290474	0	+	5368015	5386078	0	5	33,96,138,104,1034	0,13725,15573,16764,17029
chr12	5371700	5373269	prostate_carcinoma.33582	0	.	5371700	5373269	0	1	1569	0
chr12	5371760	5373342	H1_polyA+.38495	0	.	5371760	5373342	0	1	1582	0
chr12	5373596	5374519	prostate_carcinoma.33583	0	.	5373596	5374519	0	1	923	0
chr12	5373604	5376548	H1_polyA+.38491	0	.	5373604	5376548	0	1	2944	0
chr12	5373620	5375357	melanoma_Garraway_short_term_cultures.22214	0	.	5373620	5375357	0	1	1737	0
chr12	5374319	5374913	MCF7_Burge_Thompson.9904	0	.	5374319	5374913	0	1	594	0
chr12	5376682	5381862	H1_polyA+.38496	0	.	5376682	5381862	0	1	5180	0
chr12	5377597	5381845	prostate_carcinoma.33587	0	.	5377597	5381845	0	1	4248	0
chr12	5378188	5386833	prostate_carcinoma.33588	0	+	5378188	5386833	0	4	3648,138,423,339	0,5400,6591,8306
chr12	5378264	5385565	H1_polyA+.38497	0	+	5378264	5385565	0	3	3572,138,786	0,5324,6515
chr12	5379758	5381051	prostate_normal.19614	0	.	5379758	5381051	0	1	1293	0
chr12	5384782	5386081	prostate_normal.19616	0	.	5384782	5386081	0	1	1299	0
chr12	5385548	5386067	MCF7_Burge_Thompson.9900	0	.	5385548	5386067	0	1	519	0
chr12	5385616	5386075	prostate_carcinoma.33590	0	.	5385616	5386075	0	1	459	0
chr12	5407205	5409704	REMC_MyoepithelialBreast.32408	0	.	5407205	5409704	0	1	2499	0
chr12	5409126	5409597	liver_polyA+.45363	0	.	5409126	5409597	0	1	471	0
chr12	5488926	5491407	Rinn_00021026	0	+	5488926	5491407	0	2	333,395	0,2086
chr12	5497026	5505970	REMC_MyoepithelialBreast.32411	0	+	5497026	5505970	0	4	3470,237,33,4695	0,3795,4139,4249
chr12	5498382	5501042	prostate_carcinoma.33605	0	.	5498382	5501042	0	1	2660	0
chr12	5499550	5503393	Rinn_00020284	0	+	5499550	5503393	0	3	946,238,2119	0,1270,1724
chr12	5501281	5502677	prostate_normal.19624	0	.	5501281	5502677	0	1	1396	0
chr12	5501282	5503622	prostate_carcinoma.33606	0	.	5501282	5503622	0	1	2340	0
chr12	5502298	5502882	liver_polyA+.45377	0	.	5502298	5502882	0	1	584	0
chr12	5502775	5503115	IMR90_UCSD_REMC.16705	0	-	5502775	5503115	0	1	340	0
chr12	5503729	5504616	prostate_carcinoma.33607	0	.	5503729	5504616	0	1	887	0
chr12	5504730	5505702	prostate_carcinoma.33608	0	.	5504730	5505702	0	1	972	0
chr12	5504984	5506251	H1_polyA+.38446	0	.	5504984	5506251	0	1	1267	0
chr12	5531560	5532395	H1_polyA+.38449	0	.	5531560	5532395	0	1	835	0
chr12	5532955	5534991	prostate_carcinoma.33611	0	.	5532955	5534991	0	1	2036	0
chr12	5535342	5536833	H1_polyA+.38450	0	.	5535342	5536833	0	1	1491	0
chr12	6159783	6160510	A549_Myers.26073	0	.	6159783	6160510	0	1	727	0
chr12	6162476	6163467	HepG2_Caltech_ENCODE.12035	0	.	6162476	6163467	0	1	991	0
chr12	6165040	6167652	liver_polyA+.45404	0	-	6165040	6167652	0	3	1307,322,441	0,1448,2171
chr12	6168619	6169598	liver_polyA+.45402	0	+	6168619	6169598	0	2	468,280	0,699
chr12	6168681	6168986	A549_Myers.26075	0	.	6168681	6168986	0	1	305	0
chr12	6171822	6177766	Rinn_00020230	0	+	6171822	6177766	0	2	2438,1529	0,4415
chr12	6171823	6177766	ENST00000504269	0	+	6171823	6177766	0	2	2437,1528	0,4415
chr12	6176792	6178441	prostate_carcinoma.33636	0	.	6176792	6178441	0	1	1649	0
chr12	6177253	6178367	liver_polyA+.45413	0	.	6177253	6178367	0	1	1114	0
chr12	6177494	6177991	B_Cells_Pritchard.1122845	0	.	6177494	6177991	0	1	497	0
chr12	6177545	6178545	HepG2_Caltech_ENCODE.12041	0	.	6177545	6178545	0	1	1000	0
chr12	6223164	6225001	REMC_LuminalBreast.34615	0	.	6223164	6225001	0	1	1837	0
chr12	6227536	6231328	REMC_LuminalBreast.34617	0	.	6227536	6231328	0	1	3792	0
chr12	6235812	6238945	REMC_LuminalBreast.34623	0	.	6235812	6238945	0	1	3133	0
chr12	6245358	6246587	REMC_MyoepithelialBreast.32412	0	.	6245358	6246587	0	1	1229	0
chr12	6245404	6247205	REMC_LuminalBreast.34625	0	.	6245404	6247205	0	1	1801	0
chr12	6247716	6248450	REMC_LuminalBreast.34626	0	.	6247716	6248450	0	1	734	0
chr12	6250598	6251202	REMC_LuminalBreast.34629	0	.	6250598	6251202	0	1	604	0
chr12	6251736	6256144	REMC_LuminalBreast.34630	0	.	6251736	6256144	0	1	4408	0
chr12	6252539	6255083	REMC_MyoepithelialBreast.32414	0	.	6252539	6255083	0	1	2544	0
chr12	6253005	6253336	A549_Myers.26090	0	.	6253005	6253336	0	1	331	0
chr12	6253272	6254336	melanoma_Garraway_short_term_cultures.22222	0	.	6253272	6254336	0	1	1064	0
chr12	6256125	6257060	REMC_MyoepithelialBreast.32415	0	.	6256125	6257060	0	1	935	0
chr12	6256266	6258174	REMC_LuminalBreast.34631	0	.	6256266	6258174	0	1	1908	0
chr12	6257252	6257974	REMC_MyoepithelialBreast.32416	0	.	6257252	6257974	0	1	722	0
chr12	6257917	6258410	A549_Myers.26094	0	.	6257917	6258410	0	1	493	0
chr12	6258358	6259179	REMC_MyoepithelialBreast.32417	0	.	6258358	6259179	0	1	821	0
chr12	6258360	6262217	REMC_LuminalBreast.34619	0	.	6258360	6262217	0	1	3857	0
chr12	6258657	6259838	prostate_carcinoma.33653	0	.	6258657	6259838	0	1	1181	0
chr12	6258789	6259411	A549_Myers.26095	0	.	6258789	6259411	0	1	622	0
chr12	6259311	6262131	REMC_MyoepithelialBreast.32418	0	.	6259311	6262131	0	1	2820	0
chr12	6259999	6260896	prostate_carcinoma.33654	0	.	6259999	6260896	0	1	897	0
chr12	6260438	6260866	A549_Myers.26096	0	.	6260438	6260866	0	1	428	0
chr12	6261427	6262153	prostate_normal.19634	0	.	6261427	6262153	0	1	726	0
chr12	6261449	6262148	prostate_carcinoma.33655	0	.	6261449	6262148	0	1	699	0
chr12	6261476	6261818	A549_Myers.26097	0	.	6261476	6261818	0	1	342	0
chr12	6266806	6268052	REMC_LuminalBreast.34633	0	.	6266806	6268052	0	1	1246	0
chr12	6271011	6275254	REMC_LuminalBreast.34635	0	.	6271011	6275254	0	1	4243	0
chr12	6281816	6284888	REMC_LuminalBreast.34638	0	.	6281816	6284888	0	1	3072	0
chr12	6282331	6283086	REMC_MyoepithelialBreast.32499	0	.	6282331	6283086	0	1	755	0
chr12	6284941	6285701	REMC_LuminalBreast.34639	0	.	6284941	6285701	0	1	760	0
chr12	6376739	6381877	REMC_LuminalBreast.34761	0	.	6376739	6381877	0	1	5138	0
chr12	6378454	6381912	REMC_MyoepithelialBreast.32509	0	.	6378454	6381912	0	1	3458	0
chr12	6379123	6380019	REMC_BreastStem.17775	0	.	6379123	6380019	0	1	896	0
chr12	6379388	6379999	melanoma_Garraway_short_term_cultures.22236	0	.	6379388	6379999	0	1	611	0
chr12	6380994	6381670	melanoma_Garraway_short_term_cultures.22237	0	.	6380994	6381670	0	1	676	0
chr12	6381009	6381815	HeLa_polyA+_Chen.12140	0	.	6381009	6381815	0	1	806	0
chr12	6381225	6381798	liver_polyA+.45455	0	.	6381225	6381798	0	1	573	0
chr12	6382132	6386314	REMC_LuminalBreast.34762	0	.	6382132	6386314	0	1	4182	0
chr12	6389588	6390068	HeLa_polyA+_Chen.12143	0	.	6389588	6390068	0	1	480	0
chr12	6389823	6391201	REMC_BreastStem.17778	0	.	6389823	6391201	0	1	1378	0
chr12	6393394	6399292	REMC_BreastStem.17781	0	+	6393394	6399292	0	2	809,2869	0,3029
chr12	6393995	6394513	melanoma_Garraway_short_term_cultures.22240	0	.	6393995	6394513	0	1	518	0
chr12	6395559	6399539	REMC_MyoepithelialBreast.32513	0	.	6395559	6399539	0	1	3980	0
chr12	6395808	6397449	MIP101.24953	0	.	6395808	6397449	0	1	1641	0
chr12	6395933	6397616	prostate_normal.19818	0	.	6395933	6397616	0	1	1683	0
chr12	6396077	6399292	REMC_BreastStem.17780	0	.	6396077	6399292	0	1	3215	0
chr12	6396182	6397435	melanoma_Garraway_short_term_cultures.22241	0	.	6396182	6397435	0	1	1253	0
chr12	6396308	6397350	HeLa_polyA+_Chen.12144	0	.	6396308	6397350	0	1	1042	0
chr12	6399695	6401015	REMC_LuminalBreast.34765	0	.	6399695	6401015	0	1	1320	0
chr12	6399733	6401021	REMC_MyoepithelialBreast.32514	0	.	6399733	6401021	0	1	1288	0
chr12	6399798	6401211	REMC_BreastStem.17782	0	.	6399798	6401211	0	1	1413	0
chr12	6401431	6402076	REMC_MyoepithelialBreast.32515	0	.	6401431	6402076	0	1	645	0
chr12	6402252	6406058	REMC_MyoepithelialBreast.32516	0	.	6402252	6406058	0	1	3806	0
chr12	6402259	6403702	REMC_BreastStem.17783	0	.	6402259	6403702	0	1	1443	0
chr12	6402309	6408436	REMC_LuminalBreast.34671	0	.	6402309	6408436	0	1	6127	0
chr12	6403087	6403764	A549_Myers.26121	0	.	6403087	6403764	0	1	677	0
chr12	6403815	6404757	REMC_BreastStem.17784	0	.	6403815	6404757	0	1	942	0
chr12	6403960	6404570	B_Cells_Pritchard.1311257	0	-	6403960	6404570	0	1	610	0
chr12	6405359	6406042	REMC_BreastStem.17785	0	.	6405359	6406042	0	1	683	0
chr12	6405385	6406346	B_cells_Cheung.64247	0	.	6405385	6406346	0	1	961	0
chr12	6405606	6414727	B_Cells_Pritchard.1311265	0	-	6405606	6414727	0	2	1100,137	0,8984
chr12	6413214	6414813	REMC_BreastStem.17790	0	.	6413214	6414813	0	1	1599	0
chr12	6414917	6415863	REMC_BreastStem.17791	0	.	6414917	6415863	0	1	946	0
chr12	6457141	6458681	pHIT000021130	0	+	6457141	6458681	0	3	173,174,892	0,238,648
chr12	6457141	6458681	pHIT000021142	0	+	6457141	6458681	0	2	173,892	0,648
chr12	6457141	6459535	pHIT000111309	0	+	6457141	6459535	0	4	173,174,670,447	0,238,648,1947
chr12	6457141	6459535	pHIT000111302	0	+	6457141	6459535	0	4	173,174,592,447	0,238,726,1947
chr12	6457141	6459535	pHIT000111300	0	+	6457141	6459535	0	3	173,592,447	0,726,1947
chr12	6457246	6459535	pHIT000111318	0	+	6457246	6459535	0	3	68,592,447	0,621,1842
chr12	6457674	6458342	B_Cells_Pritchard.1311763	0	+	6457674	6458342	0	1	668	0
chr12	6457701	6460496	REMC_LuminalBreast.34681	0	.	6457701	6460496	0	1	2795	0
chr12	6457888	6458317	B_cells_Cheung.64308	0	.	6457888	6458317	0	1	429	0
chr12	6457959	6458307	REMC_MyoepithelialBreast.32425	0	.	6457959	6458307	0	1	348	0
chr12	6458445	6459707	REMC_MyoepithelialBreast.32426	0	.	6458445	6459707	0	1	1262	0
chr12	6458467	6459955	B_cells_Cheung.64309	0	.	6458467	6459955	0	1	1488	0
chr12	6458485	6459916	B_Cells_Pritchard.1311765	0	+	6458485	6459916	0	1	1431	0
chr12	6459043	6459535	pHIT000021155	0	+	6459043	6459535	0	1	492	0
chr12	6459068	6459916	B_Cells_Pritchard.1311767	0	-	6459068	6459916	0	2	115,553	0,295
chr12	6459068	6459637	HepG2_Caltech_ENCODE.12118	0	.	6459068	6459637	0	1	569	0
chr12	6459092	6459781	BT20_Thompson.7183	0	.	6459092	6459781	0	1	689	0
chr12	6459237	6459604	ZR751_Thompson.8040	0	.	6459237	6459604	0	1	367	0
chr12	6459437	6459974	BT474_Burge_Thompson.11137	0	.	6459437	6459974	0	1	537	0
chr12	6588710	6589142	liver_polyA+.45549	0	.	6588710	6589142	0	1	432	0
chr12	6590129	6594046	B_cells_Cheung.73021	0	.	6590129	6594046	0	1	3917	0
chr12	6590137	6592399	prostate_carcinoma.35158	0	.	6590137	6592399	0	1	2262	0
chr12	6590237	6592388	MIP101.24994	0	.	6590237	6592388	0	1	2151	0
chr12	6590416	6591156	CD4_Plagnol_resting.20486	0	.	6590416	6591156	0	1	740	0
chr12	6590449	6591363	HeLa_polyA+_Chen.12170	0	.	6590449	6591363	0	1	914	0
chr12	6590536	6590928	liver_polyA+.45505	0	.	6590536	6590928	0	1	392	0
chr12	6590619	6591932	A549_Myers.26185	0	.	6590619	6591932	0	1	1313	0
chr12	6590828	6591698	CD4_Plagnol_activated.21116	0	.	6590828	6591698	0	1	870	0
chr12	6591071	6591486	H1_rRNA-depleted_UCSD_REMC.29783	0	.	6591071	6591486	0	1	415	0
chr12	6592088	6592419	ZR751_Thompson.8084	0	.	6592088	6592419	0	1	331	0
chr12	6592491	6593928	prostate_normal.19702	0	.	6592491	6593928	0	1	1437	0
chr12	6593217	6594613	CD4_Plagnol_resting.20487	0	.	6593217	6594613	0	1	1396	0
chr12	6593378	6594539	prostate_carcinoma.33701	0	.	6593378	6594539	0	1	1161	0
chr12	6593467	6594056	A549_Myers.26187	0	.	6593467	6594056	0	1	589	0
chr12	6593478	6593823	liver_polyA+.45506	0	.	6593478	6593823	0	1	345	0
chr12	6713000	6718271	REMC_LuminalBreast.34721	0	.	6713000	6718271	0	1	5271	0
chr12	6714565	6715239	BT474_Burge_Thompson.11166	0	.	6714565	6715239	0	1	674	0
chr12	6715937	6718252	HepG2_Caltech_ENCODE.12079	0	.	6715937	6718252	0	1	2315	0
chr12	6716404	6718225	REMC_BreastStem.17838	0	.	6716404	6718225	0	1	1821	0
chr12	6718936	6719533	CD4_Plagnol_resting.20551	0	.	6718936	6719533	0	1	597	0
chr12	6719588	6720901	B_cells_Cheung.64352	0	.	6719588	6720901	0	1	1313	0
chr12	6719622	6720162	CD4_Plagnol_resting.20552	0	.	6719622	6720162	0	1	540	0
chr12	6723271	6723933	REMC_LuminalBreast.34725	0	.	6723271	6723933	0	1	662	0
chr12	7165731	7166450	ZR751_Thompson.8120	0	.	7165731	7166450	0	1	719	0
chr12	7204129	7206354	REMC_BreastStem.18156	0	.	7204129	7206354	0	1	2225	0
chr12	7204133	7213548	REMC_LuminalBreast.34773	0	+	7204133	7213548	0	2	4941,4348	0,5067
chr12	7204133	7213548	REMC_LuminalBreast.34772	0	.	7204133	7213548	0	1	9415	0
chr12	7218302	7220806	REMC_LuminalBreast.34776	0	.	7218302	7220806	0	1	2504	0
chr12	7229395	7230223	REMC_LuminalBreast.34781	0	.	7229395	7230223	0	1	828	0
chr12	7267584	7308693	pHIT000111355	0	-	7267584	7308693	0	4	4,131,180,174	0,5383,17175,40935
chr12	7320584	7321156	REMC_LuminalBreast.34820	0	.	7320584	7321156	0	1	572	0
chr12	7387990	7389002	B_cells_Cheung.64464	0	.	7387990	7389002	0	1	1012	0
chr12	7388360	7389336	B_Cells_Pritchard.1124757	0	.	7388360	7389336	0	1	976	0
chr12	7389109	7390351	B_cells_Cheung.64465	0	.	7389109	7390351	0	1	1242	0
chr12	7554283	7555479	liver_polyA+.45681	0	.	7554283	7555479	0	1	1196	0
chr12	7554615	7555358	kidney_Gilad.29604	0	.	7554615	7555358	0	1	743	0
chr12	7650734	7651059	HepG2_Caltech_ENCODE.12134	0	.	7650734	7651059	0	1	325	0
chr12	7650734	7651097	H1_polyA+.38641	0	.	7650734	7651097	0	1	363	0
chr12	7650753	7651096	B_cells_Cheung.64474	0	.	7650753	7651096	0	1	343	0
chr12	7650754	7651073	melanoma_Garraway_short_term_cultures.22419	0	.	7650754	7651073	0	1	319	0
chr12	7650758	7651097	K562.15436	0	.	7650758	7651097	0	1	339	0
chr12	7650759	7651096	HeLa_polyA+_Chen.12255	0	.	7650759	7651096	0	1	337	0
chr12	7650759	7651071	BT474_Burge_Thompson.11213	0	.	7650759	7651071	0	1	312	0
chr12	7650759	7651066	CD4_Plagnol_activated.21231	0	.	7650759	7651066	0	1	307	0
chr12	7650759	7651064	MIP101.22864	0	.	7650759	7651064	0	1	305	0
chr12	7650760	7651238	ZR751_Thompson.8137	0	.	7650760	7651238	0	1	478	0
chr12	7650760	7651066	CD4_Plagnol_resting.20632	0	.	7650760	7651066	0	1	306	0
chr12	7650769	7652572	prostate_carcinoma.33821	0	-	7650769	7652572	0	2	327,9	0,1794
chr12	7650770	7651108	IMR90_UCSD_REMC.16993	0	-	7650770	7651108	0	1	338	0
chr12	7652220	7652644	BT474_Burge_Thompson.11214	0	.	7652220	7652644	0	1	424	0
chr12	7652419	7652905	A549_Myers.26234	0	.	7652419	7652905	0	1	486	0
chr12	7770682	7771197	B_Cells_Pritchard.1125537	0	-	7770682	7771197	0	1	515	0
chr12	7770769	7771217	B_cells_Cheung.64480	0	.	7770769	7771217	0	1	448	0
chr12	8143798	8144436	REMC_MyoepithelialBreast.32591	0	.	8143798	8144436	0	1	638	0
chr12	8526564	8527577	B_Cells_Pritchard.1127029	0	.	8526564	8527577	0	1	1013	0
chr12	8536274	8537661	B_Cells_Pritchard.1127067	0	.	8536274	8537661	0	1	1387	0
chr12	8571086	8571579	B_Cells_Pritchard.1127179	0	.	8571086	8571579	0	1	493	0
chr12	8722067	8722747	REMC_MyoepithelialBreast.32612	0	.	8722067	8722747	0	1	680	0
chr12	8832412	8834029	H9_polyA-_Chen.4819	0	.	8832412	8834029	0	1	1617	0
chr12	8836084	8837062	H1_polyA+.39733	0	.	8836084	8837062	0	1	978	0
chr12	8836085	8836581	H9_polyA-_Chen.4821	0	.	8836085	8836581	0	1	496	0
chr12	8837921	8841548	H9_polyA+.15361	0	+	8837921	8841548	0	2	462,1	0,3626
chr12	8837983	8838941	H9_polyA-_Chen.4823	0	.	8837983	8838941	0	1	958	0
chr12	8841597	8842042	B_cells_Cheung.64691	0	.	8841597	8842042	0	1	445	0
chr12	8849694	8850126	H1_polyA+.39738	0	.	8849694	8850126	0	1	432	0
chr12	8852318	8864939	H1_polyA+.39740	0	+	8852318	8864939	0	3	62,148,231	0,11239,12390
chr12	8862297	8864134	H1_polyA+.39741	0	.	8862297	8864134	0	1	1837	0
chr12	8941063	8941763	MeI_Garraway.6012	0	.	8941063	8941763	0	1	700	0
chr12	8941065	8941901	H1_polyA+.39801	0	.	8941065	8941901	0	1	836	0
chr12	8942662	8944971	H1_polyA+.39802	0	.	8942662	8944971	0	1	2309	0
chr12	8946282	8951623	H1_polyA+.39804	0	.	8946282	8951623	0	1	5341	0
chr12	8953709	8954371	H1_polyA+.39806	0	.	8953709	8954371	0	1	662	0
chr12	9077085	9077814	H1_polyA+.39837	0	.	9077085	9077814	0	1	729	0
chr12	9077294	9078223	CD4_Plagnol_activated.21322	0	.	9077294	9078223	0	1	929	0
chr12	9082407	9082714	CD4_Plagnol_activated.21324	0	.	9082407	9082714	0	1	307	0
chr12	9357233	9364528	H9_polyA+.15409	0	-	9357233	9364528	0	3	345,321,167	0,5687,7128
chr12	9361896	9364544	HepG2_Caltech_ENCODE.12204	0	.	9361896	9364544	0	1	2648	0
chr12	9362235	9364513	H1_polyA+.38942	0	.	9362235	9364513	0	1	2278	0
chr12	9362404	9363644	H9_polyA+.15407	0	.	9362404	9363644	0	1	1240	0
chr12	9362683	9363756	melanoma_Garraway_short_term_cultures.22496	0	.	9362683	9363756	0	1	1073	0
chr12	9362776	9363378	HeLa_polyA+_Chen.12368	0	.	9362776	9363378	0	1	602	0
chr12	9367081	9371486	HepG2_Caltech_ENCODE.12213	0	.	9367081	9371486	0	1	4405	0
chr12	9368079	9380747	H1_polyA+.38929	0	.	9368079	9380747	0	1	12668	0
chr12	9371486	9380477	HepG2_Caltech_ENCODE.12205	0	.	9371486	9380477	0	1	8991	0
chr12	9372088	9373494	H9_polyA+.15414	0	.	9372088	9373494	0	1	1406	0
chr12	9372300	9373192	B_cells_Cheung.64818	0	.	9372300	9373192	0	1	892	0
chr12	9374856	9375365	H9_polyA+.15404	0	.	9374856	9375365	0	1	509	0
chr12	9375642	9376687	H9_polyA+.15405	0	.	9375642	9376687	0	1	1045	0
chr12	9376951	9380299	melanoma_Garraway_short_term_cultures.22500	0	.	9376951	9380299	0	1	3348	0
chr12	9378464	9379012	MeWo_Garraway.11936	0	.	9378464	9379012	0	1	548	0
chr12	9379338	9380256	B_Cells_Pritchard.1129527	0	.	9379338	9380256	0	1	918	0
chr12	9379629	9379960	H9_polyA+.15416	0	.	9379629	9379960	0	1	331	0
chr12	9382789	9385070	H1_polyA+.38949	0	+	9382789	9385070	0	2	1758,147	0,2134
chr12	9382789	9385070	H1_polyA+.38948	0	.	9382789	9385070	0	1	2281	0
chr12	9383154	9383990	HepG2_Caltech_ENCODE.12215	0	.	9383154	9383990	0	1	836	0
chr12	9383175	9384014	melanoma_Garraway_short_term_cultures.22503	0	.	9383175	9384014	0	1	839	0
chr12	9392518	9398737	H1_polyA+.38951	0	.	9392518	9398737	0	1	6219	0
chr12	9392870	9394775	HepG2_Caltech_ENCODE.12220	0	.	9392870	9394775	0	1	1905	0
chr12	9393743	9394980	melanoma_Garraway_short_term_cultures.22505	0	.	9393743	9394980	0	1	1237	0
chr12	9395109	9398079	melanoma_Garraway_short_term_cultures.22506	0	.	9395109	9398079	0	1	2970	0
chr12	9397059	9398087	MIP101.22992	0	.	9397059	9398087	0	1	1028	0
chr12	9403523	9405519	melanoma_Garraway_short_term_cultures.22508	0	.	9403523	9405519	0	1	1996	0
chr12	9403795	9406073	H1_polyA+.38954	0	.	9403795	9406073	0	1	2278	0
chr12	9406180	9410806	H1_polyA+.38955	0	.	9406180	9410806	0	1	4626	0
chr12	9414209	9419994	H1_polyA+.38957	0	+	9414209	9419994	0	2	1441,274	0,5511
chr12	9414209	9415744	H1_polyA+.38958	0	.	9414209	9415744	0	1	1535	0
chr12	9414335	9416392	melanoma_Garraway_short_term_cultures.22513	0	.	9414335	9416392	0	1	2057	0
chr12	9416277	9416933	H1_polyA+.38960	0	.	9416277	9416933	0	1	656	0
chr12	9416518	9417011	melanoma_Garraway_short_term_cultures.22514	0	.	9416518	9417011	0	1	493	0
chr12	9417723	9418701	HepG2_Caltech_ENCODE.12227	0	.	9417723	9418701	0	1	978	0
chr12	9418440	9419921	MIP101.22995	0	.	9418440	9419921	0	1	1481	0
chr12	9419300	9420337	B_Cells_Pritchard.1129699	0	.	9419300	9420337	0	1	1037	0
chr12	9425073	9426376	melanoma_Garraway_short_term_cultures.22516	0	.	9425073	9426376	0	1	1303	0
chr12	9430201	9434024	melanoma_Garraway_short_term_cultures.22515	0	.	9430201	9434024	0	1	3823	0
chr12	9433181	9434144	H1_polyA+.38963	0	.	9433181	9434144	0	1	963	0
chr12	9446283	9451474	melanoma_Garraway_short_term_cultures.22529	0	-	9446283	9451474	0	2	133,1304	0,3887
chr12	9447166	9447487	B_cells_Cheung.64831	0	.	9447166	9447487	0	1	321	0
chr12	9447757	9449122	melanoma_Garraway_short_term_cultures.22531	0	.	9447757	9449122	0	1	1365	0
chr12	9447759	9449111	B_cells_Cheung.64832	0	.	9447759	9449111	0	1	1352	0
chr12	9447866	9457591	prostate_carcinoma.33955	0	+	9447866	9457591	0	2	234,95	0,9630
chr12	9448049	9449009	HepG2_Caltech_ENCODE.12232	0	.	9448049	9449009	0	1	960	0
chr12	9449794	9451002	B_cells_Cheung.64833	0	.	9449794	9451002	0	1	1208	0
chr12	9449951	9450377	H9_polyA+.15418	0	.	9449951	9450377	0	1	426	0
chr12	9450541	9450994	K562.15518	0	.	9450541	9450994	0	1	453	0
chr12	9450631	9450987	A549_Myers.26324	0	.	9450631	9450987	0	1	356	0
chr12	9455582	9458856	K562.15516	0	.	9455582	9458856	0	1	3274	0
chr12	9690742	9691824	B_cells_Cheung.64885	0	.	9690742	9691824	0	1	1082	0
chr12	9746656	9747191	CD4_Plagnol_resting.21046	0	.	9746656	9747191	0	1	535	0
chr12	9748109	9748953	B_cells_Cheung.64902	0	.	9748109	9748953	0	1	844	0
chr12	9749831	9750955	B_cells_Cheung.64903	0	.	9749831	9750955	0	3	498,206,201	0,601,923
chr12	9751258	9756220	B_cells_Cheung.64904	0	.	9751258	9756220	0	1	4962	0
chr12	9751306	9751881	CD4_Plagnol_resting.21048	0	.	9751306	9751881	0	1	575	0
chr12	9751574	9752068	CD4_Snyder.25440	0	.	9751574	9752068	0	1	494	0
chr12	9755516	9755993	CD4_Snyder.25445	0	.	9755516	9755993	0	1	477	0
chr12	9781835	9783034	B_Cells_Pritchard.1130499	0	+	9781835	9783034	0	2	430,144	0,1055
chr12	9785753	9786671	CD4_Snyder.25454	0	.	9785753	9786671	0	1	918	0
chr12	9792915	9793784	B_cells_Cheung.64908	0	.	9792915	9793784	0	1	869	0
chr12	9794201	9794948	K562.15524	0	.	9794201	9794948	0	1	747	0
chr12	9857596	9857914	B_cells_Cheung.64918	0	.	9857596	9857914	0	1	318	0
chr12	9857890	9858465	A549_Myers.26349	0	.	9857890	9858465	0	1	575	0
chr12	9863753	9864607	B_cells_Cheung.64921	0	.	9863753	9864607	0	1	854	0
chr12	9864351	9867282	MIP101.23016	0	.	9864351	9867282	0	1	2931	0
chr12	9864678	9866120	B_cells_Cheung.64922	0	.	9864678	9866120	0	1	1442	0
chr12	9866761	9868045	B_cells_Cheung.64924	0	.	9866761	9868045	0	1	1284	0
chr12	9867349	9868139	MIP101.23017	0	.	9867349	9868139	0	1	790	0
chr12	9868106	9868815	B_cells_Cheung.64925	0	.	9868106	9868815	0	1	709	0
chr12	9868189	9868808	K562.15527	0	.	9868189	9868808	0	1	619	0
chr12	10197253	10198052	A549_Myers.26355	0	.	10197253	10198052	0	1	799	0
chr12	10197296	10198071	B_Cells_Pritchard.1131569	0	.	10197296	10198071	0	1	775	0
chr12	10608989	10609684	REMC_MyoepithelialBreast.32755	0	.	10608989	10609684	0	1	695	0
chr12	10609005	10609954	REMC_LuminalBreast.35008	0	.	10609005	10609954	0	1	949	0
chr12	10616041	10616460	REMC_LuminalBreast.35011	0	.	10616041	10616460	0	1	419	0
chr12	10624938	10626237	H1_polyA+.39064	0	.	10624938	10626237	0	1	1299	0
chr12	10625454	10625761	prostate_carcinoma.34072	0	.	10625454	10625761	0	1	307	0
chr12	10628348	10629517	REMC_MyoepithelialBreast.32760	0	.	10628348	10629517	0	1	1169	0
chr12	10719671	10725316	REMC_LuminalBreast.35038	0	.	10719671	10725316	0	1	5645	0
chr12	10719878	10725288	REMC_BreastStem.17991	0	-	10719878	10725288	0	2	2228,1457	0,3953
chr12	10725442	10738008	REMC_MyoepithelialBreast.33437	0	.	10725442	10738008	0	1	12566	0
chr12	11450586	11451405	REMC_LuminalBreast.35225	0	.	11450586	11451405	0	1	819	0
chr12	11472088	11479584	REMC_LuminalBreast.35238	0	.	11472088	11479584	0	1	7496	0
chr12	11474437	11479359	Rinn_00021291	0	-	11474437	11479359	0	3	228,82,168	0,1244,4754
chr12	11479684	11481904	REMC_LuminalBreast.35239	0	.	11479684	11481904	0	1	2220	0
chr12	11479965	11480542	B_cells_Cheung.65198	0	.	11479965	11480542	0	1	577	0
chr12	11482875	11491119	REMC_LuminalBreast.35241	0	.	11482875	11491119	0	1	8244	0
chr12	11483849	11487906	REMC_MyoepithelialBreast.32920	0	.	11483849	11487906	0	1	4057	0
chr12	11503217	11505982	B_Cells_Pritchard.1134807	0	.	11503217	11505982	0	1	2765	0
chr12	11503236	11503788	REMC_LuminalBreast.35243	0	.	11503236	11503788	0	1	552	0
chr12	11503247	11506028	B_cells_Cheung.65215	0	.	11503247	11506028	0	1	2781	0
chr12	11510592	11511392	REMC_LuminalBreast.35246	0	.	11510592	11511392	0	1	800	0
chr12	11513332	11522771	REMC_LuminalBreast.35248	0	.	11513332	11522771	0	1	9439	0
chr12	11514051	11517455	REMC_MyoepithelialBreast.32931	0	.	11514051	11517455	0	1	3404	0
chr12	11540294	11558612	B_Cells_Pritchard.1135031	0	-	11540294	11558612	0	3	66,3357,1743	0,3852,16575
chr12	11543762	11558977	B_Cells_Pritchard.1135029	0	+	11543762	11558977	0	3	540,2870,2072	0,545,13143
chr12	11544131	11545557	B_cells_Cheung.65219	0	.	11544131	11545557	0	1	1426	0
chr12	11544242	11545575	brain_AmbionMAQC.14993	0	.	11544242	11545575	0	1	1333	0
chr12	11544569	11545568	H1_polyA+.39275	0	.	11544569	11545568	0	1	999	0
chr12	11544733	11545214	A549_Myers.26408	0	.	11544733	11545214	0	1	481	0
chr12	11544881	11554793	REMC_LuminalBreast.35257	0	.	11544881	11554793	0	1	9912	0
chr12	11545112	11545849	ZR751_Thompson.8228	0	.	11545112	11545849	0	1	737	0
chr12	11545641	11545983	BT474_Burge_Thompson.11295	0	.	11545641	11545983	0	1	342	0
chr12	11548297	11549542	REMC_MyoepithelialBreast.32943	0	.	11548297	11549542	0	1	1245	0
chr12	11552072	11553156	B_cells_Cheung.65224	0	.	11552072	11553156	0	1	1084	0
chr12	11552425	11553245	B_Cells_Pritchard.1135081	0	-	11552425	11553245	0	1	820	0
chr12	11552707	11553435	REMC_MyoepithelialBreast.32946	0	.	11552707	11553435	0	1	728	0
chr12	11572105	11573837	REMC_LuminalBreast.35264	0	.	11572105	11573837	0	1	1732	0
chr12	11572225	11573324	REMC_MyoepithelialBreast.32953	0	.	11572225	11573324	0	1	1099	0
chr12	11572559	11573521	B_Cells_Pritchard.1134973	0	.	11572559	11573521	0	1	962	0
chr12	11580085	11583370	REMC_LuminalBreast.35268	0	.	11580085	11583370	0	1	3285	0
chr12	11588113	11588656	B_cells_Cheung.65237	0	.	11588113	11588656	0	1	543	0
chr12	11592230	11608598	ENST00000499291	0	+	11592230	11608598	0	8	331,132,114,117,222,1962,92,697	0,1560,4550,5536,5819,7225,11261,15671
chr12	11592230	11608602	NR_033890	0	+	11592230	11608602	0	8	331,132,114,117,222,1962,92,701	0,1560,4550,5536,5819,7225,11261,15671
chr12	11592537	11593002	B_cells_Cheung.65239	0	.	11592537	11593002	0	1	465	0
chr12	11592568	11593016	B_Cells_Pritchard.1135109	0	.	11592568	11593016	0	1	448	0
chr12	11595589	11596630	REMC_LuminalBreast.35272	0	.	11595589	11596630	0	1	1041	0
chr12	11596312	11608378	B_cells_Cheung.65235	0	+	11596312	11608378	0	4	1959,2081,334,477	0,3024,7179,11589
chr12	11596775	11608565	B_Cells_Pritchard.1135261	0	+	11596775	11608565	0	5	1108,305,1962,92,664	0,1264,2680,6716,11126
chr12	11596783	11608915	REMC_LuminalBreast.35273	0	+	11596783	11608915	0	4	1488,1987,92,1014	0,2672,6708,11118
chr12	11597330	11603679	REMC_MyoepithelialBreast.32960	0	+	11597330	11603679	0	3	941,2629,188	0,2125,6161
chr12	11607231	11607875	REMC_MyoepithelialBreast.32963	0	.	11607231	11607875	0	1	644	0
chr12	11607281	11608755	H1_polyA+.39283	0	.	11607281	11608755	0	1	1474	0
chr12	11611517	11617178	REMC_LuminalBreast.35277	0	.	11611517	11617178	0	1	5661	0
chr12	11612628	11614180	B_cells_Cheung.65249	0	.	11612628	11614180	0	1	1552	0
chr12	11621608	11625878	B_cells_Cheung.65256	0	.	11621608	11625878	0	1	4270	0
chr12	11623481	11625341	REMC_LuminalBreast.35280	0	.	11623481	11625341	0	1	1860	0
chr12	11624110	11625212	H1_polyA+.39285	0	.	11624110	11625212	0	1	1102	0
chr12	11624343	11625840	B_Cells_Pritchard.1135341	0	-	11624343	11625840	0	2	803,319	0,1178
chr12	11629927	11632130	REMC_LuminalBreast.35284	0	.	11629927	11632130	0	1	2203	0
chr12	11630386	11632203	H1_polyA+.39286	0	.	11630386	11632203	0	1	1817	0
chr12	11631153	11633908	B_cells_Cheung.65260	0	.	11631153	11633908	0	1	2755	0
chr12	11635903	11637877	B_cells_Cheung.65262	0	.	11635903	11637877	0	1	1974	0
chr12	11636192	11637537	REMC_LuminalBreast.35287	0	.	11636192	11637537	0	1	1345	0
chr12	11637944	11641295	B_cells_Cheung.65263	0	.	11637944	11641295	0	1	3351	0
chr12	11643062	11643872	REMC_LuminalBreast.35290	0	.	11643062	11643872	0	1	810	0
chr12	11671050	11672246	H1_polyA+.39305	0	.	11671050	11672246	0	1	1196	0
chr12	11684370	11686094	H1_polyA+.39313	0	.	11684370	11686094	0	1	1724	0
chr12	11684956	11685563	B_cells_Cheung.65297	0	.	11684956	11685563	0	1	607	0
chr12	11941651	11943176	melanoma_Garraway_short_term_cultures.22695	0	.	11941651	11943176	0	1	1525	0
chr12	11947118	11948906	REMC_BreastStem.18055	0	.	11947118	11948906	0	1	1788	0
chr12	11947216	11949524	REMC_MyoepithelialBreast.32975	0	.	11947216	11949524	0	1	2308	0
chr12	11956040	11956363	REMC_LuminalBreast.35538	0	.	11956040	11956363	0	1	323	0
chr12	11956790	11957177	REMC_MyoepithelialBreast.32979	0	.	11956790	11957177	0	1	387	0
chr12	11963325	11971350	REMC_LuminalBreast.35541	0	.	11963325	11971350	0	1	8025	0
chr12	11963363	11968163	REMC_MyoepithelialBreast.32982	0	.	11963363	11968163	0	1	4800	0
chr12	11973178	11976342	REMC_MyoepithelialBreast.32987	0	.	11973178	11976342	0	1	3164	0
chr12	11982907	11993864	REMC_LuminalBreast.35543	0	.	11982907	11993864	0	1	10957	0
chr12	12001895	12015519	REMC_LuminalBreast.35546	0	+	12001895	12015519	0	4	834,454,125,10675	0,846,1543,2949
chr12	12005956	12006329	B_Cells_Pritchard.1136027	0	.	12005956	12006329	0	1	373	0
chr12	12010447	12011144	REMC_MyoepithelialBreast.32993	0	.	12010447	12011144	0	1	697	0
chr12	12010457	12011063	REMC_BreastStem.18042	0	.	12010457	12011063	0	1	606	0
chr12	12048508	12049510	melanoma_Garraway_short_term_cultures.22697	0	.	12048508	12049510	0	1	1002	0
chr12	12049336	12049753	B_Cells_Pritchard.1136189	0	.	12049336	12049753	0	1	417	0
chr12	12053363	12053793	B_cells_Cheung.65334	0	.	12053363	12053793	0	1	430	0
chr12	12068840	12069816	REMC_LuminalBreast.35309	0	.	12068840	12069816	0	1	976	0
chr12	12069502	12069807	B_Cells_Pritchard.1136277	0	.	12069502	12069807	0	1	305	0
chr12	12076023	12079167	REMC_LuminalBreast.35310	0	.	12076023	12079167	0	1	3144	0
chr12	12076632	12079095	B_cells_Cheung.65336	0	.	12076632	12079095	0	1	2463	0
chr12	12091346	12092716	REMC_LuminalBreast.35312	0	.	12091346	12092716	0	1	1370	0
chr12	12091683	12092604	H1_polyA+.39350	0	.	12091683	12092604	0	1	921	0
chr12	12091864	12092743	BT474_Burge_Thompson.11301	0	.	12091864	12092743	0	1	879	0
chr12	12354238	12354847	prostate_carcinoma.34251	0	.	12354238	12354847	0	1	609	0
chr12	12366997	12367418	H1_polyA+.39415	0	.	12366997	12367418	0	1	421	0
chr12	12841741	12843770	B_cells_Cheung.65648	0	.	12841741	12843770	0	1	2029	0
chr12	12843812	12844151	B_Cells_Pritchard.1138271	0	-	12843812	12844151	0	1	339	0
chr12	12846383	12847030	B_Cells_Pritchard.1138279	0	-	12846383	12847030	0	1	647	0
chr12	12846387	12847006	MIP101.23417	0	.	12846387	12847006	0	1	619	0
chr12	12846411	12847032	B_cells_Cheung.65652	0	.	12846411	12847032	0	1	621	0
chr12	12849829	12850670	B_cells_Cheung.65655	0	.	12849829	12850670	0	1	841	0
chr12	12875484	12876228	HepG2_Caltech_ENCODE.12359	0	.	12875484	12876228	0	1	744	0
chr12	12875610	12876327	B_cells_Cheung.65665	0	.	12875610	12876327	0	1	717	0
chr12	12875640	12876167	CD4_Plagnol_resting.20914	0	.	12875640	12876167	0	1	527	0
chr12	12875692	12876112	CD4_Plagnol_activated.21586	0	.	12875692	12876112	0	1	420	0
chr12	12876436	12882833	REMC_MyoepithelialBreast.33231	0	.	12876436	12882833	0	1	6397	0
chr12	12880359	12882734	REMC_LuminalBreast.35448	0	.	12880359	12882734	0	1	2375	0
chr12	12880403	12882853	B_cells_Cheung.65669	0	.	12880403	12882853	0	1	2450	0
chr12	12880431	12882400	melanoma_Garraway_short_term_cultures.22804	0	.	12880431	12882400	0	1	1969	0
chr12	12888166	12888684	B_cells_Cheung.65673	0	.	12888166	12888684	0	1	518	0
chr12	12888919	12891155	REMC_BreastStem.18076	0	.	12888919	12891155	0	1	2236	0
chr12	12888947	12891269	REMC_MyoepithelialBreast.33234	0	.	12888947	12891269	0	1	2322	0
chr12	12888948	12891864	REMC_LuminalBreast.35451	0	.	12888948	12891864	0	1	2916	0
chr12	12889066	12889747	B_cells_Cheung.65674	0	.	12889066	12889747	0	1	681	0
chr12	12891402	12892067	REMC_MyoepithelialBreast.33235	0	.	12891402	12892067	0	1	665	0
chr12	12892311	12894487	REMC_MyoepithelialBreast.33236	0	.	12892311	12894487	0	1	2176	0
chr12	12899038	12901111	REMC_BreastStem.18080	0	.	12899038	12901111	0	1	2073	0
chr12	12899319	12900981	REMC_MyoepithelialBreast.33233	0	.	12899319	12900981	0	1	1662	0
chr12	12899446	12900730	melanoma_Garraway_short_term_cultures.22812	0	.	12899446	12900730	0	1	1284	0
chr12	12899741	12900984	H1_polyA+.39515	0	.	12899741	12900984	0	1	1243	0
chr12	12900073	12900951	B_cells_Cheung.65687	0	.	12900073	12900951	0	1	878	0
chr12	12904429	12906513	REMC_BreastStem.18082	0	.	12904429	12906513	0	1	2084	0
chr12	12904499	12906508	REMC_LuminalBreast.35456	0	.	12904499	12906508	0	1	2009	0
chr12	12904574	12906511	REMC_MyoepithelialBreast.33240	0	.	12904574	12906511	0	1	1937	0
chr12	12906759	12908935	REMC_LuminalBreast.35457	0	.	12906759	12908935	0	1	2176	0
chr12	12907730	12908961	REMC_BreastStem.18084	0	.	12907730	12908961	0	1	1231	0
chr12	12909217	12911324	REMC_BreastStem.18085	0	.	12909217	12911324	0	1	2107	0
chr12	12910273	12911321	melanoma_Garraway_short_term_cultures.22815	0	.	12910273	12911321	0	1	1048	0
chr12	12914665	12917582	B_cells_Cheung.65703	0	.	12914665	12917582	0	1	2917	0
chr12	12917526	12918965	melanoma_Garraway_short_term_cultures.22819	0	.	12917526	12918965	0	1	1439	0
chr12	12917684	12918985	B_cells_Cheung.65704	0	.	12917684	12918985	0	1	1301	0
chr12	12918903	12919487	MDAMB231_Thompson.7691	0	.	12918903	12919487	0	1	584	0
chr12	12922467	12923373	REMC_MyoepithelialBreast.33247	0	.	12922467	12923373	0	1	906	0
chr12	12926635	12927944	REMC_MyoepithelialBreast.33249	0	.	12926635	12927944	0	1	1309	0
chr12	12960120	12960640	HeLa_Bartel_WT_32hr.4502	0	.	12960120	12960640	0	1	520	0
chr12	12960290	12962121	HME_Burge.14267	0	.	12960290	12962121	0	1	1831	0
chr12	12961200	12966402	liver_polyA+.46478	0	+	12961200	12966402	0	2	379,64	0,5138
chr12	12961200	12961750	liver_polyA+.46477	0	.	12961200	12961750	0	1	550	0
chr12	12967063	12967560	melanoma_Garraway_short_term_cultures.22840	0	.	12967063	12967560	0	1	497	0
chr12	12968454	12968844	HeLa_polyA+_Chen.12550	0	.	12968454	12968844	0	1	390	0
chr12	12968548	12968853	prostate_carcinoma.34353	0	.	12968548	12968853	0	1	305	0
chr12	12997390	13000348	REMC_MyoepithelialBreast.33091	0	.	12997390	13000348	0	1	2958	0
chr12	12997651	13000066	MIP101.23446	0	.	12997651	13000066	0	1	2415	0
chr12	12999314	13000069	prostate_carcinoma.34363	0	.	12999314	13000069	0	1	755	0
chr12	12999338	13000086	prostate_normal.20087	0	.	12999338	13000086	0	1	748	0
chr12	13008290	13009665	prostate_carcinoma.34368	0	.	13008290	13009665	0	1	1375	0
chr12	13008508	13009404	MIP101.23451	0	.	13008508	13009404	0	1	896	0
chr12	13008632	13009883	REMC_MyoepithelialBreast.33100	0	.	13008632	13009883	0	1	1251	0
chr12	13009813	13013942	REMC_BreastStem.19229	0	.	13009813	13013942	0	1	4129	0
chr12	13010051	13011052	H1_polyA+.39537	0	.	13010051	13011052	0	1	1001	0
chr12	13011423	13013415	B_cells_Cheung.65736	0	.	13011423	13013415	0	1	1992	0
chr12	13011484	13012126	MIP101.23452	0	.	13011484	13012126	0	1	642	0
chr12	13011718	13012590	prostate_carcinoma.34370	0	.	13011718	13012590	0	1	872	0
chr12	13179890	13180421	BT474_Burge_Thompson.11347	0	.	13179890	13180421	0	1	531	0
chr12	13184153	13184815	H1_polyA+.39553	0	.	13184153	13184815	0	1	662	0
chr12	13207094	13208499	REMC_LuminalBreast.35464	0	.	13207094	13208499	0	1	1405	0
chr12	13207701	13208688	melanoma_Garraway_short_term_cultures.22861	0	.	13207701	13208688	0	1	987	0
chr12	13281237	13282343	REMC_MyoepithelialBreast.33161	0	.	13281237	13282343	0	1	1106	0
chr12	13285198	13304162	REMC_LuminalBreast.35485	0	.	13285198	13304162	0	1	18964	0
chr12	13288208	13289342	REMC_BreastStem.18100	0	.	13288208	13289342	0	1	1134	0
chr12	13289472	13299733	REMC_BreastStem.18101	0	.	13289472	13299733	0	1	10261	0
chr12	13306218	13306902	REMC_BreastStem.18103	0	.	13306218	13306902	0	1	684	0
chr12	13306496	13306933	REMC_LuminalBreast.35489	0	.	13306496	13306933	0	1	437	0
chr12	13307253	13307736	REMC_LuminalBreast.35490	0	.	13307253	13307736	0	1	483	0
chr12	13307357	13307743	REMC_BreastStem.18104	0	.	13307357	13307743	0	1	386	0
chr12	13309384	13331730	REMC_LuminalBreast.35493	0	+	13309384	13331730	0	2	11855,2679	0,19667
chr12	13309384	13331730	REMC_LuminalBreast.35494	0	.	13309384	13331730	0	1	22346	0
chr12	13309649	13317771	REMC_BreastStem.18106	0	.	13309649	13317771	0	1	8122	0
chr12	13314820	13317692	REMC_MyoepithelialBreast.33176	0	.	13314820	13317692	0	1	2872	0
chr12	13322483	13323207	A549_Myers.26592	0	.	13322483	13323207	0	1	724	0
chr12	13323643	13328001	REMC_BreastStem.18110	0	.	13323643	13328001	0	1	4358	0
chr12	13337938	13342272	REMC_LuminalBreast.35496	0	.	13337938	13342272	0	1	4334	0
chr12	13342350	13346662	REMC_LuminalBreast.35497	0	.	13342350	13346662	0	1	4312	0
chr12	13346719	13348478	REMC_LuminalBreast.35498	0	.	13346719	13348478	0	1	1759	0
chr12	13351808	13362388	REMC_LuminalBreast.35500	0	.	13351808	13362388	0	1	10580	0
chr12	13362550	13364734	REMC_LuminalBreast.35501	0	.	13362550	13364734	0	1	2184	0
chr12	13371429	13376659	REMC_LuminalBreast.35504	0	.	13371429	13376659	0	1	5230	0
chr12	13378263	13380040	REMC_LuminalBreast.35506	0	.	13378263	13380040	0	1	1777	0
chr12	13385266	13388380	REMC_LuminalBreast.35511	0	.	13385266	13388380	0	1	3114	0
chr12	13394837	13395904	REMC_LuminalBreast.35514	0	.	13394837	13395904	0	1	1067	0
chr12	13464359	13465225	REMC_BreastStem.18117	0	.	13464359	13465225	0	1	866	0
chr12	13584448	13591972	brain_AmbionMAQC.15075	0	.	13584448	13591972	0	1	7524	0
chr12	13584738	13586371	A549_Myers.26598	0	.	13584738	13586371	0	1	1633	0
chr12	13584856	13586206	H1_polyA+.39557	0	.	13584856	13586206	0	1	1350	0
chr12	13584890	13595176	REMC_LuminalBreast.35520	0	.	13584890	13595176	0	1	10286	0
chr12	13584968	13586018	melanoma_Garraway_short_term_cultures.22876	0	.	13584968	13586018	0	1	1050	0
chr12	13586315	13588905	H1_polyA+.39558	0	.	13586315	13588905	0	1	2590	0
chr12	13586469	13589976	A549_Myers.26599	0	.	13586469	13589976	0	1	3507	0
chr12	13592196	13597274	HIT000045313	0	+	13592196	13597274	0	2	712,2390	0,2688
chr12	13592216	13593879	brain_AmbionMAQC.15066	0	.	13592216	13593879	0	1	1663	0
chr12	13594427	13594766	A549_Myers.26607	0	.	13594427	13594766	0	1	339	0
chr12	14299112	14299570	B_Cells_Pritchard.1141799	0	.	14299112	14299570	0	1	458	0
chr12	14304788	14305271	A549_Myers.26653	0	.	14304788	14305271	0	1	483	0
chr12	14310412	14310795	B_cells_Cheung.65767	0	.	14310412	14310795	0	1	383	0
chr12	14310907	14311239	B_cells_Cheung.65768	0	.	14310907	14311239	0	1	332	0
chr12	14317781	14318237	B_Cells_Pritchard.1141889	0	.	14317781	14318237	0	1	456	0
chr12	14344683	14345608	B_cells_Cheung.65788	0	.	14344683	14345608	0	1	925	0
chr12	14346485	14346939	B_cells_Cheung.65790	0	.	14346485	14346939	0	1	454	0
chr12	14379928	14381854	B_Cells_Pritchard.1142143	0	.	14379928	14381854	0	1	1926	0
chr12	14379931	14381199	B_cells_Cheung.65812	0	.	14379931	14381199	0	1	1268	0
chr12	14394791	14396044	H1_polyA+.39577	0	.	14394791	14396044	0	1	1253	0
chr12	14399671	14400735	H1_polyA+.39579	0	.	14399671	14400735	0	1	1064	0
chr12	14399712	14400752	B_cells_Cheung.65818	0	.	14399712	14400752	0	1	1040	0
chr12	14399723	14400587	B_Cells_Pritchard.1142189	0	.	14399723	14400587	0	1	864	0
chr12	14742657	14749767	H1_polyA+.39627	0	.	14742657	14749767	0	1	7110	0
chr12	14744848	14745528	REMC_MyoepithelialBreast.33186	0	.	14744848	14745528	0	1	680	0
chr12	14744888	14746171	H9_polyA+.15583	0	.	14744888	14746171	0	1	1283	0
chr12	14749949	14754081	H1_polyA+.39626	0	-	14749949	14754081	0	2	334,434	0,3698
chr12	14751291	14751835	H9_polyA+.15586	0	.	14751291	14751835	0	1	544	0
chr12	14753681	14754104	H9_polyA+.15591	0	.	14753681	14754104	0	1	423	0
chr12	14758263	14758761	H1_rRNA-depleted_UCSD_REMC.30453	0	.	14758263	14758761	0	1	498	0
chr12	14762728	14764158	REMC_MyoepithelialBreast.33195	0	.	14762728	14764158	0	1	1430	0
chr12	14769501	14772554	H1_polyA+.39638	0	.	14769501	14772554	0	1	3053	0
chr12	14770604	14772528	REMC_MyoepithelialBreast.33198	0	.	14770604	14772528	0	1	1924	0
chr12	14771055	14772523	REMC_LuminalBreast.35562	0	.	14771055	14772523	0	1	1468	0
chr12	14771108	14772603	REMC_BreastStem.18127	0	.	14771108	14772603	0	1	1495	0
chr12	14776232	14790054	REMC_LuminalBreast.35564	0	.	14776232	14790054	0	1	13822	0
chr12	14781189	14790650	REMC_MyoepithelialBreast.33203	0	.	14781189	14790650	0	1	9461	0
chr12	14781219	14802079	REMC_BreastStem.18135	0	+	14781219	14802079	0	2	1970,428	0,20432
chr12	14781377	14790054	REMC_LuminalBreast.35565	0	-	14781377	14790054	0	2	31,7151	0,1526
chr12	14784436	14787352	B_cells_Cheung.65911	0	.	14784436	14787352	0	1	2916	0
chr12	14785023	14790240	H1_polyA+.39641	0	.	14785023	14790240	0	1	5217	0
chr12	14785068	14790558	REMC_BreastStem.18136	0	.	14785068	14790558	0	1	5490	0
chr12	14785114	14802630	B_Cells_Pritchard.1143311	0	-	14785114	14802630	0	5	508,114,48,685,351	0,909,9748,14631,17165
chr12	14786242	14805206	MIP101.23372	0	-	14786242	14805206	0	2	992,74	0,18890
chr12	14786389	14787392	melanoma_Garraway_short_term_cultures.22894	0	.	14786389	14787392	0	1	1003	0
chr12	14798454	14810234	REMC_MyoepithelialBreast.33205	0	.	14798454	14810234	0	1	11780	0
chr12	14799610	14810234	REMC_LuminalBreast.35574	0	.	14799610	14810234	0	1	10624	0
chr12	14803086	14808633	REMC_BreastStem.18142	0	.	14803086	14808633	0	1	5547	0
chr12	14804566	14805270	H1_polyA+.39648	0	.	14804566	14805270	0	1	704	0
chr12	14805862	14810172	H1_polyA+.39649	0	.	14805862	14810172	0	1	4310	0
chr12	14808554	14810208	B_cells_Cheung.65935	0	.	14808554	14810208	0	1	1654	0
chr12	14808563	14810168	MCF7_Burge_Thompson.10272	0	.	14808563	14810168	0	1	1605	0
chr12	14808704	14810233	REMC_BreastStem.18143	0	.	14808704	14810233	0	1	1529	0
chr12	15299386	15299980	H1_polyA+.39660	0	.	15299386	15299980	0	1	594	0
chr12	15299405	15299979	K562.15680	0	.	15299405	15299979	0	1	574	0
chr12	15299449	15300002	HepG2_Caltech_ENCODE.12398	0	.	15299449	15300002	0	1	553	0
chr12	15299450	15299975	H9_polyA+.15605	0	.	15299450	15299975	0	1	525	0
chr12	15299461	15299976	REMC_LuminalBreast.35628	0	.	15299461	15299976	0	1	515	0
chr12	15299473	15299977	melanoma_Garraway_short_term_cultures.22915	0	.	15299473	15299977	0	1	504	0
chr12	15299475	15299973	MIP101.23385	0	.	15299475	15299973	0	1	498	0
chr12	15299478	15299979	MCF7_Burge_Thompson.10190	0	.	15299478	15299979	0	1	501	0
chr12	15299480	15299967	MeWo_Garraway.12072	0	.	15299480	15299967	0	1	487	0
chr12	15299482	15299971	T47D_Burge_Thompson.9854	0	.	15299482	15299971	0	1	489	0
chr12	15354846	15356582	K562.15681	0	.	15354846	15356582	0	1	1736	0
chr12	15359789	15360814	K562.15685	0	.	15359789	15360814	0	1	1025	0
chr12	15360160	15360503	T47D_Burge_Thompson.9861	0	.	15360160	15360503	0	1	343	0
chr12	15650369	15651524	REMC_MyoepithelialBreast.33220	0	.	15650369	15651524	0	1	1155	0
chr12	15650672	15651267	REMC_BreastStem.18171	0	.	15650672	15651267	0	1	595	0
chr12	15654977	15661610	REMC_BreastStem.18172	0	.	15654977	15661610	0	1	6633	0
chr12	15655480	15656496	REMC_MyoepithelialBreast.33224	0	.	15655480	15656496	0	1	1016	0
chr12	16382871	16385235	REMC_LuminalBreast.35656	0	.	16382871	16385235	0	1	2364	0
chr12	16432540	16439877	REMC_LuminalBreast.35663	0	.	16432540	16439877	0	1	7337	0
chr12	16432638	16434604	H1_polyA+.39750	0	.	16432638	16434604	0	1	1966	0
chr12	16440024	16441993	REMC_LuminalBreast.35664	0	.	16440024	16441993	0	1	1969	0
chr12	16445223	16445711	B_cells_Cheung.66088	0	.	16445223	16445711	0	1	488	0
chr12	16445223	16445540	CD4_Plagnol_activated.21626	0	.	16445223	16445540	0	1	317	0
chr12	16445326	16446299	REMC_BreastStem.18190	0	.	16445326	16446299	0	1	973	0
chr12	16445785	16446299	HeLa_polyA+_Chen.12610	0	.	16445785	16446299	0	1	514	0
chr12	16445809	16446600	B_Cells_Pritchard.1147965	0	+	16445809	16446600	0	1	791	0
chr12	16454966	16458512	REMC_LuminalBreast.35668	0	.	16454966	16458512	0	1	3546	0
chr12	16461422	16470827	REMC_LuminalBreast.35671	0	.	16461422	16470827	0	1	9405	0
chr12	16468710	16470842	H1_polyA+.39757	0	.	16468710	16470842	0	1	2132	0
chr12	16469507	16470501	MIP101.23471	0	.	16469507	16470501	0	1	994	0
chr12	16475983	16477135	MIP101.23473	0	.	16475983	16477135	0	1	1152	0
chr12	16480980	16506868	REMC_LuminalBreast.35676	0	.	16480980	16506868	0	2	6896,17478	0,8410
chr12	16493671	16495057	MIP101.23478	0	.	16493671	16495057	0	1	1386	0
chr12	16526756	16569401	REMC_MyoepithelialBreast.35202	0	.	16526756	16569401	0	1	42645	0
chr12	16554336	16569376	REMC_LuminalBreast.35690	0	+	16554336	16569376	0	2	11731,2304	0,12736
chr12	16557481	16557990	A549_Myers.26760	0	.	16557481	16557990	0	1	509	0
chr12	16557690	16558723	H1_polyA+.39763	0	.	16557690	16558723	0	1	1033	0
chr12	16557749	16558213	B_cells_Cheung.66106	0	.	16557749	16558213	0	1	464	0
chr12	16558262	16558701	A549_Myers.26761	0	.	16558262	16558701	0	1	439	0
chr12	16558308	16559205	B_cells_Cheung.66107	0	.	16558308	16559205	0	1	897	0
chr12	16570403	16582803	REMC_MyoepithelialBreast.35203	0	.	16570403	16582803	0	1	12400	0
chr12	16577770	16581147	REMC_LuminalBreast.35693	0	.	16577770	16581147	0	1	3377	0
chr12	16581257	16582796	REMC_LuminalBreast.35694	0	.	16581257	16582796	0	1	1539	0
chr12	16655684	16662665	REMC_LuminalBreast.35709	0	.	16655684	16662665	0	1	6981	0
chr12	16662720	16667453	REMC_LuminalBreast.35710	0	.	16662720	16667453	0	1	4733	0
chr12	16684146	16684501	B_cells_Cheung.66288	0	.	16684146	16684501	0	1	355	0
chr12	16684156	16684686	B_Cells_Pritchard.1147829	0	.	16684156	16684686	0	1	530	0
chr12	16684468	16686549	REMC_MyoepithelialBreast.33282	0	.	16684468	16686549	0	1	2081	0
chr12	16684891	16687802	B_cells_Cheung.66262	0	.	16684891	16687802	0	1	2911	0
chr12	16686701	16693471	REMC_MyoepithelialBreast.33283	0	.	16686701	16693471	0	1	6770	0
chr12	16690760	16692559	REMC_LuminalBreast.35718	0	.	16690760	16692559	0	1	1799	0
chr12	16690792	16691733	B_cells_Cheung.66292	0	.	16690792	16691733	0	1	941	0
chr12	16693778	16707694	REMC_MyoepithelialBreast.33285	0	.	16693778	16707694	0	1	13916	0
chr12	16703932	16707963	REMC_LuminalBreast.35724	0	.	16703932	16707963	0	1	4031	0
chr12	16710762	16713343	REMC_MyoepithelialBreast.33287	0	.	16710762	16713343	0	1	2581	0
chr12	16711383	16712823	REMC_LuminalBreast.35727	0	.	16711383	16712823	0	1	1440	0
chr12	16711482	16711792	B_cells_Cheung.66316	0	.	16711482	16711792	0	1	310	0
chr12	16717167	16720793	B_cells_Cheung.66320	0	.	16717167	16720793	0	1	3626	0
chr12	16719318	16720805	B_Cells_Pritchard.1147997	0	.	16719318	16720805	0	1	1487	0
chr12	16719398	16723818	REMC_LuminalBreast.35731	0	.	16719398	16723818	0	1	4420	0
chr12	16762443	16765791	REMC_MyoepithelialBreast.33308	0	.	16762443	16765791	0	1	3348	0
chr12	16763088	16771615	REMC_LuminalBreast.35747	0	.	16763088	16771615	0	1	8527	0
chr12	16765888	16767210	REMC_MyoepithelialBreast.33309	0	.	16765888	16767210	0	1	1322	0
chr12	16766547	16767773	B_Cells_Pritchard.1148219	0	.	16766547	16767773	0	1	1226	0
chr12	16766665	16767880	B_cells_Cheung.66365	0	.	16766665	16767880	0	1	1215	0
chr12	16767697	16768367	REMC_MyoepithelialBreast.33310	0	.	16767697	16768367	0	1	670	0
chr12	16775245	16777406	REMC_MyoepithelialBreast.33314	0	.	16775245	16777406	0	1	2161	0
chr12	16775623	16776374	B_cells_Cheung.66374	0	.	16775623	16776374	0	1	751	0
chr12	16775651	16777522	REMC_LuminalBreast.35750	0	.	16775651	16777522	0	1	1871	0
chr12	16780941	16783920	REMC_LuminalBreast.35752	0	.	16780941	16783920	0	1	2979	0
chr12	16781307	16784281	REMC_MyoepithelialBreast.33316	0	.	16781307	16784281	0	1	2974	0
chr12	16781821	16784471	B_cells_Cheung.66379	0	.	16781821	16784471	0	1	2650	0
chr12	16782166	16783402	B_Cells_Pritchard.1148283	0	.	16782166	16783402	0	1	1236	0
chr12	16793788	16909424	REMC_MyoepithelialBreast.33344	0	+	16793788	16909424	0	4	289,128,90,11846	0,11354,59722,103790
chr12	16794299	16799828	REMC_MyoepithelialBreast.33346	0	.	16794299	16799828	0	1	5529	0
chr12	16805755	16807939	B_cells_Cheung.66402	0	.	16805755	16807939	0	1	2184	0
chr12	16811698	16812024	B_cells_Cheung.66408	0	.	16811698	16812024	0	1	326	0
chr12	16822625	16825835	REMC_LuminalBreast.35765	0	.	16822625	16825835	0	1	3210	0
chr12	16824051	16827229	B_cells_Cheung.66426	0	.	16824051	16827229	0	1	3178	0
chr12	16824928	16826546	REMC_MyoepithelialBreast.33357	0	.	16824928	16826546	0	1	1618	0
chr12	16835600	16836971	REMC_MyoepithelialBreast.33361	0	.	16835600	16836971	0	1	1371	0
chr12	16835987	16837003	REMC_LuminalBreast.35769	0	.	16835987	16837003	0	1	1016	0
chr12	16856170	16862758	B_cells_Cheung.66183	0	.	16856170	16862758	0	1	6588	0
chr12	16856589	16860744	REMC_LuminalBreast.35775	0	.	16856589	16860744	0	1	4155	0
chr12	16857620	16858208	B_Cells_Pritchard.1148621	0	.	16857620	16858208	0	1	588	0
chr12	16858135	16863519	REMC_MyoepithelialBreast.33375	0	.	16858135	16863519	0	1	5384	0
chr12	16860839	16864544	REMC_LuminalBreast.35776	0	.	16860839	16864544	0	1	3705	0
chr12	16862891	16864217	B_cells_Cheung.66184	0	.	16862891	16864217	0	1	1326	0
chr12	16863260	16864035	B_Cells_Pritchard.1148645	0	.	16863260	16864035	0	1	775	0
chr12	16878645	16880300	B_cells_Cheung.66193	0	.	16878645	16880300	0	1	1655	0
chr12	16897463	16909424	REMC_MyoepithelialBreast.33345	0	.	16897463	16909424	0	1	11961	0
chr12	16897544	16905108	B_Cells_Pritchard.1148851	0	-	16897544	16905108	0	2	4816,440	0,7124
chr12	16902913	16905242	B_cells_Cheung.66203	0	.	16902913	16905242	0	1	2329	0
chr12	16902961	16906413	REMC_LuminalBreast.35787	0	.	16902961	16906413	0	1	3452	0
chr12	16919515	16921643	REMC_LuminalBreast.35793	0	.	16919515	16921643	0	1	2128	0
chr12	16925140	16925742	B_Cells_Pritchard.1148865	0	.	16925140	16925742	0	1	602	0
chr12	16925588	16927725	REMC_MyoepithelialBreast.33325	0	.	16925588	16927725	0	1	2137	0
chr12	16925887	16927651	REMC_LuminalBreast.35796	0	.	16925887	16927651	0	1	1764	0
chr12	16926167	16926766	B_cells_Cheung.66223	0	.	16926167	16926766	0	1	599	0
chr12	16926226	16926745	B_Cells_Pritchard.1148869	0	.	16926226	16926745	0	1	519	0
chr12	16965779	16967268	REMC_MyoepithelialBreast.33331	0	.	16965779	16967268	0	1	1489	0
chr12	17034842	17036446	H1_polyA+.39767	0	.	17034842	17036446	0	1	1604	0
chr12	17034847	17035539	melanoma_Garraway_short_term_cultures.22967	0	.	17034847	17035539	0	1	692	0
chr12	17034864	17035847	prostate_normal.20192	0	-	17034864	17035847	0	2	142,236	0,747
chr12	17035130	17035683	B_cells_Cheung.66234	0	.	17035130	17035683	0	1	553	0
chr12	17035215	17036512	MeWo_Garraway.12103	0	.	17035215	17036512	0	1	1297	0
chr12	17035463	17035878	CD4_Plagnol_resting.21019	0	.	17035463	17035878	0	1	415	0
chr12	17035472	17035897	CD4_Plagnol_activated.21631	0	.	17035472	17035897	0	1	425	0
chr12	17035634	17036508	melanoma_Garraway_short_term_cultures.22968	0	.	17035634	17036508	0	1	874	0
chr12	17035733	17036541	B_cells_Cheung.66235	0	.	17035733	17036541	0	1	808	0
chr12	17035739	17036122	REMC_LuminalBreast.35805	0	.	17035739	17036122	0	1	383	0
chr12	17035978	17036497	CD4_Plagnol_activated.21632	0	.	17035978	17036497	0	1	519	0
chr12	17228947	17248000	A549_Myers.26794	0	-	17228947	17248000	0	2	60,265	0,18788
chr12	17482673	17482976	B_Cells_Pritchard.1150113	0	.	17482673	17482976	0	1	303	0
chr12	18140656	18140994	A549_Myers.26797	0	.	18140656	18140994	0	1	338	0
chr12	18283600	18302473	liver_polyA+.46765	0	+	18283600	18302473	0	2	57,608	0,18265
chr12	18706694	18708650	REMC_LuminalBreast.35817	0	.	18706694	18708650	0	1	1956	0
chr12	18707415	18708768	REMC_MyoepithelialBreast.33488	0	.	18707415	18708768	0	1	1353	0
chr12	18718636	18723041	REMC_MyoepithelialBreast.33492	0	.	18718636	18723041	0	1	4405	0
chr12	18721734	18723471	REMC_LuminalBreast.35821	0	.	18721734	18723471	0	1	1737	0
chr12	18723276	18724867	REMC_MyoepithelialBreast.33493	0	.	18723276	18724867	0	1	1591	0
chr12	18723573	18724729	REMC_LuminalBreast.35822	0	.	18723573	18724729	0	1	1156	0
chr12	19152102	19152414	HepG2_Caltech_ENCODE.12420	0	.	19152102	19152414	0	1	312	0
chr12	19425494	19426531	REMC_LuminalBreast.35850	0	.	19425494	19426531	0	1	1037	0
chr12	19445463	19446345	REMC_LuminalBreast.35852	0	.	19445463	19446345	0	1	882	0
chr12	19566594	19573647	B_Cells_Pritchard.1156695	0	-	19566594	19573647	0	3	803,807,805	0,2970,6248
chr12	19568282	19578447	REMC_LuminalBreast.35855	0	.	19568282	19578447	0	1	10165	0
chr12	19576398	19581657	B_cells_Cheung.66531	0	.	19576398	19581657	0	3	2584,1688,846	0,2639,4413
chr12	19578734	19580680	H1_polyA+.39908	0	.	19578734	19580680	0	1	1946	0
chr12	19579110	19592516	REMC_LuminalBreast.35857	0	.	19579110	19592516	0	1	13406	0
chr12	19579163	19579536	CD4_Plagnol_resting.21076	0	.	19579163	19579536	0	1	373	0
chr12	19579191	19580732	B_Cells_Pritchard.1153767	0	-	19579191	19580732	0	1	1541	0
chr12	19579296	19581620	REMC_MyoepithelialBreast.33633	0	.	19579296	19581620	0	1	2324	0
chr12	19579335	19598435	prostate_carcinoma.34581	0	+	19579335	19598435	0	2	148,1118	0,17982
chr12	19583310	19587662	REMC_MyoepithelialBreast.33634	0	.	19583310	19587662	0	1	4352	0
chr12	19586192	19587383	melanoma_Garraway_short_term_cultures.23042	0	.	19586192	19587383	0	1	1191	0
chr12	19586382	19587408	H1_polyA+.39911	0	.	19586382	19587408	0	1	1026	0
chr12	19589880	19592289	melanoma_Garraway_short_term_cultures.23044	0	.	19589880	19592289	0	1	2409	0
chr12	19590025	19591374	REMC_MyoepithelialBreast.33636	0	.	19590025	19591374	0	1	1349	0
chr12	19590871	19591404	B_Cells_Pritchard.1153799	0	-	19590871	19591404	0	1	533	0
chr12	19590967	19592103	B_cells_Cheung.66435	0	.	19590967	19592103	0	1	1136	0
chr12	19592717	19609822	REMC_LuminalBreast.35858	0	+	19592717	19609822	0	2	4657,12319	0,4786
chr12	19592717	19609822	REMC_LuminalBreast.35859	0	.	19592717	19609822	0	1	17105	0
chr12	19594705	19595724	REMC_MyoepithelialBreast.33638	0	.	19594705	19595724	0	1	1019	0
chr12	19594929	19595666	melanoma_Garraway_short_term_cultures.23047	0	.	19594929	19595666	0	1	737	0
chr12	19595203	19595646	B_cells_Cheung.66440	0	.	19595203	19595646	0	1	443	0
chr12	19595989	19597197	H1_polyA+.39916	0	.	19595989	19597197	0	1	1208	0
chr12	19596075	19600515	B_cells_Cheung.66442	0	.	19596075	19600515	0	1	4440	0
chr12	19596396	19598501	REMC_BreastStem.18219	0	.	19596396	19598501	0	1	2105	0
chr12	19596527	19602397	REMC_MyoepithelialBreast.33639	0	.	19596527	19602397	0	1	5870	0
chr12	19597283	19598499	H1_polyA+.39917	0	.	19597283	19598499	0	1	1216	0
chr12	19597297	19598249	CD4_Plagnol_resting.21080	0	.	19597297	19598249	0	1	952	0
chr12	19597300	19598504	CD4_Plagnol_activated.21661	0	.	19597300	19598504	0	1	1204	0
chr12	19597303	19598036	brain_AmbionMAQC.15160	0	.	19597303	19598036	0	1	733	0
chr12	19597307	19598457	melanoma_Garraway_short_term_cultures.23049	0	.	19597307	19598457	0	1	1150	0
chr12	19597316	19598546	liver_polyA+.47030	0	.	19597316	19598546	0	1	1230	0
chr12	19597328	19598418	MIP101.23547	0	.	19597328	19598418	0	1	1090	0
chr12	19597329	19598129	ZR751_Thompson.8359	0	.	19597329	19598129	0	1	800	0
chr12	19597333	19598252	prostate_normal.20218	0	.	19597333	19598252	0	1	919	0
chr12	19597366	19598469	BT474_Burge_Thompson.11412	0	.	19597366	19598469	0	1	1103	0
chr12	19597381	19598456	HepG2_Caltech_ENCODE.12430	0	.	19597381	19598456	0	1	1075	0
chr12	19597407	19598285	kidney_Gilad.30394	0	.	19597407	19598285	0	1	878	0
chr12	19601457	19604284	H1_polyA+.39919	0	.	19601457	19604284	0	1	2827	0
chr12	19601786	19603400	melanoma_Garraway_short_term_cultures.23052	0	.	19601786	19603400	0	1	1614	0
chr12	19601998	19605211	B_cells_Cheung.66446	0	.	19601998	19605211	0	1	3213	0
chr12	19602468	19609734	REMC_MyoepithelialBreast.33497	0	.	19602468	19609734	0	1	7266	0
chr12	19602509	19604566	REMC_BreastStem.18223	0	.	19602509	19604566	0	1	2057	0
chr12	19602597	19604895	B_Cells_Pritchard.1153819	0	.	19602597	19604895	0	1	2298	0
chr12	19602804	19603378	prostate_carcinoma.34588	0	.	19602804	19603378	0	1	574	0
chr12	19602927	19603377	kidney_Gilad.30395	0	.	19602927	19603377	0	1	450	0
chr12	19602927	19603377	liver_polyA+.47031	0	.	19602927	19603377	0	1	450	0
chr12	19613332	19614177	B_cells_Cheung.66452	0	.	19613332	19614177	0	1	845	0
chr12	19613450	19615133	REMC_LuminalBreast.35861	0	.	19613450	19615133	0	1	1683	0
chr12	19613851	19614970	REMC_MyoepithelialBreast.33498	0	.	19613851	19614970	0	1	1119	0
chr12	19615205	19624211	REMC_LuminalBreast.35862	0	.	19615205	19624211	0	1	9006	0
chr12	19616756	19620608	B_cells_Cheung.66456	0	.	19616756	19620608	0	1	3852	0
chr12	19616901	19620419	B_Cells_Pritchard.1153865	0	+	19616901	19620419	0	1	3518	0
chr12	19616963	19617604	HepG2_Caltech_ENCODE.12435	0	.	19616963	19617604	0	1	641	0
chr12	19616967	19618073	H1_polyA+.39924	0	.	19616967	19618073	0	1	1106	0
chr12	19616987	19617841	REMC_MyoepithelialBreast.33500	0	.	19616987	19617841	0	1	854	0
chr12	19617225	19620419	B_Cells_Pritchard.1153867	0	-	19617225	19620419	0	1	3194	0
chr12	19617250	19618615	prostate_carcinoma.34591	0	.	19617250	19618615	0	1	1365	0
chr12	19618187	19622404	REMC_MyoepithelialBreast.33501	0	.	19618187	19622404	0	1	4217	0
chr12	19618757	19620417	prostate_carcinoma.34592	0	.	19618757	19620417	0	1	1660	0
chr12	19619675	19620524	H1_polyA+.39926	0	.	19619675	19620524	0	1	849	0
chr12	19621146	19621723	B_cells_Cheung.66458	0	.	19621146	19621723	0	1	577	0
chr12	19623494	19624535	B_Cells_Pritchard.1153879	0	.	19623494	19624535	0	1	1041	0
chr12	19624290	19630492	REMC_LuminalBreast.35863	0	.	19624290	19630492	0	1	6202	0
chr12	19625725	19630565	REMC_MyoepithelialBreast.33504	0	.	19625725	19630565	0	1	4840	0
chr12	19627011	19632196	B_cells_Cheung.66466	0	.	19627011	19632196	0	1	5185	0
chr12	19627031	19628901	H1_polyA+.39930	0	.	19627031	19628901	0	1	1870	0
chr12	19627032	19630305	B_Cells_Pritchard.1153887	0	.	19627032	19630305	0	1	3273	0
chr12	19627080	19628907	HepG2_Caltech_ENCODE.12437	0	.	19627080	19628907	0	1	1827	0
chr12	19627346	19628121	CD4_Plagnol_resting.21086	0	.	19627346	19628121	0	1	775	0
chr12	19627354	19628132	CD4_Plagnol_activated.21666	0	.	19627354	19628132	0	1	778	0
chr12	19627472	19627989	prostate_normal.20220	0	.	19627472	19627989	0	1	517	0
chr12	19627504	19628058	brain_AmbionMAQC.15169	0	.	19627504	19628058	0	1	554	0
chr12	19629206	19630654	H1_polyA+.39931	0	.	19629206	19630654	0	1	1448	0
chr12	19630738	19635711	REMC_LuminalBreast.35864	0	.	19630738	19635711	0	1	4973	0
chr12	19630739	19631866	REMC_MyoepithelialBreast.33505	0	.	19630739	19631866	0	1	1127	0
chr12	19630790	19631645	CD4_Plagnol_resting.21088	0	.	19630790	19631645	0	1	855	0
chr12	19630830	19632382	melanoma_Garraway_short_term_cultures.23057	0	.	19630830	19632382	0	1	1552	0
chr12	19630932	19631730	B_Cells_Pritchard.1153893	0	.	19630932	19631730	0	1	798	0
chr12	19632247	19634013	B_cells_Cheung.66467	0	.	19632247	19634013	0	1	1766	0
chr12	19633473	19634700	REMC_MyoepithelialBreast.33507	0	.	19633473	19634700	0	1	1227	0
chr12	19635345	19636996	B_Cells_Pritchard.1153903	0	.	19635345	19636996	0	1	1651	0
chr12	19635784	19644280	REMC_LuminalBreast.35865	0	.	19635784	19644280	0	1	8496	0
chr12	19635847	19637044	B_cells_Cheung.66470	0	.	19635847	19637044	0	1	1197	0
chr12	19635896	19637017	REMC_MyoepithelialBreast.33509	0	.	19635896	19637017	0	1	1121	0
chr12	19638022	19638655	B_Cells_Pritchard.1153909	0	.	19638022	19638655	0	1	633	0
chr12	19640457	19641801	REMC_MyoepithelialBreast.33512	0	.	19640457	19641801	0	1	1344	0
chr12	19649954	19650579	REMC_LuminalBreast.35870	0	.	19649954	19650579	0	1	625	0
chr12	19649976	19650588	B_Cells_Pritchard.1153963	0	.	19649976	19650588	0	1	612	0
chr12	19651265	19658671	REMC_LuminalBreast.35871	0	.	19651265	19658671	0	1	7406	0
chr12	19666980	19669613	REMC_LuminalBreast.35876	0	.	19666980	19669613	0	1	2633	0
chr12	19670493	19672958	REMC_LuminalBreast.35877	0	.	19670493	19672958	0	1	2465	0
chr12	19682142	19683528	REMC_LuminalBreast.35883	0	.	19682142	19683528	0	1	1386	0
chr12	19683737	19685413	REMC_LuminalBreast.35884	0	.	19683737	19685413	0	1	1676	0
chr12	19706010	19707588	REMC_MyoepithelialBreast.33527	0	.	19706010	19707588	0	1	1578	0
chr12	19716453	19718880	REMC_MyoepithelialBreast.33532	0	.	19716453	19718880	0	1	2427	0
chr12	19719220	19723705	REMC_LuminalBreast.35897	0	.	19719220	19723705	0	1	4485	0
chr12	19721158	19721816	REMC_MyoepithelialBreast.33534	0	.	19721158	19721816	0	1	658	0
chr12	19728760	19732259	REMC_LuminalBreast.35899	0	.	19728760	19732259	0	1	3499	0
chr12	19729843	19733509	REMC_MyoepithelialBreast.33537	0	.	19729843	19733509	0	1	3666	0
chr12	19733347	19734116	REMC_LuminalBreast.35901	0	.	19733347	19734116	0	1	769	0
chr12	19734836	19739239	REMC_LuminalBreast.35902	0	.	19734836	19739239	0	1	4403	0
chr12	19736328	19737429	REMC_BreastStem.18205	0	.	19736328	19737429	0	1	1101	0
chr12	19737117	19738156	REMC_MyoepithelialBreast.33539	0	.	19737117	19738156	0	1	1039	0
chr12	19741592	19743186	REMC_MyoepithelialBreast.33544	0	.	19741592	19743186	0	1	1594	0
chr12	19743835	19751561	REMC_MyoepithelialBreast.33546	0	.	19743835	19751561	0	1	7726	0
chr12	19744294	19748169	REMC_BreastStem.18206	0	.	19744294	19748169	0	1	3875	0
chr12	19744996	19745308	B_Cells_Pritchard.1154333	0	.	19744996	19745308	0	1	312	0
chr12	19745993	19750912	REMC_LuminalBreast.35905	0	.	19745993	19750912	0	1	4919	0
chr12	19754768	19757908	REMC_MyoepithelialBreast.33549	0	.	19754768	19757908	0	1	3140	0
chr12	19763776	19764821	REMC_LuminalBreast.35908	0	.	19763776	19764821	0	1	1045	0
chr12	19763884	19764805	REMC_MyoepithelialBreast.33554	0	.	19763884	19764805	0	1	921	0
chr12	19793326	19798116	REMC_MyoepithelialBreast.33565	0	.	19793326	19798116	0	1	4790	0
chr12	19800037	19801709	REMC_LuminalBreast.35916	0	.	19800037	19801709	0	1	1672	0
chr12	19806776	19807601	REMC_MyoepithelialBreast.33572	0	.	19806776	19807601	0	1	825	0
chr12	19807739	19809123	REMC_LuminalBreast.35917	0	.	19807739	19809123	0	1	1384	0
chr12	19807957	19809014	REMC_MyoepithelialBreast.33573	0	.	19807957	19809014	0	1	1057	0
chr12	19812201	19813486	REMC_LuminalBreast.35919	0	.	19812201	19813486	0	1	1285	0
chr12	19819373	19820103	REMC_MyoepithelialBreast.33580	0	.	19819373	19820103	0	1	730	0
chr12	19825162	19826428	REMC_LuminalBreast.35920	0	.	19825162	19826428	0	1	1266	0
chr12	19825203	19825941	REMC_MyoepithelialBreast.33581	0	.	19825203	19825941	0	1	738	0
chr12	19872670	19873708	REMC_MyoepithelialBreast.33589	0	.	19872670	19873708	0	1	1038	0
chr12	19947968	19948283	B_Cells_Pritchard.1154765	0	.	19947968	19948283	0	1	315	0
chr12	19985346	19985920	HeLa_polyA+_Chen.12628	0	.	19985346	19985920	0	1	574	0
chr12	19985367	19985754	A549_Myers.26830	0	.	19985367	19985754	0	1	387	0
chr12	19985572	19986134	K562.15715	0	.	19985572	19986134	0	1	562	0
chr12	19985578	19986128	H9_polyA+.15656	0	.	19985578	19986128	0	1	550	0
chr12	19985578	19985920	HeLa_polyA-_Chen.6652	0	.	19985578	19985920	0	1	342	0
chr12	19985585	19986599	H1_polyA+.39932	0	.	19985585	19986599	0	1	1014	0
chr12	19985618	19986675	B_Cells_Pritchard.1154813	0	+	19985618	19986675	0	2	151,201	0,856
chr12	20056398	20056902	HeLa_polyA+_Chen.12632	0	.	20056398	20056902	0	1	504	0
chr12	20737367	20738355	HeLa_polyA+_Chen.12642	0	.	20737367	20738355	0	1	988	0
chr12	21718515	21718841	A549_Myers.26889	0	.	21718515	21718841	0	1	326	0
chr12	21986127	21986806	B_cells_Cheung.66644	0	.	21986127	21986806	0	1	679	0
chr12	21986288	21986821	liver_polyA+.47378	0	.	21986288	21986821	0	1	533	0
chr12	22052458	22053087	B_Cells_Pritchard.1158731	0	.	22052458	22053087	0	1	629	0
chr12	22052732	22053116	K562.15762	0	.	22052732	22053116	0	1	384	0
chr12	22052759	22053270	melanoma_Garraway_short_term_cultures.23118	0	.	22052759	22053270	0	1	511	0
chr12	22052767	22053069	CD4_Plagnol_activated.21696	0	.	22052767	22053069	0	1	302	0
chr12	22383446	22384292	B_Cells_Pritchard.1159659	0	.	22383446	22384292	0	1	846	0
chr12	22785991	22786865	prostate_carcinoma.34730	0	.	22785991	22786865	0	1	874	0
chr12	22995326	22997930	HIT000042671	0	+	22995326	22997930	0	1	2604	0
chr12	23036298	23071865	K562.15788	0	-	23036298	23071865	0	2	1461,261	0,35306
chr12	23083366	23085507	K562.15796	0	.	23083366	23085507	0	1	2141	0
chr12	23259907	23260462	K562.15819	0	.	23259907	23260462	0	1	555	0
chr12	23261521	23264498	K562.15820	0	.	23261521	23264498	0	1	2977	0
chr12	23335264	23336194	K562.15831	0	.	23335264	23336194	0	1	930	0
chr12	23407003	23407660	K562.15839	0	.	23407003	23407660	0	1	657	0
chr12	23426359	23427124	K562.15842	0	.	23426359	23427124	0	1	765	0
chr12	23518669	23519352	B_Cells_Pritchard.1162183	0	.	23518669	23519352	0	1	683	0
chr12	23518706	23519038	A549_Myers.26931	0	.	23518706	23519038	0	1	332	0
chr12	23518750	23519557	BT474_Burge_Thompson.11440	0	.	23518750	23519557	0	1	807	0
chr12	23574011	23574425	B_cells_Cheung.66719	0	.	23574011	23574425	0	1	414	0
chr12	24789880	24794514	melanoma_Garraway_short_term_cultures.23198	0	.	24789880	24794514	0	1	4634	0
chr12	24791511	24792040	MB435_Burge.14910	0	.	24791511	24792040	0	1	529	0
chr12	24801043	24802836	HepG2_Caltech_ENCODE.12491	0	.	24801043	24802836	0	1	1793	0
chr12	24806241	24808343	HepG2_Caltech_ENCODE.12486	0	.	24806241	24808343	0	1	2102	0
chr12	25000461	25000908	B_cells_Cheung.67102	0	.	25000461	25000908	0	1	447	0
chr12	25001540	25002629	B_cells_Cheung.67104	0	.	25001540	25002629	0	1	1089	0
chr12	25002114	25002518	REMC_BreastStem.18280	0	.	25002114	25002518	0	1	404	0
chr12	25002114	25004588	REMC_BreastStem.18281	0	+	25002114	25004588	0	2	361,334	0,2140
chr12	25005449	25007184	B_cells_Cheung.66856	0	.	25005449	25007184	0	1	1735	0
chr12	25005489	25008181	REMC_BreastStem.18283	0	.	25005489	25008181	0	1	2692	0
chr12	25045189	25045970	B_cells_Cheung.66876	0	.	25045189	25045970	0	1	781	0
chr12	25076079	25077331	B_cells_Cheung.66871	0	.	25076079	25077331	0	1	1252	0
chr12	25378162	25379180	REMC_MyoepithelialBreast.33701	0	.	25378162	25379180	0	1	1018	0
chr12	25425737	25430406	REMC_MyoepithelialBreast.33704	0	.	25425737	25430406	0	1	4669	0
chr12	25425913	25427345	REMC_BreastStem.18293	0	.	25425913	25427345	0	1	1432	0
chr12	25426648	25430406	REMC_LuminalBreast.35991	0	.	25426648	25430406	0	1	3758	0
chr12	25428012	25430400	B_Cells_Pritchard.1166885	0	.	25428012	25430400	0	1	2388	0
chr12	25428593	25429704	REMC_BreastStem.18294	0	.	25428593	25429704	0	1	1111	0
chr12	25428700	25430405	CD4_Snyder.26251	0	.	25428700	25430405	0	1	1705	0
chr12	25428998	25429665	B_cells_Cheung.66957	0	.	25428998	25429665	0	1	667	0
chr12	25429553	25430404	prostate_carcinoma.34816	0	.	25429553	25430404	0	1	851	0
chr12	25429590	25430387	CD4_Plagnol_activated.21762	0	.	25429590	25430387	0	1	797	0
chr12	25429629	25430697	A549_Myers.26976	0	.	25429629	25430697	0	1	1068	0
chr12	25429672	25430418	H1_polyA+.40236	0	.	25429672	25430418	0	1	746	0
chr12	25429727	25430536	B_cells_Cheung.66958	0	.	25429727	25430536	0	1	809	0
chr12	25429875	25430405	REMC_BreastStem.18295	0	.	25429875	25430405	0	1	530	0
chr12	25429901	25430406	MIP101.23668	0	.	25429901	25430406	0	1	505	0
chr12	25429931	25430235	IMR90_UCSD_REMC.17471	0	+	25429931	25430235	0	1	304	0
chr12	25429942	25430390	CD4_Plagnol_resting.21172	0	.	25429942	25430390	0	1	448	0
chr12	25429944	25430404	prostate_normal.20308	0	.	25429944	25430404	0	1	460	0
chr12	25429965	25430404	BT474_Burge_Thompson.11446	0	.	25429965	25430404	0	1	439	0
chr12	25430001	25430379	T47D_Burge_Thompson.9922	0	.	25430001	25430379	0	1	378	0
chr12	25847451	25848638	H1_polyA+.40237	0	.	25847451	25848638	0	1	1187	0
chr12	25847462	25848504	REMC_LuminalBreast.35993	0	.	25847462	25848504	0	1	1042	0
chr12	25847469	25848660	K562.15882	0	.	25847469	25848660	0	1	1191	0
chr12	25847485	25848628	MIP101.23674	0	+	25847485	25848628	0	2	255,485	0,658
chr12	25847833	25848322	REMC_BreastStem.18297	0	.	25847833	25848322	0	1	489	0
chr12	25847834	25848504	REMC_MyoepithelialBreast.33708	0	.	25847834	25848504	0	1	670	0
chr12	25847834	25848330	HeLa_polyA+_Chen.12695	0	.	25847834	25848330	0	1	496	0
chr12	25847837	25848656	HepG2_Caltech_ENCODE.12509	0	.	25847837	25848656	0	1	819	0
chr12	25847840	25848325	H9_polyA+.15772	0	.	25847840	25848325	0	1	485	0
chr12	25847852	25848323	H1_rRNA-depleted_UCSD_REMC.30823	0	.	25847852	25848323	0	1	471	0
chr12	25847859	25848633	MCF7_Burge_Thompson.10267	0	.	25847859	25848633	0	1	774	0
chr12	25847859	25848633	T47D_Burge_Thompson.9924	0	.	25847859	25848633	0	1	774	0
chr12	25847859	25848633	ZR751_Thompson.8387	0	.	25847859	25848633	0	1	774	0
chr12	25847859	25848631	MDAMB468_Thompson.8675	0	.	25847859	25848631	0	1	772	0
chr12	25847864	25848633	BT20_Thompson.7427	0	.	25847864	25848633	0	1	769	0
chr12	25847865	25848628	CD4_Plagnol_resting.21186	0	.	25847865	25848628	0	1	763	0
chr12	25847866	25848633	MDAMB231_Thompson.7687	0	.	25847866	25848633	0	1	767	0
chr12	25847869	25848628	melanoma_Garraway_short_term_cultures.23218	0	.	25847869	25848628	0	1	759	0
chr12	25847961	25848629	brain_AmbionMAQC.15270	0	.	25847961	25848629	0	1	668	0
chr12	25962010	25964367	REMC_MyoepithelialBreast.33719	0	.	25962010	25964367	0	1	2357	0
chr12	25972544	25975124	REMC_MyoepithelialBreast.33721	0	.	25972544	25975124	0	1	2580	0
chr12	25973391	25974812	REMC_BreastStem.18300	0	.	25973391	25974812	0	1	1421	0
chr12	25975632	25979384	REMC_MyoepithelialBreast.33722	0	.	25975632	25979384	0	1	3752	0
chr12	25985538	25986667	REMC_LuminalBreast.35997	0	.	25985538	25986667	0	1	1129	0
chr12	25988703	25995832	H1_polyA+.40240	0	.	25988703	25995832	0	1	7129	0
chr12	25988753	25992487	REMC_BreastStem.18375	0	.	25988753	25992487	0	1	3734	0
chr12	25989055	25992089	melanoma_Garraway_short_term_cultures.23221	0	.	25989055	25992089	0	1	3034	0
chr12	25989060	25995825	REMC_LuminalBreast.35998	0	.	25989060	25995825	0	1	6765	0
chr12	25989082	25991885	HeLa_polyA+_Chen.12721	0	.	25989082	25991885	0	1	2803	0
chr12	25989450	25990703	H9_polyA+.15784	0	.	25989450	25990703	0	2	520,657	0,596
chr12	25989454	25991872	MCF7_Burge_Thompson.10269	0	.	25989454	25991872	0	1	2418	0
chr12	25989456	25990487	BT20_Thompson.7429	0	.	25989456	25990487	0	1	1031	0
chr12	25994527	25995812	melanoma_Garraway_short_term_cultures.23224	0	.	25994527	25995812	0	1	1285	0
chr12	25994551	25995820	REMC_BreastStem.18380	0	.	25994551	25995820	0	1	1269	0
chr12	25994564	25995698	HeLa_polyA+_Chen.12724	0	.	25994564	25995698	0	1	1134	0
chr12	25994702	25995192	NEC_from_H9.25916	0	.	25994702	25995192	0	1	490	0
chr12	25994852	25995786	B_Cells_Pritchard.1168023	0	.	25994852	25995786	0	1	934	0
chr12	25996070	26001039	REMC_BreastStem.18376	0	.	25996070	26001039	0	1	4969	0
chr12	25996096	25999957	liver_polyA+.47830	0	+	25996096	25999957	0	2	585,653	0,3208
chr12	25996595	26000550	prostate_normal.20329	0	+	25996595	26000550	0	2	86,1246	0,2709
chr12	25997742	25999702	B_Cells_Pritchard.1168037	0	.	25997742	25999702	0	1	1960	0
chr12	25997818	25999759	H1_polyA+.40241	0	.	25997818	25999759	0	1	1941	0
chr12	25997887	25999771	H9_polyA+.15788	0	.	25997887	25999771	0	1	1884	0
chr12	25997929	26003023	melanoma_Garraway_short_term_cultures.23227	0	-	25997929	26003023	0	4	1512,123,126,805	0,2495,2909,4289
chr12	25997937	26000386	MIP101.23680	0	.	25997937	26000386	0	1	2449	0
chr12	25998887	26000027	BT474_Burge_Thompson.11475	0	.	25998887	26000027	0	1	1140	0
chr12	26128643	26129781	REMC_MyoepithelialBreast.34799	0	.	26128643	26129781	0	1	1138	0
chr12	26149567	26158459	REMC_MyoepithelialBreast.34804	0	.	26149567	26158459	0	1	8892	0
chr12	26151379	26152445	REMC_BreastStem.18410	0	.	26151379	26152445	0	1	1066	0
chr12	26155108	26156410	REMC_BreastStem.18412	0	.	26155108	26156410	0	1	1302	0
chr12	26155363	26156536	REMC_LuminalBreast.36058	0	.	26155363	26156536	0	1	1173	0
chr12	26156615	26158551	REMC_LuminalBreast.36059	0	.	26156615	26158551	0	1	1936	0
chr12	26156705	26158637	melanoma_Garraway_short_term_cultures.23244	0	.	26156705	26158637	0	1	1932	0
chr12	26157828	26158602	B_Cells_Pritchard.1168497	0	.	26157828	26158602	0	1	774	0
chr12	26158065	26158848	A549_Myers.26992	0	.	26158065	26158848	0	1	783	0
chr12	26170666	26170975	A549_Myers.26997	0	.	26170666	26170975	0	1	309	0
chr12	26205323	26206112	B_Cells_Pritchard.1168629	0	.	26205323	26206112	0	1	789	0
chr12	26205345	26205960	B_cells_Cheung.66970	0	.	26205345	26205960	0	1	615	0
chr12	26210919	26211848	REMC_MyoepithelialBreast.34808	0	.	26210919	26211848	0	1	929	0
chr12	26283582	26284102	B_cells_Cheung.66988	0	.	26283582	26284102	0	1	520	0
chr12	26339392	26341004	REMC_LuminalBreast.36077	0	.	26339392	26341004	0	1	1612	0
chr12	26350282	26357952	REMC_LuminalBreast.36082	0	.	26350282	26357952	0	1	7670	0
chr12	26356352	26357703	REMC_MyoepithelialBreast.33737	0	.	26356352	26357703	0	1	1351	0
chr12	26358123	26376990	REMC_LuminalBreast.36083	0	.	26358123	26376990	0	1	18867	0
chr12	26359337	26360029	REMC_MyoepithelialBreast.33739	0	.	26359337	26360029	0	1	692	0
chr12	26361140	26365341	REMC_MyoepithelialBreast.33740	0	.	26361140	26365341	0	1	4201	0
chr12	26878723	26879239	REMC_LuminalBreast.36092	0	.	26878723	26879239	0	1	516	0
chr12	26879667	26881689	REMC_LuminalBreast.36093	0	.	26879667	26881689	0	1	2022	0
chr12	26879710	26881148	prostate_carcinoma.34900	0	.	26879710	26881148	0	1	1438	0
chr12	26879712	26881349	B_Cells_Pritchard.1170391	0	.	26879712	26881349	0	1	1637	0
chr12	26879821	26881192	B_cells_Cheung.67012	0	.	26879821	26881192	0	1	1371	0
chr12	26879989	26880748	prostate_normal.20366	0	.	26879989	26880748	0	1	759	0
chr12	26882617	26882948	B_Cells_Pritchard.1170399	0	.	26882617	26882948	0	1	331	0
chr12	26897412	26898026	B_cells_Cheung.67019	0	.	26897412	26898026	0	1	614	0
chr12	26897481	26898318	prostate_carcinoma.34905	0	.	26897481	26898318	0	1	837	0
chr12	26924366	26925180	B_Cells_Pritchard.1170537	0	.	26924366	26925180	0	1	814	0
chr12	26930281	26931401	REMC_LuminalBreast.36097	0	.	26930281	26931401	0	1	1120	0
chr12	26932041	26936529	pHIT000111486	0	+	26932041	26936529	0	2	116,1582	0,2906
chr12	26934109	26936547	B_cells_Cheung.67023	0	.	26934109	26936547	0	1	2438	0
chr12	26934183	26936994	H1_polyA+.40291	0	.	26934183	26936994	0	1	2811	0
chr12	26934238	26936982	MIP101.23735	0	.	26934238	26936982	0	1	2744	0
chr12	26934715	26936000	REMC_MyoepithelialBreast.33899	0	.	26934715	26936000	0	1	1285	0
chr12	26935045	26936606	prostate_carcinoma.34906	0	.	26935045	26936606	0	1	1561	0
chr12	26935763	26936967	REMC_LuminalBreast.36100	0	.	26935763	26936967	0	1	1204	0
chr12	26936106	26936914	REMC_MyoepithelialBreast.33900	0	.	26936106	26936914	0	1	808	0
chr12	26939396	26943598	REMC_LuminalBreast.36102	0	.	26939396	26943598	0	1	4202	0
chr12	26939564	26943615	H1_polyA+.40293	0	.	26939564	26943615	0	1	4051	0
chr12	26939690	26941028	B_Cells_Pritchard.1170581	0	.	26939690	26941028	0	1	1338	0
chr12	26939729	26941020	B_cells_Cheung.67025	0	.	26939729	26941020	0	1	1291	0
chr12	26946601	26947172	REMC_LuminalBreast.36105	0	.	26946601	26947172	0	1	571	0
chr12	26946972	26947784	REMC_MyoepithelialBreast.33904	0	.	26946972	26947784	0	1	812	0
chr12	26947236	26947790	REMC_LuminalBreast.36106	0	.	26947236	26947790	0	1	554	0
chr12	27100337	27102558	REMC_LuminalBreast.36129	0	.	27100337	27102558	0	1	2221	0
chr12	27103146	27103799	REMC_MyoepithelialBreast.33938	0	.	27103146	27103799	0	1	653	0
chr12	27103241	27104049	B_cells_Cheung.67122	0	.	27103241	27104049	0	1	808	0
chr12	27120653	27124226	REMC_MyoepithelialBreast.33947	0	.	27120653	27124226	0	1	3573	0
chr12	27122878	27124209	REMC_LuminalBreast.36136	0	.	27122878	27124209	0	1	1331	0
chr12	27232226	27236980	REMC_LuminalBreast.36141	0	.	27232226	27236980	0	1	4754	0
chr12	27234100	27234905	B_Cells_Pritchard.1170959	0	.	27234100	27234905	0	1	805	0
chr12	27234136	27235114	REMC_MyoepithelialBreast.33955	0	.	27234136	27235114	0	1	978	0
chr12	27234155	27241985	B_cells_Cheung.67145	0	.	27234155	27241985	0	1	7830	0
chr12	27237144	27238452	REMC_LuminalBreast.36142	0	.	27237144	27238452	0	1	1308	0
chr12	27237245	27238695	MIP101.23790	0	.	27237245	27238695	0	1	1450	0
chr12	27237414	27238513	REMC_MyoepithelialBreast.33957	0	.	27237414	27238513	0	1	1099	0
chr12	27237831	27241111	B_Cells_Pritchard.1170965	0	.	27237831	27241111	0	1	3280	0
chr12	27239280	27242526	REMC_LuminalBreast.36143	0	.	27239280	27242526	0	1	3246	0
chr12	27239510	27240922	prostate_carcinoma.34957	0	.	27239510	27240922	0	1	1412	0
chr12	27239561	27241000	H1_polyA+.40369	0	.	27239561	27241000	0	1	1439	0
chr12	27253297	27254150	B_cells_Cheung.67165	0	.	27253297	27254150	0	1	853	0
chr12	27256446	27257365	B_cells_Cheung.67168	0	.	27256446	27257365	0	1	919	0
chr12	27257469	27257781	B_cells_Cheung.67169	0	.	27257469	27257781	0	1	312	0
chr12	27257915	27259002	B_cells_Cheung.67170	0	.	27257915	27259002	0	1	1087	0
chr12	27266305	27267311	B_cells_Cheung.67174	0	.	27266305	27267311	0	1	1006	0
chr12	27466320	27466839	H1_rRNA-depleted_UCSD_REMC.30967	0	.	27466320	27466839	0	1	519	0
chr12	27495339	27496080	B_cells_Cheung.67836	0	.	27495339	27496080	0	1	741	0
chr12	27507743	27508905	B_cells_Cheung.67843	0	.	27507743	27508905	0	1	1162	0
chr12	27558589	27558956	B_Cells_Pritchard.1172071	0	.	27558589	27558956	0	1	367	0
chr12	27745347	27747226	REMC_LuminalBreast.36261	0	.	27745347	27747226	0	1	1879	0
chr12	27746106	27747190	REMC_BreastStem.18367	0	.	27746106	27747190	0	1	1084	0
chr12	27746139	27747269	melanoma_Garraway_short_term_cultures.23362	0	.	27746139	27747269	0	1	1130	0
chr12	27747437	27749127	REMC_MyoepithelialBreast.34198	0	.	27747437	27749127	0	1	1690	0
chr12	27748083	27749258	melanoma_Garraway_short_term_cultures.23363	0	.	27748083	27749258	0	1	1175	0
chr12	27854633	27855723	REMC_MyoepithelialBreast.34046	0	.	27854633	27855723	0	1	1090	0
chr12	27854889	27855523	B_cells_Cheung.67432	0	.	27854889	27855523	0	1	634	0
chr12	27854908	27855686	B_Cells_Pritchard.1172725	0	.	27854908	27855686	0	1	778	0
chr12	27858100	27859022	REMC_MyoepithelialBreast.34048	0	.	27858100	27859022	0	1	922	0
chr12	28070077	28070418	A549_Myers.27128	0	.	28070077	28070418	0	1	341	0
chr12	28220208	28228907	B_Cells_Pritchard.1173635	0	-	28220208	28228907	0	2	186,341	0,8358
chr12	28220366	28221342	prostate_carcinoma.35016	0	.	28220366	28221342	0	1	976	0
chr12	28229830	28231612	HepG2_Caltech_ENCODE.12565	0	.	28229830	28231612	0	1	1782	0
chr12	28229979	28232405	B_Cells_Pritchard.1173641	0	.	28229979	28232405	0	1	2426	0
chr12	28230328	28232382	B_cells_Cheung.67438	0	.	28230328	28232382	0	1	2054	0
chr12	28230402	28231956	K562.15950	0	.	28230402	28231956	0	1	1554	0
chr12	28230687	28232259	MIP101.23879	0	.	28230687	28232259	0	1	1572	0
chr12	28232121	28232954	HepG2_Caltech_ENCODE.12566	0	.	28232121	28232954	0	1	833	0
chr12	28652463	28652881	B_Cells_Pritchard.1175191	0	.	28652463	28652881	0	1	418	0
chr12	28828988	28831733	melanoma_Garraway_short_term_cultures.23400	0	.	28828988	28831733	0	1	2745	0
chr12	28836150	28839266	melanoma_Garraway_short_term_cultures.23403	0	.	28836150	28839266	0	1	3116	0
chr12	28866339	28870197	melanoma_Garraway_short_term_cultures.23404	0	-	28866339	28870197	0	2	134,300	0,3558
chr12	29082936	29086266	H1_polyA+.40413	0	.	29082936	29086266	0	1	3330	0
chr12	29181328	29181744	H1_polyA+.40451	0	.	29181328	29181744	0	1	416	0
chr12	29182438	29182780	H1_polyA+.40453	0	.	29182438	29182780	0	1	342	0
chr12	29433503	29434570	B_Cells_Pritchard.1177863	0	+	29433503	29434570	0	1	1067	0
chr12	29447883	29448828	B_cells_Cheung.67696	0	.	29447883	29448828	0	1	945	0
chr12	29448175	29448972	prostate_carcinoma.35065	0	.	29448175	29448972	0	1	797	0
chr12	29448191	29449713	B_Cells_Pritchard.1177935	0	+	29448191	29449713	0	1	1522	0
chr12	29454032	29454441	REMC_MyoepithelialBreast.34180	0	.	29454032	29454441	0	1	409	0
chr12	30845600	30851005	H1_polyA+.40478	0	-	30845600	30851005	0	2	1012,1613	0,3792
chr12	30848299	30850089	melanoma_Garraway_short_term_cultures.23451	0	.	30848299	30850089	0	1	1790	0
chr12	30848670	30849242	MCF10A_Thompson.7599	0	.	30848670	30849242	0	1	572	0
chr12	30848681	30849093	brain_AmbionMAQC.15393	0	.	30848681	30849093	0	1	412	0
chr12	30848710	30849883	MDAMB231_Thompson.7762	0	.	30848710	30849883	0	1	1173	0
chr12	30851133	30860055	H1_polyA+.40479	0	.	30851133	30860055	0	1	8922	0
chr12	30852161	30852957	HeLa_polyA+_Chen.12757	0	.	30852161	30852957	0	1	796	0
chr12	30854426	30857486	REMC_MyoepithelialBreast.34237	0	.	30854426	30857486	0	1	3060	0
chr12	30855441	30857748	melanoma_Garraway_short_term_cultures.23454	0	.	30855441	30857748	0	1	2307	0
chr12	30861098	30861462	A549_Myers.27171	0	.	30861098	30861462	0	1	364	0
chr12	30861098	30861603	HeLa_polyA+_Chen.12763	0	.	30861098	30861603	0	1	505	0
chr12	30861644	30865505	HIT000046627	0	+	30861644	30865505	0	1	3861	0
chr12	30863284	30864345	H1_polyA+.40480	0	.	30863284	30864345	0	1	1061	0
chr12	30864617	30865626	H1_polyA+.40481	0	.	30864617	30865626	0	1	1009	0
chr12	30866525	30866864	A549_Myers.27172	0	.	30866525	30866864	0	1	339	0
chr12	30866846	30867528	H1_polyA+.40482	0	.	30866846	30867528	0	1	682	0
chr12	30867483	30917559	pHIT000085363	0	-	30867483	30917559	0	3	171,84,75	0,47281,50001
chr12	30869619	30906379	pHIT000021451	0	+	30869619	30906379	0	2	102,243	0,36517
chr12	30897976	30898316	A549_Myers.27174	0	.	30897976	30898316	0	1	340	0
chr12	30906148	30906520	K562.15966	0	.	30906148	30906520	0	1	372	0
chr12	30929490	30930809	H1_polyA+.40486	0	.	30929490	30930809	0	1	1319	0
chr12	30931657	30932450	H1_polyA+.40487	0	.	30931657	30932450	0	1	793	0
chr12	31041870	31043254	prostate_carcinoma.35113	0	.	31041870	31043254	0	1	1384	0
chr12	31049958	31050551	B_Cells_Pritchard.1180809	0	.	31049958	31050551	0	1	593	0
chr12	31052916	31056973	prostate_carcinoma.35114	0	+	31052916	31056973	0	2	980,67	0,3990
chr12	31052965	31053846	REMC_BreastStem.18449	0	.	31052965	31053846	0	1	881	0
chr12	31052981	31053867	prostate_normal.20476	0	.	31052981	31053867	0	1	886	0
chr12	31065030	31065447	prostate_normal.20479	0	.	31065030	31065447	0	1	417	0
chr12	31065030	31066930	B_Cells_Pritchard.1181003	0	.	31065030	31066930	0	1	1900	0
chr12	31065038	31065801	HeLa_polyA+_Chen.12765	0	.	31065038	31065801	0	1	763	0
chr12	31065047	31065845	HepG2_Caltech_ENCODE.12596	0	.	31065047	31065845	0	1	798	0
chr12	31067269	31067913	B_Cells_Pritchard.1181001	0	.	31067269	31067913	0	1	644	0
chr12	31070420	31071445	H1_polyA+.40504	0	.	31070420	31071445	0	1	1025	0
chr12	31074520	31117442	pHIT000111512	0	-	31074520	31117442	0	5	95,127,159,82,47	0,6583,6967,22436,42875
chr12	31075874	31079464	H1_polyA+.40507	0	.	31075874	31079464	0	1	3590	0
chr12	31079890	31081044	H1_polyA+.40508	0	.	31079890	31081044	0	1	1154	0
chr12	31079914	31080839	B_cells_Cheung.67858	0	.	31079914	31080839	0	1	925	0
chr12	31082049	31085181	H1_polyA+.40510	0	.	31082049	31085181	0	1	3132	0
chr12	31083084	31085909	MIP101.23938	0	.	31083084	31085909	0	1	2825	0
chr12	31083314	31083681	B_Cells_Pritchard.1181075	0	.	31083314	31083681	0	1	367	0
chr12	31262044	31262492	MIP101.23946	0	.	31262044	31262492	0	1	448	0
chr12	31268172	31269662	REMC_LuminalBreast.36517	0	.	31268172	31269662	0	1	1490	0
chr12	31268271	31272589	MIP101.23947	0	.	31268271	31272589	0	1	4318	0
chr12	31270814	31271668	MCF7_Burge_Thompson.10362	0	.	31270814	31271668	0	1	854	0
chr12	31272807	31274525	MIP101.23948	0	.	31272807	31274525	0	1	1718	0
chr12	31277756	31278236	A549_Myers.27215	0	.	31277756	31278236	0	1	480	0
chr12	31279693	31281113	REMC_LuminalBreast.36518	0	.	31279693	31281113	0	1	1420	0
chr12	31293288	31294624	B_cells_Cheung.67909	0	.	31293288	31294624	0	1	1336	0
chr12	31296836	31299539	REMC_MyoepithelialBreast.34255	0	.	31296836	31299539	0	1	2703	0
chr12	31299616	31317449	REMC_MyoepithelialBreast.34259	0	.	31299616	31317449	0	1	17833	0
chr12	31312155	31317407	B_cells_Cheung.67919	0	.	31312155	31317407	0	1	5252	0
chr12	31406203	31407297	H1_polyA+.40546	0	.	31406203	31407297	0	1	1094	0
chr12	31406284	31406837	A549_Myers.27237	0	.	31406284	31406837	0	1	553	0
chr12	31408621	31408952	B_cells_Cheung.67939	0	.	31408621	31408952	0	1	331	0
chr12	31417511	31418816	H1_polyA+.40549	0	.	31417511	31418816	0	1	1305	0
chr12	31670517	31671493	REMC_BreastStem.18464	0	.	31670517	31671493	0	1	976	0
chr12	31774647	31775260	CD4_Plagnol_activated.21973	0	.	31774647	31775260	0	1	613	0
chr12	31792960	31793566	REMC_MyoepithelialBreast.34296	0	.	31792960	31793566	0	1	606	0
chr12	31794323	31796093	B_cells_Cheung.68022	0	.	31794323	31796093	0	1	1770	0
chr12	31796166	31797732	B_cells_Cheung.68021	0	.	31796166	31797732	0	1	1566	0
chr12	31853108	31853679	B_cells_Cheung.68046	0	.	31853108	31853679	0	1	571	0
chr12	31888860	31889348	liver_polyA+.48451	0	.	31888860	31889348	0	1	488	0
chr12	31918757	31919235	B_cells_Cheung.68055	0	.	31918757	31919235	0	1	478	0
chr12	31982460	31983593	B_cells_Cheung.68209	0	.	31982460	31983593	0	1	1133	0
chr12	31986421	31986812	kidney_Gilad.31284	0	.	31986421	31986812	0	1	391	0
chr12	31986421	31986812	liver_polyA+.48463	0	.	31986421	31986812	0	1	391	0
chr12	31986877	31990657	B_cells_Cheung.68213	0	.	31986877	31990657	0	1	3780	0
chr12	31998103	31998420	H1_polyA+.40690	0	.	31998103	31998420	0	1	317	0
chr12	31998334	32000376	B_cells_Cheung.68220	0	.	31998334	32000376	0	2	500,1492	0,550
chr12	31999147	31999573	melanoma_Garraway_short_term_cultures.23533	0	.	31999147	31999573	0	1	426	0
chr12	32038321	32039186	REMC_MyoepithelialBreast.34323	0	.	32038321	32039186	0	1	865	0
chr12	32041794	32045556	REMC_LuminalBreast.37329	0	.	32041794	32045556	0	1	3762	0
chr12	32054166	32055222	CD4_Plagnol_resting.22100	0	.	32054166	32055222	0	1	1056	0
chr12	32057681	32058209	REMC_LuminalBreast.36586	0	.	32057681	32058209	0	1	528	0
chr12	32057924	32058750	B_Cells_Pritchard.1201405	0	+	32057924	32058750	0	1	826	0
chr12	32068894	32070869	REMC_LuminalBreast.36590	0	.	32068894	32070869	0	1	1975	0
chr12	32073036	32073828	B_Cells_Pritchard.1201437	0	-	32073036	32073828	0	1	792	0
chr12	32073357	32073918	CD4_Plagnol_resting.21420	0	.	32073357	32073918	0	1	561	0
chr12	32694703	32695628	H1_polyA+.40704	0	.	32694703	32695628	0	1	925	0
chr12	32810846	32811648	REMC_MyoepithelialBreast.34493	0	.	32810846	32811648	0	1	802	0
chr12	32830093	32832250	H1_polyA+.40835	0	.	32830093	32832250	0	1	2157	0
chr12	32830142	32830800	HepG2_Caltech_ENCODE.12687	0	.	32830142	32830800	0	1	658	0
chr12	32830181	32830854	prostate_carcinoma.35297	0	.	32830181	32830854	0	1	673	0
chr12	32830371	32831136	REMC_LuminalBreast.36736	0	.	32830371	32831136	0	1	765	0
chr12	32830532	32830968	MIP101.24211	0	.	32830532	32830968	0	1	436	0
chr12	33029365	33029934	MCF7_Burge_Thompson.10412	0	.	33029365	33029934	0	1	569	0
chr12	33030179	33030531	MCF7_Burge_Thompson.10413	0	.	33030179	33030531	0	1	352	0
chr12	33030282	33030680	REMC_MyoepithelialBreast.34549	0	.	33030282	33030680	0	1	398	0
chr12	34081351	34082031	B_cells_Cheung.68260	0	.	34081351	34082031	0	1	680	0
chr12	34081572	34100971	Rinn_00020375	0	+	34081572	34100971	0	3	278,404,210	0,18685,19189
chr12	34168601	34169160	B_Cells_Pritchard.1187965	0	.	34168601	34169160	0	1	559	0
chr12	34247536	34248364	REMC_MyoepithelialBreast.34567	0	.	34247536	34248364	0	1	828	0
chr12	34247828	34248237	prostate_carcinoma.35329	0	.	34247828	34248237	0	1	409	0
chr12	34248141	34248769	brain_AmbionMAQC.15471	0	.	34248141	34248769	0	1	628	0
chr12	34248395	34249152	prostate_carcinoma.35330	0	.	34248395	34249152	0	1	757	0
chr12	34251108	34251887	REMC_MyoepithelialBreast.34569	0	.	34251108	34251887	0	1	779	0
chr12	34251457	34254054	prostate_carcinoma.35332	0	.	34251457	34254054	0	1	2597	0
chr12	34251457	34257689	prostate_carcinoma.35333	0	-	34251457	34257689	0	3	2433,70,140	0,5854,6092
chr12	34251487	34254004	prostate_normal.20589	0	.	34251487	34254004	0	1	2517	0
chr12	34251510	34252357	B_cells_Cheung.68270	0	.	34251510	34252357	0	1	847	0
chr12	34251945	34252645	REMC_MyoepithelialBreast.34570	0	.	34251945	34252645	0	1	700	0
chr12	34252436	34252902	B_cells_Cheung.68271	0	.	34252436	34252902	0	1	466	0
chr12	34252663	34253193	B_Cells_Pritchard.1188111	0	-	34252663	34253193	0	1	530	0
chr12	34252825	34253226	A549_Myers.27353	0	.	34252825	34253226	0	1	401	0
chr12	34252856	34253524	brain_AmbionMAQC.15472	0	.	34252856	34253524	0	1	668	0
chr12	34252956	34254086	B_cells_Cheung.68272	0	.	34252956	34254086	0	1	1130	0
chr12	34253390	34254097	REMC_MyoepithelialBreast.34571	0	.	34253390	34254097	0	1	707	0
chr12	34254206	34255614	B_cells_Cheung.68273	0	.	34254206	34255614	0	1	1408	0
chr12	34254207	34255571	prostate_carcinoma.35334	0	.	34254207	34255571	0	1	1364	0
chr12	34254210	34254721	prostate_normal.20590	0	.	34254210	34254721	0	1	511	0
chr12	34254215	34256206	REMC_MyoepithelialBreast.34572	0	.	34254215	34256206	0	1	1991	0
chr12	34254452	34255160	brain_AmbionMAQC.15473	0	.	34254452	34255160	0	1	708	0
chr12	34280283	34280688	BT474_Burge_Thompson.11620	0	.	34280283	34280688	0	1	405	0
chr12	34380364	34381022	A549_Myers.27359	0	.	34380364	34381022	0	1	658	0
chr12	34385204	34385648	A549_Myers.27361	0	.	34385204	34385648	0	1	444	0
chr12	34385721	34386248	A549_Myers.27362	0	.	34385721	34386248	0	1	527	0
chr12	34390691	34391528	A549_Myers.27363	0	.	34390691	34391528	0	1	837	0
chr12	34392945	34393788	A549_Myers.27365	0	.	34392945	34393788	0	1	843	0
chr12	34394730	34395245	A549_Myers.27367	0	.	34394730	34395245	0	1	515	0
chr12	34399089	34399610	A549_Myers.27368	0	.	34399089	34399610	0	1	521	0
chr12	34399928	34400325	A549_Myers.27369	0	.	34399928	34400325	0	1	397	0
chr12	34407011	34407334	A549_Myers.27371	0	.	34407011	34407334	0	1	323	0
chr12	34418615	34419070	A549_Myers.27372	0	.	34418615	34419070	0	1	455	0
chr12	36779664	36780274	K562.16094	0	.	36779664	36780274	0	1	610	0
chr12	36818578	36818984	prostate_carcinoma.35343	0	.	36818578	36818984	0	1	406	0
chr12	36886299	36900042	pHIT000021478	0	-	36886299	36900042	0	3	144,200,7	0,523,13736
chr12	37240786	37241830	B_cells_Cheung.68394	0	.	37240786	37241830	0	1	1044	0
chr12	37695766	37751521	pHIT000111543	0	-	37695766	37751521	0	9	117,122,104,185,346,124,97,169,191	0,21294,29211,35532,40583,42291,43613,44080,55564
chr12	37825184	37825605	A549_Myers.27415	0	.	37825184	37825605	0	1	421	0
chr12	38190565	38190870	A549_Myers.27423	0	.	38190565	38190870	0	1	305	0
chr12	38821844	38822898	B_cells_Cheung.68645	0	.	38821844	38822898	0	1	1054	0
chr12	38858751	38859088	B_cells_Cheung.68661	0	.	38858751	38859088	0	1	337	0
chr12	39305940	39306390	B_cells_Cheung.68750	0	.	39305940	39306390	0	1	450	0
chr12	40264398	40265581	prostate_carcinoma.35450	0	.	40264398	40265581	0	1	1183	0
chr12	40264419	40265569	prostate_normal.20658	0	.	40264419	40265569	0	1	1150	0
chr12	41451748	41452093	B_cells_Cheung.68979	0	.	41451748	41452093	0	1	345	0
chr12	41475112	41475557	B_cells_Cheung.68980	0	.	41475112	41475557	0	1	445	0
chr12	42007093	42010592	HIT000055587	0	-	42007093	42010592	0	1	3499	0
chr12	42339981	42340806	MeWo_Garraway.12387	0	.	42339981	42340806	0	1	825	0
chr12	42397592	42398302	B_Cells_Pritchard.1201207	0	.	42397592	42398302	0	1	710	0
chr12	42400528	42406646	MDAMB468_Thompson.8847	0	.	42400528	42406646	0	1	6118	0
chr12	42404490	42406642	MCF10A_Thompson.7703	0	.	42404490	42406642	0	1	2152	0
chr12	42405671	42406635	MDAMB231_Thompson.7852	0	.	42405671	42406635	0	1	964	0
chr12	42406290	42406646	CD4_Plagnol_activated.22081	0	.	42406290	42406646	0	1	356	0
chr12	43078357	43078748	A549_Myers.27584	0	.	43078357	43078748	0	1	391	0
chr12	43180242	43181105	brain_AmbionMAQC.15587	0	.	43180242	43181105	0	1	863	0
chr12	43182503	43182958	brain_AmbionMAQC.15589	0	.	43182503	43182958	0	1	455	0
chr12	43185563	43186990	CD4_Plagnol_activated.22116	0	.	43185563	43186990	0	1	1427	0
chr12	43185851	43187034	CD4_Plagnol_resting.21531	0	.	43185851	43187034	0	1	1183	0
chr12	43186280	43186782	CD4_Snyder.26910	0	.	43186280	43186782	0	1	502	0
chr12	43733162	43734611	REMC_BreastStem.18600	0	.	43733162	43734611	0	1	1449	0
chr12	43835158	43836940	H1_polyA+.41082	0	.	43835158	43836940	0	1	1782	0
chr12	43841003	43842316	REMC_BreastStem.18602	0	.	43841003	43842316	0	1	1313	0
chr12	43842531	43844399	REMC_BreastStem.18603	0	.	43842531	43844399	0	1	1868	0
chr12	44121222	44121560	B_Cells_Pritchard.1206733	0	-	44121222	44121560	0	1	338	0
chr12	44124220	44127240	REMC_LuminalBreast.36996	0	.	44124220	44127240	0	1	3020	0
chr12	44124260	44126613	B_cells_Cheung.69280	0	.	44124260	44126613	0	1	2353	0
chr12	44125712	44126389	REMC_MyoepithelialBreast.34777	0	.	44125712	44126389	0	1	677	0
chr12	44128824	44129202	B_cells_Cheung.69282	0	.	44128824	44129202	0	1	378	0
chr12	44138351	44140931	REMC_MyoepithelialBreast.34783	0	.	44138351	44140931	0	1	2580	0
chr12	44145010	44145780	REMC_MyoepithelialBreast.34785	0	.	44145010	44145780	0	1	770	0
chr12	44145224	44145776	B_cells_Cheung.69286	0	.	44145224	44145776	0	1	552	0
chr12	44159502	44160346	REMC_MyoepithelialBreast.34786	0	.	44159502	44160346	0	1	844	0
chr12	44330080	44331125	REMC_BreastStem.18604	0	.	44330080	44331125	0	1	1045	0
chr12	44337871	44339716	HIT000259378	0	+	44337871	44339716	0	1	1845	0
chr12	44395696	44396534	REMC_MyoepithelialBreast.34789	0	.	44395696	44396534	0	1	838	0
chr12	44396947	44407990	HepG2_Caltech_ENCODE.12797	0	.	44396947	44407990	0	1	11043	0
chr12	44397607	44408098	H1_polyA+.41081	0	.	44397607	44408098	0	1	10491	0
chr12	44400931	44407825	REMC_MyoepithelialBreast.34792	0	.	44400931	44407825	0	1	6894	0
chr12	44402234	44407825	MIP101.24296	0	.	44402234	44407825	0	1	5591	0
chr12	44403648	44407951	REMC_BreastStem.18615	0	.	44403648	44407951	0	1	4303	0
chr12	44404533	44407872	BT474_Burge_Thompson.11703	0	.	44404533	44407872	0	1	3339	0
chr12	44404835	44407821	K562.16227	0	.	44404835	44407821	0	1	2986	0
chr12	44404890	44408193	B_cells_Cheung.69327	0	.	44404890	44408193	0	1	3303	0
chr12	44404988	44407954	B_Cells_Pritchard.1207301	0	-	44404988	44407954	0	1	2966	0
chr12	44404997	44407902	T47D_Burge_Thompson.10128	0	.	44404997	44407902	0	1	2905	0
chr12	44405062	44408013	MCF7_Burge_Thompson.10504	0	.	44405062	44408013	0	1	2951	0
chr12	44405086	44407854	melanoma_Garraway_short_term_cultures.23863	0	.	44405086	44407854	0	1	2768	0
chr12	44405089	44407919	brain_AmbionMAQC.15610	0	.	44405089	44407919	0	1	2830	0
chr12	44405113	44407845	prostate_carcinoma.35599	0	.	44405113	44407845	0	1	2732	0
chr12	44405306	44407854	CD4_Snyder.27047	0	.	44405306	44407854	0	1	2548	0
chr12	44405355	44407798	ZR751_Thompson.8610	0	.	44405355	44407798	0	1	2443	0
chr12	44405374	44407818	MCF10A_Thompson.7735	0	.	44405374	44407818	0	1	2444	0
chr12	44405478	44407843	BT20_Thompson.7590	0	.	44405478	44407843	0	1	2365	0
chr12	44405620	44407934	MDAMB231_Thompson.7887	0	.	44405620	44407934	0	1	2314	0
chr12	44405620	44407752	HeLa_polyA+_Chen.12939	0	.	44405620	44407752	0	1	2132	0
chr12	44405728	44407930	CD4_Plagnol_resting.21600	0	.	44405728	44407930	0	1	2202	0
chr12	44405769	44407971	NR_028408	0	-	44405769	44407971	0	1	2202	0
chr12	44405781	44407882	prostate_normal.20769	0	.	44405781	44407882	0	1	2101	0
chr12	44405788	44407854	H9_polyA+.16223	0	.	44405788	44407854	0	1	2066	0
chr12	44405793	44407994	CD4_Plagnol_activated.22195	0	.	44405793	44407994	0	1	2201	0
chr12	44405886	44407835	MDAMB468_Thompson.8867	0	.	44405886	44407835	0	1	1949	0
chr12	44406045	44407835	MeWo_Garraway.12418	0	.	44406045	44407835	0	1	1790	0
chr12	44406063	44407797	HIT000098576	0	-	44406063	44407797	0	1	1734	0
chr12	44406700	44407821	lymph_node_Burge.17330	0	.	44406700	44407821	0	1	1121	0
chr12	44406705	44407810	colon_Burge.13512	0	.	44406705	44407810	0	1	1105	0
chr12	44406738	44407814	HME_Burge.14556	0	.	44406738	44407814	0	1	1076	0
chr12	44406847	44408023	A549_Myers.27632	0	.	44406847	44408023	0	1	1176	0
chr12	44407047	44407405	testes_Burge.18570	0	.	44407047	44407405	0	1	358	0
chr12	44407080	44407438	kidney_Gilad.31635	0	.	44407080	44407438	0	1	358	0
chr12	44407111	44407814	MB435_Burge.15130	0	.	44407111	44407814	0	1	703	0
chr12	44407183	44407587	skeletal_muscle_Burge.10457	0	.	44407183	44407587	0	1	404	0
chr12	44407230	44407560	breast_Burge.14402	0	.	44407230	44407560	0	1	330	0
chr12	44407405	44407818	testes_Burge.18571	0	.	44407405	44407818	0	1	413	0
chr12	44590079	44595139	REMC_LuminalBreast.37090	0	.	44590079	44595139	0	1	5060	0
chr12	44590291	44597709	REMC_MyoepithelialBreast.34919	0	.	44590291	44597709	0	1	7418	0
chr12	44593685	44595184	REMC_BreastStem.18618	0	.	44593685	44595184	0	1	1499	0
chr12	44595317	44597934	REMC_LuminalBreast.37091	0	.	44595317	44597934	0	1	2617	0
chr12	44595318	44596403	B_Cells_Pritchard.1214425	0	+	44595318	44596403	0	1	1085	0
chr12	44595335	44596706	REMC_BreastStem.18619	0	.	44595335	44596706	0	1	1371	0
chr12	44595351	44595775	CD4_Plagnol_resting.21614	0	.	44595351	44595775	0	1	424	0
chr12	44595405	44597941	B_cells_Cheung.69334	0	.	44595405	44597941	0	1	2536	0
chr12	44685564	44686353	B_cells_Cheung.69454	0	.	44685564	44686353	0	1	789	0
chr12	44702127	44706237	B_cells_Cheung.69468	0	.	44702127	44706237	0	1	4110	0
chr12	44705188	44705689	REMC_MyoepithelialBreast.34827	0	.	44705188	44705689	0	1	501	0
chr12	44706517	44707745	REMC_MyoepithelialBreast.34828	0	.	44706517	44707745	0	1	1228	0
chr12	44706550	44707994	B_cells_Cheung.69469	0	.	44706550	44707994	0	1	1444	0
chr12	44708076	44711086	B_cells_Cheung.69470	0	.	44708076	44711086	0	1	3010	0
chr12	44728467	44730341	B_cells_Cheung.69479	0	.	44728467	44730341	0	1	1874	0
chr12	44739633	44740168	B_cells_Cheung.69481	0	.	44739633	44740168	0	1	535	0
chr12	44774852	44775781	REMC_MyoepithelialBreast.35967	0	.	44774852	44775781	0	1	929	0
chr12	44776091	44777729	REMC_MyoepithelialBreast.35968	0	.	44776091	44777729	0	1	1638	0
chr12	44781184	44781806	REMC_MyoepithelialBreast.35970	0	.	44781184	44781806	0	1	622	0
chr12	44808804	44813157	REMC_MyoepithelialBreast.35976	0	.	44808804	44813157	0	1	4353	0
chr12	44815591	44823896	REMC_MyoepithelialBreast.35977	0	.	44815591	44823896	0	1	8305	0
chr12	44829756	44838089	REMC_MyoepithelialBreast.35979	0	.	44829756	44838089	0	1	8333	0
chr12	44837158	44838296	REMC_LuminalBreast.37104	0	.	44837158	44838296	0	1	1138	0
chr12	44960958	44962867	B_Cells_Pritchard.1208151	0	.	44960958	44962867	0	1	1909	0
chr12	45013010	45014236	REMC_LuminalBreast.37117	0	.	45013010	45014236	0	1	1226	0
chr12	45018640	45024231	REMC_LuminalBreast.37119	0	.	45018640	45024231	0	1	5591	0
chr12	45018667	45019923	REMC_MyoepithelialBreast.34870	0	.	45018667	45019923	0	1	1256	0
chr12	45019261	45019864	REMC_BreastStem.18626	0	.	45019261	45019864	0	1	603	0
chr12	45020006	45021121	REMC_MyoepithelialBreast.34871	0	.	45020006	45021121	0	1	1115	0
chr12	45020119	45022227	REMC_BreastStem.18627	0	.	45020119	45022227	0	1	2108	0
chr12	45035755	45036795	REMC_MyoepithelialBreast.34880	0	.	45035755	45036795	0	1	1040	0
chr12	45035816	45036519	REMC_BreastStem.18629	0	.	45035816	45036519	0	1	703	0
chr12	45061691	45067908	prostate_carcinoma.35612	0	+	45061691	45067908	0	2	2072,112	0,6105
chr12	45061691	45064444	prostate_carcinoma.35613	0	.	45061691	45064444	0	1	2753	0
chr12	45061888	45063463	REMC_LuminalBreast.37126	0	.	45061888	45063463	0	1	1575	0
chr12	45062244	45063449	HeLa_polyA+_Chen.12954	0	.	45062244	45063449	0	1	1205	0
chr12	45062288	45063540	melanoma_Garraway_short_term_cultures.23900	0	.	45062288	45063540	0	1	1252	0
chr12	45062302	45333974	B_cells_Cheung.69593	0	+	45062302	45333974	0	11	1461,23,23,434,299,133,110,220,590,157,1535	0,1886,2642,5494,6187,72756,87900,94868,102205,189003,270137
chr12	45062338	45063526	liver_polyA+.49083	0	.	45062338	45063526	0	1	1188	0
chr12	45062394	45063446	T47D_Burge_Thompson.10149	0	.	45062394	45063446	0	1	1052	0
chr12	45062430	45068138	BT20_Thompson.7603	0	+	45062430	45068138	0	3	1333,24,342	0,4506,5366
chr12	45062779	45063980	REMC_BreastStem.18632	0	.	45062779	45063980	0	1	1201	0
chr12	45062911	45064280	MCF7_Burge_Thompson.10517	0	.	45062911	45064280	0	1	1369	0
chr12	45063041	45063374	HeLa_polyA-_Chen.6831	0	.	45063041	45063374	0	1	333	0
chr12	45063290	45065664	REMC_MyoepithelialBreast.34928	0	.	45063290	45065664	0	1	2374	0
chr12	45063555	45064241	HeLa_polyA+_Chen.12951	0	.	45063555	45064241	0	1	686	0
chr12	45063585	45063977	liver_polyA+.49084	0	.	45063585	45063977	0	1	392	0
chr12	45063817	45064193	H9_polyA+.16254	0	.	45063817	45064193	0	1	376	0
chr12	45063834	45064157	H1_rRNA-depleted_UCSD_REMC.31744	0	.	45063834	45064157	0	1	323	0
chr12	45063866	45064194	H9_polyA-_Chen.5074	0	.	45063866	45064194	0	1	328	0
chr12	45077588	45078391	H1_polyA+.41533	0	.	45077588	45078391	0	1	803	0
chr12	45079481	45079935	H1_polyA+.41535	0	.	45079481	45079935	0	1	454	0
chr12	45080373	45082229	B_Cells_Pritchard.1208339	0	.	45080373	45082229	0	1	1856	0
chr12	45080376	45081767	B_cells_Cheung.69607	0	.	45080376	45081767	0	1	1391	0
chr12	45080520	45081735	MIP101.24371	0	.	45080520	45081735	0	1	1215	0
chr12	45080926	45082059	H1_polyA+.41537	0	.	45080926	45082059	0	1	1133	0
chr12	45085645	45086165	B_Cells_Pritchard.1208353	0	.	45085645	45086165	0	1	520	0
chr12	45087833	45088672	H1_polyA+.41542	0	.	45087833	45088672	0	1	839	0
chr12	45088298	45089072	B_Cells_Pritchard.1208365	0	.	45088298	45089072	0	1	774	0
chr12	45090348	45099304	B_Cells_Pritchard.1208371	0	+	45090348	45099304	0	4	306,227,865,434	0,6667,7583,8522
chr12	45097931	45100528	B_cells_Cheung.69624	0	.	45097931	45100528	0	1	2597	0
chr12	45099710	45100171	H1_polyA+.41547	0	.	45099710	45100171	0	1	461	0
chr12	45108118	45109853	H1_polyA+.41550	0	.	45108118	45109853	0	1	1735	0
chr12	45119648	45120713	B_Cells_Pritchard.1208469	0	.	45119648	45120713	0	1	1065	0
chr12	45126742	45127044	B_cells_Cheung.69645	0	.	45126742	45127044	0	1	302	0
chr12	45161390	45161695	B_cells_Cheung.69676	0	.	45161390	45161695	0	1	305	0
chr12	45162569	45162971	H1_polyA+.41567	0	.	45162569	45162971	0	1	402	0
chr12	45165213	45168207	B_Cells_Pritchard.1208545	0	.	45165213	45168207	0	1	2994	0
chr12	45165953	45168196	B_cells_Cheung.69680	0	.	45165953	45168196	0	1	2243	0
chr12	45166039	45166812	liver_polyA+.49109	0	.	45166039	45166812	0	1	773	0
chr12	45166479	45168194	H1_polyA+.41569	0	.	45166479	45168194	0	1	1715	0
chr12	45166705	45168205	prostate_carcinoma.35627	0	.	45166705	45168205	0	1	1500	0
chr12	45166870	45168212	liver_polyA+.49110	0	.	45166870	45168212	0	1	1342	0
chr12	45167417	45167867	IMR90_UCSD_REMC.17862	0	+	45167417	45167867	0	1	450	0
chr12	45191015	45191378	IMR90_UCSD_REMC.17867	0	+	45191015	45191378	0	1	363	0
chr12	45192958	45194652	HepG2_Caltech_ENCODE.12835	0	.	45192958	45194652	0	1	1694	0
chr12	45196277	45197621	B_Cells_Pritchard.1208657	0	.	45196277	45197621	0	1	1344	0
chr12	45199280	45199624	IMR90_UCSD_REMC.17874	0	+	45199280	45199624	0	1	344	0
chr12	45199375	45200171	B_cells_Cheung.69702	0	.	45199375	45200171	0	1	796	0
chr12	45199418	45200108	B_Cells_Pritchard.1208663	0	.	45199418	45200108	0	1	690	0
chr12	45200228	45202926	B_Cells_Pritchard.1208665	0	.	45200228	45202926	0	1	2698	0
chr12	45203427	45209866	B_Cells_Pritchard.1208669	0	.	45203427	45209866	0	1	6439	0
chr12	45203434	45209766	B_cells_Cheung.69707	0	.	45203434	45209766	0	1	6332	0
chr12	45205262	45206162	H1_polyA+.41575	0	.	45205262	45206162	0	1	900	0
chr12	45205365	45206567	liver_polyA+.49121	0	.	45205365	45206567	0	1	1202	0
chr12	45207691	45208952	liver_polyA+.49123	0	-	45207691	45208952	0	2	732,149	0,1112
chr12	45207691	45208949	kidney_Gilad.31730	0	-	45207691	45208949	0	2	732,146	0,1112
chr12	45210160	45212738	B_Cells_Pritchard.1208671	0	.	45210160	45212738	0	1	2578	0
chr12	45210184	45211473	B_cells_Cheung.69708	0	.	45210184	45211473	0	1	1289	0
chr12	45210317	45211065	A549_Myers.27674	0	.	45210317	45211065	0	1	748	0
chr12	45210353	45210772	BT474_Burge_Thompson.11715	0	.	45210353	45210772	0	1	419	0
chr12	45211569	45212505	B_cells_Cheung.69709	0	.	45211569	45212505	0	1	936	0
chr12	45229535	45229861	kidney_Gilad.31734	0	.	45229535	45229861	0	1	326	0
chr12	45229535	45229861	liver_polyA+.49135	0	.	45229535	45229861	0	1	326	0
chr12	45248883	45249873	prostate_carcinoma.35628	0	.	45248883	45249873	0	1	990	0
chr12	45249077	45250195	B_cells_Cheung.69733	0	.	45249077	45250195	0	1	1118	0
chr12	45249085	45249974	H1_polyA+.41579	0	.	45249085	45249974	0	1	889	0
chr12	45249086	45250460	B_Cells_Pritchard.1208785	0	.	45249086	45250460	0	1	1374	0
chr12	45271777	45272292	B_cells_Cheung.69736	0	.	45271777	45272292	0	1	515	0
chr12	45271808	45272420	B_Cells_Pritchard.1208839	0	.	45271808	45272420	0	1	612	0
chr12	45278002	45278937	H1_polyA+.41581	0	.	45278002	45278937	0	1	935	0
chr12	45281786	45282164	B_Cells_Pritchard.1208861	0	.	45281786	45282164	0	1	378	0
chr12	45283257	45285606	B_cells_Cheung.69739	0	.	45283257	45285606	0	1	2349	0
chr12	45283302	45286101	B_Cells_Pritchard.1208867	0	.	45283302	45286101	0	1	2799	0
chr12	45288456	45289522	B_Cells_Pritchard.1208877	0	.	45288456	45289522	0	1	1066	0
chr12	45288871	45289327	B_cells_Cheung.69742	0	.	45288871	45289327	0	1	456	0
chr12	45327836	45328328	B_Cells_Pritchard.1208961	0	.	45327836	45328328	0	1	492	0
chr12	45349542	45352635	HepG2_Caltech_ENCODE.12850	0	.	45349542	45352635	0	1	3093	0
chr12	45351942	45357984	B_Cells_Pritchard.1209025	0	-	45351942	45357984	0	2	563,127	0,5915
chr12	45352749	45353562	HepG2_Caltech_ENCODE.12851	0	.	45352749	45353562	0	1	813	0
chr12	45352815	45353497	B_cells_Cheung.69798	0	.	45352815	45353497	0	1	682	0
chr12	45353027	45353904	H1_polyA+.41598	0	.	45353027	45353904	0	1	877	0
chr12	45359721	45361218	H1_polyA+.41601	0	.	45359721	45361218	0	1	1497	0
chr12	45359914	45361423	B_cells_Cheung.69803	0	.	45359914	45361423	0	1	1509	0
chr12	45364594	45366488	B_cells_Cheung.69807	0	.	45364594	45366488	0	1	1894	0
chr12	45364662	45366487	B_Cells_Pritchard.1209079	0	.	45364662	45366487	0	1	1825	0
chr12	45376015	45377962	H1_polyA+.41343	0	.	45376015	45377962	0	1	1947	0
chr12	45377305	45377847	B_cells_Cheung.69815	0	.	45377305	45377847	0	1	542	0
chr12	45377323	45377843	B_Cells_Pritchard.1209099	0	.	45377323	45377843	0	1	520	0
chr12	45377907	45382648	B_cells_Cheung.69816	0	.	45377907	45382648	0	1	4741	0
chr12	45378068	45383445	H1_polyA+.41344	0	.	45378068	45383445	0	1	5377	0
chr12	45389213	45390150	MIP101.24381	0	.	45389213	45390150	0	1	937	0
chr12	45393090	45395753	H1_polyA+.41348	0	.	45393090	45395753	0	1	2663	0
chr12	45394176	45394735	B_cells_Cheung.69829	0	.	45394176	45394735	0	1	559	0
chr12	45394381	45394972	B_Cells_Pritchard.1209137	0	.	45394381	45394972	0	1	591	0
chr12	45394830	45395678	HepG2_Caltech_ENCODE.12853	0	.	45394830	45395678	0	1	848	0
chr12	45396676	45397506	B_cells_Cheung.69832	0	.	45396676	45397506	0	1	830	0
chr12	45396735	45397369	H1_polyA+.41350	0	.	45396735	45397369	0	1	634	0
chr12	45400230	45400863	B_cells_Cheung.69833	0	.	45400230	45400863	0	1	633	0
chr12	45401657	45403971	H1_polyA+.41352	0	.	45401657	45403971	0	1	2314	0
chr12	45402499	45403511	HepG2_Caltech_ENCODE.12854	0	.	45402499	45403511	0	1	1012	0
chr12	45402690	45403094	B_cells_Cheung.69836	0	.	45402690	45403094	0	1	404	0
chr12	45414265	45415423	H1_polyA+.41357	0	.	45414265	45415423	0	1	1158	0
chr12	45415078	45415439	kidney_Gilad.31757	0	.	45415078	45415439	0	1	361	0
chr12	45423135	45426496	B_cells_Cheung.69856	0	.	45423135	45426496	0	1	3361	0
chr12	45423177	45426451	B_Cells_Pritchard.1209243	0	.	45423177	45426451	0	1	3274	0
chr12	45426182	45428882	REMC_LuminalBreast.37142	0	.	45426182	45428882	0	1	2700	0
chr12	45426567	45427377	B_cells_Cheung.69857	0	.	45426567	45427377	0	1	810	0
chr12	45426633	45427340	H1_polyA+.41361	0	.	45426633	45427340	0	1	707	0
chr12	45426782	45427362	B_Cells_Pritchard.1209247	0	.	45426782	45427362	0	1	580	0
chr12	45551933	45553542	B_cells_Cheung.69908	0	.	45551933	45553542	0	1	1609	0
chr12	45554467	45555146	B_Cells_Pritchard.1209725	0	.	45554467	45555146	0	1	679	0
chr12	45573390	45575608	B_cells_Cheung.69919	0	.	45573390	45575608	0	1	2218	0
chr12	45598723	45599061	B_Cells_Pritchard.1209893	0	.	45598723	45599061	0	1	338	0
chr12	45625359	45625978	B_cells_Cheung.69947	0	.	45625359	45625978	0	1	619	0
chr12	45663575	45664068	B_Cells_Pritchard.1210147	0	.	45663575	45664068	0	1	493	0
chr12	45663581	45663945	A549_Myers.27681	0	.	45663581	45663945	0	1	364	0
chr12	45929589	45930792	CD4_Plagnol_activated.22731	0	.	45929589	45930792	0	1	1203	0
chr12	45937105	45938642	CD4_Plagnol_activated.22739	0	.	45937105	45938642	0	1	1537	0
chr12	45937134	45938734	CD4_Plagnol_resting.21884	0	.	45937134	45938734	0	1	1600	0
chr12	45937296	45938717	ZR751_Thompson.8635	0	.	45937296	45938717	0	1	1421	0
chr12	45937339	45938707	B_Cells_Pritchard.1210787	0	-	45937339	45938707	0	1	1368	0
chr12	45937416	45938632	REMC_MyoepithelialBreast.34980	0	.	45937416	45938632	0	1	1216	0
chr12	45937510	45938631	CD4_Snyder.27286	0	.	45937510	45938631	0	1	1121	0
chr12	45937514	45938609	MCF7_Burge_Thompson.10606	0	.	45937514	45938609	0	1	1095	0
chr12	45937521	45938496	prostate_normal.20809	0	.	45937521	45938496	0	1	975	0
chr12	45937907	45938488	prostate_carcinoma.35643	0	.	45937907	45938488	0	1	581	0
chr12	45937961	45938357	testes_Burge.18621	0	.	45937961	45938357	0	1	396	0
chr12	45938040	45938727	MDAMB468_Thompson.8886	0	.	45938040	45938727	0	1	687	0
chr12	45985029	45986688	CD4_Plagnol_resting.21662	0	.	45985029	45986688	0	1	1659	0
chr12	45985036	45986712	CD4_Plagnol_activated.22267	0	.	45985036	45986712	0	1	1676	0
chr12	45985146	45986652	MCF10A_Thompson.7745	0	.	45985146	45986652	0	1	1506	0
chr12	45985527	45986696	MCF7_Burge_Thompson.10527	0	.	45985527	45986696	0	1	1169	0
chr12	45985582	45986695	melanoma_Garraway_short_term_cultures.23938	0	.	45985582	45986695	0	1	1113	0
chr12	45985947	45986707	B_cells_Cheung.69985	0	.	45985947	45986707	0	1	760	0
chr12	45986840	45989768	CD4_Plagnol_activated.22268	0	.	45986840	45989768	0	1	2928	0
chr12	45986849	45987434	CD4_Plagnol_resting.21663	0	.	45986849	45987434	0	1	585	0
chr12	46037831	46038192	B_Cells_Pritchard.1211119	0	.	46037831	46038192	0	1	361	0
chr12	46057631	46057989	A549_Myers.27761	0	.	46057631	46057989	0	1	358	0
chr12	46059421	46059858	K562.16294	0	.	46059421	46059858	0	1	437	0
chr12	46067475	46074444	REMC_MyoepithelialBreast.34985	0	-	46067475	46074444	0	3	881,153,285	0,1545,6684
chr12	46069043	46095271	K562.16298	0	+	46069043	46095271	0	4	462,193,84,138	0,4107,19437,26090
chr12	46104429	46112930	A549_Myers.27764	0	+	46104429	46112930	0	2	372,51	0,8450
chr12	46113920	46114565	MIP101.24399	0	.	46113920	46114565	0	1	645	0
chr12	46258985	46260132	REMC_MyoepithelialBreast.34987	0	.	46258985	46260132	0	1	1147	0
chr12	46284605	46285937	REMC_LuminalBreast.37191	0	.	46284605	46285937	0	1	1332	0
chr12	46287218	46287529	B_Cells_Pritchard.1211739	0	+	46287218	46287529	0	1	311	0
chr12	46291728	46293353	REMC_LuminalBreast.37194	0	.	46291728	46293353	0	1	1625	0
chr12	46318281	46319116	REMC_LuminalBreast.37199	0	.	46318281	46319116	0	1	835	0
chr12	46330774	46332511	B_cells_Cheung.70009	0	.	46330774	46332511	0	1	1737	0
chr12	46331957	46333365	REMC_LuminalBreast.37203	0	.	46331957	46333365	0	1	1408	0
chr12	46332584	46333124	B_Cells_Pritchard.1211863	0	.	46332584	46333124	0	1	540	0
chr12	46332623	46333229	B_cells_Cheung.70010	0	.	46332623	46333229	0	1	606	0
chr12	46335405	46338667	B_cells_Cheung.70013	0	.	46335405	46338667	0	1	3262	0
chr12	46407803	46411179	B_Cells_Pritchard.1211903	0	.	46407803	46411179	0	1	3376	0
chr12	46408200	46410648	HIT000012337	0	-	46408200	46410648	0	1	2448	0
chr12	46408440	46409265	H1_polyA+.41439	0	.	46408440	46409265	0	1	825	0
chr12	46408472	46411170	MIP101.24414	0	.	46408472	46411170	0	1	2698	0
chr12	46410054	46411462	REMC_LuminalBreast.37213	0	.	46410054	46411462	0	1	1408	0
chr12	46513425	46514764	REMC_BreastStem.18645	0	.	46513425	46514764	0	1	1339	0
chr12	46519032	46519726	B_Cells_Pritchard.1212203	0	.	46519032	46519726	0	1	694	0
chr12	46624800	46625132	A549_Myers.27820	0	.	46624800	46625132	0	1	332	0
chr12	46630060	46630455	A549_Myers.27824	0	.	46630060	46630455	0	1	395	0
chr12	46691353	46705519	HIT000048030	0	-	46691353	46705519	0	4	255,141,79,2635	0,2750,5899,11531
chr12	46698001	46699136	prostate_carcinoma.35712	0	.	46698001	46699136	0	1	1135	0
chr12	46699775	46705432	HIT000091862	0	-	46699775	46705432	0	2	444,563	0,5094
chr12	46699819	46705432	XR_040710	0	-	46699819	46705432	0	2	400,564	0,5049
chr12	46707139	46708283	REMC_MyoepithelialBreast.35028	0	.	46707139	46708283	0	1	1144	0
chr12	46709960	46711037	REMC_MyoepithelialBreast.35029	0	.	46709960	46711037	0	1	1077	0
chr12	46713056	46718482	B_Cells_Pritchard.1212705	0	.	46713056	46718482	0	1	5426	0
chr12	46713410	46718648	B_cells_Cheung.70090	0	.	46713410	46718648	0	1	5238	0
chr12	46713830	46715784	CD4_Plagnol_activated.22321	0	.	46713830	46715784	0	1	1954	0
chr12	46714124	46715418	melanoma_Garraway_short_term_cultures.23970	0	.	46714124	46715418	0	1	1294	0
chr12	46714203	46716148	H1_polyA+.41449	0	.	46714203	46716148	0	1	1945	0
chr12	46715039	46715723	CD4_Plagnol_resting.21712	0	.	46715039	46715723	0	1	684	0
chr12	46715533	46717136	melanoma_Garraway_short_term_cultures.23971	0	.	46715533	46717136	0	1	1603	0
chr12	46849013	46849767	H1_polyA+.41465	0	.	46849013	46849767	0	1	754	0
chr12	46849159	46862389	pHIT000111606	0	-	46849159	46862389	0	2	363,75	0,13155
chr12	46878158	46878836	A549_Myers.27865	0	.	46878158	46878836	0	1	678	0
chr12	46878402	46880575	K562.16321	0	.	46878402	46880575	0	1	2173	0
chr12	46878417	46880402	REMC_MyoepithelialBreast.35052	0	.	46878417	46880402	0	1	1985	0
chr12	46878418	46880454	MIP101.24442	0	.	46878418	46880454	0	1	2036	0
chr12	46878424	46879274	CD4_Snyder.27350	0	.	46878424	46879274	0	1	850	0
chr12	46878426	46879128	prostate_carcinoma.35720	0	.	46878426	46879128	0	1	702	0
chr12	46878433	46879070	T47D_Burge_Thompson.10180	0	.	46878433	46879070	0	1	637	0
chr12	46878437	46879004	prostate_normal.20862	0	.	46878437	46879004	0	1	567	0
chr12	47016150	47017619	H1_polyA+.41471	0	.	47016150	47017619	0	1	1469	0
chr12	47016194	47017625	B_cells_Cheung.70114	0	.	47016194	47017625	0	1	1431	0
chr12	47016199	47017612	prostate_normal.20866	0	.	47016199	47017612	0	1	1413	0
chr12	47016600	47017647	HeLa_polyA+_Chen.13086	0	.	47016600	47017647	0	1	1047	0
chr12	47016654	47017620	brain_AmbionMAQC.15661	0	.	47016654	47017620	0	1	966	0
chr12	47017012	47017619	melanoma_Garraway_short_term_cultures.23987	0	.	47017012	47017619	0	1	607	0
chr12	47017062	47017616	CD4_Plagnol_activated.22352	0	.	47017062	47017616	0	1	554	0
chr12	47017247	47017648	HepG2_Caltech_ENCODE.12892	0	.	47017247	47017648	0	1	401	0
chr12	47017923	47018336	NEC_from_H9.26681	0	.	47017923	47018336	0	1	413	0
chr12	47034507	47036129	K562.16331	0	.	47034507	47036129	0	1	1622	0
chr12	47046163	47046639	prostate_carcinoma.35735	0	.	47046163	47046639	0	1	476	0
chr12	47046175	47048005	HIT000048968	0	+	47046175	47048005	0	1	1830	0
chr12	47065154	47066559	REMC_LuminalBreast.37257	0	.	47065154	47066559	0	1	1405	0
chr12	47065385	47066334	prostate_carcinoma.35736	0	.	47065385	47066334	0	1	949	0
chr12	47123828	47124886	REMC_MyoepithelialBreast.35059	0	.	47123828	47124886	0	1	1058	0
chr12	47125173	47129444	REMC_LuminalBreast.37270	0	.	47125173	47129444	0	1	4271	0
chr12	47125241	47126741	prostate_carcinoma.35738	0	.	47125241	47126741	0	1	1500	0
chr12	47125698	47126260	brain_AmbionMAQC.15669	0	.	47125698	47126260	0	1	562	0
chr12	47125935	47126722	prostate_normal.20872	0	.	47125935	47126722	0	1	787	0
chr12	47142356	47143634	REMC_LuminalBreast.37272	0	.	47142356	47143634	0	1	1278	0
chr12	47143684	47144375	REMC_LuminalBreast.37273	0	.	47143684	47144375	0	1	691	0
chr12	47157754	47158540	REMC_LuminalBreast.37279	0	.	47157754	47158540	0	1	786	0
chr12	47297531	47299372	REMC_MyoepithelialBreast.35064	0	.	47297531	47299372	0	1	1841	0
chr12	47315748	47317000	REMC_LuminalBreast.37289	0	.	47315748	47317000	0	1	1252	0
chr12	47316061	47316764	REMC_BreastStem.18739	0	.	47316061	47316764	0	1	703	0
chr12	47322638	47324413	REMC_LuminalBreast.37292	0	.	47322638	47324413	0	1	1775	0
chr12	47324324	47325239	REMC_MyoepithelialBreast.35078	0	.	47324324	47325239	0	1	915	0
chr12	47324351	47325227	B_cells_Cheung.70141	0	.	47324351	47325227	0	1	876	0
chr12	47557174	47558086	REMC_BreastStem.18752	0	.	47557174	47558086	0	1	912	0
chr12	47562280	47565306	REMC_LuminalBreast.37314	0	.	47562280	47565306	0	1	3026	0
chr12	47563506	47564276	A549_Myers.27913	0	.	47563506	47564276	0	1	770	0
chr12	47563603	47566822	REMC_BreastStem.18754	0	.	47563603	47566822	0	1	3219	0
chr12	47569049	47570260	REMC_LuminalBreast.37315	0	.	47569049	47570260	0	1	1211	0
chr12	47570797	47571136	A549_Myers.27914	0	.	47570797	47571136	0	1	339	0
chr12	47575494	47576587	REMC_MyoepithelialBreast.35119	0	.	47575494	47576587	0	1	1093	0
chr12	47576112	47576833	REMC_BreastStem.18759	0	.	47576112	47576833	0	1	721	0
chr12	47612401	47613638	ZR751_Thompson.8743	0	.	47612401	47613638	0	1	1237	0
chr12	47612454	47613679	brain_AmbionMAQC.15820	0	.	47612454	47613679	0	1	1225	0
chr12	47613756	47614719	HepG2_Caltech_ENCODE.12914	0	.	47613756	47614719	0	1	963	0
chr12	47739828	47740135	HeLa_Bartel_miR-155_12hr.12102	0	.	47739828	47740135	0	1	307	0
chr12	47739908	47740470	lymph_node_Burge.17585	0	.	47739908	47740470	0	1	562	0
chr12	47740260	47740835	CD4_Snyder.27437	0	.	47740260	47740835	0	1	575	0
chr12	47740379	47740828	H9_polyA-_Chen.5134	0	.	47740379	47740828	0	1	449	0
chr12	47740416	47741338	HeLa_polyA-_Chen.6903	0	.	47740416	47741338	0	1	922	0
chr12	47751081	47752166	REMC_LuminalBreast.37341	0	.	47751081	47752166	0	1	1085	0
chr12	47751255	47751876	prostate_carcinoma.35861	0	.	47751255	47751876	0	1	621	0
chr12	47751313	47752155	REMC_BreastStem.18778	0	.	47751313	47752155	0	1	842	0
chr12	47751431	47752032	B_Cells_Pritchard.1215629	0	-	47751431	47752032	0	1	601	0
chr12	47872696	47873640	REMC_LuminalBreast.37415	0	.	47872696	47873640	0	1	944	0
chr12	47954697	47955194	B_cells_Cheung.70337	0	.	47954697	47955194	0	1	497	0
chr12	47955706	47957248	REMC_MyoepithelialBreast.35191	0	.	47955706	47957248	0	1	1542	0
chr12	47956295	47957646	REMC_LuminalBreast.37417	0	.	47956295	47957646	0	1	1351	0
chr12	47959101	47963035	Rinn_00020244	0	-	47959101	47963035	0	2	1649,888	0,3046
chr12	47959102	47963035	ENST00000514443	0	-	47959102	47963035	0	2	1648,887	0,3046
chr12	47959102	47963035	HIT000022934	0	-	47959102	47963035	0	2	1663,872	0,3061
chr12	47963693	47964372	melanoma_Garraway_short_term_cultures.24089	0	.	47963693	47964372	0	1	679	0
chr12	47963816	47964419	REMC_LuminalBreast.37418	0	.	47963816	47964419	0	1	603	0
chr12	48025567	48026032	MCF7_Burge_Thompson.10647	0	.	48025567	48026032	0	1	465	0
chr12	48214057	48214575	B_cells_Cheung.70389	0	.	48214057	48214575	0	1	518	0
chr12	48217441	48218206	B_Cells_Pritchard.1215461	0	.	48217441	48218206	0	1	765	0
chr12	48217481	48218124	B_cells_Cheung.70393	0	.	48217481	48218124	0	1	643	0
chr12	48249618	48259288	REMC_LuminalBreast.37432	0	.	48249618	48259288	0	1	9670	0
chr12	48249979	48252268	REMC_BreastStem.18806	0	.	48249979	48252268	0	1	2289	0
chr12	48250378	48260051	H1_polyA+.41657	0	.	48250378	48260051	0	1	9673	0
chr12	48255752	48259125	CD4_Plagnol_activated.22523	0	.	48255752	48259125	0	1	3373	0
chr12	48256469	48259139	prostate_carcinoma.35940	0	.	48256469	48259139	0	1	2670	0
chr12	48256565	48259026	melanoma_Garraway_short_term_cultures.24149	0	.	48256565	48259026	0	1	2461	0
chr12	48256580	48259149	MIP101.24572	0	.	48256580	48259149	0	1	2569	0
chr12	48256630	48258068	K562.16429	0	.	48256630	48258068	0	1	1438	0
chr12	48256804	48258443	CD4_Plagnol_resting.21924	0	.	48256804	48258443	0	1	1639	0
chr12	48256911	48258241	A549_Myers.28029	0	.	48256911	48258241	0	1	1330	0
chr12	48257324	48258278	MeWo_Garraway.12566	0	.	48257324	48258278	0	1	954	0
chr12	48257620	48258366	HeLa_polyA+_Chen.13172	0	.	48257620	48258366	0	1	746	0
chr12	48259246	48259859	MIP101.24573	0	.	48259246	48259859	0	1	613	0
chr12	48259254	48260045	CD4_Plagnol_activated.22524	0	.	48259254	48260045	0	1	791	0
chr12	48259301	48259945	melanoma_Garraway_short_term_cultures.24150	0	.	48259301	48259945	0	1	644	0
chr12	48259315	48259771	MCF7_Burge_Thompson.10661	0	.	48259315	48259771	0	1	456	0
chr12	48259323	48259887	A549_Myers.28032	0	.	48259323	48259887	0	1	564	0
chr12	48259338	48261935	REMC_LuminalBreast.37433	0	.	48259338	48261935	0	1	2597	0
chr12	48259369	48259965	HeLa_polyA+_Chen.13174	0	.	48259369	48259965	0	1	596	0
chr12	48259431	48259952	prostate_carcinoma.35941	0	.	48259431	48259952	0	1	521	0
chr12	48288018	48288943	REMC_BreastStem.18885	0	.	48288018	48288943	0	1	925	0
chr12	48290845	48293355	REMC_LuminalBreast.37439	0	.	48290845	48293355	0	1	2510	0
chr12	48291358	48293329	B_cells_Cheung.71623	0	.	48291358	48293329	0	1	1971	0
chr12	48291819	48293327	REMC_MyoepithelialBreast.35297	0	.	48291819	48293327	0	1	1508	0
chr12	48292267	48293327	melanoma_Garraway_short_term_cultures.24164	0	.	48292267	48293327	0	1	1060	0
chr12	48292588	48293314	H1_polyA+.41666	0	.	48292588	48293314	0	1	726	0
chr12	48292744	48293651	REMC_BreastStem.18886	0	.	48292744	48293651	0	1	907	0
chr12	48461340	48468736	REMC_BreastStem.18823	0	.	48461340	48468736	0	1	7396	0
chr12	48461526	48462956	melanoma_Garraway_short_term_cultures.24187	0	.	48461526	48462956	0	1	1430	0
chr12	48463099	48465174	melanoma_Garraway_short_term_cultures.24188	0	.	48463099	48465174	0	1	2075	0
chr12	48463260	48464801	B_cells_Cheung.70419	0	.	48463260	48464801	0	1	1541	0
chr12	48463412	48464803	CD4_Plagnol_activated.22549	0	.	48463412	48464803	0	1	1391	0
chr12	48623506	48624603	MIP101.24612	0	.	48623506	48624603	0	1	1097	0
chr12	48625254	48626398	MIP101.24613	0	.	48625254	48626398	0	1	1144	0
chr12	48712512	48713714	B_Cells_Pritchard.1216641	0	.	48712512	48713714	0	1	1202	0
chr12	48712760	48713228	A549_Myers.28145	0	.	48712760	48713228	0	1	468	0
chr12	48713275	48713631	BT474_Burge_Thompson.11873	0	.	48713275	48713631	0	1	356	0
chr12	48720685	48721072	A549_Myers.28147	0	.	48720685	48721072	0	1	387	0
chr12	48805136	48805747	CD4_Plagnol_activated.22585	0	.	48805136	48805747	0	1	611	0
chr12	48805137	48805802	CD4_Plagnol_resting.22006	0	.	48805137	48805802	0	1	665	0
chr12	48805139	48806190	melanoma_Garraway_short_term_cultures.24243	0	.	48805139	48806190	0	1	1051	0
chr12	48849001	48849572	REMC_MyoepithelialBreast.35534	0	.	48849001	48849572	0	1	571	0
chr12	48964977	48965383	MIP101.24886	0	.	48964977	48965383	0	1	406	0
chr12	48964977	48965526	prostate_carcinoma.36027	0	.	48964977	48965526	0	1	549	0
chr12	48977662	48978752	B_Cells_Pritchard.1217079	0	+	48977662	48978752	0	1	1090	0
chr12	48991298	48991794	B_cells_Cheung.70549	0	.	48991298	48991794	0	1	496	0
chr12	48997044	48997720	K562.16502	0	.	48997044	48997720	0	1	676	0
chr12	49002158	49003699	REMC_LuminalBreast.37580	0	.	49002158	49003699	0	1	1541	0
chr12	49002354	49002891	HeLa_polyA+_Chen.13256	0	.	49002354	49002891	0	1	537	0
chr12	49002790	49003242	K562.16505	0	.	49002790	49003242	0	1	452	0
chr12	49003106	49003675	B_cells_Cheung.70567	0	.	49003106	49003675	0	1	569	0
chr12	49003142	49003666	HeLa_polyA+_Chen.13257	0	.	49003142	49003666	0	1	524	0
chr12	49003325	49003674	K562.16506	0	.	49003325	49003674	0	1	349	0
chr12	49003831	49005129	B_cells_Cheung.70568	0	.	49003831	49005129	0	1	1298	0
chr12	49003832	49005154	H1_polyA+.41802	0	.	49003832	49005154	0	1	1322	0
chr12	49003940	49006116	REMC_LuminalBreast.37581	0	.	49003940	49006116	0	1	2176	0
chr12	49004026	49004497	brain_AmbionMAQC.15826	0	.	49004026	49004497	0	1	471	0
chr12	49172261	49173367	REMC_MyoepithelialBreast.35361	0	.	49172261	49173367	0	1	1106	0
chr12	49176290	49176677	REMC_MyoepithelialBreast.35363	0	.	49176290	49176677	0	1	387	0
chr12	49431380	49433766	H1_polyA+.41957	0	.	49431380	49433766	0	1	2386	0
chr12	49440618	49441420	REMC_MyoepithelialBreast.35442	0	.	49440618	49441420	0	1	802	0
chr12	49503805	49510863	REMC_MyoepithelialBreast.35459	0	.	49503805	49510863	0	1	7058	0
chr12	49507160	49510352	REMC_LuminalBreast.37767	0	.	49507160	49510352	0	1	3192	0
chr12	49508051	49509280	B_cells_Cheung.70707	0	.	49508051	49509280	0	1	1229	0
chr12	49511593	49514324	REMC_MyoepithelialBreast.35460	0	.	49511593	49514324	0	1	2731	0
chr12	49513397	49515594	REMC_LuminalBreast.37768	0	.	49513397	49515594	0	1	2197	0
chr12	49572929	49576232	REMC_LuminalBreast.37642	0	.	49572929	49576232	0	1	3303	0
chr12	49579852	49582532	REMC_LuminalBreast.37644	0	.	49579852	49582532	0	1	2680	0
chr12	49581783	49582525	prostate_carcinoma.36150	0	.	49581783	49582525	0	1	742	0
chr12	49582704	49586132	REMC_LuminalBreast.37645	0	.	49582704	49586132	0	1	3428	0
chr12	49583164	49584664	REMC_MyoepithelialBreast.35495	0	.	49583164	49584664	0	1	1500	0
chr12	49584753	49585702	REMC_MyoepithelialBreast.35496	0	.	49584753	49585702	0	1	949	0
chr12	49584814	49585785	REMC_BreastStem.18913	0	.	49584814	49585785	0	1	971	0
chr12	49587820	49588488	REMC_LuminalBreast.37646	0	.	49587820	49588488	0	1	668	0
chr12	49587826	49588533	REMC_MyoepithelialBreast.35497	0	.	49587826	49588533	0	1	707	0
chr12	49590791	49592075	REMC_LuminalBreast.37648	0	.	49590791	49592075	0	1	1284	0
chr12	49595319	49602958	REMC_LuminalBreast.37650	0	.	49595319	49602958	0	1	7639	0
chr12	49597717	49602249	REMC_MyoepithelialBreast.35505	0	.	49597717	49602249	0	1	4532	0
chr12	49771463	49772738	prostate_carcinoma.36488	0	.	49771463	49772738	0	1	1275	0
chr12	49771481	49772790	H1_polyA+.41963	0	.	49771481	49772790	0	1	1309	0
chr12	49772083	49772771	B_cells_Cheung.70840	0	.	49772083	49772771	0	1	688	0
chr12	49772130	49772628	HeLa_polyA+_Chen.13287	0	.	49772130	49772628	0	1	498	0
chr12	49957939	49959042	B_cells_Cheung.70889	0	.	49957939	49959042	0	1	1103	0
chr12	50217388	50217695	A549_Myers.28297	0	.	50217388	50217695	0	1	307	0
chr12	50252257	50254459	MIP101.24785	0	.	50252257	50254459	0	1	2202	0
chr12	50253336	50254460	H1_polyA+.42059	0	.	50253336	50254460	0	1	1124	0
chr12	50257008	50258667	MIP101.24787	0	.	50257008	50258667	0	1	1659	0
chr12	50259220	50260518	H1_polyA+.42062	0	.	50259220	50260518	0	1	1298	0
chr12	50259251	50260269	MIP101.24788	0	.	50259251	50260269	0	1	1018	0
chr12	50260672	50263099	H1_polyA+.42063	0	.	50260672	50263099	0	1	2427	0
chr12	50493026	50493802	REMC_MyoepithelialBreast.35625	0	.	50493026	50493802	0	1	776	0
chr12	50493834	50495314	liver_polyA+.49947	0	.	50493834	50495314	0	1	1480	0
chr12	50493867	50494545	H1_polyA+.42184	0	.	50493867	50494545	0	1	678	0
chr12	50493972	50495891	prostate_carcinoma.36300	0	.	50493972	50495891	0	1	1919	0
chr12	50493996	50494703	A549_Myers.28330	0	.	50493996	50494703	0	1	707	0
chr12	50494430	50495656	REMC_MyoepithelialBreast.35626	0	.	50494430	50495656	0	1	1226	0
chr12	50494435	50495940	prostate_normal.21180	0	.	50494435	50495940	0	1	1505	0
chr12	50494477	50494850	adipose_Burge.14033	0	.	50494477	50494850	0	1	373	0
chr12	50494488	50495686	REMC_LuminalBreast.37836	0	.	50494488	50495686	0	1	1198	0
chr12	50495758	50496533	REMC_MyoepithelialBreast.35627	0	.	50495758	50496533	0	1	775	0
chr12	50495964	50496520	prostate_carcinoma.36301	0	.	50495964	50496520	0	1	556	0
chr12	50496003	50496482	prostate_normal.21181	0	.	50496003	50496482	0	1	479	0
chr12	50515136	50525478	khalil_482	0	.	50515136	50525478	0	10	83,1108,134,225,210,323,311,81,229,131	0,1031,2463,3824,4319,4880,5846,6438,6992,10211
chr12	50518137	50560077	HIT000306970	0	+	50518137	50560077	0	2	5821,142	0,41798
chr12	50520128	50520511	liver_polyA+.49960	0	.	50520128	50520511	0	1	383	0
chr12	50523545	50526162	H1_polyA+.42198	0	.	50523545	50526162	0	1	2617	0
chr12	50526285	50527038	REMC_MyoepithelialBreast.35633	0	.	50526285	50527038	0	1	753	0
chr12	50526989	50527614	A549_Myers.28338	0	.	50526989	50527614	0	1	625	0
chr12	50528009	50528856	A549_Myers.28339	0	.	50528009	50528856	0	1	847	0
chr12	50529713	50531216	prostate_carcinoma.36305	0	.	50529713	50531216	0	1	1503	0
chr12	50529924	50530958	REMC_MyoepithelialBreast.35634	0	.	50529924	50530958	0	1	1034	0
chr12	50535952	50536298	B_Cells_Pritchard.1220735	0	.	50535952	50536298	0	1	346	0
chr12	50536003	50536338	A549_Myers.28340	0	.	50536003	50536338	0	1	335	0
chr12	50537016	50537783	H1_polyA+.42200	0	.	50537016	50537783	0	1	767	0
chr12	50548850	50549371	A549_Myers.28341	0	.	50548850	50549371	0	1	521	0
chr12	50555891	50556202	B_cells_Cheung.70974	0	.	50555891	50556202	0	1	311	0
chr12	50576943	50577719	B_Cells_Pritchard.1220895	0	.	50576943	50577719	0	1	776	0
chr12	50580673	50581404	A549_Myers.28343	0	.	50580673	50581404	0	1	731	0
chr12	51921831	51922777	A549_Myers.28627	0	.	51921831	51922777	0	1	946	0
chr12	51921885	51922852	H1_polyA+.42258	0	.	51921885	51922852	0	1	967	0
chr12	52024548	52025249	A549_Myers.28641	0	.	52024548	52025249	0	1	701	0
chr12	52025420	52025795	B_Cells_Pritchard.1225055	0	.	52025420	52025795	0	1	375	0
chr12	52032750	52033119	A549_Myers.28644	0	.	52032750	52033119	0	1	369	0
chr12	52051248	52051929	A549_Myers.28645	0	.	52051248	52051929	0	1	681	0
chr12	52317823	52318181	B_cells_Cheung.71377	0	.	52317823	52318181	0	1	358	0
chr12	52322313	52323939	H1_polyA+.42282	0	.	52322313	52323939	0	1	1626	0
chr12	52322340	52323843	REMC_LuminalBreast.38105	0	.	52322340	52323843	0	1	1503	0
chr12	52324205	52325071	H1_polyA+.42283	0	.	52324205	52325071	0	1	866	0
chr12	52324371	52324987	MIP101.25095	0	.	52324371	52324987	0	1	616	0
chr12	52336915	52340635	B_Cells_Pritchard.1230231	0	-	52336915	52340635	0	2	517,2243	0,1477
chr12	52338317	52340624	H1_polyA+.42289	0	.	52338317	52340624	0	1	2307	0
chr12	52338376	52340650	B_cells_Cheung.71395	0	.	52338376	52340650	0	1	2274	0
chr12	52339090	52340455	melanoma_Garraway_short_term_cultures.24624	0	.	52339090	52340455	0	1	1365	0
chr12	52375595	52377242	Rinn_00020432	0	+	52375595	52377242	0	2	239,811	0,836
chr12	52388686	52390043	brain_AmbionMAQC.15995	0	.	52388686	52390043	0	1	1357	0
chr12	52388693	52390059	CD4_Plagnol_resting.22356	0	.	52388693	52390059	0	1	1366	0
chr12	52418217	52419645	A549_Myers.28674	0	.	52418217	52419645	0	1	1428	0
chr12	52426095	52432009	Rinn_00020789	0	-	52426095	52432009	0	4	503,142,650,186	0,662,4271,5728
chr12	52426394	52437496	B_cells_Cheung.71415	0	-	52426394	52437496	0	2	505,1626	0,9476
chr12	52426746	52431947	Rinn_00021315	0	-	52426746	52431947	0	3	153,650,124	0,3620,5077
chr12	52430367	52431006	brain_AmbionMAQC.16004	0	.	52430367	52431006	0	1	639	0
chr12	52434848	52435262	B_Cells_Pritchard.1225823	0	+	52434848	52435262	0	1	414	0
chr12	52438999	52440469	B_cells_Cheung.71421	0	.	52438999	52440469	0	1	1470	0
chr12	52440608	52440917	B_cells_Cheung.71422	0	.	52440608	52440917	0	1	309	0
chr12	52441060	52444197	B_cells_Cheung.71416	0	.	52441060	52444197	0	1	3137	0
chr12	52441085	52442777	B_Cells_Pritchard.1225859	0	.	52441085	52442777	0	1	1692	0
chr12	52446708	52448047	B_cells_Cheung.71426	0	.	52446708	52448047	0	1	1339	0
chr12	52446854	52448024	B_Cells_Pritchard.1225875	0	.	52446854	52448024	0	1	1170	0
chr12	52456353	52457930	B_cells_Cheung.71433	0	.	52456353	52457930	0	1	1577	0
chr12	52478015	52479398	B_cells_Cheung.71450	0	.	52478015	52479398	0	1	1383	0
chr12	52483753	52485587	B_Cells_Pritchard.1226087	0	.	52483753	52485587	0	1	1834	0
chr12	52493216	52493537	B_cells_Cheung.71457	0	.	52493216	52493537	0	1	321	0
chr12	52499417	52499907	B_Cells_Pritchard.1226153	0	.	52499417	52499907	0	1	490	0
chr12	52504189	52504633	B_Cells_Pritchard.1226169	0	.	52504189	52504633	0	1	444	0
chr12	52504894	52505637	B_cells_Cheung.71463	0	.	52504894	52505637	0	1	743	0
chr12	52578377	52589963	B_Cells_Pritchard.1226471	0	-	52578377	52589963	0	2	3703,26	0,11560
chr12	52578383	52580385	B_cells_Cheung.71487	0	.	52578383	52580385	0	1	2002	0
chr12	52608005	52608695	B_Cells_Pritchard.1226521	0	.	52608005	52608695	0	1	690	0
chr12	52608110	52608536	A549_Myers.28680	0	.	52608110	52608536	0	1	426	0
chr12	52615169	52616406	ZR751_Thompson.8918	0	.	52615169	52616406	0	1	1237	0
chr12	52615399	52616576	HME_Burge.15109	0	.	52615399	52616576	0	1	1177	0
chr12	52615709	52616403	A549_Myers.28683	0	.	52615709	52616403	0	1	694	0
chr12	52617041	52617769	A549_Myers.28684	0	.	52617041	52617769	0	1	728	0
chr12	52638019	52638576	adipose_Burge.14194	0	.	52638019	52638576	0	1	557	0
chr12	52640846	52648401	pHIT000111756	0	-	52640846	52648401	0	2	834,117	0,7438
chr12	52641025	52641328	A549_Myers.28692	0	.	52641025	52641328	0	1	303	0
chr12	52641389	52641735	A549_Myers.28693	0	.	52641389	52641735	0	1	346	0
chr12	52642266	52644172	MCF10A_Thompson.8007	0	.	52642266	52644172	0	1	1906	0
chr12	52642362	52644740	BT474_Burge_Thompson.12212	0	.	52642362	52644740	0	1	2378	0
chr12	52642362	52648782	NR_003716	0	-	52642362	52648782	0	6	1813,53,124,102,126,115	0,1919,3652,3964,4957,6305
chr12	52642362	52647515	BT474_Burge_Thompson.12211	0	-	52642362	52647515	0	4	1813,124,102,196	0,3652,3964,4957
chr12	52642363	52648833	MDAMB468_Thompson.9202	0	-	52642363	52648833	0	5	1812,124,106,234,166	0,3651,3959,4956,6304
chr12	52642364	52644508	BT20_Thompson.7856	0	.	52642364	52644508	0	1	2144	0
chr12	52642364	52647398	HIT000043614	0	-	52642364	52647398	0	5	1811,53,124,102,79	0,1917,3650,3962,4955
chr12	52642364	52649313	BT20_Thompson.7855	0	-	52642364	52649313	0	6	1811,53,124,102,126,646	0,1917,3650,3962,4955,6303
chr12	52642364	52646572	ZR751_Thompson.8989	0	-	52642364	52646572	0	2	3774,246	0,3962
chr12	52642389	52644371	MCF7_Burge_Thompson.10913	0	.	52642389	52644371	0	1	1982	0
chr12	52642389	52649950	MCF7_Burge_Thompson.10915	0	-	52642389	52649950	0	3	1786,805,1283	0,3234,6278
chr12	52642485	52648727	HIT000394652	0	-	52642485	52648727	0	6	1690,53,124,102,126,60	0,1796,3529,3841,4834,6182
chr12	52642612	52644316	prostate_carcinoma.36533	0	-	52642612	52644316	0	2	1563,36	0,1668
chr12	52643599	52644150	A549_Myers.28695	0	.	52643599	52644150	0	1	551	0
chr12	52643763	52644159	prostate_normal.21352	0	.	52643763	52644159	0	1	396	0
chr12	52644595	52645784	BT20_Thompson.7857	0	.	52644595	52645784	0	1	1189	0
chr12	52645041	52645774	prostate_carcinoma.36534	0	.	52645041	52645774	0	1	733	0
chr12	52645061	52646837	BT474_Burge_Thompson.12213	0	.	52645061	52646837	0	1	1776	0
chr12	52645551	52646167	MCF10A_Thompson.8009	0	.	52645551	52646167	0	1	616	0
chr12	52646021	52647420	prostate_carcinoma.36535	0	-	52646021	52647420	0	2	89,1094	0,305
chr12	52646168	52647420	prostate_carcinoma.36536	0	.	52646168	52647420	0	1	1252	0
chr12	52646183	52647119	MCF7_Burge_Thompson.10914	0	.	52646183	52647119	0	1	936	0
chr12	52646534	52648157	MCF10A_Thompson.8010	0	.	52646534	52648157	0	1	1623	0
chr12	52646600	52647253	BT20_Thompson.7858	0	.	52646600	52647253	0	1	653	0
chr12	52647029	52649985	BT474_Burge_Thompson.12214	0	.	52647029	52649985	0	1	2956	0
chr12	52648981	52650313	HeLa_polyA+_Chen.13468	0	.	52648981	52650313	0	1	1332	0
chr12	52650089	52651557	BT474_Burge_Thompson.12215	0	.	52650089	52651557	0	1	1468	0
chr12	52661544	52664378	HIT000093800	0	-	52661544	52664378	0	1	2834	0
chr12	52739822	52757224	pHIT000021823	0	-	52739822	52757224	0	3	209,141,40	0,1792,17362
chr12	52758889	52761874	NR_026658	0	-	52758889	52761874	0	3	602,118,185	0,1388,2800
chr12	52759143	52759495	B_cells_Cheung.71518	0	.	52759143	52759495	0	1	352	0
chr12	52759143	52762190	B_Cells_Pritchard.1226953	0	-	52759143	52762190	0	3	348,65,400	0,1134,2647
chr12	52762321	52762658	B_Cells_Pritchard.1226961	0	.	52762321	52762658	0	1	337	0
chr12	52792651	52816157	pHIT000111770	0	+	52792651	52816157	0	5	124,137,101,89,65	0,17052,19138,22560,23441
chr12	52806041	52812909	REMC_MyoepithelialBreast.35869	0	+	52806041	52812909	0	2	622,869	0,5999
chr12	52806043	52813823	REMC_LuminalBreast.38122	0	+	52806043	52813823	0	3	620,35,1783	0,5812,5997
chr12	52806055	52812896	B_cells_Cheung.71526	0	+	52806055	52812896	0	2	608,856	0,5985
chr12	52806068	52812949	BT474_Burge_Thompson.12092	0	+	52806068	52812949	0	2	595,909	0,5972
chr12	52806068	52806729	BT474_Burge_Thompson.12093	0	.	52806068	52806729	0	1	661	0
chr12	52806070	52812809	prostate_carcinoma.36549	0	+	52806070	52812809	0	2	593,769	0,5970
chr12	52806070	52810173	prostate_carcinoma.36546	0	.	52806070	52810173	0	1	4103	0
chr12	52806073	52808487	MIP101.25012	0	.	52806073	52808487	0	1	2414	0
chr12	52806076	52813430	prostate_normal.21368	0	+	52806076	52813430	0	2	587,1390	0,5964
chr12	52806080	52812912	melanoma_Garraway_short_term_cultures.24653	0	+	52806080	52812912	0	2	583,872	0,5960
chr12	52806085	52812869	T47D_Burge_Thompson.10550	0	+	52806085	52812869	0	2	578,829	0,5955
chr12	52806085	52806753	T47D_Burge_Thompson.10548	0	.	52806085	52806753	0	1	668	0
chr12	52806089	52806729	colon_Burge.14023	0	.	52806089	52806729	0	1	640	0
chr12	52806102	52812895	REMC_BreastStem.19140	0	+	52806102	52812895	0	3	561,65,855	0,5723,5938
chr12	52806110	52812967	B_Cells_Pritchard.1227035	0	+	52806110	52812967	0	2	574,927	0,5930
chr12	52806113	52806763	HepG2_Caltech_ENCODE.13184	0	.	52806113	52806763	0	1	650	0
chr12	52806121	52812893	NR_026656	0	+	52806121	52812893	0	2	542,853	0,5919
chr12	52806121	52812862	MCF10A_Thompson.8028	0	+	52806121	52812862	0	2	542,822	0,5919
chr12	52806124	52817398	testes_Burge.19308	0	+	52806124	52817398	0	3	539,476,66	0,5916,11208
chr12	52806131	52812894	adipose_Burge.14223	0	+	52806131	52812894	0	2	532,854	0,5909
chr12	52806132	52812804	MeI_Garraway.6525	0	+	52806132	52812804	0	2	531,764	0,5908
chr12	52806136	52806677	lymph_node_Burge.17988	0	.	52806136	52806677	0	1	541	0
chr12	52806143	52806733	brain_AmbionMAQC.16006	0	.	52806143	52806733	0	1	590	0
chr12	52806144	52806505	MB435_Burge.15727	0	.	52806144	52806505	0	1	361	0
chr12	52806148	52812894	ENST00000508564	0	+	52806148	52812894	0	2	515,854	0,5892
chr12	52806148	52812931	HIT000087268	0	+	52806148	52812931	0	2	515,891	0,5892
chr12	52806149	52806506	HME_Burge.15127	0	.	52806149	52806506	0	1	357	0
chr12	52806160	52807965	A549_Myers.28727	0	.	52806160	52807965	0	1	1805	0
chr12	52806164	52806665	breast_Burge.14959	0	.	52806164	52806665	0	1	501	0
chr12	52806988	52807769	T47D_Burge_Thompson.10551	0	.	52806988	52807769	0	1	781	0
chr12	52807377	52812895	REMC_MyoepithelialBreast.35868	0	.	52807377	52812895	0	1	5518	0
chr12	52808591	52810194	MIP101.25014	0	.	52808591	52810194	0	1	1603	0
chr12	52808601	52810043	BT474_Burge_Thompson.12097	0	.	52808601	52810043	0	1	1442	0
chr12	52808762	52810036	T47D_Burge_Thompson.10553	0	.	52808762	52810036	0	1	1274	0
chr12	52808795	52810128	ZR751_Thompson.8922	0	.	52808795	52810128	0	1	1333	0
chr12	52808975	52810186	MeWo_Garraway.12857	0	.	52808975	52810186	0	1	1211	0
chr12	52809488	52810072	A549_Myers.28729	0	.	52809488	52810072	0	1	584	0
chr12	52811667	52815701	prostate_carcinoma.36547	0	.	52811667	52815701	0	1	4034	0
chr12	52811674	52820626	prostate_carcinoma.36550	0	-	52811674	52820626	0	2	3362,585	0,8367
chr12	52811693	52812967	B_Cells_Pritchard.1227037	0	-	52811693	52812967	0	2	234,929	0,345
chr12	52811780	52812949	BT474_Burge_Thompson.12094	0	.	52811780	52812949	0	1	1169	0
chr12	52811867	52812912	melanoma_Garraway_short_term_cultures.24652	0	.	52811867	52812912	0	1	1045	0
chr12	52811884	52812890	colon_Burge.14031	0	-	52811884	52812890	0	2	43,852	0,154
chr12	52811884	52812869	T47D_Burge_Thompson.10549	0	.	52811884	52812869	0	1	985	0
chr12	52811978	52812614	A549_Myers.28731	0	.	52811978	52812614	0	1	636	0
chr12	52811980	52812880	lymph_node_Burge.17989	0	.	52811980	52812880	0	1	900	0
chr12	52811987	52812885	brain_AmbionMAQC.16007	0	.	52811987	52812885	0	1	898	0
chr12	52812018	52812869	breast_Burge.14961	0	.	52812018	52812869	0	1	851	0
chr12	52812033	52812889	HepG2_Caltech_ENCODE.13185	0	.	52812033	52812889	0	1	856	0
chr12	52812037	52812864	H1_polyA+.42297	0	.	52812037	52812864	0	1	827	0
chr12	52812253	52812808	HME_Burge.15128	0	.	52812253	52812808	0	1	555	0
chr12	52813018	52814190	MIP101.25017	0	.	52813018	52814190	0	1	1172	0
chr12	52813091	52814287	B_Cells_Pritchard.1227053	0	-	52813091	52814287	0	3	385,290,165	0,453,1031
chr12	52814741	52815297	MIP101.25020	0	.	52814741	52815297	0	1	556	0
chr12	52814829	52815142	B_cells_Cheung.71529	0	.	52814829	52815142	0	1	313	0
chr12	52814847	52815392	BT474_Burge_Thompson.12098	0	.	52814847	52815392	0	1	545	0
chr12	52819913	52828750	MIP101.25019	0	-	52819913	52828750	0	2	89,3032	0,5805
chr12	52821216	52822506	MIP101.25022	0	.	52821216	52822506	0	1	1290	0
chr12	52821536	52821926	prostate_carcinoma.36557	0	.	52821536	52821926	0	1	390	0
chr12	52821853	52822846	B_cells_Cheung.71535	0	.	52821853	52822846	0	1	993	0
chr12	52822699	52823601	MIP101.25023	0	.	52822699	52823601	0	1	902	0
chr12	52824785	52825188	B_Cells_Pritchard.1227085	0	.	52824785	52825188	0	1	403	0
chr12	52824792	52825224	MIP101.25025	0	.	52824792	52825224	0	1	432	0
chr12	52825066	52827276	HIT000092081	0	-	52825066	52827276	0	1	2210	0
chr12	52825365	52826201	B_Cells_Pritchard.1227087	0	.	52825365	52826201	0	1	836	0
chr12	52825569	52826503	B_cells_Cheung.71538	0	.	52825569	52826503	0	1	934	0
chr12	52825709	52826534	REMC_LuminalBreast.38126	0	.	52825709	52826534	0	1	825	0
chr12	52825819	52826187	REMC_BreastStem.19141	0	.	52825819	52826187	0	1	368	0
chr12	52826087	52826554	prostate_carcinoma.36563	0	.	52826087	52826554	0	1	467	0
chr12	52826220	52827490	T47D_Burge_Thompson.10557	0	.	52826220	52827490	0	1	1270	0
chr12	52826374	52826714	B_Cells_Pritchard.1227089	0	.	52826374	52826714	0	1	340	0
chr12	52826614	52827752	prostate_carcinoma.36564	0	.	52826614	52827752	0	1	1138	0
chr12	52826794	52827169	A549_Myers.28737	0	.	52826794	52827169	0	1	375	0
chr12	52826824	52827687	REMC_LuminalBreast.38127	0	.	52826824	52827687	0	1	863	0
chr12	52828440	52829128	prostate_carcinoma.36566	0	.	52828440	52829128	0	1	688	0
chr12	52828702	52829082	B_cells_Cheung.71540	0	.	52828702	52829082	0	1	380	0
chr12	52828730	52829055	A549_Myers.28738	0	.	52828730	52829055	0	1	325	0
chr12	52829167	52830157	B_cells_Cheung.71541	0	.	52829167	52830157	0	1	990	0
chr12	52830233	52833525	B_cells_Cheung.71542	0	.	52830233	52833525	0	1	3292	0
chr12	52830296	52833520	B_Cells_Pritchard.1227109	0	.	52830296	52833520	0	1	3224	0
chr12	52830312	52833506	MIP101.25028	0	.	52830312	52833506	0	1	3194	0
chr12	52830562	52832826	prostate_carcinoma.36548	0	.	52830562	52832826	0	1	2264	0
chr12	52830691	52832776	Rinn_00021139	0	+	52830691	52832776	0	2	233,79	0,2006
chr12	52831172	52832163	REMC_LuminalBreast.38128	0	.	52831172	52832163	0	1	991	0
chr12	52831210	52832403	melanoma_Garraway_short_term_cultures.24655	0	.	52831210	52832403	0	1	1193	0
chr12	52832173	52832730	A549_Myers.28742	0	.	52832173	52832730	0	1	557	0
chr12	52834380	52837734	prostate_carcinoma.36571	0	.	52834380	52837734	0	1	3354	0
chr12	52834415	52834777	BT474_Burge_Thompson.12117	0	.	52834415	52834777	0	1	362	0
chr12	52834580	52836698	B_Cells_Pritchard.1227115	0	.	52834580	52836698	0	1	2118	0
chr12	52834586	52836488	REMC_MyoepithelialBreast.35875	0	.	52834586	52836488	0	1	1902	0
chr12	52838040	52839617	B_cells_Cheung.71545	0	.	52838040	52839617	0	1	1577	0
chr12	52838040	52842836	B_cells_Cheung.71547	0	-	52838040	52842836	0	2	1425,2710	0,2086
chr12	52838044	52841335	MIP101.25031	0	.	52838044	52841335	0	1	3291	0
chr12	52838048	52839654	prostate_carcinoma.36562	0	.	52838048	52839654	0	1	1606	0
chr12	52838284	52840144	BT474_Burge_Thompson.12115	0	.	52838284	52840144	0	1	1860	0
chr12	52839376	52843352	B_Cells_Pritchard.1227123	0	.	52839376	52843352	0	1	3976	0
chr12	52839654	52840810	prostate_carcinoma.36572	0	.	52839654	52840810	0	1	1156	0
chr12	52839696	52842836	B_cells_Cheung.71546	0	.	52839696	52842836	0	1	3140	0
chr12	52840862	52843412	prostate_carcinoma.36556	0	.	52840862	52843412	0	1	2550	0
chr12	52841393	52842599	MIP101.25032	0	.	52841393	52842599	0	1	1206	0
chr12	52841885	52842487	BT474_Burge_Thompson.12120	0	.	52841885	52842487	0	1	602	0
chr12	52842971	52844267	REMC_LuminalBreast.38131	0	.	52842971	52844267	0	1	1296	0
chr12	52843729	52844610	T47D_Burge_Thompson.10561	0	.	52843729	52844610	0	1	881	0
chr12	52843986	52844792	BT474_Burge_Thompson.12121	0	.	52843986	52844792	0	1	806	0
chr12	52877698	52878095	BT474_Burge_Thompson.12104	0	.	52877698	52878095	0	1	397	0
chr12	52877844	52878151	B_Cells_Pritchard.1227301	0	+	52877844	52878151	0	1	307	0
chr12	52880105	52880672	ZR751_Thompson.8931	0	.	52880105	52880672	0	1	567	0
chr12	52881362	52881831	A549_Myers.28763	0	.	52881362	52881831	0	1	469	0
chr12	52884567	52909856	pHIT000021841	0	+	52884567	52909856	0	5	83,109,50,172,99	0,1325,5795,7015,25190
chr12	52885557	52909856	pHIT000021836	0	+	52885557	52909856	0	5	128,109,50,172,99	0,335,4805,6025,24200
chr12	52885557	52891754	pHIT000111771	0	+	52885557	52891754	0	4	128,109,50,172	0,335,4805,6025
chr12	52885557	52898688	pHIT000086199	0	+	52885557	52898688	0	5	128,109,50,172,72	0,335,4805,6025,13059
chr12	52891914	52892305	BT474_Burge_Thompson.12105	0	.	52891914	52892305	0	1	391	0
chr12	52895901	52896311	A549_Myers.28769	0	.	52895901	52896311	0	1	410	0
chr12	52897516	52898076	A549_Myers.28771	0	.	52897516	52898076	0	1	560	0
chr12	52908535	52909225	B_cells_Cheung.71570	0	.	52908535	52909225	0	1	690	0
chr12	53033445	53034658	REMC_BreastStem.19156	0	.	53033445	53034658	0	1	1213	0
chr12	53034972	53035319	IMR90_UCSD_REMC.18517	0	-	53034972	53035319	0	1	347	0
chr12	53037133	53039327	REMC_MyoepithelialBreast.35901	0	.	53037133	53039327	0	1	2194	0
chr12	53038245	53039171	CD4_Plagnol_resting.22400	0	.	53038245	53039171	0	1	926	0
chr12	53038250	53039183	H1_polyA+.42314	0	.	53038250	53039183	0	1	933	0
chr12	53038334	53039063	CD4_Plagnol_activated.23117	0	.	53038334	53039063	0	1	729	0
chr12	53038424	53039070	K562.16717	0	.	53038424	53039070	0	1	646	0
chr12	53038428	53039242	melanoma_Garraway_short_term_cultures.24683	0	.	53038428	53039242	0	1	814	0
chr12	53038477	53039066	H1_rRNA-depleted_UCSD_REMC.32710	0	.	53038477	53039066	0	1	589	0
chr12	53038567	53039151	prostate_carcinoma.36709	0	.	53038567	53039151	0	1	584	0
chr12	53038611	53039125	testes_Burge.19378	0	.	53038611	53039125	0	1	514	0
chr12	53072528	53073017	HeLa_polyA+_Chen.13523	0	.	53072528	53073017	0	1	489	0
chr12	53073079	53073648	HeLa_polyA+_Chen.13524	0	.	53073079	53073648	0	1	569	0
chr12	53112145	53112686	prostate_carcinoma.36719	0	.	53112145	53112686	0	1	541	0
chr12	53112205	53112726	B_Cells_Pritchard.1227641	0	.	53112205	53112726	0	1	521	0
chr12	53282173	53282529	A549_Myers.28824	0	.	53282173	53282529	0	1	356	0
chr12	53283961	53284288	A549_Myers.28825	0	.	53283961	53284288	0	1	327	0
chr12	53803421	53804133	K562.16754	0	.	53803421	53804133	0	1	712	0
chr12	53803425	53804145	HepG2_Caltech_ENCODE.13201	0	.	53803425	53804145	0	1	720	0
chr12	54326261	54326647	A549_Myers.28841	0	.	54326261	54326647	0	1	386	0
chr12	54326432	54327034	B_Cells_Pritchard.1229921	0	.	54326432	54327034	0	1	602	0
chr12	54334987	54335328	B_cells_Cheung.71658	0	.	54334987	54335328	0	1	341	0
chr12	54410203	54410907	heart_Burge.11036	0	.	54410203	54410907	0	1	704	0
chr12	54410257	54410798	HME_Burge.15200	0	.	54410257	54410798	0	1	541	0
chr12	54410283	54410747	IMR90_UCSD_REMC.18557	0	-	54410283	54410747	0	1	464	0
chr12	54410306	54410929	NEC_from_H9.27518	0	.	54410306	54410929	0	1	623	0
chr12	54410366	54410966	ovary_Raymond.99808	0	.	54410366	54410966	0	1	600	0
chr12	54410482	54411142	MeWo_Garraway.13062	0	.	54410482	54411142	0	1	660	0
chr12	54412672	54413570	melanoma_Garraway_short_term_cultures.24716	0	.	54412672	54413570	0	1	898	0
chr12	54412738	54413420	H1_polyA+.42436	0	.	54412738	54413420	0	1	682	0
chr12	54414642	54416232	REMC_LuminalBreast.38224	0	.	54414642	54416232	0	1	1590	0
chr12	54414708	54415299	H1_polyA+.42437	0	.	54414708	54415299	0	1	591	0
chr12	54415439	54415750	H1_polyA+.42438	0	.	54415439	54415750	0	1	311	0
chr12	54525352	54525953	MCF7_Burge_Thompson.11048	0	.	54525352	54525953	0	1	601	0
chr12	54528060	54531814	REMC_BreastStem.19199	0	.	54528060	54531814	0	1	3754	0
chr12	54528229	54531578	REMC_MyoepithelialBreast.35929	0	.	54528229	54531578	0	1	3349	0
chr12	54748044	54759661	A549_Myers.28915	0	-	54748044	54759661	0	2	46,583	0,11034
chr12	54806108	54806847	brain_AmbionMAQC.16843	0	.	54806108	54806847	0	1	739	0
chr12	54876816	54880229	REMC_LuminalBreast.38449	0	.	54876816	54880229	0	1	3413	0
chr12	54983922	54984834	B_cells_Cheung.71821	0	.	54983922	54984834	0	1	912	0
chr12	54983987	54986087	REMC_BreastStem.19399	0	.	54983987	54986087	0	1	2100	0
chr12	54984009	54987638	REMC_MyoepithelialBreast.36223	0	.	54984009	54987638	0	1	3629	0
chr12	54985032	54986242	HeLa_polyA+_Chen.13624	0	.	54985032	54986242	0	1	1210	0
chr12	54985046	54986419	HepG2_Caltech_ENCODE.18635	0	.	54985046	54986419	0	1	1373	0
chr12	54985067	54986408	CD4_Plagnol_activated.23526	0	.	54985067	54986408	0	1	1341	0
chr12	54985908	54986434	CD4_Plagnol_resting.22587	0	.	54985908	54986434	0	1	526	0
chr12	54986238	54987442	kidney_Gilad.32825	0	+	54986238	54987442	0	2	139,539	0,665
chr12	54986791	54987245	H9_polyA+.16775	0	.	54986791	54987245	0	1	454	0
chr12	55327650	55329597	REMC_MyoepithelialBreast.36249	0	.	55327650	55329597	0	1	1947	0
chr12	55328969	55329642	B_cells_Cheung.72221	0	.	55328969	55329642	0	1	673	0
chr12	55331623	55333612	B_cells_Cheung.72224	0	.	55331623	55333612	0	1	1989	0
chr12	55331661	55332912	REMC_MyoepithelialBreast.36250	0	.	55331661	55332912	0	1	1251	0
chr12	55332071	55333371	REMC_BreastStem.19279	0	.	55332071	55333371	0	1	1300	0
chr12	55332083	55332622	REMC_LuminalBreast.38274	0	.	55332083	55332622	0	1	539	0
chr12	55336894	55338047	REMC_MyoepithelialBreast.36252	0	.	55336894	55338047	0	1	1153	0
chr12	55340838	55342269	B_cells_Cheung.72233	0	.	55340838	55342269	0	1	1431	0
chr12	55340867	55341479	CD4_Plagnol_activated.23372	0	.	55340867	55341479	0	1	612	0
chr12	55369962	55372838	REMC_LuminalBreast.38297	0	.	55369962	55372838	0	1	2876	0
chr12	55374959	55377382	REMC_LuminalBreast.38288	0	.	55374959	55377382	0	1	2423	0
chr12	55374983	55377218	H1_polyA+.42466	0	.	55374983	55377218	0	1	2235	0
chr12	55375432	55376950	REMC_MyoepithelialBreast.36261	0	.	55375432	55376950	0	1	1518	0
chr12	55378649	55380254	REMC_LuminalBreast.38290	0	.	55378649	55380254	0	1	1605	0
chr12	55484698	55485432	A549_Myers.28987	0	.	55484698	55485432	0	1	734	0
chr12	55520954	55521349	A549_Myers.28990	0	.	55520954	55521349	0	1	395	0
chr12	55576119	55576596	prostate_carcinoma.36740	0	.	55576119	55576596	0	1	477	0
chr12	55576130	55576645	B_Cells_Pritchard.1231615	0	.	55576130	55576645	0	1	515	0
chr12	55576176	55576494	prostate_normal.21534	0	.	55576176	55576494	0	1	318	0
chr12	55655846	55656937	H1_polyA+.42500	0	.	55655846	55656937	0	1	1091	0
chr12	55665945	55667088	REMC_MyoepithelialBreast.36086	0	.	55665945	55667088	0	1	1143	0
chr12	56539041	56539543	ZR751_Thompson.9121	0	.	56539041	56539543	0	1	502	0
chr12	56545244	56545644	A549_Myers.29156	0	.	56545244	56545644	0	1	400	0
chr12	56549870	56576539	HIT000092832	0	-	56549870	56576539	0	4	561,92,125,2750	0,2175,3031,23919
chr12	56549884	56576534	Rinn_00020255	0	-	56549884	56576534	0	4	547,94,125,2746	0,2160,3017,23904
chr12	56549885	56576534	ENST00000499481	0	-	56549885	56576534	0	4	546,93,124,2745	0,2160,3017,23904
chr12	56569995	56570561	MCF7_Burge_Thompson.11195	0	.	56569995	56570561	0	1	566	0
chr12	56574021	56576709	REMC_LuminalBreast.38469	0	+	56574021	56576709	0	2	380,1008	0,1680
chr12	56574135	56576937	Rinn_00020446	0	+	56574135	56576937	0	2	266,1237	0,1565
chr12	56575576	56576737	prostate_carcinoma.36914	0	.	56575576	56576737	0	1	1161	0
chr12	56576361	56576752	A549_Myers.29159	0	.	56576361	56576752	0	1	391	0
chr12	56576361	56576767	B_cells_Cheung.72246	0	.	56576361	56576767	0	1	406	0
chr12	56577572	56577893	A549_Myers.29161	0	.	56577572	56577893	0	1	321	0
chr12	56611573	56616114	HIT000281217	0	+	56611573	56616114	0	3	214,84,226	0,3946,4315
chr12	56617356	56617901	B_cells_Cheung.72250	0	.	56617356	56617901	0	1	545	0
chr12	56645760	56647476	B_Cells_Pritchard.1233563	0	.	56645760	56647476	0	1	1716	0
chr12	57074729	57075035	B_Cells_Pritchard.1234475	0	.	57074729	57075035	0	1	306	0
chr12	57328204	57328543	liver_polyA+.50917	0	.	57328204	57328543	0	1	339	0
chr12	57354373	57354743	liver_polyA+.50931	0	.	57354373	57354743	0	1	370	0
chr12	57354373	57354740	kidney_Gilad.33356	0	.	57354373	57354740	0	1	367	0
chr12	57355896	57356288	liver_polyA+.50933	0	.	57355896	57356288	0	1	392	0
chr12	57365953	57366472	liver_polyA+.50941	0	.	57365953	57366472	0	1	519	0
chr12	57546791	57549142	prostate_carcinoma.36928	0	.	57546791	57549142	0	1	2351	0
chr12	57793940	57794264	A549_Myers.29189	0	.	57793940	57794264	0	1	324	0
chr12	57983335	57987971	H1_polyA+.42665	0	.	57983335	57987971	0	1	4636	0
chr12	57997570	57999162	H9_polyA+.16928	0	.	57997570	57999162	0	1	1592	0
chr12	58004932	58006127	H1_polyA+.42712	0	.	58004932	58006127	0	1	1195	0
chr12	58007722	58008254	H9_polyA+.16938	0	.	58007722	58008254	0	1	532	0
chr12	58007740	58008062	H1_rRNA-depleted_UCSD_REMC.33337	0	.	58007740	58008062	0	1	322	0
chr12	58123863	58124711	H1_polyA+.42679	0	.	58123863	58124711	0	1	848	0
chr12	58126942	58130588	H1_polyA+.42681	0	.	58126942	58130588	0	1	3646	0
chr12	58479365	58481115	REMC_MyoepithelialBreast.36336	0	.	58479365	58481115	0	1	1750	0
chr12	61115013	61116336	prostate_carcinoma.36978	0	.	61115013	61116336	0	1	1323	0
chr12	61115096	61115842	T47D_Burge_Thompson.10812	0	.	61115096	61115842	0	1	746	0
chr12	61115934	61116904	T47D_Burge_Thompson.10813	0	.	61115934	61116904	0	1	970	0
chr12	61115954	61116579	prostate_normal.21671	0	.	61115954	61116579	0	1	625	0
chr12	61115959	61116538	A549_Myers.29222	0	.	61115959	61116538	0	1	579	0
chr12	61286986	61288625	melanoma_Garraway_short_term_cultures.25123	0	.	61286986	61288625	0	1	1639	0
chr12	61287357	61288503	B_cells_Cheung.72497	0	.	61287357	61288503	0	1	1146	0
chr12	61287411	61296835	B_Cells_Pritchard.1242083	0	-	61287411	61296835	0	2	112,2085	0,7339
chr12	61287577	61288563	NEC_from_H9.28188	0	.	61287577	61288563	0	1	986	0
chr12	61287590	61288532	MIP101.25417	0	.	61287590	61288532	0	1	942	0
chr12	61287831	61288574	MeWo_Garraway.13204	0	.	61287831	61288574	0	1	743	0
chr12	61288775	61298352	REMC_BreastStem.19364	0	.	61288775	61298352	0	1	9577	0
chr12	61288776	61302289	H1_polyA+.42738	0	.	61288776	61302289	0	1	13513	0
chr12	61290485	61291572	MCF10A_Thompson.8233	0	.	61290485	61291572	0	1	1087	0
chr12	61290521	61291253	MeWo_Garraway.13207	0	.	61290521	61291253	0	1	732	0
chr12	61290613	61291152	H9_polyA+.16975	0	.	61290613	61291152	0	1	539	0
chr12	61290632	61291679	B_cells_Cheung.72499	0	.	61290632	61291679	0	1	1047	0
chr12	61291850	61296835	B_Cells_Pritchard.1242081	0	+	61291850	61296835	0	2	1901,2437	0,2548
chr12	61292675	61305262	MIP101.25422	0	-	61292675	61305262	0	3	204,533,201	0,3312,12386
chr12	61293433	61294355	MCF10A_Thompson.8235	0	.	61293433	61294355	0	1	922	0
chr12	61293667	61297006	melanoma_Garraway_short_term_cultures.25127	0	.	61293667	61297006	0	1	3339	0
chr12	61293818	61297262	B_cells_Cheung.72503	0	.	61293818	61297262	0	1	3444	0
chr12	61293861	61297524	MeWo_Garraway.13210	0	.	61293861	61297524	0	1	3663	0
chr12	61293870	61296959	HIT000007536	0	-	61293870	61296959	0	1	3089	0
chr12	61294016	61296986	HepG2_Caltech_ENCODE.13391	0	.	61294016	61296986	0	1	2970	0
chr12	61294417	61297070	K562.17083	0	.	61294417	61297070	0	1	2653	0
chr12	61294430	61296506	prostate_normal.21693	0	.	61294430	61296506	0	1	2076	0
chr12	61294432	61296836	MCF10A_Thompson.8236	0	.	61294432	61296836	0	1	2404	0
chr12	61294925	61296503	NEC_from_H9.28193	0	.	61294925	61296503	0	1	1578	0
chr12	61295091	61296410	H9_polyA+.16978	0	.	61295091	61296410	0	1	1319	0
chr12	61295301	61296777	CD4_Plagnol_resting.22913	0	.	61295301	61296777	0	1	1476	0
chr12	61295308	61296428	MCF7_Burge_Thompson.11200	0	.	61295308	61296428	0	1	1120	0
chr12	61295347	61296931	HeLa_polyA+_Chen.13794	0	.	61295347	61296931	0	1	1584	0
chr12	61295375	61296423	T47D_Burge_Thompson.10820	0	.	61295375	61296423	0	1	1048	0
chr12	61295753	61296896	CD4_Plagnol_activated.23644	0	.	61295753	61296896	0	1	1143	0
chr12	61295870	61296727	brain_AmbionMAQC.16302	0	.	61295870	61296727	0	1	857	0
chr12	61296063	61296377	kidney_Raymond.40711	0	.	61296063	61296377	0	1	314	0
chr12	61296114	61296454	liver_polyA+.51102	0	.	61296114	61296454	0	1	340	0
chr12	61302823	61303180	B_cells_Cheung.72510	0	.	61302823	61303180	0	1	357	0
chr12	61304958	61319675	REMC_LuminalBreast.38844	0	.	61304958	61319675	0	1	14717	0
chr12	61309445	61310908	REMC_MyoepithelialBreast.36358	0	.	61309445	61310908	0	1	1463	0
chr12	61309446	61311850	REMC_BreastStem.19370	0	.	61309446	61311850	0	1	2404	0
chr12	61309489	61310850	melanoma_Garraway_short_term_cultures.25130	0	.	61309489	61310850	0	1	1361	0
chr12	61309650	61312721	H1_polyA+.42716	0	.	61309650	61312721	0	1	3071	0
chr12	61312325	61312788	MeWo_Garraway.13223	0	.	61312325	61312788	0	1	463	0
chr12	61312325	61313141	MIP101.25427	0	.	61312325	61313141	0	1	816	0
chr12	61313015	61313536	MeWo_Garraway.13224	0	.	61313015	61313536	0	1	521	0
chr12	61697440	61698694	prostate_carcinoma.37076	0	.	61697440	61698694	0	1	1254	0
chr12	61699681	61704244	prostate_carcinoma.37078	0	.	61699681	61704244	0	1	4563	0
chr12	62501954	62502819	brain_AmbionMAQC.16321	0	.	62501954	62502819	0	1	865	0
chr12	62501955	62503997	B_cells_Cheung.72568	0	.	62501955	62503997	0	1	2042	0
chr12	62501974	62504564	REMC_LuminalBreast.38574	0	.	62501974	62504564	0	1	2590	0
chr12	62501982	62505218	REMC_MyoepithelialBreast.36388	0	.	62501982	62505218	0	1	3236	0
chr12	62502024	62503057	REMC_BreastStem.19388	0	.	62502024	62503057	0	1	1033	0
chr12	62502164	62503987	NEC_from_H9.28225	0	+	62502164	62503987	0	2	456,823	0,1000
chr12	62502211	62519231	CD4_Plagnol_resting.22934	0	-	62502211	62519231	0	2	1547,80	0,16940
chr12	62502214	62504158	melanoma_Garraway_short_term_cultures.25165	0	.	62502214	62504158	0	1	1944	0
chr12	62502665	62503947	pHIT000022234	0	+	62502665	62503947	0	2	178,404	0,878
chr12	62503108	62503990	brain_AmbionMAQC.16322	0	.	62503108	62503990	0	1	882	0
chr12	62503122	62503590	testes_Burge.19854	0	.	62503122	62503590	0	1	468	0
chr12	62503166	62503624	MCF7_Burge_Thompson.11212	0	.	62503166	62503624	0	1	458	0
chr12	62503168	62504048	REMC_BreastStem.19389	0	.	62503168	62504048	0	1	880	0
chr12	62503185	62503785	MeI_Garraway.6748	0	.	62503185	62503785	0	1	600	0
chr12	62835541	62843289	REMC_LuminalBreast.38731	0	.	62835541	62843289	0	1	7748	0
chr12	62835869	62846242	REMC_BreastStem.20768	0	.	62835869	62846242	0	1	10373	0
chr12	62837715	62838192	HeLa_polyA+_Chen.13812	0	.	62837715	62838192	0	1	477	0
chr12	62843409	62848572	REMC_LuminalBreast.38732	0	.	62843409	62848572	0	1	5163	0
chr12	62852489	62856073	REMC_LuminalBreast.38735	0	.	62852489	62856073	0	1	3584	0
chr12	62855959	62859801	REMC_BreastStem.20770	0	.	62855959	62859801	0	1	3842	0
chr12	62918791	62919929	REMC_MyoepithelialBreast.36953	0	.	62918791	62919929	0	1	1138	0
chr12	62925101	62927160	REMC_MyoepithelialBreast.36956	0	.	62925101	62927160	0	1	2059	0
chr12	62945002	62945634	prostate_normal.21755	0	.	62945002	62945634	0	1	632	0
chr12	63186858	63187535	B_Cells_Pritchard.1246271	0	.	63186858	63187535	0	1	677	0
chr12	63186972	63188222	REMC_LuminalBreast.38747	0	.	63186972	63188222	0	1	1250	0
chr12	63187193	63188357	REMC_MyoepithelialBreast.36437	0	.	63187193	63188357	0	1	1164	0
chr12	63190232	63191268	REMC_LuminalBreast.38749	0	.	63190232	63191268	0	1	1036	0
chr12	63190312	63191358	REMC_MyoepithelialBreast.36439	0	.	63190312	63191358	0	1	1046	0
chr12	63196625	63197951	REMC_MyoepithelialBreast.36443	0	.	63196625	63197951	0	1	1326	0
chr12	63196874	63199239	REMC_LuminalBreast.38754	0	.	63196874	63199239	0	1	2365	0
chr12	63197440	63197952	REMC_BreastStem.19455	0	.	63197440	63197952	0	1	512	0
chr12	63200704	63203344	REMC_BreastStem.19457	0	.	63200704	63203344	0	1	2640	0
chr12	63204358	63205612	REMC_MyoepithelialBreast.36446	0	.	63204358	63205612	0	1	1254	0
chr12	63204365	63206526	REMC_LuminalBreast.38756	0	.	63204365	63206526	0	1	2161	0
chr12	63223458	63226034	A549_Myers.29384	0	-	63223458	63226034	0	2	293,68	0,2508
chr12	63230035	63231135	REMC_MyoepithelialBreast.36449	0	.	63230035	63231135	0	1	1100	0
chr12	63237154	63238301	REMC_MyoepithelialBreast.36450	0	.	63237154	63238301	0	1	1147	0
chr12	63242193	63243233	REMC_LuminalBreast.38762	0	.	63242193	63243233	0	1	1040	0
chr12	63378992	63381334	B_cells_Cheung.72722	0	.	63378992	63381334	0	1	2342	0
chr12	63379723	63382723	REMC_MyoepithelialBreast.36454	0	.	63379723	63382723	0	1	3000	0
chr12	63380930	63381883	REMC_BreastStem.19469	0	.	63380930	63381883	0	1	953	0
chr12	63386108	63387580	REMC_MyoepithelialBreast.36457	0	.	63386108	63387580	0	1	1472	0
chr12	63386263	63387433	REMC_BreastStem.19470	0	.	63386263	63387433	0	1	1170	0
chr12	63390555	63392161	REMC_MyoepithelialBreast.36460	0	.	63390555	63392161	0	1	1606	0
chr12	63390639	63391901	REMC_LuminalBreast.38782	0	.	63390639	63391901	0	1	1262	0
chr12	63390856	63391875	H1_polyA+.42898	0	.	63390856	63391875	0	1	1019	0
chr12	63562404	63563557	H1_polyA+.42943	0	.	63562404	63563557	0	1	1153	0
chr12	63565959	63566803	prostate_carcinoma.37210	0	.	63565959	63566803	0	1	844	0
chr12	63566081	63567437	B_cells_Cheung.72763	0	.	63566081	63567437	0	1	1356	0
chr12	63566118	63566769	B_Cells_Pritchard.1247187	0	.	63566118	63566769	0	1	651	0
chr12	63569714	63570434	B_cells_Cheung.72767	0	.	63569714	63570434	0	1	720	0
chr12	63569921	63585991	pHIT000111920	0	+	63569921	63585991	0	3	96,122,184	0,10702,15886
chr12	63584985	63586202	REMC_LuminalBreast.38787	0	.	63584985	63586202	0	1	1217	0
chr12	63592487	63593112	prostate_carcinoma.37213	0	.	63592487	63593112	0	1	625	0
chr12	63592509	63593121	B_Cells_Pritchard.1247307	0	.	63592509	63593121	0	1	612	0
chr12	63592574	63593184	B_cells_Cheung.72780	0	.	63592574	63593184	0	1	610	0
chr12	63606260	63607173	H1_polyA+.42952	0	.	63606260	63607173	0	1	913	0
chr12	63622564	63627622	B_cells_Cheung.72759	0	.	63622564	63627622	0	1	5058	0
chr12	63625907	63627146	H1_polyA+.42947	0	.	63625907	63627146	0	1	1239	0
chr12	63628795	63629335	B_cells_Cheung.72800	0	.	63628795	63629335	0	1	540	0
chr12	63638561	63639819	H1_polyA+.42962	0	.	63638561	63639819	0	1	1258	0
chr12	63643832	63644950	H1_polyA+.42963	0	.	63643832	63644950	0	1	1118	0
chr12	63645286	63645770	B_cells_Cheung.72816	0	.	63645286	63645770	0	1	484	0
chr12	63645709	63646421	H1_polyA+.42964	0	.	63645709	63646421	0	1	712	0
chr12	63645909	63646472	B_cells_Cheung.72817	0	.	63645909	63646472	0	1	563	0
chr12	63647275	63651664	B_cells_Cheung.72819	0	.	63647275	63651664	0	1	4389	0
chr12	63665142	63667542	B_cells_Cheung.72827	0	.	63665142	63667542	0	1	2400	0
chr12	63668423	63668841	B_cells_Cheung.72828	0	.	63668423	63668841	0	1	418	0
chr12	63930645	63932453	REMC_MyoepithelialBreast.36486	0	.	63930645	63932453	0	1	1808	0
chr12	63938950	63942337	REMC_MyoepithelialBreast.36490	0	.	63938950	63942337	0	1	3387	0
chr12	64186431	64188172	REMC_MyoepithelialBreast.36512	0	.	64186431	64188172	0	1	1741	0
chr12	64188269	64189219	REMC_MyoepithelialBreast.36513	0	.	64188269	64189219	0	1	950	0
chr12	64226328	64227486	REMC_MyoepithelialBreast.36525	0	.	64226328	64227486	0	1	1158	0
chr12	64235749	64237486	melanoma_Garraway_short_term_cultures.25307	0	.	64235749	64237486	0	1	1737	0
chr12	64235749	64293453	melanoma_Garraway_short_term_cultures.25306	0	-	64235749	64293453	0	4	1055,907,58,228	0,2205,14288,57476
chr12	64235769	64238402	REMC_MyoepithelialBreast.36526	0	.	64235769	64238402	0	1	2633	0
chr12	64241110	64242047	melanoma_Garraway_short_term_cultures.25315	0	.	64241110	64242047	0	1	937	0
chr12	64275482	64275993	melanoma_Garraway_short_term_cultures.25319	0	.	64275482	64275993	0	1	511	0
chr12	64282865	64296997	Rinn_00020456	0	+	64282865	64296997	0	3	163,203,4260	0,3208,9872
chr12	64291973	64297078	melanoma_Garraway_short_term_cultures.25309	0	.	64291973	64297078	0	1	5105	0
chr12	64292735	64293350	MDAMB231_Thompson.8427	0	.	64292735	64293350	0	1	615	0
chr12	64297501	64297982	REMC_MyoepithelialBreast.36531	0	.	64297501	64297982	0	1	481	0
chr12	64319601	64320116	melanoma_Garraway_short_term_cultures.25331	0	.	64319601	64320116	0	1	515	0
chr12	64323453	64324437	REMC_MyoepithelialBreast.36536	0	.	64323453	64324437	0	1	984	0
chr12	64327266	64328511	REMC_MyoepithelialBreast.36539	0	.	64327266	64328511	0	1	1245	0
chr12	64327266	64328511	REMC_MyoepithelialBreast.36541	0	-	64327266	64328511	0	2	299,612	0,633
chr12	64409129	64409664	A549_Myers.29431	0	.	64409129	64409664	0	1	535	0
chr12	64420386	64421631	H1_polyA+.42979	0	.	64420386	64421631	0	1	1245	0
chr12	64436284	64437138	REMC_MyoepithelialBreast.36551	0	.	64436284	64437138	0	1	854	0
chr12	64678144	64678453	B_Cells_Pritchard.1250033	0	.	64678144	64678453	0	1	309	0
chr12	64708334	64709052	B_cells_Cheung.72960	0	.	64708334	64709052	0	1	718	0
chr12	64801509	64801920	HeLa_polyA+_Chen.13858	0	.	64801509	64801920	0	1	411	0
chr12	65487618	65490356	REMC_LuminalBreast.38904	0	.	65487618	65490356	0	1	2738	0
chr12	65510890	65514124	REMC_LuminalBreast.38909	0	.	65510890	65514124	0	1	3234	0
chr12	65525480	65529016	H1_polyA+.43109	0	.	65525480	65529016	0	1	3536	0
chr12	65527002	65529741	REMC_LuminalBreast.38912	0	.	65527002	65529741	0	1	2739	0
chr12	65541806	65544305	REMC_LuminalBreast.38918	0	.	65541806	65544305	0	1	2499	0
chr12	65560055	65569242	REMC_LuminalBreast.38952	0	.	65560055	65569242	0	1	9187	0
chr12	65563656	65564325	H1_polyA+.43125	0	.	65563656	65564325	0	1	669	0
chr12	65567769	65569042	H1_polyA+.43128	0	.	65567769	65569042	0	1	1273	0
chr12	65584955	65604902	REMC_LuminalBreast.38953	0	.	65584955	65604902	0	1	19947	0
chr12	65586404	65591480	H1_polyA+.43133	0	.	65586404	65591480	0	1	5076	0
chr12	65590910	65591735	REMC_MyoepithelialBreast.36754	0	.	65590910	65591735	0	1	825	0
chr12	65593433	65596612	H1_polyA+.43135	0	.	65593433	65596612	0	1	3179	0
chr12	65593603	65596944	REMC_MyoepithelialBreast.36756	0	.	65593603	65596944	0	1	3341	0
chr12	65618930	65666283	REMC_LuminalBreast.38955	0	.	65618930	65666283	0	1	47353	0
chr12	65618935	65626624	H1_polyA+.43144	0	.	65618935	65626624	0	1	7689	0
chr12	65621271	65626751	REMC_MyoepithelialBreast.36765	0	.	65621271	65626751	0	1	5480	0
chr12	65625897	65626338	H1_rRNA-depleted_UCSD_REMC.33651	0	.	65625897	65626338	0	1	441	0
chr12	65626996	65635494	REMC_MyoepithelialBreast.36766	0	.	65626996	65635494	0	1	8498	0
chr12	65630113	65635573	H1_polyA+.43146	0	.	65630113	65635573	0	1	5460	0
chr12	65649616	65654090	melanoma_Garraway_short_term_cultures.25431	0	.	65649616	65654090	0	1	4474	0
chr12	65656199	65657373	MIP101.25686	0	.	65656199	65657373	0	1	1174	0
chr12	65666918	65705272	REMC_LuminalBreast.38956	0	.	65666918	65705272	0	1	38354	0
chr12	65671274	65683661	REMC_MyoepithelialBreast.36770	0	.	65671274	65683661	0	1	12387	0
chr12	65673777	65686362	H1_polyA+.43154	0	.	65673777	65686362	0	1	12585	0
chr12	65695018	65700886	REMC_MyoepithelialBreast.36772	0	.	65695018	65700886	0	1	5868	0
chr12	65695463	65697893	H1_polyA+.43158	0	.	65695463	65697893	0	1	2430	0
chr12	65710173	65744845	REMC_LuminalBreast.38960	0	.	65710173	65744845	0	1	34672	0
chr12	65717531	65744837	REMC_MyoepithelialBreast.36825	0	.	65717531	65744837	0	1	27306	0
chr12	65717691	65722435	H1_polyA+.43168	0	.	65717691	65722435	0	1	4744	0
chr12	65727342	65729428	H1_polyA+.43171	0	.	65727342	65729428	0	1	2086	0
chr12	65747820	65748517	prostate_carcinoma.37332	0	.	65747820	65748517	0	1	697	0
chr12	65748889	65750137	A549_Myers.29485	0	.	65748889	65750137	0	1	1248	0
chr12	65749006	65749914	BT20_Thompson.8128	0	.	65749006	65749914	0	1	908	0
chr12	65749058	65749986	H1_polyA+.43178	0	.	65749058	65749986	0	1	928	0
chr12	65749080	65749974	MIP101.25690	0	.	65749080	65749974	0	1	894	0
chr12	65749086	65749854	prostate_normal.21872	0	.	65749086	65749854	0	1	768	0
chr12	65749090	65749527	T47D_Burge_Thompson.10890	0	.	65749090	65749527	0	1	437	0
chr12	65749090	65749922	BT474_Burge_Thompson.12483	0	.	65749090	65749922	0	1	832	0
chr12	65749091	65749894	H9_polyA+.17123	0	.	65749091	65749894	0	1	803	0
chr12	65749091	65749990	prostate_carcinoma.37333	0	.	65749091	65749990	0	1	899	0
chr12	65749116	65749679	ZR751_Thompson.9230	0	.	65749116	65749679	0	1	563	0
chr12	65749456	65749909	MCF7_Burge_Thompson.11310	0	.	65749456	65749909	0	1	453	0
chr12	65749466	65752487	REMC_MyoepithelialBreast.36827	0	.	65749466	65752487	0	1	3021	0
chr12	65749476	65752460	REMC_LuminalBreast.38957	0	.	65749476	65752460	0	1	2984	0
chr12	65753030	65753988	REMC_MyoepithelialBreast.36821	0	.	65753030	65753988	0	1	958	0
chr12	65946620	65947042	B_Cells_Pritchard.1252429	0	-	65946620	65947042	0	1	422	0
chr12	66002616	66003314	REMC_BreastStem.19521	0	.	66002616	66003314	0	1	698	0
chr12	66003722	66004454	melanoma_Garraway_short_term_cultures.25443	0	.	66003722	66004454	0	1	732	0
chr12	66006482	66008310	B_cells_Cheung.73124	0	.	66006482	66008310	0	1	1828	0
chr12	66006483	66008135	B_Cells_Pritchard.1256095	0	+	66006483	66008135	0	1	1652	0
chr12	66006485	66008176	REMC_MyoepithelialBreast.36828	0	.	66006485	66008176	0	1	1691	0
chr12	66006805	66008012	REMC_BreastStem.19524	0	.	66006805	66008012	0	1	1207	0
chr12	66007554	66008276	CD4_Plagnol_activated.23837	0	.	66007554	66008276	0	1	722	0
chr12	66014341	66020576	REMC_LuminalBreast.39069	0	.	66014341	66020576	0	1	6235	0
chr12	66021463	66024893	REMC_LuminalBreast.39070	0	.	66021463	66024893	0	1	3430	0
chr12	66030071	66032580	H1_polyA+.43199	0	.	66030071	66032580	0	1	2509	0
chr12	66031240	66032224	B_cells_Cheung.73133	0	.	66031240	66032224	0	1	984	0
chr12	66031326	66032738	REMC_LuminalBreast.38962	0	.	66031326	66032738	0	1	1412	0
chr12	66031329	66032691	MIP101.25728	0	.	66031329	66032691	0	1	1362	0
chr12	66031373	66032358	B_Cells_Pritchard.1252661	0	.	66031373	66032358	0	1	985	0
chr12	66040734	66042162	REMC_LuminalBreast.38964	0	.	66040734	66042162	0	1	1428	0
chr12	66058679	66060393	REMC_LuminalBreast.38970	0	.	66058679	66060393	0	1	1714	0
chr12	66061665	66065519	REMC_LuminalBreast.38971	0	.	66061665	66065519	0	1	3854	0
chr12	66069377	66071638	REMC_LuminalBreast.38973	0	.	66069377	66071638	0	1	2261	0
chr12	66078411	66080548	REMC_LuminalBreast.38976	0	.	66078411	66080548	0	1	2137	0
chr12	66078746	66079770	MIP101.25697	0	.	66078746	66079770	0	1	1024	0
chr12	66084595	66085785	REMC_LuminalBreast.38978	0	.	66084595	66085785	0	1	1190	0
chr12	66101502	66102025	B_Cells_Pritchard.1252903	0	.	66101502	66102025	0	1	523	0
chr12	66251082	66270007	Rinn_00020825	0	-	66251082	66270007	0	3	270,152,96	0,16119,18829
chr12	66345592	66349043	CD4_Plagnol_resting.23100	0	.	66345592	66349043	0	1	3451	0
chr12	66346490	66348497	melanoma_Garraway_short_term_cultures.25454	0	.	66346490	66348497	0	1	2007	0
chr12	66346588	66347965	ZR751_Thompson.9233	0	.	66346588	66347965	0	1	1377	0
chr12	66346707	66349123	CD4_Plagnol_activated.23838	0	.	66346707	66349123	0	1	2416	0
chr12	66346752	66349080	B_Cells_Pritchard.1253425	0	.	66346752	66349080	0	1	2328	0
chr12	66346773	66348987	H1_polyA+.43202	0	.	66346773	66348987	0	1	2214	0
chr12	66347025	66349082	REMC_LuminalBreast.38985	0	.	66347025	66349082	0	1	2057	0
chr12	66347027	66348452	prostate_carcinoma.37350	0	.	66347027	66348452	0	1	1425	0
chr12	66347222	66348500	prostate_normal.21880	0	.	66347222	66348500	0	1	1278	0
chr12	66347413	66347888	H9_polyA+.17129	0	.	66347413	66347888	0	1	475	0
chr12	66347758	66348710	BT474_Burge_Thompson.12493	0	.	66347758	66348710	0	1	952	0
chr12	66347761	66348126	MCF7_Burge_Thompson.11313	0	.	66347761	66348126	0	1	365	0
chr12	66349985	66350332	CD4_Plagnol_resting.23102	0	.	66349985	66350332	0	1	347	0
chr12	66351077	66352699	CD4_Plagnol_resting.23103	0	.	66351077	66352699	0	1	1622	0
chr12	66351088	66352770	B_cells_Cheung.73150	0	.	66351088	66352770	0	1	1682	0
chr12	66351134	66352457	CD4_Plagnol_activated.23840	0	.	66351134	66352457	0	1	1323	0
chr12	66351262	66353001	H1_polyA+.43204	0	.	66351262	66353001	0	1	1739	0
chr12	66351365	66352673	melanoma_Garraway_short_term_cultures.25456	0	.	66351365	66352673	0	1	1308	0
chr12	66351734	66352664	B_Cells_Pritchard.1253435	0	.	66351734	66352664	0	1	930	0
chr12	66352158	66352949	REMC_LuminalBreast.38987	0	.	66352158	66352949	0	1	791	0
chr12	66353177	66354023	REMC_LuminalBreast.38988	0	.	66353177	66354023	0	1	846	0
chr12	66354359	66355606	CD4_Plagnol_activated.23841	0	.	66354359	66355606	0	1	1247	0
chr12	66365732	66368774	REMC_MyoepithelialBreast.36847	0	.	66365732	66368774	0	1	3042	0
chr12	66520446	66520977	A549_Myers.29505	0	.	66520446	66520977	0	1	531	0
chr12	66718721	66719496	B_Cells_Pritchard.1254175	0	.	66718721	66719496	0	1	775	0
chr12	66731017	66731548	B_Cells_Pritchard.1254207	0	.	66731017	66731548	0	1	531	0
chr12	66731112	66731647	B_cells_Cheung.73190	0	.	66731112	66731647	0	1	535	0
chr12	66748865	66749925	B_Cells_Pritchard.1254269	0	.	66748865	66749925	0	1	1060	0
chr12	66788785	66789333	B_cells_Cheung.73207	0	.	66788785	66789333	0	1	548	0
chr12	66788893	66789293	CD4_Snyder.28773	0	.	66788893	66789293	0	1	400	0
chr12	66789348	66791511	B_Cells_Pritchard.1254445	0	+	66789348	66791511	0	1	2163	0
chr12	66789429	66791512	B_cells_Cheung.73208	0	.	66789429	66791512	0	1	2083	0
chr12	66799744	66800495	B_Cells_Pritchard.1254469	0	.	66799744	66800495	0	1	751	0
chr12	66822307	66823052	CD4_Snyder.28778	0	.	66822307	66823052	0	1	745	0
chr12	66830398	66830747	CD4_Snyder.28783	0	.	66830398	66830747	0	1	349	0
chr12	66831640	66832208	B_cells_Cheung.73218	0	.	66831640	66832208	0	1	568	0
chr12	66845730	66850339	B_Cells_Pritchard.1254601	0	.	66845730	66850339	0	1	4609	0
chr12	66848048	66850343	B_cells_Cheung.73236	0	.	66848048	66850343	0	1	2295	0
chr12	66849163	66849961	CD4_Snyder.28792	0	.	66849163	66849961	0	1	798	0
chr12	66857314	66858532	B_cells_Cheung.73240	0	.	66857314	66858532	0	1	1218	0
chr12	66860588	66862099	B_Cells_Pritchard.1254623	0	.	66860588	66862099	0	1	1511	0
chr12	66865228	66866683	B_Cells_Pritchard.1254633	0	.	66865228	66866683	0	1	1455	0
chr12	66865305	66866070	B_cells_Cheung.73245	0	.	66865305	66866070	0	1	765	0
chr12	66876076	66876443	B_cells_Cheung.73248	0	.	66876076	66876443	0	1	367	0
chr12	66953848	66954699	B_Cells_Pritchard.1254935	0	.	66953848	66954699	0	1	851	0
chr12	67012564	67015733	HIT000045806	0	+	67012564	67015733	0	1	3169	0
chr12	67043860	67044313	B_Cells_Pritchard.1255231	0	.	67043860	67044313	0	1	453	0
chr12	67064264	67065192	B_Cells_Pritchard.1255315	0	.	67064264	67065192	0	1	928	0
chr12	67064275	67065181	B_cells_Cheung.73308	0	.	67064275	67065181	0	1	906	0
chr12	67065561	67067331	B_Cells_Pritchard.1255319	0	.	67065561	67067331	0	1	1770	0
chr12	67065656	67067393	B_cells_Cheung.73309	0	.	67065656	67067393	0	1	1737	0
chr12	67074427	67076689	B_Cells_Pritchard.1255333	0	.	67074427	67076689	0	1	2262	0
chr12	67074619	67076688	B_cells_Cheung.73318	0	.	67074619	67076688	0	1	2069	0
chr12	67076939	67078159	B_cells_Cheung.73319	0	.	67076939	67078159	0	1	1220	0
chr12	67089651	67090587	B_cells_Cheung.73333	0	.	67089651	67090587	0	1	936	0
chr12	67089667	67090611	B_Cells_Pritchard.1255365	0	.	67089667	67090611	0	1	944	0
chr12	67104357	67106150	B_cells_Cheung.73307	0	.	67104357	67106150	0	1	1793	0
chr12	67104362	67107155	B_Cells_Pritchard.1255403	0	-	67104362	67107155	0	1	2793	0
chr12	67104424	67104925	liver_polyA+.51414	0	.	67104424	67104925	0	1	501	0
chr12	67104450	67105822	prostate_carcinoma.37364	0	.	67104450	67105822	0	1	1372	0
chr12	67106348	67107787	HIT000089281	0	-	67106348	67107787	0	1	1439	0
chr12	67110653	67131706	B_Cells_Pritchard.1255409	0	+	67110653	67131706	0	3	209,9385,500	0,802,20553
chr12	67116871	67122212	B_cells_Cheung.73362	0	.	67116871	67122212	0	1	5341	0
chr12	67153849	67154180	H1_polyA+.43214	0	.	67153849	67154180	0	1	331	0
chr12	67167519	67168080	B_cells_Cheung.73376	0	.	67167519	67168080	0	1	561	0
chr12	67167556	67168123	B_Cells_Pritchard.1255565	0	.	67167556	67168123	0	1	567	0
chr12	67167615	67168043	A549_Myers.29529	0	.	67167615	67168043	0	1	428	0
chr12	67342160	67349609	REMC_MyoepithelialBreast.36876	0	.	67342160	67349609	0	1	7449	0
chr12	67342160	67349608	REMC_BreastStem.19533	0	.	67342160	67349608	0	1	7448	0
chr12	67349768	67353037	REMC_LuminalBreast.39000	0	.	67349768	67353037	0	1	3269	0
chr12	67356339	67356901	B_cells_Cheung.73415	0	.	67356339	67356901	0	1	562	0
chr12	67356453	67357007	REMC_MyoepithelialBreast.36867	0	.	67356453	67357007	0	1	554	0
chr12	67356663	67356973	H1_polyA+.43340	0	.	67356663	67356973	0	1	310	0
chr12	67356671	67357188	REMC_LuminalBreast.39003	0	.	67356671	67357188	0	1	517	0
chr12	67449292	67452245	B_Cells_Pritchard.1264747	0	+	67449292	67452245	0	3	184,1434,923	0,436,2030
chr12	67449595	67451970	B_cells_Cheung.73440	0	.	67449595	67451970	0	1	2375	0
chr12	67449602	67451836	HeLa_polyA+_Chen.13915	0	.	67449602	67451836	0	1	2234	0
chr12	67449672	67452092	H1_polyA+.43317	0	.	67449672	67452092	0	1	2420	0
chr12	67450434	67451080	brain_AmbionMAQC.16454	0	.	67450434	67451080	0	1	646	0
chr12	67450675	67454577	REMC_MyoepithelialBreast.36889	0	.	67450675	67454577	0	1	3902	0
chr12	67451233	67456208	CD4_Plagnol_resting.23178	0	-	67451233	67456208	0	2	402,84	0,4891
chr12	67455905	67460229	H1_polyA+.43319	0	.	67455905	67460229	0	1	4324	0
chr12	67456411	67460566	B_cells_Cheung.73446	0	.	67456411	67460566	0	1	4155	0
chr12	67456434	67457900	melanoma_Garraway_short_term_cultures.25511	0	.	67456434	67457900	0	1	1466	0
chr12	67456679	67458092	B_Cells_Pritchard.1264789	0	+	67456679	67458092	0	2	1254,24	0,1389
chr12	67456729	67457883	liver_polyA+.51530	0	.	67456729	67457883	0	1	1154	0
chr12	67457329	67457893	MIP101.25775	0	.	67457329	67457893	0	1	564	0
chr12	67458000	67459798	REMC_MyoepithelialBreast.36892	0	.	67458000	67459798	0	1	1798	0
chr12	67458097	67458595	melanoma_Garraway_short_term_cultures.25512	0	.	67458097	67458595	0	1	498	0
chr12	67458695	67459197	brain_AmbionMAQC.16456	0	.	67458695	67459197	0	1	502	0
chr12	67460771	67466625	REMC_LuminalBreast.39120	0	.	67460771	67466625	0	1	5854	0
chr12	67460771	67466625	REMC_LuminalBreast.39121	0	+	67460771	67466625	0	2	1735,3001	0,2853
chr12	67463755	67466607	REMC_MyoepithelialBreast.36896	0	.	67463755	67466607	0	1	2852	0
chr12	67465273	67466598	HepG2_Caltech_ENCODE.13536	0	.	67465273	67466598	0	1	1325	0
chr12	67465366	67467976	H1_polyA+.43322	0	.	67465366	67467976	0	1	2610	0
chr12	67465387	67466648	B_cells_Cheung.73448	0	.	67465387	67466648	0	1	1261	0
chr12	67465483	67466270	melanoma_Garraway_short_term_cultures.25515	0	.	67465483	67466270	0	1	787	0
chr12	67465526	67466006	prostate_carcinoma.37412	0	.	67465526	67466006	0	1	480	0
chr12	67467045	67469836	B_cells_Cheung.73450	0	.	67467045	67469836	0	1	2791	0
chr12	67468124	67469631	REMC_LuminalBreast.39123	0	.	67468124	67469631	0	1	1507	0
chr12	67468163	67469876	HepG2_Caltech_ENCODE.13538	0	.	67468163	67469876	0	1	1713	0
chr12	67473430	67473818	B_Cells_Pritchard.1270449	0	+	67473430	67473818	0	2	140,164	0,224
chr12	67484812	67486136	B_cells_Cheung.73459	0	.	67484812	67486136	0	1	1324	0
chr12	67484822	67485713	H1_polyA+.43326	0	.	67484822	67485713	0	1	891	0
chr12	67485236	67486497	REMC_MyoepithelialBreast.36905	0	.	67485236	67486497	0	1	1261	0
chr12	67959029	67959808	MeWo_Garraway.13442	0	.	67959029	67959808	0	1	779	0
chr12	67964290	67965578	B_Cells_Pritchard.1257139	0	.	67964290	67965578	0	1	1288	0
chr12	67964442	67965537	XR_039028	0	+	67964442	67965537	0	2	81,1010	0,85
chr12	67964442	67965537	XR_015594	0	+	67964442	67965537	0	2	80,1015	0,80
chr12	67964583	67965477	REMC_LuminalBreast.39074	0	.	67964583	67965477	0	1	894	0
chr12	67964640	67965793	H1_polyA+.43366	0	.	67964640	67965793	0	1	1153	0
chr12	67964859	67965626	prostate_carcinoma.37450	0	.	67964859	67965626	0	1	767	0
chr12	67965038	67965729	B_cells_Cheung.73503	0	.	67965038	67965729	0	1	691	0
chr12	67971596	67972242	B_cells_Cheung.73509	0	.	67971596	67972242	0	1	646	0
chr12	67971665	67972024	CD4_Plagnol_resting.23210	0	.	67971665	67972024	0	1	359	0
chr12	67974278	67977302	REMC_LuminalBreast.39077	0	.	67974278	67977302	0	1	3024	0
chr12	67974722	67975711	REMC_MyoepithelialBreast.36963	0	.	67974722	67975711	0	1	989	0
chr12	67980510	67982463	REMC_LuminalBreast.39078	0	.	67980510	67982463	0	1	1953	0
chr12	68010962	68011431	B_Cells_Pritchard.1257255	0	.	68010962	68011431	0	1	469	0
chr12	68077601	68078412	B_cells_Cheung.73525	0	.	68077601	68078412	0	1	811	0
chr12	68087988	68092426	REMC_LuminalBreast.39097	0	.	68087988	68092426	0	1	4438	0
chr12	68088098	68088886	T47D_Burge_Thompson.10934	0	.	68088098	68088886	0	1	788	0
chr12	68088460	68088827	A549_Myers.29581	0	.	68088460	68088827	0	1	367	0
chr12	68091456	68092437	MIP101.25793	0	.	68091456	68092437	0	1	981	0
chr12	68091458	68092602	B_cells_Cheung.73536	0	.	68091458	68092602	0	1	1144	0
chr12	68091471	68092476	H1_polyA+.43374	0	.	68091471	68092476	0	1	1005	0
chr12	68091476	68092428	prostate_carcinoma.37465	0	.	68091476	68092428	0	1	952	0
chr12	68091491	68092334	REMC_MyoepithelialBreast.36969	0	.	68091491	68092334	0	1	843	0
chr12	68091590	68092422	melanoma_Garraway_short_term_cultures.25565	0	.	68091590	68092422	0	1	832	0
chr12	68092542	68096946	REMC_LuminalBreast.39098	0	.	68092542	68096946	0	1	4404	0
chr12	68092667	68093551	H1_polyA+.43375	0	.	68092667	68093551	0	1	884	0
chr12	68092685	68093366	B_cells_Cheung.73537	0	.	68092685	68093366	0	1	681	0
chr12	68092701	68099703	MIP101.25794	0	-	68092701	68099703	0	2	666,143	0,6859
chr12	68092701	68093636	MIP101.25795	0	.	68092701	68093636	0	1	935	0
chr12	68092715	68093355	prostate_carcinoma.37466	0	.	68092715	68093355	0	1	640	0
chr12	68092739	68093284	BT474_Burge_Thompson.12530	0	.	68092739	68093284	0	1	545	0
chr12	68092747	68093359	CD4_Plagnol_activated.23946	0	.	68092747	68093359	0	1	612	0
chr12	68092762	68093356	CD4_Plagnol_resting.23217	0	.	68092762	68093356	0	1	594	0
chr12	68093814	68096825	H1_polyA+.43376	0	.	68093814	68096825	0	1	3011	0
chr12	68094310	68096793	B_Cells_Pritchard.1257619	0	-	68094310	68096793	0	2	1085,1322	0,1161
chr12	68095458	68096786	melanoma_Garraway_short_term_cultures.25567	0	.	68095458	68096786	0	1	1328	0
chr12	68095459	68096941	B_cells_Cheung.73541	0	.	68095459	68096941	0	1	1482	0
chr12	68095466	68095968	HeLa_polyA+_Chen.13951	0	.	68095466	68095968	0	1	502	0
chr12	68095466	68096917	MIP101.25798	0	.	68095466	68096917	0	1	1451	0
chr12	68095488	68096845	prostate_carcinoma.37468	0	.	68095488	68096845	0	1	1357	0
chr12	68095576	68096271	CD4_Plagnol_activated.23947	0	.	68095576	68096271	0	1	695	0
chr12	68096310	68096777	REMC_MyoepithelialBreast.36971	0	.	68096310	68096777	0	1	467	0
chr12	68097115	68098960	REMC_LuminalBreast.39099	0	.	68097115	68098960	0	1	1845	0
chr12	68097332	68098865	MIP101.25799	0	.	68097332	68098865	0	1	1533	0
chr12	68105409	68106042	MCF7_Burge_Thompson.11347	0	.	68105409	68106042	0	1	633	0
chr12	68107259	68110490	B_cells_Cheung.73548	0	.	68107259	68110490	0	1	3231	0
chr12	68108247	68109580	H1_polyA+.43382	0	.	68108247	68109580	0	1	1333	0
chr12	68109224	68110256	REMC_LuminalBreast.39105	0	.	68109224	68110256	0	1	1032	0
chr12	68110421	68111432	H1_polyA+.43383	0	.	68110421	68111432	0	1	1011	0
chr12	68110470	68111712	REMC_LuminalBreast.39106	0	.	68110470	68111712	0	1	1242	0
chr12	68110579	68111354	B_Cells_Pritchard.1257643	0	.	68110579	68111354	0	1	775	0
chr12	68111042	68111779	B_cells_Cheung.73550	0	.	68111042	68111779	0	1	737	0
chr12	68114034	68115938	H1_polyA+.43384	0	.	68114034	68115938	0	1	1904	0
chr12	68114418	68115608	B_cells_Cheung.73555	0	.	68114418	68115608	0	1	1190	0
chr12	68114772	68115574	B_Cells_Pritchard.1257659	0	.	68114772	68115574	0	1	802	0
chr12	68123821	68124790	H1_polyA+.43386	0	.	68123821	68124790	0	1	969	0
chr12	68123848	68124783	B_cells_Cheung.73563	0	.	68123848	68124783	0	1	935	0
chr12	68126949	68128221	MIP101.25807	0	.	68126949	68128221	0	1	1272	0
chr12	68127318	68128560	REMC_LuminalBreast.39111	0	.	68127318	68128560	0	1	1242	0
chr12	68127384	68128505	prostate_carcinoma.37476	0	.	68127384	68128505	0	1	1121	0
chr12	68127515	68127856	B_cells_Cheung.73565	0	.	68127515	68127856	0	1	341	0
chr12	68127542	68128035	B_Cells_Pritchard.1257701	0	.	68127542	68128035	0	1	493	0
chr12	68303979	68323110	pHIT000022280	0	-	68303979	68323110	0	4	359,152,92,18	0,3359,17148,19113
chr12	68406079	68408225	REMC_LuminalBreast.39208	0	.	68406079	68408225	0	1	2146	0
chr12	68793837	68794237	H1_polyA+.43444	0	.	68793837	68794237	0	1	400	0
chr12	68884317	68885398	prostate_carcinoma.37526	0	.	68884317	68885398	0	1	1081	0
chr12	68900799	68906869	H1_polyA+.43455	0	.	68900799	68906869	0	1	6070	0
chr12	68901149	68902404	REMC_LuminalBreast.39384	0	.	68901149	68902404	0	1	1255	0
chr12	68901193	68902379	REMC_MyoepithelialBreast.37000	0	.	68901193	68902379	0	1	1186	0
chr12	68901751	68902422	B_Cells_Pritchard.1259929	0	.	68901751	68902422	0	1	671	0
chr12	68901766	68902426	B_cells_Cheung.73722	0	.	68901766	68902426	0	1	660	0
chr12	68903265	68903820	prostate_carcinoma.37531	0	.	68903265	68903820	0	1	555	0
chr12	68906684	68907039	B_Cells_Pritchard.1259945	0	.	68906684	68907039	0	1	355	0
chr12	68909411	68910432	B_cells_Cheung.73730	0	.	68909411	68910432	0	1	1021	0
chr12	68909436	68910824	B_Cells_Pritchard.1259955	0	+	68909436	68910824	0	1	1388	0
chr12	68909649	68913007	H1_polyA+.43457	0	.	68909649	68913007	0	1	3358	0
chr12	69790203	69792890	H1_polyA+.43555	0	.	69790203	69792890	0	1	2687	0
chr12	69792848	69793311	H1_rRNA-depleted_UCSD_REMC.33886	0	.	69792848	69793311	0	1	463	0
chr12	70408065	70409269	B_cells_Cheung.73920	0	.	70408065	70409269	0	1	1204	0
chr12	70408065	70408868	B_Cells_Pritchard.1262963	0	-	70408065	70408868	0	1	803	0
chr12	70411366	70412535	B_cells_Cheung.73923	0	.	70411366	70412535	0	1	1169	0
chr12	70411438	70413010	B_Cells_Pritchard.1262975	0	-	70411438	70413010	0	1	1572	0
chr12	70413141	70413717	B_cells_Cheung.73925	0	.	70413141	70413717	0	1	576	0
chr12	70414595	70415057	B_cells_Cheung.73926	0	.	70414595	70415057	0	1	462	0
chr12	70418113	70418540	B_cells_Cheung.73927	0	.	70418113	70418540	0	1	427	0
chr12	70470055	70470866	CD4_Snyder.29078	0	.	70470055	70470866	0	1	811	0
chr12	70474497	70487725	REMC_LuminalBreast.39347	0	.	70474497	70487725	0	1	13228	0
chr12	70474507	70480921	REMC_BreastStem.19628	0	.	70474507	70480921	0	1	6414	0
chr12	70474772	70480567	B_cells_Cheung.73935	0	.	70474772	70480567	0	1	5795	0
chr12	70478368	70480035	ZR751_Thompson.9297	0	.	70478368	70480035	0	1	1667	0
chr12	70478377	70480034	CD4_Plagnol_activated.24011	0	.	70478377	70480034	0	1	1657	0
chr12	70478813	70480259	MCF10A_Thompson.8381	0	.	70478813	70480259	0	1	1446	0
chr12	70479480	70480042	brain_AmbionMAQC.16565	0	.	70479480	70480042	0	1	562	0
chr12	70608465	70609478	REMC_MyoepithelialBreast.37114	0	.	70608465	70609478	0	1	1013	0
chr12	70609016	70609575	B_cells_Cheung.73958	0	.	70609016	70609575	0	1	559	0
chr12	70862215	70890388	pHIT000022300	0	-	70862215	70890388	0	4	86,126,84,91	0,353,2524,28082
chr12	70933541	70938287	HIT000307101	0	-	70933541	70938287	0	1	4746	0
chr12	70951438	70951772	breast_Burge.15558	0	.	70951438	70951772	0	1	334	0
chr12	71839234	71888364	HIT000429314	0	+	71839234	71888364	0	4	256,40,91,871	0,4006,47144,48259
chr12	72481246	72481824	K562.17388	0	.	72481246	72481824	0	1	578	0
chr12	72794932	72796345	K562.17418	0	.	72794932	72796345	0	1	1413	0
chr12	72813209	72972678	HIT000260221	0	-	72813209	72972678	0	7	54,49,95,80,69,87,317	0,17839,24627,60911,151862,152697,159152
chr12	72850578	72850930	MIP101.25970	0	.	72850578	72850930	0	1	352	0
chr12	72850626	72851877	pHIT000111976	0	+	72850626	72851877	0	3	196,422,312	0,443,939
chr12	72851037	72852502	K562.17403	0	.	72851037	72852502	0	1	1465	0
chr12	72851170	72851917	B_Cells_Pritchard.1267173	0	.	72851170	72851917	0	1	747	0
chr12	72851271	72851938	B_cells_Cheung.73962	0	.	72851271	72851938	0	1	667	0
chr12	72851422	72851885	melanoma_Garraway_short_term_cultures.25628	0	.	72851422	72851885	0	1	463	0
chr12	72851443	72851873	A549_Myers.29697	0	.	72851443	72851873	0	1	430	0
chr12	72851459	72851890	MCF7_Burge_Thompson.11388	0	.	72851459	72851890	0	1	431	0
chr12	72858935	72861139	K562.17408	0	.	72858935	72861139	0	1	2204	0
chr12	72879762	72880186	melanoma_Garraway_short_term_cultures.25629	0	.	72879762	72880186	0	1	424	0
chr12	72945526	72945846	K562.17449	0	.	72945526	72945846	0	1	320	0
chr12	72972133	72972991	HIT000264501	0	-	72972133	72972991	0	1	858	0
chr12	72972809	72974588	K562.17410	0	.	72972809	72974588	0	1	1779	0
chr12	72979241	72979900	H1_polyA+.43616	0	.	72979241	72979900	0	1	659	0
chr12	73033062	73045483	MIP101.25975	0	-	73033062	73045483	0	2	33,386	0,12035
chr12	73066061	73067178	H1_polyA+.43619	0	.	73066061	73067178	0	1	1117	0
chr12	73066248	73067178	melanoma_Garraway_short_term_cultures.25638	0	.	73066248	73067178	0	1	930	0
chr12	73067293	73069072	melanoma_Garraway_short_term_cultures.25639	0	.	73067293	73069072	0	1	1779	0
chr12	73132180	73133251	H1_polyA+.43628	0	.	73132180	73133251	0	1	1071	0
chr12	73167898	73169177	H1_polyA+.43639	0	.	73167898	73169177	0	1	1279	0
chr12	73238618	73243063	REMC_MyoepithelialBreast.37122	0	.	73238618	73243063	0	1	4445	0
chr12	73314966	73315408	B_Cells_Pritchard.1267803	0	.	73314966	73315408	0	1	442	0
chr12	73664438	73676240	prostate_carcinoma.37694	0	+	73664438	73676240	0	3	694,47,4379	0,3910,7423
chr12	73664458	73667519	prostate_carcinoma.37695	0	.	73664458	73667519	0	1	3061	0
chr12	73695852	73696388	prostate_carcinoma.37698	0	.	73695852	73696388	0	1	536	0
chr12	73699954	73700791	prostate_carcinoma.37703	0	.	73699954	73700791	0	1	837	0
chr12	73705199	73717780	prostate_carcinoma.37799	0	+	73705199	73717780	0	2	33,4255	0,8326
chr12	73712645	73713291	prostate_carcinoma.37802	0	.	73712645	73713291	0	1	646	0
chr12	74144127	74144848	REMC_BreastStem.19622	0	.	74144127	74144848	0	1	721	0
chr12	74202242	74212156	REMC_MyoepithelialBreast.37309	0	.	74202242	74212156	0	1	9914	0
chr12	74202242	74212868	REMC_MyoepithelialBreast.37308	0	-	74202242	74212868	0	2	9568,28	0,10598
chr12	74212371	74221213	REMC_MyoepithelialBreast.37310	0	.	74212371	74221213	0	1	8842	0
chr12	74235985	74236844	melanoma_Garraway_short_term_cultures.25673	0	.	74235985	74236844	0	1	859	0
chr12	74236149	74236925	REMC_MyoepithelialBreast.37311	0	.	74236149	74236925	0	1	776	0
chr12	74247028	74249314	melanoma_Garraway_short_term_cultures.25676	0	.	74247028	74249314	0	1	2286	0
chr12	74247064	74249220	MIP101.26043	0	.	74247064	74249220	0	1	2156	0
chr12	74247235	74249965	REMC_LuminalBreast.39907	0	.	74247235	74249965	0	1	2730	0
chr12	74250028	74254204	MDAMB468_Thompson.9609	0	.	74250028	74254204	0	1	4176	0
chr12	74250051	74255672	MIP101.26044	0	.	74250051	74255672	0	1	5621	0
chr12	74250059	74255664	melanoma_Garraway_short_term_cultures.25677	0	.	74250059	74255664	0	1	5605	0
chr12	74252268	74253723	T47D_Burge_Thompson.10980	0	.	74252268	74253723	0	1	1455	0
chr12	74254166	74255639	T47D_Burge_Thompson.10981	0	.	74254166	74255639	0	1	1473	0
chr12	74254955	74255644	BT20_Thompson.8188	0	.	74254955	74255644	0	1	689	0
chr12	74264575	74266537	REMC_LuminalBreast.39392	0	.	74264575	74266537	0	1	1962	0
chr12	74281243	74281679	A549_Myers.29716	0	.	74281243	74281679	0	1	436	0
chr12	74351099	74352754	REMC_LuminalBreast.39398	0	.	74351099	74352754	0	1	1655	0
chr12	74356129	74357981	REMC_LuminalBreast.39400	0	.	74356129	74357981	0	1	1852	0
chr12	74372543	74376009	REMC_LuminalBreast.39396	0	.	74372543	74376009	0	1	3466	0
chr12	74391357	74392043	melanoma_Garraway_short_term_cultures.25692	0	.	74391357	74392043	0	1	686	0
chr12	74400749	74401918	melanoma_Garraway_short_term_cultures.25696	0	.	74400749	74401918	0	1	1169	0
chr12	74400827	74401888	REMC_LuminalBreast.39413	0	.	74400827	74401888	0	1	1061	0
chr12	74448589	74450234	REMC_LuminalBreast.39430	0	.	74448589	74450234	0	1	1645	0
chr12	74449122	74449776	melanoma_Garraway_short_term_cultures.25703	0	.	74449122	74449776	0	1	654	0
chr12	74454032	74455801	REMC_LuminalBreast.39432	0	.	74454032	74455801	0	1	1769	0
chr12	74459079	74460378	REMC_LuminalBreast.39435	0	.	74459079	74460378	0	1	1299	0
chr12	74461804	74463319	REMC_LuminalBreast.39437	0	.	74461804	74463319	0	1	1515	0
chr12	74496275	74498940	REMC_LuminalBreast.39450	0	.	74496275	74498940	0	1	2665	0
chr12	74503709	74508017	REMC_LuminalBreast.39452	0	.	74503709	74508017	0	1	4308	0
chr12	74515413	74517492	REMC_LuminalBreast.39455	0	.	74515413	74517492	0	1	2079	0
chr12	74517638	74526526	REMC_LuminalBreast.39456	0	.	74517638	74526526	0	1	8888	0
chr12	74524338	74525819	REMC_MyoepithelialBreast.37179	0	.	74524338	74525819	0	1	1481	0
chr12	74553565	74558558	REMC_LuminalBreast.39468	0	.	74553565	74558558	0	1	4993	0
chr12	74555589	74556390	REMC_MyoepithelialBreast.37182	0	.	74555589	74556390	0	1	801	0
chr12	74561636	74571330	REMC_LuminalBreast.39470	0	.	74561636	74571330	0	1	9694	0
chr12	74574300	74578835	REMC_LuminalBreast.39473	0	.	74574300	74578835	0	1	4535	0
chr12	74596859	74606681	REMC_LuminalBreast.39481	0	.	74596859	74606681	0	1	9822	0
chr12	74606888	74607515	REMC_LuminalBreast.39482	0	.	74606888	74607515	0	1	627	0
chr12	74614823	74616202	REMC_LuminalBreast.39487	0	.	74614823	74616202	0	1	1379	0
chr12	74616930	74621072	REMC_LuminalBreast.39488	0	.	74616930	74621072	0	1	4142	0
chr12	74628157	74629248	REMC_LuminalBreast.39492	0	.	74628157	74629248	0	1	1091	0
chr12	74629554	74632320	REMC_LuminalBreast.39493	0	.	74629554	74632320	0	1	2766	0
chr12	74648343	74654073	REMC_LuminalBreast.39914	0	.	74648343	74654073	0	1	5730	0
chr12	74648868	74651314	REMC_MyoepithelialBreast.37193	0	.	74648868	74651314	0	1	2446	0
chr12	74655869	74660875	REMC_LuminalBreast.39916	0	.	74655869	74660875	0	1	5006	0
chr12	74657345	74659597	REMC_MyoepithelialBreast.37196	0	.	74657345	74659597	0	1	2252	0
chr12	74657399	74658715	REMC_BreastStem.19632	0	.	74657399	74658715	0	1	1316	0
chr12	74658108	74658594	A549_Myers.29722	0	.	74658108	74658594	0	1	486	0
chr12	74661041	74664214	REMC_LuminalBreast.39917	0	.	74661041	74664214	0	1	3173	0
chr12	74665576	74667930	REMC_LuminalBreast.39919	0	.	74665576	74667930	0	1	2354	0
chr12	74670803	74692129	pHIT000111983	0	-	74670803	74692129	0	5	148,109,59,85,211	0,12557,17320,20783,21115
chr12	74670803	74692890	pHIT000022308	0	-	74670803	74692890	0	6	148,109,59,85,211,147	0,12557,17320,20783,21115,21940
chr12	74673260	74678185	REMC_LuminalBreast.39922	0	.	74673260	74678185	0	1	4925	0
chr12	74678851	74680779	REMC_LuminalBreast.39925	0	.	74678851	74680779	0	1	1928	0
chr12	74679990	74680843	REMC_BreastStem.19811	0	.	74679990	74680843	0	1	853	0
chr12	74683953	74686225	REMC_LuminalBreast.39926	0	.	74683953	74686225	0	1	2272	0
chr12	74684142	74685209	H1_polyA+.43672	0	.	74684142	74685209	0	1	1067	0
chr12	74686396	74688668	REMC_LuminalBreast.39927	0	.	74686396	74688668	0	1	2272	0
chr12	74703127	74703496	A549_Myers.29724	0	.	74703127	74703496	0	1	369	0
chr12	75055559	75056375	K562.17466	0	.	75055559	75056375	0	1	816	0
chr12	75055570	75056369	H1_polyA+.43788	0	.	75055570	75056369	0	1	799	0
chr12	75055573	75056171	MIP101.26074	0	.	75055573	75056171	0	1	598	0
chr12	75055574	75056159	B_Cells_Pritchard.1270577	0	.	75055574	75056159	0	1	585	0
chr12	75055578	75056184	MDAMB468_Thompson.9573	0	.	75055578	75056184	0	1	606	0
chr12	75055583	75056163	A549_Myers.29736	0	.	75055583	75056163	0	1	580	0
chr12	75055716	75056157	HepG2_Caltech_ENCODE.13677	0	.	75055716	75056157	0	1	441	0
chr12	75055745	75056452	melanoma_Garraway_short_term_cultures.25742	0	.	75055745	75056452	0	1	707	0
chr12	75177641	75196564	REMC_MyoepithelialBreast.37201	0	+	75177641	75196564	0	3	255,204,2462	0,15149,16461
chr12	75177641	75180307	REMC_MyoepithelialBreast.37202	0	.	75177641	75180307	0	1	2666	0
chr12	75191764	75193730	REMC_MyoepithelialBreast.37203	0	.	75191764	75193730	0	1	1966	0
chr12	75194017	75196564	REMC_MyoepithelialBreast.37204	0	.	75194017	75196564	0	1	2547	0
chr12	75198948	75199308	REMC_MyoepithelialBreast.37211	0	.	75198948	75199308	0	1	360	0
chr12	75201463	75204575	REMC_MyoepithelialBreast.37213	0	.	75201463	75204575	0	1	3112	0
chr12	75205045	75207459	REMC_MyoepithelialBreast.37214	0	.	75205045	75207459	0	1	2414	0
chr12	75207563	75209681	REMC_MyoepithelialBreast.37215	0	.	75207563	75209681	0	1	2118	0
chr12	75210940	75212463	REMC_MyoepithelialBreast.37217	0	.	75210940	75212463	0	1	1523	0
chr12	75225581	75227220	REMC_MyoepithelialBreast.37223	0	.	75225581	75227220	0	1	1639	0
chr12	75482389	75484222	B_cells_Cheung.74121	0	.	75482389	75484222	0	1	1833	0
chr12	75482996	75484198	B_Cells_Pritchard.1271691	0	-	75482996	75484198	0	1	1202	0
chr12	75493855	75494231	B_Cells_Pritchard.1271733	0	.	75493855	75494231	0	1	376	0
chr12	75494770	75496056	REMC_MyoepithelialBreast.37243	0	.	75494770	75496056	0	1	1286	0
chr12	75494813	75496922	B_Cells_Pritchard.1271737	0	.	75494813	75496922	0	1	2109	0
chr12	75494872	75496308	B_cells_Cheung.74137	0	.	75494872	75496308	0	1	1436	0
chr12	75507462	75508813	H1_polyA+.43808	0	.	75507462	75508813	0	1	1351	0
chr12	75508444	75508903	REMC_LuminalBreast.39530	0	.	75508444	75508903	0	1	459	0
chr12	75545137	75545779	B_Cells_Pritchard.1271959	0	.	75545137	75545779	0	1	642	0
chr12	75566827	75567314	B_Cells_Pritchard.1271971	0	.	75566827	75567314	0	1	487	0
chr12	75610429	75612472	Rinn_00020848	0	-	75610429	75612472	0	2	852,123	0,1920
chr12	75674942	75675905	B_Cells_Pritchard.1272243	0	.	75674942	75675905	0	1	963	0
chr12	75675196	75675887	REMC_MyoepithelialBreast.37244	0	.	75675196	75675887	0	1	691	0
chr12	75675222	75675746	MeI_Garraway.6888	0	.	75675222	75675746	0	1	524	0
chr12	75675223	75675734	ZR751_Thompson.9336	0	.	75675223	75675734	0	1	511	0
chr12	75675226	75675753	MDAMB231_Thompson.8536	0	.	75675226	75675753	0	1	527	0
chr12	75837217	75838611	B_Cells_Pritchard.1272717	0	.	75837217	75838611	0	1	1394	0
chr12	75902091	75902598	H1_polyA+.43816	0	.	75902091	75902598	0	1	507	0
chr12	75902105	75902658	B_Cells_Pritchard.1272911	0	.	75902105	75902658	0	1	553	0
chr12	76005203	76005530	B_cells_Cheung.74256	0	.	76005203	76005530	0	1	327	0
chr12	76242556	76242889	A549_Myers.29782	0	.	76242556	76242889	0	1	333	0
chr12	76256687	76257095	H1_rRNA-depleted_UCSD_REMC.34138	0	.	76256687	76257095	0	1	408	0
chr12	76256752	76257081	ovary_Raymond.103780	0	.	76256752	76257081	0	1	329	0
chr12	76273017	76326319	pHIT000085284	0	+	76273017	76326319	0	5	67,80,57,149,28	0,19739,20726,22539,53274
chr12	76391235	76392059	melanoma_Garraway_short_term_cultures.25807	0	.	76391235	76392059	0	1	824	0
chr12	76588553	76589312	melanoma_Garraway_short_term_cultures.25820	0	.	76588553	76589312	0	1	759	0
chr12	76648302	76649180	REMC_MyoepithelialBreast.37281	0	.	76648302	76649180	0	1	878	0
chr12	76654013	76656677	melanoma_Garraway_short_term_cultures.25829	0	.	76654013	76656677	0	1	2664	0
chr12	76654871	76655577	B_Cells_Pritchard.1274699	0	.	76654871	76655577	0	1	706	0
chr12	76668255	76668607	B_cells_Cheung.74265	0	.	76668255	76668607	0	1	352	0
chr12	76705587	76707418	melanoma_Garraway_short_term_cultures.25839	0	.	76705587	76707418	0	1	1831	0
chr12	76705813	76706389	REMC_MyoepithelialBreast.37287	0	.	76705813	76706389	0	1	576	0
chr12	77504935	77505523	A549_Myers.29807	0	.	77504935	77505523	0	1	588	0
chr12	78371709	78372659	REMC_LuminalBreast.41054	0	.	78371709	78372659	0	1	950	0
chr12	78371809	78372662	prostate_carcinoma.37872	0	.	78371809	78372662	0	1	853	0
chr12	78381962	78389876	REMC_LuminalBreast.41057	0	.	78381962	78389876	0	1	7914	0
chr12	78390073	78404913	REMC_LuminalBreast.41058	0	.	78390073	78404913	0	1	14840	0
chr12	78405119	78408273	REMC_LuminalBreast.41059	0	.	78405119	78408273	0	1	3154	0
chr12	78406516	78407662	REMC_BreastStem.19742	0	.	78406516	78407662	0	1	1146	0
chr12	78406667	78408186	H1_polyA+.43863	0	.	78406667	78408186	0	1	1519	0
chr12	78407043	78407652	H9_polyA+.17316	0	.	78407043	78407652	0	1	609	0
chr12	78408162	78411968	REMC_BreastStem.19743	0	.	78408162	78411968	0	1	3806	0
chr12	78408352	78418223	REMC_LuminalBreast.41060	0	.	78408352	78418223	0	1	9871	0
chr12	78414545	78417785	REMC_BreastStem.19747	0	.	78414545	78417785	0	1	3240	0
chr12	78414696	78415150	H1_polyA+.43866	0	.	78414696	78415150	0	1	454	0
chr12	78414708	78415317	B_Cells_Pritchard.1277907	0	.	78414708	78415317	0	1	609	0
chr12	78418323	78428578	REMC_LuminalBreast.41061	0	.	78418323	78428578	0	1	10255	0
chr12	78418341	78424574	REMC_BreastStem.19749	0	.	78418341	78424574	0	1	6233	0
chr12	78418350	78418865	B_cells_Cheung.74284	0	.	78418350	78418865	0	1	515	0
chr12	78418446	78420150	H1_polyA+.43870	0	.	78418446	78420150	0	1	1704	0
chr12	78420228	78421813	H1_polyA+.43871	0	.	78420228	78421813	0	1	1585	0
chr12	78422707	78424044	H1_polyA+.43872	0	.	78422707	78424044	0	1	1337	0
chr12	78424147	78424462	H1_polyA+.43873	0	.	78424147	78424462	0	1	315	0
chr12	78425139	78428518	REMC_BreastStem.19751	0	.	78425139	78428518	0	1	3379	0
chr12	78427223	78428284	H1_polyA+.43875	0	.	78427223	78428284	0	1	1061	0
chr12	78429399	78431886	REMC_LuminalBreast.41062	0	.	78429399	78431886	0	1	2487	0
chr12	78429447	78431265	REMC_BreastStem.19752	0	.	78429447	78431265	0	1	1818	0
chr12	78429468	78430979	H1_polyA+.43876	0	.	78429468	78430979	0	1	1511	0
chr12	78429663	78430976	kidney_Gilad.34032	0	.	78429663	78430976	0	1	1313	0
chr12	78429663	78430976	liver_polyA+.52069	0	.	78429663	78430976	0	1	1313	0
chr12	78429736	78430974	B_cells_Cheung.74290	0	.	78429736	78430974	0	1	1238	0
chr12	78429782	78430978	B_Cells_Pritchard.1277977	0	.	78429782	78430978	0	1	1196	0
chr12	78432056	78438413	REMC_LuminalBreast.41063	0	.	78432056	78438413	0	1	6357	0
chr12	78432068	78433779	H1_polyA+.43877	0	.	78432068	78433779	0	1	1711	0
chr12	78432074	78434233	REMC_BreastStem.19754	0	.	78432074	78434233	0	1	2159	0
chr12	78432597	78433160	HeLa_polyA+_Chen.14068	0	.	78432597	78433160	0	1	563	0
chr12	78433285	78433708	liver_polyA+.52073	0	.	78433285	78433708	0	1	423	0
chr12	78434359	78434953	REMC_BreastStem.19755	0	.	78434359	78434953	0	1	594	0
chr12	78435024	78436673	H1_polyA+.43879	0	.	78435024	78436673	0	1	1649	0
chr12	78435033	78435823	REMC_BreastStem.19756	0	.	78435033	78435823	0	1	790	0
chr12	78439233	78441640	REMC_BreastStem.19758	0	.	78439233	78441640	0	1	2407	0
chr12	78439245	78440958	H1_polyA+.44226	0	.	78439245	78440958	0	1	1713	0
chr12	78447534	78457820	REMC_LuminalBreast.41065	0	.	78447534	78457820	0	2	3025,7025	0,3261
chr12	78456869	78457753	REMC_BreastStem.19769	0	.	78456869	78457753	0	1	884	0
chr12	78457096	78457769	prostate_carcinoma.37876	0	.	78457096	78457769	0	1	673	0
chr12	78457256	78457730	B_cells_Cheung.74297	0	.	78457256	78457730	0	1	474	0
chr12	78458667	78458969	REMC_MyoepithelialBreast.39516	0	.	78458667	78458969	0	1	302	0
chr12	78465229	78465678	H9_polyA+.17326	0	.	78465229	78465678	0	1	449	0
chr12	78479614	78479986	B_cells_Cheung.74310	0	.	78479614	78479986	0	1	372	0
chr12	78481221	78483247	B_cells_Cheung.74313	0	.	78481221	78483247	0	1	2026	0
chr12	78482494	78488681	REMC_BreastStem.19777	0	.	78482494	78488681	0	1	6187	0
chr12	78482576	78483232	MCF7_Burge_Thompson.11435	0	.	78482576	78483232	0	1	656	0
chr12	78489212	78493701	REMC_BreastStem.19778	0	.	78489212	78493701	0	1	4489	0
chr12	78489366	78491265	H1_polyA+.44239	0	.	78489366	78491265	0	1	1899	0
chr12	78489887	78490516	B_cells_Cheung.74320	0	.	78489887	78490516	0	1	629	0
chr12	78491745	78492293	B_cells_Cheung.74323	0	.	78491745	78492293	0	1	548	0
chr12	78491813	78493700	H1_polyA+.44241	0	.	78491813	78493700	0	1	1887	0
chr12	78491834	78492139	BT474_Burge_Thompson.12629	0	.	78491834	78492139	0	1	305	0
chr12	78492696	78493007	B_cells_Cheung.74324	0	.	78492696	78493007	0	1	311	0
chr12	78496321	78499491	REMC_BreastStem.19780	0	.	78496321	78499491	0	1	3170	0
chr12	78620791	78623174	REMC_LuminalBreast.39680	0	.	78620791	78623174	0	1	2383	0
chr12	78622695	78623225	REMC_MyoepithelialBreast.37302	0	.	78622695	78623225	0	1	530	0
chr12	78622708	78623201	H1_polyA+.44326	0	.	78622708	78623201	0	1	493	0
chr12	78622712	78623247	B_cells_Cheung.74361	0	.	78622712	78623247	0	1	535	0
chr12	78627985	78629218	REMC_LuminalBreast.39682	0	.	78627985	78629218	0	1	1233	0
chr12	78643103	78648092	REMC_LuminalBreast.39688	0	.	78643103	78648092	0	1	4989	0
chr12	78648363	78650251	REMC_LuminalBreast.39689	0	.	78648363	78650251	0	1	1888	0
chr12	78858119	78860370	REMC_LuminalBreast.39735	0	.	78858119	78860370	0	1	2251	0
chr12	78858235	78860502	B_cells_Cheung.74475	0	.	78858235	78860502	0	1	2267	0
chr12	78859115	78859781	REMC_MyoepithelialBreast.37316	0	.	78859115	78859781	0	1	666	0
chr12	79688688	79690271	H1_polyA+.43959	0	.	79688688	79690271	0	1	1583	0
chr12	79690398	79696101	H1_polyA+.43960	0	.	79690398	79696101	0	1	5703	0
chr12	79692745	79693309	B_Cells_Pritchard.1280919	0	.	79692745	79693309	0	1	564	0
chr12	79700184	79701589	HepG2_Caltech_ENCODE.13729	0	.	79700184	79701589	0	1	1405	0
chr12	79700338	79701579	H1_polyA+.43963	0	.	79700338	79701579	0	1	1241	0
chr12	79702340	79702864	H1_polyA+.43965	0	.	79702340	79702864	0	1	524	0
chr12	79703355	79703896	B_cells_Cheung.74511	0	.	79703355	79703896	0	1	541	0
chr12	81265005	81266845	REMC_MyoepithelialBreast.37329	0	.	81265005	81266845	0	1	1840	0
chr12	81470728	81471219	A549_Myers.29874	0	.	81470728	81471219	0	1	491	0
chr12	83009640	83010163	A549_Myers.29889	0	.	83009640	83010163	0	1	523	0
chr12	83774831	83775398	melanoma_Garraway_short_term_cultures.25943	0	.	83774831	83775398	0	1	567	0
chr12	83847659	83850054	H1_polyA+.44040	0	.	83847659	83850054	0	1	2395	0
chr12	83868095	83868859	H1_polyA+.44019	0	.	83868095	83868859	0	1	764	0
chr12	83904631	83911728	MeI_Garraway.6925	0	+	83904631	83911728	0	3	281,96,1249	0,2220,5848
chr12	83910839	83911596	melanoma_Garraway_short_term_cultures.25947	0	.	83910839	83911596	0	1	757	0
chr12	83922308	83925578	H1_polyA+.44020	0	.	83922308	83925578	0	1	3270	0
chr12	84278465	84280524	H1_polyA+.44045	0	.	84278465	84280524	0	1	2059	0
chr12	84386150	84386592	B_Cells_Pritchard.1289417	0	.	84386150	84386592	0	1	442	0
chr12	84493331	84493636	A549_Myers.29902	0	.	84493331	84493636	0	1	305	0
chr12	84623893	84624595	prostate_carcinoma.38063	0	.	84623893	84624595	0	1	702	0
chr12	84624660	84625961	prostate_carcinoma.38064	0	.	84624660	84625961	0	1	1301	0
chr12	85857192	85857721	H1_polyA+.44068	0	.	85857192	85857721	0	1	529	0
chr12	86709268	86710149	melanoma_Garraway_short_term_cultures.25968	0	.	86709268	86710149	0	1	881	0
chr12	87299397	87301338	B_Cells_Pritchard.1293613	0	.	87299397	87301338	0	1	1941	0
chr12	87300731	87301986	REMC_LuminalBreast.39909	0	.	87300731	87301986	0	1	1255	0
chr12	87300770	87301960	B_cells_Cheung.74867	0	.	87300770	87301960	0	1	1190	0
chr12	87406523	87409082	REMC_BreastStem.19895	0	.	87406523	87409082	0	1	2559	0
chr12	87407795	87408612	prostate_carcinoma.38092	0	.	87407795	87408612	0	1	817	0
chr12	87833096	87833554	B_Cells_Pritchard.1294569	0	.	87833096	87833554	0	1	458	0
chr12	87929033	87937600	ENST00000500381	0	-	87929033	87937600	0	3	2192,177,140	0,3566,8427
chr12	87929033	87937600	HIT000011676	0	+	87929033	87937600	0	3	2192,177,140	0,3566,8427
chr12	88048736	88049656	H1_polyA+.44092	0	.	88048736	88049656	0	1	920	0
chr12	88153198	88154679	REMC_LuminalBreast.39958	0	.	88153198	88154679	0	1	1481	0
chr12	88214600	88237416	pHIT000022338	0	+	88214600	88237416	0	2	389,250	0,22566
chr12	88272577	88273197	A549_Myers.29964	0	.	88272577	88273197	0	1	620	0
chr12	88279862	88284703	REMC_LuminalBreast.39969	0	.	88279862	88284703	0	1	4841	0
chr12	88280092	88288167	HepG2_Caltech_ENCODE.13788	0	.	88280092	88288167	0	1	8075	0
chr12	88280786	88283176	melanoma_Garraway_short_term_cultures.25997	0	.	88280786	88283176	0	1	2390	0
chr12	88281124	88284313	H1_polyA+.44100	0	.	88281124	88284313	0	1	3189	0
chr12	88281424	88282779	REMC_MyoepithelialBreast.37482	0	.	88281424	88282779	0	1	1355	0
chr12	88281447	88281757	H1_rRNA-depleted_UCSD_REMC.34545	0	.	88281447	88281757	0	1	310	0
chr12	88282393	88287733	prostate_carcinoma.38127	0	+	88282393	88287733	0	2	2640,262	0,5078
chr12	88286758	88310244	pHIT000112014	0	+	88286758	88310244	0	5	34,59,87,43,170	0,799,3949,7991,23316
chr12	88286758	88310244	pHIT000022341	0	+	88286758	88310244	0	6	34,59,87,43,69,170	0,799,3949,7991,10410,23316
chr12	88298773	88300874	REMC_LuminalBreast.39976	0	.	88298773	88300874	0	1	2101	0
chr12	88300636	88301857	REMC_MyoepithelialBreast.37489	0	.	88300636	88301857	0	1	1221	0
chr12	88303826	88306029	REMC_LuminalBreast.39978	0	.	88303826	88306029	0	1	2203	0
chr12	88317865	88318838	REMC_LuminalBreast.39986	0	.	88317865	88318838	0	1	973	0
chr12	88317910	88318713	REMC_MyoepithelialBreast.37493	0	.	88317910	88318713	0	1	803	0
chr12	88328615	88329483	REMC_LuminalBreast.39989	0	.	88328615	88329483	0	1	868	0
chr12	88329263	88331756	B_cells_Cheung.74937	0	.	88329263	88331756	0	1	2493	0
chr12	88447109	88449706	REMC_MyoepithelialBreast.37556	0	.	88447109	88449706	0	1	2597	0
chr12	88447215	88449568	HepG2_Caltech_ENCODE.13797	0	.	88447215	88449568	0	1	2353	0
chr12	88447225	88449038	K562.17543	0	.	88447225	88449038	0	1	1813	0
chr12	88447251	88449579	MIP101.26279	0	.	88447251	88449579	0	1	2328	0
chr12	88449731	88453440	B_Cells_Pritchard.1295723	0	-	88449731	88453440	0	2	709,2753	0,956
chr12	88449759	88451001	HepG2_Caltech_ENCODE.13798	0	.	88449759	88451001	0	1	1242	0
chr12	88452096	88453643	REMC_LuminalBreast.40109	0	.	88452096	88453643	0	1	1547	0
chr12	88452672	88453346	prostate_normal.22277	0	.	88452672	88453346	0	1	674	0
chr12	88457931	88459361	prostate_normal.22279	0	.	88457931	88459361	0	1	1430	0
chr12	88458057	88461074	H1_polyA+.44116	0	.	88458057	88461074	0	1	3017	0
chr12	88458336	88459615	K562.17530	0	.	88458336	88459615	0	1	1279	0
chr12	88458652	88459071	brain_AmbionMAQC.16739	0	.	88458652	88459071	0	1	419	0
chr12	88459718	88461210	T47D_Burge_Thompson.11106	0	.	88459718	88461210	0	1	1492	0
chr12	88459720	88461224	prostate_normal.22280	0	.	88459720	88461224	0	1	1504	0
chr12	88459721	88461881	REMC_BreastStem.19990	0	.	88459721	88461881	0	1	2160	0
chr12	88459745	88461088	BT474_Burge_Thompson.12695	0	.	88459745	88461088	0	1	1343	0
chr12	88463377	88464440	MCF7_Burge_Thompson.11486	0	.	88463377	88464440	0	1	1063	0
chr12	88463550	88464540	K562.17533	0	.	88463550	88464540	0	1	990	0
chr12	88463694	88464402	prostate_normal.22282	0	.	88463694	88464402	0	1	708	0
chr12	88465054	88467685	REMC_LuminalBreast.40111	0	.	88465054	88467685	0	1	2631	0
chr12	88465667	88467035	B_Cells_Pritchard.1295737	0	.	88465667	88467035	0	1	1368	0
chr12	88465993	88467380	B_cells_Cheung.74986	0	.	88465993	88467380	0	1	1387	0
chr12	88466119	88467488	prostate_carcinoma.38117	0	.	88466119	88467488	0	1	1369	0
chr12	88466198	88467037	CD4_Plagnol_activated.24191	0	.	88466198	88467037	0	1	839	0
chr12	88466323	88466882	CD4_Plagnol_resting.23491	0	.	88466323	88466882	0	1	559	0
chr12	88466473	88466885	ovary_Raymond.105826	0	.	88466473	88466885	0	1	412	0
chr12	88474894	88475862	prostate_carcinoma.38142	0	.	88474894	88475862	0	1	968	0
chr12	88481215	88482881	REMC_BreastStem.19998	0	.	88481215	88482881	0	1	1666	0
chr12	88626862	88629860	NR_028138	0	+	88626862	88629860	0	1	2998	0
chr12	88626866	88629627	HIT000096128	0	+	88626866	88629627	0	1	2761	0
chr12	88627010	88628246	CD4_Snyder.29544	0	.	88627010	88628246	0	1	1236	0
chr12	88627021	88627332	liver_polyA+.52418	0	.	88627021	88627332	0	1	311	0
chr12	88627413	88629720	REMC_LuminalBreast.40160	0	.	88627413	88629720	0	1	2307	0
chr12	88627482	88627983	lymph_node_Burge.19011	0	.	88627482	88627983	0	1	501	0
chr12	88627649	88629167	BT20_Thompson.8255	0	.	88627649	88629167	0	1	1518	0
chr12	88627649	88629848	H1_polyA+.44142	0	.	88627649	88629848	0	1	2199	0
chr12	88627652	88627971	liver_polyA+.52419	0	.	88627652	88627971	0	1	319	0
chr12	88627670	88629521	REMC_BreastStem.19897	0	.	88627670	88629521	0	1	1851	0
chr12	88627731	88628122	HeLa_polyA+_Chen.14152	0	.	88627731	88628122	0	1	391	0
chr12	88644987	88646834	REMC_LuminalBreast.39992	0	.	88644987	88646834	0	1	1847	0
chr12	88671164	88671593	K562.17547	0	.	88671164	88671593	0	1	429	0
chr12	88671165	88671806	B_cells_Cheung.74998	0	.	88671165	88671806	0	1	641	0
chr12	88671165	88671528	pHIT000112024	0	+	88671165	88671528	0	1	363	0
chr12	88671165	88671571	HepG2_Caltech_ENCODE.13803	0	.	88671165	88671571	0	1	406	0
chr12	88671165	88671570	H1_polyA+.44143	0	.	88671165	88671570	0	1	405	0
chr12	88671192	88671566	melanoma_Garraway_short_term_cultures.26022	0	.	88671192	88671566	0	1	374	0
chr12	88671197	88671562	CD4_Plagnol_activated.24218	0	.	88671197	88671562	0	1	365	0
chr12	88671200	88671554	MeWo_Garraway.13630	0	.	88671200	88671554	0	1	354	0
chr12	88671200	88671572	MIP101.26295	0	.	88671200	88671572	0	1	372	0
chr12	88671207	88671558	CD4_Plagnol_resting.23492	0	.	88671207	88671558	0	1	351	0
chr12	88671212	88671570	MCF7_Burge_Thompson.11488	0	.	88671212	88671570	0	1	358	0
chr12	88747007	88747909	B_Cells_Pritchard.1296437	0	.	88747007	88747909	0	1	902	0
chr12	88850725	88853494	B_cells_Cheung.75042	0	.	88850725	88853494	0	1	2769	0
chr12	88851871	88859967	B_Cells_Pritchard.1296729	0	.	88851871	88859967	0	1	8096	0
chr12	88852029	88852621	REMC_LuminalBreast.39999	0	.	88852029	88852621	0	1	592	0
chr12	88859457	88860079	REMC_LuminalBreast.40000	0	.	88859457	88860079	0	1	622	0
chr12	88865036	88870323	B_cells_Cheung.75057	0	.	88865036	88870323	0	1	5287	0
chr12	88867732	88868616	B_Cells_Pritchard.1296749	0	.	88867732	88868616	0	1	884	0
chr12	89007193	89008505	REMC_MyoepithelialBreast.37504	0	.	89007193	89008505	0	1	1312	0
chr12	89023343	89030270	B_Cells_Pritchard.1297191	0	-	89023343	89030270	0	3	57,998,313	0,4020,6614
chr12	89025606	89030689	BT474_Burge_Thompson.12712	0	.	89025606	89030689	0	1	5083	0
chr12	89027373	89027901	B_cells_Cheung.75054	0	.	89027373	89027901	0	1	528	0
chr12	89039302	89039779	B_Cells_Pritchard.1297249	0	.	89039302	89039779	0	1	477	0
chr12	89039565	89039917	A549_Myers.30005	0	.	89039565	89039917	0	1	352	0
chr12	89039975	89040540	A549_Myers.30006	0	.	89039975	89040540	0	1	565	0
chr12	89070210	89072059	B_Cells_Pritchard.1297365	0	.	89070210	89072059	0	1	1849	0
chr12	89593194	89602327	Rinn_00020514	0	+	89593194	89602327	0	3	122,65,4786	0,1261,4347
chr12	90270976	90295878	K562.17561	0	-	90270976	90295878	0	4	167,555,63,8098	0,12271,13919,16804
chr12	90309719	90315678	K562.17574	0	.	90309719	90315678	0	1	5959	0
chr12	90355893	90358255	K562.17582	0	.	90355893	90358255	0	1	2362	0
chr12	90463355	90463844	A549_Myers.30012	0	.	90463355	90463844	0	1	489	0
chr12	90549544	90552317	MCF7_Burge_Thompson.11494	0	.	90549544	90552317	0	1	2773	0
chr12	90599419	90599956	K562.17742	0	.	90599419	90599956	0	1	537	0
chr12	90606403	90607132	K562.17743	0	.	90606403	90607132	0	1	729	0
chr12	90617609	90618159	K562.17751	0	.	90617609	90618159	0	1	550	0
chr12	90645851	90646515	K562.17761	0	.	90645851	90646515	0	1	664	0
chr12	90658356	90658771	K562.17766	0	.	90658356	90658771	0	1	415	0
chr12	90724552	90725907	K562.17792	0	.	90724552	90725907	0	1	1355	0
chr12	90731392	90732051	K562.17795	0	.	90731392	90732051	0	1	659	0
chr12	90751625	90752118	K562.17802	0	.	90751625	90752118	0	1	493	0
chr12	90752366	90753097	K562.17803	0	.	90752366	90753097	0	1	731	0
chr12	90770680	90771565	K562.17808	0	.	90770680	90771565	0	1	885	0
chr12	90794175	90795193	CD4_Snyder.29593	0	.	90794175	90795193	0	1	1018	0
chr12	90823679	90824106	K562.17641	0	.	90823679	90824106	0	1	427	0
chr12	90834290	90835145	B_Cells_Pritchard.1300639	0	.	90834290	90835145	0	1	855	0
chr12	90888702	90890480	REMC_LuminalBreast.40006	0	.	90888702	90890480	0	1	1778	0
chr12	90898103	90901694	REMC_LuminalBreast.40013	0	-	90898103	90901694	0	2	2144,699	0,2892
chr12	90898103	90901694	REMC_LuminalBreast.40014	0	.	90898103	90901694	0	1	3591	0
chr12	90899366	90899974	B_cells_Cheung.75085	0	.	90899366	90899974	0	1	608	0
chr12	90903008	90905203	CD4_Plagnol_activated.24243	0	.	90903008	90905203	0	1	2195	0
chr12	90903027	90905173	CD4_Plagnol_resting.23540	0	.	90903027	90905173	0	1	2146	0
chr12	90903610	90905091	prostate_carcinoma.38172	0	.	90903610	90905091	0	1	1481	0
chr12	90913879	90917170	REMC_MyoepithelialBreast.37510	0	.	90913879	90917170	0	1	3291	0
chr12	90949550	90989678	REMC_MyoepithelialBreast.37516	0	.	90949550	90989678	0	1	40128	0
chr12	90951234	90952731	CD4_Plagnol_activated.24249	0	.	90951234	90952731	0	1	1497	0
chr12	90951778	90952456	CD4_Plagnol_resting.23545	0	.	90951778	90952456	0	1	678	0
chr12	90952449	90955459	REMC_BreastStem.19932	0	.	90952449	90955459	0	1	3010	0
chr12	90955527	90971821	REMC_BreastStem.19933	0	.	90955527	90971821	0	1	16294	0
chr12	90959517	90963514	B_Cells_Pritchard.1301037	0	.	90959517	90963514	0	1	3997	0
chr12	90959601	90961717	melanoma_Garraway_short_term_cultures.26034	0	.	90959601	90961717	0	1	2116	0
chr12	90974605	90975520	REMC_BreastStem.19936	0	.	90974605	90975520	0	1	915	0
chr12	90978010	90978626	CD4_Snyder.29617	0	.	90978010	90978626	0	1	616	0
chr12	90992008	90992796	B_cells_Cheung.75089	0	.	90992008	90992796	0	1	788	0
chr12	91000913	91004808	CD4_Snyder.29637	0	.	91000913	91004808	0	1	3895	0
chr12	91001329	91004762	B_cells_Cheung.75100	0	.	91001329	91004762	0	1	3433	0
chr12	91001922	91003988	B_Cells_Pritchard.1301167	0	.	91001922	91003988	0	1	2066	0
chr12	91001959	91004045	CD4_Plagnol_resting.23553	0	.	91001959	91004045	0	1	2086	0
chr12	91002572	91004045	CD4_Plagnol_activated.24258	0	.	91002572	91004045	0	1	1473	0
chr12	91002759	91004167	melanoma_Garraway_short_term_cultures.26046	0	.	91002759	91004167	0	1	1408	0
chr12	91006356	91011152	CD4_Snyder.29639	0	.	91006356	91011152	0	1	4796	0
chr12	91007903	91013623	B_cells_Cheung.75105	0	.	91007903	91013623	0	1	5720	0
chr12	91019393	91020872	melanoma_Garraway_short_term_cultures.26057	0	.	91019393	91020872	0	1	1479	0
chr12	91019396	91020332	H1_polyA+.44159	0	.	91019396	91020332	0	1	936	0
chr12	91019397	91020850	CD4_Snyder.29641	0	.	91019397	91020850	0	1	1453	0
chr12	91019429	91020385	CD4_Plagnol_activated.24270	0	.	91019429	91020385	0	1	956	0
chr12	91019435	91020465	B_cells_Cheung.75108	0	.	91019435	91020465	0	1	1030	0
chr12	91019457	91020365	CD4_Plagnol_resting.23561	0	.	91019457	91020365	0	1	908	0
chr12	91021886	91030640	B_cells_Cheung.75111	0	.	91021886	91030640	0	1	8754	0
chr12	91023169	91026574	melanoma_Garraway_short_term_cultures.26059	0	.	91023169	91026574	0	1	3405	0
chr12	91023173	91027748	CD4_Snyder.29649	0	.	91023173	91027748	0	1	4575	0
chr12	91023193	91024810	H1_polyA+.44161	0	.	91023193	91024810	0	1	1617	0
chr12	91023640	91027326	CD4_Plagnol_activated.24275	0	.	91023640	91027326	0	1	3686	0
chr12	91023646	91024576	CD4_Plagnol_resting.23564	0	.	91023646	91024576	0	1	930	0
chr12	91024589	91038046	B_Cells_Pritchard.1301225	0	-	91024589	91038046	0	2	260,1318	0,12139
chr12	91024910	91027148	CD4_Plagnol_resting.23572	0	.	91024910	91027148	0	1	2238	0
chr12	91035335	91044136	CD4_Snyder.29655	0	.	91035335	91044136	0	1	8801	0
chr12	91036484	91037888	CD4_Plagnol_activated.24790	0	.	91036484	91037888	0	1	1404	0
chr12	91036539	91038011	B_cells_Cheung.75117	0	.	91036539	91038011	0	1	1472	0
chr12	91036711	91037902	H1_polyA+.44170	0	.	91036711	91037902	0	1	1191	0
chr12	91036738	91038480	melanoma_Garraway_short_term_cultures.26065	0	.	91036738	91038480	0	1	1742	0
chr12	91036776	91037921	CD4_Plagnol_resting.23569	0	.	91036776	91037921	0	1	1145	0
chr12	91063991	91085520	HIT000097921	0	+	91063991	91085520	0	4	159,101,266,495	0,577,3212,21034
chr12	91063991	91085464	ENST00000501008	0	+	91063991	91085464	0	4	159,101,266,439	0,577,3212,21034
chr12	91072906	91073663	H1_polyA+.44177	0	.	91072906	91073663	0	1	757	0
chr12	91073521	91075907	B_Cells_Pritchard.1301649	0	.	91073521	91075907	0	1	2386	0
chr12	91074817	91075321	CD4_Plagnol_resting.23577	0	.	91074817	91075321	0	1	504	0
chr12	91076419	91079874	B_cells_Cheung.75760	0	.	91076419	91079874	0	1	3455	0
chr12	91104439	91104868	CD4_Snyder.29661	0	.	91104439	91104868	0	1	429	0
chr12	91106418	91128586	B_Cells_Pritchard.1301695	0	+	91106418	91128586	0	6	1466,197,487,1459,598,60	0,1478,2333,4510,6100,22108
chr12	91110909	91113159	B_cells_Cheung.75173	0	.	91110909	91113159	0	1	2250	0
chr12	91131064	91134743	B_cells_Cheung.75202	0	.	91131064	91134743	0	1	3679	0
chr12	91146806	91147709	B_cells_Cheung.75197	0	.	91146806	91147709	0	1	903	0
chr12	91150739	91151474	B_cells_Cheung.75201	0	.	91150739	91151474	0	1	735	0
chr12	91153903	91190947	B_Cells_Pritchard.1301889	0	+	91153903	91190947	0	6	689,140,781,731,595,922	0,20331,20479,22625,23989,36122
chr12	91154186	91154727	B_cells_Cheung.75213	0	.	91154186	91154727	0	1	541	0
chr12	91156929	91157235	B_cells_Cheung.75217	0	.	91156929	91157235	0	1	306	0
chr12	91165320	91206869	B_cells_Cheung.75239	0	-	91165320	91206869	0	6	633,193,247,467,95,479	0,11740,12918,21099,25108,41070
chr12	91173295	91174069	B_Cells_Pritchard.1301997	0	-	91173295	91174069	0	1	774	0
chr12	91176740	91177060	B_cells_Cheung.75253	0	.	91176740	91177060	0	1	320	0
chr12	91213373	91214459	B_Cells_Pritchard.1302233	0	.	91213373	91214459	0	1	1086	0
chr12	91213640	91214469	B_cells_Cheung.75233	0	.	91213640	91214469	0	1	829	0
chr12	91217858	91218316	B_cells_Cheung.75236	0	.	91217858	91218316	0	1	458	0
chr12	91240917	91241281	B_cells_Cheung.75283	0	.	91240917	91241281	0	1	364	0
chr12	91245676	91247082	B_cells_Cheung.75291	0	.	91245676	91247082	0	1	1406	0
chr12	91247173	91247907	B_cells_Cheung.75290	0	.	91247173	91247907	0	1	734	0
chr12	91247260	91249677	B_Cells_Pritchard.1302337	0	.	91247260	91249677	0	1	2417	0
chr12	91276320	91277394	B_cells_Cheung.75304	0	.	91276320	91277394	0	1	1074	0
chr12	91410753	91415538	B_Cells_Pritchard.1302713	0	.	91410753	91415538	0	1	4785	0
chr12	91411265	91415527	B_cells_Cheung.75409	0	.	91411265	91415527	0	1	4262	0
chr12	91415669	91425672	B_cells_Cheung.75410	0	.	91415669	91425672	0	1	10003	0
chr12	91419630	91430028	B_Cells_Pritchard.1302717	0	+	91419630	91430028	0	4	5567,524,571,682	0,6329,8499,9716
chr12	91448542	91449107	MIP101.26305	0	.	91448542	91449107	0	1	565	0
chr12	91448547	91449117	melanoma_Garraway_short_term_cultures.26075	0	.	91448547	91449117	0	1	570	0
chr12	91448625	91449717	B_Cells_Pritchard.1302797	0	.	91448625	91449717	0	1	1092	0
chr12	91456786	91457569	B_Cells_Pritchard.1302827	0	.	91456786	91457569	0	1	783	0
chr12	91467937	91468814	B_cells_Cheung.75349	0	.	91467937	91468814	0	1	877	0
chr12	91468681	91471752	B_Cells_Pritchard.1302863	0	+	91468681	91471752	0	1	3071	0
chr12	91471041	91474338	B_cells_Cheung.75351	0	+	91471041	91474338	0	2	591,210	0,3087
chr12	91471329	91471693	A549_Myers.30022	0	.	91471329	91471693	0	1	364	0
chr12	91472713	91473440	B_Cells_Pritchard.1302867	0	+	91472713	91473440	0	1	727	0
chr12	91473037	91473418	B_cells_Cheung.75353	0	.	91473037	91473418	0	1	381	0
chr12	91474538	91478021	B_Cells_Pritchard.1302873	0	+	91474538	91478021	0	1	3483	0
chr12	91474967	91548160	B_cells_Cheung.75354	0	+	91474967	91548160	0	4	538,1269,262,503	0,25938,72258,72690
chr12	91489861	91512377	B_Cells_Pritchard.1302883	0	-	91489861	91512377	0	6	3421,284,6661,176,87,2225	0,6976,8483,15531,15904,20291
chr12	91498344	91502193	B_Cells_Pritchard.1302885	0	+	91498344	91502193	0	1	3849	0
chr12	91510789	91511885	CD4_Snyder.29666	0	.	91510789	91511885	0	1	1096	0
chr12	91515164	91516133	B_Cells_Pritchard.1302927	0	.	91515164	91516133	0	1	969	0
chr12	91517788	91518269	B_Cells_Pritchard.1302933	0	.	91517788	91518269	0	1	481	0
chr12	91519202	91521155	B_Cells_Pritchard.1302941	0	.	91519202	91521155	0	1	1953	0
chr12	91529247	91530042	B_Cells_Pritchard.1302969	0	.	91529247	91530042	0	1	795	0
chr12	91533993	91534522	B_Cells_Pritchard.1302991	0	.	91533993	91534522	0	1	529	0
chr12	91548241	91548749	B_Cells_Pritchard.1303035	0	.	91548241	91548749	0	1	508	0
chr12	91548293	91548808	B_cells_Cheung.75372	0	.	91548293	91548808	0	1	515	0
chr12	91549518	91550692	B_Cells_Pritchard.1303039	0	.	91549518	91550692	0	1	1174	0
chr12	91551773	91552975	B_Cells_Pritchard.1303043	0	.	91551773	91552975	0	1	1202	0
chr12	91635922	91637113	B_cells_Cheung.75388	0	.	91635922	91637113	0	1	1191	0
chr12	91859701	91862328	B_cells_Cheung.75414	0	.	91859701	91862328	0	1	2627	0
chr12	91862597	91863154	B_cells_Cheung.75415	0	.	91862597	91863154	0	1	557	0
chr12	91866711	91870219	B_cells_Cheung.75419	0	.	91866711	91870219	0	1	3508	0
chr12	91876095	91880411	B_cells_Cheung.75425	0	.	91876095	91880411	0	1	4316	0
chr12	91886526	91887551	B_cells_Cheung.75431	0	.	91886526	91887551	0	1	1025	0
chr12	91887714	91888919	B_cells_Cheung.75432	0	.	91887714	91888919	0	1	1205	0
chr12	91897623	91902519	B_cells_Cheung.75437	0	.	91897623	91902519	0	1	4896	0
chr12	91920050	91920999	B_Cells_Pritchard.1305109	0	+	91920050	91920999	0	1	949	0
chr12	91921467	91937819	Rinn_00020519	0	+	91921467	91937819	0	3	413,137,503	0,2532,15849
chr12	91923858	91938468	HepG2_Caltech_ENCODE.13823	0	+	91923858	91938468	0	3	62,136,1151	0,142,13459
chr12	91923937	91937662	H1_polyA+.44188	0	+	91923937	91937662	0	2	199,345	0,13380
chr12	92006587	92008542	B_cells_Cheung.75482	0	.	92006587	92008542	0	1	1955	0
chr12	92028508	92035123	B_cells_Cheung.75496	0	.	92028508	92035123	0	1	6615	0
chr12	92039136	92041658	B_cells_Cheung.75499	0	.	92039136	92041658	0	1	2522	0
chr12	92043957	92048611	Rinn_00020872	0	-	92043957	92048611	0	2	2076,306	0,4348
chr12	92055255	92057138	B_Cells_Pritchard.1304091	0	.	92055255	92057138	0	1	1883	0
chr12	92070590	92070994	B_cells_Cheung.75502	0	.	92070590	92070994	0	1	404	0
chr12	92078233	92079458	B_cells_Cheung.75503	0	.	92078233	92079458	0	1	1225	0
chr12	92093804	92100050	Rinn_00020523	0	+	92093804	92100050	0	2	132,840	0,5406
chr12	92101573	92102730	prostate_carcinoma.38196	0	.	92101573	92102730	0	1	1157	0
chr12	92101597	92102339	B_cells_Cheung.75512	0	.	92101597	92102339	0	1	742	0
chr12	92101654	92102307	B_Cells_Pritchard.1304275	0	.	92101654	92102307	0	1	653	0
chr12	92101663	92102323	prostate_normal.22327	0	.	92101663	92102323	0	1	660	0
chr12	92236455	92237053	prostate_carcinoma.38215	0	.	92236455	92237053	0	1	598	0
chr12	92236692	92237403	melanoma_Garraway_short_term_cultures.26104	0	.	92236692	92237403	0	1	711	0
chr12	92239662	92240310	B_cells_Cheung.75523	0	.	92239662	92240310	0	1	648	0
chr12	92239744	92240604	melanoma_Garraway_short_term_cultures.26106	0	.	92239744	92240604	0	1	860	0
chr12	92241332	92242265	B_cells_Cheung.75525	0	.	92241332	92242265	0	1	933	0
chr12	92241420	92242225	prostate_carcinoma.38218	0	.	92241420	92242225	0	1	805	0
chr12	92260331	92260656	B_cells_Cheung.75529	0	.	92260331	92260656	0	1	325	0
chr12	92279202	92279985	REMC_MyoepithelialBreast.37583	0	.	92279202	92279985	0	1	783	0
chr12	92287398	92288304	B_Cells_Pritchard.1305743	0	+	92287398	92288304	0	2	295,422	0,484
chr12	92287847	92288302	B_cells_Cheung.75543	0	.	92287847	92288302	0	1	455	0
chr12	92288442	92289315	B_cells_Cheung.75544	0	.	92288442	92289315	0	1	873	0
chr12	92288453	92289341	melanoma_Garraway_short_term_cultures.26117	0	.	92288453	92289341	0	1	888	0
chr12	92429320	92430091	MDAMB468_Thompson.9681	0	.	92429320	92430091	0	1	771	0
chr12	92429422	92430103	MCF10A_Thompson.8502	0	.	92429422	92430103	0	1	681	0
chr12	92429554	92430098	CD4_Plagnol_resting.23623	0	.	92429554	92430098	0	1	544	0
chr12	92429554	92430107	HeLa_polyA+_Chen.14197	0	.	92429554	92430107	0	1	553	0
chr12	92429614	92430077	CD4_Snyder.29744	0	.	92429614	92430077	0	1	463	0
chr12	92429645	92430097	liver_polyA+.52515	0	.	92429645	92430097	0	1	452	0
chr12	92450615	92451115	prostate_carcinoma.38887	0	.	92450615	92451115	0	1	500	0
chr12	92450695	92451328	REMC_BreastStem.20040	0	.	92450695	92451328	0	1	633	0
chr12	92457763	92458391	prostate_carcinoma.38895	0	.	92457763	92458391	0	1	628	0
chr12	92460340	92463806	HIT000026967	0	-	92460340	92463806	0	1	3466	0
chr12	92460612	92463397	melanoma_Garraway_short_term_cultures.26169	0	-	92460612	92463397	0	2	600,420	0,2365
chr12	92461048	92463484	H9_polyA+.17483	0	-	92461048	92463484	0	2	164,507	0,1929
chr12	92462882	92463430	CD4_Plagnol_activated.24354	0	.	92462882	92463430	0	1	548	0
chr12	92462937	92463716	melanoma_Garraway_short_term_cultures.26171	0	.	92462937	92463716	0	1	779	0
chr12	92462951	92463498	liver_polyA+.52541	0	.	92462951	92463498	0	1	547	0
chr12	92465580	92467783	B_cells_Cheung.75662	0	.	92465580	92467783	0	1	2203	0
chr12	92466681	92472984	B_Cells_Pritchard.1305459	0	+	92466681	92472984	0	2	1079,896	0,5407
chr12	92482777	92483248	K562.17858	0	.	92482777	92483248	0	1	471	0
chr12	92482822	92483249	melanoma_Garraway_short_term_cultures.26175	0	.	92482822	92483249	0	1	427	0
chr12	92496625	92497073	prostate_normal.22534	0	.	92496625	92497073	0	1	448	0
chr12	92506816	92507891	prostate_carcinoma.38237	0	.	92506816	92507891	0	1	1075	0
chr12	92508818	92509995	prostate_carcinoma.38238	0	.	92508818	92509995	0	1	1177	0
chr12	92509069	92509720	prostate_normal.22363	0	.	92509069	92509720	0	1	651	0
chr12	92509405	92520897	pHIT000112035	0	-	92509405	92520897	0	2	312,183	0,11309
chr12	92812828	92814556	REMC_MyoepithelialBreast.37610	0	.	92812828	92814556	0	1	1728	0
chr12	92814200	92814554	liver_polyA+.52659	0	.	92814200	92814554	0	1	354	0
chr12	92827115	92827550	prostate_carcinoma.38296	0	.	92827115	92827550	0	1	435	0
chr12	92830116	92830864	prostate_carcinoma.38298	0	.	92830116	92830864	0	1	748	0
chr12	92964911	92967220	REMC_LuminalBreast.40071	0	+	92964911	92967220	0	3	74,121,593	0,837,1716
chr12	93017277	93018789	prostate_carcinoma.38320	0	.	93017277	93018789	0	1	1512	0
chr12	93018163	93018788	prostate_normal.22389	0	.	93018163	93018788	0	1	625	0
chr12	93019059	93020222	prostate_carcinoma.38318	0	.	93019059	93020222	0	1	1163	0
chr12	93027402	93027796	prostate_normal.22395	0	.	93027402	93027796	0	1	394	0
chr12	93057721	93058308	B_Cells_Pritchard.1307319	0	.	93057721	93058308	0	1	587	0
chr12	93058008	93058318	H9_polyA+.17508	0	.	93058008	93058318	0	1	310	0
chr12	93058025	93058337	B_cells_Cheung.75687	0	.	93058025	93058337	0	1	312	0
chr12	93058673	93059020	H1_polyA+.44269	0	.	93058673	93059020	0	1	347	0
chr12	93063173	93065611	B_cells_Cheung.75689	0	.	93063173	93065611	0	1	2438	0
chr12	93377909	93379967	HIT000013883	0	+	93377909	93379967	0	1	2058	0
chr12	93377909	93380475	NR_027035	0	+	93377909	93380475	0	1	2566	0
chr12	93377925	93379888	HIT000097890	0	+	93377925	93379888	0	1	1963	0
chr12	93377926	93380489	HIT000093676	0	+	93377926	93380489	0	1	2563	0
chr12	93392503	93393216	B_cells_Cheung.75706	0	.	93392503	93393216	0	1	713	0
chr12	93450664	93451077	B_cells_Cheung.75728	0	.	93450664	93451077	0	1	413	0
chr12	93453913	93454753	B_Cells_Pritchard.1308191	0	.	93453913	93454753	0	1	840	0
chr12	93463301	93464157	B_cells_Cheung.75738	0	.	93463301	93464157	0	1	856	0
chr12	93464449	93465530	B_cells_Cheung.75739	0	.	93464449	93465530	0	1	1081	0
chr12	93468822	93469468	prostate_normal.22431	0	.	93468822	93469468	0	1	646	0
chr12	93471248	93473061	REMC_LuminalBreast.40165	0	.	93471248	93473061	0	1	1813	0
chr12	93471801	93473209	B_cells_Cheung.75745	0	.	93471801	93473209	0	1	1408	0
chr12	93472359	93472803	prostate_carcinoma.38327	0	.	93472359	93472803	0	1	444	0
chr12	93479512	93480656	B_cells_Cheung.75751	0	.	93479512	93480656	0	1	1144	0
chr12	93479591	93482278	B_Cells_Pritchard.1308629	0	-	93479591	93482278	0	2	1081,1481	0,1206
chr12	93578967	93582330	B_cells_Cheung.79669	0	.	93578967	93582330	0	1	3363	0
chr12	93585663	93613068	B_Cells_Pritchard.1308685	0	-	93585663	93613068	0	13	681,3734,946,756,4281,195,712,514,933,160,380,4193,1989	0,3964,7895,8891,9668,14205,15311,16386,16933,17932,18234,19257,25416
chr12	93587245	93614748	B_Cells_Pritchard.1308683	0	+	93587245	93614748	0	11	144,4616,1061,1587,2502,2465,30,120,1946,2247,1521	0,1507,6227,9318,11161,13745,16296,16351,18693,23352,25982
chr12	93618361	93624408	B_Cells_Pritchard.1308641	0	+	93618361	93624408	0	1	6047	0
chr12	93619805	93620440	melanoma_Garraway_short_term_cultures.26225	0	.	93619805	93620440	0	1	635	0
chr12	93624567	93629466	B_Cells_Pritchard.1308645	0	.	93624567	93629466	0	1	4899	0
chr12	93630533	93636649	B_cells_Cheung.79671	0	.	93630533	93636649	0	1	6116	0
chr12	93636772	93648208	B_cells_Cheung.79672	0	.	93636772	93648208	0	1	11436	0
chr12	93638899	93646028	B_Cells_Pritchard.1308675	0	+	93638899	93646028	0	3	241,2054,1859	0,3098,5270
chr12	93644513	93645183	prostate_carcinoma.38346	0	.	93644513	93645183	0	1	670	0
chr12	93648445	93653670	B_Cells_Pritchard.1308681	0	-	93648445	93653670	0	2	2635,2556	0,2669
chr12	93651218	93652368	prostate_carcinoma.38349	0	.	93651218	93652368	0	1	1150	0
chr12	93653848	93663117	B_Cells_Pritchard.1308713	0	-	93653848	93663117	0	5	2525,1285,1299,89,2337	0,3556,4986,6718,6932
chr12	93658876	93660041	prostate_carcinoma.38352	0	.	93658876	93660041	0	1	1165	0
chr12	93659385	93660058	prostate_normal.22437	0	.	93659385	93660058	0	1	673	0
chr12	93666378	93676384	B_Cells_Pritchard.1308703	0	-	93666378	93676384	0	3	7721,788,731	0,7836,9275
chr12	93669768	93672260	HIT000003607	0	+	93669768	93672260	0	1	2492	0
chr12	93669875	93676710	B_Cells_Pritchard.1308701	0	+	93669875	93676710	0	3	4262,805,1149	0,4411,5686
chr12	93680274	93720358	B_Cells_Pritchard.1309301	0	-	93680274	93720358	0	10	1904,1271,1868,1389,2358,2869,1129,5627,2144,4183	0,1982,5537,7405,10526,13634,16515,23952,31817,35901
chr12	93681331	93681767	A549_Myers.30131	0	.	93681331	93681767	0	1	436	0
chr12	93689644	93714490	B_Cells_Pritchard.1309299	0	+	93689644	93714490	0	6	1710,6390,1176,2807,2699,4257	0,1751,13014,14582,17397,20589
chr12	93693613	93694614	prostate_carcinoma.38358	0	.	93693613	93694614	0	1	1001	0
chr12	93698060	93704145	B_cells_Cheung.79681	0	.	93698060	93704145	0	1	6085	0
chr12	93709135	93711177	H1_polyA+.44355	0	.	93709135	93711177	0	1	2042	0
chr12	93720489	93728632	B_Cells_Pritchard.1308721	0	+	93720489	93728632	0	4	1965,295,1150,2997	0,3700,3996,5146
chr12	93722995	93723623	prostate_carcinoma.38364	0	.	93722995	93723623	0	1	628	0
chr12	93739497	93741548	B_cells_Cheung.79682	0	.	93739497	93741548	0	1	2051	0
chr12	93754421	93788069	B_cells_Cheung.79692	0	+	93754421	93788069	0	2	9519,4950	0,28698
chr12	93755613	93761235	B_Cells_Pritchard.1308771	0	+	93755613	93761235	0	2	2262,3167	0,2455
chr12	93761339	93768174	B_Cells_Pritchard.1308773	0	+	93761339	93768174	0	3	2005,1379,2408	0,2932,4427
chr12	93768358	93779600	B_cells_Cheung.79690	0	.	93768358	93779600	0	1	11242	0
chr12	93768373	93779727	B_Cells_Pritchard.1308777	0	+	93768373	93779727	0	2	5306,6046	0,5308
chr12	93769912	93782287	B_Cells_Pritchard.1308779	0	-	93769912	93782287	0	6	2614,555,134,1195,865,1411	0,3841,4583,8475,9946,10964
chr12	93782443	93792035	B_Cells_Pritchard.1308783	0	+	93782443	93792035	0	2	4971,3852	0,5740
chr12	93782598	93786997	B_cells_Cheung.79691	0	.	93782598	93786997	0	1	4399	0
chr12	93790209	93790834	prostate_carcinoma.38374	0	.	93790209	93790834	0	1	625	0
chr12	93791532	93791948	A549_Myers.30135	0	.	93791532	93791948	0	1	416	0
chr12	93798241	93799147	MIP101.26397	0	.	93798241	93799147	0	1	906	0
chr12	93845904	93846406	B_Cells_Pritchard.1309027	0	.	93845904	93846406	0	1	502	0
chr12	93866981	93867294	B_Cells_Pritchard.1309107	0	.	93866981	93867294	0	1	313	0
chr12	93876597	93884368	B_Cells_Pritchard.1309143	0	-	93876597	93884368	0	2	218,511	0,7260
chr12	93934340	93934650	B_cells_Cheung.75789	0	.	93934340	93934650	0	1	310	0
chr12	94224573	94225844	B_cells_Cheung.75910	0	.	94224573	94225844	0	1	1271	0
chr12	94224755	94225934	CD4_Plagnol_resting.23688	0	.	94224755	94225934	0	1	1179	0
chr12	94498474	94500321	H1_polyA+.44952	0	.	94498474	94500321	0	1	1847	0
chr12	94501263	94503246	H1_polyA+.44954	0	.	94501263	94503246	0	1	1983	0
chr12	94558252	94559284	H1_polyA+.44983	0	.	94558252	94559284	0	1	1032	0
chr12	94572967	94573895	H1_polyA+.44990	0	.	94572967	94573895	0	1	928	0
chr12	94711502	94711860	liver_polyA+.52870	0	.	94711502	94711860	0	1	358	0
chr12	94754845	94755537	A549_Myers.30211	0	+	94754845	94755537	0	2	160,156	0,536
chr12	94771103	94772507	H1_polyA+.44438	0	.	94771103	94772507	0	1	1404	0
chr12	95030670	95070043	Rinn_00020532	0	+	95030670	95070043	0	3	221,104,292	0,19514,39081
chr12	95040351	95041067	B_Cells_Pritchard.1312133	0	.	95040351	95041067	0	1	716	0
chr12	95190133	95190738	HeLa_polyA+_Chen.14287	0	.	95190133	95190738	0	1	605	0
chr12	95192734	95194366	CD4_Snyder.29910	0	.	95192734	95194366	0	1	1632	0
chr12	95193078	95194251	CD4_Plagnol_activated.24868	0	.	95193078	95194251	0	1	1173	0
chr12	95193234	95194251	B_cells_Cheung.75993	0	.	95193234	95194251	0	1	1017	0
chr12	95343728	95344135	HeLa_polyA+_Chen.14289	0	.	95343728	95344135	0	1	407	0
chr12	95368409	95370678	REMC_MyoepithelialBreast.37796	0	.	95368409	95370678	0	1	2269	0
chr12	95810998	95811316	B_cells_Cheung.76137	0	.	95810998	95811316	0	1	318	0
chr12	95876776	95879723	MIP101.26528	0	.	95876776	95879723	0	1	2947	0
chr12	95878321	95880291	B_cells_Cheung.76158	0	.	95878321	95880291	0	1	1970	0
chr12	95878358	95880361	B_Cells_Pritchard.1314329	0	.	95878358	95880361	0	1	2003	0
chr12	95878886	95883829	REMC_MyoepithelialBreast.37811	0	.	95878886	95883829	0	1	4943	0
chr12	95879526	95883548	REMC_LuminalBreast.40367	0	.	95879526	95883548	0	1	4022	0
chr12	95880053	95881932	MIP101.26529	0	.	95880053	95881932	0	1	1879	0
chr12	95880643	95881519	B_cells_Cheung.76159	0	.	95880643	95881519	0	1	876	0
chr12	95881052	95883098	B_Cells_Pritchard.1314333	0	.	95881052	95883098	0	1	2046	0
chr12	95907921	95966533	pHIT000112052	0	+	95907921	95966533	0	4	66,57,68,165	0,29050,47429,58447
chr12	95949976	95950313	B_cells_Cheung.76163	0	.	95949976	95950313	0	1	337	0
chr12	95951091	95952412	REMC_LuminalBreast.40370	0	.	95951091	95952412	0	1	1321	0
chr12	96130159	96130649	B_cells_Cheung.76169	0	.	96130159	96130649	0	1	490	0
chr12	96391914	96392402	MCF7_Burge_Thompson.11584	0	.	96391914	96392402	0	1	488	0
chr12	96395989	96397967	prostate_normal.22543	0	.	96395989	96397967	0	1	1978	0
chr12	96397442	96397948	H1_polyA+.44560	0	.	96397442	96397948	0	1	506	0
chr12	96404592	96406044	prostate_carcinoma.38541	0	.	96404592	96406044	0	1	1452	0
chr12	96413558	96413938	H1_rRNA-depleted_UCSD_REMC.34884	0	.	96413558	96413938	0	1	380	0
chr12	96413632	96413940	H9_polyA+.17642	0	.	96413632	96413940	0	1	308	0
chr12	96425211	96426799	B_cells_Cheung.76199	0	.	96425211	96426799	0	1	1588	0
chr12	96425244	96426538	H1_rRNA-depleted_UCSD_REMC.34923	0	.	96425244	96426538	0	1	1294	0
chr12	96425317	96427917	prostate_carcinoma.38550	0	.	96425317	96427917	0	1	2600	0
chr12	96425628	96426556	prostate_normal.22546	0	.	96425628	96426556	0	1	928	0
chr12	96436192	96441729	prostate_carcinoma.38554	0	.	96436192	96441729	0	1	5537	0
chr12	96446487	96448913	prostate_carcinoma.38556	0	.	96446487	96448913	0	1	2426	0
chr12	96447825	96448797	prostate_normal.22554	0	.	96447825	96448797	0	1	972	0
chr12	96448183	96448769	NEC_from_H9.29241	0	.	96448183	96448769	0	1	586	0
chr12	96481821	96482395	H9_polyA-_Chen.5616	0	.	96481821	96482395	0	1	574	0
chr12	96481822	96482810	B_cells_Cheung.76211	0	.	96481822	96482810	0	1	988	0
chr12	96481824	96482870	NEC_from_H9.29244	0	.	96481824	96482870	0	1	1046	0
chr12	96481824	96482878	T47D_Burge_Thompson.11184	0	.	96481824	96482878	0	1	1054	0
chr12	96481848	96482512	brain_AmbionMAQC.16905	0	.	96481848	96482512	0	1	664	0
chr12	96481972	96482388	H1_rRNA-depleted_UCSD_REMC.34935	0	.	96481972	96482388	0	1	416	0
chr12	96632769	96635010	prostate_carcinoma.38577	0	.	96632769	96635010	0	1	2241	0
chr12	97242307	97243026	B_cells_Cheung.76232	0	.	97242307	97243026	0	1	719	0
chr12	97247645	97247960	B_cells_Cheung.76235	0	.	97247645	97247960	0	1	315	0
chr12	97255661	97256388	B_cells_Cheung.76238	0	.	97255661	97256388	0	1	727	0
chr12	97369940	97370305	brain_AmbionMAQC.16906	0	.	97369940	97370305	0	1	365	0
chr12	97421900	97422857	H1_polyA+.44555	0	.	97421900	97422857	0	1	957	0
chr12	97421921	97422606	B_cells_Cheung.76279	0	.	97421921	97422606	0	1	685	0
chr12	98917025	98921520	REMC_BreastStem.20155	0	.	98917025	98921520	0	1	4495	0
chr12	98917070	98920376	REMC_MyoepithelialBreast.37897	0	.	98917070	98920376	0	1	3306	0
chr12	98930309	98930830	REMC_LuminalBreast.40520	0	.	98930309	98930830	0	1	521	0
chr12	98932455	98933146	REMC_MyoepithelialBreast.37903	0	.	98932455	98933146	0	1	691	0
chr12	98932456	98932962	REMC_LuminalBreast.40521	0	.	98932456	98932962	0	1	506	0
chr12	99070986	99072015	HepG2_Caltech_ENCODE.13971	0	.	99070986	99072015	0	1	1029	0
chr12	99071020	99073930	H1_polyA+.44617	0	.	99071020	99073930	0	1	2910	0
chr12	99071044	99072288	B_cells_Cheung.76601	0	.	99071044	99072288	0	1	1244	0
chr12	99071181	99072001	REMC_BreastStem.20165	0	.	99071181	99072001	0	1	820	0
chr12	99071489	99071905	BT474_Burge_Thompson.12820	0	.	99071489	99071905	0	1	416	0
chr12	99071679	99074144	liver_polyA+.53052	0	-	99071679	99074144	0	2	555,70	0,2395
chr12	99072356	99072820	prostate_normal.22606	0	.	99072356	99072820	0	1	464	0
chr12	99072896	99074049	HepG2_Caltech_ENCODE.13972	0	.	99072896	99074049	0	1	1153	0
chr12	99073095	99074216	REMC_LuminalBreast.40529	0	.	99073095	99074216	0	1	1121	0
chr12	99094948	99117915	REMC_LuminalBreast.40535	0	-	99094948	99117915	0	3	81,164,487	0,3513,22480
chr12	99094949	99117915	HeLa_polyA+_Chen.14323	0	-	99094949	99117915	0	3	80,164,487	0,3512,22479
chr12	99103838	99104850	H1_polyA+.44622	0	.	99103838	99104850	0	1	1012	0
chr12	99108088	99108622	HeLa_polyA-_Chen.7557	0	.	99108088	99108622	0	1	534	0
chr12	99112921	99113358	B_Cells_Pritchard.1321541	0	+	99112921	99113358	0	1	437	0
chr12	99114806	99115638	T47D_Burge_Thompson.11218	0	.	99114806	99115638	0	1	832	0
chr12	99116725	99117964	prostate_normal.22614	0	-	99116725	99117964	0	2	156,503	0,736
chr12	99259792	99261325	HIT000004708	0	+	99259792	99261325	0	1	1533	0
chr12	100658630	100660139	H1_polyA+.44720	0	.	100658630	100660139	0	1	1509	0
chr12	100659971	100660604	CD4_Plagnol_resting.23921	0	.	100659971	100660604	0	1	633	0
chr12	100660022	100660669	CD4_Plagnol_activated.24621	0	.	100660022	100660669	0	1	647	0
chr12	100660332	100660752	liver_polyA+.53228	0	.	100660332	100660752	0	1	420	0
chr12	100865880	100866848	REMC_BreastStem.20526	0	.	100865880	100866848	0	1	968	0
chr12	100866159	100870455	B_Cells_Pritchard.1325213	0	+	100866159	100870455	0	1	4296	0
chr12	100869396	100870299	REMC_BreastStem.20527	0	.	100869396	100870299	0	1	903	0
chr12	100871558	100875553	REMC_MyoepithelialBreast.38037	0	.	100871558	100875553	0	1	3995	0
chr12	100871593	100910683	B_Cells_Pritchard.1325273	0	-	100871593	100910683	0	12	12402,1831,3056,6782,76,155,1265,2000,1795,477,109,269	0,13659,15524,18634,25587,25913,26154,27662,29717,31766,32639,38821
chr12	100881773	100882233	A549_Myers.30427	0	.	100881773	100882233	0	1	460	0
chr12	100881799	100883694	REMC_MyoepithelialBreast.38041	0	.	100881799	100883694	0	1	1895	0
chr12	100882617	100884726	REMC_BreastStem.20530	0	.	100882617	100884726	0	1	2109	0
chr12	100909424	100910697	B_cells_Cheung.79389	0	.	100909424	100910697	0	1	1273	0
chr12	100910834	100911216	B_cells_Cheung.79390	0	.	100910834	100911216	0	1	382	0
chr12	100911287	100914352	B_cells_Cheung.79384	0	.	100911287	100914352	0	1	3065	0
chr12	100917632	100919997	B_cells_Cheung.79392	0	.	100917632	100919997	0	1	2365	0
chr12	100920146	100925329	B_cells_Cheung.79393	0	.	100920146	100925329	0	1	5183	0
chr12	101121109	101124517	B_cells_Cheung.76690	0	.	101121109	101124517	0	1	3408	0
chr12	101138837	101143205	H1_polyA+.44784	0	.	101138837	101143205	0	1	4368	0
chr12	101138925	101140295	B_cells_Cheung.76700	0	.	101138925	101140295	0	1	1370	0
chr12	101139040	101142103	B_Cells_Pritchard.1325699	0	.	101139040	101142103	0	1	3063	0
chr12	101139683	101140138	H1_rRNA-depleted_UCSD_REMC.35187	0	.	101139683	101140138	0	1	455	0
chr12	101144475	101145114	B_cells_Cheung.76704	0	.	101144475	101145114	0	1	639	0
chr12	101144606	101145091	B_Cells_Pritchard.1325709	0	.	101144606	101145091	0	1	485	0
chr12	101254512	101255508	REMC_BreastStem.20273	0	.	101254512	101255508	0	1	996	0
chr12	101255754	101257129	REMC_BreastStem.20274	0	.	101255754	101257129	0	1	1375	0
chr12	101298139	101299934	REMC_BreastStem.20307	0	.	101298139	101299934	0	1	1795	0
chr12	101307109	101307775	B_cells_Cheung.76721	0	.	101307109	101307775	0	1	666	0
chr12	101401665	101402660	B_Cells_Pritchard.1326471	0	.	101401665	101402660	0	1	995	0
chr12	101402301	101402629	B_cells_Cheung.76728	0	.	101402301	101402629	0	1	328	0
chr12	101457542	101458047	B_Cells_Pritchard.1326693	0	.	101457542	101458047	0	1	505	0
chr12	101461383	101461809	B_cells_Cheung.76763	0	.	101461383	101461809	0	1	426	0
chr12	101466447	101467168	B_Cells_Pritchard.1326737	0	.	101466447	101467168	0	1	721	0
chr12	101614053	101616566	H1_polyA+.44788	0	.	101614053	101616566	0	1	2513	0
chr12	101615119	101619436	REMC_BreastStem.20329	0	.	101615119	101619436	0	1	4317	0
chr12	101616129	101616557	B_Cells_Pritchard.1327161	0	.	101616129	101616557	0	1	428	0
chr12	101616671	101619154	H1_polyA+.44789	0	.	101616671	101619154	0	1	2483	0
chr12	101618093	101619094	B_cells_Cheung.76796	0	.	101618093	101619094	0	1	1001	0
chr12	101618409	101619135	B_Cells_Pritchard.1327173	0	.	101618409	101619135	0	1	726	0
chr12	101650976	101651548	B_cells_Cheung.76805	0	.	101650976	101651548	0	1	572	0
chr12	101656301	101742247	pHIT000112088	0	-	101656301	101742247	0	7	162,55,116,96,49,81,44	0,1606,24579,32051,77788,82743,85902
chr12	101667042	101667902	melanoma_Garraway_short_term_cultures.26506	0	.	101667042	101667902	0	1	860	0
chr12	101667469	101667906	B_Cells_Pritchard.1327379	0	.	101667469	101667906	0	1	437	0
chr12	101693188	101693626	K562.18044	0	.	101693188	101693626	0	1	438	0
chr12	101727172	101742307	HIT000094747	0	-	101727172	101742307	0	5	3352,105,120,56,104	0,4603,11833,13443,15031
chr12	101727190	101742307	NR_033855	0	-	101727190	101742307	0	5	3334,105,120,56,104	0,4585,11815,13425,15013
chr12	102118955	102119357	B_Cells_Pritchard.1328407	0	.	102118955	102119357	0	1	402	0
chr12	102118969	102119372	B_cells_Cheung.76840	0	.	102118969	102119372	0	1	403	0
chr12	102421216	102421908	A549_Myers.30451	0	.	102421216	102421908	0	1	692	0
chr12	102686432	102687686	MeWo_Garraway.13914	0	.	102686432	102687686	0	1	1254	0
chr12	102686581	102688098	prostate_normal.22720	0	.	102686581	102688098	0	1	1517	0
chr12	102686592	102687977	MDAMB231_Thompson.8797	0	.	102686592	102687977	0	1	1385	0
chr12	102686615	102687717	REMC_BreastStem.20342	0	.	102686615	102687717	0	1	1102	0
chr12	102686697	102688156	B_cells_Cheung.76887	0	.	102686697	102688156	0	1	1459	0
chr12	102686711	102688030	H9_polyA+.17790	0	.	102686711	102688030	0	1	1319	0
chr12	102686807	102687819	REMC_LuminalBreast.40657	0	.	102686807	102687819	0	1	1012	0
chr12	103030199	103030802	B_cells_Cheung.77031	0	.	103030199	103030802	0	1	603	0
chr12	103030231	103031328	B_Cells_Pritchard.1330631	0	+	103030231	103031328	0	2	479,402	0,695
chr12	103089659	103090458	A549_Myers.30526	0	.	103089659	103090458	0	1	799	0
chr12	103089843	103090355	B_Cells_Pritchard.1330781	0	.	103089843	103090355	0	1	512	0
chr12	103119406	103119805	A549_Myers.30528	0	.	103119406	103119805	0	1	399	0
chr12	103125595	103126099	A549_Myers.30530	0	.	103125595	103126099	0	1	504	0
chr12	103349045	103351834	REMC_LuminalBreast.40780	0	.	103349045	103351834	0	1	2789	0
chr12	103350663	103351057	A549_Myers.30553	0	.	103350663	103351057	0	1	394	0
chr12	103352301	103354421	REMC_LuminalBreast.40781	0	.	103352301	103354421	0	1	2120	0
chr12	103352537	103353521	H1_polyA+.44885	0	.	103352537	103353521	0	1	984	0
chr12	103358411	103360071	REMC_MyoepithelialBreast.76177	0	.	103358411	103360071	0	1	1660	0
chr12	103358550	103359674	REMC_BreastStem.20398	0	.	103358550	103359674	0	1	1124	0
chr12	103358662	103360020	REMC_LuminalBreast.40783	0	.	103358662	103360020	0	1	1358	0
chr12	103360440	103365298	REMC_MyoepithelialBreast.76178	0	.	103360440	103365298	0	1	4858	0
chr12	103361688	103364532	REMC_BreastStem.20400	0	.	103361688	103364532	0	1	2844	0
chr12	103365803	103366913	REMC_LuminalBreast.40785	0	.	103365803	103366913	0	1	1110	0
chr12	103365936	103366905	REMC_MyoepithelialBreast.76179	0	.	103365936	103366905	0	1	969	0
chr12	103369683	103370790	CD4_Plagnol_activated.24755	0	.	103369683	103370790	0	1	1107	0
chr12	103369698	103370973	B_cells_Cheung.77093	0	.	103369698	103370973	0	1	1275	0
chr12	103369765	103370887	REMC_MyoepithelialBreast.76181	0	.	103369765	103370887	0	1	1122	0
chr12	103371062	103372023	B_cells_Cheung.77094	0	.	103371062	103372023	0	1	961	0
chr12	103371087	103372020	CD4_Plagnol_resting.23994	0	.	103371087	103372020	0	1	933	0
chr12	103371089	103372036	REMC_LuminalBreast.40787	0	.	103371089	103372036	0	1	947	0
chr12	103682095	103688764	REMC_BreastStem.20404	0	.	103682095	103688764	0	1	6669	0
chr12	103684665	103686637	REMC_MyoepithelialBreast.38275	0	.	103684665	103686637	0	1	1972	0
chr12	103684728	103687724	melanoma_Garraway_short_term_cultures.26613	0	.	103684728	103687724	0	1	2996	0
chr12	103697715	103700140	REMC_BreastStem.20409	0	.	103697715	103700140	0	1	2425	0
chr12	103707949	103710877	REMC_LuminalBreast.40805	0	.	103707949	103710877	0	1	2928	0
chr12	103707950	103709041	B_cells_Cheung.77168	0	.	103707950	103709041	0	1	1091	0
chr12	103707962	103708838	B_Cells_Pritchard.1332257	0	.	103707962	103708838	0	1	876	0
chr12	103708024	103708385	A549_Myers.30580	0	.	103708024	103708385	0	1	361	0
chr12	103713237	103716730	REMC_LuminalBreast.40806	0	.	103713237	103716730	0	1	3493	0
chr12	103714153	103715268	REMC_MyoepithelialBreast.38277	0	.	103714153	103715268	0	1	1115	0
chr12	103934453	103935465	HepG2_Caltech_ENCODE.14116	0	.	103934453	103935465	0	1	1012	0
chr12	104008377	104008961	H1_polyA+.45029	0	.	104008377	104008961	0	1	584	0
chr12	104019035	104020956	H1_polyA+.45030	0	.	104019035	104020956	0	1	1921	0
chr12	104019839	104020213	prostate_carcinoma.38965	0	.	104019839	104020213	0	1	374	0
chr12	104019895	104020702	MIP101.26796	0	.	104019895	104020702	0	1	807	0
chr12	104088705	104089175	CD4_Snyder.30407	0	.	104088705	104089175	0	1	470	0
chr12	104176665	104177414	B_Cells_Pritchard.1333327	0	.	104176665	104177414	0	1	749	0
chr12	104205577	104206838	B_Cells_Pritchard.1333437	0	.	104205577	104206838	0	1	1261	0
chr12	104211521	104226688	B_Cells_Pritchard.1333457	0	-	104211521	104226688	0	6	2630,995,1541,76,96,152	0,3845,9324,14679,14917,15015
chr12	104221901	104222410	B_cells_Cheung.77323	0	.	104221901	104222410	0	1	509	0
chr12	104229987	104230713	B_Cells_Pritchard.1333527	0	.	104229987	104230713	0	1	726	0
chr12	104232256	104241479	B_Cells_Pritchard.1333661	0	+	104232256	104241479	0	4	2484,86,89,6448	0,2509,2621,2775
chr12	104236846	104238443	B_cells_Cheung.77334	0	.	104236846	104238443	0	1	1597	0
chr12	104297926	104299876	B_cells_Cheung.77405	0	.	104297926	104299876	0	1	1950	0
chr12	104297954	104310663	B_Cells_Pritchard.1333763	0	-	104297954	104310663	0	7	2205,626,17,1440,509,1337,2486	0,2531,4227,4452,6045,6934,10223
chr12	104300513	104301797	B_cells_Cheung.77407	0	.	104300513	104301797	0	1	1284	0
chr12	104300543	104301658	prostate_carcinoma.38994	0	.	104300543	104301658	0	1	1115	0
chr12	104300723	104301272	prostate_normal.22839	0	.	104300723	104301272	0	1	549	0
chr12	104307051	104307834	B_cells_Cheung.77414	0	.	104307051	104307834	0	1	783	0
chr12	104307897	104308756	B_cells_Cheung.77415	0	.	104307897	104308756	0	1	859	0
chr12	104309108	104310640	B_cells_Cheung.77416	0	.	104309108	104310640	0	1	1532	0
chr12	104310086	104310665	prostate_carcinoma.39000	0	.	104310086	104310665	0	1	579	0
chr12	104313319	104330757	prostate_carcinoma.39004	0	+	104313319	104330757	0	3	302,41,2138	0,4048,15300
chr12	104313596	104331064	Rinn_00020555	0	+	104313596	104331064	0	2	25,2446	0,15022
chr12	104314495	104314914	B_cells_Cheung.77419	0	.	104314495	104314914	0	1	419	0
chr12	104321268	104321754	B_Cells_Pritchard.1333803	0	.	104321268	104321754	0	1	486	0
chr12	104324208	104325955	B_Cells_Pritchard.1333811	0	.	104324208	104325955	0	1	1747	0
chr12	104326181	104330757	B_Cells_Pritchard.1333813	0	.	104326181	104330757	0	1	4576	0
chr12	104328159	104330757	prostate_carcinoma.39005	0	.	104328159	104330757	0	1	2598	0
chr12	104328514	104330716	prostate_normal.22842	0	.	104328514	104330716	0	1	2202	0
chr12	104328564	104330762	MIP101.26825	0	.	104328564	104330762	0	1	2198	0
chr12	104328666	104330727	H1_polyA+.45051	0	.	104328666	104330727	0	1	2061	0
chr12	104328706	104330727	H1_polyA+.45052	0	+	104328706	104330727	0	2	79,1818	0,203
chr12	104329158	104330232	HepG2_Caltech_ENCODE.14131	0	.	104329158	104330232	0	1	1074	0
chr12	104329306	104330766	melanoma_Garraway_short_term_cultures.26648	0	.	104329306	104330766	0	1	1460	0
chr12	104336670	104337021	pHIT000022468	0	-	104336670	104337021	0	1	351	0
chr12	104387801	104389071	prostate_carcinoma.39009	0	.	104387801	104389071	0	1	1270	0
chr12	104387825	104388678	B_Cells_Pritchard.1334055	0	.	104387825	104388678	0	1	853	0
chr12	104414855	104415347	B_Cells_Pritchard.1334087	0	.	104414855	104415347	0	1	492	0
chr12	104424472	104424878	B_Cells_Pritchard.1334129	0	.	104424472	104424878	0	1	406	0
chr12	104491972	104494131	prostate_carcinoma.39015	0	.	104491972	104494131	0	1	2159	0
chr12	104659431	104661442	prostate_carcinoma.39021	0	.	104659431	104661442	0	1	2011	0
chr12	104933731	104935222	HIT000301503	0	+	104933731	104935222	0	1	1491	0
chr12	104933886	104934601	H1_polyA+.45053	0	+	104933886	104934601	0	3	179,7,127	0,564,588
chr12	104934177	104934583	B_cells_Cheung.77349	0	.	104934177	104934583	0	1	406	0
chr12	104953367	104953978	prostate_carcinoma.39023	0	.	104953367	104953978	0	1	611	0
chr12	104954074	104954834	prostate_carcinoma.39024	0	.	104954074	104954834	0	1	760	0
chr12	104956364	104957083	prostate_carcinoma.39025	0	.	104956364	104957083	0	1	719	0
chr12	105087892	105088314	B_Cells_Pritchard.1335495	0	.	105087892	105088314	0	1	422	0
chr12	105089233	105089722	K562.18144	0	.	105089233	105089722	0	1	489	0
chr12	105089240	105089673	HepG2_Caltech_ENCODE.14145	0	.	105089240	105089673	0	1	433	0
chr12	105089257	105090154	H1_polyA+.45118	0	.	105089257	105090154	0	1	897	0
chr12	105089258	105090161	melanoma_Garraway_short_term_cultures.26650	0	.	105089258	105090161	0	1	903	0
chr12	105089258	105090172	B_Cells_Pritchard.1335499	0	.	105089258	105090172	0	1	914	0
chr12	105089263	105090159	MIP101.26831	0	-	105089263	105090159	0	2	113,729	0,167
chr12	105089415	105089767	BT474_Burge_Thompson.12947	0	.	105089415	105089767	0	1	352	0
chr12	105089432	105090010	prostate_carcinoma.39051	0	.	105089432	105090010	0	1	578	0
chr12	105089536	105089989	CD4_Plagnol_activated.24899	0	.	105089536	105089989	0	1	453	0
chr12	105089545	105090024	B_cells_Cheung.77355	0	.	105089545	105090024	0	1	479	0
chr12	105089727	105090150	HepG2_Caltech_ENCODE.14146	0	.	105089727	105090150	0	1	423	0
chr12	105089835	105090153	T47D_Burge_Thompson.11341	0	.	105089835	105090153	0	1	318	0
chr12	105168690	105169511	REMC_MyoepithelialBreast.38356	0	.	105168690	105169511	0	1	821	0
chr12	105168798	105170694	HIT000017278	0	-	105168798	105170694	0	1	1896	0
chr12	105168800	105171094	REMC_LuminalBreast.40875	0	.	105168800	105171094	0	1	2294	0
chr12	105169020	105170855	brain_AmbionMAQC.17120	0	.	105169020	105170855	0	1	1835	0
chr12	105169305	105170326	MIP101.26839	0	.	105169305	105170326	0	1	1021	0
chr12	105169504	105170341	melanoma_Garraway_short_term_cultures.26654	0	.	105169504	105170341	0	1	837	0
chr12	105169618	105171126	REMC_MyoepithelialBreast.38357	0	.	105169618	105171126	0	1	1508	0
chr12	105169943	105170308	A549_Myers.30715	0	.	105169943	105170308	0	1	365	0
chr12	105170212	105170983	REMC_BreastStem.20442	0	.	105170212	105170983	0	1	771	0
chr12	105179433	105180461	REMC_LuminalBreast.40878	0	.	105179433	105180461	0	1	1028	0
chr12	105180550	105181469	REMC_LuminalBreast.40879	0	.	105180550	105181469	0	1	919	0
chr12	105192116	105193133	B_Cells_Pritchard.1335779	0	.	105192116	105193133	0	1	1017	0
chr12	105429152	105429840	HeLa_polyA+_Chen.14500	0	.	105429152	105429840	0	1	688	0
chr12	105430628	105431143	MCF7_Burge_Thompson.11755	0	.	105430628	105431143	0	1	515	0
chr12	105432567	105433523	MIP101.26855	0	.	105432567	105433523	0	1	956	0
chr12	105434707	105435718	MIP101.26857	0	.	105434707	105435718	0	1	1011	0
chr12	105808394	105809560	REMC_MyoepithelialBreast.38393	0	.	105808394	105809560	0	1	1166	0
chr12	105809087	105809423	H1_rRNA-depleted_UCSD_REMC.35409	0	.	105809087	105809423	0	1	336	0
chr12	105820963	105821401	pHIT000022475	0	+	105820963	105821401	0	1	438	0
chr12	105831285	105831723	pHIT000022476	0	-	105831285	105831723	0	1	438	0
chr12	105845299	105850239	REMC_LuminalBreast.40919	0	.	105845299	105850239	0	1	4940	0
chr12	105845338	105846566	REMC_MyoepithelialBreast.38395	0	.	105845338	105846566	0	1	1228	0
chr12	105845385	105846493	REMC_BreastStem.20495	0	.	105845385	105846493	0	1	1108	0
chr12	106013106	106016235	REMC_BreastStem.20536	0	.	106013106	106016235	0	1	3129	0
chr12	106016358	106021576	REMC_LuminalBreast.40926	0	.	106016358	106021576	0	1	5218	0
chr12	106019513	106021560	REMC_BreastStem.20539	0	.	106019513	106021560	0	1	2047	0
chr12	106020108	106022757	REMC_MyoepithelialBreast.38415	0	.	106020108	106022757	0	1	2649	0
chr12	106021686	106026261	REMC_LuminalBreast.40927	0	.	106021686	106026261	0	1	4575	0
chr12	106023222	106025913	REMC_MyoepithelialBreast.38416	0	.	106023222	106025913	0	1	2691	0
chr12	106024494	106026261	REMC_BreastStem.20541	0	.	106024494	106026261	0	1	1767	0
chr12	106027592	106029556	REMC_LuminalBreast.40928	0	.	106027592	106029556	0	1	1964	0
chr12	106189305	106189742	H1_polyA+.45157	0	.	106189305	106189742	0	1	437	0
chr12	106189383	106189752	B_Cells_Pritchard.1338445	0	.	106189383	106189752	0	1	369	0
chr12	106233610	106235078	REMC_LuminalBreast.40934	0	.	106233610	106235078	0	1	1468	0
chr12	106581684	106582383	REMC_MyoepithelialBreast.38425	0	.	106581684	106582383	0	1	699	0
chr12	106587560	106591301	REMC_MyoepithelialBreast.38427	0	.	106587560	106591301	0	1	3741	0
chr12	106723637	106723942	A549_Myers.30864	0	.	106723637	106723942	0	1	305	0
chr12	106748468	106750191	H1_polyA+.45200	0	.	106748468	106750191	0	1	1723	0
chr12	106748682	106752333	prostate_carcinoma.39143	0	+	106748682	106752333	0	2	1799,473	0,3178
chr12	106748682	106750573	prostate_carcinoma.39142	0	.	106748682	106750573	0	1	1891	0
chr12	106749367	106751379	prostate_normal.22918	0	.	106749367	106751379	0	1	2012	0
chr12	106753496	106766431	prostate_carcinoma.39146	0	-	106753496	106766431	0	6	964,43,1081,75,187,2562	0,1563,1661,3702,9811,10373
chr12	106754214	106756270	H1_polyA+.45202	0	.	106754214	106756270	0	1	2056	0
chr12	106760954	106762099	H1_polyA+.45204	0	.	106760954	106762099	0	1	1145	0
chr12	106761171	106761737	prostate_carcinoma.39147	0	.	106761171	106761737	0	1	566	0
chr12	106761193	106761658	prostate_normal.22924	0	.	106761193	106761658	0	1	465	0
chr12	106761726	106762409	prostate_normal.22925	0	.	106761726	106762409	0	1	683	0
chr12	106762246	106762902	prostate_carcinoma.39148	0	.	106762246	106762902	0	1	656	0
chr12	106762409	106762896	prostate_normal.22926	0	.	106762409	106762896	0	1	487	0
chr12	106762456	106762894	A549_Myers.30865	0	.	106762456	106762894	0	1	438	0
chr12	106763584	106807526	pHIT000112142	0	+	106763584	106807526	0	6	160,187,167,291,126,164	0,246,34879,35651,37134,43778
chr12	106791006	106791457	A549_Myers.30866	0	.	106791006	106791457	0	1	451	0
chr12	106794681	106800928	H1_polyA+.45208	0	.	106794681	106800928	0	1	6247	0
chr12	106797771	106801061	B_cells_Cheung.77552	0	.	106797771	106801061	0	1	3290	0
chr12	106798121	106801033	BT474_Burge_Thompson.12972	0	.	106798121	106801033	0	1	2912	0
chr12	106798239	106801430	B_Cells_Pritchard.1340115	0	+	106798239	106801430	0	1	3191	0
chr12	106799973	106821649	K562.18181	0	-	106799973	106821649	0	2	273,736	0,20940
chr12	106811037	106811409	B_cells_Cheung.77555	0	.	106811037	106811409	0	1	372	0
chr12	106811083	106811415	B_Cells_Pritchard.1340167	0	-	106811083	106811415	0	1	332	0
chr12	106811670	106812134	B_cells_Cheung.77556	0	.	106811670	106812134	0	1	464	0
chr12	106811673	106812993	B_Cells_Pritchard.1340173	0	+	106811673	106812993	0	1	1320	0
chr12	106812000	106815518	H1_polyA+.45210	0	.	106812000	106815518	0	1	3518	0
chr12	106814113	106815370	B_cells_Cheung.77559	0	.	106814113	106815370	0	1	1257	0
chr12	106815678	106821665	H1_polyA+.45211	0	.	106815678	106821665	0	1	5987	0
chr12	106819519	106821649	K562.18182	0	.	106819519	106821649	0	1	2130	0
chr12	106819545	106821653	B_cells_Cheung.77563	0	.	106819545	106821653	0	1	2108	0
chr12	106820833	106821627	BT474_Burge_Thompson.12973	0	.	106820833	106821627	0	1	794	0
chr12	106820844	106833556	B_Cells_Pritchard.1340221	0	-	106820844	106833556	0	3	513,255,48	0,572,12664
chr12	106820910	106821716	MCF7_Burge_Thompson.11780	0	.	106820910	106821716	0	1	806	0
chr12	106820943	106821640	BT20_Thompson.8465	0	.	106820943	106821640	0	1	697	0
chr12	106820966	106821643	prostate_carcinoma.39151	0	-	106820966	106821643	0	2	377,218	0,459
chr12	106821055	106821855	XR_039336	0	-	106821055	106821855	0	2	595,88	0,712
chr12	106821055	106821855	XR_016079	0	-	106821055	106821855	0	2	676,123	0,677
chr12	106821056	106821678	NR_037629	0	-	106821056	106821678	0	1	622	0
chr12	106821087	106821658	H9_polyA+.17921	0	.	106821087	106821658	0	1	571	0
chr12	106821296	106821643	REMC_LuminalBreast.41010	0	.	106821296	106821643	0	1	347	0
chr12	106821523	106821908	A549_Myers.30868	0	.	106821523	106821908	0	1	385	0
chr12	106828295	106830527	HIT000092477	0	-	106828295	106830527	0	1	2232	0
chr12	106828308	106830527	XR_078783	0	-	106828308	106830527	0	1	2219	0
chr12	106828308	106830527	XR_078460	0	-	106828308	106830527	0	1	2219	0
chr12	106830162	106830866	A549_Myers.30869	0	.	106830162	106830866	0	1	704	0
chr12	107201571	107203273	prostate_carcinoma.39158	0	.	107201571	107203273	0	1	1702	0
chr12	107204181	107204529	A549_Myers.30915	0	.	107204181	107204529	0	1	348	0
chr12	107281515	107281827	B_Cells_Pritchard.1341201	0	.	107281515	107281827	0	1	312	0
chr12	107352019	107418599	HIT000057309	0	-	107352019	107418599	0	19	181,100,151,43,79,111,129,81,137,123,140,65,185,95,185,990,70,134,152	0,4687,8436,9162,13329,14273,14645,19638,23683,25068,25332,27517,30149,37896,38889,45426,52060,58337,66428
chr12	107380332	107381038	B_Cells_Pritchard.1341555	0	.	107380332	107381038	0	1	706	0
chr12	107412117	107414829	REMC_LuminalBreast.41012	0	.	107412117	107414829	0	1	2712	0
chr12	107420781	107423094	REMC_LuminalBreast.41014	0	.	107420781	107423094	0	1	2313	0
chr12	107424699	107429142	REMC_LuminalBreast.41016	0	.	107424699	107429142	0	1	4443	0
chr12	107520724	107521226	B_cells_Cheung.77585	0	.	107520724	107521226	0	1	502	0
chr12	107521526	107521889	B_Cells_Pritchard.1341809	0	.	107521526	107521889	0	1	363	0
chr12	107521604	107522269	REMC_MyoepithelialBreast.38578	0	.	107521604	107522269	0	1	665	0
chr12	107521619	107522062	B_cells_Cheung.77586	0	.	107521619	107522062	0	1	443	0
chr12	107525590	107526051	B_cells_Cheung.77588	0	.	107525590	107526051	0	1	461	0
chr12	107525995	107526694	B_Cells_Pritchard.1341831	0	.	107525995	107526694	0	1	699	0
chr12	107527392	107528850	B_Cells_Pritchard.1341835	0	.	107527392	107528850	0	1	1458	0
chr12	107529073	107529389	B_Cells_Pritchard.1341837	0	.	107529073	107529389	0	1	316	0
chr12	107531852	107532867	REMC_LuminalBreast.41031	0	.	107531852	107532867	0	1	1015	0
chr12	107533363	107536996	CD4_Plagnol_activated.25202	0	.	107533363	107536996	0	1	3633	0
chr12	107533657	107535828	B_Cells_Pritchard.1341859	0	.	107533657	107535828	0	1	2171	0
chr12	107533834	107534613	B_cells_Cheung.77589	0	.	107533834	107534613	0	1	779	0
chr12	107535163	107536839	REMC_LuminalBreast.41033	0	.	107535163	107536839	0	1	1676	0
chr12	107535943	107537074	B_Cells_Pritchard.1341861	0	.	107535943	107537074	0	1	1131	0
chr12	107536549	107536898	prostate_carcinoma.39188	0	.	107536549	107536898	0	1	349	0
chr12	107537137	107538773	CD4_Plagnol_activated.25203	0	.	107537137	107538773	0	1	1636	0
chr12	107537223	107537641	melanoma_Garraway_short_term_cultures.26724	0	.	107537223	107537641	0	1	418	0
chr12	107552114	107560742	K562.18296	0	+	107552114	107560742	0	5	420,90,930,61,1964	0,870,1098,2185,6664
chr12	107553772	107560655	Rinn_00020560	0	+	107553772	107560655	0	3	179,62,1878	0,526,5005
chr12	107554807	107558334	B_Cells_Pritchard.1341887	0	-	107554807	107558334	0	2	253,1459	0,2068
chr12	107554888	107556423	REMC_MyoepithelialBreast.38605	0	.	107554888	107556423	0	1	1535	0
chr12	107554951	107556169	MeWo_Garraway.14102	0	.	107554951	107556169	0	1	1218	0
chr12	107554993	107556529	melanoma_Garraway_short_term_cultures.26730	0	.	107554993	107556529	0	1	1536	0
chr12	107558416	107560901	REMC_MyoepithelialBreast.38607	0	.	107558416	107560901	0	1	2485	0
chr12	107558554	107559702	melanoma_Garraway_short_term_cultures.26732	0	.	107558554	107559702	0	1	1148	0
chr12	107558594	107560742	K562.18298	0	.	107558594	107560742	0	1	2148	0
chr12	107558606	107559804	H1_polyA+.45251	0	.	107558606	107559804	0	1	1198	0
chr12	107559209	107560627	prostate_carcinoma.39265	0	.	107559209	107560627	0	1	1418	0
chr12	107559426	107560655	CD4_Plagnol_activated.25081	0	.	107559426	107560655	0	1	1229	0
chr12	107560086	107561183	MIP101.26924	0	.	107560086	107561183	0	1	1097	0
chr12	107676831	107687187	A549_Myers.30954	0	-	107676831	107687187	0	4	73,80,107,514	0,5231,8323,9842
chr12	107677710	107678283	H1_polyA+.45264	0	.	107677710	107678283	0	1	573	0
chr12	107678361	107686783	H1_polyA+.45265	0	-	107678361	107686783	0	2	607,315	0,8107
chr12	107678425	107686837	MIP101.26940	0	-	107678425	107686837	0	2	543,369	0,8043
chr12	107678478	107679270	REMC_MyoepithelialBreast.38593	0	.	107678478	107679270	0	1	792	0
chr12	107686315	107687187	A549_Myers.30955	0	.	107686315	107687187	0	1	872	0
chr12	107686389	107686893	B_Cells_Pritchard.1342271	0	.	107686389	107686893	0	1	504	0
chr12	107689914	107692518	REMC_MyoepithelialBreast.38595	0	.	107689914	107692518	0	1	2604	0
chr12	107691205	107692018	A549_Myers.30958	0	.	107691205	107692018	0	1	813	0
chr12	107692615	107693917	REMC_MyoepithelialBreast.38596	0	.	107692615	107693917	0	1	1302	0
chr12	107696777	107697559	MDAMB231_Thompson.8860	0	.	107696777	107697559	0	1	782	0
chr12	107696961	107697604	MIP101.26942	0	.	107696961	107697604	0	1	643	0
chr12	107697010	107697473	MeWo_Garraway.14019	0	.	107697010	107697473	0	1	463	0
chr12	107697726	107698792	REMC_LuminalBreast.41080	0	.	107697726	107698792	0	1	1066	0
chr12	107697727	107698490	brain_AmbionMAQC.17179	0	.	107697727	107698490	0	1	763	0
chr12	107697736	107698702	REMC_BreastStem.20600	0	.	107697736	107698702	0	1	966	0
chr12	107697755	107698667	MeWo_Garraway.14020	0	.	107697755	107698667	0	1	912	0
chr12	107697762	107698672	MIP101.26943	0	.	107697762	107698672	0	1	910	0
chr12	107697768	107698699	B_cells_Cheung.77607	0	.	107697768	107698699	0	1	931	0
chr12	107776193	107777070	B_Cells_Pritchard.1342449	0	+	107776193	107777070	0	1	877	0
chr12	107776305	107781608	B_cells_Cheung.77645	0	+	107776305	107781608	0	2	635,92	0,5211
chr12	108035294	108035698	liver_polyA+.54038	0	.	108035294	108035698	0	1	404	0
chr12	108461593	108462471	prostate_carcinoma.39379	0	.	108461593	108462471	0	1	878	0
chr12	108463984	108465370	REMC_LuminalBreast.41184	0	.	108463984	108465370	0	1	1386	0
chr12	108464663	108465818	prostate_carcinoma.39382	0	.	108464663	108465818	0	1	1155	0
chr12	108465943	108468976	brain_AmbionMAQC.17223	0	.	108465943	108468976	0	1	3033	0
chr12	108466227	108466618	A549_Myers.31080	0	.	108466227	108466618	0	1	391	0
chr12	108471867	108474025	H1_polyA+.45321	0	.	108471867	108474025	0	1	2158	0
chr12	108471925	108473418	B_cells_Cheung.77711	0	.	108471925	108473418	0	1	1493	0
chr12	108473061	108474226	REMC_LuminalBreast.41187	0	.	108473061	108474226	0	1	1165	0
chr12	109026590	109026924	A549_Myers.31190	0	.	109026590	109026924	0	1	334	0
chr12	109160950	109161617	H1_polyA+.45398	0	.	109160950	109161617	0	1	667	0
chr12	109160960	109162623	REMC_LuminalBreast.41212	0	.	109160960	109162623	0	1	1663	0
chr12	109162042	109162621	H1_polyA+.45399	0	.	109162042	109162621	0	1	579	0
chr12	109165161	109166291	REMC_LuminalBreast.41214	0	.	109165161	109166291	0	1	1130	0
chr12	109165200	109166085	H1_polyA+.45401	0	.	109165200	109166085	0	1	885	0
chr12	109166602	109166977	B_cells_Cheung.77814	0	.	109166602	109166977	0	1	375	0
chr12	109166604	109167443	B_Cells_Pritchard.1346033	0	+	109166604	109167443	0	1	839	0
chr12	109167425	109169803	REMC_LuminalBreast.41216	0	.	109167425	109169803	0	1	2378	0
chr12	109169105	109169999	melanoma_Garraway_short_term_cultures.26906	0	.	109169105	109169999	0	1	894	0
chr12	109169288	109171024	H1_polyA+.45403	0	.	109169288	109171024	0	1	1736	0
chr12	109169560	109170157	A549_Myers.31202	0	.	109169560	109170157	0	1	597	0
chr12	109170149	109171621	REMC_LuminalBreast.41217	0	.	109170149	109171621	0	1	1472	0
chr12	109171161	109172358	H1_polyA+.45404	0	.	109171161	109172358	0	1	1197	0
chr12	109171842	109172265	A549_Myers.31203	0	.	109171842	109172265	0	1	423	0
chr12	109178839	109179697	REMC_LuminalBreast.41218	0	.	109178839	109179697	0	1	858	0
chr12	109178859	109179794	H1_polyA+.45410	0	.	109178859	109179794	0	1	935	0
chr12	109178881	109179685	B_Cells_Pritchard.1346095	0	+	109178881	109179685	0	1	804	0
chr12	109187906	109189683	REMC_LuminalBreast.41210	0	.	109187906	109189683	0	1	1777	0
chr12	109191591	109195942	H1_polyA+.45416	0	.	109191591	109195942	0	1	4351	0
chr12	109194672	109195198	B_cells_Cheung.77830	0	.	109194672	109195198	0	1	526	0
chr12	109196052	109196627	H1_polyA+.45417	0	.	109196052	109196627	0	1	575	0
chr12	109196347	109196681	B_cells_Cheung.77833	0	.	109196347	109196681	0	1	334	0
chr12	109274323	109282323	REMC_MyoepithelialBreast.38851	0	.	109274323	109282323	0	1	8000	0
chr12	109274929	109290956	liver_polyA+.54296	0	-	109274929	109290956	0	2	72,294	0,15733
chr12	109276668	109277336	B_cells_Cheung.77850	0	.	109276668	109277336	0	1	668	0
chr12	109276802	109277665	melanoma_Garraway_short_term_cultures.26930	0	.	109276802	109277665	0	1	863	0
chr12	109278739	109281154	REMC_LuminalBreast.41244	0	.	109278739	109281154	0	1	2415	0
chr12	109282459	109284133	REMC_MyoepithelialBreast.38852	0	.	109282459	109284133	0	1	1674	0
chr12	109282471	109285288	REMC_BreastStem.20691	0	.	109282471	109285288	0	1	2817	0
chr12	109283052	109284134	REMC_LuminalBreast.41246	0	.	109283052	109284134	0	1	1082	0
chr12	109287462	109290072	REMC_BreastStem.20694	0	.	109287462	109290072	0	1	2610	0
chr12	109287476	109288763	REMC_LuminalBreast.41249	0	.	109287476	109288763	0	1	1287	0
chr12	109288674	109289602	B_cells_Cheung.77855	0	.	109288674	109289602	0	1	928	0
chr12	109290788	109291480	REMC_LuminalBreast.41251	0	.	109290788	109291480	0	1	692	0
chr12	109292056	109293543	HepG2_Caltech_ENCODE.14282	0	.	109292056	109293543	0	1	1487	0
chr12	109292058	109293416	HeLa_polyA+_Chen.14591	0	.	109292058	109293416	0	1	1358	0
chr12	109292189	109293745	prostate_normal.23082	0	.	109292189	109293745	0	1	1556	0
chr12	109620116	109621236	REMC_BreastStem.20789	0	.	109620116	109621236	0	1	1120	0
chr12	109621950	109622775	B_cells_Cheung.77960	0	.	109621950	109622775	0	1	825	0
chr12	109630585	109631005	CD4_Plagnol_resting.24488	0	.	109630585	109631005	0	1	420	0
chr12	109630609	109631496	BT474_Burge_Thompson.13089	0	.	109630609	109631496	0	1	887	0
chr12	109630610	109631228	BT20_Thompson.8551	0	.	109630610	109631228	0	1	618	0
chr12	109635454	109636116	B_Cells_Pritchard.1346003	0	-	109635454	109636116	0	1	662	0
chr12	109635461	109636793	REMC_BreastStem.20793	0	.	109635461	109636793	0	1	1332	0
chr12	109635614	109636897	REMC_MyoepithelialBreast.38752	0	.	109635614	109636897	0	1	1283	0
chr12	109635614	109636087	MIP101.27142	0	.	109635614	109636087	0	1	473	0
chr12	109637025	109637520	MIP101.27140	0	.	109637025	109637520	0	1	495	0
chr12	109690037	109703604	B_Cells_Pritchard.1346345	0	-	109690037	109703604	0	3	460,195,127	0,6187,13440
chr12	109749025	109749568	B_Cells_Pritchard.1346497	0	.	109749025	109749568	0	1	543	0
chr12	109749067	109749459	A549_Myers.31284	0	.	109749067	109749459	0	1	392	0
chr12	109830788	109831482	B_cells_Cheung.77976	0	.	109830788	109831482	0	1	694	0
chr12	109830843	109831313	A549_Myers.31289	0	.	109830843	109831313	0	1	470	0
chr12	109852563	109852996	BT474_Burge_Thompson.13071	0	.	109852563	109852996	0	1	433	0
chr12	109860546	109880507	Rinn_00020561	0	+	109860546	109880507	0	2	153,300	0,19661
chr12	109867685	109869173	H9_polyA+.18043	0	.	109867685	109869173	0	1	1488	0
chr12	109878603	109883466	H9_polyA+.18038	0	.	109878603	109883466	0	1	4863	0
chr12	109943034	109948008	Rinn_00020922	0	-	109943034	109948008	0	2	192,278	0,4696
chr12	109946400	109946930	A549_Myers.31295	0	.	109946400	109946930	0	1	530	0
chr12	110274508	110277774	H1_polyA+.45611	0	.	110274508	110277774	0	1	3266	0
chr12	110276420	110277956	REMC_LuminalBreast.41282	0	.	110276420	110277956	0	1	1536	0
chr12	110296842	110297144	B_cells_Cheung.78017	0	.	110296842	110297144	0	1	302	0
chr12	110299715	110300116	B_cells_Cheung.78021	0	.	110299715	110300116	0	1	401	0
chr12	110302000	110302871	B_cells_Cheung.78024	0	.	110302000	110302871	0	1	871	0
chr12	110302007	110302672	B_Cells_Pritchard.1348319	0	.	110302007	110302672	0	1	665	0
chr12	110302164	110302524	T47D_Burge_Thompson.11465	0	.	110302164	110302524	0	1	360	0
chr12	110302193	110302930	melanoma_Garraway_short_term_cultures.26981	0	.	110302193	110302930	0	1	737	0
chr12	110302219	110303111	H1_polyA+.45566	0	.	110302219	110303111	0	1	892	0
chr12	110302959	110303720	B_cells_Cheung.78025	0	.	110302959	110303720	0	1	761	0
chr12	110304618	110305016	B_cells_Cheung.78026	0	.	110304618	110305016	0	1	398	0
chr12	110304640	110304977	H1_polyA+.45568	0	.	110304640	110304977	0	1	337	0
chr12	110306673	110307898	H1_polyA+.45569	0	.	110306673	110307898	0	1	1225	0
chr12	110306824	110307293	B_Cells_Pritchard.1348335	0	.	110306824	110307293	0	1	469	0
chr12	110307222	110307979	B_cells_Cheung.78030	0	.	110307222	110307979	0	1	757	0
chr12	110307357	110307997	melanoma_Garraway_short_term_cultures.26983	0	.	110307357	110307997	0	1	640	0
chr12	110307419	110307782	A549_Myers.31340	0	.	110307419	110307782	0	1	363	0
chr12	110320425	110321801	REMC_MyoepithelialBreast.38763	0	.	110320425	110321801	0	1	1376	0
chr12	110325173	110326023	B_Cells_Pritchard.1348367	0	.	110325173	110326023	0	1	850	0
chr12	110325400	110325968	REMC_LuminalBreast.41288	0	.	110325400	110325968	0	1	568	0
chr12	110523348	110524906	H1_polyA+.45772	0	.	110523348	110524906	0	1	1558	0
chr12	110523537	110523951	B_cells_Cheung.78046	0	.	110523537	110523951	0	1	414	0
chr12	110526340	110526665	B_cells_Cheung.78050	0	.	110526340	110526665	0	1	325	0
chr12	110530546	110531002	B_cells_Cheung.78054	0	.	110530546	110531002	0	1	456	0
chr12	110531652	110532597	REMC_MyoepithelialBreast.38825	0	.	110531652	110532597	0	1	945	0
chr12	110537618	110538966	REMC_MyoepithelialBreast.38827	0	.	110537618	110538966	0	1	1348	0
chr12	110538098	110538911	H1_polyA+.45780	0	.	110538098	110538911	0	1	813	0
chr12	110543790	110545619	REMC_LuminalBreast.41331	0	.	110543790	110545619	0	1	1829	0
chr12	110543800	110544451	H1_polyA+.45617	0	.	110543800	110544451	0	1	651	0
chr12	110552503	110554106	REMC_LuminalBreast.41338	0	.	110552503	110554106	0	1	1603	0
chr12	110555644	110557522	REMC_LuminalBreast.41339	0	.	110555644	110557522	0	1	1878	0
chr12	110555938	110556311	B_cells_Cheung.78066	0	.	110555938	110556311	0	1	373	0
chr12	110557070	110557430	B_cells_Cheung.78068	0	.	110557070	110557430	0	1	360	0
chr12	110557514	110559312	REMC_MyoepithelialBreast.38835	0	.	110557514	110559312	0	1	1798	0
chr12	110557527	110558722	REMC_BreastStem.20807	0	.	110557527	110558722	0	1	1195	0
chr12	110557654	110558793	REMC_LuminalBreast.41340	0	.	110557654	110558793	0	1	1139	0
chr12	110557702	110559461	H1_polyA+.45625	0	.	110557702	110559461	0	1	1759	0
chr12	110558233	110559153	MIP101.27505	0	.	110558233	110559153	0	1	920	0
chr12	110561858	110563005	REMC_BreastStem.20808	0	.	110561858	110563005	0	1	1147	0
chr12	110682857	110686891	B_cells_Cheung.78106	0	.	110682857	110686891	0	1	4034	0
chr12	110684808	110685424	H1_polyA+.45641	0	.	110684808	110685424	0	1	616	0
chr12	110684811	110685138	liver_polyA+.55292	0	.	110684811	110685138	0	1	327	0
chr12	110684832	110685641	BT474_Burge_Thompson.13223	0	.	110684832	110685641	0	1	809	0
chr12	110736734	110740079	REMC_LuminalBreast.41354	0	.	110736734	110740079	0	1	3345	0
chr12	110738001	110740133	REMC_BreastStem.20817	0	.	110738001	110740133	0	1	2132	0
chr12	110739066	110739508	B_Cells_Pritchard.1348719	0	.	110739066	110739508	0	1	442	0
chr12	110739157	110739574	prostate_normal.23265	0	.	110739157	110739574	0	1	417	0
chr12	110739162	110739547	BT474_Burge_Thompson.13099	0	.	110739162	110739547	0	1	385	0
chr12	110739181	110739567	brain_AmbionMAQC.17374	0	.	110739181	110739567	0	1	386	0
chr12	110739289	110739817	liver_polyA+.54769	0	.	110739289	110739817	0	1	528	0
chr12	110739289	110739709	kidney_Gilad.35905	0	.	110739289	110739709	0	1	420	0
chr12	110745668	110746730	REMC_LuminalBreast.41355	0	.	110745668	110746730	0	1	1062	0
chr12	110760549	110760950	B_cells_Cheung.78141	0	.	110760549	110760950	0	1	401	0
chr12	110761959	110762281	lymph_node_Burge.19664	0	.	110761959	110762281	0	1	322	0
chr12	110761960	110762287	HME_Burge.16358	0	.	110761960	110762287	0	1	327	0
chr12	110826120	110826915	prostate_carcinoma.40271	0	.	110826120	110826915	0	1	795	0
chr12	110827420	110836379	prostate_carcinoma.40272	0	+	110827420	110836379	0	2	146,739	0,8220
chr12	110829905	110830280	CD4_Plagnol_activated.25345	0	.	110829905	110830280	0	1	375	0
chr12	110830526	110831533	B_cells_Cheung.78169	0	.	110830526	110831533	0	1	1007	0
chr12	110830545	110835688	REMC_LuminalBreast.41564	0	.	110830545	110835688	0	1	5143	0
chr12	110830546	110835567	REMC_MyoepithelialBreast.38945	0	.	110830546	110835567	0	1	5021	0
chr12	110832527	110833671	REMC_BreastStem.20827	0	.	110832527	110833671	0	1	1144	0
chr12	110832636	110833660	B_cells_Cheung.78171	0	.	110832636	110833660	0	1	1024	0
chr12	110832919	110833393	MIP101.27542	0	.	110832919	110833393	0	1	474	0
chr12	110833717	110836516	B_cells_Cheung.78172	0	.	110833717	110836516	0	1	2799	0
chr12	110835756	110836936	REMC_LuminalBreast.41565	0	.	110835756	110836936	0	1	1180	0
chr12	110842464	110843870	MIP101.27543	0	.	110842464	110843870	0	1	1406	0
chr12	110842902	110843878	REMC_BreastStem.20830	0	.	110842902	110843878	0	1	976	0
chr12	110843213	110843927	B_cells_Cheung.78185	0	.	110843213	110843927	0	1	714	0
chr12	110843317	110845745	B_Cells_Pritchard.1349335	0	+	110843317	110845745	0	1	2428	0
chr12	110947332	110947781	B_cells_Cheung.78215	0	.	110947332	110947781	0	1	449	0
chr12	111032866	111033544	REMC_MyoepithelialBreast.38983	0	.	111032866	111033544	0	1	678	0
chr12	111033050	111033879	REMC_LuminalBreast.41382	0	.	111033050	111033879	0	1	829	0
chr12	111033982	111035514	REMC_LuminalBreast.41383	0	.	111033982	111035514	0	1	1532	0
chr12	111037465	111039501	REMC_LuminalBreast.41384	0	.	111037465	111039501	0	1	2036	0
chr12	111038386	111039499	REMC_MyoepithelialBreast.38984	0	.	111038386	111039499	0	1	1113	0
chr12	111042071	111045468	REMC_LuminalBreast.41453	0	.	111042071	111045468	0	1	3397	0
chr12	111077598	111079942	REMC_LuminalBreast.41464	0	.	111077598	111079942	0	1	2344	0
chr12	111080439	111081237	REMC_BreastStem.20863	0	.	111080439	111081237	0	1	798	0
chr12	111323074	111323654	REMC_MyoepithelialBreast.38862	0	.	111323074	111323654	0	1	580	0
chr12	111323126	111323825	REMC_LuminalBreast.41447	0	.	111323126	111323825	0	1	699	0
chr12	111434725	111436398	REMC_LuminalBreast.41617	0	.	111434725	111436398	0	1	1673	0
chr12	111434850	111441822	REMC_MyoepithelialBreast.38894	0	.	111434850	111441822	0	1	6972	0
chr12	111435494	111436258	B_Cells_Pritchard.1349839	0	.	111435494	111436258	0	1	764	0
chr12	111436610	111439909	REMC_LuminalBreast.41618	0	.	111436610	111439909	0	1	3299	0
chr12	111446882	111448552	REMC_MyoepithelialBreast.38898	0	.	111446882	111448552	0	1	1670	0
chr12	111456400	111457584	REMC_MyoepithelialBreast.38901	0	.	111456400	111457584	0	1	1184	0
chr12	111461520	111462372	REMC_MyoepithelialBreast.38902	0	.	111461520	111462372	0	1	852	0
chr12	111468444	111469871	REMC_MyoepithelialBreast.38906	0	.	111468444	111469871	0	1	1427	0
chr12	111472343	111473588	REMC_MyoepithelialBreast.38910	0	.	111472343	111473588	0	1	1245	0
chr12	111472351	111473650	REMC_LuminalBreast.41539	0	.	111472351	111473650	0	1	1299	0
chr12	111473646	111476462	REMC_MyoepithelialBreast.38911	0	.	111473646	111476462	0	1	2816	0
chr12	111485869	111487218	REMC_MyoepithelialBreast.38915	0	.	111485869	111487218	0	1	1349	0
chr12	111823332	111823745	A549_Myers.31535	0	.	111823332	111823745	0	1	413	0
chr12	112062181	112063677	REMC_BreastStem.20915	0	.	112062181	112063677	0	1	1496	0
chr12	112312934	112313461	CD4_Snyder.31012	0	.	112312934	112313461	0	1	527	0
chr12	112327589	112328770	REMC_LuminalBreast.41634	0	.	112327589	112328770	0	1	1181	0
chr12	112361735	112362210	A549_Myers.31607	0	.	112361735	112362210	0	1	475	0
chr12	112399329	112402807	H1_polyA+.45952	0	.	112399329	112402807	0	1	3478	0
chr12	112399330	112402882	NEC_from_H9.30250	0	.	112399330	112402882	0	1	3552	0
chr12	112399991	112400410	A549_Myers.31614	0	.	112399991	112400410	0	1	419	0
chr12	112401983	112402674	brain_AmbionMAQC.17476	0	.	112401983	112402674	0	1	691	0
chr12	112419907	112420470	B_Cells_Pritchard.1352433	0	.	112419907	112420470	0	1	563	0
chr12	112424572	112425030	NEC_from_H9.30248	0	.	112424572	112425030	0	1	458	0
chr12	112506100	112507851	K562.18475	0	.	112506100	112507851	0	1	1751	0
chr12	112506147	112507858	H1_polyA+.45910	0	.	112506147	112507858	0	1	1711	0
chr12	112510800	112512497	H1_polyA+.45912	0	.	112510800	112512497	0	1	1697	0
chr12	112512055	112512400	H1_rRNA-depleted_UCSD_REMC.36002	0	.	112512055	112512400	0	1	345	0
chr12	112530285	112530607	B_Cells_Pritchard.1352719	0	.	112530285	112530607	0	1	322	0
chr12	112532397	112533492	H1_polyA+.45913	0	.	112532397	112533492	0	1	1095	0
chr12	112534217	112534577	H1_rRNA-depleted_UCSD_REMC.36003	0	.	112534217	112534577	0	1	360	0
chr12	112551333	112552951	H1_polyA+.45914	0	.	112551333	112552951	0	1	1618	0
chr12	112556134	112557009	H1_polyA+.45915	0	.	112556134	112557009	0	1	875	0
chr12	112558275	112559255	H1_polyA+.45917	0	.	112558275	112559255	0	1	980	0
chr12	112561034	112562107	H1_polyA+.45918	0	.	112561034	112562107	0	1	1073	0
chr12	112615324	112616014	HepG2_Caltech_ENCODE.14409	0	.	112615324	112616014	0	1	690	0
chr12	112646876	112647235	A549_Myers.31627	0	.	112646876	112647235	0	1	359	0
chr12	112663422	112670117	A549_Myers.31633	0	+	112663422	112670117	0	2	31,3962	0,2733
chr12	112664091	112664476	A549_Myers.31635	0	.	112664091	112664476	0	1	385	0
chr12	112666763	112695871	Rinn_00020222	0	-	112666763	112695871	0	2	2020,70	0,29038
chr12	112666764	112695871	HIT000021787	0	-	112666764	112695871	0	2	2019,69	0,29038
chr12	112666822	112669060	H1_polyA+.45983	0	.	112666822	112669060	0	1	2238	0
chr12	112666990	112695868	melanoma_Garraway_short_term_cultures.27207	0	-	112666990	112695868	0	2	1793,66	0,28812
chr12	112667727	112668848	H9_polyA+.18180	0	.	112667727	112668848	0	1	1121	0
chr12	112667854	112668777	REMC_MyoepithelialBreast.39135	0	.	112667854	112668777	0	1	923	0
chr12	112668394	112668776	MB435_Burge.17061	0	.	112668394	112668776	0	1	382	0
chr12	112673727	112677836	REMC_MyoepithelialBreast.39137	0	.	112673727	112677836	0	1	4109	0
chr12	112679217	112680542	REMC_MyoepithelialBreast.39138	0	.	112679217	112680542	0	1	1325	0
chr12	112682835	112685207	khalil_538	0	.	112682835	112685207	0	2	31,868	0,1504
chr12	112683533	112685175	REMC_MyoepithelialBreast.39140	0	.	112683533	112685175	0	1	1642	0
chr12	112685373	112687227	REMC_MyoepithelialBreast.39141	0	.	112685373	112687227	0	1	1854	0
chr12	112694538	112696082	REMC_MyoepithelialBreast.39145	0	.	112694538	112696082	0	1	1544	0
chr12	112699685	112702942	REMC_MyoepithelialBreast.39147	0	.	112699685	112702942	0	1	3257	0
chr12	112701247	112728825	B_Cells_Pritchard.1353291	0	+	112701247	112728825	0	6	68,162,2597,1076,1523,527	0,436,13170,20487,25509,27051
chr12	112703043	112705167	REMC_MyoepithelialBreast.39148	0	.	112703043	112705167	0	1	2124	0
chr12	112704961	112705577	B_Cells_Pritchard.1353321	0	-	112704961	112705577	0	1	616	0
chr12	112710245	112713920	REMC_LuminalBreast.41640	0	.	112710245	112713920	0	1	3675	0
chr12	112710264	112711490	REMC_BreastStem.21060	0	.	112710264	112711490	0	1	1226	0
chr12	112711463	112713886	B_cells_Cheung.78583	0	.	112711463	112713886	0	1	2423	0
chr12	112711540	112714344	REMC_BreastStem.21061	0	.	112711540	112714344	0	1	2804	0
chr12	112712561	112713551	CD4_Plagnol_activated.25572	0	.	112712561	112713551	0	1	990	0
chr12	112712645	112713861	prostate_carcinoma.39745	0	.	112712645	112713861	0	1	1216	0
chr12	112712746	112713651	HepG2_Caltech_ENCODE.14413	0	.	112712746	112713651	0	1	905	0
chr12	112712764	112713863	H1_polyA+.45987	0	.	112712764	112713863	0	1	1099	0
chr12	112713954	112716285	B_cells_Cheung.78584	0	.	112713954	112716285	0	1	2331	0
chr12	112713978	112720340	H1_polyA+.45988	0	.	112713978	112720340	0	1	6362	0
chr12	112714003	112722167	REMC_LuminalBreast.41641	0	.	112714003	112722167	0	1	8164	0
chr12	112714072	112715287	CD4_Plagnol_resting.24729	0	.	112714072	112715287	0	1	1215	0
chr12	112714118	112728825	B_Cells_Pritchard.1353293	0	-	112714118	112728825	0	5	330,2332,434,561,2069	0,564,7616,8131,12638
chr12	112714456	112716790	HepG2_Caltech_ENCODE.14414	0	.	112714456	112716790	0	1	2334	0
chr12	112714490	112716921	REMC_BreastStem.21062	0	.	112714490	112716921	0	1	2431	0
chr12	112715501	112717364	prostate_carcinoma.39746	0	.	112715501	112717364	0	1	1863	0
chr12	112715879	112716564	CD4_Plagnol_resting.24732	0	.	112715879	112716564	0	1	685	0
chr12	112716373	112716952	B_cells_Cheung.78585	0	.	112716373	112716952	0	1	579	0
chr12	112717024	112717854	REMC_BreastStem.21063	0	.	112717024	112717854	0	1	830	0
chr12	112717116	112721420	B_Cells_Pritchard.1353373	0	-	112717116	112721420	0	5	262,443,1896,919,667	0,326,769,2665,3637
chr12	112717445	112718511	prostate_carcinoma.39747	0	.	112717445	112718511	0	1	1066	0
chr12	112717484	112718183	B_cells_Cheung.78587	0	.	112717484	112718183	0	1	699	0
chr12	112718249	112721454	B_cells_Cheung.78588	0	.	112718249	112721454	0	1	3205	0
chr12	112718612	112719986	prostate_carcinoma.39748	0	.	112718612	112719986	0	1	1374	0
chr12	112718869	112719483	melanoma_Garraway_short_term_cultures.27216	0	.	112718869	112719483	0	1	614	0
chr12	112719141	112719571	HepG2_Caltech_ENCODE.14418	0	.	112719141	112719571	0	1	430	0
chr12	112721511	112726621	B_cells_Cheung.78589	0	.	112721511	112726621	0	1	5110	0
chr12	112722243	112725766	REMC_LuminalBreast.41642	0	.	112722243	112725766	0	1	3523	0
chr12	112722454	112725831	H1_polyA+.45990	0	.	112722454	112725831	0	1	3377	0
chr12	112723006	112724825	B_Cells_Pritchard.1353381	0	-	112723006	112724825	0	1	1819	0
chr12	112723078	112723446	prostate_carcinoma.39751	0	.	112723078	112723446	0	1	368	0
chr12	112727995	112728644	brain_AmbionMAQC.17481	0	.	112727995	112728644	0	1	649	0
chr12	112729244	112731882	HepG2_Caltech_ENCODE.14415	0	.	112729244	112731882	0	1	2638	0
chr12	112729272	112730057	brain_AmbionMAQC.17482	0	.	112729272	112730057	0	1	785	0
chr12	112729283	112729611	CD4_Plagnol_activated.25574	0	.	112729283	112729611	0	1	328	0
chr12	112733193	112734694	HeLa_polyA+_Chen.14710	0	.	112733193	112734694	0	1	1501	0
chr12	112733495	112734684	brain_AmbionMAQC.17486	0	.	112733495	112734684	0	1	1189	0
chr12	112737189	112737887	MDAMB231_Thompson.9023	0	.	112737189	112737887	0	1	698	0
chr12	113331639	113332440	IMR90_UCSD_REMC.20564	0	-	113331639	113332440	0	1	801	0
chr12	113336267	113336641	A549_Myers.31672	0	.	113336267	113336641	0	1	374	0
chr12	113396909	113400917	REMC_LuminalBreast.41654	0	.	113396909	113400917	0	1	4008	0
chr12	113607477	113614647	prostate_carcinoma.39773	0	-	113607477	113614647	0	2	929,270	0,6900
chr12	113607558	113608388	REMC_LuminalBreast.41678	0	.	113607558	113608388	0	1	830	0
chr12	113608020	113608365	kidney_Gilad.36088	0	.	113608020	113608365	0	1	345	0
chr12	113608020	113608401	liver_polyA+.55110	0	.	113608020	113608401	0	1	381	0
chr12	113613817	113614576	prostate_carcinoma.39774	0	.	113613817	113614576	0	1	759	0
chr12	113614193	113614610	prostate_normal.23411	0	.	113614193	113614610	0	1	417	0
chr12	113614737	113615504	prostate_normal.23412	0	.	113614737	113615504	0	1	767	0
chr12	113616581	113617709	prostate_normal.23414	0	.	113616581	113617709	0	1	1128	0
chr12	113619898	113622066	A549_Myers.31676	0	+	113619898	113622066	0	2	168,187	0,1981
chr12	113620749	113621282	BT474_Burge_Thompson.13291	0	.	113620749	113621282	0	1	533	0
chr12	113622183	113622941	BT474_Burge_Thompson.13292	0	.	113622183	113622941	0	1	758	0
chr12	113622677	113623185	A549_Myers.31677	0	.	113622677	113623185	0	1	508	0
chr12	113624307	113625661	prostate_carcinoma.39777	0	.	113624307	113625661	0	1	1354	0
chr12	113625620	113626410	MIP101.27306	0	.	113625620	113626410	0	1	790	0
chr12	113625868	113626507	prostate_carcinoma.39778	0	.	113625868	113626507	0	1	639	0
chr12	113625954	113626523	BT474_Burge_Thompson.13293	0	.	113625954	113626523	0	1	569	0
chr12	113628672	113629797	liver_polyA+.55111	0	-	113628672	113629797	0	2	53,288	0,837
chr12	113628673	113629797	kidney_Gilad.36090	0	-	113628673	113629797	0	2	52,288	0,836
chr12	113651026	113652454	prostate_carcinoma.39783	0	.	113651026	113652454	0	1	1428	0
chr12	113651032	113652662	MIP101.27308	0	.	113651032	113652662	0	1	1630	0
chr12	113651365	113652179	BT474_Burge_Thompson.13298	0	.	113651365	113652179	0	1	814	0
chr12	113655820	113656673	prostate_carcinoma.39790	0	.	113655820	113656673	0	1	853	0
chr12	113658137	113658631	BT474_Burge_Thompson.13301	0	.	113658137	113658631	0	1	494	0
chr12	113662700	113663649	prostate_carcinoma.39791	0	.	113662700	113663649	0	1	949	0
chr12	113664638	113665023	BT474_Burge_Thompson.13303	0	.	113664638	113665023	0	1	385	0
chr12	113668424	113669290	liver_polyA+.55120	0	.	113668424	113669290	0	1	866	0
chr12	113675017	113676356	MIP101.27310	0	.	113675017	113676356	0	1	1339	0
chr12	113684962	113685625	prostate_carcinoma.39796	0	.	113684962	113685625	0	1	663	0
chr12	113687704	113688727	prostate_carcinoma.39797	0	.	113687704	113688727	0	1	1023	0
chr12	113687919	113688760	BT474_Burge_Thompson.13314	0	.	113687919	113688760	0	1	841	0
chr12	113798870	113799776	prostate_carcinoma.39801	0	.	113798870	113799776	0	1	906	0
chr12	113826139	113826511	A549_Myers.31688	0	.	113826139	113826511	0	1	372	0
chr12	113855064	113858332	B_cells_Cheung.78600	0	.	113855064	113858332	0	1	3268	0
chr12	113868286	113869444	B_cells_Cheung.78602	0	.	113868286	113869444	0	1	1158	0
chr12	113874574	113875027	B_cells_Cheung.78603	0	.	113874574	113875027	0	1	453	0
chr12	113878327	113879494	B_cells_Cheung.78605	0	.	113878327	113879494	0	1	1167	0
chr12	113881545	113883720	B_cells_Cheung.78609	0	.	113881545	113883720	0	1	2175	0
chr12	113888960	113890114	B_cells_Cheung.78611	0	.	113888960	113890114	0	1	1154	0
chr12	113994290	114011639	HepG2_Caltech_ENCODE.14430	0	-	113994290	114011639	0	2	2779,279	0,17070
chr12	114225958	114243241	REMC_BreastStem.20994	0	-	114225958	114243241	0	4	196,185,104,220	0,6943,10413,17063
chr12	114232486	114243455	B_cells_Cheung.78639	0	-	114232486	114243455	0	3	600,104,434	0,3885,10535
chr12	114243989	114246049	REMC_BreastStem.20992	0	.	114243989	114246049	0	1	2060	0
chr12	114244409	114246341	REMC_MyoepithelialBreast.39108	0	.	114244409	114246341	0	1	1932	0
chr12	114269724	114270524	B_cells_Cheung.78648	0	.	114269724	114270524	0	1	800	0
chr12	114374430	114374737	A549_Myers.31696	0	.	114374430	114374737	0	1	307	0
chr12	114397286	114418061	pHIT000112252	0	-	114397286	114418061	0	5	165,58,72,13,121	0,3637,9105,19895,20654
chr12	114414100	114414572	prostate_carcinoma.39809	0	.	114414100	114414572	0	1	472	0
chr12	114543067	114543404	A549_Myers.31700	0	.	114543067	114543404	0	1	337	0
chr12	114579727	114580128	ZR751_Thompson.9834	0	.	114579727	114580128	0	1	401	0
chr12	114579730	114580129	BT474_Burge_Thompson.13224	0	.	114579730	114580129	0	1	399	0
chr12	114621183	114623369	prostate_carcinoma.39816	0	.	114621183	114623369	0	1	2186	0
chr12	114630196	114631100	prostate_carcinoma.39819	0	.	114630196	114631100	0	1	904	0
chr12	114635409	114635828	prostate_carcinoma.39822	0	.	114635409	114635828	0	1	419	0
chr12	114638442	114639121	prostate_carcinoma.39823	0	.	114638442	114639121	0	1	679	0
chr12	114663026	114664032	REMC_LuminalBreast.41668	0	.	114663026	114664032	0	1	1006	0
chr12	114664946	114665731	prostate_carcinoma.39827	0	.	114664946	114665731	0	1	785	0
chr12	114670774	114673562	prostate_carcinoma.39829	0	.	114670774	114673562	0	1	2788	0
chr12	114677166	114678009	prostate_carcinoma.39832	0	.	114677166	114678009	0	1	843	0
chr12	114677203	114678310	REMC_LuminalBreast.41672	0	.	114677203	114678310	0	1	1107	0
chr12	114687641	114690460	prostate_carcinoma.39837	0	.	114687641	114690460	0	1	2819	0
chr12	114688388	114690428	prostate_normal.23433	0	.	114688388	114690428	0	1	2040	0
chr12	114717715	114718025	A549_Myers.31702	0	.	114717715	114718025	0	1	310	0
chr12	114796761	114797805	REMC_LuminalBreast.41673	0	.	114796761	114797805	0	1	1044	0
chr12	114805400	114807206	REMC_LuminalBreast.41674	0	.	114805400	114807206	0	1	1806	0
chr12	114816223	114818696	REMC_MyoepithelialBreast.39111	0	.	114816223	114818696	0	1	2473	0
chr12	114833101	114835932	REMC_LuminalBreast.41792	0	.	114833101	114835932	0	1	2831	0
chr12	114833550	114835903	REMC_MyoepithelialBreast.39120	0	.	114833550	114835903	0	1	2353	0
chr12	114836083	114839351	REMC_LuminalBreast.41793	0	.	114836083	114839351	0	1	3268	0
chr12	114838989	114839668	A549_Myers.31705	0	.	114838989	114839668	0	1	679	0
chr12	114844210	114855157	REMC_LuminalBreast.41796	0	.	114844210	114855157	0	1	10947	0
chr12	114845353	114846842	REMC_MyoepithelialBreast.39126	0	.	114845353	114846842	0	1	1489	0
chr12	114846915	114849557	REMC_MyoepithelialBreast.39127	0	.	114846915	114849557	0	1	2642	0
chr12	114849642	114850906	REMC_MyoepithelialBreast.39128	0	.	114849642	114850906	0	1	1264	0
chr12	114851777	114852872	REMC_MyoepithelialBreast.39130	0	.	114851777	114852872	0	1	1095	0
chr12	114857145	114865117	REMC_MyoepithelialBreast.39134	0	.	114857145	114865117	0	1	7972	0
chr12	114858180	114860412	REMC_BreastStem.21212	0	.	114858180	114860412	0	1	2232	0
chr12	114863538	114865051	REMC_BreastStem.21215	0	.	114863538	114865051	0	1	1513	0
chr12	114865437	114866833	melanoma_Garraway_short_term_cultures.27243	0	.	114865437	114866833	0	1	1396	0
chr12	114870619	114871126	A549_Myers.31707	0	.	114870619	114871126	0	1	507	0
chr12	114870641	114873073	melanoma_Garraway_short_term_cultures.27244	0	.	114870641	114873073	0	1	2432	0
chr12	114871525	114873178	B_cells_Cheung.78661	0	.	114871525	114873178	0	1	1653	0
chr12	114872076	114873186	B_Cells_Pritchard.1358319	0	.	114872076	114873186	0	1	1110	0
chr12	114874154	114875941	B_cells_Cheung.78663	0	.	114874154	114875941	0	1	1787	0
chr12	114874196	114875249	H1_polyA+.46116	0	.	114874196	114875249	0	1	1053	0
chr12	114874202	114877788	melanoma_Garraway_short_term_cultures.27245	0	.	114874202	114877788	0	1	3586	0
chr12	114874314	114875499	CD4_Plagnol_activated.25607	0	.	114874314	114875499	0	1	1185	0
chr12	114874314	114875242	B_Cells_Pritchard.1358323	0	.	114874314	114875242	0	1	928	0
chr12	114874864	114875213	T47D_Burge_Thompson.11576	0	.	114874864	114875213	0	1	349	0
chr12	115221957	115242091	pHIT000085321	0	-	115221957	115242091	0	4	62,113,100,76	0,4488,16194,20058
chr12	115297162	115298123	A549_Myers.31723	0	.	115297162	115298123	0	1	961	0
chr12	115304719	115305078	IMR90_UCSD_REMC.20596	0	+	115304719	115305078	0	1	359	0
chr12	115311559	115311942	A549_Myers.31730	0	.	115311559	115311942	0	1	383	0
chr12	115337106	115338022	A549_Myers.31732	0	.	115337106	115338022	0	1	916	0
chr12	115337771	115338210	BT474_Burge_Thompson.13230	0	.	115337771	115338210	0	1	439	0
chr12	115376686	115379898	REMC_MyoepithelialBreast.39173	0	.	115376686	115379898	0	1	3212	0
chr12	115376838	115378253	REMC_BreastStem.20997	0	.	115376838	115378253	0	1	1415	0
chr12	115377061	115379261	REMC_LuminalBreast.41690	0	.	115377061	115379261	0	1	2200	0
chr12	115430725	115431448	REMC_MyoepithelialBreast.39177	0	.	115430725	115431448	0	1	723	0
chr12	115439852	115444159	REMC_MyoepithelialBreast.39179	0	.	115439852	115444159	0	1	4307	0
chr12	115440917	115441586	B_cells_Cheung.78813	0	.	115440917	115441586	0	1	669	0
chr12	115442468	115443881	B_cells_Cheung.78815	0	.	115442468	115443881	0	1	1413	0
chr12	115444403	115445553	REMC_MyoepithelialBreast.39180	0	.	115444403	115445553	0	1	1150	0
chr12	115446456	115449094	REMC_MyoepithelialBreast.39182	0	.	115446456	115449094	0	1	2638	0
chr12	115446458	115447574	B_cells_Cheung.78818	0	.	115446458	115447574	0	1	1116	0
chr12	115446562	115447622	REMC_BreastStem.20998	0	.	115446562	115447622	0	1	1060	0
chr12	115446563	115448225	REMC_LuminalBreast.41691	0	.	115446563	115448225	0	1	1662	0
chr12	115447658	115448244	B_cells_Cheung.78819	0	.	115447658	115448244	0	1	586	0
chr12	115450397	115451352	REMC_MyoepithelialBreast.39184	0	.	115450397	115451352	0	1	955	0
chr12	115455123	115456142	A549_Myers.31752	0	.	115455123	115456142	0	1	1019	0
chr12	115455627	115455929	MCF7_Burge_Thompson.12006	0	.	115455627	115455929	0	1	302	0
chr12	115459020	115463310	H1_polyA+.45958	0	.	115459020	115463310	0	1	4290	0
chr12	115459252	115460220	MCF7_Burge_Thompson.12011	0	.	115459252	115460220	0	1	968	0
chr12	115459295	115459893	K562.18521	0	.	115459295	115459893	0	1	598	0
chr12	115459610	115463496	REMC_MyoepithelialBreast.39187	0	.	115459610	115463496	0	1	3886	0
chr12	115460706	115461544	NEC_from_H9.30315	0	.	115460706	115461544	0	1	838	0
chr12	115460744	115461460	prostate_normal.23453	0	.	115460744	115461460	0	1	716	0
chr12	115461540	115472963	REMC_LuminalBreast.41694	0	+	115461540	115472963	0	3	781,184,405	0,8752,11018
chr12	115461676	115472979	T47D_Burge_Thompson.11586	0	+	115461676	115472979	0	3	645,306,421	0,8494,10882
chr12	115462017	115470478	K562.18522	0	+	115462017	115470478	0	2	304,186	0,8275
chr12	115464130	115465487	H1_polyA+.45960	0	.	115464130	115465487	0	1	1357	0
chr12	115474129	115475418	B_Cells_Pritchard.1360261	0	.	115474129	115475418	0	1	1289	0
chr12	115474515	115475453	B_cells_Cheung.78829	0	.	115474515	115475453	0	1	938	0
chr12	115474795	115475127	A549_Myers.31755	0	.	115474795	115475127	0	1	332	0
chr12	115475341	115476153	H1_polyA+.45966	0	.	115475341	115476153	0	1	812	0
chr12	115475556	115476177	B_Cells_Pritchard.1360263	0	.	115475556	115476177	0	1	621	0
chr12	115503161	115505860	HIT000011698	0	+	115503161	115505860	0	1	2699	0
chr12	115525509	115526366	prostate_carcinoma.39902	0	.	115525509	115526366	0	1	857	0
chr12	115525697	115526229	T47D_Burge_Thompson.11596	0	.	115525697	115526229	0	1	532	0
chr12	115525711	115526207	prostate_normal.23457	0	.	115525711	115526207	0	1	496	0
chr12	115577255	115579661	T47D_Burge_Thompson.11597	0	.	115577255	115579661	0	1	2406	0
chr12	115583404	115585162	T47D_Burge_Thompson.11602	0	.	115583404	115585162	0	1	1758	0
chr12	115583404	115585162	T47D_Burge_Thompson.11600	0	+	115583404	115585162	0	2	420,1236	0,522
chr12	115583718	115620654	H1_polyA+.45970	0	+	115583718	115620654	0	2	682,612	0,36324
chr12	115583718	115584463	H1_polyA+.45971	0	.	115583718	115584463	0	1	745	0
chr12	115583722	115584279	K562.18536	0	.	115583722	115584279	0	1	557	0
chr12	115584744	115585235	A549_Myers.31761	0	.	115584744	115585235	0	1	491	0
chr12	115616145	115616586	BT474_Burge_Thompson.13624	0	.	115616145	115616586	0	1	441	0
chr12	115621762	115628701	BT474_Burge_Thompson.13607	0	.	115621762	115628701	0	1	6939	0
chr12	115633635	115636871	CD4_Plagnol_resting.24824	0	.	115633635	115636871	0	1	3236	0
chr12	115633658	115636898	B_cells_Cheung.78846	0	.	115633658	115636898	0	1	3240	0
chr12	115633670	115636857	melanoma_Garraway_short_term_cultures.27273	0	.	115633670	115636857	0	1	3187	0
chr12	115633697	115636869	CD4_Plagnol_activated.25642	0	.	115633697	115636869	0	1	3172	0
chr12	115633712	115636870	MCF7_Burge_Thompson.12035	0	.	115633712	115636870	0	1	3158	0
chr12	115634015	115636869	MCF10A_Thompson.8858	0	.	115634015	115636869	0	1	2854	0
chr12	115634115	115636782	MeWo_Garraway.14366	0	.	115634115	115636782	0	1	2667	0
chr12	115634331	115636877	brain_AmbionMAQC.17528	0	.	115634331	115636877	0	1	2546	0
chr12	115634403	115636869	MDAMB468_Thompson.10086	0	.	115634403	115636869	0	1	2466	0
chr12	115634468	115636869	BT20_Thompson.8640	0	.	115634468	115636869	0	1	2401	0
chr12	115634843	115636882	MDAMB231_Thompson.9034	0	.	115634843	115636882	0	1	2039	0
chr12	115635156	115636782	NEC_from_H9.30330	0	.	115635156	115636782	0	1	1626	0
chr12	115778287	115780117	H1_polyA+.46060	0	.	115778287	115780117	0	1	1830	0
chr12	115778288	115779991	BT474_Burge_Thompson.13234	0	.	115778288	115779991	0	1	1703	0
chr12	115778325	115778973	B_Cells_Pritchard.1361097	0	-	115778325	115778973	0	1	648	0
chr12	115778327	115780104	REMC_LuminalBreast.41710	0	.	115778327	115780104	0	1	1777	0
chr12	115778329	115779967	melanoma_Garraway_short_term_cultures.27291	0	.	115778329	115779967	0	1	1638	0
chr12	115778332	115780352	HIT000019585	0	-	115778332	115780352	0	1	2020	0
chr12	115778337	115779827	MCF7_Burge_Thompson.12030	0	.	115778337	115779827	0	1	1490	0
chr12	115778338	115779497	MDAMB468_Thompson.10082	0	.	115778338	115779497	0	1	1159	0
chr12	115778338	115779992	brain_AmbionMAQC.17546	0	.	115778338	115779992	0	1	1654	0
chr12	115778347	115779973	NEC_from_H9.30341	0	.	115778347	115779973	0	1	1626	0
chr12	115778385	115779991	BT20_Thompson.8645	0	.	115778385	115779991	0	1	1606	0
chr12	115778388	115779817	MCF10A_Thompson.8854	0	.	115778388	115779817	0	1	1429	0
chr12	115778457	115779472	HeLa_polyA+_Chen.14756	0	.	115778457	115779472	0	1	1015	0
chr12	115780219	115780750	HeLa_polyA+_Chen.14757	0	.	115780219	115780750	0	1	531	0
chr12	115780243	115780994	MCF7_Burge_Thompson.12031	0	.	115780243	115780994	0	1	751	0
chr12	115780244	115780771	B_cells_Cheung.78910	0	.	115780244	115780771	0	1	527	0
chr12	115780251	115782069	MeI_Garraway.7261	0	.	115780251	115782069	0	1	1818	0
chr12	115780256	115780748	NEC_from_H9.30342	0	.	115780256	115780748	0	1	492	0
chr12	115780818	115781728	H9_polyA+.18209	0	.	115780818	115781728	0	1	910	0
chr12	115780835	115782003	HeLa_polyA+_Chen.14759	0	.	115780835	115782003	0	1	1168	0
chr12	116024123	116024671	B_Cells_Pritchard.1361673	0	.	116024123	116024671	0	1	548	0
chr12	116024361	116025236	prostate_carcinoma.39952	0	.	116024361	116025236	0	1	875	0
chr12	116024713	116025236	B_cells_Cheung.78956	0	.	116024713	116025236	0	1	523	0
chr12	116024795	116025253	H1_polyA+.46072	0	.	116024795	116025253	0	1	458	0
chr12	116024802	116025214	MIP101.27419	0	.	116024802	116025214	0	1	412	0
chr12	116036025	116036529	REMC_BreastStem.21009	0	.	116036025	116036529	0	1	504	0
chr12	116041370	116043334	B_cells_Cheung.78964	0	.	116041370	116043334	0	1	1964	0
chr12	116041524	116042023	A549_Myers.31814	0	.	116041524	116042023	0	1	499	0
chr12	116045098	116046272	REMC_LuminalBreast.41716	0	.	116045098	116046272	0	1	1174	0
chr12	116045565	116046834	B_cells_Cheung.78966	0	.	116045565	116046834	0	1	1269	0
chr12	116045853	116046603	REMC_MyoepithelialBreast.39211	0	.	116045853	116046603	0	1	750	0
chr12	116046419	116051465	REMC_LuminalBreast.41717	0	.	116046419	116051465	0	1	5046	0
chr12	116046716	116047793	REMC_MyoepithelialBreast.39212	0	.	116046716	116047793	0	1	1077	0
chr12	116049280	116051459	B_cells_Cheung.78969	0	.	116049280	116051459	0	1	2179	0
chr12	116049572	116050803	A549_Myers.31818	0	.	116049572	116050803	0	1	1231	0
chr12	116050896	116051315	A549_Myers.31819	0	.	116050896	116051315	0	1	419	0
chr12	116055753	116057278	REMC_LuminalBreast.41719	0	.	116055753	116057278	0	1	1525	0
chr12	116055769	116057638	B_cells_Cheung.78976	0	.	116055769	116057638	0	1	1869	0
chr12	116055774	116056769	REMC_MyoepithelialBreast.39216	0	.	116055774	116056769	0	1	995	0
chr12	116055795	116056666	REMC_BreastStem.21014	0	.	116055795	116056666	0	1	871	0
chr12	116059432	116060688	REMC_MyoepithelialBreast.39217	0	.	116059432	116060688	0	1	1256	0
chr12	116060854	116064443	A549_Myers.31820	0	-	116060854	116064443	0	2	109,982	0,2607
chr12	116061666	116062013	B_Cells_Pritchard.1361781	0	.	116061666	116062013	0	1	347	0
chr12	116062200	116062674	B_Cells_Pritchard.1361783	0	.	116062200	116062674	0	1	474	0
chr12	116062318	116062670	B_cells_Cheung.78981	0	.	116062318	116062670	0	1	352	0
chr12	116062948	116064443	A549_Myers.31821	0	.	116062948	116064443	0	1	1495	0
chr12	116063258	116063876	REMC_BreastStem.21018	0	.	116063258	116063876	0	1	618	0
chr12	116064176	116064854	liver_polyA+.55253	0	.	116064176	116064854	0	1	678	0
chr12	116064264	116064835	K562.18555	0	.	116064264	116064835	0	1	571	0
chr12	117031343	117032292	HepG2_Caltech_ENCODE.14486	0	.	117031343	117032292	0	1	949	0
chr12	117031377	117033018	B_Cells_Pritchard.1364387	0	+	117031377	117033018	0	3	381,153,276	0,1212,1365
chr12	117036862	117043722	Rinn_00020940	0	-	117036862	117043722	0	2	3208,35	0,6825
chr12	117038000	117039600	K562.18560	0	.	117038000	117039600	0	1	1600	0
chr12	117038000	117048845	Rinn_00020941	0	-	117038000	117048845	0	2	2070,178	0,10667
chr12	117038045	117039603	ZR751_Thompson.9858	0	.	117038045	117039603	0	1	1558	0
chr12	117038862	117048949	T47D_Burge_Thompson.11642	0	-	117038862	117048949	0	2	1208,281	0,9806
chr12	117038983	117039694	MDAMB231_Thompson.9050	0	.	117038983	117039694	0	1	711	0
chr12	117039134	117040072	REMC_LuminalBreast.41734	0	.	117039134	117040072	0	1	938	0
chr12	117039192	117040080	melanoma_Garraway_short_term_cultures.27344	0	.	117039192	117040080	0	1	888	0
chr12	117039310	117043410	Rinn_00021412	0	-	117039310	117043410	0	2	760,191	0,3909
chr12	117044528	117045254	B_cells_Cheung.79067	0	.	117044528	117045254	0	2	175,359	0,367
chr12	117045406	117046231	B_cells_Cheung.79068	0	.	117045406	117046231	0	1	825	0
chr12	117048450	117048949	T47D_Burge_Thompson.11643	0	.	117048450	117048949	0	1	499	0
chr12	117048543	117048862	prostate_normal.23606	0	.	117048543	117048862	0	1	319	0
chr12	117051533	117052480	H1_polyA+.46868	0	.	117051533	117052480	0	1	947	0
chr12	117053550	117055622	B_cells_Cheung.79073	0	.	117053550	117055622	0	1	2072	0
chr12	117053567	117055562	H1_polyA+.46871	0	.	117053567	117055562	0	1	1995	0
chr12	117344012	117353026	REMC_BreastStem.21071	0	.	117344012	117353026	0	1	9014	0
chr12	117344088	117344529	brain_AmbionMAQC.17586	0	.	117344088	117344529	0	1	441	0
chr12	117344126	117344523	B_cells_Cheung.79204	0	.	117344126	117344523	0	1	397	0
chr12	117345034	117353925	REMC_MyoepithelialBreast.39288	0	.	117345034	117353925	0	1	8891	0
chr12	117349620	117351463	B_cells_Cheung.79211	0	.	117349620	117351463	0	1	1843	0
chr12	117349679	117351252	CD4_Plagnol_resting.24925	0	.	117349679	117351252	0	1	1573	0
chr12	117349685	117351649	CD4_Plagnol_activated.25685	0	.	117349685	117351649	0	1	1964	0
chr12	117349699	117351816	melanoma_Garraway_short_term_cultures.27396	0	.	117349699	117351816	0	1	2117	0
chr12	117357107	117359647	REMC_BreastStem.21073	0	.	117357107	117359647	0	1	2540	0
chr12	117357966	117359712	REMC_MyoepithelialBreast.39292	0	.	117357966	117359712	0	1	1746	0
chr12	117358299	117360430	prostate_carcinoma.40099	0	.	117358299	117360430	0	1	2131	0
chr12	117358463	117360058	MIP101.27586	0	.	117358463	117360058	0	1	1595	0
chr12	117359763	117363527	REMC_MyoepithelialBreast.39293	0	.	117359763	117363527	0	1	3764	0
chr12	117359877	117361705	REMC_BreastStem.21074	0	.	117359877	117361705	0	1	1828	0
chr12	117360515	117361025	B_cells_Cheung.79214	0	.	117360515	117361025	0	1	510	0
chr12	117364433	117367365	REMC_LuminalBreast.41766	0	.	117364433	117367365	0	1	2932	0
chr12	117365265	117366339	REMC_BreastStem.21076	0	.	117365265	117366339	0	1	1074	0
chr12	117367435	117368473	REMC_LuminalBreast.41767	0	.	117367435	117368473	0	1	1038	0
chr12	117367798	117369028	REMC_MyoepithelialBreast.39295	0	.	117367798	117369028	0	1	1230	0
chr12	117370624	117371444	REMC_MyoepithelialBreast.39297	0	.	117370624	117371444	0	1	820	0
chr12	117485067	117485474	B_Cells_Pritchard.1365713	0	.	117485067	117485474	0	1	407	0
chr12	117497693	117498912	B_Cells_Pritchard.1365755	0	.	117497693	117498912	0	1	1219	0
chr12	117629854	117630243	BT474_Burge_Thompson.13287	0	.	117629854	117630243	0	1	389	0
chr12	117875575	117878313	Rinn_00020947	0	-	117875575	117878313	0	2	40,321	0,2417
chr12	117876958	117877802	Rinn_00020948	0	-	117876958	117877802	0	2	344,33	0,811
chr12	117876958	117878278	Rinn_00020949	0	-	117876958	117878278	0	2	344,286	0,1034
chr12	118093692	118096774	Rinn_00020591	0	+	118093692	118096774	0	3	72,73,226	0,2421,2856
chr12	118120877	118122071	REMC_LuminalBreast.41782	0	.	118120877	118122071	0	1	1194	0
chr12	118124621	118127826	REMC_MyoepithelialBreast.39378	0	.	118124621	118127826	0	1	3205	0
chr12	118473259	118474217	prostate_carcinoma.40128	0	.	118473259	118474217	0	1	958	0
chr12	119045079	119046950	REMC_LuminalBreast.41903	0	.	119045079	119046950	0	1	1871	0
chr12	119045237	119045956	B_cells_Cheung.79375	0	.	119045237	119045956	0	1	719	0
chr12	119045346	119045969	CD4_Plagnol_activated.25710	0	.	119045346	119045969	0	1	623	0
chr12	119199907	119201320	HIT000075197	0	-	119199907	119201320	0	1	1413	0
chr12	119200946	119201900	REMC_BreastStem.21103	0	.	119200946	119201900	0	1	954	0
chr12	119202061	119203862	REMC_LuminalBreast.41934	0	.	119202061	119203862	0	1	1801	0
chr12	119207298	119208819	REMC_LuminalBreast.41936	0	.	119207298	119208819	0	1	1521	0
chr12	119208972	119210027	REMC_MyoepithelialBreast.39384	0	.	119208972	119210027	0	1	1055	0
chr12	119209015	119210107	REMC_LuminalBreast.41937	0	.	119209015	119210107	0	1	1092	0
chr12	119258438	119259181	REMC_MyoepithelialBreast.39504	0	.	119258438	119259181	0	1	743	0
chr12	119291625	119293874	ENST00000477404	0	+	119291625	119293874	0	3	86,111,287	0,1639,1962
chr12	119293540	119293852	B_cells_Cheung.79449	0	.	119293540	119293852	0	1	312	0
chr12	119306124	119313316	B_Cells_Pritchard.1370133	0	+	119306124	119313316	0	2	8,367	0,6825
chr12	119312775	119313226	BT474_Burge_Thompson.13332	0	.	119312775	119313226	0	1	451	0
chr12	119422050	119424063	REMC_LuminalBreast.42046	0	.	119422050	119424063	0	1	2013	0
chr12	119505233	119506501	REMC_MyoepithelialBreast.39557	0	.	119505233	119506501	0	1	1268	0
chr12	119506669	119507457	B_cells_Cheung.79557	0	.	119506669	119507457	0	1	788	0
chr12	119506896	119507277	A549_Myers.32098	0	.	119506896	119507277	0	1	381	0
chr12	119510270	119512577	REMC_LuminalBreast.42063	0	.	119510270	119512577	0	1	2307	0
chr12	119510458	119511531	REMC_BreastStem.21132	0	.	119510458	119511531	0	1	1073	0
chr12	119510502	119512006	REMC_MyoepithelialBreast.39543	0	.	119510502	119512006	0	1	1504	0
chr12	119511072	119511555	A549_Myers.32099	0	.	119511072	119511555	0	1	483	0
chr12	119511596	119512665	REMC_BreastStem.21133	0	.	119511596	119512665	0	1	1069	0
chr12	119514000	119515462	REMC_BreastStem.21134	0	.	119514000	119515462	0	1	1462	0
chr12	119517779	119518708	REMC_BreastStem.21136	0	.	119517779	119518708	0	1	929	0
chr12	119518783	119523061	REMC_BreastStem.21137	0	.	119518783	119523061	0	1	4278	0
chr12	119519120	119523100	REMC_LuminalBreast.42066	0	.	119519120	119523100	0	1	3980	0
chr12	119519593	119521303	REMC_MyoepithelialBreast.39546	0	.	119519593	119521303	0	1	1710	0
chr12	119530765	119531536	REMC_BreastStem.21139	0	.	119530765	119531536	0	1	771	0
chr12	119531611	119532811	REMC_BreastStem.21140	0	.	119531611	119532811	0	1	1200	0
chr12	119534005	119535561	REMC_BreastStem.21141	0	.	119534005	119535561	0	1	1556	0
chr12	119534302	119535144	REMC_LuminalBreast.42067	0	.	119534302	119535144	0	1	842	0
chr12	119551864	119562686	H9_polyA+.18398	0	-	119551864	119562686	0	2	818,451	0,10371
chr12	119554138	119554604	H1_polyA+.46488	0	.	119554138	119554604	0	1	466	0
chr12	119981512	119982177	B_Cells_Pritchard.1371517	0	.	119981512	119982177	0	1	665	0
chr12	119981632	119982038	B_cells_Cheung.79619	0	.	119981632	119982038	0	1	406	0
chr12	120001926	120002389	BT474_Burge_Thompson.13387	0	.	120001926	120002389	0	1	463	0
chr12	120049791	120050482	B_cells_Cheung.79622	0	.	120049791	120050482	0	1	691	0
chr12	120050093	120050864	B_Cells_Pritchard.1371749	0	.	120050093	120050864	0	1	771	0
chr12	120052445	120052961	CD4_Plagnol_activated.25798	0	.	120052445	120052961	0	1	516	0
chr12	120111460	120112251	liver_polyA+.55817	0	.	120111460	120112251	0	1	791	0
chr12	120111460	120111947	kidney_Gilad.36531	0	.	120111460	120111947	0	1	487	0
chr12	120112581	120113400	melanoma_Garraway_short_term_cultures.27568	0	.	120112581	120113400	0	1	819	0
chr12	120124716	120125990	REMC_LuminalBreast.42130	0	.	120124716	120125990	0	1	1274	0
chr12	120124801	120126012	REMC_BreastStem.21161	0	.	120124801	120126012	0	1	1211	0
chr12	120130324	120131016	B_Cells_Pritchard.1371891	0	.	120130324	120131016	0	1	692	0
chr12	120504939	120505278	prostate_carcinoma.40462	0	.	120504939	120505278	0	1	339	0
chr12	120506191	120508274	H9_polyA+.18478	0	.	120506191	120508274	0	1	2083	0
chr12	120506191	120512623	H9_polyA+.18479	0	+	120506191	120512623	0	2	1925,80	0,6352
chr12	120507608	120513659	liver_polyA+.55929	0	+	120507608	120513659	0	4	86,91,73,70	0,2984,4381,5981
chr12	120507608	120513659	kidney_Gilad.36598	0	+	120507608	120513659	0	4	86,91,73,70	0,2984,4381,5981
chr12	120509659	120511373	H1_polyA+.46769	0	.	120509659	120511373	0	1	1714	0
chr12	120512002	120514294	CD4_Plagnol_resting.26722	0	.	120512002	120514294	0	1	2292	0
chr12	120514445	120520109	B_Cells_Pritchard.1372881	0	+	120514445	120520109	0	4	795,115,908,507	0,1275,3266,5157
chr12	120517708	120519423	B_cells_Cheung.79745	0	+	120517708	120519423	0	2	341,1222	0,493
chr12	120517708	120519423	B_cells_Cheung.79746	0	.	120517708	120519423	0	1	1715	0
chr12	120517789	120519363	CD4_Plagnol_activated.26691	0	.	120517789	120519363	0	1	1574	0
chr12	120517793	120519110	melanoma_Garraway_short_term_cultures.27648	0	.	120517793	120519110	0	1	1317	0
chr12	120517841	120519970	H9_polyA+.18485	0	.	120517841	120519970	0	1	2129	0
chr12	120518215	120519090	HepG2_Caltech_ENCODE.14581	0	.	120518215	120519090	0	1	875	0
chr12	120520220	120521755	B_cells_Cheung.79748	0	.	120520220	120521755	0	1	1535	0
chr12	120520360	120521233	HepG2_Caltech_ENCODE.14582	0	.	120520360	120521233	0	1	873	0
chr12	120520385	120520835	H1_rRNA-depleted_UCSD_REMC.36475	0	.	120520385	120520835	0	1	450	0
chr12	120520393	120521776	REMC_LuminalBreast.42157	0	.	120520393	120521776	0	1	1383	0
chr12	120520413	120520974	HeLa_polyA+_Chen.14933	0	.	120520413	120520974	0	1	561	0
chr12	120520474	120521306	brain_AmbionMAQC.17758	0	.	120520474	120521306	0	1	832	0
chr12	120520481	120521751	CD4_Plagnol_activated.26693	0	.	120520481	120521751	0	1	1270	0
chr12	120520482	120521273	NEC_from_H9.30809	0	.	120520482	120521273	0	1	791	0
chr12	120520487	120521731	melanoma_Garraway_short_term_cultures.27650	0	.	120520487	120521731	0	1	1244	0
chr12	120520492	120521737	MIP101.27837	0	.	120520492	120521737	0	1	1245	0
chr12	120520509	120521680	BT474_Burge_Thompson.13393	0	.	120520509	120521680	0	1	1171	0
chr12	120520536	120521730	B_Cells_Pritchard.1372901	0	-	120520536	120521730	0	3	353,157,366	0,515,828
chr12	120520540	120522767	prostate_carcinoma.40463	0	-	120520540	120522767	0	2	1238,62	0,2165
chr12	120520545	120521731	H9_polyA+.18486	0	.	120520545	120521731	0	2	344,785	0,401
chr12	120520547	120521475	prostate_normal.23740	0	.	120520547	120521475	0	1	928	0
chr12	120521024	120521706	HeLa_polyA+_Chen.14934	0	.	120521024	120521706	0	1	682	0
chr12	120521306	120521755	brain_AmbionMAQC.17759	0	.	120521306	120521755	0	1	449	0
chr12	120521342	120522524	NEC_from_H9.30810	0	-	120521342	120522524	0	2	394,116	0,1066
chr12	120521370	120521725	K562.18692	0	.	120521370	120521725	0	1	355	0
chr12	120521860	120525599	B_Cells_Pritchard.1372903	0	+	120521860	120525599	0	2	71,985	0,2754
chr12	120522392	120523837	H1_polyA+.46773	0	.	120522392	120523837	0	1	1445	0
chr12	120522425	120523838	B_cells_Cheung.79750	0	.	120522425	120523838	0	1	1413	0
chr12	120522633	120523789	H9_polyA+.18487	0	.	120522633	120523789	0	1	1156	0
chr12	120522704	120523841	CD4_Plagnol_activated.26696	0	.	120522704	120523841	0	1	1137	0
chr12	120522717	120523814	melanoma_Garraway_short_term_cultures.27652	0	.	120522717	120523814	0	1	1097	0
chr12	120522922	120523780	MIP101.27835	0	.	120522922	120523780	0	1	858	0
chr12	120523452	120523825	brain_AmbionMAQC.17762	0	.	120523452	120523825	0	1	373	0
chr12	120524344	120525679	B_cells_Cheung.79751	0	.	120524344	120525679	0	1	1335	0
chr12	120524464	120525556	CD4_Plagnol_activated.26697	0	.	120524464	120525556	0	1	1092	0
chr12	120524486	120524796	melanoma_Garraway_short_term_cultures.27653	0	.	120524486	120524796	0	1	310	0
chr12	120524897	120525437	melanoma_Garraway_short_term_cultures.27654	0	.	120524897	120525437	0	1	540	0
chr12	120532371	120534561	CD4_Plagnol_activated.26704	0	.	120532371	120534561	0	1	2190	0
chr12	120532409	120533363	REMC_BreastStem.21176	0	.	120532409	120533363	0	1	954	0
chr12	120532916	120534544	CD4_Plagnol_resting.26732	0	.	120532916	120534544	0	1	1628	0
chr12	120533388	120534591	B_cells_Cheung.79759	0	.	120533388	120534591	0	1	1203	0
chr12	120533394	120537900	B_Cells_Pritchard.1372937	0	+	120533394	120537900	0	2	589,215	0,4291
chr12	120533413	120534549	H1_polyA+.46673	0	.	120533413	120534549	0	1	1136	0
chr12	120533796	120534223	BT474_Burge_Thompson.13395	0	.	120533796	120534223	0	1	427	0
chr12	120533875	120534540	REMC_LuminalBreast.42159	0	.	120533875	120534540	0	1	665	0
chr12	120535516	120536159	B_cells_Cheung.79761	0	.	120535516	120536159	0	1	643	0
chr12	120536587	120537351	CD4_Plagnol_resting.26736	0	.	120536587	120537351	0	1	764	0
chr12	120538145	120544830	B_Cells_Pritchard.1372941	0	+	120538145	120544830	0	3	151,315,313	0,5751,6372
chr12	120538148	120538696	CD4_Plagnol_resting.26733	0	.	120538148	120538696	0	1	548	0
chr12	120538171	120538822	CD4_Plagnol_activated.26708	0	.	120538171	120538822	0	1	651	0
chr12	120538178	120538729	B_cells_Cheung.79764	0	.	120538178	120538729	0	1	551	0
chr12	120540889	120541675	H1_polyA+.46676	0	.	120540889	120541675	0	1	786	0
chr12	120544977	120546040	B_Cells_Pritchard.1372963	0	+	120544977	120546040	0	1	1063	0
chr12	120545218	120546233	B_cells_Cheung.79774	0	.	120545218	120546233	0	1	1015	0
chr12	120545223	120546141	CD4_Plagnol_activated.26714	0	.	120545223	120546141	0	1	918	0
chr12	120546951	120547805	H1_polyA+.46679	0	.	120546951	120547805	0	1	854	0
chr12	120547002	120547799	B_cells_Cheung.79776	0	.	120547002	120547799	0	1	797	0
chr12	120565920	120566581	H1_polyA+.46688	0	.	120565920	120566581	0	1	661	0
chr12	120568026	120568419	B_cells_Cheung.79799	0	.	120568026	120568419	0	1	393	0
chr12	120595000	120596019	K562.18701	0	.	120595000	120596019	0	1	1019	0
chr12	120595179	120596018	H1_polyA+.46701	0	.	120595179	120596018	0	1	839	0
chr12	120595480	120595797	A549_Myers.32211	0	.	120595480	120595797	0	1	317	0
chr12	120596880	120597709	B_cells_Cheung.79820	0	.	120596880	120597709	0	1	829	0
chr12	120599827	120602409	B_cells_Cheung.79822	0	.	120599827	120602409	0	1	2582	0
chr12	120600271	120602211	B_Cells_Pritchard.1373087	0	+	120600271	120602211	0	1	1940	0
chr12	120602684	120603744	B_cells_Cheung.79823	0	.	120602684	120603744	0	1	1060	0
chr12	120607890	120610033	B_cells_Cheung.79827	0	.	120607890	120610033	0	1	2143	0
chr12	120612411	120613088	B_cells_Cheung.79828	0	.	120612411	120613088	0	1	677	0
chr12	120613239	120613964	B_Cells_Pritchard.1373125	0	+	120613239	120613964	0	1	725	0
chr12	120613245	120613973	B_cells_Cheung.79829	0	.	120613245	120613973	0	1	728	0
chr12	120613266	120613975	H1_polyA+.46702	0	.	120613266	120613975	0	1	709	0
chr12	120616251	120616963	K562.18705	0	.	120616251	120616963	0	1	712	0
chr12	120624578	120625044	B_cells_Cheung.79840	0	.	120624578	120625044	0	1	466	0
chr12	120625268	120625668	B_cells_Cheung.79841	0	.	120625268	120625668	0	1	400	0
chr12	120625518	120626156	REMC_BreastStem.21181	0	.	120625518	120626156	0	1	638	0
chr12	120629960	120630460	B_cells_Cheung.79844	0	.	120629960	120630460	0	1	500	0
chr12	120719234	120721974	HeLa_polyA+_Chen.14949	0	.	120719234	120721974	0	1	2740	0
chr12	120719241	120722302	melanoma_Garraway_short_term_cultures.27686	0	.	120719241	120722302	0	1	3061	0
chr12	120719243	120721975	MCF10A_Thompson.8972	0	.	120719243	120721975	0	1	2732	0
chr12	120719249	120724287	CD4_Snyder.31520	0	+	120719249	120724287	0	2	2774,1246	0,3792
chr12	120719254	120721145	MeWo_Garraway.14525	0	.	120719254	120721145	0	1	1891	0
chr12	120719256	120724630	brain_AmbionMAQC.17963	0	-	120719256	120724630	0	2	2989,635	0,4739
chr12	120719260	120721928	BT20_Thompson.8740	0	.	120719260	120721928	0	1	2668	0
chr12	120719323	120725882	NEC_from_H9.30833	0	+	120719323	120725882	0	2	2695,2688	0,3871
chr12	120719328	120722751	liver_polyA+.55958	0	+	120719328	120722751	0	2	2354,747	0,2676
chr12	120719328	120722002	liver_polyA+.55959	0	.	120719328	120722002	0	1	2674	0
chr12	120719352	120722657	lymph_node_Burge.20133	0	.	120719352	120722657	0	1	3305	0
chr12	120719364	120722340	K562.18735	0	-	120719364	120722340	0	2	2582,205	0,2771
chr12	120719476	120719933	H1_rRNA-depleted_UCSD_REMC.36507	0	.	120719476	120719933	0	1	457	0
chr12	120719484	120720027	H9_polyA-_Chen.5915	0	.	120719484	120720027	0	1	543	0
chr12	120719487	120722302	melanoma_Garraway_short_term_cultures.27687	0	-	120719487	120722302	0	2	2459,167	0,2648
chr12	120719488	120720152	MDAMB231_Thompson.9144	0	.	120719488	120720152	0	1	664	0
chr12	120720091	120720704	H9_polyA-_Chen.5916	0	.	120720091	120720704	0	1	613	0
chr12	120720228	120721385	MDAMB231_Thompson.9145	0	.	120720228	120721385	0	1	1157	0
chr12	120720306	120720664	kidney_Gilad.36612	0	.	120720306	120720664	0	1	358	0
chr12	120720313	120720954	testes_Burge.21506	0	.	120720313	120720954	0	1	641	0
chr12	120722025	120722445	HME_Burge.16756	0	.	120722025	120722445	0	1	420	0
chr12	120722027	120725523	BT20_Thompson.8741	0	.	120722027	120725523	0	1	3496	0
chr12	120722034	120722434	MB435_Burge.17408	0	.	120722034	120722434	0	1	400	0
chr12	120722036	120722555	HeLa_polyA-_Chen.7915	0	.	120722036	120722555	0	1	519	0
chr12	120722049	120722399	NEC_from_H9.30834	0	.	120722049	120722399	0	1	350	0
chr12	120722133	120722961	H9_polyA-_Chen.5918	0	.	120722133	120722961	0	1	828	0
chr12	120722850	120723705	liver_polyA+.55956	0	.	120722850	120723705	0	1	855	0
chr12	120722859	120723410	HME_Burge.16757	0	.	120722859	120723410	0	1	551	0
chr12	120722991	120724314	testes_Burge.21508	0	.	120722991	120724314	0	1	1323	0
chr12	120722999	120723963	MCF10A_Thompson.8973	0	.	120722999	120723963	0	1	964	0
chr12	120723044	120723681	HeLa_polyA-_Chen.7916	0	.	120723044	120723681	0	1	637	0
chr12	120723353	120725367	MDAMB468_Thompson.10179	0	.	120723353	120725367	0	1	2014	0
chr12	120723370	120723712	adipose_Burge.15885	0	.	120723370	120723712	0	1	342	0
chr12	120758053	120759280	REMC_LuminalBreast.42202	0	.	120758053	120759280	0	1	1227	0
chr12	120927472	120927863	B_cells_Cheung.79928	0	.	120927472	120927863	0	1	391	0
chr12	120928423	120929399	H1_polyA+.46813	0	.	120928423	120929399	0	1	976	0
chr12	120928453	120929198	B_Cells_Pritchard.1373701	0	.	120928453	120929198	0	1	745	0
chr12	120928638	120929329	brain_AmbionMAQC.17799	0	.	120928638	120929329	0	1	691	0
chr12	120929773	120930220	B_Cells_Pritchard.1373709	0	+	120929773	120930220	0	1	447	0
chr12	120941082	120941572	prostate_carcinoma.40578	0	.	120941082	120941572	0	1	490	0
chr12	120941111	120941599	BT474_Burge_Thompson.13454	0	.	120941111	120941599	0	1	488	0
chr12	120941113	120942315	MCF7_Burge_Thompson.12191	0	.	120941113	120942315	0	1	1202	0
chr12	120941586	120942723	REMC_LuminalBreast.42248	0	.	120941586	120942723	0	1	1137	0
chr12	120941652	120942479	MIP101.27854	0	.	120941652	120942479	0	1	827	0
chr12	120941704	120942468	MDAMB468_Thompson.10198	0	.	120941704	120942468	0	1	764	0
chr12	120941706	120942816	ZR751_Thompson.9950	0	.	120941706	120942816	0	1	1110	0
chr12	120941710	120942708	T47D_Burge_Thompson.11794	0	.	120941710	120942708	0	1	998	0
chr12	120941790	120942399	BT20_Thompson.8743	0	.	120941790	120942399	0	1	609	0
chr12	120941927	120942529	melanoma_Garraway_short_term_cultures.27697	0	.	120941927	120942529	0	1	602	0
chr12	120941988	120942471	K562.18732	0	.	120941988	120942471	0	1	483	0
chr12	120985613	120986330	MB435_Burge.17432	0	.	120985613	120986330	0	1	717	0
chr12	120986557	120990743	H1_polyA+.46829	0	+	120986557	120990743	0	3	1417,164,166	0,3759,4020
chr12	120989836	120991107	B_cells_Cheung.79940	0	.	120989836	120991107	0	1	1271	0
chr12	120989849	120991187	H1_polyA+.46831	0	.	120989849	120991187	0	1	1338	0
chr12	120991534	120997475	prostate_carcinoma.40596	0	+	120991534	120997475	0	3	929,136,53	0,1215,5888
chr12	120991546	120992486	HepG2_Caltech_ENCODE.14617	0	.	120991546	120992486	0	1	940	0
chr12	120991682	120992478	H9_polyA+.18533	0	.	120991682	120992478	0	1	796	0
chr12	120995573	120996850	K562.18743	0	.	120995573	120996850	0	1	1277	0
chr12	120996156	120997266	H9_polyA+.18536	0	.	120996156	120997266	0	1	1110	0
chr12	121198641	121200134	melanoma_Garraway_short_term_cultures.27724	0	.	121198641	121200134	0	1	1493	0
chr12	121198715	121199534	CD4_Plagnol_activated.25930	0	.	121198715	121199534	0	1	819	0
chr12	121203297	121204534	REMC_BreastStem.21363	0	.	121203297	121204534	0	1	1237	0
chr12	121214897	121216111	REMC_BreastStem.21368	0	.	121214897	121216111	0	1	1214	0
chr12	121215159	121216405	REMC_MyoepithelialBreast.39685	0	.	121215159	121216405	0	1	1246	0
chr12	121319972	121320914	REMC_LuminalBreast.42323	0	.	121319972	121320914	0	1	942	0
chr12	121506263	121507341	REMC_MyoepithelialBreast.39714	0	.	121506263	121507341	0	1	1078	0
chr12	121510695	121511626	REMC_MyoepithelialBreast.39715	0	.	121510695	121511626	0	1	931	0
chr12	121511109	121512168	REMC_BreastStem.21279	0	.	121511109	121512168	0	1	1059	0
chr12	121513957	121515781	REMC_BreastStem.21282	0	.	121513957	121515781	0	1	1824	0
chr12	121514271	121515717	REMC_MyoepithelialBreast.39717	0	.	121514271	121515717	0	1	1446	0
chr12	121514577	121515886	REMC_LuminalBreast.42330	0	.	121514577	121515886	0	1	1309	0
chr12	121514798	121515134	pHIT000022795	0	+	121514798	121515134	0	1	336	0
chr12	121786482	121786840	B_cells_Cheung.80126	0	.	121786482	121786840	0	1	358	0
chr12	121788118	121788455	B_cells_Cheung.80127	0	.	121788118	121788455	0	1	337	0
chr12	121791644	121792078	B_cells_Cheung.80130	0	.	121791644	121792078	0	1	434	0
chr12	121958860	121961557	REMC_LuminalBreast.42405	0	.	121958860	121961557	0	1	2697	0
chr12	121958908	121959665	B_Cells_Pritchard.1375763	0	.	121958908	121959665	0	1	757	0
chr12	121959282	121959800	brain_AmbionMAQC.17887	0	.	121959282	121959800	0	1	518	0
chr12	121959956	121961076	brain_AmbionMAQC.17888	0	.	121959956	121961076	0	1	1120	0
chr12	121960105	121961107	B_cells_Cheung.80210	0	.	121960105	121961107	0	1	1002	0
chr12	121960486	121961118	B_Cells_Pritchard.1375767	0	.	121960486	121961118	0	1	632	0
chr12	121960506	121961272	REMC_MyoepithelialBreast.39876	0	.	121960506	121961272	0	1	766	0
chr12	121960646	121961104	BT474_Burge_Thompson.13500	0	.	121960646	121961104	0	1	458	0
chr12	121962168	121962771	B_cells_Cheung.80211	0	.	121962168	121962771	0	1	603	0
chr12	121962187	121963413	REMC_LuminalBreast.42406	0	.	121962187	121963413	0	1	1226	0
chr12	121962302	121962735	B_Cells_Pritchard.1375771	0	.	121962302	121962735	0	1	433	0
chr12	121962381	121962763	prostate_carcinoma.40920	0	.	121962381	121962763	0	1	382	0
chr12	121964294	121970375	REMC_LuminalBreast.42407	0	.	121964294	121970375	0	1	6081	0
chr12	121967821	121970342	B_cells_Cheung.80214	0	.	121967821	121970342	0	1	2521	0
chr12	121969219	121970407	H1_polyA+.46965	0	.	121969219	121970407	0	1	1188	0
chr12	122201256	122201609	B_cells_Cheung.80271	0	.	122201256	122201609	0	1	353	0
chr12	122201257	122201654	MDAMB231_Thompson.9201	0	.	122201257	122201654	0	1	397	0
chr12	122324402	122324939	B_cells_Cheung.80296	0	.	122324402	122324939	0	1	537	0
chr12	122415767	122416255	kidney_Gilad.36893	0	.	122415767	122416255	0	1	488	0
chr12	122429792	122430377	B_cells_Cheung.80353	0	.	122429792	122430377	0	1	585	0
chr12	122590631	122591084	B_Cells_Pritchard.1377251	0	.	122590631	122591084	0	1	453	0
chr12	122626436	122630173	K562.18881	0	-	122626436	122630173	0	3	296,745,273	0,2324,3464
chr12	122628638	122630329	B_cells_Cheung.80464	0	.	122628638	122630329	0	1	1691	0
chr12	122629735	122630167	melanoma_Garraway_short_term_cultures.28013	0	.	122629735	122630167	0	1	432	0
chr12	122629738	122630139	MeWo_Garraway.14688	0	.	122629738	122630139	0	1	401	0
chr12	122629815	122630203	HeLa_polyA+_Chen.15071	0	.	122629815	122630203	0	1	388	0
chr12	123140340	123141926	B_Cells_Pritchard.1378253	0	.	123140340	123141926	0	1	1586	0
chr12	123140542	123165633	Rinn_00021241	0	+	123140542	123165633	0	3	128,366,27	0,528,25064
chr12	123141989	123144453	prostate_normal.24017	0	-	123141989	123144453	0	2	8,971	0,1493
chr12	123142964	123143339	B_cells_Cheung.80582	0	.	123142964	123143339	0	1	375	0
chr12	123143203	123143776	BT474_Burge_Thompson.13668	0	.	123143203	123143776	0	1	573	0
chr12	123143344	123144453	prostate_normal.24015	0	.	123143344	123144453	0	1	1109	0
chr12	123143398	123144099	B_cells_Cheung.80583	0	.	123143398	123144099	0	1	701	0
chr12	123143860	123150577	prostate_carcinoma.40862	0	-	123143860	123150577	0	2	1231,247	0,6470
chr12	123143874	123144608	BT474_Burge_Thompson.13669	0	.	123143874	123144608	0	1	734	0
chr12	123147843	123150577	prostate_carcinoma.40864	0	.	123147843	123150577	0	1	2734	0
chr12	123210750	123238619	pHIT000112380	0	-	123210750	123238619	0	3	107,110,119	0,15341,27750
chr12	123225842	123226393	prostate_carcinoma.40887	0	.	123225842	123226393	0	1	551	0
chr12	123226715	123227526	B_Cells_Pritchard.1378571	0	.	123226715	123227526	0	1	811	0
chr12	123226736	123228067	prostate_carcinoma.40888	0	.	123226736	123228067	0	1	1331	0
chr12	123234780	123236047	prostate_carcinoma.40890	0	.	123234780	123236047	0	1	1267	0
chr12	123234989	123236017	BT474_Burge_Thompson.13671	0	.	123234989	123236017	0	1	1028	0
chr12	123236922	123239112	BT474_Burge_Thompson.13672	0	-	123236922	123239112	0	2	451,612	0,1578
chr12	123238198	123238843	prostate_carcinoma.40892	0	.	123238198	123238843	0	1	645	0
chr12	123249169	123250142	MCF10A_Thompson.9086	0	.	123249169	123250142	0	1	973	0
chr12	123249293	123250582	H1_polyA+.47156	0	.	123249293	123250582	0	1	1289	0
chr12	123249404	123250226	prostate_carcinoma.40893	0	.	123249404	123250226	0	1	822	0
chr12	123257761	123259469	BT20_Thompson.8856	0	.	123257761	123259469	0	1	1708	0
chr12	123292510	123293819	H1_polyA+.47161	0	.	123292510	123293819	0	1	1309	0
chr12	123329303	123329694	prostate_carcinoma.40897	0	.	123329303	123329694	0	1	391	0
chr12	123330314	123330661	A549_Myers.32683	0	.	123330314	123330661	0	1	347	0
chr12	123371390	123371802	A549_Myers.35444	0	.	123371390	123371802	0	1	412	0
chr12	123372561	123373504	prostate_carcinoma.41379	0	.	123372561	123373504	0	1	943	0
chr12	123627128	123628169	prostate_carcinoma.40952	0	.	123627128	123628169	0	1	1041	0
chr12	123638007	123638500	prostate_carcinoma.40953	0	.	123638007	123638500	0	1	493	0
chr12	123643598	123643925	A549_Myers.32769	0	.	123643598	123643925	0	1	327	0
chr12	123653425	123653773	A549_Myers.32771	0	.	123653425	123653773	0	1	348	0
chr12	123658941	123659560	prostate_carcinoma.40955	0	.	123658941	123659560	0	1	619	0
chr12	123661225	123661606	A549_Myers.32778	0	.	123661225	123661606	0	1	381	0
chr12	123661685	123662334	A549_Myers.32779	0	.	123661685	123662334	0	1	649	0
chr12	123671222	123675224	MIP101.28233	0	.	123671222	123675224	0	1	4002	0
chr12	123671806	123674555	BT474_Burge_Thompson.13674	0	.	123671806	123674555	0	1	2749	0
chr12	123672985	123674258	prostate_carcinoma.40956	0	.	123672985	123674258	0	1	1273	0
chr12	123683446	123683828	HeLa_polyA-_Chen.8008	0	.	123683446	123683828	0	1	382	0
chr12	123683679	123684063	A549_Myers.32787	0	.	123683679	123684063	0	1	384	0
chr12	123705890	123706966	prostate_carcinoma.40957	0	.	123705890	123706966	0	1	1076	0
chr12	123705890	123706302	prostate_normal.24038	0	.	123705890	123706302	0	1	412	0
chr12	123708378	123711166	prostate_carcinoma.40959	0	.	123708378	123711166	0	1	2788	0
chr12	123711317	123712324	prostate_carcinoma.40960	0	.	123711317	123712324	0	1	1007	0
chr12	123716895	123717522	prostate_normal.24040	0	.	123716895	123717522	0	1	627	0
chr12	123716900	123717441	prostate_carcinoma.40965	0	.	123716900	123717441	0	1	541	0
chr12	123724384	123725168	A549_Myers.32795	0	.	123724384	123725168	0	1	784	0
chr12	123726265	123726567	A549_Myers.32796	0	.	123726265	123726567	0	1	302	0
chr12	123727084	123727708	A549_Myers.32797	0	.	123727084	123727708	0	1	624	0
chr12	123729831	123730643	A549_Myers.32798	0	.	123729831	123730643	0	1	812	0
chr12	123754688	123756296	B_Cells_Pritchard.1379813	0	.	123754688	123756296	0	1	1608	0
chr12	123755946	123756371	B_cells_Cheung.80627	0	.	123755946	123756371	0	1	425	0
chr12	123782463	123783983	MIP101.28236	0	.	123782463	123783983	0	1	1520	0
chr12	123787077	123787483	A549_Myers.32807	0	.	123787077	123787483	0	1	406	0
chr12	123792757	123793684	prostate_carcinoma.40968	0	.	123792757	123793684	0	1	927	0
chr12	123792757	123793684	prostate_carcinoma.40967	0	+	123792757	123793684	0	2	130,478	0,449
chr12	123792763	123793587	prostate_normal.24041	0	.	123792763	123793587	0	1	824	0
chr12	123792798	123793654	Rinn_00020613	0	+	123792798	123793654	0	2	89,449	0,407
chr12	123793151	123793648	colon_Burge.15825	0	.	123793151	123793648	0	1	497	0
chr12	123793235	123793555	A549_Myers.32810	0	.	123793235	123793555	0	1	320	0
chr12	123793325	123793899	liver_polyA+.56564	0	.	123793325	123793899	0	1	574	0
chr12	123795812	123797524	prostate_carcinoma.40971	0	.	123795812	123797524	0	1	1712	0
chr12	123796309	123796823	A549_Myers.32811	0	.	123796309	123796823	0	1	514	0
chr12	123798901	123799505	B_cells_Cheung.80628	0	.	123798901	123799505	0	1	604	0
chr12	123798968	123799371	prostate_normal.24042	0	.	123798968	123799371	0	1	403	0
chr12	123799108	123799464	A549_Myers.32815	0	.	123799108	123799464	0	1	356	0
chr12	123799981	123802013	prostate_carcinoma.40973	0	.	123799981	123802013	0	1	2032	0
chr12	123800725	123801355	prostate_normal.24044	0	.	123800725	123801355	0	1	630	0
chr12	123808869	123809233	A549_Myers.32817	0	.	123808869	123809233	0	1	364	0
chr12	123810752	123811363	A549_Myers.32818	0	.	123810752	123811363	0	1	611	0
chr12	123815476	123815809	A549_Myers.32820	0	.	123815476	123815809	0	1	333	0
chr12	123818762	123825399	B_Cells_Pritchard.1380069	0	+	123818762	123825399	0	2	104,3562	0,3075
chr12	123818973	123819686	B_cells_Cheung.80631	0	.	123818973	123819686	0	1	713	0
chr12	123818979	123819365	B_Cells_Pritchard.1380071	0	+	123818979	123819365	0	1	386	0
chr12	123820498	123820944	B_cells_Cheung.80633	0	.	123820498	123820944	0	1	446	0
chr12	123821785	123827120	B_cells_Cheung.80635	0	.	123821785	123827120	0	1	5335	0
chr12	123822706	123823062	A549_Myers.32826	0	.	123822706	123823062	0	1	356	0
chr12	123823246	123823583	A549_Myers.32827	0	.	123823246	123823583	0	1	337	0
chr12	123824900	123826145	REMC_LuminalBreast.42547	0	.	123824900	123826145	0	1	1245	0
chr12	123826348	123827087	REMC_LuminalBreast.42548	0	.	123826348	123827087	0	1	739	0
chr12	123931273	123933510	B_cells_Cheung.80751	0	.	123931273	123933510	0	1	2237	0
chr12	123931389	123933304	REMC_MyoepithelialBreast.39939	0	.	123931389	123933304	0	1	1915	0
chr12	123932492	123933170	MIP101.28254	0	.	123932492	123933170	0	1	678	0
chr12	123933163	123936042	REMC_LuminalBreast.44031	0	.	123933163	123936042	0	1	2879	0
chr12	123933445	123934922	REMC_MyoepithelialBreast.39940	0	.	123933445	123934922	0	1	1477	0
chr12	123933614	123934191	B_cells_Cheung.80752	0	.	123933614	123934191	0	1	577	0
chr12	123935030	123935459	B_cells_Cheung.80753	0	.	123935030	123935459	0	1	429	0
chr12	123944146	123948353	REMC_MyoepithelialBreast.40470	0	.	123944146	123948353	0	1	4207	0
chr12	123946508	123948159	REMC_LuminalBreast.44040	0	.	123946508	123948159	0	1	1651	0
chr12	123946559	123948069	B_cells_Cheung.80904	0	.	123946559	123948069	0	1	1510	0
chr12	123947182	123947741	B_Cells_Pritchard.1380513	0	-	123947182	123947741	0	1	559	0
chr12	123952408	123953038	REMC_LuminalBreast.44045	0	.	123952408	123953038	0	1	630	0
chr12	123971126	123972553	B_cells_Cheung.80707	0	.	123971126	123972553	0	1	1427	0
chr12	123975666	123979149	pHIT000022867	0	+	123975666	123979149	0	3	29,248,296	0,80,3187
chr12	123975856	123976209	B_cells_Cheung.80711	0	.	123975856	123976209	0	1	353	0
chr12	123978377	123981956	B_cells_Cheung.80714	0	.	123978377	123981956	0	1	3579	0
chr12	123978692	123979831	REMC_BreastStem.21401	0	.	123978692	123979831	0	1	1139	0
chr12	123979143	123980872	REMC_LuminalBreast.42617	0	.	123979143	123980872	0	1	1729	0
chr12	123984491	123986480	B_cells_Cheung.80719	0	.	123984491	123986480	0	1	1989	0
chr12	123985346	123986514	REMC_LuminalBreast.42618	0	.	123985346	123986514	0	1	1168	0
chr12	123985953	123986394	ENST00000480427	0	-	123985953	123986394	0	1	441	0
chr12	123985981	123986364	ENST00000462500	0	-	123985981	123986364	0	1	383	0
chr12	123985982	123986310	K562.18935	0	.	123985982	123986310	0	1	328	0
chr12	123987918	123992029	B_cells_Cheung.80721	0	.	123987918	123992029	0	1	4111	0
chr12	123988455	123991997	REMC_LuminalBreast.42619	0	.	123988455	123991997	0	1	3542	0
chr12	123988795	123991615	REMC_BreastStem.21402	0	.	123988795	123991615	0	1	2820	0
chr12	123989114	123991990	HepG2_Caltech_ENCODE.14777	0	.	123989114	123991990	0	1	2876	0
chr12	123989140	123990052	HeLa_polyA+_Chen.15147	0	.	123989140	123990052	0	1	912	0
chr12	123989447	123991039	prostate_carcinoma.41286	0	.	123989447	123991039	0	1	1592	0
chr12	123989645	123992032	CD4_Plagnol_activated.26316	0	.	123989645	123992032	0	1	2387	0
chr12	123989694	123991758	brain_AmbionMAQC.18037	0	.	123989694	123991758	0	1	2064	0
chr12	123990235	123991229	CD4_Plagnol_resting.25484	0	.	123990235	123991229	0	1	994	0
chr12	123990427	123990896	CD4_Snyder.31799	0	.	123990427	123990896	0	1	469	0
chr12	123990474	123990996	K562.18938	0	.	123990474	123990996	0	1	522	0
chr12	123990504	123991926	HeLa_polyA+_Chen.15148	0	.	123990504	123991926	0	1	1422	0
chr12	123990512	123990943	prostate_normal.24058	0	.	123990512	123990943	0	1	431	0
chr12	123990534	123990941	MIP101.28259	0	.	123990534	123990941	0	1	407	0
chr12	123991068	123991627	A549_Myers.32864	0	.	123991068	123991627	0	1	559	0
chr12	123992390	123992809	CD4_Plagnol_activated.26317	0	.	123992390	123992809	0	1	419	0
chr12	123993086	123996315	H1_polyA+.47198	0	.	123993086	123996315	0	1	3229	0
chr12	123995247	123996319	B_cells_Cheung.80726	0	.	123995247	123996319	0	1	1072	0
chr12	123995311	123996217	HepG2_Caltech_ENCODE.14780	0	.	123995311	123996217	0	1	906	0
chr12	124077397	124078250	H9_polyA+.18683	0	.	124077397	124078250	0	1	853	0
chr12	124077436	124078352	BT20_Thompson.8871	0	.	124077436	124078352	0	1	916	0
chr12	124077436	124081685	T47D_Burge_Thompson.12039	0	.	124077436	124081685	0	1	4249	0
chr12	124077645	124078161	H1_rRNA-depleted_UCSD_REMC.36913	0	.	124077645	124078161	0	1	516	0
chr12	124078027	124078352	ZR751_Thompson.10092	0	.	124078027	124078352	0	1	325	0
chr12	124078029	124078347	brain_AmbionMAQC.18047	0	.	124078029	124078347	0	1	318	0
chr12	124078286	124081584	MDAMB231_Thompson.9274	0	.	124078286	124081584	0	1	3298	0
chr12	124078419	124081655	HepG2_Caltech_ENCODE.14783	0	.	124078419	124081655	0	1	3236	0
chr12	124078420	124081595	REMC_LuminalBreast.42630	0	.	124078420	124081595	0	1	3175	0
chr12	124078420	124081706	H9_polyA+.18684	0	.	124078420	124081706	0	1	3286	0
chr12	124078434	124079939	H1_polyA+.47204	0	.	124078434	124079939	0	1	1505	0
chr12	124078436	124081726	REMC_MyoepithelialBreast.39989	0	.	124078436	124081726	0	1	3290	0
chr12	124078439	124084571	B_cells_Cheung.81267	0	.	124078439	124084571	0	1	6132	0
chr12	124078443	124081660	brain_AmbionMAQC.18056	0	.	124078443	124081660	0	1	3217	0
chr12	124078445	124079842	MCF7_Burge_Thompson.12404	0	.	124078445	124079842	0	1	1397	0
chr12	124078445	124081688	BT20_Thompson.8870	0	.	124078445	124081688	0	1	3243	0
chr12	124078450	124081764	ZR751_Thompson.10093	0	.	124078450	124081764	0	1	3314	0
chr12	124078450	124079766	melanoma_Garraway_short_term_cultures.28102	0	.	124078450	124079766	0	1	1316	0
chr12	124078450	124081859	CD4_Plagnol_resting.25504	0	.	124078450	124081859	0	1	3409	0
chr12	124078454	124079764	CD4_Plagnol_activated.26327	0	.	124078454	124079764	0	1	1310	0
chr12	124078455	124080026	prostate_normal.24062	0	-	124078455	124080026	0	2	1311,73	0,1498
chr12	124078458	124079755	prostate_carcinoma.41295	0	.	124078458	124079755	0	1	1297	0
chr12	124078459	124079756	A549_Myers.32877	0	.	124078459	124079756	0	1	1297	0
chr12	124078460	124079418	HeLa_polyA-_Chen.8017	0	.	124078460	124079418	0	1	958	0
chr12	124078462	124079847	MeWo_Garraway.14817	0	.	124078462	124079847	0	1	1385	0
chr12	124078470	124081665	K562.18955	0	.	124078470	124081665	0	1	3195	0
chr12	124078481	124079732	NEC_from_H9.31268	0	.	124078481	124079732	0	1	1251	0
chr12	124078611	124079734	MeI_Garraway.7464	0	.	124078611	124079734	0	1	1123	0
chr12	124085281	124086643	B_cells_Cheung.81276	0	.	124085281	124086643	0	1	1362	0
chr12	124093281	124096440	B_cells_Cheung.81280	0	.	124093281	124096440	0	1	3159	0
chr12	124099215	124100718	B_cells_Cheung.81283	0	.	124099215	124100718	0	1	1503	0
chr12	124099976	124100359	A549_Myers.32886	0	.	124099976	124100359	0	1	383	0
chr12	124107389	124108943	H1_polyA+.47214	0	.	124107389	124108943	0	1	1554	0
chr12	124109959	124110553	H1_polyA+.47215	0	.	124109959	124110553	0	1	594	0
chr12	124194844	124198255	B_cells_Cheung.80793	0	.	124194844	124198255	0	1	3411	0
chr12	124212056	124213401	REMC_LuminalBreast.42643	0	.	124212056	124213401	0	1	1345	0
chr12	124217703	124218895	REMC_LuminalBreast.42647	0	.	124217703	124218895	0	1	1192	0
chr12	124218999	124223836	REMC_LuminalBreast.42648	0	.	124218999	124223836	0	1	4837	0
chr12	124223991	124225447	REMC_LuminalBreast.42649	0	.	124223991	124225447	0	1	1456	0
chr12	124230257	124233088	H1_polyA+.47338	0	.	124230257	124233088	0	1	2831	0
chr12	124231801	124232854	REMC_LuminalBreast.42654	0	.	124231801	124232854	0	1	1053	0
chr12	124233625	124234023	A549_Myers.32912	0	.	124233625	124234023	0	1	398	0
chr12	124236436	124236764	A549_Myers.32915	0	.	124236436	124236764	0	1	328	0
chr12	124236844	124237382	A549_Myers.32916	0	.	124236844	124237382	0	1	538	0
chr12	124237769	124238093	A549_Myers.32917	0	.	124237769	124238093	0	1	324	0
chr12	124237804	124238322	H9_polyA-_Chen.5986	0	.	124237804	124238322	0	1	518	0
chr12	124244842	124299581	pHIT000022874	0	-	124244842	124299581	0	2	370,23	0,54716
chr12	124256980	124258171	H1_polyA+.47340	0	.	124256980	124258171	0	1	1191	0
chr12	124259249	124261927	H1_polyA+.47342	0	.	124259249	124261927	0	1	2678	0
chr12	124264495	124268056	H1_polyA+.47346	0	.	124264495	124268056	0	1	3561	0
chr12	124269944	124270562	H1_polyA+.47348	0	.	124269944	124270562	0	1	618	0
chr12	124270680	124272774	H1_polyA+.47349	0	.	124270680	124272774	0	1	2094	0
chr12	124277731	124278746	H1_polyA+.47355	0	.	124277731	124278746	0	1	1015	0
chr12	124283094	124286702	H1_polyA+.47360	0	.	124283094	124286702	0	1	3608	0
chr12	124288894	124291531	H1_polyA+.47363	0	.	124288894	124291531	0	1	2637	0
chr12	124294053	124296530	H1_polyA+.47365	0	.	124294053	124296530	0	1	2477	0
chr12	124296641	124297222	H1_polyA+.47366	0	.	124296641	124297222	0	1	581	0
chr12	124298919	124300190	H1_polyA+.47368	0	.	124298919	124300190	0	1	1271	0
chr12	124302335	124304493	H1_polyA+.47370	0	.	124302335	124304493	0	1	2158	0
chr12	124304679	124306122	H1_polyA+.47371	0	.	124304679	124306122	0	1	1443	0
chr12	124317336	124319564	H1_polyA+.47379	0	.	124317336	124319564	0	1	2228	0
chr12	124323523	124324356	H1_polyA+.47385	0	.	124323523	124324356	0	1	833	0
chr12	124324421	124332284	H1_polyA+.47387	0	-	124324421	124332284	0	2	310,4271	0,3592
chr12	124327893	124332284	H1_polyA+.47389	0	.	124327893	124332284	0	1	4391	0
chr12	124332545	124336905	H1_polyA+.47390	0	.	124332545	124336905	0	1	4360	0
chr12	124338968	124339976	H1_polyA+.47392	0	.	124338968	124339976	0	1	1008	0
chr12	124346586	124347158	H1_polyA+.47396	0	.	124346586	124347158	0	1	572	0
chr12	124350046	124350989	H1_polyA+.47399	0	.	124350046	124350989	0	1	943	0
chr12	124367189	124367665	B_Cells_Pritchard.1381049	0	.	124367189	124367665	0	1	476	0
chr12	124710206	124712867	HIT000019641	0	-	124710206	124712867	0	1	2661	0
chr12	124710668	124712870	B_cells_Cheung.80849	0	.	124710668	124712870	0	1	2202	0
chr12	124711051	124712832	H9_polyA+.18734	0	.	124711051	124712832	0	1	1781	0
chr12	124711075	124712864	brain_AmbionMAQC.18070	0	.	124711075	124712864	0	1	1789	0
chr12	124711079	124713014	BT474_Burge_Thompson.13690	0	.	124711079	124713014	0	1	1935	0
chr12	124911614	124912138	brain_AmbionMAQC.18075	0	.	124911614	124912138	0	1	524	0
chr12	124973686	124974412	B_Cells_Pritchard.1382411	0	.	124973686	124974412	0	1	726	0
chr12	125009172	125033873	HIT000259782	0	-	125009172	125033873	0	6	279,240,73,1143,186,171	0,3068,4337,7526,11137,24530
chr12	125009186	125033873	NR_034132	0	-	125009186	125033873	0	6	265,240,73,1143,186,171	0,3054,4323,7512,11123,24516
chr12	125009187	125033873	Rinn_00020225	0	-	125009187	125033873	0	6	264,1343,710,150,187,172	0,3052,7510,8504,11121,24514
chr12	125009187	125033873	Rinn_00020176	0	-	125009187	125033873	0	6	264,241,74,1144,187,172	0,3052,4321,7510,11121,24514
chr12	125009188	125033874	HIT000014244	0	-	125009188	125033874	0	6	263,1342,709,149,186,172	0,3052,7510,8504,11121,24514
chr12	125009188	125033872	ENST00000507313	0	-	125009188	125033872	0	6	263,1342,709,149,186,170	0,3052,7510,8504,11121,24514
chr12	125009215	125009911	prostate_normal.24079	0	.	125009215	125009911	0	1	696	0
chr12	125022498	125022802	liver_polyA+.56700	0	.	125022498	125022802	0	1	304	0
chr12	125035425	125037288	prostate_carcinoma.41095	0	.	125035425	125037288	0	1	1863	0
chr12	125035458	125037334	H1_polyA+.47257	0	.	125035458	125037334	0	1	1876	0
chr12	125036483	125037430	REMC_MyoepithelialBreast.40075	0	.	125036483	125037430	0	1	947	0
chr12	125241842	125243107	H1_polyA+.47258	0	.	125241842	125243107	0	1	1265	0
chr12	125241938	125242259	A549_Myers.32927	0	.	125241938	125242259	0	1	321	0
chr12	125247580	125250683	REMC_LuminalBreast.42657	0	.	125247580	125250683	0	1	3103	0
chr12	125248861	125250688	H1_polyA+.47260	0	.	125248861	125250688	0	1	1827	0
chr12	125251680	125254851	REMC_LuminalBreast.42659	0	.	125251680	125254851	0	1	3171	0
chr12	125254975	125257282	REMC_LuminalBreast.42660	0	.	125254975	125257282	0	1	2307	0
chr12	125263181	125265323	REMC_LuminalBreast.42663	0	.	125263181	125265323	0	1	2142	0
chr12	125266729	125268094	REMC_LuminalBreast.42664	0	.	125266729	125268094	0	1	1365	0
chr12	125291282	125292479	REMC_LuminalBreast.42668	0	.	125291282	125292479	0	1	1197	0
chr12	125366797	125369919	pHIT000112406	0	-	125366797	125369919	0	2	213,105	0,3017
chr12	125385110	125386532	REMC_LuminalBreast.42678	0	.	125385110	125386532	0	1	1422	0
chr12	125410603	125411552	H1_polyA+.47268	0	.	125410603	125411552	0	1	949	0
chr12	125432238	125433174	REMC_LuminalBreast.42684	0	.	125432238	125433174	0	1	936	0
chr12	125714206	125740823	Rinn_00021435	0	-	125714206	125740823	0	3	391,162,291	0,1695,26326
chr12	125753584	125792754	pHIT000112408	0	+	125753584	125792754	0	5	49,105,432,127,57	0,569,23371,24471,39113
chr12	125763317	125764346	REMC_BreastStem.21502	0	.	125763317	125764346	0	1	1029	0
chr12	125766248	125773289	REMC_BreastStem.21504	0	.	125766248	125773289	0	1	7041	0
chr12	125776537	125777726	B_Cells_Pritchard.1384159	0	-	125776537	125777726	0	1	1189	0
chr12	125777196	125777726	B_Cells_Pritchard.1384161	0	+	125777196	125777726	0	1	530	0
chr12	125779779	125780697	B_Cells_Pritchard.1384183	0	-	125779779	125780697	0	1	918	0
chr12	125784807	125787084	B_Cells_Pritchard.1384215	0	.	125784807	125787084	0	1	2277	0
chr12	125785920	125787447	HIT000095327	0	-	125785920	125787447	0	1	1527	0
chr12	125791074	125792361	CD4_Plagnol_activated.26338	0	.	125791074	125792361	0	1	1287	0
chr12	125791369	125793172	melanoma_Garraway_short_term_cultures.28116	0	.	125791369	125793172	0	1	1803	0
chr12	125791598	125792956	prostate_carcinoma.41106	0	.	125791598	125792956	0	1	1358	0
chr12	125792435	125793201	B_cells_Cheung.80867	0	.	125792435	125793201	0	1	766	0
chr12	125792487	125793227	CD4_Plagnol_activated.26339	0	.	125792487	125793227	0	1	740	0
chr12	125795806	125798908	melanoma_Garraway_short_term_cultures.28117	0	-	125795806	125798908	0	2	1025,479	0,2623
chr12	125801050	125801409	CD4_Plagnol_activated.26341	0	.	125801050	125801409	0	1	359	0
chr12	125802626	125802935	B_cells_Cheung.80869	0	.	125802626	125802935	0	1	309	0
chr12	125805509	125806185	CD4_Plagnol_activated.26345	0	.	125805509	125806185	0	1	676	0
chr12	125949104	125949453	B_Cells_Pritchard.1384519	0	.	125949104	125949453	0	1	349	0
chr12	126014272	126015387	melanoma_Garraway_short_term_cultures.28126	0	.	126014272	126015387	0	1	1115	0
chr12	126040185	126040764	K562.18970	0	.	126040185	126040764	0	1	579	0
chr12	126088709	126089700	K562.19106	0	.	126088709	126089700	0	1	991	0
chr12	126110569	126202299	K562.19101	0	+	126110569	126202299	0	4	1263,35,1880,6090	0,21903,59482,85640
chr12	126112010	126113234	melanoma_Garraway_short_term_cultures.28129	0	.	126112010	126113234	0	1	1224	0
chr12	126170058	126171925	melanoma_Garraway_short_term_cultures.28134	0	.	126170058	126171925	0	1	1867	0
chr12	126175881	126211937	K562.19100	0	-	126175881	126211937	0	4	448,4896,228,236	0,19302,25005,35820
chr12	126179442	126179841	K562.19129	0	.	126179442	126179841	0	1	399	0
chr12	126180535	126197493	HeLa_polyA+_Chen.15161	0	+	126180535	126197493	0	2	221,1284	0,15674
chr12	126189850	126190559	K562.19136	0	.	126189850	126190559	0	1	709	0
chr12	126196131	126197433	B_Cells_Pritchard.1385117	0	.	126196131	126197433	0	1	1302	0
chr12	126196212	126196544	MeI_Garraway.7474	0	.	126196212	126196544	0	1	332	0
chr12	126196216	126197502	BT20_Thompson.8866	0	.	126196216	126197502	0	1	1286	0
chr12	126196419	126196971	pHIT000022875	0	+	126196419	126196971	0	1	552	0
chr12	126196606	126197439	brain_AmbionMAQC.18078	0	.	126196606	126197439	0	1	833	0
chr12	126196658	126197394	REMC_MyoepithelialBreast.40077	0	.	126196658	126197394	0	1	736	0
chr12	126196879	126197520	REMC_BreastStem.21426	0	.	126196879	126197520	0	1	641	0
chr12	126197178	126197778	MeI_Garraway.7475	0	.	126197178	126197778	0	1	600	0
chr12	126203331	126208472	K562.19143	0	.	126203331	126208472	0	1	5141	0
chr12	126204149	126208460	K562.19146	0	-	126204149	126208460	0	2	1931,2134	0,2177
chr12	126204158	126206390	HeLa_polyA+_Chen.15164	0	.	126204158	126206390	0	1	2232	0
chr12	126205110	126205842	melanoma_Garraway_short_term_cultures.28143	0	.	126205110	126205842	0	1	732	0
chr12	126205980	126207248	melanoma_Garraway_short_term_cultures.28144	0	.	126205980	126207248	0	1	1268	0
chr12	126206759	126207487	HeLa_polyA+_Chen.15163	0	.	126206759	126207487	0	1	728	0
chr12	126220567	126221569	K562.18972	0	.	126220567	126221569	0	1	1002	0
chr12	126220768	126311618	pHIT000112409	0	+	126220768	126311618	0	3	381,100,89	0,35975,90761
chr12	126286777	126287307	melanoma_Garraway_short_term_cultures.28148	0	.	126286777	126287307	0	1	530	0
chr12	126318854	126330430	pHIT000112411	0	-	126318854	126330430	0	3	179,126,400	0,7092,11176
chr12	126331076	126331537	A549_Myers.32935	0	.	126331076	126331537	0	1	461	0
chr12	126339395	126339952	B_cells_Cheung.80889	0	.	126339395	126339952	0	1	557	0
chr12	126506838	126507394	brain_AmbionMAQC.18082	0	.	126506838	126507394	0	1	556	0
chr12	126511380	126511937	H1_polyA+.47272	0	.	126511380	126511937	0	1	557	0
chr12	126511514	126512035	brain_AmbionMAQC.18085	0	.	126511514	126512035	0	1	521	0
chr12	126620311	126621142	B_cells_Cheung.80892	0	.	126620311	126621142	0	1	831	0
chr12	126681820	126704459	pHIT000112414	0	-	126681820	126704459	0	4	210,45,74,193	0,4035,12126,22446
chr12	126876427	126876742	testes_Burge.21829	0	.	126876427	126876742	0	1	315	0
chr12	126932113	126949137	Rinn_00020163	0	+	126932113	126949137	0	3	116,95,1812	0,12251,15212
chr12	126932114	126949137	NR_033987	0	+	126932114	126949137	0	3	115,94,1811	0,12251,15212
chr12	126932139	126949137	HIT000019679	0	+	126932139	126949137	0	3	90,94,1811	0,12226,15187
chr12	126932798	126935344	B_Cells_Pritchard.1386755	0	.	126932798	126935344	0	1	2546	0
chr12	126995548	126996499	prostate_carcinoma.41110	0	.	126995548	126996499	0	1	951	0
chr12	127137484	127168720	Rinn_00021451	0	-	127137484	127168720	0	5	312,129,141,96,99	0,741,25717,30926,31137
chr12	127169774	127171007	A549_Myers.32941	0	+	127169774	127171007	0	2	269,113	0,1120
chr12	127240280	127240780	BT474_Burge_Thompson.13703	0	.	127240280	127240780	0	1	500	0
chr12	127256029	127256601	A549_Myers.32942	0	.	127256029	127256601	0	1	572	0
chr12	127762950	127764384	H1_polyA+.47277	0	.	127762950	127764384	0	1	1434	0
chr12	127837081	127838950	B_Cells_Pritchard.1389337	0	+	127837081	127838950	0	3	989,302,578	0,989,1291
chr12	127837115	127837848	B_cells_Cheung.80913	0	.	127837115	127837848	0	1	733	0
chr12	127838999	127839361	B_cells_Cheung.80916	0	.	127838999	127839361	0	1	362	0
chr12	127842912	127843315	B_Cells_Pritchard.1389353	0	+	127842912	127843315	0	1	403	0
chr12	127879400	127897202	pHIT000112419	0	+	127879400	127897202	0	4	93,138,204,246	0,16410,16792,17556
chr12	127889161	127890458	H1_polyA+.47293	0	.	127889161	127890458	0	1	1297	0
chr12	127889944	127890468	B_cells_Cheung.80932	0	.	127889944	127890468	0	1	524	0
chr12	127891209	127895234	B_Cells_Pritchard.1389387	0	+	127891209	127895234	0	2	1560,772	0,3253
chr12	127891539	127892417	REMC_MyoepithelialBreast.40089	0	.	127891539	127892417	0	1	878	0
chr12	127893427	127894393	H1_polyA+.47294	0	.	127893427	127894393	0	1	966	0
chr12	127893638	127895247	B_cells_Cheung.80936	0	.	127893638	127895247	0	1	1609	0
chr12	127893785	127903465	XR_079323	0	-	127893785	127903465	0	4	1468,1622,76,166	0,1794,3467,9514
chr12	127893785	127897596	XR_078788	0	-	127893785	127897596	0	5	1666,128,439,139,263	0,1775,2338,2815,3548
chr12	127893786	127896269	HIT000045145	0	-	127893786	127896269	0	2	1608,386	0,2097
chr12	127894621	127895165	liver_polyA+.56744	0	.	127894621	127895165	0	1	544	0
chr12	127894633	127903465	XR_078471	0	-	127894633	127903465	0	4	232,583,85,166	0,232,2610,8666
chr12	127897255	127897801	B_cells_Cheung.80938	0	.	127897255	127897801	0	1	546	0
chr12	127898051	127899280	B_cells_Cheung.80939	0	.	127898051	127899280	0	1	1229	0
chr12	127898191	127899937	B_Cells_Pritchard.1389413	0	-	127898191	127899937	0	1	1746	0
chr12	127898412	127899430	H1_polyA+.47296	0	.	127898412	127899430	0	1	1018	0
chr12	128074906	128076111	BT474_Burge_Thompson.13711	0	.	128074906	128076111	0	1	1205	0
chr12	128075294	128075908	B_Cells_Pritchard.1390025	0	.	128075294	128075908	0	1	614	0
chr12	128118796	128119416	brain_AmbionMAQC.18119	0	.	128118796	128119416	0	1	620	0
chr12	129008083	129010560	Rinn_00020653	0	+	129008083	129010560	0	2	282,698	0,1779
chr12	129060474	129060822	A549_Myers.32972	0	.	129060474	129060822	0	1	348	0
chr12	129063918	129065502	prostate_carcinoma.41155	0	-	129063918	129065502	0	2	983,493	0,1091
chr12	129067295	129081194	prostate_carcinoma.41174	0	-	129067295	129081194	0	2	2288,273	0,13626
chr12	129069174	129075455	prostate_carcinoma.41175	0	+	129069174	129075455	0	2	877,110	0,6171
chr12	129093129	129093470	prostate_carcinoma.41188	0	.	129093129	129093470	0	1	341	0
chr12	129093533	129095615	prostate_carcinoma.41172	0	.	129093533	129095615	0	1	2082	0
chr12	129094286	129095594	prostate_normal.24115	0	.	129094286	129095594	0	1	1308	0
chr12	129094658	129095692	MIP101.28316	0	.	129094658	129095692	0	1	1034	0
chr12	129095041	129095396	BT474_Burge_Thompson.13714	0	.	129095041	129095396	0	1	355	0
chr12	129105513	129106204	B_Cells_Pritchard.1392373	0	.	129105513	129106204	0	1	691	0
chr12	129105586	129106003	A549_Myers.32976	0	.	129105586	129106003	0	1	417	0
chr12	129137678	129138954	prostate_carcinoma.41164	0	.	129137678	129138954	0	1	1276	0
chr12	129168393	129169497	REMC_MyoepithelialBreast.40092	0	.	129168393	129169497	0	1	1104	0
chr12	129172700	129201267	Rinn_00020998	0	-	129172700	129201267	0	2	52,2359	0,26208
chr12	129175972	129176742	REMC_BreastStem.21432	0	.	129175972	129176742	0	1	770	0
chr12	129183698	129188182	HeLa_polyA+_Chen.15174	0	+	129183698	129188182	0	2	1370,1222	0,3262
chr12	129183698	129185107	HeLa_polyA+_Chen.15173	0	.	129183698	129185107	0	1	1409	0
chr12	129185167	129186377	HeLa_polyA+_Chen.15175	0	.	129185167	129186377	0	1	1210	0
chr12	129194789	129212868	prostate_carcinoma.41166	0	-	129194789	129212868	0	8	1902,801,107,5274,219,431,621,409	0,2461,3334,4033,10181,11060,12752,17670
chr12	129194815	129197048	REMC_BreastStem.21434	0	.	129194815	129197048	0	1	2233	0
chr12	129194825	129204129	HeLa_polyA+_Chen.15177	0	.	129194825	129204129	0	1	9304	0
chr12	129198123	129204000	prostate_carcinoma.41167	0	.	129198123	129204000	0	1	5877	0
chr12	129198203	129199109	REMC_BreastStem.21473	0	.	129198203	129199109	0	1	906	0
chr12	129198320	129206425	khalil_551	0	.	129198320	129206425	0	2	1462,531	0,7574
chr12	129199223	129204092	REMC_BreastStem.21474	0	.	129199223	129204092	0	1	4869	0
chr12	129199509	129200445	brain_AmbionMAQC.18128	0	.	129199509	129200445	0	1	936	0
chr12	129201389	129212722	Rinn_00020999	0	-	129201389	129212722	0	4	2707,220,432,264	0,3580,4459,11069
chr12	129201389	129212722	Rinn_00021000	0	-	129201389	129212722	0	3	2707,1311,264	0,3580,11069
chr12	129202082	129212721	Rinn_00020227	0	-	129202082	129212721	0	4	2014,217,432,263	0,2887,3766,10376
chr12	129202089	129212176	Rinn_00020180	0	-	129202089	129212176	0	4	2007,220,432,1023	0,2880,3759,9064
chr12	129202090	129212176	NR_033834	0	-	129202090	129212176	0	4	2006,219,431,1022	0,2880,3759,9064
chr12	129202090	129212176	ENST00000509760	0	-	129202090	129212176	0	4	2006,219,431,1022	0,2880,3759,9064
chr12	129202135	129212739	HIT000012661	0	-	129202135	129212739	0	4	1961,216,431,280	0,2835,3714,10324
chr12	129202135	129212723	ENST00000505807	0	-	129202135	129212723	0	4	1961,216,431,264	0,2835,3714,10324
chr12	129203531	129212754	Rinn_00021001	0	-	129203531	129212754	0	3	1658,432,296	0,2317,8927
chr12	129204298	129212709	REMC_BreastStem.21475	0	-	129204298	129212709	0	3	891,512,250	0,1470,8161
chr12	129204331	129212886	HeLa_polyA+_Chen.15181	0	-	129204331	129212886	0	3	858,493,427	0,1456,8128
chr12	129205694	129208162	prostate_carcinoma.41168	0	.	129205694	129208162	0	1	2468	0
chr12	129205724	129208163	prostate_normal.24118	0	.	129205724	129208163	0	1	2439	0
chr12	129205724	129212853	prostate_normal.24120	0	-	129205724	129212853	0	2	556,1047	0,6082
chr12	129205775	129206274	brain_AmbionMAQC.18132	0	.	129205775	129206274	0	1	499	0
chr12	129206078	129212823	colon_Burge.15887	0	-	129206078	129212823	0	2	202,364	0,6381
chr12	129427930	129428374	A549_Myers.32980	0	.	129427930	129428374	0	1	444	0
chr12	129803367	129803779	A549_Myers.32997	0	.	129803367	129803779	0	1	412	0
chr12	129808974	129838664	pHIT000086218	0	+	129808974	129838664	0	5	52,68,215,161,119	0,2262,3712,25072,29571
chr12	129808974	129834326	pHIT000022883	0	+	129808974	129834326	0	5	52,68,215,161,56	0,2262,3712,25072,25296
chr12	129812661	129813313	B_Cells_Pritchard.1394215	0	.	129812661	129813313	0	1	652	0
chr12	129818561	129819337	H1_polyA+.47502	0	.	129818561	129819337	0	1	776	0
chr12	129826458	129826953	A549_Myers.32999	0	.	129826458	129826953	0	1	495	0
chr12	129830952	129831639	brain_AmbionMAQC.18143	0	.	129830952	129831639	0	1	687	0
chr12	129831242	129831854	B_Cells_Pritchard.1394299	0	.	129831242	129831854	0	1	612	0
chr12	130271211	130272994	B_Cells_Pritchard.1395463	0	.	130271211	130272994	0	1	1783	0
chr12	130271285	130272718	B_cells_Cheung.81096	0	.	130271285	130272718	0	1	1433	0
chr12	130273386	130273751	A549_Myers.33095	0	.	130273386	130273751	0	1	365	0
chr12	130273619	130274091	B_Cells_Pritchard.1395461	0	.	130273619	130274091	0	1	472	0
chr12	130279502	130280308	K562.19003	0	.	130279502	130280308	0	1	806	0
chr12	130279770	130280753	HeLa_polyA+_Chen.15186	0	.	130279770	130280753	0	1	983	0
chr12	130279791	130280196	A549_Myers.33097	0	.	130279791	130280196	0	1	405	0
chr12	130281080	130282231	HeLa_polyA+_Chen.15187	0	.	130281080	130282231	0	1	1151	0
chr12	130282512	130296802	K562.19008	0	-	130282512	130296802	0	2	5694,33	0,14257
chr12	130284007	130285042	HeLa_polyA+_Chen.15190	0	.	130284007	130285042	0	1	1035	0
chr12	130286008	130288021	HIT000300941	0	-	130286008	130288021	0	1	2013	0
chr12	130286445	130288066	HeLa_polyA+_Chen.15191	0	.	130286445	130288066	0	1	1621	0
chr12	130287343	130288051	MCF7_Burge_Thompson.12421	0	.	130287343	130288051	0	1	708	0
chr12	130312364	130312698	A549_Myers.33109	0	.	130312364	130312698	0	1	334	0
chr12	130314817	130315736	A549_Myers.33110	0	.	130314817	130315736	0	1	919	0
chr12	130317090	130317479	A549_Myers.33111	0	.	130317090	130317479	0	1	389	0
chr12	130346018	130348716	XR_078789	0	+	130346018	130348716	0	1	2698	0
chr12	130346018	130348716	XR_079315	0	+	130346018	130348716	0	2	547,2148	0,550
chr12	130346019	130348716	HIT000045912	0	+	130346019	130348716	0	1	2697	0
chr12	130346892	130347538	XR_078470	0	+	130346892	130347538	0	1	646	0
chr12	130378033	130378464	A549_Myers.33116	0	.	130378033	130378464	0	1	431	0
chr12	130395731	130396108	K562.19006	0	.	130395731	130396108	0	1	377	0
chr12	130397967	130418053	HIT000023353	0	+	130397967	130418053	0	4	192,217,1265,121	0,1858,18486,19965
chr12	130397967	130418053	ENST00000428272	0	+	130397967	130418053	0	4	192,217,1300,85	0,1858,18486,20001
chr12	130398264	130398752	A549_Myers.33117	0	.	130398264	130398752	0	1	488	0
chr12	130416516	130417017	HIT000334874	0	+	130416516	130417017	0	1	501	0
chr12	130416516	130417022	HIT000334872	0	+	130416516	130417022	0	1	506	0
chr12	130416521	130417022	XR_041445	0	+	130416521	130417022	0	1	501	0
chr12	130416648	130416979	A549_Myers.33121	0	.	130416648	130416979	0	1	331	0
chr12	130430788	130431326	A549_Myers.33122	0	.	130430788	130431326	0	1	538	0
chr12	130434443	130434870	A549_Myers.33124	0	.	130434443	130434870	0	1	427	0
chr12	130435861	130437005	BT20_Thompson.8887	0	.	130435861	130437005	0	1	1144	0
chr12	130453436	130453782	A549_Myers.33128	0	.	130453436	130453782	0	1	346	0
chr12	130473366	130473749	A549_Myers.33131	0	.	130473366	130473749	0	1	383	0
chr12	130481882	130482299	ZR751_Thompson.10118	0	.	130481882	130482299	0	1	417	0
chr12	130484759	130485673	H1_polyA+.47805	0	.	130484759	130485673	0	1	914	0
chr12	130485132	130485769	HeLa_polyA+_Chen.15193	0	.	130485132	130485769	0	1	637	0
chr12	130485251	130486881	K562.19009	0	.	130485251	130486881	0	1	1630	0
chr12	130498946	130499436	B_Cells_Pritchard.1395923	0	.	130498946	130499436	0	1	490	0
chr12	130502816	130503321	B_Cells_Pritchard.1395935	0	.	130502816	130503321	0	1	505	0
chr12	130502874	130503375	A549_Myers.33134	0	.	130502874	130503375	0	1	501	0
chr12	130505101	130505550	A549_Myers.33135	0	.	130505101	130505550	0	1	449	0
chr12	130505352	130505907	B_Cells_Pritchard.1395943	0	.	130505352	130505907	0	1	555	0
chr12	130506637	130507149	B_Cells_Pritchard.1395947	0	.	130506637	130507149	0	1	512	0
chr12	130507525	130508384	B_Cells_Pritchard.1395953	0	.	130507525	130508384	0	1	859	0
chr12	130517268	130517663	B_cells_Cheung.81103	0	.	130517268	130517663	0	1	395	0
chr12	130545335	130545791	A549_Myers.33137	0	.	130545335	130545791	0	1	456	0
chr12	130576322	130576726	A549_Myers.33138	0	.	130576322	130576726	0	1	404	0
chr12	130579716	130580036	A549_Myers.33140	0	.	130579716	130580036	0	1	320	0
chr12	130593379	130594139	A549_Myers.33142	0	.	130593379	130594139	0	1	760	0
chr12	130606363	130606694	A549_Myers.33143	0	.	130606363	130606694	0	1	331	0
chr12	130630581	130640410	K562.19035	0	-	130630581	130640410	0	5	231,41,733,575,140	0,609,1928,3001,9689
chr12	130632019	130634171	K562.19036	0	.	130632019	130634171	0	1	2152	0
chr12	130654601	130655001	B_Cells_Pritchard.1396377	0	.	130654601	130655001	0	1	400	0
chr12	130660983	130661624	B_Cells_Pritchard.1396473	0	.	130660983	130661624	0	1	641	0
chr12	130663414	130663809	K562.19026	0	.	130663414	130663809	0	1	395	0
chr12	130667442	130672622	B_Cells_Pritchard.1396617	0	+	130667442	130672622	0	2	3535,896	0,4284
chr12	130667513	130669471	H1_polyA+.47806	0	.	130667513	130669471	0	1	1958	0
chr12	130667565	130672641	K562.19033	0	.	130667565	130672641	0	1	5076	0
chr12	130667662	130668927	B_cells_Cheung.81105	0	.	130667662	130668927	0	1	1265	0
chr12	130668987	130670290	B_cells_Cheung.81106	0	.	130668987	130670290	0	1	1303	0
chr12	130669586	130670286	H1_polyA+.47807	0	.	130669586	130670286	0	1	700	0
chr12	130671296	130671726	B_Cells_Pritchard.1396623	0	+	130671296	130671726	0	1	430	0
chr12	130672076	130672402	A549_Myers.33151	0	.	130672076	130672402	0	1	326	0
chr12	130673758	130674754	K562.19029	0	.	130673758	130674754	0	1	996	0
chr12	130676201	130676728	K562.19032	0	.	130676201	130676728	0	1	527	0
chr12	130679248	130679702	A549_Myers.33153	0	.	130679248	130679702	0	1	454	0
chr12	130684512	130685615	H1_polyA+.47808	0	.	130684512	130685615	0	1	1103	0
chr12	130686841	130687426	H1_polyA+.47810	0	.	130686841	130687426	0	1	585	0
chr12	130724768	130725223	A549_Myers.33155	0	.	130724768	130725223	0	1	455	0
chr12	130733644	130734102	H1_polyA+.47814	0	.	130733644	130734102	0	1	458	0
chr12	130739808	130741444	H1_polyA+.47815	0	.	130739808	130741444	0	1	1636	0
chr12	130740788	130741461	B_Cells_Pritchard.1396679	0	.	130740788	130741461	0	1	673	0
chr12	130859454	130859827	B_cells_Cheung.81222	0	.	130859454	130859827	0	1	373	0
chr12	130862287	130862698	A549_Myers.33181	0	.	130862287	130862698	0	1	411	0
chr12	130867996	130869011	B_cells_Cheung.81225	0	.	130867996	130869011	0	1	1015	0
chr12	130874348	130875424	melanoma_Garraway_short_term_cultures.28174	0	.	130874348	130875424	0	1	1076	0
chr12	130874451	130875457	H1_polyA+.47877	0	.	130874451	130875457	0	1	1006	0
chr12	130875578	130876326	B_Cells_Pritchard.1397071	0	-	130875578	130876326	0	1	748	0
chr12	130875592	130877403	melanoma_Garraway_short_term_cultures.28175	0	.	130875592	130877403	0	1	1811	0
chr12	130876016	130876386	B_cells_Cheung.81226	0	.	130876016	130876386	0	1	370	0
chr12	130876458	130876944	H9_polyA+.18800	0	.	130876458	130876944	0	1	486	0
chr12	130876498	130877172	BT474_Burge_Thompson.13733	0	.	130876498	130877172	0	1	674	0
chr12	130876542	130877352	MCF7_Burge_Thompson.12424	0	.	130876542	130877352	0	1	810	0
chr12	130904235	130907444	melanoma_Garraway_short_term_cultures.28182	0	.	130904235	130907444	0	1	3209	0
chr12	130904259	130905841	MeWo_Garraway.14891	0	.	130904259	130905841	0	1	1582	0
chr12	130904401	130905697	A549_Myers.33199	0	.	130904401	130905697	0	1	1296	0
chr12	130904594	130905724	B_Cells_Pritchard.1397127	0	+	130904594	130905724	0	1	1130	0
chr12	130905866	130906994	A549_Myers.33200	0	.	130905866	130906994	0	1	1128	0
chr12	130905867	130906714	B_Cells_Pritchard.1396915	0	.	130905867	130906714	0	1	847	0
chr12	130906144	130907481	BT474_Burge_Thompson.13751	0	.	130906144	130907481	0	1	1337	0
chr12	130906206	130907353	MeWo_Garraway.14892	0	.	130906206	130907353	0	1	1147	0
chr12	130906542	130907474	H1_polyA+.47887	0	.	130906542	130907474	0	1	932	0
chr12	130906584	130906944	K562.19037	0	.	130906584	130906944	0	1	360	0
chr12	130906733	130907262	MCF7_Burge_Thompson.12436	0	.	130906733	130907262	0	1	529	0
chr12	130906861	130907216	B_Cells_Pritchard.1396917	0	.	130906861	130907216	0	1	355	0
chr12	130907859	130908292	A549_Myers.33201	0	.	130907859	130908292	0	1	433	0
chr12	130907957	130909433	BT474_Burge_Thompson.13752	0	.	130907957	130909433	0	1	1476	0
chr12	130908269	130909083	MB435_Burge.17812	0	.	130908269	130909083	0	1	814	0
chr12	130908611	130909444	MCF7_Burge_Thompson.12437	0	.	130908611	130909444	0	1	833	0
chr12	130908756	130909440	A549_Myers.33202	0	.	130908756	130909440	0	1	684	0
chr12	130909559	130913691	B_Cells_Pritchard.1396927	0	-	130909559	130913691	0	3	9,167,465	0,821,3667
chr12	130911003	130912974	H1_polyA+.47878	0	.	130911003	130912974	0	1	1971	0
chr12	130911583	130915032	HepG2_Caltech_ENCODE.14844	0	.	130911583	130915032	0	1	3449	0
chr12	130911654	130912845	BT474_Burge_Thompson.13753	0	.	130911654	130912845	0	1	1191	0
chr12	130912054	130912819	brain_AmbionMAQC.18175	0	.	130912054	130912819	0	1	765	0
chr12	130912063	130912959	A549_Myers.33203	0	.	130912063	130912959	0	1	896	0
chr12	130912115	130913683	melanoma_Garraway_short_term_cultures.28186	0	.	130912115	130913683	0	1	1568	0
chr12	130912171	130912519	B_Cells_Pritchard.1396939	0	-	130912171	130912519	0	1	348	0
chr12	130913006	130914945	BT474_Burge_Thompson.13754	0	+	130913006	130914945	0	2	637,500	0,1439
chr12	130913140	130913866	MCF7_Burge_Thompson.12440	0	.	130913140	130913866	0	1	726	0
chr12	130913140	130915108	MCF7_Burge_Thompson.12439	0	+	130913140	130915108	0	2	514,663	0,1305
chr12	130913550	130914819	H1_polyA+.47879	0	.	130913550	130914819	0	1	1269	0
chr12	130913803	130914889	melanoma_Garraway_short_term_cultures.28187	0	.	130913803	130914889	0	1	1086	0
chr12	130913960	130914859	B_Cells_Pritchard.1396949	0	.	130913960	130914859	0	1	899	0
chr12	130913963	130914945	BT474_Burge_Thompson.13755	0	.	130913963	130914945	0	1	982	0
chr12	130914144	130914906	A549_Myers.33205	0	.	130914144	130914906	0	1	762	0
chr12	130914345	130915108	MCF7_Burge_Thompson.12441	0	.	130914345	130915108	0	1	763	0
chr12	130914374	130914917	T47D_Burge_Thompson.12024	0	.	130914374	130914917	0	1	543	0
chr12	130918053	130919048	A549_Myers.33207	0	.	130918053	130919048	0	1	995	0
chr12	130922358	130922898	T47D_Burge_Thompson.12025	0	.	130922358	130922898	0	1	540	0
chr12	130934281	130935476	MCF7_Burge_Thompson.12427	0	.	130934281	130935476	0	1	1195	0
chr12	130934990	130935536	B_Cells_Pritchard.1397011	0	.	130934990	130935536	0	1	546	0
chr12	130943127	130944075	H1_polyA+.47880	0	.	130943127	130944075	0	1	948	0
chr12	130943507	130943973	B_cells_Cheung.81236	0	.	130943507	130943973	0	1	466	0
chr12	130943786	130944372	Rinn_00021010	0	-	130943786	130944372	0	2	287,29	0,557
chr12	130977843	130978559	CD4_Plagnol_activated.26788	0	.	130977843	130978559	0	1	716	0
chr12	130977888	130978369	brain_AmbionMAQC.18300	0	.	130977888	130978369	0	1	481	0
chr12	130978098	130978443	HeLa_polyA+_Chen.15202	0	.	130978098	130978443	0	1	345	0
chr12	131179082	131180185	ZR751_Thompson.10125	0	.	131179082	131180185	0	1	1103	0
chr12	131179102	131180046	MDAMB231_Thompson.9310	0	.	131179102	131180046	0	1	944	0
chr12	131179706	131180055	MB435_Burge.17818	0	.	131179706	131180055	0	1	349	0
chr12	131182139	131183517	prostate_carcinoma.43310	0	.	131182139	131183517	0	1	1378	0
chr12	131182961	131183651	A549_Myers.33241	0	.	131182961	131183651	0	1	690	0
chr12	131203435	131209608	REMC_LuminalBreast.42752	0	-	131203435	131209608	0	2	6055,27	0,6146
chr12	131203963	131204437	H1_polyA+.48719	0	.	131203963	131204437	0	1	474	0
chr12	131204210	131204801	MIP101.28431	0	.	131204210	131204801	0	1	591	0
chr12	131204287	131204827	CD4_Plagnol_activated.26533	0	.	131204287	131204827	0	1	540	0
chr12	131205079	131206260	MIP101.28432	0	.	131205079	131206260	0	1	1181	0
chr12	131205170	131207917	REMC_BreastStem.21523	0	.	131205170	131207917	0	1	2747	0
chr12	131205625	131206343	melanoma_Garraway_short_term_cultures.28246	0	.	131205625	131206343	0	1	718	0
chr12	131206037	131207936	brain_AmbionMAQC.18207	0	.	131206037	131207936	0	1	1899	0
chr12	131206427	131207915	HeLa_polyA+_Chen.15216	0	.	131206427	131207915	0	1	1488	0
chr12	131206570	131206962	B_cells_Cheung.81284	0	.	131206570	131206962	0	1	392	0
chr12	131206681	131207793	melanoma_Garraway_short_term_cultures.28247	0	.	131206681	131207793	0	1	1112	0
chr12	131206916	131207613	K562.19064	0	.	131206916	131207613	0	1	697	0
chr12	131207065	131207919	A549_Myers.33247	0	.	131207065	131207919	0	1	854	0
chr12	131207087	131207631	B_cells_Cheung.81285	0	.	131207087	131207631	0	1	544	0
chr12	131207582	131208201	Rinn_00020660	0	+	131207582	131208201	0	2	28,516	0,103
chr12	131208003	131208937	REMC_BreastStem.21524	0	.	131208003	131208937	0	1	934	0
chr12	131208027	131208752	BT474_Burge_Thompson.13762	0	.	131208027	131208752	0	1	725	0
chr12	131208045	131209974	B_Cells_Pritchard.1398377	0	-	131208045	131209974	0	1	1929	0
chr12	131208204	131208551	brain_AmbionMAQC.18208	0	.	131208204	131208551	0	1	347	0
chr12	131208219	131209220	melanoma_Garraway_short_term_cultures.28248	0	.	131208219	131209220	0	1	1001	0
chr12	131208227	131208604	K562.19065	0	.	131208227	131208604	0	1	377	0
chr12	131208301	131208608	B_cells_Cheung.81286	0	.	131208301	131208608	0	1	307	0
chr12	131208403	131209087	BT20_Thompson.8902	0	.	131208403	131209087	0	1	684	0
chr12	131208606	131209220	HeLa_polyA+_Chen.15217	0	.	131208606	131209220	0	1	614	0
chr12	131208616	131209725	CD4_Plagnol_resting.25621	0	.	131208616	131209725	0	1	1109	0
chr12	131208731	131209126	brain_AmbionMAQC.18209	0	.	131208731	131209126	0	1	395	0
chr12	131208928	131209708	A549_Myers.33249	0	.	131208928	131209708	0	1	780	0
chr12	131209534	131210295	prostate_normal.24273	0	.	131209534	131210295	0	1	761	0
chr12	131209715	131210498	brain_AmbionMAQC.18210	0	.	131209715	131210498	0	1	783	0
chr12	131210119	131212228	REMC_LuminalBreast.42753	0	.	131210119	131212228	0	1	2109	0
chr12	131210130	131213209	REMC_MyoepithelialBreast.40139	0	.	131210130	131213209	0	1	3079	0
chr12	131210144	131210844	MIP101.28433	0	.	131210144	131210844	0	1	700	0
chr12	131210177	131210741	CD4_Plagnol_activated.26534	0	.	131210177	131210741	0	1	564	0
chr12	131210469	131211099	H1_polyA+.47888	0	.	131210469	131211099	0	1	630	0
chr12	131210525	131211095	B_Cells_Pritchard.1398381	0	-	131210525	131211095	0	1	570	0
chr12	131210899	131211600	MIP101.28434	0	.	131210899	131211600	0	1	701	0
chr12	131211022	131211855	A549_Myers.33250	0	.	131211022	131211855	0	1	833	0
chr12	131211209	131211926	H1_polyA+.47889	0	.	131211209	131211926	0	1	717	0
chr12	131212120	131213100	H1_polyA+.47890	0	.	131212120	131213100	0	1	980	0
chr12	131212399	131213995	CD4_Plagnol_activated.26471	0	.	131212399	131213995	0	1	1596	0
chr12	131212415	131213466	REMC_LuminalBreast.42754	0	.	131212415	131213466	0	1	1051	0
chr12	131212577	131213454	A549_Myers.33251	0	.	131212577	131213454	0	1	877	0
chr12	131212577	131214760	prostate_carcinoma.43311	0	.	131212577	131214760	0	1	2183	0
chr12	131213203	131215334	H1_polyA+.47891	0	.	131213203	131215334	0	1	2131	0
chr12	131214129	131215329	REMC_LuminalBreast.42756	0	.	131214129	131215329	0	1	1200	0
chr12	131214138	131214819	CD4_Plagnol_activated.26472	0	.	131214138	131214819	0	1	681	0
chr12	131214240	131215273	REMC_MyoepithelialBreast.40140	0	.	131214240	131215273	0	1	1033	0
chr12	131216312	131216953	H1_polyA+.47892	0	.	131216312	131216953	0	1	641	0
chr12	131216409	131217003	REMC_MyoepithelialBreast.40141	0	.	131216409	131217003	0	1	594	0
chr12	131217213	131218918	prostate_carcinoma.43312	0	.	131217213	131218918	0	1	1705	0
chr12	131217244	131219667	H1_polyA+.47893	0	.	131217244	131219667	0	1	2423	0
chr12	131217269	131218542	REMC_MyoepithelialBreast.40142	0	.	131217269	131218542	0	1	1273	0
chr12	131217630	131218178	prostate_normal.24243	0	.	131217630	131218178	0	1	548	0
chr12	131217923	131218534	B_Cells_Pritchard.1397233	0	.	131217923	131218534	0	1	611	0
chr12	131218289	131218611	A549_Myers.33254	0	.	131218289	131218611	0	1	322	0
chr12	131221928	131241137	pHIT000022907	0	-	131221928	131241137	0	3	150,43,212	0,5899,18997
chr12	131222634	131222961	A549_Myers.33257	0	.	131222634	131222961	0	1	327	0
chr12	131223428	131223822	A549_Myers.33258	0	.	131223428	131223822	0	1	394	0
chr12	131226426	131226731	A549_Myers.33259	0	.	131226426	131226731	0	1	305	0
chr12	131230028	131230375	A549_Myers.33262	0	.	131230028	131230375	0	1	347	0
chr12	131230459	131230948	A549_Myers.33263	0	.	131230459	131230948	0	1	489	0
chr12	131231599	131232500	A549_Myers.33264	0	.	131231599	131232500	0	1	901	0
chr12	131232918	131233226	B_Cells_Pritchard.1397299	0	.	131232918	131233226	0	1	308	0
chr12	131236098	131240247	CD4_Plagnol_resting.25623	0	.	131236098	131240247	0	1	4149	0
chr12	131237081	131239443	REMC_LuminalBreast.42758	0	.	131237081	131239443	0	1	2362	0
chr12	131237108	131240215	CD4_Plagnol_activated.26473	0	.	131237108	131240215	0	1	3107	0
chr12	131237136	131240483	H1_polyA+.47894	0	-	131237136	131240483	0	2	1063,807	0,2540
chr12	131237136	131240483	H1_polyA+.47895	0	.	131237136	131240483	0	1	3347	0
chr12	131237173	131240246	prostate_carcinoma.43313	0	.	131237173	131240246	0	1	3073	0
chr12	131237222	131239022	CD4_Snyder.31882	0	.	131237222	131239022	0	1	1800	0
chr12	131237222	131238798	T47D_Burge_Thompson.12048	0	.	131237222	131238798	0	1	1576	0
chr12	131237242	131238712	BT474_Burge_Thompson.13766	0	.	131237242	131238712	0	1	1470	0
chr12	131237248	131240151	MIP101.28436	0	.	131237248	131240151	0	1	2903	0
chr12	131237259	131238387	B_cells_Cheung.81287	0	.	131237259	131238387	0	1	1128	0
chr12	131237259	131240246	prostate_carcinoma.43314	0	-	131237259	131240246	0	2	940,570	0,2417
chr12	131237280	131240251	B_Cells_Pritchard.1397315	0	-	131237280	131240251	0	2	1468,575	0,2396
chr12	131237292	131241238	brain_AmbionMAQC.18217	0	.	131237292	131241238	0	1	3946	0
chr12	131237292	131240310	MCF7_Burge_Thompson.12463	0	-	131237292	131240310	0	2	907,634	0,2384
chr12	131237292	131239540	MCF7_Burge_Thompson.12464	0	.	131237292	131239540	0	1	2248	0
chr12	131237300	131238265	MCF10A_Thompson.9130	0	.	131237300	131238265	0	1	965	0
chr12	131237591	131238610	melanoma_Garraway_short_term_cultures.28249	0	.	131237591	131238610	0	1	1019	0
chr12	131237779	131238626	HeLa_polyA+_Chen.15222	0	.	131237779	131238626	0	1	847	0
chr12	131238228	131240870	A549_Myers.33267	0	.	131238228	131240870	0	1	2642	0
chr12	131238324	131239577	H9_polyA+.18843	0	.	131238324	131239577	0	1	1253	0
chr12	131238439	131239025	B_cells_Cheung.81288	0	.	131238439	131239025	0	1	586	0
chr12	131238803	131240208	BT474_Burge_Thompson.13774	0	.	131238803	131240208	0	1	1405	0
chr12	131238991	131240203	T47D_Burge_Thompson.12049	0	.	131238991	131240203	0	1	1212	0
chr12	131239076	131240255	B_cells_Cheung.81289	0	.	131239076	131240255	0	1	1179	0
chr12	131239221	131240184	CD4_Snyder.31885	0	.	131239221	131240184	0	1	963	0
chr12	131239652	131240310	MCF7_Burge_Thompson.12465	0	.	131239652	131240310	0	1	658	0
chr12	131239680	131240176	HeLa_polyA+_Chen.15223	0	.	131239680	131240176	0	1	496	0
chr12	131239682	131240210	H9_polyA+.18844	0	.	131239682	131240210	0	1	528	0
chr12	131239733	131240131	H1_rRNA-depleted_UCSD_REMC.37224	0	.	131239733	131240131	0	1	398	0
chr12	131240874	131241964	B_Cells_Pritchard.1397325	0	.	131240874	131241964	0	1	1090	0
chr12	131240949	131241352	A549_Myers.33268	0	.	131240949	131241352	0	1	403	0
chr12	131241310	131241794	T47D_Burge_Thompson.12050	0	.	131241310	131241794	0	1	484	0
chr12	131242250	131243485	brain_AmbionMAQC.18219	0	.	131242250	131243485	0	1	1235	0
chr12	131416416	131419470	brain_AmbionMAQC.18919	0	+	131416416	131419470	0	2	1847,1102	0,1952
chr12	131416752	131419349	H1_polyA+.47906	0	+	131416752	131419349	0	2	115,1232	0,1365
chr12	131417111	131417493	A549_Myers.33327	0	.	131417111	131417493	0	1	382	0
chr12	131418073	131418909	HeLa_polyA+_Chen.15228	0	+	131418073	131418909	0	2	190,541	0,295
chr12	131419648	131421360	brain_AmbionMAQC.18921	0	.	131419648	131421360	0	1	1712	0
chr12	131419780	131420994	H1_polyA+.47907	0	.	131419780	131420994	0	1	1214	0
chr12	131542783	131543226	A549_Myers.33397	0	.	131542783	131543226	0	1	443	0
chr12	131545422	131556652	B_Cells_Pritchard.1397967	0	-	131545422	131556652	0	3	87,592,768	0,9229,10462
chr12	131548604	131549229	B_cells_Cheung.81296	0	.	131548604	131549229	0	1	625	0
chr12	131550207	131550579	B_cells_Cheung.81298	0	.	131550207	131550579	0	1	372	0
chr12	131550856	131551645	B_cells_Cheung.81299	0	.	131550856	131551645	0	1	789	0
chr12	131551007	131553974	B_Cells_Pritchard.1397991	0	+	131551007	131553974	0	1	2967	0
chr12	131551126	131553974	B_Cells_Pritchard.1397989	0	-	131551126	131553974	0	3	915,695,593	0,1198,2255
chr12	131554581	131556652	B_Cells_Pritchard.1397965	0	+	131554581	131556652	0	3	654,127,422	0,1360,1649
chr12	131557027	131557718	B_Cells_Pritchard.1398001	0	.	131557027	131557718	0	1	691	0
chr12	131558480	131558926	A549_Myers.33402	0	.	131558480	131558926	0	1	446	0
chr12	131560842	131561281	B_Cells_Pritchard.1398005	0	.	131560842	131561281	0	1	439	0
chr12	131560843	131561286	B_cells_Cheung.81302	0	.	131560843	131561286	0	1	443	0
chr12	131560868	131561315	A549_Myers.33403	0	.	131560868	131561315	0	1	447	0
chr12	131560883	131561253	prostate_carcinoma.41278	0	.	131560883	131561253	0	1	370	0
chr12	131562071	131563389	MCF7_Burge_Thompson.12471	0	.	131562071	131563389	0	1	1318	0
chr12	131562072	131564440	B_Cells_Pritchard.1398007	0	.	131562072	131564440	0	1	2368	0
chr12	131562093	131562775	prostate_carcinoma.41279	0	.	131562093	131562775	0	1	682	0
chr12	131562164	131562787	A549_Myers.33404	0	.	131562164	131562787	0	1	623	0
chr12	131563329	131563921	CD4_Plagnol_resting.25629	0	.	131563329	131563921	0	1	592	0
chr12	131563511	131564187	MCF7_Burge_Thompson.12472	0	.	131563511	131564187	0	1	676	0
chr12	131564321	131564696	MCF7_Burge_Thompson.12473	0	.	131564321	131564696	0	1	375	0
chr12	131565103	131570757	MCF7_Burge_Thompson.12474	0	.	131565103	131570757	0	1	5654	0
chr12	131565106	131566811	B_Cells_Pritchard.1398011	0	.	131565106	131566811	0	1	1705	0
chr12	131566700	131567133	A549_Myers.33408	0	.	131566700	131567133	0	1	433	0
chr12	131567965	131569448	B_cells_Cheung.81303	0	.	131567965	131569448	0	1	1483	0
chr12	131568171	131569375	B_Cells_Pritchard.1398019	0	.	131568171	131569375	0	1	1204	0
chr12	131568780	131569164	A549_Myers.33409	0	.	131568780	131569164	0	1	384	0
chr12	131571072	131573599	MCF7_Burge_Thompson.12475	0	.	131571072	131573599	0	1	2527	0
chr12	131571090	131574571	B_Cells_Pritchard.1398027	0	.	131571090	131574571	0	1	3481	0
chr12	131573671	131574344	B_cells_Cheung.81306	0	.	131573671	131574344	0	1	673	0
chr12	131573704	131574187	MCF7_Burge_Thompson.12476	0	.	131573704	131574187	0	1	483	0
chr12	131574691	131575857	B_cells_Cheung.81307	0	.	131574691	131575857	0	1	1166	0
chr12	131575292	131575630	A549_Myers.33411	0	.	131575292	131575630	0	1	338	0
chr12	131673867	131674450	A549_Myers.33464	0	.	131673867	131674450	0	1	583	0
chr12	131675066	131675976	prostate_carcinoma.41485	0	.	131675066	131675976	0	1	910	0
chr12	131679648	131681099	B_Cells_Pritchard.1398153	0	.	131679648	131681099	0	1	1451	0
chr12	131679703	131680386	prostate_carcinoma.41486	0	.	131679703	131680386	0	1	683	0
chr12	131679975	131680276	liver_polyA+.57016	0	.	131679975	131680276	0	1	301	0
chr12	131680157	131680828	melanoma_Garraway_short_term_cultures.28265	0	.	131680157	131680828	0	1	671	0
chr12	131680175	131680939	A549_Myers.33466	0	.	131680175	131680939	0	1	764	0
chr12	131680550	131681079	prostate_carcinoma.41487	0	.	131680550	131681079	0	1	529	0
chr12	131682406	131683137	A549_Myers.33470	0	.	131682406	131683137	0	1	731	0
chr12	131682584	131683295	B_Cells_Pritchard.1398161	0	.	131682584	131683295	0	1	711	0
chr12	131683966	131684624	B_Cells_Pritchard.1398165	0	.	131683966	131684624	0	1	658	0
chr12	131684066	131684609	prostate_normal.24308	0	.	131684066	131684609	0	1	543	0
chr12	131684189	131684609	B_cells_Cheung.81320	0	.	131684189	131684609	0	1	420	0
chr12	131687352	131688561	liver_polyA+.57018	0	.	131687352	131688561	0	1	1209	0
chr12	131698435	131699140	REMC_LuminalBreast.42784	0	.	131698435	131699140	0	1	705	0
chr12	131702035	131703254	REMC_LuminalBreast.42785	0	.	131702035	131703254	0	1	1219	0
chr12	131702107	131702477	A549_Myers.33478	0	.	131702107	131702477	0	1	370	0
chr12	131850365	131851578	B_cells_Cheung.99311	0	.	131850365	131851578	0	1	1213	0
chr12	131850370	131851538	H1_polyA+.47982	0	.	131850370	131851538	0	1	1168	0
chr12	131850393	131851420	REMC_LuminalBreast.43572	0	.	131850393	131851420	0	1	1027	0
chr12	131850941	131851550	prostate_carcinoma.45357	0	.	131850941	131851550	0	1	609	0
chr12	131850975	131851312	A549_Myers.33513	0	.	131850975	131851312	0	1	337	0
chr12	131851794	131853037	H1_polyA+.47983	0	.	131851794	131853037	0	1	1243	0
chr12	131851891	131853452	REMC_LuminalBreast.43573	0	.	131851891	131853452	0	1	1561	0
chr12	131852892	131853796	REMC_MyoepithelialBreast.40935	0	.	131852892	131853796	0	1	904	0
chr12	131853080	131853688	prostate_carcinoma.45358	0	.	131853080	131853688	0	1	608	0
chr12	131918191	131921395	B_Cells_Pritchard.1398395	0	+	131918191	131921395	0	2	2081,1027	0,2177
chr12	131919386	131919997	brain_AmbionMAQC.18439	0	.	131919386	131919997	0	1	611	0
chr12	131920275	131920758	REMC_LuminalBreast.43581	0	.	131920275	131920758	0	1	483	0
chr12	131920628	131921070	H9_polyA+.18907	0	.	131920628	131921070	0	1	442	0
chr12	131920754	131921377	brain_AmbionMAQC.18440	0	.	131920754	131921377	0	1	623	0
chr12	131923194	131924227	REMC_LuminalBreast.43583	0	.	131923194	131924227	0	1	1033	0
chr12	131923365	131924103	HIT000070592	0	-	131923365	131924103	0	1	738	0
chr12	131924311	131924876	brain_AmbionMAQC.18441	0	.	131924311	131924876	0	1	565	0
chr12	131924541	131925169	liver_polyA+.57194	0	.	131924541	131925169	0	1	628	0
chr12	131924859	131925899	REMC_LuminalBreast.43584	0	.	131924859	131925899	0	1	1040	0
chr12	131995373	132000953	ENST00000499045	0	+	131995373	132000953	0	3	434,214,1083	0,2279,4497
chr12	131995373	132000953	HIT000012571	0	+	131995373	132000953	0	3	434,214,1081	0,2279,4499
chr12	131997677	131999123	REMC_LuminalBreast.42830	0	.	131997677	131999123	0	1	1446	0
chr12	131998177	132001391	HIT000021637	0	+	131998177	132001391	0	2	1069,1637	0,1577
chr12	131998313	131998831	B_cells_Cheung.81348	0	.	131998313	131998831	0	1	518	0
chr12	131998318	131999096	H1_polyA+.47998	0	.	131998318	131999096	0	1	778	0
chr12	132004798	132006139	B_cells_Cheung.81353	0	.	132004798	132006139	0	1	1341	0
chr12	132044971	132045754	B_cells_Cheung.81362	0	.	132044971	132045754	0	1	783	0
chr12	132050147	132050545	B_cells_Cheung.81370	0	.	132050147	132050545	0	1	398	0
chr12	132052367	132054684	B_cells_Cheung.81374	0	.	132052367	132054684	0	1	2317	0
chr12	132052371	132056597	B_Cells_Pritchard.1398881	0	-	132052371	132056597	0	2	2182,111	0,4115
chr12	132052371	132054664	B_Cells_Pritchard.1398879	0	+	132052371	132054664	0	1	2293	0
chr12	132052388	132054107	prostate_carcinoma.41333	0	.	132052388	132054107	0	1	1719	0
chr12	132052406	132054059	prostate_normal.24325	0	.	132052406	132054059	0	1	1653	0
chr12	132052428	132053510	H1_polyA+.48013	0	.	132052428	132053510	0	1	1082	0
chr12	132052573	132053663	melanoma_Garraway_short_term_cultures.28345	0	.	132052573	132053663	0	1	1090	0
chr12	132054818	132055409	B_cells_Cheung.81375	0	.	132054818	132055409	0	1	591	0
chr12	132195558	132196659	B_cells_Cheung.81466	0	.	132195558	132196659	0	1	1101	0
chr12	132195839	132196656	T47D_Burge_Thompson.12101	0	.	132195839	132196656	0	1	817	0
chr12	132201985	132202889	BT474_Burge_Thompson.13883	0	.	132201985	132202889	0	1	904	0
chr12	132202020	132202820	T47D_Burge_Thompson.12103	0	.	132202020	132202820	0	1	800	0
chr12	132202038	132205155	REMC_BreastStem.21591	0	.	132202038	132205155	0	1	3117	0
chr12	132202064	132202845	melanoma_Garraway_short_term_cultures.28383	0	.	132202064	132202845	0	1	781	0
chr12	132202069	132202874	CD4_Plagnol_activated.26610	0	.	132202069	132202874	0	1	805	0
chr12	132202082	132204605	REMC_LuminalBreast.42897	0	.	132202082	132204605	0	1	2523	0
chr12	132202085	132202886	H9_polyA+.18948	0	.	132202085	132202886	0	1	801	0
chr12	132202085	132202804	NEC_from_H9.31647	0	.	132202085	132202804	0	1	719	0
chr12	132202135	132202956	B_cells_Cheung.81470	0	.	132202135	132202956	0	1	821	0
chr12	132202141	132202874	HepG2_Caltech_ENCODE.14941	0	.	132202141	132202874	0	1	733	0
chr12	132202162	132202800	prostate_carcinoma.41375	0	.	132202162	132202800	0	1	638	0
chr12	132202182	132202937	HeLa_polyA+_Chen.15325	0	.	132202182	132202937	0	1	755	0
chr12	132202240	132203946	K562.19215	0	.	132202240	132203946	0	1	1706	0
chr12	132202586	132205962	H9_polyA+.18949	0	+	132202586	132205962	0	2	10,1230	0,2146
chr12	132203021	132206079	B_cells_Cheung.81471	0	.	132203021	132206079	0	1	3058	0
chr12	132204183	132205961	T47D_Burge_Thompson.12105	0	.	132204183	132205961	0	1	1778	0
chr12	132204717	132206032	HeLa_polyA+_Chen.15326	0	.	132204717	132206032	0	1	1315	0
chr12	132204752	132205814	BT474_Burge_Thompson.13881	0	.	132204752	132205814	0	1	1062	0
chr12	132204754	132205939	melanoma_Garraway_short_term_cultures.28385	0	.	132204754	132205939	0	1	1185	0
chr12	132204863	132205557	CD4_Plagnol_activated.26613	0	.	132204863	132205557	0	1	694	0
chr12	132204864	132205976	K562.19217	0	.	132204864	132205976	0	1	1112	0
chr12	132204879	132205938	prostate_carcinoma.41372	0	.	132204879	132205938	0	1	1059	0
chr12	132204882	132205611	MIP101.28486	0	.	132204882	132205611	0	1	729	0
chr12	132204892	132205322	H1_rRNA-depleted_UCSD_REMC.37365	0	.	132204892	132205322	0	1	430	0
chr12	132204896	132205652	A549_Myers.33581	0	.	132204896	132205652	0	1	756	0
chr12	132204901	132205612	NEC_from_H9.31644	0	.	132204901	132205612	0	1	711	0
chr12	132204910	132205860	MCF7_Burge_Thompson.12561	0	.	132204910	132205860	0	1	950	0
chr12	132204936	132205463	prostate_normal.24350	0	.	132204936	132205463	0	1	527	0
chr12	132205109	132205876	CD4_Plagnol_resting.25747	0	.	132205109	132205876	0	1	767	0
chr12	132205250	132205704	liver_polyA+.57208	0	.	132205250	132205704	0	1	454	0
chr13	18082437	18083815	ENST00000412714	0	-	18082437	18083815	0	2	557,106	0,1272
chr13	18394027	18395905	Rinn_00021524	0	+	18394027	18395905	0	2	522,226	0,1652
chr13	18394028	18395905	ENST00000422082	0	+	18394028	18395905	0	2	521,225	0,1652
chr13	18414669	18416211	melanoma_Garraway_short_term_cultures.28397	0	.	18414669	18416211	0	1	1542	0
chr13	18414810	18417919	K562.19256	0	.	18414810	18417919	0	1	3109	0
chr13	18415165	18417335	MCF7_Burge_Thompson.12574	0	.	18415165	18417335	0	1	2170	0
chr13	18416353	18417266	melanoma_Garraway_short_term_cultures.28398	0	.	18416353	18417266	0	1	913	0
chr13	18418460	18430565	K562.19257	0	-	18418460	18430565	0	6	586,160,780,116,120,400	0,5349,5793,8607,9216,11705
chr13	18418786	18419139	MCF7_Burge_Thompson.12575	0	.	18418786	18419139	0	1	353	0
chr13	18423671	18425022	MCF7_Burge_Thompson.12576	0	-	18423671	18425022	0	2	298,362	0,989
chr13	18426318	18426872	K562.19259	0	.	18426318	18426872	0	1	554	0
chr13	18465508	18466861	K562.19266	0	.	18465508	18466861	0	1	1353	0
chr13	18466964	18467934	K562.19267	0	.	18466964	18467934	0	1	970	0
chr13	18468037	18469228	K562.19268	0	.	18468037	18469228	0	1	1191	0
chr13	18480386	18480717	testes_Burge.22102	0	.	18480386	18480717	0	1	331	0
chr13	18480397	18484774	Rinn_00021467	0	+	18480397	18484774	0	4	882,171,133,956	0,1015,3174,3421
chr13	18480398	18484157	HIT000496425	0	+	18480398	18484157	0	4	881,170,132,335	0,1015,3174,3424
chr13	18480398	18484792	HIT000262842	0	+	18480398	18484792	0	4	881,170,132,973	0,1015,3174,3421
chr13	18480398	18484774	NR_026852	0	+	18480398	18484774	0	4	881,170,132,955	0,1015,3174,3421
chr13	18480398	18484714	HIT000098581	0	+	18480398	18484714	0	4	881,170,132,895	0,1015,3174,3421
chr13	18480398	18484699	ENST00000456737	0	+	18480398	18484699	0	4	881,170,132,880	0,1015,3174,3421
chr13	18480398	18484703	HIT000335090	0	+	18480398	18484703	0	4	881,170,132,884	0,1015,3174,3421
chr13	18480402	18487338	Rinn_00021525	0	+	18480402	18487338	0	4	877,142,1156,118	0,1039,3169,6818
chr13	18480403	18487338	ENST00000428086	0	+	18480403	18487338	0	4	876,141,1155,117	0,1039,3169,6818
chr13	18480418	18484757	Rinn_00021706	0	+	18480418	18484757	0	4	861,142,133,936	0,1023,3153,3403
chr13	18480433	18484637	Rinn_00021707	0	+	18480433	18484637	0	4	846,142,133,819	0,1008,3138,3385
chr13	18492891	18493686	K562.19270	0	.	18492891	18493686	0	1	795	0
chr13	18618720	18619501	K562.19254	0	.	18618720	18619501	0	1	781	0
chr13	19268070	19269746	B_cells_Cheung.81658	0	.	19268070	19269746	0	1	1676	0
chr13	19270761	19271956	B_cells_Cheung.81660	0	.	19270761	19271956	0	1	1195	0
chr13	19270826	19271884	H1_polyA+.48270	0	.	19270826	19271884	0	1	1058	0
chr13	19281166	19281493	B_cells_Cheung.81675	0	.	19281166	19281493	0	1	327	0
chr13	19282321	19282941	B_cells_Cheung.81678	0	.	19282321	19282941	0	1	620	0
chr13	19283007	19285159	B_cells_Cheung.81679	0	.	19283007	19285159	0	1	2152	0
chr13	19284591	19284893	CD4_Plagnol_activated.26762	0	.	19284591	19284893	0	1	302	0
chr13	19284651	19285170	REMC_MyoepithelialBreast.40309	0	.	19284651	19285170	0	1	519	0
chr13	19284663	19285050	REMC_LuminalBreast.43030	0	.	19284663	19285050	0	1	387	0
chr13	19286927	19287667	REMC_LuminalBreast.43032	0	.	19286927	19287667	0	1	740	0
chr13	19287055	19287645	B_cells_Cheung.81682	0	.	19287055	19287645	0	1	590	0
chr13	19287084	19287635	melanoma_Garraway_short_term_cultures.28442	0	.	19287084	19287635	0	1	551	0
chr13	19287153	19288008	REMC_MyoepithelialBreast.40311	0	.	19287153	19288008	0	1	855	0
chr13	19287263	19287621	MIP101.28582	0	.	19287263	19287621	0	1	358	0
chr13	19349353	19349966	B_cells_Cheung.81727	0	.	19349353	19349966	0	1	613	0
chr13	19429448	19430213	pHIT000022979	0	-	19429448	19430213	0	1	765	0
chr13	19564770	19566283	HIT000014372	0	-	19564770	19566283	0	1	1513	0
chr13	19577206	19601088	pHIT000022982	0	-	19577206	19601088	0	4	227,100,196,185	0,674,13360,23697
chr13	19590302	19591074	prostate_carcinoma.41492	0	.	19590302	19591074	0	1	772	0
chr13	19590566	19601088	pHIT000086689	0	-	19590566	19601088	0	2	196,185	0,10337
chr13	19598734	19600240	B_Cells_Pritchard.1402343	0	.	19598734	19600240	0	1	1506	0
chr13	19599017	19610058	pHIT000112509	0	+	19599017	19610058	0	3	41,128,362	0,4689,10679
chr13	19600377	19600688	B_Cells_Pritchard.1402345	0	.	19600377	19600688	0	1	311	0
chr13	19600480	19601108	BT474_Burge_Thompson.13942	0	.	19600480	19601108	0	1	628	0
chr13	19600487	19601111	MCF7_Burge_Thompson.12635	0	.	19600487	19601111	0	1	624	0
chr13	19744684	19745260	B_Cells_Pritchard.1402747	0	.	19744684	19745260	0	1	576	0
chr13	19864532	19864953	B_Cells_Pritchard.1403063	0	.	19864532	19864953	0	1	421	0
chr13	19865059	19866575	B_Cells_Pritchard.1403065	0	.	19865059	19866575	0	1	1516	0
chr13	20016306	20016833	B_cells_Cheung.81787	0	.	20016306	20016833	0	1	527	0
chr13	20016363	20017100	B_Cells_Pritchard.1403521	0	.	20016363	20017100	0	1	737	0
chr13	20030685	20033446	REMC_MyoepithelialBreast.40337	0	.	20030685	20033446	0	1	2761	0
chr13	20031227	20033066	REMC_LuminalBreast.42976	0	.	20031227	20033066	0	1	1839	0
chr13	20036444	20037713	Rinn_00021926	0	-	20036444	20037713	0	2	703,75	0,1194
chr13	20036470	20037618	B_cells_Cheung.81789	0	.	20036470	20037618	0	1	1148	0
chr13	20036492	20037356	REMC_BreastStem.21638	0	.	20036492	20037356	0	1	864	0
chr13	20172320	20172659	B_Cells_Pritchard.1403981	0	-	20172320	20172659	0	1	339	0
chr13	20954330	20955026	REMC_MyoepithelialBreast.40451	0	.	20954330	20955026	0	1	696	0
chr13	20958159	20958903	REMC_MyoepithelialBreast.40453	0	.	20958159	20958903	0	1	744	0
chr13	20958188	20958844	B_cells_Cheung.82088	0	.	20958188	20958844	0	1	656	0
chr13	20962756	20963402	B_cells_Cheung.82091	0	.	20962756	20963402	0	1	646	0
chr13	21178317	21178878	brain_AmbionMAQC.18446	0	.	21178317	21178878	0	1	561	0
chr13	21210032	21211823	prostate_carcinoma.41715	0	.	21210032	21211823	0	1	1791	0
chr13	21351394	21356823	pHIT000112524	0	+	21351394	21356823	0	3	42,168,133	0,453,5296
chr13	21442937	21444140	B_Cells_Pritchard.1407133	0	+	21442937	21444140	0	1	1203	0
chr13	21443165	21444028	MCF7_Burge_Thompson.12681	0	.	21443165	21444028	0	1	863	0
chr13	21443182	21444154	BT474_Burge_Thompson.13980	0	.	21443182	21444154	0	1	972	0
chr13	21512946	21513568	B_Cells_Pritchard.1407327	0	.	21512946	21513568	0	1	622	0
chr13	21512991	21513534	CD4_Snyder.32320	0	.	21512991	21513534	0	1	543	0
chr13	21513015	21513525	CD4_Plagnol_resting.26013	0	.	21513015	21513525	0	1	510	0
chr13	21513065	21513526	B_cells_Cheung.82113	0	.	21513065	21513526	0	1	461	0
chr13	21513111	21513520	CD4_Plagnol_activated.26956	0	.	21513111	21513520	0	1	409	0
chr13	21513125	21513540	K562.19388	0	.	21513125	21513540	0	1	415	0
chr13	21513145	21513527	H9_polyA+.19098	0	.	21513145	21513527	0	1	382	0
chr13	21513915	21514349	H1_rRNA-depleted_UCSD_REMC.37580	0	.	21513915	21514349	0	1	434	0
chr13	21551756	21555645	B_Cells_Pritchard.1407459	0	.	21551756	21555645	0	1	3889	0
chr13	21554252	21555793	B_cells_Cheung.82131	0	.	21554252	21555793	0	1	1541	0
chr13	21559323	21559831	B_cells_Cheung.82135	0	.	21559323	21559831	0	1	508	0
chr13	21562523	21563387	B_cells_Cheung.82136	0	.	21562523	21563387	0	1	864	0
chr13	21562542	21563359	B_Cells_Pritchard.1407485	0	.	21562542	21563359	0	1	817	0
chr13	21577070	21577656	B_Cells_Pritchard.1407545	0	.	21577070	21577656	0	1	586	0
chr13	21589200	21590035	B_Cells_Pritchard.1407583	0	.	21589200	21590035	0	1	835	0
chr13	21599519	21599967	B_Cells_Pritchard.1407635	0	.	21599519	21599967	0	1	448	0
chr13	21614408	21615341	B_Cells_Pritchard.1407709	0	.	21614408	21615341	0	1	933	0
chr13	21614444	21615201	B_cells_Cheung.82154	0	.	21614444	21615201	0	1	757	0
chr13	21615618	21615965	B_Cells_Pritchard.1407713	0	.	21615618	21615965	0	1	347	0
chr13	21620573	21622137	B_Cells_Pritchard.1407731	0	.	21620573	21622137	0	1	1564	0
chr13	21625723	21630202	B_Cells_Pritchard.1407775	0	+	21625723	21630202	0	2	2007,2054	0,2425
chr13	21628094	21630095	B_cells_Cheung.82167	0	.	21628094	21630095	0	1	2001	0
chr13	21646644	21648004	B_cells_Cheung.82170	0	.	21646644	21648004	0	1	1360	0
chr13	21646721	21647300	B_Cells_Pritchard.1407809	0	.	21646721	21647300	0	1	579	0
chr13	21650209	21650549	B_cells_Cheung.82175	0	.	21650209	21650549	0	1	340	0
chr13	21661836	21662449	B_Cells_Pritchard.1407867	0	.	21661836	21662449	0	1	613	0
chr13	21667899	21671449	B_cells_Cheung.82190	0	.	21667899	21671449	0	1	3550	0
chr13	21675390	21677364	B_cells_Cheung.82194	0	.	21675390	21677364	0	1	1974	0
chr13	21678443	21680972	B_Cells_Pritchard.1407915	0	.	21678443	21680972	0	1	2529	0
chr13	21683443	21684499	B_cells_Cheung.82182	0	.	21683443	21684499	0	1	1056	0
chr13	21683709	21684430	B_Cells_Pritchard.1407921	0	.	21683709	21684430	0	1	721	0
chr13	21724654	21725121	B_cells_Cheung.82199	0	.	21724654	21725121	0	1	467	0
chr13	21733883	21734874	B_Cells_Pritchard.1408153	0	.	21733883	21734874	0	1	991	0
chr13	21746659	21748712	CD4_Plagnol_activated.26970	0	.	21746659	21748712	0	1	2053	0
chr13	21767890	21769611	H1_polyA+.48503	0	.	21767890	21769611	0	1	1721	0
chr13	21813712	21814668	H1_polyA+.48509	0	.	21813712	21814668	0	1	956	0
chr13	21865235	21865842	B_Cells_Pritchard.1408537	0	.	21865235	21865842	0	1	607	0
chr13	21929347	21931404	H1_polyA+.48514	0	.	21929347	21931404	0	1	2057	0
chr13	21931116	21932108	B_Cells_Pritchard.1408677	0	.	21931116	21932108	0	1	992	0
chr13	21942775	21944408	H1_polyA+.48521	0	.	21942775	21944408	0	1	1633	0
chr13	21954233	21956158	H1_polyA+.48524	0	.	21954233	21956158	0	1	1925	0
chr13	21995302	21996483	H1_polyA+.48529	0	.	21995302	21996483	0	1	1181	0
chr13	22345074	22345402	brain_AmbionMAQC.18463	0	.	22345074	22345402	0	1	328	0
chr13	22358068	22358374	B_cells_Cheung.82227	0	.	22358068	22358374	0	1	306	0
chr13	22360028	22360364	B_cells_Cheung.82231	0	.	22360028	22360364	0	1	336	0
chr13	22372619	22372941	B_cells_Cheung.82244	0	.	22372619	22372941	0	1	322	0
chr13	22373032	22374375	B_cells_Cheung.82245	0	.	22373032	22374375	0	1	1343	0
chr13	22376472	22380157	B_cells_Cheung.82248	0	.	22376472	22380157	0	1	3685	0
chr13	22398255	22405449	Rinn_00021720	0	+	22398255	22405449	0	3	33,77,192	0,5952,7002
chr13	22398629	22399407	B_Cells_Pritchard.1409747	0	.	22398629	22399407	0	1	778	0
chr13	22398637	22399795	MCF7_Burge_Thompson.12706	0	.	22398637	22399795	0	1	1158	0
chr13	22398694	22399091	H1_polyA+.48573	0	.	22398694	22399091	0	1	397	0
chr13	22398700	22407087	Rinn_00021721	0	+	22398700	22407087	0	3	173,77,1518	0,5507,6869
chr13	22398709	22399088	B_cells_Cheung.82265	0	.	22398709	22399088	0	1	379	0
chr13	22398769	22399441	BT474_Burge_Thompson.13985	0	.	22398769	22399441	0	1	672	0
chr13	22399333	22400006	H1_polyA+.48574	0	.	22399333	22400006	0	1	673	0
chr13	22405659	22408166	MCF7_Burge_Thompson.12707	0	.	22405659	22408166	0	1	2507	0
chr13	22405662	22407200	H1_polyA+.48577	0	.	22405662	22407200	0	1	1538	0
chr13	22405668	22407267	BT474_Burge_Thompson.13986	0	.	22405668	22407267	0	1	1599	0
chr13	22405689	22406595	prostate_normal.24484	0	.	22405689	22406595	0	1	906	0
chr13	22405854	22406408	B_Cells_Pritchard.1409777	0	.	22405854	22406408	0	1	554	0
chr13	22406211	22406539	brain_AmbionMAQC.18465	0	.	22406211	22406539	0	1	328	0
chr13	22410516	22413229	MCF7_Burge_Thompson.12702	0	.	22410516	22413229	0	1	2713	0
chr13	22415069	22417128	MCF7_Burge_Thompson.12705	0	.	22415069	22417128	0	1	2059	0
chr13	22432931	22433411	MCF7_Burge_Thompson.12716	0	.	22432931	22433411	0	1	480	0
chr13	22434762	22435208	MCF7_Burge_Thompson.12718	0	.	22434762	22435208	0	1	446	0
chr13	22436476	22437748	MCF7_Burge_Thompson.12719	0	.	22436476	22437748	0	1	1272	0
chr13	22448008	22449904	Rinn_00021939	0	-	22448008	22449904	0	2	191,268	0,1628
chr13	22632069	22632385	testes_Burge.22223	0	.	22632069	22632385	0	1	316	0
chr13	22938011	22958590	Rinn_00022142	0	+	22938011	22958590	0	4	70,151,178,218	0,145,4640,20361
chr13	22938460	22939091	B_Cells_Pritchard.1410745	0	.	22938460	22939091	0	1	631	0
chr13	22938487	22939119	B_cells_Cheung.82284	0	.	22938487	22939119	0	1	632	0
chr13	22938566	22940132	prostate_carcinoma.41751	0	.	22938566	22940132	0	1	1566	0
chr13	22938577	22940049	BT474_Burge_Thompson.13995	0	.	22938577	22940049	0	1	1472	0
chr13	22941649	22959602	Rinn_00021480	0	+	22941649	22959602	0	3	681,178,1230	0,1002,16723
chr13	22958393	22959346	H1_polyA+.48592	0	.	22958393	22959346	0	1	953	0
chr13	22970933	22975013	Rinn_00021530	0	+	22970933	22975013	0	2	48,506	0,3574
chr13	22970934	22975013	ENST00000425800	0	+	22970934	22975013	0	2	47,505	0,3574
chr13	23029189	23031151	melanoma_Garraway_short_term_cultures.28629	0	.	23029189	23031151	0	1	1962	0
chr13	23154019	23155666	prostate_carcinoma.42220	0	.	23154019	23155666	0	1	1647	0
chr13	23154164	23154688	prostate_normal.24508	0	.	23154164	23154688	0	1	524	0
chr13	23167109	23169352	prostate_carcinoma.42228	0	.	23167109	23169352	0	1	2243	0
chr13	23168143	23169325	B_Cells_Pritchard.1411425	0	.	23168143	23169325	0	1	1182	0
chr13	23168341	23169062	prostate_normal.24510	0	.	23168341	23169062	0	1	721	0
chr13	23172127	23175640	prostate_carcinoma.42231	0	.	23172127	23175640	0	1	3513	0
chr13	23172135	23174252	prostate_normal.24511	0	.	23172135	23174252	0	1	2117	0
chr13	23174737	23175941	prostate_normal.24512	0	.	23174737	23175941	0	1	1204	0
chr13	23176769	23179324	prostate_carcinoma.42233	0	.	23176769	23179324	0	1	2555	0
chr13	23182675	23183596	prostate_normal.24520	0	.	23182675	23183596	0	1	921	0
chr13	23185735	23186050	prostate_normal.24516	0	.	23185735	23186050	0	1	315	0
chr13	23185819	23186834	BT474_Burge_Thompson.13996	0	.	23185819	23186834	0	1	1015	0
chr13	23186133	23187083	prostate_normal.24521	0	.	23186133	23187083	0	1	950	0
chr13	23186156	23186888	B_Cells_Pritchard.1411453	0	.	23186156	23186888	0	1	732	0
chr13	23187281	23188434	prostate_normal.24522	0	.	23187281	23188434	0	1	1153	0
chr13	23188494	23200141	prostate_normal.24519	0	-	23188494	23200141	0	2	128,6682	0,4965
chr13	23191617	23192740	prostate_normal.24523	0	.	23191617	23192740	0	1	1123	0
chr13	23193307	23200547	prostate_carcinoma.42237	0	-	23193307	23200547	0	2	6858,214	0,7026
chr13	23193378	23193896	MCF7_Burge_Thompson.12741	0	.	23193378	23193896	0	1	518	0
chr13	23376091	23376976	BT20_Thompson.9115	0	.	23376091	23376976	0	1	885	0
chr13	23407161	23409251	BT20_Thompson.9121	0	.	23407161	23409251	0	1	2090	0
chr13	23410888	23413238	BT20_Thompson.9122	0	.	23410888	23413238	0	1	2350	0
chr13	23419906	23420240	testes_Burge.22249	0	.	23419906	23420240	0	1	334	0
chr13	23421563	23422050	B_Cells_Pritchard.1412049	0	.	23421563	23422050	0	1	487	0
chr13	23423363	23425097	K562.19421	0	.	23423363	23425097	0	1	1734	0
chr13	23425218	23425687	K562.19422	0	.	23425218	23425687	0	1	469	0
chr13	23449660	23452399	REMC_MyoepithelialBreast.40494	0	.	23449660	23452399	0	1	2739	0
chr13	23449660	23490291	REMC_MyoepithelialBreast.40493	0	+	23449660	23490291	0	3	2403,1938,486	0,6205,40145
chr13	23451647	23452065	prostate_carcinoma.41760	0	.	23451647	23452065	0	1	418	0
chr13	23451749	23452314	B_cells_Cheung.82352	0	.	23451749	23452314	0	1	565	0
chr13	23451753	23452121	A549_Myers.33768	0	.	23451753	23452121	0	1	368	0
chr13	23455360	23459130	REMC_LuminalBreast.43215	0	.	23455360	23459130	0	1	3770	0
chr13	23461439	23462759	REMC_MyoepithelialBreast.40499	0	.	23461439	23462759	0	1	1320	0
chr13	23463284	23464094	REMC_MyoepithelialBreast.40500	0	.	23463284	23464094	0	1	810	0
chr13	23464197	23466030	REMC_MyoepithelialBreast.40501	0	.	23464197	23466030	0	1	1833	0
chr13	23482307	23483257	REMC_MyoepithelialBreast.40508	0	.	23482307	23483257	0	1	950	0
chr13	23484422	23486569	REMC_MyoepithelialBreast.40509	0	.	23484422	23486569	0	1	2147	0
chr13	23488375	23490291	REMC_MyoepithelialBreast.40495	0	.	23488375	23490291	0	1	1916	0
chr13	23497177	23498749	REMC_LuminalBreast.43227	0	.	23497177	23498749	0	1	1572	0
chr13	23505443	23506325	REMC_BreastStem.21761	0	.	23505443	23506325	0	1	882	0
chr13	23510354	23513861	REMC_LuminalBreast.43231	0	.	23510354	23513861	0	1	3507	0
chr13	23510430	23513612	REMC_MyoepithelialBreast.40533	0	.	23510430	23513612	0	1	3182	0
chr13	23512175	23512944	prostate_carcinoma.41765	0	.	23512175	23512944	0	1	769	0
chr13	23513715	23517152	REMC_MyoepithelialBreast.40534	0	.	23513715	23517152	0	1	3437	0
chr13	23515071	23515883	prostate_carcinoma.41766	0	.	23515071	23515883	0	1	812	0
chr13	23515103	23515922	REMC_LuminalBreast.43232	0	.	23515103	23515922	0	1	819	0
chr13	23516051	23516436	B_Cells_Pritchard.1412389	0	.	23516051	23516436	0	1	385	0
chr13	23521583	23522246	REMC_MyoepithelialBreast.40541	0	.	23521583	23522246	0	1	663	0
chr13	23527572	23528973	REMC_LuminalBreast.43236	0	.	23527572	23528973	0	1	1401	0
chr13	23535038	23535421	B_cells_Cheung.82360	0	.	23535038	23535421	0	1	383	0
chr13	23540073	23542406	REMC_LuminalBreast.43239	0	.	23540073	23542406	0	1	2333	0
chr13	23543995	23549032	REMC_LuminalBreast.43240	0	.	23543995	23549032	0	1	5037	0
chr13	23548596	23553688	REMC_MyoepithelialBreast.40553	0	.	23548596	23553688	0	1	5092	0
chr13	23548645	23549115	B_cells_Cheung.82362	0	.	23548645	23549115	0	1	470	0
chr13	23548688	23550454	B_Cells_Pritchard.1412655	0	.	23548688	23550454	0	1	1766	0
chr13	23552735	23553713	REMC_LuminalBreast.43242	0	.	23552735	23553713	0	1	978	0
chr13	23553852	23554636	REMC_MyoepithelialBreast.40550	0	.	23553852	23554636	0	1	784	0
chr13	23553889	23554368	B_Cells_Pritchard.1412675	0	.	23553889	23554368	0	1	479	0
chr13	23567162	23568631	REMC_LuminalBreast.43248	0	.	23567162	23568631	0	1	1469	0
chr13	23569269	23570600	REMC_LuminalBreast.43249	0	.	23569269	23570600	0	1	1331	0
chr13	23572344	23574257	REMC_LuminalBreast.43250	0	.	23572344	23574257	0	1	1913	0
chr13	23576143	23577534	REMC_LuminalBreast.43251	0	.	23576143	23577534	0	1	1391	0
chr13	23578601	23580634	B_Cells_Pritchard.1412785	0	.	23578601	23580634	0	1	2033	0
chr13	23581726	23583147	REMC_LuminalBreast.43253	0	.	23581726	23583147	0	1	1421	0
chr13	23581788	23582670	REMC_MyoepithelialBreast.40563	0	.	23581788	23582670	0	1	882	0
chr13	23592453	23593422	REMC_LuminalBreast.43255	0	.	23592453	23593422	0	1	969	0
chr13	23621049	23622104	REMC_LuminalBreast.43260	0	.	23621049	23622104	0	1	1055	0
chr13	23621803	23622580	A549_Myers.33778	0	.	23621803	23622580	0	1	777	0
chr13	23812216	23813458	B_Cells_Pritchard.1413573	0	.	23812216	23813458	0	1	1242	0
chr13	23837435	23864298	pHIT000112535	0	-	23837435	23864298	0	4	166,68,171,189	0,24176,25218,26674
chr13	24085531	24086293	B_Cells_Pritchard.1414005	0	.	24085531	24086293	0	1	762	0
chr13	24121139	24121700	B_Cells_Pritchard.1414135	0	.	24121139	24121700	0	1	561	0
chr13	24123994	24124887	BT474_Burge_Thompson.14021	0	.	24123994	24124887	0	1	893	0
chr13	24587114	24591316	pHIT000023025	0	+	24587114	24591316	0	3	160,58,232	0,1981,3970
chr13	24589349	24591540	Rinn_00021734	0	+	24589349	24591540	0	3	86,184,579	0,1308,1612
chr13	24624497	24624952	brain_AmbionMAQC.18530	0	.	24624497	24624952	0	1	455	0
chr13	24645014	24646875	B_cells_Cheung.82579	0	-	24645014	24646875	0	2	446,825	0,1036
chr13	24654288	24654709	B_cells_Cheung.82586	0	.	24654288	24654709	0	1	421	0
chr13	24664228	24664648	B_cells_Cheung.82588	0	.	24664228	24664648	0	1	420	0
chr13	24664255	24665416	B_Cells_Pritchard.1415551	0	.	24664255	24665416	0	1	1161	0
chr13	24665113	24665568	B_cells_Cheung.82590	0	.	24665113	24665568	0	1	455	0
chr13	25882538	25883458	B_Cells_Pritchard.1418779	0	.	25882538	25883458	0	1	920	0
chr13	25882607	25884268	REMC_MyoepithelialBreast.40668	0	.	25882607	25884268	0	1	1661	0
chr13	25895408	25896366	REMC_MyoepithelialBreast.40655	0	.	25895408	25896366	0	1	958	0
chr13	25909556	25910617	REMC_MyoepithelialBreast.40657	0	.	25909556	25910617	0	1	1061	0
chr13	25956364	25957035	prostate_carcinoma.41905	0	.	25956364	25957035	0	1	671	0
chr13	25957482	25957954	prostate_carcinoma.41906	0	.	25957482	25957954	0	1	472	0
chr13	25958401	25962504	prostate_carcinoma.41907	0	.	25958401	25962504	0	1	4103	0
chr13	25958401	25971448	prostate_carcinoma.41908	0	-	25958401	25971448	0	3	3147,636,257	0,4393,12790
chr13	26219625	26221191	MIP101.28879	0	.	26219625	26221191	0	1	1566	0
chr13	26219703	26220472	brain_AmbionMAQC.18574	0	.	26219703	26220472	0	1	769	0
chr13	26324038	26327176	MIP101.28887	0	+	26324038	26327176	0	2	687,1605	0,1533
chr13	26324038	26327176	MIP101.28888	0	.	26324038	26327176	0	1	3138	0
chr13	26459346	26461157	REMC_LuminalBreast.43415	0	.	26459346	26461157	0	1	1811	0
chr13	26467074	26471884	pHIT000112560	0	-	26467074	26471884	0	2	176,151	0,4659
chr13	26467226	26468886	REMC_LuminalBreast.43416	0	.	26467226	26468886	0	1	1660	0
chr13	26476004	26477642	REMC_LuminalBreast.43419	0	.	26476004	26477642	0	1	1638	0
chr13	26479292	26480529	REMC_LuminalBreast.43420	0	.	26479292	26480529	0	1	1237	0
chr13	26486102	26487152	REMC_LuminalBreast.43424	0	.	26486102	26487152	0	1	1050	0
chr13	26490381	26491445	REMC_LuminalBreast.43426	0	.	26490381	26491445	0	1	1064	0
chr13	26490503	26491639	REMC_BreastStem.21869	0	.	26490503	26491639	0	1	1136	0
chr13	26492319	26494071	REMC_BreastStem.21870	0	.	26492319	26494071	0	1	1752	0
chr13	26492409	26494050	REMC_LuminalBreast.43428	0	.	26492409	26494050	0	1	1641	0
chr13	26493055	26494096	REMC_MyoepithelialBreast.40699	0	.	26493055	26494096	0	1	1041	0
chr13	26494103	26498193	REMC_LuminalBreast.43429	0	.	26494103	26498193	0	1	4090	0
chr13	26498784	26499864	REMC_BreastStem.21871	0	.	26498784	26499864	0	1	1080	0
chr13	26499641	26503210	REMC_LuminalBreast.43431	0	.	26499641	26503210	0	1	3569	0
chr13	26511181	26512597	REMC_MyoepithelialBreast.40706	0	.	26511181	26512597	0	1	1416	0
chr13	26511291	26511792	B_Cells_Pritchard.1420609	0	.	26511291	26511792	0	1	501	0
chr13	26668263	26668609	B_Cells_Pritchard.1421021	0	.	26668263	26668609	0	1	346	0
chr13	26671265	26671726	B_cells_Cheung.82815	0	.	26671265	26671726	0	1	461	0
chr13	26673184	26674658	MIP101.28906	0	.	26673184	26674658	0	1	1474	0
chr13	26673190	26675061	H1_polyA+.48925	0	.	26673190	26675061	0	1	1871	0
chr13	26673206	26675096	B_cells_Cheung.82810	0	.	26673206	26675096	0	1	1890	0
chr13	26673219	26675072	prostate_carcinoma.41948	0	.	26673219	26675072	0	1	1853	0
chr13	26673219	26685043	prostate_carcinoma.41949	0	+	26673219	26685043	0	2	1561,73	0,11751
chr13	26673467	26674430	prostate_normal.24646	0	.	26673467	26674430	0	1	963	0
chr13	26675740	26677928	H1_polyA+.48926	0	.	26675740	26677928	0	1	2188	0
chr13	26676749	26677928	B_cells_Cheung.82817	0	.	26676749	26677928	0	1	1179	0
chr13	26676781	26677729	prostate_carcinoma.41951	0	.	26676781	26677729	0	1	948	0
chr13	26676857	26678344	REMC_LuminalBreast.43439	0	.	26676857	26678344	0	1	1487	0
chr13	26676905	26677459	MIP101.28908	0	.	26676905	26677459	0	1	554	0
chr13	26681760	26682631	B_cells_Cheung.82803	0	.	26681760	26682631	0	1	871	0
chr13	26683754	26684722	B_cells_Cheung.82805	0	.	26683754	26684722	0	1	968	0
chr13	26683996	26684495	B_Cells_Pritchard.1421035	0	-	26683996	26684495	0	1	499	0
chr13	26692847	26693895	H1_polyA+.48932	0	.	26692847	26693895	0	1	1048	0
chr13	26693409	26694202	B_cells_Cheung.82825	0	.	26693409	26694202	0	1	793	0
chr13	26698505	26707373	B_Cells_Pritchard.1421157	0	+	26698505	26707373	0	5	4249,454,917,994,1159	0,4513,5544,6516,7709
chr13	26709740	26711862	B_cells_Cheung.82840	0	.	26709740	26711862	0	1	2122	0
chr13	26712364	26717617	B_cells_Cheung.82842	0	.	26712364	26717617	0	1	5253	0
chr13	26712422	26720304	B_Cells_Pritchard.1422107	0	-	26712422	26720304	0	4	4528,354,1302,1243	0,4529,5337,6639
chr13	26717711	26721573	H1_polyA+.48940	0	.	26717711	26721573	0	1	3862	0
chr13	26739091	26740058	H1_polyA+.48944	0	.	26739091	26740058	0	1	967	0
chr13	26750065	26752229	REMC_BreastStem.21895	0	.	26750065	26752229	0	1	2164	0
chr13	26752825	26754525	REMC_MyoepithelialBreast.40697	0	.	26752825	26754525	0	1	1700	0
chr13	26754461	26755571	REMC_BreastStem.21897	0	.	26754461	26755571	0	1	1110	0
chr13	26760321	26762162	REMC_BreastStem.21898	0	.	26760321	26762162	0	1	1841	0
chr13	26761003	26763081	REMC_MyoepithelialBreast.40702	0	.	26761003	26763081	0	1	2078	0
chr13	26765106	26767464	REMC_BreastStem.21900	0	.	26765106	26767464	0	1	2358	0
chr13	26766246	26768637	REMC_MyoepithelialBreast.40715	0	.	26766246	26768637	0	1	2391	0
chr13	26810223	26810870	MCF7_Burge_Thompson.12818	0	.	26810223	26810870	0	1	647	0
chr13	26810380	26810791	B_Cells_Pritchard.1421363	0	.	26810380	26810791	0	1	411	0
chr13	26810422	26810805	BT474_Burge_Thompson.14100	0	.	26810422	26810805	0	1	383	0
chr13	26877282	26878570	HepG2_Caltech_ENCODE.15195	0	.	26877282	26878570	0	1	1288	0
chr13	26877321	26878580	liver_polyA+.57940	0	.	26877321	26878580	0	1	1259	0
chr13	26877633	26878226	kidney_Gilad.37657	0	.	26877633	26878226	0	1	593	0
chr13	26994839	26995971	REMC_MyoepithelialBreast.40738	0	.	26994839	26995971	0	1	1132	0
chr13	26995549	27000332	MIP101.28931	0	.	26995549	27000332	0	1	4783	0
chr13	26996028	26996957	REMC_MyoepithelialBreast.40739	0	.	26996028	26996957	0	1	929	0
chr13	26996462	26997318	REMC_LuminalBreast.43458	0	.	26996462	26997318	0	1	856	0
chr13	26998186	27000901	REMC_LuminalBreast.43460	0	.	26998186	27000901	0	1	2715	0
chr13	27006019	27011117	REMC_LuminalBreast.43463	0	.	27006019	27011117	0	1	5098	0
chr13	27143554	27143916	B_cells_Cheung.82893	0	.	27143554	27143916	0	1	362	0
chr13	27150425	27152702	testes_Burge.22376	0	-	27150425	27152702	0	2	661,52	0,2225
chr13	27291506	27292377	B_cells_Cheung.82895	0	.	27291506	27292377	0	1	871	0
chr13	27291776	27292737	B_Cells_Pritchard.1422671	0	.	27291776	27292737	0	1	961	0
chr13	27294994	27296083	B_Cells_Pritchard.1422679	0	.	27294994	27296083	0	1	1089	0
chr13	27295058	27295699	B_cells_Cheung.82896	0	.	27295058	27295699	0	1	641	0
chr13	27301917	27302623	B_cells_Cheung.82898	0	.	27301917	27302623	0	1	706	0
chr13	27305020	27306284	BT474_Burge_Thompson.14102	0	.	27305020	27306284	0	1	1264	0
chr13	27305080	27306360	B_cells_Cheung.82900	0	.	27305080	27306360	0	1	1280	0
chr13	27319707	27320666	B_Cells_Pritchard.1422759	0	.	27319707	27320666	0	1	959	0
chr13	27320067	27320671	B_cells_Cheung.82902	0	.	27320067	27320671	0	1	604	0
chr13	27379595	27379992	B_Cells_Pritchard.1423023	0	.	27379595	27379992	0	1	397	0
chr13	27425474	27426044	liver_polyA+.58016	0	.	27425474	27426044	0	1	570	0
chr13	27425486	27427413	B_cells_Cheung.82927	0	.	27425486	27427413	0	1	1927	0
chr13	27425662	27427522	HIT000002721	0	+	27425662	27427522	0	1	1860	0
chr13	27426105	27427459	liver_polyA+.58017	0	.	27426105	27427459	0	1	1354	0
chr13	27426206	27427151	BT474_Burge_Thompson.14110	0	.	27426206	27427151	0	1	945	0
chr13	27426223	27426527	kidney_Gilad.37718	0	.	27426223	27426527	0	1	304	0
chr13	27426768	27427101	kidney_Gilad.37717	0	.	27426768	27427101	0	1	333	0
chr13	27431757	27432902	HIT000048868	0	-	27431757	27432902	0	1	1145	0
chr13	27432546	27432922	A549_Myers.33928	0	.	27432546	27432922	0	1	376	0
chr13	27589756	27590216	B_cells_Cheung.82971	0	.	27589756	27590216	0	1	460	0
chr13	27598332	27598853	B_cells_Cheung.82975	0	.	27598332	27598853	0	1	521	0
chr13	27601357	27602614	REMC_MyoepithelialBreast.40786	0	.	27601357	27602614	0	1	1257	0
chr13	27601666	27603462	REMC_LuminalBreast.43486	0	.	27601666	27603462	0	1	1796	0
chr13	27967769	27969404	HIT000279833	0	+	27967769	27969404	0	1	1635	0
chr13	27973542	27974960	H1_polyA+.49037	0	.	27973542	27974960	0	1	1418	0
chr13	27997480	27997954	B_Cells_Pritchard.1424257	0	.	27997480	27997954	0	1	474	0
chr13	28003086	28004159	B_Cells_Pritchard.1424283	0	.	28003086	28004159	0	1	1073	0
chr13	28003162	28004195	B_cells_Cheung.83105	0	.	28003162	28004195	0	1	1033	0
chr13	28003477	28004254	H1_polyA+.49038	0	.	28003477	28004254	0	1	777	0
chr13	28004312	28005417	B_Cells_Pritchard.1424285	0	.	28004312	28005417	0	1	1105	0
chr13	28004718	28005068	A549_Myers.33952	0	.	28004718	28005068	0	1	350	0
chr13	28054492	28056752	B_Cells_Pritchard.1424451	0	+	28054492	28056752	0	2	260,71	0,2189
chr13	28123714	28127045	B_cells_Cheung.83121	0	.	28123714	28127045	0	1	3331	0
chr13	28127273	28129715	B_cells_Cheung.83122	0	.	28127273	28129715	0	1	2442	0
chr13	28156257	28157375	REMC_LuminalBreast.43543	0	.	28156257	28157375	0	1	1118	0
chr13	28156589	28157741	B_Cells_Pritchard.1424809	0	.	28156589	28157741	0	1	1152	0
chr13	28156609	28157567	REMC_MyoepithelialBreast.40800	0	.	28156609	28157567	0	1	958	0
chr13	28157620	28158109	REMC_MyoepithelialBreast.40801	0	.	28157620	28158109	0	1	489	0
chr13	28157838	28160389	REMC_LuminalBreast.43544	0	.	28157838	28160389	0	1	2551	0
chr13	28162471	28162866	REMC_MyoepithelialBreast.40804	0	.	28162471	28162866	0	1	395	0
chr13	28163509	28165727	REMC_LuminalBreast.43546	0	.	28163509	28165727	0	1	2218	0
chr13	28163854	28164737	REMC_MyoepithelialBreast.40805	0	.	28163854	28164737	0	1	883	0
chr13	28165889	28167355	REMC_LuminalBreast.43547	0	.	28165889	28167355	0	1	1466	0
chr13	28165940	28167458	REMC_BreastStem.21933	0	.	28165940	28167458	0	1	1518	0
chr13	28165956	28168091	REMC_MyoepithelialBreast.40807	0	.	28165956	28168091	0	1	2135	0
chr13	28165968	28166299	H9_polyA+.19281	0	.	28165968	28166299	0	1	331	0
chr13	28165975	28166299	H1_polyA+.49045	0	.	28165975	28166299	0	1	324	0
chr13	28168201	28168970	B_cells_Cheung.83130	0	.	28168201	28168970	0	1	769	0
chr13	28203919	28204383	B_cells_Cheung.83142	0	.	28203919	28204383	0	1	464	0
chr13	28291963	28292279	A549_Myers.33971	0	.	28291963	28292279	0	1	316	0
chr13	28979499	28980353	B_Cells_Pritchard.1426855	0	.	28979499	28980353	0	1	854	0
chr13	29068018	29068919	Rinn_00021740	0	+	29068018	29068919	0	2	262,97	0,804
chr13	29201652	29202952	REMC_MyoepithelialBreast.43855	0	.	29201652	29202952	0	1	1300	0
chr13	29225955	29226674	REMC_MyoepithelialBreast.43858	0	.	29225955	29226674	0	1	719	0
chr13	29232377	29235251	REMC_BreastStem.21980	0	.	29232377	29235251	0	1	2874	0
chr13	29380685	29384836	BT20_Thompson.9139	0	+	29380685	29384836	0	3	202,189,1226	0,2401,2925
chr13	29461016	29461693	B_Cells_Pritchard.1428001	0	.	29461016	29461693	0	1	677	0
chr13	29494135	29495937	HIT000027356	0	-	29494135	29495937	0	1	1802	0
chr13	29538084	29538909	H1_polyA+.49066	0	.	29538084	29538909	0	1	825	0
chr13	29575364	29581005	Rinn_00021510	0	-	29575364	29581005	0	2	2468,101	0,5540
chr13	29575577	29576288	prostate_carcinoma.42151	0	.	29575577	29576288	0	1	711	0
chr13	29579517	29583364	BT20_Thompson.9147	0	+	29579517	29583364	0	2	398,1120	0,2727
chr13	29581899	29583364	BT20_Thompson.9146	0	.	29581899	29583364	0	1	1465	0
chr13	29582373	29583427	melanoma_Garraway_short_term_cultures.28874	0	.	29582373	29583427	0	1	1054	0
chr13	29611926	29612828	B_Cells_Pritchard.1428589	0	.	29611926	29612828	0	1	902	0
chr13	29612336	29612700	B_cells_Cheung.83161	0	.	29612336	29612700	0	1	364	0
chr13	29614075	29616218	B_cells_Cheung.83163	0	.	29614075	29616218	0	1	2143	0
chr13	29614852	29615322	B_Cells_Pritchard.1428599	0	.	29614852	29615322	0	1	470	0
chr13	29615439	29616194	B_Cells_Pritchard.1428601	0	.	29615439	29616194	0	1	755	0
chr13	29623898	29631758	HIT000057138	0	-	29623898	29631758	0	2	388,6588	0,1272
chr13	29624021	29631758	Rinn_00021618	0	-	29624021	29631758	0	2	265,6589	0,1148
chr13	29624022	29631758	ENST00000437721	0	-	29624022	29631758	0	2	264,6588	0,1148
chr13	29624050	29624846	B_cells_Cheung.83167	0	.	29624050	29624846	0	1	796	0
chr13	29626049	29626858	testes_Burge.22428	0	.	29626049	29626858	0	1	809	0
chr13	29628869	29629855	B_cells_Cheung.83168	0	.	29628869	29629855	0	1	986	0
chr13	29639026	29639514	B_cells_Cheung.83169	0	.	29639026	29639514	0	1	488	0
chr13	29662219	29666319	B_cells_Cheung.83171	0	.	29662219	29666319	0	1	4100	0
chr13	29665386	29666193	CD4_Plagnol_resting.26262	0	.	29665386	29666193	0	1	807	0
chr13	29666895	29668487	B_cells_Cheung.83173	0	.	29666895	29668487	0	1	1592	0
chr13	29671197	29673218	B_Cells_Pritchard.1428833	0	.	29671197	29673218	0	1	2021	0
chr13	29671738	29673109	H1_polyA+.49122	0	.	29671738	29673109	0	1	1371	0
chr13	29782246	29785045	B_cells_Cheung.83189	0	.	29782246	29785045	0	1	2799	0
chr13	29782248	29786237	B_Cells_Pritchard.1429061	0	.	29782248	29786237	0	1	3989	0
chr13	29783913	29788926	khalil_578	0	.	29783913	29788926	0	4	47,139,136,948	0,166,3506,4065
chr13	29786531	29788072	B_cells_Cheung.83191	0	.	29786531	29788072	0	1	1541	0
chr13	29786534	29788067	B_Cells_Pritchard.1429067	0	.	29786534	29788067	0	1	1533	0
chr13	29786632	29788070	H1_polyA+.49153	0	.	29786632	29788070	0	1	1438	0
chr13	29786742	29787368	prostate_carcinoma.42176	0	.	29786742	29787368	0	1	626	0
chr13	29788099	29841422	HIT000049841	0	-	29788099	29841422	0	2	113,1662	0,51661
chr13	29793411	29798304	B_Cells_Pritchard.1429125	0	-	29793411	29798304	0	2	805,3635	0,1258
chr13	29794694	29799912	B_cells_Cheung.83198	0	.	29794694	29799912	0	1	5218	0
chr13	29795798	29798950	H1_polyA+.49123	0	.	29795798	29798950	0	1	3152	0
chr13	29802242	29808378	B_Cells_Pritchard.1429219	0	-	29802242	29808378	0	4	500,2460,764,2023	0,770,3289,4113
chr13	29803006	29808382	B_cells_Cheung.83202	0	.	29803006	29808382	0	1	5376	0
chr13	29803321	29804481	H1_polyA+.49124	0	.	29803321	29804481	0	1	1160	0
chr13	29806585	29806987	CD4_Plagnol_resting.26315	0	.	29806585	29806987	0	1	402	0
chr13	29808494	29837379	B_cells_Cheung.83474	0	-	29808494	29837379	0	3	5239,66,1174	0,26803,27711
chr13	29808537	29823573	B_Cells_Pritchard.1429277	0	+	29808537	29823573	0	3	11809,826,411	0,11871,14625
chr13	29812407	29846036	Rinn_00021474	0	-	29812407	29846036	0	5	1198,67,118,91,118	0,22889,27329,32013,33511
chr13	29821559	29822874	B_cells_Cheung.83476	0	.	29821559	29822874	0	1	1315	0
chr13	29824055	29825645	B_cells_Cheung.83478	0	.	29824055	29825645	0	3	263,829,299	0,406,1291
chr13	29825705	29840429	B_cells_Cheung.83473	0	.	29825705	29840429	0	1	14724	0
chr13	29827048	29827634	BT474_Burge_Thompson.14146	0	.	29827048	29827634	0	1	586	0
chr13	29828438	29830463	CD4_Plagnol_resting.26323	0	.	29828438	29830463	0	1	2025	0
chr13	29828710	29849344	B_Cells_Pritchard.1429657	0	-	29828710	29849344	0	15	705,60,364,123,892,1077,47,586,2889,1510,10,3392,311,310,381	0,759,1172,1680,2738,3766,6016,6587,7173,10198,11737,12409,17209,18893,20253
chr13	29828935	29838133	Rinn_00021954	0	-	29828935	29838133	0	5	594,145,124,67,1929	0,946,1454,6361,7269
chr13	29829644	29830117	CD4_Plagnol_activated.27244	0	.	29829644	29830117	0	1	473	0
chr13	29836022	29838647	prostate_carcinoma.42158	0	.	29836022	29838647	0	1	2625	0
chr13	29840670	29841516	prostate_carcinoma.42161	0	.	29840670	29841516	0	1	846	0
chr13	29841914	29842880	CD4_Plagnol_resting.26317	0	.	29841914	29842880	0	1	966	0
chr13	29842065	29844769	prostate_carcinoma.42162	0	.	29842065	29844769	0	1	2704	0
chr13	29862186	29867962	pHIT000086875	0	-	29862186	29867962	0	3	125,76,357	0,5262,5419
chr13	29866326	29866646	B_cells_Cheung.83479	0	.	29866326	29866646	0	1	320	0
chr13	29867584	29867962	pHIT000023063	0	-	29867584	29867962	0	1	378	0
chr13	29880184	29891207	REMC_BreastStem.22003	0	+	29880184	29891207	0	2	446,1197	0,9826
chr13	29880442	29891138	Rinn_00021745	0	+	29880442	29891138	0	2	188,1129	0,9567
chr13	29889444	29894860	B_cells_Cheung.83236	0	.	29889444	29894860	0	1	5416	0
chr13	29889501	29892038	REMC_MyoepithelialBreast.40829	0	.	29889501	29892038	0	1	2537	0
chr13	29889731	29894031	H1_polyA+.49128	0	.	29889731	29894031	0	1	4300	0
chr13	29902618	29905525	B_Cells_Pritchard.1429245	0	.	29902618	29905525	0	1	2907	0
chr13	29916031	29916671	prostate_carcinoma.42310	0	.	29916031	29916671	0	1	640	0
chr13	29917348	29918888	B_cells_Cheung.83255	0	.	29917348	29918888	0	1	1540	0
chr13	29917759	29918545	brain_AmbionMAQC.18675	0	.	29917759	29918545	0	1	786	0
chr13	29920427	29922114	B_cells_Cheung.83257	0	.	29920427	29922114	0	1	1687	0
chr13	29920444	29921037	H1_polyA+.49132	0	.	29920444	29921037	0	1	593	0
chr13	29922234	29923255	B_cells_Cheung.83258	0	.	29922234	29923255	0	1	1021	0
chr13	29926428	29927868	B_cells_Cheung.83263	0	.	29926428	29927868	0	1	1440	0
chr13	30146086	30146596	A549_Myers.34029	0	.	30146086	30146596	0	1	510	0
chr13	30255394	30255760	B_Cells_Pritchard.1430091	0	.	30255394	30255760	0	1	366	0
chr13	30270426	30271244	B_cells_Cheung.83423	0	.	30270426	30271244	0	1	818	0
chr13	30314635	30316511	prostate_normal.24772	0	-	30314635	30316511	0	2	359,9	0,1867
chr13	30314790	30315745	prostate_carcinoma.42284	0	.	30314790	30315745	0	1	955	0
chr13	30314790	30316975	prostate_carcinoma.42286	0	+	30314790	30316975	0	3	826,370,105	0,1075,2080
chr13	30314863	30315662	B_Cells_Pritchard.1430299	0	.	30314863	30315662	0	1	799	0
chr13	30315763	30316098	B_Cells_Pritchard.1430301	0	.	30315763	30316098	0	1	335	0
chr13	30315821	30316975	prostate_carcinoma.42285	0	.	30315821	30316975	0	1	1154	0
chr13	30316481	30317349	HepG2_Caltech_ENCODE.15254	0	.	30316481	30317349	0	1	868	0
chr13	30316487	30317301	B_Cells_Pritchard.1430303	0	.	30316487	30317301	0	1	814	0
chr13	30324054	30367928	pHIT000112594	0	-	30324054	30367928	0	3	456,134,49	0,17728,43825
chr13	30335554	30337042	NEC_from_H9.32183	0	+	30335554	30337042	0	2	161,170	0,1318
chr13	30350205	30355539	H1_polyA+.49188	0	.	30350205	30355539	0	1	5334	0
chr13	30353101	30355433	Rinn_00021746	0	+	30353101	30355433	0	3	121,101,204	0,1594,2128
chr13	30354087	30355510	NEC_from_H9.32184	0	+	30354087	30355510	0	3	54,100,280	0,609,1143
chr13	30354686	30355532	Rinn_00021538	0	+	30354686	30355532	0	2	110,303	0,543
chr13	30509220	30510230	B_Cells_Pritchard.1430835	0	.	30509220	30510230	0	1	1010	0
chr13	30593884	30594892	REMC_LuminalBreast.43649	0	.	30593884	30594892	0	1	1008	0
chr13	31448582	31449456	REMC_LuminalBreast.43700	0	.	31448582	31449456	0	1	874	0
chr13	31453129	31455893	REMC_LuminalBreast.43702	0	.	31453129	31455893	0	1	2764	0
chr13	31456649	31457478	REMC_LuminalBreast.43703	0	.	31456649	31457478	0	1	829	0
chr13	31462983	31464738	REMC_LuminalBreast.43706	0	.	31462983	31464738	0	1	1755	0
chr13	31470761	31471591	REMC_LuminalBreast.43711	0	.	31470761	31471591	0	1	830	0
chr13	31473693	31474359	B_cells_Cheung.83483	0	.	31473693	31474359	0	1	666	0
chr13	31475732	31477311	REMC_LuminalBreast.43712	0	.	31475732	31477311	0	1	1579	0
chr13	31475791	31476508	B_cells_Cheung.83484	0	.	31475791	31476508	0	1	717	0
chr13	31490263	31490809	B_cells_Cheung.83485	0	.	31490263	31490809	0	1	546	0
chr13	31491811	31492926	B_cells_Cheung.83486	0	.	31491811	31492926	0	1	1115	0
chr13	31491921	31496325	H1_polyA+.49236	0	.	31491921	31496325	0	1	4404	0
chr13	31492049	31492978	HepG2_Caltech_ENCODE.15262	0	.	31492049	31492978	0	1	929	0
chr13	31492183	31492952	B_Cells_Pritchard.1433309	0	.	31492183	31492952	0	1	769	0
chr13	31770274	31771172	liver_polyA+.58315	0	.	31770274	31771172	0	1	898	0
chr13	31770369	31771113	melanoma_Garraway_short_term_cultures.28927	0	.	31770369	31771113	0	1	744	0
chr13	31770502	31771219	prostate_normal.24795	0	.	31770502	31771219	0	1	717	0
chr13	32021811	32022596	B_Cells_Pritchard.1434515	0	.	32021811	32022596	0	1	785	0
chr13	32255011	32260334	HIT000055700	0	+	32255011	32260334	0	1	5323	0
chr13	32255867	32260388	H1_polyA+.49290	0	.	32255867	32260388	0	1	4521	0
chr13	32258751	32261915	REMC_LuminalBreast.43742	0	.	32258751	32261915	0	1	3164	0
chr13	32258860	32260390	B_cells_Cheung.83598	0	.	32258860	32260390	0	1	1530	0
chr13	32260472	32273048	B_Cells_Pritchard.1435321	0	-	32260472	32273048	0	2	3673,95	0,12481
chr13	32261892	32262866	REMC_MyoepithelialBreast.41039	0	.	32261892	32262866	0	1	974	0
chr13	32262055	32263564	B_cells_Cheung.83600	0	.	32262055	32263564	0	1	1509	0
chr13	32262375	32264186	prostate_carcinoma.42344	0	.	32262375	32264186	0	1	1811	0
chr13	32263615	32264181	B_cells_Cheung.83601	0	.	32263615	32264181	0	1	566	0
chr13	32263671	32264170	REMC_BreastStem.22110	0	.	32263671	32264170	0	1	499	0
chr13	32263685	32264298	CD4_Plagnol_resting.26414	0	.	32263685	32264298	0	1	613	0
chr13	32263780	32267754	REMC_LuminalBreast.43743	0	.	32263780	32267754	0	1	3974	0
chr13	32263805	32264869	REMC_MyoepithelialBreast.41040	0	.	32263805	32264869	0	1	1064	0
chr13	32270133	32271122	MIP101.29167	0	.	32270133	32271122	0	1	989	0
chr13	32270414	32271129	melanoma_Garraway_short_term_cultures.28967	0	.	32270414	32271129	0	1	715	0
chr13	32270583	32271125	B_Cells_Pritchard.1435355	0	-	32270583	32271125	0	1	542	0
chr13	32270620	32271132	prostate_carcinoma.42346	0	.	32270620	32271132	0	1	512	0
chr13	32274350	32275045	REMC_MyoepithelialBreast.41044	0	.	32274350	32275045	0	1	695	0
chr13	32539672	32540534	prostate_carcinoma.42361	0	.	32539672	32540534	0	1	862	0
chr13	33162277	33162636	B_cells_Cheung.83816	0	.	33162277	33162636	0	1	359	0
chr13	33165344	33166003	B_cells_Cheung.83819	0	.	33165344	33166003	0	1	659	0
chr13	33189046	33189589	B_cells_Cheung.83831	0	.	33189046	33189589	0	1	543	0
chr13	33189840	33191464	B_cells_Cheung.83832	0	.	33189840	33191464	0	1	1624	0
chr13	33236384	33237133	B_cells_Cheung.83838	0	.	33236384	33237133	0	1	749	0
chr13	33440429	33442339	H1_polyA+.49442	0	.	33440429	33442339	0	1	1910	0
chr13	33440548	33441925	B_Cells_Pritchard.1438953	0	.	33440548	33441925	0	1	1377	0
chr13	33551517	33552072	HepG2_Caltech_ENCODE.15337	0	.	33551517	33552072	0	1	555	0
chr13	33551547	33552271	HIT000269384	0	+	33551547	33552271	0	1	724	0
chr13	33606573	33607024	HepG2_Caltech_ENCODE.15340	0	.	33606573	33607024	0	1	451	0
chr13	33823338	33823679	prostate_carcinoma.42457	0	.	33823338	33823679	0	1	341	0
chr13	33830827	33832262	prostate_carcinoma.42461	0	.	33830827	33832262	0	1	1435	0
chr13	33830864	33831888	BT474_Burge_Thompson.14201	0	.	33830864	33831888	0	1	1024	0
chr13	33830874	33831614	MIP101.29208	0	.	33830874	33831614	0	1	740	0
chr13	33851741	33852315	prostate_carcinoma.42469	0	.	33851741	33852315	0	1	574	0
chr13	33851836	33852218	BT474_Burge_Thompson.14197	0	.	33851836	33852218	0	1	382	0
chr13	34047384	34049892	BT474_Burge_Thompson.14227	0	.	34047384	34049892	0	1	2508	0
chr13	34047694	34049167	prostate_carcinoma.42508	0	.	34047694	34049167	0	1	1473	0
chr13	34048282	34048842	prostate_normal.24889	0	.	34048282	34048842	0	1	560	0
chr13	34050984	34057742	prostate_carcinoma.42511	0	.	34050984	34057742	0	1	6758	0
chr13	34058285	34063127	prostate_carcinoma.42512	0	.	34058285	34063127	0	1	4842	0
chr13	34058310	34059944	prostate_normal.24890	0	.	34058310	34059944	0	1	1634	0
chr13	34071873	34073147	prostate_carcinoma.42513	0	.	34071873	34073147	0	1	1274	0
chr13	34073525	34074805	prostate_carcinoma.42514	0	.	34073525	34074805	0	1	1280	0
chr13	34078474	34079488	prostate_carcinoma.42515	0	.	34078474	34079488	0	1	1014	0
chr13	34079614	34081515	prostate_carcinoma.42516	0	.	34079614	34081515	0	1	1901	0
chr13	34083242	34088422	prostate_carcinoma.42518	0	.	34083242	34088422	0	1	5180	0
chr13	35145992	35149082	REMC_BreastStem.22179	0	.	35145992	35149082	0	1	3090	0
chr13	35156374	35156934	REMC_BreastStem.22181	0	.	35156374	35156934	0	1	560	0
chr13	35167852	35168572	REMC_BreastStem.22182	0	.	35167852	35168572	0	1	720	0
chr13	35846145	35848656	REMC_LuminalBreast.43852	0	.	35846145	35848656	0	1	2511	0
chr13	35849595	35850859	REMC_MyoepithelialBreast.41090	0	.	35849595	35850859	0	1	1264	0
chr13	35850926	35852777	REMC_MyoepithelialBreast.41091	0	.	35850926	35852777	0	1	1851	0
chr13	35851474	35852887	REMC_LuminalBreast.43855	0	.	35851474	35852887	0	1	1413	0
chr13	35871714	35873142	REMC_LuminalBreast.43865	0	.	35871714	35873142	0	1	1428	0
chr13	35873300	35877587	REMC_LuminalBreast.43866	0	.	35873300	35877587	0	1	4287	0
chr13	35879169	35881511	REMC_LuminalBreast.43868	0	.	35879169	35881511	0	1	2342	0
chr13	35879713	35883309	REMC_BreastStem.22224	0	+	35879713	35883309	0	2	897,24	0,3572
chr13	35884588	35887684	REMC_BreastStem.22225	0	.	35884588	35887684	0	1	3096	0
chr13	35886252	35888689	REMC_LuminalBreast.43872	0	.	35886252	35888689	0	1	2437	0
chr13	35893752	35894649	REMC_MyoepithelialBreast.41103	0	.	35893752	35894649	0	1	897	0
chr13	35898086	35899046	REMC_LuminalBreast.43875	0	.	35898086	35899046	0	1	960	0
chr13	36613251	36613990	prostate_carcinoma.42644	0	.	36613251	36613990	0	1	739	0
chr13	36619143	36619893	prostate_carcinoma.42649	0	.	36619143	36619893	0	1	750	0
chr13	36824170	36824851	prostate_carcinoma.42652	0	.	36824170	36824851	0	1	681	0
chr13	37007075	37023673	Rinn_00021483	0	+	37007075	37023673	0	5	26,38,72,146,3037	0,875,12894,13156,13561
chr13	37007076	37023673	HIT000016933	0	+	37007076	37023673	0	5	25,37,71,145,3036	0,875,12894,13156,13561
chr13	37391350	37393166	H9_polyA-_Chen.6203	0	.	37391350	37393166	0	1	1816	0
chr13	37392634	37393141	H9_polyA+.19484	0	.	37392634	37393141	0	1	507	0
chr13	37393294	37411188	H1_polyA+.53023	0	.	37393294	37411188	0	1	17894	0
chr13	37406164	37407197	H9_polyA+.19494	0	.	37406164	37407197	0	1	1033	0
chr13	37406227	37406969	H9_polyA-_Chen.6211	0	.	37406227	37406969	0	1	742	0
chr13	37408132	37408543	H1_rRNA-depleted_UCSD_REMC.38441	0	.	37408132	37408543	0	1	411	0
chr13	37409034	37409558	H9_polyA-_Chen.6212	0	.	37409034	37409558	0	1	524	0
chr13	37418257	37418755	H9_polyA+.19500	0	.	37418257	37418755	0	1	498	0
chr13	37451258	37457277	REMC_MyoepithelialBreast.41135	0	.	37451258	37457277	0	1	6019	0
chr13	37455458	37457475	REMC_LuminalBreast.43958	0	.	37455458	37457475	0	1	2017	0
chr13	37458183	37461165	REMC_MyoepithelialBreast.41136	0	.	37458183	37461165	0	1	2982	0
chr13	37458811	37460572	REMC_LuminalBreast.43960	0	.	37458811	37460572	0	1	1761	0
chr13	37491512	37495421	REMC_MyoepithelialBreast.41153	0	.	37491512	37495421	0	1	3909	0
chr13	37497061	37504411	REMC_MyoepithelialBreast.41156	0	.	37497061	37504411	0	1	7350	0
chr13	37498020	37499221	REMC_LuminalBreast.43973	0	.	37498020	37499221	0	1	1201	0
chr13	37501340	37504469	REMC_LuminalBreast.43975	0	.	37501340	37504469	0	1	3129	0
chr13	37501546	37523017	HepG2_Caltech_ENCODE.15377	0	+	37501546	37523017	0	2	287,6930	0,14541
chr13	37501789	37502242	prostate_carcinoma.42687	0	.	37501789	37502242	0	1	453	0
chr13	37511726	37518393	prostate_carcinoma.42685	0	-	37511726	37518393	0	2	61,3277	0,3390
chr13	37514718	37524192	REMC_MyoepithelialBreast.41249	0	.	37514718	37524192	0	1	9474	0
chr13	37514938	37518393	prostate_carcinoma.42684	0	.	37514938	37518393	0	1	3455	0
chr13	37515757	37517348	REMC_LuminalBreast.43980	0	.	37515757	37517348	0	1	1591	0
chr13	37516096	37523026	H9_polyA+.19504	0	+	37516096	37523026	0	2	2638,3987	0,2943
chr13	37516096	37523026	H9_polyA+.19505	0	.	37516096	37523026	0	1	6930	0
chr13	37516151	37517054	H9_polyA-_Chen.6213	0	.	37516151	37517054	0	1	903	0
chr13	37516152	37517384	B_Cells_Pritchard.1447075	0	.	37516152	37517384	0	1	1232	0
chr13	37516261	37517813	prostate_normal.24969	0	.	37516261	37517813	0	1	1552	0
chr13	37516945	37517764	B_cells_Cheung.84112	0	.	37516945	37517764	0	1	819	0
chr13	37517120	37517609	H9_polyA-_Chen.6215	0	.	37517120	37517609	0	1	489	0
chr13	37519738	37520725	prostate_carcinoma.42690	0	.	37519738	37520725	0	1	987	0
chr13	37548013	37548925	H1_polyA+.53061	0	.	37548013	37548925	0	1	912	0
chr13	37622687	37623561	REMC_MyoepithelialBreast.41263	0	.	37622687	37623561	0	1	874	0
chr13	37653525	37656902	MIP101.29277	0	.	37653525	37656902	0	1	3377	0
chr13	37656149	37657369	REMC_MyoepithelialBreast.41275	0	.	37656149	37657369	0	1	1220	0
chr13	37691778	37692438	B_Cells_Pritchard.1447645	0	.	37691778	37692438	0	1	660	0
chr13	37738262	37739200	REMC_LuminalBreast.44213	0	.	37738262	37739200	0	1	938	0
chr13	37739332	37739976	REMC_LuminalBreast.44214	0	.	37739332	37739976	0	1	644	0
chr13	37747386	37748017	REMC_LuminalBreast.44218	0	.	37747386	37748017	0	1	631	0
chr13	37752192	37753413	REMC_LuminalBreast.44222	0	.	37752192	37753413	0	1	1221	0
chr13	37771919	37783650	REMC_MyoepithelialBreast.41308	0	.	37771919	37783650	0	1	11731	0
chr13	37777027	37783521	REMC_LuminalBreast.44233	0	.	37777027	37783521	0	1	6494	0
chr13	37783826	37785323	REMC_LuminalBreast.44234	0	.	37783826	37785323	0	1	1497	0
chr13	37784065	37785350	REMC_MyoepithelialBreast.41309	0	.	37784065	37785350	0	1	1285	0
chr13	37785532	37794305	REMC_MyoepithelialBreast.41310	0	.	37785532	37794305	0	1	8773	0
chr13	37786544	37792974	REMC_LuminalBreast.44236	0	.	37786544	37792974	0	1	6430	0
chr13	37796306	37798816	REMC_LuminalBreast.44239	0	.	37796306	37798816	0	1	2510	0
chr13	37797033	37801416	REMC_MyoepithelialBreast.41312	0	.	37797033	37801416	0	1	4383	0
chr13	37798928	37801330	REMC_LuminalBreast.44240	0	.	37798928	37801330	0	1	2402	0
chr13	37808041	37809975	B_cells_Cheung.84154	0	.	37808041	37809975	0	1	1934	0
chr13	37808646	37808976	B_Cells_Pritchard.1448013	0	.	37808646	37808976	0	1	330	0
chr13	37841173	37849039	REMC_MyoepithelialBreast.41317	0	.	37841173	37849039	0	1	7866	0
chr13	37844920	37847033	REMC_LuminalBreast.44058	0	.	37844920	37847033	0	1	2113	0
chr13	37844992	37846072	HIT000222603	0	-	37844992	37846072	0	1	1080	0
chr13	37851975	37854504	REMC_BreastStem.22265	0	.	37851975	37854504	0	1	2529	0
chr13	37852618	37855429	REMC_MyoepithelialBreast.41162	0	.	37852618	37855429	0	1	2811	0
chr13	37852670	37855583	REMC_LuminalBreast.44061	0	.	37852670	37855583	0	1	2913	0
chr13	37861244	37862099	REMC_BreastStem.22269	0	.	37861244	37862099	0	1	855	0
chr13	37876893	37878550	REMC_MyoepithelialBreast.41174	0	.	37876893	37878550	0	1	1657	0
chr13	38680665	38683913	REMC_MyoepithelialBreast.41191	0	.	38680665	38683913	0	1	3248	0
chr13	38680858	38682765	REMC_BreastStem.22286	0	.	38680858	38682765	0	1	1907	0
chr13	38811285	38812259	B_Cells_Pritchard.1449979	0	.	38811285	38812259	0	1	974	0
chr13	39093179	39094231	REMC_MyoepithelialBreast.41205	0	.	39093179	39094231	0	1	1052	0
chr13	39094682	39096343	REMC_BreastStem.22362	0	.	39094682	39096343	0	1	1661	0
chr13	39626999	39627551	liver_polyA+.58786	0	.	39626999	39627551	0	1	552	0
chr13	39626999	39627547	kidney_Gilad.38176	0	.	39626999	39627547	0	1	548	0
chr13	39666644	39692639	Rinn_00021475	0	-	39666644	39692639	0	6	1884,145,114,192,155,67	0,2759,3256,9819,12390,25928
chr13	39666645	39692639	NR_033877	0	-	39666645	39692639	0	6	1883,144,113,191,154,66	0,2759,3256,9819,12390,25928
chr13	39685600	39686202	liver_polyA+.58801	0	.	39685600	39686202	0	1	602	0
chr13	39697116	39698544	H1_polyA+.49731	0	.	39697116	39698544	0	1	1428	0
chr13	39739459	39740529	H1_polyA+.49733	0	.	39739459	39740529	0	1	1070	0
chr13	39761670	39762087	liver_polyA+.58807	0	.	39761670	39762087	0	1	417	0
chr13	39761701	39762595	H1_polyA+.49735	0	.	39761701	39762595	0	1	894	0
chr13	39768115	39769350	H1_polyA+.49739	0	.	39768115	39769350	0	1	1235	0
chr13	39771840	39773385	H1_polyA+.49741	0	.	39771840	39773385	0	1	1545	0
chr13	39787775	39788135	liver_polyA+.58823	0	.	39787775	39788135	0	1	360	0
chr13	39788277	39789347	B_cells_Cheung.84273	0	.	39788277	39789347	0	1	1070	0
chr13	39793389	39795074	H1_polyA+.49747	0	.	39793389	39795074	0	1	1685	0
chr13	39793509	39794209	B_cells_Cheung.84275	0	.	39793509	39794209	0	1	700	0
chr13	39796037	39798024	liver_polyA+.58832	0	.	39796037	39798024	0	1	1987	0
chr13	39796037	39796425	kidney_Gilad.38211	0	.	39796037	39796425	0	1	388	0
chr13	39803272	39804629	H1_polyA+.49753	0	.	39803272	39804629	0	1	1357	0
chr13	39804754	39807093	H1_polyA+.49754	0	.	39804754	39807093	0	1	2339	0
chr13	39806101	39806528	liver_polyA+.58841	0	.	39806101	39806528	0	1	427	0
chr13	39814062	39817182	H1_polyA+.49759	0	.	39814062	39817182	0	1	3120	0
chr13	39861116	39862012	B_Cells_Pritchard.1452915	0	.	39861116	39862012	0	1	896	0
chr13	39862407	39863213	B_Cells_Pritchard.1452919	0	.	39862407	39863213	0	1	806	0
chr13	39923391	39925754	CD4_Plagnol_resting.26510	0	.	39923391	39925754	0	1	2363	0
chr13	39923531	39928286	H1_polyA+.49764	0	.	39923531	39928286	0	1	4755	0
chr13	39923547	39926210	REMC_LuminalBreast.44122	0	.	39923547	39926210	0	1	2663	0
chr13	39923867	39926890	HepG2_Caltech_ENCODE.15395	0	.	39923867	39926890	0	1	3023	0
chr13	39923878	39926477	B_cells_Cheung.84292	0	.	39923878	39926477	0	1	2599	0
chr13	39923904	39925675	CD4_Plagnol_activated.27433	0	.	39923904	39925675	0	1	1771	0
chr13	39924010	39926218	prostate_carcinoma.42740	0	.	39924010	39926218	0	1	2208	0
chr13	39924048	39926651	REMC_MyoepithelialBreast.41221	0	.	39924048	39926651	0	1	2603	0
chr13	39924093	39924831	prostate_normal.24999	0	.	39924093	39924831	0	1	738	0
chr13	39924786	39925567	REMC_BreastStem.22370	0	.	39924786	39925567	0	1	781	0
chr13	39924882	39925603	prostate_normal.25000	0	.	39924882	39925603	0	1	721	0
chr13	39935533	39936735	B_Cells_Pritchard.1453181	0	.	39935533	39936735	0	1	1202	0
chr13	39935539	39936797	B_cells_Cheung.84302	0	.	39935539	39936797	0	1	1258	0
chr13	39935639	39936617	REMC_MyoepithelialBreast.41230	0	.	39935639	39936617	0	1	978	0
chr13	39935861	39936891	HepG2_Caltech_ENCODE.15401	0	.	39935861	39936891	0	1	1030	0
chr13	39939830	39941650	REMC_LuminalBreast.44137	0	.	39939830	39941650	0	1	1820	0
chr13	39939905	39940794	B_cells_Cheung.84307	0	.	39939905	39940794	0	1	889	0
chr13	39941878	39944208	H1_polyA+.49769	0	.	39941878	39944208	0	1	2330	0
chr13	39942097	39944137	REMC_LuminalBreast.44136	0	.	39942097	39944137	0	1	2040	0
chr13	39942238	39942672	B_Cells_Pritchard.1453203	0	.	39942238	39942672	0	1	434	0
chr13	39947737	39948290	B_cells_Cheung.84311	0	.	39947737	39948290	0	1	553	0
chr13	39947745	39949473	REMC_LuminalBreast.44125	0	.	39947745	39949473	0	1	1728	0
chr13	39947795	39948381	B_Cells_Pritchard.1453227	0	.	39947795	39948381	0	1	586	0
chr13	39949480	39951771	H1_polyA+.49773	0	.	39949480	39951771	0	1	2291	0
chr13	39949720	39952538	REMC_LuminalBreast.44126	0	.	39949720	39952538	0	1	2818	0
chr13	39949830	39950667	B_cells_Cheung.84313	0	.	39949830	39950667	0	1	837	0
chr13	39950046	39951741	REMC_MyoepithelialBreast.41237	0	.	39950046	39951741	0	1	1695	0
chr13	39950924	39951681	B_cells_Cheung.84314	0	.	39950924	39951681	0	1	757	0
chr13	39952695	39958010	REMC_LuminalBreast.44127	0	.	39952695	39958010	0	1	5315	0
chr13	39952942	39954176	REMC_MyoepithelialBreast.41238	0	.	39952942	39954176	0	1	1234	0
chr13	39953274	39954755	H1_polyA+.49774	0	.	39953274	39954755	0	1	1481	0
chr13	39954862	39957709	H1_polyA+.49775	0	.	39954862	39957709	0	1	2847	0
chr13	39958152	39959402	REMC_MyoepithelialBreast.41242	0	.	39958152	39959402	0	1	1250	0
chr13	39958170	39959627	REMC_LuminalBreast.44128	0	.	39958170	39959627	0	1	1457	0
chr13	39959506	39961057	REMC_MyoepithelialBreast.41243	0	.	39959506	39961057	0	1	1551	0
chr13	39960922	39965765	REMC_LuminalBreast.44130	0	.	39960922	39965765	0	1	4843	0
chr13	39960952	39962602	B_cells_Cheung.84316	0	.	39960952	39962602	0	1	1650	0
chr13	39961056	39965048	H1_polyA+.49777	0	.	39961056	39965048	0	1	3992	0
chr13	39962463	39970408	REMC_MyoepithelialBreast.41245	0	.	39962463	39970408	0	1	7945	0
chr13	39965192	39969906	H1_polyA+.49778	0	.	39965192	39969906	0	1	4714	0
chr13	39965857	39971159	REMC_LuminalBreast.44131	0	.	39965857	39971159	0	1	5302	0
chr13	39966482	39971247	B_Cells_Pritchard.1453313	0	+	39966482	39971247	0	2	292,1370	0,3395
chr13	39967365	39967949	B_cells_Cheung.84318	0	.	39967365	39967949	0	1	584	0
chr13	39968808	39971121	B_cells_Cheung.84319	0	.	39968808	39971121	0	1	2313	0
chr13	39969584	39970293	liver_polyA+.58859	0	.	39969584	39970293	0	1	709	0
chr13	39976093	39977412	H1_polyA+.49782	0	.	39976093	39977412	0	1	1319	0
chr13	39976578	39987713	REMC_MyoepithelialBreast.41247	0	.	39976578	39987713	0	1	11135	0
chr13	39977621	39979904	H1_polyA+.49783	0	.	39977621	39979904	0	1	2283	0
chr13	39978500	39979897	B_cells_Cheung.84320	0	.	39978500	39979897	0	1	1397	0
chr13	39979030	39979854	REMC_BreastStem.22373	0	.	39979030	39979854	0	1	824	0
chr13	39979030	39979933	B_Cells_Pritchard.1453351	0	.	39979030	39979933	0	1	903	0
chr13	39983642	39984662	REMC_BreastStem.22376	0	.	39983642	39984662	0	1	1020	0
chr13	39987056	39987401	B_cells_Cheung.84328	0	.	39987056	39987401	0	1	345	0
chr13	39987834	39988441	B_cells_Cheung.84330	0	.	39987834	39988441	0	1	607	0
chr13	39987855	39988479	REMC_MyoepithelialBreast.41453	0	.	39987855	39988479	0	1	624	0
chr13	39987875	39988416	B_Cells_Pritchard.1453391	0	.	39987875	39988416	0	1	541	0
chr13	39991547	39995392	H1_polyA+.50025	0	.	39991547	39995392	0	1	3845	0
chr13	39992005	39995333	REMC_BreastStem.22379	0	.	39992005	39995333	0	1	3328	0
chr13	39992648	39994673	B_Cells_Pritchard.1453419	0	.	39992648	39994673	0	1	2025	0
chr13	39992944	39994592	prostate_carcinoma.42745	0	.	39992944	39994592	0	1	1648	0
chr13	39993052	39994022	HepG2_Caltech_ENCODE.15404	0	.	39993052	39994022	0	1	970	0
chr13	40007347	40009792	CD4_Plagnol_resting.26515	0	.	40007347	40009792	0	1	2445	0
chr13	40007368	40008555	B_cells_Cheung.84340	0	.	40007368	40008555	0	1	1187	0
chr13	40007379	40008366	prostate_carcinoma.42749	0	.	40007379	40008366	0	1	987	0
chr13	40007380	40008055	CD4_Plagnol_activated.27437	0	.	40007380	40008055	0	1	675	0
chr13	40007390	40009731	liver_polyA+.58870	0	-	40007390	40009731	0	2	568,1075	0,1266
chr13	40007401	40008469	H1_polyA+.50032	0	.	40007401	40008469	0	1	1068	0
chr13	40007483	40008543	B_Cells_Pritchard.1453499	0	+	40007483	40008543	0	1	1060	0
chr13	40007493	40008380	REMC_BreastStem.22384	0	.	40007493	40008380	0	1	887	0
chr13	40007513	40008217	prostate_normal.25002	0	.	40007513	40008217	0	1	704	0
chr13	40008610	40009895	H1_polyA+.50033	0	.	40008610	40009895	0	1	1285	0
chr13	40008613	40009504	CD4_Plagnol_activated.27438	0	.	40008613	40009504	0	1	891	0
chr13	40008613	40010080	REMC_BreastStem.22385	0	.	40008613	40010080	0	1	1467	0
chr13	40008613	40010050	B_cells_Cheung.84341	0	.	40008613	40010050	0	1	1437	0
chr13	40008684	40009934	prostate_carcinoma.42750	0	.	40008684	40009934	0	1	1250	0
chr13	40008686	40009838	prostate_normal.25003	0	.	40008686	40009838	0	1	1152	0
chr13	40008730	40009879	melanoma_Garraway_short_term_cultures.29240	0	.	40008730	40009879	0	1	1149	0
chr13	40010297	40010656	B_cells_Cheung.84342	0	.	40010297	40010656	0	1	359	0
chr13	40014585	40015781	REMC_BreastStem.22388	0	.	40014585	40015781	0	1	1196	0
chr13	40017326	40020601	prostate_carcinoma.42746	0	+	40017326	40020601	0	2	245,1778	0,1497
chr13	40017731	40020609	B_Cells_Pritchard.1453435	0	.	40017731	40020609	0	1	2878	0
chr13	40017779	40020667	CD4_Plagnol_resting.26516	0	.	40017779	40020667	0	1	2888	0
chr13	40017819	40020601	prostate_carcinoma.42747	0	.	40017819	40020601	0	1	2782	0
chr13	40017830	40020601	B_cells_Cheung.84347	0	.	40017830	40020601	0	1	2771	0
chr13	40017861	40020572	CD4_Plagnol_activated.27477	0	.	40017861	40020572	0	1	2711	0
chr13	40017914	40019485	MCF10A_Thompson.9406	0	.	40017914	40019485	0	1	1571	0
chr13	40018131	40018863	H9_polyA+.19538	0	.	40018131	40018863	0	1	732	0
chr13	40018428	40018870	lymph_node_Burge.21135	0	.	40018428	40018870	0	1	442	0
chr13	40018534	40019039	liver_polyA+.58865	0	.	40018534	40019039	0	1	505	0
chr13	40019412	40020406	melanoma_Garraway_short_term_cultures.29245	0	.	40019412	40020406	0	1	994	0
chr13	40019637	40020427	MCF10A_Thompson.9407	0	.	40019637	40020427	0	1	790	0
chr13	40019638	40020067	H9_polyA+.19539	0	.	40019638	40020067	0	1	429	0
chr13	40025605	40026041	CD4_Snyder.33064	0	.	40025605	40026041	0	1	436	0
chr13	40153724	40154028	H1_rRNA-depleted_UCSD_REMC.38590	0	.	40153724	40154028	0	1	304	0
chr13	40155890	40157126	B_Cells_Pritchard.1453901	0	-	40155890	40157126	0	2	277,230	0,1006
chr13	40161866	40162465	B_Cells_Pritchard.1453931	0	.	40161866	40162465	0	1	599	0
chr13	40182436	40183001	REMC_LuminalBreast.44148	0	.	40182436	40183001	0	1	565	0
chr13	40183672	40184670	REMC_MyoepithelialBreast.41321	0	.	40183672	40184670	0	1	998	0
chr13	40184253	40184556	B_cells_Cheung.84408	0	.	40184253	40184556	0	1	303	0
chr13	40184792	40185895	REMC_MyoepithelialBreast.41322	0	.	40184792	40185895	0	1	1103	0
chr13	40185376	40185932	B_cells_Cheung.84411	0	.	40185376	40185932	0	1	556	0
chr13	40188909	40190641	B_Cells_Pritchard.1454225	0	-	40188909	40190641	0	1	1732	0
chr13	40195085	40197289	REMC_LuminalBreast.44151	0	.	40195085	40197289	0	1	2204	0
chr13	40198009	40199143	H1_polyA+.49809	0	.	40198009	40199143	0	1	1134	0
chr13	40259752	40260345	REMC_LuminalBreast.44165	0	.	40259752	40260345	0	1	593	0
chr13	40336828	40349427	MCF7_Burge_Thompson.13001	0	-	40336828	40349427	0	2	74,3475	0,9124
chr13	40339741	40349069	H1_polyA+.49835	0	+	40339741	40349069	0	2	60,4367	0,4961
chr13	40345149	40356133	REMC_LuminalBreast.44193	0	.	40345149	40356133	0	1	10984	0
chr13	40345157	40354169	B_Cells_Pritchard.1455611	0	+	40345157	40354169	0	3	3382,783,4355	0,3754,4657
chr13	40345157	40353351	B_Cells_Pritchard.1455613	0	-	40345157	40353351	0	2	5799,186	0,8008
chr13	40345171	40345822	melanoma_Garraway_short_term_cultures.29276	0	.	40345171	40345822	0	1	651	0
chr13	40345171	40353989	HepG2_Caltech_ENCODE.15419	0	.	40345171	40353989	0	1	8818	0
chr13	40345173	40355656	REMC_MyoepithelialBreast.41346	0	.	40345173	40355656	0	1	10483	0
chr13	40345177	40349427	MCF7_Burge_Thompson.13002	0	.	40345177	40349427	0	1	4250	0
chr13	40345178	40352343	REMC_BreastStem.22412	0	.	40345178	40352343	0	1	7165	0
chr13	40345891	40354876	B_cells_Cheung.84522	0	.	40345891	40354876	0	1	8985	0
chr13	40346055	40349121	prostate_normal.25040	0	.	40346055	40349121	0	1	3066	0
chr13	40346234	40348523	CD4_Plagnol_activated.27485	0	.	40346234	40348523	0	1	2289	0
chr13	40346714	40347815	ZR751_Thompson.10444	0	.	40346714	40347815	0	1	1101	0
chr13	40347809	40349113	CD4_Plagnol_resting.26571	0	.	40347809	40349113	0	1	1304	0
chr13	40348631	40349120	liver_polyA+.58995	0	.	40348631	40349120	0	1	489	0
chr13	40348762	40349155	HeLa_polyA+_Chen.15689	0	.	40348762	40349155	0	1	393	0
chr13	40348817	40349468	CD4_Plagnol_activated.27486	0	.	40348817	40349468	0	1	651	0
chr13	40348877	40349709	melanoma_Garraway_short_term_cultures.29278	0	.	40348877	40349709	0	1	832	0
chr13	40349523	40355674	prostate_carcinoma.42831	0	+	40349523	40355674	0	2	3860,238	0,5913
chr13	40349561	40355696	H1_polyA+.49837	0	.	40349561	40355696	0	1	6135	0
chr13	40349838	40351246	melanoma_Garraway_short_term_cultures.29279	0	.	40349838	40351246	0	1	1408	0
chr13	40350000	40351408	prostate_normal.25042	0	.	40350000	40351408	0	1	1408	0
chr13	40350046	40353543	MCF7_Burge_Thompson.13005	0	.	40350046	40353543	0	1	3497	0
chr13	40350720	40351311	T47D_Burge_Thompson.12368	0	.	40350720	40351311	0	1	591	0
chr13	40350840	40351472	HeLa_polyA+_Chen.15691	0	.	40350840	40351472	0	1	632	0
chr13	40350944	40351333	CD4_Snyder.33166	0	.	40350944	40351333	0	1	389	0
chr13	40352536	40354230	REMC_BreastStem.22413	0	.	40352536	40354230	0	1	1694	0
chr13	40352678	40353345	CD4_Plagnol_resting.26573	0	.	40352678	40353345	0	1	667	0
chr13	40352694	40353702	BT474_Burge_Thompson.14288	0	.	40352694	40353702	0	1	1008	0
chr13	40352764	40353506	BT20_Thompson.9218	0	.	40352764	40353506	0	1	742	0
chr13	40352768	40353355	T47D_Burge_Thompson.12369	0	.	40352768	40353355	0	1	587	0
chr13	40354945	40356043	HepG2_Caltech_ENCODE.15421	0	.	40354945	40356043	0	1	1098	0
chr13	40356836	40360868	REMC_LuminalBreast.44194	0	.	40356836	40360868	0	1	4032	0
chr13	40356851	40358038	HepG2_Caltech_ENCODE.15422	0	.	40356851	40358038	0	1	1187	0
chr13	40356858	40357956	REMC_MyoepithelialBreast.41348	0	.	40356858	40357956	0	1	1098	0
chr13	40356865	40359301	B_cells_Cheung.84519	0	.	40356865	40359301	0	1	2436	0
chr13	40356873	40359253	B_Cells_Pritchard.1455623	0	+	40356873	40359253	0	1	2380	0
chr13	40356879	40358341	H1_polyA+.49839	0	.	40356879	40358341	0	1	1462	0
chr13	40357319	40359125	REMC_BreastStem.22542	0	.	40357319	40359125	0	1	1806	0
chr13	40358037	40359598	REMC_MyoepithelialBreast.41349	0	.	40358037	40359598	0	1	1561	0
chr13	40358515	40359231	H1_polyA+.49840	0	.	40358515	40359231	0	1	716	0
chr13	40358664	40359157	melanoma_Garraway_short_term_cultures.29286	0	.	40358664	40359157	0	1	493	0
chr13	40359233	40360082	REMC_BreastStem.22543	0	.	40359233	40360082	0	1	849	0
chr13	40359377	40359854	B_cells_Cheung.84520	0	.	40359377	40359854	0	1	477	0
chr13	40364942	40372333	REMC_LuminalBreast.44199	0	.	40364942	40372333	0	1	7391	0
chr13	40365204	40366164	B_cells_Cheung.84523	0	.	40365204	40366164	0	1	960	0
chr13	40365219	40366339	H1_polyA+.49842	0	.	40365219	40366339	0	1	1120	0
chr13	40365813	40366166	REMC_MyoepithelialBreast.41353	0	.	40365813	40366166	0	1	353	0
chr13	40373258	40373565	REMC_LuminalBreast.44200	0	.	40373258	40373565	0	1	307	0
chr13	40400129	40400690	CD4_Plagnol_activated.27508	0	.	40400129	40400690	0	1	561	0
chr13	40400136	40400636	B_cells_Cheung.84559	0	.	40400136	40400636	0	1	500	0
chr13	40566630	40568287	REMC_LuminalBreast.44374	0	.	40566630	40568287	0	1	1657	0
chr13	40569136	40570070	REMC_BreastStem.22416	0	.	40569136	40570070	0	1	934	0
chr13	40569144	40570431	REMC_LuminalBreast.44375	0	.	40569144	40570431	0	1	1287	0
chr13	40569931	40571505	REMC_MyoepithelialBreast.41391	0	.	40569931	40571505	0	1	1574	0
chr13	40575855	40577168	REMC_BreastStem.22418	0	.	40575855	40577168	0	1	1313	0
chr13	40575992	40577518	REMC_LuminalBreast.44377	0	.	40575992	40577518	0	1	1526	0
chr13	40678397	40680362	H1_polyA+.49900	0	.	40678397	40680362	0	1	1965	0
chr13	40679661	40680726	REMC_LuminalBreast.44265	0	.	40679661	40680726	0	1	1065	0
chr13	40679882	40680697	REMC_MyoepithelialBreast.41416	0	.	40679882	40680697	0	1	815	0
chr13	40680475	40682885	H1_polyA+.49901	0	.	40680475	40682885	0	1	2410	0
chr13	40680778	40682928	REMC_LuminalBreast.44266	0	.	40680778	40682928	0	1	2150	0
chr13	40684468	40685228	REMC_MyoepithelialBreast.41418	0	.	40684468	40685228	0	1	760	0
chr13	40685957	40687184	REMC_LuminalBreast.44268	0	.	40685957	40687184	0	1	1227	0
chr13	40944664	40945755	REMC_LuminalBreast.44289	0	.	40944664	40945755	0	1	1091	0
chr13	40973888	40975601	REMC_LuminalBreast.44291	0	.	40973888	40975601	0	1	1713	0
chr13	41017715	41035585	pHIT000112662	0	+	41017715	41035585	0	4	34,75,148,103	0,7152,13112,17767
chr13	41035070	41036877	B_cells_Cheung.84695	0	.	41035070	41036877	0	1	1807	0
chr13	41035136	41036467	prostate_carcinoma.42899	0	.	41035136	41036467	0	1	1331	0
chr13	41435296	41435897	B_Cells_Pritchard.1456817	0	.	41435296	41435897	0	1	601	0
chr13	41510364	41511291	H1_polyA+.49944	0	.	41510364	41511291	0	1	927	0
chr13	41740795	41741770	HepG2_Caltech_ENCODE.15470	0	.	41740795	41741770	0	1	975	0
chr13	41805049	41806550	B_Cells_Pritchard.1457805	0	.	41805049	41806550	0	1	1501	0
chr13	41805077	41807608	REMC_MyoepithelialBreast.41479	0	.	41805077	41807608	0	1	2531	0
chr13	41805443	41806113	CD4_Plagnol_resting.26647	0	.	41805443	41806113	0	1	670	0
chr13	41805531	41806884	B_cells_Cheung.85085	0	.	41805531	41806884	0	2	894,396	0,957
chr13	41884090	41884670	B_Cells_Pritchard.1458145	0	.	41884090	41884670	0	1	580	0
chr13	41886525	41887943	B_Cells_Pritchard.1458151	0	.	41886525	41887943	0	1	1418	0
chr13	41895874	41897038	B_Cells_Pritchard.1458195	0	.	41895874	41897038	0	1	1164	0
chr13	41910605	41911132	CD4_Plagnol_activated.27588	0	.	41910605	41911132	0	1	527	0
chr13	41918673	41923905	B_cells_Cheung.84972	0	.	41918673	41923905	0	1	5232	0
chr13	41935587	41936437	B_cells_Cheung.84986	0	.	41935587	41936437	0	1	850	0
chr13	41936556	41943050	B_cells_Cheung.84987	0	.	41936556	41943050	0	1	6494	0
chr13	41941495	41942536	B_Cells_Pritchard.1458251	0	.	41941495	41942536	0	1	1041	0
chr13	41943169	41948676	B_cells_Cheung.84988	0	.	41943169	41948676	0	1	5507	0
chr13	41948972	41954980	B_cells_Cheung.84959	0	.	41948972	41954980	0	1	6008	0
chr13	41949165	41958295	B_Cells_Pritchard.1458595	0	-	41949165	41958295	0	3	2009,651,2443	0,6034,6687
chr13	41957439	41958931	B_cells_Cheung.84960	0	.	41957439	41958931	0	1	1492	0
chr13	41961249	41961680	B_Cells_Pritchard.1458489	0	.	41961249	41961680	0	1	431	0
chr13	41964135	41965170	B_cells_Cheung.84995	0	.	41964135	41965170	0	1	1035	0
chr13	41964315	41965113	B_Cells_Pritchard.1458503	0	.	41964315	41965113	0	1	798	0
chr13	41968025	41968485	B_cells_Cheung.85000	0	.	41968025	41968485	0	1	460	0
chr13	41968577	41969113	B_cells_Cheung.85001	0	.	41968577	41969113	0	1	536	0
chr13	41968638	41968996	B_Cells_Pritchard.1458521	0	.	41968638	41968996	0	1	358	0
chr13	42019309	42019903	B_Cells_Pritchard.1458687	0	.	42019309	42019903	0	1	594	0
chr13	42085437	42157460	pHIT000023145	0	-	42085437	42157460	0	4	303,65,81,13	0,65734,66225,72010
chr13	42123351	42215542	pHIT000112669	0	-	42123351	42215542	0	5	158,101,81,151,130	0,27224,28311,69335,92061
chr13	42150474	42215542	pHIT000112670	0	-	42150474	42215542	0	4	202,81,151,130	0,1188,42212,64938
chr13	42271995	42280260	H1_polyA+.50916	0	.	42271995	42280260	0	1	8265	0
chr13	42282444	42286902	B_Cells_Pritchard.1459425	0	-	42282444	42286902	0	2	1534,2375	0,2083
chr13	42282460	42285401	B_cells_Cheung.85044	0	.	42282460	42285401	0	1	2941	0
chr13	42282460	42286599	B_cells_Cheung.85043	0	-	42282460	42286599	0	3	1518,874,131	0,2067,4008
chr13	42282556	42284019	REMC_BreastStem.22484	0	.	42282556	42284019	0	1	1463	0
chr13	42282556	42285311	REMC_BreastStem.22485	0	-	42282556	42285311	0	2	1422,784	0,1971
chr13	42283375	42284121	MeI_Garraway.7760	0	.	42283375	42284121	0	1	746	0
chr13	42283394	42283701	H1_rRNA-depleted_UCSD_REMC.38774	0	.	42283394	42283701	0	1	307	0
chr13	42283442	42283935	H9_polyA+.19637	0	.	42283442	42283935	0	1	493	0
chr13	42290492	42290873	B_cells_Cheung.85047	0	.	42290492	42290873	0	1	381	0
chr13	42321890	42340307	H1_polyA+.50918	0	-	42321890	42340307	0	4	938,78,306,3749	0,12333,14054,14668
chr13	42333940	42340237	H9_polyA+.19651	0	.	42333940	42340237	0	1	6297	0
chr13	42336765	42340233	H9_polyA-_Chen.6245	0	.	42336765	42340233	0	1	3468	0
chr13	42336900	42338554	NEC_from_H9.32642	0	-	42336900	42338554	0	2	1045,60	0,1594
chr13	42352056	42352635	B_cells_Cheung.85051	0	.	42352056	42352635	0	1	579	0
chr13	43494469	43502598	Rinn_00021470	0	+	43494469	43502598	0	3	335,73,2158	0,4488,5971
chr13	43494470	43502599	NR_026955	0	+	43494470	43502599	0	3	334,72,2158	0,4488,5971
chr13	43494623	43502073	ENST00000439707	0	+	43494623	43502073	0	3	181,72,1632	0,4335,5818
chr13	43494623	43502073	HIT000004415	0	+	43494623	43502073	0	3	181,72,1632	0,4335,5818
chr13	43494624	43502525	REMC_LuminalBreast.44381	0	+	43494624	43502525	0	3	180,72,2084	0,4334,5817
chr13	43497453	43502073	Rinn_00021543	0	+	43497453	43502073	0	2	1577,1633	0,2987
chr13	43497454	43502073	ENST00000423211	0	+	43497454	43502073	0	2	1576,1632	0,2987
chr13	43497454	43502073	HIT000004412	0	+	43497454	43502073	0	2	1576,1632	0,2987
chr13	43501501	43502045	MDAMB468_Thompson.10691	0	.	43501501	43502045	0	1	544	0
chr13	43518322	43519012	B_Cells_Pritchard.1462311	0	.	43518322	43519012	0	1	690	0
chr13	43575948	43579904	Rinn_00021984	0	-	43575948	43579904	0	3	2645,127,92	0,3278,3864
chr13	43638276	43669106	pHIT000086992	0	-	43638276	43669106	0	4	127,125,52,35	0,20286,22142,30795
chr13	43644924	43645550	BT20_Thompson.9286	0	.	43644924	43645550	0	1	626	0
chr13	43703677	43704732	prostate_carcinoma.43019	0	.	43703677	43704732	0	1	1055	0
chr13	43703813	43704261	liver_polyA+.59322	0	.	43703813	43704261	0	1	448	0
chr13	43704060	43708195	ENST00000421190	0	-	43704060	43708195	0	2	234,89	0,4046
chr13	43713359	43714953	prostate_carcinoma.43027	0	.	43713359	43714953	0	1	1594	0
chr13	43714030	43715535	REMC_LuminalBreast.44384	0	.	43714030	43715535	0	1	1505	0
chr13	43715125	43715811	prostate_carcinoma.43028	0	.	43715125	43715811	0	1	686	0
chr13	43733105	43735066	HIT000018533	0	-	43733105	43735066	0	1	1961	0
chr13	43760539	43761342	prostate_carcinoma.43030	0	.	43760539	43761342	0	1	803	0
chr13	43760658	43762377	REMC_LuminalBreast.44385	0	.	43760658	43762377	0	1	1719	0
chr13	43763788	43765649	REMC_LuminalBreast.44388	0	.	43763788	43765649	0	1	1861	0
chr13	43777569	43781529	REMC_LuminalBreast.44398	0	.	43777569	43781529	0	1	3960	0
chr13	43777988	43781842	REMC_MyoepithelialBreast.41482	0	.	43777988	43781842	0	1	3854	0
chr13	43778805	43779800	REMC_BreastStem.22496	0	.	43778805	43779800	0	1	995	0
chr13	43778812	43780502	melanoma_Garraway_short_term_cultures.29407	0	.	43778812	43780502	0	1	1690	0
chr13	43778837	43779932	HeLa_polyA+_Chen.15739	0	.	43778837	43779932	0	1	1095	0
chr13	43778868	43779307	prostate_normal.25194	0	.	43778868	43779307	0	1	439	0
chr13	43779449	43779855	prostate_normal.25195	0	.	43779449	43779855	0	1	406	0
chr13	43779452	43779851	MIP101.29549	0	.	43779452	43779851	0	1	399	0
chr13	43789364	43790515	REMC_LuminalBreast.44396	0	.	43789364	43790515	0	1	1151	0
chr13	43791989	43793174	prostate_carcinoma.43036	0	.	43791989	43793174	0	1	1185	0
chr13	43792819	43793163	HeLa_polyA+_Chen.15743	0	.	43792819	43793163	0	1	344	0
chr13	43871843	43878097	HepG2_Caltech_ENCODE.15488	0	-	43871843	43878097	0	3	3622,220,348	0,4684,5906
chr13	43871843	43876965	HepG2_Caltech_ENCODE.15486	0	.	43871843	43876965	0	1	5122	0
chr13	43872359	43878101	prostate_carcinoma.43084	0	-	43872359	43878101	0	3	732,2936,352	0,1452,5390
chr13	43873672	43878155	BT474_Burge_Thompson.14367	0	-	43873672	43878155	0	2	3075,406	0,4077
chr13	43873734	43878092	H1_polyA+.50143	0	-	43873734	43878092	0	3	1731,220,343	0,2793,4015
chr13	43873811	43878185	prostate_carcinoma.43083	0	.	43873811	43878185	0	1	4374	0
chr13	43873828	43878099	prostate_normal.25203	0	-	43873828	43878099	0	2	2919,350	0,3921
chr13	43873828	43878099	prostate_normal.25201	0	.	43873828	43878099	0	1	4271	0
chr13	43873871	43878104	MIP101.29560	0	.	43873871	43878104	0	1	4233	0
chr13	43874076	43878091	Rinn_00021986	0	-	43874076	43878091	0	3	1389,221,343	0,2450,3672
chr13	43875245	43876789	REMC_MyoepithelialBreast.41490	0	.	43875245	43876789	0	1	1544	0
chr13	43875588	43876252	liver_polyA+.59337	0	.	43875588	43876252	0	1	664	0
chr13	43876340	43878055	liver_polyA+.59338	0	-	43876340	43878055	0	2	407,306	0,1409
chr13	43877020	43878097	HepG2_Caltech_ENCODE.15487	0	.	43877020	43878097	0	1	1077	0
chr13	43877400	43878055	liver_polyA+.59339	0	.	43877400	43878055	0	1	655	0
chr13	43881423	43882507	REMC_MyoepithelialBreast.41491	0	.	43881423	43882507	0	1	1084	0
chr13	43887470	43888698	REMC_LuminalBreast.44408	0	.	43887470	43888698	0	1	1228	0
chr13	43892001	43893378	REMC_LuminalBreast.44410	0	.	43892001	43893378	0	1	1377	0
chr13	43892636	43893559	REMC_MyoepithelialBreast.41493	0	.	43892636	43893559	0	1	923	0
chr13	43892673	43893914	REMC_BreastStem.22500	0	.	43892673	43893914	0	1	1241	0
chr13	43894012	43899772	REMC_BreastStem.22501	0	-	43894012	43899772	0	3	2509,1102,1079	0,3370,4681
chr13	43894012	43897175	REMC_BreastStem.22502	0	.	43894012	43897175	0	1	3163	0
chr13	43897444	43898531	REMC_MyoepithelialBreast.41494	0	.	43897444	43898531	0	1	1087	0
chr13	44049625	44051298	HIT000094296	0	+	44049625	44051298	0	1	1673	0
chr13	44049814	44050154	A549_Myers.34426	0	.	44049814	44050154	0	1	340	0
chr13	44156634	44188229	BT20_Thompson.9292	0	-	44156634	44188229	0	2	358,793	0,30802
chr13	44236571	44236931	B_Cells_Pritchard.1464321	0	.	44236571	44236931	0	1	360	0
chr13	44271638	44281766	ENST00000414562	0	-	44271638	44281766	0	3	1503,311,222	0,5217,9906
chr13	44271638	44281767	HIT000013346	0	-	44271638	44281767	0	3	1503,311,223	0,5217,9906
chr13	44289264	44289852	A549_Myers.34429	0	.	44289264	44289852	0	1	588	0
chr13	44375616	44382937	pHIT000086863	0	-	44375616	44382937	0	2	457,50	0,7271
chr13	44537554	44538631	H1_polyA+.50182	0	.	44537554	44538631	0	1	1077	0
chr13	44580105	44580425	B_Cells_Pritchard.1465025	0	.	44580105	44580425	0	1	320	0
chr13	44765362	44766629	REMC_BreastStem.22532	0	.	44765362	44766629	0	1	1267	0
chr13	44766248	44766665	B_cells_Cheung.85328	0	.	44766248	44766665	0	1	417	0
chr13	44768331	44770843	H1_polyA+.50245	0	.	44768331	44770843	0	1	2512	0
chr13	44768402	44770949	REMC_BreastStem.22533	0	.	44768402	44770949	0	1	2547	0
chr13	44769569	44770810	prostate_carcinoma.43156	0	.	44769569	44770810	0	1	1241	0
chr13	44769589	44770884	MIP101.29629	0	.	44769589	44770884	0	1	1295	0
chr13	44769907	44770771	melanoma_Garraway_short_term_cultures.29443	0	.	44769907	44770771	0	1	864	0
chr13	44770373	44770856	B_Cells_Pritchard.1465397	0	.	44770373	44770856	0	1	483	0
chr13	44774513	44775941	REMC_MyoepithelialBreast.41617	0	.	44774513	44775941	0	1	1428	0
chr13	44774666	44782042	REMC_BreastStem.22536	0	.	44774666	44782042	0	1	7376	0
chr13	44782336	44786706	REMC_LuminalBreast.44612	0	.	44782336	44786706	0	1	4370	0
chr13	44782341	44786706	REMC_MyoepithelialBreast.41619	0	.	44782341	44786706	0	1	4365	0
chr13	44783492	44784402	B_Cells_Pritchard.1784105	0	+	44783492	44784402	0	1	910	0
chr13	44783690	44784469	REMC_BreastStem.22538	0	.	44783690	44784469	0	1	779	0
chr13	44786903	44800519	REMC_MyoepithelialBreast.41620	0	.	44786903	44800519	0	1	13616	0
chr13	44786933	44789490	REMC_LuminalBreast.44613	0	.	44786933	44789490	0	1	2557	0
chr13	44787303	44790792	REMC_BreastStem.22540	0	.	44787303	44790792	0	1	3489	0
chr13	44789609	44800498	REMC_LuminalBreast.44614	0	.	44789609	44800498	0	1	10889	0
chr13	44791932	44798993	REMC_BreastStem.22621	0	.	44791932	44798993	0	1	7061	0
chr13	44792063	44794697	H1_polyA+.50718	0	.	44792063	44794697	0	1	2634	0
chr13	44792175	44792822	melanoma_Garraway_short_term_cultures.29448	0	.	44792175	44792822	0	1	647	0
chr13	44794963	44796303	BT20_Thompson.9306	0	.	44794963	44796303	0	1	1340	0
chr13	44795318	44796320	B_cells_Cheung.85344	0	.	44795318	44796320	0	1	1002	0
chr13	44795325	44796281	prostate_carcinoma.45092	0	.	44795325	44796281	0	1	956	0
chr13	44795688	44796217	H9_polyA+.19705	0	.	44795688	44796217	0	1	529	0
chr13	44795722	44796312	melanoma_Garraway_short_term_cultures.29450	0	.	44795722	44796312	0	1	590	0
chr13	44807469	44808097	HeLa_polyA-_Chen.8270	0	.	44807469	44808097	0	1	628	0
chr13	44814543	44815313	K562.19802	0	.	44814543	44815313	0	1	770	0
chr13	44816668	44817204	HeLa_polyA+_Chen.15758	0	.	44816668	44817204	0	1	536	0
chr13	44820416	44847790	khalil_605	0	.	44820416	44847790	0	3	195,2463,306	0,22056,27068
chr13	44821276	44824627	B_cells_Cheung.86549	0	.	44821276	44824627	0	1	3351	0
chr13	44821339	44822158	melanoma_Garraway_short_term_cultures.29464	0	.	44821339	44822158	0	1	819	0
chr13	44822914	44824619	H1_polyA+.50732	0	.	44822914	44824619	0	1	1705	0
chr13	44823404	44824347	K562.19804	0	.	44823404	44824347	0	1	943	0
chr13	44823410	44824476	H9_polyA+.19717	0	.	44823410	44824476	0	1	1066	0
chr13	44823414	44824622	melanoma_Garraway_short_term_cultures.29467	0	.	44823414	44824622	0	1	1208	0
chr13	44823518	44824554	CD4_Plagnol_activated.32786	0	.	44823518	44824554	0	1	1036	0
chr13	44824154	44824600	B_Cells_Pritchard.1784459	0	+	44824154	44824600	0	1	446	0
chr13	44824766	44850059	REMC_LuminalBreast.44618	0	-	44824766	44850059	0	2	5046,18461	0,6832
chr13	44824768	44831296	REMC_MyoepithelialBreast.41629	0	.	44824768	44831296	0	1	6528	0
chr13	44828538	44831436	B_cells_Cheung.86551	0	.	44828538	44831436	0	1	2898	0
chr13	44828544	44836549	B_Cells_Pritchard.1784477	0	+	44828544	44836549	0	4	2804,178,278,2843	0,3038,4178,5162
chr13	44830013	44850059	REMC_LuminalBreast.44617	0	.	44830013	44850059	0	1	20046	0
chr13	44831574	44836534	H1_polyA+.50733	0	.	44831574	44836534	0	1	4960	0
chr13	44831833	44838006	B_cells_Cheung.86552	0	.	44831833	44838006	0	4	361,1170,2236,1299	0,468,1901,4874
chr13	44832784	44833876	HepG2_Caltech_ENCODE.15513	0	.	44832784	44833876	0	1	1092	0
chr13	44833581	44836471	REMC_BreastStem.22608	0	.	44833581	44836471	0	1	2890	0
chr13	44833740	44835755	brain_AmbionMAQC.19195	0	.	44833740	44835755	0	1	2015	0
chr13	44833773	44835648	MeWo_Garraway.15657	0	.	44833773	44835648	0	1	1875	0
chr13	44833811	44836491	melanoma_Garraway_short_term_cultures.29476	0	.	44833811	44836491	0	1	2680	0
chr13	44833816	44835209	CD4_Plagnol_activated.32792	0	.	44833816	44835209	0	1	1393	0
chr13	44834028	44835323	H9_polyA+.19720	0	.	44834028	44835323	0	1	1295	0
chr13	44834065	44835213	HepG2_Caltech_ENCODE.15514	0	.	44834065	44835213	0	1	1148	0
chr13	44836698	44837937	REMC_BreastStem.22609	0	.	44836698	44837937	0	1	1239	0
chr13	44836703	44837924	HepG2_Caltech_ENCODE.15515	0	.	44836703	44837924	0	1	1221	0
chr13	44836717	44838030	H1_polyA+.50741	0	.	44836717	44838030	0	1	1313	0
chr13	44836897	44837939	prostate_normal.25470	0	.	44836897	44837939	0	1	1042	0
chr13	44836905	44837940	melanoma_Garraway_short_term_cultures.29477	0	.	44836905	44837940	0	1	1035	0
chr13	44837108	44838397	B_Cells_Pritchard.1784491	0	+	44837108	44838397	0	2	883,80	0,1209
chr13	44838189	44839212	B_Cells_Pritchard.1784493	0	+	44838189	44839212	0	3	114,94,228	0,554,795
chr13	44839424	44842795	B_Cells_Pritchard.1784497	0	+	44839424	44842795	0	2	2421,67	0,3304
chr13	44839455	44840001	H9_polyA+.19721	0	.	44839455	44840001	0	1	546	0
chr13	44840235	44841108	H9_polyA+.19722	0	.	44840235	44841108	0	1	873	0
chr13	44840308	44842650	REMC_BreastStem.22600	0	.	44840308	44842650	0	1	2342	0
chr13	44840655	44841167	HIT000067331	0	+	44840655	44841167	0	1	512	0
chr13	44840763	44841864	MeWo_Garraway.15660	0	.	44840763	44841864	0	1	1101	0
chr13	44841869	44850553	B_Cells_Pritchard.1784499	0	+	44841869	44850553	0	3	161,4837,180	0,1433,8504
chr13	44842959	44845274	CD4_Plagnol_resting.26839	0	.	44842959	44845274	0	1	2315	0
chr13	44843071	44844499	REMC_BreastStem.22610	0	.	44843071	44844499	0	1	1428	0
chr13	44843902	44846053	brain_AmbionMAQC.19200	0	.	44843902	44846053	0	1	2151	0
chr13	44843903	44846017	CD4_Plagnol_activated.32797	0	.	44843903	44846017	0	1	2114	0
chr13	44843930	44845101	melanoma_Garraway_short_term_cultures.29482	0	.	44843930	44845101	0	1	1171	0
chr13	44843980	44846086	liver_polyA+.59379	0	.	44843980	44846086	0	1	2106	0
chr13	44843995	44845885	K562.19820	0	.	44843995	44845885	0	1	1890	0
chr13	44844024	44844586	NEC_from_H9.32705	0	.	44844024	44844586	0	1	562	0
chr13	44844052	44844393	A549_Myers.34453	0	.	44844052	44844393	0	1	341	0
chr13	44844076	44844604	T47D_Burge_Thompson.12485	0	.	44844076	44844604	0	1	528	0
chr13	44844122	44846050	H9_polyA+.19724	0	.	44844122	44846050	0	1	1928	0
chr13	44844192	44844782	HeLa_polyA+_Chen.15766	0	.	44844192	44844782	0	1	590	0
chr13	44844203	44844694	breast_Burge.17399	0	.	44844203	44844694	0	1	491	0
chr13	44844337	44844838	B_Cells_Pritchard.1784501	0	-	44844337	44844838	0	2	202,101	0,400
chr13	44846397	44849949	REMC_BreastStem.22601	0	.	44846397	44849949	0	1	3552	0
chr13	44847068	44850776	HIT000011695	0	-	44847068	44850776	0	2	2282,112	0,3596
chr13	44848461	44849011	melanoma_Garraway_short_term_cultures.29486	0	.	44848461	44849011	0	1	550	0
chr13	44849196	44849809	brain_AmbionMAQC.19205	0	.	44849196	44849809	0	1	613	0
chr13	44850304	44855370	Rinn_00022271	0	-	44850304	44855370	0	4	481,601,142,22	0,1144,2885,5044
chr13	44850350	44852502	REMC_LuminalBreast.44619	0	.	44850350	44852502	0	1	2152	0
chr13	44850355	44852501	REMC_BreastStem.22612	0	.	44850355	44852501	0	1	2146	0
chr13	44850388	44852398	REMC_MyoepithelialBreast.41632	0	.	44850388	44852398	0	1	2010	0
chr13	44850412	44850820	melanoma_Garraway_short_term_cultures.29488	0	.	44850412	44850820	0	1	408	0
chr13	44851086	44851462	K562.19823	0	.	44851086	44851462	0	1	376	0
chr13	44851328	44855370	Rinn_00022272	0	-	44851328	44855370	0	3	721,142,22	0,1861,4020
chr13	44852123	44852460	B_cells_Cheung.86561	0	.	44852123	44852460	0	1	337	0
chr13	44852137	44852475	B_Cells_Pritchard.1784523	0	+	44852137	44852475	0	1	338	0
chr13	44856265	44859128	HIT000004974	0	+	44856265	44859128	0	2	1857,235	0,2628
chr13	44863903	44864286	kidney_Gilad.38503	0	.	44863903	44864286	0	1	383	0
chr13	44863908	44864319	testes_Burge.22766	0	.	44863908	44864319	0	1	411	0
chr13	44891971	44893242	prostate_normal.25481	0	.	44891971	44893242	0	1	1271	0
chr13	44892450	44893133	B_cells_Cheung.85361	0	.	44892450	44893133	0	1	683	0
chr13	44892820	44894408	REMC_BreastStem.22598	0	.	44892820	44894408	0	1	1588	0
chr13	44898217	44900653	REMC_LuminalBreast.44452	0	.	44898217	44900653	0	1	2436	0
chr13	44898451	44900198	REMC_MyoepithelialBreast.41645	0	.	44898451	44900198	0	1	1747	0
chr13	44898508	44900049	liver_polyA+.59424	0	.	44898508	44900049	0	1	1541	0
chr13	44900797	44903343	REMC_LuminalBreast.44453	0	.	44900797	44903343	0	1	2546	0
chr13	44903729	44906140	REMC_LuminalBreast.44454	0	.	44903729	44906140	0	1	2411	0
chr13	44913545	44914484	REMC_LuminalBreast.44456	0	.	44913545	44914484	0	1	939	0
chr13	44916414	44920395	REMC_LuminalBreast.44458	0	.	44916414	44920395	0	1	3981	0
chr13	45142319	45143902	B_cells_Cheung.85405	0	.	45142319	45143902	0	1	1583	0
chr13	45142319	45143408	B_Cells_Pritchard.1466363	0	.	45142319	45143408	0	1	1089	0
chr13	45147705	45157296	B_Cells_Pritchard.1466415	0	-	45147705	45157296	0	5	3407,329,2071,118,97	0,3409,3851,6732,9494
chr13	45366799	45405868	pHIT000023166	0	+	45366799	45405868	0	4	82,130,122,203	0,14816,15773,38866
chr13	45381560	45405868	pHIT000112698	0	+	45381560	45405868	0	2	157,224	0,24084
chr13	45586391	45587607	brain_AmbionMAQC.19104	0	.	45586391	45587607	0	1	1216	0
chr13	45586493	45586877	B_cells_Cheung.85497	0	.	45586493	45586877	0	1	384	0
chr13	45591188	45594828	brain_AmbionMAQC.19106	0	.	45591188	45594828	0	1	3640	0
chr13	45591992	45594835	HIT000021090	0	+	45591992	45594835	0	1	2843	0
chr13	45593473	45594572	B_Cells_Pritchard.1467487	0	.	45593473	45594572	0	1	1099	0
chr13	45593796	45594341	B_cells_Cheung.85500	0	.	45593796	45594341	0	1	545	0
chr13	45593807	45595301	REMC_MyoepithelialBreast.41551	0	.	45593807	45595301	0	1	1494	0
chr13	45769796	45771969	REMC_MyoepithelialBreast.41662	0	.	45769796	45771969	0	1	2173	0
chr13	45776370	45777764	REMC_MyoepithelialBreast.41664	0	.	45776370	45777764	0	1	1394	0
chr13	45787445	45792180	REMC_MyoepithelialBreast.41659	0	.	45787445	45792180	0	1	4735	0
chr13	45792538	45794255	REMC_MyoepithelialBreast.41670	0	.	45792538	45794255	0	1	1717	0
chr13	45792574	45792915	B_Cells_Pritchard.1468045	0	.	45792574	45792915	0	1	341	0
chr13	45803581	45804204	B_Cells_Pritchard.1468091	0	.	45803581	45804204	0	1	623	0
chr13	45804996	45807750	B_cells_Cheung.85584	0	.	45804996	45807750	0	1	2754	0
chr13	45805021	45808483	B_Cells_Pritchard.1468095	0	+	45805021	45808483	0	1	3462	0
chr13	45808596	45811947	B_Cells_Pritchard.1468099	0	+	45808596	45811947	0	1	3351	0
chr13	45927269	45927764	melanoma_Garraway_short_term_cultures.29540	0	.	45927269	45927764	0	1	495	0
chr13	46411386	46413754	B_cells_Cheung.85707	0	.	46411386	46413754	0	1	2368	0
chr13	46412787	46413266	liver_polyA+.59599	0	.	46412787	46413266	0	1	479	0
chr13	46446348	46447694	liver_polyA+.59603	0	+	46446348	46447694	0	2	120,858	0,488
chr13	46446813	46447936	B_cells_Cheung.85723	0	.	46446813	46447936	0	1	1123	0
chr13	47261670	47263045	REMC_LuminalBreast.44526	0	.	47261670	47263045	0	1	1375	0
chr13	47272802	47273186	B_cells_Cheung.85741	0	.	47272802	47273186	0	1	384	0
chr13	47291072	47292978	REMC_LuminalBreast.44532	0	.	47291072	47292978	0	1	1906	0
chr13	47312735	47314261	REMC_MyoepithelialBreast.41756	0	.	47312735	47314261	0	1	1526	0
chr13	47344283	47344952	REMC_LuminalBreast.44549	0	.	47344283	47344952	0	1	669	0
chr13	47348659	47350702	REMC_MyoepithelialBreast.41762	0	.	47348659	47350702	0	1	2043	0
chr13	47352415	47353456	REMC_MyoepithelialBreast.41763	0	.	47352415	47353456	0	1	1041	0
chr13	47357400	47361441	REMC_LuminalBreast.44555	0	.	47357400	47361441	0	1	4041	0
chr13	47357573	47359080	MIP101.29724	0	.	47357573	47359080	0	1	1507	0
chr13	47358143	47360472	H1_polyA+.50342	0	.	47358143	47360472	0	1	2329	0
chr13	47358464	47359154	B_cells_Cheung.85748	0	.	47358464	47359154	0	1	690	0
chr13	47358731	47359101	B_Cells_Pritchard.1471109	0	.	47358731	47359101	0	1	370	0
chr13	47358827	47359866	REMC_BreastStem.22651	0	.	47358827	47359866	0	1	1039	0
chr13	47358865	47361504	REMC_MyoepithelialBreast.41766	0	.	47358865	47361504	0	1	2639	0
chr13	47359962	47360953	B_cells_Cheung.85750	0	.	47359962	47360953	0	1	991	0
chr13	47364104	47367314	REMC_MyoepithelialBreast.41768	0	.	47364104	47367314	0	1	3210	0
chr13	47365277	47371982	REMC_LuminalBreast.44558	0	.	47365277	47371982	0	1	6705	0
chr13	47367921	47368551	MIP101.29728	0	.	47367921	47368551	0	1	630	0
chr13	47522785	47525172	BT20_Thompson.9344	0	.	47522785	47525172	0	1	2387	0
chr13	47524208	47525387	T47D_Burge_Thompson.12514	0	.	47524208	47525387	0	1	1179	0
chr13	47687640	47688729	REMC_LuminalBreast.44607	0	.	47687640	47688729	0	1	1089	0
chr13	47696095	47697473	REMC_LuminalBreast.44609	0	.	47696095	47697473	0	1	1378	0
chr13	47735310	47742416	REMC_MyoepithelialBreast.41822	0	.	47735310	47742416	0	1	7106	0
chr13	47739761	47742400	H1_polyA+.50432	0	.	47739761	47742400	0	1	2639	0
chr13	47740470	47742488	brain_AmbionMAQC.19155	0	.	47740470	47742488	0	1	2018	0
chr13	47740512	47742256	REMC_LuminalBreast.44625	0	.	47740512	47742256	0	1	1744	0
chr13	47740532	47742425	REMC_BreastStem.22822	0	.	47740532	47742425	0	1	1893	0
chr13	47764347	47770214	B_Cells_Pritchard.1471987	0	.	47764347	47770214	0	1	5867	0
chr13	47769748	47770995	H1_polyA+.50436	0	.	47769748	47770995	0	1	1247	0
chr13	48014146	48014705	B_Cells_Pritchard.1472511	0	.	48014146	48014705	0	1	559	0
chr13	48039555	48047504	B_Cells_Pritchard.1472613	0	+	48039555	48047504	0	2	5018,2803	0,5146
chr13	48039555	48047504	B_Cells_Pritchard.1472615	0	-	48039555	48047504	0	4	929,341,1970,2803	0,2422,2856,5146
chr13	48039717	48040535	B_cells_Cheung.85873	0	.	48039717	48040535	0	1	818	0
chr13	48039717	48042754	B_cells_Cheung.85875	0	-	48039717	48042754	0	2	767,310	0,2727
chr13	48045672	48046446	B_cells_Cheung.85879	0	.	48045672	48046446	0	1	774	0
chr13	48047728	48050482	B_cells_Cheung.85881	0	.	48047728	48050482	0	1	2754	0
chr13	48047732	48050351	B_Cells_Pritchard.1472617	0	+	48047732	48050351	0	1	2619	0
chr13	48047732	48063592	B_Cells_Pritchard.1472619	0	-	48047732	48063592	0	3	2264,2944,934	0,2417,14926
chr13	48049109	48050225	Rinn_00021651	0	-	48049109	48050225	0	2	887,77	0,1039
chr13	48049110	48050225	ENST00000425350	0	-	48049110	48050225	0	2	886,76	0,1039
chr13	48049133	48049999	HepG2_Caltech_ENCODE.15636	0	.	48049133	48049999	0	1	866	0
chr13	48050582	48051360	B_cells_Cheung.85882	0	.	48050582	48051360	0	1	778	0
chr13	48061882	48062353	B_cells_Cheung.85894	0	.	48061882	48062353	0	1	471	0
chr13	48151153	48151582	B_Cells_Pritchard.1472883	0	.	48151153	48151582	0	1	429	0
chr13	48151745	48152907	B_Cells_Pritchard.1472885	0	.	48151745	48152907	0	1	1162	0
chr13	48404182	48405146	REMC_LuminalBreast.44698	0	.	48404182	48405146	0	1	964	0
chr13	48684530	48687273	REMC_BreastStem.23098	0	.	48684530	48687273	0	1	2743	0
chr13	48684662	48686857	REMC_LuminalBreast.44702	0	.	48684662	48686857	0	1	2195	0
chr13	48685088	48686454	B_Cells_Pritchard.1474935	0	+	48685088	48686454	0	1	1366	0
chr13	48685105	48686104	REMC_MyoepithelialBreast.41889	0	.	48685105	48686104	0	1	999	0
chr13	48685273	48686134	B_cells_Cheung.86145	0	.	48685273	48686134	0	1	861	0
chr13	48696115	48696584	B_cells_Cheung.86148	0	.	48696115	48696584	0	1	469	0
chr13	48714220	48714980	H1_polyA+.50509	0	.	48714220	48714980	0	1	760	0
chr13	48715108	48716020	H1_polyA+.50510	0	.	48715108	48716020	0	1	912	0
chr13	48766784	48767558	REMC_LuminalBreast.44704	0	.	48766784	48767558	0	1	774	0
chr13	48767173	48768358	B_cells_Cheung.86012	0	.	48767173	48768358	0	1	1185	0
chr13	48767176	48768357	B_Cells_Pritchard.1474327	0	+	48767176	48768357	0	1	1181	0
chr13	48767183	48768307	CD4_Plagnol_activated.27886	0	.	48767183	48768307	0	1	1124	0
chr13	48767578	48768266	prostate_carcinoma.43457	0	.	48767578	48768266	0	1	688	0
chr13	48767608	48768331	CD4_Plagnol_resting.27033	0	.	48767608	48768331	0	1	723	0
chr13	48771628	48775173	REMC_BreastStem.22730	0	.	48771628	48775173	0	1	3545	0
chr13	48772059	48772365	B_cells_Cheung.86016	0	.	48772059	48772365	0	1	306	0
chr13	48772182	48773149	B_Cells_Pritchard.1474349	0	.	48772182	48773149	0	1	967	0
chr13	48774051	48774688	B_Cells_Pritchard.1474355	0	.	48774051	48774688	0	1	637	0
chr13	48774310	48775145	prostate_carcinoma.43460	0	.	48774310	48775145	0	1	835	0
chr13	48774364	48775244	REMC_MyoepithelialBreast.41897	0	.	48774364	48775244	0	1	880	0
chr13	48774783	48776320	REMC_LuminalBreast.44707	0	.	48774783	48776320	0	1	1537	0
chr13	48775137	48775616	B_cells_Cheung.86019	0	.	48775137	48775616	0	1	479	0
chr13	48775324	48776306	REMC_MyoepithelialBreast.41898	0	.	48775324	48776306	0	1	982	0
chr13	49109430	49117303	H1_polyA+.50538	0	.	49109430	49117303	0	1	7873	0
chr13	49112692	49117415	B_cells_Cheung.86160	0	.	49112692	49117415	0	1	4723	0
chr13	49117567	49118555	B_cells_Cheung.86161	0	.	49117567	49118555	0	1	988	0
chr13	49117617	49118477	H1_polyA+.50539	0	.	49117617	49118477	0	1	860	0
chr13	49118625	49120204	B_cells_Cheung.86162	0	.	49118625	49120204	0	1	1579	0
chr13	49118722	49120199	H1_polyA+.50540	0	.	49118722	49120199	0	1	1477	0
chr13	49123524	49124539	H1_polyA+.50542	0	.	49123524	49124539	0	1	1015	0
chr13	49123537	49124350	B_cells_Cheung.86164	0	.	49123537	49124350	0	1	813	0
chr13	49426357	49428682	REMC_MyoepithelialBreast.41956	0	.	49426357	49428682	0	1	2325	0
chr13	49426777	49430242	B_cells_Cheung.86257	0	.	49426777	49430242	0	1	3465	0
chr13	49426836	49431026	B_Cells_Pritchard.1475879	0	+	49426836	49431026	0	1	4190	0
chr13	49426854	49428806	REMC_BreastStem.22790	0	.	49426854	49428806	0	1	1952	0
chr13	49426903	49428724	prostate_normal.25424	0	.	49426903	49428724	0	1	1821	0
chr13	49426909	49427638	MCF10A_Thompson.9546	0	.	49426909	49427638	0	1	729	0
chr13	49427066	49449184	BT474_Burge_Thompson.14498	0	-	49427066	49449184	0	2	1966,715	0,21403
chr13	49427928	49429056	CD4_Plagnol_resting.27092	0	.	49427928	49429056	0	1	1128	0
chr13	49428257	49429173	CD4_Plagnol_activated.28001	0	.	49428257	49429173	0	1	916	0
chr13	49428263	49431132	prostate_carcinoma.43694	0	-	49428263	49431132	0	2	478,130	0,2739
chr13	49428341	49429165	brain_AmbionMAQC.19245	0	.	49428341	49429165	0	1	824	0
chr13	49428892	49431141	prostate_carcinoma.43696	0	.	49428892	49431141	0	1	2249	0
chr13	49429386	49431131	prostate_normal.25425	0	.	49429386	49431131	0	1	1745	0
chr13	49430367	49433427	B_cells_Cheung.86258	0	.	49430367	49433427	0	1	3060	0
chr13	49432104	49433239	prostate_normal.25426	0	+	49432104	49433239	0	2	74,305	0,830
chr13	49432931	49433312	B_Cells_Pritchard.1475735	0	+	49432931	49433312	0	1	381	0
chr13	49437325	49438522	REMC_LuminalBreast.44853	0	.	49437325	49438522	0	1	1197	0
chr13	49437633	49438622	B_cells_Cheung.86262	0	.	49437633	49438622	0	1	989	0
chr13	49437640	49438588	B_Cells_Pritchard.1475753	0	.	49437640	49438588	0	1	948	0
chr13	49438095	49438479	prostate_carcinoma.43701	0	.	49438095	49438479	0	1	384	0
chr13	49449836	49451662	prostate_normal.25431	0	.	49449836	49451662	0	1	1826	0
chr13	49449847	49451692	CD4_Plagnol_activated.28006	0	.	49449847	49451692	0	1	1845	0
chr13	49449881	49451676	B_cells_Cheung.86274	0	.	49449881	49451676	0	1	1795	0
chr13	49453447	49455201	REMC_LuminalBreast.44857	0	.	49453447	49455201	0	1	1754	0
chr13	49453521	49455392	B_cells_Cheung.86277	0	.	49453521	49455392	0	1	1871	0
chr13	49453555	49455157	prostate_carcinoma.43716	0	.	49453555	49455157	0	1	1602	0
chr13	49453680	49455191	REMC_MyoepithelialBreast.41960	0	.	49453680	49455191	0	1	1511	0
chr13	49453830	49455051	CD4_Plagnol_activated.28008	0	.	49453830	49455051	0	1	1221	0
chr13	49453912	49454799	BT474_Burge_Thompson.14501	0	.	49453912	49454799	0	1	887	0
chr13	49453920	49454764	prostate_normal.25434	0	.	49453920	49454764	0	1	844	0
chr13	49453936	49455132	REMC_BreastStem.22792	0	.	49453936	49455132	0	1	1196	0
chr13	49466727	49467044	CD4_Plagnol_activated.28016	0	.	49466727	49467044	0	1	317	0
chr13	49503108	49506670	H1_polyA+.50588	0	.	49503108	49506670	0	1	3562	0
chr13	49505029	49506678	B_cells_Cheung.86400	0	.	49505029	49506678	0	1	1649	0
chr13	49506925	49507422	H1_polyA+.50589	0	.	49506925	49507422	0	1	497	0
chr13	49507409	49508964	REMC_LuminalBreast.44873	0	.	49507409	49508964	0	1	1555	0
chr13	49507602	49520032	H1_polyA+.50590	0	.	49507602	49520032	0	1	12430	0
chr13	49507625	49511241	REMC_MyoepithelialBreast.41980	0	.	49507625	49511241	0	1	3616	0
chr13	49507744	49509473	REMC_BreastStem.22754	0	.	49507744	49509473	0	1	1729	0
chr13	49507995	49508843	melanoma_Garraway_short_term_cultures.29716	0	.	49507995	49508843	0	1	848	0
chr13	49508006	49520050	B_cells_Cheung.86398	0	.	49508006	49520050	0	1	12044	0
chr13	49508119	49509074	HeLa_polyA+_Chen.15882	0	.	49508119	49509074	0	1	955	0
chr13	49511761	49513175	HIT000092931	0	-	49511761	49513175	0	1	1414	0
chr13	49511840	49512215	HeLa_polyA+_Chen.15884	0	.	49511840	49512215	0	1	375	0
chr13	49511876	49512914	melanoma_Garraway_short_term_cultures.29720	0	.	49511876	49512914	0	1	1038	0
chr13	49512559	49513259	CD4_Snyder.33793	0	.	49512559	49513259	0	1	700	0
chr13	49512607	49513216	REMC_BreastStem.22757	0	.	49512607	49513216	0	1	609	0
chr13	49512681	49513148	K562.19973	0	.	49512681	49513148	0	1	467	0
chr13	49512693	49519958	REMC_LuminalBreast.44876	0	.	49512693	49519958	0	1	7265	0
chr13	49512705	49513454	prostate_carcinoma.43736	0	.	49512705	49513454	0	1	749	0
chr13	49512707	49513591	HeLa_polyA+_Chen.15886	0	.	49512707	49513591	0	1	884	0
chr13	49512725	49513914	BT20_Thompson.9394	0	.	49512725	49513914	0	1	1189	0
chr13	49512739	49513495	B_Cells_Pritchard.1480397	0	-	49512739	49513495	0	1	756	0
chr13	49512751	49513366	CD4_Plagnol_activated.28034	0	.	49512751	49513366	0	1	615	0
chr13	49521979	49522610	prostate_carcinoma.43541	0	.	49521979	49522610	0	1	631	0
chr13	49522029	49523871	B_cells_Cheung.86404	0	.	49522029	49523871	0	1	1842	0
chr13	49522143	49522604	CD4_Plagnol_activated.28043	0	.	49522143	49522604	0	1	461	0
chr13	49523397	49523720	CD4_Plagnol_resting.27131	0	.	49523397	49523720	0	1	323	0
chr13	49523802	49534072	REMC_MyoepithelialBreast.41985	0	.	49523802	49534072	0	1	10270	0
chr13	49523944	49524689	REMC_BreastStem.22761	0	.	49523944	49524689	0	1	745	0
chr13	49523956	49529836	REMC_LuminalBreast.44878	0	.	49523956	49529836	0	1	5880	0
chr13	49523969	49530521	B_cells_Cheung.86405	0	.	49523969	49530521	0	1	6552	0
chr13	49523979	49526470	H1_polyA+.50593	0	.	49523979	49526470	0	1	2491	0
chr13	49523979	49524688	CD4_Plagnol_activated.28046	0	.	49523979	49524688	0	1	709	0
chr13	49523988	49524559	CD4_Plagnol_resting.27132	0	.	49523988	49524559	0	1	571	0
chr13	49523997	49526128	melanoma_Garraway_short_term_cultures.29729	0	.	49523997	49526128	0	1	2131	0
chr13	49526576	49534124	H1_polyA+.50594	0	.	49526576	49534124	0	1	7548	0
chr13	49527563	49529306	CD4_Plagnol_activated.28049	0	.	49527563	49529306	0	1	1743	0
chr13	49534596	49537179	H1_polyA+.50595	0	.	49534596	49537179	0	1	2583	0
chr13	49540428	49541365	CD4_Snyder.33809	0	.	49540428	49541365	0	1	937	0
chr13	49553677	49554026	H1_rRNA-depleted_UCSD_REMC.39176	0	.	49553677	49554026	0	1	349	0
chr13	49553711	49554264	REMC_LuminalBreast.44797	0	.	49553711	49554264	0	1	553	0
chr13	50318987	50320147	prostate_carcinoma.43579	0	.	50318987	50320147	0	1	1160	0
chr13	50319077	50321131	MIP101.29973	0	.	50319077	50321131	0	1	2054	0
chr13	50328554	50330132	HepG2_Caltech_ENCODE.15727	0	.	50328554	50330132	0	1	1578	0
chr13	50331512	50332477	HepG2_Caltech_ENCODE.15728	0	.	50331512	50332477	0	1	965	0
chr13	50338237	50338559	B_Cells_Pritchard.1477939	0	.	50338237	50338559	0	1	322	0
chr13	50338925	50340135	HepG2_Caltech_ENCODE.15733	0	.	50338925	50340135	0	1	1210	0
chr13	50348682	50351621	HepG2_Caltech_ENCODE.15737	0	.	50348682	50351621	0	1	2939	0
chr13	50352017	50355072	H1_polyA+.50703	0	.	50352017	50355072	0	1	3055	0
chr13	50353570	50354789	MIP101.29976	0	.	50353570	50354789	0	1	1219	0
chr13	50353830	50360366	HepG2_Caltech_ENCODE.15739	0	.	50353830	50360366	0	1	6536	0
chr13	50353875	50354323	B_cells_Cheung.86366	0	.	50353875	50354323	0	1	448	0
chr13	50357017	50358664	H1_polyA+.50705	0	.	50357017	50358664	0	1	1647	0
chr13	50372518	50373019	B_cells_Cheung.86368	0	.	50372518	50373019	0	1	501	0
chr13	50377421	50378064	B_cells_Cheung.86369	0	.	50377421	50378064	0	1	643	0
chr13	50379927	50380406	B_Cells_Pritchard.1478099	0	.	50379927	50380406	0	1	479	0
chr13	50446383	50446969	CD4_Plagnol_resting.27174	0	.	50446383	50446969	0	1	586	0
chr13	50446630	50448073	B_Cells_Pritchard.1478271	0	.	50446630	50448073	0	1	1443	0
chr13	50447601	50448697	REMC_LuminalBreast.44823	0	.	50447601	50448697	0	1	1096	0
chr13	50448140	50449023	B_cells_Cheung.86374	0	.	50448140	50449023	0	1	883	0
chr13	50448212	50449919	B_Cells_Pritchard.1478273	0	.	50448212	50449919	0	1	1707	0
chr13	50450599	50452458	B_cells_Cheung.86377	0	.	50450599	50452458	0	1	1859	0
chr13	50450628	50452335	B_Cells_Pritchard.1478303	0	.	50450628	50452335	0	1	1707	0
chr13	50451534	50452337	CD4_Plagnol_activated.27998	0	.	50451534	50452337	0	1	803	0
chr13	50466709	50467517	MIP101.30000	0	.	50466709	50467517	0	1	808	0
chr13	50554255	50585357	H9_polyA+.19886	0	-	50554255	50585357	0	4	2207,241,148,117	0,3200,5809,30985
chr13	50554381	50605491	H1_polyA+.51690	0	-	50554381	50605491	0	5	2081,241,148,119,168	0,3074,5683,30859,50942
chr13	50557485	50560213	NEC_from_H9.32964	0	-	50557485	50560213	0	2	211,149	0,2579
chr13	50557515	50585345	H1_rRNA-depleted_UCSD_REMC.39259	0	-	50557515	50585345	0	3	181,206,105	0,2491,27725
chr13	50557560	50583079	ENST00000433280	0	-	50557560	50583079	0	3	136,148,147	0,2504,25372
chr13	50560064	50584123	pHIT000112747	0	-	50560064	50584123	0	3	148,471,189	0,22868,23870
chr13	50591019	50591356	A549_Myers.34656	0	.	50591019	50591356	0	1	337	0
chr13	50641499	50642033	H9_polyA-_Chen.6289	0	.	50641499	50642033	0	1	534	0
chr13	50641634	50642071	H9_polyA+.19891	0	.	50641634	50642071	0	1	437	0
chr13	50641671	50642064	H1_polyA+.51881	0	.	50641671	50642064	0	1	393	0
chr13	50642326	50657152	H1_polyA+.51878	0	+	50642326	50657152	0	2	58,10076	0,4750
chr13	50647076	50653336	H9_polyA+.19889	0	.	50647076	50653336	0	1	6260	0
chr13	50650339	50653198	NEC_from_H9.32969	0	.	50650339	50653198	0	1	2859	0
chr13	50650597	50652235	H9_polyA-_Chen.6293	0	.	50650597	50652235	0	1	1638	0
chr13	50671537	50672442	H1_polyA+.51885	0	.	50671537	50672442	0	1	905	0
chr13	50672463	50673096	REMC_BreastStem.22806	0	.	50672463	50673096	0	1	633	0
chr13	50676782	50678617	H1_polyA+.50747	0	.	50676782	50678617	0	1	1835	0
chr13	50759358	50760661	H1_polyA+.50758	0	.	50759358	50760661	0	1	1303	0
chr13	50759759	50760668	REMC_MyoepithelialBreast.42210	0	.	50759759	50760668	0	1	909	0
chr13	50759901	50760683	REMC_LuminalBreast.44840	0	.	50759901	50760683	0	1	782	0
chr13	50762082	50765785	H1_polyA+.50760	0	.	50762082	50765785	0	1	3703	0
chr13	50762745	50765584	REMC_LuminalBreast.44842	0	.	50762745	50765584	0	1	2839	0
chr13	50762748	50765786	REMC_MyoepithelialBreast.42211	0	.	50762748	50765786	0	1	3038	0
chr13	50765978	50772571	H1_polyA+.50761	0	.	50765978	50772571	0	1	6593	0
chr13	50766087	50770999	REMC_MyoepithelialBreast.42212	0	.	50766087	50770999	0	1	4912	0
chr13	50766879	50769765	REMC_BreastStem.23024	0	.	50766879	50769765	0	1	2886	0
chr13	50767228	50778557	REMC_LuminalBreast.44844	0	.	50767228	50778557	0	1	11329	0
chr13	50770530	50771848	REMC_BreastStem.23025	0	.	50770530	50771848	0	1	1318	0
chr13	50771139	50775333	REMC_MyoepithelialBreast.42206	0	.	50771139	50775333	0	1	4194	0
chr13	50771965	50772785	REMC_BreastStem.23026	0	.	50771965	50772785	0	1	820	0
chr13	50775914	50778526	REMC_MyoepithelialBreast.42213	0	.	50775914	50778526	0	1	2612	0
chr13	50776678	50778339	REMC_BreastStem.23028	0	.	50776678	50778339	0	1	1661	0
chr13	50784864	50786766	REMC_LuminalBreast.44848	0	.	50784864	50786766	0	1	1902	0
chr13	50785065	50786221	REMC_MyoepithelialBreast.42218	0	.	50785065	50786221	0	1	1156	0
chr13	50785104	50786250	H1_polyA+.50767	0	.	50785104	50786250	0	1	1146	0
chr13	50785473	50786559	REMC_BreastStem.23031	0	.	50785473	50786559	0	1	1086	0
chr13	50786870	50788727	H1_polyA+.50768	0	.	50786870	50788727	0	1	1857	0
chr13	50786881	50787422	REMC_MyoepithelialBreast.42220	0	.	50786881	50787422	0	1	541	0
chr13	50786889	50787574	B_Cells_Pritchard.1479271	0	.	50786889	50787574	0	1	685	0
chr13	50786892	50795066	REMC_LuminalBreast.44849	0	.	50786892	50795066	0	1	8174	0
chr13	50786902	50787434	REMC_BreastStem.23032	0	.	50786902	50787434	0	1	532	0
chr13	50787489	50790083	REMC_MyoepithelialBreast.42221	0	.	50787489	50790083	0	1	2594	0
chr13	50787963	50789989	REMC_BreastStem.23033	0	.	50787963	50789989	0	1	2026	0
chr13	50788878	50793511	H1_polyA+.50769	0	.	50788878	50793511	0	1	4633	0
chr13	50790223	50796028	REMC_MyoepithelialBreast.42207	0	.	50790223	50796028	0	1	5805	0
chr13	50790223	50796028	REMC_MyoepithelialBreast.42208	0	-	50790223	50796028	0	2	1647,4015	0,1790
chr13	50791585	50792849	REMC_BreastStem.23012	0	.	50791585	50792849	0	1	1264	0
chr13	50797025	50806902	REMC_LuminalBreast.44851	0	.	50797025	50806902	0	1	9877	0
chr13	50801816	50804243	REMC_BreastStem.23038	0	.	50801816	50804243	0	1	2427	0
chr13	50927215	50928317	BT474_Burge_Thompson.14486	0	.	50927215	50928317	0	1	1102	0
chr13	50927324	50928321	CD4_Plagnol_resting.27231	0	.	50927324	50928321	0	1	997	0
chr13	50927690	50928235	HeLa_polyA+_Chen.15920	0	.	50927690	50928235	0	1	545	0
chr13	50927943	50929113	REMC_LuminalBreast.44888	0	.	50927943	50929113	0	1	1170	0
chr13	50933813	50935357	BT474_Burge_Thompson.14484	0	.	50933813	50935357	0	1	1544	0
chr13	50934124	50934547	brain_AmbionMAQC.19287	0	.	50934124	50934547	0	1	423	0
chr13	50943971	50944655	B_cells_Cheung.86452	0	.	50943971	50944655	0	1	684	0
chr13	51235908	51238936	CD4_Plagnol_activated.28103	0	.	51235908	51238936	0	1	3028	0
chr13	51235931	51239103	A549_Myers.34696	0	.	51235931	51239103	0	1	3172	0
chr13	51235970	51238897	MDAMB231_Thompson.9839	0	.	51235970	51238897	0	1	2927	0
chr13	51235976	51238929	HIT000020213	0	+	51235976	51238929	0	1	2953	0
chr13	51236125	51238979	CD4_Snyder.33996	0	.	51236125	51238979	0	1	2854	0
chr13	51236196	51239032	liver_polyA+.60128	0	.	51236196	51239032	0	1	2836	0
chr13	51236434	51237130	MeWo_Garraway.15819	0	.	51236434	51237130	0	1	696	0
chr13	51237011	51237376	breast_Burge.17502	0	.	51237011	51237376	0	1	365	0
chr13	51237240	51238917	MeWo_Garraway.15820	0	.	51237240	51238917	0	1	1677	0
chr13	51237298	51237833	H9_polyA-_Chen.6312	0	.	51237298	51237833	0	1	535	0
chr13	51282661	51284960	REMC_LuminalBreast.45143	0	.	51282661	51284960	0	1	2299	0
chr13	51282725	51284144	melanoma_Garraway_short_term_cultures.29826	0	.	51282725	51284144	0	1	1419	0
chr13	51282728	51285198	HepG2_Caltech_ENCODE.15924	0	.	51282728	51285198	0	1	2470	0
chr13	51282736	51285055	CD4_Plagnol_activated.28113	0	.	51282736	51285055	0	1	2319	0
chr13	51283023	51286112	H1_polyA+.50852	0	.	51283023	51286112	0	1	3089	0
chr13	51283131	51286336	prostate_carcinoma.43676	0	.	51283131	51286336	0	1	3205	0
chr13	51391078	51400977	H1_polyA+.50861	0	.	51391078	51400977	0	1	9899	0
chr13	51391135	51394520	prostate_carcinoma.43762	0	.	51391135	51394520	0	1	3385	0
chr13	51391533	51396044	HepG2_Caltech_ENCODE.15839	0	.	51391533	51396044	0	1	4511	0
chr13	51392288	51393363	BT474_Burge_Thompson.14495	0	.	51392288	51393363	0	1	1075	0
chr13	51393567	51394107	H9_polyA+.19948	0	.	51393567	51394107	0	1	540	0
chr13	51394408	51395811	MIP101.30057	0	.	51394408	51395811	0	1	1403	0
chr13	51394706	51398472	prostate_carcinoma.43763	0	.	51394706	51398472	0	1	3766	0
chr13	51396496	51399349	HepG2_Caltech_ENCODE.15834	0	.	51396496	51399349	0	1	2853	0
chr13	51397989	51398320	BT474_Burge_Thompson.14496	0	.	51397989	51398320	0	1	331	0
chr13	51633050	51634880	HepG2_Caltech_ENCODE.15862	0	.	51633050	51634880	0	1	1830	0
chr13	51635210	51636375	HepG2_Caltech_ENCODE.15863	0	.	51635210	51636375	0	1	1165	0
chr13	51881705	51882239	MIP101.30248	0	.	51881705	51882239	0	1	534	0
chr13	51923995	51924886	prostate_carcinoma.43787	0	.	51923995	51924886	0	1	891	0
chr13	52547550	52553736	pHIT000023252	0	-	52547550	52553736	0	3	115,149,222	0,1133,5964
chr13	52547550	52553822	pHIT000112779	0	-	52547550	52553822	0	3	115,149,189	0,1133,6083
chr13	52552998	52554307	prostate_carcinoma.43806	0	.	52552998	52554307	0	1	1309	0
chr13	52584088	52585152	REMC_LuminalBreast.45070	0	.	52584088	52585152	0	1	1064	0
chr13	52635749	52636365	MeI_Garraway.7900	0	.	52635749	52636365	0	1	616	0
chr13	52904030	52904811	prostate_carcinoma.43819	0	.	52904030	52904811	0	1	781	0
chr13	52925311	52945809	pHIT000112780	0	-	52925311	52945809	0	2	162,147	0,20351
chr13	53555836	53556847	H1_polyA+.50929	0	.	53555836	53556847	0	1	1011	0
chr13	53562856	53566215	H1_polyA+.50932	0	.	53562856	53566215	0	1	3359	0
chr13	53584574	53594543	H1_polyA+.50934	0	.	53584574	53594543	0	1	9969	0
chr13	53584827	53605040	H9_polyA+.20019	0	-	53584827	53605040	0	3	3518,150,292	0,14588,19921
chr13	53584827	53592132	H9_polyA+.20018	0	.	53584827	53592132	0	1	7305	0
chr13	53587776	53588352	H1_rRNA-depleted_UCSD_REMC.39711	0	.	53587776	53588352	0	1	576	0
chr13	53587943	53588344	NEC_from_H9.33159	0	.	53587943	53588344	0	1	401	0
chr13	53588015	53588359	H9_polyA-_Chen.6322	0	.	53588015	53588359	0	1	344	0
chr13	53596419	53604998	HIT000090317	0	-	53596419	53604998	0	4	472,150,198,250	0,2996,6590,8329
chr13	53596432	53605002	HIT000089527	0	-	53596432	53605002	0	4	459,150,198,254	0,2983,6577,8316
chr13	53598970	53605002	HIT000089479	0	-	53598970	53605002	0	3	595,198,254	0,4039,5778
chr13	53598997	53605002	ENST00000451744	0	-	53598997	53605002	0	3	568,198,254	0,4012,5751
chr13	53710407	53715030	H1_polyA+.50940	0	.	53710407	53715030	0	1	4623	0
chr13	53717005	53719635	H1_polyA+.50942	0	.	53717005	53719635	0	1	2630	0
chr13	53725212	53725825	H1_polyA+.50946	0	.	53725212	53725825	0	1	613	0
chr13	53756869	53757379	H1_polyA+.50959	0	.	53756869	53757379	0	1	510	0
chr13	53757550	53759957	H1_polyA+.50960	0	.	53757550	53759957	0	1	2407	0
chr13	53770337	53783190	H1_polyA+.50965	0	.	53770337	53783190	0	1	12853	0
chr13	53785073	53785454	H9_polyA+.20028	0	.	53785073	53785454	0	1	381	0
chr13	53787196	53787518	H1_polyA+.50967	0	.	53787196	53787518	0	1	322	0
chr13	53789344	53789796	H1_rRNA-depleted_UCSD_REMC.39543	0	.	53789344	53789796	0	1	452	0
chr13	53789427	53796563	H1_polyA+.50970	0	.	53789427	53796563	0	1	7136	0
chr13	53789895	53790287	H9_polyA+.20029	0	.	53789895	53790287	0	1	392	0
chr13	53793167	53793814	H1_rRNA-depleted_UCSD_REMC.39549	0	.	53793167	53793814	0	1	647	0
chr13	53824322	53835467	H1_polyA+.50975	0	-	53824322	53835467	0	2	1307,199	0,10946
chr13	53824322	53826630	H1_polyA+.50974	0	.	53824322	53826630	0	1	2308	0
chr13	53879628	53886773	H1_polyA+.50986	0	.	53879628	53886773	0	1	7145	0
chr13	53879628	53886773	H1_polyA+.50987	0	-	53879628	53886773	0	2	1036,5758	0,1387
chr13	53883587	53884082	H1_rRNA-depleted_UCSD_REMC.39581	0	.	53883587	53884082	0	1	495	0
chr13	54058971	54062557	khalil_622	0	.	54058971	54062557	0	4	358,333,181,723	0,409,2244,2863
chr13	54064365	54065994	H1_polyA+.50995	0	.	54064365	54065994	0	1	1629	0
chr13	54066966	54070245	H1_polyA+.50996	0	.	54066966	54070245	0	1	3279	0
chr13	54124083	54125067	H1_polyA+.51002	0	.	54124083	54125067	0	1	984	0
chr13	54249681	54253050	H1_polyA+.51003	0	.	54249681	54253050	0	1	3369	0
chr13	54250436	54251323	MCF7_Burge_Thompson.13259	0	.	54250436	54251323	0	1	887	0
chr13	54430467	54430826	B_Cells_Pritchard.1485857	0	.	54430467	54430826	0	1	359	0
chr13	54527916	54528694	H9_polyA+.20052	0	.	54527916	54528694	0	1	778	0
chr13	54529594	54530295	H9_polyA+.20053	0	.	54529594	54530295	0	1	701	0
chr13	54531891	54546619	H1_polyA+.51097	0	+	54531891	54546619	0	2	3247,1133	0,13595
chr13	54533685	54535611	H9_polyA+.20062	0	.	54533685	54535611	0	1	1926	0
chr13	54535843	54552909	H1_polyA+.51096	0	.	54535843	54552909	0	1	17066	0
chr13	54553684	54554978	H1_polyA+.51098	0	.	54553684	54554978	0	1	1294	0
chr13	54555569	54555902	H1_polyA+.51099	0	.	54555569	54555902	0	1	333	0
chr13	54582994	54588275	H1_polyA+.51110	0	.	54582994	54588275	0	1	5281	0
chr13	54612783	54615405	H1_polyA+.51119	0	.	54612783	54615405	0	1	2622	0
chr13	54615551	54617825	H1_polyA+.51120	0	.	54615551	54617825	0	1	2274	0
chr13	54620469	54620866	H1_rRNA-depleted_UCSD_REMC.39621	0	.	54620469	54620866	0	1	397	0
chr13	54622332	54624670	H1_polyA+.51124	0	.	54622332	54624670	0	1	2338	0
chr13	54627056	54632337	H1_polyA+.51126	0	.	54627056	54632337	0	1	5281	0
chr13	54641245	54641566	H9_polyA+.20090	0	.	54641245	54641566	0	1	321	0
chr13	54645046	54649121	H1_polyA+.51127	0	.	54645046	54649121	0	1	4075	0
chr13	54650892	54684388	H1_polyA+.51129	0	.	54650892	54684388	0	1	33496	0
chr13	54671447	54672856	H9_polyA+.20108	0	.	54671447	54672856	0	1	1409	0
chr13	54672161	54672691	H9_polyA-_Chen.6325	0	.	54672161	54672691	0	1	530	0
chr13	54672479	54672856	NEC_from_H9.33221	0	.	54672479	54672856	0	1	377	0
chr13	54686066	54698153	H1_polyA+.51043	0	.	54686066	54698153	0	1	12087	0
chr13	54690515	54691114	H9_polyA+.20122	0	.	54690515	54691114	0	1	599	0
chr13	54698281	54713474	H1_polyA+.51044	0	.	54698281	54713474	0	1	15193	0
chr13	54704204	54705044	melanoma_Garraway_short_term_cultures.29899	0	.	54704204	54705044	0	1	840	0
chr13	54709556	54710274	H9_polyA+.20136	0	.	54709556	54710274	0	1	718	0
chr13	54723115	54738181	H1_polyA+.51046	0	.	54723115	54738181	0	1	15066	0
chr13	54753807	54758343	H1_polyA+.51052	0	.	54753807	54758343	0	1	4536	0
chr13	54756597	54756983	H1_rRNA-depleted_UCSD_REMC.39647	0	.	54756597	54756983	0	1	386	0
chr13	54764141	54775136	H1_polyA+.51057	0	.	54764141	54775136	0	1	10995	0
chr13	54766283	54766932	H9_polyA-_Chen.6326	0	.	54766283	54766932	0	1	649	0
chr13	54775308	54790342	H1_polyA+.51058	0	.	54775308	54790342	0	1	15034	0
chr13	54793427	54795964	H1_polyA+.51062	0	.	54793427	54795964	0	1	2537	0
chr13	54807290	54810342	H1_polyA+.51065	0	.	54807290	54810342	0	1	3052	0
chr13	54855000	54856399	H1_polyA+.51078	0	.	54855000	54856399	0	1	1399	0
chr13	54868367	54874576	H1_polyA+.51083	0	.	54868367	54874576	0	1	6209	0
chr13	54882121	54883147	H1_polyA+.51086	0	.	54882121	54883147	0	1	1026	0
chr13	54882376	54883001	H9_polyA+.20203	0	.	54882376	54883001	0	1	625	0
chr13	55025651	55029572	H9_polyA+.20219	0	-	55025651	55029572	0	2	1303,63	0,3858
chr13	55025809	55026124	NEC_from_H9.33233	0	.	55025809	55026124	0	1	315	0
chr13	55028424	55028919	H1_rRNA-depleted_UCSD_REMC.39667	0	.	55028424	55028919	0	1	495	0
chr13	55036444	55036832	H1_rRNA-depleted_UCSD_REMC.39668	0	.	55036444	55036832	0	1	388	0
chr13	55038476	55038784	NEC_from_H9.33236	0	.	55038476	55038784	0	1	308	0
chr13	55054918	55055221	H1_rRNA-depleted_UCSD_REMC.39680	0	.	55054918	55055221	0	1	303	0
chr13	55055285	55055719	H9_polyA-_Chen.6337	0	.	55055285	55055719	0	1	434	0
chr13	55058226	55062629	HeLa_polyA+_Chen.15977	0	.	55058226	55062629	0	1	4403	0
chr13	55059394	55060735	HeLa_polyA-_Chen.8333	0	.	55059394	55060735	0	1	1341	0
chr13	55076903	55081988	H1_polyA+.51134	0	.	55076903	55081988	0	1	5085	0
chr13	55078422	55079007	HeLa_polyA+_Chen.15982	0	.	55078422	55079007	0	1	585	0
chr13	55096792	55097678	H1_polyA+.51139	0	.	55096792	55097678	0	1	886	0
chr13	55163267	55175180	H1_polyA+.51150	0	.	55163267	55175180	0	1	11913	0
chr13	55175304	55176296	H1_polyA+.51151	0	.	55175304	55176296	0	1	992	0
chr13	55176673	55183431	H1_polyA+.51152	0	.	55176673	55183431	0	1	6758	0
chr13	55216802	55217944	H1_polyA+.51164	0	.	55216802	55217944	0	1	1142	0
chr13	55287310	55287990	H1_polyA+.51176	0	.	55287310	55287990	0	1	680	0
chr13	55435567	55436073	B_Cells_Pritchard.1487515	0	.	55435567	55436073	0	1	506	0
chr13	55946613	55947273	H1_polyA+.51200	0	.	55946613	55947273	0	1	660	0
chr13	55952715	55954631	H1_polyA+.51201	0	.	55952715	55954631	0	1	1916	0
chr13	55954705	55958886	H1_polyA+.51202	0	.	55954705	55958886	0	1	4181	0
chr13	56056764	56058614	H1_polyA+.51206	0	.	56056764	56058614	0	1	1850	0
chr13	56072045	56072979	H1_polyA+.51210	0	.	56072045	56072979	0	1	934	0
chr13	57616518	57617071	B_cells_Cheung.86733	0	.	57616518	57617071	0	1	553	0
chr13	58097599	58098113	B_Cells_Pritchard.1491349	0	.	58097599	58098113	0	1	514	0
chr13	58914025	58914557	BT474_Burge_Thompson.14555	0	.	58914025	58914557	0	1	532	0
chr13	59740259	59742332	H1_polyA+.51242	0	.	59740259	59742332	0	1	2073	0
chr13	59740846	59741866	B_Cells_Pritchard.1494891	0	.	59740846	59741866	0	1	1020	0
chr13	59741216	59741906	B_cells_Cheung.86762	0	.	59741216	59741906	0	1	690	0
chr13	59741324	59741734	MIP101.30186	0	.	59741324	59741734	0	1	410	0
chr13	59744270	59744622	B_Cells_Pritchard.1494897	0	.	59744270	59744622	0	1	352	0
chr13	60389176	60390140	ENST00000414201	0	+	60389176	60390140	0	2	197,206	0,758
chr13	61476266	61497615	Rinn_00022036	0	-	61476266	61497615	0	2	378,99	0,21250
chr13	63303810	63305127	XR_078795	0	-	63303810	63305127	0	1	1317	0
chr13	63315845	63316259	HIT000336791	0	-	63315845	63316259	0	1	414	0
chr13	63319709	63321503	BT474_Burge_Thompson.14568	0	.	63319709	63321503	0	1	1794	0
chr13	63406826	63407954	HepG2_Caltech_ENCODE.15940	0	.	63406826	63407954	0	1	1128	0
chr13	63440679	63441666	K562.20130	0	.	63440679	63441666	0	1	987	0
chr13	63445307	63446441	K562.20132	0	.	63445307	63446441	0	1	1134	0
chr13	63453243	63453992	HepG2_Caltech_ENCODE.15948	0	.	63453243	63453992	0	1	749	0
chr13	63462231	63506671	HIT000389690	0	-	63462231	63506671	0	4	103,25,118,191	0,12287,13250,44249
chr13	63462232	63506671	HIT000389689	0	-	63462232	63506671	0	4	102,25,121,191	0,12286,13249,44248
chr13	63473163	63473549	B_cells_Cheung.86816	0	.	63473163	63473549	0	1	386	0
chr13	63540616	63542130	BT474_Burge_Thompson.14597	0	.	63540616	63542130	0	1	1514	0
chr13	63547296	63548464	B_cells_Cheung.86820	0	.	63547296	63548464	0	1	1168	0
chr13	63547311	63548043	melanoma_Garraway_short_term_cultures.29928	0	.	63547311	63548043	0	1	732	0
chr13	63547399	63547906	HeLa_polyA+_Chen.15991	0	.	63547399	63547906	0	1	507	0
chr13	63547402	63547994	MDAMB231_Thompson.9886	0	.	63547402	63547994	0	1	592	0
chr13	63547426	63547986	HeLa_polyA-_Chen.8349	0	.	63547426	63547986	0	1	560	0
chr13	63549604	63549954	BT474_Burge_Thompson.14582	0	.	63549604	63549954	0	1	350	0
chr13	63550084	63551323	HepG2_Caltech_ENCODE.15933	0	.	63550084	63551323	0	1	1239	0
chr13	63550280	63550852	B_cells_Cheung.86821	0	.	63550280	63550852	0	1	572	0
chr13	63550469	63551152	BT474_Burge_Thompson.14583	0	.	63550469	63551152	0	1	683	0
chr13	63644399	63645525	K562.20158	0	.	63644399	63645525	0	1	1126	0
chr13	64349306	64349710	melanoma_Garraway_short_term_cultures.29931	0	.	64349306	64349710	0	1	404	0
chr13	64352168	64352548	melanoma_Garraway_short_term_cultures.29932	0	.	64352168	64352548	0	1	380	0
chr13	65413194	65449944	Rinn_00021814	0	+	65413194	65449944	0	2	141,5349	0,31401
chr13	66702755	66704187	HIT000304203	0	+	66702755	66704187	0	1	1432	0
chr13	66844519	66852109	ENST00000415120	0	+	66844519	66852109	0	3	84,101,426	0,2478,7164
chr13	68044203	68047168	MCF7_Burge_Thompson.13277	0	.	68044203	68047168	0	1	2965	0
chr13	68333404	68357458	HIT000097316	0	-	68333404	68357458	0	3	3145,156,149	0,8787,23905
chr13	68333418	68357458	Rinn_00021516	0	-	68333418	68357458	0	3	3131,153,150	0,8776,23890
chr13	68840582	68841218	K562.20226	0	.	68840582	68841218	0	1	636	0
chr13	68886473	68893591	K562.20209	0	.	68886473	68893591	0	1	7118	0
chr13	72557021	72560097	REMC_LuminalBreast.45198	0	.	72557021	72560097	0	1	3076	0
chr13	72558476	72560017	REMC_MyoepithelialBreast.42286	0	.	72558476	72560017	0	1	1541	0
chr13	72560389	72565379	REMC_LuminalBreast.45199	0	.	72560389	72565379	0	1	4990	0
chr13	72562171	72563165	REMC_MyoepithelialBreast.42289	0	.	72562171	72563165	0	1	994	0
chr13	72567813	72570663	REMC_MyoepithelialBreast.42291	0	.	72567813	72570663	0	1	2850	0
chr13	72567824	72570123	REMC_LuminalBreast.45201	0	.	72567824	72570123	0	1	2299	0
chr13	72993590	73015319	pHIT000112803	0	-	72993590	73015319	0	2	193,185	0,21544
chr13	73018525	73120391	ENST00000452852	0	-	73018525	73120391	0	2	454,31	0,101835
chr13	73083108	73109052	MDAMB468_Thompson.10897	0	+	73083108	73109052	0	5	241,131,1817,403,5388	0,5081,6093,14474,20556
chr13	73089132	73090471	REMC_LuminalBreast.45211	0	.	73089132	73090471	0	1	1339	0
chr13	73089197	73090093	prostate_carcinoma.43996	0	.	73089197	73090093	0	1	896	0
chr13	73105093	73106765	REMC_LuminalBreast.45212	0	.	73105093	73106765	0	1	1672	0
chr13	73144446	73149755	khalil_638	0	.	73144446	73149755	0	2	42,470	0,4839
chr13	73607197	73607655	A549_Myers.34925	0	.	73607197	73607655	0	1	458	0
chr13	73607244	73608028	B_cells_Cheung.87216	0	.	73607244	73608028	0	1	784	0
chr13	73607967	73609697	REMC_MyoepithelialBreast.42301	0	.	73607967	73609697	0	1	1730	0
chr13	73608118	73609402	B_cells_Cheung.87217	0	.	73608118	73609402	0	1	1284	0
chr13	73626567	73627597	liver_polyA+.60595	0	.	73626567	73627597	0	1	1030	0
chr13	73626822	73627577	kidney_Gilad.39319	0	.	73626822	73627577	0	1	755	0
chr13	73703594	73732114	ENST00000419499	0	+	73703594	73732114	0	2	296,3044	0,25476
chr13	73703594	73732114	HIT000013303	0	-	73703594	73732114	0	2	296,3044	0,25476
chr13	73729069	73732652	CD4_Plagnol_resting.27465	0	.	73729069	73732652	0	1	3583	0
chr13	73729069	73732394	CD4_Snyder.34463	0	.	73729069	73732394	0	1	3325	0
chr13	73729070	73732652	CD4_Plagnol_activated.28290	0	.	73729070	73732652	0	1	3582	0
chr13	73729087	73730621	H1_polyA+.51383	0	.	73729087	73730621	0	1	1534	0
chr13	73729088	73730634	prostate_carcinoma.44010	0	.	73729088	73730634	0	1	1546	0
chr13	73729274	73730000	liver_polyA+.60606	0	.	73729274	73730000	0	1	726	0
chr13	73730744	73732078	prostate_carcinoma.44009	0	.	73730744	73732078	0	1	1334	0
chr13	73730749	73732005	H1_polyA+.51384	0	.	73730749	73732005	0	1	1256	0
chr13	73731064	73731378	liver_polyA+.60607	0	.	73731064	73731378	0	1	314	0
chr13	73837164	73839990	CD4_Plagnol_activated.28296	0	.	73837164	73839990	0	1	2826	0
chr13	73837362	73839659	CD4_Plagnol_resting.27468	0	.	73837362	73839659	0	1	2297	0
chr13	73837382	73838561	CD4_Snyder.34492	0	.	73837382	73838561	0	1	1179	0
chr13	73878355	73880226	CD4_Snyder.34502	0	.	73878355	73880226	0	1	1871	0
chr13	73878459	73880764	CD4_Plagnol_activated.28297	0	.	73878459	73880764	0	1	2305	0
chr13	73878469	73879532	CD4_Plagnol_resting.27469	0	.	73878469	73879532	0	1	1063	0
chr13	73878475	73879037	prostate_carcinoma.44012	0	.	73878475	73879037	0	1	562	0
chr13	73878539	73880940	HIT000020137	0	-	73878539	73880940	0	1	2401	0
chr13	75334574	75335081	B_cells_Cheung.87446	0	.	75334574	75335081	0	1	507	0
chr13	75404516	75407269	HIT000093628	0	-	75404516	75407269	0	1	2753	0
chr13	76300455	76301570	REMC_MyoepithelialBreast.42393	0	.	76300455	76301570	0	1	1115	0
chr13	76308516	76309559	prostate_carcinoma.44057	0	.	76308516	76309559	0	1	1043	0
chr13	76314454	76315162	REMC_BreastStem.22989	0	.	76314454	76315162	0	1	708	0
chr13	76314592	76315299	REMC_MyoepithelialBreast.42395	0	.	76314592	76315299	0	1	707	0
chr13	76327588	76329400	REMC_MyoepithelialBreast.42402	0	.	76327588	76329400	0	1	1812	0
chr13	76331988	76333713	REMC_MyoepithelialBreast.42405	0	.	76331988	76333713	0	1	1725	0
chr13	76332453	76333914	REMC_BreastStem.22992	0	.	76332453	76333914	0	1	1461	0
chr13	76342795	76344782	REMC_MyoepithelialBreast.42411	0	.	76342795	76344782	0	1	1987	0
chr13	76344897	76346708	REMC_MyoepithelialBreast.42412	0	.	76344897	76346708	0	1	1811	0
chr13	76360481	76362517	MCF10A_Thompson.9659	0	.	76360481	76362517	0	1	2036	0
chr13	76361416	76363216	brain_AmbionMAQC.19479	0	.	76361416	76363216	0	1	1800	0
chr13	76362616	76363211	B_Cells_Pritchard.1523161	0	.	76362616	76363211	0	1	595	0
chr13	76362621	76363264	prostate_carcinoma.44062	0	.	76362621	76363264	0	1	643	0
chr13	76362647	76363290	B_cells_Cheung.87460	0	.	76362647	76363290	0	1	643	0
chr13	76443217	76443952	REMC_MyoepithelialBreast.42426	0	.	76443217	76443952	0	1	735	0
chr13	76452236	76452563	A549_Myers.34963	0	.	76452236	76452563	0	1	327	0
chr13	76500732	76502374	REMC_LuminalBreast.45258	0	.	76500732	76502374	0	1	1642	0
chr13	76502502	76503288	CD4_Plagnol_resting.27506	0	.	76502502	76503288	0	1	786	0
chr13	76510804	76513003	REMC_LuminalBreast.45263	0	.	76510804	76513003	0	1	2199	0
chr13	76511555	76513524	B_Cells_Pritchard.1523395	0	.	76511555	76513524	0	1	1969	0
chr13	76511869	76512825	melanoma_Garraway_short_term_cultures.30047	0	.	76511869	76512825	0	1	956	0
chr13	76801128	76802078	B_cells_Cheung.87601	0	.	76801128	76802078	0	1	950	0
chr13	76801481	76801992	B_Cells_Pritchard.1523559	0	.	76801481	76801992	0	1	511	0
chr13	76928326	76928639	B_cells_Cheung.87630	0	.	76928326	76928639	0	1	313	0
chr13	77240040	77242889	B_cells_Cheung.87672	0	.	77240040	77242889	0	1	2849	0
chr13	77240306	77242621	brain_AmbionMAQC.19495	0	.	77240306	77242621	0	1	2315	0
chr13	77241049	77241429	CD4_Snyder.34761	0	.	77241049	77241429	0	1	380	0
chr13	77241138	77241503	CD4_Plagnol_resting.27522	0	.	77241138	77241503	0	1	365	0
chr13	77241148	77241822	H1_rRNA-depleted_UCSD_REMC.40074	0	.	77241148	77241822	0	1	674	0
chr13	77242136	77243079	MIP101.30411	0	.	77242136	77243079	0	1	943	0
chr13	77362077	77366390	REMC_BreastStem.23177	0	.	77362077	77366390	0	1	4313	0
chr13	77362103	77363176	REMC_MyoepithelialBreast.42534	0	.	77362103	77363176	0	1	1073	0
chr13	78068287	78068905	pHIT000023288	0	-	78068287	78068905	0	1	618	0
chr13	78068344	78069063	testes_Burge.23192	0	.	78068344	78069063	0	1	719	0
chr13	78432813	78451360	pHIT000112826	0	-	78432813	78451360	0	4	79,265,116,50	0,259,16160,18497
chr13	78883499	78895774	B_Cells_Pritchard.1527461	0	+	78883499	78895774	0	6	1465,2164,82,56,603,988	0,1837,6471,9396,10623,11287
chr13	78884819	78885191	H1_rRNA-depleted_UCSD_REMC.40125	0	.	78884819	78885191	0	1	372	0
chr13	78884841	78885419	HepG2_Caltech_ENCODE.16051	0	.	78884841	78885419	0	1	578	0
chr13	78886871	78895501	prostate_carcinoma.44194	0	+	78886871	78895501	0	4	629,82,56,1379	0,3099,6024,7251
chr13	78887099	78895216	prostate_normal.25806	0	+	78887099	78895216	0	4	401,56,209,354	0,5796,7023,7763
chr13	78887201	78895125	Rinn_00021846	0	+	78887201	78895125	0	5	299,83,57,210,264	0,2768,5693,6920,7660
chr13	78887201	78895125	Rinn_00021847	0	+	78887201	78895125	0	5	299,83,57,229,264	0,2768,5693,6920,7660
chr13	78887443	78897378	Rinn_00021849	0	+	78887443	78897378	0	3	57,57,3257	0,5451,6678
chr13	78889969	78895390	Rinn_00021850	0	+	78889969	78895390	0	3	83,57,1269	0,2925,4152
chr13	78889996	78895987	HepG2_Caltech_ENCODE.16053	0	+	78889996	78895987	0	3	56,56,1865	0,2899,4126
chr13	78893563	78895501	prostate_carcinoma.44193	0	.	78893563	78895501	0	1	1938	0
chr13	78893859	78895055	melanoma_Garraway_short_term_cultures.30083	0	.	78893859	78895055	0	1	1196	0
chr13	78893906	78895196	MDAMB468_Thompson.10949	0	.	78893906	78895196	0	1	1290	0
chr13	78894031	78895045	CD4_Plagnol_resting.27542	0	.	78894031	78895045	0	1	1014	0
chr13	78894126	78895077	K562.20308	0	.	78894126	78895077	0	1	951	0
chr13	78894135	78895058	T47D_Burge_Thompson.12703	0	.	78894135	78895058	0	1	923	0
chr13	78894143	78895097	REMC_BreastStem.23104	0	.	78894143	78895097	0	1	954	0
chr13	78894820	78895137	CD4_Plagnol_activated.28386	0	.	78894820	78895137	0	1	317	0
chr13	79060963	79063138	REMC_MyoepithelialBreast.42573	0	.	79060963	79063138	0	1	2175	0
chr13	79064719	79066064	REMC_MyoepithelialBreast.42575	0	.	79064719	79066064	0	1	1345	0
chr13	79519069	79525794	HIT000057741	0	+	79519069	79525794	0	1	6725	0
chr13	79541923	79542667	liver_polyA+.60841	0	.	79541923	79542667	0	1	744	0
chr13	79545491	79546863	liver_polyA+.60846	0	-	79545491	79546863	0	2	168,249	0,1123
chr13	79557505	79559017	REMC_MyoepithelialBreast.42590	0	.	79557505	79559017	0	1	1512	0
chr13	79560935	79563093	REMC_MyoepithelialBreast.42591	0	.	79560935	79563093	0	1	2158	0
chr13	79563215	79564156	REMC_MyoepithelialBreast.42592	0	.	79563215	79564156	0	1	941	0
chr13	79730563	79731687	REMC_MyoepithelialBreast.42610	0	.	79730563	79731687	0	1	1124	0
chr13	79755850	79756945	REMC_MyoepithelialBreast.42615	0	.	79755850	79756945	0	1	1095	0
chr13	79757016	79757865	REMC_MyoepithelialBreast.42616	0	.	79757016	79757865	0	1	849	0
chr13	79774748	79775949	REMC_BreastStem.23151	0	.	79774748	79775949	0	1	1201	0
chr13	79774753	79775937	REMC_MyoepithelialBreast.42627	0	.	79774753	79775937	0	1	1184	0
chr13	79775112	79776318	melanoma_Garraway_short_term_cultures.30093	0	.	79775112	79776318	0	1	1206	0
chr13	79775114	79775898	prostate_carcinoma.44178	0	.	79775114	79775898	0	1	784	0
chr13	79780910	79782563	REMC_BreastStem.23153	0	.	79780910	79782563	0	1	1653	0
chr13	79781270	79782797	REMC_MyoepithelialBreast.42630	0	.	79781270	79782797	0	1	1527	0
chr13	79784234	79794150	REMC_MyoepithelialBreast.42631	0	.	79784234	79794150	0	1	9916	0
chr13	79786171	79788738	REMC_BreastStem.23154	0	.	79786171	79788738	0	1	2567	0
chr13	79786268	79787522	melanoma_Garraway_short_term_cultures.30098	0	.	79786268	79787522	0	1	1254	0
chr13	79791262	79792019	melanoma_Garraway_short_term_cultures.30102	0	.	79791262	79792019	0	1	757	0
chr13	79799551	79800315	REMC_MyoepithelialBreast.42633	0	.	79799551	79800315	0	1	764	0
chr13	79799562	79799934	melanoma_Garraway_short_term_cultures.30106	0	.	79799562	79799934	0	1	372	0
chr13	79800984	79805647	REMC_MyoepithelialBreast.42635	0	.	79800984	79805647	0	1	4663	0
chr13	79801085	79802631	melanoma_Garraway_short_term_cultures.30108	0	.	79801085	79802631	0	1	1546	0
chr13	79801578	79802580	REMC_BreastStem.23157	0	.	79801578	79802580	0	1	1002	0
chr13	79817599	79818331	B_Cells_Pritchard.1529387	0	.	79817599	79818331	0	1	732	0
chr13	80712737	80715282	K562.20295	0	.	80712737	80715282	0	1	2545	0
chr13	80871750	80872125	B_Cells_Pritchard.1531445	0	.	80871750	80872125	0	1	375	0
chr13	82342835	82343558	HeLa_polyA+_Chen.16100	0	.	82342835	82343558	0	1	723	0
chr13	82354322	82355035	HeLa_polyA-_Chen.8468	0	.	82354322	82355035	0	1	713	0
chr13	82410351	82411106	HeLa_polyA-_Chen.8473	0	.	82410351	82411106	0	1	755	0
chr13	82432804	82433297	HeLa_polyA-_Chen.8475	0	.	82432804	82433297	0	1	493	0
chr13	82445842	82446511	HeLa_polyA-_Chen.8476	0	.	82445842	82446511	0	1	669	0
chr13	82486433	82487912	K562.20354	0	.	82486433	82487912	0	1	1479	0
chr13	82487025	82487737	HeLa_polyA+_Chen.16135	0	.	82487025	82487737	0	1	712	0
chr13	82488779	82489817	K562.20356	0	.	82488779	82489817	0	1	1038	0
chr13	82563465	82574516	K562.20365	0	-	82563465	82574516	0	3	183,111,243	0,7963,10808
chr13	83332222	83332778	H1_rRNA-depleted_UCSD_REMC.40164	0	.	83332222	83332778	0	1	556	0
chr13	83464746	83466368	B_cells_Cheung.87889	0	.	83464746	83466368	0	1	1622	0
chr13	83472215	83473100	melanoma_Garraway_short_term_cultures.30123	0	.	83472215	83473100	0	1	885	0
chr13	83472337	83473154	B_cells_Cheung.87901	0	.	83472337	83473154	0	1	817	0
chr13	83639889	83640378	B_cells_Cheung.87907	0	.	83639889	83640378	0	1	489	0
chr13	83735225	83735846	B_cells_Cheung.87912	0	.	83735225	83735846	0	1	621	0
chr13	84344166	84348527	Rinn_00022071	0	-	84344166	84348527	0	2	44,320	0,4041
chr13	84433667	84434732	B_cells_Cheung.87917	0	.	84433667	84434732	0	1	1065	0
chr13	84522692	84523180	B_cells_Cheung.87925	0	.	84522692	84523180	0	1	488	0
chr13	84623041	84623487	B_cells_Cheung.87932	0	.	84623041	84623487	0	1	446	0
chr13	85325484	85325848	H9_polyA-_Chen.6383	0	.	85325484	85325848	0	1	364	0
chr13	85809442	85809748	H1_rRNA-depleted_UCSD_REMC.40172	0	.	85809442	85809748	0	1	306	0
chr13	85811784	85812770	H1_polyA+.51543	0	.	85811784	85812770	0	1	986	0
chr13	85815359	85815946	H1_polyA+.51544	0	.	85815359	85815946	0	1	587	0
chr13	85832876	85834219	H1_polyA+.51546	0	.	85832876	85834219	0	1	1343	0
chr13	85833405	85833754	H9_polyA+.20400	0	.	85833405	85833754	0	1	349	0
chr13	86193661	86194100	B_Cells_Pritchard.1539749	0	.	86193661	86194100	0	1	439	0
chr13	86214571	86215515	CD4_Plagnol_resting.27580	0	.	86214571	86215515	0	1	944	0
chr13	86214759	86215382	CD4_Plagnol_activated.28432	0	.	86214759	86215382	0	1	623	0
chr13	86214818	86215119	spleen_Raymond.94193	0	.	86214818	86215119	0	1	301	0
chr13	86424791	86425190	A549_Myers.35051	0	.	86424791	86425190	0	1	399	0
chr13	86529452	86530246	K562.20370	0	.	86529452	86530246	0	1	794	0
chr13	86769226	86792719	pHIT000112833	0	+	86769226	86792719	0	3	69,162,81	0,12334,23412
chr13	87169900	87171664	HeLa_polyA-_Chen.8521	0	.	87169900	87171664	0	1	1764	0
chr13	87170659	87171405	HeLa_polyA+_Chen.16144	0	.	87170659	87171405	0	1	746	0
chr13	87190519	87192357	melanoma_Garraway_short_term_cultures.30139	0	.	87190519	87192357	0	1	1838	0
chr13	87219349	87220006	HeLa_polyA-_Chen.8542	0	.	87219349	87220006	0	1	657	0
chr13	87240171	87241314	HeLa_polyA-_Chen.8555	0	.	87240171	87241314	0	1	1143	0
chr13	87257874	87261488	HIT000096079	0	-	87257874	87261488	0	1	3614	0
chr13	87260068	87261543	HeLa_polyA-_Chen.8566	0	.	87260068	87261543	0	1	1475	0
chr13	87260685	87261526	T47D_Burge_Thompson.12721	0	.	87260685	87261526	0	1	841	0
chr13	87260725	87261497	HeLa_polyA+_Chen.16176	0	.	87260725	87261497	0	1	772	0
chr13	87260749	87261495	MDAMB231_Thompson.9984	0	.	87260749	87261495	0	1	746	0
chr13	87260750	87261524	BT20_Thompson.9555	0	.	87260750	87261524	0	1	774	0
chr13	87260888	87261509	melanoma_Garraway_short_term_cultures.30146	0	.	87260888	87261509	0	1	621	0
chr13	87261046	87261507	A549_Myers.35061	0	.	87261046	87261507	0	1	461	0
chr13	87967519	87967881	H1_polyA+.51559	0	.	87967519	87967881	0	1	362	0
chr13	88878393	88878999	MIP101.30490	0	.	88878393	88878999	0	1	606	0
chr13	88902026	88902692	liver_polyA+.60888	0	+	88902026	88902692	0	2	125,251	0,415
chr13	88902042	88902692	kidney_Gilad.39510	0	+	88902042	88902692	0	2	109,251	0,399
chr13	88947472	88948206	liver_polyA+.60892	0	.	88947472	88948206	0	1	734	0
chr13	88970384	88971486	liver_polyA+.60901	0	.	88970384	88971486	0	1	1102	0
chr13	88970384	88971310	kidney_Gilad.39520	0	.	88970384	88971310	0	1	926	0
chr13	89014383	89015238	MIP101.30494	0	.	89014383	89015238	0	1	855	0
chr13	89027689	89028055	liver_polyA+.60921	0	.	89027689	89028055	0	1	366	0
chr13	90290689	90291189	H1_rRNA-depleted_UCSD_REMC.40183	0	.	90290689	90291189	0	1	500	0
chr13	90316892	90318020	HeLa_polyA-_Chen.8578	0	.	90316892	90318020	0	1	1128	0
chr13	90317242	90318808	HeLa_polyA+_Chen.16196	0	.	90317242	90318808	0	1	1566	0
chr13	90320047	90325040	MIP101.30512	0	.	90320047	90325040	0	1	4993	0
chr13	90797247	90797735	B_Cells_Pritchard.1546903	0	.	90797247	90797735	0	1	488	0
chr13	90797855	90800073	B_Cells_Pritchard.1546907	0	.	90797855	90800073	0	1	2218	0
chr13	90797954	90800008	CD4_Plagnol_activated.28445	0	.	90797954	90800008	0	1	2054	0
chr13	90798249	90799213	CD4_Snyder.34832	0	+	90798249	90799213	0	2	82,407	0,557
chr13	90799256	90799989	K562.20386	0	.	90799256	90799989	0	1	733	0
chr13	90817099	90820624	REMC_LuminalBreast.45373	0	.	90817099	90820624	0	1	3525	0
chr13	90846154	90847863	REMC_LuminalBreast.45381	0	.	90846154	90847863	0	1	1709	0
chr13	92666677	92674321	H1_polyA+.51620	0	+	92666677	92674321	0	2	331,3803	0,3841
chr13	92670396	92674321	H1_polyA+.51621	0	.	92670396	92674321	0	1	3925	0
chr13	92671123	92674332	HepG2_Caltech_ENCODE.16079	0	.	92671123	92674332	0	1	3209	0
chr13	93871322	93872361	melanoma_Garraway_short_term_cultures.30186	0	.	93871322	93872361	0	1	1039	0
chr13	93995085	93997180	H1_polyA+.51775	0	.	93995085	93997180	0	1	2095	0
chr13	93995157	93997147	B_Cells_Pritchard.1554099	0	.	93995157	93997147	0	1	1990	0
chr13	93995549	93997342	prostate_carcinoma.44256	0	.	93995549	93997342	0	1	1793	0
chr13	93995746	93997037	B_cells_Cheung.88577	0	.	93995746	93997037	0	1	1291	0
chr13	93997647	93999925	B_Cells_Pritchard.1554105	0	.	93997647	93999925	0	1	2278	0
chr13	93998422	94000126	prostate_carcinoma.44258	0	.	93998422	94000126	0	1	1704	0
chr13	93998813	94000054	B_cells_Cheung.88579	0	.	93998813	94000054	0	1	1241	0
chr13	93999014	94000445	H1_polyA+.51777	0	.	93999014	94000445	0	1	1431	0
chr13	93999482	93999900	CD4_Plagnol_activated.28453	0	.	93999482	93999900	0	1	418	0
chr13	94000120	94000504	A549_Myers.35090	0	.	94000120	94000504	0	1	384	0
chr13	94010685	94012956	B_cells_Cheung.88582	0	.	94010685	94012956	0	1	2271	0
chr13	94010760	94012172	B_Cells_Pritchard.1554143	0	.	94010760	94012172	0	1	1412	0
chr13	94014558	94015090	melanoma_Garraway_short_term_cultures.30215	0	.	94014558	94015090	0	1	532	0
chr13	94018287	94021055	B_cells_Cheung.88588	0	.	94018287	94021055	0	1	2768	0
chr13	94019831	94022629	melanoma_Garraway_short_term_cultures.30218	0	.	94019831	94022629	0	1	2798	0
chr13	94081202	94081765	MCF7_Burge_Thompson.13380	0	.	94081202	94081765	0	1	563	0
chr13	94081275	94081748	REMC_BreastStem.23140	0	.	94081275	94081748	0	1	473	0
chr13	94082803	94086152	A549_Myers.35107	0	+	94082803	94086152	0	2	410,68	0,3281
chr13	94116845	94117487	B_Cells_Pritchard.1554311	0	.	94116845	94117487	0	1	642	0
chr13	94150736	94152713	H9_polyA+.20439	0	.	94150736	94152713	0	1	1977	0
chr13	94151808	94152890	H1_polyA+.51785	0	.	94151808	94152890	0	1	1082	0
chr13	94151984	94153832	pHIT000112849	0	+	94151984	94153832	0	2	486,111	0,1737
chr13	94153597	94154392	H9_polyA+.20440	0	.	94153597	94154392	0	1	795	0
chr13	94153629	94154066	H1_rRNA-depleted_UCSD_REMC.40377	0	.	94153629	94154066	0	1	437	0
chr13	94153857	94154223	NEC_from_H9.33593	0	.	94153857	94154223	0	1	366	0
chr13	94155064	94156262	H9_polyA+.20444	0	.	94155064	94156262	0	1	1198	0
chr13	94155145	94156537	brain_AmbionMAQC.19579	0	.	94155145	94156537	0	1	1392	0
chr13	94155953	94157565	Rinn_00022087	0	-	94155953	94157565	0	2	263,1175	0,437
chr13	94158259	94158615	H9_polyA+.20447	0	.	94158259	94158615	0	1	356	0
chr13	94158342	94158681	H1_rRNA-depleted_UCSD_REMC.40381	0	.	94158342	94158681	0	1	339	0
chr13	94417925	94418694	A549_Myers.35114	0	.	94417925	94418694	0	1	769	0
chr13	94449858	94450471	B_cells_Cheung.88608	0	.	94449858	94450471	0	1	613	0
chr13	94449858	94450418	B_Cells_Pritchard.1555103	0	.	94449858	94450418	0	1	560	0
chr13	94451473	94455296	B_Cells_Pritchard.1555119	0	.	94451473	94455296	0	1	3823	0
chr13	94453097	94455173	prostate_carcinoma.44285	0	.	94453097	94455173	0	1	2076	0
chr13	94453386	94454312	B_cells_Cheung.88610	0	.	94453386	94454312	0	1	926	0
chr13	94466036	94467031	B_Cells_Pritchard.1555121	0	.	94466036	94467031	0	1	995	0
chr13	94466272	94467020	B_cells_Cheung.88620	0	.	94466272	94467020	0	1	748	0
chr13	94753849	94754279	K562.20553	0	.	94753849	94754279	0	1	430	0
chr13	94758378	94759204	B_cells_Cheung.88625	0	.	94758378	94759204	0	1	826	0
chr13	94810206	94811044	B_Cells_Pritchard.1555819	0	.	94810206	94811044	0	1	838	0
chr13	94840867	94841377	B_cells_Cheung.88638	0	.	94840867	94841377	0	1	510	0
chr13	94854525	94855259	Rinn_00021875	0	+	94854525	94855259	0	2	274,360	0,374
chr13	95099011	95127210	Rinn_00022088	0	-	95099011	95127210	0	2	78,1105	0,27094
chr13	95110907	95113450	REMC_MyoepithelialBreast.42850	0	.	95110907	95113450	0	1	2543	0
chr13	95111327	95120440	REMC_BreastStem.23163	0	.	95111327	95120440	0	1	9113	0
chr13	95111508	95119021	REMC_LuminalBreast.45482	0	.	95111508	95119021	0	1	7513	0
chr13	95117587	95118286	H1_polyA+.51820	0	.	95117587	95118286	0	1	699	0
chr13	95118991	95120119	B_Cells_Pritchard.1556823	0	-	95118991	95120119	0	1	1128	0
chr13	95119329	95120377	REMC_LuminalBreast.45483	0	.	95119329	95120377	0	1	1048	0
chr13	96862049	96862494	B_Cells_Pritchard.1560537	0	.	96862049	96862494	0	1	445	0
chr13	96862066	96862658	B_cells_Cheung.88964	0	.	96862066	96862658	0	1	592	0
chr13	96868976	96870220	REMC_MyoepithelialBreast.42875	0	.	96868976	96870220	0	1	1244	0
chr13	96871016	96872214	REMC_MyoepithelialBreast.42876	0	.	96871016	96872214	0	1	1198	0
chr13	96874995	96877792	H1_polyA+.51862	0	.	96874995	96877792	0	1	2797	0
chr13	96875102	96876263	HepG2_Caltech_ENCODE.16119	0	.	96875102	96876263	0	1	1161	0
chr13	96875694	96876844	B_cells_Cheung.88968	0	.	96875694	96876844	0	1	1150	0
chr13	96875843	96876869	B_Cells_Pritchard.1560593	0	.	96875843	96876869	0	1	1026	0
chr13	96875936	96877334	REMC_MyoepithelialBreast.42879	0	.	96875936	96877334	0	1	1398	0
chr13	96875939	96877493	prostate_carcinoma.44378	0	.	96875939	96877493	0	1	1554	0
chr13	96880828	96882264	prostate_normal.25910	0	.	96880828	96882264	0	1	1436	0
chr13	96882987	96883358	A549_Myers.35197	0	.	96882987	96883358	0	1	371	0
chr13	96920338	96926043	REMC_MyoepithelialBreast.42886	0	.	96920338	96926043	0	1	5705	0
chr13	96982006	96982472	MeI_Garraway.7982	0	.	96982006	96982472	0	1	466	0
chr13	96990312	97057789	pHIT000112862	0	-	96990312	97057789	0	3	80,162,130	0,7132,67347
chr13	97389220	97390137	REMC_LuminalBreast.45453	0	.	97389220	97390137	0	1	917	0
chr13	97393827	97394683	REMC_MyoepithelialBreast.42944	0	.	97393827	97394683	0	1	856	0
chr13	97499303	97503254	HepG2_Caltech_ENCODE.16162	0	.	97499303	97503254	0	1	3951	0
chr13	97503883	97504995	HepG2_Caltech_ENCODE.16163	0	.	97503883	97504995	0	1	1112	0
chr13	97507094	97507529	A549_Myers.35207	0	.	97507094	97507529	0	1	435	0
chr13	98639509	98639974	B_Cells_Pritchard.1564771	0	+	98639509	98639974	0	1	465	0
chr13	98639516	98639977	prostate_carcinoma.44565	0	.	98639516	98639977	0	1	461	0
chr13	98645327	98645670	B_cells_Cheung.89172	0	.	98645327	98645670	0	1	343	0
chr13	98839479	98840176	B_Cells_Pritchard.1565175	0	.	98839479	98840176	0	1	697	0
chr13	98840681	98841507	CD4_Plagnol_resting.27738	0	.	98840681	98841507	0	1	826	0
chr13	98843807	98845154	REMC_LuminalBreast.45690	0	.	98843807	98845154	0	1	1347	0
chr13	98844015	98845280	REMC_BreastStem.23314	0	.	98844015	98845280	0	1	1265	0
chr13	98844095	98844872	B_Cells_Pritchard.1565195	0	.	98844095	98844872	0	1	777	0
chr13	98844097	98846318	CD4_Plagnol_activated.28650	0	.	98844097	98846318	0	1	2221	0
chr13	98844742	98846310	CD4_Plagnol_resting.27742	0	.	98844742	98846310	0	1	1568	0
chr13	98847042	98849602	CD4_Plagnol_activated.28651	0	.	98847042	98849602	0	1	2560	0
chr13	98847822	98849081	REMC_MyoepithelialBreast.43059	0	.	98847822	98849081	0	1	1259	0
chr13	98848138	98848873	CD4_Plagnol_resting.27743	0	.	98848138	98848873	0	1	735	0
chr13	98859994	98860398	B_cells_Cheung.89251	0	.	98859994	98860398	0	1	404	0
chr13	98861824	98868254	CD4_Plagnol_activated.28658	0	.	98861824	98868254	0	1	6430	0
chr13	98863372	98864877	REMC_LuminalBreast.45694	0	.	98863372	98864877	0	1	1505	0
chr13	98863943	98867458	CD4_Plagnol_resting.27748	0	.	98863943	98867458	0	1	3515	0
chr13	98864925	98865691	B_cells_Cheung.89253	0	.	98864925	98865691	0	1	766	0
chr13	98864982	98865477	REMC_LuminalBreast.45695	0	.	98864982	98865477	0	1	495	0
chr13	98866494	98867436	REMC_LuminalBreast.45696	0	.	98866494	98867436	0	1	942	0
chr13	98869807	98871296	B_cells_Cheung.89255	0	.	98869807	98871296	0	1	1489	0
chr13	98870295	98885297	B_Cells_Pritchard.1565253	0	+	98870295	98885297	0	8	993,146,563,856,1610,843,945,926	0,4125,5141,9066,10023,11894,13131,14076
chr13	98871556	98872154	REMC_LuminalBreast.45697	0	.	98871556	98872154	0	1	598	0
chr13	98871561	98872562	B_Cells_Pritchard.1565257	0	+	98871561	98872562	0	2	351,592	0,409
chr13	98871568	98873823	B_cells_Cheung.89257	0	.	98871568	98873823	0	1	2255	0
chr13	98872718	98873808	B_Cells_Pritchard.1565261	0	+	98872718	98873808	0	2	756,334	0,756
chr13	98874411	98874824	B_cells_Cheung.89260	0	.	98874411	98874824	0	1	413	0
chr13	98876000	98877212	B_cells_Cheung.89261	0	.	98876000	98877212	0	1	1212	0
chr13	98883141	98886762	B_cells_Cheung.89267	0	.	98883141	98886762	0	1	3621	0
chr13	98927557	98928024	B_cells_Cheung.89272	0	.	98927557	98928024	0	1	467	0
chr13	98937799	98939814	B_cells_Cheung.89276	0	.	98937799	98939814	0	1	2015	0
chr13	98937805	98941712	B_Cells_Pritchard.1565473	0	.	98937805	98941712	0	1	3907	0
chr13	98938119	98939580	BT20_Thompson.9592	0	.	98938119	98939580	0	1	1461	0
chr13	98941729	98946993	ENST00000418417	0	-	98941729	98946993	0	4	629,2043,83,41	0,2300,4660,5223
chr13	98942512	98944550	B_cells_Cheung.89280	0	.	98942512	98944550	0	1	2038	0
chr13	98942565	98944699	BT20_Thompson.9593	0	.	98942565	98944699	0	1	2134	0
chr13	98942599	98944565	H1_polyA+.52050	0	.	98942599	98944565	0	1	1966	0
chr13	98942601	98943361	REMC_LuminalBreast.45702	0	.	98942601	98943361	0	1	760	0
chr13	98943264	98944551	MIP101.30817	0	.	98943264	98944551	0	1	1287	0
chr13	98943272	98944526	melanoma_Garraway_short_term_cultures.30349	0	.	98943272	98944526	0	1	1254	0
chr13	98943733	98944538	MDAMB231_Thompson.10035	0	.	98943733	98944538	0	1	805	0
chr13	98943811	98944548	MDAMB468_Thompson.11004	0	.	98943811	98944548	0	1	737	0
chr13	98943842	98944538	T47D_Burge_Thompson.12789	0	.	98943842	98944538	0	1	696	0
chr13	98943868	98944536	MCF7_Burge_Thompson.13422	0	.	98943868	98944536	0	1	668	0
chr13	98945003	98945409	K562.20505	0	.	98945003	98945409	0	1	406	0
chr13	98948231	98949888	prostate_carcinoma.44621	0	.	98948231	98949888	0	1	1657	0
chr13	98948524	98949871	prostate_normal.26100	0	.	98948524	98949871	0	1	1347	0
chr13	98948593	98951448	Rinn_00022098	0	-	98948593	98951448	0	2	1602,457	0,2398
chr13	98948719	98949873	HeLa_polyA+_Chen.16254	0	.	98948719	98949873	0	1	1154	0
chr13	98948973	98949882	melanoma_Garraway_short_term_cultures.30351	0	.	98948973	98949882	0	1	909	0
chr13	98948986	98949863	MeWo_Garraway.16109	0	.	98948986	98949863	0	1	877	0
chr13	98949008	98949861	ZR751_Thompson.10804	0	.	98949008	98949861	0	1	853	0
chr13	98949226	98949880	H1_rRNA-depleted_UCSD_REMC.40674	0	.	98949226	98949880	0	1	654	0
chr13	98949282	98949874	REMC_MyoepithelialBreast.43060	0	.	98949282	98949874	0	1	592	0
chr13	98949507	98949863	brain_AmbionMAQC.19647	0	.	98949507	98949863	0	1	356	0
chr13	99016344	99017198	REMC_MyoepithelialBreast.43064	0	.	99016344	99017198	0	1	854	0
chr13	99016424	99017546	B_cells_Cheung.89297	0	.	99016424	99017546	0	1	1122	0
chr13	99016458	99017194	REMC_LuminalBreast.45716	0	.	99016458	99017194	0	1	736	0
chr13	99016469	99017388	B_Cells_Pritchard.1565677	0	.	99016469	99017388	0	1	919	0
chr13	99016874	99017315	pHIT000023336	0	-	99016874	99017315	0	1	441	0
chr13	99348598	99349784	prostate_normal.26080	0	.	99348598	99349784	0	1	1186	0
chr13	99350497	99351293	brain_AmbionMAQC.19665	0	.	99350497	99351293	0	1	796	0
chr13	99350840	99351859	prostate_carcinoma.44651	0	.	99350840	99351859	0	1	1019	0
chr13	99351146	99351461	A549_Myers.35297	0	.	99351146	99351461	0	1	315	0
chr13	99372350	99373926	H1_polyA+.52152	0	.	99372350	99373926	0	1	1576	0
chr13	99373034	99373698	brain_AmbionMAQC.19669	0	.	99373034	99373698	0	1	664	0
chr13	99375245	99377669	H1_polyA+.52154	0	.	99375245	99377669	0	1	2424	0
chr13	99383744	99384821	H1_polyA+.52159	0	.	99383744	99384821	0	1	1077	0
chr13	99390555	99392635	H1_polyA+.52163	0	.	99390555	99392635	0	1	2080	0
chr13	99394072	99395546	H1_polyA+.52165	0	.	99394072	99395546	0	1	1474	0
chr13	99396966	99398645	H1_polyA+.52167	0	.	99396966	99398645	0	1	1679	0
chr13	99397401	99397887	brain_AmbionMAQC.19671	0	.	99397401	99397887	0	1	486	0
chr13	99399590	99401156	H1_polyA+.52169	0	.	99399590	99401156	0	1	1566	0
chr13	99425092	99425637	H9_polyA+.20582	0	.	99425092	99425637	0	1	545	0
chr13	99425565	99426320	brain_AmbionMAQC.19680	0	.	99425565	99426320	0	1	755	0
chr13	99428964	99430939	brain_AmbionMAQC.19683	0	.	99428964	99430939	0	1	1975	0
chr13	99429216	99429626	H9_polyA+.20586	0	.	99429216	99429626	0	1	410	0
chr13	99429268	99429625	A549_Myers.35302	0	.	99429268	99429625	0	1	357	0
chr13	99429691	99430846	H9_polyA+.20585	0	.	99429691	99430846	0	1	1155	0
chr13	99429807	99430670	prostate_carcinoma.44663	0	.	99429807	99430670	0	1	863	0
chr13	99429860	99430615	H9_polyA-_Chen.6449	0	.	99429860	99430615	0	1	755	0
chr13	99429924	99430400	NEC_from_H9.33854	0	.	99429924	99430400	0	1	476	0
chr13	99429985	99430393	H1_rRNA-depleted_UCSD_REMC.40709	0	.	99429985	99430393	0	1	408	0
chr13	99430297	99430724	A549_Myers.35304	0	.	99430297	99430724	0	1	427	0
chr13	99430724	99431211	A549_Myers.35305	0	.	99430724	99431211	0	1	487	0
chr13	99438490	99439176	H1_polyA+.52174	0	.	99438490	99439176	0	1	686	0
chr13	99439251	99441338	H1_polyA+.52175	0	.	99439251	99441338	0	1	2087	0
chr13	99441563	99442292	H1_polyA+.52176	0	.	99441563	99442292	0	1	729	0
chr13	99455241	99455925	H1_polyA+.52178	0	.	99455241	99455925	0	1	684	0
chr13	99511215	99512272	H1_polyA+.52367	0	.	99511215	99512272	0	1	1057	0
chr13	99522880	99523883	brain_AmbionMAQC.19686	0	.	99522880	99523883	0	1	1003	0
chr13	99525401	99526724	BT474_Burge_Thompson.14776	0	.	99525401	99526724	0	1	1323	0
chr13	99525433	99526682	HepG2_Caltech_ENCODE.16212	0	.	99525433	99526682	0	1	1249	0
chr13	99525439	99526727	T47D_Burge_Thompson.12803	0	.	99525439	99526727	0	1	1288	0
chr13	99525515	99526426	melanoma_Garraway_short_term_cultures.30372	0	.	99525515	99526426	0	1	911	0
chr13	99525543	99526820	B_cells_Cheung.89346	0	.	99525543	99526820	0	1	1277	0
chr13	99525793	99526682	B_Cells_Pritchard.1567595	0	-	99525793	99526682	0	1	889	0
chr13	99525876	99526708	MDAMB468_Thompson.11030	0	.	99525876	99526708	0	1	832	0
chr13	99525891	99526675	liver_polyA+.62008	0	.	99525891	99526675	0	1	784	0
chr13	99525898	99526422	HeLa_polyA+_Chen.16299	0	.	99525898	99526422	0	1	524	0
chr13	99525900	99526631	REMC_LuminalBreast.45727	0	.	99525900	99526631	0	1	731	0
chr13	99525937	99526696	prostate_normal.26092	0	.	99525937	99526696	0	1	759	0
chr13	99525937	99526688	H9_polyA+.20592	0	.	99525937	99526688	0	1	751	0
chr13	99525937	99526658	MDAMB231_Thompson.10046	0	.	99525937	99526658	0	1	721	0
chr13	99526932	99528224	H1_polyA+.52371	0	.	99526932	99528224	0	1	1292	0
chr13	99533266	99534344	H1_polyA+.52377	0	.	99533266	99534344	0	1	1078	0
chr13	99533302	99534317	BT474_Burge_Thompson.14779	0	.	99533302	99534317	0	1	1015	0
chr13	100318444	100318956	B_Cells_Pritchard.1569731	0	.	100318444	100318956	0	1	512	0
chr13	102230898	102232255	H1_polyA+.52551	0	.	102230898	102232255	0	1	1357	0
chr13	102231038	102231976	REMC_MyoepithelialBreast.43271	0	.	102231038	102231976	0	1	938	0
chr13	102347826	102348394	B_cells_Cheung.89713	0	.	102347826	102348394	0	1	568	0
chr13	102347871	102348402	brain_AmbionMAQC.19780	0	.	102347871	102348402	0	1	531	0
chr13	102353011	102353878	B_Cells_Pritchard.1573633	0	.	102353011	102353878	0	1	867	0
chr13	102353082	102353940	B_cells_Cheung.89714	0	.	102353082	102353940	0	1	858	0
chr13	102353408	102383868	pHIT000086620	0	-	102353408	102383868	0	4	564,48,127,86	0,2183,25992,30374
chr13	102353408	102383868	pHIT000023362	0	-	102353408	102383868	0	3	564,127,86	0,25992,30374
chr13	102915055	102915368	T47D_Burge_Thompson.12840	0	.	102915055	102915368	0	1	313	0
chr13	103583318	103584578	prostate_carcinoma.44845	0	.	103583318	103584578	0	1	1260	0
chr13	104231242	104231859	B_Cells_Pritchard.1577021	0	.	104231242	104231859	0	1	617	0
chr13	104634727	104635249	MIP101.31014	0	.	104634727	104635249	0	1	522	0
chr13	105157218	105212145	ENST00000454555	0	+	105157218	105212145	0	4	49,530,124,533	0,231,845,54394
chr13	105157218	105212145	HIT000014659	0	+	105157218	105212145	0	4	49,530,124,533	0,231,845,54394
chr13	105157240	105157980	HIT000389091	0	+	105157240	105157980	0	2	27,531	0,209
chr13	105157240	105157972	HIT000389227	0	+	105157240	105157972	0	2	27,523	0,209
chr13	105404530	105405708	H1_polyA+.52567	0	.	105404530	105405708	0	1	1178	0
chr13	105404745	105405705	melanoma_Garraway_short_term_cultures.30448	0	.	105404745	105405705	0	1	960	0
chr13	105424966	105426069	H1_polyA+.52572	0	.	105424966	105426069	0	1	1103	0
chr13	105442019	105442521	H9_polyA+.20656	0	.	105442019	105442521	0	1	502	0
chr13	105446125	105447498	H1_polyA+.52579	0	.	105446125	105447498	0	1	1373	0
chr13	105448585	105449583	H1_polyA+.52580	0	.	105448585	105449583	0	1	998	0
chr13	105477239	105478830	H1_polyA+.52588	0	.	105477239	105478830	0	1	1591	0
chr13	105486659	105487964	H1_polyA+.52590	0	.	105486659	105487964	0	1	1305	0
chr13	105487288	105522932	pHIT000112918	0	+	105487288	105522932	0	3	101,227,32	0,25001,35612
chr13	105507469	105510110	H1_polyA+.52595	0	.	105507469	105510110	0	1	2641	0
chr13	105523859	105525394	H1_polyA+.52601	0	.	105523859	105525394	0	1	1535	0
chr13	105538576	105539341	H1_polyA+.52608	0	.	105538576	105539341	0	1	765	0
chr13	105539444	105541218	H1_polyA+.52609	0	.	105539444	105541218	0	1	1774	0
chr13	105540861	105541225	brain_AmbionMAQC.19790	0	.	105540861	105541225	0	1	364	0
chr13	105545450	105547486	H1_polyA+.52612	0	.	105545450	105547486	0	1	2036	0
chr13	105554203	105555560	H1_polyA+.52613	0	.	105554203	105555560	0	1	1357	0
chr13	105582216	105584370	H1_polyA+.52618	0	.	105582216	105584370	0	1	2154	0
chr13	105600236	105601235	H1_polyA+.52622	0	.	105600236	105601235	0	1	999	0
chr13	105602914	105604858	melanoma_Garraway_short_term_cultures.30452	0	.	105602914	105604858	0	1	1944	0
chr13	105617218	105618336	H1_polyA+.52627	0	.	105617218	105618336	0	1	1118	0
chr13	105781980	105782329	B_cells_Cheung.89730	0	.	105781980	105782329	0	1	349	0
chr13	105804452	105806756	B_cells_Cheung.89733	0	.	105804452	105806756	0	1	2304	0
chr13	105807832	105809979	REMC_LuminalBreast.46025	0	.	105807832	105809979	0	1	2147	0
chr13	105808458	105809543	B_Cells_Pritchard.1579853	0	.	105808458	105809543	0	1	1085	0
chr13	105808689	105809355	B_cells_Cheung.89737	0	.	105808689	105809355	0	1	666	0
chr13	105825296	105825816	B_Cells_Pritchard.1579911	0	.	105825296	105825816	0	1	520	0
chr13	105826941	105828049	MCF10A_Thompson.9783	0	+	105826941	105828049	0	3	73,240,501	0,252,607
chr13	105897399	105919537	pHIT000023363	0	-	105897399	105919537	0	4	108,54,112,200	0,910,8168,21938
chr13	105905468	105919537	pHIT000112919	0	-	105905468	105919537	0	2	211,200	0,13869
chr13	105922146	105923587	Rinn_00022104	0	-	105922146	105923587	0	2	989,331	0,1110
chr13	105924333	105926261	REMC_BreastStem.23431	0	.	105924333	105926261	0	1	1928	0
chr13	105936846	105938055	REMC_BreastStem.23435	0	.	105936846	105938055	0	1	1209	0
chr13	106046427	106046788	BT474_Burge_Thompson.14801	0	.	106046427	106046788	0	1	361	0
chr13	106068158	106081452	HIT000023368	0	+	106068158	106081452	0	4	224,748,123,317	0,8577,10209,12977
chr13	106075708	106076912	H1_polyA+.52628	0	.	106075708	106076912	0	1	1204	0
chr13	106078296	106082073	Rinn_00022215	0	+	106078296	106082073	0	2	194,939	0,2838
chr13	106128337	106141259	pHIT000112923	0	-	106128337	106141259	0	4	132,107,160,108	0,224,3650,12814
chr13	106209476	106210905	pHIT000023370	0	-	106209476	106210905	0	2	217,176	0,1253
chr13	106223878	106224528	H1_polyA+.52631	0	.	106223878	106224528	0	1	650	0
chr13	106367953	106368333	B_Cells_Pritchard.1581079	0	.	106367953	106368333	0	1	380	0
chr13	107325184	107326637	K562.20638	0	.	107325184	107326637	0	1	1453	0
chr13	107345124	107345469	K562.20626	0	.	107345124	107345469	0	1	345	0
chr13	107355009	107356735	K562.20645	0	.	107355009	107356735	0	1	1726	0
chr13	107381413	107381771	pHIT000086872	0	+	107381413	107381771	0	2	108,198	0,160
chr13	107391764	107392143	B_Cells_Pritchard.1582823	0	.	107391764	107392143	0	1	379	0
chr13	107778995	107779379	B_Cells_Pritchard.1583429	0	.	107778995	107779379	0	1	384	0
chr13	107945625	107946328	MeI_Garraway.8057	0	.	107945625	107946328	0	1	703	0
chr13	107946002	107946319	MeWo_Garraway.16192	0	.	107946002	107946319	0	1	317	0
chr13	108659871	108660686	MIP101.31068	0	.	108659871	108660686	0	1	815	0
chr13	108669489	108675330	HeLa_polyA+_Chen.16377	0	.	108669489	108675330	0	1	5841	0
chr13	108675411	108690163	HeLa_polyA+_Chen.16475	0	.	108675411	108690163	0	1	14752	0
chr13	108675411	108719401	HeLa_polyA+_Chen.16477	0	-	108675411	108719401	0	2	10607,117	0,43873
chr13	108675617	108680026	HeLa_polyA-_Chen.8759	0	.	108675617	108680026	0	1	4409	0
chr13	108675645	108678535	MIP101.31071	0	.	108675645	108678535	0	1	2890	0
chr13	108679219	108680026	MDAMB231_Thompson.10113	0	.	108679219	108680026	0	1	807	0
chr13	108679907	108682119	HeLa_Bartel_miR-155_12hr.15142	0	-	108679907	108682119	0	2	72,319	0,1893
chr13	108683389	108683923	B_Cells_Pritchard.1585365	0	.	108683389	108683923	0	1	534	0
chr13	108683814	108686760	HeLa_polyA-_Chen.8761	0	.	108683814	108686760	0	1	2946	0
chr13	108684434	108714502	khalil_678	0	.	108684434	108714502	0	8	2394,639,270,91,60,872,343,206	0,6319,7076,9592,21473,22938,25637,29862
chr13	108684759	108686219	MDAMB231_Thompson.10114	0	.	108684759	108686219	0	1	1460	0
chr13	108685196	108685703	B_cells_Cheung.89852	0	.	108685196	108685703	0	1	507	0
chr13	108691221	108694665	HeLa_polyA+_Chen.16479	0	.	108691221	108694665	0	1	3444	0
chr13	108691882	108694347	HeLa_polyA-_Chen.8762	0	.	108691882	108694347	0	1	2465	0
chr13	108703073	108705716	HeLa_polyA+_Chen.16484	0	.	108703073	108705716	0	1	2643	0
chr13	108703093	108704080	HeLa_polyA-_Chen.8770	0	.	108703093	108704080	0	1	987	0
chr13	108713750	108715504	HeLa_polyA+_Chen.16490	0	.	108713750	108715504	0	1	1754	0
chr13	108714400	108715477	B_cells_Cheung.89859	0	.	108714400	108715477	0	1	1077	0
chr13	108714899	108715384	B_Cells_Pritchard.1585447	0	.	108714899	108715384	0	1	485	0
chr13	108716155	108716516	BT20_Thompson.9637	0	.	108716155	108716516	0	1	361	0
chr13	108716250	108716614	MDAMB231_Thompson.10117	0	.	108716250	108716614	0	1	364	0
chr13	108716330	108716827	melanoma_Garraway_short_term_cultures.30475	0	.	108716330	108716827	0	1	497	0
chr13	108718593	108719401	HeLa_polyA+_Chen.16476	0	.	108718593	108719401	0	1	808	0
chr13	108718633	108719087	H1_polyA+.52836	0	.	108718633	108719087	0	1	454	0
chr13	108721322	108727559	HeLa_polyA+_Chen.16379	0	.	108721322	108727559	0	1	6237	0
chr13	108733038	108733868	B_cells_Cheung.89867	0	.	108733038	108733868	0	1	830	0
chr13	108739804	108742612	B_cells_Cheung.89872	0	.	108739804	108742612	0	1	2808	0
chr13	108740324	108741742	B_Cells_Pritchard.1585533	0	.	108740324	108741742	0	1	1418	0
chr13	108743235	108745605	B_cells_Cheung.89875	0	.	108743235	108745605	0	1	2370	0
chr13	108743593	108744229	MDAMB468_Thompson.11079	0	.	108743593	108744229	0	1	636	0
chr13	108757551	108758026	B_Cells_Pritchard.1585589	0	.	108757551	108758026	0	1	475	0
chr13	109157175	109158346	REMC_MyoepithelialBreast.43316	0	.	109157175	109158346	0	1	1171	0
chr13	109157594	109158896	K562.20668	0	.	109157594	109158896	0	1	1302	0
chr13	109161334	109161680	K562.20669	0	.	109161334	109161680	0	1	346	0
chr13	109178776	109180565	REMC_LuminalBreast.46061	0	.	109178776	109180565	0	1	1789	0
chr13	109183447	109184116	REMC_MyoepithelialBreast.43322	0	.	109183447	109184116	0	1	669	0
chr13	109183947	109184361	A549_Myers.35559	0	.	109183947	109184361	0	1	414	0
chr13	109186597	109193001	REMC_MyoepithelialBreast.43325	0	.	109186597	109193001	0	1	6404	0
chr13	109189697	109192907	REMC_LuminalBreast.46065	0	.	109189697	109192907	0	1	3210	0
chr13	109194172	109197042	REMC_BreastStem.23472	0	.	109194172	109197042	0	1	2870	0
chr13	109195375	109197392	MIP101.31060	0	.	109195375	109197392	0	1	2017	0
chr13	109239456	109260755	pHIT000112934	0	+	109239456	109260755	0	3	208,201,644	0,7310,20655
chr13	109240113	109241315	prostate_carcinoma.44912	0	.	109240113	109241315	0	1	1202	0
chr13	109240272	109241084	melanoma_Garraway_short_term_cultures.30489	0	.	109240272	109241084	0	1	812	0
chr13	109253270	109253895	prostate_carcinoma.44913	0	.	109253270	109253895	0	1	625	0
chr13	109258391	109259438	REMC_MyoepithelialBreast.43331	0	.	109258391	109259438	0	1	1047	0
chr13	109261896	109262518	prostate_carcinoma.44915	0	.	109261896	109262518	0	1	622	0
chr13	109966887	109967239	B_cells_Cheung.89929	0	.	109966887	109967239	0	1	352	0
chr13	109970171	109971367	B_Cells_Pritchard.1588435	0	+	109970171	109971367	0	1	1196	0
chr13	109971090	109971424	liver_polyA+.62668	0	.	109971090	109971424	0	1	334	0
chr13	110025565	110026535	MIP101.31097	0	.	110025565	110026535	0	1	970	0
chr13	110025620	110026492	B_Cells_Pritchard.1588217	0	.	110025620	110026492	0	1	872	0
chr13	110054381	110055341	REMC_LuminalBreast.46090	0	.	110054381	110055341	0	1	960	0
chr13	110054572	110055227	B_cells_Cheung.89943	0	.	110054572	110055227	0	1	655	0
chr13	110061253	110064205	REMC_LuminalBreast.46093	0	.	110061253	110064205	0	1	2952	0
chr13	110063433	110064270	B_Cells_Pritchard.1588361	0	-	110063433	110064270	0	1	837	0
chr13	110175202	110177689	REMC_LuminalBreast.46120	0	.	110175202	110177689	0	1	2487	0
chr13	110175573	110176504	REMC_BreastStem.23525	0	.	110175573	110176504	0	1	931	0
chr13	110175609	110176393	H1_polyA+.52894	0	.	110175609	110176393	0	1	784	0
chr13	110175625	110176445	REMC_MyoepithelialBreast.43378	0	.	110175625	110176445	0	1	820	0
chr13	110175718	110176480	B_cells_Cheung.89971	0	.	110175718	110176480	0	1	762	0
chr13	110175788	110176385	prostate_carcinoma.45043	0	.	110175788	110176385	0	1	597	0
chr13	110176562	110177631	H1_polyA+.52895	0	.	110176562	110177631	0	1	1069	0
chr13	110176573	110177682	REMC_MyoepithelialBreast.43379	0	.	110176573	110177682	0	1	1109	0
chr13	110176590	110177671	B_cells_Cheung.89972	0	.	110176590	110177671	0	1	1081	0
chr13	110185867	110186703	REMC_MyoepithelialBreast.43385	0	.	110185867	110186703	0	1	836	0
chr13	110185988	110186701	REMC_BreastStem.23529	0	.	110185988	110186701	0	1	713	0
chr13	110186052	110187093	REMC_LuminalBreast.46124	0	.	110186052	110187093	0	1	1041	0
chr13	110187263	110188925	REMC_LuminalBreast.46125	0	.	110187263	110188925	0	1	1662	0
chr13	110187408	110188220	REMC_BreastStem.23530	0	.	110187408	110188220	0	1	812	0
chr13	110193062	110194001	REMC_MyoepithelialBreast.43387	0	.	110193062	110194001	0	1	939	0
chr13	110199022	110200876	REMC_MyoepithelialBreast.43389	0	.	110199022	110200876	0	1	1854	0
chr13	110199925	110201225	REMC_LuminalBreast.46131	0	.	110199925	110201225	0	1	1300	0
chr13	110200026	110201494	H1_polyA+.52900	0	.	110200026	110201494	0	1	1468	0
chr13	110200632	110201465	B_Cells_Pritchard.1588559	0	.	110200632	110201465	0	1	833	0
chr13	110213788	110215142	REMC_MyoepithelialBreast.43394	0	.	110213788	110215142	0	1	1354	0
chr13	110260008	110263432	HIT000093803	0	-	110260008	110263432	0	1	3424	0
chr13	110262098	110263104	testes_Burge.23547	0	.	110262098	110263104	0	1	1006	0
chr13	110263653	110264214	testes_Burge.23550	0	.	110263653	110264214	0	1	561	0
chr13	110269156	110269564	B_cells_Cheung.89986	0	.	110269156	110269564	0	1	408	0
chr13	110269163	110270084	MIP101.31110	0	.	110269163	110270084	0	1	921	0
chr13	110270831	110320418	pHIT000023402	0	-	110270831	110320418	0	4	75,66,106,326	0,11260,11456,49261
chr13	110272474	110289473	Rinn_00021505	0	+	110272474	110289473	0	3	421,130,911	0,2735,16088
chr13	110272475	110289683	HIT000283423	0	+	110272475	110289683	0	4	420,129,909,120	0,2735,16088,17088
chr13	110272863	110278016	H1_polyA+.52903	0	+	110272863	110278016	0	2	32,2806	0,2347
chr13	110275208	110289494	Rinn_00021905	0	+	110275208	110289494	0	2	737,932	0,13354
chr13	110276084	110277081	K562.20709	0	.	110276084	110277081	0	1	997	0
chr13	110276652	110277514	B_Cells_Pritchard.1588793	0	.	110276652	110277514	0	1	862	0
chr13	110278256	110285326	H1_polyA+.52904	0	.	110278256	110285326	0	1	7070	0
chr13	110278256	110289430	H1_polyA+.52906	0	+	110278256	110289430	0	2	2805,867	0,10307
chr13	110279194	110279704	B_Cells_Pritchard.1588803	0	.	110279194	110279704	0	1	510	0
chr13	110282287	110320418	pHIT000112955	0	-	110282287	110320418	0	2	106,326	0,37805
chr13	110282780	110283494	K562.20715	0	.	110282780	110283494	0	1	714	0
chr13	110288225	110289430	H1_polyA+.52905	0	.	110288225	110289430	0	1	1205	0
chr13	110288655	110289400	HepG2_Caltech_ENCODE.16309	0	.	110288655	110289400	0	1	745	0
chr13	110300847	110301534	H1_polyA+.52910	0	.	110300847	110301534	0	1	687	0
chr13	110313622	110320640	REMC_LuminalBreast.46141	0	-	110313622	110320640	0	2	6356,548	0,6470
chr13	110313622	110320640	REMC_LuminalBreast.46140	0	+	110313622	110320640	0	2	3903,2948	0,4070
chr13	110313622	110320640	REMC_LuminalBreast.46139	0	.	110313622	110320640	0	1	7018	0
chr13	110313842	110320930	Rinn_00022115	0	-	110313842	110320930	0	2	6132,839	0,6249
chr13	110314222	110321502	K562.20721	0	-	110314222	110321502	0	2	5756,1410	0,5870
chr13	110314222	110321502	K562.20722	0	.	110314222	110321502	0	1	7280	0
chr13	110314287	110321508	BT20_Thompson.9668	0	.	110314287	110321508	0	1	7221	0
chr13	110314287	110321508	BT20_Thompson.9667	0	-	110314287	110321508	0	2	5691,1416	0,5805
chr13	110314298	110315148	MDAMB468_Thompson.11092	0	.	110314298	110315148	0	1	850	0
chr13	110314318	110320599	HIT000056279	0	-	110314318	110320599	0	1	6281	0
chr13	110314334	110320656	NR_027701	0	-	110314334	110320656	0	1	6322	0
chr13	110314462	110320627	HeLa_polyA+_Chen.16407	0	.	110314462	110320627	0	1	6165	0
chr13	110314462	110320627	HeLa_polyA+_Chen.16406	0	-	110314462	110320627	0	2	5516,535	0,5630
chr13	110314627	110320838	Rinn_00022116	0	-	110314627	110320838	0	2	5351,747	0,5464
chr13	110314726	110316163	REMC_BreastStem.23505	0	.	110314726	110316163	0	1	1437	0
chr13	110314735	110320617	HIT000026877	0	-	110314735	110320617	0	1	5882	0
chr13	110314774	110315124	skeletal_muscle_Burge.13156	0	.	110314774	110315124	0	1	350	0
chr13	110314803	110315170	MCF7_Burge_Thompson.13497	0	.	110314803	110315170	0	1	367	0
chr13	110315461	110316268	MDAMB231_Thompson.10132	0	.	110315461	110316268	0	1	807	0
chr13	110315492	110316273	MDAMB468_Thompson.11091	0	.	110315492	110316273	0	1	781	0
chr13	110316374	110318751	MCF7_Burge_Thompson.13501	0	.	110316374	110318751	0	1	2377	0
chr13	110316374	110319016	MDAMB231_Thompson.10133	0	.	110316374	110319016	0	1	2642	0
chr13	110316384	110320574	MDAMB468_Thompson.11093	0	.	110316384	110320574	0	1	4190	0
chr13	110316609	110317809	HepG2_Caltech_ENCODE.16310	0	.	110316609	110317809	0	1	1200	0
chr13	110316635	110318646	MCF10A_Thompson.9825	0	.	110316635	110318646	0	1	2011	0
chr13	110316666	110321262	prostate_carcinoma.45055	0	+	110316666	110321262	0	2	1787,144	0,4452
chr13	110316666	110318739	prostate_carcinoma.45054	0	.	110316666	110318739	0	1	2073	0
chr13	110316814	110318741	prostate_normal.26287	0	.	110316814	110318741	0	1	1927	0
chr13	110316831	110317568	REMC_BreastStem.23506	0	.	110316831	110317568	0	1	737	0
chr13	110316878	110318263	BT474_Burge_Thompson.14823	0	.	110316878	110318263	0	1	1385	0
chr13	110316892	110317741	skeletal_muscle_Burge.13157	0	.	110316892	110317741	0	1	849	0
chr13	110318865	110320551	MCF10A_Thompson.9826	0	.	110318865	110320551	0	1	1686	0
chr13	110318880	110320633	MCF7_Burge_Thompson.13505	0	.	110318880	110320633	0	1	1753	0
chr13	110318932	110320935	prostate_normal.26288	0	.	110318932	110320935	0	1	2003	0
chr13	110319048	110320633	melanoma_Garraway_short_term_cultures.30525	0	.	110319048	110320633	0	1	1585	0
chr13	110319048	110320633	melanoma_Garraway_short_term_cultures.30524	0	-	110319048	110320633	0	2	926,541	0,1044
chr13	110319057	110321008	prostate_carcinoma.45056	0	.	110319057	110321008	0	1	1951	0
chr13	110319082	110320627	MDAMB231_Thompson.10134	0	.	110319082	110320627	0	1	1545	0
chr13	110319085	110319990	HepG2_Caltech_ENCODE.16311	0	.	110319085	110319990	0	1	905	0
chr13	110319122	110320617	BT474_Burge_Thompson.14824	0	.	110319122	110320617	0	1	1495	0
chr13	110319237	110320573	HIT000426822	0	-	110319237	110320573	0	1	1336	0
chr13	110319404	110320148	REMC_MyoepithelialBreast.43398	0	.	110319404	110320148	0	1	744	0
chr13	110319529	110320038	HeLa_Bartel_miR-1_12hr.14809	0	.	110319529	110320038	0	1	509	0
chr13	110319560	110320698	HIT000246675	0	-	110319560	110320698	0	1	1138	0
chr13	110319578	110320163	HIT000338086	0	-	110319578	110320163	0	1	585	0
chr13	110319647	110320047	REMC_BreastStem.23508	0	.	110319647	110320047	0	1	400	0
chr13	110319718	110320204	breast_Burge.17896	0	.	110319718	110320204	0	1	486	0
chr13	110319728	110320353	skeletal_muscle_Burge.13164	0	.	110319728	110320353	0	1	625	0
chr13	110319759	110320352	HeLa_Bartel_WT_12hr.15242	0	-	110319759	110320352	0	2	219,260	0,333
chr13	110319814	110320127	B_cells_Cheung.89990	0	.	110319814	110320127	0	1	313	0
chr13	110320320	110321001	A549_Myers.35638	0	.	110320320	110321001	0	1	681	0
chr13	110323872	110324947	H1_polyA+.53514	0	.	110323872	110324947	0	1	1075	0
chr13	110323996	110324980	prostate_carcinoma.45058	0	.	110323996	110324980	0	1	984	0
chr13	110324046	110324982	prostate_normal.26289	0	.	110324046	110324982	0	1	936	0
chr13	110324133	110324943	A549_Myers.35639	0	.	110324133	110324943	0	1	810	0
chr13	110324173	110324816	H9_polyA+.20701	0	.	110324173	110324816	0	1	643	0
chr13	110368423	110369852	REMC_MyoepithelialBreast.43407	0	.	110368423	110369852	0	1	1429	0
chr13	110368423	110369216	B_cells_Cheung.90513	0	.	110368423	110369216	0	1	793	0
chr13	110368487	110369195	B_Cells_Pritchard.1588977	0	.	110368487	110369195	0	1	708	0
chr13	110370010	110370707	B_cells_Cheung.90515	0	.	110370010	110370707	0	1	697	0
chr13	110370083	110372510	B_Cells_Pritchard.1588981	0	.	110370083	110372510	0	1	2427	0
chr13	110408017	110408933	REMC_BreastStem.23535	0	.	110408017	110408933	0	1	916	0
chr13	110415999	110432745	K562.20735	0	+	110415999	110432745	0	2	468,13932	0,2814
chr13	110417613	110418423	K562.20737	0	.	110417613	110418423	0	1	810	0
chr13	110421766	110422158	B_Cells_Pritchard.1589113	0	.	110421766	110422158	0	1	392	0
chr13	110424732	110425413	MDAMB468_Thompson.11108	0	.	110424732	110425413	0	1	681	0
chr13	110426331	110427378	MDAMB468_Thompson.11106	0	.	110426331	110427378	0	1	1047	0
chr13	110442112	110442666	B_Cells_Pritchard.1589187	0	.	110442112	110442666	0	1	554	0
chr13	110509082	110509759	B_cells_Cheung.90160	0	.	110509082	110509759	0	1	677	0
chr13	110509094	110509759	B_Cells_Pritchard.1589419	0	.	110509094	110509759	0	1	665	0
chr13	110526332	110526670	B_Cells_Pritchard.1589489	0	.	110526332	110526670	0	1	338	0
chr13	110550732	110551305	B_Cells_Pritchard.1589561	0	.	110550732	110551305	0	1	573	0
chr13	110757565	110758711	pHIT000023407	0	-	110757565	110758711	0	1	1146	0
chr13	110758451	110760372	B_Cells_Pritchard.1590017	0	.	110758451	110760372	0	1	1921	0
chr13	110759015	110759714	B_cells_Cheung.90316	0	.	110759015	110759714	0	1	699	0
chr13	110763024	110764951	B_Cells_Pritchard.1590027	0	.	110763024	110764951	0	1	1927	0
chr13	110796037	110797259	B_Cells_Pritchard.1590031	0	.	110796037	110797259	0	1	1222	0
chr13	110796350	110796746	B_cells_Cheung.90177	0	.	110796350	110796746	0	1	396	0
chr13	110796918	110797317	B_cells_Cheung.90178	0	.	110796918	110797317	0	1	399	0
chr13	110804954	110805736	B_cells_Cheung.90179	0	.	110804954	110805736	0	1	782	0
chr13	110805099	110805758	B_Cells_Pritchard.1590063	0	.	110805099	110805758	0	1	659	0
chr13	110924720	110941120	pHIT000112961	0	-	110924720	110941120	0	5	104,97,129,103,20	0,1897,5901,6500,16380
chr13	111565213	111566604	brain_AmbionMAQC.19904	0	.	111565213	111566604	0	1	1391	0
chr13	111595671	111597019	H1_polyA+.52975	0	.	111595671	111597019	0	1	1348	0
chr13	111597175	111598681	H1_polyA+.52976	0	.	111597175	111598681	0	1	1506	0
chr13	111677825	111678268	A549_Myers.35692	0	.	111677825	111678268	0	1	443	0
chr13	111705337	111734566	pHIT000112963	0	-	111705337	111734566	0	4	42,1055,78,64	0,11898,28226,29165
chr13	111717235	111734566	pHIT000112971	0	-	111717235	111734566	0	3	1055,78,64	0,16328,17267
chr13	111759063	111759496	brain_AmbionMAQC.19908	0	.	111759063	111759496	0	1	433	0
chr13	111797809	111810202	Rinn_00021911	0	+	111797809	111810202	0	3	137,160,177	0,2820,12216
chr13	111806274	111812580	brain_AmbionMAQC.19914	0	+	111806274	111812580	0	2	3400,2554	0,3752
chr13	111807416	111809832	H1_polyA+.52981	0	.	111807416	111809832	0	1	2416	0
chr13	111807548	111807895	NEC_from_H9.34145	0	.	111807548	111807895	0	1	347	0
chr13	111809906	111812580	brain_AmbionMAQC.19913	0	.	111809906	111812580	0	1	2674	0
chr13	111810719	111811775	H1_polyA+.52982	0	.	111810719	111811775	0	1	1056	0
chr13	111811140	111812887	HIT000011759	0	+	111811140	111812887	0	1	1747	0
chr13	111812084	111812572	NEC_from_H9.34148	0	.	111812084	111812572	0	1	488	0
chr13	111857448	111863026	HIT000095346	0	-	111857448	111863026	0	2	674,1079	0,4499
chr13	111872669	111897075	pHIT000112970	0	+	111872669	111897075	0	5	180,160,90,101,204	0,987,2230,9921,24202
chr13	111884836	111897302	Rinn_00022120	0	-	111884836	111897302	0	3	597,54,172	0,6944,12294
chr13	111885170	111891842	Rinn_00022316	0	-	111885170	111891842	0	2	263,62	0,6610
chr13	111899663	111903332	HIT000306068	0	+	111899663	111903332	0	2	60,2787	0,882
chr13	111899663	111903313	Rinn_00021602	0	+	111899663	111903313	0	2	60,2769	0,881
chr13	111899664	111903313	ENST00000507553	0	+	111899664	111903313	0	2	59,2768	0,881
chr13	111904050	111904378	A549_Myers.35693	0	.	111904050	111904378	0	1	328	0
chr13	111910127	111910668	liver_polyA+.62684	0	.	111910127	111910668	0	1	541	0
chr13	111949553	111950088	A549_Myers.35695	0	.	111949553	111950088	0	1	535	0
chr13	111959018	111975315	HIT000093556	0	-	111959018	111975315	0	9	167,180,189,103,161,223,75,112,749	0,295,2922,5219,5452,6260,14404,14774,15548
chr13	111959042	111975315	ENST00000503344	0	-	111959042	111975315	0	9	143,180,189,103,161,223,75,112,749	0,271,2898,5195,5428,6236,14380,14750,15524
chr13	112015780	112024073	Rinn_00021603	0	+	112015780	112024073	0	2	6251,648	0,7645
chr13	112015781	112024093	HIT000057754	0	+	112015781	112024093	0	2	6250,667	0,7645
chr13	112015781	112024073	ENST00000514686	0	+	112015781	112024073	0	2	6250,647	0,7645
chr13	112057407	112058460	liver_polyA+.62700	0	-	112057407	112058460	0	2	122,660	0,393
chr13	112143566	112143963	liver_polyA+.62722	0	.	112143566	112143963	0	1	397	0
chr13	112144079	112144399	liver_polyA+.62723	0	.	112144079	112144399	0	1	320	0
chr13	112146606	112147147	A549_Myers.35696	0	.	112146606	112147147	0	1	541	0
chr13	112153736	112154151	liver_polyA+.62735	0	.	112153736	112154151	0	1	415	0
chr13	112155092	112155402	liver_polyA+.62737	0	.	112155092	112155402	0	1	310	0
chr13	112159688	112160275	B_Cells_Pritchard.1592505	0	.	112159688	112160275	0	1	587	0
chr13	112322259	112323338	H1_polyA+.53019	0	.	112322259	112323338	0	1	1079	0
chr13	112339058	112339522	A549_Myers.35703	0	.	112339058	112339522	0	1	464	0
chr13	112390083	112392130	HIT000013699	0	-	112390083	112392130	0	1	2047	0
chr13	112390676	112392136	Rinn_00022318	0	-	112390676	112392136	0	2	508,160	0,1300
chr13	112594755	112595641	REMC_LuminalBreast.46294	0	.	112594755	112595641	0	1	886	0
chr13	113253590	113256898	prostate_carcinoma.45316	0	+	113253590	113256898	0	2	288,2551	0,757
chr13	113253590	113256898	prostate_carcinoma.45315	0	.	113253590	113256898	0	1	3308	0
chr13	113254331	113255536	MDAMB231_Thompson.10198	0	.	113254331	113255536	0	1	1205	0
chr13	113254606	113255631	MCF10A_Thompson.9857	0	.	113254606	113255631	0	1	1025	0
chr13	113255050	113255600	MIP101.31282	0	.	113255050	113255600	0	1	550	0
chr13	113255069	113257134	B_cells_Cheung.90481	0	.	113255069	113257134	0	1	2065	0
chr13	113255170	113256219	brain_AmbionMAQC.20135	0	.	113255170	113256219	0	1	1049	0
chr13	113255669	113256900	prostate_normal.26447	0	.	113255669	113256900	0	1	1231	0
chr13	113255721	113256494	melanoma_Garraway_short_term_cultures.30642	0	.	113255721	113256494	0	1	773	0
chr13	113258304	113260083	B_cells_Cheung.90483	0	.	113258304	113260083	0	1	1779	0
chr13	113258510	113260101	B_Cells_Pritchard.1594859	0	.	113258510	113260101	0	1	1591	0
chr13	113258613	113260064	H1_polyA+.53277	0	.	113258613	113260064	0	1	1451	0
chr13	113259193	113260085	HepG2_Caltech_ENCODE.16464	0	.	113259193	113260085	0	1	892	0
chr13	113259332	113259928	prostate_carcinoma.45318	0	.	113259332	113259928	0	1	596	0
chr13	113259408	113259741	A549_Myers.35822	0	.	113259408	113259741	0	1	333	0
chr13	113259504	113260153	REMC_LuminalBreast.46468	0	.	113259504	113260153	0	1	649	0
chr13	113263101	113263898	H1_polyA+.53278	0	.	113263101	113263898	0	1	797	0
chr13	113264736	113266441	REMC_LuminalBreast.46470	0	.	113264736	113266441	0	1	1705	0
chr13	113264893	113266928	H1_polyA+.53279	0	.	113264893	113266928	0	1	2035	0
chr13	113265172	113265959	prostate_carcinoma.45319	0	.	113265172	113265959	0	1	787	0
chr13	113265262	113266072	B_Cells_Pritchard.1594875	0	.	113265262	113266072	0	1	810	0
chr13	113265392	113265991	melanoma_Garraway_short_term_cultures.30643	0	.	113265392	113265991	0	1	599	0
chr13	113265427	113266341	B_cells_Cheung.90487	0	.	113265427	113266341	0	1	914	0
chr13	113265576	113265969	CD4_Plagnol_resting.27988	0	.	113265576	113265969	0	1	393	0
chr13	113266274	113267447	B_Cells_Pritchard.1594877	0	.	113266274	113267447	0	1	1173	0
chr13	113266440	113267164	B_cells_Cheung.90488	0	.	113266440	113267164	0	1	724	0
chr13	113266514	113267173	REMC_LuminalBreast.46471	0	.	113266514	113267173	0	1	659	0
chr13	113267600	113269664	H1_polyA+.53280	0	.	113267600	113269664	0	1	2064	0
chr13	113267824	113268558	B_cells_Cheung.90490	0	.	113267824	113268558	0	1	734	0
chr13	113269910	113270484	REMC_LuminalBreast.46472	0	.	113269910	113270484	0	1	574	0
chr13	113269951	113270481	H1_polyA+.53281	0	.	113269951	113270481	0	1	530	0
chr13	113269975	113271111	HepG2_Caltech_ENCODE.16469	0	.	113269975	113271111	0	1	1136	0
chr13	113269990	113270470	REMC_MyoepithelialBreast.43685	0	.	113269990	113270470	0	1	480	0
chr13	113270072	113270453	H9_polyA+.20824	0	.	113270072	113270453	0	1	381	0
chr13	113270084	113270667	B_Cells_Pritchard.1594887	0	.	113270084	113270667	0	1	583	0
chr13	113270091	113270477	B_cells_Cheung.90492	0	.	113270091	113270477	0	1	386	0
chr13	113283600	113286021	B_Cells_Pritchard.1594945	0	.	113283600	113286021	0	1	2421	0
chr13	113283832	113286036	H1_polyA+.53287	0	.	113283832	113286036	0	1	2204	0
chr13	113284599	113286029	B_cells_Cheung.90500	0	.	113284599	113286029	0	1	1430	0
chr13	113285565	113286001	A549_Myers.35824	0	.	113285565	113286001	0	1	436	0
chr13	113285629	113285990	HeLa_polyA+_Chen.16456	0	.	113285629	113285990	0	1	361	0
chr13	113473995	113474414	REMC_LuminalBreast.46497	0	.	113473995	113474414	0	1	419	0
chr13	113473997	113474422	CD4_Plagnol_activated.28922	0	.	113473997	113474422	0	1	425	0
chr13	113474002	113477491	CD4_Plagnol_resting.28023	0	.	113474002	113477491	0	1	3489	0
chr13	113474002	113474472	melanoma_Garraway_short_term_cultures.30659	0	.	113474002	113474472	0	1	470	0
chr13	113474007	113475446	REMC_MyoepithelialBreast.43706	0	.	113474007	113475446	0	1	1439	0
chr13	113474027	113474431	prostate_carcinoma.45335	0	.	113474027	113474431	0	1	404	0
chr13	113474520	113483592	REMC_LuminalBreast.46498	0	.	113474520	113483592	0	1	9072	0
chr13	113474581	113475858	melanoma_Garraway_short_term_cultures.30660	0	.	113474581	113475858	0	1	1277	0
chr13	113475533	113475962	REMC_MyoepithelialBreast.43707	0	.	113475533	113475962	0	1	429	0
chr13	113475560	113477835	CD4_Plagnol_activated.28924	0	.	113475560	113477835	0	1	2275	0
chr13	113475813	113477444	prostate_carcinoma.45336	0	.	113475813	113477444	0	1	1631	0
chr13	113476023	113477820	melanoma_Garraway_short_term_cultures.30661	0	.	113476023	113477820	0	1	1797	0
chr13	113476116	113484400	REMC_MyoepithelialBreast.43708	0	.	113476116	113484400	0	1	8284	0
chr13	113476681	113484445	Rinn_00022133	0	+	113476681	113484445	0	2	5626,1955	0,5809
chr13	113477937	113484636	melanoma_Garraway_short_term_cultures.30662	0	.	113477937	113484636	0	1	6699	0
chr13	113478280	113484456	CD4_Plagnol_activated.28926	0	.	113478280	113484456	0	1	6176	0
chr13	113478398	113484671	CD4_Plagnol_resting.28024	0	.	113478398	113484671	0	1	6273	0
chr13	113478498	113484430	prostate_carcinoma.45337	0	.	113478498	113484430	0	1	5932	0
chr13	113480029	113481021	REMC_BreastStem.23645	0	.	113480029	113481021	0	1	992	0
chr13	113480174	113481561	prostate_normal.26459	0	.	113480174	113481561	0	1	1387	0
chr13	113480182	113484442	T47D_Burge_Thompson.12948	0	.	113480182	113484442	0	1	4260	0
chr13	113480594	113481156	B_Cells_Pritchard.1595125	0	.	113480594	113481156	0	1	562	0
chr13	113483327	113484522	prostate_normal.26461	0	.	113483327	113484522	0	1	1195	0
chr13	113484631	113485965	REMC_MyoepithelialBreast.43709	0	.	113484631	113485965	0	1	1334	0
chr13	113485006	113487188	REMC_BreastStem.23649	0	.	113485006	113487188	0	1	2182	0
chr13	113485399	113485825	CD4_Plagnol_resting.28025	0	.	113485399	113485825	0	1	426	0
chr13	113486043	113487923	REMC_MyoepithelialBreast.43710	0	.	113486043	113487923	0	1	1880	0
chr13	113486209	113488749	melanoma_Garraway_short_term_cultures.30663	0	.	113486209	113488749	0	1	2540	0
chr13	113486463	113487402	CD4_Plagnol_resting.28027	0	.	113486463	113487402	0	1	939	0
chr13	113486594	113487618	CD4_Plagnol_activated.28925	0	.	113486594	113487618	0	1	1024	0
chr13	113486594	113487771	REMC_LuminalBreast.46500	0	.	113486594	113487771	0	1	1177	0
chr13	113487456	113522695	HIT000045915	0	-	113487456	113522695	0	8	1737,130,198,220,224,108,153,158	0,2333,2592,3858,21498,24640,24834,35081
chr13	113487457	113527333	NR_024609	0	-	113487457	113527333	0	9	1737,130,198,220,224,108,153,131,27	0,2333,2592,3858,21498,24640,24834,35081,39849
chr13	113487822	113509035	HIT000262963	0	-	113487822	113509035	0	9	375,130,198,220,262,175,80,308,81	0,1967,2226,3492,4838,5447,6202,7043,21132
chr13	113488091	113509854	REMC_MyoepithelialBreast.43711	0	-	113488091	113509854	0	5	107,457,2970,390,899	0,1699,3044,6775,20864
chr13	113489600	113515866	HIT000093475	0	-	113489600	113515866	0	8	319,198,220,80,308,227,159,147	0,448,1714,4424,5265,19354,22684,26119
chr13	113489651	113515866	ENST00000426859	0	-	113489651	113515866	0	8	268,198,220,80,308,224,162,147	0,397,1663,4373,5214,19303,22630,26068
chr13	113506762	113508360	REMC_MyoepithelialBreast.43719	0	.	113506762	113508360	0	1	1598	0
chr13	113512082	113515346	REMC_MyoepithelialBreast.43712	0	.	113512082	113515346	0	1	3264	0
chr13	113523947	113524899	REMC_MyoepithelialBreast.43724	0	.	113523947	113524899	0	1	952	0
chr13	113527424	113527748	testes_Burge.23710	0	.	113527424	113527748	0	1	324	0
chr13	113527569	113529051	REMC_MyoepithelialBreast.43920	0	.	113527569	113529051	0	1	1482	0
chr13	113529934	113530331	testes_Burge.23712	0	.	113529934	113530331	0	1	397	0
chr13	113532667	113545952	B_Cells_Pritchard.1595323	0	-	113532667	113545952	0	2	1442,66	0,13219
chr13	113534836	113535532	B_cells_Cheung.90539	0	.	113534836	113535532	0	1	696	0
chr13	113592244	113592837	A549_Myers.35948	0	.	113592244	113592837	0	1	593	0
chr13	113593603	113595326	BT20_Thompson.9750	0	.	113593603	113595326	0	1	1723	0
chr13	113593699	113594527	melanoma_Garraway_short_term_cultures.30674	0	.	113593699	113594527	0	1	828	0
chr13	113593700	113595206	K562.20819	0	.	113593700	113595206	0	1	1506	0
chr13	113593791	113595619	REMC_MyoepithelialBreast.43931	0	.	113593791	113595619	0	1	1828	0
chr13	113593852	113594749	brain_AmbionMAQC.20001	0	.	113593852	113594749	0	1	897	0
chr13	113593951	113594729	MDAMB231_Thompson.10184	0	.	113593951	113594729	0	1	778	0
chr13	113593994	113594754	prostate_normal.26671	0	.	113593994	113594754	0	1	760	0
chr13	113594292	113594933	REMC_LuminalBreast.46519	0	.	113594292	113594933	0	1	641	0
chr13	113594370	113595054	lymph_node_Burge.21988	0	.	113594370	113595054	0	1	684	0
chr13	113595003	113595592	brain_AmbionMAQC.20000	0	.	113595003	113595592	0	1	589	0
chr13	113595707	113597160	prostate_normal.26673	0	.	113595707	113597160	0	1	1453	0
chr13	113596540	113597958	B_Cells_Pritchard.1595389	0	.	113596540	113597958	0	1	1418	0
chr13	113596775	113597824	MDAMB231_Thompson.10187	0	.	113596775	113597824	0	1	1049	0
chr13	113653225	113653811	prostate_normal.26496	0	.	113653225	113653811	0	1	586	0
chr13	113758059	113761681	CD4_Plagnol_resting.28045	0	.	113758059	113761681	0	1	3622	0
chr13	113758079	113759455	B_Cells_Pritchard.1595549	0	.	113758079	113759455	0	1	1376	0
chr13	113758227	113758997	prostate_carcinoma.45407	0	.	113758227	113758997	0	1	770	0
chr13	113758331	113759685	CD4_Plagnol_activated.28946	0	.	113758331	113759685	0	1	1354	0
chr13	113759863	113760284	CD4_Plagnol_activated.28944	0	.	113759863	113760284	0	1	421	0
chr13	113760192	113761524	REMC_LuminalBreast.46522	0	.	113760192	113761524	0	1	1332	0
chr13	113760434	113761534	CD4_Plagnol_activated.28945	0	.	113760434	113761534	0	1	1100	0
chr13	113760784	113761690	B_Cells_Pritchard.1595559	0	.	113760784	113761690	0	1	906	0
chr13	113761955	113763100	REMC_LuminalBreast.46523	0	.	113761955	113763100	0	1	1145	0
chr13	113762737	113763098	B_cells_Cheung.90557	0	.	113762737	113763098	0	1	361	0
chr13	113917502	113920672	melanoma_Garraway_short_term_cultures.30686	0	.	113917502	113920672	0	1	3170	0
chr13	113917591	113921224	REMC_BreastStem.23654	0	.	113917591	113921224	0	1	3633	0
chr13	113917619	113919877	CD4_Plagnol_resting.28046	0	.	113917619	113919877	0	1	2258	0
chr13	113918164	113918861	B_Cells_Pritchard.1595703	0	.	113918164	113918861	0	1	697	0
chr13	113919380	113920027	CD4_Plagnol_activated.28948	0	.	113919380	113920027	0	1	647	0
chr13	113924685	113925623	CD4_Plagnol_activated.28949	0	.	113924685	113925623	0	1	938	0
chr13	113925475	113926743	CD4_Snyder.35540	0	.	113925475	113926743	0	1	1268	0
chr13	113925616	113926087	CD4_Plagnol_resting.28047	0	.	113925616	113926087	0	1	471	0
chr13	113927775	113928226	B_Cells_Pritchard.1595743	0	.	113927775	113928226	0	1	451	0
chr13	113927810	113931706	pHIT000086827	0	+	113927810	113931706	0	2	117,750	0,3146
chr13	113929099	113930041	REMC_BreastStem.23668	0	.	113929099	113930041	0	1	942	0
chr13	113934717	113935406	CD4_Plagnol_resting.28049	0	.	113934717	113935406	0	1	689	0
chr13	113945369	113946409	B_Cells_Pritchard.1595797	0	.	113945369	113946409	0	1	1040	0
chr13	113945413	113945822	testes_Burge.23754	0	.	113945413	113945822	0	1	409	0
chr13	113996837	113997290	pHIT000023475	0	+	113996837	113997290	0	1	453	0
chr13	114003698	114004004	B_cells_Cheung.90598	0	.	114003698	114004004	0	1	306	0
chr13	114007842	114008182	A549_Myers.35949	0	.	114007842	114008182	0	1	340	0
chr13	114008690	114010276	H1_polyA+.53369	0	+	114008690	114010276	0	2	181,1305	0,281
chr13	114010385	114013833	H1_polyA+.53366	0	.	114010385	114013833	0	1	3448	0
chr13	114057252	114060574	H1_polyA+.53374	0	.	114057252	114060574	0	1	3322	0
chr13	114061230	114062012	B_Cells_Pritchard.1597825	0	+	114061230	114062012	0	1	782	0
chr13	114114277	114114951	B_cells_Cheung.90616	0	.	114114277	114114951	0	1	674	0
chr14	18541037	18541462	prostate_carcinoma.45492	0	.	18541037	18541462	0	1	425	0
chr14	18720065	18751593	ENST00000438128	0	+	18720065	18751593	0	2	61,999	0,30529
chr14	18723939	18751519	ENST00000427798	0	+	18723939	18751519	0	2	65,925	0,26655
chr14	18750788	18751127	HIT000487673_01	0	+	18750788	18751127	0	1	339	0
chr14	18924814	18926379	XR_036910	0	+	18924814	18926379	0	1	1565	0
chr14	18958561	18959057	K562.20855	0	.	18958561	18959057	0	1	496	0
chr14	18958586	18959023	REMC_MyoepithelialBreast.43801	0	.	18958586	18959023	0	1	437	0
chr14	18960034	18960465	REMC_MyoepithelialBreast.43802	0	.	18960034	18960465	0	1	431	0
chr14	18960034	18960427	HeLa_polyA+_Chen.16578	0	.	18960034	18960427	0	1	393	0
chr14	18960047	18960399	MCF7_Burge_Thompson.13594	0	.	18960047	18960399	0	1	352	0
chr14	18960059	18960395	MDAMB231_Thompson.10208	0	.	18960059	18960395	0	1	336	0
chr14	18960067	18960399	MDAMB468_Thompson.11179	0	.	18960067	18960399	0	1	332	0
chr14	19005904	19044840	ENST00000506748	0	-	19005904	19044840	0	6	476,262,66,3412,1313,297	0,8654,19975,32972,36912,38639
chr14	19226259	19229139	pHIT000113035	0	+	19226259	19229139	0	2	157,755	0,2125
chr14	19805289	19806955	H1_polyA+.53361	0	.	19805289	19806955	0	1	1666	0
chr14	19805289	19806974	REMC_LuminalBreast.46570	0	.	19805289	19806974	0	1	1685	0
chr14	19806322	19806979	REMC_MyoepithelialBreast.43811	0	.	19806322	19806979	0	1	657	0
chr14	19806572	19806937	BT474_Burge_Thompson.14952	0	.	19806572	19806937	0	1	365	0
chr14	19807969	19809317	prostate_normal.26572	0	.	19807969	19809317	0	1	1348	0
chr14	19808027	19808972	prostate_carcinoma.45624	0	.	19808027	19808972	0	1	945	0
chr14	19808281	19809419	REMC_MyoepithelialBreast.43812	0	.	19808281	19809419	0	1	1138	0
chr14	19808672	19809293	brain_AmbionMAQC.20036	0	.	19808672	19809293	0	1	621	0
chr14	19809049	19809864	prostate_carcinoma.45627	0	.	19809049	19809864	0	1	815	0
chr14	19809063	19809441	H9_polyA+.20905	0	.	19809063	19809441	0	1	378	0
chr14	19810356	19813549	REMC_LuminalBreast.46573	0	.	19810356	19813549	0	1	3193	0
chr14	19810666	19811304	REMC_MyoepithelialBreast.43814	0	.	19810666	19811304	0	1	638	0
chr14	19810776	19811438	B_Cells_Pritchard.1597369	0	.	19810776	19811438	0	1	662	0
chr14	19811220	19814392	H1_polyA+.53364	0	.	19811220	19814392	0	1	3172	0
chr14	19814488	19818547	H1_polyA+.53365	0	.	19814488	19818547	0	1	4059	0
chr14	19816132	19820904	H9_polyA+.20909	0	+	19816132	19820904	0	2	319,68	0,4704
chr14	19817884	19818564	REMC_MyoepithelialBreast.43818	0	.	19817884	19818564	0	1	680	0
chr14	19817935	19818522	HeLa_polyA+_Chen.16586	0	.	19817935	19818522	0	1	587	0
chr14	19898558	19899237	B_cells_Cheung.90909	0	.	19898558	19899237	0	1	679	0
chr14	19957635	19958148	B_cells_Cheung.90663	0	.	19957635	19958148	0	1	513	0
chr14	19975845	19979246	pHIT000023486	0	+	19975845	19979246	0	3	191,95,80	0,806,3321
chr14	19975845	19979847	pHIT000023488	0	+	19975845	19979847	0	4	191,95,152,117	0,806,1137,3885
chr14	20019476	20019940	CD4_Plagnol_resting.28127	0	.	20019476	20019940	0	1	464	0
chr14	20021812	20022973	REMC_MyoepithelialBreast.43895	0	.	20021812	20022973	0	1	1161	0
chr14	20021931	20022664	B_cells_Cheung.90716	0	.	20021931	20022664	0	1	733	0
chr14	20024615	20026350	REMC_MyoepithelialBreast.43897	0	.	20024615	20026350	0	1	1735	0
chr14	20025660	20026212	B_Cells_Pritchard.1599233	0	+	20025660	20026212	0	1	552	0
chr14	20032910	20034398	REMC_MyoepithelialBreast.43900	0	.	20032910	20034398	0	1	1488	0
chr14	20033358	20033882	B_Cells_Pritchard.1597985	0	.	20033358	20033882	0	1	524	0
chr14	20062252	20062943	B_Cells_Pritchard.1598081	0	.	20062252	20062943	0	1	691	0
chr14	20066417	20066959	pHIT000023500	0	-	20066417	20066959	0	2	300,183	0,359
chr14	20151189	20151615	REMC_MyoepithelialBreast.43877	0	.	20151189	20151615	0	1	426	0
chr14	20160722	20164603	B_Cells_Pritchard.1598281	0	-	20160722	20164603	0	3	77,1001,629	0,1367,3252
chr14	20162461	20163080	B_cells_Cheung.90725	0	.	20162461	20163080	0	1	619	0
chr14	20172044	20173085	B_cells_Cheung.90728	0	.	20172044	20173085	0	1	1041	0
chr14	20180876	20184557	B_Cells_Pritchard.1599989	0	-	20180876	20184557	0	1	3681	0
chr14	20193325	20205135	B_cells_Cheung.90739	0	.	20193325	20205135	0	1	11810	0
chr14	20193345	20204734	B_Cells_Pritchard.1599997	0	-	20193345	20204734	0	3	5583,1004,1427	0,8891,9962
chr14	20193392	20196072	H1_polyA+.53408	0	.	20193392	20196072	0	1	2680	0
chr14	20195227	20196080	HepG2_Caltech_ENCODE.16514	0	.	20195227	20196080	0	1	853	0
chr14	20195509	20195814	A549_Myers.36028	0	.	20195509	20195814	0	1	305	0
chr14	20201309	20201633	A549_Myers.36030	0	.	20201309	20201633	0	1	324	0
chr14	20205052	20205475	BT474_Burge_Thompson.14984	0	.	20205052	20205475	0	1	423	0
chr14	20205545	20205970	B_Cells_Pritchard.1600007	0	-	20205545	20205970	0	1	425	0
chr14	20219196	20219976	B_cells_Cheung.90752	0	.	20219196	20219976	0	1	780	0
chr14	20219196	20219689	prostate_normal.26608	0	.	20219196	20219689	0	1	493	0
chr14	20219269	20219895	B_Cells_Pritchard.1600065	0	-	20219269	20219895	0	1	626	0
chr14	20220003	20221992	B_Cells_Pritchard.1600067	0	-	20220003	20221992	0	1	1989	0
chr14	20220680	20221072	A549_Myers.36032	0	.	20220680	20221072	0	1	392	0
chr14	20241352	20244461	REMC_LuminalBreast.46628	0	.	20241352	20244461	0	1	3109	0
chr14	20241950	20243485	H1_polyA+.53417	0	.	20241950	20243485	0	1	1535	0
chr14	20242614	20244461	REMC_MyoepithelialBreast.43881	0	.	20242614	20244461	0	1	1847	0
chr14	20247540	20261179	REMC_LuminalBreast.46630	0	-	20247540	20261179	0	3	2177,113,2836	0,3539,10803
chr14	20256357	20261179	REMC_LuminalBreast.46631	0	.	20256357	20261179	0	1	4822	0
chr14	20259323	20260099	K562.20921	0	.	20259323	20260099	0	1	776	0
chr14	20259661	20261153	liver_polyA+.63219	0	+	20259661	20261153	0	2	184,157	0,1335
chr14	20259888	20261127	pHIT000023505	0	-	20259888	20261127	0	3	333,396,177	0,522,1062
chr14	20259888	20260806	pHIT000113050	0	-	20259888	20260806	0	2	333,396	0,522
chr14	20259888	20261127	pHIT000023510	0	-	20259888	20261127	0	3	207,396,177	0,522,1062
chr14	20259996	20261127	pHIT000113051	0	-	20259996	20261127	0	3	99,396,177	0,414,954
chr14	20260274	20261183	K562.20922	0	.	20260274	20261183	0	1	909	0
chr14	20260444	20260760	melanoma_Garraway_short_term_cultures.30760	0	.	20260444	20260760	0	1	316	0
chr14	20272576	20272978	pHIT000023511	0	+	20272576	20272978	0	1	402	0
chr14	20372063	20372695	REMC_BreastStem.23715	0	.	20372063	20372695	0	1	632	0
chr14	20410596	20412417	REMC_BreastStem.23717	0	.	20410596	20412417	0	1	1821	0
chr14	20430885	20435877	prostate_carcinoma.45607	0	-	20430885	20435877	0	2	1047,228	0,4764
chr14	20505838	20507004	REMC_LuminalBreast.46637	0	.	20505838	20507004	0	1	1166	0
chr14	20508889	20509743	REMC_BreastStem.23718	0	.	20508889	20509743	0	1	854	0
chr14	20509409	20509985	A549_Myers.36048	0	.	20509409	20509985	0	1	576	0
chr14	20510131	20511168	H1_polyA+.53425	0	.	20510131	20511168	0	1	1037	0
chr14	20520598	20522299	prostate_carcinoma.45661	0	.	20520598	20522299	0	1	1701	0
chr14	20520965	20521554	MIP101.31382	0	.	20520965	20521554	0	1	589	0
chr14	20520968	20522141	H1_polyA+.53427	0	.	20520968	20522141	0	1	1173	0
chr14	20521036	20521682	B_Cells_Pritchard.1599135	0	.	20521036	20521682	0	1	646	0
chr14	20521107	20521902	prostate_normal.26715	0	.	20521107	20521902	0	1	795	0
chr14	20552074	20553105	REMC_MyoepithelialBreast.43888	0	.	20552074	20553105	0	1	1031	0
chr14	20644273	20644647	B_Cells_Pritchard.1599539	0	.	20644273	20644647	0	1	374	0
chr14	20644994	20645372	A549_Myers.36102	0	.	20644994	20645372	0	1	378	0
chr14	20661211	20662301	REMC_MyoepithelialBreast.43902	0	.	20661211	20662301	0	1	1090	0
chr14	21392459	21393499	prostate_carcinoma.45688	0	.	21392459	21393499	0	1	1040	0
chr14	21392779	21393298	CD4_Plagnol_resting.28277	0	.	21392779	21393298	0	1	519	0
chr14	21400489	21402377	CD4_Plagnol_resting.28275	0	.	21400489	21402377	0	1	1888	0
chr14	21401369	21402202	CD4_Snyder.35784	0	.	21401369	21402202	0	1	833	0
chr14	21513086	21514474	CD4_Plagnol_activated.29235	0	.	21513086	21514474	0	1	1388	0
chr14	21517268	21517777	CD4_Snyder.35803	0	.	21517268	21517777	0	1	509	0
chr14	22094264	22098548	B_Cells_Pritchard.1602491	0	-	22094264	22098548	0	2	992,3023	0,1261
chr14	22095981	22096487	A549_Myers.36108	0	.	22095981	22096487	0	1	506	0
chr14	22100394	22101291	B_cells_Cheung.90922	0	.	22100394	22101291	0	1	897	0
chr14	22184068	22185300	BT20_Thompson.9823	0	.	22184068	22185300	0	1	1232	0
chr14	22190055	22190676	K562.20971	0	.	22190055	22190676	0	1	621	0
chr14	22190199	22190697	B_Cells_Pritchard.1602669	0	.	22190199	22190697	0	1	498	0
chr14	22264937	22265417	B_cells_Cheung.90939	0	.	22264937	22265417	0	1	480	0
chr14	22281092	22281999	B_cells_Cheung.90943	0	.	22281092	22281999	0	1	907	0
chr14	22281164	22282429	prostate_carcinoma.48858	0	.	22281164	22282429	0	1	1265	0
chr14	22287239	22288104	melanoma_Garraway_short_term_cultures.30875	0	.	22287239	22288104	0	1	865	0
chr14	22301560	22302855	H1_polyA+.53477	0	.	22301560	22302855	0	1	1295	0
chr14	22301567	22302792	B_Cells_Pritchard.1605739	0	+	22301567	22302792	0	1	1225	0
chr14	22388328	22388755	B_cells_Cheung.90982	0	.	22388328	22388755	0	1	427	0
chr14	22388468	22389320	REMC_LuminalBreast.46732	0	.	22388468	22389320	0	1	852	0
chr14	22389610	22391660	B_cells_Cheung.90984	0	.	22389610	22391660	0	1	2050	0
chr14	22389627	22391056	prostate_carcinoma.48881	0	.	22389627	22391056	0	1	1429	0
chr14	22391824	22392624	A549_Myers.36140	0	.	22391824	22392624	0	1	800	0
chr14	22391839	22393048	B_cells_Cheung.90985	0	.	22391839	22393048	0	1	1209	0
chr14	22400507	22401591	prostate_carcinoma.48884	0	.	22400507	22401591	0	1	1084	0
chr14	22400514	22401476	REMC_LuminalBreast.46734	0	.	22400514	22401476	0	1	962	0
chr14	22419869	22420615	T47D_Burge_Thompson.13099	0	.	22419869	22420615	0	1	746	0
chr14	22419871	22420713	MCF10A_Thompson.9980	0	.	22419871	22420713	0	1	842	0
chr14	22419904	22420538	H9_polyA+.21035	0	.	22419904	22420538	0	1	634	0
chr14	22419913	22420714	BT20_Thompson.9833	0	.	22419913	22420714	0	1	801	0
chr14	22419997	22420772	melanoma_Garraway_short_term_cultures.30892	0	.	22419997	22420772	0	1	775	0
chr14	22419998	22420643	MDAMB468_Thompson.11277	0	.	22419998	22420643	0	1	645	0
chr14	22419998	22420679	MCF7_Burge_Thompson.13772	0	.	22419998	22420679	0	1	681	0
chr14	22419999	22420615	brain_AmbionMAQC.20198	0	.	22419999	22420615	0	1	616	0
chr14	22420001	22420618	BT474_Burge_Thompson.15180	0	.	22420001	22420618	0	1	617	0
chr14	22420014	22420340	colon_Burge.17208	0	.	22420014	22420340	0	1	326	0
chr14	22420016	22420417	adipose_Burge.17546	0	.	22420016	22420417	0	1	401	0
chr14	22420020	22420621	MeWo_Garraway.16485	0	.	22420020	22420621	0	1	601	0
chr14	22420026	22420511	MeI_Garraway.8186	0	.	22420026	22420511	0	1	485	0
chr14	22420026	22420615	testes_Burge.23966	0	.	22420026	22420615	0	1	589	0
chr14	22420042	22420677	liver_polyA+.63458	0	.	22420042	22420677	0	1	635	0
chr14	22420074	22420677	kidney_Gilad.41052	0	.	22420074	22420677	0	1	603	0
chr14	22428676	22429936	REMC_MyoepithelialBreast.44207	0	.	22428676	22429936	0	1	1260	0
chr14	22428756	22430010	B_Cells_Pritchard.1606289	0	-	22428756	22430010	0	1	1254	0
chr14	22431330	22436003	B_Cells_Pritchard.1606301	0	-	22431330	22436003	0	3	2327,32,1321	0,3262,3352
chr14	22431367	22432046	REMC_MyoepithelialBreast.44208	0	.	22431367	22432046	0	1	679	0
chr14	22432227	22433589	CD4_Plagnol_activated.29323	0	.	22432227	22433589	0	1	1362	0
chr14	22434422	22435884	REMC_BreastStem.23809	0	.	22434422	22435884	0	1	1462	0
chr14	22471975	22473502	H1_polyA+.53494	0	.	22471975	22473502	0	1	1527	0
chr14	22472231	22473313	B_cells_Cheung.91509	0	.	22472231	22473313	0	1	1082	0
chr14	22472678	22473512	MIP101.31534	0	.	22472678	22473512	0	1	834	0
chr14	22480719	22481185	B_cells_Cheung.91518	0	.	22480719	22481185	0	1	466	0
chr14	22480738	22481097	prostate_carcinoma.48941	0	.	22480738	22481097	0	1	359	0
chr14	22521730	22523862	MCF7_Burge_Thompson.13708	0	+	22521730	22523862	0	3	400,87,162	0,825,1970
chr14	22521802	22523739	H9_polyA+.21050	0	+	22521802	22523739	0	3	328,87,39	0,753,1898
chr14	22659721	22661650	REMC_BreastStem.23835	0	.	22659721	22661650	0	1	1929	0
chr14	22661797	22662770	REMC_BreastStem.23836	0	.	22661797	22662770	0	1	973	0
chr14	22832900	22834775	HIT000013995	0	-	22832900	22834775	0	1	1875	0
chr14	22834555	22836965	REMC_MyoepithelialBreast.44013	0	.	22834555	22836965	0	1	2410	0
chr14	22834824	22835489	CD4_Snyder.35945	0	.	22834824	22835489	0	1	665	0
chr14	22834919	22835816	REMC_BreastStem.23841	0	.	22834919	22835816	0	1	897	0
chr14	22834962	22835498	liver_polyA+.63525	0	.	22834962	22835498	0	1	536	0
chr14	22834966	22835425	kidney_Gilad.41160	0	.	22834966	22835425	0	1	459	0
chr14	22835011	22836892	ZR751_Thompson.11048	0	.	22835011	22836892	0	1	1881	0
chr14	22835012	22835493	T47D_Burge_Thompson.13111	0	.	22835012	22835493	0	1	481	0
chr14	22835012	22835521	MDAMB231_Thompson.10320	0	.	22835012	22835521	0	1	509	0
chr14	22835017	22835502	NEC_from_H9.34828	0	.	22835017	22835502	0	1	485	0
chr14	22835632	22836985	CD4_Snyder.35946	0	.	22835632	22836985	0	1	1353	0
chr14	22835647	22837213	NEC_from_H9.34827	0	.	22835647	22837213	0	1	1566	0
chr14	22835653	22836301	lymph_node_Burge.22559	0	.	22835653	22836301	0	1	648	0
chr14	22893015	22894025	NEC_from_H9.34843	0	.	22893015	22894025	0	1	1010	0
chr14	23021083	23022614	REMC_BreastStem.23859	0	.	23021083	23022614	0	1	1531	0
chr14	23025084	23026013	REMC_BreastStem.23861	0	.	23025084	23026013	0	1	929	0
chr14	23025656	23028403	B_cells_Cheung.91112	0	.	23025656	23028403	0	1	2747	0
chr14	23028624	23029578	B_cells_Cheung.91113	0	.	23028624	23029578	0	1	954	0
chr14	23033032	23033910	B_Cells_Pritchard.1604371	0	+	23033032	23033910	0	1	878	0
chr14	23046518	23047639	B_cells_Cheung.91127	0	.	23046518	23047639	0	1	1121	0
chr14	23046569	23047243	B_Cells_Pritchard.1604429	0	.	23046569	23047243	0	1	674	0
chr14	23051242	23051606	HepG2_Caltech_ENCODE.16719	0	.	23051242	23051606	0	1	364	0
chr14	23051816	23052564	MIP101.31508	0	.	23051816	23052564	0	1	748	0
chr14	23051843	23052377	B_Cells_Pritchard.1604443	0	.	23051843	23052377	0	1	534	0
chr14	23051932	23052399	BT474_Burge_Thompson.15283	0	.	23051932	23052399	0	1	467	0
chr14	23052293	23052808	A549_Myers.36196	0	.	23052293	23052808	0	1	515	0
chr14	23143782	23148465	HepG2_Caltech_ENCODE.16744	0	.	23143782	23148465	0	1	4683	0
chr14	23143782	23148465	HepG2_Caltech_ENCODE.16743	0	-	23143782	23148465	0	2	689,2423	0,2260
chr14	23166098	23167363	B_cells_Cheung.91175	0	.	23166098	23167363	0	1	1265	0
chr14	23186692	23189194	BT474_Burge_Thompson.15205	0	.	23186692	23189194	0	1	2502	0
chr14	23187697	23188075	BT20_Thompson.10095	0	.	23187697	23188075	0	1	378	0
chr14	23191770	23192727	BT474_Burge_Thompson.15208	0	.	23191770	23192727	0	1	957	0
chr14	23192040	23192587	BT20_Thompson.10099	0	.	23192040	23192587	0	1	547	0
chr14	23231681	23237983	Rinn_00022429	0	+	23231681	23237983	0	2	714,2048	0,4254
chr14	23231681	23237983	Rinn_00022430	0	+	23231681	23237983	0	2	714,2079	0,4223
chr14	23233908	23237983	Rinn_00022431	0	+	23233908	23237983	0	2	6,2079	0,1996
chr14	23235544	23237337	MCF7_Burge_Thompson.13754	0	.	23235544	23237337	0	1	1793	0
chr14	23235618	23237848	H1_polyA+.53577	0	.	23235618	23237848	0	1	2230	0
chr14	23235660	23237982	BT474_Burge_Thompson.15188	0	.	23235660	23237982	0	1	2322	0
chr14	23235906	23237294	HepG2_Caltech_ENCODE.16698	0	.	23235906	23237294	0	1	1388	0
chr14	23236208	23236790	T47D_Burge_Thompson.13124	0	.	23236208	23236790	0	1	582	0
chr14	23236512	23237382	ZR751_Thompson.11066	0	.	23236512	23237382	0	1	870	0
chr14	23264163	23264665	testes_Burge.24070	0	.	23264163	23264665	0	1	502	0
chr14	23438048	23438448	prostate_carcinoma.45896	0	.	23438048	23438448	0	1	400	0
chr14	23783641	23785199	REMC_MyoepithelialBreast.44422	0	.	23783641	23785199	0	1	1558	0
chr14	23783919	23785250	REMC_LuminalBreast.47549	0	.	23783919	23785250	0	1	1331	0
chr14	23783949	23785205	B_cells_Cheung.116329	0	.	23783949	23785205	0	1	1256	0
chr14	23994279	24001468	REMC_LuminalBreast.46923	0	.	23994279	24001468	0	1	7189	0
chr14	24012838	24016357	REMC_LuminalBreast.46926	0	.	24012838	24016357	0	1	3519	0
chr14	24013170	24016314	REMC_BreastStem.23903	0	.	24013170	24016314	0	1	3144	0
chr14	24013206	24016327	REMC_MyoepithelialBreast.44086	0	.	24013206	24016327	0	1	3121	0
chr14	24013223	24016376	HepG2_Caltech_ENCODE.16751	0	.	24013223	24016376	0	1	3153	0
chr14	24013228	24016939	B_cells_Cheung.91326	0	.	24013228	24016939	0	1	3711	0
chr14	24013229	24016382	BT474_Burge_Thompson.15250	0	.	24013229	24016382	0	1	3153	0
chr14	24013235	24016365	H1_polyA+.53637	0	.	24013235	24016365	0	1	3130	0
chr14	24013256	24017927	B_Cells_Pritchard.1606413	0	.	24013256	24017927	0	1	4671	0
chr14	24013307	24016428	MIP101.31574	0	.	24013307	24016428	0	1	3121	0
chr14	24013420	24016238	T47D_Burge_Thompson.13195	0	.	24013420	24016238	0	1	2818	0
chr14	24013430	24016322	prostate_carcinoma.45983	0	.	24013430	24016322	0	1	2892	0
chr14	24013430	24015143	A549_Myers.36309	0	.	24013430	24015143	0	1	1713	0
chr14	24013570	24015597	prostate_normal.26882	0	.	24013570	24015597	0	1	2027	0
chr14	24013581	24016337	melanoma_Garraway_short_term_cultures.31049	0	.	24013581	24016337	0	1	2756	0
chr14	24013605	24015813	ZR751_Thompson.11105	0	.	24013605	24015813	0	1	2208	0
chr14	24014261	24014870	CD4_Plagnol_activated.29470	0	.	24014261	24014870	0	1	609	0
chr14	24014489	24015096	NEC_from_H9.35064	0	.	24014489	24015096	0	1	607	0
chr14	24014522	24015100	liver_polyA+.63701	0	.	24014522	24015100	0	1	578	0
chr14	24015028	24015606	CD4_Plagnol_resting.28606	0	.	24015028	24015606	0	1	578	0
chr14	24015030	24015487	H9_polyA+.21165	0	.	24015030	24015487	0	1	457	0
chr14	24015062	24016118	MeWo_Garraway.16612	0	.	24015062	24016118	0	1	1056	0
chr14	24015149	24016260	MCF10A_Thompson.10065	0	.	24015149	24016260	0	1	1111	0
chr14	24015151	24015508	kidney_Gilad.41360	0	.	24015151	24015508	0	1	357	0
chr14	24015151	24015508	liver_polyA+.63702	0	.	24015151	24015508	0	1	357	0
chr14	24018939	24020064	REMC_LuminalBreast.46873	0	.	24018939	24020064	0	1	1125	0
chr14	24020979	24022779	REMC_LuminalBreast.46874	0	.	24020979	24022779	0	1	1800	0
chr14	24021978	24022614	B_Cells_Pritchard.1606427	0	.	24021978	24022614	0	1	636	0
chr14	24039435	24040510	REMC_LuminalBreast.46876	0	.	24039435	24040510	0	1	1075	0
chr14	24040288	24042683	prostate_carcinoma.45985	0	.	24040288	24042683	0	1	2395	0
chr14	24040602	24042689	prostate_normal.26884	0	.	24040602	24042689	0	1	2087	0
chr14	24040604	24042685	MIP101.31576	0	.	24040604	24042685	0	1	2081	0
chr14	24040605	24042705	H1_polyA+.53638	0	.	24040605	24042705	0	1	2100	0
chr14	24040605	24042695	REMC_LuminalBreast.46877	0	.	24040605	24042695	0	1	2090	0
chr14	24040606	24042421	B_cells_Cheung.91330	0	.	24040606	24042421	0	1	1815	0
chr14	24040618	24042388	MCF7_Burge_Thompson.13796	0	.	24040618	24042388	0	1	1770	0
chr14	24040619	24042601	BT474_Burge_Thompson.15251	0	.	24040619	24042601	0	1	1982	0
chr14	24040897	24041859	ZR751_Thompson.11108	0	.	24040897	24041859	0	1	962	0
chr14	24041120	24042376	BT20_Thompson.9913	0	.	24041120	24042376	0	1	1256	0
chr14	24041825	24042277	K562.21134	0	.	24041825	24042277	0	1	452	0
chr14	24181986	24184597	melanoma_Garraway_short_term_cultures.31053	0	.	24181986	24184597	0	1	2611	0
chr14	24182291	24183507	B_cells_Cheung.91341	0	.	24182291	24183507	0	1	1216	0
chr14	24182303	24185448	MeWo_Garraway.16634	0	.	24182303	24185448	0	1	3145	0
chr14	24182320	24183895	REMC_LuminalBreast.46883	0	.	24182320	24183895	0	1	1575	0
chr14	24182333	24183814	HeLa_polyA+_Chen.16865	0	.	24182333	24183814	0	1	1481	0
chr14	24182392	24183522	MIP101.31586	0	.	24182392	24183522	0	1	1130	0
chr14	24182396	24184283	MeI_Garraway.8279	0	.	24182396	24184283	0	1	1887	0
chr14	24182555	24183368	MB435_Burge.19334	0	.	24182555	24183368	0	1	813	0
chr14	24182581	24183909	B_Cells_Pritchard.1606899	0	.	24182581	24183909	0	1	1328	0
chr14	24182831	24183553	BT474_Burge_Thompson.15235	0	.	24182831	24183553	0	1	722	0
chr14	24186481	24187278	HeLa_polyA+_Chen.16868	0	.	24186481	24187278	0	1	797	0
chr14	24187694	24188324	HeLa_polyA+_Chen.16869	0	.	24187694	24188324	0	1	630	0
chr14	24187735	24188142	melanoma_Garraway_short_term_cultures.31065	0	.	24187735	24188142	0	1	407	0
chr14	24188250	24193830	melanoma_Garraway_short_term_cultures.31066	0	.	24188250	24193830	0	1	5580	0
chr14	24191263	24192323	HeLa_polyA+_Chen.16871	0	.	24191263	24192323	0	1	1060	0
chr14	24195971	24196515	NEC_from_H9.35070	0	.	24195971	24196515	0	1	544	0
chr14	24212693	24213509	B_Cells_Pritchard.1606961	0	.	24212693	24213509	0	1	816	0
chr14	24234159	24234739	CD4_Plagnol_activated.29477	0	.	24234159	24234739	0	1	580	0
chr14	24235443	24235891	BT474_Burge_Thompson.15238	0	.	24235443	24235891	0	1	448	0
chr14	24236148	24236752	BT474_Burge_Thompson.15239	0	.	24236148	24236752	0	1	604	0
chr14	24318986	24320080	REMC_MyoepithelialBreast.44087	0	.	24318986	24320080	0	1	1094	0
chr14	24319734	24320847	H1_polyA+.53643	0	.	24319734	24320847	0	1	1113	0
chr14	26270120	26345865	MCF7_Burge_Thompson.13800	0	+	26270120	26345865	0	5	82,85,137,117,584	0,48720,49407,66839,75161
chr14	26460912	26461893	melanoma_Garraway_short_term_cultures.31102	0	.	26460912	26461893	0	1	981	0
chr14	26861045	27212265	HIT000435660	0	-	26861045	27212265	0	3	142,165,191	0,334338,351029
chr14	26915845	26916937	melanoma_Garraway_short_term_cultures.31110	0	.	26915845	26916937	0	1	1092	0
chr14	27045239	27046112	H9_polyA-_Chen.6737	0	.	27045239	27046112	0	1	873	0
chr14	27060385	27062053	H1_polyA+.53655	0	.	27060385	27062053	0	1	1668	0
chr14	27066137	27069234	H1_polyA+.53657	0	.	27066137	27069234	0	1	3097	0
chr14	27166406	27167169	H9_polyA-_Chen.6755	0	.	27166406	27167169	0	1	763	0
chr14	27168864	27169245	H1_rRNA-depleted_UCSD_REMC.42150	0	.	27168864	27169245	0	1	381	0
chr14	27384364	27385080	T47D_Burge_Thompson.13210	0	.	27384364	27385080	0	1	716	0
chr14	27385217	27385534	K562.21175	0	.	27385217	27385534	0	1	317	0
chr14	28381822	28382396	K562.21187	0	.	28381822	28382396	0	1	574	0
chr14	28393640	28394398	K562.21188	0	.	28393640	28394398	0	1	758	0
chr14	28393771	28394654	BT20_Thompson.9922	0	.	28393771	28394654	0	1	883	0
chr14	28393787	28394620	B_Cells_Pritchard.1614179	0	.	28393787	28394620	0	1	833	0
chr14	28393790	28394398	melanoma_Garraway_short_term_cultures.31124	0	.	28393790	28394398	0	1	608	0
chr14	28393790	28394743	T47D_Burge_Thompson.13213	0	.	28393790	28394743	0	1	953	0
chr14	28507056	28507688	K562.21198	0	.	28507056	28507688	0	1	632	0
chr14	28567644	28568902	T47D_Burge_Thompson.13218	0	.	28567644	28568902	0	1	1258	0
chr14	28567871	28568777	BT20_Thompson.9918	0	.	28567871	28568777	0	1	906	0
chr14	28567871	28568289	B_cells_Cheung.91397	0	.	28567871	28568289	0	1	418	0
chr14	28567871	28568786	melanoma_Garraway_short_term_cultures.31127	0	.	28567871	28568786	0	1	915	0
chr14	28567951	28568731	B_Cells_Pritchard.1614613	0	.	28567951	28568731	0	1	780	0
chr14	29927561	29930316	K562.21224	0	.	29927561	29930316	0	1	2755	0
chr14	29936943	29943405	K562.21230	0	.	29936943	29943405	0	1	6462	0
chr14	29937072	29938349	T47D_Burge_Thompson.13219	0	.	29937072	29938349	0	1	1277	0
chr14	29940628	29943457	T47D_Burge_Thompson.13220	0	.	29940628	29943457	0	1	2829	0
chr14	29943930	29944416	T47D_Burge_Thompson.13222	0	.	29943930	29944416	0	1	486	0
chr14	29946394	29947663	K562.21228	0	.	29946394	29947663	0	1	1269	0
chr14	29947807	29951562	K562.21229	0	.	29947807	29951562	0	1	3755	0
chr14	29948397	29949888	T47D_Burge_Thompson.13230	0	.	29948397	29949888	0	1	1491	0
chr14	29948398	29948848	H1_polyA+.53668	0	.	29948398	29948848	0	1	450	0
chr14	30293949	30294378	A549_Myers.36377	0	.	30293949	30294378	0	1	429	0
chr14	30747939	30748428	B_cells_Cheung.91603	0	.	30747939	30748428	0	1	489	0
chr14	30962783	30966840	H1_polyA+.53840	0	.	30962783	30966840	0	1	4057	0
chr14	30969100	30969929	B_Cells_Pritchard.1619361	0	.	30969100	30969929	0	1	829	0
chr14	30970557	30971574	H1_polyA+.53842	0	.	30970557	30971574	0	1	1017	0
chr14	30970668	30971642	B_cells_Cheung.91673	0	.	30970668	30971642	0	1	974	0
chr14	30971844	30972548	B_cells_Cheung.91674	0	.	30971844	30972548	0	1	704	0
chr14	30971893	30972588	B_Cells_Pritchard.1619365	0	.	30971893	30972588	0	1	695	0
chr14	30973999	30975010	brain_AmbionMAQC.20420	0	.	30973999	30975010	0	1	1011	0
chr14	31403688	31404011	B_cells_Cheung.91715	0	.	31403688	31404011	0	1	323	0
chr14	31483334	31489338	MIP101.31733	0	+	31483334	31489338	0	2	731,293	0,5711
chr14	31483389	31491790	HepG2_Caltech_ENCODE.16856	0	+	31483389	31491790	0	3	676,295,57	0,5656,8344
chr14	31483436	31484118	A549_Myers.36433	0	.	31483436	31484118	0	1	682	0
chr14	31513962	31514374	BT474_Burge_Thompson.15305	0	.	31513962	31514374	0	1	412	0
chr14	31523613	31524279	B_Cells_Pritchard.1621343	0	.	31523613	31524279	0	1	666	0
chr14	31543849	31544390	MIP101.31734	0	.	31543849	31544390	0	1	541	0
chr14	31567679	31568964	MIP101.31735	0	.	31567679	31568964	0	1	1285	0
chr14	31699998	31701542	B_Cells_Pritchard.1621751	0	.	31699998	31701542	0	1	1544	0
chr14	31699999	31701159	B_cells_Cheung.91791	0	.	31699999	31701159	0	1	1160	0
chr14	31724100	31725434	REMC_MyoepithelialBreast.44283	0	.	31724100	31725434	0	1	1334	0
chr14	31742288	31811210	pHIT000023896	0	-	31742288	31811210	0	5	138,77,223,101,395	0,18949,48697,52449,68527
chr14	31742288	31824584	pHIT000087339	0	-	31742288	31824584	0	6	138,77,223,101,395,51	0,18949,48697,52449,68527,82245
chr14	31802286	31802652	B_cells_Cheung.91796	0	.	31802286	31802652	0	1	366	0
chr14	31810828	31811261	K562.21265	0	.	31810828	31811261	0	1	433	0
chr14	32418202	32421787	HIT000046554	0	+	32418202	32421787	0	1	3585	0
chr14	32472318	32472730	colon_Burge.17522	0	.	32472318	32472730	0	1	412	0
chr14	33377417	33449611	pHIT000113228	0	+	33377417	33449611	0	6	65,133,115,136,57,58	0,7215,9586,13894,14976,72136
chr14	33377417	33387118	pHIT000113226	0	+	33377417	33387118	0	3	65,133,115	0,7215,9586
chr14	33436315	33437690	REMC_MyoepithelialBreast.44356	0	.	33436315	33437690	0	1	1375	0
chr14	33438817	33439918	REMC_MyoepithelialBreast.44357	0	.	33438817	33439918	0	1	1101	0
chr14	33440488	33441538	BT474_Burge_Thompson.15326	0	.	33440488	33441538	0	1	1050	0
chr14	33453722	33454705	B_Cells_Pritchard.1625631	0	.	33453722	33454705	0	1	983	0
chr14	33453831	33454948	REMC_MyoepithelialBreast.44359	0	.	33453831	33454948	0	1	1117	0
chr14	33455888	33458014	REMC_MyoepithelialBreast.44360	0	.	33455888	33458014	0	1	2126	0
chr14	33460294	33460966	HepG2_Caltech_ENCODE.16892	0	.	33460294	33460966	0	1	672	0
chr14	33744775	33745098	BT474_Burge_Thompson.15328	0	.	33744775	33745098	0	1	323	0
chr14	33898583	33899424	REMC_LuminalBreast.47048	0	.	33898583	33899424	0	1	841	0
chr14	33907816	33909992	REMC_LuminalBreast.47053	0	.	33907816	33909992	0	1	2176	0
chr14	33911289	33918020	REMC_LuminalBreast.47054	0	.	33911289	33918020	0	1	6731	0
chr14	33940141	33940689	REMC_LuminalBreast.47064	0	.	33940141	33940689	0	1	548	0
chr14	33942099	33946022	REMC_LuminalBreast.47065	0	.	33942099	33946022	0	1	3923	0
chr14	33944654	33945467	REMC_MyoepithelialBreast.44375	0	.	33944654	33945467	0	1	813	0
chr14	33958378	33966410	REMC_LuminalBreast.47070	0	.	33958378	33966410	0	1	8032	0
chr14	34086768	34094238	REMC_MyoepithelialBreast.44389	0	.	34086768	34094238	0	1	7470	0
chr14	34086778	34094240	REMC_LuminalBreast.47101	0	.	34086778	34094240	0	1	7462	0
chr14	34086807	34094170	REMC_BreastStem.24042	0	.	34086807	34094170	0	1	7363	0
chr14	34089693	34091200	B_cells_Cheung.92009	0	.	34089693	34091200	0	1	1507	0
chr14	34090414	34091149	melanoma_Garraway_short_term_cultures.31338	0	.	34090414	34091149	0	1	735	0
chr14	34199208	34200826	REMC_LuminalBreast.47111	0	.	34199208	34200826	0	1	1618	0
chr14	34203362	34205930	REMC_LuminalBreast.47112	0	.	34203362	34205930	0	1	2568	0
chr14	34210253	34212067	REMC_LuminalBreast.47114	0	.	34210253	34212067	0	1	1814	0
chr14	34224696	34226029	REMC_LuminalBreast.47121	0	.	34224696	34226029	0	1	1333	0
chr14	34229950	34231910	REMC_LuminalBreast.47123	0	.	34229950	34231910	0	1	1960	0
chr14	34230034	34231249	REMC_MyoepithelialBreast.44402	0	.	34230034	34231249	0	1	1215	0
chr14	34235005	34238243	REMC_LuminalBreast.47126	0	.	34235005	34238243	0	1	3238	0
chr14	34236188	34237986	REMC_MyoepithelialBreast.44406	0	.	34236188	34237986	0	1	1798	0
chr14	34245549	34246169	REMC_MyoepithelialBreast.44409	0	.	34245549	34246169	0	1	620	0
chr14	34245554	34246170	B_cells_Cheung.92070	0	.	34245554	34246170	0	1	616	0
chr14	34273058	34274459	REMC_MyoepithelialBreast.44448	0	.	34273058	34274459	0	1	1401	0
chr14	34273362	34274138	BT474_Burge_Thompson.15339	0	.	34273362	34274138	0	1	776	0
chr14	34273747	34274202	B_cells_Cheung.92077	0	.	34273747	34274202	0	1	455	0
chr14	34283830	34285432	REMC_MyoepithelialBreast.44451	0	.	34283830	34285432	0	1	1602	0
chr14	34284559	34284970	BT474_Burge_Thompson.15340	0	.	34284559	34284970	0	1	411	0
chr14	34453750	34454802	HepG2_Caltech_ENCODE.16932	0	.	34453750	34454802	0	1	1052	0
chr14	34453829	34455094	B_cells_Cheung.92932	0	.	34453829	34455094	0	1	1265	0
chr14	34459200	34460224	B_cells_Cheung.92936	0	.	34459200	34460224	0	1	1024	0
chr14	34459352	34460003	CD4_Plagnol_resting.28784	0	.	34459352	34460003	0	1	651	0
chr14	34459365	34459958	prostate_carcinoma.46512	0	.	34459365	34459958	0	1	593	0
chr14	34481813	34482604	H1_polyA+.53991	0	.	34481813	34482604	0	1	791	0
chr14	34481849	34482917	B_cells_Cheung.92952	0	.	34481849	34482917	0	1	1068	0
chr14	34483113	34489618	B_cells_Cheung.92953	0	.	34483113	34489618	0	1	6505	0
chr14	34483705	34486148	H1_polyA+.53992	0	.	34483705	34486148	0	1	2443	0
chr14	34488837	34489582	H1_polyA+.53995	0	.	34488837	34489582	0	1	745	0
chr14	34492436	34493010	B_Cells_Pritchard.1646685	0	+	34492436	34493010	0	1	574	0
chr14	34570015	34573400	REMC_BreastStem.24065	0	.	34570015	34573400	0	1	3385	0
chr14	34570077	34574583	REMC_MyoepithelialBreast.44443	0	.	34570077	34574583	0	1	4506	0
chr14	34574713	34575796	REMC_BreastStem.24068	0	.	34574713	34575796	0	1	1083	0
chr14	34574713	34576446	REMC_LuminalBreast.47219	0	.	34574713	34576446	0	1	1733	0
chr14	34580123	34581040	prostate_carcinoma.46549	0	.	34580123	34581040	0	1	917	0
chr14	34814512	34815808	MDAMB231_Thompson.10458	0	.	34814512	34815808	0	1	1296	0
chr14	34814829	34816512	HeLa_polyA+_Chen.16961	0	.	34814829	34816512	0	1	1683	0
chr14	34815175	34816017	MDAMB468_Thompson.11457	0	.	34815175	34816017	0	1	842	0
chr14	34815218	34816970	K562.21361	0	.	34815218	34816970	0	1	1752	0
chr14	34815230	34816866	brain_AmbionMAQC.20538	0	.	34815230	34816866	0	1	1636	0
chr14	34815233	34816776	ZR751_Thompson.11199	0	.	34815233	34816776	0	1	1543	0
chr14	34815236	34817271	prostate_carcinoma.46366	0	.	34815236	34817271	0	1	2035	0
chr14	34815243	34815898	REMC_BreastStem.24084	0	.	34815243	34815898	0	1	655	0
chr14	34815248	34815639	BT20_Thompson.9996	0	.	34815248	34815639	0	1	391	0
chr14	34815251	34816042	NEC_from_H9.35366	0	.	34815251	34816042	0	1	791	0
chr14	34815251	34816209	NEC_from_H9.35365	0	-	34815251	34816209	0	2	772,70	0,888
chr14	34815251	34817130	liver_polyA+.64315	0	.	34815251	34817130	0	1	1879	0
chr14	34815252	34815941	CD4_Snyder.36531	0	.	34815252	34815941	0	1	689	0
chr14	34819005	34830170	REMC_LuminalBreast.47384	0	.	34819005	34830170	0	1	11165	0
chr14	34819041	34821746	REMC_MyoepithelialBreast.44551	0	.	34819041	34821746	0	1	2705	0
chr14	34820756	34821902	B_cells_Cheung.92219	0	.	34820756	34821902	0	1	1146	0
chr14	34821958	34826075	B_cells_Cheung.92220	0	.	34821958	34826075	0	1	4117	0
chr14	34822244	34826844	REMC_MyoepithelialBreast.44552	0	.	34822244	34826844	0	1	4600	0
chr14	34822880	34823903	HepG2_Caltech_ENCODE.16980	0	.	34822880	34823903	0	1	1023	0
chr14	34823087	34823753	prostate_carcinoma.46370	0	.	34823087	34823753	0	1	666	0
chr14	34863822	34865425	REMC_LuminalBreast.47390	0	.	34863822	34865425	0	1	1603	0
chr14	34864094	34865428	REMC_MyoepithelialBreast.44454	0	.	34864094	34865428	0	1	1334	0
chr14	34865063	34865427	B_cells_Cheung.92259	0	.	34865063	34865427	0	1	364	0
chr14	34872222	34873382	REMC_LuminalBreast.47248	0	.	34872222	34873382	0	1	1160	0
chr14	34872787	34873419	A549_Myers.36558	0	.	34872787	34873419	0	1	632	0
chr14	34876117	34877107	A549_Myers.36561	0	.	34876117	34877107	0	1	990	0
chr14	34876366	34876867	HeLa_polyA-_Chen.9086	0	.	34876366	34876867	0	1	501	0
chr14	34876407	34876829	B_Cells_Pritchard.1628551	0	.	34876407	34876829	0	1	422	0
chr14	34877665	34879059	REMC_LuminalBreast.47250	0	.	34877665	34879059	0	1	1394	0
chr14	34880201	34880574	A549_Myers.36562	0	.	34880201	34880574	0	1	373	0
chr14	34880775	34881420	prostate_carcinoma.46377	0	.	34880775	34881420	0	1	645	0
chr14	34882447	34884494	REMC_LuminalBreast.47252	0	.	34882447	34884494	0	1	2047	0
chr14	34885790	34886268	liver_polyA+.64339	0	.	34885790	34886268	0	1	478	0
chr14	34885798	34898088	prostate_carcinoma.46379	0	-	34885798	34898088	0	3	7,1419,18	0,4858,12272
chr14	34886274	34886726	B_Cells_Pritchard.1628589	0	.	34886274	34886726	0	1	452	0
chr14	34886451	34886919	liver_polyA+.64338	0	.	34886451	34886919	0	1	468	0
chr14	34888251	34889599	prostate_carcinoma.46380	0	.	34888251	34889599	0	1	1348	0
chr14	34888520	34889505	REMC_LuminalBreast.47253	0	.	34888520	34889505	0	1	985	0
chr14	34888793	34889512	liver_polyA+.64342	0	.	34888793	34889512	0	1	719	0
chr14	34888798	34889638	REMC_BreastStem.24092	0	.	34888798	34889638	0	1	840	0
chr14	34888854	34889398	prostate_normal.27095	0	.	34888854	34889398	0	1	544	0
chr14	34889893	34892631	liver_polyA+.64343	0	-	34889893	34892631	0	2	191,2040	0,698
chr14	34890324	34893145	prostate_carcinoma.46378	0	.	34890324	34893145	0	1	2821	0
chr14	34890345	34891340	REMC_LuminalBreast.47254	0	.	34890345	34891340	0	1	995	0
chr14	34890640	34891596	prostate_normal.27096	0	.	34890640	34891596	0	1	956	0
chr14	34891014	34891748	REMC_BreastStem.24093	0	.	34891014	34891748	0	1	734	0
chr14	34891503	34892603	REMC_MyoepithelialBreast.44459	0	.	34891503	34892603	0	1	1100	0
chr14	34891517	34892201	BT474_Burge_Thompson.15366	0	.	34891517	34892201	0	1	684	0
chr14	34891680	34892619	prostate_normal.27097	0	.	34891680	34892619	0	1	939	0
chr14	34896695	34898326	REMC_LuminalBreast.47256	0	.	34896695	34898326	0	1	1631	0
chr14	34896866	34898135	REMC_MyoepithelialBreast.44461	0	.	34896866	34898135	0	1	1269	0
chr14	34901224	34901922	B_Cells_Pritchard.1633929	0	+	34901224	34901922	0	1	698	0
chr14	34902725	34903773	REMC_MyoepithelialBreast.44462	0	.	34902725	34903773	0	1	1048	0
chr14	34902772	34903577	REMC_BreastStem.24097	0	.	34902772	34903577	0	1	805	0
chr14	34904105	34908616	REMC_BreastStem.24098	0	.	34904105	34908616	0	1	4511	0
chr14	34905012	34906195	REMC_MyoepithelialBreast.44463	0	.	34905012	34906195	0	1	1183	0
chr14	34905919	34906640	A549_Myers.36569	0	.	34905919	34906640	0	1	721	0
chr14	34906407	34907029	REMC_MyoepithelialBreast.44464	0	.	34906407	34907029	0	1	622	0
chr14	34907079	34909468	REMC_MyoepithelialBreast.44465	0	.	34907079	34909468	0	1	2389	0
chr14	34907147	34909054	REMC_LuminalBreast.47258	0	.	34907147	34909054	0	1	1907	0
chr14	34918938	34920868	REMC_BreastStem.24101	0	.	34918938	34920868	0	1	1930	0
chr14	34919783	34920905	REMC_LuminalBreast.47264	0	.	34919783	34920905	0	1	1122	0
chr14	34921842	34923256	REMC_MyoepithelialBreast.44472	0	.	34921842	34923256	0	1	1414	0
chr14	34922694	34923468	A549_Myers.36579	0	.	34922694	34923468	0	1	774	0
chr14	34933113	34933542	liver_polyA+.64345	0	.	34933113	34933542	0	1	429	0
chr14	34934546	34935306	B_cells_Cheung.92268	0	.	34934546	34935306	0	1	760	0
chr14	34946347	34946728	CD4_Plagnol_resting.28889	0	.	34946347	34946728	0	1	381	0
chr14	34946720	34969701	B_Cells_Pritchard.1628757	0	-	34946720	34969701	0	3	366,855,956	0,9779,22025
chr14	34958602	34959398	melanoma_Garraway_short_term_cultures.31457	0	.	34958602	34959398	0	1	796	0
chr14	34961804	34969484	H9_polyA+.21303	0	+	34961804	34969484	0	2	51,635	0,7045
chr14	34968709	34969549	K562.21315	0	.	34968709	34969549	0	1	840	0
chr14	34968755	34969282	B_cells_Cheung.92277	0	.	34968755	34969282	0	1	527	0
chr14	34968883	34969506	HepG2_Caltech_ENCODE.16984	0	.	34968883	34969506	0	1	623	0
chr14	34968945	34969581	H1_polyA+.54096	0	.	34968945	34969581	0	1	636	0
chr14	34984439	34985000	brain_AmbionMAQC.20542	0	.	34984439	34985000	0	1	561	0
chr14	35355060	35358043	REMC_LuminalBreast.47482	0	.	35355060	35358043	0	1	2983	0
chr14	35358165	35360528	REMC_LuminalBreast.47483	0	.	35358165	35360528	0	1	2363	0
chr14	35358379	35359217	MCF7_Burge_Thompson.13939	0	.	35358379	35359217	0	1	838	0
chr14	35358616	35362847	B_Cells_Pritchard.1630037	0	-	35358616	35362847	0	2	682,861	0,3370
chr14	35358639	35359609	B_cells_Cheung.92463	0	.	35358639	35359609	0	1	970	0
chr14	35358729	35359236	melanoma_Garraway_short_term_cultures.31474	0	.	35358729	35359236	0	1	507	0
chr14	35413717	35416639	REMC_LuminalBreast.47490	0	.	35413717	35416639	0	1	2922	0
chr14	35413726	35416631	REMC_MyoepithelialBreast.44668	0	.	35413726	35416631	0	1	2905	0
chr14	35414176	35416445	REMC_BreastStem.24174	0	.	35414176	35416445	0	1	2269	0
chr14	35414609	35415360	melanoma_Garraway_short_term_cultures.31481	0	.	35414609	35415360	0	1	751	0
chr14	35414735	35415383	B_Cells_Pritchard.1630265	0	+	35414735	35415383	0	1	648	0
chr14	35414874	35415362	B_cells_Cheung.92474	0	.	35414874	35415362	0	1	488	0
chr14	35415784	35420849	B_Cells_Pritchard.1630273	0	+	35415784	35420849	0	2	69,913	0,4152
chr14	35416748	35421165	REMC_MyoepithelialBreast.44669	0	.	35416748	35421165	0	1	4417	0
chr14	35416749	35421006	REMC_LuminalBreast.47491	0	.	35416749	35421006	0	1	4257	0
chr14	35419724	35420659	REMC_BreastStem.24175	0	.	35419724	35420659	0	1	935	0
chr14	35419748	35420579	H1_polyA+.54179	0	.	35419748	35420579	0	1	831	0
chr14	35419898	35424135	B_Cells_Pritchard.1630271	0	-	35419898	35424135	0	3	180,338,50	0,240,4187
chr14	35419913	35420540	K562.21357	0	.	35419913	35420540	0	1	627	0
chr14	35419925	35420537	B_cells_Cheung.92476	0	.	35419925	35420537	0	1	612	0
chr14	35420044	35420440	pHIT000023928	0	+	35420044	35420440	0	1	396	0
chr14	35424479	35431549	REMC_LuminalBreast.47492	0	.	35424479	35431549	0	1	7070	0
chr14	35428927	35429295	B_cells_Cheung.92480	0	.	35428927	35429295	0	1	368	0
chr14	35437036	35440705	REMC_LuminalBreast.47496	0	.	35437036	35440705	0	1	3669	0
chr14	35459714	35461406	REMC_LuminalBreast.47503	0	.	35459714	35461406	0	1	1692	0
chr14	35460516	35461362	melanoma_Garraway_short_term_cultures.31487	0	.	35460516	35461362	0	1	846	0
chr14	35460646	35461122	REMC_MyoepithelialBreast.44685	0	.	35460646	35461122	0	1	476	0
chr14	35585146	35606919	melanoma_Garraway_short_term_cultures.31488	0	-	35585146	35606919	0	4	1755,243,581,975	0,2540,14393,20798
chr14	35834888	35835503	B_Cells_Pritchard.1631255	0	.	35834888	35835503	0	1	615	0
chr14	35867718	35869594	MIP101.31957	0	.	35867718	35869594	0	1	1876	0
chr14	36064272	36064830	A549_Myers.36615	0	.	36064272	36064830	0	1	558	0
chr14	36184883	36186418	MCF7_Burge_Thompson.13948	0	.	36184883	36186418	0	1	1535	0
chr14	36185927	36186236	A549_Myers.36619	0	.	36185927	36186236	0	1	309	0
chr14	36192952	36194935	prostate_carcinoma.46453	0	.	36192952	36194935	0	1	1983	0
chr14	36194016	36194637	prostate_normal.27157	0	.	36194016	36194637	0	1	621	0
chr14	37091567	37091918	MIP101.31964	0	.	37091567	37091918	0	1	351	0
chr14	37095249	37114643	T47D_Burge_Thompson.13412	0	-	37095249	37114643	0	2	74,485	0,18909
chr14	37099043	37100649	MIP101.31972	0	.	37099043	37100649	0	1	1606	0
chr14	37099413	37100140	H1_polyA+.54237	0	.	37099413	37100140	0	1	727	0
chr14	37099855	37100291	prostate_carcinoma.48255	0	.	37099855	37100291	0	1	436	0
chr14	37113462	37115085	REMC_LuminalBreast.47519	0	.	37113462	37115085	0	1	1623	0
chr14	37113963	37114601	T47D_Burge_Thompson.13413	0	.	37113963	37114601	0	1	638	0
chr14	37122260	37122685	T47D_Burge_Thompson.13419	0	.	37122260	37122685	0	1	425	0
chr14	37122765	37123107	T47D_Burge_Thompson.13420	0	.	37122765	37123107	0	1	342	0
chr14	37123244	37125435	T47D_Burge_Thompson.13421	0	.	37123244	37125435	0	1	2191	0
chr14	37124127	37124783	MCF7_Burge_Thompson.14004	0	.	37124127	37124783	0	1	656	0
chr14	37126791	37127656	MCF7_Burge_Thompson.14005	0	.	37126791	37127656	0	1	865	0
chr14	37126911	37127708	BT474_Burge_Thompson.15413	0	.	37126911	37127708	0	1	797	0
chr14	37263849	37288342	T47D_Burge_Thompson.13364	0	+	37263849	37288342	0	5	109,90,75,380,448	0,11027,12766,13882,24045
chr14	37274930	37278201	Rinn_00022478	0	+	37274930	37278201	0	3	36,76,471	0,1684,2800
chr14	37276613	37288362	ZR751_Thompson.11259	0	+	37276613	37288362	0	3	77,385,468	0,1118,11281
chr14	37277504	37278213	MIP101.31986	0	.	37277504	37278213	0	1	709	0
chr14	37277722	37278123	liver_polyA+.64471	0	.	37277722	37278123	0	1	401	0
chr14	37277722	37278123	kidney_Gilad.41814	0	.	37277722	37278123	0	1	401	0
chr14	37277756	37278244	BT474_Burge_Thompson.15427	0	.	37277756	37278244	0	1	488	0
chr14	37280520	37289707	prostate_carcinoma.48287	0	-	37280520	37289707	0	3	927,684,217	0,1077,8970
chr14	37280526	37282340	BT474_Burge_Thompson.15429	0	.	37280526	37282340	0	1	1814	0
chr14	37280569	37282659	REMC_LuminalBreast.47594	0	.	37280569	37282659	0	1	2090	0
chr14	37282772	37284938	prostate_normal.27202	0	.	37282772	37284938	0	1	2166	0
chr14	37283134	37283649	liver_polyA+.64475	0	.	37283134	37283649	0	1	515	0
chr14	37435014	37441080	Rinn_00022365	0	-	37435014	37441080	0	2	3352,110	0,5956
chr14	37435015	37441081	HIT000045828	0	-	37435015	37441081	0	2	3351,110	0,5956
chr14	37437177	37438471	prostate_carcinoma.48347	0	.	37437177	37438471	0	1	1294	0
chr14	37470509	37473973	prostate_carcinoma.48354	0	.	37470509	37473973	0	1	3464	0
chr14	37572613	37575390	H1_polyA+.54250	0	.	37572613	37575390	0	1	2777	0
chr14	37575533	37577091	prostate_carcinoma.46573	0	.	37575533	37577091	0	1	1558	0
chr14	37575743	37578392	H1_polyA+.54251	0	.	37575743	37578392	0	1	2649	0
chr14	37642678	37644678	prostate_carcinoma.46589	0	.	37642678	37644678	0	1	2000	0
chr14	37729805	37732441	H9_polyA+.22479	0	+	37729805	37732441	0	2	382,245	0,2391
chr14	37730285	37731021	H9_polyA+.22478	0	.	37730285	37731021	0	1	736	0
chr14	37733450	37733945	H9_polyA+.22481	0	.	37733450	37733945	0	1	495	0
chr14	37735445	37739200	H9_polyA-_Chen.6814	0	+	37735445	37739200	0	2	501,1199	0,2556
chr14	37744927	37745448	H9_polyA+.22484	0	.	37744927	37745448	0	1	521	0
chr14	38288279	38487199	HIT000093705	0	-	38288279	38487199	0	6	330,168,3663,58,101,67	0,85906,86217,141416,167457,198853
chr14	38288295	38487228	HIT000044891	0	-	38288295	38487228	0	7	314,73,122,168,3663,58,96	0,12761,13583,85890,86201,141400,198837
chr14	38288305	38377413	HIT000047191	0	-	38288305	38377413	0	6	304,67,73,122,168,2917	0,10831,12751,13573,85880,86191
chr14	38374190	38375555	H1_polyA+.54298	0	-	38374190	38375555	0	2	163,1059	0,306
chr14	38374308	38375192	HIT000387099	0	-	38374308	38375192	0	2	45,696	0,188
chr14	38374308	38375190	HIT000387125	0	-	38374308	38375190	0	2	45,694	0,188
chr14	38374497	38378105	brain_AmbionMAQC.20582	0	.	38374497	38378105	0	1	3608	0
chr14	38374815	38375665	prostate_normal.27243	0	.	38374815	38375665	0	1	850	0
chr14	38375794	38376981	H1_polyA+.54299	0	.	38375794	38376981	0	1	1187	0
chr14	38376092	38376584	BT474_Burge_Thompson.15432	0	.	38376092	38376584	0	1	492	0
chr14	38376852	38487192	XR_041513	0	-	38376852	38487192	0	3	1307,177,61	0,103621,110279
chr14	38377292	38378168	B_Cells_Pritchard.1636135	0	.	38377292	38378168	0	1	876	0
chr14	38377824	38378209	prostate_carcinoma.46602	0	.	38377824	38378209	0	1	385	0
chr14	38519923	38521576	REMC_BreastStem.24214	0	.	38519923	38521576	0	1	1653	0
chr14	38527914	38528773	REMC_BreastStem.24213	0	.	38527914	38528773	0	1	859	0
chr14	38682766	38683556	H1_polyA+.54319	0	.	38682766	38683556	0	1	790	0
chr14	38723524	38723913	H1_polyA+.54657	0	.	38723524	38723913	0	1	389	0
chr14	38740513	38744591	REMC_MyoepithelialBreast.44750	0	.	38740513	38744591	0	1	4078	0
chr14	38741501	38744123	REMC_BreastStem.24239	0	.	38741501	38744123	0	1	2622	0
chr14	38742261	38743922	B_cells_Cheung.92575	0	.	38742261	38743922	0	1	1661	0
chr14	38746464	38747111	REMC_MyoepithelialBreast.44752	0	.	38746464	38747111	0	1	647	0
chr14	38746475	38747081	REMC_BreastStem.24241	0	.	38746475	38747081	0	1	606	0
chr14	38747207	38747924	REMC_MyoepithelialBreast.44753	0	.	38747207	38747924	0	1	717	0
chr14	38747353	38748264	REMC_BreastStem.24242	0	.	38747353	38748264	0	1	911	0
chr14	38747541	38747846	B_cells_Cheung.92579	0	.	38747541	38747846	0	1	305	0
chr14	38903883	38905925	REMC_MyoepithelialBreast.44793	0	.	38903883	38905925	0	1	2042	0
chr14	38904935	38906867	prostate_carcinoma.46667	0	.	38904935	38906867	0	1	1932	0
chr14	38905137	38905836	BT474_Burge_Thompson.15466	0	.	38905137	38905836	0	1	699	0
chr14	38905340	38906544	B_cells_Cheung.92668	0	.	38905340	38906544	0	1	1204	0
chr14	38905534	38906651	H1_polyA+.54359	0	.	38905534	38906651	0	1	1117	0
chr14	38905711	38907517	REMC_LuminalBreast.47604	0	.	38905711	38907517	0	1	1806	0
chr14	38923915	38924747	REMC_MyoepithelialBreast.44803	0	.	38923915	38924747	0	1	832	0
chr14	38924316	38924768	K562.21397	0	.	38924316	38924768	0	1	452	0
chr14	38924365	38924723	REMC_LuminalBreast.47627	0	.	38924365	38924723	0	1	358	0
chr14	38924367	38924725	HepG2_Caltech_ENCODE.17128	0	.	38924367	38924725	0	1	358	0
chr14	38924369	38924745	H1_polyA+.54362	0	.	38924369	38924745	0	1	376	0
chr14	38924391	38924742	MCF7_Burge_Thompson.13992	0	.	38924391	38924742	0	1	351	0
chr14	38924391	38924745	B_cells_Cheung.92692	0	.	38924391	38924745	0	1	354	0
chr14	38924393	38924742	BT474_Burge_Thompson.15468	0	.	38924393	38924742	0	1	349	0
chr14	38924397	38924742	T47D_Burge_Thompson.13400	0	.	38924397	38924742	0	1	345	0
chr14	38924400	38924732	MIP101.32038	0	.	38924400	38924732	0	1	332	0
chr14	38924810	38925136	B_cells_Cheung.92693	0	.	38924810	38925136	0	1	326	0
chr14	38978128	38981722	B_Cells_Pritchard.1637225	0	-	38978128	38981722	0	2	645,312	0,3282
chr14	38979757	38980529	B_Cells_Pritchard.1637235	0	-	38979757	38980529	0	1	772	0
chr14	38980073	38980635	B_cells_Cheung.92739	0	.	38980073	38980635	0	1	562	0
chr14	38981171	38981726	B_cells_Cheung.92740	0	.	38981171	38981726	0	1	555	0
chr14	38985723	38988239	REMC_LuminalBreast.47633	0	.	38985723	38988239	0	1	2516	0
chr14	38985877	38986916	B_Cells_Pritchard.1637259	0	.	38985877	38986916	0	1	1039	0
chr14	38985928	38986901	B_cells_Cheung.92742	0	.	38985928	38986901	0	1	973	0
chr14	38986144	38986459	H1_rRNA-depleted_UCSD_REMC.42632	0	.	38986144	38986459	0	1	315	0
chr14	39012841	39015290	REMC_LuminalBreast.47637	0	.	39012841	39015290	0	1	2449	0
chr14	39013043	39015125	H1_polyA+.54366	0	.	39013043	39015125	0	1	2082	0
chr14	39036583	39039112	REMC_LuminalBreast.47647	0	.	39036583	39039112	0	1	2529	0
chr14	39037066	39038759	B_Cells_Pritchard.1637411	0	.	39037066	39038759	0	1	1693	0
chr14	39038201	39039314	H1_polyA+.54375	0	.	39038201	39039314	0	1	1113	0
chr14	39038232	39038996	B_cells_Cheung.92770	0	.	39038232	39038996	0	1	764	0
chr14	39075847	39076233	B_cells_Cheung.92781	0	.	39075847	39076233	0	1	386	0
chr14	39076154	39078262	REMC_LuminalBreast.47651	0	.	39076154	39078262	0	1	2108	0
chr14	39076329	39079463	B_cells_Cheung.92782	0	.	39076329	39079463	0	1	3134	0
chr14	39076619	39078225	B_Cells_Pritchard.1637529	0	.	39076619	39078225	0	1	1606	0
chr14	39078449	39081181	REMC_LuminalBreast.47652	0	.	39078449	39081181	0	1	2732	0
chr14	39085177	39085842	REMC_LuminalBreast.47654	0	.	39085177	39085842	0	1	665	0
chr14	39085282	39087185	B_cells_Cheung.92786	0	.	39085282	39087185	0	1	1903	0
chr14	39085340	39086217	B_Cells_Pritchard.1637567	0	.	39085340	39086217	0	1	877	0
chr14	39099838	39100322	B_Cells_Pritchard.1637619	0	.	39099838	39100322	0	1	484	0
chr14	39099889	39100211	B_cells_Cheung.92793	0	.	39099889	39100211	0	1	322	0
chr14	39099949	39100269	BT474_Burge_Thompson.15471	0	.	39099949	39100269	0	1	320	0
chr14	39130754	39131597	B_cells_Cheung.92797	0	.	39130754	39131597	0	1	843	0
chr14	39150459	39152122	B_cells_Cheung.92810	0	.	39150459	39152122	0	1	1663	0
chr14	39151227	39152106	B_Cells_Pritchard.1637811	0	.	39151227	39152106	0	1	879	0
chr14	39182767	39183672	B_cells_Cheung.92813	0	.	39182767	39183672	0	1	905	0
chr14	39223508	39224695	H1_polyA+.54394	0	.	39223508	39224695	0	1	1187	0
chr14	39327447	39328829	H1_polyA+.54399	0	.	39327447	39328829	0	1	1382	0
chr14	39826752	39828204	H1_polyA+.54410	0	.	39826752	39828204	0	1	1452	0
chr14	39848965	39887075	H1_polyA+.54414	0	-	39848965	39887075	0	3	88,115,242	0,8334,37868
chr14	40173172	40174814	H1_polyA+.54417	0	.	40173172	40174814	0	1	1642	0
chr14	40405044	40407485	H1_polyA+.54423	0	.	40405044	40407485	0	1	2441	0
chr14	40493513	40689048	H1_polyA+.54426	0	+	40493513	40689048	0	4	394,53,51,1021	0,8231,19781,194514
chr14	40493570	40501800	Rinn_00022487	0	+	40493570	40501800	0	2	337,57	0,8173
chr14	40493664	40514818	Rinn_00022390	0	+	40493664	40514818	0	4	243,55,52,524	0,8078,19629,20630
chr14	40493665	40514832	HIT000267024	0	+	40493665	40514832	0	4	242,53,51,537	0,8079,19629,20630
chr14	40579900	40580394	H9_polyA-_Chen.6842	0	.	40579900	40580394	0	1	494	0
chr14	40638278	40638950	H9_polyA-_Chen.6856	0	.	40638278	40638950	0	1	672	0
chr14	40658237	40658715	H1_polyA+.54474	0	.	40658237	40658715	0	1	478	0
chr14	40658492	40658818	H1_rRNA-depleted_UCSD_REMC.42720	0	.	40658492	40658818	0	1	326	0
chr14	40704833	40708125	H1_polyA+.54487	0	.	40704833	40708125	0	1	3292	0
chr14	40727977	40728989	melanoma_Garraway_short_term_cultures.31550	0	.	40727977	40728989	0	1	1012	0
chr14	41094845	41095187	prostate_carcinoma.46682	0	.	41094845	41095187	0	1	342	0
chr14	41142606	41144668	prostate_carcinoma.46686	0	.	41142606	41144668	0	1	2062	0
chr14	41143162	41144386	prostate_normal.27286	0	.	41143162	41144386	0	1	1224	0
chr14	41143350	41144273	H9_polyA+.21377	0	.	41143350	41144273	0	1	923	0
chr14	41143512	41145456	REMC_BreastStem.24271	0	.	41143512	41145456	0	1	1944	0
chr14	41143648	41145098	brain_AmbionMAQC.20612	0	.	41143648	41145098	0	1	1450	0
chr14	41768306	41768610	B_Cells_Pritchard.1642469	0	.	41768306	41768610	0	1	304	0
chr14	42814069	42814516	pHIT000023945	0	+	42814069	42814516	0	1	447	0
chr14	42839189	42839868	H1_polyA+.54527	0	.	42839189	42839868	0	1	679	0
chr14	42839211	42839566	B_cells_Cheung.92852	0	.	42839211	42839566	0	1	355	0
chr14	42839211	42839545	MDAMB468_Thompson.11527	0	.	42839211	42839545	0	1	334	0
chr14	42839218	42839545	ZR751_Thompson.11282	0	.	42839218	42839545	0	1	327	0
chr14	42839219	42839573	pHIT000023946	0	+	42839219	42839573	0	1	354	0
chr14	42839219	42839570	K562.21405	0	.	42839219	42839570	0	1	351	0
chr14	42839225	42839566	prostate_carcinoma.46693	0	.	42839225	42839566	0	1	341	0
chr14	42839226	42839874	melanoma_Garraway_short_term_cultures.31553	0	.	42839226	42839874	0	1	648	0
chr14	42839226	42839545	MDAMB231_Thompson.10502	0	.	42839226	42839545	0	1	319	0
chr14	42839226	42839559	NEC_from_H9.35489	0	.	42839226	42839559	0	1	333	0
chr14	42839228	42839830	HepG2_Caltech_ENCODE.17143	0	.	42839228	42839830	0	1	602	0
chr14	42839232	42839569	HeLa_polyA+_Chen.17058	0	.	42839232	42839569	0	1	337	0
chr14	42839233	42839546	MeWo_Garraway.16806	0	.	42839233	42839546	0	1	313	0
chr14	42839233	42839543	T47D_Burge_Thompson.13424	0	.	42839233	42839543	0	1	310	0
chr14	42839234	42839557	H1_rRNA-depleted_UCSD_REMC.42772	0	.	42839234	42839557	0	1	323	0
chr14	42839234	42839544	MCF7_Burge_Thompson.13995	0	.	42839234	42839544	0	1	310	0
chr14	42839234	42839542	brain_AmbionMAQC.20616	0	.	42839234	42839542	0	1	308	0
chr14	42839234	42839544	BT20_Thompson.10073	0	.	42839234	42839544	0	1	310	0
chr14	42839234	42839766	REMC_LuminalBreast.47662	0	.	42839234	42839766	0	1	532	0
chr14	43648480	43659683	prostate_normal.27308	0	-	43648480	43659683	0	2	179,314	0,10889
chr14	43659011	43659719	K562.21407	0	.	43659011	43659719	0	1	708	0
chr14	43659254	43659940	prostate_carcinoma.46695	0	.	43659254	43659940	0	1	686	0
chr14	43659278	43659819	B_cells_Cheung.92856	0	.	43659278	43659819	0	1	541	0
chr14	43659294	43659721	H1_polyA+.54531	0	.	43659294	43659721	0	1	427	0
chr14	43659294	43659721	H1_polyA+.54530	0	-	43659294	43659721	0	2	245,126	0,301
chr14	43659315	43659673	H1_rRNA-depleted_UCSD_REMC.42761	0	.	43659315	43659673	0	1	358	0
chr14	43659326	43659668	REMC_LuminalBreast.47664	0	.	43659326	43659668	0	1	342	0
chr14	43659326	43659666	REMC_MyoepithelialBreast.44848	0	.	43659326	43659666	0	1	340	0
chr14	43659326	43659657	REMC_BreastStem.24283	0	.	43659326	43659657	0	1	331	0
chr14	43659351	43659690	melanoma_Garraway_short_term_cultures.31555	0	.	43659351	43659690	0	1	339	0
chr14	43659352	43659674	T47D_Burge_Thompson.13425	0	.	43659352	43659674	0	1	322	0
chr14	43659352	43659674	MeI_Garraway.8374	0	.	43659352	43659674	0	1	322	0
chr14	43659352	43659674	ZR751_Thompson.11283	0	.	43659352	43659674	0	1	322	0
chr14	43659352	43659689	MDAMB231_Thompson.10504	0	.	43659352	43659689	0	1	337	0
chr14	43659352	43659679	BT474_Burge_Thompson.15475	0	.	43659352	43659679	0	1	327	0
chr14	43659352	43659674	MCF7_Burge_Thompson.14015	0	.	43659352	43659674	0	1	322	0
chr14	43659353	43659682	MDAMB468_Thompson.11528	0	.	43659353	43659682	0	1	329	0
chr14	43659353	43659674	brain_AmbionMAQC.20615	0	.	43659353	43659674	0	1	321	0
chr14	43659354	43659674	BT20_Thompson.10065	0	.	43659354	43659674	0	1	320	0
chr14	43659354	43659689	MCF10A_Thompson.10224	0	.	43659354	43659689	0	1	335	0
chr14	43659355	43659693	MeWo_Garraway.16808	0	.	43659355	43659693	0	1	338	0
chr14	43659355	43659801	B_Cells_Pritchard.1645195	0	.	43659355	43659801	0	1	446	0
chr14	43659357	43659688	CD4_Plagnol_activated.29780	0	.	43659357	43659688	0	1	331	0
chr14	43659357	43659691	CD4_Plagnol_resting.28974	0	.	43659357	43659691	0	1	334	0
chr14	44399318	44399889	K562.21409	0	.	44399318	44399889	0	1	571	0
chr14	44400250	44400620	CD4_Plagnol_activated.29783	0	.	44400250	44400620	0	1	370	0
chr14	44400255	44400621	B_Cells_Pritchard.1646471	0	.	44400255	44400621	0	1	366	0
chr14	44400257	44400620	CD4_Plagnol_resting.28976	0	.	44400257	44400620	0	1	363	0
chr14	44401047	44402089	K562.21412	0	.	44401047	44402089	0	1	1042	0
chr14	44401323	44402059	CD4_Plagnol_activated.29786	0	.	44401323	44402059	0	1	736	0
chr14	44401325	44402061	B_Cells_Pritchard.1646477	0	.	44401325	44402061	0	1	736	0
chr14	44401325	44402063	B_cells_Cheung.92866	0	.	44401325	44402063	0	1	738	0
chr14	44401328	44402048	prostate_carcinoma.46704	0	.	44401328	44402048	0	1	720	0
chr14	44401448	44402059	CD4_Plagnol_resting.28980	0	.	44401448	44402059	0	1	611	0
chr14	44401451	44401926	MIP101.32074	0	.	44401451	44401926	0	1	475	0
chr14	44401456	44402082	H1_polyA+.54534	0	.	44401456	44402082	0	1	626	0
chr14	44401502	44402058	MDAMB468_Thompson.11529	0	.	44401502	44402058	0	1	556	0
chr14	44402205	44404086	H1_polyA+.54535	0	.	44402205	44404086	0	1	1881	0
chr14	44402225	44404118	K562.21414	0	.	44402225	44404118	0	1	1893	0
chr14	44402225	44404118	K562.21413	0	-	44402225	44404118	0	2	616,745	0,1148
chr14	44402255	44403254	BT20_Thompson.10070	0	.	44402255	44403254	0	1	999	0
chr14	44402257	44403524	B_Cells_Pritchard.1646479	0	.	44402257	44403524	0	1	1267	0
chr14	44402356	44402924	T47D_Burge_Thompson.13426	0	.	44402356	44402924	0	1	568	0
chr14	44402501	44403255	B_cells_Cheung.92861	0	.	44402501	44403255	0	1	754	0
chr14	44402501	44403111	CD4_Plagnol_activated.29787	0	.	44402501	44403111	0	1	610	0
chr14	44402504	44403113	CD4_Plagnol_resting.28982	0	.	44402504	44403113	0	1	609	0
chr14	44402505	44402830	MIP101.32075	0	.	44402505	44402830	0	1	325	0
chr14	44402518	44403045	MCF10A_Thompson.10226	0	.	44402518	44403045	0	1	527	0
chr14	44403627	44404100	B_Cells_Pritchard.1646481	0	.	44403627	44404100	0	1	473	0
chr14	44404267	44404581	K562.21415	0	.	44404267	44404581	0	1	314	0
chr14	44405246	44405622	A549_Myers.36714	0	.	44405246	44405622	0	1	376	0
chr14	44426305	44426723	melanoma_Garraway_short_term_cultures.31557	0	.	44426305	44426723	0	1	418	0
chr14	44426407	44426755	HepG2_Caltech_ENCODE.17146	0	.	44426407	44426755	0	1	348	0
chr14	44426415	44426740	H1_rRNA-depleted_UCSD_REMC.42758	0	.	44426415	44426740	0	1	325	0
chr14	44426420	44426725	A549_Myers.36716	0	.	44426420	44426725	0	1	305	0
chr14	44426426	44426755	K562.21416	0	.	44426426	44426755	0	1	329	0
chr14	44426452	44426825	MCF7_Burge_Thompson.14016	0	.	44426452	44426825	0	1	373	0
chr14	44426505	44426914	REMC_MyoepithelialBreast.44851	0	.	44426505	44426914	0	1	409	0
chr14	44933042	44935548	REMC_LuminalBreast.47697	0	.	44933042	44935548	0	1	2506	0
chr14	45065711	45066032	A549_Myers.36787	0	.	45065711	45066032	0	1	321	0
chr14	45253176	45253543	B_cells_Cheung.93049	0	.	45253176	45253543	0	1	367	0
chr14	45253249	45254194	ZR751_Thompson.11309	0	.	45253249	45254194	0	1	945	0
chr14	45327837	45328141	B_cells_Cheung.93056	0	.	45327837	45328141	0	1	304	0
chr14	45818746	45819857	melanoma_Garraway_short_term_cultures.31627	0	.	45818746	45819857	0	1	1111	0
chr14	45977353	45977714	B_cells_Cheung.93078	0	.	45977353	45977714	0	1	361	0
chr14	47688675	47689283	H1_polyA+.54677	0	.	47688675	47689283	0	1	608	0
chr14	47744220	47782363	H1_polyA+.54778	0	.	47744220	47782363	0	1	38143	0
chr14	47751213	47784642	khalil_699	0	.	47751213	47784642	0	12	263,222,381,118,323,489,251,762,567,625,284,219	0,1003,6205,11124,11457,12124,13599,19239,20271,28697,30618,33210
chr14	47767574	47786350	H9_polyA+.21447	0	.	47767574	47786350	0	1	18776	0
chr14	47779297	47782379	H9_polyA-_Chen.6886	0	.	47779297	47782379	0	1	3082	0
chr14	47782442	47788096	H1_polyA+.54780	0	.	47782442	47788096	0	1	5654	0
chr14	47786459	47787623	H9_polyA+.21448	0	.	47786459	47787623	0	1	1164	0
chr14	47788262	47790849	H9_polyA+.21450	0	.	47788262	47790849	0	1	2587	0
chr14	47795910	47796421	H9_polyA-_Chen.6896	0	.	47795910	47796421	0	1	511	0
chr14	47797470	47799693	H9_polyA+.21452	0	.	47797470	47799693	0	1	2223	0
chr14	47798681	47799077	H1_rRNA-depleted_UCSD_REMC.42878	0	.	47798681	47799077	0	1	396	0
chr14	47798865	47799709	H1_polyA+.54786	0	.	47798865	47799709	0	1	844	0
chr14	47799189	47799642	H1_rRNA-depleted_UCSD_REMC.42877	0	.	47799189	47799642	0	1	453	0
chr14	47805647	47806233	H1_rRNA-depleted_UCSD_REMC.42883	0	.	47805647	47806233	0	1	586	0
chr14	47956431	47957939	H1_polyA+.54713	0	.	47956431	47957939	0	1	1508	0
chr14	47970579	47971209	H1_polyA+.54715	0	.	47970579	47971209	0	1	630	0
chr14	48787031	48787449	B_Cells_Pritchard.1653787	0	.	48787031	48787449	0	1	418	0
chr14	48787253	48787657	A549_Myers.36796	0	.	48787253	48787657	0	1	404	0
chr14	49054344	49062850	REMC_LuminalBreast.47774	0	.	49054344	49062850	0	1	8506	0
chr14	49054386	49060580	H1_polyA+.54730	0	.	49054386	49060580	0	1	6194	0
chr14	49057536	49060596	REMC_MyoepithelialBreast.44928	0	.	49057536	49060596	0	1	3060	0
chr14	49058139	49079649	REMC_LuminalBreast.47775	0	-	49058139	49079649	0	2	4711,103	0,21407
chr14	49060721	49063003	H1_polyA+.54731	0	.	49060721	49063003	0	1	2282	0
chr14	49097328	49099776	REMC_LuminalBreast.47783	0	.	49097328	49099776	0	1	2448	0
chr14	49097978	49099126	REMC_MyoepithelialBreast.44937	0	.	49097978	49099126	0	1	1148	0
chr14	49102017	49105230	REMC_LuminalBreast.47785	0	.	49102017	49105230	0	1	3213	0
chr14	49102207	49102953	REMC_MyoepithelialBreast.44938	0	.	49102207	49102953	0	1	746	0
chr14	49105839	49106548	H1_polyA+.54874	0	.	49105839	49106548	0	1	709	0
chr14	49105841	49106581	brain_AmbionMAQC.20660	0	.	49105841	49106581	0	1	740	0
chr14	49106642	49111614	B_cells_Cheung.93124	0	.	49106642	49111614	0	1	4972	0
chr14	49106781	49107249	HepG2_Caltech_ENCODE.17181	0	.	49106781	49107249	0	1	468	0
chr14	49107457	49109837	HIT000011757	0	-	49107457	49109837	0	1	2380	0
chr14	49108610	49109557	CD4_Plagnol_activated.29852	0	.	49108610	49109557	0	1	947	0
chr14	49108660	49109584	MCF7_Burge_Thompson.14075	0	.	49108660	49109584	0	1	924	0
chr14	49108989	49109628	CD4_Plagnol_resting.29060	0	.	49108989	49109628	0	1	639	0
chr14	49109122	49109542	HeLa_polyA+_Chen.17085	0	.	49109122	49109542	0	1	420	0
chr14	49109677	49111549	BT474_Burge_Thompson.15641	0	.	49109677	49111549	0	1	1872	0
chr14	49109940	49111542	CD4_Plagnol_resting.29059	0	.	49109940	49111542	0	1	1602	0
chr14	49109971	49111286	MeWo_Garraway.16879	0	.	49109971	49111286	0	1	1315	0
chr14	49109978	49111547	ZR751_Thompson.11318	0	.	49109978	49111547	0	1	1569	0
chr14	49110140	49111550	melanoma_Garraway_short_term_cultures.31677	0	.	49110140	49111550	0	1	1410	0
chr14	49110404	49111549	MCF10A_Thompson.10257	0	.	49110404	49111549	0	1	1145	0
chr14	49110462	49111376	REMC_BreastStem.24295	0	.	49110462	49111376	0	1	914	0
chr14	49110487	49111579	H9_polyA+.21463	0	.	49110487	49111579	0	1	1092	0
chr14	49110487	49112322	H9_polyA+.21462	0	+	49110487	49112322	0	2	931,207	0,1628
chr14	49110597	49111579	HeLa_polyA+_Chen.17087	0	.	49110597	49111579	0	1	982	0
chr14	49110627	49111483	CD4_Snyder.36885	0	.	49110627	49111483	0	1	856	0
chr14	49110820	49111548	MCF7_Burge_Thompson.14076	0	.	49110820	49111548	0	1	728	0
chr14	49152953	49153770	REMC_MyoepithelialBreast.44949	0	.	49152953	49153770	0	1	817	0
chr14	49172787	49173908	K562.21490	0	.	49172787	49173908	0	1	1121	0
chr14	49172796	49174614	melanoma_Garraway_short_term_cultures.31692	0	.	49172796	49174614	0	1	1818	0
chr14	49172800	49173804	MeWo_Garraway.16890	0	.	49172800	49173804	0	1	1004	0
chr14	49172865	49173816	BT20_Thompson.10100	0	.	49172865	49173816	0	1	951	0
chr14	49173034	49173788	MCF7_Burge_Thompson.14180	0	.	49173034	49173788	0	1	754	0
chr14	49173065	49173661	liver_polyA+.64840	0	.	49173065	49173661	0	1	596	0
chr14	49173151	49173693	prostate_normal.27394	0	.	49173151	49173693	0	1	542	0
chr14	49173240	49173781	CD4_Plagnol_resting.29070	0	.	49173240	49173781	0	1	541	0
chr14	49177113	49179138	B_Cells_Pritchard.1690125	0	+	49177113	49179138	0	1	2025	0
chr14	49178427	49178796	liver_polyA+.64851	0	.	49178427	49178796	0	1	369	0
chr14	49301908	49303048	HIT000049682	0	+	49301908	49303048	0	1	1140	0
chr14	49390079	49390386	IMR90_UCSD_REMC.24072	0	+	49390079	49390386	0	1	307	0
chr14	49390106	49399319	Rinn_00022986	0	+	49390106	49399319	0	2	30,274	0,8939
chr14	49397444	49399068	MIP101.32178	0	.	49397444	49399068	0	1	1624	0
chr14	49398040	49399117	REMC_BreastStem.24346	0	.	49398040	49399117	0	1	1077	0
chr14	49398966	49399318	K562.21510	0	.	49398966	49399318	0	1	352	0
chr14	49398979	49399327	IMR90_UCSD_REMC.24069	0	+	49398979	49399327	0	1	348	0
chr14	49398998	49404984	A549_Myers.36821	0	-	49398998	49404984	0	2	87,553	0,5433
chr14	49399001	49399348	H9_polyA-_Chen.6921	0	.	49399001	49399348	0	1	347	0
chr14	49399218	49401054	B_cells_Cheung.93232	0	.	49399218	49401054	0	1	1836	0
chr14	49399258	49401050	melanoma_Garraway_short_term_cultures.31721	0	.	49399258	49401050	0	1	1792	0
chr14	49399434	49401016	MIP101.32184	0	.	49399434	49401016	0	1	1582	0
chr14	49399448	49400914	REMC_LuminalBreast.47797	0	.	49399448	49400914	0	1	1466	0
chr14	49399450	49401003	REMC_MyoepithelialBreast.44979	0	.	49399450	49401003	0	1	1553	0
chr14	49399477	49400804	H1_polyA+.54767	0	.	49399477	49400804	0	1	1327	0
chr14	49399558	49400174	CD4_Plagnol_activated.29901	0	.	49399558	49400174	0	1	616	0
chr14	49404319	49404984	A549_Myers.36822	0	.	49404319	49404984	0	1	665	0
chr14	49407974	49408395	B_cells_Cheung.93238	0	.	49407974	49408395	0	1	421	0
chr14	49421686	49424551	B_cells_Cheung.93245	0	.	49421686	49424551	0	1	2865	0
chr14	49426669	49428303	B_cells_Cheung.93249	0	.	49426669	49428303	0	1	1634	0
chr14	49443686	49444666	REMC_MyoepithelialBreast.44990	0	.	49443686	49444666	0	1	980	0
chr14	49448233	49449124	REMC_MyoepithelialBreast.44991	0	.	49448233	49449124	0	1	891	0
chr14	49467228	49467797	B_cells_Cheung.93270	0	.	49467228	49467797	0	1	569	0
chr14	49478316	49479259	B_cells_Cheung.93276	0	.	49478316	49479259	0	1	943	0
chr14	49478509	49479336	B_Cells_Pritchard.1654923	0	.	49478509	49479336	0	1	827	0
chr14	49478510	49479142	prostate_carcinoma.46831	0	.	49478510	49479142	0	1	632	0
chr14	49480266	49483006	Rinn_00022741	0	-	49480266	49483006	0	2	94,386	0,2354
chr14	49482217	49483772	prostate_carcinoma.46830	0	.	49482217	49483772	0	1	1555	0
chr14	49487246	49487803	prostate_carcinoma.46832	0	.	49487246	49487803	0	1	557	0
chr14	49487805	49488937	REMC_MyoepithelialBreast.45738	0	.	49487805	49488937	0	1	1132	0
chr14	49487836	49489574	B_cells_Cheung.93285	0	.	49487836	49489574	0	1	1738	0
chr14	49487906	49488300	prostate_carcinoma.46833	0	.	49487906	49488300	0	1	394	0
chr14	49491216	49491764	B_cells_Cheung.93288	0	.	49491216	49491764	0	1	548	0
chr14	49493568	49494471	B_cells_Cheung.93291	0	.	49493568	49494471	0	1	903	0
chr14	49495446	49496174	B_cells_Cheung.93293	0	.	49495446	49496174	0	1	728	0
chr14	49496320	49497194	B_Cells_Pritchard.1655107	0	-	49496320	49497194	0	1	874	0
chr14	49496357	49497692	B_cells_Cheung.93279	0	.	49496357	49497692	0	1	1335	0
chr14	49496393	49498973	prostate_carcinoma.46835	0	-	49496393	49498973	0	2	694,803	0,1777
chr14	49500634	49501842	REMC_LuminalBreast.47807	0	.	49500634	49501842	0	1	1208	0
chr14	49500793	49501981	REMC_MyoepithelialBreast.45744	0	.	49500793	49501981	0	1	1188	0
chr14	49500855	49501940	B_cells_Cheung.93296	0	.	49500855	49501940	0	1	1085	0
chr14	49511478	49514649	B_cells_Cheung.93308	0	.	49511478	49514649	0	1	3171	0
chr14	49511654	49516494	B_Cells_Pritchard.1655317	0	.	49511654	49516494	0	1	4840	0
chr14	49513972	49515956	prostate_carcinoma.46845	0	.	49513972	49515956	0	1	1984	0
chr14	49514101	49515834	REMC_LuminalBreast.47809	0	.	49514101	49515834	0	1	1733	0
chr14	49514373	49515421	REMC_MyoepithelialBreast.45748	0	.	49514373	49515421	0	1	1048	0
chr14	49514723	49516392	B_cells_Cheung.93309	0	.	49514723	49516392	0	1	1669	0
chr14	49514767	49515445	BT474_Burge_Thompson.15530	0	.	49514767	49515445	0	1	678	0
chr14	49515435	49516249	REMC_BreastStem.24379	0	.	49515435	49516249	0	1	814	0
chr14	49515731	49517063	REMC_MyoepithelialBreast.45749	0	.	49515731	49517063	0	1	1332	0
chr14	49515897	49516799	REMC_LuminalBreast.47810	0	.	49515897	49516799	0	1	902	0
chr14	49545385	49546201	REMC_LuminalBreast.47818	0	.	49545385	49546201	0	1	816	0
chr14	49545429	49545979	melanoma_Garraway_short_term_cultures.31730	0	.	49545429	49545979	0	1	550	0
chr14	49547066	49548319	prostate_carcinoma.46856	0	.	49547066	49548319	0	1	1253	0
chr14	49548689	49551076	B_cells_Cheung.93854	0	.	49548689	49551076	0	1	2387	0
chr14	49548757	49553162	REMC_LuminalBreast.47819	0	.	49548757	49553162	0	1	4405	0
chr14	49548765	49553171	REMC_MyoepithelialBreast.45754	0	.	49548765	49553171	0	1	4406	0
chr14	49549072	49549856	prostate_carcinoma.46857	0	.	49549072	49549856	0	1	784	0
chr14	49551426	49552016	melanoma_Garraway_short_term_cultures.31732	0	.	49551426	49552016	0	1	590	0
chr14	49551574	49557717	B_Cells_Pritchard.1655369	0	-	49551574	49557717	0	2	1611,4255	0,1888
chr14	49553343	49559696	REMC_LuminalBreast.47820	0	.	49553343	49559696	0	1	6353	0
chr14	49553432	49557517	REMC_MyoepithelialBreast.45755	0	.	49553432	49557517	0	1	4085	0
chr14	49557618	49562269	REMC_MyoepithelialBreast.45756	0	.	49557618	49562269	0	1	4651	0
chr14	49557817	49559536	B_Cells_Pritchard.1655373	0	.	49557817	49559536	0	1	1719	0
chr14	49557900	49559519	melanoma_Garraway_short_term_cultures.31736	0	.	49557900	49559519	0	1	1619	0
chr14	49562773	49565790	B_cells_Cheung.93857	0	.	49562773	49565790	0	1	3017	0
chr14	49563036	49565064	REMC_LuminalBreast.47822	0	.	49563036	49565064	0	1	2028	0
chr14	49565809	49579133	REMC_LuminalBreast.47812	0	-	49565809	49579133	0	3	9916,78,2985	0,10050,10339
chr14	49567063	49569145	prostate_carcinoma.46858	0	.	49567063	49569145	0	1	2082	0
chr14	49567075	49570066	REMC_MyoepithelialBreast.45759	0	.	49567075	49570066	0	1	2991	0
chr14	49567415	49569251	MCF7_Burge_Thompson.14069	0	.	49567415	49569251	0	1	1836	0
chr14	49567422	49569159	MCF10A_Thompson.10267	0	.	49567422	49569159	0	1	1737	0
chr14	49567429	49569141	CD4_Plagnol_activated.29915	0	.	49567429	49569141	0	1	1712	0
chr14	49567431	49569141	melanoma_Garraway_short_term_cultures.31740	0	.	49567431	49569141	0	1	1710	0
chr14	49567432	49569120	MDAMB231_Thompson.10548	0	.	49567432	49569120	0	1	1688	0
chr14	49567433	49569158	ZR751_Thompson.11349	0	.	49567433	49569158	0	1	1725	0
chr14	49567439	49569171	BT20_Thompson.10124	0	.	49567439	49569171	0	1	1732	0
chr14	49567554	49569164	MDAMB468_Thompson.11584	0	.	49567554	49569164	0	1	1610	0
chr14	49569274	49574051	BT20_Thompson.10125	0	.	49569274	49574051	0	1	4777	0
chr14	49569294	49571964	MCF10A_Thompson.10268	0	.	49569294	49571964	0	1	2670	0
chr14	49569394	49572001	MCF7_Burge_Thompson.14070	0	.	49569394	49572001	0	1	2607	0
chr14	49569948	49571742	melanoma_Garraway_short_term_cultures.31742	0	.	49569948	49571742	0	1	1794	0
chr14	49570054	49572006	MIP101.32199	0	.	49570054	49572006	0	1	1952	0
chr14	49570060	49571974	MDAMB231_Thompson.10550	0	.	49570060	49571974	0	1	1914	0
chr14	49570120	49571576	MeI_Garraway.8441	0	.	49570120	49571576	0	1	1456	0
chr14	49570160	49574031	REMC_MyoepithelialBreast.45760	0	.	49570160	49574031	0	1	3871	0
chr14	49570162	49572015	prostate_carcinoma.46860	0	.	49570162	49572015	0	1	1853	0
chr14	49570212	49571934	REMC_BreastStem.24383	0	.	49570212	49571934	0	1	1722	0
chr14	49570444	49572031	ZR751_Thompson.11352	0	.	49570444	49572031	0	1	1587	0
chr14	49572115	49572875	MDAMB468_Thompson.11587	0	.	49572115	49572875	0	1	760	0
chr14	49577311	49578040	melanoma_Garraway_short_term_cultures.31745	0	.	49577311	49578040	0	1	729	0
chr14	49581546	49582681	B_Cells_Pritchard.1655455	0	+	49581546	49582681	0	1	1135	0
chr14	49586669	49589029	B_cells_Cheung.93851	0	.	49586669	49589029	0	1	2360	0
chr14	49586835	49588802	REMC_LuminalBreast.47825	0	.	49586835	49588802	0	1	1967	0
chr14	49586871	49587652	H1_polyA+.54771	0	.	49586871	49587652	0	1	781	0
chr14	49586918	49587649	prostate_carcinoma.46865	0	.	49586918	49587649	0	1	731	0
chr14	49586919	49587859	REMC_MyoepithelialBreast.45763	0	.	49586919	49587859	0	1	940	0
chr14	49587111	49587756	pHIT000023984	0	+	49587111	49587756	0	1	645	0
chr14	49587317	49587940	CD4_Plagnol_activated.29919	0	.	49587317	49587940	0	1	623	0
chr14	49588169	49588811	REMC_BreastStem.24387	0	.	49588169	49588811	0	1	642	0
chr14	49588403	49589017	CD4_Plagnol_resting.29112	0	.	49588403	49589017	0	1	614	0
chr14	49591911	49600848	REMC_MyoepithelialBreast.45765	0	.	49591911	49600848	0	1	8937	0
chr14	49592080	49592720	melanoma_Garraway_short_term_cultures.31748	0	.	49592080	49592720	0	1	640	0
chr14	49592444	49593297	CD4_Plagnol_resting.29115	0	.	49592444	49593297	0	1	853	0
chr14	49592672	49595460	REMC_LuminalBreast.47830	0	.	49592672	49595460	0	1	2788	0
chr14	49597041	49598158	CD4_Plagnol_resting.29116	0	.	49597041	49598158	0	1	1117	0
chr14	49597073	49599354	CD4_Plagnol_activated.29920	0	.	49597073	49599354	0	1	2281	0
chr14	49597604	49598066	liver_polyA+.64888	0	+	49597604	49598066	0	2	212,142	0,320
chr14	49602401	49604965	B_cells_Cheung.93862	0	.	49602401	49604965	0	1	2564	0
chr14	49602903	49603791	B_Cells_Pritchard.1655475	0	+	49602903	49603791	0	1	888	0
chr14	49605593	49608080	REMC_MyoepithelialBreast.45768	0	.	49605593	49608080	0	1	2487	0
chr14	49605712	49606511	B_cells_Cheung.93863	0	.	49605712	49606511	0	1	799	0
chr14	49606139	49609946	REMC_LuminalBreast.47832	0	.	49606139	49609946	0	1	3807	0
chr14	50373618	50374154	B_Cells_Pritchard.1657271	0	.	50373618	50374154	0	1	536	0
chr14	50374735	50377358	HepG2_Caltech_ENCODE.17229	0	.	50374735	50377358	0	1	2623	0
chr14	50375325	50375793	B_cells_Cheung.93555	0	.	50375325	50375793	0	1	468	0
chr14	50375455	50376734	H1_polyA+.54809	0	.	50375455	50376734	0	1	1279	0
chr14	50375651	50376954	melanoma_Garraway_short_term_cultures.31833	0	.	50375651	50376954	0	1	1303	0
chr14	50482638	50484821	REMC_BreastStem.24434	0	-	50482638	50484821	0	2	294,706	0,1477
chr14	50482701	50483137	H1_polyA+.54827	0	.	50482701	50483137	0	1	436	0
chr14	50483152	50485211	H1_polyA+.54828	0	.	50483152	50485211	0	1	2059	0
chr14	50483939	50485039	melanoma_Garraway_short_term_cultures.31847	0	.	50483939	50485039	0	1	1100	0
chr14	50483985	50485057	prostate_carcinoma.46958	0	.	50483985	50485057	0	1	1072	0
chr14	50484071	50484965	A549_Myers.36983	0	.	50484071	50484965	0	1	894	0
chr14	50492725	50498470	Rinn_00022409	0	-	50492725	50498470	0	2	4358,358	0,5387
chr14	50492726	50498470	ENST00000502842	0	-	50492726	50498470	0	2	4357,357	0,5387
chr14	50492726	50498473	HIT000047449	0	+	50492726	50498473	0	2	4357,360	0,5387
chr14	50495325	50497240	REMC_MyoepithelialBreast.45056	0	.	50495325	50497240	0	1	1915	0
chr14	50495890	50496512	A549_Myers.36985	0	.	50495890	50496512	0	1	622	0
chr14	50497759	50498850	REMC_MyoepithelialBreast.45057	0	.	50497759	50498850	0	1	1091	0
chr14	50505657	50506912	REMC_MyoepithelialBreast.45062	0	.	50505657	50506912	0	1	1255	0
chr14	50508656	50509548	REMC_BreastStem.24455	0	.	50508656	50509548	0	1	892	0
chr14	50640641	50641725	B_cells_Cheung.93582	0	.	50640641	50641725	0	1	1084	0
chr14	50741897	50742344	B_Cells_Pritchard.1658401	0	.	50741897	50742344	0	1	447	0
chr14	50798798	50799844	REMC_LuminalBreast.47870	0	.	50798798	50799844	0	1	1046	0
chr14	50798810	50800150	B_Cells_Pritchard.1658493	0	.	50798810	50800150	0	1	1340	0
chr14	50817731	50820960	H1_polyA+.54843	0	.	50817731	50820960	0	1	3229	0
chr14	50819987	50821254	B_Cells_Pritchard.1658559	0	.	50819987	50821254	0	1	1267	0
chr14	50820273	50820841	B_cells_Cheung.93639	0	.	50820273	50820841	0	1	568	0
chr14	50826578	50828094	H1_polyA+.54846	0	.	50826578	50828094	0	1	1516	0
chr14	50827546	50829251	B_Cells_Pritchard.1658577	0	.	50827546	50829251	0	1	1705	0
chr14	50828171	50829222	B_cells_Cheung.93646	0	.	50828171	50829222	0	1	1051	0
chr14	50828336	50829145	H1_polyA+.54847	0	.	50828336	50829145	0	1	809	0
chr14	50829462	50831037	H1_polyA+.54840	0	.	50829462	50831037	0	1	1575	0
chr14	50829597	50830913	B_cells_Cheung.93647	0	.	50829597	50830913	0	1	1316	0
chr14	50829679	50830973	B_Cells_Pritchard.1658581	0	.	50829679	50830973	0	1	1294	0
chr14	50831203	50832707	B_Cells_Pritchard.1658583	0	.	50831203	50832707	0	1	1504	0
chr14	50831246	50832810	H1_polyA+.54848	0	.	50831246	50832810	0	1	1564	0
chr14	50831709	50832823	B_cells_Cheung.93648	0	.	50831709	50832823	0	1	1114	0
chr14	50842044	50843000	B_cells_Cheung.93650	0	.	50842044	50843000	0	1	956	0
chr14	50842480	50843123	B_Cells_Pritchard.1658637	0	.	50842480	50843123	0	1	643	0
chr14	50864604	50865524	pHIT000023997	0	-	50864604	50865524	0	2	229,122	0,798
chr14	50869027	50871988	REMC_MyoepithelialBreast.45104	0	.	50869027	50871988	0	1	2961	0
chr14	50880067	50882194	H1_polyA+.54850	0	.	50880067	50882194	0	1	2127	0
chr14	50883119	50884411	H1_polyA+.54851	0	.	50883119	50884411	0	1	1292	0
chr14	50883131	50884010	B_cells_Cheung.93657	0	.	50883131	50884010	0	1	879	0
chr14	50883401	50884743	REMC_MyoepithelialBreast.45109	0	.	50883401	50884743	0	1	1342	0
chr14	50899509	50902123	prostate_carcinoma.46973	0	.	50899509	50902123	0	1	2614	0
chr14	50899824	50902015	B_cells_Cheung.93664	0	.	50899824	50902015	0	1	2191	0
chr14	50900034	50901149	H1_polyA+.54853	0	.	50900034	50901149	0	1	1115	0
chr14	50900361	50901976	B_Cells_Pritchard.1658885	0	.	50900361	50901976	0	1	1615	0
chr14	50900810	50901652	REMC_MyoepithelialBreast.45111	0	.	50900810	50901652	0	1	842	0
chr14	51612570	51613198	HeLa_polyA+_Chen.17202	0	.	51612570	51613198	0	1	628	0
chr14	51692321	51692762	prostate_normal.27506	0	.	51692321	51692762	0	1	441	0
chr14	51955321	51958451	REMC_LuminalBreast.47912	0	.	51955321	51958451	0	1	3130	0
chr14	51955766	51958408	prostate_carcinoma.47086	0	.	51955766	51958408	0	1	2642	0
chr14	51961813	51962905	B_cells_Cheung.93725	0	.	51961813	51962905	0	1	1092	0
chr14	51961915	51962935	B_Cells_Pritchard.1661013	0	.	51961915	51962935	0	1	1020	0
chr14	51963955	51965644	MIP101.32350	0	.	51963955	51965644	0	1	1689	0
chr14	51963964	51965282	B_cells_Cheung.93726	0	.	51963964	51965282	0	1	1318	0
chr14	52370907	52372198	REMC_MyoepithelialBreast.45248	0	.	52370907	52372198	0	1	1291	0
chr14	52538462	52539331	B_Cells_Pritchard.1662423	0	.	52538462	52539331	0	1	869	0
chr14	52542464	52544000	REMC_BreastStem.24584	0	.	52542464	52544000	0	1	1536	0
chr14	52542998	52543723	B_cells_Cheung.93832	0	.	52542998	52543723	0	1	725	0
chr14	52545535	52547489	REMC_LuminalBreast.48033	0	.	52545535	52547489	0	1	1954	0
chr14	52547399	52547929	B_Cells_Pritchard.1662485	0	+	52547399	52547929	0	1	530	0
chr14	52549467	52554675	B_Cells_Pritchard.1662437	0	-	52549467	52554675	0	4	98,163,1081,1817	0,1963,2258,3391
chr14	52551664	52552772	CD4_Plagnol_activated.30131	0	.	52551664	52552772	0	1	1108	0
chr14	52552920	52554687	REMC_LuminalBreast.48036	0	.	52552920	52554687	0	1	1767	0
chr14	52554116	52554662	HepG2_Caltech_ENCODE.17288	0	.	52554116	52554662	0	1	546	0
chr14	52554912	52557484	REMC_LuminalBreast.48037	0	.	52554912	52557484	0	1	2572	0
chr14	52554927	52558686	B_cells_Cheung.93842	0	.	52554927	52558686	0	1	3759	0
chr14	52555008	52564610	B_Cells_Pritchard.1662515	0	-	52555008	52564610	0	3	3265,511,1856	0,4163,7746
chr14	52555362	52557645	REMC_MyoepithelialBreast.45281	0	.	52555362	52557645	0	1	2283	0
chr14	52556352	52558386	REMC_BreastStem.24590	0	.	52556352	52558386	0	1	2034	0
chr14	52556794	52558447	CD4_Plagnol_resting.29292	0	.	52556794	52558447	0	1	1653	0
chr14	52556808	52558535	CD4_Plagnol_activated.30134	0	.	52556808	52558535	0	1	1727	0
chr14	52557736	52558288	REMC_LuminalBreast.48038	0	.	52557736	52558288	0	1	552	0
chr14	52557751	52558825	REMC_MyoepithelialBreast.45282	0	.	52557751	52558825	0	1	1074	0
chr14	52558913	52561184	B_cells_Cheung.93843	0	.	52558913	52561184	0	1	2271	0
chr14	52559845	52561339	REMC_LuminalBreast.48039	0	.	52559845	52561339	0	1	1494	0
chr14	52708207	52708988	B_Cells_Pritchard.1662975	0	-	52708207	52708988	0	1	781	0
chr14	52716800	52717134	B_cells_Cheung.93884	0	.	52716800	52717134	0	1	334	0
chr14	52724529	52724982	B_cells_Cheung.93887	0	.	52724529	52724982	0	1	453	0
chr14	52740846	52741630	B_cells_Cheung.93891	0	.	52740846	52741630	0	1	784	0
chr14	52742009	52743402	B_cells_Cheung.93892	0	.	52742009	52743402	0	1	1393	0
chr14	52750264	52751158	B_cells_Cheung.93897	0	.	52750264	52751158	0	1	894	0
chr14	52750798	52751146	B_Cells_Pritchard.1663161	0	.	52750798	52751146	0	1	348	0
chr14	52762777	52763780	MCF7_Burge_Thompson.14183	0	.	52762777	52763780	0	1	1003	0
chr14	52762792	52764437	B_Cells_Pritchard.1663215	0	.	52762792	52764437	0	1	1645	0
chr14	52763565	52763937	B_cells_Cheung.93900	0	.	52763565	52763937	0	1	372	0
chr14	52860679	52864736	MIP101.32395	0	.	52860679	52864736	0	1	4057	0
chr14	52862381	52865719	B_Cells_Pritchard.1663485	0	.	52862381	52865719	0	1	3338	0
chr14	52862390	52865260	B_cells_Cheung.93918	0	.	52862390	52865260	0	1	2870	0
chr14	52862551	52865608	H1_polyA+.55138	0	.	52862551	52865608	0	1	3057	0
chr14	52866994	52868884	B_Cells_Pritchard.1663493	0	.	52866994	52868884	0	1	1890	0
chr14	52867733	52870463	H1_polyA+.55140	0	.	52867733	52870463	0	1	2730	0
chr14	52868122	52869416	MIP101.32398	0	.	52868122	52869416	0	1	1294	0
chr14	52868123	52869012	B_cells_Cheung.93921	0	.	52868123	52869012	0	1	889	0
chr14	52870612	52871613	H1_polyA+.55141	0	.	52870612	52871613	0	1	1001	0
chr14	52888581	52889441	B_Cells_Pritchard.1663579	0	.	52888581	52889441	0	1	860	0
chr14	52892805	52893165	B_cells_Cheung.93942	0	.	52892805	52893165	0	1	360	0
chr14	52904238	52904594	B_cells_Cheung.93946	0	.	52904238	52904594	0	1	356	0
chr14	52907957	52910342	B_cells_Cheung.93949	0	.	52907957	52910342	0	1	2385	0
chr14	52908493	52908866	ovary_Raymond.130072	0	.	52908493	52908866	0	1	373	0
chr14	52909002	52910573	H1_polyA+.55149	0	.	52909002	52910573	0	1	1571	0
chr14	52925594	52926849	H1_polyA+.55152	0	.	52925594	52926849	0	1	1255	0
chr14	52937136	52940244	B_Cells_Pritchard.1663799	0	.	52937136	52940244	0	1	3108	0
chr14	52937239	52938732	B_cells_Cheung.93957	0	.	52937239	52938732	0	1	1493	0
chr14	52937642	52938731	H1_polyA+.55156	0	.	52937642	52938731	0	1	1089	0
chr14	52937792	52938465	prostate_carcinoma.47140	0	.	52937792	52938465	0	1	673	0
chr14	52980322	52981728	B_cells_Cheung.93972	0	.	52980322	52981728	0	1	1406	0
chr14	53064097	53066416	H1_polyA+.55165	0	.	53064097	53066416	0	1	2319	0
chr14	53073073	53074718	H1_polyA+.55168	0	.	53073073	53074718	0	1	1645	0
chr14	53098121	53099627	B_cells_Cheung.94000	0	.	53098121	53099627	0	1	1506	0
chr14	53118000	53118951	HepG2_Caltech_ENCODE.17302	0	.	53118000	53118951	0	1	951	0
chr14	53134087	53139768	MIP101.32408	0	.	53134087	53139768	0	1	5681	0
chr14	53134191	53141658	HepG2_Caltech_ENCODE.17295	0	.	53134191	53141658	0	1	7467	0
chr14	53221133	53224304	MIP101.32416	0	.	53221133	53224304	0	1	3171	0
chr14	53222639	53223048	MDAMB231_Thompson.10629	0	.	53222639	53223048	0	1	409	0
chr14	53223419	53224439	B_Cells_Pritchard.1664627	0	.	53223419	53224439	0	1	1020	0
chr14	53223637	53224721	prostate_carcinoma.47142	0	.	53223637	53224721	0	1	1084	0
chr14	53223662	53225564	H1_polyA+.55172	0	.	53223662	53225564	0	1	1902	0
chr14	53241955	53244070	MIP101.32417	0	.	53241955	53244070	0	1	2115	0
chr14	53242137	53243744	B_Cells_Pritchard.1664693	0	.	53242137	53243744	0	1	1607	0
chr14	53274069	53277349	MIP101.32437	0	.	53274069	53277349	0	1	3280	0
chr14	53329468	53329861	B_Cells_Pritchard.1664955	0	.	53329468	53329861	0	1	393	0
chr14	53392374	53392721	B_Cells_Pritchard.1665423	0	.	53392374	53392721	0	1	347	0
chr14	53415703	53416472	B_Cells_Pritchard.1665511	0	.	53415703	53416472	0	1	769	0
chr14	53482152	53483599	T47D_Burge_Thompson.13589	0	.	53482152	53483599	0	1	1447	0
chr14	53482575	53483017	BT474_Burge_Thompson.15607	0	.	53482575	53483017	0	1	442	0
chr14	53482593	53483004	colon_Burge.17742	0	.	53482593	53483004	0	1	411	0
chr14	53482637	53483102	B_Cells_Pritchard.1665699	0	.	53482637	53483102	0	1	465	0
chr14	53483099	53483520	A549_Myers.37115	0	.	53483099	53483520	0	1	421	0
chr14	53548725	53550099	MIP101.32466	0	.	53548725	53550099	0	1	1374	0
chr14	53549053	53550009	HepG2_Caltech_ENCODE.17325	0	.	53549053	53550009	0	1	956	0
chr14	53672707	53674352	HepG2_Caltech_ENCODE.17327	0	.	53672707	53674352	0	1	1645	0
chr14	53676646	53677272	HepG2_Caltech_ENCODE.17329	0	.	53676646	53677272	0	1	626	0
chr14	53879827	53906545	pHIT000024021	0	+	53879827	53906545	0	3	73,136,145	0,665,26573
chr14	53983110	53984010	REMC_LuminalBreast.48060	0	.	53983110	53984010	0	1	900	0
chr14	53983137	53984182	REMC_MyoepithelialBreast.45307	0	.	53983137	53984182	0	1	1045	0
chr14	53985204	53987903	REMC_MyoepithelialBreast.45309	0	.	53985204	53987903	0	1	2699	0
chr14	53989437	53990490	REMC_MyoepithelialBreast.45311	0	.	53989437	53990490	0	1	1053	0
chr14	53989683	53990647	REMC_LuminalBreast.48063	0	.	53989683	53990647	0	1	964	0
chr14	54001466	54003849	REMC_MyoepithelialBreast.45316	0	.	54001466	54003849	0	1	2383	0
chr14	54001522	54002937	REMC_LuminalBreast.48067	0	.	54001522	54002937	0	1	1415	0
chr14	54007971	54008966	REMC_LuminalBreast.48069	0	.	54007971	54008966	0	1	995	0
chr14	54008299	54009824	REMC_MyoepithelialBreast.45319	0	.	54008299	54009824	0	1	1525	0
chr14	54084103	54084862	H1_polyA+.55202	0	.	54084103	54084862	0	1	759	0
chr14	54101174	54102056	prostate_normal.27579	0	.	54101174	54102056	0	1	882	0
chr14	54332558	54333834	melanoma_Garraway_short_term_cultures.32063	0	.	54332558	54333834	0	1	1276	0
chr14	54339226	54350284	REMC_BreastStem.25174	0	.	54339226	54350284	0	1	11058	0
chr14	54344458	54370264	pHIT000024031	0	+	54344458	54370264	0	2	461,133	0,25673
chr14	54357870	54368323	REMC_LuminalBreast.48792	0	.	54357870	54368323	0	1	10453	0
chr14	54365813	54366847	B_cells_Cheung.94226	0	.	54365813	54366847	0	1	1034	0
chr14	54366187	54366813	B_Cells_Pritchard.1667751	0	-	54366187	54366813	0	1	626	0
chr14	54366839	54373353	REMC_MyoepithelialBreast.45338	0	.	54366839	54373353	0	1	6514	0
chr14	54368445	54369747	B_cells_Cheung.94228	0	.	54368445	54369747	0	1	1302	0
chr14	54452047	54452891	B_Cells_Pritchard.1667905	0	+	54452047	54452891	0	1	844	0
chr14	54452191	54452942	B_cells_Cheung.94261	0	.	54452191	54452942	0	1	751	0
chr14	54609958	54611780	REMC_LuminalBreast.48094	0	.	54609958	54611780	0	1	1822	0
chr14	54610788	54611585	BT474_Burge_Thompson.15631	0	.	54610788	54611585	0	1	797	0
chr14	54611122	54611743	REMC_MyoepithelialBreast.45359	0	.	54611122	54611743	0	1	621	0
chr14	54611873	54612713	REMC_MyoepithelialBreast.45360	0	.	54611873	54612713	0	1	840	0
chr14	54612039	54614968	REMC_LuminalBreast.48095	0	.	54612039	54614968	0	1	2929	0
chr14	54612080	54612726	melanoma_Garraway_short_term_cultures.32082	0	.	54612080	54612726	0	1	646	0
chr14	54613074	54615117	REMC_MyoepithelialBreast.45361	0	.	54613074	54615117	0	1	2043	0
chr14	54613532	54614420	B_Cells_Pritchard.1676135	0	-	54613532	54614420	0	1	888	0
chr14	54613866	54614405	B_cells_Cheung.94320	0	.	54613866	54614405	0	1	539	0
chr14	54615353	54616261	REMC_MyoepithelialBreast.45362	0	.	54615353	54616261	0	1	908	0
chr14	54624605	54626385	REMC_LuminalBreast.48102	0	.	54624605	54626385	0	1	1780	0
chr14	54628111	54629981	REMC_LuminalBreast.48104	0	.	54628111	54629981	0	1	1870	0
chr14	54628881	54629853	MIP101.32526	0	.	54628881	54629853	0	1	972	0
chr14	54634156	54635790	REMC_LuminalBreast.48106	0	.	54634156	54635790	0	1	1634	0
chr14	54635013	54635429	B_Cells_Pritchard.1676199	0	-	54635013	54635429	0	1	416	0
chr14	54635027	54635611	B_cells_Cheung.94330	0	.	54635027	54635611	0	1	584	0
chr14	54643624	54646293	REMC_LuminalBreast.48109	0	.	54643624	54646293	0	1	2669	0
chr14	54729963	54742323	B_Cells_Pritchard.1668275	0	+	54729963	54742323	0	3	41,462,141	0,8984,12219
chr14	54737550	54738172	REMC_LuminalBreast.48138	0	.	54737550	54738172	0	1	622	0
chr14	54737625	54737932	B_Cells_Pritchard.1668323	0	+	54737625	54737932	0	1	307	0
chr14	54737645	54738002	B_cells_Cheung.94341	0	.	54737645	54738002	0	1	357	0
chr14	54738779	54739557	REMC_LuminalBreast.48139	0	.	54738779	54739557	0	1	778	0
chr14	54739015	54739574	B_cells_Cheung.94343	0	.	54739015	54739574	0	1	559	0
chr14	54743936	54744766	H1_polyA+.55389	0	.	54743936	54744766	0	1	830	0
chr14	54743981	54744611	B_Cells_Pritchard.1668333	0	.	54743981	54744611	0	1	630	0
chr14	54752851	54753307	H1_polyA+.55390	0	.	54752851	54753307	0	1	456	0
chr14	54893396	54896586	CD4_Plagnol_resting.29448	0	.	54893396	54896586	0	1	3190	0
chr14	54896562	54897237	REMC_MyoepithelialBreast.45699	0	.	54896562	54897237	0	1	675	0
chr14	54993505	54994235	B_Cells_Pritchard.1668815	0	.	54993505	54994235	0	1	730	0
chr14	54997035	54997894	B_Cells_Pritchard.1668829	0	.	54997035	54997894	0	1	859	0
chr14	55004025	55004356	B_Cells_Pritchard.1668863	0	.	55004025	55004356	0	1	331	0
chr14	55004040	55004456	A549_Myers.37236	0	.	55004040	55004456	0	1	416	0
chr14	55004490	55005480	B_Cells_Pritchard.1668865	0	.	55004490	55005480	0	1	990	0
chr14	55013486	55014494	B_Cells_Pritchard.1668893	0	.	55013486	55014494	0	1	1008	0
chr14	55030327	55030680	REMC_MyoepithelialBreast.45383	0	.	55030327	55030680	0	1	353	0
chr14	55036092	55040184	B_Cells_Pritchard.1668983	0	-	55036092	55040184	0	2	214,1520	0,2572
chr14	55038786	55039887	B_cells_Cheung.94407	0	.	55038786	55039887	0	1	1101	0
chr14	55039307	55040221	melanoma_Garraway_short_term_cultures.32123	0	.	55039307	55040221	0	1	914	0
chr14	55048798	55049504	H1_polyA+.55359	0	.	55048798	55049504	0	1	706	0
chr14	55050160	55050870	B_Cells_Pritchard.1669039	0	.	55050160	55050870	0	1	710	0
chr14	55050469	55052560	H1_polyA+.55360	0	.	55050469	55052560	0	1	2091	0
chr14	55050726	55052800	MIP101.32560	0	.	55050726	55052800	0	1	2074	0
chr14	55051085	55052535	B_Cells_Pritchard.1669041	0	.	55051085	55052535	0	1	1450	0
chr14	55051521	55052900	REMC_LuminalBreast.48175	0	.	55051521	55052900	0	1	1379	0
chr14	55054761	55055520	H1_polyA+.55494	0	.	55054761	55055520	0	1	759	0
chr14	55055180	55056173	MIP101.32562	0	.	55055180	55056173	0	1	993	0
chr14	55057013	55057572	B_cells_Cheung.94422	0	.	55057013	55057572	0	1	559	0
chr14	55061191	55061791	H1_polyA+.55495	0	.	55061191	55061791	0	1	600	0
chr14	55061331	55063197	B_cells_Cheung.94424	0	.	55061331	55063197	0	1	1866	0
chr14	55065641	55067766	H1_polyA+.55498	0	.	55065641	55067766	0	1	2125	0
chr14	55072351	55074687	H1_polyA+.55502	0	.	55072351	55074687	0	1	2336	0
chr14	55076184	55078824	H1_polyA+.55503	0	.	55076184	55078824	0	1	2640	0
chr14	55083144	55084597	pHIT000113377	0	+	55083144	55084597	0	3	150,119,349	0,261,1104
chr14	55083987	55084593	B_cells_Cheung.94434	0	.	55083987	55084593	0	1	606	0
chr14	55086661	55088489	H1_polyA+.55507	0	.	55086661	55088489	0	1	1828	0
chr14	55088660	55092125	H1_polyA+.55500	0	.	55088660	55092125	0	1	3465	0
chr14	55088685	55092133	B_cells_Cheung.94437	0	.	55088685	55092133	0	1	3448	0
chr14	55088889	55090860	REMC_MyoepithelialBreast.45390	0	.	55088889	55090860	0	1	1971	0
chr14	55088956	55092084	REMC_LuminalBreast.48180	0	.	55088956	55092084	0	1	3128	0
chr14	55089056	55090864	melanoma_Garraway_short_term_cultures.32127	0	.	55089056	55090864	0	1	1808	0
chr14	55089274	55090888	K562.21675	0	.	55089274	55090888	0	1	1614	0
chr14	55089431	55090899	ZR751_Thompson.11475	0	.	55089431	55090899	0	1	1468	0
chr14	55092270	55096660	REMC_LuminalBreast.48181	0	.	55092270	55096660	0	1	4390	0
chr14	55092279	55096370	REMC_MyoepithelialBreast.45392	0	.	55092279	55096370	0	1	4091	0
chr14	55092283	55096787	H1_polyA+.55501	0	.	55092283	55096787	0	1	4504	0
chr14	55092304	55096240	HepG2_Caltech_ENCODE.17429	0	.	55092304	55096240	0	1	3936	0
chr14	55093134	55094102	T47D_Burge_Thompson.13641	0	.	55093134	55094102	0	1	968	0
chr14	55094453	55096465	REMC_BreastStem.24695	0	.	55094453	55096465	0	1	2012	0
chr14	55094507	55096271	HeLa_polyA+_Chen.17306	0	.	55094507	55096271	0	1	1764	0
chr14	55094522	55095999	B_cells_Cheung.94439	0	.	55094522	55095999	0	1	1477	0
chr14	55094526	55096245	ZR751_Thompson.11485	0	.	55094526	55096245	0	1	1719	0
chr14	55094526	55095871	MDAMB468_Thompson.11704	0	.	55094526	55095871	0	1	1345	0
chr14	55094527	55096093	K562.21678	0	.	55094527	55096093	0	1	1566	0
chr14	55094529	55095998	MCF7_Burge_Thompson.14228	0	.	55094529	55095998	0	1	1469	0
chr14	55094537	55095989	MDAMB231_Thompson.10682	0	.	55094537	55095989	0	1	1452	0
chr14	55094551	55096126	melanoma_Garraway_short_term_cultures.32130	0	.	55094551	55096126	0	1	1575	0
chr14	55094585	55095997	BT474_Burge_Thompson.15671	0	.	55094585	55095997	0	1	1412	0
chr14	55094596	55095974	prostate_normal.27641	0	.	55094596	55095974	0	1	1378	0
chr14	55094597	55095984	NEC_from_H9.36082	0	.	55094597	55095984	0	1	1387	0
chr14	55094896	55096222	BT20_Thompson.10247	0	.	55094896	55096222	0	1	1326	0
chr14	55095253	55095966	H9_polyA+.21732	0	.	55095253	55095966	0	1	713	0
chr14	55095282	55095939	T47D_Burge_Thompson.13643	0	.	55095282	55095939	0	1	657	0
chr14	55096303	55097087	B_cells_Cheung.94441	0	.	55096303	55097087	0	1	784	0
chr14	55250568	55251668	REMC_MyoepithelialBreast.45411	0	.	55250568	55251668	0	1	1100	0
chr14	55253198	55254174	REMC_MyoepithelialBreast.45415	0	.	55253198	55254174	0	1	976	0
chr14	55317600	55333155	melanoma_Garraway_short_term_cultures.32141	0	-	55317600	55333155	0	3	223,89,82	0,12238,15473
chr14	55317665	55319192	HepG2_Caltech_ENCODE.17447	0	.	55317665	55319192	0	1	1527	0
chr14	55376714	55377636	K562.21695	0	.	55376714	55377636	0	1	922	0
chr14	55418287	55418626	A549_Myers.37257	0	.	55418287	55418626	0	1	339	0
chr14	55482414	55483390	REMC_MyoepithelialBreast.45421	0	.	55482414	55483390	0	1	976	0
chr14	55487738	55488304	B_cells_Cheung.94486	0	.	55487738	55488304	0	1	566	0
chr14	55491726	55494686	REMC_MyoepithelialBreast.45417	0	+	55491726	55494686	0	2	2035,254	0,2706
chr14	55492838	55494641	melanoma_Garraway_short_term_cultures.32148	0	.	55492838	55494641	0	1	1803	0
chr14	55613016	55632360	pHIT000024046	0	-	55613016	55632360	0	3	258,110,36	0,9784,19308
chr14	55839075	55839489	prostate_carcinoma.47333	0	.	55839075	55839489	0	1	414	0
chr14	55855211	55856395	REMC_MyoepithelialBreast.45512	0	.	55855211	55856395	0	1	1184	0
chr14	55855462	55857545	REMC_BreastStem.24747	0	.	55855462	55857545	0	1	2083	0
chr14	55858970	55860889	REMC_MyoepithelialBreast.45514	0	.	55858970	55860889	0	1	1919	0
chr14	55875684	55876846	REMC_BreastStem.24752	0	.	55875684	55876846	0	1	1162	0
chr14	55930239	55931560	REMC_BreastStem.24767	0	.	55930239	55931560	0	1	1321	0
chr14	56050419	56051791	Rinn_00022755	0	-	56050419	56051791	0	2	547,352	0,1020
chr14	56202039	56202944	B_cells_Cheung.94540	0	.	56202039	56202944	0	1	905	0
chr14	56210076	56210476	B_Cells_Pritchard.1672061	0	.	56210076	56210476	0	1	400	0
chr14	56577157	56578975	XR_039052	0	+	56577157	56578975	0	3	1546,107,165	0,1546,1653
chr14	56577157	56578975	XR_017569	0	+	56577157	56578975	0	3	1546,107,165	0,1546,1653
chr14	56577358	56582564	pHIT000113388	0	+	56577358	56582564	0	2	260,241	0,4965
chr14	56881425	56882022	brain_AmbionMAQC.20944	0	.	56881425	56882022	0	1	597	0
chr14	56956272	56958491	REMC_MyoepithelialBreast.45549	0	.	56956272	56958491	0	1	2219	0
chr14	56987813	56989185	B_Cells_Pritchard.1673937	0	.	56987813	56989185	0	1	1372	0
chr14	56998264	56998918	B_Cells_Pritchard.1673963	0	.	56998264	56998918	0	1	654	0
chr14	56998476	56998801	liver_polyA+.65666	0	.	56998476	56998801	0	1	325	0
chr14	56998969	56999836	liver_polyA+.65667	0	.	56998969	56999836	0	1	867	0
chr14	56998969	56999836	kidney_Gilad.42589	0	.	56998969	56999836	0	1	867	0
chr14	56999051	57003758	B_Cells_Pritchard.1673967	0	-	56999051	57003758	0	1	4707	0
chr14	56999078	56999867	B_cells_Cheung.94641	0	.	56999078	56999867	0	1	789	0
chr14	57000122	57001491	B_cells_Cheung.94642	0	.	57000122	57001491	0	1	1369	0
chr14	57000144	57003254	liver_polyA+.65669	0	.	57000144	57003254	0	1	3110	0
chr14	58086918	58087254	K562.21800	0	.	58086918	58087254	0	1	336	0
chr14	58111713	58112996	prostate_carcinoma.47431	0	.	58111713	58112996	0	1	1283	0
chr14	58112116	58112803	B_Cells_Pritchard.1676321	0	.	58112116	58112803	0	1	687	0
chr14	58216315	58235281	pHIT000024064	0	-	58216315	58235281	0	4	237,110,170,17	0,12101,18185,18949
chr14	58219644	58220033	B_Cells_Pritchard.1676671	0	.	58219644	58220033	0	1	389	0
chr14	58253376	58253679	pHIT000024065	0	-	58253376	58253679	0	1	303	0
chr14	58363998	58364826	XR_039094	0	-	58363998	58364826	0	1	828	0
chr14	58364149	58399772	pHIT000113401	0	-	58364149	58399772	0	2	494,28	0,35595
chr14	58364203	58364757	H1_polyA+.55547	0	.	58364203	58364757	0	1	554	0
chr14	58506364	58507743	B_Cells_Pritchard.1677509	0	.	58506364	58507743	0	1	1379	0
chr14	58568058	58568677	B_Cells_Pritchard.1677691	0	.	58568058	58568677	0	1	619	0
chr14	58578357	58578823	B_Cells_Pritchard.1677725	0	.	58578357	58578823	0	1	466	0
chr14	58910411	58911227	REMC_MyoepithelialBreast.45629	0	.	58910411	58911227	0	1	816	0
chr14	58919903	58921421	melanoma_Garraway_short_term_cultures.32254	0	.	58919903	58921421	0	1	1518	0
chr14	58921995	58923181	REMC_MyoepithelialBreast.45635	0	.	58921995	58923181	0	1	1186	0
chr14	58923982	58926157	HeLa_polyA+_Chen.17384	0	.	58923982	58926157	0	1	2175	0
chr14	58924448	58925070	B_cells_Cheung.94846	0	.	58924448	58925070	0	1	622	0
chr14	58924490	58925810	REMC_MyoepithelialBreast.45636	0	.	58924490	58925810	0	1	1320	0
chr14	58929317	58930530	H1_polyA+.55557	0	.	58929317	58930530	0	1	1213	0
chr14	58930051	58930532	B_Cells_Pritchard.1678957	0	.	58930051	58930532	0	1	481	0
chr14	58930095	58930685	REMC_MyoepithelialBreast.45639	0	.	58930095	58930685	0	1	590	0
chr14	58954324	58955569	B_cells_Cheung.94859	0	.	58954324	58955569	0	1	1245	0
chr14	59444068	59444377	liver_polyA+.65820	0	.	59444068	59444377	0	1	309	0
chr14	59454997	59456426	H1_polyA+.55600	0	.	59454997	59456426	0	1	1429	0
chr14	59455543	59456494	prostate_carcinoma.47489	0	.	59455543	59456494	0	1	951	0
chr14	59455660	59456407	HepG2_Caltech_ENCODE.17539	0	.	59455660	59456407	0	1	747	0
chr14	59455673	59456331	prostate_normal.27795	0	.	59455673	59456331	0	1	658	0
chr14	59455949	59456316	A549_Myers.37494	0	.	59455949	59456316	0	1	367	0
chr14	59455992	59456406	H9_polyA+.21888	0	.	59455992	59456406	0	1	414	0
chr14	59458378	59458831	B_cells_Cheung.94907	0	.	59458378	59458831	0	1	453	0
chr14	59458379	59458701	H1_rRNA-depleted_UCSD_REMC.43581	0	.	59458379	59458701	0	1	322	0
chr14	59749412	59759956	B_Cells_Pritchard.1681039	0	+	59749412	59759956	0	3	504,138,621	0,731,9923
chr14	59751971	59752596	B_cells_Cheung.94977	0	.	59751971	59752596	0	1	625	0
chr14	59754422	59754986	B_cells_Cheung.94979	0	.	59754422	59754986	0	1	564	0
chr14	59859684	59861724	REMC_MyoepithelialBreast.45731	0	+	59859684	59861724	0	2	63,1643	0,397
chr14	59864392	59864814	A549_Myers.37534	0	.	59864392	59864814	0	1	422	0
chr14	59867679	59868048	B_cells_Cheung.95049	0	.	59867679	59868048	0	1	369	0
chr14	59867739	59868741	B_Cells_Pritchard.1681307	0	.	59867739	59868741	0	1	1002	0
chr14	59914599	59915131	prostate_carcinoma.47567	0	.	59914599	59915131	0	1	532	0
chr14	60023856	60024497	prostate_carcinoma.47583	0	.	60023856	60024497	0	1	641	0
chr14	60041916	60043649	NEC_from_H9.36410	0	.	60041916	60043649	0	1	1733	0
chr14	60051604	60051937	A549_Myers.37537	0	.	60051604	60051937	0	1	333	0
chr14	60052275	60052895	melanoma_Garraway_short_term_cultures.32323	0	.	60052275	60052895	0	1	620	0
chr14	60138522	60139422	prostate_carcinoma.47598	0	.	60138522	60139422	0	1	900	0
chr14	60138546	60139063	ENST00000472322	0	-	60138546	60139063	0	1	517	0
chr14	60138616	60139004	ENST00000489560	0	-	60138616	60139004	0	1	388	0
chr14	60139474	60140849	prostate_carcinoma.47601	0	.	60139474	60140849	0	1	1375	0
chr14	60178037	60179135	Rinn_00022761	0	-	60178037	60179135	0	2	162,565	0,533
chr14	60215850	60216780	REMC_MyoepithelialBreast.45781	0	.	60215850	60216780	0	1	930	0
chr14	60222995	60225766	REMC_MyoepithelialBreast.45785	0	.	60222995	60225766	0	1	2771	0
chr14	60223281	60225414	REMC_LuminalBreast.48437	0	.	60223281	60225414	0	1	2133	0
chr14	60230548	60232718	REMC_MyoepithelialBreast.45787	0	.	60230548	60232718	0	1	2170	0
chr14	60231523	60232698	REMC_BreastStem.24877	0	.	60231523	60232698	0	1	1175	0
chr14	60232827	60238644	REMC_MyoepithelialBreast.45788	0	.	60232827	60238644	0	1	5817	0
chr14	60234134	60237614	REMC_LuminalBreast.48442	0	.	60234134	60237614	0	1	3480	0
chr14	60236286	60238007	REMC_BreastStem.24879	0	.	60236286	60238007	0	1	1721	0
chr14	60636818	60638087	REMC_LuminalBreast.48475	0	.	60636818	60638087	0	1	1269	0
chr14	60640426	60640899	A549_Myers.37583	0	.	60640426	60640899	0	1	473	0
chr14	60643787	60644822	B_Cells_Pritchard.1683283	0	.	60643787	60644822	0	1	1035	0
chr14	60644197	60644887	prostate_carcinoma.47654	0	.	60644197	60644887	0	1	690	0
chr14	60656358	60657421	REMC_BreastStem.24909	0	.	60656358	60657421	0	1	1063	0
chr14	60658501	60659309	prostate_carcinoma.47658	0	.	60658501	60659309	0	1	808	0
chr14	60715669	60716171	B_Cells_Pritchard.1683497	0	.	60715669	60716171	0	1	502	0
chr14	60753932	60797025	pHIT000024094	0	-	60753932	60797025	0	7	208,151,118,198,122,53,14	0,2712,27130,30401,34724,35996,43079
chr14	60810054	60812689	REMC_LuminalBreast.48476	0	.	60810054	60812689	0	1	2635	0
chr14	60824867	60827781	REMC_LuminalBreast.48571	0	.	60824867	60827781	0	1	2914	0
chr14	60831148	60833349	CD4_Plagnol_resting.29687	0	.	60831148	60833349	0	1	2201	0
chr14	60831183	60831507	prostate_normal.27845	0	.	60831183	60831507	0	1	324	0
chr14	60831186	60832344	MDAMB468_Thompson.11800	0	.	60831186	60832344	0	1	1158	0
chr14	60831186	60833071	CD4_Plagnol_activated.31007	0	.	60831186	60833071	0	1	1885	0
chr14	60831188	60831706	BT474_Burge_Thompson.15792	0	.	60831188	60831706	0	1	518	0
chr14	60839915	60843214	CD4_Plagnol_activated.31012	0	.	60839915	60843214	0	1	3299	0
chr14	60841811	60845188	REMC_LuminalBreast.48573	0	.	60841811	60845188	0	1	3377	0
chr14	60842535	60843271	CD4_Plagnol_resting.29692	0	.	60842535	60843271	0	1	736	0
chr14	60842536	60843193	prostate_carcinoma.47672	0	.	60842536	60843193	0	1	657	0
chr14	60842616	60843413	REMC_MyoepithelialBreast.45830	0	.	60842616	60843413	0	1	797	0
chr14	60845780	60846150	B_cells_Cheung.95243	0	.	60845780	60846150	0	1	370	0
chr14	60845871	60847709	REMC_MyoepithelialBreast.45831	0	.	60845871	60847709	0	1	1838	0
chr14	60846386	60846768	CD4_Plagnol_activated.31013	0	.	60846386	60846768	0	1	382	0
chr14	61092949	61098878	khalil_718	0	.	61092949	61098878	0	4	491,318,1719,274	0,878,2438,5655
chr14	61093832	61096396	CD4_Plagnol_activated.31127	0	.	61093832	61096396	0	1	2564	0
chr14	61095019	61096992	HepG2_Caltech_ENCODE.17591	0	.	61095019	61096992	0	1	1973	0
chr14	61095061	61096233	REMC_LuminalBreast.48578	0	.	61095061	61096233	0	1	1172	0
chr14	61095729	61096941	prostate_carcinoma.47735	0	.	61095729	61096941	0	1	1212	0
chr14	61095901	61096251	A549_Myers.37609	0	.	61095901	61096251	0	1	350	0
chr14	61097543	61098742	B_cells_Cheung.95280	0	.	61097543	61098742	0	1	1199	0
chr14	61097649	61098339	prostate_normal.27873	0	.	61097649	61098339	0	1	690	0
chr14	61098097	61099022	CD4_Plagnol_activated.31129	0	.	61098097	61099022	0	1	925	0
chr14	61098742	61099397	B_cells_Cheung.95281	0	.	61098742	61099397	0	1	655	0
chr14	61144492	61144833	A549_Myers.37614	0	.	61144492	61144833	0	1	341	0
chr14	61144583	61145067	HeLa_polyA-_Chen.9329	0	.	61144583	61145067	0	1	484	0
chr14	61193863	61194211	B_cells_Cheung.95297	0	.	61193863	61194211	0	1	348	0
chr14	61195088	61196440	REMC_LuminalBreast.48585	0	.	61195088	61196440	0	1	1352	0
chr14	61195093	61197101	HeLa_polyA+_Chen.17507	0	.	61195093	61197101	0	1	2008	0
chr14	61196495	61198549	REMC_LuminalBreast.48586	0	.	61196495	61198549	0	1	2054	0
chr14	61197747	61198262	CD4_Plagnol_resting.29630	0	.	61197747	61198262	0	1	515	0
chr14	61197757	61198460	B_cells_Cheung.95308	0	.	61197757	61198460	0	1	703	0
chr14	61197769	61198306	B_Cells_Pritchard.1684777	0	.	61197769	61198306	0	1	537	0
chr14	61217167	61218889	B_Cells_Pritchard.1684857	0	.	61217167	61218889	0	1	1722	0
chr14	61217450	61218015	BT20_Thompson.10465	0	.	61217450	61218015	0	1	565	0
chr14	61286913	61287966	CD4_Plagnol_activated.30535	0	.	61286913	61287966	0	1	1053	0
chr14	61287298	61287731	brain_AmbionMAQC.21086	0	.	61287298	61287731	0	1	433	0
chr14	61287322	61287679	HeLa_polyA-_Chen.9322	0	.	61287322	61287679	0	1	357	0
chr14	61287480	61287989	A549_Myers.37620	0	.	61287480	61287989	0	1	509	0
chr14	61348715	61349144	A549_Myers.37625	0	.	61348715	61349144	0	1	429	0
chr14	61349285	61349738	A549_Myers.37626	0	.	61349285	61349738	0	1	453	0
chr14	61667727	61670654	HIT000045253	0	+	61667727	61670654	0	1	2927	0
chr14	61667813	61668815	HIT000391052	0	+	61667813	61668815	0	1	1002	0
chr14	62659410	62659936	melanoma_Garraway_short_term_cultures.32407	0	.	62659410	62659936	0	1	526	0
chr14	62659485	62659933	H1_polyA+.55741	0	.	62659485	62659933	0	1	448	0
chr14	62659488	62660008	B_Cells_Pritchard.1687663	0	.	62659488	62660008	0	1	520	0
chr14	62659488	62659927	K562.21923	0	.	62659488	62659927	0	1	439	0
chr14	62659492	62659886	MIP101.32855	0	.	62659492	62659886	0	1	394	0
chr14	62659495	62659925	HepG2_Caltech_ENCODE.17600	0	.	62659495	62659925	0	1	430	0
chr14	62659497	62659919	H9_polyA+.21975	0	.	62659497	62659919	0	1	422	0
chr14	62659515	62659901	B_cells_Cheung.95337	0	.	62659515	62659901	0	1	386	0
chr14	62659523	62659880	prostate_carcinoma.47781	0	.	62659523	62659880	0	1	357	0
chr14	62659526	62659880	CD4_Plagnol_activated.30547	0	.	62659526	62659880	0	1	354	0
chr14	62659544	62659919	HeLa_polyA+_Chen.17554	0	.	62659544	62659919	0	1	375	0
chr14	62835685	62837326	REMC_LuminalBreast.48645	0	.	62835685	62837326	0	1	1641	0
chr14	62835763	62836801	REMC_MyoepithelialBreast.46014	0	.	62835763	62836801	0	1	1038	0
chr14	63123706	63126607	REMC_LuminalBreast.48715	0	.	63123706	63126607	0	1	2901	0
chr14	63127894	63128216	CD4_Plagnol_activated.30564	0	.	63127894	63128216	0	1	322	0
chr14	63127894	63128212	B_cells_Cheung.95414	0	.	63127894	63128212	0	1	318	0
chr14	63127902	63128924	B_Cells_Pritchard.1688921	0	.	63127902	63128924	0	1	1022	0
chr14	63181756	63185280	B_cells_Cheung.95463	0	.	63181756	63185280	0	1	3524	0
chr14	63190871	63193865	REMC_MyoepithelialBreast.46192	0	.	63190871	63193865	0	1	2994	0
chr14	63192022	63194060	B_cells_Cheung.95469	0	.	63192022	63194060	0	1	2038	0
chr14	63192127	63194061	H1_polyA+.55914	0	.	63192127	63194061	0	1	1934	0
chr14	63192441	63193955	MIP101.32900	0	.	63192441	63193955	0	1	1514	0
chr14	63192450	63193935	REMC_BreastStem.24998	0	.	63192450	63193935	0	1	1485	0
chr14	63192612	63193894	melanoma_Garraway_short_term_cultures.32437	0	.	63192612	63193894	0	1	1282	0
chr14	63192672	63193939	prostate_carcinoma.47826	0	.	63192672	63193939	0	1	1267	0
chr14	63193102	63193898	K562.21954	0	.	63193102	63193898	0	1	796	0
chr14	63195847	63202562	REMC_LuminalBreast.48738	0	.	63195847	63202562	0	1	6715	0
chr14	63195863	63196619	B_cells_Cheung.95472	0	.	63195863	63196619	0	1	756	0
chr14	63195899	63197733	REMC_BreastStem.24999	0	.	63195899	63197733	0	1	1834	0
chr14	63195968	63196602	B_Cells_Pritchard.1689711	0	+	63195968	63196602	0	1	634	0
chr14	63195978	63197727	REMC_MyoepithelialBreast.46193	0	.	63195978	63197727	0	1	1749	0
chr14	63197937	63202586	REMC_MyoepithelialBreast.46187	0	.	63197937	63202586	0	1	4649	0
chr14	63198227	63202249	B_cells_Cheung.95474	0	.	63198227	63202249	0	1	4022	0
chr14	63198506	63202300	REMC_BreastStem.25001	0	.	63198506	63202300	0	1	3794	0
chr14	63198720	63199735	MIP101.32903	0	.	63198720	63199735	0	1	1015	0
chr14	63198723	63199833	prostate_carcinoma.47831	0	.	63198723	63199833	0	1	1110	0
chr14	63198815	63202061	H1_polyA+.55897	0	.	63198815	63202061	0	1	3246	0
chr14	63198996	63216421	B_Cells_Pritchard.1689723	0	-	63198996	63216421	0	4	1597,481,103,423	0,2073,11560,17002
chr14	63199420	63199800	prostate_normal.27943	0	.	63199420	63199800	0	1	380	0
chr14	63199559	63201054	HepG2_Caltech_ENCODE.17618	0	.	63199559	63201054	0	1	1495	0
chr14	63199838	63202036	MIP101.32891	0	.	63199838	63202036	0	1	2198	0
chr14	63199884	63202011	prostate_carcinoma.47827	0	.	63199884	63202011	0	1	2127	0
chr14	63199899	63201689	prostate_normal.27944	0	.	63199899	63201689	0	1	1790	0
chr14	63200025	63201771	melanoma_Garraway_short_term_cultures.32439	0	.	63200025	63201771	0	1	1746	0
chr14	63200181	63200660	A549_Myers.37653	0	.	63200181	63200660	0	1	479	0
chr14	63212527	63215317	REMC_BreastStem.25004	0	.	63212527	63215317	0	1	2790	0
chr14	63212572	63214138	B_cells_Cheung.95485	0	.	63212572	63214138	0	1	1566	0
chr14	63917333	63919818	H1_polyA+.56038	0	.	63917333	63919818	0	1	2485	0
chr14	64014080	64016546	melanoma_Garraway_short_term_cultures.32514	0	.	64014080	64016546	0	1	2466	0
chr14	64014152	64015216	CD4_Snyder.38162	0	.	64014152	64015216	0	1	1064	0
chr14	64017544	64019802	HepG2_Caltech_ENCODE.17649	0	.	64017544	64019802	0	1	2258	0
chr14	64020441	64021145	H9_polyA+.22039	0	.	64020441	64021145	0	1	704	0
chr14	64020595	64021149	HeLa_polyA-_Chen.9372	0	.	64020595	64021149	0	1	554	0
chr14	64674074	64675175	MIP101.33041	0	.	64674074	64675175	0	1	1101	0
chr14	64707338	64707729	A549_Myers.37837	0	.	64707338	64707729	0	1	391	0
chr14	64740655	64744096	B_cells_Cheung.95871	0	.	64740655	64744096	0	1	3441	0
chr14	64752738	64753427	B_cells_Cheung.95882	0	.	64752738	64753427	0	1	689	0
chr14	64757800	64758341	B_cells_Cheung.95887	0	.	64757800	64758341	0	1	541	0
chr14	64757889	64758369	B_Cells_Pritchard.1693345	0	.	64757889	64758369	0	1	480	0
chr14	64760884	64761539	B_Cells_Pritchard.1693355	0	-	64760884	64761539	0	1	655	0
chr14	64761665	64763592	B_Cells_Pritchard.1693357	0	-	64761665	64763592	0	1	1927	0
chr14	64761684	64763553	B_cells_Cheung.95889	0	.	64761684	64763553	0	1	1869	0
chr14	64769330	64772188	B_cells_Cheung.95895	0	.	64769330	64772188	0	1	2858	0
chr14	64769779	64776955	B_Cells_Pritchard.1693377	0	-	64769779	64776955	0	5	1933,294,493,1829,1825	0,1983,3001,3501,5351
chr14	64772335	64776982	B_cells_Cheung.95896	0	.	64772335	64776982	0	1	4647	0
chr14	64773437	64774058	BT474_Burge_Thompson.15837	0	.	64773437	64774058	0	1	621	0
chr14	64777534	64778323	B_cells_Cheung.95898	0	.	64777534	64778323	0	1	789	0
chr14	64777544	64778295	B_Cells_Pritchard.1693389	0	.	64777544	64778295	0	1	751	0
chr14	64778375	64781619	B_cells_Cheung.95899	0	.	64778375	64781619	0	1	3244	0
chr14	64778508	64794515	B_Cells_Pritchard.1693393	0	-	64778508	64794515	0	3	3099,1554,2349	0,7285,13658
chr14	64781839	64782662	BT474_Burge_Thompson.15838	0	.	64781839	64782662	0	1	823	0
chr14	64781890	64784199	B_Cells_Pritchard.1693397	0	+	64781890	64784199	0	2	788,91	0,2218
chr14	64785761	64787382	B_cells_Cheung.98222	0	.	64785761	64787382	0	1	1621	0
chr14	64787497	64791063	B_Cells_Pritchard.1693413	0	-	64787497	64791063	0	2	1165,235	0,3331
chr14	64787578	64789112	B_cells_Cheung.98223	0	.	64787578	64789112	0	1	1534	0
chr14	64787902	64789858	REMC_LuminalBreast.48878	0	.	64787902	64789858	0	1	1956	0
chr14	64789212	64789954	B_cells_Cheung.98224	0	.	64789212	64789954	0	1	742	0
chr14	64791349	64795392	B_cells_Cheung.98226	0	.	64791349	64795392	0	4	895,923,1477,611	0,959,1882,3432
chr14	64795542	64799036	B_cells_Cheung.98227	0	.	64795542	64799036	0	1	3494	0
chr14	64818024	64820430	B_cells_Cheung.98232	0	.	64818024	64820430	0	1	2406	0
chr14	64836951	64841240	B_Cells_Pritchard.1698541	0	-	64836951	64841240	0	1	4289	0
chr14	64853260	64854201	B_cells_Cheung.98241	0	.	64853260	64854201	0	1	941	0
chr14	64853266	64867696	B_Cells_Pritchard.1693511	0	-	64853266	64867696	0	9	2287,1088,1107,432,512,643,203,1036,2862	0,2385,4480,6376,6960,7607,8937,10316,11568
chr14	64873995	64894648	B_Cells_Pritchard.1693535	0	+	64873995	64894648	0	4	297,64,3463,5737	0,7013,8936,14916
chr14	64874550	64878174	B_cells_Cheung.98242	0	.	64874550	64878174	0	1	3624	0
chr14	64875942	64876875	B_Cells_Pritchard.1693549	0	+	64875942	64876875	0	1	933	0
chr14	64878325	64882441	B_cells_Cheung.98243	0	.	64878325	64882441	0	1	4116	0
chr14	64882942	64894771	B_cells_Cheung.98244	0	.	64882942	64894771	0	2	3480,6950	0,4879
chr14	64894911	64897587	B_cells_Cheung.98245	0	.	64894911	64897587	0	1	2676	0
chr14	64894973	64896426	B_Cells_Pritchard.1693585	0	.	64894973	64896426	0	1	1453	0
chr14	64907154	64908903	B_cells_Cheung.98250	0	.	64907154	64908903	0	1	1749	0
chr14	64909261	64911084	B_Cells_Pritchard.1693621	0	.	64909261	64911084	0	1	1823	0
chr14	64922709	64923111	B_Cells_Pritchard.1693647	0	-	64922709	64923111	0	1	402	0
chr14	64929594	64930198	B_Cells_Pritchard.1693681	0	-	64929594	64930198	0	1	604	0
chr14	65291228	65293413	B_Cells_Pritchard.1694827	0	.	65291228	65293413	0	1	2185	0
chr14	65291730	65293448	B_cells_Cheung.95924	0	.	65291730	65293448	0	1	1718	0
chr14	65291967	65293625	REMC_MyoepithelialBreast.46365	0	.	65291967	65293625	0	1	1658	0
chr14	65307427	65307854	REMC_MyoepithelialBreast.46370	0	.	65307427	65307854	0	1	427	0
chr14	65327837	65328343	A549_Myers.37852	0	.	65327837	65328343	0	1	506	0
chr14	65327865	65328293	B_Cells_Pritchard.1694981	0	.	65327865	65328293	0	1	428	0
chr14	65638260	65639087	B_Cells_Pritchard.1695857	0	.	65638260	65639087	0	1	827	0
chr14	65648001	65659193	Rinn_00023004	0	+	65648001	65659193	0	3	241,148,84	0,6376,11108
chr14	65648011	65666461	Rinn_00022532	0	+	65648011	65666461	0	9	231,148,240,171,165,122,44,238,2237	0,6366,11098,11602,12119,14227,14925,15424,16213
chr14	65648011	65654596	Rinn_00023005	0	+	65648011	65654596	0	2	231,219	0,6366
chr14	65664761	65665158	testes_Burge.25129	0	.	65664761	65665158	0	1	397	0
chr14	65760968	65761555	B_cells_Cheung.95955	0	.	65760968	65761555	0	1	587	0
chr14	65775873	65776563	B_cells_Cheung.95959	0	.	65775873	65776563	0	1	690	0
chr14	65779784	65780326	B_cells_Cheung.95962	0	.	65779784	65780326	0	1	542	0
chr14	65793205	65793626	MIP101.33066	0	.	65793205	65793626	0	1	421	0
chr14	65793218	65793611	prostate_carcinoma.48004	0	.	65793218	65793611	0	1	393	0
chr14	65803562	65805634	MIP101.33067	0	.	65803562	65805634	0	1	2072	0
chr14	65804385	65805624	B_cells_Cheung.95970	0	.	65804385	65805624	0	1	1239	0
chr14	65804822	65805632	prostate_carcinoma.48006	0	.	65804822	65805632	0	1	810	0
chr14	65822833	65823673	B_Cells_Pritchard.1696429	0	.	65822833	65823673	0	1	840	0
chr14	65886088	65886501	B_cells_Cheung.95991	0	.	65886088	65886501	0	1	413	0
chr14	65891374	65892786	B_Cells_Pritchard.1696659	0	.	65891374	65892786	0	1	1412	0
chr14	65891504	65894547	B_cells_Cheung.95992	0	.	65891504	65894547	0	1	3043	0
chr14	65892977	65893905	B_Cells_Pritchard.1696661	0	.	65892977	65893905	0	1	928	0
chr14	65897983	65902977	B_cells_Cheung.95994	0	.	65897983	65902977	0	1	4994	0
chr14	65899523	65900477	B_Cells_Pritchard.1696679	0	-	65899523	65900477	0	1	954	0
chr14	65916403	65916942	B_cells_Cheung.96010	0	.	65916403	65916942	0	1	539	0
chr14	65926352	65926804	B_cells_Cheung.96013	0	.	65926352	65926804	0	1	452	0
chr14	65929669	65930276	B_cells_Cheung.96014	0	.	65929669	65930276	0	1	607	0
chr14	65940864	65942292	B_Cells_Pritchard.1696821	0	.	65940864	65942292	0	1	1428	0
chr14	65944160	65944810	B_cells_Cheung.96022	0	.	65944160	65944810	0	1	650	0
chr14	65958167	65961162	B_cells_Cheung.96028	0	.	65958167	65961162	0	1	2995	0
chr14	65958243	65960294	B_Cells_Pritchard.1696857	0	.	65958243	65960294	0	1	2051	0
chr14	65978737	65979139	B_Cells_Pritchard.1696925	0	.	65978737	65979139	0	1	402	0
chr14	65978752	65979224	prostate_carcinoma.48008	0	.	65978752	65979224	0	1	472	0
chr14	66019052	66020564	B_cells_Cheung.96063	0	.	66019052	66020564	0	1	1512	0
chr14	66019261	66020464	prostate_carcinoma.48011	0	.	66019261	66020464	0	1	1203	0
chr14	66019863	66020479	MIP101.33075	0	.	66019863	66020479	0	1	616	0
chr14	66038553	66040596	B_cells_Cheung.96079	0	.	66038553	66040596	0	1	2043	0
chr14	66722739	66724721	B_Cells_Pritchard.1698941	0	.	66722739	66724721	0	1	1982	0
chr14	66767025	66768239	MIP101.33169	0	.	66767025	66768239	0	1	1214	0
chr14	66769614	66771053	REMC_LuminalBreast.50231	0	.	66769614	66771053	0	1	1439	0
chr14	68273021	68273564	B_cells_Cheung.97043	0	.	68273021	68273564	0	1	543	0
chr14	68284956	68285414	A549_Myers.38026	0	.	68284956	68285414	0	1	458	0
chr14	68307837	68309916	REMC_LuminalBreast.49448	0	.	68307837	68309916	0	1	2079	0
chr14	68310876	68312356	REMC_LuminalBreast.49449	0	.	68310876	68312356	0	1	1480	0
chr14	68317503	68318671	REMC_LuminalBreast.49450	0	.	68317503	68318671	0	1	1168	0
chr14	68317656	68318440	CD4_Snyder.38564	0	.	68317656	68318440	0	1	784	0
chr14	68317865	68318486	A549_Myers.38028	0	.	68317865	68318486	0	1	621	0
chr14	68322044	68322983	REMC_LuminalBreast.49451	0	.	68322044	68322983	0	1	939	0
chr14	68336094	68352823	REMC_LuminalBreast.51660	0	-	68336094	68352823	0	2	2839,9841	0,6888
chr14	68337550	68346389	B_Cells_Pritchard.1703465	0	+	68337550	68346389	0	2	1678,3428	0,5411
chr14	68339258	68352823	REMC_LuminalBreast.51659	0	.	68339258	68352823	0	1	13565	0
chr14	68341168	68342589	melanoma_Garraway_short_term_cultures.32867	0	.	68341168	68342589	0	1	1421	0
chr14	68341966	68342609	B_cells_Cheung.97066	0	.	68341966	68342609	0	1	643	0
chr14	68342871	68345844	B_cells_Cheung.97067	0	.	68342871	68345844	0	1	2973	0
chr14	68342872	68344114	melanoma_Garraway_short_term_cultures.32868	0	.	68342872	68344114	0	1	1242	0
chr14	68343767	68345633	MIP101.33402	0	.	68343767	68345633	0	1	1866	0
chr14	68343906	68361045	khalil_724	0	.	68343906	68361045	0	12	149,256,224,771,2581,204,1646,196,667,209,173,375	0,473,1392,3319,4179,7170,7762,10110,12397,13950,14654,16764
chr14	68343917	68345181	BT474_Burge_Thompson.15982	0	.	68343917	68345181	0	1	1264	0
chr14	68344775	68345518	prostate_carcinoma.48363	0	.	68344775	68345518	0	1	743	0
chr14	68347239	68348451	prostate_carcinoma.48365	0	.	68347239	68348451	0	1	1212	0
chr14	68348576	68353836	B_cells_Cheung.97068	0	.	68348576	68353836	0	1	5260	0
chr14	68348600	68355412	B_Cells_Pritchard.1703505	0	.	68348600	68355412	0	1	6812	0
chr14	68348624	68353715	prostate_carcinoma.48366	0	.	68348624	68353715	0	1	5091	0
chr14	68349145	68350458	MIP101.33405	0	.	68349145	68350458	0	1	1313	0
chr14	68350513	68353456	MIP101.33406	0	.	68350513	68353456	0	1	2943	0
chr14	68351458	68353472	prostate_normal.28161	0	.	68351458	68353472	0	1	2014	0
chr14	68351540	68353656	BT20_Thompson.10446	0	.	68351540	68353656	0	1	2116	0
chr14	68351733	68353283	BT474_Burge_Thompson.15983	0	.	68351733	68353283	0	1	1550	0
chr14	68351785	68353470	MCF7_Burge_Thompson.14486	0	.	68351785	68353470	0	1	1685	0
chr14	68351860	68353184	CD4_Plagnol_activated.30940	0	.	68351860	68353184	0	1	1324	0
chr14	68351885	68353026	T47D_Burge_Thompson.13896	0	.	68351885	68353026	0	1	1141	0
chr14	68351933	68352458	HeLa_polyA+_Chen.17682	0	.	68351933	68352458	0	1	525	0
chr14	68351942	68353233	MCF10A_Thompson.10603	0	.	68351942	68353233	0	1	1291	0
chr14	68352725	68353414	A549_Myers.38035	0	.	68352725	68353414	0	1	689	0
chr14	68353005	68355409	REMC_LuminalBreast.51661	0	.	68353005	68355409	0	1	2404	0
chr14	68355529	68366100	REMC_LuminalBreast.51662	0	.	68355529	68366100	0	1	10571	0
chr14	68355571	68361761	BT20_Thompson.10447	0	.	68355571	68361761	0	1	6190	0
chr14	68355842	68361764	MCF10A_Thompson.11053	0	.	68355842	68361764	0	1	5922	0
chr14	68356015	68358819	B_cells_Cheung.97072	0	.	68356015	68358819	0	1	2804	0
chr14	68356203	68361852	MIP101.33407	0	.	68356203	68361852	0	1	5649	0
chr14	68356206	68360280	prostate_carcinoma.48367	0	.	68356206	68360280	0	1	4074	0
chr14	68356297	68357509	melanoma_Garraway_short_term_cultures.32871	0	.	68356297	68357509	0	1	1212	0
chr14	68356548	68357040	A549_Myers.38036	0	.	68356548	68357040	0	1	492	0
chr14	68357029	68358079	H1_polyA+.56448	0	.	68357029	68358079	0	1	1050	0
chr14	68357190	68358062	REMC_BreastStem.25380	0	.	68357190	68358062	0	1	872	0
chr14	68358134	68359671	H1_polyA+.56449	0	.	68358134	68359671	0	1	1537	0
chr14	68358420	68361284	prostate_normal.28164	0	.	68358420	68361284	0	1	2864	0
chr14	68359112	68359620	B_Cells_Pritchard.1703491	0	.	68359112	68359620	0	1	508	0
chr14	68359709	68361858	melanoma_Garraway_short_term_cultures.32873	0	.	68359709	68361858	0	1	2149	0
chr14	68359747	68361418	B_Cells_Pritchard.1703493	0	.	68359747	68361418	0	1	1671	0
chr14	68359880	68361431	B_cells_Cheung.97074	0	.	68359880	68361431	0	1	1551	0
chr14	68359958	68361142	REMC_BreastStem.25381	0	.	68359958	68361142	0	1	1184	0
chr14	68360280	68361703	prostate_carcinoma.48368	0	.	68360280	68361703	0	1	1423	0
chr14	68360700	68361586	H1_polyA+.56450	0	.	68360700	68361586	0	1	886	0
chr14	68367589	68373932	REMC_BreastStem.25383	0	.	68367589	68373932	0	1	6343	0
chr14	68369933	68371337	melanoma_Garraway_short_term_cultures.32876	0	.	68369933	68371337	0	1	1404	0
chr14	68374084	68376026	REMC_BreastStem.25384	0	.	68374084	68376026	0	1	1942	0
chr14	68376193	68377546	REMC_BreastStem.25385	0	.	68376193	68377546	0	1	1353	0
chr14	68382595	68384295	REMC_LuminalBreast.51671	0	.	68382595	68384295	0	1	1700	0
chr14	68384462	68389653	REMC_LuminalBreast.51672	0	.	68384462	68389653	0	1	5191	0
chr14	68389987	68396216	REMC_MyoepithelialBreast.47810	0	.	68389987	68396216	0	1	6229	0
chr14	68389998	68396196	REMC_LuminalBreast.51673	0	.	68389998	68396196	0	1	6198	0
chr14	68391539	68392355	prostate_carcinoma.48370	0	.	68391539	68392355	0	1	816	0
chr14	68400392	68401901	melanoma_Garraway_short_term_cultures.32888	0	.	68400392	68401901	0	1	1509	0
chr14	68400535	68400929	A549_Myers.38251	0	.	68400535	68400929	0	1	394	0
chr14	68401084	68401627	A549_Myers.38252	0	.	68401084	68401627	0	1	543	0
chr14	68516238	68518018	Rinn_00022542	0	+	68516238	68518018	0	2	419,324	0,1456
chr14	68521236	68522299	REMC_MyoepithelialBreast.47816	0	.	68521236	68522299	0	1	1063	0
chr14	68521241	68522257	melanoma_Garraway_short_term_cultures.32920	0	.	68521241	68522257	0	1	1016	0
chr14	68521244	68522417	REMC_LuminalBreast.49511	0	.	68521244	68522417	0	1	1173	0
chr14	68521603	68522255	H1_polyA+.57043	0	.	68521603	68522255	0	1	652	0
chr14	68528005	68529015	REMC_MyoepithelialBreast.47821	0	.	68528005	68529015	0	1	1010	0
chr14	68528054	68529316	REMC_LuminalBreast.49514	0	.	68528054	68529316	0	1	1262	0
chr14	68530537	68531793	REMC_LuminalBreast.49515	0	.	68530537	68531793	0	1	1256	0
chr14	68539379	68540149	B_Cells_Pritchard.1703941	0	.	68539379	68540149	0	1	770	0
chr14	68539381	68540555	BT474_Burge_Thompson.15988	0	.	68539381	68540555	0	1	1174	0
chr14	68539665	68541258	REMC_MyoepithelialBreast.47824	0	.	68539665	68541258	0	1	1593	0
chr14	68542495	68542959	BT474_Burge_Thompson.15989	0	.	68542495	68542959	0	1	464	0
chr14	68573006	68577612	REMC_MyoepithelialBreast.46730	0	.	68573006	68577612	0	1	4606	0
chr14	68573922	68576553	REMC_BreastStem.25286	0	.	68573922	68576553	0	1	2631	0
chr14	68577717	68585839	REMC_MyoepithelialBreast.46731	0	.	68577717	68585839	0	1	8122	0
chr14	68577955	68578818	REMC_BreastStem.25287	0	.	68577955	68578818	0	1	863	0
chr14	68578120	68578787	CD4_Plagnol_resting.30085	0	.	68578120	68578787	0	1	667	0
chr14	68578262	68578811	B_cells_Cheung.97089	0	.	68578262	68578811	0	1	549	0
chr14	68578344	68578928	B_Cells_Pritchard.1704043	0	.	68578344	68578928	0	1	584	0
chr14	68782459	68785908	H1_polyA+.56589	0	.	68782459	68785908	0	1	3449	0
chr14	68782504	68783304	MIP101.33472	0	.	68782504	68783304	0	1	800	0
chr14	68782516	68784583	REMC_BreastStem.25402	0	.	68782516	68784583	0	1	2067	0
chr14	68893304	68896274	prostate_carcinoma.48419	0	.	68893304	68896274	0	1	2970	0
chr14	68893475	68895778	HIT000021843	0	+	68893475	68895778	0	1	2303	0
chr14	68893506	68895688	B_Cells_Pritchard.1710705	0	+	68893506	68895688	0	1	2182	0
chr14	68894073	68896264	REMC_BreastStem.25407	0	.	68894073	68896264	0	1	2191	0
chr14	68894570	68895324	B_cells_Cheung.97144	0	.	68894570	68895324	0	1	754	0
chr14	68894713	68895766	brain_AmbionMAQC.21301	0	.	68894713	68895766	0	1	1053	0
chr14	68898914	68900473	REMC_BreastStem.25409	0	.	68898914	68900473	0	1	1559	0
chr14	68906027	68908969	REMC_BreastStem.25413	0	-	68906027	68908969	0	2	872,410	0,2532
chr14	69006951	69007388	REMC_LuminalBreast.49651	0	.	69006951	69007388	0	1	437	0
chr14	69007607	69009387	REMC_LuminalBreast.49652	0	.	69007607	69009387	0	1	1780	0
chr14	69007778	69009523	REMC_BreastStem.25439	0	.	69007778	69009523	0	1	1745	0
chr14	69007778	69016982	REMC_MyoepithelialBreast.46803	0	.	69007778	69016982	0	1	9204	0
chr14	69007884	69009120	MIP101.33499	0	.	69007884	69009120	0	1	1236	0
chr14	69008274	69009002	B_Cells_Pritchard.1705027	0	.	69008274	69009002	0	1	728	0
chr14	69008385	69008838	prostate_carcinoma.48437	0	.	69008385	69008838	0	1	453	0
chr14	69013541	69017106	REMC_LuminalBreast.49655	0	.	69013541	69017106	0	1	3565	0
chr14	69013930	69015849	REMC_BreastStem.25442	0	.	69013930	69015849	0	1	1919	0
chr14	69015759	69016578	B_cells_Cheung.97164	0	.	69015759	69016578	0	1	819	0
chr14	69016035	69016958	MIP101.33500	0	.	69016035	69016958	0	1	923	0
chr14	69017254	69020011	REMC_LuminalBreast.49656	0	.	69017254	69020011	0	1	2757	0
chr14	69017585	69019579	REMC_BreastStem.25444	0	.	69017585	69019579	0	1	1994	0
chr14	69017828	69019574	REMC_MyoepithelialBreast.46804	0	.	69017828	69019574	0	1	1746	0
chr14	69018593	69019164	B_cells_Cheung.97166	0	.	69018593	69019164	0	1	571	0
chr14	69018697	69019277	melanoma_Garraway_short_term_cultures.32948	0	.	69018697	69019277	0	1	580	0
chr14	69018793	69019270	B_Cells_Pritchard.1705061	0	+	69018793	69019270	0	1	477	0
chr14	69095876	69096604	H1_polyA+.56626	0	.	69095876	69096604	0	1	728	0
chr14	69101598	69105859	brain_AmbionMAQC.21320	0	.	69101598	69105859	0	1	4261	0
chr14	69101893	69102678	H9_polyA+.22200	0	.	69101893	69102678	0	1	785	0
chr14	69102909	69104456	H9_polyA+.22201	0	.	69102909	69104456	0	1	1547	0
chr14	69104542	69105248	H9_polyA+.22202	0	.	69104542	69105248	0	1	706	0
chr14	69122794	69124874	H1_polyA+.56631	0	.	69122794	69124874	0	1	2080	0
chr14	69129103	69130325	H1_polyA+.56633	0	.	69129103	69130325	0	1	1222	0
chr14	69138961	69140334	H1_polyA+.56634	0	.	69138961	69140334	0	1	1373	0
chr14	69139794	69140319	NEC_from_H9.36901	0	.	69139794	69140319	0	1	525	0
chr14	69254677	69255062	B_cells_Cheung.97184	0	.	69254677	69255062	0	1	385	0
chr14	69257387	69257711	B_Cells_Pritchard.1705707	0	.	69257387	69257711	0	1	324	0
chr14	69260751	69261987	REMC_BreastStem.25306	0	.	69260751	69261987	0	1	1236	0
chr14	69336692	69337495	B_Cells_Pritchard.1705897	0	.	69336692	69337495	0	1	803	0
chr14	69343346	69352416	B_Cells_Pritchard.1705917	0	+	69343346	69352416	0	6	98,309,83,1057,242,754	0,169,531,1785,7985,8316
chr14	69346619	69348668	B_Cells_Pritchard.1705931	0	-	69346619	69348668	0	1	2049	0
chr14	69347943	69350337	HepG2_Caltech_ENCODE.17781	0	.	69347943	69350337	0	1	2394	0
chr14	69347943	69352413	HepG2_Caltech_ENCODE.17780	0	+	69347943	69352413	0	2	997,814	0,3656
chr14	69348230	69353038	Rinn_00022543	0	+	69348230	69353038	0	2	238,1305	0,3503
chr14	69350412	69352413	HepG2_Caltech_ENCODE.17782	0	.	69350412	69352413	0	1	2001	0
chr14	69351790	69352409	B_cells_Cheung.97216	0	.	69351790	69352409	0	1	619	0
chr14	69351815	69352360	CD4_Plagnol_activated.31110	0	.	69351815	69352360	0	1	545	0
chr14	69351817	69352439	MeI_Garraway.8662	0	.	69351817	69352439	0	1	622	0
chr14	69351942	69352425	HIT000071469	0	+	69351942	69352425	0	1	483	0
chr14	69354158	69357909	REMC_LuminalBreast.51105	0	.	69354158	69357909	0	1	3751	0
chr14	69375381	69377829	REMC_LuminalBreast.51108	0	.	69375381	69377829	0	1	2448	0
chr14	69375937	69376416	BT474_Burge_Thompson.16028	0	.	69375937	69376416	0	1	479	0
chr14	69740888	69743035	B_Cells_Pritchard.1706823	0	.	69740888	69743035	0	1	2147	0
chr14	69770520	69771489	B_Cells_Pritchard.1706915	0	.	69770520	69771489	0	1	969	0
chr14	69770784	69771314	CD4_Plagnol_activated.31114	0	.	69770784	69771314	0	1	530	0
chr14	69770790	69771339	HepG2_Caltech_ENCODE.17799	0	.	69770790	69771339	0	1	549	0
chr14	69770802	69771316	CD4_Plagnol_resting.30232	0	.	69770802	69771316	0	1	514	0
chr14	69770851	69771336	K562.22165	0	.	69770851	69771336	0	1	485	0
chr14	69770874	69771323	MeI_Garraway.8663	0	.	69770874	69771323	0	1	449	0
chr14	69770890	69771314	MIP101.33519	0	.	69770890	69771314	0	1	424	0
chr14	69770903	69771342	H1_polyA+.56652	0	.	69770903	69771342	0	1	439	0
chr14	69770997	69771310	prostate_carcinoma.48493	0	.	69770997	69771310	0	1	313	0
chr14	69773815	69774589	B_Cells_Pritchard.1706923	0	.	69773815	69774589	0	1	774	0
chr14	70073272	70074248	B_Cells_Pritchard.1707981	0	.	70073272	70074248	0	1	976	0
chr14	70073340	70074359	REMC_BreastStem.25347	0	.	70073340	70074359	0	1	1019	0
chr14	70073469	70074668	H1_polyA+.56701	0	.	70073469	70074668	0	1	1199	0
chr14	70073479	70074242	REMC_LuminalBreast.49739	0	.	70073479	70074242	0	1	763	0
chr14	70073484	70075323	B_cells_Cheung.97353	0	.	70073484	70075323	0	1	1839	0
chr14	70073489	70074223	brain_AmbionMAQC.21349	0	.	70073489	70074223	0	1	734	0
chr14	70073703	70075479	REMC_MyoepithelialBreast.46899	0	.	70073703	70075479	0	1	1776	0
chr14	70074347	70074671	BT474_Burge_Thompson.16037	0	.	70074347	70074671	0	1	324	0
chr14	70079411	70083820	REMC_LuminalBreast.49742	0	.	70079411	70083820	0	1	4409	0
chr14	70079437	70080903	REMC_MyoepithelialBreast.46903	0	.	70079437	70080903	0	1	1466	0
chr14	70080790	70083787	H1_polyA+.56703	0	.	70080790	70083787	0	1	2997	0
chr14	70081151	70083739	REMC_BreastStem.25348	0	.	70081151	70083739	0	1	2588	0
chr14	70081329	70082750	REMC_MyoepithelialBreast.46904	0	.	70081329	70082750	0	1	1421	0
chr14	70091979	70110906	REMC_MyoepithelialBreast.46907	0	.	70091979	70110906	0	1	18927	0
chr14	70095795	70110950	REMC_LuminalBreast.49927	0	.	70095795	70110950	0	1	15155	0
chr14	70097635	70099158	REMC_BreastStem.25353	0	.	70097635	70099158	0	1	1523	0
chr14	70098236	70101209	H1_polyA+.56708	0	.	70098236	70101209	0	1	2973	0
chr14	70098478	70099215	B_cells_Cheung.97365	0	.	70098478	70099215	0	1	737	0
chr14	70099874	70110903	REMC_BreastStem.25355	0	.	70099874	70110903	0	1	11029	0
chr14	70100084	70101155	melanoma_Garraway_short_term_cultures.32973	0	.	70100084	70101155	0	1	1071	0
chr14	70102129	70110896	H1_polyA+.56709	0	.	70102129	70110896	0	1	8767	0
chr14	70113910	70114335	B_cells_Cheung.97379	0	.	70113910	70114335	0	1	425	0
chr14	70114266	70116455	REMC_BreastStem.25358	0	.	70114266	70116455	0	1	2189	0
chr14	70114981	70116109	B_cells_Cheung.97381	0	.	70114981	70116109	0	1	1128	0
chr14	70346204	70352345	BT20_Thompson.10490	0	+	70346204	70352345	0	2	940,765	0,5376
chr14	70346207	70352579	H1_polyA+.56779	0	+	70346207	70352579	0	2	937,999	0,5373
chr14	70346216	70352358	MCF7_Burge_Thompson.14542	0	+	70346216	70352358	0	2	919,778	0,5364
chr14	70346337	70351791	REMC_MyoepithelialBreast.46944	0	+	70346337	70351791	0	3	40,1582,211	0,57,5243
chr14	70348045	70349990	REMC_MyoepithelialBreast.46945	0	.	70348045	70349990	0	1	1945	0
chr14	70348571	70349991	A549_Myers.38200	0	.	70348571	70349991	0	3	391,341,221	0,797,1199
chr14	70348589	70349505	H9_polyA+.22251	0	.	70348589	70349505	0	1	916	0
chr14	70348645	70349989	prostate_carcinoma.48566	0	.	70348645	70349989	0	1	1344	0
chr14	70348682	70349436	BT474_Burge_Thompson.16043	0	.	70348682	70349436	0	1	754	0
chr14	70348985	70349492	NEC_from_H9.36994	0	.	70348985	70349492	0	1	507	0
chr14	70349081	70349998	MCF10A_Thompson.10637	0	.	70349081	70349998	0	1	917	0
chr14	70349942	70350411	brain_AmbionMAQC.21382	0	.	70349942	70350411	0	1	469	0
chr14	70353644	70353962	B_cells_Cheung.97473	0	.	70353644	70353962	0	1	318	0
chr14	70357938	70360696	B_Cells_Pritchard.1708621	0	-	70357938	70360696	0	2	936,408	0,2350
chr14	70357954	70359957	H1_polyA+.56783	0	.	70357954	70359957	0	1	2003	0
chr14	70358348	70358784	A549_Myers.38202	0	.	70358348	70358784	0	1	436	0
chr14	70358436	70358750	B_cells_Cheung.97477	0	.	70358436	70358750	0	1	314	0
chr14	70358816	70360721	REMC_MyoepithelialBreast.46949	0	.	70358816	70360721	0	1	1905	0
chr14	70359292	70361778	B_Cells_Pritchard.1708625	0	+	70359292	70361778	0	5	72,130,139,102,977	0,210,500,805,1509
chr14	70366204	70368355	H1_polyA+.56748	0	.	70366204	70368355	0	1	2151	0
chr14	70400290	70400870	B_Cells_Pritchard.1708743	0	.	70400290	70400870	0	1	580	0
chr14	70406514	70407066	B_Cells_Pritchard.1708765	0	.	70406514	70407066	0	1	552	0
chr14	70652956	70653908	CD4_Plagnol_activated.31170	0	.	70652956	70653908	0	1	952	0
chr14	70652976	70653844	CD4_Plagnol_resting.30282	0	.	70652976	70653844	0	1	868	0
chr14	70652985	70655075	REMC_LuminalBreast.49924	0	.	70652985	70655075	0	1	2090	0
chr14	70653009	70654090	REMC_BreastStem.25368	0	.	70653009	70654090	0	1	1081	0
chr14	70661386	70662008	REMC_MyoepithelialBreast.46986	0	.	70661386	70662008	0	1	622	0
chr14	70677594	70679723	HIT000022153	0	-	70677594	70679723	0	1	2129	0
chr14	70678049	70679729	melanoma_Garraway_short_term_cultures.33011	0	.	70678049	70679729	0	1	1680	0
chr14	70692149	70692542	B_Cells_Pritchard.1709083	0	.	70692149	70692542	0	1	393	0
chr14	70692874	70693992	B_Cells_Pritchard.1709085	0	.	70692874	70693992	0	1	1118	0
chr14	70746485	70827890	XR_079346	0	-	70746485	70827890	0	5	166,580,250,104,120	0,6279,70148,79636,81285
chr14	70749982	70754589	HIT000007719	0	-	70749982	70754589	0	1	4607	0
chr14	70751830	70752173	A549_Myers.38217	0	.	70751830	70752173	0	1	343	0
chr14	70752778	70827890	XR_078805	0	-	70752778	70827890	0	5	15,551,250,104,120	0,15,63855,73343,74992
chr14	70755569	70759194	HIT000046854	0	+	70755569	70759194	0	1	3625	0
chr14	70774196	70774587	B_Cells_Pritchard.1709469	0	.	70774196	70774587	0	1	391	0
chr14	70776970	70777631	B_Cells_Pritchard.1709477	0	.	70776970	70777631	0	1	661	0
chr14	70777033	70777569	B_cells_Cheung.97540	0	.	70777033	70777569	0	1	536	0
chr14	70831655	70858335	T47D_Burge_Thompson.13953	0	-	70831655	70858335	0	2	271,192	0,26488
chr14	70832458	70833139	prostate_carcinoma.48588	0	.	70832458	70833139	0	1	681	0
chr14	70833549	70834981	prostate_carcinoma.48589	0	.	70833549	70834981	0	1	1432	0
chr14	70843659	70857635	Rinn_00022786	0	-	70843659	70857635	0	4	174,820,99,992	0,3367,12266,12984
chr14	70843668	70858817	prostate_carcinoma.48591	0	-	70843668	70858817	0	3	165,122,674	0,3359,14475
chr14	70843802	70857698	H1_polyA+.56790	0	-	70843802	70857698	0	3	31,819,1054	0,3225,12842
chr14	70845006	70846125	prostate_carcinoma.48595	0	.	70845006	70846125	0	1	1119	0
chr14	70847466	70856791	Rinn_00023126	0	-	70847466	70856791	0	3	380,99,148	0,8459,9177
chr14	70850893	70852077	REMC_LuminalBreast.50107	0	.	70850893	70852077	0	1	1184	0
chr14	70850924	70853389	B_Cells_Pritchard.1709761	0	+	70850924	70853389	0	4	104,210,662,669	0,107,375,1796
chr14	70850932	70852065	B_cells_Cheung.97552	0	.	70850932	70852065	0	1	1133	0
chr14	70851030	70852047	H1_polyA+.56793	0	.	70851030	70852047	0	1	1017	0
chr14	70855502	70858429	MIP101.33621	0	.	70855502	70858429	0	1	2927	0
chr14	70855752	70857698	H1_polyA+.56789	0	.	70855752	70857698	0	1	1946	0
chr14	70855930	70858831	B_Cells_Pritchard.1709669	0	+	70855930	70858831	0	1	2901	0
chr14	70855968	70857051	testes_Burge.25351	0	-	70855968	70857051	0	2	56,407	0,676
chr14	70856376	70903974	REMC_MyoepithelialBreast.47203	0	.	70856376	70903974	0	1	47598	0
chr14	70856478	70857704	prostate_carcinoma.48599	0	.	70856478	70857704	0	1	1226	0
chr14	70856543	70857663	T47D_Burge_Thompson.13954	0	.	70856543	70857663	0	1	1120	0
chr14	70856646	70857663	T47D_Burge_Thompson.13955	0	+	70856646	70857663	0	2	327,72	0,945
chr14	70856670	70904642	REMC_LuminalBreast.50104	0	.	70856670	70904642	0	1	47972	0
chr14	70856743	70858531	HeLa_polyA+_Chen.17740	0	+	70856743	70858531	0	3	230,39,940	0,240,848
chr14	70856830	70857758	A549_Myers.38219	0	.	70856830	70857758	0	1	928	0
chr14	70856846	70857160	CD4_Snyder.38755	0	.	70856846	70857160	0	1	314	0
chr14	70856884	70857512	HepG2_Caltech_ENCODE.17819	0	.	70856884	70857512	0	1	628	0
chr14	70856900	70857724	MCF10A_Thompson.10631	0	.	70856900	70857724	0	1	824	0
chr14	70856912	70858043	CD4_Plagnol_activated.31174	0	.	70856912	70858043	0	1	1131	0
chr14	70857094	70857477	H9_polyA-_Chen.7135	0	.	70857094	70857477	0	1	383	0
chr14	70857097	70858531	HeLa_polyA+_Chen.17739	0	.	70857097	70858531	0	1	1434	0
chr14	70857188	70857662	MDAMB468_Thompson.11961	0	.	70857188	70857662	0	1	474	0
chr14	70857195	70857649	H9_polyA+.22260	0	.	70857195	70857649	0	1	454	0
chr14	70857285	70857669	MCF7_Burge_Thompson.14547	0	.	70857285	70857669	0	1	384	0
chr14	70857287	70857671	MDAMB231_Thompson.10950	0	.	70857287	70857671	0	1	384	0
chr14	70857310	70857654	brain_AmbionMAQC.21367	0	.	70857310	70857654	0	1	344	0
chr14	70857695	70858560	CD4_Snyder.38757	0	.	70857695	70858560	0	1	865	0
chr14	70857818	70862715	H1_polyA+.56795	0	.	70857818	70862715	0	1	4897	0
chr14	70857982	70858443	melanoma_Garraway_short_term_cultures.33015	0	.	70857982	70858443	0	1	461	0
chr14	70860459	70862198	CD4_Snyder.38759	0	.	70860459	70862198	0	1	1739	0
chr14	70860708	70862711	B_Cells_Pritchard.1709771	0	.	70860708	70862711	0	1	2003	0
chr14	70863794	70870782	H1_polyA+.56796	0	.	70863794	70870782	0	1	6988	0
chr14	70871643	70875179	H1_polyA+.56797	0	.	70871643	70875179	0	1	3536	0
chr14	70876067	70881982	B_Cells_Pritchard.1709903	0	-	70876067	70881982	0	2	592,856	0,5059
chr14	70876721	70882062	H1_polyA+.56800	0	.	70876721	70882062	0	1	5341	0
chr14	70881227	70881873	prostate_carcinoma.48605	0	.	70881227	70881873	0	1	646	0
chr14	70881370	70881740	H1_rRNA-depleted_UCSD_REMC.44387	0	.	70881370	70881740	0	1	370	0
chr14	70881409	70882031	liver_polyA+.67249	0	.	70881409	70882031	0	1	622	0
chr14	70881443	70881939	HeLa_polyA+_Chen.17747	0	.	70881443	70881939	0	1	496	0
chr14	70881595	70881971	MCF7_Burge_Thompson.14550	0	.	70881595	70881971	0	1	376	0
chr14	70882120	70885892	B_Cells_Pritchard.1709941	0	-	70882120	70885892	0	2	67,637	0,3135
chr14	70883665	70894264	H1_polyA+.56802	0	.	70883665	70894264	0	1	10599	0
chr14	70885948	70913985	B_Cells_Pritchard.1709933	0	-	70885948	70913985	0	16	676,127,11,139,373,128,131,112,847,304,293,52,470,59,118,31	0,4172,4947,5321,6437,6930,7204,7593,8638,15480,15790,16361,16478,18327,27811,28006
chr14	70926033	70926528	B_Cells_Pritchard.1710101	0	-	70926033	70926528	0	1	495	0
chr14	72145518	72147018	B_cells_Cheung.97970	0	.	72145518	72147018	0	1	1500	0
chr14	72145599	72147619	B_Cells_Pritchard.1713549	0	.	72145599	72147619	0	1	2020	0
chr14	72148107	72148776	B_cells_Cheung.97972	0	.	72148107	72148776	0	1	669	0
chr14	72149855	72150567	B_cells_Cheung.97973	0	.	72149855	72150567	0	1	712	0
chr14	72150742	72151133	B_Cells_Pritchard.1713557	0	.	72150742	72151133	0	1	391	0
chr14	72151241	72151805	B_Cells_Pritchard.1713559	0	.	72151241	72151805	0	1	564	0
chr14	72152173	72152870	B_cells_Cheung.97974	0	.	72152173	72152870	0	1	697	0
chr14	72152279	72153146	B_Cells_Pritchard.1713563	0	.	72152279	72153146	0	1	867	0
chr14	72154243	72155095	B_Cells_Pritchard.1713571	0	.	72154243	72155095	0	1	852	0
chr14	72154286	72155255	B_cells_Cheung.97978	0	.	72154286	72155255	0	1	969	0
chr14	72497862	72498776	melanoma_Garraway_short_term_cultures.33053	0	.	72497862	72498776	0	1	914	0
chr14	72497885	72498472	MCF7_Burge_Thompson.14587	0	.	72497885	72498472	0	1	587	0
chr14	72498058	72498510	CD4_Plagnol_resting.30321	0	.	72498058	72498510	0	1	452	0
chr14	72498140	72498470	BT20_Thompson.10504	0	.	72498140	72498470	0	1	330	0
chr14	72501486	72502686	REMC_BreastStem.25451	0	.	72501486	72502686	0	1	1200	0
chr14	72501798	72502710	B_cells_Cheung.98039	0	.	72501798	72502710	0	1	912	0
chr14	72663182	72667793	REMC_MyoepithelialBreast.47044	0	.	72663182	72667793	0	1	4611	0
chr14	72665844	72666811	B_cells_Cheung.98092	0	.	72665844	72666811	0	1	967	0
chr14	72668030	72670101	REMC_LuminalBreast.50316	0	.	72668030	72670101	0	1	2071	0
chr14	72761232	72762560	REMC_BreastStem.25674	0	.	72761232	72762560	0	1	1328	0
chr14	72762109	72763164	H1_polyA+.57408	0	.	72762109	72763164	0	1	1055	0
chr14	72762625	72766357	REMC_MyoepithelialBreast.47053	0	.	72762625	72766357	0	1	3732	0
chr14	72763731	72764762	REMC_BreastStem.25471	0	.	72763731	72764762	0	1	1031	0
chr14	72763890	72766181	H1_polyA+.57011	0	.	72763890	72766181	0	1	2291	0
chr14	72764662	72765878	B_cells_Cheung.98119	0	.	72764662	72765878	0	1	1216	0
chr14	72766480	72767186	REMC_MyoepithelialBreast.47054	0	.	72766480	72767186	0	1	706	0
chr14	72766492	72767294	B_Cells_Pritchard.1715187	0	+	72766492	72767294	0	1	802	0
chr14	72766505	72767302	B_cells_Cheung.98121	0	.	72766505	72767302	0	1	797	0
chr14	72766532	72772533	REMC_LuminalBreast.50227	0	.	72766532	72772533	0	1	6001	0
chr14	72767699	72768647	REMC_BreastStem.25473	0	.	72767699	72768647	0	1	948	0
chr14	72767784	72768621	B_cells_Cheung.98122	0	.	72767784	72768621	0	1	837	0
chr14	72767788	72768548	CD4_Plagnol_activated.31276	0	.	72767788	72768548	0	1	760	0
chr14	72767817	72768950	CD4_Plagnol_resting.30361	0	.	72767817	72768950	0	1	1133	0
chr14	72768549	72769336	REMC_MyoepithelialBreast.47056	0	.	72768549	72769336	0	1	787	0
chr14	72768756	72769488	REMC_BreastStem.25474	0	.	72768756	72769488	0	1	732	0
chr14	72768799	72769341	CD4_Plagnol_activated.31277	0	.	72768799	72769341	0	1	542	0
chr14	73002041	73003051	liver_polyA+.67563	0	.	73002041	73003051	0	1	1010	0
chr14	73002041	73003027	kidney_Gilad.43774	0	.	73002041	73003027	0	1	986	0
chr14	73002066	73006580	HepG2_Caltech_ENCODE.17850	0	.	73002066	73006580	0	1	4514	0
chr14	73011317	73013471	liver_polyA+.67575	0	-	73011317	73013471	0	3	594,115,839	0,894,1315
chr14	73011317	73012749	kidney_Gilad.43786	0	-	73011317	73012749	0	3	594,115,117	0,894,1315
chr14	73012544	73013471	liver_polyA+.67572	0	.	73012544	73013471	0	1	927	0
chr14	73169987	73170753	prostate_carcinoma.48769	0	.	73169987	73170753	0	1	766	0
chr14	73170114	73170969	B_Cells_Pritchard.1715549	0	-	73170114	73170969	0	1	855	0
chr14	73170116	73170724	B_cells_Cheung.98210	0	.	73170116	73170724	0	1	608	0
chr14	73170162	73170622	A549_Myers.38335	0	.	73170162	73170622	0	1	460	0
chr14	73170192	73170919	brain_AmbionMAQC.21437	0	.	73170192	73170919	0	1	727	0
chr14	73170491	73170883	H9_polyA+.22324	0	.	73170491	73170883	0	1	392	0
chr14	73330184	73334966	B_cells_Cheung.98658	0	.	73330184	73334966	0	1	4782	0
chr14	73330571	73331230	B_Cells_Pritchard.1715987	0	-	73330571	73331230	0	1	659	0
chr14	73332629	73333869	melanoma_Garraway_short_term_cultures.33151	0	.	73332629	73333869	0	1	1240	0
chr14	73336898	73338362	prostate_carcinoma.48833	0	.	73336898	73338362	0	1	1464	0
chr14	73338990	73340039	HepG2_Caltech_ENCODE.17888	0	.	73338990	73340039	0	1	1049	0
chr14	73342913	73343452	B_cells_Cheung.98380	0	.	73342913	73343452	0	1	539	0
chr14	73345709	73346557	prostate_carcinoma.48838	0	.	73345709	73346557	0	1	848	0
chr14	73345735	73346566	B_cells_Cheung.98386	0	.	73345735	73346566	0	1	831	0
chr14	73347346	73348259	prostate_carcinoma.48839	0	.	73347346	73348259	0	1	913	0
chr14	73347349	73348187	melanoma_Garraway_short_term_cultures.33154	0	.	73347349	73348187	0	1	838	0
chr14	73350281	73351270	B_cells_Cheung.98390	0	.	73350281	73351270	0	1	989	0
chr14	73744653	73754230	Rinn_00022796	0	-	73744653	73754230	0	3	754,113,196	0,6447,9381
chr14	73744728	73745466	B_cells_Cheung.98534	0	.	73744728	73745466	0	1	738	0
chr14	73801788	73803220	REMC_LuminalBreast.50359	0	.	73801788	73803220	0	1	1432	0
chr14	73809730	73811167	REMC_LuminalBreast.50362	0	.	73809730	73811167	0	1	1437	0
chr14	73812564	73813536	REMC_MyoepithelialBreast.47188	0	.	73812564	73813536	0	1	972	0
chr14	73813253	73813947	REMC_BreastStem.25520	0	.	73813253	73813947	0	1	694	0
chr14	73813620	73815062	REMC_LuminalBreast.50364	0	.	73813620	73815062	0	1	1442	0
chr14	73815427	73816098	REMC_LuminalBreast.50365	0	.	73815427	73816098	0	1	671	0
chr14	73819520	73820242	H1_polyA+.57331	0	.	73819520	73820242	0	1	722	0
chr14	73819573	73820350	B_Cells_Pritchard.1718141	0	+	73819573	73820350	0	1	777	0
chr14	73819589	73820343	REMC_LuminalBreast.50366	0	.	73819589	73820343	0	1	754	0
chr14	73819675	73820317	B_cells_Cheung.98542	0	.	73819675	73820317	0	1	642	0
chr14	73862698	73863241	B_Cells_Pritchard.1717625	0	.	73862698	73863241	0	1	543	0
chr14	73938827	73939197	B_Cells_Pritchard.1717913	0	.	73938827	73939197	0	1	370	0
chr14	73966309	73966920	H1_polyA+.57350	0	.	73966309	73966920	0	1	611	0
chr14	73991198	73991958	H1_polyA+.57430	0	.	73991198	73991958	0	1	760	0
chr14	73991201	73991977	prostate_carcinoma.48853	0	.	73991201	73991977	0	1	776	0
chr14	73991625	73991977	B_cells_Cheung.98559	0	.	73991625	73991977	0	1	352	0
chr14	73992920	73994330	H1_polyA+.57432	0	.	73992920	73994330	0	1	1410	0
chr14	73993026	73994186	prostate_carcinoma.48854	0	.	73993026	73994186	0	1	1160	0
chr14	73993477	73994168	BT474_Burge_Thompson.16122	0	.	73993477	73994168	0	1	691	0
chr14	73993497	73994305	B_Cells_Pritchard.1719097	0	+	73993497	73994305	0	1	808	0
chr14	73995097	73998289	H1_polyA+.57434	0	.	73995097	73998289	0	1	3192	0
chr14	74002062	74004285	H1_polyA+.57436	0	.	74002062	74004285	0	1	2223	0
chr14	74004778	74005281	B_Cells_Pritchard.1719151	0	+	74004778	74005281	0	1	503	0
chr14	74009630	74010959	H9_polyA+.22365	0	-	74009630	74010959	0	2	860,200	0,1129
chr14	74009871	74012405	prostate_carcinoma.48872	0	.	74009871	74012405	0	1	2534	0
chr14	74157872	74158740	REMC_LuminalBreast.50375	0	.	74157872	74158740	0	1	868	0
chr14	74160056	74161109	REMC_LuminalBreast.50376	0	.	74160056	74161109	0	1	1053	0
chr14	74163621	74165915	REMC_LuminalBreast.50378	0	.	74163621	74165915	0	1	2294	0
chr14	74163922	74165077	REMC_MyoepithelialBreast.47347	0	.	74163922	74165077	0	1	1155	0
chr14	74164957	74165921	REMC_BreastStem.25550	0	.	74164957	74165921	0	1	964	0
chr14	74165149	74166007	REMC_MyoepithelialBreast.47348	0	.	74165149	74166007	0	1	858	0
chr14	74166788	74168142	REMC_LuminalBreast.50379	0	.	74166788	74168142	0	1	1354	0
chr14	74167436	74169934	REMC_MyoepithelialBreast.47349	0	.	74167436	74169934	0	1	2498	0
chr14	74169804	74175817	REMC_LuminalBreast.50381	0	.	74169804	74175817	0	1	6013	0
chr14	74172140	74173250	REMC_MyoepithelialBreast.47351	0	.	74172140	74173250	0	1	1110	0
chr14	74173350	74178709	REMC_MyoepithelialBreast.47352	0	.	74173350	74178709	0	1	5359	0
chr14	74177880	74179186	REMC_BreastStem.25555	0	.	74177880	74179186	0	1	1306	0
chr14	74178003	74181383	REMC_LuminalBreast.50383	0	.	74178003	74181383	0	1	3380	0
chr14	74182071	74184352	REMC_MyoepithelialBreast.47355	0	.	74182071	74184352	0	1	2281	0
chr14	74182500	74183421	REMC_LuminalBreast.50385	0	.	74182500	74183421	0	1	921	0
chr14	74183511	74186985	B_Cells_Pritchard.1718603	0	.	74183511	74186985	0	1	3474	0
chr14	74183927	74184635	B_cells_Cheung.98593	0	.	74183927	74184635	0	1	708	0
chr14	74185059	74187013	B_cells_Cheung.98595	0	.	74185059	74187013	0	1	1954	0
chr14	74187121	74193964	B_cells_Cheung.98596	0	.	74187121	74193964	0	1	6843	0
chr14	74187206	74188272	CD4_Plagnol_activated.31415	0	.	74187206	74188272	0	1	1066	0
chr14	74187376	74195684	REMC_MyoepithelialBreast.47356	0	.	74187376	74195684	0	1	8308	0
chr14	74187763	74194441	REMC_BreastStem.25558	0	.	74187763	74194441	0	1	6678	0
chr14	74187993	74190390	pHIT000087215	0	+	74187993	74190390	0	3	85,117,164	0,727,2233
chr14	74188683	74193724	CD4_Plagnol_activated.31416	0	.	74188683	74193724	0	1	5041	0
chr14	74190220	74192645	prostate_normal.28434	0	.	74190220	74192645	0	1	2425	0
chr14	74190246	74191661	CD4_Plagnol_resting.30502	0	.	74190246	74191661	0	1	1415	0
chr14	74191459	74193610	melanoma_Garraway_short_term_cultures.33213	0	.	74191459	74193610	0	1	2151	0
chr14	74191658	74192680	HepG2_Caltech_ENCODE.17921	0	.	74191658	74192680	0	1	1022	0
chr14	74192130	74192654	MeWo_Garraway.17638	0	.	74192130	74192654	0	1	524	0
chr14	74286380	74286854	B_cells_Cheung.98638	0	.	74286380	74286854	0	1	474	0
chr14	74379091	74381090	H1_polyA+.57509	0	.	74379091	74381090	0	1	1999	0
chr14	74379281	74381221	HepG2_Caltech_ENCODE.17937	0	.	74379281	74381221	0	1	1940	0
chr14	74380453	74381255	REMC_MyoepithelialBreast.47283	0	.	74380453	74381255	0	1	802	0
chr14	74382644	74384800	REMC_MyoepithelialBreast.47284	0	.	74382644	74384800	0	1	2156	0
chr14	74383191	74388079	HepG2_Caltech_ENCODE.17939	0	.	74383191	74388079	0	1	4888	0
chr14	74385758	74387039	B_Cells_Pritchard.1719187	0	.	74385758	74387039	0	1	1281	0
chr14	74385782	74387001	B_cells_Cheung.98911	0	.	74385782	74387001	0	1	1219	0
chr14	74385784	74386966	prostate_carcinoma.48930	0	.	74385784	74386966	0	1	1182	0
chr14	74385793	74386947	CD4_Plagnol_activated.31479	0	.	74385793	74386947	0	1	1154	0
chr14	74385793	74386915	prostate_normal.28455	0	.	74385793	74386915	0	1	1122	0
chr14	74385793	74386980	CD4_Plagnol_resting.30612	0	.	74385793	74386980	0	1	1187	0
chr14	74385969	74386779	MIP101.33916	0	.	74385969	74386779	0	1	810	0
chr14	74386129	74386971	brain_AmbionMAQC.21554	0	.	74386129	74386971	0	1	842	0
chr14	74386137	74387119	H1_polyA+.57513	0	.	74386137	74387119	0	1	982	0
chr14	74386172	74386632	CD4_Snyder.39040	0	.	74386172	74386632	0	1	460	0
chr14	74386283	74386810	H9_polyA+.22388	0	.	74386283	74386810	0	1	527	0
chr14	74402729	74404093	REMC_LuminalBreast.50418	0	.	74402729	74404093	0	1	1364	0
chr14	74411918	74413247	REMC_MyoepithelialBreast.47290	0	.	74411918	74413247	0	1	1329	0
chr14	74412171	74413212	B_Cells_Pritchard.1719275	0	+	74412171	74413212	0	1	1041	0
chr14	74412284	74413563	B_cells_Cheung.98669	0	.	74412284	74413563	0	1	1279	0
chr14	74412350	74413212	B_Cells_Pritchard.1719277	0	-	74412350	74413212	0	1	862	0
chr14	74467266	74477168	REMC_BreastStem.25636	0	.	74467266	74477168	0	1	9902	0
chr14	74469881	74471324	REMC_LuminalBreast.50441	0	.	74469881	74471324	0	1	1443	0
chr14	74469899	74477163	REMC_MyoepithelialBreast.47297	0	.	74469899	74477163	0	1	7264	0
chr14	74471503	74472365	REMC_LuminalBreast.50442	0	.	74471503	74472365	0	1	862	0
chr14	74474125	74477235	REMC_LuminalBreast.50444	0	.	74474125	74477235	0	1	3110	0
chr14	74476258	74477076	B_Cells_Pritchard.1719313	0	.	74476258	74477076	0	1	818	0
chr14	74502214	74517599	pHIT000113551	0	+	74502214	74517599	0	5	65,128,92,84,291	0,11850,12383,14298,15094
chr14	74502214	74517599	pHIT000024270	0	+	74502214	74517599	0	6	65,102,128,92,84,291	0,9195,11850,12383,14298,15094
chr14	74511707	74517599	pHIT000024273	0	+	74511707	74517599	0	5	65,128,92,84,291	0,2357,2890,4805,5601
chr14	74514064	74517599	pHIT000087830	0	+	74514064	74517599	0	4	109,92,84,291	0,533,2448,3244
chr14	74547461	74548949	CD4_Plagnol_activated.31453	0	.	74547461	74548949	0	1	1488	0
chr14	74547546	74548833	CD4_Plagnol_resting.30544	0	.	74547546	74548833	0	1	1287	0
chr14	74547578	74549038	BT474_Burge_Thompson.16148	0	.	74547578	74549038	0	1	1460	0
chr14	74547581	74548613	T47D_Burge_Thompson.14075	0	.	74547581	74548613	0	1	1032	0
chr14	74547724	74549307	HIT000043328	0	+	74547724	74549307	0	1	1583	0
chr14	74547822	74549055	K562.22324	0	.	74547822	74549055	0	1	1233	0
chr14	74547837	74548534	MCF7_Burge_Thompson.14670	0	.	74547837	74548534	0	1	697	0
chr14	74547854	74548469	A549_Myers.38541	0	.	74547854	74548469	0	1	615	0
chr14	74548017	74548539	HeLa_polyA+_Chen.17849	0	.	74548017	74548539	0	1	522	0
chr14	74664633	74665138	HeLa_polyA-_Chen.9564	0	.	74664633	74665138	0	1	505	0
chr14	74770374	74771475	REMC_LuminalBreast.50468	0	.	74770374	74771475	0	1	1101	0
chr14	74774149	74774851	REMC_LuminalBreast.50469	0	.	74774149	74774851	0	1	702	0
chr14	74782336	74785046	REMC_LuminalBreast.50471	0	.	74782336	74785046	0	1	2710	0
chr14	74788592	74790228	REMC_LuminalBreast.50473	0	.	74788592	74790228	0	1	1636	0
chr14	74790333	74792406	REMC_LuminalBreast.50474	0	.	74790333	74792406	0	1	2073	0
chr14	74792532	74797974	REMC_LuminalBreast.50476	0	+	74792532	74797974	0	2	3961,762	0,4680
chr14	74792532	74797974	REMC_LuminalBreast.50475	0	.	74792532	74797974	0	1	5442	0
chr14	74792550	74795474	REMC_MyoepithelialBreast.47378	0	.	74792550	74795474	0	1	2924	0
chr14	74793218	74797421	REMC_BreastStem.25684	0	.	74793218	74797421	0	1	4203	0
chr14	74793600	74794361	prostate_carcinoma.48981	0	.	74793600	74794361	0	1	761	0
chr14	74793606	74794358	H1_polyA+.57518	0	.	74793606	74794358	0	1	752	0
chr14	74793611	74794378	melanoma_Garraway_short_term_cultures.33315	0	.	74793611	74794378	0	1	767	0
chr14	74793633	74794224	CD4_Snyder.39103	0	.	74793633	74794224	0	1	591	0
chr14	74794509	74795893	melanoma_Garraway_short_term_cultures.33316	0	.	74794509	74795893	0	1	1384	0
chr14	74794534	74795444	BT474_Burge_Thompson.16183	0	.	74794534	74795444	0	1	910	0
chr14	74794591	74795689	H1_polyA+.57519	0	.	74794591	74795689	0	1	1098	0
chr14	74794633	74795499	CD4_Snyder.39105	0	.	74794633	74795499	0	1	866	0
chr14	74794635	74795440	prostate_carcinoma.48982	0	.	74794635	74795440	0	1	805	0
chr14	74794638	74795525	MCF7_Burge_Thompson.14701	0	.	74794638	74795525	0	1	887	0
chr14	74795125	74796053	A549_Myers.38537	0	.	74795125	74796053	0	1	928	0
chr14	74800440	74801980	REMC_LuminalBreast.50479	0	.	74800440	74801980	0	1	1540	0
chr14	74803634	74806175	REMC_LuminalBreast.50481	0	.	74803634	74806175	0	1	2541	0
chr14	75671105	75672188	prostate_carcinoma.49082	0	.	75671105	75672188	0	1	1083	0
chr14	75675097	75676161	prostate_carcinoma.49084	0	.	75675097	75676161	0	1	1064	0
chr14	75741135	75743291	T47D_Burge_Thompson.14117	0	.	75741135	75743291	0	1	2156	0
chr14	75741282	75743203	CD4_Snyder.39173	0	.	75741282	75743203	0	1	1921	0
chr14	75741307	75743226	NEC_from_H9.37434	0	.	75741307	75743226	0	1	1919	0
chr14	75741558	75743207	HeLa_polyA-_Chen.9592	0	.	75741558	75743207	0	1	1649	0
chr14	75742165	75743338	MCF7_Burge_Thompson.14728	0	.	75742165	75743338	0	1	1173	0
chr14	75742743	75743223	MeWo_Garraway.17746	0	.	75742743	75743223	0	1	480	0
chr14	75743317	75750568	MIP101.34096	0	.	75743317	75750568	0	1	7251	0
chr14	75743327	75750553	CD4_Plagnol_resting.30644	0	.	75743327	75750553	0	1	7226	0
chr14	75743392	75749190	T47D_Burge_Thompson.14122	0	.	75743392	75749190	0	1	5798	0
chr14	75743398	75750561	prostate_carcinoma.49087	0	.	75743398	75750561	0	1	7163	0
chr14	75743403	75750552	NEC_from_H9.37435	0	.	75743403	75750552	0	1	7149	0
chr14	75743424	75750541	K562.22363	0	.	75743424	75750541	0	1	7117	0
chr14	75743433	75749019	MCF7_Burge_Thompson.14729	0	.	75743433	75749019	0	1	5586	0
chr14	75743480	75750563	prostate_normal.28567	0	.	75743480	75750563	0	1	7083	0
chr14	75743482	75748645	MDAMB231_Thompson.11079	0	.	75743482	75748645	0	1	5163	0
chr14	75743609	75749676	MDAMB468_Thompson.12096	0	.	75743609	75749676	0	1	6067	0
chr14	75744435	75746616	BT474_Burge_Thompson.16239	0	.	75744435	75746616	0	1	2181	0
chr14	75745870	75748551	liver_polyA+.68219	0	.	75745870	75748551	0	1	2681	0
chr14	75745981	75746755	CD4_Snyder.39177	0	.	75745981	75746755	0	1	774	0
chr14	75751950	75764583	REMC_LuminalBreast.59998	0	.	75751950	75764583	0	1	12633	0
chr14	75751965	75763052	REMC_BreastStem.26185	0	.	75751965	75763052	0	1	11087	0
chr14	75752010	75764381	B_cells_Cheung.100327	0	.	75752010	75764381	0	1	12371	0
chr14	75752013	75762923	REMC_MyoepithelialBreast.47489	0	.	75752013	75762923	0	1	10910	0
chr14	75758407	75758898	H1_polyA+.57643	0	.	75758407	75758898	0	1	491	0
chr14	75760693	75763662	B_Cells_Pritchard.1722533	0	.	75760693	75763662	0	1	2969	0
chr14	75761823	75763716	prostate_carcinoma.49095	0	.	75761823	75763716	0	1	1893	0
chr14	75771852	75772234	K562.22365	0	.	75771852	75772234	0	1	382	0
chr14	75773275	75774839	B_cells_Cheung.99083	0	.	75773275	75774839	0	1	1564	0
chr14	75773447	75774756	H1_polyA+.57568	0	.	75773447	75774756	0	1	1309	0
chr14	75774945	75775922	H1_polyA+.57569	0	.	75774945	75775922	0	1	977	0
chr14	75776252	75778710	REMC_BreastStem.26188	0	.	75776252	75778710	0	1	2458	0
chr14	75776401	75778803	REMC_MyoepithelialBreast.47495	0	.	75776401	75778803	0	1	2402	0
chr14	75777075	75777874	B_cells_Cheung.99090	0	.	75777075	75777874	0	1	799	0
chr14	75777586	75779025	B_Cells_Pritchard.1722575	0	.	75777586	75779025	0	1	1439	0
chr14	75777942	75779029	B_cells_Cheung.99084	0	.	75777942	75779029	0	1	1087	0
chr14	75787327	75800245	REMC_LuminalBreast.60003	0	+	75787327	75800245	0	2	877,950	0,11968
chr14	75792403	75793667	REMC_LuminalBreast.60007	0	.	75792403	75793667	0	1	1264	0
chr14	75796810	75802632	REMC_MyoepithelialBreast.47500	0	.	75796810	75802632	0	1	5822	0
chr14	75798152	75800162	REMC_LuminalBreast.60005	0	.	75798152	75800162	0	1	2010	0
chr14	75798189	75799994	prostate_carcinoma.49109	0	.	75798189	75799994	0	1	1805	0
chr14	75798555	75801494	B_Cells_Pritchard.1722655	0	.	75798555	75801494	0	1	2939	0
chr14	75798643	75799645	H1_polyA+.57572	0	.	75798643	75799645	0	1	1002	0
chr14	75798687	75799866	B_cells_Cheung.99105	0	.	75798687	75799866	0	1	1179	0
chr14	75799958	75802301	B_cells_Cheung.99106	0	.	75799958	75802301	0	1	2343	0
chr14	75800064	75801287	MIP101.34111	0	.	75800064	75801287	0	1	1223	0
chr14	75800381	75801509	prostate_carcinoma.49110	0	.	75800381	75801509	0	1	1128	0
chr14	75800449	75800981	prostate_normal.28578	0	.	75800449	75800981	0	1	532	0
chr14	75807997	75808990	B_cells_Cheung.99110	0	.	75807997	75808990	0	1	993	0
chr14	75808377	75809767	REMC_MyoepithelialBreast.47503	0	.	75808377	75809767	0	1	1390	0
chr14	75809014	75809666	BT474_Burge_Thompson.16231	0	.	75809014	75809666	0	1	652	0
chr14	75809895	75810352	REMC_MyoepithelialBreast.47504	0	.	75809895	75810352	0	1	457	0
chr14	75812854	75813674	REMC_LuminalBreast.60014	0	.	75812854	75813674	0	1	820	0
chr14	75812901	75813916	REMC_MyoepithelialBreast.47506	0	.	75812901	75813916	0	1	1015	0
chr14	75823314	75824148	REMC_LuminalBreast.60018	0	.	75823314	75824148	0	1	834	0
chr14	76255530	76256047	B_Cells_Pritchard.1724121	0	.	76255530	76256047	0	1	517	0
chr14	76409334	76409673	A549_Myers.38664	0	.	76409334	76409673	0	1	339	0
chr14	76420702	76421047	A549_Myers.38675	0	.	76420702	76421047	0	1	345	0
chr14	76423817	76425401	melanoma_Garraway_short_term_cultures.33401	0	.	76423817	76425401	0	1	1584	0
chr14	76429462	76431416	melanoma_Garraway_short_term_cultures.33404	0	.	76429462	76431416	0	1	1954	0
chr14	76438672	76439381	melanoma_Garraway_short_term_cultures.33408	0	.	76438672	76439381	0	1	709	0
chr14	76440048	76441292	melanoma_Garraway_short_term_cultures.33409	0	.	76440048	76441292	0	1	1244	0
chr14	76440110	76441292	melanoma_Garraway_short_term_cultures.33410	0	-	76440110	76441292	0	2	754,303	0,879
chr14	76440473	76443074	A549_Myers.38690	0	-	76440473	76443074	0	2	789,144	0,2457
chr14	76441964	76462226	B_Cells_Pritchard.1724521	0	-	76441964	76462226	0	2	213,229	0,20033
chr14	76456432	76456956	A549_Myers.38698	0	.	76456432	76456956	0	1	524	0
chr14	76463108	76463453	CD4_Snyder.39190	0	.	76463108	76463453	0	1	345	0
chr14	76464064	76484848	H1_polyA+.57590	0	-	76464064	76484848	0	5	255,1075,2444,113,109	0,456,2601,5167,20675
chr14	76467853	76468799	B_cells_Cheung.99162	0	.	76467853	76468799	0	1	946	0
chr14	76468043	76468487	A549_Myers.38704	0	.	76468043	76468487	0	1	444	0
chr14	76468542	76469332	A549_Myers.38705	0	.	76468542	76469332	0	1	790	0
chr14	76468655	76469333	B_Cells_Pritchard.1724555	0	.	76468655	76469333	0	1	678	0
chr14	76469440	76470007	H1_polyA+.57592	0	.	76469440	76470007	0	1	567	0
chr14	76483547	76484088	H1_polyA+.57599	0	.	76483547	76484088	0	1	541	0
chr14	76491846	76494068	B_Cells_Pritchard.1724679	0	+	76491846	76494068	0	1	2222	0
chr14	76492145	76493047	A549_Myers.38710	0	.	76492145	76493047	0	1	902	0
chr14	76492899	76493494	CD4_Snyder.39191	0	.	76492899	76493494	0	1	595	0
chr14	76492978	76494134	B_cells_Cheung.99165	0	.	76492978	76494134	0	1	1156	0
chr14	76495558	76499204	B_cells_Cheung.99209	0	.	76495558	76499204	0	1	3646	0
chr14	76498011	76498971	melanoma_Garraway_short_term_cultures.33413	0	.	76498011	76498971	0	1	960	0
chr14	76498188	76498872	prostate_normal.28590	0	.	76498188	76498872	0	1	684	0
chr14	76499456	76503541	H1_polyA+.57603	0	+	76499456	76503541	0	2	2516,805	0,3280
chr14	76500222	76500552	MCF10A_Thompson.10751	0	.	76500222	76500552	0	1	330	0
chr14	76500745	76501119	MCF10A_Thompson.10752	0	.	76500745	76501119	0	1	374	0
chr14	76501304	76502713	REMC_MyoepithelialBreast.47551	0	.	76501304	76502713	0	1	1409	0
chr14	76502867	76503535	MCF7_Burge_Thompson.14733	0	.	76502867	76503535	0	1	668	0
chr14	76502880	76503532	REMC_MyoepithelialBreast.47552	0	.	76502880	76503532	0	1	652	0
chr14	76502881	76503428	prostate_carcinoma.49137	0	.	76502881	76503428	0	1	547	0
chr14	76510538	76511530	B_cells_Cheung.99181	0	.	76510538	76511530	0	1	992	0
chr14	76510554	76511522	B_Cells_Pritchard.1724697	0	+	76510554	76511522	0	1	968	0
chr14	76511973	76513262	B_Cells_Pritchard.1724725	0	-	76511973	76513262	0	1	1289	0
chr14	76512094	76512441	B_cells_Cheung.99183	0	.	76512094	76512441	0	1	347	0
chr14	76522198	76523165	B_Cells_Pritchard.1724767	0	-	76522198	76523165	0	1	967	0
chr14	76526184	76526955	B_cells_Cheung.99198	0	.	76526184	76526955	0	1	771	0
chr14	76534322	76534850	B_cells_Cheung.99205	0	.	76534322	76534850	0	1	528	0
chr14	76535168	76535727	B_Cells_Pritchard.1724805	0	.	76535168	76535727	0	1	559	0
chr14	76536580	76536970	A549_Myers.38717	0	.	76536580	76536970	0	1	390	0
chr14	76536787	76537219	B_Cells_Pritchard.1724811	0	.	76536787	76537219	0	1	432	0
chr14	76542292	76542691	B_cells_Cheung.99207	0	.	76542292	76542691	0	1	399	0
chr14	76566023	76566496	CD4_Snyder.39193	0	.	76566023	76566496	0	1	473	0
chr14	76566096	76566490	melanoma_Garraway_short_term_cultures.33418	0	.	76566096	76566490	0	1	394	0
chr14	76566153	76566998	REMC_MyoepithelialBreast.47555	0	.	76566153	76566998	0	1	845	0
chr14	76566179	76566922	REMC_LuminalBreast.50596	0	.	76566179	76566922	0	1	743	0
chr14	76567056	76570889	REMC_LuminalBreast.50597	0	.	76567056	76570889	0	1	3833	0
chr14	76567091	76572160	B_cells_Cheung.99212	0	.	76567091	76572160	0	1	5069	0
chr14	76567091	76567659	HeLa_polyA+_Chen.17888	0	.	76567091	76567659	0	1	568	0
chr14	76567091	76572160	B_cells_Cheung.99211	0	-	76567091	76572160	0	2	2220,2225	0,2844
chr14	76567105	76567533	K562.22409	0	.	76567105	76567533	0	1	428	0
chr14	76567105	76567665	prostate_normal.28596	0	.	76567105	76567665	0	1	560	0
chr14	76567120	76567835	CD4_Plagnol_activated.31554	0	.	76567120	76567835	0	1	715	0
chr14	76567122	76567659	CD4_Plagnol_resting.30747	0	.	76567122	76567659	0	1	537	0
chr14	76567140	76569420	REMC_MyoepithelialBreast.47556	0	.	76567140	76569420	0	1	2280	0
chr14	76567609	76568414	CD4_Snyder.39194	0	.	76567609	76568414	0	1	805	0
chr14	76567995	76570560	CD4_Plagnol_activated.31555	0	.	76567995	76570560	0	1	2565	0
chr14	76568211	76570847	melanoma_Garraway_short_term_cultures.33419	0	.	76568211	76570847	0	1	2636	0
chr14	76568601	76569129	MCF7_Burge_Thompson.15359	0	.	76568601	76569129	0	1	528	0
chr14	76568685	76569099	A549_Myers.38722	0	.	76568685	76569099	0	1	414	0
chr14	76568828	76569217	brain_AmbionMAQC.21645	0	.	76568828	76569217	0	1	389	0
chr14	76568881	76569234	HeLa_polyA-_Chen.9602	0	.	76568881	76569234	0	1	353	0
chr14	76569440	76569867	A549_Myers.38723	0	.	76569440	76569867	0	1	427	0
chr14	76569876	76570309	MCF7_Burge_Thompson.15360	0	.	76569876	76570309	0	1	433	0
chr14	76569925	76570426	A549_Myers.38724	0	.	76569925	76570426	0	1	501	0
chr14	76575068	76576135	melanoma_Garraway_short_term_cultures.33421	0	.	76575068	76576135	0	1	1067	0
chr14	76577159	76605599	HIT000017189	0	-	76577159	76605599	0	4	214,191,124,2395	0,18474,25007,26045
chr14	76579585	76582084	REMC_LuminalBreast.50598	0	.	76579585	76582084	0	1	2499	0
chr14	76587154	76587733	B_cells_Cheung.99225	0	.	76587154	76587733	0	1	579	0
chr14	76587258	76587675	A549_Myers.38729	0	.	76587258	76587675	0	1	417	0
chr14	76587356	76587738	B_Cells_Pritchard.1725111	0	.	76587356	76587738	0	1	382	0
chr14	76603042	76605267	B_Cells_Pritchard.1725181	0	.	76603042	76605267	0	1	2225	0
chr14	76603761	76605352	prostate_carcinoma.49146	0	.	76603761	76605352	0	1	1591	0
chr14	76609903	76612287	Rinn_00023135	0	-	76609903	76612287	0	3	471,157,88	0,634,2296
chr14	76620815	76622674	REMC_LuminalBreast.50601	0	.	76620815	76622674	0	1	1859	0
chr14	76632935	76634086	B_Cells_Pritchard.1725279	0	-	76632935	76634086	0	1	1151	0
chr14	76654871	76655497	REMC_LuminalBreast.50610	0	.	76654871	76655497	0	1	626	0
chr14	76655516	76656611	B_cells_Cheung.99240	0	.	76655516	76656611	0	1	1095	0
chr14	76655566	76656521	H1_polyA+.57619	0	.	76655566	76656521	0	1	955	0
chr14	76655597	76656513	REMC_MyoepithelialBreast.47568	0	.	76655597	76656513	0	1	916	0
chr14	76656757	76658835	REMC_LuminalBreast.50612	0	.	76656757	76658835	0	1	2078	0
chr14	76656781	76658883	B_cells_Cheung.99241	0	.	76656781	76658883	0	1	2102	0
chr14	76656810	76657826	REMC_MyoepithelialBreast.47569	0	.	76656810	76657826	0	1	1016	0
chr14	76656825	76657638	brain_AmbionMAQC.21596	0	.	76656825	76657638	0	1	813	0
chr14	76656867	76657640	prostate_carcinoma.49171	0	.	76656867	76657640	0	1	773	0
chr14	76660591	76661444	B_Cells_Pritchard.1725303	0	.	76660591	76661444	0	1	853	0
chr14	76660832	76661491	A549_Myers.38742	0	.	76660832	76661491	0	1	659	0
chr14	76660940	76661459	B_cells_Cheung.99245	0	.	76660940	76661459	0	1	519	0
chr14	76661543	76661882	A549_Myers.38741	0	.	76661543	76661882	0	1	339	0
chr14	76661560	76662348	brain_AmbionMAQC.21599	0	.	76661560	76662348	0	1	788	0
chr14	76680405	76680964	brain_AmbionMAQC.21615	0	.	76680405	76680964	0	1	559	0
chr14	76684096	76686025	H1_polyA+.57622	0	.	76684096	76686025	0	1	1929	0
chr14	76691351	76692064	brain_AmbionMAQC.21608	0	.	76691351	76692064	0	1	713	0
chr14	76694255	76695049	brain_AmbionMAQC.21609	0	.	76694255	76695049	0	1	794	0
chr14	76694274	76694750	MCF7_Burge_Thompson.14744	0	.	76694274	76694750	0	1	476	0
chr14	76798988	76799717	BT474_Burge_Thompson.16260	0	.	76798988	76799717	0	1	729	0
chr14	77035304	77035611	B_Cells_Pritchard.1726017	0	+	77035304	77035611	0	1	307	0
chr14	77321305	77322095	REMC_MyoepithelialBreast.47658	0	.	77321305	77322095	0	1	790	0
chr14	77321512	77322624	prostate_carcinoma.49245	0	.	77321512	77322624	0	1	1112	0
chr14	77321695	77322410	REMC_BreastStem.25767	0	.	77321695	77322410	0	1	715	0
chr14	79703502	79705608	pHIT000024333	0	-	79703502	79705608	0	3	214,82,34	0,532,2072
chr14	79961376	79962506	H1_polyA+.57861	0	.	79961376	79962506	0	1	1130	0
chr14	79969994	79970926	MIP101.34329	0	.	79969994	79970926	0	1	932	0
chr14	80000877	80008132	Rinn_00022565	0	+	80000877	80008132	0	2	175,178	0,7077
chr14	80691421	80692338	liver_polyA+.68454	0	.	80691421	80692338	0	1	917	0
chr14	80697925	80698299	liver_polyA+.68458	0	.	80697925	80698299	0	1	374	0
chr14	80701294	80706500	B_cells_Cheung.100090	0	-	80701294	80706500	0	4	184,44,660,295	0,3945,4003,4911
chr14	80705335	80706485	prostate_carcinoma.49312	0	.	80705335	80706485	0	1	1150	0
chr14	80705793	80706361	T47D_Burge_Thompson.14177	0	.	80705793	80706361	0	1	568	0
chr14	80705897	80707960	Rinn_00022566	0	+	80705897	80707960	0	2	23,1348	0,715
chr14	80705981	80706500	B_cells_Cheung.100091	0	.	80705981	80706500	0	1	519	0
chr14	80706192	80707309	MIP101.34367	0	.	80706192	80707309	0	1	1117	0
chr14	80706218	80706694	A549_Myers.38857	0	.	80706218	80706694	0	1	476	0
chr14	80706495	80708009	REMC_MyoepithelialBreast.47681	0	.	80706495	80708009	0	1	1514	0
chr14	80706558	80707592	melanoma_Garraway_short_term_cultures.33557	0	.	80706558	80707592	0	1	1034	0
chr14	80706568	80707716	H1_polyA+.57883	0	.	80706568	80707716	0	1	1148	0
chr14	80706579	80707758	REMC_BreastStem.25800	0	.	80706579	80707758	0	1	1179	0
chr14	80706584	80707930	REMC_LuminalBreast.50869	0	.	80706584	80707930	0	1	1346	0
chr14	80706587	80707911	HIT000288804	0	+	80706587	80707911	0	1	1324	0
chr14	80706588	80707625	B_cells_Cheung.100092	0	.	80706588	80707625	0	1	1037	0
chr14	80706588	80707567	B_Cells_Pritchard.1737091	0	+	80706588	80707567	0	1	979	0
chr14	80759600	80760161	B_Cells_Pritchard.1736407	0	.	80759600	80760161	0	1	561	0
chr14	80784903	80786440	REMC_LuminalBreast.50873	0	.	80784903	80786440	0	1	1537	0
chr14	80790040	80794906	REMC_MyoepithelialBreast.47691	0	.	80790040	80794906	0	1	4866	0
chr14	80790918	80792978	H1_polyA+.57941	0	.	80790918	80792978	0	1	2060	0
chr14	80793324	80794150	H1_polyA+.57942	0	.	80793324	80794150	0	1	826	0
chr14	80795218	80796250	B_cells_Cheung.100111	0	.	80795218	80796250	0	1	1032	0
chr14	80795294	80796381	H1_polyA+.57943	0	.	80795294	80796381	0	1	1087	0
chr14	80795402	80796041	K562.22441	0	.	80795402	80796041	0	1	639	0
chr14	80795485	80796467	REMC_LuminalBreast.50877	0	.	80795485	80796467	0	1	982	0
chr14	80795586	80796363	B_Cells_Pritchard.1736505	0	.	80795586	80796363	0	1	777	0
chr14	80795708	80796274	MCF10A_Thompson.10803	0	.	80795708	80796274	0	1	566	0
chr14	80996815	80997970	REMC_BreastStem.25807	0	.	80996815	80997970	0	1	1155	0
chr14	81000361	81001225	REMC_BreastStem.25809	0	.	81000361	81001225	0	1	864	0
chr14	81002854	81006187	REMC_BreastStem.25811	0	.	81002854	81006187	0	1	3333	0
chr14	81141425	81159158	HIT000091913	0	-	81141425	81159158	0	3	226,570,409	0,1803,17324
chr14	81197496	81198484	pHIT000113598	0	+	81197496	81198484	0	2	159,603	0,385
chr14	81197594	81198226	HepG2_Caltech_ENCODE.18089	0	.	81197594	81198226	0	1	632	0
chr14	81197670	81198671	H1_polyA+.57914	0	.	81197670	81198671	0	1	1001	0
chr14	81197676	81198233	A549_Myers.38878	0	.	81197676	81198233	0	1	557	0
chr14	81197709	81198214	MIP101.34389	0	.	81197709	81198214	0	1	505	0
chr14	81198108	81198614	K562.22468	0	.	81198108	81198614	0	1	506	0
chr14	81198304	81198646	HepG2_Caltech_ENCODE.18090	0	.	81198304	81198646	0	1	342	0
chr14	81452340	81453219	B_Cells_Pritchard.1738057	0	.	81452340	81453219	0	1	879	0
chr14	81452504	81453201	H1_polyA+.57916	0	.	81452504	81453201	0	1	697	0
chr14	81452535	81453228	HepG2_Caltech_ENCODE.18093	0	.	81452535	81453228	0	1	693	0
chr14	81452536	81453228	K562.22472	0	.	81452536	81453228	0	1	692	0
chr14	81452563	81453028	MeWo_Garraway.17818	0	.	81452563	81453028	0	1	465	0
chr14	81452569	81454032	MIP101.34393	0	+	81452569	81454032	0	2	366,374	0,1089
chr14	81453304	81453730	H1_polyA+.57917	0	.	81453304	81453730	0	1	426	0
chr14	81533712	81534881	B_cells_Cheung.100170	0	.	81533712	81534881	0	1	1169	0
chr14	81539547	81539961	B_cells_Cheung.100178	0	.	81539547	81539961	0	1	414	0
chr14	81561142	81563968	B_cells_Cheung.100200	0	.	81561142	81563968	0	1	2826	0
chr14	81563424	81563955	B_Cells_Pritchard.1738383	0	.	81563424	81563955	0	1	531	0
chr14	82164468	82167585	pHIT000113599	0	-	82164468	82167585	0	2	257,100	0,3017
chr14	82201381	82203944	H1_polyA+.57924	0	.	82201381	82203944	0	1	2563	0
chr14	82241449	82242071	H1_polyA+.57932	0	.	82241449	82242071	0	1	622	0
chr14	82256522	82257541	H1_polyA+.57934	0	.	82256522	82257541	0	1	1019	0
chr14	82260910	82261393	BT474_Burge_Thompson.16323	0	.	82260910	82261393	0	1	483	0
chr14	83105666	83106450	HepG2_Caltech_ENCODE.18105	0	.	83105666	83106450	0	1	784	0
chr14	83459791	83460557	B_cells_Cheung.100220	0	.	83459791	83460557	0	1	766	0
chr14	83460239	83460749	B_Cells_Pritchard.1741439	0	.	83460239	83460749	0	1	510	0
chr14	85172844	85173625	REMC_BreastStem.25831	0	.	85172844	85173625	0	1	781	0
chr14	85173036	85175858	REMC_MyoepithelialBreast.47805	0	.	85173036	85175858	0	1	2822	0
chr14	85497373	85500220	CD4_Snyder.39354	0	.	85497373	85500220	0	1	2847	0
chr14	85498226	85500496	B_cells_Cheung.100257	0	.	85498226	85500496	0	1	2270	0
chr14	85499093	85500040	B_Cells_Pritchard.1744835	0	.	85499093	85500040	0	1	947	0
chr14	85536842	85543979	B_Cells_Pritchard.1744921	0	+	85536842	85543979	0	2	208,957	0,6180
chr14	85536855	85544037	B_cells_Cheung.100271	0	+	85536855	85544037	0	2	195,1015	0,6167
chr14	85551895	85552319	CD4_Snyder.39394	0	.	85551895	85552319	0	1	424	0
chr14	85554705	85555144	CD4_Snyder.39395	0	.	85554705	85555144	0	1	439	0
chr14	85660024	85660672	B_cells_Cheung.100293	0	.	85660024	85660672	0	1	648	0
chr14	86441874	86458867	HIT000093480	0	+	86441874	86458867	0	5	272,84,42,74,1306	0,7698,8864,14483,15687
chr14	86441876	86458854	Rinn_00022350	0	+	86441876	86458854	0	5	270,85,43,75,1294	0,7695,8861,14480,15684
chr14	87307204	87307581	A549_Myers.38919	0	.	87307204	87307581	0	1	377	0
chr14	87557490	87630588	pHIT000113607	0	+	87557490	87630588	0	6	99,75,89,194,119,183	0,5394,15957,57781,62643,72915
chr14	87569494	87570051	liver_polyA+.68568	0	.	87569494	87570051	0	1	557	0
chr14	87578063	87578568	liver_polyA+.68580	0	.	87578063	87578568	0	1	505	0
chr14	87578096	87578803	prostate_carcinoma.49424	0	.	87578096	87578803	0	1	707	0
chr14	87601988	87613206	liver_polyA+.69267	0	.	87601988	87613206	0	1	11218	0
chr14	87604967	87607717	kidney_Gilad.44374	0	.	87604967	87607717	0	1	2750	0
chr14	87608045	87611230	kidney_Gilad.44365	0	.	87608045	87611230	0	1	3185	0
chr14	87618211	87647426	prostate_carcinoma.49433	0	-	87618211	87647426	0	4	201,4147,7132,1322	0,2792,9597,27893
chr14	87619426	87636398	HepG2_Caltech_ENCODE.18126	0	-	87619426	87636398	0	2	5897,10929	0,6043
chr14	87625431	87626980	prostate_normal.28798	0	.	87625431	87626980	0	1	1549	0
chr14	87636881	87637674	HepG2_Caltech_ENCODE.18139	0	.	87636881	87637674	0	1	793	0
chr14	87641266	87642875	HepG2_Caltech_ENCODE.18142	0	.	87641266	87642875	0	1	1609	0
chr14	87641615	87642565	liver_polyA+.68598	0	.	87641615	87642565	0	1	950	0
chr14	87647180	87713756	pHIT000113611	0	+	87647180	87713756	0	4	82,201,188,282	0,27515,42171,66294
chr14	87656770	87658262	liver_polyA+.68591	0	.	87656770	87658262	0	1	1492	0
chr14	87656782	87658262	kidney_Gilad.44403	0	.	87656782	87658262	0	1	1480	0
chr14	87664424	87667153	liver_polyA+.68607	0	.	87664424	87667153	0	1	2729	0
chr14	87664425	87666176	kidney_Gilad.44402	0	.	87664425	87666176	0	1	1751	0
chr14	87988902	87989403	H1_polyA+.58035	0	.	87988902	87989403	0	1	501	0
chr14	88549210	88562336	HepG2_Caltech_ENCODE.18151	0	+	88549210	88562336	0	2	446,748	0,12378
chr14	88563128	88563614	A549_Myers.38970	0	.	88563128	88563614	0	1	486	0
chr14	88576780	88577996	REMC_MyoepithelialBreast.47864	0	.	88576780	88577996	0	1	1216	0
chr14	88668633	88668938	B_cells_Cheung.100425	0	.	88668633	88668938	0	1	305	0
chr14	89169116	89169608	B_Cells_Pritchard.1752835	0	.	89169116	89169608	0	1	492	0
chr14	89582715	89584791	REMC_MyoepithelialBreast.47987	0	.	89582715	89584791	0	1	2076	0
chr14	89582822	89583747	MIP101.34584	0	.	89582822	89583747	0	1	925	0
chr14	89583902	89585097	MIP101.34585	0	.	89583902	89585097	0	1	1195	0
chr14	89771247	89771658	A549_Myers.39008	0	.	89771247	89771658	0	1	411	0
chr14	89810950	89812275	T47D_Burge_Thompson.14245	0	.	89810950	89812275	0	1	1325	0
chr14	89811140	89812324	prostate_normal.28872	0	.	89811140	89812324	0	1	1184	0
chr14	89811193	89811992	MDAMB231_Thompson.11177	0	.	89811193	89811992	0	1	799	0
chr14	89811260	89812262	H9_polyA+.22689	0	.	89811260	89812262	0	1	1002	0
chr14	89905406	89907275	REMC_LuminalBreast.51180	0	.	89905406	89907275	0	1	1869	0
chr14	89917871	89924243	REMC_LuminalBreast.51183	0	.	89917871	89924243	0	1	6372	0
chr14	89919233	89919883	A549_Myers.39035	0	.	89919233	89919883	0	1	650	0
chr14	89919334	89921375	B_cells_Cheung.100628	0	.	89919334	89921375	0	1	2041	0
chr14	89919443	89921071	BT474_Burge_Thompson.16402	0	.	89919443	89921071	0	1	1628	0
chr14	89919507	89920727	CD4_Snyder.39628	0	.	89919507	89920727	0	1	1220	0
chr14	89919543	89920915	MCF7_Burge_Thompson.14848	0	.	89919543	89920915	0	1	1372	0
chr14	89919583	89921197	BT20_Thompson.10686	0	.	89919583	89921197	0	1	1614	0
chr14	89956847	89957503	REMC_MyoepithelialBreast.48031	0	.	89956847	89957503	0	1	656	0
chr14	89988343	89991316	Rinn_00023147	0	-	89988343	89991316	0	3	67,155,124	0,2503,2849
chr14	89991366	89995001	Rinn_00022396	0	+	89991366	89995001	0	3	1001,718,310	0,1171,3325
chr14	89991367	89995001	ENST00000419459	0	+	89991367	89995001	0	3	1000,717,309	0,1171,3325
chr14	90025093	90027734	HIT000097463	0	-	90025093	90027734	0	1	2641	0
chr14	90027516	90027831	BT474_Burge_Thompson.16415	0	.	90027516	90027831	0	1	315	0
chr14	90036858	90037367	BT474_Burge_Thompson.16416	0	.	90036858	90037367	0	1	509	0
chr14	90036873	90044536	HepG2_Caltech_ENCODE.18256	0	+	90036873	90044536	0	3	626,92,432	0,4987,7231
chr14	90036879	90037321	ZR751_Thompson.11991	0	.	90036879	90037321	0	1	442	0
chr14	90037070	90037492	B_Cells_Pritchard.1755311	0	.	90037070	90037492	0	1	422	0
chr14	90037111	90037453	K562.22523	0	.	90037111	90037453	0	1	342	0
chr14	90044087	90044536	HepG2_Caltech_ENCODE.18257	0	.	90044087	90044536	0	1	449	0
chr14	90045846	90046941	REMC_LuminalBreast.51200	0	.	90045846	90046941	0	1	1095	0
chr14	90048001	90049123	A549_Myers.39039	0	.	90048001	90049123	0	1	1122	0
chr14	90058511	90059070	A549_Myers.39049	0	.	90058511	90059070	0	1	559	0
chr14	90070385	90071266	brain_AmbionMAQC.21895	0	.	90070385	90071266	0	1	881	0
chr14	90071999	90073166	brain_AmbionMAQC.21896	0	.	90071999	90073166	0	1	1167	0
chr14	90072120	90072952	BT474_Burge_Thompson.16420	0	.	90072120	90072952	0	1	832	0
chr14	90354268	90356121	REMC_LuminalBreast.51220	0	.	90354268	90356121	0	1	1853	0
chr14	90356141	90356658	T47D_Burge_Thompson.14255	0	.	90356141	90356658	0	1	517	0
chr14	90367306	90369078	REMC_LuminalBreast.51225	0	.	90367306	90369078	0	1	1772	0
chr14	90370718	90372219	REMC_LuminalBreast.51227	0	.	90370718	90372219	0	1	1501	0
chr14	90373941	90374848	REMC_LuminalBreast.51229	0	.	90373941	90374848	0	1	907	0
chr14	90375121	90376193	REMC_LuminalBreast.51230	0	.	90375121	90376193	0	1	1072	0
chr14	90381638	90388833	REMC_LuminalBreast.51473	0	.	90381638	90388833	0	1	7195	0
chr14	90383647	90387130	melanoma_Garraway_short_term_cultures.33692	0	.	90383647	90387130	0	1	3483	0
chr14	90383930	90388827	REMC_MyoepithelialBreast.48042	0	.	90383930	90388827	0	1	4897	0
chr14	90383954	90386486	prostate_carcinoma.49673	0	.	90383954	90386486	0	1	2532	0
chr14	90383957	90386748	XR_041538	0	-	90383957	90386748	0	2	2619,171	0,2620
chr14	90383957	90386748	XR_041539	0	-	90383957	90386748	0	1	2791	0
chr14	90383958	90386748	HIT000020131	0	-	90383958	90386748	0	1	2790	0
chr14	90384593	90386537	B_cells_Cheung.100741	0	.	90384593	90386537	0	1	1944	0
chr14	90384650	90387333	H1_polyA+.58258	0	.	90384650	90387333	0	1	2683	0
chr14	90384728	90386476	brain_AmbionMAQC.21805	0	.	90384728	90386476	0	1	1748	0
chr14	90384778	90386431	prostate_normal.28897	0	.	90384778	90386431	0	1	1653	0
chr14	90384818	90387108	B_Cells_Pritchard.1756355	0	.	90384818	90387108	0	1	2290	0
chr14	90385204	90386456	CD4_Plagnol_activated.31858	0	.	90385204	90386456	0	1	1252	0
chr14	90385721	90386450	MeWo_Garraway.17880	0	.	90385721	90386450	0	1	729	0
chr14	90386087	90386433	CD4_Plagnol_resting.30959	0	.	90386087	90386433	0	1	346	0
chr14	90389060	90397182	REMC_LuminalBreast.51474	0	.	90389060	90397182	0	1	8122	0
chr14	90389793	90397136	REMC_MyoepithelialBreast.48044	0	.	90389793	90397136	0	1	7343	0
chr14	90392582	90395855	H1_polyA+.58261	0	.	90392582	90395855	0	1	3273	0
chr14	90392622	90394444	MIP101.34597	0	.	90392622	90394444	0	1	1822	0
chr14	90392632	90395897	melanoma_Garraway_short_term_cultures.33698	0	.	90392632	90395897	0	1	3265	0
chr14	90392721	90394242	B_Cells_Pritchard.1756379	0	.	90392721	90394242	0	1	1521	0
chr14	90392756	90393276	CD4_Plagnol_activated.31885	0	.	90392756	90393276	0	1	520	0
chr14	90392795	90394109	B_cells_Cheung.100749	0	.	90392795	90394109	0	1	1314	0
chr14	90393435	90396970	HIT000046658	0	-	90393435	90396970	0	1	3535	0
chr14	90397622	90399328	REMC_MyoepithelialBreast.48045	0	.	90397622	90399328	0	1	1706	0
chr14	90791843	90792572	prostate_carcinoma.49788	0	.	90791843	90792572	0	1	729	0
chr14	90792140	90793745	REMC_MyoepithelialBreast.48055	0	.	90792140	90793745	0	1	1605	0
chr14	90798900	90799736	CD4_Plagnol_resting.31502	0	.	90798900	90799736	0	1	836	0
chr14	90800146	90800795	B_cells_Cheung.100903	0	.	90800146	90800795	0	1	649	0
chr14	90800884	90802197	REMC_LuminalBreast.51261	0	.	90800884	90802197	0	1	1313	0
chr14	90800917	90801696	CD4_Plagnol_activated.32246	0	.	90800917	90801696	0	1	779	0
chr14	90802039	90802872	B_cells_Cheung.100905	0	.	90802039	90802872	0	1	833	0
chr14	90802475	90803788	REMC_LuminalBreast.51262	0	.	90802475	90803788	0	1	1313	0
chr14	90803552	90804214	CD4_Plagnol_resting.31503	0	.	90803552	90804214	0	1	662	0
chr14	90805253	90805719	CD4_Plagnol_activated.32251	0	.	90805253	90805719	0	1	466	0
chr14	90954221	90957458	prostate_carcinoma.49762	0	+	90954221	90957458	0	2	216,413	0,2824
chr14	90963791	90964386	K562.22619	0	.	90963791	90964386	0	1	595	0
chr14	90974144	90976958	REMC_LuminalBreast.51268	0	.	90974144	90976958	0	1	2814	0
chr14	90977892	90979056	REMC_LuminalBreast.59578	0	.	90977892	90979056	0	1	1164	0
chr14	90983205	90984327	REMC_MyoepithelialBreast.48065	0	.	90983205	90984327	0	1	1122	0
chr14	90983704	90984075	B_cells_Cheung.100919	0	.	90983704	90984075	0	1	371	0
chr14	90984641	90986268	REMC_LuminalBreast.59582	0	.	90984641	90986268	0	1	1627	0
chr14	90986808	90991252	REMC_LuminalBreast.59583	0	.	90986808	90991252	0	1	4444	0
chr14	90988526	90988832	B_cells_Cheung.100923	0	.	90988526	90988832	0	1	306	0
chr14	90988576	90990937	REMC_MyoepithelialBreast.48067	0	.	90988576	90990937	0	1	2361	0
chr14	91048302	91048647	B_cells_Cheung.100959	0	.	91048302	91048647	0	1	345	0
chr14	91054326	91058727	REMC_LuminalBreast.59597	0	.	91054326	91058727	0	1	4401	0
chr14	91067089	91070615	REMC_LuminalBreast.59601	0	.	91067089	91070615	0	1	3526	0
chr14	91075668	91076672	REMC_LuminalBreast.59603	0	.	91075668	91076672	0	1	1004	0
chr14	91089923	91091224	prostate_carcinoma.49791	0	.	91089923	91091224	0	1	1301	0
chr14	91089962	91092586	REMC_MyoepithelialBreast.48211	0	.	91089962	91092586	0	1	2624	0
chr14	91090232	91090787	BT474_Burge_Thompson.16494	0	.	91090232	91090787	0	1	555	0
chr14	91094173	91097794	REMC_LuminalBreast.59610	0	.	91094173	91097794	0	1	3621	0
chr14	91097205	91097751	REMC_MyoepithelialBreast.48217	0	.	91097205	91097751	0	1	546	0
chr14	91099911	91103553	REMC_LuminalBreast.59614	0	.	91099911	91103553	0	1	3642	0
chr14	91103728	91105652	REMC_MyoepithelialBreast.48221	0	.	91103728	91105652	0	1	1924	0
chr14	91307334	91308495	REMC_BreastStem.25924	0	.	91307334	91308495	0	1	1161	0
chr14	91307955	91309491	ZR751_Thompson.12032	0	.	91307955	91309491	0	1	1536	0
chr14	91308140	91309459	CD4_Plagnol_resting.31041	0	.	91308140	91309459	0	1	1319	0
chr14	91310451	91313349	CD4_Snyder.39806	0	.	91310451	91313349	0	1	2898	0
chr14	91312822	91313600	ZR751_Thompson.12033	0	.	91312822	91313600	0	1	778	0
chr14	91498048	91498742	B_Cells_Pritchard.1760355	0	+	91498048	91498742	0	1	694	0
chr14	91500745	91501066	skeletal_muscle_Raymond.52059	0	.	91500745	91501066	0	1	321	0
chr14	91500745	91501095	ovary_Raymond.138542	0	.	91500745	91501095	0	1	350	0
chr14	91500751	91501096	spleen_Raymond.106479	0	.	91500751	91501096	0	1	345	0
chr14	91500818	91501264	B_cells_Cheung.100988	0	.	91500818	91501264	0	1	446	0
chr14	91578904	91581173	REMC_LuminalBreast.51283	0	.	91578904	91581173	0	1	2269	0
chr14	91578911	91579485	H1_polyA+.58417	0	.	91578911	91579485	0	1	574	0
chr14	91579605	91581258	REMC_BreastStem.25946	0	.	91579605	91581258	0	1	1653	0
chr14	91579607	91581697	H1_polyA+.58418	0	.	91579607	91581697	0	1	2090	0
chr14	91579613	91581669	REMC_MyoepithelialBreast.48171	0	.	91579613	91581669	0	1	2056	0
chr14	91579697	91580352	HepG2_Caltech_ENCODE.18292	0	.	91579697	91580352	0	1	655	0
chr14	91580079	91581059	HeLa_polyA+_Chen.18046	0	.	91580079	91581059	0	1	980	0
chr14	91581862	91584188	H1_polyA+.58419	0	.	91581862	91584188	0	1	2326	0
chr14	91581892	91582383	REMC_MyoepithelialBreast.48172	0	.	91581892	91582383	0	1	491	0
chr14	91583207	91583712	REMC_LuminalBreast.51285	0	.	91583207	91583712	0	1	505	0
chr14	91583209	91584199	B_cells_Cheung.101055	0	.	91583209	91584199	0	3	223,236,395	0,284,595
chr14	91585890	91586242	MIP101.34701	0	.	91585890	91586242	0	1	352	0
chr14	91585893	91586320	NEC_from_H9.37876	0	.	91585893	91586320	0	1	427	0
chr14	91743338	91744683	H1_polyA+.58444	0	+	91743338	91744683	0	2	99,303	0,1042
chr14	91744740	91746306	H1_polyA+.58445	0	.	91744740	91746306	0	1	1566	0
chr14	92039125	92039536	B_Cells_Pritchard.1759983	0	.	92039125	92039536	0	1	411	0
chr14	92226090	92226987	prostate_carcinoma.49883	0	.	92226090	92226987	0	1	897	0
chr14	92226096	92227513	CD4_Plagnol_activated.32058	0	.	92226096	92227513	0	1	1417	0
chr14	92226395	92227119	liver_polyA+.69309	0	.	92226395	92227119	0	1	724	0
chr14	92227805	92230374	CD4_Plagnol_resting.31129	0	.	92227805	92230374	0	1	2569	0
chr14	92227808	92228696	CD4_Plagnol_activated.32059	0	.	92227808	92228696	0	1	888	0
chr14	92227922	92229748	melanoma_Garraway_short_term_cultures.33852	0	.	92227922	92229748	0	1	1826	0
chr14	92227981	92231522	prostate_carcinoma.49884	0	.	92227981	92231522	0	1	3541	0
chr14	92227986	92229629	prostate_normal.29077	0	.	92227986	92229629	0	1	1643	0
chr14	92228051	92230046	B_cells_Cheung.101569	0	.	92228051	92230046	0	1	1995	0
chr14	92228068	92228956	HepG2_Caltech_ENCODE.18310	0	.	92228068	92228956	0	1	888	0
chr14	92228080	92232037	REMC_BreastStem.25964	0	.	92228080	92232037	0	1	3957	0
chr14	92228415	92229218	lymph_node_Burge.24185	0	.	92228415	92229218	0	1	803	0
chr14	92228635	92229173	liver_polyA+.69311	0	.	92228635	92229173	0	1	538	0
chr14	92228812	92229301	CD4_Plagnol_activated.31995	0	.	92228812	92229301	0	1	489	0
chr14	92229025	92232050	REMC_MyoepithelialBreast.48206	0	.	92229025	92232050	0	1	3025	0
chr14	92231651	92232376	CD4_Plagnol_resting.31132	0	.	92231651	92232376	0	1	725	0
chr14	92232655	92232982	B_cells_Cheung.101572	0	.	92232655	92232982	0	1	327	0
chr14	92233089	92235148	REMC_MyoepithelialBreast.48207	0	.	92233089	92235148	0	1	2059	0
chr14	92233187	92235986	REMC_BreastStem.25965	0	.	92233187	92235986	0	1	2799	0
chr14	92233240	92234778	prostate_carcinoma.49885	0	.	92233240	92234778	0	1	1538	0
chr14	92233248	92234528	HepG2_Caltech_ENCODE.18311	0	.	92233248	92234528	0	1	1280	0
chr14	92233248	92234932	B_cells_Cheung.101573	0	.	92233248	92234932	0	1	1684	0
chr14	92233733	92234406	CD4_Plagnol_resting.31135	0	.	92233733	92234406	0	1	673	0
chr14	92233766	92234333	lymph_node_Burge.24187	0	.	92233766	92234333	0	1	567	0
chr14	92237642	92237955	B_cells_Cheung.101574	0	.	92237642	92237955	0	1	313	0
chr14	92287082	92287742	B_cells_Cheung.101121	0	.	92287082	92287742	0	1	660	0
chr14	92287090	92288956	B_Cells_Pritchard.1760627	0	.	92287090	92288956	0	1	1866	0
chr14	92308478	92309830	B_Cells_Pritchard.1760703	0	.	92308478	92309830	0	1	1352	0
chr14	92396952	92397478	B_cells_Cheung.101212	0	.	92396952	92397478	0	1	526	0
chr14	92436242	92437052	melanoma_Garraway_short_term_cultures.33872	0	.	92436242	92437052	0	1	810	0
chr14	92450898	92453753	melanoma_Garraway_short_term_cultures.33877	0	.	92450898	92453753	0	1	2855	0
chr14	92451019	92454142	REMC_MyoepithelialBreast.48299	0	-	92451019	92454142	0	2	681,1897	0,1226
chr14	92451063	92452550	HeLa_polyA+_Chen.18068	0	.	92451063	92452550	0	1	1487	0
chr14	92451710	92454142	REMC_MyoepithelialBreast.48300	0	.	92451710	92454142	0	1	2432	0
chr14	92452607	92454188	HeLa_polyA+_Chen.18069	0	.	92452607	92454188	0	1	1581	0
chr14	92454271	92456700	HeLa_polyA+_Chen.18070	0	.	92454271	92456700	0	1	2429	0
chr14	92455592	92456533	REMC_MyoepithelialBreast.48301	0	.	92455592	92456533	0	1	941	0
chr14	92456904	92457584	B_Cells_Pritchard.1761095	0	.	92456904	92457584	0	1	680	0
chr14	92654272	92654714	B_cells_Cheung.101228	0	.	92654272	92654714	0	1	442	0
chr14	92696257	92696904	B_Cells_Pritchard.1761733	0	.	92696257	92696904	0	1	647	0
chr14	92766913	92770046	pHIT000113672	0	+	92766913	92770046	0	3	129,237,192	0,1554,2941
chr14	92770594	92771872	B_cells_Cheung.101404	0	.	92770594	92771872	0	1	1278	0
chr14	92770598	92772073	B_Cells_Pritchard.1761905	0	.	92770598	92772073	0	1	1475	0
chr14	93248237	93249246	brain_AmbionMAQC.21939	0	.	93248237	93249246	0	1	1009	0
chr14	93431859	93433858	HIT000013923	0	+	93431859	93433858	0	1	1999	0
chr14	93440814	93445226	HIT000091929	0	-	93440814	93445226	0	3	673,143,209	0,3254,4203
chr14	93440826	93445255	HIT000045616	0	-	93440826	93445255	0	3	661,143,238	0,3242,4191
chr14	93513937	93515930	B_Cells_Pritchard.1763751	0	.	93513937	93515930	0	1	1993	0
chr14	93515240	93518773	REMC_MyoepithelialBreast.48375	0	.	93515240	93518773	0	1	3533	0
chr14	93516133	93519117	B_Cells_Pritchard.1763753	0	.	93516133	93519117	0	1	2984	0
chr14	93516987	93517866	REMC_BreastStem.26022	0	.	93516987	93517866	0	1	879	0
chr14	93518680	93519152	A549_Myers.39349	0	.	93518680	93519152	0	1	472	0
chr14	93518884	93520023	REMC_MyoepithelialBreast.48376	0	.	93518884	93520023	0	1	1139	0
chr14	93519193	93523148	Rinn_00022840	0	-	93519193	93523148	0	2	679,373	0,3582
chr14	93527260	93528048	B_cells_Cheung.101377	0	.	93527260	93528048	0	1	788	0
chr14	93532111	93532464	B_cells_Cheung.101381	0	.	93532111	93532464	0	1	353	0
chr14	93546687	93547358	REMC_BreastStem.26089	0	.	93546687	93547358	0	1	671	0
chr14	93549301	93555196	REMC_LuminalBreast.51480	0	.	93549301	93555196	0	1	5895	0
chr14	93553374	93555153	REMC_BreastStem.26091	0	.	93553374	93555153	0	1	1779	0
chr14	93555320	93556754	REMC_BreastStem.26092	0	.	93555320	93556754	0	1	1434	0
chr14	93556898	93559301	REMC_BreastStem.26093	0	.	93556898	93559301	0	1	2403	0
chr14	93559526	93561191	REMC_BreastStem.26094	0	.	93559526	93561191	0	1	1665	0
chr14	93660098	93661015	B_Cells_Pritchard.1764111	0	+	93660098	93661015	0	1	917	0
chr14	93660127	93660964	B_cells_Cheung.101407	0	.	93660127	93660964	0	1	837	0
chr14	93660412	93661086	CD4_Plagnol_resting.31207	0	.	93660412	93661086	0	1	674	0
chr14	93959524	93960112	HepG2_Caltech_ENCODE.18371	0	.	93959524	93960112	0	1	588	0
chr14	93959648	93962139	B_cells_Cheung.101442	0	.	93959648	93962139	0	1	2491	0
chr14	93960984	93962132	HepG2_Caltech_ENCODE.18372	0	.	93960984	93962132	0	1	1148	0
chr14	93962370	93964457	B_Cells_Pritchard.1764845	0	.	93962370	93964457	0	1	2087	0
chr14	93962660	93964463	B_cells_Cheung.101443	0	.	93962660	93964463	0	1	1803	0
chr14	93962807	93964448	REMC_BreastStem.26057	0	.	93962807	93964448	0	1	1641	0
chr14	93967753	93968383	HepG2_Caltech_ENCODE.18373	0	.	93967753	93968383	0	1	630	0
chr14	93970858	93971925	HepG2_Caltech_ENCODE.18374	0	.	93970858	93971925	0	1	1067	0
chr14	93973201	93973894	HepG2_Caltech_ENCODE.18375	0	.	93973201	93973894	0	1	693	0
chr14	94061316	94063159	HepG2_Caltech_ENCODE.20222	0	.	94061316	94063159	0	1	1843	0
chr14	94087829	94089057	REMC_MyoepithelialBreast.48368	0	.	94087829	94089057	0	1	1228	0
chr14	94092986	94094421	REMC_MyoepithelialBreast.48371	0	.	94092986	94094421	0	1	1435	0
chr14	94093755	94095528	liver_polyA+.69509	0	.	94093755	94095528	0	1	1773	0
chr14	94093760	94095041	kidney_Gilad.44933	0	.	94093760	94095041	0	1	1281	0
chr14	94240003	94240537	B_Cells_Pritchard.1765503	0	.	94240003	94240537	0	1	534	0
chr14	94297224	94300230	H1_polyA+.58624	0	.	94297224	94300230	0	1	3006	0
chr14	94297414	94301397	REMC_BreastStem.26063	0	.	94297414	94301397	0	1	3983	0
chr14	94297468	94300201	prostate_carcinoma.50041	0	.	94297468	94300201	0	1	2733	0
chr14	94297470	94302070	MCF7_Burge_Thompson.14955	0	.	94297470	94302070	0	1	4600	0
chr14	94297675	94299686	T47D_Burge_Thompson.14371	0	.	94297675	94299686	0	1	2011	0
chr14	94297842	94299074	BT474_Burge_Thompson.16603	0	.	94297842	94299074	0	1	1232	0
chr14	94297869	94298713	ZR751_Thompson.12109	0	.	94297869	94298713	0	1	844	0
chr14	94297903	94298828	prostate_normal.29145	0	.	94297903	94298828	0	1	925	0
chr14	94299881	94300736	REMC_MyoepithelialBreast.48401	0	.	94299881	94300736	0	1	855	0
chr14	94308166	94310418	MCF7_Burge_Thompson.14957	0	.	94308166	94310418	0	1	2252	0
chr14	94420566	94421122	A549_Myers.39399	0	.	94420566	94421122	0	1	556	0
chr14	94420788	94421390	brain_AmbionMAQC.21985	0	.	94420788	94421390	0	1	602	0
chr14	94421919	94422239	A549_Myers.39400	0	.	94421919	94422239	0	1	320	0
chr14	94423573	94423935	A549_Myers.39401	0	.	94423573	94423935	0	1	362	0
chr14	94425474	94426128	A549_Myers.39402	0	.	94425474	94426128	0	1	654	0
chr14	94425484	94426352	prostate_carcinoma.50048	0	.	94425484	94426352	0	1	868	0
chr14	94425489	94426992	BT474_Burge_Thompson.16610	0	.	94425489	94426992	0	1	1503	0
chr14	94425492	94427253	B_Cells_Pritchard.1765939	0	+	94425492	94427253	0	2	446,1271	0,490
chr14	94425500	94426977	ZR751_Thompson.12114	0	.	94425500	94426977	0	1	1477	0
chr14	94425645	94426806	MCF7_Burge_Thompson.14959	0	.	94425645	94426806	0	1	1161	0
chr14	94426439	94426900	prostate_carcinoma.50049	0	.	94426439	94426900	0	1	461	0
chr14	94476171	94476482	pHIT000113695	0	-	94476171	94476482	0	1	311	0
chr14	94533188	94533549	B_Cells_Pritchard.1766247	0	.	94533188	94533549	0	1	361	0
chr14	94533209	94533713	BT474_Burge_Thompson.16611	0	.	94533209	94533713	0	1	504	0
chr14	94546532	94547178	B_Cells_Pritchard.1766299	0	.	94546532	94547178	0	1	646	0
chr14	94695784	94705665	B_cells_Cheung.101493	0	.	94695784	94705665	0	1	9881	0
chr14	94699877	94701652	MIP101.34773	0	.	94699877	94701652	0	1	1775	0
chr14	94702312	94705963	REMC_LuminalBreast.51931	0	.	94702312	94705963	0	1	3651	0
chr14	94702721	94703653	MIP101.34779	0	.	94702721	94703653	0	1	932	0
chr14	94702747	94704459	H1_polyA+.58753	0	.	94702747	94704459	0	1	1712	0
chr14	94702868	94704356	B_Cells_Pritchard.1766765	0	-	94702868	94704356	0	2	864,464	0,1024
chr14	94702974	94703541	brain_AmbionMAQC.21989	0	.	94702974	94703541	0	1	567	0
chr14	94707418	94716156	B_Cells_Pritchard.1766783	0	-	94707418	94716156	0	3	972,155,938	0,7527,7800
chr14	94709851	94716050	HIT000057545	0	+	94709851	94716050	0	1	6199	0
chr14	94713195	94715189	REMC_LuminalBreast.51935	0	.	94713195	94715189	0	1	1994	0
chr14	94713246	94716156	B_Cells_Pritchard.1766781	0	+	94713246	94716156	0	3	172,117,1472	0,444,1438
chr14	94713279	94715497	REMC_MyoepithelialBreast.48415	0	.	94713279	94715497	0	1	2218	0
chr14	94713564	94714156	MIP101.34783	0	.	94713564	94714156	0	1	592	0
chr14	94713572	94716015	ENST00000439999	0	+	94713572	94716015	0	2	1896,427	0,2016
chr14	94713572	94716023	HIT000047052	0	+	94713572	94716023	0	2	1896,435	0,2016
chr14	94713732	94714969	HIT000500671	0	+	94713732	94714969	0	1	1237	0
chr14	94714271	94717528	B_Cells_Pritchard.1766797	0	+	94714271	94717528	0	2	71,261	0,2996
chr14	94714410	94714840	HepG2_Caltech_ENCODE.18391	0	.	94714410	94714840	0	1	430	0
chr14	94714642	94716012	prostate_carcinoma.50184	0	.	94714642	94716012	0	2	589,661	0,709
chr14	94714678	94716152	MIP101.34777	0	.	94714678	94716152	0	1	1474	0
chr14	94714696	94715230	prostate_normal.29205	0	.	94714696	94715230	0	1	534	0
chr14	94716399	94716946	B_cells_Cheung.101478	0	.	94716399	94716946	0	1	547	0
chr14	94856254	94867612	Rinn_00022612	0	+	94856254	94867612	0	4	321,101,227,261	0,914,9277,11097
chr14	94856287	94866493	Rinn_00022613	0	+	94856287	94866493	0	2	288,962	0,9244
chr14	94856400	94865664	testes_Burge.26139	0	+	94856400	94865664	0	2	175,132	0,9132
chr14	94862255	94864099	B_cells_Cheung.101498	0	-	94862255	94864099	0	2	672,174	0,1670
chr14	94862258	94864174	B_Cells_Pritchard.1767153	0	-	94862258	94864174	0	2	669,249	0,1667
chr14	94864216	94865013	B_cells_Cheung.101501	0	.	94864216	94865013	0	1	797	0
chr14	94864290	94865055	B_Cells_Pritchard.1767155	0	.	94864290	94865055	0	1	765	0
chr14	94866243	94898296	pHIT000113701	0	-	94866243	94898296	0	3	104,119,134	0,3895,31919
chr14	94867096	94901242	pHIT000113702	0	-	94867096	94901242	0	5	71,119,64,134,74	0,3042,25601,31066,34072
chr14	94872506	94874852	BT474_Burge_Thompson.16614	0	.	94872506	94874852	0	1	2346	0
chr14	94872876	94875078	prostate_carcinoma.50119	0	.	94872876	94875078	0	1	2202	0
chr14	94874300	94874886	prostate_normal.29163	0	.	94874300	94874886	0	1	586	0
chr14	94874304	94874884	B_Cells_Pritchard.1767193	0	.	94874304	94874884	0	1	580	0
chr14	94875140	94875842	prostate_normal.29164	0	.	94875140	94875842	0	1	702	0
chr14	94875343	94875903	prostate_carcinoma.50120	0	.	94875343	94875903	0	1	560	0
chr14	94897455	94898345	H1_polyA+.58637	0	.	94897455	94898345	0	1	890	0
chr14	94905294	94908112	prostate_carcinoma.50122	0	.	94905294	94908112	0	1	2818	0
chr14	94907387	94935234	pHIT000113703	0	-	94907387	94935234	0	2	313,80	0,27767
chr14	94908757	94910978	prostate_carcinoma.50123	0	.	94908757	94910978	0	1	2221	0
chr14	94910507	94910954	prostate_normal.29168	0	.	94910507	94910954	0	1	447	0
chr14	94911250	94912530	prostate_carcinoma.50124	0	.	94911250	94912530	0	1	1280	0
chr14	94911353	94912054	prostate_normal.29169	0	.	94911353	94912054	0	1	701	0
chr14	94913127	94914709	prostate_carcinoma.50125	0	.	94913127	94914709	0	1	1582	0
chr14	94916316	94938672	prostate_carcinoma.50127	0	+	94916316	94938672	0	2	6072,1620	0,20736
chr14	94918680	94919723	prostate_normal.29170	0	.	94918680	94919723	0	1	1043	0
chr14	94920281	94920816	prostate_normal.29171	0	.	94920281	94920816	0	1	535	0
chr14	94920919	94922084	prostate_normal.29172	0	.	94920919	94922084	0	1	1165	0
chr14	94924008	94925219	prostate_carcinoma.50131	0	.	94924008	94925219	0	1	1211	0
chr14	94925876	94926994	Rinn_00022844	0	-	94925876	94926994	0	2	419,39	0,1079
chr14	94930156	94930727	B_Cells_Pritchard.1767431	0	.	94930156	94930727	0	1	571	0
chr14	94930406	94930723	prostate_carcinoma.50134	0	.	94930406	94930723	0	1	317	0
chr14	94933256	94936110	prostate_normal.29176	0	.	94933256	94936110	0	1	2854	0
chr14	94933262	94936766	prostate_carcinoma.50126	0	-	94933262	94936766	0	2	2839,61	0,3443
chr14	94933615	94934382	A549_Myers.39444	0	.	94933615	94934382	0	1	767	0
chr14	94933631	94934483	B_Cells_Pritchard.1767447	0	.	94933631	94934483	0	1	852	0
chr14	94934630	94934948	B_Cells_Pritchard.1767449	0	.	94934630	94934948	0	1	318	0
chr14	94940000	94940915	B_Cells_Pritchard.1767475	0	.	94940000	94940915	0	1	915	0
chr14	94943244	94949238	prostate_carcinoma.50128	0	.	94943244	94949238	0	1	5994	0
chr14	94943332	94945778	HIT000008203	0	-	94943332	94945778	0	1	2446	0
chr14	94943340	94946180	HIT000033706	0	-	94943340	94946180	0	1	2840	0
chr14	94943353	94951806	CD4_Plagnol_resting.31267	0	.	94943353	94951806	0	1	8453	0
chr14	94943354	94948957	melanoma_Garraway_short_term_cultures.34002	0	.	94943354	94948957	0	1	5603	0
chr14	94943356	94946180	NR_026779	0	-	94943356	94946180	0	1	2824	0
chr14	94943358	94946180	ENST00000464767	0	-	94943358	94946180	0	1	2822	0
chr14	94943362	94949342	REMC_MyoepithelialBreast.48465	0	.	94943362	94949342	0	1	5980	0
chr14	94943363	94951875	CD4_Plagnol_activated.32135	0	.	94943363	94951875	0	1	8512	0
chr14	94943364	94946728	CD4_Snyder.40019	0	.	94943364	94946728	0	1	3364	0
chr14	94943365	94947116	liver_polyA+.69700	0	.	94943365	94947116	0	1	3751	0
chr14	94943370	94945839	brain_AmbionMAQC.22013	0	.	94943370	94945839	0	1	2469	0
chr14	94943448	94950940	prostate_normal.29174	0	.	94943448	94950940	0	1	7492	0
chr14	94943456	94950940	prostate_normal.29175	0	-	94943456	94950940	0	2	4626,132	0,7352
chr14	94943489	94945412	T47D_Burge_Thompson.14387	0	.	94943489	94945412	0	1	1923	0
chr14	94944578	94946088	MB435_Burge.20647	0	.	94944578	94946088	0	1	1510	0
chr14	94944597	94945910	breast_Burge.19727	0	.	94944597	94945910	0	1	1313	0
chr14	94944599	94945438	lymph_node_Burge.24128	0	.	94944599	94945438	0	1	839	0
chr14	94944674	94945427	adipose_Burge.19179	0	.	94944674	94945427	0	1	753	0
chr14	94944674	94945428	colon_Burge.18719	0	.	94944674	94945428	0	1	754	0
chr14	94944677	94945205	MCF7_Burge_Thompson.14975	0	.	94944677	94945205	0	1	528	0
chr14	94944831	94947343	MDAMB231_Thompson.11283	0	.	94944831	94947343	0	1	2512	0
chr14	94944983	94949224	REMC_LuminalBreast.51678	0	.	94944983	94949224	0	1	4241	0
chr14	94945156	94945729	HIT000268187	0	-	94945156	94945729	0	1	573	0
chr14	94945374	94946195	K562.22670	0	.	94945374	94946195	0	1	821	0
chr14	94945499	94947229	MDAMB468_Thompson.12292	0	.	94945499	94947229	0	1	1730	0
chr14	94945508	94946431	BT474_Burge_Thompson.16620	0	.	94945508	94946431	0	1	923	0
chr14	94945945	94947173	brain_AmbionMAQC.22014	0	.	94945945	94947173	0	1	1228	0
chr14	94945958	94947385	lymph_node_Burge.24132	0	.	94945958	94947385	0	1	1427	0
chr14	94945990	94946757	breast_Burge.19723	0	.	94945990	94946757	0	1	767	0
chr14	94946004	94947372	T47D_Burge_Thompson.14389	0	.	94946004	94947372	0	1	1368	0
chr14	94946209	94947321	MB435_Burge.20645	0	.	94946209	94947321	0	1	1112	0
chr14	94946793	94947366	CD4_Snyder.40018	0	.	94946793	94947366	0	1	573	0
chr14	94947116	94948506	liver_polyA+.69702	0	.	94947116	94948506	0	1	1390	0
chr14	94947326	94948234	MDAMB468_Thompson.12294	0	.	94947326	94948234	0	1	908	0
chr14	94947389	94948955	MeWo_Garraway.18019	0	.	94947389	94948955	0	1	1566	0
chr14	94947436	94948626	CD4_Snyder.40021	0	.	94947436	94948626	0	1	1190	0
chr14	94947459	94948106	lymph_node_Burge.24131	0	.	94947459	94948106	0	1	647	0
chr14	94947463	94948471	BT474_Burge_Thompson.16621	0	.	94947463	94948471	0	1	1008	0
chr14	94947466	94949293	MB435_Burge.20642	0	.	94947466	94949293	0	1	1827	0
chr14	94947467	94949223	T47D_Burge_Thompson.14390	0	.	94947467	94949223	0	1	1756	0
chr14	94947866	94949225	MDAMB231_Thompson.11284	0	.	94947866	94949225	0	1	1359	0
chr14	94947870	94949236	brain_AmbionMAQC.22011	0	.	94947870	94949236	0	1	1366	0
chr14	94948590	94948939	liver_polyA+.69703	0	.	94948590	94948939	0	1	349	0
chr14	94948631	94949025	lymph_node_Burge.24129	0	.	94948631	94949025	0	1	394	0
chr14	94949323	94951847	MDAMB231_Thompson.11285	0	.	94949323	94951847	0	1	2524	0
chr14	94949457	94951986	REMC_LuminalBreast.51679	0	.	94949457	94951986	0	1	2529	0
chr14	94949500	94949821	MDAMB468_Thompson.12293	0	.	94949500	94949821	0	1	321	0
chr14	94949569	94951360	melanoma_Garraway_short_term_cultures.34003	0	.	94949569	94951360	0	1	1791	0
chr14	94950659	94951790	CD4_Snyder.40024	0	.	94950659	94951790	0	1	1131	0
chr14	94950891	94951601	T47D_Burge_Thompson.14392	0	.	94950891	94951601	0	1	710	0
chr14	94951094	94951736	prostate_normal.29179	0	.	94951094	94951736	0	1	642	0
chr14	95024177	95025160	REMC_LuminalBreast.51686	0	.	95024177	95025160	0	1	983	0
chr14	95024223	95025256	B_Cells_Pritchard.1767569	0	.	95024223	95025256	0	1	1033	0
chr14	95025357	95027525	B_Cells_Pritchard.1767571	0	.	95025357	95027525	0	1	2168	0
chr14	95026877	95027832	REMC_LuminalBreast.51687	0	.	95026877	95027832	0	1	955	0
chr14	95028017	95029879	B_Cells_Pritchard.1767575	0	.	95028017	95029879	0	1	1862	0
chr14	95036215	95047682	B_Cells_Pritchard.1767581	0	+	95036215	95047682	0	3	10481,589,75	0,10662,11392
chr14	95045317	95046504	REMC_MyoepithelialBreast.48476	0	.	95045317	95046504	0	1	1187	0
chr14	95050385	95056987	B_Cells_Pritchard.1767593	0	+	95050385	95056987	0	2	1479,1450	0,5152
chr14	95050899	95052302	REMC_LuminalBreast.51692	0	.	95050899	95052302	0	1	1403	0
chr14	95052974	95053987	HepG2_Caltech_ENCODE.18401	0	.	95052974	95053987	0	1	1013	0
chr14	95055195	95056956	HepG2_Caltech_ENCODE.18403	0	.	95055195	95056956	0	1	1761	0
chr14	95055580	95056330	prostate_carcinoma.50155	0	.	95055580	95056330	0	1	750	0
chr14	95057941	95060347	prostate_carcinoma.50156	0	.	95057941	95060347	0	1	2406	0
chr14	95058032	95060547	HIT000043232	0	+	95058032	95060547	0	1	2515	0
chr14	95058105	95068510	khalil_749	0	.	95058105	95068510	0	5	1231,331,1435,917,111	0,1466,5890,8181,10294
chr14	95058112	95059463	prostate_normal.29191	0	.	95058112	95059463	0	1	1351	0
chr14	95058119	95058482	liver_polyA+.69728	0	.	95058119	95058482	0	1	363	0
chr14	95058122	95058455	lymph_node_Burge.24156	0	.	95058122	95058455	0	1	333	0
chr14	95059793	95060461	B_Cells_Pritchard.1767609	0	.	95059793	95060461	0	1	668	0
chr14	95060130	95061361	HepG2_Caltech_ENCODE.18405	0	.	95060130	95061361	0	1	1231	0
chr14	95060190	95063142	brain_AmbionMAQC.22018	0	.	95060190	95063142	0	1	2952	0
chr14	95083176	95085131	REMC_MyoepithelialBreast.48486	0	.	95083176	95085131	0	1	1955	0
chr14	95083803	95087231	REMC_LuminalBreast.51695	0	.	95083803	95087231	0	1	3428	0
chr14	95109675	95118364	Rinn_00022614	0	+	95109675	95118364	0	4	97,178,55,857	0,3842,7181,7832
chr14	95160525	95161874	B_Cells_Pritchard.1767897	0	.	95160525	95161874	0	1	1349	0
chr14	95168138	95169759	B_Cells_Pritchard.1767923	0	.	95168138	95169759	0	1	1621	0
chr14	95171660	95172506	B_Cells_Pritchard.1767929	0	.	95171660	95172506	0	1	846	0
chr14	95175821	95186528	B_Cells_Pritchard.1767937	0	.	95175821	95186528	0	1	10707	0
chr14	95178373	95178702	B_cells_Cheung.101588	0	.	95178373	95178702	0	1	329	0
chr14	95183256	95184990	melanoma_Garraway_short_term_cultures.34027	0	.	95183256	95184990	0	1	1734	0
chr14	95183362	95183813	B_cells_Cheung.101627	0	.	95183362	95183813	0	1	451	0
chr14	95230218	95231185	B_Cells_Pritchard.1767989	0	.	95230218	95231185	0	1	967	0
chr14	95230237	95231791	B_cells_Cheung.101659	0	.	95230237	95231791	0	1	1554	0
chr14	95230255	95231689	H1_polyA+.58644	0	.	95230255	95231689	0	1	1434	0
chr14	95233497	95234367	B_cells_Cheung.101662	0	.	95233497	95234367	0	1	870	0
chr14	95261018	95262459	B_Cells_Pritchard.1768047	0	.	95261018	95262459	0	1	1441	0
chr14	95277257	95279045	B_Cells_Pritchard.1768087	0	.	95277257	95279045	0	1	1788	0
chr14	95282214	95283757	B_Cells_Pritchard.1768101	0	.	95282214	95283757	0	1	1543	0
chr14	95289796	95292639	B_Cells_Pritchard.1768125	0	.	95289796	95292639	0	1	2843	0
chr14	95290099	95290415	B_cells_Cheung.101649	0	.	95290099	95290415	0	1	316	0
chr14	95291920	95293746	HIT000291643	0	-	95291920	95293746	0	1	1826	0
chr14	95409868	95412192	H1_polyA+.58712	0	.	95409868	95412192	0	1	2324	0
chr14	95412706	95460841	H1_polyA+.58713	0	+	95412706	95460841	0	3	561,9,1971	0,45360,46164
chr14	95412748	95459548	H9_polyA-_Chen.7313	0	+	95412748	95459548	0	2	519,678	0,46122
chr14	95413697	95414008	H1_rRNA-depleted_UCSD_REMC.45642	0	.	95413697	95414008	0	1	311	0
chr14	95414007	95459181	khalil_752	0	.	95414007	95459181	0	10	293,89,88,114,313,63,203,235,308,51	0,5769,6103,6341,8167,11866,16454,17324,22181,45123
chr14	95428935	95429447	H1_rRNA-depleted_UCSD_REMC.45648	0	.	95428935	95429447	0	1	512	0
chr14	95437827	95438247	H1_rRNA-depleted_UCSD_REMC.45652	0	.	95437827	95438247	0	1	420	0
chr14	95476454	95479176	H1_polyA+.58718	0	.	95476454	95479176	0	1	2722	0
chr14	95575327	95575964	A549_Myers.39464	0	.	95575327	95575964	0	1	637	0
chr14	95575362	95626427	B_cells_Cheung.101652	0	+	95575362	95626427	0	2	255,3827	0,47238
chr14	95575396	95629967	H9_polyA+.22894	0	+	95575396	95629967	0	2	221,7367	0,47204
chr14	95575399	95631590	H1_polyA+.58727	0	+	95575399	95631590	0	2	218,8990	0,47201
chr14	95575405	95631168	T47D_Burge_Thompson.14404	0	+	95575405	95631168	0	2	212,8568	0,47195
chr14	95575407	95626280	melanoma_Garraway_short_term_cultures.34031	0	+	95575407	95626280	0	2	210,3680	0,47193
chr14	95575412	95626368	MCF7_Burge_Thompson.14987	0	+	95575412	95626368	0	2	205,3768	0,47188
chr14	95575412	95629665	brain_AmbionMAQC.22098	0	+	95575412	95629665	0	2	205,7065	0,47188
chr14	95575414	95629888	NR_023938	0	+	95575414	95629888	0	2	203,7288	0,47186
chr14	95575414	95629886	ENST00000421193	0	+	95575414	95629886	0	2	203,7286	0,47186
chr14	95575429	95630317	REMC_MyoepithelialBreast.48489	0	+	95575429	95630317	0	2	188,7717	0,47171
chr14	95575430	95629901	HIT000097783	0	+	95575430	95629901	0	2	187,7301	0,47170
chr14	95575456	95629989	REMC_BreastStem.26100	0	+	95575456	95629989	0	2	161,7389	0,47144
chr14	95575457	95623390	H9_polyA-_Chen.7315	0	+	95575457	95623390	0	2	160,790	0,47143
chr14	95575469	95626480	HIT000004064	0	+	95575469	95626480	0	2	148,3880	0,47131
chr14	95575496	95623905	CD4_Plagnol_resting.31281	0	+	95575496	95623905	0	2	121,1305	0,47104
chr14	95575513	95623333	H1_rRNA-depleted_UCSD_REMC.45671	0	+	95575513	95623333	0	2	104,733	0,47087
chr14	95575649	95576425	H9_polyA-_Chen.7316	0	.	95575649	95576425	0	1	776	0
chr14	95581255	95581611	H1_rRNA-depleted_UCSD_REMC.45673	0	.	95581255	95581611	0	1	356	0
chr14	95603033	95631379	khalil_753	0	.	95603033	95631379	0	9	371,121,51,895,206,235,1263,41,51	0,13226,19649,22213,24726,24973,25691,27917,28295
chr14	95622463	95629793	prostate_carcinoma.50215	0	+	95622463	95629793	0	2	1191,3297	0,4033
chr14	95622463	95626367	prostate_carcinoma.50214	0	.	95622463	95626367	0	1	3904	0
chr14	95622505	95631553	BT474_Burge_Thompson.16643	0	.	95622505	95631553	0	1	9048	0
chr14	95622519	95623905	CD4_Plagnol_resting.31282	0	.	95622519	95623905	0	1	1386	0
chr14	95622531	95624966	A549_Myers.39466	0	.	95622531	95624966	0	1	2435	0
chr14	95622594	95626291	prostate_normal.29196	0	.	95622594	95626291	0	1	3697	0
chr14	95622596	95626385	ZR751_Thompson.12123	0	.	95622596	95626385	0	1	3789	0
chr14	95622597	95626311	B_Cells_Pritchard.1768973	0	.	95622597	95626311	0	1	3714	0
chr14	95622614	95626287	NEC_from_H9.38074	0	.	95622614	95626287	0	1	3673	0
chr14	95622619	95627819	REMC_LuminalBreast.51696	0	.	95622619	95627819	0	1	5200	0
chr14	95623458	95626492	HIT000015242	0	+	95623458	95626492	0	1	3034	0
chr14	95624138	95624661	CD4_Plagnol_resting.31279	0	.	95624138	95624661	0	1	523	0
chr14	95624338	95624779	liver_polyA+.69744	0	.	95624338	95624779	0	1	441	0
chr14	95624361	95625929	CD4_Plagnol_activated.32143	0	.	95624361	95625929	0	1	1568	0
chr14	95624592	95626519	HIT000009189	0	+	95624592	95626519	0	1	1927	0
chr14	95624886	95626243	MeWo_Garraway.18047	0	.	95624886	95626243	0	1	1357	0
chr14	95625018	95626288	A549_Myers.39465	0	.	95625018	95626288	0	1	1270	0
chr14	95625277	95626299	CD4_Plagnol_resting.31284	0	.	95625277	95626299	0	1	1022	0
chr14	95625449	95626465	HIT000282545	0	+	95625449	95626465	0	1	1016	0
chr14	95625648	95626123	adipose_Burge.19201	0	.	95625648	95626123	0	1	475	0
chr14	95625689	95626474	H1_rRNA-depleted_UCSD_REMC.45667	0	.	95625689	95626474	0	1	785	0
chr14	95625742	95626287	MeI_Garraway.8924	0	.	95625742	95626287	0	1	545	0
chr14	95625853	95626274	colon_Burge.18744	0	.	95625853	95626274	0	1	421	0
chr14	95626043	95629930	HIT000262512	0	+	95626043	95629930	0	1	3887	0
chr14	95626348	95627156	HIT000431883	0	+	95626348	95627156	0	1	808	0
chr14	95626484	95627815	CD4_Plagnol_resting.31283	0	.	95626484	95627815	0	1	1331	0
chr14	95626488	95629953	B_cells_Cheung.101653	0	.	95626488	95629953	0	1	3465	0
chr14	95626489	95629905	NEC_from_H9.38073	0	.	95626489	95629905	0	1	3416	0
chr14	95626492	95629804	ZR751_Thompson.12124	0	.	95626492	95629804	0	1	3312	0
chr14	95626492	95629977	MCF7_Burge_Thompson.14988	0	.	95626492	95629977	0	1	3485	0
chr14	95626497	95629925	prostate_normal.29197	0	.	95626497	95629925	0	1	3428	0
chr14	95626498	95629797	B_Cells_Pritchard.1768975	0	.	95626498	95629797	0	1	3299	0
chr14	95626500	95627487	MeWo_Garraway.18048	0	.	95626500	95627487	0	1	987	0
chr14	95626501	95626973	colon_Burge.18746	0	.	95626501	95626973	0	1	472	0
chr14	95626501	95627183	CD4_Plagnol_activated.32144	0	.	95626501	95627183	0	1	682	0
chr14	95626502	95630911	melanoma_Garraway_short_term_cultures.34032	0	.	95626502	95630911	0	1	4409	0
chr14	95626517	95629902	HIT000052760	0	+	95626517	95629902	0	1	3385	0
chr14	95626518	95629995	HIT000026372	0	+	95626518	95629995	0	1	3477	0
chr14	95626825	95629644	A549_Myers.39468	0	.	95626825	95629644	0	1	2819	0
chr14	95627300	95627730	CD4_Plagnol_activated.32145	0	.	95627300	95627730	0	1	430	0
chr14	95627322	95628790	colon_Burge.18748	0	.	95627322	95628790	0	1	1468	0
chr14	95627464	95629752	HIT000005295	0	-	95627464	95629752	0	1	2288	0
chr14	95627689	95629968	MeWo_Garraway.18049	0	.	95627689	95629968	0	1	2279	0
chr14	95627710	95629380	liver_polyA+.69749	0	.	95627710	95629380	0	1	1670	0
chr14	95627882	95629926	CD4_Plagnol_activated.32146	0	.	95627882	95629926	0	1	2044	0
chr14	95627888	95628576	CD4_Plagnol_resting.31285	0	.	95627888	95628576	0	1	688	0
chr14	95627891	95628997	REMC_LuminalBreast.51697	0	.	95627891	95628997	0	1	1106	0
chr14	95627959	95628469	testes_Burge.26168	0	.	95627959	95628469	0	1	510	0
chr14	95630034	95631320	MCF7_Burge_Thompson.14989	0	.	95630034	95631320	0	1	1286	0
chr14	95630593	95631219	H9_polyA+.22886	0	.	95630593	95631219	0	1	626	0
chr14	95634674	95635038	A549_Myers.39469	0	.	95634674	95635038	0	1	364	0
chr14	95634784	95635118	liver_polyA+.69752	0	.	95634784	95635118	0	1	334	0
chr14	95635426	95644305	pHIT000024464	0	-	95635426	95644305	0	3	141,148,41	0,6835,8838
chr14	95662117	95663895	B_Cells_Pritchard.1769063	0	.	95662117	95663895	0	1	1778	0
chr14	95722810	95723157	B_Cells_Pritchard.1769311	0	.	95722810	95723157	0	1	347	0
chr14	95730089	95730646	A549_Myers.39474	0	.	95730089	95730646	0	1	557	0
chr14	95782092	95784176	MIP101.34808	0	.	95782092	95784176	0	1	2084	0
chr14	95784232	95784841	MIP101.34810	0	.	95784232	95784841	0	1	609	0
chr14	95787805	95788869	BT474_Burge_Thompson.16648	0	.	95787805	95788869	0	1	1064	0
chr14	95788024	95788386	IMR90_UCSD_REMC.25649	0	-	95788024	95788386	0	1	362	0
chr14	95811067	95812813	HIT000029041	0	-	95811067	95812813	0	1	1746	0
chr14	95811982	95812858	REMC_BreastStem.26101	0	.	95811982	95812858	0	1	876	0
chr14	95812087	95812472	XR_078807	0	-	95812087	95812472	0	1	385	0
chr14	95815359	95815850	CD4_Plagnol_resting.31286	0	.	95815359	95815850	0	1	491	0
chr14	95815377	95815974	liver_polyA+.69758	0	.	95815377	95815974	0	1	597	0
chr14	96106967	96108350	H1_polyA+.58775	0	.	96106967	96108350	0	1	1383	0
chr14	96113836	96114570	B_Cells_Pritchard.1770299	0	.	96113836	96114570	0	1	734	0
chr14	96114121	96114588	B_cells_Cheung.101725	0	.	96114121	96114588	0	1	467	0
chr14	96126152	96136201	pHIT000087261	0	-	96126152	96136201	0	3	68,242,200	0,5036,9849
chr14	96126152	96136201	pHIT000024475	0	-	96126152	96136201	0	4	68,60,242,200	0,3437,5036,9849
chr14	96128441	96129135	A549_Myers.39532	0	.	96128441	96129135	0	1	694	0
chr14	96128643	96130184	B_Cells_Pritchard.1770357	0	.	96128643	96130184	0	1	1541	0
chr14	96128791	96132109	Rinn_00022617	0	+	96128791	96132109	0	4	114,130,211,1357	0,418,787,1961
chr14	96128857	96131830	HIT000016548	0	-	96128857	96131830	0	1	2973	0
chr14	96128866	96130213	B_cells_Cheung.101726	0	+	96128866	96130213	0	3	39,129,634	0,344,713
chr14	96153723	96154141	A549_Myers.39535	0	.	96153723	96154141	0	1	418	0
chr14	96156728	96157136	prostate_carcinoma.50240	0	.	96156728	96157136	0	1	408	0
chr14	96162461	96163930	prostate_carcinoma.50241	0	.	96162461	96163930	0	1	1469	0
chr14	96163741	96164262	B_cells_Cheung.101729	0	.	96163741	96164262	0	1	521	0
chr14	96164442	96164869	B_Cells_Pritchard.1770479	0	.	96164442	96164869	0	1	427	0
chr14	96185056	96185725	B_Cells_Pritchard.1770573	0	.	96185056	96185725	0	1	669	0
chr14	96217242	96217550	B_cells_Cheung.101730	0	.	96217242	96217550	0	1	308	0
chr14	96219646	96220740	B_cells_Cheung.101732	0	.	96219646	96220740	0	1	1094	0
chr14	96227862	96228357	B_cells_Cheung.101734	0	.	96227862	96228357	0	1	495	0
chr14	96277434	96277832	A549_Myers.39547	0	.	96277434	96277832	0	1	398	0
chr14	96467756	96469111	T47D_Burge_Thompson.14427	0	.	96467756	96469111	0	1	1355	0
chr14	96467934	96469081	K562.22725	0	.	96467934	96469081	0	1	1147	0
chr14	96467937	96469239	B_cells_Cheung.101772	0	.	96467937	96469239	0	1	1302	0
chr14	96467952	96469045	prostate_carcinoma.50243	0	.	96467952	96469045	0	1	1093	0
chr14	96467980	96468458	BT474_Burge_Thompson.16651	0	.	96467980	96468458	0	1	478	0
chr14	96468001	96468987	melanoma_Garraway_short_term_cultures.34060	0	.	96468001	96468987	0	1	986	0
chr14	96468057	96469058	MCF7_Burge_Thompson.15005	0	.	96468057	96469058	0	1	1001	0
chr14	96468364	96469911	REMC_LuminalBreast.51730	0	.	96468364	96469911	0	1	1547	0
chr14	96469313	96473500	B_cells_Cheung.101773	0	.	96469313	96473500	0	1	4187	0
chr14	96469323	96474521	MIP101.34906	0	.	96469323	96474521	0	1	5198	0
chr14	96469610	96472461	H1_polyA+.58783	0	.	96469610	96472461	0	1	2851	0
chr14	96470636	96472547	prostate_carcinoma.50245	0	.	96470636	96472547	0	1	1911	0
chr14	96471724	96472461	melanoma_Garraway_short_term_cultures.34062	0	.	96471724	96472461	0	1	737	0
chr14	96474719	96477512	B_cells_Cheung.101775	0	.	96474719	96477512	0	1	2793	0
chr14	96474730	96477422	H1_polyA+.58785	0	.	96474730	96477422	0	1	2692	0
chr14	96474737	96477502	MIP101.34907	0	.	96474737	96477502	0	1	2765	0
chr14	96475157	96476861	K562.22727	0	.	96475157	96476861	0	1	1704	0
chr14	96476361	96477451	prostate_carcinoma.50246	0	.	96476361	96477451	0	1	1090	0
chr14	96476400	96477690	REMC_LuminalBreast.51732	0	.	96476400	96477690	0	1	1290	0
chr14	96481504	96482701	prostate_carcinoma.50248	0	.	96481504	96482701	0	1	1197	0
chr14	96481632	96482247	HeLa_polyA+_Chen.18152	0	.	96481632	96482247	0	1	615	0
chr14	96481683	96482396	K562.22730	0	.	96481683	96482396	0	1	713	0
chr14	96481799	96482429	MCF7_Burge_Thompson.15008	0	.	96481799	96482429	0	1	630	0
chr14	96485089	96489040	B_Cells_Pritchard.1771287	0	.	96485089	96489040	0	1	3951	0
chr14	96486644	96487975	B_cells_Cheung.101779	0	.	96486644	96487975	0	1	1331	0
chr14	96486881	96488852	H1_polyA+.58791	0	.	96486881	96488852	0	1	1971	0
chr14	96487050	96488882	MIP101.34911	0	.	96487050	96488882	0	1	1832	0
chr14	96489141	96491998	B_Cells_Pritchard.1771297	0	.	96489141	96491998	0	1	2857	0
chr14	96490708	96491282	HeLa_polyA+_Chen.18154	0	.	96490708	96491282	0	1	574	0
chr14	96490769	96491424	B_cells_Cheung.101782	0	.	96490769	96491424	0	1	655	0
chr14	96495503	96496023	HeLa_polyA+_Chen.18157	0	.	96495503	96496023	0	1	520	0
chr14	96496084	96496952	H1_polyA+.58797	0	.	96496084	96496952	0	1	868	0
chr14	96508566	96509132	B_Cells_Pritchard.1771325	0	.	96508566	96509132	0	1	566	0
chr14	96508728	96510514	MIP101.34923	0	.	96508728	96510514	0	1	1786	0
chr14	96509914	96510334	B_Cells_Pritchard.1771329	0	.	96509914	96510334	0	1	420	0
chr14	96509915	96510367	B_cells_Cheung.101795	0	.	96509915	96510367	0	1	452	0
chr14	96528953	96532691	HIT000045935	0	+	96528953	96532691	0	1	3738	0
chr14	96624692	96625776	MIP101.34928	0	.	96624692	96625776	0	1	1084	0
chr14	96752936	96754111	H1_polyA+.58804	0	.	96752936	96754111	0	1	1175	0
chr14	96813890	96814610	B_cells_Cheung.101799	0	.	96813890	96814610	0	1	720	0
chr14	96919308	96919938	B_Cells_Pritchard.1772471	0	.	96919308	96919938	0	1	630	0
chr14	96948755	96949849	B_Cells_Pritchard.1772595	0	.	96948755	96949849	0	1	1094	0
chr14	96981584	96982210	B_cells_Cheung.101818	0	.	96981584	96982210	0	1	626	0
chr14	96991662	97002686	B_cells_Cheung.101822	0	+	96991662	97002686	0	2	3355,101	0,10923
chr14	96991662	96996619	B_cells_Cheung.101823	0	.	96991662	96996619	0	1	4957	0
chr14	96991669	96996032	B_Cells_Pritchard.1772795	0	-	96991669	96996032	0	2	3519,781	0,3582
chr14	96994750	96996010	CD4_Plagnol_activated.32222	0	.	96994750	96996010	0	1	1260	0
chr14	96994884	96995659	CD4_Plagnol_resting.31338	0	.	96994884	96995659	0	1	775	0
chr14	97001739	97002686	prostate_carcinoma.50249	0	.	97001739	97002686	0	1	947	0
chr14	97001754	97002708	CD4_Plagnol_resting.31341	0	.	97001754	97002708	0	1	954	0
chr14	97074527	97081804	B_cells_Cheung.101844	0	-	97074527	97081804	0	4	1440,2298,150,160	0,1631,4380,7117
chr14	97075113	97081773	B_Cells_Pritchard.1773077	0	-	97075113	97081773	0	3	854,2298,129	0,1045,6531
chr14	97424333	97461395	pHIT000113727	0	-	97424333	97461395	0	4	127,113,127,164	0,30083,34910,36898
chr14	97461661	97514214	HIT000097775	0	-	97461661	97514214	0	3	1073,275,148	0,43701,52405
chr14	97461698	97514214	Rinn_00022340	0	-	97461698	97514214	0	3	1036,276,149	0,43663,52367
chr14	97461699	97514214	NR_015430	0	-	97461699	97514214	0	3	1035,275,148	0,43663,52367
chr14	97461727	97514214	ENST00000499006	0	-	97461727	97514214	0	3	1007,275,148	0,43635,52339
chr14	97469150	97514214	Rinn_00022383	0	-	97469150	97514214	0	3	1821,199,149	0,36211,44915
chr14	97469151	97514146	HIT000022797	0	+	97469151	97514146	0	3	1820,198,80	0,36211,44915
chr14	97469415	97471481	CD4_Plagnol_resting.31349	0	.	97469415	97471481	0	1	2066	0
chr14	97469418	97471506	CD4_Plagnol_activated.32258	0	.	97469418	97471506	0	1	2088	0
chr14	97478377	97514209	Rinn_00023166	0	-	97478377	97514209	0	3	54,274,144	0,26986,35688
chr14	97482529	97484180	CD4_Plagnol_resting.31354	0	.	97482529	97484180	0	1	1651	0
chr14	97482878	97486233	prostate_carcinoma.50253	0	.	97482878	97486233	0	1	3355	0
chr14	97483112	97483747	prostate_normal.29250	0	.	97483112	97483747	0	1	635	0
chr14	97483121	97483894	BT474_Burge_Thompson.16673	0	.	97483121	97483894	0	1	773	0
chr14	97483172	97483789	CD4_Snyder.40142	0	.	97483172	97483789	0	1	617	0
chr14	97483191	97484339	CD4_Plagnol_activated.32260	0	.	97483191	97484339	0	1	1148	0
chr14	97483194	97483502	lymph_node_Burge.24210	0	.	97483194	97483502	0	1	308	0
chr14	97489890	97491812	CD4_Plagnol_resting.31358	0	.	97489890	97491812	0	1	1922	0
chr14	97490046	97514200	BT474_Burge_Thompson.16671	0	-	97490046	97514200	0	4	5864,155,275,134	0,6306,15316,24020
chr14	97490051	97496684	CD4_Plagnol_activated.32263	0	.	97490051	97496684	0	1	6633	0
chr14	97491928	97494953	CD4_Plagnol_resting.31359	0	.	97491928	97494953	0	1	3025	0
chr14	97491937	97492781	prostate_carcinoma.50255	0	.	97491937	97492781	0	1	844	0
chr14	97492094	97493243	CD4_Snyder.40148	0	.	97492094	97493243	0	1	1149	0
chr14	97494018	97514214	Rinn_00022385	0	-	97494018	97514214	0	3	1892,276,149	0,11343,20047
chr14	97494019	97514200	ENST00000502187	0	-	97494019	97514200	0	4	1891,155,275,134	0,2333,11343,20047
chr14	97494019	97514200	HIT000016535	0	-	97494019	97514200	0	4	1891,155,275,134	0,2333,11343,20047
chr14	97494124	97514198	HIT000056211	0	-	97494124	97514198	0	3	1786,275,132	0,11238,19942
chr14	97494149	97514198	ENST00000512901	0	-	97494149	97514198	0	3	1761,275,132	0,11213,19917
chr14	97494532	97514192	Rinn_00022862	0	-	97494532	97514192	0	4	1378,156,199,127	0,1819,10829,19533
chr14	97495607	97514324	Rinn_00022863	0	-	97495607	97514324	0	3	303,199,259	0,9754,18458
chr14	97496174	97514210	Rinn_00022866	0	-	97496174	97514210	0	3	333,276,145	0,9187,17891
chr14	97496200	97514227	CD4_Snyder.40152	0	-	97496200	97514227	0	3	307,271,161	0,9162,17866
chr14	97496479	97514182	Rinn_00023168	0	-	97496479	97514182	0	3	28,199,117	0,8882,17586
chr14	97497702	97501046	prostate_carcinoma.50256	0	.	97497702	97501046	0	1	3344	0
chr14	97498781	97503588	CD4_Plagnol_resting.31362	0	.	97498781	97503588	0	1	4807	0
chr14	97498998	97514209	Rinn_00023169	0	-	97498998	97514209	0	3	85,276,144	0,6363,15067
chr14	97499499	97500425	prostate_normal.29254	0	.	97499499	97500425	0	1	926	0
chr14	97499510	97500303	BT474_Burge_Thompson.16677	0	.	97499510	97500303	0	1	793	0
chr14	97505348	97514216	prostate_carcinoma.50259	0	-	97505348	97514216	0	2	289,150	0,8718
chr14	97505355	97514332	CD4_Plagnol_activated.32267	0	-	97505355	97514332	0	2	282,266	0,8711
chr14	97671904	97672293	CD4_Plagnol_resting.31372	0	.	97671904	97672293	0	1	389	0
chr14	97671999	97672432	CD4_Plagnol_activated.32303	0	.	97671999	97672432	0	1	433	0
chr14	97698462	97699107	B_cells_Cheung.101847	0	.	97698462	97699107	0	1	645	0
chr14	97698503	97699334	CD4_Plagnol_activated.32305	0	.	97698503	97699334	0	1	831	0
chr14	97698541	97699335	CD4_Plagnol_resting.31376	0	.	97698541	97699335	0	1	794	0
chr14	97699972	97700612	CD4_Plagnol_resting.31371	0	.	97699972	97700612	0	1	640	0
chr14	97711089	97712278	CD4_Plagnol_resting.31382	0	.	97711089	97712278	0	1	1189	0
chr14	97711301	97711839	CD4_Plagnol_activated.32306	0	.	97711301	97711839	0	1	538	0
chr14	97918964	97944544	pHIT000113729	0	-	97918964	97944544	0	3	149,146,53	0,19666,25527
chr14	98086313	98111093	pHIT000113732	0	+	98086313	98111093	0	3	7,209,180	0,2512,24600
chr14	98118451	98171323	pHIT000113731	0	-	98118451	98171323	0	2	377,118	0,52754
chr14	98371240	98371670	A549_Myers.39554	0	.	98371240	98371670	0	1	430	0
chr14	98449748	98450694	BT474_Burge_Thompson.16667	0	.	98449748	98450694	0	1	946	0
chr14	98461226	98463895	HIT000342578	0	-	98461226	98463895	0	2	1595,256	0,2413
chr14	98566072	98572177	khalil_761	0	.	98566072	98572177	0	2	84,275	0,5830
chr14	98571809	98572218	A549_Myers.39563	0	.	98571809	98572218	0	1	409	0
chr14	98630127	98630545	A549_Myers.39565	0	.	98630127	98630545	0	1	418	0
chr14	98681774	98683906	CD4_Plagnol_resting.31386	0	.	98681774	98683906	0	1	2132	0
chr14	98684311	98685542	CD4_Plagnol_resting.31387	0	.	98684311	98685542	0	1	1231	0
chr14	98688770	98701583	CD4_Plagnol_resting.31391	0	+	98688770	98701583	0	2	112,3304	0,9509
chr14	98694577	98696063	CD4_Plagnol_resting.31393	0	.	98694577	98696063	0	1	1486	0
chr14	98695637	98696520	CD4_Plagnol_activated.32324	0	.	98695637	98696520	0	1	883	0
chr14	98696116	98696718	CD4_Plagnol_resting.31394	0	.	98696116	98696718	0	1	602	0
chr14	98698186	98701583	CD4_Plagnol_resting.31392	0	.	98698186	98701583	0	1	3397	0
chr14	98699213	98701269	CD4_Plagnol_activated.32327	0	.	98699213	98701269	0	1	2056	0
chr14	98699463	98699817	H1_rRNA-depleted_UCSD_REMC.45741	0	.	98699463	98699817	0	1	354	0
chr14	98809217	98810105	A549_Myers.39571	0	.	98809217	98810105	0	1	888	0
chr14	98810262	98810839	A549_Myers.39572	0	.	98810262	98810839	0	1	577	0
chr14	98820651	98821159	B_Cells_Pritchard.1776849	0	.	98820651	98821159	0	1	508	0
chr14	98820735	98821930	Rinn_00023170	0	-	98820735	98821930	0	2	879,36	0,1159
chr14	98820765	98821172	B_cells_Cheung.101881	0	.	98820765	98821172	0	1	407	0
chr14	98822988	98823845	B_Cells_Pritchard.1776855	0	.	98822988	98823845	0	1	857	0
chr14	98856115	98856597	A549_Myers.39577	0	.	98856115	98856597	0	1	482	0
chr14	98857075	98857604	A549_Myers.39579	0	.	98857075	98857604	0	1	529	0
chr14	98881979	98882555	B_Cells_Pritchard.1777033	0	.	98881979	98882555	0	1	576	0
chr14	98888834	98889300	B_cells_Cheung.101926	0	.	98888834	98889300	0	1	466	0
chr14	98888858	98889161	B_Cells_Pritchard.1777065	0	.	98888858	98889161	0	1	303	0
chr14	98892175	98893792	B_Cells_Pritchard.1777085	0	.	98892175	98893792	0	1	1617	0
chr14	98893272	98893855	B_cells_Cheung.101929	0	.	98893272	98893855	0	1	583	0
chr14	98919713	98920319	A549_Myers.39581	0	.	98919713	98920319	0	1	606	0
chr14	98930141	98930537	A549_Myers.39582	0	.	98930141	98930537	0	1	396	0
chr14	99142234	99142771	A549_Myers.39617	0	.	99142234	99142771	0	1	537	0
chr14	99142285	99143100	B_Cells_Pritchard.1777667	0	+	99142285	99143100	0	1	815	0
chr14	99142506	99143100	B_Cells_Pritchard.1777665	0	-	99142506	99143100	0	1	594	0
chr14	99143341	99146402	prostate_carcinoma.50297	0	.	99143341	99146402	0	1	3061	0
chr14	99143673	99145578	brain_AmbionMAQC.22112	0	.	99143673	99145578	0	1	1905	0
chr14	99147766	99148761	REMC_LuminalBreast.51822	0	.	99147766	99148761	0	1	995	0
chr14	99147793	99148137	prostate_carcinoma.50299	0	.	99147793	99148137	0	1	344	0
chr14	99147818	99149395	B_Cells_Pritchard.1777713	0	+	99147818	99149395	0	1	1577	0
chr14	99148430	99149395	B_Cells_Pritchard.1777715	0	-	99148430	99149395	0	2	173,725	0,240
chr14	99161945	99162588	brain_AmbionMAQC.22116	0	.	99161945	99162588	0	1	643	0
chr14	99162071	99164363	prostate_carcinoma.50303	0	.	99162071	99164363	0	1	2292	0
chr14	99163016	99164472	brain_AmbionMAQC.22117	0	.	99163016	99164472	0	1	1456	0
chr14	99164943	99165336	A549_Myers.39621	0	.	99164943	99165336	0	1	393	0
chr14	99164966	99165461	brain_AmbionMAQC.22118	0	.	99164966	99165461	0	1	495	0
chr14	99266106	99266662	A549_Myers.39633	0	.	99266106	99266662	0	1	556	0
chr14	99269167	99270044	prostate_carcinoma.50327	0	.	99269167	99270044	0	1	877	0
chr14	99271339	99271939	B_Cells_Pritchard.1778037	0	.	99271339	99271939	0	1	600	0
chr14	99273922	99293051	pHIT000024485	0	+	99273922	99293051	0	5	28,189,73,30,103	0,5749,12215,15735,19026
chr14	99276588	99289789	A549_Myers.39640	0	-	99276588	99289789	0	2	42,509	0,12692
chr14	99282498	99283083	A549_Myers.39639	0	.	99282498	99283083	0	1	585	0
chr14	99295628	99295942	A549_Myers.39648	0	.	99295628	99295942	0	1	314	0
chr14	99479011	99480591	kidney_Gilad.45149	0	-	99479011	99480591	0	2	39,837	0,743
chr14	99479011	99480709	liver_polyA+.69928	0	-	99479011	99480709	0	2	63,955	0,743
chr14	99479366	99480149	H1_polyA+.58883	0	.	99479366	99480149	0	1	783	0
chr14	99479652	99480844	B_Cells_Pritchard.1778673	0	.	99479652	99480844	0	1	1192	0
chr14	99479721	99480591	kidney_Gilad.45150	0	.	99479721	99480591	0	1	870	0
chr14	99486149	99487250	REMC_LuminalBreast.51856	0	.	99486149	99487250	0	1	1101	0
chr14	99487311	99488884	REMC_LuminalBreast.51857	0	.	99487311	99488884	0	1	1573	0
chr14	99487350	99487665	A549_Myers.39686	0	.	99487350	99487665	0	1	315	0
chr14	99504318	99504792	A549_Myers.39693	0	.	99504318	99504792	0	1	474	0
chr14	99695829	99697674	ZR751_Thompson.12149	0	+	99695829	99697674	0	2	392,277	0,1568
chr14	99696765	99697205	B_cells_Cheung.102008	0	.	99696765	99697205	0	1	440	0
chr14	99697283	99697651	B_cells_Cheung.102009	0	.	99697283	99697651	0	1	368	0
chr14	99698709	99704889	prostate_normal.29332	0	-	99698709	99704889	0	5	324,64,199,568,328	0,4544,4633,4911,5852
chr14	99699956	99700462	prostate_carcinoma.50383	0	.	99699956	99700462	0	1	506	0
chr14	99700787	99701962	B_cells_Cheung.102010	0	.	99700787	99701962	0	1	1175	0
chr14	99700794	99701999	prostate_carcinoma.50384	0	.	99700794	99701999	0	1	1205	0
chr14	99702187	99702921	prostate_carcinoma.50386	0	.	99702187	99702921	0	1	734	0
chr14	99702187	99711595	prostate_carcinoma.50385	0	+	99702187	99711595	0	2	437,1035	0,8373
chr14	99703189	99704211	B_cells_Cheung.102012	0	.	99703189	99704211	0	1	1022	0
chr14	99703199	99704877	prostate_carcinoma.50387	0	.	99703199	99704877	0	1	1678	0
chr14	99704239	99704708	prostate_normal.29331	0	.	99704239	99704708	0	1	469	0
chr14	99704281	99704853	B_cells_Cheung.102013	0	.	99704281	99704853	0	1	572	0
chr14	99706721	99708279	B_cells_Cheung.102016	0	.	99706721	99708279	0	1	1558	0
chr14	99706726	99708284	prostate_carcinoma.50388	0	.	99706726	99708284	0	1	1558	0
chr14	99706743	99708212	prostate_normal.29316	0	.	99706743	99708212	0	1	1469	0
chr14	99706835	99708039	MCF7_Burge_Thompson.15180	0	.	99706835	99708039	0	1	1204	0
chr14	99706846	99707498	H1_polyA+.58900	0	.	99706846	99707498	0	1	652	0
chr14	99706868	99708524	REMC_LuminalBreast.51897	0	.	99706868	99708524	0	1	1656	0
chr14	99707047	99708229	melanoma_Garraway_short_term_cultures.34087	0	.	99707047	99708229	0	1	1182	0
chr14	99708744	99712358	prostate_carcinoma.50391	0	+	99708744	99712358	0	2	79,752	0,2862
chr14	99710602	99712513	B_cells_Cheung.102019	0	.	99710602	99712513	0	1	1911	0
chr14	99711141	99711774	HepG2_Caltech_ENCODE.18463	0	.	99711141	99711774	0	1	633	0
chr14	99711516	99712152	MCF7_Burge_Thompson.15182	0	.	99711516	99712152	0	1	636	0
chr14	99722918	99723941	B_cells_Cheung.102024	0	.	99722918	99723941	0	1	1023	0
chr14	99722929	99740939	B_Cells_Pritchard.1786341	0	+	99722929	99740939	0	2	1130,887	0,17123
chr14	99724399	99725260	B_cells_Cheung.102025	0	.	99724399	99725260	0	1	861	0
chr14	99724468	99724778	A549_Myers.39729	0	.	99724468	99724778	0	1	310	0
chr14	99726206	99726550	B_cells_Cheung.102027	0	.	99726206	99726550	0	1	344	0
chr14	99728167	99729399	H1_polyA+.58902	0	.	99728167	99729399	0	1	1232	0
chr14	99728330	99729197	prostate_normal.29321	0	.	99728330	99729197	0	1	867	0
chr14	99728857	99729348	A549_Myers.39730	0	.	99728857	99729348	0	1	491	0
chr14	99730062	99743742	MCF7_Burge_Thompson.15076	0	-	99730062	99743742	0	2	291,516	0,13164
chr14	99730588	99731119	H1_polyA+.58903	0	.	99730588	99731119	0	1	531	0
chr14	99734127	99734558	H1_polyA+.58904	0	.	99734127	99734558	0	1	431	0
chr14	99735318	99736780	H1_polyA+.58906	0	.	99735318	99736780	0	1	1462	0
chr14	99739900	99740365	B_cells_Cheung.102032	0	.	99739900	99740365	0	1	465	0
chr14	99741010	99742078	HepG2_Caltech_ENCODE.18465	0	.	99741010	99742078	0	1	1068	0
chr14	99741559	99755655	B_Cells_Pritchard.1786405	0	+	99741559	99755655	0	3	860,1058,8	0,966,14088
chr14	99741718	99743887	REMC_LuminalBreast.51899	0	.	99741718	99743887	0	1	2169	0
chr14	99741812	99759223	B_Cells_Pritchard.1786407	0	-	99741812	99759223	0	3	252,346,497	0,1414,16914
chr14	99741915	99742756	REMC_MyoepithelialBreast.48557	0	.	99741915	99742756	0	1	841	0
chr14	99742445	99743753	B_cells_Cheung.102036	0	.	99742445	99743753	0	1	1308	0
chr14	99742856	99743855	REMC_MyoepithelialBreast.48558	0	.	99742856	99743855	0	1	999	0
chr14	99742882	99743807	HepG2_Caltech_ENCODE.18466	0	.	99742882	99743807	0	1	925	0
chr14	99743335	99743714	H9_polyA+.22955	0	.	99743335	99743714	0	1	379	0
chr14	99743337	99743738	K562.22752	0	.	99743337	99743738	0	1	401	0
chr14	99743391	99743745	T47D_Burge_Thompson.14466	0	.	99743391	99743745	0	1	354	0
chr14	99747481	99748066	MCF7_Burge_Thompson.15079	0	.	99747481	99748066	0	1	585	0
chr14	99749537	99750682	MIP101.35152	0	.	99749537	99750682	0	1	1145	0
chr14	99749540	99750686	B_cells_Cheung.102037	0	.	99749540	99750686	0	1	1146	0
chr14	99749544	99750659	H1_polyA+.59170	0	.	99749544	99750659	0	1	1115	0
chr14	99749564	99751498	prostate_carcinoma.50512	0	.	99749564	99751498	0	1	1934	0
chr14	99749602	99750648	B_Cells_Pritchard.1786415	0	-	99749602	99750648	0	2	181,157	0,889
chr14	99749811	99750671	REMC_LuminalBreast.51900	0	.	99749811	99750671	0	1	860	0
chr14	99749889	99750305	CD4_Snyder.40226	0	.	99749889	99750305	0	1	416	0
chr14	99749908	99750975	T47D_Burge_Thompson.14467	0	.	99749908	99750975	0	1	1067	0
chr14	99749913	99750706	prostate_normal.29325	0	.	99749913	99750706	0	1	793	0
chr14	99750033	99751557	A549_Myers.39733	0	.	99750033	99751557	0	1	1524	0
chr14	99750116	99750852	MCF7_Burge_Thompson.15080	0	.	99750116	99750852	0	1	736	0
chr14	99757394	99761007	H1_polyA+.59171	0	.	99757394	99761007	0	1	3613	0
chr14	99769147	99771677	H1_polyA+.59175	0	.	99769147	99771677	0	1	2530	0
chr14	99815465	99816982	HIT000271798	0	-	99815465	99816982	0	1	1517	0
chr14	99815957	99817067	kidney_Gilad.45222	0	.	99815957	99817067	0	1	1110	0
chr14	99816077	99816504	HeLa_Bartel_miR-155_12hr.16906	0	.	99816077	99816504	0	1	427	0
chr14	99816137	99816482	HeLa_Bartel_miR-155_32hr.9312	0	.	99816137	99816482	0	1	345	0
chr14	99816550	99818873	colon_Burge.18854	0	.	99816550	99818873	0	1	2323	0
chr14	99816781	99821655	testes_Burge.26297	0	-	99816781	99821655	0	2	304,59	0,4815
chr14	99817149	99818871	CD4_Snyder.40231	0	.	99817149	99818871	0	1	1722	0
chr14	99817156	99818875	testes_Burge.26299	0	.	99817156	99818875	0	1	1719	0
chr14	99817157	99818854	A549_Myers.39990	0	.	99817157	99818854	0	1	1697	0
chr14	99817157	99818929	prostate_normal.29506	0	.	99817157	99818929	0	1	1772	0
chr14	99817158	99818873	kidney_Gilad.45227	0	.	99817158	99818873	0	1	1715	0
chr14	99817160	99818875	lymph_node_Burge.24291	0	.	99817160	99818875	0	1	1715	0
chr14	99817160	99818844	breast_Burge.19863	0	.	99817160	99818844	0	1	1684	0
chr14	99817165	99818859	NEC_from_H9.38229	0	.	99817165	99818859	0	1	1694	0
chr14	99817211	99818148	HeLa_Bartel_miR-1_12hr.16317	0	.	99817211	99818148	0	1	937	0
chr14	99817235	99818837	HeLa_polyA-_Chen.9753	0	.	99817235	99818837	0	1	1602	0
chr14	99817488	99818260	heart_Burge.14795	0	.	99817488	99818260	0	1	772	0
chr14	99817525	99818844	adipose_Burge.19279	0	.	99817525	99818844	0	1	1319	0
chr14	99817536	99818827	HME_Burge.20091	0	.	99817536	99818827	0	1	1291	0
chr14	99817867	99818299	H1_rRNA-depleted_UCSD_REMC.45835	0	.	99817867	99818299	0	1	432	0
chr14	99819767	99820885	melanoma_Garraway_short_term_cultures.34095	0	.	99819767	99820885	0	1	1118	0
chr14	99821729	99823620	REMC_LuminalBreast.51923	0	.	99821729	99823620	0	1	1891	0
chr14	99821795	99823636	REMC_MyoepithelialBreast.48576	0	.	99821795	99823636	0	1	1841	0
chr14	99822565	99823726	CD4_Plagnol_activated.32406	0	.	99822565	99823726	0	1	1161	0
chr14	99822625	99823551	H1_polyA+.59199	0	.	99822625	99823551	0	1	926	0
chr14	99822850	99824157	melanoma_Garraway_short_term_cultures.34096	0	.	99822850	99824157	0	1	1307	0
chr14	99822900	99823724	MeWo_Garraway.18092	0	.	99822900	99823724	0	1	824	0
chr14	99823648	99824380	CD4_Plagnol_resting.31635	0	.	99823648	99824380	0	1	732	0
chr14	99823778	99824196	CD4_Plagnol_activated.32407	0	.	99823778	99824196	0	1	418	0
chr14	99844701	99846474	B_cells_Cheung.102068	0	.	99844701	99846474	0	1	1773	0
chr14	99848534	99849937	REMC_LuminalBreast.51925	0	.	99848534	99849937	0	1	1403	0
chr14	99848703	99849675	REMC_BreastStem.26162	0	.	99848703	99849675	0	1	972	0
chr14	99849777	99850637	REMC_MyoepithelialBreast.48579	0	.	99849777	99850637	0	1	860	0
chr14	99849986	99850343	A549_Myers.39744	0	.	99849986	99850343	0	1	357	0
chr14	99849994	99850640	REMC_BreastStem.26163	0	.	99849994	99850640	0	1	646	0
chr14	99850050	99850593	B_Cells_Pritchard.1779351	0	.	99850050	99850593	0	1	543	0
chr14	99850071	99851094	REMC_LuminalBreast.51926	0	.	99850071	99851094	0	1	1023	0
chr14	99850749	99851748	REMC_MyoepithelialBreast.48580	0	.	99850749	99851748	0	1	999	0
chr14	99850816	99851743	REMC_BreastStem.26164	0	.	99850816	99851743	0	1	927	0
chr14	99855987	99856915	REMC_BreastStem.26167	0	.	99855987	99856915	0	1	928	0
chr14	99866513	99867664	B_Cells_Pritchard.1779417	0	-	99866513	99867664	0	1	1151	0
chr14	99868198	99868546	liver_polyA+.70672	0	.	99868198	99868546	0	1	348	0
chr14	100067542	100067980	B_Cells_Pritchard.1779841	0	.	100067542	100067980	0	1	438	0
chr14	100067951	100068929	MCF7_Burge_Thompson.15100	0	.	100067951	100068929	0	1	978	0
chr14	100123947	100124449	A549_Myers.39795	0	.	100123947	100124449	0	1	502	0
chr14	100126794	100127185	A549_Myers.39797	0	.	100126794	100127185	0	1	391	0
chr14	100165891	100166233	A549_Myers.39801	0	.	100165891	100166233	0	1	342	0
chr14	100190703	100191289	A549_Myers.39803	0	.	100190703	100191289	0	1	586	0
chr14	100191863	100192377	A549_Myers.39804	0	.	100191863	100192377	0	1	514	0
chr14	100217150	100217562	A549_Myers.39808	0	.	100217150	100217562	0	1	412	0
chr14	100224642	100226371	Rinn_00022630	0	+	100224642	100226371	0	2	864,81	0,1648
chr14	100226957	100227750	HeLa_polyA+_Chen.18214	0	.	100226957	100227750	0	1	793	0
chr14	100227537	100228771	REMC_MyoepithelialBreast.48646	0	.	100227537	100228771	0	1	1234	0
chr14	100228630	100229402	A549_Myers.39811	0	.	100228630	100229402	0	1	772	0
chr14	100228658	100229369	HeLa_polyA+_Chen.18215	0	.	100228658	100229369	0	1	711	0
chr14	100234141	100234444	A549_Myers.39814	0	.	100234141	100234444	0	1	303	0
chr14	100247871	100248580	A549_Myers.39818	0	.	100247871	100248580	0	1	709	0
chr14	100274811	100275202	A549_Myers.39822	0	.	100274811	100275202	0	1	391	0
chr14	100309455	100309770	A549_Myers.39823	0	.	100309455	100309770	0	1	315	0
chr14	100313877	100314490	K562.22766	0	.	100313877	100314490	0	1	613	0
chr14	100325024	100326615	MIP101.35038	0	.	100325024	100326615	0	1	1591	0
chr14	100340253	100341589	MIP101.35042	0	.	100340253	100341589	0	1	1336	0
chr14	100355464	100357014	HepG2_Caltech_ENCODE.18489	0	.	100355464	100357014	0	1	1550	0
chr14	100355914	100356568	A549_Myers.39824	0	.	100355914	100356568	0	1	654	0
chr14	100360192	100360595	A549_Myers.39825	0	.	100360192	100360595	0	1	403	0
chr14	100360741	100361489	HIT000332716	0	-	100360741	100361489	0	1	748	0
chr14	100387791	100388477	prostate_normal.29428	0	.	100387791	100388477	0	1	686	0
chr14	100387835	100388458	ovary_Raymond.139966	0	.	100387835	100388458	0	1	623	0
chr14	100389608	100392104	melanoma_Garraway_short_term_cultures.34121	0	.	100389608	100392104	0	1	2496	0
chr14	100390750	100393713	HIT000043751	0	-	100390750	100393713	0	1	2963	0
chr14	100391456	100392584	HIT000273012	0	-	100391456	100392584	0	1	1128	0
chr14	100392285	100392826	IMR90_UCSD_REMC.25796	0	-	100392285	100392826	0	1	541	0
chr14	100396207	100396734	ovary_Raymond.139979	0	.	100396207	100396734	0	1	527	0
chr14	100402270	100403953	REMC_MyoepithelialBreast.48651	0	.	100402270	100403953	0	1	1683	0
chr14	100402748	100404010	REMC_BreastStem.26365	0	.	100402748	100404010	0	1	1262	0
chr14	100407322	100410267	REMC_MyoepithelialBreast.48652	0	.	100407322	100410267	0	1	2945	0
chr14	100407338	100409437	REMC_BreastStem.26367	0	.	100407338	100409437	0	1	2099	0
chr14	100407874	100408207	ovary_Raymond.139988	0	.	100407874	100408207	0	1	333	0
chr14	100408000	100409678	prostate_carcinoma.50421	0	.	100408000	100409678	0	1	1678	0
chr14	100410043	100410581	prostate_carcinoma.50422	0	.	100410043	100410581	0	1	538	0
chr14	100412519	100414917	REMC_BreastStem.26370	0	.	100412519	100414917	0	1	2398	0
chr14	100412757	100415395	REMC_MyoepithelialBreast.48655	0	.	100412757	100415395	0	1	2638	0
chr14	100414318	100414886	IMR90_UCSD_REMC.25759	0	-	100414318	100414886	0	1	568	0
chr14	100414992	100415640	REMC_BreastStem.26205	0	.	100414992	100415640	0	1	648	0
chr14	100428022	100428867	prostate_carcinoma.50424	0	.	100428022	100428867	0	1	845	0
chr14	100429017	100430439	HIT000079406	0	+	100429017	100430439	0	1	1422	0
chr14	100433490	100433892	MIP101.35048	0	.	100433490	100433892	0	1	402	0
chr14	100439829	100441724	brain_AmbionMAQC.22142	0	.	100439829	100441724	0	1	1895	0
chr14	100444332	100446218	REMC_BreastStem.26210	0	.	100444332	100446218	0	1	1886	0
chr14	100445242	100446103	prostate_carcinoma.50429	0	.	100445242	100446103	0	1	861	0
chr14	100445441	100446636	brain_AmbionMAQC.22144	0	.	100445441	100446636	0	1	1195	0
chr14	100455485	100459098	REMC_MyoepithelialBreast.48664	0	.	100455485	100459098	0	1	3613	0
chr14	100467328	100467908	REMC_MyoepithelialBreast.48668	0	.	100467328	100467908	0	1	580	0
chr14	100536030	100542882	REMC_BreastStem.26233	0	.	100536030	100542882	0	1	6852	0
chr14	100536283	100538622	REMC_MyoepithelialBreast.48679	0	.	100536283	100538622	0	1	2339	0
chr14	100540615	100542932	REMC_MyoepithelialBreast.48678	0	.	100540615	100542932	0	1	2317	0
chr14	100541397	100543122	HIT000043038	0	+	100541397	100543122	0	1	1725	0
chr14	100541508	100542660	HIT000390860	0	+	100541508	100542660	0	1	1152	0
chr14	100541974	100542519	A549_Myers.39837	0	.	100541974	100542519	0	1	545	0
chr14	100543039	100546844	REMC_BreastStem.26234	0	.	100543039	100546844	0	1	3805	0
chr14	100546422	100547615	REMC_MyoepithelialBreast.48682	0	.	100546422	100547615	0	1	1193	0
chr14	100553558	100554690	REMC_MyoepithelialBreast.48685	0	.	100553558	100554690	0	1	1132	0
chr14	100553823	100554752	REMC_BreastStem.26236	0	.	100553823	100554752	0	1	929	0
chr14	100554873	100556834	REMC_BreastStem.26237	0	.	100554873	100556834	0	1	1961	0
chr14	100554964	100556699	REMC_MyoepithelialBreast.48686	0	.	100554964	100556699	0	1	1735	0
chr14	100556033	100556370	ovary_Raymond.139834	0	.	100556033	100556370	0	1	337	0
chr14	100571845	100572629	REMC_BreastStem.26240	0	.	100571845	100572629	0	1	784	0
chr14	100599600	100600540	prostate_carcinoma.50434	0	.	100599600	100600540	0	1	940	0
chr14	100602117	100602596	A549_Myers.39841	0	.	100602117	100602596	0	1	479	0
chr14	100603099	100604188	REMC_BreastStem.26243	0	.	100603099	100604188	0	1	1089	0
chr14	100603862	100604183	A549_Myers.39843	0	.	100603862	100604183	0	1	321	0
chr14	100604028	100605004	prostate_normal.29364	0	.	100604028	100605004	0	1	976	0
chr14	100604333	100609998	brain_AmbionMAQC.22162	0	.	100604333	100609998	0	1	5665	0
chr14	100604333	100609998	brain_AmbionMAQC.22164	0	-	100604333	100609998	0	2	4657,523	0,5142
chr14	100604427	100605336	A549_Myers.39844	0	.	100604427	100605336	0	1	909	0
chr14	100605254	100609012	prostate_normal.29365	0	.	100605254	100609012	0	1	3758	0
chr14	100605999	100609024	HIT000019417	0	-	100605999	100609024	0	2	146,2493	0,532
chr14	100606575	100609014	Rinn_00022413	0	-	100606575	100609014	0	2	254,2143	0,296
chr14	100606576	100609014	ENST00000514741	0	-	100606576	100609014	0	2	253,2142	0,296
chr14	100606576	100609024	HIT000004801	0	-	100606576	100609024	0	2	255,2148	0,300
chr14	100607747	100609741	Rinn_00022876	0	-	100607747	100609741	0	2	1243,267	0,1727
chr14	100607871	100613742	H1_polyA+.59018	0	-	100607871	100613742	0	4	1119,529,173,81	0,2251,4752,5790
chr14	100607871	100609161	H1_polyA+.59016	0	.	100607871	100609161	0	1	1290	0
chr14	100608075	100608493	H9_polyA+.22984	0	.	100608075	100608493	0	1	418	0
chr14	100608168	100608555	testes_Burge.26334	0	.	100608168	100608555	0	1	387	0
chr14	100609080	100609848	A549_Myers.39851	0	.	100609080	100609848	0	1	768	0
chr14	100609161	100611426	H1_polyA+.59017	0	.	100609161	100611426	0	1	2265	0
chr14	100610052	100613761	Rinn_00022414	0	-	100610052	100613761	0	4	167,82,174,101	0,517,2570,3608
chr14	100610116	100610673	HIT000435638	0	+	100610116	100610673	0	1	557	0
chr14	100610136	100611134	brain_AmbionMAQC.22161	0	.	100610136	100611134	0	1	998	0
chr14	100611199	100611533	A549_Myers.39853	0	.	100611199	100611533	0	1	334	0
chr14	100639618	100640049	A549_Myers.39856	0	.	100639618	100640049	0	1	431	0
chr14	100655071	100665386	khalil_768	0	.	100655071	100665386	0	4	611,163,351,66	0,3372,7928,10249
chr14	100656613	100657594	B_Cells_Pritchard.1781567	0	.	100656613	100657594	0	1	981	0
chr14	100660291	100661322	B_Cells_Pritchard.1781579	0	.	100660291	100661322	0	1	1031	0
chr14	100687363	100688052	A549_Myers.39859	0	.	100687363	100688052	0	1	689	0
chr14	100687454	100687862	BT474_Burge_Thompson.16717	0	.	100687454	100687862	0	1	408	0
chr14	100710279	100710754	A549_Myers.39860	0	.	100710279	100710754	0	1	475	0
chr14	100715587	100716222	A549_Myers.39862	0	.	100715587	100716222	0	1	635	0
chr14	100730173	100730631	A549_Myers.39864	0	.	100730173	100730631	0	1	458	0
chr14	100771005	100772009	A549_Myers.39874	0	.	100771005	100772009	0	1	1004	0
chr14	100862842	100870974	HepG2_Caltech_ENCODE.18491	0	.	100862842	100870974	0	1	8132	0
chr14	100862842	100871583	HepG2_Caltech_ENCODE.18492	0	-	100862842	100871583	0	4	4348,1673,651,289	0,4438,7480,8452
chr14	100864340	100866207	MIP101.35051	0	.	100864340	100866207	0	1	1867	0
chr14	100864358	100867360	prostate_carcinoma.50440	0	.	100864358	100867360	0	1	3002	0
chr14	100866313	100869196	MIP101.35052	0	.	100866313	100869196	0	1	2883	0
chr14	100866387	100867159	liver_polyA+.70063	0	.	100866387	100867159	0	1	772	0
chr14	100867286	100868994	liver_polyA+.70064	0	.	100867286	100868994	0	1	1708	0
chr14	100867286	100871131	liver_polyA+.70065	0	-	100867286	100871131	0	2	1667,809	0,3036
chr14	100867493	100868953	prostate_carcinoma.50441	0	.	100867493	100868953	0	1	1460	0
chr14	100868053	100870589	Rinn_00022878	0	-	100868053	100870589	0	2	900,268	0,2268
chr14	100869231	100869588	A549_Myers.39877	0	.	100869231	100869588	0	1	357	0
chr14	100879346	100881431	MIP101.35059	0	.	100879346	100881431	0	1	2085	0
chr14	100884044	100885002	MIP101.35061	0	.	100884044	100885002	0	1	958	0
chr14	100885570	100888493	MIP101.35055	0	.	100885570	100888493	0	1	2923	0
chr14	100886000	100887610	prostate_carcinoma.50444	0	.	100886000	100887610	0	1	1610	0
chr14	100886204	100887543	prostate_normal.29368	0	.	100886204	100887543	0	1	1339	0
chr14	100888545	100889187	MIP101.35062	0	.	100888545	100889187	0	1	642	0
chr14	100889238	100892759	MIP101.35058	0	-	100889238	100892759	0	3	2027,78,550	0,2492,2971
chr14	100889445	100892265	Rinn_00022880	0	-	100889445	100892265	0	3	1820,79,57	0,2284,2763
chr14	100890288	100891831	prostate_carcinoma.50447	0	-	100890288	100891831	0	2	977,101	0,1442
chr14	100894188	100911965	MIP101.35057	0	-	100894188	100911965	0	2	2148,77	0,17700
chr14	100894250	100896108	prostate_carcinoma.50450	0	.	100894250	100896108	0	1	1858	0
chr14	100896334	100899618	MIP101.35056	0	.	100896334	100899618	0	1	3284	0
chr14	100896386	100899663	prostate_carcinoma.50451	0	.	100896386	100899663	0	1	3277	0
chr14	100897357	100899588	prostate_normal.29374	0	.	100897357	100899588	0	1	2231	0
chr14	100900292	100901118	MIP101.35065	0	.	100900292	100901118	0	1	826	0
chr14	100901087	100907364	khalil_769	0	.	100901087	100907364	0	5	247,234,441,321,329	0,692,2521,5066,5948
chr14	100901159	100901560	A549_Myers.39882	0	.	100901159	100901560	0	1	401	0
chr14	100902702	100903867	MIP101.35066	0	.	100902702	100903867	0	1	1165	0
chr14	100903942	100905591	MIP101.35067	0	.	100903942	100905591	0	1	1649	0
chr14	100906861	100908162	MIP101.35069	0	.	100906861	100908162	0	1	1301	0
chr14	100927528	100929460	MIP101.35075	0	.	100927528	100929460	0	1	1932	0
chr14	100931577	100932776	MIP101.35080	0	.	100931577	100932776	0	1	1199	0
chr14	100934134	100937584	MIP101.35081	0	.	100934134	100937584	0	1	3450	0
chr14	100938553	100940773	MIP101.35083	0	.	100938553	100940773	0	1	2220	0
chr14	100941920	100949387	MIP101.35076	0	.	100941920	100949387	0	1	7467	0
chr14	100942106	100944165	Rinn_00022881	0	-	100942106	100944165	0	2	208,334	0,1725
chr14	100949487	100978820	MIP101.35079	0	-	100949487	100978820	0	3	5928,109,276	0,23428,29057
chr14	100971572	100972750	MIP101.35091	0	.	100971572	100972750	0	1	1178	0
chr14	100993843	100994280	A549_Myers.39886	0	.	100993843	100994280	0	1	437	0
chr14	100994761	100995159	A549_Myers.39887	0	.	100994761	100995159	0	1	398	0
chr14	100995016	100995524	prostate_carcinoma.50453	0	.	100995016	100995524	0	1	508	0
chr14	100996994	100997766	melanoma_Garraway_short_term_cultures.34129	0	.	100996994	100997766	0	1	772	0
chr14	100997245	101013796	A549_Myers.39889	0	+	100997245	101013796	0	3	36,403,5226	0,7345,11325
chr14	101000091	101004076	MIP101.35092	0	.	101000091	101004076	0	1	3985	0
chr14	101000097	101004031	melanoma_Garraway_short_term_cultures.34130	0	.	101000097	101004031	0	1	3934	0
chr14	101000230	101003524	prostate_carcinoma.50454	0	.	101000230	101003524	0	1	3294	0
chr14	101002318	101013559	A549_Myers.39893	0	-	101002318	101013559	0	4	1104,2087,664,4537	0,1870,4306,6704
chr14	101002318	101004077	A549_Myers.39891	0	.	101002318	101004077	0	1	1759	0
chr14	101002805	101005867	REMC_LuminalBreast.51953	0	.	101002805	101005867	0	1	3062	0
chr14	101004134	101005917	melanoma_Garraway_short_term_cultures.34131	0	.	101004134	101005917	0	1	1783	0
chr14	101004334	101013196	MIP101.35093	0	+	101004334	101013196	0	2	10,5645	0,3217
chr14	101005693	101006338	MIP101.35095	0	.	101005693	101006338	0	1	645	0
chr14	101007417	101011729	REMC_LuminalBreast.51955	0	.	101007417	101011729	0	1	4312	0
chr14	101007463	101013184	melanoma_Garraway_short_term_cultures.34133	0	.	101007463	101013184	0	1	5721	0
chr14	101007555	101009660	A549_Myers.39892	0	.	101007555	101009660	0	1	2105	0
chr14	101007583	101011625	prostate_carcinoma.50457	0	.	101007583	101011625	0	1	4042	0
chr14	101008397	101010209	BT20_Thompson.10807	0	.	101008397	101010209	0	1	1812	0
chr14	101010435	101011494	BT20_Thompson.10808	0	.	101010435	101011494	0	1	1059	0
chr14	101010899	101011645	prostate_normal.29379	0	.	101010899	101011645	0	1	746	0
chr14	101011642	101013267	BT20_Thompson.10809	0	.	101011642	101013267	0	1	1625	0
chr14	101014757	101015527	A549_Myers.39894	0	.	101014757	101015527	0	1	770	0
chr14	101027035	101027412	A549_Myers.39896	0	.	101027035	101027412	0	1	377	0
chr14	101028885	101057492	pHIT000024517	0	+	101028885	101057492	0	3	139,171,110	0,3767,28497
chr14	101042263	101042594	A549_Myers.39898	0	.	101042263	101042594	0	1	331	0
chr14	101055053	101055405	A549_Myers.39900	0	.	101055053	101055405	0	1	352	0
chr14	101055537	101059393	Rinn_00022883	0	-	101055537	101059393	0	2	3362,86	0,3770
chr14	101061499	101061810	A549_Myers.39902	0	.	101061499	101061810	0	1	311	0
chr14	101071577	101072912	MIP101.35097	0	.	101071577	101072912	0	1	1335	0
chr14	101073085	101073405	A549_Myers.39904	0	.	101073085	101073405	0	1	320	0
chr14	101080424	101088832	liver_polyA+.70068	0	-	101080424	101088832	0	2	73,528	0,7880
chr14	101085017	101085652	A549_Myers.39906	0	.	101085017	101085652	0	1	635	0
chr14	101088312	101091766	ENST00000506681	0	-	101088312	101091766	0	2	2020,453	0,3001
chr14	101088312	101091766	HIT000080389	0	+	101088312	101091766	0	2	2020,453	0,3001
chr14	101088312	101091766	HIT000080391	0	-	101088312	101091766	0	2	532,453	0,3001
chr14	101088312	101091766	NR_002770	0	-	101088312	101091766	0	1	3454	0
chr14	101088331	101091908	prostate_carcinoma.50458	0	-	101088331	101091908	0	2	513,1784	0,1793
chr14	101088331	101091908	prostate_carcinoma.50459	0	.	101088331	101091908	0	1	3577	0
chr14	101091162	101091549	A549_Myers.39910	0	.	101091162	101091549	0	1	387	0
chr14	101093984	101094284	colon_Burge.18860	0	.	101093984	101094284	0	1	300	0
chr14	101094039	101094366	testes_Burge.26345	0	.	101094039	101094366	0	1	327	0
chr14	101094365	101095361	MCF7_Burge_Thompson.15107	0	.	101094365	101095361	0	1	996	0
chr14	101094925	101095304	adipose_Burge.19302	0	.	101094925	101095304	0	1	379	0
chr14	101095465	101095860	adipose_Burge.19303	0	.	101095465	101095860	0	1	395	0
chr14	101095619	101096063	A549_Myers.39918	0	.	101095619	101096063	0	1	444	0
chr14	101095755	101096323	testes_Burge.26343	0	.	101095755	101096323	0	1	568	0
chr14	101099657	101108817	pHIT000024522	0	-	101099657	101108817	0	3	144,74,796	0,3773,8364
chr14	101099657	101108817	pHIT000113780	0	-	101099657	101108817	0	2	17,796	0,8364
chr14	101100907	101101287	A549_Myers.39916	0	.	101100907	101101287	0	1	380	0
chr14	101107953	101108817	pHIT000087779	0	-	101107953	101108817	0	1	864	0
chr14	101119158	101119710	B_Cells_Pritchard.1782737	0	.	101119158	101119710	0	1	552	0
chr14	101119527	101119889	A549_Myers.39923	0	.	101119527	101119889	0	1	362	0
chr14	101120492	101120840	A549_Myers.39924	0	.	101120492	101120840	0	1	348	0
chr14	101120545	101170769	pHIT000087780	0	-	101120545	101170769	0	3	187,74,237	0,2889,49987
chr14	101123434	101170769	pHIT000087452	0	-	101123434	101170769	0	2	74,237	0,47098
chr14	101124397	101124756	A549_Myers.39926	0	.	101124397	101124756	0	1	359	0
chr14	101143551	101144376	BT474_Burge_Thompson.16731	0	.	101143551	101144376	0	1	825	0
chr14	101156193	101156572	B_Cells_Pritchard.1782817	0	.	101156193	101156572	0	1	379	0
chr14	101164481	101171986	HepG2_Caltech_ENCODE.18493	0	-	101164481	101171986	0	4	4724,1980,173,265	0,4765,6924,7240
chr14	101164486	101166391	CD4_Plagnol_activated.32422	0	.	101164486	101166391	0	1	1905	0
chr14	101164871	101165422	brain_AmbionMAQC.22168	0	.	101164871	101165422	0	1	551	0
chr14	101165418	101166676	K562.22770	0	.	101165418	101166676	0	1	1258	0
chr14	101165580	101167069	MIP101.35101	0	.	101165580	101167069	0	1	1489	0
chr14	101166265	101166960	CD4_Plagnol_resting.31558	0	.	101166265	101166960	0	1	695	0
chr14	101166471	101167903	CD4_Plagnol_activated.32423	0	.	101166471	101167903	0	1	1432	0
chr14	101168509	101169867	CD4_Plagnol_activated.32424	0	.	101168509	101169867	0	1	1358	0
chr14	101170756	101171959	B_Cells_Pritchard.1782877	0	.	101170756	101171959	0	1	1203	0
chr14	101171437	101171875	CD4_Plagnol_activated.32426	0	.	101171437	101171875	0	1	438	0
chr14	101244897	101246343	K562.22772	0	.	101244897	101246343	0	1	1446	0
chr14	101247400	101247773	A549_Myers.39933	0	.	101247400	101247773	0	1	373	0
chr14	101258409	101258912	CD4_Snyder.40274	0	.	101258409	101258912	0	1	503	0
chr14	101258423	101258875	CD4_Plagnol_activated.32429	0	.	101258423	101258875	0	1	452	0
chr14	101266526	101268615	NR_026774	0	+	101266526	101268615	0	4	51,112,189,290	0,920,1351,1799
chr14	101266732	101268949	B_cells_Cheung.102121	0	+	101266732	101268949	0	3	826,283,624	0,1051,1593
chr14	101267146	101268938	MIP101.35103	0	.	101267146	101268938	0	1	1792	0
chr14	101267356	101267757	A549_Myers.39944	0	.	101267356	101267757	0	1	401	0
chr14	101267444	101268969	B_Cells_Pritchard.1783139	0	+	101267444	101268969	0	3	114,189,644	0,433,881
chr14	101267470	101268927	HepG2_Caltech_ENCODE.18497	0	+	101267470	101268927	0	3	88,474,602	0,122,855
chr14	101267491	101268768	K562.22778	0	+	101267491	101268768	0	3	67,189,443	0,386,834
chr14	101267516	101269069	REMC_MyoepithelialBreast.48700	0	+	101267516	101269069	0	2	42,1391	0,162
chr14	101267535	101268946	CD4_Plagnol_resting.31565	0	+	101267535	101268946	0	2	531,621	0,790
chr14	101267872	101268606	MDAMB231_Thompson.11326	0	+	101267872	101268606	0	2	194,281	0,453
chr14	101269128	101269783	B_Cells_Pritchard.1783141	0	.	101269128	101269783	0	1	655	0
chr14	101269358	101269800	B_cells_Cheung.102122	0	.	101269358	101269800	0	1	442	0
chr14	101270532	101271128	B_Cells_Pritchard.1783147	0	.	101270532	101271128	0	1	596	0
chr14	101270541	101271306	HepG2_Caltech_ENCODE.18499	0	.	101270541	101271306	0	1	765	0
chr14	101271241	101271870	CD4_Plagnol_resting.31568	0	.	101271241	101271870	0	1	629	0
chr14	101271263	101272014	MIP101.35106	0	.	101271263	101272014	0	1	751	0
chr14	101271276	101271872	CD4_Plagnol_activated.32434	0	.	101271276	101271872	0	1	596	0
chr14	101271369	101271865	B_Cells_Pritchard.1783149	0	.	101271369	101271865	0	1	496	0
chr14	101291704	101292109	A549_Myers.39946	0	.	101291704	101292109	0	1	405	0
chr14	101467019	101487569	MCF7_Burge_Thompson.15122	0	+	101467019	101487569	0	2	73,1054	0,19496
chr14	101467409	101468513	CD4_Plagnol_activated.32463	0	.	101467409	101468513	0	1	1104	0
chr14	101467985	101468524	B_cells_Cheung.102199	0	.	101467985	101468524	0	1	539	0
chr14	101468038	101468517	CD4_Plagnol_resting.31735	0	.	101468038	101468517	0	1	479	0
chr14	101468789	101497330	B_Cells_Pritchard.1783605	0	+	101468789	101497330	0	6	1750,1285,1348,586,354,744	0,13257,17436,19080,19885,27797
chr14	101482036	101483303	REMC_LuminalBreast.52019	0	.	101482036	101483303	0	1	1267	0
chr14	101482085	101482604	B_cells_Cheung.102203	0	.	101482085	101482604	0	1	519	0
chr14	101484445	101487546	B_Cells_Pritchard.1783607	0	-	101484445	101487546	0	3	1336,27,1292	0,1525,1809
chr14	101486008	101487580	HepG2_Caltech_ENCODE.18519	0	.	101486008	101487580	0	1	1572	0
chr14	101486057	101487591	H1_polyA+.59025	0	.	101486057	101487591	0	1	1534	0
chr14	101486064	101487599	REMC_LuminalBreast.52022	0	.	101486064	101487599	0	1	1535	0
chr14	101486066	101487554	REMC_MyoepithelialBreast.48743	0	.	101486066	101487554	0	1	1488	0
chr14	101486068	101487545	T47D_Burge_Thompson.14503	0	.	101486068	101487545	0	1	1477	0
chr14	101486097	101487596	K562.22781	0	.	101486097	101487596	0	1	1499	0
chr14	101486127	101487073	REMC_BreastStem.26275	0	.	101486127	101487073	0	1	946	0
chr14	101486203	101487602	B_cells_Cheung.102208	0	.	101486203	101487602	0	1	1399	0
chr14	101486213	101487530	BT20_Thompson.10818	0	.	101486213	101487530	0	1	1317	0
chr14	101486230	101487163	CD4_Plagnol_activated.32467	0	.	101486230	101487163	0	1	933	0
chr14	101486233	101487576	brain_AmbionMAQC.22185	0	.	101486233	101487576	0	1	1343	0
chr14	101486234	101490543	prostate_normal.29414	0	+	101486234	101490543	0	2	1182,56	0,4253
chr14	101486234	101487580	prostate_normal.29413	0	.	101486234	101487580	0	1	1346	0
chr14	101486235	101487553	MIP101.35381	0	.	101486235	101487553	0	1	1318	0
chr14	101486237	101487602	ZR751_Thompson.12174	0	.	101486237	101487602	0	1	1365	0
chr14	101486243	101487569	MCF7_Burge_Thompson.15123	0	.	101486243	101487569	0	1	1326	0
chr14	101486245	101487553	BT474_Burge_Thompson.16746	0	.	101486245	101487553	0	1	1308	0
chr14	101486264	101487348	H9_polyA+.23007	0	.	101486264	101487348	0	1	1084	0
chr14	101486278	101487580	melanoma_Garraway_short_term_cultures.34164	0	.	101486278	101487580	0	1	1302	0
chr14	101486352	101487416	HeLa_polyA+_Chen.18236	0	.	101486352	101487416	0	1	1064	0
chr14	101486413	101487218	MeWo_Garraway.18109	0	.	101486413	101487218	0	1	805	0
chr14	101486551	101487518	A549_Myers.40435	0	.	101486551	101487518	0	1	967	0
chr14	101487113	101487581	liver_polyA+.70140	0	.	101487113	101487581	0	1	468	0
chr14	101487193	101487537	colon_Burge.18882	0	.	101487193	101487537	0	1	344	0
chr14	101490474	101491377	B_cells_Cheung.102213	0	.	101490474	101491377	0	1	903	0
chr14	101490493	101491279	prostate_carcinoma.50741	0	.	101490493	101491279	0	1	786	0
chr14	101496378	101496846	B_cells_Cheung.102216	0	.	101496378	101496846	0	1	468	0
chr14	101496436	101497329	REMC_LuminalBreast.52025	0	.	101496436	101497329	0	1	893	0
chr14	101496443	101496849	A549_Myers.40440	0	.	101496443	101496849	0	1	406	0
chr14	101496913	101497234	B_cells_Cheung.102217	0	.	101496913	101497234	0	1	321	0
chr14	101498250	101499176	melanoma_Garraway_short_term_cultures.34167	0	.	101498250	101499176	0	1	926	0
chr14	101498273	101499023	A549_Myers.40441	0	.	101498273	101499023	0	1	750	0
chr14	101498347	101499236	H1_polyA+.59028	0	.	101498347	101499236	0	1	889	0
chr14	101498397	101499023	prostate_normal.29418	0	.	101498397	101499023	0	1	626	0
chr14	101498542	101499367	B_cells_Cheung.102219	0	.	101498542	101499367	0	1	825	0
chr14	101587934	101589187	CD4_Plagnol_activated.32658	0	.	101587934	101589187	0	1	1253	0
chr14	101588122	101588929	BT474_Burge_Thompson.16755	0	.	101588122	101588929	0	1	807	0
chr14	101588310	101589185	HeLa_polyA+_Chen.18239	0	.	101588310	101589185	0	1	875	0
chr14	101588344	101589246	MIP101.35390	0	.	101588344	101589246	0	1	902	0
chr14	101588363	101589114	H9_polyA+.23008	0	.	101588363	101589114	0	1	751	0
chr14	101588488	101589241	B_cells_Cheung.102282	0	.	101588488	101589241	0	1	753	0
chr14	101588490	101589236	CD4_Plagnol_resting.32064	0	.	101588490	101589236	0	1	746	0
chr14	101588491	101589245	melanoma_Garraway_short_term_cultures.34179	0	.	101588491	101589245	0	1	754	0
chr14	101588497	101589185	MDAMB231_Thompson.11336	0	.	101588497	101589185	0	1	688	0
chr14	101588512	101589246	prostate_normal.29543	0	.	101588512	101589246	0	1	734	0
chr14	101588565	101589189	A549_Myers.40452	0	.	101588565	101589189	0	1	624	0
chr14	101588585	101589193	MeWo_Garraway.18110	0	.	101588585	101589193	0	1	608	0
chr14	101588831	101589189	liver_polyA+.70164	0	.	101588831	101589189	0	1	358	0
chr14	101589783	101592512	H1_polyA+.59065	0	.	101589783	101592512	0	1	2729	0
chr14	101589863	101590631	MCF7_Burge_Thompson.15132	0	.	101589863	101590631	0	1	768	0
chr14	101590098	101590596	MeI_Garraway.9036	0	.	101590098	101590596	0	1	498	0
chr14	101590134	101590614	liver_polyA+.70165	0	.	101590134	101590614	0	1	480	0
chr14	101590300	101590626	A549_Myers.40453	0	.	101590300	101590626	0	1	326	0
chr14	101590897	101592505	HeLa_polyA+_Chen.18240	0	.	101590897	101592505	0	1	1608	0
chr14	101590917	101592219	brain_AmbionMAQC.22475	0	.	101590917	101592219	0	1	1302	0
chr14	101590918	101592201	B_cells_Cheung.102284	0	.	101590918	101592201	0	1	1283	0
chr14	101590924	101592518	CD4_Plagnol_activated.32487	0	.	101590924	101592518	0	1	1594	0
chr14	101590927	101592200	CD4_Plagnol_resting.31619	0	.	101590927	101592200	0	1	1273	0
chr14	101590942	101592384	melanoma_Garraway_short_term_cultures.34181	0	.	101590942	101592384	0	1	1442	0
chr14	101591007	101592264	BT474_Burge_Thompson.16757	0	.	101591007	101592264	0	1	1257	0
chr14	101591021	101592219	MCF7_Burge_Thompson.15133	0	.	101591021	101592219	0	1	1198	0
chr14	101591051	101592140	MCF10A_Thompson.10990	0	.	101591051	101592140	0	1	1089	0
chr14	101591057	101592143	MeI_Garraway.9037	0	.	101591057	101592143	0	1	1086	0
chr14	101591061	101592186	BT20_Thompson.10827	0	.	101591061	101592186	0	1	1125	0
chr14	101591069	101592203	H9_polyA+.23010	0	.	101591069	101592203	0	1	1134	0
chr14	101591073	101592196	MeWo_Garraway.18112	0	.	101591073	101592196	0	1	1123	0
chr14	101591129	101592505	HepG2_Caltech_ENCODE.18525	0	.	101591129	101592505	0	1	1376	0
chr14	101591163	101592138	MDAMB231_Thompson.11339	0	.	101591163	101592138	0	1	975	0
chr14	101591298	101592125	T47D_Burge_Thompson.14513	0	.	101591298	101592125	0	1	827	0
chr14	101591385	101592150	ZR751_Thompson.12180	0	.	101591385	101592150	0	1	765	0
chr14	101591467	101592327	lymph_node_Burge.24523	0	.	101591467	101592327	0	1	860	0
chr14	101591477	101591919	testes_Burge.26380	0	.	101591477	101591919	0	1	442	0
chr14	101592913	101593750	A549_Myers.39987	0	.	101592913	101593750	0	1	837	0
chr14	101592913	101593750	A549_Myers.39988	0	+	101592913	101593750	0	2	505,214	0,623
chr14	101592923	101593984	melanoma_Garraway_short_term_cultures.34182	0	.	101592923	101593984	0	1	1061	0
chr14	101595746	101597612	REMC_MyoepithelialBreast.48950	0	.	101595746	101597612	0	1	1866	0
chr14	101595998	101598968	REMC_LuminalBreast.52043	0	.	101595998	101598968	0	1	2970	0
chr14	101598711	101599678	REMC_MyoepithelialBreast.48952	0	.	101598711	101599678	0	1	967	0
chr14	101599790	101601113	REMC_MyoepithelialBreast.48953	0	.	101599790	101601113	0	1	1323	0
chr14	101601226	101604106	REMC_MyoepithelialBreast.48954	0	.	101601226	101604106	0	1	2880	0
chr14	101601245	101604107	REMC_LuminalBreast.52045	0	.	101601245	101604107	0	1	2862	0
chr14	101604294	101609100	REMC_BreastStem.26532	0	.	101604294	101609100	0	1	4806	0
chr14	101604296	101608768	REMC_LuminalBreast.52046	0	.	101604296	101608768	0	1	4472	0
chr14	101609262	101610131	REMC_MyoepithelialBreast.48956	0	.	101609262	101610131	0	1	869	0
chr14	101846034	101846554	B_cells_Cheung.102438	0	.	101846034	101846554	0	1	520	0
chr14	102039653	102041439	CD4_Plagnol_resting.31701	0	.	102039653	102041439	0	1	1786	0
chr14	102039755	102041003	MeI_Garraway.8978	0	.	102039755	102041003	0	1	1248	0
chr14	102039965	102041369	testes_Burge.26442	0	.	102039965	102041369	0	1	1404	0
chr14	102039977	102041252	lymph_node_Burge.24407	0	.	102039977	102041252	0	1	1275	0
chr14	102039978	102041652	skeletal_muscle_Burge.14820	0	.	102039978	102041652	0	1	1674	0
chr14	102040300	102040694	H1_rRNA-depleted_UCSD_REMC.46019	0	.	102040300	102040694	0	1	394	0
chr14	102040629	102041154	MB435_Burge.20849	0	.	102040629	102041154	0	1	525	0
chr14	102040641	102041023	adipose_Burge.19394	0	.	102040641	102041023	0	1	382	0
chr14	102049048	102049724	prostate_carcinoma.50541	0	.	102049048	102049724	0	1	676	0
chr14	102049985	102050467	prostate_carcinoma.50542	0	.	102049985	102050467	0	1	482	0
chr14	102050114	102050466	B_Cells_Pritchard.1785117	0	+	102050114	102050466	0	1	352	0
chr14	102050519	102050939	B_cells_Cheung.102511	0	.	102050519	102050939	0	1	420	0
chr14	102050548	102051023	A549_Myers.40065	0	.	102050548	102051023	0	1	475	0
chr14	102050992	102051550	B_cells_Cheung.102512	0	.	102050992	102051550	0	1	558	0
chr14	102052495	102053206	B_cells_Cheung.102513	0	.	102052495	102053206	0	1	711	0
chr14	102052601	102053533	A549_Myers.40066	0	.	102052601	102053533	0	1	932	0
chr14	102053716	102054285	MIP101.35249	0	.	102053716	102054285	0	1	569	0
chr14	102054679	102055013	MIP101.35250	0	.	102054679	102055013	0	1	334	0
chr14	102059554	102060130	melanoma_Garraway_short_term_cultures.34241	0	.	102059554	102060130	0	1	576	0
chr14	102059612	102060269	B_cells_Cheung.102521	0	.	102059612	102060269	0	1	657	0
chr14	102059615	102060450	MIP101.35253	0	.	102059615	102060450	0	1	835	0
chr14	102059616	102062493	B_Cells_Pritchard.1785209	0	.	102059616	102062493	0	1	2877	0
chr14	102061091	102061911	HepG2_Caltech_ENCODE.18541	0	.	102061091	102061911	0	1	820	0
chr14	102061917	102063097	H1_polyA+.59162	0	.	102061917	102063097	0	1	1180	0
chr14	102063576	102070169	A549_Myers.40073	0	-	102063576	102070169	0	3	561,78,36	0,2181,6557
chr14	102063576	102064253	A549_Myers.40072	0	.	102063576	102064253	0	1	677	0
chr14	102074045	102074492	A549_Myers.40074	0	.	102074045	102074492	0	1	447	0
chr14	102079289	102079882	A549_Myers.40075	0	.	102079289	102079882	0	1	593	0
chr14	102080026	102080629	A549_Myers.40076	0	.	102080026	102080629	0	1	603	0
chr14	102081058	102081406	A549_Myers.40077	0	.	102081058	102081406	0	1	348	0
chr14	102081463	102082003	A549_Myers.40078	0	.	102081463	102082003	0	1	540	0
chr14	102086326	102088549	HepG2_Caltech_ENCODE.18544	0	.	102086326	102088549	0	1	2223	0
chr14	102088645	102089103	B_cells_Cheung.102524	0	.	102088645	102089103	0	1	458	0
chr14	102088967	102089317	HeLa_polyA-_Chen.9802	0	.	102088967	102089317	0	1	350	0
chr14	102090548	102091946	B_cells_Cheung.102526	0	.	102090548	102091946	0	1	1398	0
chr14	102090560	102091895	B_Cells_Pritchard.1785339	0	.	102090560	102091895	0	1	1335	0
chr14	102090601	102091782	H1_polyA+.59164	0	.	102090601	102091782	0	1	1181	0
chr14	102090685	102091924	HepG2_Caltech_ENCODE.18548	0	.	102090685	102091924	0	1	1239	0
chr14	102090818	102091900	MDAMB231_Thompson.11376	0	.	102090818	102091900	0	1	1082	0
chr14	102090944	102091349	H1_rRNA-depleted_UCSD_REMC.46026	0	.	102090944	102091349	0	1	405	0
chr14	102091322	102091823	HeLa_polyA+_Chen.18309	0	.	102091322	102091823	0	1	501	0
chr14	102092685	102093299	HeLa_polyA+_Chen.18310	0	.	102092685	102093299	0	1	614	0
chr14	102093299	102094070	HeLa_polyA+_Chen.18311	0	.	102093299	102094070	0	1	771	0
chr14	102093502	102094033	HeLa_polyA-_Chen.9803	0	.	102093502	102094033	0	1	531	0
chr14	102093513	102094005	K562.22831	0	.	102093513	102094005	0	1	492	0
chr14	102119734	102120665	melanoma_Garraway_short_term_cultures.34242	0	.	102119734	102120665	0	1	931	0
chr14	102121346	102123135	H1_polyA+.59165	0	.	102121346	102123135	0	1	1789	0
chr14	102122151	102123346	B_cells_Cheung.102531	0	.	102122151	102123346	0	1	1195	0
chr14	102125718	102127312	HepG2_Caltech_ENCODE.18550	0	.	102125718	102127312	0	1	1594	0
chr14	102125721	102127405	HeLa_polyA+_Chen.18315	0	.	102125721	102127405	0	1	1684	0
chr14	102125814	102126661	MIP101.35255	0	.	102125814	102126661	0	1	847	0
chr14	102125821	102127170	melanoma_Garraway_short_term_cultures.34244	0	.	102125821	102127170	0	1	1349	0
chr14	102125842	102127369	K562.22833	0	.	102125842	102127369	0	1	1527	0
chr14	102125873	102127620	REMC_LuminalBreast.52094	0	.	102125873	102127620	0	1	1747	0
chr14	102126107	102127771	REMC_MyoepithelialBreast.48820	0	.	102126107	102127771	0	1	1664	0
chr14	102126394	102127254	prostate_carcinoma.50545	0	.	102126394	102127254	0	1	860	0
chr14	102268965	102270119	B_cells_Cheung.102688	0	.	102268965	102270119	0	1	1154	0
chr14	102269019	102269820	CD4_Plagnol_activated.32594	0	.	102269019	102269820	0	1	801	0
chr14	102270568	102272278	H1_polyA+.59277	0	.	102270568	102272278	0	1	1710	0
chr14	102271520	102272167	B_cells_Cheung.102690	0	.	102271520	102272167	0	1	647	0
chr14	102272927	102292628	H1_polyA+.59279	0	-	102272927	102292628	0	2	1055,2665	0,17036
chr14	102274620	102276148	B_Cells_Pritchard.1786037	0	.	102274620	102276148	0	1	1528	0
chr14	102275230	102276126	B_cells_Cheung.102567	0	.	102275230	102276126	0	1	896	0
chr14	102275347	102276215	H1_polyA+.59280	0	.	102275347	102276215	0	1	868	0
chr14	102275696	102276103	REMC_MyoepithelialBreast.48865	0	.	102275696	102276103	0	1	407	0
chr14	102276507	102277316	B_cells_Cheung.102568	0	.	102276507	102277316	0	1	809	0
chr14	102276526	102277013	H1_polyA+.59281	0	.	102276526	102277013	0	1	487	0
chr14	102278822	102280034	B_cells_Cheung.102569	0	.	102278822	102280034	0	1	1212	0
chr14	102278830	102279212	H1_polyA+.59282	0	.	102278830	102279212	0	1	382	0
chr14	102279554	102296316	B_Cells_Pritchard.1786061	0	-	102279554	102296316	0	3	441,4137,1075	0,8308,15687
chr14	102279565	102279900	CD4_Plagnol_resting.31713	0	.	102279565	102279900	0	1	335	0
chr14	102281573	102284533	REMC_LuminalBreast.52195	0	.	102281573	102284533	0	1	2960	0
chr14	102282111	102284216	REMC_MyoepithelialBreast.48866	0	.	102282111	102284216	0	1	2105	0
chr14	102282149	102283229	H1_polyA+.59283	0	-	102282149	102283229	0	2	975,17	0,1063
chr14	102282405	102296316	B_Cells_Pritchard.1786059	0	+	102282405	102296316	0	4	1753,3165,630,1070	0,7237,10945,12841
chr14	102282524	102283647	B_cells_Cheung.102570	0	.	102282524	102283647	0	1	1123	0
chr14	102282642	102283718	BT474_Burge_Thompson.16797	0	.	102282642	102283718	0	1	1076	0
chr14	102283988	102287408	khalil_771	0	.	102283988	102287408	0	3	1246,66,235	0,1318,3185
chr14	102284672	102294550	REMC_LuminalBreast.52196	0	.	102284672	102294550	0	1	9878	0
chr14	102284696	102286129	H1_polyA+.59285	0	.	102284696	102286129	0	1	1433	0
chr14	102284698	102293080	REMC_MyoepithelialBreast.48867	0	.	102284698	102293080	0	1	8382	0
chr14	102284835	102287713	MIP101.35305	0	.	102284835	102287713	0	1	2878	0
chr14	102284939	102285344	A549_Myers.40102	0	.	102284939	102285344	0	1	405	0
chr14	102285478	102286683	prostate_carcinoma.50564	0	.	102285478	102286683	0	1	1205	0
chr14	102285629	102286228	A549_Myers.40103	0	.	102285629	102286228	0	1	599	0
chr14	102285763	102286457	B_cells_Cheung.102573	0	.	102285763	102286457	0	1	694	0
chr14	102286217	102286887	H1_polyA+.59286	0	.	102286217	102286887	0	1	670	0
chr14	102286529	102287361	B_cells_Cheung.102574	0	.	102286529	102287361	0	1	832	0
chr14	102286997	102287778	H1_polyA+.59287	0	.	102286997	102287778	0	1	781	0
chr14	102287127	102287635	A549_Myers.40104	0	.	102287127	102287635	0	1	508	0
chr14	102287859	102292570	MIP101.35302	0	.	102287859	102292570	0	1	4711	0
chr14	102287869	102288450	B_cells_Cheung.102576	0	.	102287869	102288450	0	1	581	0
chr14	102288029	102288495	A549_Myers.40105	0	.	102288029	102288495	0	1	466	0
chr14	102288627	102292628	H1_polyA+.59278	0	.	102288627	102292628	0	1	4001	0
chr14	102288749	102289561	prostate_carcinoma.50565	0	.	102288749	102289561	0	1	812	0
chr14	102289067	102290504	B_cells_Cheung.102577	0	.	102289067	102290504	0	1	1437	0
chr14	102289614	102290476	prostate_carcinoma.50566	0	.	102289614	102290476	0	1	862	0
chr14	102289860	102290361	K562.23396	0	.	102289860	102290361	0	1	501	0
chr14	102289878	102292561	melanoma_Garraway_short_term_cultures.34260	0	.	102289878	102292561	0	1	2683	0
chr14	102290534	102292482	prostate_carcinoma.50567	0	.	102290534	102292482	0	1	1948	0
chr14	102293333	102294552	H1_polyA+.59200	0	.	102293333	102294552	0	1	1219	0
chr14	102293340	102294556	REMC_MyoepithelialBreast.48868	0	.	102293340	102294556	0	1	1216	0
chr14	102293346	102294570	MIP101.35306	0	.	102293346	102294570	0	1	1224	0
chr14	102293552	102294568	B_cells_Cheung.102580	0	.	102293552	102294568	0	1	1016	0
chr14	102293638	102294370	melanoma_Garraway_short_term_cultures.34261	0	.	102293638	102294370	0	1	732	0
chr14	102293644	102294226	prostate_carcinoma.50568	0	.	102293644	102294226	0	1	582	0
chr14	102294802	102297903	REMC_MyoepithelialBreast.48869	0	.	102294802	102297903	0	1	3101	0
chr14	102294808	102297802	REMC_LuminalBreast.52197	0	.	102294808	102297802	0	1	2994	0
chr14	102295292	102297706	H1_polyA+.59202	0	.	102295292	102297706	0	1	2414	0
chr14	102295298	102297740	melanoma_Garraway_short_term_cultures.34262	0	.	102295298	102297740	0	1	2442	0
chr14	102295977	102297691	MIP101.35309	0	.	102295977	102297691	0	1	1714	0
chr14	102296417	102306627	B_Cells_Pritchard.1786115	0	+	102296417	102306627	0	5	1413,383,319,196,719	0,4914,6984,7377,9491
chr14	102296619	102297248	A549_Myers.40107	0	.	102296619	102297248	0	1	629	0
chr14	102296824	102297788	B_cells_Cheung.102584	0	.	102296824	102297788	0	1	964	0
chr14	102296863	102297697	MCF7_Burge_Thompson.15234	0	.	102296863	102297697	0	1	834	0
chr14	102298058	102298518	B_cells_Cheung.102585	0	.	102298058	102298518	0	1	460	0
chr14	102299612	102305757	REMC_LuminalBreast.52199	0	.	102299612	102305757	0	1	6145	0
chr14	102301312	102301744	B_cells_Cheung.102589	0	.	102301312	102301744	0	1	432	0
chr14	102301349	102302964	REMC_MyoepithelialBreast.48871	0	.	102301349	102302964	0	1	1615	0
chr14	102302001	102302676	melanoma_Garraway_short_term_cultures.34263	0	.	102302001	102302676	0	1	675	0
chr14	102304682	102305752	B_cells_Cheung.102593	0	.	102304682	102305752	0	1	1070	0
chr14	102305874	102310133	REMC_LuminalBreast.52200	0	.	102305874	102310133	0	1	4259	0
chr14	102309342	102309864	B_Cells_Pritchard.1786173	0	.	102309342	102309864	0	1	522	0
chr14	102310562	102311524	B_Cells_Pritchard.1786175	0	.	102310562	102311524	0	1	962	0
chr14	102311052	102311555	B_cells_Cheung.102598	0	.	102311052	102311555	0	1	503	0
chr14	102449618	102451825	REMC_BreastStem.26411	0	.	102449618	102451825	0	1	2207	0
chr14	102450519	102452073	H1_polyA+.59372	0	.	102450519	102452073	0	1	1554	0
chr14	102450787	102451520	CD4_Plagnol_activated.32620	0	.	102450787	102451520	0	1	733	0
chr14	102450798	102451296	A549_Myers.40136	0	.	102450798	102451296	0	1	498	0
chr14	102452416	102455444	B_cells_Cheung.102622	0	.	102452416	102455444	0	1	3028	0
chr14	102452433	102457500	B_Cells_Pritchard.1786523	0	-	102452433	102457500	0	2	2775,1238	0,3829
chr14	102452436	102453971	H1_polyA+.59373	0	.	102452436	102453971	0	1	1535	0
chr14	102452450	102453287	melanoma_Garraway_short_term_cultures.34296	0	.	102452450	102453287	0	1	837	0
chr14	102452463	102455239	REMC_BreastStem.26412	0	.	102452463	102455239	0	1	2776	0
chr14	102453171	102454022	CD4_Plagnol_activated.32622	0	.	102453171	102454022	0	1	851	0
chr14	102454046	102455272	melanoma_Garraway_short_term_cultures.34297	0	.	102454046	102455272	0	1	1226	0
chr14	102454144	102455192	H1_polyA+.59374	0	.	102454144	102455192	0	1	1048	0
chr14	102454208	102455234	CD4_Plagnol_activated.32623	0	.	102454208	102455234	0	1	1026	0
chr14	102454905	102455855	ZR751_Thompson.12228	0	.	102454905	102455855	0	1	950	0
chr14	102455975	102457254	H1_polyA+.59375	0	.	102455975	102457254	0	1	1279	0
chr14	102456091	102457431	melanoma_Garraway_short_term_cultures.34299	0	.	102456091	102457431	0	1	1340	0
chr14	102456199	102457206	B_cells_Cheung.102624	0	.	102456199	102457206	0	1	1007	0
chr14	102456206	102457314	CD4_Plagnol_activated.32624	0	.	102456206	102457314	0	1	1108	0
chr14	102456235	102457420	BT474_Burge_Thompson.16819	0	.	102456235	102457420	0	1	1185	0
chr14	102456237	102457515	REMC_BreastStem.26414	0	.	102456237	102457515	0	1	1278	0
chr14	102456240	102457432	prostate_carcinoma.50604	0	.	102456240	102457432	0	1	1192	0
chr14	102456272	102456813	CD4_Plagnol_resting.31747	0	.	102456272	102456813	0	1	541	0
chr14	102456278	102456966	prostate_normal.29521	0	.	102456278	102456966	0	1	688	0
chr14	102457065	102457413	prostate_normal.29522	0	.	102457065	102457413	0	1	348	0
chr14	102593903	102594446	MCF7_Burge_Thompson.15284	0	+	102593903	102594446	0	2	306,63	0,480
chr14	102604743	102605153	A549_Myers.40166	0	.	102604743	102605153	0	1	410	0
chr14	102606176	102606558	A549_Myers.40167	0	.	102606176	102606558	0	1	382	0
chr14	102606615	102607432	HeLa_polyA-_Chen.9817	0	.	102606615	102607432	0	1	817	0
chr14	102607297	102610041	A549_Myers.40168	0	-	102607297	102610041	0	2	66,1441	0,1303
chr14	102608685	102609230	HeLa_polyA+_Chen.18321	0	.	102608685	102609230	0	1	545	0
chr14	102608699	102609267	melanoma_Garraway_short_term_cultures.34308	0	.	102608699	102609267	0	1	568	0
chr14	102610835	102611386	A549_Myers.40170	0	.	102610835	102611386	0	1	551	0
chr14	102611439	102612056	A549_Myers.40171	0	.	102611439	102612056	0	1	617	0
chr14	102614932	102615296	A549_Myers.40172	0	.	102614932	102615296	0	1	364	0
chr14	102618144	102618514	B_Cells_Pritchard.1786771	0	.	102618144	102618514	0	1	370	0
chr14	102620517	102620932	A549_Myers.40174	0	.	102620517	102620932	0	1	415	0
chr14	102626188	102626650	A549_Myers.40177	0	.	102626188	102626650	0	1	462	0
chr14	102648270	102650023	B_Cells_Pritchard.1786877	0	+	102648270	102650023	0	2	823,334	0,1419
chr14	102649604	102650457	prostate_carcinoma.50634	0	.	102649604	102650457	0	1	853	0
chr14	102649754	102650705	REMC_LuminalBreast.52345	0	.	102649754	102650705	0	1	951	0
chr14	102650962	102651321	K562.22900	0	.	102650962	102651321	0	1	359	0
chr14	102651993	102653109	REMC_LuminalBreast.52347	0	.	102651993	102653109	0	1	1116	0
chr14	102652550	102653156	B_cells_Cheung.102700	0	.	102652550	102653156	0	1	606	0
chr14	102652567	102653122	H1_polyA+.59289	0	.	102652567	102653122	0	1	555	0
chr14	102652741	102653112	ZR751_Thompson.12229	0	.	102652741	102653112	0	1	371	0
chr14	102653859	102654773	REMC_LuminalBreast.52348	0	.	102653859	102654773	0	1	914	0
chr14	102653988	102655210	H1_polyA+.59290	0	.	102653988	102655210	0	1	1222	0
chr14	102656125	102657795	H1_polyA+.59291	0	.	102656125	102657795	0	1	1670	0
chr14	102656977	102659128	testes_Burge.26491	0	-	102656977	102659128	0	2	144,430	0,1721
chr14	102657249	102657929	B_cells_Cheung.102707	0	.	102657249	102657929	0	1	680	0
chr14	102658564	102659300	REMC_MyoepithelialBreast.48941	0	.	102658564	102659300	0	1	736	0
chr14	102674734	102676162	H1_polyA+.59294	0	+	102674734	102676162	0	2	616,400	0,1028
chr14	102677298	102678904	REMC_MyoepithelialBreast.49025	0	.	102677298	102678904	0	1	1606	0
chr14	102681235	102688902	REMC_LuminalBreast.52266	0	.	102681235	102688902	0	1	7667	0
chr14	102685354	102688830	REMC_BreastStem.27515	0	.	102685354	102688830	0	1	3476	0
chr14	102685354	102698324	REMC_BreastStem.27517	0	+	102685354	102698324	0	2	2333,35	0,12935
chr14	102685365	102685973	REMC_MyoepithelialBreast.49020	0	.	102685365	102685973	0	1	608	0
chr14	102688925	102691838	REMC_BreastStem.27518	0	.	102688925	102691838	0	1	2913	0
chr14	102688994	102691528	REMC_LuminalBreast.52268	0	.	102688994	102691528	0	1	2534	0
chr14	102691190	102691562	A549_Myers.40186	0	.	102691190	102691562	0	1	372	0
chr14	102691736	102696857	REMC_LuminalBreast.52267	0	.	102691736	102696857	0	1	5121	0
chr14	102691802	102692211	A549_Myers.40187	0	.	102691802	102692211	0	1	409	0
chr14	102692898	102693287	A549_Myers.40188	0	.	102692898	102693287	0	1	389	0
chr14	102696939	102700183	REMC_LuminalBreast.52269	0	.	102696939	102700183	0	1	3244	0
chr14	102697007	102697390	A549_Myers.40189	0	.	102697007	102697390	0	1	383	0
chr14	102697058	102699953	REMC_BreastStem.27516	0	.	102697058	102699953	0	1	2895	0
chr14	102697072	102699668	REMC_MyoepithelialBreast.49022	0	.	102697072	102699668	0	1	2596	0
chr14	102700748	102702543	REMC_LuminalBreast.52270	0	.	102700748	102702543	0	1	1795	0
chr14	102700989	102702562	REMC_BreastStem.27519	0	.	102700989	102702562	0	1	1573	0
chr14	102703194	102706076	REMC_LuminalBreast.52271	0	.	102703194	102706076	0	1	2882	0
chr14	102706223	102707951	REMC_LuminalBreast.52272	0	.	102706223	102707951	0	1	1728	0
chr14	102708241	102716770	REMC_LuminalBreast.52273	0	.	102708241	102716770	0	1	8529	0
chr14	102710800	102711672	REMC_BreastStem.26426	0	.	102710800	102711672	0	1	872	0
chr14	102711736	102712267	REMC_BreastStem.26427	0	.	102711736	102712267	0	1	531	0
chr14	102714592	102716755	REMC_BreastStem.26428	0	.	102714592	102716755	0	1	2163	0
chr14	102720184	102720905	REMC_LuminalBreast.52275	0	.	102720184	102720905	0	1	721	0
chr14	102722911	102725173	REMC_LuminalBreast.52277	0	.	102722911	102725173	0	1	2262	0
chr14	102723310	102725646	H1_polyA+.59296	0	-	102723310	102725646	0	2	1050,1180	0,1156
chr14	102723314	102725118	HIT000266895	0	+	102723314	102725118	0	3	1046,71,437	0,1152,1367
chr14	102723341	102723662	H9_polyA+.23073	0	.	102723341	102723662	0	1	321	0
chr14	102723599	102724541	B_cells_Cheung.102758	0	.	102723599	102724541	0	1	942	0
chr14	102723691	102726042	B_Cells_Pritchard.1787187	0	.	102723691	102726042	0	1	2351	0
chr14	102723810	102724362	prostate_carcinoma.50640	0	.	102723810	102724362	0	1	552	0
chr14	102723877	102724876	REMC_BreastStem.26431	0	.	102723877	102724876	0	1	999	0
chr14	102724219	102725693	testes_Burge.26494	0	-	102724219	102725693	0	2	141,274	0,1200
chr14	102724591	102725378	B_cells_Cheung.102759	0	.	102724591	102725378	0	1	787	0
chr14	102724822	102725281	A549_Myers.40194	0	.	102724822	102725281	0	1	459	0
chr14	102724911	102725330	H9_polyA+.23075	0	.	102724911	102725330	0	1	419	0
chr14	102725652	102725985	B_cells_Cheung.102760	0	.	102725652	102725985	0	1	333	0
chr14	102756241	102756823	A549_Myers.40195	0	.	102756241	102756823	0	1	582	0
chr14	102759515	102760713	REMC_BreastStem.26440	0	.	102759515	102760713	0	1	1198	0
chr14	102765016	102766172	REMC_BreastStem.26443	0	.	102765016	102766172	0	1	1156	0
chr14	102765545	102765936	A549_Myers.40196	0	.	102765545	102765936	0	1	391	0
chr14	102766247	102766882	REMC_BreastStem.26444	0	.	102766247	102766882	0	1	635	0
chr14	102791904	102815892	pHIT000113820	0	+	102791904	102815892	0	2	14,592	0,23396
chr14	102796396	102796983	prostate_carcinoma.50648	0	.	102796396	102796983	0	1	587	0
chr14	102798186	102800299	REMC_LuminalBreast.52279	0	.	102798186	102800299	0	1	2113	0
chr14	102799738	102800731	REMC_MyoepithelialBreast.49023	0	.	102799738	102800731	0	1	993	0
chr14	102800795	102809394	REMC_LuminalBreast.52280	0	-	102800795	102809394	0	2	3643,22	0,8577
chr14	102802794	102804181	REMC_BreastStem.26448	0	.	102802794	102804181	0	1	1387	0
chr14	102814857	102817051	H1_polyA+.59301	0	.	102814857	102817051	0	1	2194	0
chr14	102815183	102816236	H9_polyA+.23078	0	.	102815183	102816236	0	1	1053	0
chr14	102815299	102816045	XR_037870	0	+	102815299	102816045	0	1	746	0
chr14	102815725	102816245	prostate_carcinoma.50653	0	.	102815725	102816245	0	1	520	0
chr14	102837766	102838093	B_Cells_Pritchard.1787447	0	.	102837766	102838093	0	1	327	0
chr14	102847195	102848497	B_Cells_Pritchard.1787489	0	.	102847195	102848497	0	1	1302	0
chr14	102851102	102852043	B_Cells_Pritchard.1787501	0	.	102851102	102852043	0	1	941	0
chr14	102851181	102852423	BT474_Burge_Thompson.16835	0	.	102851181	102852423	0	1	1242	0
chr14	102852820	102853196	B_Cells_Pritchard.1787505	0	.	102852820	102853196	0	1	376	0
chr14	102862316	102863531	B_Cells_Pritchard.1788355	0	+	102862316	102863531	0	1	1215	0
chr14	102866743	102867172	B_Cells_Pritchard.1788369	0	+	102866743	102867172	0	1	429	0
chr14	102885637	102886655	melanoma_Garraway_short_term_cultures.34319	0	.	102885637	102886655	0	1	1018	0
chr14	102887548	102895574	REMC_LuminalBreast.52284	0	.	102887548	102895574	0	1	8026	0
chr14	102890183	102897053	REMC_MyoepithelialBreast.49063	0	.	102890183	102897053	0	1	6870	0
chr14	102890183	102897053	REMC_MyoepithelialBreast.49062	0	+	102890183	102897053	0	2	6371,385	0,6485
chr14	102895741	102897141	REMC_LuminalBreast.52286	0	.	102895741	102897141	0	1	1400	0
chr14	102895741	102897141	REMC_LuminalBreast.52285	0	+	102895741	102897141	0	2	813,473	0,927
chr14	102905204	102906354	REMC_LuminalBreast.52291	0	.	102905204	102906354	0	1	1150	0
chr14	102907061	102909473	REMC_MyoepithelialBreast.49069	0	.	102907061	102909473	0	1	2412	0
chr14	102911264	102913372	REMC_BreastStem.26487	0	.	102911264	102913372	0	1	2108	0
chr14	102913660	102916582	REMC_MyoepithelialBreast.49071	0	.	102913660	102916582	0	1	2922	0
chr14	103040989	103041857	MIP101.35522	0	.	103040989	103041857	0	1	868	0
chr14	103041059	103041811	prostate_normal.29673	0	.	103041059	103041811	0	1	752	0
chr14	103041384	103041854	kidney_Gilad.45503	0	.	103041384	103041854	0	1	470	0
chr14	103041428	103041835	H1_rRNA-depleted_UCSD_REMC.46124	0	.	103041428	103041835	0	1	407	0
chr14	103042832	103048064	REMC_MyoepithelialBreast.49110	0	.	103042832	103048064	0	1	5232	0
chr14	103042845	103043236	CD4_Plagnol_activated.32663	0	.	103042845	103043236	0	1	391	0
chr14	103042856	103046857	REMC_LuminalBreast.52324	0	.	103042856	103046857	0	1	4001	0
chr14	103042856	103048005	REMC_LuminalBreast.52326	0	-	103042856	103048005	0	2	3876,789	0,4360
chr14	103044586	103045552	B_cells_Cheung.102847	0	.	103044586	103045552	0	1	966	0
chr14	103044604	103048022	REMC_BreastStem.26463	0	.	103044604	103048022	0	1	3418	0
chr14	103044632	103045556	MIP101.35524	0	.	103044632	103045556	0	1	924	0
chr14	103048393	103049759	B_cells_Cheung.102850	0	.	103048393	103049759	0	1	1366	0
chr14	103048500	103050956	REMC_LuminalBreast.52327	0	.	103048500	103050956	0	1	2456	0
chr14	103048504	103050361	REMC_BreastStem.26464	0	.	103048504	103050361	0	1	1857	0
chr14	103048540	103050488	REMC_MyoepithelialBreast.49026	0	.	103048540	103050488	0	1	1948	0
chr14	103048712	103050188	HIT000490805	0	+	103048712	103050188	0	1	1476	0
chr14	103049033	103050276	MIP101.35526	0	.	103049033	103050276	0	1	1243	0
chr14	103049081	103049686	A549_Myers.40229	0	.	103049081	103049686	0	1	605	0
chr14	103050669	103052174	B_cells_Cheung.102852	0	.	103050669	103052174	0	1	1505	0
chr14	103050689	103051902	REMC_MyoepithelialBreast.49027	0	.	103050689	103051902	0	1	1213	0
chr14	103050727	103051808	CD4_Plagnol_activated.32666	0	.	103050727	103051808	0	1	1081	0
chr14	103050806	103052120	B_Cells_Pritchard.1787701	0	+	103050806	103052120	0	1	1314	0
chr14	103051038	103053926	REMC_LuminalBreast.52328	0	.	103051038	103053926	0	1	2888	0
chr14	103052043	103053942	REMC_MyoepithelialBreast.49028	0	.	103052043	103053942	0	1	1899	0
chr14	103053287	103053643	B_cells_Cheung.102854	0	.	103053287	103053643	0	1	356	0
chr14	103060092	103060631	A549_Myers.40234	0	.	103060092	103060631	0	1	539	0
chr14	103061083	103065131	HIT000096316	0	-	103061083	103065131	0	1	4048	0
chr14	103061915	103063658	HepG2_Caltech_ENCODE.18593	0	.	103061915	103063658	0	1	1743	0
chr14	103061980	103063082	CD4_Plagnol_resting.31798	0	.	103061980	103063082	0	1	1102	0
chr14	103062015	103062844	BT474_Burge_Thompson.16841	0	.	103062015	103062844	0	1	829	0
chr14	103062599	103063060	A549_Myers.40235	0	.	103062599	103063060	0	1	461	0
chr14	103062628	103063705	REMC_MyoepithelialBreast.49031	0	.	103062628	103063705	0	1	1077	0
chr14	103062686	103063339	CD4_Plagnol_activated.32670	0	.	103062686	103063339	0	1	653	0
chr14	103074977	103075625	prostate_normal.29549	0	.	103074977	103075625	0	1	648	0
chr14	103074984	103075742	MDAMB468_Thompson.12410	0	.	103074984	103075742	0	1	758	0
chr14	103075710	103081464	prostate_normal.29550	0	+	103075710	103081464	0	2	166,1616	0,4138
chr14	103076100	103084393	REMC_MyoepithelialBreast.49034	0	.	103076100	103084393	0	1	8293	0
chr14	103076105	103082748	B_cells_Cheung.102858	0	.	103076105	103082748	0	1	6643	0
chr14	103076473	103078742	prostate_normal.29552	0	.	103076473	103078742	0	1	2269	0
chr14	103077311	103078311	MCF7_Burge_Thompson.15259	0	.	103077311	103078311	0	1	1000	0
chr14	103077396	103078567	HepG2_Caltech_ENCODE.18595	0	.	103077396	103078567	0	1	1171	0
chr14	103077856	103078750	REMC_LuminalBreast.52337	0	.	103077856	103078750	0	1	894	0
chr14	103077937	103078654	H1_polyA+.59555	0	.	103077937	103078654	0	1	717	0
chr14	103078858	103080509	REMC_LuminalBreast.52338	0	.	103078858	103080509	0	1	1651	0
chr14	103079003	103081464	prostate_normal.29551	0	.	103079003	103081464	0	1	2461	0
chr14	103079153	103080600	MCF7_Burge_Thompson.15260	0	.	103079153	103080600	0	1	1447	0
chr14	103080591	103082360	REMC_LuminalBreast.52339	0	.	103080591	103082360	0	1	1769	0
chr14	103080899	103081823	MCF7_Burge_Thompson.15261	0	.	103080899	103081823	0	1	924	0
chr14	103081352	103082254	CD4_Plagnol_resting.31801	0	.	103081352	103082254	0	1	902	0
chr14	103081696	103082335	MIP101.35530	0	.	103081696	103082335	0	1	639	0
chr14	103081961	103082738	prostate_normal.29556	0	.	103081961	103082738	0	1	777	0
chr14	103082074	103083506	A549_Myers.40244	0	.	103082074	103083506	0	1	1432	0
chr14	103082335	103082893	MIP101.35531	0	.	103082335	103082893	0	1	558	0
chr14	103082521	103083241	MCF7_Burge_Thompson.15262	0	.	103082521	103083241	0	1	720	0
chr14	103082626	103084322	REMC_LuminalBreast.52340	0	.	103082626	103084322	0	1	1696	0
chr14	103082818	103083923	prostate_normal.29557	0	.	103082818	103083923	0	1	1105	0
chr14	103082945	103084016	brain_AmbionMAQC.22611	0	.	103082945	103084016	0	1	1071	0
chr14	103083442	103084001	CD4_Plagnol_activated.32721	0	.	103083442	103084001	0	1	559	0
chr14	103083620	103083986	A549_Myers.40245	0	.	103083620	103083986	0	1	366	0
chr14	103083690	103084002	CD4_Plagnol_resting.31803	0	.	103083690	103084002	0	1	312	0
chr14	103084124	103085016	CD4_Plagnol_activated.32722	0	.	103084124	103085016	0	1	892	0
chr14	103084245	103084683	CD4_Plagnol_resting.31804	0	.	103084245	103084683	0	1	438	0
chr14	103084483	103085125	MCF7_Burge_Thompson.15263	0	.	103084483	103085125	0	1	642	0
chr14	103084638	103086330	prostate_normal.29558	0	.	103084638	103086330	0	1	1692	0
chr14	103084986	103085598	brain_AmbionMAQC.22612	0	.	103084986	103085598	0	1	612	0
chr14	103085093	103086383	H1_polyA+.59556	0	.	103085093	103086383	0	1	1290	0
chr14	103087111	103089656	REMC_MyoepithelialBreast.49036	0	.	103087111	103089656	0	1	2545	0
chr14	103087177	103089598	prostate_carcinoma.50894	0	.	103087177	103089598	0	1	2421	0
chr14	103087250	103088188	A549_Myers.40247	0	.	103087250	103088188	0	1	938	0
chr14	103087632	103088373	prostate_normal.29560	0	.	103087632	103088373	0	1	741	0
chr14	103088317	103089224	REMC_BreastStem.26470	0	.	103088317	103089224	0	1	907	0
chr14	103088786	103089164	A549_Myers.40248	0	.	103088786	103089164	0	1	378	0
chr14	103089715	103091394	B_cells_Cheung.102860	0	.	103089715	103091394	0	1	1679	0
chr14	103090885	103091394	CD4_Plagnol_activated.32723	0	.	103090885	103091394	0	1	509	0
chr14	103090921	103091437	REMC_LuminalBreast.52358	0	.	103090921	103091437	0	1	516	0
chr14	103383809	103394139	Rinn_00022360	0	+	103383809	103394139	0	3	24,108,1927	0,6575,8403
chr14	103387630	103409174	prostate_normal.29629	0	+	103387630	103409174	0	4	22,85,853,361	0,11517,20071,21183
chr14	103388534	103389350	HepG2_Caltech_ENCODE.18608	0	.	103388534	103389350	0	1	816	0
chr14	103389779	103399924	HepG2_Caltech_ENCODE.18613	0	-	103389779	103399924	0	2	3041,315	0,9830
chr14	103389862	103393882	HepG2_Caltech_ENCODE.18611	0	.	103389862	103393882	0	1	4020	0
chr14	103390360	103394139	HIT000014593	0	+	103390360	103394139	0	2	132,1926	0,1853
chr14	103390388	103392601	HIT000340335	0	+	103390388	103392601	0	2	104,388	0,1825
chr14	103391145	103392062	prostate_normal.29626	0	.	103391145	103392062	0	1	917	0
chr14	103392263	103393110	REMC_LuminalBreast.52389	0	.	103392263	103393110	0	1	847	0
chr14	103392276	103393237	BT474_Burge_Thompson.16863	0	.	103392276	103393237	0	1	961	0
chr14	103394474	103394924	A549_Myers.40279	0	.	103394474	103394924	0	1	450	0
chr14	103395354	103396859	HepG2_Caltech_ENCODE.18615	0	.	103395354	103396859	0	1	1505	0
chr14	103395386	103396824	prostate_carcinoma.51255	0	.	103395386	103396824	0	1	1438	0
chr14	103395492	103396654	prostate_normal.29633	0	.	103395492	103396654	0	1	1162	0
chr14	103401999	103405227	HepG2_Caltech_ENCODE.18617	0	.	103401999	103405227	0	1	3228	0
chr14	103402085	103402549	prostate_normal.29637	0	.	103402085	103402549	0	1	464	0
chr14	103402171	103402612	B_Cells_Pritchard.1788217	0	+	103402171	103402612	0	1	441	0
chr14	103402171	103413161	B_Cells_Pritchard.1788215	0	-	103402171	103413161	0	2	476,134	0,10856
chr14	103402873	103405095	prostate_carcinoma.51249	0	.	103402873	103405095	0	1	2222	0
chr14	103403027	103405165	prostate_normal.29638	0	.	103403027	103405165	0	1	2138	0
chr14	103403588	103403897	A549_Myers.40280	0	.	103403588	103403897	0	1	309	0
chr14	103403593	103404367	BT474_Burge_Thompson.16867	0	.	103403593	103404367	0	1	774	0
chr14	103405441	103407939	HepG2_Caltech_ENCODE.18618	0	.	103405441	103407939	0	1	2498	0
chr14	103405527	103405892	B_Cells_Pritchard.1788231	0	+	103405527	103405892	0	1	365	0
chr14	103406377	103406766	A549_Myers.40282	0	.	103406377	103406766	0	1	389	0
chr14	103406459	103406831	prostate_carcinoma.51260	0	.	103406459	103406831	0	1	372	0
chr14	103407851	103408699	A549_Myers.40283	0	.	103407851	103408699	0	1	848	0
chr14	103407957	103416470	B_Cells_Pritchard.1788239	0	+	103407957	103416470	0	4	1226,464,404,977	0,2673,5324,7536
chr14	103408186	103416471	B_cells_Cheung.102987	0	+	103408186	103416471	0	5	534,461,868,369,978	0,2447,2908,5130,7307
chr14	103408186	103416549	H1_polyA+.59586	0	+	103408186	103416549	0	4	1365,384,260,1056	0,1466,5239,7307
chr14	103408186	103410117	B_cells_Cheung.102988	0	.	103408186	103410117	0	1	1931	0
chr14	103408197	103416470	B_Cells_Pritchard.1788241	0	-	103408197	103416470	0	6	288,475,291,61,992,1072	0,360,5200,5728,6089,7201
chr14	103408197	103409812	REMC_LuminalBreast.52390	0	.	103408197	103409812	0	1	1615	0
chr14	103408197	103409017	liver_polyA+.70520	0	.	103408197	103409017	0	1	820	0
chr14	103408372	103409447	HepG2_Caltech_ENCODE.18619	0	.	103408372	103409447	0	1	1075	0
chr14	103408549	103433361	pHIT000087686	0	-	103408549	103433361	0	5	179,113,77,83,31	0,6884,15863,16905,24781
chr14	103408549	103433361	pHIT000024596	0	-	103408549	103433361	0	5	179,119,77,83,31	0,13790,15863,16905,24781
chr14	103408549	103424489	pHIT000113845	0	-	103408549	103424489	0	3	179,113,77	0,6884,15863
chr14	103408554	103413666	prostate_normal.29640	0	+	103408554	103413666	0	2	166,182	0,4930
chr14	103410636	103411485	HepG2_Caltech_ENCODE.18620	0	.	103410636	103411485	0	1	849	0
chr14	103410649	103411648	prostate_normal.29642	0	.	103410649	103411648	0	1	999	0
chr14	103410657	103411546	H1_polyA+.59587	0	.	103410657	103411546	0	1	889	0
chr14	103411180	103411758	BT474_Burge_Thompson.16869	0	.	103411180	103411758	0	1	578	0
chr14	103414616	103423169	prostate_carcinoma.51264	0	-	103414616	103423169	0	2	422,373	0,8180
chr14	103415580	103415912	NEC_from_H9.38572	0	.	103415580	103415912	0	1	332	0
chr14	103416770	103417308	A549_Myers.40286	0	.	103416770	103417308	0	1	538	0
chr14	103417372	103417789	A549_Myers.40287	0	.	103417372	103417789	0	1	417	0
chr14	103418431	103419658	HepG2_Caltech_ENCODE.18623	0	.	103418431	103419658	0	1	1227	0
chr14	103418715	103419605	CD4_Plagnol_resting.31854	0	.	103418715	103419605	0	1	890	0
chr14	103418716	103419115	A549_Myers.40288	0	.	103418716	103419115	0	1	399	0
chr14	103419299	103419641	A549_Myers.40289	0	.	103419299	103419641	0	1	342	0
chr14	103420966	103421969	HepG2_Caltech_ENCODE.18624	0	.	103420966	103421969	0	1	1003	0
chr14	103421293	103421957	prostate_carcinoma.51265	0	.	103421293	103421957	0	1	664	0
chr14	103425361	103425933	A549_Myers.40290	0	.	103425361	103425933	0	1	572	0
chr14	103425670	103426064	BT474_Burge_Thompson.16871	0	.	103425670	103426064	0	1	394	0
chr14	103427100	103427450	A549_Myers.40291	0	.	103427100	103427450	0	1	350	0
chr14	103430162	103430764	B_Cells_Pritchard.1790473	0	-	103430162	103430764	0	1	602	0
chr14	103430186	103430859	MCF7_Burge_Thompson.15289	0	.	103430186	103430859	0	1	673	0
chr14	103432414	103433272	B_Cells_Pritchard.1790483	0	-	103432414	103433272	0	1	858	0
chr14	103432498	103432872	prostate_carcinoma.51267	0	.	103432498	103432872	0	1	374	0
chr14	103433423	103435567	prostate_carcinoma.51269	0	.	103433423	103435567	0	1	2144	0
chr14	103435848	103436450	prostate_carcinoma.51270	0	.	103435848	103436450	0	1	602	0
chr14	103435898	103436535	BT474_Burge_Thompson.16873	0	.	103435898	103436535	0	1	637	0
chr14	103437006	103437372	B_Cells_Pritchard.1790503	0	-	103437006	103437372	0	1	366	0
chr14	103445601	103446256	CD4_Plagnol_activated.32779	0	.	103445601	103446256	0	1	655	0
chr14	103445644	103446437	CD4_Plagnol_resting.31858	0	.	103445644	103446437	0	1	793	0
chr14	103650148	103651598	H9_polyA+.23128	0	.	103650148	103651598	0	1	1450	0
chr14	103651830	103652986	prostate_carcinoma.50748	0	.	103651830	103652986	0	1	1156	0
chr14	103652753	103653483	A549_Myers.40321	0	.	103652753	103653483	0	1	730	0
chr14	103653616	103653935	T47D_Burge_Thompson.14611	0	.	103653616	103653935	0	1	319	0
chr14	103653782	103654638	MIP101.35400	0	.	103653782	103654638	0	1	856	0
chr14	103653973	103655057	HME_Burge.20293	0	.	103653973	103655057	0	1	1084	0
chr14	103653987	103654990	BT20_Thompson.10898	0	.	103653987	103654990	0	1	1003	0
chr14	103654026	103655047	T47D_Burge_Thompson.14612	0	.	103654026	103655047	0	1	1021	0
chr14	103654394	103655009	prostate_normal.29602	0	.	103654394	103655009	0	1	615	0
chr14	103654511	103654886	liver_polyA+.70568	0	.	103654511	103654886	0	1	375	0
chr14	103655837	103656270	B_Cells_Pritchard.1789093	0	.	103655837	103656270	0	1	433	0
chr14	103671028	103673313	H9_polyA+.23129	0	-	103671028	103673313	0	2	234,357	0,1928
chr14	103672130	103673293	A549_Myers.40328	0	.	103672130	103673293	0	1	1163	0
chr14	103672679	103673323	MCF7_Burge_Thompson.15294	0	.	103672679	103673323	0	1	644	0
chr14	103672857	103673446	ZR751_Thompson.12264	0	.	103672857	103673446	0	1	589	0
chr14	103720511	103720816	A549_Myers.40348	0	.	103720511	103720816	0	1	305	0
chr14	103725668	103725984	A549_Myers.40350	0	.	103725668	103725984	0	1	316	0
chr14	103741966	103745867	Rinn_00022643	0	+	103741966	103745867	0	3	51,402,1761	0,314,2140
chr14	103742061	103742583	A549_Myers.40355	0	.	103742061	103742583	0	1	522	0
chr14	103767299	103768785	melanoma_Garraway_short_term_cultures.34420	0	.	103767299	103768785	0	1	1486	0
chr14	103768024	103768846	prostate_carcinoma.50754	0	.	103768024	103768846	0	1	822	0
chr14	103772845	103773717	melanoma_Garraway_short_term_cultures.34421	0	.	103772845	103773717	0	1	872	0
chr14	103776117	103776746	prostate_carcinoma.50755	0	.	103776117	103776746	0	1	629	0
chr14	103782891	103783302	A549_Myers.40360	0	.	103782891	103783302	0	1	411	0
chr14	103789239	103789727	A549_Myers.40361	0	.	103789239	103789727	0	1	488	0
chr14	103798963	103799340	A549_Myers.40362	0	.	103798963	103799340	0	1	377	0
chr14	103802165	103830983	pHIT000113848	0	-	103802165	103830983	0	2	142,335	0,28483
chr14	103802991	103803725	melanoma_Garraway_short_term_cultures.34428	0	.	103802991	103803725	0	1	734	0
chr14	103814951	103816403	melanoma_Garraway_short_term_cultures.34429	0	.	103814951	103816403	0	1	1452	0
chr14	103815304	103816092	HeLa_polyA+_Chen.18374	0	.	103815304	103816092	0	1	788	0
chr14	103815685	103816383	prostate_carcinoma.50757	0	.	103815685	103816383	0	1	698	0
chr14	103823003	103824164	prostate_carcinoma.50758	0	.	103823003	103824164	0	1	1161	0
chr14	103823906	103824426	prostate_normal.29607	0	.	103823906	103824426	0	1	520	0
chr14	103824235	103825350	prostate_carcinoma.50759	0	.	103824235	103825350	0	1	1115	0
chr14	103826558	103827717	prostate_carcinoma.50761	0	.	103826558	103827717	0	1	1159	0
chr14	103826709	103827205	A549_Myers.40367	0	.	103826709	103827205	0	1	496	0
chr14	103826750	103827478	melanoma_Garraway_short_term_cultures.34430	0	.	103826750	103827478	0	1	728	0
chr14	103829636	103830074	A549_Myers.40369	0	.	103829636	103830074	0	1	438	0
chr14	103831330	103837258	HeLa_polyA+_Chen.18380	0	+	103831330	103837258	0	2	390,5278	0,650
chr14	103837330	103838308	HeLa_polyA+_Chen.18381	0	.	103837330	103838308	0	1	978	0
chr14	103838359	103842332	HeLa_polyA+_Chen.18375	0	.	103838359	103842332	0	1	3973	0
chr14	103839993	103840644	HeLa_polyA-_Chen.9867	0	.	103839993	103840644	0	1	651	0
chr14	103858689	103859001	A549_Myers.40373	0	.	103858689	103859001	0	1	312	0
chr14	103880627	103880963	A549_Myers.40375	0	.	103880627	103880963	0	1	336	0
chr14	103893174	103896277	HIT000045964	0	+	103893174	103896277	0	1	3103	0
chr14	103905505	103905838	A549_Myers.40377	0	.	103905505	103905838	0	1	333	0
chr14	103926081	103926541	A549_Myers.40378	0	.	103926081	103926541	0	1	460	0
chr14	103927562	103928104	CD4_Snyder.40605	0	.	103927562	103928104	0	1	542	0
chr14	103927825	103928229	A549_Myers.40379	0	.	103927825	103928229	0	1	404	0
chr14	103931161	103931539	CD4_Snyder.40606	0	.	103931161	103931539	0	1	378	0
chr14	103931979	103932365	A549_Myers.40381	0	.	103931979	103932365	0	1	386	0
chr14	103940773	103941207	A549_Myers.40382	0	.	103940773	103941207	0	1	434	0
chr14	103973309	103973797	A549_Myers.40385	0	.	103973309	103973797	0	1	488	0
chr14	103980853	103981204	A549_Myers.40388	0	.	103980853	103981204	0	1	351	0
chr14	103998993	103999707	A549_Myers.40390	0	.	103998993	103999707	0	1	714	0
chr14	104008471	104010115	brain_AmbionMAQC.22313	0	.	104008471	104010115	0	1	1644	0
chr14	104009111	104009933	B_Cells_Pritchard.1789863	0	.	104009111	104009933	0	1	822	0
chr14	104173450	104173853	B_Cells_Pritchard.1790347	0	.	104173450	104173853	0	1	403	0
chr14	104177373	104178156	A549_Myers.40416	0	.	104177373	104178156	0	1	783	0
chr14	104187070	104190090	brain_AmbionMAQC.22322	0	.	104187070	104190090	0	1	3020	0
chr14	104187353	104187920	A549_Myers.40417	0	.	104187353	104187920	0	1	567	0
chr14	104187379	104187816	B_cells_Cheung.103001	0	.	104187379	104187816	0	1	437	0
chr14	104187389	104198410	B_Cells_Pritchard.1790407	0	-	104187389	104198410	0	5	1512,116,658,1731,3045	0,3648,5247,5977,7976
chr14	104188122	104191131	A549_Myers.40418	0	+	104188122	104191131	0	2	404,55	0,2954
chr14	104189021	104190747	B_Cells_Pritchard.1790411	0	-	104189021	104190747	0	1	1726	0
chr14	104189021	104190747	B_Cells_Pritchard.1790409	0	+	104189021	104190747	0	2	1003,643	0,1083
chr14	104189225	104189653	A549_Myers.40419	0	.	104189225	104189653	0	1	428	0
chr14	104191037	104198410	B_Cells_Pritchard.1790405	0	+	104191037	104198410	0	3	960,916,2058	0,4328,5315
chr14	104191483	104191990	B_cells_Cheung.103004	0	.	104191483	104191990	0	1	507	0
chr14	104192867	104193253	B_cells_Cheung.103005	0	.	104192867	104193253	0	1	386	0
chr14	104193421	104193797	A549_Myers.40420	0	.	104193421	104193797	0	1	376	0
chr14	104195211	104196151	B_cells_Cheung.103008	0	.	104195211	104196151	0	1	940	0
chr14	104196360	104198442	B_cells_Cheung.103010	0	.	104196360	104198442	0	1	2082	0
chr14	104203229	104203873	A549_Myers.40423	0	.	104203229	104203873	0	1	644	0
chr14	104209613	104210037	melanoma_Garraway_short_term_cultures.34431	0	.	104209613	104210037	0	1	424	0
chr14	104212697	104214139	REMC_MyoepithelialBreast.49146	0	.	104212697	104214139	0	1	1442	0
chr14	104212844	104213887	H1_polyA+.59613	0	.	104212844	104213887	0	1	1043	0
chr14	104214396	104216000	A549_Myers.40426	0	.	104214396	104216000	0	1	1604	0
chr14	104214584	104215526	B_Cells_Pritchard.1790515	0	.	104214584	104215526	0	1	942	0
chr14	104215647	104216789	B_Cells_Pritchard.1790517	0	.	104215647	104216789	0	1	1142	0
chr14	104216056	104217114	A549_Myers.40427	0	.	104216056	104217114	0	1	1058	0
chr14	104217488	104219512	A549_Myers.40428	0	.	104217488	104219512	0	1	2024	0
chr14	104218118	104219160	HeLa_polyA-_Chen.9868	0	.	104218118	104219160	0	1	1042	0
chr14	104218330	104219012	MeWo_Garraway.18228	0	.	104218330	104219012	0	1	682	0
chr14	104218352	104219230	BT474_Burge_Thompson.16949	0	.	104218352	104219230	0	1	878	0
chr14	104218712	104219436	B_Cells_Pritchard.1790535	0	.	104218712	104219436	0	1	724	0
chr14	104219627	104220236	B_Cells_Pritchard.1790537	0	.	104219627	104220236	0	1	609	0
chr14	104219767	104220170	A549_Myers.40430	0	.	104219767	104220170	0	1	403	0
chr14	104219876	104220668	BT474_Burge_Thompson.16950	0	.	104219876	104220668	0	1	792	0
chr14	104222644	104222951	A549_Myers.40434	0	.	104222644	104222951	0	1	307	0
chr14	104224606	104225449	B_Cells_Pritchard.1790555	0	.	104224606	104225449	0	1	843	0
chr14	104258235	104258604	REMC_MyoepithelialBreast.49169	0	.	104258235	104258604	0	1	369	0
chr14	104258741	104260301	REMC_LuminalBreast.52402	0	.	104258741	104260301	0	1	1560	0
chr14	104258751	104260253	REMC_MyoepithelialBreast.49170	0	.	104258751	104260253	0	1	1502	0
chr14	104258762	104260272	HeLa_polyA+_Chen.18385	0	.	104258762	104260272	0	1	1510	0
chr14	104258762	104259918	REMC_BreastStem.26582	0	.	104258762	104259918	0	1	1156	0
chr14	104258771	104259812	H1_polyA+.59621	0	.	104258771	104259812	0	1	1041	0
chr14	104258776	104260422	B_Cells_Pritchard.1790681	0	.	104258776	104260422	0	1	1646	0
chr14	104258784	104259908	BT474_Burge_Thompson.16954	0	.	104258784	104259908	0	1	1124	0
chr14	104258791	104259904	B_cells_Cheung.103014	0	.	104258791	104259904	0	1	1113	0
chr14	104258796	104260029	MCF10A_Thompson.11071	0	.	104258796	104260029	0	1	1233	0
chr14	104258796	104259882	MDAMB231_Thompson.11414	0	.	104258796	104259882	0	1	1086	0
chr14	104258796	104259904	BT20_Thompson.10905	0	.	104258796	104259904	0	1	1108	0
chr14	104258796	104259567	brain_AmbionMAQC.22324	0	.	104258796	104259567	0	1	771	0
chr14	104258796	104259845	MCF7_Burge_Thompson.15299	0	.	104258796	104259845	0	1	1049	0
chr14	104258800	104259898	CD4_Plagnol_activated.32808	0	.	104258800	104259898	0	1	1098	0
chr14	104258801	104259990	liver_polyA+.70582	0	.	104258801	104259990	0	1	1189	0
chr14	104258804	104259942	MeWo_Garraway.18275	0	.	104258804	104259942	0	1	1138	0
chr14	104258804	104259908	MDAMB468_Thompson.12439	0	.	104258804	104259908	0	1	1104	0
chr14	104258806	104259881	ZR751_Thompson.12296	0	.	104258806	104259881	0	1	1075	0
chr14	104258807	104259913	melanoma_Garraway_short_term_cultures.34435	0	.	104258807	104259913	0	1	1106	0
chr14	104259164	104259900	CD4_Plagnol_resting.31867	0	.	104259164	104259900	0	1	736	0
chr14	104298049	104298593	melanoma_Garraway_short_term_cultures.34442	0	.	104298049	104298593	0	1	544	0
chr14	104299445	104300134	H1_polyA+.59662	0	.	104299445	104300134	0	1	689	0
chr14	104299448	104300041	MIP101.35436	0	.	104299448	104300041	0	1	593	0
chr14	104299452	104300120	CD4_Plagnol_resting.31928	0	.	104299452	104300120	0	1	668	0
chr14	104299592	104300125	HepG2_Caltech_ENCODE.19401	0	.	104299592	104300125	0	1	533	0
chr14	104302616	104303898	B_cells_Cheung.103106	0	.	104302616	104303898	0	1	1282	0
chr14	104302671	104304082	REMC_MyoepithelialBreast.49188	0	.	104302671	104304082	0	1	1411	0
chr14	104334311	104334859	A549_Myers.40513	0	.	104334311	104334859	0	1	548	0
chr14	104334390	104335626	REMC_BreastStem.26585	0	.	104334390	104335626	0	1	1236	0
chr14	104335037	104335779	A549_Myers.40514	0	.	104335037	104335779	0	1	742	0
chr14	104343157	104353756	prostate_normal.29938	0	-	104343157	104353756	0	2	1020,346	0,10253
chr14	104343184	104344250	BT474_Burge_Thompson.16901	0	.	104343184	104344250	0	1	1066	0
chr14	104343262	104343757	A549_Myers.40516	0	.	104343262	104343757	0	1	495	0
chr14	104343272	104344074	H1_polyA+.59616	0	.	104343272	104344074	0	1	802	0
chr14	104343303	104344128	melanoma_Garraway_short_term_cultures.34447	0	.	104343303	104344128	0	1	825	0
chr14	104343308	104343938	REMC_BreastStem.26589	0	.	104343308	104343938	0	1	630	0
chr14	104343477	104345013	REMC_LuminalBreast.52421	0	.	104343477	104345013	0	1	1536	0
chr14	104343745	104344248	T47D_Burge_Thompson.14623	0	.	104343745	104344248	0	1	503	0
chr14	104344472	104344916	prostate_normal.29941	0	.	104344472	104344916	0	1	444	0
chr14	104344539	104344962	prostate_carcinoma.50782	0	.	104344539	104344962	0	1	423	0
chr14	104344651	104344967	A549_Myers.40517	0	.	104344651	104344967	0	1	316	0
chr14	104345850	104346361	MCF7_Burge_Thompson.15319	0	.	104345850	104346361	0	1	511	0
chr14	104345912	104349620	REMC_LuminalBreast.52422	0	.	104345912	104349620	0	1	3708	0
chr14	104347354	104348823	MCF7_Burge_Thompson.15320	0	.	104347354	104348823	0	1	1469	0
chr14	104347576	104348091	prostate_carcinoma.50783	0	.	104347576	104348091	0	1	515	0
chr14	104347726	104348133	B_cells_Cheung.103027	0	.	104347726	104348133	0	1	407	0
chr14	104349239	104349836	MCF7_Burge_Thompson.15321	0	.	104349239	104349836	0	1	597	0
chr14	104350613	104351606	MCF7_Burge_Thompson.15322	0	.	104350613	104351606	0	1	993	0
chr14	104350616	104352187	REMC_LuminalBreast.52424	0	.	104350616	104352187	0	1	1571	0
chr14	104350736	104351171	B_cells_Cheung.103028	0	.	104350736	104351171	0	1	435	0
chr14	104352640	104353469	B_cells_Cheung.103031	0	.	104352640	104353469	0	1	829	0
chr14	104352722	104354484	REMC_BreastStem.26590	0	.	104352722	104354484	0	1	1762	0
chr14	104352776	104367482	MIP101.35440	0	-	104352776	104367482	0	2	626,25	0,14681
chr14	104352777	104353401	REMC_LuminalBreast.52426	0	.	104352777	104353401	0	1	624	0
chr14	104352791	104353418	BT474_Burge_Thompson.16902	0	.	104352791	104353418	0	1	627	0
chr14	104352867	104353167	A549_Myers.40519	0	.	104352867	104353167	0	1	300	0
chr14	104352874	104353363	MB435_Burge.21004	0	.	104352874	104353363	0	1	489	0
chr14	104352874	104353403	CD4_Plagnol_activated.32837	0	.	104352874	104353403	0	1	529	0
chr14	104352876	104353356	BT20_Thompson.10910	0	.	104352876	104353356	0	1	480	0
chr14	104352876	104353420	CD4_Plagnol_resting.31886	0	.	104352876	104353420	0	1	544	0
chr14	104352876	104354501	prostate_carcinoma.50784	0	.	104352876	104354501	0	1	1625	0
chr14	104352877	104353401	MCF7_Burge_Thompson.15323	0	.	104352877	104353401	0	1	524	0
chr14	104352880	104354504	prostate_normal.29939	0	.	104352880	104354504	0	1	1624	0
chr14	104352881	104360806	H9_polyA+.23152	0	-	104352881	104360806	0	2	199,976	0,6949
chr14	104352881	104353335	H9_polyA+.23153	0	.	104352881	104353335	0	1	454	0
chr14	104352881	104353369	brain_AmbionMAQC.22333	0	.	104352881	104353369	0	1	488	0
chr14	104352889	104353370	HeLa_polyA+_Chen.18395	0	.	104352889	104353370	0	1	481	0
chr14	104352896	104353407	T47D_Burge_Thompson.14624	0	.	104352896	104353407	0	1	511	0
chr14	104352902	104353358	ZR751_Thompson.12276	0	.	104352902	104353358	0	1	456	0
chr14	104352910	104353434	testes_Burge.26635	0	.	104352910	104353434	0	1	524	0
chr14	104352915	104353385	colon_Burge.19097	0	.	104352915	104353385	0	1	470	0
chr14	104353594	104356253	REMC_MyoepithelialBreast.49177	0	.	104353594	104356253	0	1	2659	0
chr14	104353751	104354284	melanoma_Garraway_short_term_cultures.34448	0	.	104353751	104354284	0	1	533	0
chr14	104354728	104357743	H1_polyA+.59618	0	.	104354728	104357743	0	1	3015	0
chr14	104354729	104357422	B_cells_Cheung.103033	0	.	104354729	104357422	0	1	2693	0
chr14	104354733	104357173	REMC_LuminalBreast.52428	0	.	104354733	104357173	0	1	2440	0
chr14	104354740	104356385	prostate_carcinoma.50785	0	.	104354740	104356385	0	1	1645	0
chr14	104354740	104362265	prostate_carcinoma.50786	0	+	104354740	104362265	0	2	1503,17	0,7508
chr14	104355169	104356204	melanoma_Garraway_short_term_cultures.34449	0	.	104355169	104356204	0	1	1035	0
chr14	104355222	104356223	K562.22967	0	.	104355222	104356223	0	1	1001	0
chr14	104355223	104356122	prostate_normal.29942	0	.	104355223	104356122	0	1	899	0
chr14	104357671	104358363	B_cells_Cheung.103034	0	.	104357671	104358363	0	1	692	0
chr14	104358280	104360884	CD4_Plagnol_resting.31888	0	.	104358280	104360884	0	1	2604	0
chr14	104358378	104360854	melanoma_Garraway_short_term_cultures.34450	0	.	104358378	104360854	0	1	2476	0
chr14	104358431	104360885	BT20_Thompson.10912	0	.	104358431	104360885	0	1	2454	0
chr14	104358431	104360905	B_cells_Cheung.103035	0	.	104358431	104360905	0	1	2474	0
chr14	104358432	104360900	BT474_Burge_Thompson.16904	0	.	104358432	104360900	0	1	2468	0
chr14	104358433	104360498	K562.22968	0	.	104358433	104360498	0	1	2065	0
chr14	104358443	104360790	REMC_MyoepithelialBreast.49178	0	.	104358443	104360790	0	1	2347	0
chr14	104358452	104359024	HeLa_polyA+_Chen.18396	0	.	104358452	104359024	0	1	572	0
chr14	104358464	104359276	MDAMB231_Thompson.11418	0	.	104358464	104359276	0	1	812	0
chr14	104358532	104359454	ZR751_Thompson.12277	0	.	104358532	104359454	0	1	922	0
chr14	104358567	104359791	T47D_Burge_Thompson.14629	0	.	104358567	104359791	0	1	1224	0
chr14	104358571	104359555	A549_Myers.40520	0	.	104358571	104359555	0	1	984	0
chr14	104358582	104361100	NR_024396	0	+	104358582	104361100	0	1	2518	0
chr14	104358809	104361340	REMC_LuminalBreast.52429	0	.	104358809	104361340	0	1	2531	0
chr14	104359075	104360855	HeLa_polyA+_Chen.18397	0	.	104359075	104360855	0	1	1780	0
chr14	104359240	104360087	MCF10A_Thompson.11052	0	.	104359240	104360087	0	1	847	0
chr14	104359318	104360911	HIT000424976	0	+	104359318	104360911	0	1	1593	0
chr14	104359320	104360874	HIT000052485	0	+	104359320	104360874	0	1	1554	0
chr14	104359739	104360886	MDAMB231_Thompson.11419	0	.	104359739	104360886	0	1	1147	0
chr14	104359870	104360856	CD4_Plagnol_activated.32840	0	.	104359870	104360856	0	1	986	0
chr14	104359991	104360562	T47D_Burge_Thompson.14630	0	.	104359991	104360562	0	1	571	0
chr14	104360104	104360900	ZR751_Thompson.12279	0	.	104360104	104360900	0	1	796	0
chr14	104360242	104360815	brain_AmbionMAQC.22334	0	.	104360242	104360815	0	1	573	0
chr14	104361006	104361422	B_cells_Cheung.103036	0	.	104361006	104361422	0	1	416	0
chr14	104361021	104362752	BT20_Thompson.10913	0	.	104361021	104362752	0	1	1731	0
chr14	104361021	104361375	BT474_Burge_Thompson.16905	0	.	104361021	104361375	0	1	354	0
chr14	104361497	104362847	BT474_Burge_Thompson.16906	0	.	104361497	104362847	0	1	1350	0
chr14	104361503	104362857	B_cells_Cheung.103037	0	.	104361503	104362857	0	1	1354	0
chr14	104361548	104362827	ZR751_Thompson.12278	0	.	104361548	104362827	0	1	1279	0
chr14	104361559	104363813	H1_polyA+.59633	0	.	104361559	104363813	0	1	2254	0
chr14	104361648	104362602	melanoma_Garraway_short_term_cultures.34451	0	.	104361648	104362602	0	1	954	0
chr14	104361659	104362705	CD4_Plagnol_resting.31890	0	.	104361659	104362705	0	1	1046	0
chr14	104361704	104362815	CD4_Plagnol_activated.32842	0	.	104361704	104362815	0	1	1111	0
chr14	104361721	104362749	HeLa_polyA+_Chen.18398	0	.	104361721	104362749	0	1	1028	0
chr14	104361756	104363408	REMC_LuminalBreast.52430	0	.	104361756	104363408	0	1	1652	0
chr14	104361815	104362573	MDAMB231_Thompson.11420	0	.	104361815	104362573	0	1	758	0
chr14	104361821	104362465	brain_AmbionMAQC.22335	0	.	104361821	104362465	0	1	644	0
chr14	104361948	104362264	liver_polyA+.70595	0	.	104361948	104362264	0	1	316	0
chr14	104361964	104362586	colon_Raymond.65981	0	.	104361964	104362586	0	1	622	0
chr14	104361978	104362930	REMC_MyoepithelialBreast.49179	0	.	104361978	104362930	0	1	952	0
chr14	104363011	104365822	B_cells_Cheung.103038	0	.	104363011	104365822	0	1	2811	0
chr14	104363082	104365687	BT474_Burge_Thompson.16907	0	.	104363082	104365687	0	1	2605	0
chr14	104364370	104365396	BT20_Thompson.10914	0	.	104364370	104365396	0	1	1026	0
chr14	104364518	104364988	T47D_Burge_Thompson.14633	0	.	104364518	104364988	0	1	470	0
chr14	104364602	104365163	REMC_MyoepithelialBreast.49180	0	.	104364602	104365163	0	1	561	0
chr14	104365057	104365484	T47D_Burge_Thompson.14636	0	.	104365057	104365484	0	1	427	0
chr14	104379432	104380701	REMC_LuminalBreast.52438	0	.	104379432	104380701	0	1	1269	0
chr14	104379487	104380194	H1_polyA+.59641	0	.	104379487	104380194	0	1	707	0
chr14	104380009	104381017	B_cells_Cheung.103044	0	.	104380009	104381017	0	1	1008	0
chr14	104380044	104383311	HIT000047394	0	+	104380044	104383311	0	1	3267	0
chr14	104380138	104380647	REMC_MyoepithelialBreast.49183	0	.	104380138	104380647	0	1	509	0
chr14	104380338	104380774	A549_Myers.40457	0	.	104380338	104380774	0	1	436	0
chr14	104380866	104384814	REMC_LuminalBreast.52439	0	.	104380866	104384814	0	1	3948	0
chr14	104382280	104382820	B_cells_Cheung.103045	0	.	104382280	104382820	0	1	540	0
chr14	104388997	104389361	H9_polyA+.23164	0	.	104388997	104389361	0	1	364	0
chr14	104389019	104391709	REMC_LuminalBreast.52443	0	.	104389019	104391709	0	1	2690	0
chr14	104389028	104389549	REMC_MyoepithelialBreast.49189	0	.	104389028	104389549	0	1	521	0
chr14	104389065	104389742	MCF7_Burge_Thompson.15338	0	.	104389065	104389742	0	1	677	0
chr14	104389577	104390000	HeLa_polyA+_Chen.18403	0	.	104389577	104390000	0	1	423	0
chr14	104389623	104390043	T47D_Burge_Thompson.14655	0	.	104389623	104390043	0	1	420	0
chr14	104389693	104390046	H9_polyA+.23165	0	.	104389693	104390046	0	1	353	0
chr14	104392135	104392569	prostate_carcinoma.50797	0	.	104392135	104392569	0	1	434	0
chr14	104392841	104396641	REMC_LuminalBreast.52502	0	.	104392841	104396641	0	1	3800	0
chr14	104392858	104394338	REMC_MyoepithelialBreast.49191	0	.	104392858	104394338	0	1	1480	0
chr14	104392889	104394365	MCF7_Burge_Thompson.15314	0	.	104392889	104394365	0	1	1476	0
chr14	104392897	104395170	H9_polyA+.23166	0	.	104392897	104395170	0	1	2273	0
chr14	104392920	104393771	MeWo_Garraway.18264	0	.	104392920	104393771	0	1	851	0
chr14	104392985	104394135	HeLa_polyA+_Chen.18405	0	.	104392985	104394135	0	1	1150	0
chr14	104392989	104393912	melanoma_Garraway_short_term_cultures.34457	0	.	104392989	104393912	0	1	923	0
chr14	104393307	104393731	BT474_Burge_Thompson.16946	0	.	104393307	104393731	0	1	424	0
chr14	104393400	104395782	HepG2_Caltech_ENCODE.18645	0	.	104393400	104395782	0	1	2382	0
chr14	104394052	104394974	BT474_Burge_Thompson.16947	0	.	104394052	104394974	0	1	922	0
chr14	104394208	104394953	HeLa_polyA+_Chen.18406	0	.	104394208	104394953	0	1	745	0
chr14	104394309	104395621	prostate_carcinoma.50798	0	-	104394309	104395621	0	2	1002,171	0,1141
chr14	104394451	104395169	REMC_MyoepithelialBreast.49192	0	.	104394451	104395169	0	1	718	0
chr14	104394621	104396181	MIP101.35443	0	-	104394621	104396181	0	2	690,387	0,1173
chr14	104394665	104396592	liver_polyA+.70599	0	-	104394665	104396592	0	3	643,425,130	0,1160,1797
chr14	104394665	104396592	kidney_Gilad.45659	0	-	104394665	104396592	0	4	643,425,11,130	0,1160,1690,1797
chr14	104396225	104396709	HeLa_polyA+_Chen.18407	0	.	104396225	104396709	0	1	484	0
chr14	104396357	104396689	BT20_Thompson.10924	0	.	104396357	104396689	0	1	332	0
chr14	104396378	104396689	brain_AmbionMAQC.22338	0	.	104396378	104396689	0	1	311	0
chr14	104396689	104398065	H9_polyA+.23168	0	.	104396689	104398065	0	1	1376	0
chr14	104396763	104397745	T47D_Burge_Thompson.14658	0	.	104396763	104397745	0	1	982	0
chr14	104396854	104397168	HeLa_polyA+_Chen.18408	0	.	104396854	104397168	0	1	314	0
chr14	104397029	104398303	BT20_Thompson.10926	0	.	104397029	104398303	0	1	1274	0
chr14	104397240	104397965	HeLa_polyA+_Chen.18409	0	.	104397240	104397965	0	1	725	0
chr14	104397268	104397583	brain_AmbionMAQC.22339	0	.	104397268	104397583	0	1	315	0
chr14	104397856	104398264	T47D_Burge_Thompson.14659	0	.	104397856	104398264	0	1	408	0
chr14	104398140	104398730	brain_AmbionMAQC.22340	0	.	104398140	104398730	0	1	590	0
chr14	104398200	104398750	H9_polyA+.23169	0	.	104398200	104398750	0	1	550	0
chr14	104398227	104401163	HeLa_polyA+_Chen.18410	0	.	104398227	104401163	0	1	2936	0
chr14	104398274	104398775	REMC_MyoepithelialBreast.49194	0	.	104398274	104398775	0	1	501	0
chr14	104398357	104398723	kidney_Raymond.55835	0	.	104398357	104398723	0	1	366	0
chr14	104398361	104398733	BT20_Thompson.10925	0	.	104398361	104398733	0	1	372	0
chr14	104398818	104399450	BT20_Thompson.10927	0	.	104398818	104399450	0	1	632	0
chr14	104398827	104399340	colon_Raymond.65982	0	.	104398827	104399340	0	1	513	0
chr14	104398829	104399423	REMC_MyoepithelialBreast.49195	0	.	104398829	104399423	0	1	594	0
chr14	104398832	104399354	kidney_Raymond.55837	0	.	104398832	104399354	0	1	522	0
chr14	104398886	104399259	brain_AmbionMAQC.22341	0	.	104398886	104399259	0	1	373	0
chr14	104399474	104399879	H1_rRNA-depleted_UCSD_REMC.46236	0	.	104399474	104399879	0	1	405	0
chr14	104399529	104401121	BT20_Thompson.10928	0	.	104399529	104401121	0	1	1592	0
chr14	104399531	104401156	REMC_MyoepithelialBreast.49196	0	.	104399531	104401156	0	1	1625	0
chr14	104399580	104400166	brain_AmbionMAQC.22342	0	.	104399580	104400166	0	1	586	0
chr14	104399612	104401418	liver_polyA+.70603	0	.	104399612	104401418	0	1	1806	0
chr14	104399612	104401418	liver_polyA+.70604	0	-	104399612	104401418	0	2	1206,237	0,1569
chr14	104399743	104400046	kidney_Raymond.55838	0	.	104399743	104400046	0	1	303	0
chr14	104399744	104400237	kidney_Gilad.45658	0	.	104399744	104400237	0	1	493	0
chr14	104399749	104400260	ZR751_Thompson.12287	0	.	104399749	104400260	0	1	511	0
chr14	104399772	104400099	A549_Myers.40462	0	.	104399772	104400099	0	1	327	0
chr14	104400361	104401429	ZR751_Thompson.12288	0	.	104400361	104401429	0	1	1068	0
chr14	104435530	104436702	REMC_MyoepithelialBreast.52191	0	.	104435530	104436702	0	1	1172	0
chr14	104435671	104442617	REMC_LuminalBreast.52452	0	.	104435671	104442617	0	1	6946	0
chr14	104436133	104437000	brain_AmbionMAQC.22392	0	.	104436133	104437000	0	1	867	0
chr14	104460082	104460693	B_Cells_Pritchard.1791115	0	.	104460082	104460693	0	1	611	0
chr14	104460107	104460714	brain_AmbionMAQC.22396	0	.	104460107	104460714	0	1	607	0
chr14	104517339	104518883	A549_Myers.40530	0	.	104517339	104518883	0	2	859,550	0,994
chr14	104519062	104521126	A549_Myers.40531	0	.	104519062	104521126	0	1	2064	0
chr14	104521071	104521910	REMC_MyoepithelialBreast.49213	0	.	104521071	104521910	0	1	839	0
chr14	104533912	104534528	prostate_normal.29682	0	.	104533912	104534528	0	1	616	0
chr14	104534012	104534969	K562.22991	0	.	104534012	104534969	0	1	957	0
chr14	104540674	104541993	HeLa_polyA+_Chen.18424	0	.	104540674	104541993	0	1	1319	0
chr14	104541205	104541909	H1_polyA+.59686	0	.	104541205	104541909	0	1	704	0
chr14	104541230	104541903	melanoma_Garraway_short_term_cultures.34477	0	.	104541230	104541903	0	1	673	0
chr14	104541232	104541938	REMC_MyoepithelialBreast.49218	0	.	104541232	104541938	0	1	706	0
chr14	104541244	104541828	MIP101.35410	0	.	104541244	104541828	0	1	584	0
chr14	104541261	104541838	CD4_Plagnol_activated.32849	0	.	104541261	104541838	0	1	577	0
chr14	104541267	104541900	B_cells_Cheung.103075	0	.	104541267	104541900	0	1	633	0
chr14	104541267	104546469	B_Cells_Pritchard.1791325	0	+	104541267	104546469	0	4	613,3506,116,81	0,1321,4984,5121
chr14	104541285	104541893	BT474_Burge_Thompson.16933	0	.	104541285	104541893	0	1	608	0
chr14	104542704	104543482	MCF7_Burge_Thompson.15353	0	.	104542704	104543482	0	1	778	0
chr14	104542754	104543475	MIP101.35411	0	.	104542754	104543475	0	1	721	0
chr14	104542787	104545419	melanoma_Garraway_short_term_cultures.34478	0	.	104542787	104545419	0	1	2632	0
chr14	104542831	104543535	CD4_Plagnol_activated.32850	0	.	104542831	104543535	0	1	704	0
chr14	104542842	104545569	BT20_Thompson.10939	0	.	104542842	104545569	0	1	2727	0
chr14	104542843	104543761	A549_Myers.40542	0	.	104542843	104543761	0	1	918	0
chr14	104542857	104543537	H9_polyA+.23189	0	.	104542857	104543537	0	1	680	0
chr14	104542862	104543702	ZR751_Thompson.12301	0	.	104542862	104543702	0	1	840	0
chr14	104543375	104544365	CD4_Plagnol_resting.31912	0	.	104543375	104544365	0	1	990	0
chr14	104543444	104545098	BT474_Burge_Thompson.16934	0	.	104543444	104545098	0	1	1654	0
chr14	104543533	104544387	prostate_normal.29684	0	.	104543533	104544387	0	1	854	0
chr14	104543577	104544379	brain_AmbionMAQC.22359	0	.	104543577	104544379	0	1	802	0
chr14	104543643	104544935	CD4_Plagnol_activated.32851	0	.	104543643	104544935	0	1	1292	0
chr14	104543808	104544192	H9_polyA+.23190	0	.	104543808	104544192	0	1	384	0
chr14	104544230	104545357	K562.22992	0	.	104544230	104545357	0	1	1127	0
chr14	104544262	104545036	H9_polyA+.23191	0	.	104544262	104545036	0	1	774	0
chr14	104544325	104545064	T47D_Burge_Thompson.14690	0	.	104544325	104545064	0	1	739	0
chr14	104544340	104545341	REMC_BreastStem.26610	0	.	104544340	104545341	0	1	1001	0
chr14	104544502	104545446	brain_AmbionMAQC.22360	0	.	104544502	104545446	0	1	944	0
chr14	104544566	104545943	prostate_normal.29685	0	.	104544566	104545943	0	1	1377	0
chr14	104544578	104545257	CD4_Plagnol_resting.31913	0	.	104544578	104545257	0	1	679	0
chr14	104544673	104545494	ZR751_Thompson.12300	0	.	104544673	104545494	0	1	821	0
chr14	104544701	104545074	H9_polyA-_Chen.7447	0	.	104544701	104545074	0	1	373	0
chr14	104544710	104545571	MCF7_Burge_Thompson.15354	0	.	104544710	104545571	0	1	861	0
chr14	104569825	104573855	REMC_LuminalBreast.52478	0	.	104569825	104573855	0	1	4030	0
chr14	104570168	104572857	BT20_Thompson.10940	0	.	104570168	104572857	0	1	2689	0
chr14	104570564	104572290	T47D_Burge_Thompson.14692	0	.	104570564	104572290	0	1	1726	0
chr14	104570961	104572363	B_cells_Cheung.103095	0	.	104570961	104572363	0	1	1402	0
chr14	104570961	104572873	MCF7_Burge_Thompson.15386	0	.	104570961	104572873	0	1	1912	0
chr14	104570979	104572015	CD4_Plagnol_resting.32232	0	.	104570979	104572015	0	1	1036	0
chr14	104571041	104571703	CD4_Plagnol_activated.32903	0	.	104571041	104571703	0	1	662	0
chr14	104573866	104575866	REMC_LuminalBreast.52479	0	.	104573866	104575866	0	1	2000	0
chr14	104574112	104575068	T47D_Burge_Thompson.14693	0	.	104574112	104575068	0	1	956	0
chr14	104576777	104578465	REMC_LuminalBreast.52481	0	.	104576777	104578465	0	1	1688	0
chr14	104578660	104582691	REMC_LuminalBreast.52482	0	.	104578660	104582691	0	1	4031	0
chr14	104578664	104581627	CD4_Plagnol_activated.32906	0	.	104578664	104581627	0	1	2963	0
chr14	104578679	104581585	MCF7_Burge_Thompson.15388	0	.	104578679	104581585	0	1	2906	0
chr14	104578694	104581632	T47D_Burge_Thompson.14703	0	.	104578694	104581632	0	1	2938	0
chr14	104578765	104581587	BT20_Thompson.10941	0	.	104578765	104581587	0	1	2822	0
chr14	104579229	104579871	melanoma_Garraway_short_term_cultures.34492	0	.	104579229	104579871	0	1	642	0
chr14	104579885	104581153	prostate_carcinoma.50822	0	.	104579885	104581153	0	1	1268	0
chr14	104581727	104582767	CD4_Plagnol_activated.32907	0	.	104581727	104582767	0	1	1040	0
chr14	104581899	104582775	CD4_Plagnol_resting.32236	0	.	104581899	104582775	0	1	876	0
chr14	104582853	104585420	REMC_LuminalBreast.52483	0	.	104582853	104585420	0	1	2567	0
chr14	104582957	104583842	T47D_Burge_Thompson.14701	0	.	104582957	104583842	0	1	885	0
chr14	104582958	104583604	MCF7_Burge_Thompson.15389	0	.	104582958	104583604	0	1	646	0
chr14	104583974	104584824	prostate_carcinoma.50824	0	.	104583974	104584824	0	1	850	0
chr14	104583992	104585777	BT20_Thompson.10942	0	.	104583992	104585777	0	1	1785	0
chr14	104603898	104604350	CD4_Plagnol_resting.32243	0	.	104603898	104604350	0	1	452	0
chr14	104603919	104604621	REMC_LuminalBreast.52492	0	.	104603919	104604621	0	1	702	0
chr14	104604471	104604945	T47D_Burge_Thompson.14717	0	.	104604471	104604945	0	1	474	0
chr14	104604471	104605302	prostate_carcinoma.50832	0	.	104604471	104605302	0	1	831	0
chr14	104605055	104620203	MCF7_Burge_Thompson.15398	0	-	104605055	104620203	0	3	266,82,71	0,14181,15077
chr14	104605467	104623686	CD4_Plagnol_resting.32244	0	+	104605467	104623686	0	2	215,1249	0,16970
chr14	104606112	104607154	REMC_LuminalBreast.52493	0	.	104606112	104607154	0	1	1042	0
chr14	104607879	104612575	MCF7_Burge_Thompson.15399	0	.	104607879	104612575	0	1	4696	0
chr14	104608173	104612555	REMC_LuminalBreast.52495	0	+	104608173	104612555	0	2	2093,332	0,4050
chr14	104608173	104611373	REMC_LuminalBreast.52496	0	.	104608173	104611373	0	1	3200	0
chr14	104608593	104611688	T47D_Burge_Thompson.14718	0	.	104608593	104611688	0	1	3095	0
chr14	104608655	104611458	MCF10A_Thompson.11082	0	.	104608655	104611458	0	1	2803	0
chr14	104608760	104609467	BT20_Thompson.10946	0	.	104608760	104609467	0	1	707	0
chr14	104608797	104610223	CD4_Plagnol_activated.32882	0	.	104608797	104610223	0	1	1426	0
chr14	104609190	104609837	H1_polyA+.59668	0	.	104609190	104609837	0	1	647	0
chr14	104609194	104610023	brain_AmbionMAQC.22365	0	.	104609194	104610023	0	1	829	0
chr14	104609307	104610221	CD4_Plagnol_resting.32246	0	.	104609307	104610221	0	1	914	0
chr14	104609390	104611210	A549_Myers.40570	0	.	104609390	104611210	0	1	1820	0
chr14	104609603	104611546	BT20_Thompson.10947	0	.	104609603	104611546	0	1	1943	0
chr14	104609808	104610666	MDAMB231_Thompson.11446	0	.	104609808	104610666	0	1	858	0
chr14	104610281	104611158	CD4_Plagnol_resting.32247	0	.	104610281	104611158	0	1	877	0
chr14	104611671	104636650	prostate_carcinoma.50836	0	+	104611671	104636650	0	6	13,704,586,7367,229,796	0,5707,6851,12322,21250,24183
chr14	104611796	104612568	T47D_Burge_Thompson.14719	0	.	104611796	104612568	0	1	772	0
chr14	104611931	104612544	brain_AmbionMAQC.22366	0	.	104611931	104612544	0	1	613	0
chr14	104612159	104612515	A549_Myers.40571	0	.	104612159	104612515	0	1	356	0
chr14	104612665	104615955	MCF7_Burge_Thompson.15400	0	.	104612665	104615955	0	1	3290	0
chr14	104612673	104615982	B_cells_Cheung.103108	0	.	104612673	104615982	0	1	3309	0
chr14	104612800	104619573	B_Cells_Pritchard.1791445	0	-	104612800	104619573	0	3	2722,974,364	0,4522,6409
chr14	104612934	104615936	T47D_Burge_Thompson.14720	0	.	104612934	104615936	0	1	3002	0
chr14	104613319	104615428	prostate_carcinoma.50837	0	.	104613319	104615428	0	1	2109	0
chr14	104613465	104613814	A549_Myers.40573	0	.	104613465	104613814	0	1	349	0
chr14	104613885	104625791	A549_Myers.40568	0	+	104613885	104625791	0	4	140,660,2356,1855	0,3537,7336,10051
chr14	104613891	104614293	CD4_Plagnol_resting.32248	0	.	104613891	104614293	0	1	402	0
chr14	104614274	104615027	melanoma_Garraway_short_term_cultures.34497	0	.	104614274	104615027	0	1	753	0
chr14	104614362	104614894	MDAMB231_Thompson.11448	0	.	104614362	104614894	0	1	532	0
chr14	104614413	104615439	MCF10A_Thompson.11083	0	.	104614413	104615439	0	1	1026	0
chr14	104614455	104615444	CD4_Plagnol_resting.32249	0	.	104614455	104615444	0	1	989	0
chr14	104614460	104615615	REMC_LuminalBreast.52497	0	.	104614460	104615615	0	1	1155	0
chr14	104614545	104615459	CD4_Plagnol_activated.32883	0	.	104614545	104615459	0	1	914	0
chr14	104614567	104615434	BT20_Thompson.10949	0	.	104614567	104615434	0	1	867	0
chr14	104614681	104615308	brain_AmbionMAQC.22367	0	.	104614681	104615308	0	1	627	0
chr14	104614898	104615382	A549_Myers.40574	0	.	104614898	104615382	0	1	484	0
chr14	104614953	104615439	MDAMB231_Thompson.11449	0	.	104614953	104615439	0	1	486	0
chr14	104615130	104616007	melanoma_Garraway_short_term_cultures.34498	0	.	104615130	104616007	0	1	877	0
chr14	104617332	104630880	prostate_normal.29691	0	-	104617332	104630880	0	2	62,4836	0,8712
chr14	104617334	104632366	A549_Myers.40569	0	-	104617334	104632366	0	3	60,146,3138	0,4924,11894
chr14	104617409	104623674	prostate_carcinoma.50834	0	-	104617409	104623674	0	5	455,379,127,74,2205	0,1827,2799,3743,4060
chr14	104619807	104620950	B_cells_Cheung.103112	0	.	104619807	104620950	0	1	1143	0
chr14	104619868	104620608	CD4_Plagnol_resting.32254	0	.	104619868	104620608	0	1	740	0
chr14	104619884	104622972	T47D_Burge_Thompson.14716	0	.	104619884	104622972	0	1	3088	0
chr14	104620067	104620526	HME_Burge.20389	0	.	104620067	104620526	0	1	459	0
chr14	104620887	104623661	prostate_normal.29690	0	-	104620887	104623661	0	2	9,2627	0,147
chr14	104621040	104629224	B_cells_Cheung.103113	0	.	104621040	104629224	0	1	8184	0
chr14	104621050	104621584	MCF7_Burge_Thompson.15401	0	.	104621050	104621584	0	1	534	0
chr14	104621083	104623686	CD4_Plagnol_resting.32245	0	.	104621083	104623686	0	1	2603	0
chr14	104621207	104623678	MCF10A_Thompson.11084	0	.	104621207	104623678	0	1	2471	0
chr14	104621218	104621967	MB435_Burge.21041	0	.	104621218	104621967	0	1	749	0
chr14	104621233	104623673	B_Cells_Pritchard.1791459	0	.	104621233	104623673	0	1	2440	0
chr14	104621246	104623676	brain_AmbionMAQC.22369	0	.	104621246	104623676	0	1	2430	0
chr14	104621259	104623246	BT20_Thompson.10954	0	.	104621259	104623246	0	1	1987	0
chr14	104621282	104623662	melanoma_Garraway_short_term_cultures.34502	0	.	104621282	104623662	0	1	2380	0
chr14	104621340	104623617	CD4_Plagnol_activated.32888	0	.	104621340	104623617	0	1	2277	0
chr14	104621529	104623666	MIP101.35421	0	.	104621529	104623666	0	1	2137	0
chr14	104623820	104626072	CD4_Plagnol_resting.31939	0	.	104623820	104626072	0	1	2252	0
chr14	104623835	104628387	B_Cells_Pritchard.1791461	0	.	104623835	104628387	0	1	4552	0
chr14	104623942	104624775	MCF7_Burge_Thompson.15403	0	.	104623942	104624775	0	1	833	0
chr14	104623945	104632317	prostate_carcinoma.50835	0	.	104623945	104632317	0	1	8372	0
chr14	104623950	104632320	prostate_normal.29692	0	+	104623950	104632320	0	2	4572,2997	0,5373
chr14	104623974	104624497	MIP101.35424	0	.	104623974	104624497	0	1	523	0
chr14	104624010	104625307	CD4_Plagnol_activated.32889	0	.	104624010	104625307	0	1	1297	0
chr14	104624016	104624425	brain_AmbionMAQC.22370	0	.	104624016	104624425	0	1	409	0
chr14	104624020	104624748	melanoma_Garraway_short_term_cultures.34503	0	.	104624020	104624748	0	1	728	0
chr14	104624047	104624902	MB435_Burge.21044	0	.	104624047	104624902	0	1	855	0
chr14	104624124	104624586	BT20_Thompson.10956	0	.	104624124	104624586	0	1	462	0
chr14	104624448	104625040	T47D_Burge_Thompson.14722	0	.	104624448	104625040	0	1	592	0
chr14	104624466	104624942	HME_Burge.20391	0	.	104624466	104624942	0	1	476	0
chr14	104624497	104625721	MIP101.35425	0	.	104624497	104625721	0	1	1224	0
chr14	104625357	104626588	CD4_Plagnol_activated.32890	0	.	104625357	104626588	0	1	1231	0
chr14	104625721	104627223	MIP101.35422	0	.	104625721	104627223	0	1	1502	0
chr14	104625756	104626853	BT20_Thompson.10955	0	.	104625756	104626853	0	1	1097	0
chr14	104625764	104626995	melanoma_Garraway_short_term_cultures.34504	0	.	104625764	104626995	0	1	1231	0
chr14	104625801	104626905	brain_AmbionMAQC.22371	0	.	104625801	104626905	0	1	1104	0
chr14	104625819	104626748	H1_polyA+.59670	0	.	104625819	104626748	0	1	929	0
chr14	104626181	104627786	T47D_Burge_Thompson.14724	0	.	104626181	104627786	0	1	1605	0
chr14	104626186	104626732	CD4_Plagnol_resting.31940	0	.	104626186	104626732	0	1	546	0
chr14	104626295	104626840	MB435_Burge.21045	0	.	104626295	104626840	0	1	545	0
chr14	104626447	104626748	HME_Burge.20392	0	.	104626447	104626748	0	1	301	0
chr14	104626788	104627278	CD4_Plagnol_resting.31941	0	.	104626788	104627278	0	1	490	0
chr14	104627223	104636094	MIP101.35418	0	+	104627223	104636094	0	3	3068,1403,240	0,5240,8631
chr14	104627223	104632370	MIP101.35419	0	.	104627223	104632370	0	1	5147	0
chr14	104627340	104628091	MCF7_Burge_Thompson.15404	0	.	104627340	104628091	0	1	751	0
chr14	104627869	104628428	MB435_Burge.21047	0	.	104627869	104628428	0	1	559	0
chr14	104628462	104629158	brain_AmbionMAQC.22372	0	.	104628462	104629158	0	1	696	0
chr14	104628480	104628937	T47D_Burge_Thompson.14726	0	.	104628480	104628937	0	1	457	0
chr14	104628527	104633135	B_Cells_Pritchard.1791463	0	+	104628527	104633135	0	2	3859,678	0,3930
chr14	104628795	104629844	CD4_Plagnol_activated.32908	0	.	104628795	104629844	0	1	1049	0
chr14	104628921	104630352	CD4_Plagnol_resting.31942	0	.	104628921	104630352	0	1	1431	0
chr14	104629277	104632388	T47D_Burge_Thompson.14727	0	.	104629277	104632388	0	1	3111	0
chr14	104629289	104630494	B_cells_Cheung.103114	0	.	104629289	104630494	0	1	1205	0
chr14	104629990	104633131	T47D_Burge_Thompson.14729	0	+	104629990	104633131	0	2	1608,423	0,2718
chr14	104630142	104635954	BT20_Thompson.10957	0	+	104630142	104635954	0	3	149,557,100	0,2451,5712
chr14	104630183	104630562	HME_Burge.20393	0	.	104630183	104630562	0	1	379	0
chr14	104630557	104633194	CD4_Plagnol_resting.31943	0	.	104630557	104633194	0	1	2637	0
chr14	104630560	104632361	CD4_Plagnol_activated.32909	0	.	104630560	104632361	0	1	1801	0
chr14	104630603	104632393	B_cells_Cheung.103115	0	.	104630603	104632393	0	1	1790	0
chr14	104630682	104631370	MCF10A_Thompson.11088	0	.	104630682	104631370	0	1	688	0
chr14	104630870	104631485	MCF7_Burge_Thompson.15405	0	.	104630870	104631485	0	1	615	0
chr14	104631158	104631501	MB435_Burge.21038	0	.	104631158	104631501	0	1	343	0
chr14	104631403	104632251	brain_AmbionMAQC.22373	0	.	104631403	104632251	0	1	848	0
chr14	104631605	104633116	MCF7_Burge_Thompson.15406	0	.	104631605	104633116	0	1	1511	0
chr14	104631727	104632386	melanoma_Garraway_short_term_cultures.34506	0	.	104631727	104632386	0	1	659	0
chr14	104631919	104632915	H1_polyA+.59671	0	.	104631919	104632915	0	1	996	0
chr14	104632446	104633195	B_cells_Cheung.103116	0	.	104632446	104633195	0	1	749	0
chr14	104632456	104633159	brain_AmbionMAQC.22374	0	.	104632456	104633159	0	1	703	0
chr14	104632457	104633190	REMC_MyoepithelialBreast.49223	0	.	104632457	104633190	0	1	733	0
chr14	104632468	104632943	REMC_LuminalBreast.52499	0	.	104632468	104632943	0	1	475	0
chr14	104632489	104637160	MCF10A_Thompson.11089	0	+	104632489	104637160	0	3	661,761,21	0,3365,4650
chr14	104632489	104633132	T47D_Burge_Thompson.14728	0	.	104632489	104633132	0	1	643	0
chr14	104632491	104633164	A549_Myers.40577	0	.	104632491	104633164	0	1	673	0
chr14	104632509	104633138	melanoma_Garraway_short_term_cultures.34505	0	.	104632509	104633138	0	1	629	0
chr14	104632516	104636936	Rinn_00022654	0	+	104632516	104636936	0	4	308,230,364,512	0,404,3337,3908
chr14	104640330	104642021	HIT000095873	0	+	104640330	104642021	0	2	33,864	0,827
chr14	104707637	104708443	prostate_carcinoma.50883	0	.	104707637	104708443	0	1	806	0
chr14	104724553	104724924	B_Cells_Pritchard.1791749	0	.	104724553	104724924	0	1	371	0
chr14	104724557	104725334	REMC_MyoepithelialBreast.49227	0	.	104724557	104725334	0	1	777	0
chr14	104732052	104732596	A549_Myers.40607	0	.	104732052	104732596	0	1	544	0
chr14	104732716	104733117	A549_Myers.40608	0	.	104732716	104733117	0	1	401	0
chr14	104735076	104735729	REMC_MyoepithelialBreast.49228	0	.	104735076	104735729	0	1	653	0
chr14	104735127	104736272	REMC_LuminalBreast.52563	0	.	104735127	104736272	0	1	1145	0
chr14	104735793	104736836	REMC_MyoepithelialBreast.49229	0	.	104735793	104736836	0	1	1043	0
chr14	104736142	104736872	A549_Myers.40611	0	.	104736142	104736872	0	1	730	0
chr14	104738643	104739150	A549_Myers.40613	0	.	104738643	104739150	0	1	507	0
chr14	104739541	104739978	A549_Myers.40615	0	.	104739541	104739978	0	1	437	0
chr14	104741121	104741565	A549_Myers.40617	0	.	104741121	104741565	0	1	444	0
chr14	104742158	104742787	REMC_MyoepithelialBreast.49231	0	.	104742158	104742787	0	1	629	0
chr14	104742508	104743569	A549_Myers.40619	0	.	104742508	104743569	0	1	1061	0
chr14	104744474	104745528	REMC_MyoepithelialBreast.49232	0	.	104744474	104745528	0	1	1054	0
chr14	104744874	104745491	A549_Myers.40620	0	.	104744874	104745491	0	1	617	0
chr14	104745287	104745641	B_cells_Cheung.103125	0	.	104745287	104745641	0	1	354	0
chr14	104952628	104954910	H1_polyA+.59835	0	.	104952628	104954910	0	1	2282	0
chr14	104952719	104954472	HeLa_polyA+_Chen.18460	0	.	104952719	104954472	0	1	1753	0
chr14	104952914	104954805	BT20_Thompson.10994	0	.	104952914	104954805	0	1	1891	0
chr14	104952925	104954799	melanoma_Garraway_short_term_cultures.34543	0	.	104952925	104954799	0	1	1874	0
chr14	104952942	104954779	REMC_LuminalBreast.52512	0	.	104952942	104954779	0	1	1837	0
chr14	104953108	104954033	MeWo_Garraway.18315	0	.	104953108	104954033	0	1	925	0
chr14	104954302	104954786	brain_AmbionMAQC.22957	0	.	104954302	104954786	0	1	484	0
chr14	104954991	104957062	REMC_MyoepithelialBreast.49276	0	-	104954991	104957062	0	3	700,150,742	0,1072,1329
chr14	104955114	104957137	T47D_Burge_Thompson.15056	0	-	104955114	104957137	0	3	580,135,817	0,949,1206
chr14	104955124	104957021	MDAMB231_Thompson.11492	0	-	104955124	104957021	0	2	567,618	0,1279
chr14	104955468	104956985	MCF7_Burge_Thompson.16619	0	-	104955468	104956985	0	2	223,582	0,935
chr14	104955592	104957171	prostate_normal.29887	0	-	104955592	104957171	0	3	99,135,851	0,471,728
chr14	105018545	105019190	B_Cells_Pritchard.1792297	0	.	105018545	105019190	0	1	645	0
chr14	105019138	105019472	MCF7_Burge_Thompson.16650	0	.	105019138	105019472	0	1	334	0
chr14	105019138	105020096	REMC_MyoepithelialBreast.49296	0	.	105019138	105020096	0	1	958	0
chr14	105019214	105020908	T47D_Burge_Thompson.15070	0	.	105019214	105020908	0	1	1694	0
chr14	105019490	105022188	CD4_Snyder.40710	0	.	105019490	105022188	0	1	2698	0
chr14	105019534	105020441	MCF7_Burge_Thompson.16652	0	.	105019534	105020441	0	1	907	0
chr14	105019641	105020281	melanoma_Garraway_short_term_cultures.34557	0	.	105019641	105020281	0	1	640	0
chr14	105020143	105020953	B_Cells_Pritchard.1792303	0	.	105020143	105020953	0	1	810	0
chr14	105020180	105022887	REMC_MyoepithelialBreast.49297	0	.	105020180	105022887	0	1	2707	0
chr14	105020795	105021927	MIP101.35859	0	.	105020795	105021927	0	1	1132	0
chr14	105020960	105022876	T47D_Burge_Thompson.15071	0	.	105020960	105022876	0	1	1916	0
chr14	105021124	105021741	liver_polyA+.71110	0	.	105021124	105021741	0	1	617	0
chr14	105021788	105023060	B_Cells_Pritchard.1792309	0	.	105021788	105023060	0	1	1272	0
chr14	105022306	105023000	CD4_Snyder.40711	0	.	105022306	105023000	0	1	694	0
chr14	105037891	105038487	MDAMB231_Thompson.11473	0	.	105037891	105038487	0	1	596	0
chr14	105037957	105038440	H9_polyA+.23230	0	.	105037957	105038440	0	1	483	0
chr14	105038783	105039401	B_cells_Cheung.103210	0	.	105038783	105039401	0	1	618	0
chr14	105038785	105041561	ZR751_Thompson.12317	0	.	105038785	105041561	0	1	2776	0
chr14	105038859	105041498	BT20_Thompson.10974	0	.	105038859	105041498	0	1	2639	0
chr14	105038869	105039522	REMC_LuminalBreast.52538	0	.	105038869	105039522	0	1	653	0
chr14	105038892	105040146	HeLa_polyA+_Chen.18470	0	.	105038892	105040146	0	1	1254	0
chr14	105039296	105042123	T47D_Burge_Thompson.14731	0	.	105039296	105042123	0	1	2827	0
chr14	105039600	105040630	REMC_LuminalBreast.52539	0	.	105039600	105040630	0	1	1030	0
chr14	105039673	105041471	B_cells_Cheung.103211	0	.	105039673	105041471	0	1	1798	0
chr14	105039752	105040562	MDAMB468_Thompson.12476	0	.	105039752	105040562	0	1	810	0
chr14	105039778	105040549	CD4_Plagnol_activated.32963	0	.	105039778	105040549	0	1	771	0
chr14	105039818	105040210	CD4_Plagnol_resting.32006	0	.	105039818	105040210	0	1	392	0
chr14	105040145	105042161	BT474_Burge_Thompson.18017	0	.	105040145	105042161	0	1	2016	0
chr14	105040477	105041161	CD4_Plagnol_resting.32007	0	.	105040477	105041161	0	1	684	0
chr14	105040578	105041226	prostate_carcinoma.52088	0	.	105040578	105041226	0	1	648	0
chr14	105040600	105041303	CD4_Plagnol_activated.32964	0	.	105040600	105041303	0	1	703	0
chr14	105040612	105041706	breast_Burge.20198	0	.	105040612	105041706	0	1	1094	0
chr14	105040678	105041363	HeLa_polyA+_Chen.18471	0	.	105040678	105041363	0	1	685	0
chr14	105040691	105041314	MCF7_Burge_Thompson.15365	0	.	105040691	105041314	0	1	623	0
chr14	105041214	105042133	CD4_Plagnol_resting.32008	0	.	105041214	105042133	0	1	919	0
chr14	105041356	105042063	liver_polyA+.71121	0	.	105041356	105042063	0	1	707	0
chr14	105041472	105041908	CD4_Plagnol_activated.32965	0	.	105041472	105041908	0	1	436	0
chr14	105042410	105043165	CD4_Plagnol_activated.32966	0	.	105042410	105043165	0	1	755	0
chr14	105042414	105043087	B_cells_Cheung.103213	0	.	105042414	105043087	0	1	673	0
chr14	105042414	105043084	MCF7_Burge_Thompson.15367	0	.	105042414	105043084	0	1	670	0
chr14	105042450	105043041	T47D_Burge_Thompson.14732	0	.	105042450	105043041	0	1	591	0
chr14	105042467	105043308	melanoma_Garraway_short_term_cultures.34560	0	.	105042467	105043308	0	1	841	0
chr14	105042486	105042921	liver_polyA+.71122	0	.	105042486	105042921	0	1	435	0
chr14	105042666	105043462	REMC_MyoepithelialBreast.49303	0	.	105042666	105043462	0	1	796	0
chr14	105043956	105047940	REMC_LuminalBreast.52543	0	.	105043956	105047940	0	1	3984	0
chr14	105044181	105045411	REMC_BreastStem.26623	0	.	105044181	105045411	0	1	1230	0
chr14	105044619	105044946	B_Cells_Pritchard.1792325	0	-	105044619	105044946	0	1	327	0
chr14	105044619	105045229	REMC_MyoepithelialBreast.49304	0	.	105044619	105045229	0	1	610	0
chr14	105044655	105045756	melanoma_Garraway_short_term_cultures.34561	0	.	105044655	105045756	0	1	1101	0
chr14	105044664	105045249	HeLa_polyA+_Chen.18474	0	.	105044664	105045249	0	1	585	0
chr14	105045315	105045841	HeLa_polyA+_Chen.18475	0	.	105045315	105045841	0	1	526	0
chr14	105045645	105046595	REMC_BreastStem.26624	0	.	105045645	105046595	0	1	950	0
chr14	105045755	105046596	REMC_MyoepithelialBreast.49305	0	.	105045755	105046596	0	1	841	0
chr14	105047050	105047669	HeLa_polyA+_Chen.18476	0	.	105047050	105047669	0	1	619	0
chr14	105048920	105049563	HeLa_polyA+_Chen.18480	0	.	105048920	105049563	0	1	643	0
chr14	105049154	105049524	liver_polyA+.70706	0	.	105049154	105049524	0	1	370	0
chr14	105049205	105049555	A549_Myers.40676	0	.	105049205	105049555	0	1	350	0
chr14	105051468	105054593	REMC_LuminalBreast.52545	0	.	105051468	105054593	0	1	3125	0
chr14	105057027	105057899	REMC_LuminalBreast.52547	0	.	105057027	105057899	0	1	872	0
chr14	105059054	105059615	B_cells_Cheung.103215	0	.	105059054	105059615	0	1	561	0
chr14	105069236	105071716	HIT000093000	0	+	105069236	105071716	0	2	665,1366	0,1114
chr14	105069250	105070130	MCF7_Burge_Thompson.15371	0	.	105069250	105070130	0	1	880	0
chr14	105070058	105071385	REMC_MyoepithelialBreast.49310	0	.	105070058	105071385	0	1	1327	0
chr14	105070105	105071356	REMC_LuminalBreast.52549	0	.	105070105	105071356	0	1	1251	0
chr14	105070215	105071044	MCF7_Burge_Thompson.15372	0	.	105070215	105071044	0	1	829	0
chr14	105070243	105071701	melanoma_Garraway_short_term_cultures.34567	0	.	105070243	105071701	0	1	1458	0
chr14	105070688	105071443	prostate_carcinoma.50919	0	.	105070688	105071443	0	1	755	0
chr14	105070849	105071620	ZR751_Thompson.12322	0	.	105070849	105071620	0	1	771	0
chr14	105072052	105072361	B_Cells_Pritchard.1792379	0	-	105072052	105072361	0	1	309	0
chr14	105075224	105075795	A549_Myers.40685	0	.	105075224	105075795	0	1	571	0
chr14	105075909	105076357	A549_Myers.40686	0	.	105075909	105076357	0	1	448	0
chr14	105100007	105101929	B_cells_Cheung.103228	0	.	105100007	105101929	0	1	1922	0
chr14	105100025	105101479	B_Cells_Pritchard.1800945	0	-	105100025	105101479	0	1	1454	0
chr14	105101602	105106122	B_Cells_Pritchard.1800951	0	-	105101602	105106122	0	2	308,1535	0,2985
chr14	105102696	105103118	B_cells_Cheung.103229	0	.	105102696	105103118	0	1	422	0
chr14	105104722	105105894	B_cells_Cheung.103231	0	.	105104722	105105894	0	1	1172	0
chr14	105105316	105105897	B_Cells_Pritchard.1800949	0	+	105105316	105105897	0	2	51,462	0,119
chr14	105106413	105108815	B_cells_Cheung.132510	0	.	105106413	105108815	0	1	2402	0
chr14	105106421	105108481	B_Cells_Pritchard.1800959	0	+	105106421	105108481	0	1	2060	0
chr14	105110570	105111278	B_cells_Cheung.132513	0	.	105110570	105111278	0	1	708	0
chr14	105113416	105115943	B_cells_Cheung.132514	0	.	105113416	105115943	0	1	2527	0
chr14	105117913	105119673	B_cells_Cheung.132515	0	.	105117913	105119673	0	1	1760	0
chr14	105118898	105119272	A549_Myers.40691	0	.	105118898	105119272	0	1	374	0
chr14	105119996	105120693	B_cells_Cheung.132516	0	.	105119996	105120693	0	1	697	0
chr14	105122662	105123121	B_cells_Cheung.132520	0	.	105122662	105123121	0	1	459	0
chr14	105132671	105134829	HIT000324017	0	-	105132671	105134829	0	1	2158	0
chr14	105158373	105158702	B_cells_Cheung.132535	0	.	105158373	105158702	0	1	329	0
chr14	106218559	106219351	pHIT000024759	0	-	106218559	106219351	0	1	792	0
chr14	106308947	106309616	B_cells_Cheung.104231	0	.	106308947	106309616	0	1	669	0
chr14	106309070	106309662	prostate_carcinoma.51012	0	.	106309070	106309662	0	1	592	0
chr14	106312180	106327512	B_cells_Cheung.104226	0	.	106312180	106327512	0	1	15332	0
chr14	106315314	106323589	prostate_carcinoma.51015	0	.	106315314	106323589	0	1	8275	0
chr14	106324186	106325773	prostate_carcinoma.51016	0	.	106324186	106325773	0	1	1587	0
chr14	106331625	106332398	prostate_carcinoma.51021	0	.	106331625	106332398	0	1	773	0
chr14	106331664	106332466	B_cells_Cheung.103305	0	.	106331664	106332466	0	1	802	0
chr14	106331730	106332402	HepG2_Caltech_ENCODE.18692	0	.	106331730	106332402	0	1	672	0
chr14	106333090	106334288	HepG2_Caltech_ENCODE.18693	0	.	106333090	106334288	0	1	1198	0
chr14	106333393	106333980	B_cells_Cheung.103307	0	.	106333393	106333980	0	1	587	0
chr15	18437991	18438362	B_Cells_Pritchard.1794515	0	.	18437991	18438362	0	1	371	0
chr15	18765655	18769255	Rinn_00023287	0	+	18765655	18769255	0	2	162,2577	0,1023
chr15	18765655	18791038	Rinn_00023288	0	+	18765655	18791038	0	4	162,129,29,30	0,1023,24355,25353
chr15	18765655	18791098	Rinn_00023847	0	+	18765655	18791098	0	4	162,129,108,95	0,1023,24355,25348
chr15	18774756	18775138	H1_polyA+.59761	0	.	18774756	18775138	0	1	382	0
chr15	18795625	18797930	HIT000022537	0	+	18795625	18797930	0	2	158,1980	0,325
chr15	18804329	18805985	REMC_MyoepithelialBreast.49316	0	.	18804329	18805985	0	1	1656	0
chr15	18804436	18806935	A549_Myers.40714	0	+	18804436	18806935	0	2	135,1155	0,1344
chr15	18823085	18823472	BT474_Burge_Thompson.16968	0	.	18823085	18823472	0	1	387	0
chr15	18825471	18827506	H1_polyA+.59762	0	.	18825471	18827506	0	1	2035	0
chr15	18835474	18839789	H1_polyA+.59769	0	.	18835474	18839789	0	1	4315	0
chr15	18840035	18840529	H1_polyA+.59770	0	.	18840035	18840529	0	1	494	0
chr15	18840051	18840531	REMC_MyoepithelialBreast.49319	0	.	18840051	18840531	0	1	480	0
chr15	18985048	18987162	HIT000044826	0	+	18985048	18987162	0	1	2114	0
chr15	19093155	19093911	K562.23103	0	.	19093155	19093911	0	1	756	0
chr15	19130046	19132614	REMC_MyoepithelialBreast.49333	0	.	19130046	19132614	0	1	2568	0
chr15	19130227	19132821	prostate_carcinoma.51058	0	.	19130227	19132821	0	1	2594	0
chr15	19158875	19159210	K562.23105	0	.	19158875	19159210	0	1	335	0
chr15	19158882	19159185	BT20_Thompson.11001	0	.	19158882	19159185	0	1	303	0
chr15	19160372	19161310	REMC_MyoepithelialBreast.49337	0	.	19160372	19161310	0	1	938	0
chr15	19179871	19180537	REMC_LuminalBreast.52617	0	.	19179871	19180537	0	1	666	0
chr15	19179874	19180542	REMC_MyoepithelialBreast.49354	0	.	19179874	19180542	0	1	668	0
chr15	19180645	19182520	REMC_MyoepithelialBreast.49355	0	.	19180645	19182520	0	1	1875	0
chr15	19180937	19181894	REMC_LuminalBreast.52618	0	.	19180937	19181894	0	1	957	0
chr15	19194226	19196093	melanoma_Garraway_short_term_cultures.34610	0	.	19194226	19196093	0	1	1867	0
chr15	19194334	19196004	T47D_Burge_Thompson.14745	0	.	19194334	19196004	0	1	1670	0
chr15	19194449	19195757	BT20_Thompson.11003	0	.	19194449	19195757	0	1	1308	0
chr15	19194546	19196211	H1_polyA+.59818	0	.	19194546	19196211	0	1	1665	0
chr15	19194599	19195629	B_cells_Cheung.103332	0	.	19194599	19195629	0	1	1030	0
chr15	19194727	19195033	ovary_Raymond.140791	0	.	19194727	19195033	0	1	306	0
chr15	19194807	19195393	A549_Myers.40730	0	.	19194807	19195393	0	1	586	0
chr15	19206592	19207522	REMC_MyoepithelialBreast.49367	0	.	19206592	19207522	0	1	930	0
chr15	19206720	19207521	REMC_LuminalBreast.52626	0	.	19206720	19207521	0	1	801	0
chr15	19207675	19210465	REMC_LuminalBreast.52627	0	.	19207675	19210465	0	1	2790	0
chr15	19207718	19210458	REMC_MyoepithelialBreast.49368	0	.	19207718	19210458	0	1	2740	0
chr15	19207763	19208167	melanoma_Garraway_short_term_cultures.34612	0	.	19207763	19208167	0	1	404	0
chr15	19240936	19241247	A549_Myers.40733	0	.	19240936	19241247	0	1	311	0
chr15	19241249	19249064	pHIT000113978	0	+	19241249	19249064	0	2	170,484	0,7331
chr15	19246301	19246682	B_cells_Cheung.103340	0	.	19246301	19246682	0	1	381	0
chr15	19264744	19266922	HIT000026498	0	+	19264744	19266922	0	2	1686,454	0,1724
chr15	19265616	19266404	T47D_Burge_Thompson.14747	0	.	19265616	19266404	0	1	788	0
chr15	19279954	19280362	pHIT000113981	0	+	19279954	19280362	0	1	408	0
chr15	19344867	19346121	prostate_carcinoma.51084	0	.	19344867	19346121	0	1	1254	0
chr15	19346611	19348296	prostate_carcinoma.51085	0	.	19346611	19348296	0	1	1685	0
chr15	19346700	19357769	prostate_carcinoma.51083	0	+	19346700	19357769	0	2	1401,769	0,10300
chr15	19347714	19349146	prostate_normal.29861	0	.	19347714	19349146	0	1	1432	0
chr15	19347877	19348745	A549_Myers.40736	0	.	19347877	19348745	0	1	868	0
chr15	19348622	19348922	prostate_carcinoma.51086	0	.	19348622	19348922	0	1	300	0
chr15	19356848	19366648	H1_polyA+.59822	0	.	19356848	19366648	0	1	9800	0
chr15	19362936	19364081	prostate_normal.29863	0	.	19362936	19364081	0	1	1145	0
chr15	19363017	19364071	prostate_carcinoma.51089	0	.	19363017	19364071	0	1	1054	0
chr15	19363182	19363901	T47D_Burge_Thompson.14750	0	.	19363182	19363901	0	1	719	0
chr15	19410425	19463307	HIT000098599	0	+	19410425	19463307	0	5	329,186,44,158,2700	0,1937,31668,41385,50182
chr15	19410631	19412846	testes_Burge.26767	0	+	19410631	19412846	0	2	127,258	0,1957
chr15	19410631	19411377	testes_Burge.26766	0	.	19410631	19411377	0	1	746	0
chr15	19410899	19412065	A549_Myers.40741	0	.	19410899	19412065	0	1	1166	0
chr15	19411483	19412234	BT474_Burge_Thompson.16976	0	.	19411483	19412234	0	1	751	0
chr15	19412131	19412910	A549_Myers.40742	0	.	19412131	19412910	0	1	779	0
chr15	19618321	19622958	HIT000047656	0	+	19618321	19622958	0	1	4637	0
chr15	19929897	19930253	A549_Myers.40746	0	.	19929897	19930253	0	1	356	0
chr15	19949602	19950512	B_cells_Cheung.103347	0	.	19949602	19950512	0	1	910	0
chr15	19949735	19950183	pHIT000113989	0	-	19949735	19950183	0	2	317,46	0,402
chr15	19949735	19967857	pHIT000024779	0	-	19949735	19967857	0	3	317,75,46	0,402,18076
chr15	19957335	19957646	B_cells_Cheung.103353	0	.	19957335	19957646	0	1	311	0
chr15	19962999	19967857	pHIT000113990	0	-	19962999	19967857	0	2	440,46	0,4812
chr15	20004778	20005339	HeLa_polyA+_Chen.18514	0	.	20004778	20005339	0	1	561	0
chr15	20013481	20013856	HeLa_polyA+_Chen.18516	0	.	20013481	20013856	0	1	375	0
chr15	20016933	20017387	HeLa_polyA+_Chen.18517	0	.	20016933	20017387	0	1	454	0
chr15	20026978	20029140	Rinn_00023572	0	-	20026978	20029140	0	2	931,231	0,1931
chr15	20028227	20028672	HeLa_polyA-_Chen.9945	0	.	20028227	20028672	0	1	445	0
chr15	20028260	20028581	A549_Myers.40764	0	.	20028260	20028581	0	1	321	0
chr15	20040667	20041020	BT474_Burge_Thompson.16980	0	.	20040667	20041020	0	1	353	0
chr15	20040671	20041032	B_Cells_Pritchard.1796201	0	.	20040671	20041032	0	1	361	0
chr15	20040789	20041268	A549_Myers.40765	0	.	20040789	20041268	0	1	479	0
chr15	20042570	20043110	BT474_Burge_Thompson.16981	0	.	20042570	20043110	0	1	540	0
chr15	20042780	20047032	Rinn_00023573	0	-	20042780	20047032	0	5	323,185,155,1600,512	0,932,1232,1501,3740
chr15	20042838	20043434	T47D_Burge_Thompson.14752	0	.	20042838	20043434	0	1	596	0
chr15	20042872	20043176	prostate_carcinoma.51104	0	.	20042872	20043176	0	1	304	0
chr15	20046629	20047272	A549_Myers.40766	0	.	20046629	20047272	0	1	643	0
chr15	20046864	20047523	T47D_Burge_Thompson.14753	0	.	20046864	20047523	0	1	659	0
chr15	20047002	20047518	BT474_Burge_Thompson.16982	0	.	20047002	20047518	0	1	516	0
chr15	20648146	20648861	brain_AmbionMAQC.22457	0	.	20648146	20648861	0	1	715	0
chr15	20648308	20656856	XR_037628	0	+	20648308	20656856	0	10	226,130,31,52,284,60,143,214,370,2358	0,1530,2474,2773,2912,4449,4837,5272,5800,6190
chr15	20654719	20655039	prostate_normal.29911	0	.	20654719	20655039	0	1	320	0
chr15	20654861	20655185	B_cells_Cheung.103431	0	.	20654861	20655185	0	1	324	0
chr15	20733309	20733687	HepG2_Caltech_ENCODE.18734	0	.	20733309	20733687	0	1	378	0
chr15	21051654	21052708	K562.23196	0	.	21051654	21052708	0	1	1054	0
chr15	21208342	21214030	Rinn_00023298	0	+	21208342	21214030	0	2	373,2762	0,2926
chr15	21286255	21286652	A549_Myers.40834	0	.	21286255	21286652	0	1	397	0
chr15	21367842	21369961	B_cells_Cheung.103466	0	.	21367842	21369961	0	1	2119	0
chr15	21367892	21369878	BT20_Thompson.11034	0	.	21367892	21369878	0	1	1986	0
chr15	21370274	21371472	prostate_carcinoma.51195	0	.	21370274	21371472	0	1	1198	0
chr15	21376116	21376735	B_cells_Cheung.103470	0	.	21376116	21376735	0	1	619	0
chr15	21394099	21394557	melanoma_Garraway_short_term_cultures.34682	0	.	21394099	21394557	0	1	458	0
chr15	21407820	21409177	melanoma_Garraway_short_term_cultures.34683	0	.	21407820	21409177	0	1	1357	0
chr15	21492542	21494333	HepG2_Caltech_ENCODE.18746	0	.	21492542	21494333	0	1	1791	0
chr15	21498137	21503022	HepG2_Caltech_ENCODE.18752	0	.	21498137	21503022	0	1	4885	0
chr15	21503072	21507831	HepG2_Caltech_ENCODE.18753	0	.	21503072	21507831	0	1	4759	0
chr15	21506093	21507718	H1_polyA+.59886	0	.	21506093	21507718	0	1	1625	0
chr15	21510110	21510546	HepG2_Caltech_ENCODE.18757	0	.	21510110	21510546	0	1	436	0
chr15	21548756	21549396	BT474_Burge_Thompson.17032	0	.	21548756	21549396	0	1	640	0
chr15	21751198	21751617	BT474_Burge_Thompson.17033	0	.	21751198	21751617	0	1	419	0
chr15	21961002	21966149	HIT000092879	0	-	21961002	21966149	0	2	4133,137	0,5010
chr15	21961003	21966144	HIT000264078	0	-	21961003	21966144	0	2	4132,132	0,5009
chr15	21961017	21966188	Rinn_00023243	0	-	21961017	21966188	0	2	4118,177	0,4994
chr15	21961018	21966146	NR_026647	0	-	21961018	21966146	0	1	5128	0
chr15	21963261	21966188	HIT000044004	0	-	21963261	21966188	0	2	1874,176	0,2751
chr15	22053359	22076704	Rinn_00023306	0	+	22053359	22076704	0	5	138,163,193,143,448	0,17670,19346,21090,22897
chr15	22156976	22189895	Rinn_00023308	0	+	22156976	22189895	0	7	2874,162,92,243,179,92,185	0,4447,5481,14866,16007,20301,32734
chr15	22161480	22189895	Rinn_00023868	0	+	22161480	22189895	0	6	105,92,243,179,92,185	0,977,10362,11503,15797,28230
chr15	22193065	22194557	Rinn_00023310	0	+	22193065	22194557	0	2	31,1252	0,240
chr15	22241693	22243179	H1_polyA+.59889	0	.	22241693	22243179	0	1	1486	0
chr15	22289261	22289792	H1_polyA+.59897	0	.	22289261	22289792	0	1	531	0
chr15	22289375	22309416	Rinn_00023872	0	+	22289375	22309416	0	5	245,86,188,135,198	0,14202,14817,15724,19843
chr15	22289375	22309416	Rinn_00023871	0	+	22289375	22309416	0	5	193,86,188,135,198	0,14202,14817,15724,19843
chr15	22304350	22330628	Rinn_00023313	0	+	22304350	22330628	0	4	30,135,116,695	0,749,5511,25583
chr15	22329930	22384017	Rinn_00023213	0	+	22329930	22384017	0	9	262,128,146,34,28,98,305,98,212	0,1988,32964,34839,36091,36340,40818,41215,53875
chr15	22329936	22331993	Rinn_00023314	0	+	22329936	22331993	0	2	256,58	0,1999
chr15	22421706	22423468	H1_polyA+.59912	0	.	22421706	22423468	0	1	1762	0
chr15	22448675	22450031	H1_polyA+.59917	0	.	22448675	22450031	0	1	1356	0
chr15	22450303	22452418	H1_polyA+.59918	0	.	22450303	22452418	0	1	2115	0
chr15	22453309	22453770	BT474_Burge_Thompson.17037	0	.	22453309	22453770	0	1	461	0
chr15	22486138	22486589	H1_polyA+.59932	0	.	22486138	22486589	0	1	451	0
chr15	22542879	22544120	H1_polyA+.59933	0	.	22542879	22544120	0	1	1241	0
chr15	22779999	22781034	CD4_Snyder.40927	0	.	22779999	22781034	0	1	1035	0
chr15	22787987	22792512	brain_AmbionMAQC.22753	0	.	22787987	22792512	0	1	4525	0
chr15	22789379	22792136	CD4_Plagnol_resting.32328	0	.	22789379	22792136	0	1	2757	0
chr15	22789406	22790355	MCF10A_Thompson.11137	0	.	22789406	22790355	0	1	949	0
chr15	22789767	22791966	B_cells_Cheung.103484	0	.	22789767	22791966	0	1	2199	0
chr15	22791284	22791994	T47D_Burge_Thompson.14770	0	.	22791284	22791994	0	1	710	0
chr15	22791303	22792431	prostate_normal.30014	0	.	22791303	22792431	0	1	1128	0
chr15	22795888	22797276	CD4_Plagnol_resting.32331	0	.	22795888	22797276	0	1	1388	0
chr15	22796754	22797300	H9_polyA-_Chen.7536	0	.	22796754	22797300	0	1	546	0
chr15	22796762	22797269	B_Cells_Pritchard.1801281	0	-	22796762	22797269	0	1	507	0
chr15	22808405	22818678	B_Cells_Pritchard.1801323	0	-	22808405	22818678	0	4	73,1273,1379,1908	0,3799,5604,8365
chr15	22809528	22813568	B_cells_Cheung.103504	0	.	22809528	22813568	0	1	4040	0
chr15	22810561	22832798	Rinn_00023880	0	+	22810561	22832798	0	4	1757,123,43,15970	0,4704,5505,6267
chr15	22811840	22813063	brain_AmbionMAQC.22761	0	.	22811840	22813063	0	1	1223	0
chr15	22811989	22812795	H1_rRNA-depleted_UCSD_REMC.46451	0	.	22811989	22812795	0	1	806	0
chr15	22812030	22813524	prostate_normal.30017	0	.	22812030	22813524	0	1	1494	0
chr15	22812035	22812929	melanoma_Garraway_short_term_cultures.34710	0	.	22812035	22812929	0	1	894	0
chr15	22812074	22813538	HepG2_Caltech_ENCODE.20644	0	.	22812074	22813538	0	1	1464	0
chr15	22812083	22813267	REMC_MyoepithelialBreast.49472	0	.	22812083	22813267	0	1	1184	0
chr15	22812133	22815185	H9_polyA-_Chen.7546	0	.	22812133	22815185	0	1	3052	0
chr15	22812136	22812905	kidney_Gilad.45818	0	.	22812136	22812905	0	1	769	0
chr15	22812136	22812963	liver_polyA+.70948	0	.	22812136	22812963	0	1	827	0
chr15	22812178	22813530	prostate_carcinoma.51749	0	.	22812178	22813530	0	1	1352	0
chr15	22812178	22832731	Rinn_00023881	0	+	22812178	22832731	0	5	140,123,43,136,14110	0,3087,3888,4650,6443
chr15	22812215	22812900	NEC_from_H9.38885	0	.	22812215	22812900	0	1	685	0
chr15	22812276	22812705	IMR90_UCSD_REMC.26199	0	-	22812276	22812705	0	1	429	0
chr15	22815286	22832148	H9_polyA-_Chen.7547	0	+	22815286	22832148	0	3	102,42,15319	0,781,1543
chr15	22816063	22832731	Rinn_00023882	0	+	22816063	22832731	0	3	46,136,14110	0,765,2558
chr15	22816513	22837900	H1_polyA+.67702	0	-	22816513	22837900	0	2	19093,1166	0,20221
chr15	22819439	22824315	brain_AmbionMAQC.22476	0	.	22819439	22824315	0	1	4876	0
chr15	22819450	22824301	B_cells_Cheung.103506	0	.	22819450	22824301	0	1	4851	0
chr15	22819453	22824248	melanoma_Garraway_short_term_cultures.34713	0	.	22819453	22824248	0	1	4795	0
chr15	22819504	22824232	NEC_from_H9.39064	0	.	22819504	22824232	0	1	4728	0
chr15	22819689	22824226	prostate_carcinoma.51775	0	.	22819689	22824226	0	1	4537	0
chr15	22820349	22824243	B_Cells_Pritchard.1800287	0	.	22820349	22824243	0	1	3894	0
chr15	22821438	22824228	BT474_Burge_Thompson.17056	0	.	22821438	22824228	0	1	2790	0
chr15	22822024	22822486	H1_rRNA-depleted_UCSD_REMC.50524	0	.	22822024	22822486	0	1	462	0
chr15	22822946	22824210	T47D_Burge_Thompson.14776	0	.	22822946	22824210	0	1	1264	0
chr15	22823658	22824187	CD4_Snyder.40775	0	.	22823658	22824187	0	1	529	0
chr15	22823735	22825298	H1_rRNA-depleted_UCSD_REMC.50529	0	.	22823735	22825298	0	1	1563	0
chr15	22824476	22832732	melanoma_Garraway_short_term_cultures.34714	0	.	22824476	22832732	0	1	8256	0
chr15	22824486	22832749	NEC_from_H9.39058	0	.	22824486	22832749	0	1	8263	0
chr15	22824537	22832951	REMC_MyoepithelialBreast.49478	0	.	22824537	22832951	0	1	8414	0
chr15	22826614	22832768	brain_AmbionMAQC.22521	0	.	22826614	22832768	0	1	6154	0
chr15	22826704	22832759	prostate_carcinoma.51772	0	.	22826704	22832759	0	1	6055	0
chr15	22827519	22829389	BT474_Burge_Thompson.17059	0	.	22827519	22829389	0	1	1870	0
chr15	22827818	22832763	B_cells_Cheung.103509	0	.	22827818	22832763	0	1	4945	0
chr15	22827823	22832733	B_Cells_Pritchard.1800293	0	.	22827823	22832733	0	1	4910	0
chr15	22827884	22829258	T47D_Burge_Thompson.14778	0	.	22827884	22829258	0	1	1374	0
chr15	22828112	22830969	HIT000021439	0	+	22828112	22830969	0	1	2857	0
chr15	22828174	22829838	MCF10A_Thompson.11151	0	.	22828174	22829838	0	1	1664	0
chr15	22828188	22832732	prostate_normal.29951	0	.	22828188	22832732	0	1	4544	0
chr15	22828201	22829138	H1_rRNA-depleted_UCSD_REMC.50537	0	.	22828201	22829138	0	1	937	0
chr15	22828434	22828930	A549_Myers.40880	0	.	22828434	22828930	0	1	496	0
chr15	22828438	22829158	CD4_Snyder.40780	0	.	22828438	22829158	0	1	720	0
chr15	22828480	22829607	MeI_Garraway.9085	0	.	22828480	22829607	0	1	1127	0
chr15	22838360	22840748	melanoma_Garraway_short_term_cultures.34717	0	.	22838360	22840748	0	1	2388	0
chr15	22838373	22840767	REMC_LuminalBreast.52677	0	.	22838373	22840767	0	1	2394	0
chr15	22840014	22845801	H9_polyA-_Chen.7498	0	.	22840014	22845801	0	1	5787	0
chr15	22844824	22845773	B_Cells_Pritchard.1800323	0	.	22844824	22845773	0	1	949	0
chr15	22844959	22845400	H1_rRNA-depleted_UCSD_REMC.50552	0	.	22844959	22845400	0	1	441	0
chr15	22845287	22847478	NEC_from_H9.38939	0	.	22845287	22847478	0	1	2191	0
chr15	22845302	22847473	REMC_MyoepithelialBreast.49483	0	.	22845302	22847473	0	1	2171	0
chr15	22846009	22847465	MCF10A_Thompson.11159	0	.	22846009	22847465	0	1	1456	0
chr15	22846133	22846693	H1_rRNA-depleted_UCSD_REMC.50553	0	.	22846133	22846693	0	1	560	0
chr15	22846199	22846683	IMR90_UCSD_REMC.26209	0	-	22846199	22846683	0	1	484	0
chr15	22846258	22847491	BT474_Burge_Thompson.17136	0	.	22846258	22847491	0	1	1233	0
chr15	22846294	22847617	T47D_Burge_Thompson.14781	0	.	22846294	22847617	0	1	1323	0
chr15	22847878	22848797	BT474_Burge_Thompson.17137	0	.	22847878	22848797	0	1	919	0
chr15	22847904	22850268	T47D_Burge_Thompson.14783	0	.	22847904	22850268	0	1	2364	0
chr15	22847967	22848269	A549_Myers.40887	0	.	22847967	22848269	0	1	302	0
chr15	22847989	22849810	melanoma_Garraway_short_term_cultures.34721	0	.	22847989	22849810	0	1	1821	0
chr15	22848183	22849255	brain_AmbionMAQC.22525	0	.	22848183	22849255	0	1	1072	0
chr15	22848457	22848820	pHIT000024809	0	-	22848457	22848820	0	1	363	0
chr15	22850966	22852130	REMC_MyoepithelialBreast.49484	0	.	22850966	22852130	0	1	1164	0
chr15	22853879	22854275	pHIT000024805	0	-	22853879	22854275	0	1	396	0
chr15	22858842	22859422	prostate_carcinoma.51784	0	.	22858842	22859422	0	1	580	0
chr15	22859089	22860787	HepG2_Caltech_ENCODE.20649	0	.	22859089	22860787	0	1	1698	0
chr15	22860589	22860915	H1_rRNA-depleted_UCSD_REMC.47991	0	.	22860589	22860915	0	1	326	0
chr15	22861594	22862218	brain_AmbionMAQC.22530	0	.	22861594	22862218	0	1	624	0
chr15	22862277	22862775	CD4_Snyder.40788	0	.	22862277	22862775	0	1	498	0
chr15	22864808	22865609	NEC_from_H9.38899	0	.	22864808	22865609	0	1	801	0
chr15	22865241	22866493	BT474_Burge_Thompson.17142	0	.	22865241	22866493	0	1	1252	0
chr15	22865952	22866499	NEC_from_H9.38900	0	.	22865952	22866499	0	1	547	0
chr15	22867781	22869104	brain_AmbionMAQC.22534	0	.	22867781	22869104	0	1	1323	0
chr15	22867873	22868881	REMC_LuminalBreast.52682	0	.	22867873	22868881	0	1	1008	0
chr15	22868583	22869096	MCF10A_Thompson.11163	0	.	22868583	22869096	0	1	513	0
chr15	22884285	22884945	CD4_Plagnol_resting.32193	0	.	22884285	22884945	0	1	660	0
chr15	22884445	22885038	IMR90_UCSD_REMC.26223	0	-	22884445	22885038	0	1	593	0
chr15	22884616	22885030	A549_Myers.40900	0	.	22884616	22885030	0	1	414	0
chr15	22888199	22888617	XR_040062	0	-	22888199	22888617	0	1	418	0
chr15	22888200	22888617	HIT000263451	0	-	22888200	22888617	0	1	417	0
chr15	22905871	22930194	pHIT000088206	0	-	22905871	22930194	0	3	104,162,139	0,9401,24184
chr15	22906675	22912679	Rinn_00023883	0	+	22906675	22912679	0	4	101,131,359,103	0,1328,4862,5901
chr15	22914169	22920248	H9_polyA+.81919	0	-	22914169	22920248	0	3	182,1350,207	0,1139,5872
chr15	22915231	22916359	H9_polyA-_Chen.7507	0	.	22915231	22916359	0	1	1128	0
chr15	22915300	22916658	B_Cells_Pritchard.1800379	0	-	22915300	22916658	0	1	1358	0
chr15	22915302	22917007	REMC_LuminalBreast.52686	0	.	22915302	22917007	0	1	1705	0
chr15	22915310	22917008	B_cells_Cheung.103534	0	.	22915310	22917008	0	1	1698	0
chr15	22915310	22918675	melanoma_Garraway_short_term_cultures.34732	0	.	22915310	22918675	0	1	3365	0
chr15	22924595	22926285	H9_polyA+.23273	0	.	22924595	22926285	0	1	1690	0
chr15	22925457	22926241	H9_polyA-_Chen.7512	0	.	22925457	22926241	0	1	784	0
chr15	22931879	22934295	HIT000062482	0	+	22931879	22934295	0	1	2416	0
chr15	22931881	22934293	NR_022009	0	+	22931881	22934293	0	1	2412	0
chr15	22933120	22933630	H1_rRNA-depleted_UCSD_REMC.46497	0	.	22933120	22933630	0	1	510	0
chr15	22933132	22933623	brain_AmbionMAQC.22511	0	.	22933132	22933623	0	1	491	0
chr15	22933261	22933608	prostate_normal.29970	0	.	22933261	22933608	0	1	347	0
chr15	22933819	22934251	B_cells_Cheung.103543	0	.	22933819	22934251	0	1	432	0
chr15	22966294	22966909	brain_AmbionMAQC.22517	0	.	22966294	22966909	0	1	615	0
chr15	22969249	22970102	brain_AmbionMAQC.22519	0	.	22969249	22970102	0	1	853	0
chr15	22971770	22972486	brain_AmbionMAQC.22633	0	.	22971770	22972486	0	1	716	0
chr15	22979231	22980437	brain_AmbionMAQC.22637	0	.	22979231	22980437	0	1	1206	0
chr15	22999790	23000550	brain_AmbionMAQC.22645	0	.	22999790	23000550	0	1	760	0
chr15	23003146	23004305	prostate_carcinoma.51282	0	.	23003146	23004305	0	1	1159	0
chr15	23003477	23004161	prostate_normal.29974	0	.	23003477	23004161	0	1	684	0
chr15	23013621	23014324	prostate_carcinoma.51286	0	.	23013621	23014324	0	1	703	0
chr15	23018935	23019433	brain_AmbionMAQC.22652	0	.	23018935	23019433	0	1	498	0
chr15	23083736	23084325	B_Cells_Pritchard.1800767	0	.	23083736	23084325	0	1	589	0
chr15	23083789	23085386	B_cells_Cheung.103549	0	.	23083789	23085386	0	1	1597	0
chr15	23084076	23085400	REMC_MyoepithelialBreast.49505	0	.	23084076	23085400	0	1	1324	0
chr15	23084430	23085359	brain_AmbionMAQC.22678	0	.	23084430	23085359	0	1	929	0
chr15	23098033	23108123	REMC_MyoepithelialBreast.49512	0	.	23098033	23108123	0	1	10090	0
chr15	23099065	23103039	REMC_BreastStem.26672	0	.	23099065	23103039	0	1	3974	0
chr15	23099086	23108147	REMC_LuminalBreast.52705	0	.	23099086	23108147	0	1	9061	0
chr15	23109501	23109855	REMC_BreastStem.26674	0	.	23109501	23109855	0	1	354	0
chr15	23110572	23127467	REMC_LuminalBreast.52709	0	.	23110572	23127467	0	1	16895	0
chr15	23111523	23116487	REMC_BreastStem.26677	0	.	23111523	23116487	0	1	4964	0
chr15	23112111	23127423	REMC_MyoepithelialBreast.49517	0	.	23112111	23127423	0	1	15312	0
chr15	23113743	23114227	B_Cells_Pritchard.1800869	0	.	23113743	23114227	0	1	484	0
chr15	23113938	23115403	B_cells_Cheung.103561	0	.	23113938	23115403	0	1	1465	0
chr15	23114704	23115694	B_Cells_Pritchard.1800873	0	.	23114704	23115694	0	1	990	0
chr15	23123201	23125230	REMC_BreastStem.26681	0	.	23123201	23125230	0	1	2029	0
chr15	23123586	23125695	B_Cells_Pritchard.1800893	0	.	23123586	23125695	0	1	2109	0
chr15	23124049	23125499	B_cells_Cheung.103570	0	.	23124049	23125499	0	1	1450	0
chr15	23124085	23124866	prostate_carcinoma.51298	0	.	23124085	23124866	0	1	781	0
chr15	23124851	23125479	H1_polyA+.59973	0	.	23124851	23125479	0	1	628	0
chr15	23125050	23125734	MIP101.35599	0	.	23125050	23125734	0	1	684	0
chr15	23125585	23127333	H1_polyA+.59974	0	.	23125585	23127333	0	1	1748	0
chr15	23126102	23127374	B_Cells_Pritchard.1800897	0	.	23126102	23127374	0	1	1272	0
chr15	23126225	23127369	melanoma_Garraway_short_term_cultures.34742	0	.	23126225	23127369	0	1	1144	0
chr15	23126237	23127390	B_cells_Cheung.103572	0	.	23126237	23127390	0	1	1153	0
chr15	23126380	23127226	prostate_carcinoma.51299	0	.	23126380	23127226	0	1	846	0
chr15	23126605	23127241	brain_AmbionMAQC.22680	0	.	23126605	23127241	0	1	636	0
chr15	23126892	23127388	CD4_Plagnol_activated.33150	0	.	23126892	23127388	0	1	496	0
chr15	23130862	23132319	ZR751_Thompson.12372	0	.	23130862	23132319	0	1	1457	0
chr15	23131336	23132243	BT20_Thompson.11041	0	.	23131336	23132243	0	1	907	0
chr15	23131503	23132425	MDAMB468_Thompson.12508	0	.	23131503	23132425	0	1	922	0
chr15	23131658	23132388	MCF10A_Thompson.11154	0	.	23131658	23132388	0	1	730	0
chr15	23132039	23132367	A549_Myers.40938	0	.	23132039	23132367	0	1	328	0
chr15	23243941	23244273	B_cells_Cheung.103609	0	.	23243941	23244273	0	1	332	0
chr15	23264141	23265647	B_cells_Cheung.103617	0	.	23264141	23265647	0	1	1506	0
chr15	23264414	23265342	B_Cells_Pritchard.1801451	0	.	23264414	23265342	0	1	928	0
chr15	23272338	23273815	REMC_LuminalBreast.52744	0	.	23272338	23273815	0	1	1477	0
chr15	23272802	23274425	REMC_MyoepithelialBreast.49528	0	.	23272802	23274425	0	1	1623	0
chr15	23273541	23273950	REMC_BreastStem.26683	0	.	23273541	23273950	0	1	409	0
chr15	23276294	23276942	B_cells_Cheung.103621	0	.	23276294	23276942	0	1	648	0
chr15	23282118	23283149	REMC_LuminalBreast.52747	0	.	23282118	23283149	0	1	1031	0
chr15	23282431	23283475	REMC_MyoepithelialBreast.49530	0	.	23282431	23283475	0	1	1044	0
chr15	23285924	23287485	REMC_LuminalBreast.52749	0	.	23285924	23287485	0	1	1561	0
chr15	23318793	23319411	B_Cells_Pritchard.1801697	0	.	23318793	23319411	0	1	618	0
chr15	23318794	23319184	B_cells_Cheung.103628	0	.	23318794	23319184	0	1	390	0
chr15	23321621	23322736	REMC_LuminalBreast.52753	0	.	23321621	23322736	0	1	1115	0
chr15	23324555	23325393	prostate_carcinoma.51336	0	.	23324555	23325393	0	1	838	0
chr15	23347056	23347804	B_cells_Cheung.103634	0	.	23347056	23347804	0	1	748	0
chr15	23419095	23419752	melanoma_Garraway_short_term_cultures.34750	0	.	23419095	23419752	0	1	657	0
chr15	23468596	23470665	HIT000016660	0	+	23468596	23470665	0	1	2069	0
chr15	23878746	23879727	REMC_MyoepithelialBreast.49537	0	.	23878746	23879727	0	1	981	0
chr15	23879081	23879580	B_Cells_Pritchard.1803305	0	.	23879081	23879580	0	1	499	0
chr15	23917735	23918341	B_Cells_Pritchard.1803375	0	.	23917735	23918341	0	1	606	0
chr15	23921441	23936237	Rinn_00023325	0	+	23921441	23936237	0	5	112,81,71,1653,85	0,6467,7088,7681,14711
chr15	23930026	23936234	Rinn_00023888	0	+	23930026	23936234	0	2	749,82	0,6126
chr15	24208980	24209550	melanoma_Garraway_short_term_cultures.34780	0	.	24208980	24209550	0	1	570	0
chr15	24571590	24572363	H1_polyA+.60064	0	.	24571590	24572363	0	1	773	0
chr15	24575770	24576118	A549_Myers.41011	0	.	24575770	24576118	0	1	348	0
chr15	24635067	24635466	A549_Myers.41013	0	.	24635067	24635466	0	1	399	0
chr15	24795613	24795930	A549_Myers.41020	0	.	24795613	24795930	0	1	317	0
chr15	25459220	25460721	brain_AmbionMAQC.22589	0	.	25459220	25460721	0	1	1501	0
chr15	25459263	25460702	prostate_carcinoma.51439	0	.	25459263	25460702	0	1	1439	0
chr15	25590637	25591584	melanoma_Garraway_short_term_cultures.34799	0	.	25590637	25591584	0	1	947	0
chr15	25591733	25598654	melanoma_Garraway_short_term_cultures.34800	0	-	25591733	25598654	0	2	105,960	0,5961
chr15	25600070	25603533	melanoma_Garraway_short_term_cultures.34802	0	.	25600070	25603533	0	1	3463	0
chr15	25620406	25620980	A549_Myers.41048	0	.	25620406	25620980	0	1	574	0
chr15	26019262	26019582	A549_Myers.41089	0	.	26019262	26019582	0	1	320	0
chr15	26023946	26024856	A549_Myers.41091	0	+	26023946	26024856	0	2	238,161	0,749
chr15	26024358	26024856	A549_Myers.41090	0	.	26024358	26024856	0	1	498	0
chr15	26297384	26301804	HIT000497437_01	0	+	26297384	26301804	0	7	166,120,60,81,360,85,46	0,1863,2568,2811,3746,4194,4374
chr15	26769066	26770621	kidney_Gilad.45900	0	-	26769066	26770621	0	3	356,103,309	0,716,1246
chr15	26769066	26769939	kidney_Gilad.45902	0	+	26769066	26769939	0	2	326,258	0,615
chr15	26769066	26770086	liver_polyA+.71175	0	+	26769066	26770086	0	2	326,405	0,615
chr15	26769066	26770621	liver_polyA+.71173	0	-	26769066	26770621	0	3	356,103,309	0,716,1246
chr15	26769168	26769706	prostate_carcinoma.51479	0	.	26769168	26769706	0	1	538	0
chr15	26770136	26770516	B_Cells_Pritchard.1808409	0	.	26770136	26770516	0	1	380	0
chr15	26886408	26886780	K562.23229	0	.	26886408	26886780	0	1	372	0
chr15	26886420	26892769	XR_078490	0	-	26886420	26892769	0	8	1186,143,60,108,95,52,130,85	0,1499,1970,3294,3483,3665,4829,6264
chr15	26886420	26892769	XR_078811	0	-	26886420	26892769	0	10	565,277,64,143,60,284,52,31,130,85	0,849,1143,1499,1970,3294,3665,3985,4829,6264
chr15	26887920	26892733	pHIT000114037	0	-	26887920	26892733	0	8	142,59,107,94,51,30,129,48	0,471,1795,1984,2166,2486,3330,4765
chr15	26889147	26892862	HIT000496862	0	-	26889147	26892862	0	6	675,94,51,30,129,177	0,757,939,1259,2103,3538
chr15	26896140	26896488	HepG2_Caltech_ENCODE.18830	0	.	26896140	26896488	0	1	348	0
chr15	26998519	26999041	H1_polyA+.60265	0	.	26998519	26999041	0	1	522	0
chr15	26998709	26999071	A549_Myers.41112	0	.	26998709	26999071	0	1	362	0
chr15	27656843	27657990	H1_polyA+.60247	0	.	27656843	27657990	0	1	1147	0
chr15	27693171	27693871	A549_Myers.41163	0	.	27693171	27693871	0	1	700	0
chr15	27693212	27693809	pHIT000114041	0	+	27693212	27693809	0	1	597	0
chr15	27710420	27711125	H1_polyA+.60255	0	.	27710420	27711125	0	1	705	0
chr15	27711916	27712858	H1_polyA+.60256	0	.	27711916	27712858	0	1	942	0
chr15	27713229	27714428	H1_polyA+.60257	0	.	27713229	27714428	0	1	1199	0
chr15	27715489	27758671	XR_078492	0	+	27715489	27758671	0	10	303,80,61,25,74,214,182,68,620,2001	0,2873,3378,22744,28197,28837,32178,37978,38913,41181
chr15	27715489	27758671	XR_079352	0	+	27715489	27758671	0	8	343,61,25,74,182,68,620,2001	0,3378,22744,28197,32178,37978,38913,41181
chr15	27715489	27758671	XR_078812	0	+	27715489	27758671	0	9	343,61,25,74,214,182,68,620,2001	0,3378,22744,28197,28837,32178,37978,38913,41181
chr15	27715551	27716008	A549_Myers.41165	0	.	27715551	27716008	0	1	457	0
chr15	27715596	27717853	H1_polyA+.60258	0	.	27715596	27717853	0	1	2257	0
chr15	27727104	27728192	H1_polyA+.60260	0	.	27727104	27728192	0	1	1088	0
chr15	27750064	27751407	REMC_LuminalBreast.52830	0	.	27750064	27751407	0	1	1343	0
chr15	27750075	27750987	REMC_MyoepithelialBreast.49617	0	.	27750075	27750987	0	1	912	0
chr15	27754227	27755007	B_Cells_Pritchard.1810609	0	.	27754227	27755007	0	1	780	0
chr15	27754355	27758682	liver_polyA+.71198	0	+	27754355	27758682	0	2	667,2011	0,2316
chr15	27754355	27755036	liver_polyA+.71199	0	.	27754355	27755036	0	1	681	0
chr15	27754427	27764280	H1_polyA+.60263	0	.	27754427	27764280	0	1	9853	0
chr15	27754471	27755313	MDAMB231_Thompson.11555	0	.	27754471	27755313	0	1	842	0
chr15	27754477	27755103	H9_polyA+.23390	0	.	27754477	27755103	0	1	626	0
chr15	27754477	27756806	T47D_Burge_Thompson.14830	0	+	27754477	27756806	0	2	545,135	0,2194
chr15	27754478	27755010	B_cells_Cheung.103856	0	.	27754478	27755010	0	1	532	0
chr15	27754483	27755013	MCF7_Burge_Thompson.15458	0	.	27754483	27755013	0	1	530	0
chr15	27754485	27758659	HIT000020916	0	+	27754485	27758659	0	2	537,1988	0,2186
chr15	27754489	27755045	brain_AmbionMAQC.22626	0	.	27754489	27755045	0	1	556	0
chr15	27754493	27755010	melanoma_Garraway_short_term_cultures.34860	0	.	27754493	27755010	0	1	517	0
chr15	27754553	27755076	prostate_carcinoma.51516	0	.	27754553	27755076	0	1	523	0
chr15	27756116	27758488	REMC_MyoepithelialBreast.49619	0	.	27756116	27758488	0	1	2372	0
chr15	27756313	27758288	REMC_LuminalBreast.52831	0	.	27756313	27758288	0	1	1975	0
chr15	27756356	27757492	melanoma_Garraway_short_term_cultures.34861	0	.	27756356	27757492	0	1	1136	0
chr15	27756661	27759094	MDAMB231_Thompson.11556	0	.	27756661	27759094	0	1	2433	0
chr15	27757323	27757853	H9_polyA+.23392	0	.	27757323	27757853	0	1	530	0
chr15	27757489	27758062	brain_AmbionMAQC.22628	0	.	27757489	27758062	0	1	573	0
chr15	27759400	27763792	REMC_MyoepithelialBreast.49620	0	.	27759400	27763792	0	1	4392	0
chr15	27759550	27762290	MDAMB231_Thompson.11557	0	.	27759550	27762290	0	1	2740	0
chr15	27760114	27761963	REMC_LuminalBreast.52833	0	.	27760114	27761963	0	1	1849	0
chr15	27762260	27764419	REMC_LuminalBreast.52834	0	.	27762260	27764419	0	1	2159	0
chr15	27762341	27763383	MDAMB231_Thompson.11554	0	.	27762341	27763383	0	1	1042	0
chr15	27763952	27766888	REMC_MyoepithelialBreast.49621	0	-	27763952	27766888	0	2	744,1928	0,1008
chr15	27763952	27766888	REMC_MyoepithelialBreast.49622	0	.	27763952	27766888	0	1	2936	0
chr15	27764543	27766172	REMC_LuminalBreast.52835	0	.	27764543	27766172	0	1	1629	0
chr15	27765266	27766155	H1_polyA+.60264	0	.	27765266	27766155	0	1	889	0
chr15	27766295	27769776	REMC_LuminalBreast.52836	0	.	27766295	27769776	0	1	3481	0
chr15	27768652	27769911	REMC_MyoepithelialBreast.49624	0	.	27768652	27769911	0	1	1259	0
chr15	27769927	27776847	REMC_LuminalBreast.52837	0	.	27769927	27776847	0	1	6920	0
chr15	27770510	27776018	REMC_MyoepithelialBreast.49625	0	.	27770510	27776018	0	1	5508	0
chr15	27776896	27777249	A549_Myers.41201	0	.	27776896	27777249	0	1	353	0
chr15	28132436	28152559	ENST00000421447	0	-	28132436	28152559	0	4	97,65,86,445	0,15159,15427,19678
chr15	28423781	28427731	HIT000249563	0	-	28423781	28427731	0	1	3950	0
chr15	28423792	28427731	XR_015162	0	-	28423792	28427731	0	2	1756,2182	0,1757
chr15	28564097	28569062	B_Cells_Pritchard.1811627	0	+	28564097	28569062	0	2	84,300	0,4665
chr15	28599074	28604541	HIT000015270	0	-	28599074	28604541	0	1	5467	0
chr15	28848826	28852488	HIT000019951	0	-	28848826	28852488	0	1	3662	0
chr15	28848848	28849206	B_cells_Cheung.104026	0	.	28848848	28849206	0	1	358	0
chr15	28848848	28849209	MIP101.35777	0	.	28848848	28849209	0	1	361	0
chr15	28848852	28849174	BT20_Thompson.11090	0	.	28848852	28849174	0	1	322	0
chr15	28848853	28852477	B_Cells_Pritchard.1812465	0	+	28848853	28852477	0	4	262,766,1370,566	0,914,1680,3058
chr15	28848863	28849186	T47D_Burge_Thompson.14840	0	.	28848863	28849186	0	1	323	0
chr15	28849314	28852482	H1_polyA+.60432	0	.	28849314	28852482	0	1	3168	0
chr15	28849339	28852495	B_cells_Cheung.104027	0	.	28849339	28852495	0	1	3156	0
chr15	28849517	28850702	HeLa_polyA+_Chen.18620	0	.	28849517	28850702	0	1	1185	0
chr15	28849737	28852488	HIT000017150	0	-	28849737	28852488	0	1	2751	0
chr15	28849762	28852077	HepG2_Caltech_ENCODE.18859	0	.	28849762	28852077	0	1	2315	0
chr15	28849781	28851337	H9_polyA+.23409	0	.	28849781	28851337	0	1	1556	0
chr15	28849785	28852474	melanoma_Garraway_short_term_cultures.34917	0	.	28849785	28852474	0	1	2689	0
chr15	28849786	28851353	T47D_Burge_Thompson.14841	0	.	28849786	28851353	0	1	1567	0
chr15	28849795	28851353	MIP101.35784	0	.	28849795	28851353	0	1	1558	0
chr15	28849801	28850658	MCF10A_Thompson.11227	0	.	28849801	28850658	0	1	857	0
chr15	28849805	28850700	A549_Myers.41186	0	.	28849805	28850700	0	1	895	0
chr15	28850014	28850696	MCF7_Burge_Thompson.15472	0	.	28850014	28850696	0	1	682	0
chr15	28850024	28850677	MDAMB468_Thompson.12548	0	.	28850024	28850677	0	1	653	0
chr15	28850025	28851346	BT474_Burge_Thompson.17198	0	.	28850025	28851346	0	1	1321	0
chr15	28850030	28850642	CD4_Plagnol_resting.32335	0	.	28850030	28850642	0	1	612	0
chr15	28850032	28850711	ZR751_Thompson.12425	0	.	28850032	28850711	0	1	679	0
chr15	28850033	28850744	MDAMB231_Thompson.11567	0	.	28850033	28850744	0	1	711	0
chr15	28850034	28850760	BT20_Thompson.11091	0	.	28850034	28850760	0	1	726	0
chr15	28850100	28859546	B_Cells_Pritchard.1812467	0	-	28850100	28859546	0	2	1615,72	0,9374
chr15	28850446	28851317	prostate_carcinoma.51559	0	.	28850446	28851317	0	1	871	0
chr15	28851474	28852189	MDAMB468_Thompson.12551	0	.	28851474	28852189	0	1	715	0
chr15	28851490	28852615	HeLa_polyA+_Chen.18619	0	.	28851490	28852615	0	1	1125	0
chr15	28851498	28852136	H9_polyA+.23410	0	.	28851498	28852136	0	1	638	0
chr15	28851515	28852079	BT20_Thompson.11092	0	.	28851515	28852079	0	1	564	0
chr15	28851524	28852079	BT474_Burge_Thompson.17197	0	.	28851524	28852079	0	1	555	0
chr15	28851524	28852100	ZR751_Thompson.12426	0	.	28851524	28852100	0	1	576	0
chr15	28851532	28851998	T47D_Burge_Thompson.14842	0	.	28851532	28851998	0	1	466	0
chr15	28851533	28852007	MDAMB231_Thompson.11565	0	.	28851533	28852007	0	1	474	0
chr15	28851541	28852107	REMC_LuminalBreast.52878	0	.	28851541	28852107	0	1	566	0
chr15	28871277	28872006	H1_polyA+.60437	0	.	28871277	28872006	0	1	729	0
chr15	28893669	28894229	MIP101.35791	0	.	28893669	28894229	0	1	560	0
chr15	28904030	28918366	B_Cells_Pritchard.1812259	0	-	28904030	28918366	0	5	681,112,803,1196,253	0,3157,8249,9707,14083
chr15	28904149	28905796	REMC_LuminalBreast.52879	0	.	28904149	28905796	0	1	1647	0
chr15	28907091	28912458	K562.23245	0	+	28907091	28912458	0	2	258,173	0,5194
chr15	28912053	28914976	REMC_LuminalBreast.52881	0	.	28912053	28914976	0	1	2923	0
chr15	28912191	28914900	melanoma_Garraway_short_term_cultures.34925	0	.	28912191	28914900	0	1	2709	0
chr15	28912212	28912856	B_cells_Cheung.104035	0	.	28912212	28912856	0	1	644	0
chr15	28913000	28914916	H1_polyA+.60444	0	.	28913000	28914916	0	1	1916	0
chr15	28913018	28913629	B_cells_Cheung.104036	0	.	28913018	28913629	0	1	611	0
chr15	28913711	28914745	B_cells_Cheung.104037	0	.	28913711	28914745	0	1	1034	0
chr15	28919114	28920187	melanoma_Garraway_short_term_cultures.34929	0	.	28919114	28920187	0	1	1073	0
chr15	28919125	28920544	REMC_LuminalBreast.52882	0	.	28919125	28920544	0	1	1419	0
chr15	28919133	28920122	B_Cells_Pritchard.1812345	0	.	28919133	28920122	0	1	989	0
chr15	28919226	28920180	H1_polyA+.60445	0	.	28919226	28920180	0	1	954	0
chr15	28919231	28919870	B_cells_Cheung.104043	0	.	28919231	28919870	0	1	639	0
chr15	28922772	28928114	melanoma_Garraway_short_term_cultures.34934	0	.	28922772	28928114	0	1	5342	0
chr15	28922886	28926411	REMC_LuminalBreast.52884	0	.	28922886	28926411	0	1	3525	0
chr15	28923818	28925368	H1_polyA+.60448	0	.	28923818	28925368	0	1	1550	0
chr15	28923982	28928082	B_cells_Cheung.104073	0	.	28923982	28928082	0	1	4100	0
chr15	28926465	28926943	H1_polyA+.60449	0	.	28926465	28926943	0	1	478	0
chr15	28926578	28928253	REMC_LuminalBreast.52885	0	.	28926578	28928253	0	1	1675	0
chr15	28936124	28937356	melanoma_Garraway_short_term_cultures.34936	0	.	28936124	28937356	0	1	1232	0
chr15	28942688	28943319	B_Cells_Pritchard.1812441	0	.	28942688	28943319	0	1	631	0
chr15	28942707	28943302	melanoma_Garraway_short_term_cultures.34940	0	.	28942707	28943302	0	1	595	0
chr15	28958651	28965996	B_Cells_Pritchard.1813213	0	+	28958651	28965996	0	2	1086,1086	0,6259
chr15	28961532	28962422	H1_polyA+.60458	0	.	28961532	28962422	0	1	890	0
chr15	28961615	28962315	B_cells_Cheung.104092	0	.	28961615	28962315	0	1	700	0
chr15	28961760	28962789	pHIT000114052	0	-	28961760	28962789	0	2	403,206	0,823
chr15	28962387	28963088	B_cells_Cheung.104093	0	.	28962387	28963088	0	1	701	0
chr15	28964548	28967217	REMC_LuminalBreast.52899	0	.	28964548	28967217	0	1	2669	0
chr15	28964621	28965793	melanoma_Garraway_short_term_cultures.34948	0	.	28964621	28965793	0	1	1172	0
chr15	28964953	28965788	MeWo_Garraway.18507	0	.	28964953	28965788	0	1	835	0
chr15	28965231	28965827	B_cells_Cheung.104094	0	.	28965231	28965827	0	1	596	0
chr15	28966088	28967717	B_cells_Cheung.104096	0	.	28966088	28967717	0	1	1629	0
chr15	28966102	28969151	melanoma_Garraway_short_term_cultures.34949	0	.	28966102	28969151	0	1	3049	0
chr15	28966105	28967179	H1_polyA+.60459	0	.	28966105	28967179	0	1	1074	0
chr15	28974656	28976984	B_cells_Cheung.104103	0	.	28974656	28976984	0	1	2328	0
chr15	28975859	28976232	CD4_Plagnol_resting.32338	0	.	28975859	28976232	0	1	373	0
chr15	29311801	29312275	B_cells_Cheung.104410	0	.	29311801	29312275	0	1	474	0
chr15	29312441	29314625	B_cells_Cheung.104411	0	.	29312441	29314625	0	1	2184	0
chr15	29335722	29336609	B_cells_Cheung.104143	0	.	29335722	29336609	0	1	887	0
chr15	29343247	29343588	A549_Myers.41247	0	.	29343247	29343588	0	1	341	0
chr15	29350206	29350627	A549_Myers.41249	0	.	29350206	29350627	0	1	421	0
chr15	29358175	29358705	A549_Myers.41252	0	.	29358175	29358705	0	1	530	0
chr15	29376243	29376882	A549_Myers.41254	0	.	29376243	29376882	0	1	639	0
chr15	29379139	29379751	B_Cells_Pritchard.1813527	0	.	29379139	29379751	0	1	612	0
chr15	29379280	29380008	BT474_Burge_Thompson.17200	0	.	29379280	29380008	0	1	728	0
chr15	29379869	29380276	A549_Myers.41255	0	.	29379869	29380276	0	1	407	0
chr15	29380547	29380897	B_Cells_Pritchard.1813533	0	.	29380547	29380897	0	1	350	0
chr15	29380955	29381303	A549_Myers.41256	0	.	29380955	29381303	0	1	348	0
chr15	29381806	29382355	A549_Myers.41257	0	.	29381806	29382355	0	1	549	0
chr15	29381835	29382409	B_Cells_Pritchard.1813539	0	.	29381835	29382409	0	1	574	0
chr15	29386844	29387164	A549_Myers.41259	0	.	29386844	29387164	0	1	320	0
chr15	29386847	29387327	B_Cells_Pritchard.1813563	0	.	29386847	29387327	0	1	480	0
chr15	29387478	29388202	B_Cells_Pritchard.1813565	0	.	29387478	29388202	0	1	724	0
chr15	29391130	29391483	B_Cells_Pritchard.1813581	0	.	29391130	29391483	0	1	353	0
chr15	29391389	29391838	B_cells_Cheung.104145	0	.	29391389	29391838	0	1	449	0
chr15	29391596	29391905	B_Cells_Pritchard.1813583	0	.	29391596	29391905	0	1	309	0
chr15	29391930	29392468	B_cells_Cheung.104146	0	.	29391930	29392468	0	1	538	0
chr15	29392009	29392373	B_Cells_Pritchard.1813585	0	.	29392009	29392373	0	1	364	0
chr15	29398205	29400480	B_cells_Cheung.104152	0	.	29398205	29400480	0	1	2275	0
chr15	29399782	29400481	B_Cells_Pritchard.1813603	0	.	29399782	29400481	0	1	699	0
chr15	29400080	29400455	CD4_Plagnol_resting.32346	0	.	29400080	29400455	0	1	375	0
chr15	29458439	29458974	B_cells_Cheung.104235	0	.	29458439	29458974	0	1	535	0
chr15	29459037	29461960	B_cells_Cheung.104236	0	.	29459037	29461960	0	1	2923	0
chr15	29460677	29462455	CD4_Plagnol_activated.33253	0	.	29460677	29462455	0	1	1778	0
chr15	29461143	29463260	REMC_LuminalBreast.52933	0	.	29461143	29463260	0	1	2117	0
chr15	29461296	29463100	CD4_Plagnol_resting.32349	0	.	29461296	29463100	0	1	1804	0
chr15	29461426	29463149	REMC_MyoepithelialBreast.49660	0	.	29461426	29463149	0	1	1723	0
chr15	29461491	29461801	A549_Myers.42274	0	.	29461491	29461801	0	1	310	0
chr15	29461794	29463174	REMC_BreastStem.26894	0	.	29461794	29463174	0	1	1380	0
chr15	29462184	29462580	B_Cells_Pritchard.1833509	0	+	29462184	29462580	0	1	396	0
chr15	29462529	29463104	CD4_Plagnol_activated.33255	0	.	29462529	29463104	0	1	575	0
chr15	29462600	29463146	B_cells_Cheung.104238	0	.	29462600	29463146	0	1	546	0
chr15	29463426	29470140	REMC_MyoepithelialBreast.49661	0	.	29463426	29470140	0	1	6714	0
chr15	29463790	29468201	REMC_LuminalBreast.52934	0	.	29463790	29468201	0	1	4411	0
chr15	29465450	29467253	REMC_BreastStem.26896	0	.	29465450	29467253	0	1	1803	0
chr15	29471234	29472125	A549_Myers.42276	0	.	29471234	29472125	0	1	891	0
chr15	29471335	29472191	REMC_BreastStem.26899	0	.	29471335	29472191	0	1	856	0
chr15	29471425	29473687	prostate_carcinoma.51612	0	.	29471425	29473687	0	1	2262	0
chr15	29472287	29472655	B_cells_Cheung.104243	0	.	29472287	29472655	0	1	368	0
chr15	29472304	29473175	prostate_normal.30154	0	.	29472304	29473175	0	1	871	0
chr15	29472336	29484224	Rinn_00023185	0	+	29472336	29484224	0	4	414,117,482,763	0,733,10585,11125
chr15	29472336	29484224	Rinn_00023259	0	+	29472336	29484224	0	4	414,117,488,757	0,733,10585,11131
chr15	29472336	29483403	Rinn_00023218	0	+	29472336	29483403	0	3	414,117,482	0,733,10585
chr15	29472337	29484224	HIT000018625	0	+	29472337	29484224	0	4	413,116,481,762	0,733,10585,11125
chr15	29472337	29484224	ENST00000500533	0	+	29472337	29484224	0	4	413,116,487,756	0,733,10585,11131
chr15	29472350	29472696	REMC_BreastStem.26900	0	.	29472350	29472696	0	1	346	0
chr15	29472382	29484338	brain_AmbionMAQC.22705	0	+	29472382	29484338	0	2	804,1416	0,10540
chr15	29472401	29472823	A549_Myers.42277	0	.	29472401	29472823	0	1	422	0
chr15	29472407	29473149	CD4_Plagnol_activated.33259	0	.	29472407	29473149	0	1	742	0
chr15	29472759	29474339	B_cells_Cheung.104244	0	.	29472759	29474339	0	1	1580	0
chr15	29473083	29473602	REMC_LuminalBreast.52936	0	.	29473083	29473602	0	1	519	0
chr15	29476770	29477101	A549_Myers.41282	0	.	29476770	29477101	0	1	331	0
chr15	29476898	29478358	REMC_LuminalBreast.52938	0	.	29476898	29478358	0	1	1460	0
chr15	29477883	29478724	A549_Myers.41283	0	.	29477883	29478724	0	1	841	0
chr15	29477959	29478509	brain_AmbionMAQC.22707	0	.	29477959	29478509	0	1	550	0
chr15	29479086	29479985	REMC_LuminalBreast.52939	0	.	29479086	29479985	0	1	899	0
chr15	29480667	29484167	HIT000046925	0	-	29480667	29484167	0	1	3500	0
chr15	29480782	29481961	brain_AmbionMAQC.22708	0	.	29480782	29481961	0	1	1179	0
chr15	29481032	29482103	B_Cells_Pritchard.1813795	0	.	29481032	29482103	0	1	1071	0
chr15	29482385	29484153	REMC_LuminalBreast.52940	0	.	29482385	29484153	0	1	1768	0
chr15	29482765	29483871	B_Cells_Pritchard.1813801	0	.	29482765	29483871	0	1	1106	0
chr15	29483313	29483949	B_cells_Cheung.104247	0	.	29483313	29483949	0	1	636	0
chr15	29487526	29490348	REMC_BreastStem.26902	0	.	29487526	29490348	0	1	2822	0
chr15	29487762	29489346	REMC_LuminalBreast.52943	0	.	29487762	29489346	0	1	1584	0
chr15	29488565	29490056	REMC_MyoepithelialBreast.49662	0	.	29488565	29490056	0	1	1491	0
chr15	29488877	29489246	CD4_Plagnol_resting.32373	0	.	29488877	29489246	0	1	369	0
chr15	29488890	29489258	B_cells_Cheung.104248	0	.	29488890	29489258	0	1	368	0
chr15	29491030	29492650	REMC_BreastStem.26903	0	.	29491030	29492650	0	1	1620	0
chr15	29512962	29513428	A549_Myers.41288	0	.	29512962	29513428	0	1	466	0
chr15	29514522	29515358	B_Cells_Pritchard.1813927	0	.	29514522	29515358	0	1	836	0
chr15	29514669	29515067	CD4_Snyder.40988	0	.	29514669	29515067	0	1	398	0
chr15	29514810	29515330	REMC_BreastStem.26909	0	.	29514810	29515330	0	1	520	0
chr15	29519919	29520541	B_Cells_Pritchard.1813949	0	.	29519919	29520541	0	1	622	0
chr15	29528940	29529242	B_cells_Cheung.104254	0	.	29528940	29529242	0	1	302	0
chr15	29529907	29530230	B_cells_Cheung.104255	0	.	29529907	29530230	0	1	323	0
chr15	29531775	29544190	B_Cells_Pritchard.1813967	0	-	29531775	29544190	0	2	1668,1058	0,11357
chr15	29533030	29533476	REMC_MyoepithelialBreast.49665	0	.	29533030	29533476	0	1	446	0
chr15	29536195	29536504	A549_Myers.41295	0	.	29536195	29536504	0	1	309	0
chr15	29536233	29536539	B_cells_Cheung.104259	0	.	29536233	29536539	0	1	306	0
chr15	29543343	29544790	B_cells_Cheung.104262	0	.	29543343	29544790	0	1	1447	0
chr15	29544147	29544505	A549_Myers.41296	0	.	29544147	29544505	0	1	358	0
chr15	29544363	29545809	B_Cells_Pritchard.1814099	0	.	29544363	29545809	0	1	1446	0
chr15	29544700	29545777	CD4_Plagnol_activated.33263	0	.	29544700	29545777	0	1	1077	0
chr15	29544990	29545520	A549_Myers.41297	0	.	29544990	29545520	0	1	530	0
chr15	29552410	29552886	B_Cells_Pritchard.1814133	0	.	29552410	29552886	0	1	476	0
chr15	29554898	29557997	HIT000019837	0	-	29554898	29557997	0	1	3099	0
chr15	29554932	29559050	prostate_carcinoma.51616	0	.	29554932	29559050	0	1	4118	0
chr15	29556378	29557119	CD4_Plagnol_activated.33264	0	.	29556378	29557119	0	1	741	0
chr15	29557263	29558767	REMC_BreastStem.26758	0	.	29557263	29558767	0	1	1504	0
chr15	29557391	29558823	REMC_LuminalBreast.52950	0	.	29557391	29558823	0	1	1432	0
chr15	29559850	29560317	H9_polyA+.23423	0	.	29559850	29560317	0	1	467	0
chr15	30054855	30055760	A549_Myers.41321	0	.	30054855	30055760	0	1	905	0
chr15	30054874	30057728	HIT000021905	0	-	30054874	30057728	0	1	2854	0
chr15	30056286	30056602	A549_Myers.41322	0	.	30056286	30056602	0	1	316	0
chr15	30056719	30057147	A549_Myers.41323	0	.	30056719	30057147	0	1	428	0
chr15	30262042	30265961	XR_078500	0	+	30262042	30265961	0	1	3919	0
chr15	30597276	30598017	REMC_LuminalBreast.53040	0	.	30597276	30598017	0	1	741	0
chr15	30597510	30598018	HeLa_polyA+_Chen.18633	0	.	30597510	30598018	0	1	508	0
chr15	30597535	30598022	REMC_MyoepithelialBreast.49773	0	.	30597535	30598022	0	1	487	0
chr15	30597610	30598024	REMC_BreastStem.26772	0	.	30597610	30598024	0	1	414	0
chr15	30597618	30598005	HeLa_polyA-_Chen.10011	0	.	30597618	30598005	0	1	387	0
chr15	30616246	30660118	HIT000094963	0	+	30616246	30660118	0	3	253,84,918	0,39163,42954
chr15	30823583	30825616	REMC_BreastStem.26815	0	.	30823583	30825616	0	1	2033	0
chr15	30830378	30831738	REMC_BreastStem.26818	0	.	30830378	30831738	0	1	1360	0
chr15	30839886	30842463	REMC_BreastStem.26822	0	.	30839886	30842463	0	1	2577	0
chr15	30839926	30841713	melanoma_Garraway_short_term_cultures.35057	0	.	30839926	30841713	0	1	1787	0
chr15	32149494	32150211	B_cells_Cheung.104391	0	.	32149494	32150211	0	1	717	0
chr15	32156343	32156671	liver_polyA+.71350	0	.	32156343	32156671	0	1	328	0
chr15	32156343	32156659	kidney_Gilad.45992	0	.	32156343	32156659	0	1	316	0
chr15	32156349	32157310	B_cells_Cheung.104398	0	.	32156349	32157310	0	1	961	0
chr15	32185880	32187123	HepG2_Caltech_ENCODE.18923	0	.	32185880	32187123	0	1	1243	0
chr15	32185900	32187131	melanoma_Garraway_short_term_cultures.35251	0	.	32185900	32187131	0	1	1231	0
chr15	32185934	32186635	ZR751_Thompson.12466	0	.	32185934	32186635	0	1	701	0
chr15	32187728	32188936	REMC_LuminalBreast.53117	0	.	32187728	32188936	0	1	1208	0
chr15	32198706	32203003	REMC_LuminalBreast.53121	0	.	32198706	32203003	0	1	4297	0
chr15	32199987	32200893	REMC_BreastStem.26838	0	.	32199987	32200893	0	1	906	0
chr15	32203163	32215912	REMC_LuminalBreast.53122	0	.	32203163	32215912	0	1	12749	0
chr15	32204041	32204969	MIP101.36156	0	.	32204041	32204969	0	1	928	0
chr15	32204404	32204967	prostate_carcinoma.51722	0	.	32204404	32204967	0	1	563	0
chr15	32206851	32215852	H1_polyA+.60619	0	.	32206851	32215852	0	1	9001	0
chr15	32210275	32214269	REMC_MyoepithelialBreast.50146	0	.	32210275	32214269	0	1	3994	0
chr15	32210604	32213056	B_cells_Cheung.104432	0	.	32210604	32213056	0	1	2452	0
chr15	32210827	32211944	B_Cells_Pritchard.1819807	0	+	32210827	32211944	0	2	214,837	0,280
chr15	32211112	32211968	MeWo_Garraway.18551	0	.	32211112	32211968	0	1	856	0
chr15	32211361	32212183	melanoma_Garraway_short_term_cultures.35254	0	.	32211361	32212183	0	1	822	0
chr15	32211367	32212006	prostate_normal.30188	0	.	32211367	32212006	0	1	639	0
chr15	32217220	32217533	CD4_Plagnol_resting.32444	0	.	32217220	32217533	0	1	313	0
chr15	32449229	32450240	H1_polyA+.60673	0	.	32449229	32450240	0	1	1011	0
chr15	32449677	32450520	melanoma_Garraway_short_term_cultures.35291	0	.	32449677	32450520	0	1	843	0
chr15	32452920	32453990	REMC_MyoepithelialBreast.49890	0	.	32452920	32453990	0	1	1070	0
chr15	32453012	32453504	brain_AmbionMAQC.22801	0	.	32453012	32453504	0	1	492	0
chr15	32453172	32453710	melanoma_Garraway_short_term_cultures.35292	0	.	32453172	32453710	0	1	538	0
chr15	32453563	32453892	brain_AmbionMAQC.22800	0	.	32453563	32453892	0	1	329	0
chr15	32494939	32499766	HIT000306974	0	-	32494939	32499766	0	1	4827	0
chr15	32502392	32517354	pHIT000114088	0	-	32502392	32517354	0	6	154,90,138,149,142,86	0,5715,6630,10573,11900,14876
chr15	32502392	32517354	pHIT000024881	0	-	32502392	32517354	0	7	154,90,138,78,149,142,86	0,5715,6630,9102,10573,11900,14876
chr15	32502392	32517354	pHIT000088004	0	-	32502392	32517354	0	8	154,90,138,78,149,142,138,86	0,5715,6630,9102,10573,11900,13239,14876
chr15	32502392	32513108	pHIT000114085	0	-	32502392	32513108	0	3	154,90,143	0,5715,10573
chr15	32511623	32512068	B_cells_Cheung.104527	0	.	32511623	32512068	0	1	445	0
chr15	32515648	32516967	B_cells_Cheung.104532	0	.	32515648	32516967	0	1	1319	0
chr15	32517141	32517537	HepG2_Caltech_ENCODE.18946	0	.	32517141	32517537	0	1	396	0
chr15	32569977	32574934	A549_Myers.41442	0	+	32569977	32574934	0	2	75,246	0,4711
chr15	32573912	32575393	pHIT000024884	0	+	32573912	32575393	0	4	96,261,741,237	0,162,456,1244
chr15	32574603	32575068	REMC_LuminalBreast.53244	0	.	32574603	32575068	0	1	465	0
chr15	32574673	32575104	H1_rRNA-depleted_UCSD_REMC.46872	0	.	32574673	32575104	0	1	431	0
chr15	32574674	32575521	H1_polyA+.60685	0	.	32574674	32575521	0	1	847	0
chr15	32574676	32575082	HeLa_polyA+_Chen.18706	0	.	32574676	32575082	0	1	406	0
chr15	32574677	32575068	REMC_MyoepithelialBreast.49896	0	.	32574677	32575068	0	1	391	0
chr15	32574678	32575068	REMC_BreastStem.26862	0	.	32574678	32575068	0	1	390	0
chr15	32574694	32575236	melanoma_Garraway_short_term_cultures.35301	0	.	32574694	32575236	0	1	542	0
chr15	32574698	32575530	B_cells_Cheung.104537	0	.	32574698	32575530	0	1	832	0
chr15	32574701	32575237	brain_AmbionMAQC.22814	0	.	32574701	32575237	0	1	536	0
chr15	32574704	32575067	MCF7_Burge_Thompson.15544	0	.	32574704	32575067	0	1	363	0
chr15	32574712	32575067	BT474_Burge_Thompson.17290	0	.	32574712	32575067	0	1	355	0
chr15	32592895	32594407	B_cells_Cheung.104550	0	.	32592895	32594407	0	1	1512	0
chr15	32662980	32664535	HepG2_Caltech_ENCODE.18955	0	.	32662980	32664535	0	1	1555	0
chr15	32662982	32663337	H1_polyA+.60679	0	.	32662982	32663337	0	1	355	0
chr15	32663029	32663828	A549_Myers.41456	0	.	32663029	32663828	0	1	799	0
chr15	32663894	32664477	prostate_carcinoma.51770	0	.	32663894	32664477	0	1	583	0
chr15	32663902	32664462	A549_Myers.41457	0	.	32663902	32664462	0	1	560	0
chr15	32824921	32827979	K562.23351	0	+	32824921	32827979	0	2	683,169	0,2889
chr15	32887792	32891475	REMC_LuminalBreast.53252	0	.	32887792	32891475	0	1	3683	0
chr15	32889009	32891251	REMC_MyoepithelialBreast.49906	0	.	32889009	32891251	0	1	2242	0
chr15	32895885	32897106	REMC_LuminalBreast.53256	0	.	32895885	32897106	0	1	1221	0
chr15	32912330	32914343	REMC_LuminalBreast.53445	0	.	32912330	32914343	0	1	2013	0
chr15	32916084	32917313	REMC_MyoepithelialBreast.49909	0	.	32916084	32917313	0	1	1229	0
chr15	32917799	32918131	BT474_Burge_Thompson.17302	0	.	32917799	32918131	0	1	332	0
chr15	32929176	32929908	MeWo_Garraway.18608	0	.	32929176	32929908	0	1	732	0
chr15	32929339	32929971	K562.23352	0	.	32929339	32929971	0	1	632	0
chr15	32929414	32929828	pHIT000114093	0	+	32929414	32929828	0	1	414	0
chr15	33094776	33096321	H1_polyA+.60691	0	.	33094776	33096321	0	1	1545	0
chr15	33109224	33109611	H1_polyA+.60696	0	.	33109224	33109611	0	1	387	0
chr15	33119307	33123589	H1_polyA+.60703	0	.	33119307	33123589	0	1	4282	0
chr15	33129536	33130417	H1_polyA+.60709	0	.	33129536	33130417	0	1	881	0
chr15	33130170	33130519	H1_rRNA-depleted_UCSD_REMC.46936	0	.	33130170	33130519	0	1	349	0
chr15	33135849	33142146	H1_polyA+.60707	0	-	33135849	33142146	0	4	584,46,60,556	0,4480,5583,5741
chr15	33135860	33136429	H9_polyA+.23528	0	.	33135860	33136429	0	1	569	0
chr15	33150584	33152232	HIT000019336	0	-	33150584	33152232	0	1	1648	0
chr15	33157392	33158351	REMC_LuminalBreast.53269	0	.	33157392	33158351	0	1	959	0
chr15	33165503	33167972	REMC_LuminalBreast.53271	0	.	33165503	33167972	0	1	2469	0
chr15	33173275	33176261	REMC_LuminalBreast.53273	0	.	33173275	33176261	0	1	2986	0
chr15	33202701	33211092	REMC_LuminalBreast.53283	0	.	33202701	33211092	0	1	8391	0
chr15	33202790	33204746	H1_polyA+.60728	0	.	33202790	33204746	0	1	1956	0
chr15	33203398	33204281	prostate_carcinoma.51824	0	.	33203398	33204281	0	1	883	0
chr15	33240620	33242089	REMC_LuminalBreast.53297	0	.	33240620	33242089	0	1	1469	0
chr15	33241389	33242110	prostate_carcinoma.51826	0	.	33241389	33242110	0	1	721	0
chr15	33256570	33257076	B_cells_Cheung.104612	0	.	33256570	33257076	0	1	506	0
chr15	33259796	33260305	prostate_carcinoma.51827	0	.	33259796	33260305	0	1	509	0
chr15	33267659	33268835	REMC_LuminalBreast.53311	0	.	33267659	33268835	0	1	1176	0
chr15	33278545	33280478	REMC_LuminalBreast.53315	0	.	33278545	33280478	0	1	1933	0
chr15	33279072	33282192	H1_polyA+.60749	0	.	33279072	33282192	0	1	3120	0
chr15	33286669	33293293	REMC_LuminalBreast.53317	0	.	33286669	33293293	0	1	6624	0
chr15	33297111	33301009	REMC_LuminalBreast.53319	0	.	33297111	33301009	0	1	3898	0
chr15	33297166	33298318	H1_polyA+.60756	0	.	33297166	33298318	0	1	1152	0
chr15	33310445	33312478	REMC_LuminalBreast.53324	0	.	33310445	33312478	0	1	2033	0
chr15	33312660	33315795	REMC_LuminalBreast.53325	0	.	33312660	33315795	0	1	3135	0
chr15	33313128	33315730	H1_polyA+.60760	0	.	33313128	33315730	0	1	2602	0
chr15	33316162	33317641	REMC_LuminalBreast.53326	0	.	33316162	33317641	0	1	1479	0
chr15	33316566	33317788	H1_polyA+.60762	0	.	33316566	33317788	0	1	1222	0
chr15	33316804	33317495	HeLa_polyA+_Chen.18718	0	.	33316804	33317495	0	1	691	0
chr15	33316804	33317606	K562.23402	0	.	33316804	33317606	0	1	802	0
chr15	33316804	33317577	HepG2_Caltech_ENCODE.18969	0	.	33316804	33317577	0	1	773	0
chr15	33316817	33317539	B_cells_Cheung.104632	0	.	33316817	33317539	0	1	722	0
chr15	33316988	33317494	melanoma_Garraway_short_term_cultures.35324	0	.	33316988	33317494	0	1	506	0
chr15	33316999	33317535	A549_Myers.41489	0	-	33316999	33317535	0	2	169,153	0,383
chr15	33317296	33317976	B_Cells_Pritchard.1822297	0	.	33317296	33317976	0	1	680	0
chr15	33329526	33331461	REMC_LuminalBreast.53329	0	.	33329526	33331461	0	1	1935	0
chr15	33330630	33331171	B_cells_Cheung.104633	0	.	33330630	33331171	0	1	541	0
chr15	33354906	33357978	REMC_LuminalBreast.53337	0	.	33354906	33357978	0	1	3072	0
chr15	33360976	33363934	B_cells_Cheung.104638	0	.	33360976	33363934	0	1	2958	0
chr15	33361762	33362700	REMC_LuminalBreast.53339	0	.	33361762	33362700	0	1	938	0
chr15	33362211	33362674	H1_polyA+.60771	0	.	33362211	33362674	0	1	463	0
chr15	33362211	33362710	REMC_MyoepithelialBreast.49943	0	.	33362211	33362710	0	1	499	0
chr15	33362476	33379008	HepG2_Caltech_ENCODE.18970	0	-	33362476	33379008	0	2	36,342	0,16190
chr15	33363377	33364787	REMC_LuminalBreast.53340	0	.	33363377	33364787	0	1	1410	0
chr15	33364344	33364770	B_cells_Cheung.104639	0	.	33364344	33364770	0	1	426	0
chr15	33373539	33378962	MIP101.36081	0	-	33373539	33378962	0	2	136,296	0,5127
chr15	33375727	33378966	B_Cells_Pritchard.1822479	0	+	33375727	33378966	0	1	3239	0
chr15	33377091	33381002	H1_polyA+.60778	0	.	33377091	33381002	0	1	3911	0
chr15	33377651	33378491	K562.23403	0	.	33377651	33378491	0	1	840	0
chr15	33377660	33379519	B_cells_Cheung.104651	0	.	33377660	33379519	0	1	1859	0
chr15	33377684	33378491	MIP101.36080	0	.	33377684	33378491	0	1	807	0
chr15	33377691	33378890	REMC_LuminalBreast.53348	0	.	33377691	33378890	0	1	1199	0
chr15	33377799	33378503	HepG2_Caltech_ENCODE.18972	0	.	33377799	33378503	0	1	704	0
chr15	33377802	33378296	liver_polyA+.71498	0	.	33377802	33378296	0	1	494	0
chr15	33377804	33378858	melanoma_Garraway_short_term_cultures.35327	0	.	33377804	33378858	0	1	1054	0
chr15	33377810	33378275	MIP101.36079	0	-	33377810	33378275	0	2	318,88	0,377
chr15	33377814	33378263	MeWo_Garraway.18619	0	.	33377814	33378263	0	1	449	0
chr15	33377838	33378890	REMC_MyoepithelialBreast.49944	0	.	33377838	33378890	0	1	1052	0
chr15	33377873	33378933	pHIT000114098	0	-	33377873	33378933	0	2	436,86	0,974
chr15	33377954	33378512	A549_Myers.41493	0	.	33377954	33378512	0	1	558	0
chr15	33377966	33378465	T47D_Burge_Thompson.14901	0	.	33377966	33378465	0	1	499	0
chr15	33377971	33378474	CD4_Plagnol_activated.33376	0	.	33377971	33378474	0	1	503	0
chr15	33377974	33378444	MCF10A_Thompson.11312	0	.	33377974	33378444	0	1	470	0
chr15	33377974	33378479	BT474_Burge_Thompson.17312	0	.	33377974	33378479	0	1	505	0
chr15	33377975	33378277	MDAMB231_Thompson.11635	0	.	33377975	33378277	0	1	302	0
chr15	33377988	33378456	H9_polyA+.23534	0	+	33377988	33378456	0	2	304,108	0,360
chr15	33378406	33390215	liver_polyA+.71500	0	-	33378406	33390215	0	4	142,175,20,13	0,260,3874,11796
chr15	33378406	33390215	kidney_Gilad.46074	0	-	33378406	33390215	0	4	142,175,20,13	0,260,3874,11796
chr15	33378572	33379008	HepG2_Caltech_ENCODE.18971	0	.	33378572	33379008	0	1	436	0
chr15	33378598	33378981	K562.23404	0	.	33378598	33378981	0	1	383	0
chr15	33378629	33379006	HeLa_polyA+_Chen.18724	0	.	33378629	33379006	0	1	377	0
chr15	33378658	33378978	CD4_Plagnol_activated.33377	0	.	33378658	33378978	0	1	320	0
chr15	33379091	33380294	REMC_LuminalBreast.53349	0	.	33379091	33380294	0	1	1203	0
chr15	33393001	33397250	HIT000048070	0	-	33393001	33397250	0	1	4249	0
chr15	33420644	33422626	B_Cells_Pritchard.1822641	0	.	33420644	33422626	0	1	1982	0
chr15	33434820	33443953	B_Cells_Pritchard.1822673	0	+	33434820	33443953	0	2	85,5677	0,3456
chr15	33441578	33442222	melanoma_Garraway_short_term_cultures.35329	0	.	33441578	33442222	0	1	644	0
chr15	33635804	33637817	H1_polyA+.60803	0	.	33635804	33637817	0	1	2013	0
chr15	33636997	33638109	B_cells_Cheung.104661	0	.	33636997	33638109	0	1	1112	0
chr15	33739132	33739767	prostate_carcinoma.51853	0	.	33739132	33739767	0	1	635	0
chr15	34369702	34370080	H1_polyA+.60807	0	.	34369702	34370080	0	1	378	0
chr15	34956881	34959360	prostate_carcinoma.51876	0	.	34956881	34959360	0	1	2479	0
chr15	35183081	35189161	K562.23478	0	.	35183081	35189161	0	1	6080	0
chr15	35184972	35187608	B_cells_Cheung.104800	0	.	35184972	35187608	0	1	2636	0
chr15	35185111	35187596	B_Cells_Pritchard.1826983	0	.	35185111	35187596	0	1	2485	0
chr15	35186030	35188228	brain_AmbionMAQC.22867	0	.	35186030	35188228	0	1	2198	0
chr15	35186644	35187670	BT20_Thompson.11178	0	.	35186644	35187670	0	1	1026	0
chr15	35800258	35800782	liver_polyA+.71650	0	.	35800258	35800782	0	1	524	0
chr15	36064216	36074290	Rinn_00023352	0	+	36064216	36074290	0	3	112,86,232	0,8677,9842
chr15	36064257	36119974	Rinn_00023220	0	+	36064257	36119974	0	3	71,86,487	0,8636,55230
chr15	36073196	36074556	melanoma_Garraway_short_term_cultures.35355	0	.	36073196	36074556	0	1	1360	0
chr15	36081713	36082795	B_Cells_Pritchard.1828827	0	.	36081713	36082795	0	1	1082	0
chr15	36082238	36082756	B_cells_Cheung.104807	0	.	36082238	36082756	0	1	518	0
chr15	36082814	36083723	B_cells_Cheung.104808	0	.	36082814	36083723	0	1	909	0
chr15	36082899	36083482	B_Cells_Pritchard.1828829	0	.	36082899	36083482	0	1	583	0
chr15	36119283	36120413	B_cells_Cheung.104813	0	.	36119283	36120413	0	1	1130	0
chr15	36137750	36138052	B_cells_Cheung.104815	0	.	36137750	36138052	0	1	302	0
chr15	36150441	36153029	H1_polyA+.60843	0	.	36150441	36153029	0	1	2588	0
chr15	36150784	36152821	MIP101.36142	0	.	36150784	36152821	0	1	2037	0
chr15	36150900	36152778	B_cells_Cheung.104819	0	.	36150900	36152778	0	1	1878	0
chr15	36151064	36152970	prostate_carcinoma.51909	0	.	36151064	36152970	0	1	1906	0
chr15	36151241	36152567	BT474_Burge_Thompson.17330	0	.	36151241	36152567	0	1	1326	0
chr15	36151796	36152724	T47D_Burge_Thompson.14927	0	.	36151796	36152724	0	1	928	0
chr15	36152014	36152565	A549_Myers.41538	0	.	36152014	36152565	0	1	551	0
chr15	36152109	36152495	testes_Burge.27114	0	.	36152109	36152495	0	1	386	0
chr15	36152295	36152930	prostate_normal.30321	0	.	36152295	36152930	0	1	635	0
chr15	36219074	36222569	HIT000095063	0	-	36219074	36222569	0	2	2167,328	0,3167
chr15	36281122	36282766	melanoma_Garraway_short_term_cultures.35370	0	.	36281122	36282766	0	1	1644	0
chr15	36290123	36293048	melanoma_Garraway_short_term_cultures.35375	0	-	36290123	36293048	0	2	238,2483	0,442
chr15	36297414	36298352	melanoma_Garraway_short_term_cultures.35378	0	.	36297414	36298352	0	1	938	0
chr15	36330207	36331000	REMC_MyoepithelialBreast.50008	0	.	36330207	36331000	0	1	793	0
chr15	36330254	36330710	B_cells_Cheung.104820	0	.	36330254	36330710	0	1	456	0
chr15	36330347	36331131	prostate_carcinoma.51910	0	.	36330347	36331131	0	1	784	0
chr15	36453486	36454669	melanoma_Garraway_short_term_cultures.35397	0	.	36453486	36454669	0	1	1183	0
chr15	36454320	36455657	REMC_LuminalBreast.53469	0	.	36454320	36455657	0	1	1337	0
chr15	36455796	36457122	REMC_LuminalBreast.53470	0	.	36455796	36457122	0	1	1326	0
chr15	36456471	36457251	REMC_MyoepithelialBreast.50018	0	.	36456471	36457251	0	1	780	0
chr15	36463038	36464195	REMC_LuminalBreast.53471	0	.	36463038	36464195	0	1	1157	0
chr15	36735843	36736264	B_Cells_Pritchard.1830427	0	.	36735843	36736264	0	1	421	0
chr15	36749261	36749591	B_cells_Cheung.104951	0	.	36749261	36749591	0	1	330	0
chr15	36756178	36758052	B_cells_Cheung.104958	0	.	36756178	36758052	0	1	1874	0
chr15	36756488	36757998	B_Cells_Pritchard.1830471	0	.	36756488	36757998	0	1	1510	0
chr15	36763187	36764017	B_cells_Cheung.104964	0	.	36763187	36764017	0	1	830	0
chr15	36766606	36767142	B_cells_Cheung.104968	0	.	36766606	36767142	0	1	536	0
chr15	36904086	36904561	CD4_Snyder.41191	0	.	36904086	36904561	0	1	475	0
chr15	36927809	36929851	B_cells_Cheung.104990	0	.	36927809	36929851	0	1	2042	0
chr15	36930797	36932926	HIT000191355	0	+	36930797	36932926	0	1	2129	0
chr15	36958224	36959101	prostate_carcinoma.51949	0	.	36958224	36959101	0	1	877	0
chr15	36958285	36959025	HepG2_Caltech_ENCODE.19011	0	.	36958285	36959025	0	1	740	0
chr15	36961402	36962141	prostate_carcinoma.51950	0	.	36961402	36962141	0	1	739	0
chr15	36966613	36968051	REMC_MyoepithelialBreast.50028	0	.	36966613	36968051	0	1	1438	0
chr15	37006362	37007055	REMC_LuminalBreast.53488	0	.	37006362	37007055	0	1	693	0
chr15	37028841	37029214	B_cells_Cheung.105000	0	.	37028841	37029214	0	1	373	0
chr15	37051439	37051979	B_cells_Cheung.105010	0	.	37051439	37051979	0	1	540	0
chr15	37052807	37053904	prostate_carcinoma.51956	0	.	37052807	37053904	0	1	1097	0
chr15	37248247	37256419	Rinn_00023357	0	+	37248247	37256419	0	3	88,158,175	0,4223,7997
chr15	37297087	37297971	REMC_LuminalBreast.53489	0	.	37297087	37297971	0	1	884	0
chr15	37355439	37356918	melanoma_Garraway_short_term_cultures.35423	0	.	37355439	37356918	0	1	1479	0
chr15	37360956	37363566	HIT000045414	0	-	37360956	37363566	0	1	2610	0
chr15	37474831	37475530	MIP101.36192	0	.	37474831	37475530	0	1	699	0
chr15	37497786	37500264	H1_polyA+.60854	0	.	37497786	37500264	0	1	2478	0
chr15	37498729	37508997	MIP101.36195	0	+	37498729	37508997	0	2	1381,1597	0,8671
chr15	37499265	37500124	K562.23454	0	.	37499265	37500124	0	1	859	0
chr15	37874466	37875702	melanoma_Garraway_short_term_cultures.35427	0	.	37874466	37875702	0	1	1236	0
chr15	37874557	37875311	H9_polyA+.23581	0	.	37874557	37875311	0	1	754	0
chr15	37875243	37875601	H1_rRNA-depleted_UCSD_REMC.47062	0	.	37875243	37875601	0	1	358	0
chr15	37876461	37877217	brain_AmbionMAQC.22885	0	.	37876461	37877217	0	1	756	0
chr15	37876739	37877261	MDAMB231_Thompson.11665	0	.	37876739	37877261	0	1	522	0
chr15	37876751	37877464	H9_polyA+.23582	0	.	37876751	37877464	0	1	713	0
chr15	38003451	38004526	H1_polyA+.60886	0	.	38003451	38004526	0	1	1075	0
chr15	38004019	38004384	testes_Burge.27147	0	.	38004019	38004384	0	1	365	0
chr15	38124654	38141698	khalil_785	0	.	38124654	38141698	0	9	39,209,78,255,243,163,41,249,385	0,530,2058,2980,3462,5158,8548,10698,16659
chr15	38125448	38137919	Rinn_00023370	0	+	38125448	38137919	0	2	114,1975	0,10496
chr15	38128062	38128399	HeLa_polyA+_Chen.18771	0	.	38128062	38128399	0	1	337	0
chr15	38128502	38131294	T47D_Burge_Thompson.14949	0	+	38128502	38131294	0	3	1542,237,839	0,1560,1953
chr15	38128685	38130932	CD4_Plagnol_activated.33451	0	.	38128685	38130932	0	1	2247	0
chr15	38129104	38130370	CD4_Plagnol_resting.32589	0	.	38129104	38130370	0	1	1266	0
chr15	38129375	38131187	BT474_Burge_Thompson.17361	0	.	38129375	38131187	0	1	1812	0
chr15	38129377	38130400	brain_AmbionMAQC.22934	0	.	38129377	38130400	0	1	1023	0
chr15	38129927	38130662	MB435_Burge.21435	0	.	38129927	38130662	0	1	735	0
chr15	38129979	38130426	testes_Raymond.94360	0	.	38129979	38130426	0	1	447	0
chr15	38129997	38130435	lymph_node_Burge.25178	0	.	38129997	38130435	0	1	438	0
chr15	38130057	38130731	breast_Burge.20454	0	.	38130057	38130731	0	1	674	0
chr15	38130086	38130561	heart_Raymond.35355	0	+	38130086	38130561	0	2	215,124	0,351
chr15	38130102	38130767	testes_Burge.27158	0	.	38130102	38130767	0	1	665	0
chr15	38130174	38134808	HeLa_polyA+_Chen.18773	0	.	38130174	38134808	0	1	4634	0
chr15	38130309	38131294	T47D_Burge_Thompson.14950	0	.	38130309	38131294	0	1	985	0
chr15	38130547	38131294	H9_polyA+.23614	0	.	38130547	38131294	0	1	747	0
chr15	38131511	38138237	melanoma_Garraway_short_term_cultures.35448	0	.	38131511	38138237	0	1	6726	0
chr15	38134119	38136338	T47D_Burge_Thompson.14952	0	.	38134119	38136338	0	1	2219	0
chr15	38134186	38135863	A549_Myers.41591	0	.	38134186	38135863	0	1	1677	0
chr15	38134355	38136327	BT474_Burge_Thompson.17365	0	.	38134355	38136327	0	1	1972	0
chr15	38134492	38136375	CD4_Plagnol_resting.32593	0	.	38134492	38136375	0	1	1883	0
chr15	38134610	38135700	brain_AmbionMAQC.22936	0	.	38134610	38135700	0	1	1090	0
chr15	38135141	38136547	H9_polyA+.23610	0	.	38135141	38136547	0	1	1406	0
chr15	38135208	38135748	testes_Burge.27159	0	.	38135208	38135748	0	1	540	0
chr15	38135814	38136986	CD4_Plagnol_activated.33453	0	.	38135814	38136986	0	1	1172	0
chr15	38136517	38137548	T47D_Burge_Thompson.14953	0	.	38136517	38137548	0	1	1031	0
chr15	38136601	38138706	H1_polyA+.61000	0	.	38136601	38138706	0	1	2105	0
chr15	38137103	38138515	prostate_normal.30379	0	.	38137103	38138515	0	1	1412	0
chr15	38137168	38138254	brain_AmbionMAQC.22938	0	.	38137168	38138254	0	1	1086	0
chr15	38137431	38138405	H9_polyA+.23619	0	.	38137431	38138405	0	1	974	0
chr15	38137432	38138256	BT474_Burge_Thompson.17366	0	.	38137432	38138256	0	1	824	0
chr15	38137556	38138386	CD4_Plagnol_activated.33454	0	.	38137556	38138386	0	1	830	0
chr15	38137645	38138462	liver_polyA+.71727	0	.	38137645	38138462	0	1	817	0
chr15	38137695	38138710	T47D_Burge_Thompson.14954	0	.	38137695	38138710	0	1	1015	0
chr15	38137712	38138299	MCF7_Burge_Thompson.15631	0	.	38137712	38138299	0	1	587	0
chr15	38138727	38142844	prostate_normal.30386	0	-	38138727	38142844	0	2	2043,2022	0,2095
chr15	38138897	38144016	A549_Myers.41589	0	.	38138897	38144016	0	1	5119	0
chr15	38139054	38144096	BT474_Burge_Thompson.17358	0	.	38139054	38144096	0	1	5042	0
chr15	38139485	38143137	CD4_Plagnol_activated.33455	0	.	38139485	38143137	0	1	3652	0
chr15	38139518	38141449	REMC_LuminalBreast.53542	0	.	38139518	38141449	0	1	1931	0
chr15	38139544	38141386	CD4_Plagnol_resting.32596	0	.	38139544	38141386	0	1	1842	0
chr15	38139732	38140755	liver_polyA+.71729	0	.	38139732	38140755	0	1	1023	0
chr15	38140103	38140765	MB435_Burge.21439	0	.	38140103	38140765	0	1	662	0
chr15	38140149	38141052	H9_polyA+.23621	0	.	38140149	38141052	0	1	903	0
chr15	38140154	38141403	HeLa_polyA+_Chen.18778	0	.	38140154	38141403	0	1	1249	0
chr15	38140169	38140869	ZR751_Thompson.12539	0	.	38140169	38140869	0	1	700	0
chr15	38141449	38143118	REMC_LuminalBreast.53543	0	.	38141449	38143118	0	1	1669	0
chr15	38141472	38142994	HeLa_polyA+_Chen.18779	0	.	38141472	38142994	0	1	1522	0
chr15	38141548	38142325	REMC_MyoepithelialBreast.50200	0	.	38141548	38142325	0	1	777	0
chr15	38142523	38143489	liver_polyA+.71731	0	.	38142523	38143489	0	1	966	0
chr15	38142575	38142904	ZR751_Thompson.12540	0	.	38142575	38142904	0	1	329	0
chr15	38143019	38144091	MCF10A_Thompson.11345	0	.	38143019	38144091	0	1	1072	0
chr15	38143088	38143940	HeLa_polyA+_Chen.18780	0	.	38143088	38143940	0	1	852	0
chr15	38148324	38150073	B_cells_Cheung.105187	0	.	38148324	38150073	0	1	1749	0
chr15	38154789	38156505	B_cells_Cheung.105103	0	.	38154789	38156505	0	1	1716	0
chr15	38154792	38155713	melanoma_Garraway_short_term_cultures.35450	0	.	38154792	38155713	0	1	921	0
chr15	38154848	38161226	HepG2_Caltech_ENCODE.19027	0	-	38154848	38161226	0	2	665,205	0,6173
chr15	38154931	38155529	H1_polyA+.61001	0	.	38154931	38155529	0	1	598	0
chr15	38156889	38157740	B_cells_Cheung.105106	0	.	38156889	38157740	0	1	851	0
chr15	38226675	38226998	B_Cells_Pritchard.1833667	0	.	38226675	38226998	0	1	323	0
chr15	38358433	38358857	A549_Myers.41615	0	.	38358433	38358857	0	1	424	0
chr15	38402886	38406206	brain_AmbionMAQC.22914	0	.	38402886	38406206	0	1	3320	0
chr15	38402926	38406206	ZR751_Thompson.12549	0	.	38402926	38406206	0	1	3280	0
chr15	38402970	38406206	B_cells_Cheung.105112	0	.	38402970	38406206	0	1	3236	0
chr15	38403010	38406203	BT474_Burge_Thompson.17350	0	.	38403010	38406203	0	1	3193	0
chr15	38403023	38406205	colon_Burge.19566	0	.	38403023	38406205	0	1	3182	0
chr15	38403035	38406196	BT20_Thompson.11201	0	.	38403035	38406196	0	1	3161	0
chr15	38403042	38406210	H1_polyA+.61017	0	.	38403042	38406210	0	1	3168	0
chr15	38403057	38406206	CD4_Plagnol_activated.33478	0	.	38403057	38406206	0	1	3149	0
chr15	38403058	38404720	adipose_Burge.19906	0	.	38403058	38404720	0	1	1662	0
chr15	38403086	38406203	CD4_Plagnol_resting.32602	0	.	38403086	38406203	0	1	3117	0
chr15	38403130	38406206	MDAMB231_Thompson.11684	0	.	38403130	38406206	0	1	3076	0
chr15	38403136	38404680	HME_Burge.20738	0	.	38403136	38404680	0	1	1544	0
chr15	38403143	38406206	MCF10A_Thompson.11354	0	.	38403143	38406206	0	1	3063	0
chr15	38403144	38406203	liver_polyA+.71760	0	.	38403144	38406203	0	1	3059	0
chr15	38403144	38406206	testes_Burge.27193	0	.	38403144	38406206	0	1	3062	0
chr15	38403151	38406196	T47D_Burge_Thompson.14962	0	.	38403151	38406196	0	1	3045	0
chr15	38403155	38406206	MDAMB468_Thompson.12676	0	.	38403155	38406206	0	1	3051	0
chr15	38403155	38404721	lymph_node_Burge.25205	0	.	38403155	38404721	0	1	1566	0
chr15	38403158	38403732	MB435_Burge.21447	0	.	38403158	38403732	0	1	574	0
chr15	38403163	38406205	prostate_normal.30402	0	.	38403163	38406205	0	1	3042	0
chr15	38403273	38403680	breast_Burge.20459	0	.	38403273	38403680	0	1	407	0
chr15	38403274	38406206	K562.23491	0	.	38403274	38406206	0	1	2932	0
chr15	38403281	38406985	melanoma_Garraway_short_term_cultures.35472	0	.	38403281	38406985	0	1	3704	0
chr15	38403303	38403711	skeletal_muscle_Burge.15193	0	.	38403303	38403711	0	1	408	0
chr15	38403375	38406318	REMC_BreastStem.26944	0	.	38403375	38406318	0	1	2943	0
chr15	38403407	38403715	heart_Burge.15287	0	.	38403407	38403715	0	1	308	0
chr15	38403411	38406199	MCF7_Burge_Thompson.15645	0	.	38403411	38406199	0	1	2788	0
chr15	38403412	38406203	HeLa_polyA+_Chen.18794	0	.	38403412	38406203	0	1	2791	0
chr15	38403423	38406382	REMC_MyoepithelialBreast.50205	0	.	38403423	38406382	0	1	2959	0
chr15	38403425	38403725	H9_polyA-_Chen.7630	0	.	38403425	38403725	0	1	300	0
chr15	38403479	38404260	pHIT000114132	0	+	38403479	38404260	0	2	323,370	0,411
chr15	38403548	38404010	pHIT000024930	0	+	38403548	38404010	0	1	462	0
chr15	38403548	38404260	pHIT000024937	0	+	38403548	38404260	0	2	254,370	0,342
chr15	38403784	38404565	breast_Burge.20460	0	.	38403784	38404565	0	1	781	0
chr15	38403827	38404709	heart_Burge.15289	0	.	38403827	38404709	0	1	882	0
chr15	38403924	38406210	MeWo_Garraway.18716	0	.	38403924	38406210	0	1	2286	0
chr15	38403950	38406221	HIT000094401	0	+	38403950	38406221	0	1	2271	0
chr15	38403972	38406222	HIT000098219	0	+	38403972	38406222	0	1	2250	0
chr15	38403983	38404580	MB435_Burge.21445	0	.	38403983	38404580	0	1	597	0
chr15	38404148	38406210	MeI_Garraway.9214	0	.	38404148	38406210	0	1	2062	0
chr15	38404230	38405390	H1_rRNA-depleted_UCSD_REMC.47186	0	.	38404230	38405390	0	1	1160	0
chr15	38404305	38405358	H9_polyA-_Chen.7632	0	.	38404305	38405358	0	1	1053	0
chr15	38404439	38405290	HeLa_polyA-_Chen.10074	0	.	38404439	38405290	0	1	851	0
chr15	38404542	38405288	IMR90_UCSD_REMC.26649	0	-	38404542	38405288	0	1	746	0
chr15	38404767	38405681	breast_Burge.20461	0	.	38404767	38405681	0	1	914	0
chr15	38404783	38406201	lymph_node_Burge.25204	0	.	38404783	38406201	0	1	1418	0
chr15	38404790	38406195	adipose_Burge.19897	0	.	38404790	38406195	0	1	1405	0
chr15	38404801	38406203	HepG2_Caltech_ENCODE.19040	0	.	38404801	38406203	0	1	1402	0
chr15	38404805	38405946	heart_Burge.15290	0	.	38404805	38405946	0	1	1141	0
chr15	38423772	38424672	A549_Myers.41628	0	.	38423772	38424672	0	1	900	0
chr15	38424877	38425987	prostate_carcinoma.52107	0	.	38424877	38425987	0	1	1110	0
chr15	38476359	38478306	ZR751_Thompson.12550	0	.	38476359	38478306	0	1	1947	0
chr15	38476398	38479480	HeLa_polyA+_Chen.18799	0	.	38476398	38479480	0	1	3082	0
chr15	38476759	38477900	T47D_Burge_Thompson.14973	0	.	38476759	38477900	0	1	1141	0
chr15	38476770	38478889	BT20_Thompson.11212	0	.	38476770	38478889	0	1	2119	0
chr15	38476771	38478899	melanoma_Garraway_short_term_cultures.35482	0	.	38476771	38478899	0	1	2128	0
chr15	38476977	38478922	MDAMB468_Thompson.12682	0	.	38476977	38478922	0	1	1945	0
chr15	38477691	38479143	REMC_LuminalBreast.53557	0	.	38477691	38479143	0	1	1452	0
chr15	38516058	38516375	H1_rRNA-depleted_UCSD_REMC.47211	0	.	38516058	38516375	0	1	317	0
chr15	38516966	38517395	A549_Myers.41652	0	.	38516966	38517395	0	1	429	0
chr15	38517780	38518826	H1_polyA+.61020	0	.	38517780	38518826	0	1	1046	0
chr15	38554855	38556046	REMC_MyoepithelialBreast.50224	0	.	38554855	38556046	0	1	1191	0
chr15	38555930	38556749	REMC_BreastStem.26953	0	.	38555930	38556749	0	1	819	0
chr15	38566886	38570537	REMC_LuminalBreast.53574	0	.	38566886	38570537	0	1	3651	0
chr15	38568780	38569250	B_Cells_Pritchard.1834589	0	.	38568780	38569250	0	1	470	0
chr15	38572349	38576447	REMC_LuminalBreast.53576	0	.	38572349	38576447	0	1	4098	0
chr15	38572808	38573636	REMC_MyoepithelialBreast.50231	0	.	38572808	38573636	0	1	828	0
chr15	38573871	38574553	REMC_BreastStem.26954	0	.	38573871	38574553	0	1	682	0
chr15	38576677	38579206	REMC_LuminalBreast.53578	0	.	38576677	38579206	0	1	2529	0
chr15	38578369	38579237	REMC_MyoepithelialBreast.50233	0	.	38578369	38579237	0	1	868	0
chr15	38578478	38579559	REMC_BreastStem.26956	0	.	38578478	38579559	0	1	1081	0
chr15	38585283	38586669	REMC_LuminalBreast.53581	0	.	38585283	38586669	0	1	1386	0
chr15	38586664	38586998	A549_Myers.41659	0	.	38586664	38586998	0	1	334	0
chr15	38589325	38590420	REMC_MyoepithelialBreast.50234	0	.	38589325	38590420	0	1	1095	0
chr15	38589352	38590852	H1_polyA+.61030	0	.	38589352	38590852	0	1	1500	0
chr15	38589512	38592540	B_cells_Cheung.105152	0	.	38589512	38592540	0	1	3028	0
chr15	38589536	38591020	REMC_LuminalBreast.53579	0	.	38589536	38591020	0	1	1484	0
chr15	38589742	38591257	B_Cells_Pritchard.1834695	0	.	38589742	38591257	0	1	1515	0
chr15	38589843	38590354	prostate_carcinoma.52110	0	.	38589843	38590354	0	1	511	0
chr15	38590682	38591255	K562.23497	0	.	38590682	38591255	0	1	573	0
chr15	38590833	38591434	A549_Myers.41660	0	.	38590833	38591434	0	1	601	0
chr15	38591228	38592155	REMC_LuminalBreast.53583	0	.	38591228	38592155	0	1	927	0
chr15	38591357	38595248	B_Cells_Pritchard.1836189	0	+	38591357	38595248	0	2	1155,299	0,3592
chr15	38591357	38592501	B_Cells_Pritchard.1836187	0	-	38591357	38592501	0	1	1144	0
chr15	38592414	38593687	REMC_LuminalBreast.53584	0	.	38592414	38593687	0	1	1273	0
chr15	38592632	38593862	B_Cells_Pritchard.1836191	0	-	38592632	38593862	0	1	1230	0
chr15	38594746	38595101	CD4_Plagnol_resting.32614	0	.	38594746	38595101	0	1	355	0
chr15	38594772	38595262	REMC_LuminalBreast.53585	0	.	38594772	38595262	0	1	490	0
chr15	38599314	38600055	B_Cells_Pritchard.1836201	0	+	38599314	38600055	0	1	741	0
chr15	38600235	38601511	B_Cells_Pritchard.1836203	0	+	38600235	38601511	0	1	1276	0
chr15	38600325	38602314	REMC_BreastStem.26969	0	.	38600325	38602314	0	1	1989	0
chr15	38600677	38602811	REMC_LuminalBreast.53642	0	.	38600677	38602811	0	1	2134	0
chr15	38600703	38602411	REMC_MyoepithelialBreast.50239	0	.	38600703	38602411	0	1	1708	0
chr15	38601626	38606139	B_Cells_Pritchard.1836207	0	+	38601626	38606139	0	4	986,588,155,1250	0,1560,3020,3263
chr15	38603916	38606843	H1_polyA+.61034	0	.	38603916	38606843	0	1	2927	0
chr15	38604022	38604343	HepG2_Caltech_ENCODE.19056	0	.	38604022	38604343	0	1	321	0
chr15	38604030	38606321	REMC_BreastStem.26970	0	.	38604030	38606321	0	1	2291	0
chr15	38604190	38604717	brain_AmbionMAQC.22939	0	.	38604190	38604717	0	1	527	0
chr15	38604393	38605319	HepG2_Caltech_ENCODE.19057	0	.	38604393	38605319	0	1	926	0
chr15	38604929	38605791	prostate_carcinoma.52118	0	.	38604929	38605791	0	1	862	0
chr15	38604936	38606144	prostate_normal.30410	0	.	38604936	38606144	0	1	1208	0
chr15	38604937	38606124	melanoma_Garraway_short_term_cultures.35507	0	.	38604937	38606124	0	1	1187	0
chr15	38604943	38606146	MIP101.36256	0	.	38604943	38606146	0	1	1203	0
chr15	38604948	38606639	K562.23499	0	.	38604948	38606639	0	1	1691	0
chr15	38604967	38606155	CD4_Plagnol_activated.33569	0	.	38604967	38606155	0	1	1188	0
chr15	38605032	38605817	HeLa_polyA+_Chen.18813	0	.	38605032	38605817	0	1	785	0
chr15	38605325	38606065	MDAMB468_Thompson.12699	0	.	38605325	38606065	0	1	740	0
chr15	38605446	38607993	HIT000022840	0	+	38605446	38607993	0	2	739,1038	0,1509
chr15	38605452	38606145	CD4_Plagnol_resting.32617	0	.	38605452	38606145	0	1	693	0
chr15	38606904	38608401	HepG2_Caltech_ENCODE.19059	0	.	38606904	38608401	0	1	1497	0
chr15	38606934	38608750	CD4_Plagnol_activated.33570	0	.	38606934	38608750	0	1	1816	0
chr15	38607098	38608079	MDAMB468_Thompson.12700	0	.	38607098	38608079	0	1	981	0
chr15	38607340	38608216	MIP101.36258	0	.	38607340	38608216	0	1	876	0
chr15	38765650	38769780	HIT000007651	0	-	38765650	38769780	0	1	4130	0
chr15	38765963	38772563	K562.23571	0	.	38765963	38772563	0	1	6600	0
chr15	38766221	38772563	K562.23572	0	-	38766221	38772563	0	2	3887,1333	0,5009
chr15	38767334	38767780	CD4_Snyder.41252	0	.	38767334	38767780	0	1	446	0
chr15	38767410	38767773	liver_polyA+.71839	0	.	38767410	38767773	0	1	363	0
chr15	38769355	38772399	B_cells_Cheung.105228	0	.	38769355	38772399	0	1	3044	0
chr15	38769568	38772352	BT474_Burge_Thompson.17380	0	.	38769568	38772352	0	1	2784	0
chr15	38770392	38772359	CD4_Plagnol_activated.33557	0	.	38770392	38772359	0	1	1967	0
chr15	38770407	38772344	brain_AmbionMAQC.22985	0	.	38770407	38772344	0	1	1937	0
chr15	38770446	38772375	melanoma_Garraway_short_term_cultures.35536	0	.	38770446	38772375	0	1	1929	0
chr15	38770492	38772205	MeWo_Garraway.18752	0	.	38770492	38772205	0	1	1713	0
chr15	38770497	38772358	T47D_Burge_Thompson.15001	0	.	38770497	38772358	0	1	1861	0
chr15	38839229	38840807	B_cells_Cheung.105511	0	.	38839229	38840807	0	1	1578	0
chr15	38840392	38842429	liver_polyA+.71965	0	-	38840392	38842429	0	2	272,280	0,1757
chr15	38911240	38911981	REMC_LuminalBreast.53790	0	.	38911240	38911981	0	1	741	0
chr15	38911410	38912028	prostate_carcinoma.52526	0	.	38911410	38912028	0	1	618	0
chr15	38911545	38912050	MIP101.36378	0	.	38911545	38912050	0	1	505	0
chr15	38942997	38945099	REMC_MyoepithelialBreast.50312	0	.	38942997	38945099	0	1	2102	0
chr15	38943940	38944309	B_Cells_Pritchard.1835375	0	+	38943940	38944309	0	1	369	0
chr15	38945223	38946075	REMC_MyoepithelialBreast.50313	0	.	38945223	38946075	0	1	852	0
chr15	38945380	38945934	A549_Myers.41721	0	.	38945380	38945934	0	1	554	0
chr15	38946164	38948599	REMC_LuminalBreast.53801	0	.	38946164	38948599	0	1	2435	0
chr15	38947542	38948573	REMC_MyoepithelialBreast.50315	0	.	38947542	38948573	0	1	1031	0
chr15	38947685	38948558	REMC_BreastStem.27004	0	.	38947685	38948558	0	1	873	0
chr15	38947718	38948160	HeLa_polyA+_Chen.18853	0	.	38947718	38948160	0	1	442	0
chr15	38948946	38949496	prostate_carcinoma.52530	0	.	38948946	38949496	0	1	550	0
chr15	38948948	38950551	B_Cells_Pritchard.1836159	0	-	38948948	38950551	0	1	1603	0
chr15	38948955	38949463	MDAMB468_Thompson.12728	0	.	38948955	38949463	0	1	508	0
chr15	38948966	38950533	BT20_Thompson.11237	0	.	38948966	38950533	0	1	1567	0
chr15	38948971	38949480	HeLa_polyA+_Chen.18858	0	.	38948971	38949480	0	1	509	0
chr15	38949489	38950583	REMC_BreastStem.27006	0	.	38949489	38950583	0	1	1094	0
chr15	38949552	38949941	HeLa_polyA+_Chen.18856	0	.	38949552	38949941	0	1	389	0
chr15	38950073	38950550	MDAMB468_Thompson.12729	0	.	38950073	38950550	0	1	477	0
chr15	38950102	38950449	HeLa_polyA+_Chen.18857	0	.	38950102	38950449	0	1	347	0
chr15	38957838	38959913	REMC_LuminalBreast.53804	0	.	38957838	38959913	0	1	2075	0
chr15	38957878	38959464	H1_polyA+.61100	0	.	38957878	38959464	0	1	1586	0
chr15	38972282	38972793	B_cells_Cheung.105272	0	.	38972282	38972793	0	1	511	0
chr15	38984713	38987816	A549_Myers.41724	0	+	38984713	38987816	0	2	66,1184	0,1919
chr15	38984761	38985284	HeLa_polyA+_Chen.18862	0	.	38984761	38985284	0	1	523	0
chr15	38984977	38988130	ZR751_Thompson.12608	0	.	38984977	38988130	0	1	3153	0
chr15	38984995	38986014	prostate_carcinoma.52154	0	.	38984995	38986014	0	1	1019	0
chr15	38985035	38992185	REMC_LuminalBreast.53663	0	.	38985035	38992185	0	1	7150	0
chr15	38986005	38988825	MDAMB468_Thompson.12735	0	.	38986005	38988825	0	1	2820	0
chr15	38986055	38987338	Rinn_00023378	0	+	38986055	38987338	0	2	457,513	0,770
chr15	38986072	38988139	prostate_carcinoma.52155	0	.	38986072	38988139	0	1	2067	0
chr15	38986507	38987402	MDAMB231_Thompson.11716	0	.	38986507	38987402	0	1	895	0
chr15	38986570	38988102	brain_AmbionMAQC.23040	0	.	38986570	38988102	0	1	1532	0
chr15	38986650	38988022	prostate_normal.30451	0	.	38986650	38988022	0	1	1372	0
chr15	38986674	38987572	testes_Burge.27296	0	.	38986674	38987572	0	1	898	0
chr15	38986675	38987040	HME_Burge.20820	0	.	38986675	38987040	0	1	365	0
chr15	38986782	38988013	REMC_MyoepithelialBreast.50318	0	.	38986782	38988013	0	1	1231	0
chr15	38988333	38990237	REMC_MyoepithelialBreast.50319	0	.	38988333	38990237	0	1	1904	0
chr15	38989115	38989418	brain_AmbionMAQC.23042	0	.	38989115	38989418	0	1	303	0
chr15	38989176	38989547	testes_Burge.27275	0	.	38989176	38989547	0	1	371	0
chr15	38989241	38989837	T47D_Burge_Thompson.15022	0	.	38989241	38989837	0	1	596	0
chr15	38993463	38994372	B_Cells_Pritchard.1835497	0	.	38993463	38994372	0	1	909	0
chr15	38999036	39000801	REMC_LuminalBreast.53665	0	.	38999036	39000801	0	1	1765	0
chr15	39002338	39003110	brain_AmbionMAQC.23043	0	.	39002338	39003110	0	1	772	0
chr15	39002361	39002829	B_Cells_Pritchard.1835527	0	.	39002361	39002829	0	1	468	0
chr15	39003218	39004261	brain_AmbionMAQC.23044	0	.	39003218	39004261	0	1	1043	0
chr15	39004568	39007196	brain_AmbionMAQC.23045	0	.	39004568	39007196	0	1	2628	0
chr15	39006928	39007358	HepG2_Caltech_ENCODE.19085	0	.	39006928	39007358	0	1	430	0
chr15	39007061	39007457	A549_Myers.41728	0	.	39007061	39007457	0	1	396	0
chr15	39019249	39024839	B_Cells_Pritchard.1835553	0	-	39019249	39024839	0	2	5461,76	0,5514
chr15	39020826	39021454	B_cells_Cheung.105292	0	.	39020826	39021454	0	1	628	0
chr15	39021998	39024348	REMC_MyoepithelialBreast.50323	0	.	39021998	39024348	0	1	2350	0
chr15	39023283	39024286	REMC_BreastStem.27015	0	.	39023283	39024286	0	1	1003	0
chr15	39028291	39029209	MCF7_Burge_Thompson.15703	0	.	39028291	39029209	0	1	918	0
chr15	39037654	39038441	B_cells_Cheung.105296	0	.	39037654	39038441	0	1	787	0
chr15	39037674	39038465	IMR90_UCSD_REMC.26740	0	-	39037674	39038465	0	1	791	0
chr15	39039130	39040460	B_Cells_Pritchard.1835577	0	.	39039130	39040460	0	1	1330	0
chr15	39039252	39040271	CD4_Plagnol_activated.33604	0	.	39039252	39040271	0	1	1019	0
chr15	39040591	39040935	B_Cells_Pritchard.1835579	0	.	39040591	39040935	0	1	344	0
chr15	39045714	39046833	REMC_BreastStem.27021	0	.	39045714	39046833	0	1	1119	0
chr15	39047465	39047850	B_cells_Cheung.105297	0	.	39047465	39047850	0	1	385	0
chr15	39049660	39052323	REMC_LuminalBreast.53674	0	.	39049660	39052323	0	1	2663	0
chr15	39052173	39054437	REMC_BreastStem.27061	0	.	39052173	39054437	0	1	2264	0
chr15	39052475	39053730	CD4_Plagnol_activated.33609	0	.	39052475	39053730	0	1	1255	0
chr15	39052928	39053742	B_cells_Cheung.105299	0	.	39052928	39053742	0	1	814	0
chr15	39053284	39053729	CD4_Plagnol_resting.32692	0	.	39053284	39053729	0	1	445	0
chr15	39055022	39056462	B_cells_Cheung.105302	0	.	39055022	39056462	0	1	1440	0
chr15	39200179	39201555	REMC_LuminalBreast.53699	0	.	39200179	39201555	0	1	1376	0
chr15	39212824	39214043	REMC_LuminalBreast.53702	0	.	39212824	39214043	0	1	1219	0
chr15	39214100	39215478	REMC_LuminalBreast.53703	0	.	39214100	39215478	0	1	1378	0
chr15	39594865	39595471	B_Cells_Pritchard.1836155	0	.	39594865	39595471	0	1	606	0
chr15	39659880	39661333	REMC_BreastStem.27093	0	.	39659880	39661333	0	1	1453	0
chr15	39659931	39661067	melanoma_Garraway_short_term_cultures.35710	0	.	39659931	39661067	0	1	1136	0
chr15	39660078	39661004	HeLa_polyA+_Chen.18933	0	.	39660078	39661004	0	1	926	0
chr15	39661200	39663607	H1_polyA+.61219	0	.	39661200	39663607	0	1	2407	0
chr15	39661354	39662160	HeLa_polyA+_Chen.18934	0	.	39661354	39662160	0	1	806	0
chr15	39664203	39664939	H1_polyA+.61220	0	.	39664203	39664939	0	1	736	0
chr15	39664750	39665323	A549_Myers.41816	0	.	39664750	39665323	0	1	573	0
chr15	39700605	39701235	A549_Myers.41817	0	.	39700605	39701235	0	1	630	0
chr15	40209673	40212347	prostate_carcinoma.52606	0	.	40209673	40212347	0	1	2674	0
chr15	40211074	40211822	prostate_normal.30710	0	.	40211074	40211822	0	1	748	0
chr15	40650859	40652518	REMC_BreastStem.27157	0	.	40650859	40652518	0	1	1659	0
chr15	40651064	40652394	REMC_MyoepithelialBreast.50540	0	.	40651064	40652394	0	1	1330	0
chr15	40651346	40652256	HeLa_polyA+_Chen.18989	0	.	40651346	40652256	0	1	910	0
chr15	40651355	40652116	REMC_LuminalBreast.53823	0	.	40651355	40652116	0	1	761	0
chr15	40651553	40651870	MDAMB468_Thompson.12788	0	.	40651553	40651870	0	1	317	0
chr15	41201210	41202300	REMC_MyoepithelialBreast.50603	0	.	41201210	41202300	0	1	1090	0
chr15	41308912	41309827	REMC_LuminalBreast.53854	0	.	41308912	41309827	0	1	915	0
chr15	42502948	42505774	REMC_BreastStem.27267	0	+	42502948	42505774	0	2	81,518	0,2308
chr15	42503573	42505748	REMC_LuminalBreast.55893	0	.	42503573	42505748	0	1	2175	0
chr15	42608661	42610611	B_cells_Cheung.106270	0	.	42608661	42610611	0	1	1950	0
chr15	42608910	42609859	prostate_carcinoma.56684	0	.	42608910	42609859	0	1	949	0
chr15	42801190	42802483	B_cells_Cheung.115453	0	.	42801190	42802483	0	1	1293	0
chr15	42801467	42802340	CD4_Plagnol_activated.66510	0	.	42801467	42802340	0	1	873	0
chr15	42805507	42808203	B_cells_Cheung.115456	0	.	42805507	42808203	0	1	2696	0
chr15	42850278	42851217	REMC_MyoepithelialBreast.50940	0	.	42850278	42851217	0	1	939	0
chr15	42851835	42852344	REMC_MyoepithelialBreast.50941	0	.	42851835	42852344	0	1	509	0
chr15	42852206	42853362	REMC_BreastStem.31953	0	.	42852206	42853362	0	1	1156	0
chr15	42852424	42853748	REMC_MyoepithelialBreast.50942	0	.	42852424	42853748	0	1	1324	0
chr15	42860978	42861291	K562.23827	0	.	42860978	42861291	0	1	313	0
chr15	42942501	42943111	B_cells_Cheung.106382	0	.	42942501	42943111	0	1	610	0
chr15	42944886	42945940	B_cells_Cheung.106385	0	.	42944886	42945940	0	1	1054	0
chr15	42946274	42946613	B_cells_Cheung.106386	0	.	42946274	42946613	0	1	339	0
chr15	42947091	42947454	B_cells_Cheung.106389	0	.	42947091	42947454	0	1	363	0
chr15	42952050	42952500	B_cells_Cheung.106395	0	.	42952050	42952500	0	1	450	0
chr15	42954406	42955976	B_cells_Cheung.106399	0	.	42954406	42955976	0	1	1570	0
chr15	43294944	43295424	NEC_from_H9.40064	0	+	43294944	43295424	0	2	194,134	0,346
chr15	43360994	43361999	prostate_carcinoma.52599	0	.	43360994	43361999	0	1	1005	0
chr15	43404043	43404565	B_cells_Cheung.106488	0	.	43404043	43404565	0	1	522	0
chr15	43409994	43410463	liver_polyA+.72748	0	.	43409994	43410463	0	1	469	0
chr15	43428152	43428784	B_cells_Cheung.106497	0	.	43428152	43428784	0	1	632	0
chr15	43470715	43472972	B_cells_Cheung.106516	0	.	43470715	43472972	0	1	2257	0
chr15	43470832	43472556	B_Cells_Pritchard.1843425	0	.	43470832	43472556	0	1	1724	0
chr15	43471201	43472232	H1_polyA+.61837	0	.	43471201	43472232	0	1	1031	0
chr15	43475342	43476120	H1_polyA+.61838	0	.	43475342	43476120	0	1	778	0
chr15	43635596	43636876	REMC_BreastStem.27385	0	.	43635596	43636876	0	1	1280	0
chr15	43652801	43653918	REMC_LuminalBreast.59428	0	.	43652801	43653918	0	1	1117	0
chr15	43698415	43702647	REMC_MyoepithelialBreast.51023	0	.	43698415	43702647	0	1	4232	0
chr15	43698415	43702623	REMC_BreastStem.27397	0	.	43698415	43702623	0	1	4208	0
chr15	43699561	43702647	REMC_LuminalBreast.54176	0	.	43699561	43702647	0	1	3086	0
chr15	43705111	43709012	REMC_LuminalBreast.54179	0	.	43705111	43709012	0	1	3901	0
chr15	43707881	43709030	REMC_BreastStem.27401	0	.	43707881	43709030	0	1	1149	0
chr15	43772771	43773643	B_cells_Cheung.106647	0	.	43772771	43773643	0	1	872	0
chr15	43772809	43773623	prostate_carcinoma.52671	0	.	43772809	43773623	0	1	814	0
chr15	43774586	43776042	prostate_carcinoma.52672	0	.	43774586	43776042	0	1	1456	0
chr15	43778373	43779431	prostate_carcinoma.52675	0	.	43778373	43779431	0	1	1058	0
chr15	43779758	43782640	prostate_carcinoma.52676	0	.	43779758	43782640	0	1	2882	0
chr15	43779899	43782667	B_Cells_Pritchard.1844365	0	.	43779899	43782667	0	1	2768	0
chr15	43780154	43782637	prostate_normal.30830	0	.	43780154	43782637	0	1	2483	0
chr15	43780251	43782668	B_cells_Cheung.106653	0	.	43780251	43782668	0	1	2417	0
chr15	43780772	43781789	REMC_MyoepithelialBreast.51032	0	.	43780772	43781789	0	1	1017	0
chr15	43781198	43782327	CD4_Plagnol_activated.34163	0	.	43781198	43782327	0	1	1129	0
chr15	43784172	43784779	H1_polyA+.61852	0	.	43784172	43784779	0	1	607	0
chr15	43791207	43792570	H1_polyA+.61856	0	.	43791207	43792570	0	1	1363	0
chr15	43798577	43801915	H1_polyA+.61861	0	.	43798577	43801915	0	1	3338	0
chr15	43811463	43814699	H1_polyA+.61866	0	.	43811463	43814699	0	1	3236	0
chr15	43812537	43819019	pHIT000025115	0	-	43812537	43819019	0	3	109,81,137	0,5047,6345
chr15	43817036	43817861	H1_polyA+.61868	0	.	43817036	43817861	0	1	825	0
chr15	43901326	43902056	H1_polyA+.61874	0	.	43901326	43902056	0	1	730	0
chr15	43931637	43933314	H1_polyA+.61878	0	.	43931637	43933314	0	1	1677	0
chr15	43946733	43949693	H1_polyA+.61883	0	.	43946733	43949693	0	1	2960	0
chr15	43958884	44008563	H1_polyA+.61888	0	+	43958884	44008563	0	3	684,153,1143	0,47434,48536
chr15	43963484	43965334	H1_polyA+.61890	0	.	43963484	43965334	0	1	1850	0
chr15	43963898	43965149	prostate_carcinoma.52678	0	.	43963898	43965149	0	1	1251	0
chr15	43966021	43966802	H1_polyA+.61891	0	.	43966021	43966802	0	1	781	0
chr15	43970384	43971408	H1_polyA+.61892	0	.	43970384	43971408	0	1	1024	0
chr15	43972902	43974909	H1_polyA+.61893	0	.	43972902	43974909	0	1	2007	0
chr15	44000450	44001435	prostate_carcinoma.52680	0	.	44000450	44001435	0	1	985	0
chr15	44041645	44042706	MIP101.36750	0	.	44041645	44042706	0	1	1061	0
chr15	44041686	44044042	prostate_carcinoma.52681	0	-	44041686	44044042	0	2	313,102	0,2254
chr15	44211466	44212324	B_Cells_Pritchard.1845437	0	.	44211466	44212324	0	1	858	0
chr15	44369656	44370081	B_Cells_Pritchard.1845851	0	.	44369656	44370081	0	1	425	0
chr15	44468091	44468555	MeI_Garraway.9403	0	.	44468091	44468555	0	1	464	0
chr15	44468112	44468999	MIP101.36754	0	.	44468112	44468999	0	1	887	0
chr15	44593460	44593881	B_cells_Cheung.106686	0	.	44593460	44593881	0	1	421	0
chr15	44593987	44595577	B_cells_Cheung.106687	0	.	44593987	44595577	0	1	1590	0
chr15	44621294	44621733	B_cells_Cheung.106691	0	.	44621294	44621733	0	1	439	0
chr15	44638294	44641510	B_cells_Cheung.106700	0	.	44638294	44641510	0	1	3216	0
chr15	44640223	44641783	B_Cells_Pritchard.1846635	0	.	44640223	44641783	0	1	1560	0
chr15	44642067	44647205	B_cells_Cheung.106702	0	.	44642067	44647205	0	1	5138	0
chr15	44644141	44646617	B_Cells_Pritchard.1846643	0	.	44644141	44646617	0	1	2476	0
chr15	44665956	44668984	B_Cells_Pritchard.1846725	0	.	44665956	44668984	0	1	3028	0
chr15	44665965	44669042	B_cells_Cheung.106716	0	.	44665965	44669042	0	1	3077	0
chr15	44671842	44672354	B_cells_Cheung.106719	0	.	44671842	44672354	0	1	512	0
chr15	44677352	44677962	B_cells_Cheung.106724	0	.	44677352	44677962	0	1	610	0
chr15	44677535	44677989	B_Cells_Pritchard.1846759	0	.	44677535	44677989	0	1	454	0
chr15	44712506	44713297	B_cells_Cheung.106758	0	.	44712506	44713297	0	1	791	0
chr15	44719134	44719603	B_cells_Cheung.106764	0	.	44719134	44719603	0	1	469	0
chr15	44719246	44719588	B_Cells_Pritchard.1846925	0	.	44719246	44719588	0	1	342	0
chr15	44723322	44724589	B_cells_Cheung.106770	0	.	44723322	44724589	0	1	1267	0
chr15	44765262	44767410	B_cells_Cheung.106797	0	.	44765262	44767410	0	1	2148	0
chr15	44766379	44774156	B_Cells_Pritchard.1847091	0	-	44766379	44774156	0	2	541,197	0,7580
chr15	44775731	44776424	B_cells_Cheung.106806	0	.	44775731	44776424	0	1	693	0
chr15	44891516	44892233	B_cells_Cheung.106840	0	.	44891516	44892233	0	1	717	0
chr15	44891652	44893462	Rinn_00023667	0	-	44891652	44893462	0	2	332,61	0,1749
chr15	44895445	44896229	B_cells_Cheung.106842	0	.	44895445	44896229	0	1	784	0
chr15	45260892	45262307	prostate_carcinoma.52682	0	.	45260892	45262307	0	1	1415	0
chr15	45882897	45925724	Rinn_00023670	0	-	45882897	45925724	0	6	27,106,107,59,129,108	0,1364,10661,24149,41428,42719
chr15	45893504	45925724	Rinn_00023671	0	-	45893504	45925724	0	4	161,59,129,108	0,13542,30821,32112
chr15	45902694	45903600	HeLa_polyA-_Chen.10276	0	.	45902694	45903600	0	1	906	0
chr15	46040053	46098567	pHIT000114267	0	-	46040053	46098567	0	6	61,170,127,110,91,140	0,8229,14698,47273,56968,58374
chr15	46068170	46068881	B_cells_Cheung.106902	0	.	46068170	46068881	0	1	711	0
chr15	46087988	46088660	HeLa_polyA+_Chen.19218	0	.	46087988	46088660	0	1	672	0
chr15	46091777	46092292	HeLa_polyA+_Chen.19219	0	.	46091777	46092292	0	1	515	0
chr15	46148881	46151372	MeWo_Garraway.19207	0	.	46148881	46151372	0	1	2491	0
chr15	46151854	46155406	MeWo_Garraway.19208	0	.	46151854	46155406	0	1	3552	0
chr15	46155558	46166891	MeWo_Garraway.19209	0	.	46155558	46166891	0	1	11333	0
chr15	46171520	46173627	MeWo_Garraway.19212	0	.	46171520	46173627	0	1	2107	0
chr15	46406961	46408691	H1_polyA+.61913	0	.	46406961	46408691	0	1	1730	0
chr15	46407038	46410271	HIT000306453	0	-	46407038	46410271	0	2	1547,952	0,2281
chr15	46407055	46409108	B_cells_Cheung.106936	0	.	46407055	46409108	0	1	2053	0
chr15	46407087	46408714	K562.23862	0	.	46407087	46408714	0	1	1627	0
chr15	46407186	46408535	HeLa_polyA+_Chen.19228	0	.	46407186	46408535	0	1	1349	0
chr15	46407296	46408217	melanoma_Garraway_short_term_cultures.36325	0	.	46407296	46408217	0	1	921	0
chr15	46407313	46408407	prostate_carcinoma.52700	0	.	46407313	46408407	0	1	1094	0
chr15	46408061	46408535	H9_polyA+.24009	0	.	46408061	46408535	0	1	474	0
chr15	46456727	46457417	REMC_BreastStem.27418	0	.	46456727	46457417	0	1	690	0
chr15	46726695	46728087	B_Cells_Pritchard.1851143	0	.	46726695	46728087	0	1	1392	0
chr15	46739074	46739516	B_Cells_Pritchard.1851197	0	.	46739074	46739516	0	1	442	0
chr15	46760586	46762085	MIP101.36765	0	.	46760586	46762085	0	1	1499	0
chr15	46772065	46775181	B_cells_Cheung.107098	0	.	46772065	46775181	0	1	3116	0
chr15	46772608	46773318	K562.23896	0	.	46772608	46773318	0	1	710	0
chr15	46772743	46774263	H1_polyA+.61930	0	.	46772743	46774263	0	1	1520	0
chr15	46772817	46773316	MIP101.36768	0	.	46772817	46773316	0	1	499	0
chr15	46772831	46773278	B_Cells_Pritchard.1851335	0	.	46772831	46773278	0	1	447	0
chr15	46775626	46777979	H1_polyA+.61932	0	.	46775626	46777979	0	1	2353	0
chr15	46776679	46778153	B_cells_Cheung.107100	0	.	46776679	46778153	0	1	1474	0
chr15	46776756	46777679	B_Cells_Pritchard.1851341	0	.	46776756	46777679	0	1	923	0
chr15	46776917	46778098	melanoma_Garraway_short_term_cultures.36337	0	.	46776917	46778098	0	1	1181	0
chr15	46785847	46792454	B_Cells_Pritchard.1851371	0	-	46785847	46792454	0	5	1693,1310,321,348,463	0,1889,3363,3772,6144
chr15	46786866	46788057	REMC_LuminalBreast.54222	0	.	46786866	46788057	0	1	1191	0
chr15	46791680	46792443	MIP101.36774	0	.	46791680	46792443	0	1	763	0
chr15	46791856	46792419	K562.23901	0	.	46791856	46792419	0	1	563	0
chr15	46793358	46794704	H1_polyA+.61936	0	.	46793358	46794704	0	1	1346	0
chr15	46804351	46805242	B_cells_Cheung.107107	0	.	46804351	46805242	0	1	891	0
chr15	46804359	46805254	H1_polyA+.61939	0	.	46804359	46805254	0	1	895	0
chr15	46804380	46805239	B_Cells_Pritchard.1851399	0	.	46804380	46805239	0	1	859	0
chr15	46804541	46805229	BT20_Thompson.11439	0	.	46804541	46805229	0	1	688	0
chr15	46804625	46805666	XR_019240	0	+	46804625	46805666	0	2	311,730	0,311
chr15	46804625	46805666	XR_039716	0	+	46804625	46805666	0	2	313,728	0,313
chr15	46804705	46805233	melanoma_Garraway_short_term_cultures.36344	0	.	46804705	46805233	0	1	528	0
chr15	46804723	46805255	REMC_LuminalBreast.54228	0	.	46804723	46805255	0	1	532	0
chr15	46804731	46805255	REMC_MyoepithelialBreast.51053	0	.	46804731	46805255	0	1	524	0
chr15	46804765	46805254	HeLa_polyA+_Chen.19258	0	.	46804765	46805254	0	1	489	0
chr15	46804767	46805249	H9_polyA+.24030	0	.	46804767	46805249	0	1	482	0
chr15	46804817	46805229	BT474_Burge_Thompson.17682	0	.	46804817	46805229	0	1	412	0
chr15	46804818	46805254	HepG2_Caltech_ENCODE.19351	0	.	46804818	46805254	0	1	436	0
chr15	46804827	46805222	ZR751_Thompson.12844	0	.	46804827	46805222	0	1	395	0
chr15	46804828	46805222	CD4_Plagnol_activated.34179	0	.	46804828	46805222	0	1	394	0
chr15	46804828	46805453	K562.23977	0	.	46804828	46805453	0	1	625	0
chr15	46804828	46805215	prostate_carcinoma.52716	0	.	46804828	46805215	0	1	387	0
chr15	46804828	46805229	MCF7_Burge_Thompson.15907	0	.	46804828	46805229	0	1	401	0
chr15	46804831	46805255	REMC_BreastStem.27436	0	.	46804831	46805255	0	1	424	0
chr15	46804838	46805229	T47D_Burge_Thompson.15262	0	.	46804838	46805229	0	1	391	0
chr15	47051498	47052518	pHIT000025130	0	+	47051498	47052518	0	2	672,285	0,735
chr15	47057017	47059027	REMC_LuminalBreast.54233	0	.	47057017	47059027	0	1	2010	0
chr15	47058060	47059412	REMC_BreastStem.27444	0	.	47058060	47059412	0	1	1352	0
chr15	47060670	47061378	REMC_MyoepithelialBreast.51063	0	.	47060670	47061378	0	1	708	0
chr15	47061526	47062469	REMC_MyoepithelialBreast.51064	0	.	47061526	47062469	0	1	943	0
chr15	47061964	47062724	melanoma_Garraway_short_term_cultures.36378	0	.	47061964	47062724	0	1	760	0
chr15	47727918	47735686	prostate_carcinoma.52799	0	+	47727918	47735686	0	2	53,3658	0,4110
chr15	47729255	47735678	BT474_Burge_Thompson.17712	0	.	47729255	47735678	0	1	6423	0
chr15	47729440	47732563	REMC_MyoepithelialBreast.51139	0	.	47729440	47732563	0	1	3123	0
chr15	47730663	47734301	prostate_normal.30915	0	.	47730663	47734301	0	1	3638	0
chr15	47731186	47735686	prostate_carcinoma.52798	0	.	47731186	47735686	0	1	4500	0
chr15	47731561	47735440	B_Cells_Pritchard.1854065	0	.	47731561	47735440	0	1	3879	0
chr15	47731585	47735381	B_cells_Cheung.107339	0	.	47731585	47735381	0	1	3796	0
chr15	47731627	47733935	HIT000045278	0	+	47731627	47733935	0	1	2308	0
chr15	47732173	47735719	REMC_LuminalBreast.54273	0	.	47732173	47735719	0	1	3546	0
chr15	47873731	47875772	XR_017437	0	+	47873731	47875772	0	2	1764,277	0,1764
chr15	47873731	47875772	XR_039708	0	+	47873731	47875772	0	2	1767,274	0,1767
chr15	47873731	47875772	XR_019267	0	+	47873731	47875772	0	2	1764,277	0,1764
chr15	48316886	48317383	HeLa_polyA+_Chen.19309	0	.	48316886	48317383	0	1	497	0
chr15	48437756	48450820	HeLa_polyA+_Chen.19314	0	.	48437756	48450820	0	1	13064	0
chr15	48437756	48452329	H1_polyA+.62436	0	.	48437756	48452329	0	1	14573	0
chr15	48437804	48452864	REMC_MyoepithelialBreast.51298	0	.	48437804	48452864	0	1	15060	0
chr15	48437808	48450821	BT474_Burge_Thompson.17809	0	+	48437808	48450821	0	3	1047,426,1460	0,8518,11553
chr15	48440711	48450845	HepG2_Caltech_ENCODE.20613	0	+	48440711	48450845	0	2	6041,1484	0,8650
chr15	48443285	48447787	HIT000093680	0	+	48443285	48447787	0	2	2713,931	0,3571
chr15	48443288	48447768	Rinn_00023262	0	+	48443288	48447768	0	2	2709,917	0,3563
chr15	48443289	48447768	ENST00000500703	0	+	48443289	48447768	0	2	2708,916	0,3563
chr15	48444202	48450924	REMC_BreastStem.27523	0	.	48444202	48450924	0	1	6722	0
chr15	48444349	48450828	K562.24021	0	+	48444349	48450828	0	2	3790,829	0,5650
chr15	48446062	48451178	B_cells_Cheung.108372	0	.	48446062	48451178	0	1	5116	0
chr15	48446880	48449761	BT20_Thompson.11461	0	.	48446880	48449761	0	1	2881	0
chr15	48446880	48449818	MDAMB468_Thompson.12971	0	.	48446880	48449818	0	1	2938	0
chr15	48446887	48447587	CD4_Plagnol_activated.34297	0	.	48446887	48447587	0	1	700	0
chr15	48446887	48447521	brain_AmbionMAQC.23445	0	.	48446887	48447521	0	1	634	0
chr15	48446914	48449865	melanoma_Garraway_short_term_cultures.36450	0	.	48446914	48449865	0	1	2951	0
chr15	48446966	48448065	MeWo_Garraway.19310	0	.	48446966	48448065	0	1	1099	0
chr15	48447001	48447738	T47D_Burge_Thompson.15307	0	.	48447001	48447738	0	1	737	0
chr15	48447010	48447597	MDAMB231_Thompson.11998	0	.	48447010	48447597	0	1	587	0
chr15	48447016	48447524	MeI_Garraway.9444	0	.	48447016	48447524	0	1	508	0
chr15	48447141	48447532	liver_polyA+.73146	0	.	48447141	48447532	0	1	391	0
chr15	48447435	48450828	K562.24024	0	.	48447435	48450828	0	1	3393	0
chr15	48448243	48450867	brain_AmbionMAQC.23440	0	.	48448243	48450867	0	1	2624	0
chr15	48448850	48450640	ZR751_Thompson.12889	0	.	48448850	48450640	0	1	1790	0
chr15	48497064	48497570	MIP101.37412	0	+	48497064	48497570	0	2	397,8	0,498
chr15	48497382	48497724	A549_Myers.42383	0	.	48497382	48497724	0	1	342	0
chr15	48916160	48917125	REMC_MyoepithelialBreast.51176	0	.	48916160	48917125	0	1	965	0
chr15	48935863	48936636	B_cells_Cheung.107553	0	.	48935863	48936636	0	1	773	0
chr15	48936064	48938063	B_Cells_Pritchard.1856019	0	.	48936064	48938063	0	1	1999	0
chr15	48939570	48941174	HepG2_Caltech_ENCODE.19429	0	.	48939570	48941174	0	1	1604	0
chr15	48940611	48941270	B_cells_Cheung.107557	0	.	48940611	48941270	0	1	659	0
chr15	48940620	48941194	B_Cells_Pritchard.1856035	0	.	48940620	48941194	0	1	574	0
chr15	48961548	48961991	B_cells_Cheung.107565	0	.	48961548	48961991	0	1	443	0
chr15	48967260	48969543	HepG2_Caltech_ENCODE.19430	0	.	48967260	48969543	0	1	2283	0
chr15	48967304	48969732	H1_polyA+.62185	0	.	48967304	48969732	0	1	2428	0
chr15	48968230	48969546	B_cells_Cheung.107570	0	.	48968230	48969546	0	1	1316	0
chr15	48976701	48977591	REMC_MyoepithelialBreast.51178	0	.	48976701	48977591	0	1	890	0
chr15	49125303	49129061	H1_polyA+.62202	0	.	49125303	49129061	0	1	3758	0
chr15	49129139	49133684	H1_polyA+.62203	0	.	49129139	49133684	0	1	4545	0
chr15	49131655	49132865	HepG2_Caltech_ENCODE.19440	0	.	49131655	49132865	0	1	1210	0
chr15	49188595	49192159	MIP101.36993	0	.	49188595	49192159	0	1	3564	0
chr15	49188807	49191358	H1_polyA+.62229	0	.	49188807	49191358	0	1	2551	0
chr15	49189496	49189989	MCF7_Burge_Thompson.15992	0	.	49189496	49189989	0	1	493	0
chr15	49189551	49189926	H1_rRNA-depleted_UCSD_REMC.48166	0	.	49189551	49189926	0	1	375	0
chr15	49193615	49195383	H1_polyA+.62231	0	.	49193615	49195383	0	1	1768	0
chr15	49198580	49200423	H1_polyA+.62233	0	.	49198580	49200423	0	1	1843	0
chr15	49231759	49232929	H1_polyA+.62242	0	.	49231759	49232929	0	1	1170	0
chr15	49244527	49245702	H1_polyA+.62243	0	.	49244527	49245702	0	1	1175	0
chr15	49267148	49268176	H1_polyA+.62245	0	.	49267148	49268176	0	1	1028	0
chr15	49269918	49270264	A549_Myers.42462	0	.	49269918	49270264	0	1	346	0
chr15	49270512	49271537	H1_polyA+.62247	0	.	49270512	49271537	0	1	1025	0
chr15	49281099	49283057	H1_polyA+.62248	0	.	49281099	49283057	0	1	1958	0
chr15	50013197	50014328	melanoma_Garraway_short_term_cultures.36571	0	.	50013197	50014328	0	1	1131	0
chr15	50013201	50015291	CD4_Plagnol_resting.33612	0	.	50013201	50015291	0	1	2090	0
chr15	50013203	50014494	H1_polyA+.62362	0	.	50013203	50014494	0	1	1291	0
chr15	50155347	50163815	REMC_BreastStem.27672	0	.	50155347	50163815	0	1	8468	0
chr15	50155382	50159516	REMC_LuminalBreast.54466	0	.	50155382	50159516	0	1	4134	0
chr15	50157310	50159413	B_Cells_Pritchard.1858935	0	+	50157310	50159413	0	1	2103	0
chr15	50170333	50171564	B_cells_Cheung.107837	0	.	50170333	50171564	0	1	1231	0
chr15	50180353	50182184	REMC_LuminalBreast.54474	0	.	50180353	50182184	0	1	1831	0
chr15	50181130	50182327	B_cells_Cheung.107843	0	.	50181130	50182327	0	1	1197	0
chr15	50181237	50182541	REMC_BreastStem.27679	0	.	50181237	50182541	0	1	1304	0
chr15	50181497	50182252	B_Cells_Pritchard.1859005	0	+	50181497	50182252	0	1	755	0
chr15	50182006	50183767	REMC_MyoepithelialBreast.51269	0	.	50182006	50183767	0	1	1761	0
chr15	50183237	50184464	REMC_LuminalBreast.54476	0	.	50183237	50184464	0	1	1227	0
chr15	50183850	50184464	REMC_MyoepithelialBreast.51270	0	.	50183850	50184464	0	1	614	0
chr15	50193551	50194438	liver_polyA+.73351	0	.	50193551	50194438	0	1	887	0
chr15	50194179	50196432	CD4_Plagnol_resting.33505	0	.	50194179	50196432	0	1	2253	0
chr15	50194576	50196394	MIP101.37058	0	.	50194576	50196394	0	1	1818	0
chr15	50194613	50196439	CD4_Plagnol_activated.34384	0	.	50194613	50196439	0	1	1826	0
chr15	50194615	50196453	HepG2_Caltech_ENCODE.19514	0	.	50194615	50196453	0	1	1838	0
chr15	50194807	50196204	MCF7_Burge_Thompson.16051	0	.	50194807	50196204	0	1	1397	0
chr15	50195091	50195917	liver_polyA+.73356	0	.	50195091	50195917	0	1	826	0
chr15	50195167	50196281	HeLa_polyA+_Chen.19388	0	.	50195167	50196281	0	1	1114	0
chr15	50195219	50195928	A549_Myers.42547	0	.	50195219	50195928	0	1	709	0
chr15	50195224	50196407	MCF10A_Thompson.11699	0	.	50195224	50196407	0	1	1183	0
chr15	50196686	50198106	CD4_Plagnol_resting.33506	0	.	50196686	50198106	0	1	1420	0
chr15	50196693	50198108	CD4_Plagnol_activated.34385	0	.	50196693	50198108	0	1	1415	0
chr15	50196694	50198092	liver_polyA+.73359	0	.	50196694	50198092	0	1	1398	0
chr15	50196697	50198090	prostate_carcinoma.52962	0	.	50196697	50198090	0	1	1393	0
chr15	50196698	50198010	REMC_BreastStem.27683	0	.	50196698	50198010	0	1	1312	0
chr15	50196701	50198101	melanoma_Garraway_short_term_cultures.36613	0	.	50196701	50198101	0	1	1400	0
chr15	50196716	50198107	MIP101.37059	0	.	50196716	50198107	0	1	1391	0
chr15	50196716	50197980	MCF10A_Thompson.11700	0	.	50196716	50197980	0	1	1264	0
chr15	50196716	50198229	HeLa_polyA+_Chen.19385	0	.	50196716	50198229	0	1	1513	0
chr15	50196867	50197856	prostate_normal.31035	0	.	50196867	50197856	0	1	989	0
chr15	50198067	50198840	REMC_BreastStem.27684	0	.	50198067	50198840	0	1	773	0
chr15	50198311	50198797	HeLa_polyA+_Chen.19386	0	.	50198311	50198797	0	1	486	0
chr15	50198381	50198830	BT474_Burge_Thompson.17801	0	.	50198381	50198830	0	1	449	0
chr15	50198425	50198829	liver_polyA+.73357	0	.	50198425	50198829	0	1	404	0
chr15	50379399	50381891	REMC_MyoepithelialBreast.51411	0	.	50379399	50381891	0	1	2492	0
chr15	50652814	50654140	REMC_BreastStem.27753	0	.	50652814	50654140	0	1	1326	0
chr15	50654661	50655658	REMC_BreastStem.27754	0	.	50654661	50655658	0	1	997	0
chr15	50767786	50768626	prostate_carcinoma.53057	0	.	50767786	50768626	0	1	840	0
chr15	50768258	50769122	Rinn_00023410	0	+	50768258	50769122	0	2	255,273	0,591
chr15	50829382	50834201	melanoma_Garraway_short_term_cultures.36699	0	.	50829382	50834201	0	1	4819	0
chr15	50831917	50834232	H9_polyA+.24208	0	.	50831917	50834232	0	1	2315	0
chr15	50833649	50834231	kidney_Gilad.47401	0	.	50833649	50834231	0	1	582	0
chr15	50833651	50834189	MeWo_Garraway.19427	0	.	50833651	50834189	0	1	538	0
chr15	50873101	50874153	liver_polyA+.73573	0	.	50873101	50874153	0	1	1052	0
chr15	50873635	50874153	kidney_Gilad.47369	0	.	50873635	50874153	0	1	518	0
chr15	50873762	50875264	H1_polyA+.62406	0	.	50873762	50875264	0	1	1502	0
chr15	50874289	50937148	pHIT000114321	0	-	50874289	50937148	0	10	335,156,130,26,89,130,60,70,137,85	0,806,1107,1575,9408,10984,44029,53212,55609,62774
chr15	50874354	50874672	testes_Burge.27936	0	.	50874354	50874672	0	1	318	0
chr15	50875362	50876877	H1_polyA+.62407	0	.	50875362	50876877	0	1	1515	0
chr15	50877613	50878111	H9_polyA+.24213	0	.	50877613	50878111	0	1	498	0
chr15	50877616	50937148	pHIT000114323	0	-	50877616	50937148	0	7	320,89,130,60,70,137,85	0,6081,7657,40702,49885,52282,59447
chr15	50877843	50883833	H1_polyA+.62393	0	.	50877843	50883833	0	1	5990	0
chr15	50878633	50879260	liver_polyA+.73575	0	.	50878633	50879260	0	1	627	0
chr15	50879511	50885254	Rinn_00023680	0	-	50879511	50885254	0	4	895,90,303,98	0,4185,4470,5645
chr15	50879638	50884986	liver_polyA+.73572	0	-	50879638	50884986	0	3	768,587,120	0,4059,5228
chr15	50879677	50881190	kidney_Gilad.47376	0	.	50879677	50881190	0	1	1513	0
chr15	50880984	50881549	A549_Myers.42652	0	.	50880984	50881549	0	1	565	0
chr15	50882883	50885254	Rinn_00023681	0	-	50882883	50885254	0	4	453,90,303,98	0,813,1098,2273
chr15	50884056	50884374	H1_rRNA-depleted_UCSD_REMC.48327	0	.	50884056	50884374	0	1	318	0
chr15	50918318	50941585	pHIT000114325	0	-	50918318	50941585	0	6	60,70,238,151,85,51	0,9183,9640,16434,18745,23216
chr15	50976283	51017262	pHIT000114324	0	-	50976283	51017262	0	2	252,396	0,40583
chr15	50976283	51017864	pHIT000114326	0	-	50976283	51017864	0	3	252,302,217	0,40583,41364
chr15	51016351	51017451	B_cells_Cheung.108022	0	.	51016351	51017451	0	1	1100	0
chr15	51016354	51018036	H1_polyA+.62410	0	.	51016354	51018036	0	1	1682	0
chr15	51016356	51018026	MeWo_Garraway.19432	0	.	51016356	51018026	0	1	1670	0
chr15	51016359	51017189	CD4_Plagnol_activated.34447	0	.	51016359	51017189	0	1	830	0
chr15	51016364	51018025	melanoma_Garraway_short_term_cultures.36706	0	.	51016364	51018025	0	1	1661	0
chr15	51117076	51117984	kidney_Gilad.47389	0	.	51117076	51117984	0	1	908	0
chr15	51117076	51117994	liver_polyA+.73591	0	.	51117076	51117994	0	1	918	0
chr15	51289467	51291478	melanoma_Garraway_short_term_cultures.36707	0	.	51289467	51291478	0	1	2011	0
chr15	51982165	51982922	prostate_carcinoma.53065	0	.	51982165	51982922	0	1	757	0
chr15	51990257	51994201	HIT000046660	0	+	51990257	51994201	0	1	3944	0
chr15	52879589	52880577	REMC_MyoepithelialBreast.51479	0	.	52879589	52880577	0	1	988	0
chr15	53122485	53123853	REMC_MyoepithelialBreast.51531	0	.	53122485	53123853	0	1	1368	0
chr15	53180214	53181214	REMC_MyoepithelialBreast.51533	0	.	53180214	53181214	0	1	1000	0
chr15	53182367	53234705	pHIT000025193	0	+	53182367	53234705	0	4	82,80,103,146	0,853,5515,52192
chr15	53186987	53188840	REMC_MyoepithelialBreast.51536	0	.	53186987	53188840	0	1	1853	0
chr15	53201415	53202977	REMC_LuminalBreast.54582	0	.	53201415	53202977	0	1	1562	0
chr15	53201847	53206071	REMC_MyoepithelialBreast.51543	0	.	53201847	53206071	0	1	4224	0
chr15	53203104	53205595	REMC_LuminalBreast.54583	0	.	53203104	53205595	0	1	2491	0
chr15	53206395	53207311	REMC_MyoepithelialBreast.51544	0	.	53206395	53207311	0	1	916	0
chr15	53213569	53216402	REMC_LuminalBreast.54586	0	.	53213569	53216402	0	1	2833	0
chr15	53220795	53221668	REMC_LuminalBreast.54587	0	.	53220795	53221668	0	1	873	0
chr15	53242175	53244498	REMC_LuminalBreast.54593	0	.	53242175	53244498	0	1	2323	0
chr15	53242225	53243246	REMC_BreastStem.27722	0	.	53242225	53243246	0	1	1021	0
chr15	53242240	53243513	melanoma_Garraway_short_term_cultures.36714	0	.	53242240	53243513	0	1	1273	0
chr15	53245861	53246269	B_cells_Cheung.108168	0	.	53245861	53246269	0	1	408	0
chr15	53247680	53250677	REMC_BreastStem.27724	0	.	53247680	53250677	0	1	2997	0
chr15	53247815	53250725	B_cells_Cheung.108170	0	.	53247815	53250725	0	1	2910	0
chr15	53248782	53250210	CD4_Plagnol_resting.33632	0	.	53248782	53250210	0	1	1428	0
chr15	53249390	53249939	K562.24108	0	.	53249390	53249939	0	1	549	0
chr15	53251448	53257666	HIT000055359	0	-	53251448	53257666	0	2	4768,1070	0,5148
chr15	53251461	53257665	Rinn_00023278	0	-	53251461	53257665	0	2	4768,1052	0,5152
chr15	53251462	53257665	ENST00000509188	0	-	53251462	53257665	0	2	4767,1051	0,5152
chr15	53252546	53255627	B_cells_Cheung.108172	0	.	53252546	53255627	0	1	3081	0
chr15	53253245	53253843	CD4_Plagnol_activated.34455	0	.	53253245	53253843	0	1	598	0
chr15	53277910	53280002	REMC_LuminalBreast.54597	0	.	53277910	53280002	0	1	2092	0
chr15	53590238	53594004	Rinn_00023685	0	-	53590238	53594004	0	2	3194,248	0,3518
chr15	53592979	53595119	REMC_MyoepithelialBreast.51564	0	.	53592979	53595119	0	1	2140	0
chr15	53593186	53600009	REMC_BreastStem.27747	0	.	53593186	53600009	0	1	6823	0
chr15	53595232	53596693	REMC_MyoepithelialBreast.51565	0	.	53595232	53596693	0	1	1461	0
chr15	53596851	53598315	REMC_MyoepithelialBreast.51566	0	.	53596851	53598315	0	1	1464	0
chr15	53600169	53616442	REMC_BreastStem.27748	0	.	53600169	53616442	0	1	16273	0
chr15	53602202	53603549	REMC_MyoepithelialBreast.51568	0	.	53602202	53603549	0	1	1347	0
chr15	53603924	53607242	REMC_MyoepithelialBreast.51569	0	.	53603924	53607242	0	1	3318	0
chr15	53606527	53607145	melanoma_Garraway_short_term_cultures.36783	0	.	53606527	53607145	0	1	618	0
chr15	54115141	54115709	HeLa_polyA+_Chen.19476	0	.	54115141	54115709	0	1	568	0
chr15	54127053	54127488	HeLa_polyA+_Chen.19479	0	.	54127053	54127488	0	1	435	0
chr15	54557498	54558939	REMC_LuminalBreast.54770	0	.	54557498	54558939	0	1	1441	0
chr15	54598169	54598877	B_cells_Cheung.108413	0	.	54598169	54598877	0	1	708	0
chr15	54601998	54604575	REMC_LuminalBreast.54778	0	.	54601998	54604575	0	1	2577	0
chr15	54632926	54635045	REMC_LuminalBreast.54780	0	.	54632926	54635045	0	1	2119	0
chr15	54939157	54997138	ENST00000508706	0	-	54939157	54997138	0	4	1873,154,148,109	0,30346,57397,57872
chr15	54939157	54997138	HIT000013220	0	-	54939157	54997138	0	4	1873,154,148,109	0,30346,57397,57872
chr15	54939985	54941033	REMC_LuminalBreast.54840	0	.	54939985	54941033	0	1	1048	0
chr15	54950806	54953436	H1_polyA+.62551	0	.	54950806	54953436	0	1	2630	0
chr15	54958690	54960856	REMC_LuminalBreast.54843	0	.	54958690	54960856	0	1	2166	0
chr15	54959860	54960800	H1_polyA+.62556	0	.	54959860	54960800	0	1	940	0
chr15	54961271	54963574	H1_polyA+.62557	0	.	54961271	54963574	0	1	2303	0
chr15	54964176	54967667	REMC_LuminalBreast.54845	0	.	54964176	54967667	0	1	3491	0
chr15	54964176	54969658	REMC_LuminalBreast.54846	0	-	54964176	54969658	0	2	3238,155	0,5327
chr15	54965287	54968070	H1_polyA+.62769	0	.	54965287	54968070	0	1	2783	0
chr15	54965659	54997989	ENST00000504158	0	-	54965659	54997989	0	4	1755,154,148,960	0,3844,30895,31370
chr15	54965659	54997990	HIT000021512	0	-	54965659	54997990	0	4	1755,154,148,961	0,3844,30895,31370
chr15	54965659	54997989	NR_015419	0	-	54965659	54997989	0	4	1755,154,148,960	0,3844,30895,31370
chr15	54965865	54967644	B_Cells_Pritchard.1870201	0	-	54965865	54967644	0	1	1779	0
chr15	54965931	54966931	REMC_MyoepithelialBreast.51733	0	.	54965931	54966931	0	1	1000	0
chr15	54966390	54967866	B_cells_Cheung.108499	0	.	54966390	54967866	0	1	1476	0
chr15	54966403	54967386	A549_Myers.42826	0	.	54966403	54967386	0	1	983	0
chr15	54966560	54967706	prostate_carcinoma.53218	0	.	54966560	54967706	0	1	1146	0
chr15	54966984	54967629	prostate_normal.31171	0	.	54966984	54967629	0	1	645	0
chr15	54966994	54967560	T47D_Burge_Thompson.15436	0	.	54966994	54967560	0	1	566	0
chr15	54966994	54967696	HepG2_Caltech_ENCODE.19623	0	.	54966994	54967696	0	1	702	0
chr15	54966997	54967713	REMC_MyoepithelialBreast.51729	0	.	54966997	54967713	0	1	716	0
chr15	54966997	54969635	REMC_MyoepithelialBreast.51728	0	-	54966997	54969635	0	2	417,132	0,2506
chr15	54981565	54982825	REMC_LuminalBreast.54847	0	.	54981565	54982825	0	1	1260	0
chr15	54987817	54989753	REMC_MyoepithelialBreast.51790	0	.	54987817	54989753	0	1	1936	0
chr15	54988321	54989493	B_Cells_Pritchard.1870827	0	+	54988321	54989493	0	1	1172	0
chr15	54988767	54989437	B_cells_Cheung.108504	0	.	54988767	54989437	0	1	670	0
chr15	54988874	54990551	REMC_BreastStem.27856	0	.	54988874	54990551	0	1	1677	0
chr15	54989378	54990209	REMC_LuminalBreast.54851	0	.	54989378	54990209	0	1	831	0
chr15	54990419	54993664	REMC_MyoepithelialBreast.51791	0	.	54990419	54993664	0	1	3245	0
chr15	54990464	54997950	REMC_LuminalBreast.54852	0	-	54990464	54997950	0	2	6238,921	0,6565
chr15	54991474	54993899	REMC_BreastStem.27857	0	.	54991474	54993899	0	1	2425	0
chr15	54992653	54993749	B_cells_Cheung.108508	0	.	54992653	54993749	0	1	1096	0
chr15	54992658	54993599	melanoma_Garraway_short_term_cultures.36889	0	.	54992658	54993599	0	1	941	0
chr15	54992663	54993725	prostate_carcinoma.53225	0	.	54992663	54993725	0	1	1062	0
chr15	54996162	54997619	HIT000261002	0	-	54996162	54997619	0	2	540,590	0,867
chr15	54996226	54996704	ZR751_Thompson.12997	0	.	54996226	54996704	0	1	478	0
chr15	54996237	54998027	MCF10A_Thompson.11794	0	-	54996237	54998027	0	2	465,1113	0,677
chr15	55369725	55370660	HeLa_polyA+_Chen.19515	0	.	55369725	55370660	0	1	935	0
chr15	55369759	55370892	CD4_Plagnol_resting.33728	0	.	55369759	55370892	0	1	1133	0
chr15	55369841	55370831	prostate_normal.31197	0	.	55369841	55370831	0	1	990	0
chr15	55369843	55370922	CD4_Plagnol_activated.34637	0	.	55369843	55370922	0	1	1079	0
chr15	55369852	55373664	melanoma_Garraway_short_term_cultures.36913	0	.	55369852	55373664	0	1	3812	0
chr15	55369861	55370879	liver_polyA+.73983	0	.	55369861	55370879	0	1	1018	0
chr15	55370106	55371221	MCF10A_Thompson.11797	0	.	55370106	55371221	0	1	1115	0
chr15	55370139	55370735	K562.24244	0	.	55370139	55370735	0	1	596	0
chr15	55370227	55370564	A549_Myers.42853	0	.	55370227	55370564	0	1	337	0
chr15	55375938	55376986	CD4_Plagnol_resting.33731	0	.	55375938	55376986	0	1	1048	0
chr15	55376450	55379776	H1_polyA+.62922	0	+	55376450	55379776	0	2	37,1061	0,2265
chr15	55377684	55379776	H1_polyA+.62921	0	.	55377684	55379776	0	1	2092	0
chr15	55377728	55379790	MIP101.37398	0	.	55377728	55379790	0	1	2062	0
chr15	55377850	55379679	HepG2_Caltech_ENCODE.19627	0	.	55377850	55379679	0	1	1829	0
chr15	55378248	55379773	prostate_normal.31199	0	.	55378248	55379773	0	1	1525	0
chr15	55378345	55379675	melanoma_Garraway_short_term_cultures.36917	0	.	55378345	55379675	0	1	1330	0
chr15	55378358	55379119	liver_polyA+.73990	0	.	55378358	55379119	0	1	761	0
chr15	55378603	55379496	REMC_BreastStem.27810	0	.	55378603	55379496	0	1	893	0
chr15	55378732	55379403	CD4_Plagnol_activated.34642	0	.	55378732	55379403	0	1	671	0
chr15	55379078	55379765	CD4_Plagnol_resting.33732	0	.	55379078	55379765	0	1	687	0
chr15	55379329	55387259	Rinn_00023420	0	+	55379329	55387259	0	2	1085,4869	0,3061
chr15	55379329	55387259	Rinn_00023419	0	+	55379329	55387259	0	3	1085,4168,229	0,3061,7701
chr15	55379488	55388009	Rinn_00023422	0	+	55379488	55388009	0	3	3015,3970,979	0,3100,7542
chr15	55379488	55386558	Rinn_00023421	0	+	55379488	55386558	0	4	926,170,666,3970	0,1439,2349,3100
chr15	55379793	55387276	Rinn_00023945	0	+	55379793	55387276	0	5	621,714,33,323,246	0,1996,2795,6442,7237
chr15	55379793	55387276	Rinn_00023944	0	+	55379793	55387276	0	6	621,155,113,33,323,246	0,1134,2597,2795,6442,7237
chr15	55379793	55387276	Rinn_00023946	0	+	55379793	55387276	0	5	621,666,33,323,246	0,2044,2795,6442,7237
chr15	55379793	55387276	Rinn_00023947	0	+	55379793	55387276	0	5	621,113,33,323,246	0,2597,2795,6442,7237
chr15	55379839	55387259	Rinn_00023949	0	+	55379839	55387259	0	4	575,1150,323,229	0,2551,6396,7191
chr15	55379853	55387257	Rinn_00023228	0	+	55379853	55387257	0	3	561,1751,227	0,4954,7177
chr15	55379912	55387252	REMC_LuminalBreast.54855	0	.	55379912	55387252	0	1	7340	0
chr15	55379918	55387543	B_cells_Cheung.109025	0	.	55379918	55387543	0	1	7625	0
chr15	55379995	55387237	Rinn_00023424	0	+	55379995	55387237	0	3	419,323,207	0,6240,7035
chr15	55380037	55380380	brain_AmbionMAQC.23650	0	.	55380037	55380380	0	1	343	0
chr15	55382510	55382845	NEC_from_H9.40604	0	.	55382510	55382845	0	1	335	0
chr15	55382561	55387255	Rinn_00023950	0	+	55382561	55387255	0	3	82,323,225	0,3674,4469
chr15	55383071	55387257	Rinn_00023263	0	+	55383071	55387257	0	3	1036,652,227	0,2835,3959
chr15	55383072	55387257	HIT000043573	0	+	55383072	55387257	0	3	1035,652,226	0,2834,3959
chr15	55383878	55386839	H1_polyA+.62607	0	.	55383878	55386839	0	1	2961	0
chr15	55384029	55385093	CD4_Plagnol_resting.33735	0	.	55384029	55385093	0	1	1064	0
chr15	55384030	55385173	HepG2_Caltech_ENCODE.19629	0	.	55384030	55385173	0	1	1143	0
chr15	55384051	55385123	REMC_BreastStem.27813	0	.	55384051	55385123	0	1	1072	0
chr15	55384052	55385097	MIP101.37401	0	.	55384052	55385097	0	1	1045	0
chr15	55384078	55385144	CD4_Plagnol_activated.34650	0	.	55384078	55385144	0	1	1066	0
chr15	55384096	55385104	melanoma_Garraway_short_term_cultures.36921	0	.	55384096	55385104	0	1	1008	0
chr15	55384214	55387248	HIT000015382	0	-	55384214	55387248	0	2	1931,211	0,2823
chr15	55384704	55385028	A549_Myers.42860	0	.	55384704	55385028	0	1	324	0
chr15	55384712	55385100	lymph_node_Burge.25919	0	.	55384712	55385100	0	1	388	0
chr15	55385182	55387509	REMC_BreastStem.27812	0	.	55385182	55387509	0	1	2327	0
chr15	55385241	55386779	HepG2_Caltech_ENCODE.19631	0	.	55385241	55386779	0	1	1538	0
chr15	55385266	55387253	CD4_Plagnol_resting.33738	0	.	55385266	55387253	0	1	1987	0
chr15	55385271	55386899	CD4_Plagnol_activated.34652	0	.	55385271	55386899	0	1	1628	0
chr15	55385280	55387238	NEC_from_H9.40609	0	+	55385280	55387238	0	3	80,66,207	0,1212,1751
chr15	55385381	55387252	lymph_node_Burge.25922	0	.	55385381	55387252	0	1	1871	0
chr15	55385583	55386629	brain_AmbionMAQC.23665	0	.	55385583	55386629	0	1	1046	0
chr15	55385789	55387277	HIT000026661	0	+	55385789	55387277	0	1	1488	0
chr15	55386042	55386690	BT474_Burge_Thompson.17874	0	.	55386042	55386690	0	1	648	0
chr15	55386053	55386461	MB435_Burge.22093	0	.	55386053	55386461	0	1	408	0
chr15	55386340	55387540	melanoma_Garraway_short_term_cultures.36923	0	.	55386340	55387540	0	1	1200	0
chr15	55386438	55386978	A549_Myers.42862	0	.	55386438	55386978	0	1	540	0
chr15	55388274	55388953	B_cells_Cheung.108557	0	.	55388274	55388953	0	1	679	0
chr15	55398370	55399116	B_Cells_Pritchard.1876691	0	-	55398370	55399116	0	1	746	0
chr15	55398419	55404514	Rinn_00023426	0	+	55398419	55404514	0	4	408,224,88,176	0,3974,4915,5919
chr15	55399678	55400002	A549_Myers.42866	0	.	55399678	55400002	0	1	324	0
chr15	55400954	55401293	B_cells_Cheung.108560	0	.	55400954	55401293	0	1	339	0
chr15	55402342	55404469	B_Cells_Pritchard.1871343	0	.	55402342	55404469	0	1	2127	0
chr15	55402828	55403203	A549_Myers.42868	0	.	55402828	55403203	0	1	375	0
chr15	55404798	55405113	B_cells_Cheung.108561	0	.	55404798	55405113	0	1	315	0
chr15	55406324	55406896	B_cells_Cheung.108563	0	.	55406324	55406896	0	1	572	0
chr15	55633298	55633618	H1_rRNA-depleted_UCSD_REMC.48500	0	.	55633298	55633618	0	1	320	0
chr15	55633444	55635170	HIT000285065	0	-	55633444	55635170	0	1	1726	0
chr15	55636055	55636920	REMC_MyoepithelialBreast.51748	0	.	55636055	55636920	0	1	865	0
chr15	55639134	55640664	REMC_LuminalBreast.54931	0	.	55639134	55640664	0	1	1530	0
chr15	55639254	55641342	H1_polyA+.62765	0	.	55639254	55641342	0	1	2088	0
chr15	55640664	55644007	REMC_LuminalBreast.54932	0	.	55640664	55644007	0	1	3343	0
chr15	55644007	55655035	REMC_LuminalBreast.54933	0	.	55644007	55655035	0	1	11028	0
chr15	55645601	55646954	REMC_MyoepithelialBreast.51753	0	.	55645601	55646954	0	1	1353	0
chr15	55646090	55647014	prostate_carcinoma.53559	0	.	55646090	55647014	0	1	924	0
chr15	55649748	55654382	prostate_normal.31231	0	+	55649748	55654382	0	2	524,1500	0,3134
chr15	55652555	55654075	H1_polyA+.62669	0	.	55652555	55654075	0	1	1520	0
chr15	55652882	55654382	prostate_normal.31230	0	.	55652882	55654382	0	1	1500	0
chr15	56363491	56365742	melanoma_Garraway_short_term_cultures.36968	0	.	56363491	56365742	0	1	2251	0
chr15	56370560	56371549	melanoma_Garraway_short_term_cultures.36970	0	.	56370560	56371549	0	1	989	0
chr15	56372932	56374049	melanoma_Garraway_short_term_cultures.36971	0	.	56372932	56374049	0	1	1117	0
chr15	56372947	56373412	prostate_carcinoma.53465	0	.	56372947	56373412	0	1	465	0
chr15	56372958	56373621	kidney_Gilad.47765	0	.	56372958	56373621	0	1	663	0
chr15	56380228	56380819	liver_polyA+.74190	0	.	56380228	56380819	0	1	591	0
chr15	56380388	56381577	melanoma_Garraway_short_term_cultures.36974	0	.	56380388	56381577	0	1	1189	0
chr15	56389673	56390483	liver_polyA+.74202	0	.	56389673	56390483	0	1	810	0
chr15	56391253	56394676	melanoma_Garraway_short_term_cultures.36977	0	.	56391253	56394676	0	1	3423	0
chr15	56395590	56397348	REMC_LuminalBreast.54981	0	.	56395590	56397348	0	1	1758	0
chr15	56395881	56397282	melanoma_Garraway_short_term_cultures.36978	0	.	56395881	56397282	0	1	1401	0
chr15	56395933	56396684	prostate_carcinoma.53474	0	.	56395933	56396684	0	1	751	0
chr15	56395991	56397995	kidney_Gilad.47793	0	-	56395991	56397995	0	3	598,110,223	0,838,1781
chr15	56396861	56397302	prostate_carcinoma.53475	0	.	56396861	56397302	0	1	441	0
chr15	56398186	56398571	kidney_Gilad.47782	0	.	56398186	56398571	0	1	385	0
chr15	56404419	56411495	melanoma_Garraway_short_term_cultures.36982	0	.	56404419	56411495	0	1	7076	0
chr15	56409180	56411063	liver_polyA+.74220	0	.	56409180	56411063	0	1	1883	0
chr15	56409725	56411472	prostate_carcinoma.53479	0	.	56409725	56411472	0	1	1747	0
chr15	56410322	56410929	A549_Myers.42932	0	.	56410322	56410929	0	1	607	0
chr15	56410520	56411580	REMC_LuminalBreast.54978	0	.	56410520	56411580	0	1	1060	0
chr15	56410565	56411258	MeWo_Garraway.19521	0	.	56410565	56411258	0	1	693	0
chr15	56410664	56411497	MDAMB468_Thompson.13123	0	.	56410664	56411497	0	1	833	0
chr15	56410665	56411497	MIP101.37326	0	.	56410665	56411497	0	1	832	0
chr15	56422925	56423599	B_Cells_Pritchard.1874001	0	.	56422925	56423599	0	1	674	0
chr15	56427585	56428582	B_Cells_Pritchard.1874017	0	.	56427585	56428582	0	1	997	0
chr15	56434148	56435449	B_Cells_Pritchard.1874047	0	.	56434148	56435449	0	1	1301	0
chr15	56436378	56436798	B_cells_Cheung.108634	0	.	56436378	56436798	0	1	420	0
chr15	56448454	56449094	B_cells_Cheung.108623	0	.	56448454	56449094	0	1	640	0
chr15	56480249	56480965	B_Cells_Pritchard.1874231	0	.	56480249	56480965	0	1	716	0
chr15	56481080	56482290	B_Cells_Pritchard.1874233	0	.	56481080	56482290	0	1	1210	0
chr15	56484402	56487634	pHIT000114346	0	-	56484402	56487634	0	3	80,270,256	0,2506,2976
chr15	57205634	57208357	H1_polyA+.63310	0	.	57205634	57208357	0	1	2723	0
chr15	57206498	57208373	REMC_BreastStem.27942	0	.	57206498	57208373	0	1	1875	0
chr15	57206507	57207146	HeLa_polyA+_Chen.19594	0	.	57206507	57207146	0	1	639	0
chr15	57206623	57207104	melanoma_Garraway_short_term_cultures.37035	0	.	57206623	57207104	0	1	481	0
chr15	57206748	57207113	BT20_Thompson.11668	0	.	57206748	57207113	0	1	365	0
chr15	57206748	57209186	B_cells_Cheung.109544	0	.	57206748	57209186	0	3	436,1102,773	0,493,1665
chr15	57208463	57209443	REMC_BreastStem.27943	0	.	57208463	57209443	0	1	980	0
chr15	57208464	57209426	H1_polyA+.63311	0	.	57208464	57209426	0	1	962	0
chr15	57208465	57209412	HeLa_polyA+_Chen.19597	0	.	57208465	57209412	0	1	947	0
chr15	57208500	57209377	melanoma_Garraway_short_term_cultures.37037	0	.	57208500	57209377	0	1	877	0
chr15	57209564	57210104	H1_rRNA-depleted_UCSD_REMC.48585	0	.	57209564	57210104	0	1	540	0
chr15	57209567	57210138	BT20_Thompson.11670	0	.	57209567	57210138	0	1	571	0
chr15	57210425	57211784	H9_polyA+.24374	0	.	57210425	57211784	0	1	1359	0
chr15	57210434	57211250	HeLa_polyA-_Chen.10449	0	.	57210434	57211250	0	1	816	0
chr15	57210655	57211248	T47D_Burge_Thompson.15479	0	.	57210655	57211248	0	1	593	0
chr15	57210697	57211800	MCF10A_Thompson.11859	0	.	57210697	57211800	0	1	1103	0
chr15	57210918	57211628	HepG2_Caltech_ENCODE.19690	0	.	57210918	57211628	0	1	710	0
chr15	57210965	57211837	A549_Myers.43074	0	.	57210965	57211837	0	1	872	0
chr15	57212043	57214302	MCF10A_Thompson.11860	0	.	57212043	57214302	0	1	2259	0
chr15	57212768	57213286	MCF7_Burge_Thompson.16258	0	.	57212768	57213286	0	1	518	0
chr15	57705682	57706301	A549_Myers.43106	0	.	57705682	57706301	0	1	619	0
chr15	57709540	57710576	REMC_MyoepithelialBreast.51896	0	.	57709540	57710576	0	1	1036	0
chr15	57709848	57710921	REMC_BreastStem.27908	0	.	57709848	57710921	0	1	1073	0
chr15	57711702	57713060	REMC_LuminalBreast.55226	0	.	57711702	57713060	0	1	1358	0
chr15	57712186	57713165	REMC_BreastStem.27909	0	.	57712186	57713165	0	1	979	0
chr15	57774072	57775693	REMC_LuminalBreast.55237	0	.	57774072	57775693	0	1	1621	0
chr15	58080232	58081920	H1_polyA+.62939	0	.	58080232	58081920	0	1	1688	0
chr15	58348682	58349525	REMC_MyoepithelialBreast.51910	0	.	58348682	58349525	0	1	843	0
chr15	58352102	58353029	REMC_BreastStem.27923	0	.	58352102	58353029	0	1	927	0
chr15	58352621	58353138	REMC_MyoepithelialBreast.51913	0	.	58352621	58353138	0	1	517	0
chr15	58389319	58392671	REMC_MyoepithelialBreast.51919	0	.	58389319	58392671	0	1	3352	0
chr15	58389840	58392658	REMC_BreastStem.27925	0	.	58389840	58392658	0	1	2818	0
chr15	58389967	58392666	REMC_LuminalBreast.55242	0	.	58389967	58392666	0	1	2699	0
chr15	58392814	58412498	REMC_MyoepithelialBreast.51920	0	.	58392814	58412498	0	1	19684	0
chr15	58394329	58396093	REMC_LuminalBreast.55243	0	.	58394329	58396093	0	1	1764	0
chr15	58405326	58411156	REMC_BreastStem.27930	0	.	58405326	58411156	0	1	5830	0
chr15	58411731	58412083	REMC_LuminalBreast.55248	0	.	58411731	58412083	0	1	352	0
chr15	58412769	58413730	REMC_MyoepithelialBreast.51921	0	.	58412769	58413730	0	1	961	0
chr15	58413465	58414099	REMC_LuminalBreast.55251	0	.	58413465	58414099	0	1	634	0
chr15	58413836	58414144	REMC_MyoepithelialBreast.51922	0	.	58413836	58414144	0	1	308	0
chr15	58419651	58421764	REMC_BreastStem.27933	0	.	58419651	58421764	0	1	2113	0
chr15	58487364	58488785	REMC_MyoepithelialBreast.51972	0	.	58487364	58488785	0	1	1421	0
chr15	58487974	58488909	REMC_LuminalBreast.55261	0	.	58487974	58488909	0	1	935	0
chr15	58497024	58498011	B_cells_Cheung.108988	0	.	58497024	58498011	0	1	987	0
chr15	58497576	58498005	H1_rRNA-depleted_UCSD_REMC.48650	0	.	58497576	58498005	0	1	429	0
chr15	58562177	58562513	H1_rRNA-depleted_UCSD_REMC.48674	0	.	58562177	58562513	0	1	336	0
chr15	59614970	59615431	A549_Myers.43157	0	.	59614970	59615431	0	1	461	0
chr15	59919864	59920219	B_Cells_Pritchard.1882237	0	.	59919864	59920219	0	1	355	0
chr15	59920634	59923520	REMC_LuminalBreast.55490	0	.	59920634	59923520	0	1	2886	0
chr15	59920731	59921594	B_Cells_Pritchard.1882243	0	.	59920731	59921594	0	1	863	0
chr15	60275634	60282809	HIT000092310	0	-	60275634	60282809	0	4	619,118,69,1566	0,785,2660,5609
chr15	60275664	60282809	ENST00000514405	0	-	60275664	60282809	0	4	591,116,71,1562	0,757,2630,5583
chr15	60289413	60290549	Rinn_00024132	0	-	60289413	60290549	0	2	292,749	0,387
chr15	60303763	60304492	testes_Burge.28139	0	.	60303763	60304492	0	1	729	0
chr15	60325066	60325384	MB435_Burge.22217	0	.	60325066	60325384	0	1	318	0
chr15	60325133	60325722	MDAMB231_Thompson.12248	0	.	60325133	60325722	0	1	589	0
chr15	60328344	60330232	melanoma_Garraway_short_term_cultures.37248	0	-	60328344	60330232	0	2	76,415	0,1473
chr15	60329822	60330213	B_Cells_Pritchard.1882699	0	.	60329822	60330213	0	1	391	0
chr15	60332430	60333186	MDAMB231_Thompson.12239	0	.	60332430	60333186	0	1	756	0
chr15	60334548	60335502	B_Cells_Pritchard.1882709	0	-	60334548	60335502	0	3	67,108,479	0,260,475
chr15	60337442	60340906	HIT000045950	0	+	60337442	60340906	0	1	3464	0
chr15	60349223	60350567	melanoma_Garraway_short_term_cultures.37256	0	.	60349223	60350567	0	1	1344	0
chr15	60422578	60422983	A549_Myers.43244	0	.	60422578	60422983	0	1	405	0
chr15	60462720	60470493	prostate_carcinoma.53863	0	-	60462720	60470493	0	2	45,775	0,6998
chr15	60465546	60472039	REMC_BreastStem.28047	0	.	60465546	60472039	0	1	6493	0
chr15	60468394	60470377	B_Cells_Pritchard.1883031	0	.	60468394	60470377	0	1	1983	0
chr15	60469294	60470498	prostate_carcinoma.53864	0	.	60469294	60470498	0	1	1204	0
chr15	60469362	60471118	MIP101.37489	0	.	60469362	60471118	0	1	1756	0
chr15	60469453	60470483	A549_Myers.43245	0	.	60469453	60470483	0	1	1030	0
chr15	60469507	60470265	T47D_Burge_Thompson.15513	0	.	60469507	60470265	0	1	758	0
chr15	60469968	60470326	MCF10A_Thompson.11831	0	.	60469968	60470326	0	1	358	0
chr15	60469975	60470375	MCF7_Burge_Thompson.16262	0	.	60469975	60470375	0	1	400	0
chr15	60470011	60470376	brain_AmbionMAQC.23776	0	.	60470011	60470376	0	1	365	0
chr15	60470044	60470374	B_cells_Cheung.109250	0	.	60470044	60470374	0	1	330	0
chr15	60470522	60471312	B_Cells_Pritchard.1883033	0	.	60470522	60471312	0	1	790	0
chr15	60470598	60471807	A549_Myers.43246	0	.	60470598	60471807	0	1	1209	0
chr15	60470658	60471375	B_cells_Cheung.109251	0	.	60470658	60471375	0	1	717	0
chr15	60470752	60471570	BT20_Thompson.11640	0	.	60470752	60471570	0	1	818	0
chr15	60470882	60507756	pHIT000025255	0	-	60470882	60507756	0	3	156,298,62	0,594,36812
chr15	60470886	60507756	pHIT000088687	0	-	60470886	60507756	0	3	152,298,62	0,590,36808
chr15	60471304	60472537	MIP101.37490	0	.	60471304	60472537	0	1	1233	0
chr15	60503657	60504124	B_Cells_Pritchard.1883097	0	.	60503657	60504124	0	1	467	0
chr15	60534553	60535511	prostate_carcinoma.53876	0	.	60534553	60535511	0	1	958	0
chr15	60537000	60538026	prostate_carcinoma.53878	0	.	60537000	60538026	0	1	1026	0
chr15	60537598	60538337	B_Cells_Pritchard.1883243	0	.	60537598	60538337	0	1	739	0
chr15	60537900	60538394	B_cells_Cheung.109263	0	.	60537900	60538394	0	1	494	0
chr15	60548273	60548586	B_cells_Cheung.109268	0	.	60548273	60548586	0	1	313	0
chr15	60548838	60549203	B_cells_Cheung.109269	0	.	60548838	60549203	0	1	365	0
chr15	60924976	60930958	REMC_LuminalBreast.55529	0	-	60924976	60930958	0	2	232,3902	0,2080
chr15	60931188	60939458	REMC_LuminalBreast.55530	0	.	60931188	60939458	0	1	8270	0
chr15	60940378	60967647	REMC_LuminalBreast.55533	0	+	60940378	60967647	0	2	26174,731	0,26538
chr15	60940378	60967647	REMC_LuminalBreast.55532	0	-	60940378	60967647	0	2	26139,420	0,26849
chr15	60940378	60967647	REMC_LuminalBreast.55531	0	.	60940378	60967647	0	1	27269	0
chr15	60976277	60977120	A549_Myers.43320	0	.	60976277	60977120	0	1	843	0
chr15	60976539	60977083	REMC_MyoepithelialBreast.52019	0	.	60976539	60977083	0	1	544	0
chr15	61040275	61040755	A549_Myers.43329	0	.	61040275	61040755	0	1	480	0
chr15	61054776	61055124	A549_Myers.43332	0	.	61054776	61055124	0	1	348	0
chr15	61391060	61400019	REMC_LuminalBreast.55603	0	.	61391060	61400019	0	1	8959	0
chr15	61392817	61395071	REMC_MyoepithelialBreast.52078	0	.	61392817	61395071	0	1	2254	0
chr15	61396381	61397098	REMC_BreastStem.28087	0	.	61396381	61397098	0	1	717	0
chr15	61396412	61397888	REMC_MyoepithelialBreast.52080	0	.	61396412	61397888	0	1	1476	0
chr15	61397202	61398530	BT474_Burge_Thompson.18066	0	.	61397202	61398530	0	1	1328	0
chr15	61397285	61398484	REMC_BreastStem.28088	0	.	61397285	61398484	0	1	1199	0
chr15	61469345	61517563	T47D_Burge_Thompson.15548	0	+	61469345	61517563	0	6	168,61,81,481,237,1352	0,4757,8293,40768,42058,46866
chr15	61477638	61517537	ZR751_Thompson.13094	0	+	61477638	61517537	0	3	81,237,1326	0,33765,38573
chr15	61489767	61490141	T47D_Burge_Thompson.15555	0	.	61489767	61490141	0	1	374	0
chr15	61510425	61517552	Rinn_00023441	0	+	61510425	61517552	0	3	169,238,1342	0,977,5785
chr15	61516215	61517537	BT474_Burge_Thompson.17993	0	.	61516215	61517537	0	1	1322	0
chr15	61516220	61517515	REMC_LuminalBreast.55616	0	.	61516220	61517515	0	1	1295	0
chr15	61516228	61517530	MCF7_Burge_Thompson.16294	0	.	61516228	61517530	0	1	1302	0
chr15	61516730	61517329	prostate_carcinoma.53937	0	.	61516730	61517329	0	1	599	0
chr15	61528974	61529550	A549_Myers.43391	0	.	61528974	61529550	0	1	576	0
chr15	61554234	61554563	B_Cells_Pritchard.1885923	0	.	61554234	61554563	0	1	329	0
chr15	61556802	61558089	REMC_BreastStem.28091	0	.	61556802	61558089	0	1	1287	0
chr15	61569924	61571285	prostate_carcinoma.53939	0	.	61569924	61571285	0	1	1361	0
chr15	61570028	61571190	B_cells_Cheung.109409	0	.	61570028	61571190	0	1	1162	0
chr15	61571382	61573478	prostate_carcinoma.53940	0	.	61571382	61573478	0	1	2096	0
chr15	61571802	61573364	REMC_BreastStem.28093	0	.	61571802	61573364	0	1	1562	0
chr15	61572707	61573369	B_cells_Cheung.109412	0	.	61572707	61573369	0	1	662	0
chr15	61578126	61578786	B_cells_Cheung.109417	0	.	61578126	61578786	0	1	660	0
chr15	61578258	61578627	prostate_carcinoma.53944	0	.	61578258	61578627	0	1	369	0
chr15	61582151	61582834	liver_polyA+.75266	0	.	61582151	61582834	0	1	683	0
chr15	61684078	61685476	REMC_BreastStem.28172	0	.	61684078	61685476	0	1	1398	0
chr15	61684864	61685413	testes_Burge.28226	0	.	61684864	61685413	0	1	549	0
chr15	61924335	61926287	REMC_LuminalBreast.55710	0	.	61924335	61926287	0	1	1952	0
chr15	61934367	61939408	REMC_LuminalBreast.55714	0	.	61934367	61939408	0	1	5041	0
chr15	61935965	61937254	B_cells_Cheung.109492	0	.	61935965	61937254	0	1	1289	0
chr15	61937727	61940543	B_cells_Cheung.109494	0	.	61937727	61940543	0	1	2816	0
chr15	61956909	61966149	REMC_LuminalBreast.55720	0	.	61956909	61966149	0	1	9240	0
chr15	61956922	61957556	B_cells_Cheung.109504	0	.	61956922	61957556	0	1	634	0
chr15	61956931	61957438	B_Cells_Pritchard.1886807	0	.	61956931	61957438	0	1	507	0
chr15	61957473	61958684	REMC_MyoepithelialBreast.52102	0	.	61957473	61958684	0	1	1211	0
chr15	61957704	61958832	B_cells_Cheung.109505	0	.	61957704	61958832	0	1	1128	0
chr15	61957732	61960627	B_Cells_Pritchard.1886809	0	-	61957732	61960627	0	2	992,72	0,2823
chr15	61957779	61958499	H1_polyA+.63418	0	.	61957779	61958499	0	1	720	0
chr15	61958852	61961193	HIT000005626	0	+	61958852	61961193	0	1	2341	0
chr15	61959821	61960600	B_cells_Cheung.109507	0	.	61959821	61960600	0	1	779	0
chr15	61963547	61966147	B_cells_Cheung.109511	0	.	61963547	61966147	0	1	2600	0
chr15	61966345	61970560	REMC_LuminalBreast.55721	0	.	61966345	61970560	0	1	4215	0
chr15	61966370	61968500	B_cells_Cheung.109510	0	.	61966370	61968500	0	1	2130	0
chr15	61966504	61975757	K562.24416	0	-	61966504	61975757	0	3	4311,39,400	0,8086,8853
chr15	61966621	61967306	B_Cells_Pritchard.1886835	0	.	61966621	61967306	0	1	685	0
chr15	61966701	61967260	prostate_carcinoma.53985	0	.	61966701	61967260	0	1	559	0
chr15	61967460	61968438	B_Cells_Pritchard.1886837	0	.	61967460	61968438	0	1	978	0
chr15	61969691	61970818	B_cells_Cheung.109513	0	.	61969691	61970818	0	1	1127	0
chr15	61970645	61974558	REMC_LuminalBreast.55722	0	.	61970645	61974558	0	1	3913	0
chr15	61972079	61972497	B_cells_Cheung.109514	0	.	61972079	61972497	0	1	418	0
chr15	61972487	61972845	B_Cells_Pritchard.1886859	0	.	61972487	61972845	0	1	358	0
chr15	61974388	61976175	B_Cells_Pritchard.1886865	0	.	61974388	61976175	0	1	1787	0
chr15	61974711	61979139	REMC_LuminalBreast.55723	0	.	61974711	61979139	0	1	4428	0
chr15	61975139	61975987	B_cells_Cheung.109516	0	.	61975139	61975987	0	1	848	0
chr15	61976191	61976756	A549_Myers.43458	0	.	61976191	61976756	0	1	565	0
chr15	61976343	61976791	B_Cells_Pritchard.1886867	0	.	61976343	61976791	0	1	448	0
chr15	62130531	62131053	A549_Myers.43487	0	.	62130531	62131053	0	1	522	0
chr15	62224703	62226958	REMC_MyoepithelialBreast.52371	0	.	62224703	62226958	0	1	2255	0
chr15	62225796	62226942	REMC_LuminalBreast.55754	0	.	62225796	62226942	0	1	1146	0
chr15	62226072	62226718	B_cells_Cheung.110125	0	.	62226072	62226718	0	1	646	0
chr15	63120166	63123200	REMC_MyoepithelialBreast.52251	0	.	63120166	63123200	0	1	3034	0
chr15	63162434	63167797	prostate_carcinoma.54283	0	.	63162434	63167797	0	1	5363	0
chr15	63162522	63163539	melanoma_Garraway_short_term_cultures.37584	0	.	63162522	63163539	0	1	1017	0
chr15	63162767	63164299	brain_AmbionMAQC.23881	0	.	63162767	63164299	0	1	1532	0
chr15	63162864	63163798	CD4_Plagnol_resting.34160	0	.	63162864	63163798	0	1	934	0
chr15	63163104	63164123	B_Cells_Pritchard.1890321	0	.	63163104	63164123	0	1	1019	0
chr15	63164055	63164616	MeWo_Garraway.19740	0	.	63164055	63164616	0	1	561	0
chr15	63164235	63165391	B_Cells_Pritchard.1890323	0	.	63164235	63165391	0	1	1156	0
chr15	63165896	63166873	MIP101.37703	0	.	63165896	63166873	0	1	977	0
chr15	63166132	63166719	brain_AmbionMAQC.23883	0	.	63166132	63166719	0	1	587	0
chr15	63166193	63166689	A549_Myers.43650	0	.	63166193	63166689	0	1	496	0
chr15	63168468	63169334	prostate_carcinoma.54284	0	.	63168468	63169334	0	1	866	0
chr15	63168785	63169514	B_cells_Cheung.109855	0	.	63168785	63169514	0	1	729	0
chr15	63169596	63170684	REMC_MyoepithelialBreast.52257	0	.	63169596	63170684	0	1	1088	0
chr15	63188891	63193184	REMC_LuminalBreast.55947	0	.	63188891	63193184	0	1	4293	0
chr15	63189617	63189938	REMC_MyoepithelialBreast.52262	0	.	63189617	63189938	0	1	321	0
chr15	63191375	63191773	CD4_Plagnol_resting.34191	0	.	63191375	63191773	0	1	398	0
chr15	63192959	63193320	B_cells_Cheung.109873	0	.	63192959	63193320	0	1	361	0
chr15	63291973	63292293	A549_Myers.43681	0	.	63291973	63292293	0	1	320	0
chr15	63293322	63294220	prostate_carcinoma.54221	0	.	63293322	63294220	0	1	898	0
chr15	63299591	63300215	REMC_LuminalBreast.55967	0	.	63299591	63300215	0	1	624	0
chr15	63302351	63302896	B_Cells_Pritchard.1890549	0	-	63302351	63302896	0	1	545	0
chr15	63304176	63305159	REMC_BreastStem.28276	0	.	63304176	63305159	0	1	983	0
chr15	63304474	63304993	A549_Myers.43683	0	.	63304474	63304993	0	1	519	0
chr15	63367839	63369348	B_cells_Cheung.109932	0	.	63367839	63369348	0	1	1509	0
chr15	63376678	63380208	melanoma_Garraway_short_term_cultures.37612	0	.	63376678	63380208	0	1	3530	0
chr15	63376878	63380888	REMC_LuminalBreast.55974	0	.	63376878	63380888	0	1	4010	0
chr15	63377674	63378461	H1_polyA+.63657	0	.	63377674	63378461	0	1	787	0
chr15	63378131	63378914	HepG2_Caltech_ENCODE.19860	0	.	63378131	63378914	0	1	783	0
chr15	63378161	63380067	B_cells_Cheung.109943	0	.	63378161	63380067	0	1	1906	0
chr15	63380305	63382191	REMC_MyoepithelialBreast.52279	0	.	63380305	63382191	0	1	1886	0
chr15	63387135	63388743	REMC_MyoepithelialBreast.52281	0	.	63387135	63388743	0	1	1608	0
chr15	63390898	63392582	REMC_MyoepithelialBreast.52283	0	.	63390898	63392582	0	1	1684	0
chr15	63401242	63401566	A549_Myers.43693	0	.	63401242	63401566	0	1	324	0
chr15	64660116	64660956	MIP101.37811	0	.	64660116	64660956	0	1	840	0
chr15	64661481	64662495	HepG2_Caltech_ENCODE.19918	0	.	64661481	64662495	0	1	1014	0
chr15	64661556	64662520	K562.24543	0	.	64661556	64662520	0	1	964	0
chr15	64661581	64765230	HIT000089130	0	+	64661581	64765230	0	5	59,91,114,44,569	0,82172,86151,101809,103080
chr15	64666489	64669189	K562.24546	0	.	64666489	64669189	0	1	2700	0
chr15	64667167	64668124	BT20_Thompson.11764	0	.	64667167	64668124	0	1	957	0
chr15	64667704	64668226	HepG2_Caltech_ENCODE.19919	0	.	64667704	64668226	0	1	522	0
chr15	64667725	64669094	prostate_carcinoma.54369	0	.	64667725	64669094	0	1	1369	0
chr15	64668472	64668817	A549_Myers.43868	0	.	64668472	64668817	0	1	345	0
chr15	64677042	64678259	K562.24552	0	.	64677042	64678259	0	1	1217	0
chr15	64678531	64681414	K562.24553	0	.	64678531	64681414	0	1	2883	0
chr15	64682053	64682972	K562.24554	0	.	64682053	64682972	0	1	919	0
chr15	64688861	64690056	K562.24558	0	.	64688861	64690056	0	1	1195	0
chr15	64693079	64695713	K562.24559	0	.	64693079	64695713	0	1	2634	0
chr15	64697970	64699663	K562.24561	0	.	64697970	64699663	0	1	1693	0
chr15	64697970	64700124	K562.24563	0	+	64697970	64700124	0	2	902,31	0,2123
chr15	64698783	64699375	A549_Myers.43874	0	.	64698783	64699375	0	1	592	0
chr15	64700031	64701449	K562.24562	0	.	64700031	64701449	0	1	1418	0
chr15	64708072	64708634	K562.24566	0	.	64708072	64708634	0	1	562	0
chr15	64708738	64710692	K562.24567	0	.	64708738	64710692	0	1	1954	0
chr15	64709725	64710225	A549_Myers.43875	0	.	64709725	64710225	0	1	500	0
chr15	64712136	64714607	K562.24568	0	.	64712136	64714607	0	1	2471	0
chr15	64714860	64715496	K562.24569	0	.	64714860	64715496	0	1	636	0
chr15	64720456	64721833	K562.24571	0	.	64720456	64721833	0	1	1377	0
chr15	64723244	64724088	K562.24572	0	.	64723244	64724088	0	1	844	0
chr15	64725612	64726946	K562.24573	0	.	64725612	64726946	0	1	1334	0
chr15	64726612	64726933	A549_Myers.43878	0	.	64726612	64726933	0	1	321	0
chr15	64728702	64729696	K562.24575	0	.	64728702	64729696	0	1	994	0
chr15	64729927	64730293	A549_Myers.43879	0	.	64729927	64730293	0	1	366	0
chr15	64738214	64739195	K562.24584	0	.	64738214	64739195	0	1	981	0
chr15	64738255	64738809	MCF7_Burge_Thompson.16416	0	.	64738255	64738809	0	1	554	0
chr15	64739612	64761168	HIT000020990	0	+	64739612	64761168	0	5	2612,48,91,114,187	0,2764,4141,8120,21369
chr15	64739613	64761168	ENST00000511020	0	+	64739613	64761168	0	5	2616,43,91,114,187	0,2768,4140,8119,21368
chr15	64743749	64748616	K562.24589	0	+	64743749	64748616	0	2	95,884	0,3983
chr15	64748837	64754301	K562.24590	0	+	64748837	64754301	0	2	1095,3609	0,1855
chr15	64748837	64750265	K562.24591	0	.	64748837	64750265	0	1	1428	0
chr15	64750638	64751964	HepG2_Caltech_ENCODE.19920	0	.	64750638	64751964	0	1	1326	0
chr15	64754773	64756452	K562.24592	0	.	64754773	64756452	0	1	1679	0
chr15	64756683	64761350	K562.24593	0	.	64756683	64761350	0	1	4667	0
chr15	64758888	64759679	prostate_carcinoma.54372	0	.	64758888	64759679	0	1	791	0
chr15	64762132	64764097	prostate_carcinoma.54375	0	.	64762132	64764097	0	1	1965	0
chr15	64769016	64770268	K562.24597	0	.	64769016	64770268	0	1	1252	0
chr15	64770800	64771420	K562.24598	0	.	64770800	64771420	0	1	620	0
chr15	64882658	64883250	A549_Myers.43931	0	.	64882658	64883250	0	1	592	0
chr15	64888069	64888648	pHIT000114444	0	+	64888069	64888648	0	1	579	0
chr15	64889007	64889849	pHIT000114445	0	+	64889007	64889849	0	2	109,551	0,291
chr15	64920660	64921805	REMC_MyoepithelialBreast.52538	0	.	64920660	64921805	0	1	1145	0
chr15	64921174	64921557	A549_Myers.43936	0	.	64921174	64921557	0	1	383	0
chr15	64921625	64923454	A549_Myers.43937	0	.	64921625	64923454	0	1	1829	0
chr15	64922280	64927626	REMC_LuminalBreast.56182	0	.	64922280	64927626	0	1	5346	0
chr15	64922380	64925725	prostate_carcinoma.54391	0	.	64922380	64925725	0	1	3345	0
chr15	64924799	64925783	REMC_BreastStem.28405	0	.	64924799	64925783	0	1	984	0
chr15	64924956	64929486	REMC_MyoepithelialBreast.52540	0	.	64924956	64929486	0	1	4530	0
chr15	64924985	64925742	prostate_normal.31760	0	.	64924985	64925742	0	1	757	0
chr15	64924992	64925901	melanoma_Garraway_short_term_cultures.37748	0	.	64924992	64925901	0	1	909	0
chr15	64925055	64925630	HeLa_polyA+_Chen.19871	0	.	64925055	64925630	0	1	575	0
chr15	64925889	64927938	REMC_BreastStem.28406	0	.	64925889	64927938	0	1	2049	0
chr15	64926849	64927964	MeWo_Garraway.19844	0	.	64926849	64927964	0	1	1115	0
chr15	64926869	64946650	prostate_carcinoma.54394	0	-	64926869	64946650	0	2	1818,65	0,19716
chr15	64926925	64927575	prostate_normal.31761	0	.	64926925	64927575	0	1	650	0
chr15	64927010	64928681	melanoma_Garraway_short_term_cultures.37750	0	.	64927010	64928681	0	1	1671	0
chr15	64927760	64929098	REMC_LuminalBreast.56183	0	.	64927760	64929098	0	1	1338	0
chr15	64928803	64929449	melanoma_Garraway_short_term_cultures.37751	0	.	64928803	64929449	0	1	646	0
chr15	64928946	64929619	HeLa_polyA+_Chen.19874	0	.	64928946	64929619	0	1	673	0
chr15	64928976	64930376	MIP101.37819	0	.	64928976	64930376	0	1	1400	0
chr15	64929048	64931011	prostate_normal.31762	0	.	64929048	64931011	0	1	1963	0
chr15	64929182	64932296	REMC_LuminalBreast.56184	0	.	64929182	64932296	0	1	3114	0
chr15	64929324	64932392	prostate_carcinoma.54392	0	.	64929324	64932392	0	1	3068	0
chr15	64929550	64932400	melanoma_Garraway_short_term_cultures.37752	0	.	64929550	64932400	0	1	2850	0
chr15	64929557	64930761	REMC_MyoepithelialBreast.52541	0	.	64929557	64930761	0	1	1204	0
chr15	64930193	64934962	REMC_BreastStem.28409	0	.	64930193	64934962	0	1	4769	0
chr15	64930531	64930974	A549_Myers.43941	0	.	64930531	64930974	0	1	443	0
chr15	64930812	64932054	REMC_MyoepithelialBreast.52542	0	.	64930812	64932054	0	1	1242	0
chr15	64932443	64935157	REMC_LuminalBreast.56185	0	.	64932443	64935157	0	1	2714	0
chr15	64932657	64935163	REMC_MyoepithelialBreast.52543	0	.	64932657	64935163	0	1	2506	0
chr15	64933432	64934998	melanoma_Garraway_short_term_cultures.37753	0	.	64933432	64934998	0	1	1566	0
chr15	64933456	64933948	HeLa_polyA+_Chen.19875	0	.	64933456	64933948	0	1	492	0
chr15	64933506	64935028	prostate_carcinoma.54393	0	.	64933506	64935028	0	1	1522	0
chr15	64933843	64934383	prostate_normal.31764	0	.	64933843	64934383	0	1	540	0
chr15	64933888	64934432	MeWo_Garraway.19847	0	.	64933888	64934432	0	1	544	0
chr15	64936219	64938771	REMC_LuminalBreast.56187	0	.	64936219	64938771	0	1	2552	0
chr15	64936244	64937836	REMC_BreastStem.28410	0	.	64936244	64937836	0	1	1592	0
chr15	64936273	64937384	REMC_MyoepithelialBreast.52544	0	.	64936273	64937384	0	1	1111	0
chr15	64938865	64944351	REMC_LuminalBreast.56188	0	.	64938865	64944351	0	1	5486	0
chr15	64939694	64946434	HIT000055003	0	+	64939694	64946434	0	1	6740	0
chr15	64940050	64941187	REMC_BreastStem.28413	0	.	64940050	64941187	0	1	1137	0
chr15	64940286	64946529	REMC_MyoepithelialBreast.52547	0	.	64940286	64946529	0	1	6243	0
chr15	64940356	64941298	prostate_carcinoma.54398	0	.	64940356	64941298	0	1	942	0
chr15	64940414	64941021	HeLa_polyA+_Chen.19877	0	.	64940414	64941021	0	1	607	0
chr15	64941046	64944200	melanoma_Garraway_short_term_cultures.37756	0	.	64941046	64944200	0	1	3154	0
chr15	64941573	64944019	REMC_BreastStem.28414	0	.	64941573	64944019	0	1	2446	0
chr15	64942235	64943869	MeWo_Garraway.19851	0	.	64942235	64943869	0	1	1634	0
chr15	64944304	64946478	melanoma_Garraway_short_term_cultures.37757	0	.	64944304	64946478	0	1	2174	0
chr15	64944463	64946497	REMC_LuminalBreast.56189	0	.	64944463	64946497	0	1	2034	0
chr15	64945098	64946095	prostate_carcinoma.54400	0	.	64945098	64946095	0	1	997	0
chr15	64945562	64946424	MeWo_Garraway.19841	0	.	64945562	64946424	0	1	862	0
chr15	64945569	64946682	REMC_BreastStem.28416	0	.	64945569	64946682	0	1	1113	0
chr15	64946582	64947052	REMC_LuminalBreast.56190	0	.	64946582	64947052	0	1	470	0
chr15	64946728	64947112	REMC_MyoepithelialBreast.52548	0	.	64946728	64947112	0	1	384	0
chr15	64947325	64948763	REMC_LuminalBreast.56191	0	.	64947325	64948763	0	1	1438	0
chr15	64947333	64948881	REMC_BreastStem.28417	0	.	64947333	64948881	0	1	1548	0
chr15	64947396	64950213	melanoma_Garraway_short_term_cultures.37758	0	.	64947396	64950213	0	1	2817	0
chr15	64947560	64948554	REMC_MyoepithelialBreast.52549	0	.	64947560	64948554	0	1	994	0
chr15	64950543	64951091	melanoma_Garraway_short_term_cultures.37759	0	.	64950543	64951091	0	1	548	0
chr15	64955634	64957078	melanoma_Garraway_short_term_cultures.37762	0	.	64955634	64957078	0	1	1444	0
chr15	64956114	64959618	REMC_LuminalBreast.56194	0	.	64956114	64959618	0	1	3504	0
chr15	64956473	64957389	REMC_MyoepithelialBreast.52554	0	.	64956473	64957389	0	1	916	0
chr15	64959006	64959897	REMC_BreastStem.28421	0	.	64959006	64959897	0	1	891	0
chr15	64959348	64960243	melanoma_Garraway_short_term_cultures.37765	0	.	64959348	64960243	0	1	895	0
chr15	64959530	64961026	REMC_MyoepithelialBreast.52556	0	.	64959530	64961026	0	1	1496	0
chr15	64959680	64961555	REMC_LuminalBreast.56195	0	.	64959680	64961555	0	1	1875	0
chr15	64960620	64960977	A549_Myers.43956	0	.	64960620	64960977	0	1	357	0
chr15	64960724	64962286	melanoma_Garraway_short_term_cultures.37766	0	.	64960724	64962286	0	1	1562	0
chr15	64961075	64963412	REMC_BreastStem.28422	0	.	64961075	64963412	0	1	2337	0
chr15	64961655	64963662	REMC_LuminalBreast.56196	0	.	64961655	64963662	0	1	2007	0
chr15	64962564	64963370	melanoma_Garraway_short_term_cultures.37768	0	.	64962564	64963370	0	1	806	0
chr15	64962587	64963209	MeWo_Garraway.19854	0	.	64962587	64963209	0	1	622	0
chr15	64987650	64988310	melanoma_Garraway_short_term_cultures.37771	0	.	64987650	64988310	0	1	660	0
chr15	65001455	65003531	prostate_carcinoma.54403	0	.	65001455	65003531	0	1	2076	0
chr15	65001662	65003899	melanoma_Garraway_short_term_cultures.37772	0	.	65001662	65003899	0	1	2237	0
chr15	65002831	65003489	prostate_normal.31765	0	.	65002831	65003489	0	1	658	0
chr15	65004171	65014366	prostate_carcinoma.54406	0	+	65004171	65014366	0	2	1474,9	0,10186
chr15	65004171	65005655	prostate_carcinoma.54405	0	.	65004171	65005655	0	1	1484	0
chr15	65004342	65005364	melanoma_Garraway_short_term_cultures.37773	0	.	65004342	65005364	0	1	1022	0
chr15	65004375	65004678	A549_Myers.43964	0	.	65004375	65004678	0	1	303	0
chr15	65011587	65012459	melanoma_Garraway_short_term_cultures.37777	0	.	65011587	65012459	0	1	872	0
chr15	65011717	65012532	prostate_carcinoma.54409	0	.	65011717	65012532	0	1	815	0
chr15	65011861	65012630	A549_Myers.43969	0	.	65011861	65012630	0	1	769	0
chr15	65023302	65023857	A549_Myers.43972	0	.	65023302	65023857	0	1	555	0
chr15	65044535	65045203	A549_Myers.43976	0	.	65044535	65045203	0	1	668	0
chr15	65063522	65067042	liver_polyA+.75987	0	.	65063522	65067042	0	1	3520	0
chr15	65067198	65068286	liver_polyA+.75989	0	.	65067198	65068286	0	1	1088	0
chr15	65074156	65074803	B_Cells_Pritchard.1895253	0	.	65074156	65074803	0	1	647	0
chr15	65074322	65074689	liver_polyA+.75994	0	.	65074322	65074689	0	1	367	0
chr15	65074741	65075862	liver_polyA+.75995	0	.	65074741	65075862	0	1	1121	0
chr15	65092240	65093148	liver_polyA+.75980	0	.	65092240	65093148	0	1	908	0
chr15	65093015	65093447	A549_Myers.43979	0	.	65093015	65093447	0	1	432	0
chr15	65093862	65094419	HepG2_Caltech_ENCODE.19929	0	.	65093862	65094419	0	1	557	0
chr15	65097595	65097950	A549_Myers.43980	0	.	65097595	65097950	0	1	355	0
chr15	65101712	65102316	liver_polyA+.76078	0	.	65101712	65102316	0	1	604	0
chr15	65102803	65103807	A549_Myers.43983	0	.	65102803	65103807	0	1	1004	0
chr15	65103192	65103569	liver_polyA+.76079	0	.	65103192	65103569	0	1	377	0
chr15	65106099	65106757	HepG2_Caltech_ENCODE.19938	0	.	65106099	65106757	0	1	658	0
chr15	65108900	65110807	liver_polyA+.76085	0	.	65108900	65110807	0	1	1907	0
chr15	65109384	65110945	HepG2_Caltech_ENCODE.19939	0	.	65109384	65110945	0	1	1561	0
chr15	65111812	65112885	liver_polyA+.76087	0	.	65111812	65112885	0	1	1073	0
chr15	65112286	65112892	HepG2_Caltech_ENCODE.19941	0	.	65112286	65112892	0	1	606	0
chr15	65113091	65113573	A549_Myers.43984	0	.	65113091	65113573	0	1	482	0
chr15	65113537	65114894	HepG2_Caltech_ENCODE.19942	0	.	65113537	65114894	0	1	1357	0
chr15	65115187	65115874	HepG2_Caltech_ENCODE.19943	0	.	65115187	65115874	0	1	687	0
chr15	65116231	65120188	HepG2_Caltech_ENCODE.19944	0	.	65116231	65120188	0	1	3957	0
chr15	65116453	65120749	liver_polyA+.76088	0	+	65116453	65120749	0	2	3786,26	0,4270
chr15	65128355	65128676	liver_polyA+.76099	0	.	65128355	65128676	0	1	321	0
chr15	65129580	65130245	kidney_Gilad.48821	0	.	65129580	65130245	0	1	665	0
chr15	65129580	65131395	liver_polyA+.76101	0	.	65129580	65131395	0	1	1815	0
chr15	65138476	65138988	prostate_carcinoma.54410	0	.	65138476	65138988	0	1	512	0
chr15	65138538	65138984	A549_Myers.43991	0	.	65138538	65138984	0	1	446	0
chr15	65276000	65278161	CD4_Plagnol_resting.34358	0	.	65276000	65278161	0	1	2161	0
chr15	65592006	65592770	B_cells_Cheung.110346	0	.	65592006	65592770	0	1	764	0
chr15	65594217	65594663	B_cells_Cheung.110349	0	.	65594217	65594663	0	1	446	0
chr15	65594822	65595850	B_cells_Cheung.110350	0	.	65594822	65595850	0	1	1028	0
chr15	65888581	65889587	prostate_carcinoma.54545	0	.	65888581	65889587	0	1	1006	0
chr15	65888661	65889257	REMC_LuminalBreast.56268	0	.	65888661	65889257	0	1	596	0
chr15	65888785	65889617	melanoma_Garraway_short_term_cultures.37834	0	.	65888785	65889617	0	1	832	0
chr15	65889966	65891116	B_cells_Cheung.110453	0	.	65889966	65891116	0	1	1150	0
chr15	65890045	65890988	prostate_carcinoma.54546	0	.	65890045	65890988	0	1	943	0
chr15	65890146	65890955	MIP101.37933	0	.	65890146	65890955	0	1	809	0
chr15	65890357	65891039	B_Cells_Pritchard.1897523	0	.	65890357	65891039	0	1	682	0
chr15	65891152	65891873	H1_polyA+.63866	0	.	65891152	65891873	0	1	721	0
chr15	65891168	65892210	B_cells_Cheung.110454	0	.	65891168	65892210	0	1	1042	0
chr15	65891207	65892048	B_Cells_Pritchard.1897525	0	.	65891207	65892048	0	1	841	0
chr15	65891340	65891923	brain_AmbionMAQC.24014	0	.	65891340	65891923	0	1	583	0
chr15	65891358	65892986	prostate_carcinoma.54547	0	.	65891358	65892986	0	1	1628	0
chr15	65892295	65893168	MIP101.37934	0	.	65892295	65893168	0	1	873	0
chr15	65892629	65893519	B_cells_Cheung.110456	0	.	65892629	65893519	0	1	890	0
chr15	65893908	65895295	B_cells_Cheung.110458	0	.	65893908	65895295	0	1	1387	0
chr15	65894043	65894933	MIP101.37935	0	.	65894043	65894933	0	1	890	0
chr15	65894074	65894985	B_Cells_Pritchard.1897537	0	.	65894074	65894985	0	1	911	0
chr15	65894104	65895120	melanoma_Garraway_short_term_cultures.37835	0	.	65894104	65895120	0	1	1016	0
chr15	65897309	65897780	MIP101.37937	0	.	65897309	65897780	0	1	471	0
chr15	65897388	65898155	prostate_carcinoma.54550	0	.	65897388	65898155	0	1	767	0
chr15	65914669	65915171	A549_Myers.44119	0	.	65914669	65915171	0	1	502	0
chr15	65915224	65915716	A549_Myers.44120	0	.	65915224	65915716	0	1	492	0
chr15	65919686	65920184	A549_Myers.44123	0	.	65919686	65920184	0	1	498	0
chr15	65919780	65921477	B_cells_Cheung.110465	0	.	65919780	65921477	0	1	1697	0
chr15	65919790	65920114	B_Cells_Pritchard.1897635	0	-	65919790	65920114	0	1	324	0
chr15	65921758	65923262	B_Cells_Pritchard.1897629	0	.	65921758	65923262	0	1	1504	0
chr15	65922032	65922760	B_cells_Cheung.110467	0	.	65922032	65922760	0	1	728	0
chr15	65923501	65923925	B_cells_Cheung.110468	0	.	65923501	65923925	0	1	424	0
chr15	65931214	65933754	B_cells_Cheung.110473	0	.	65931214	65933754	0	1	2540	0
chr15	65938485	65939812	B_cells_Cheung.110478	0	.	65938485	65939812	0	1	1327	0
chr15	65942413	65943709	B_cells_Cheung.110482	0	.	65942413	65943709	0	1	1296	0
chr15	65942742	65943649	A549_Myers.44128	0	.	65942742	65943649	0	1	907	0
chr15	65949090	65949656	B_cells_Cheung.110486	0	.	65949090	65949656	0	1	566	0
chr15	65953018	65953548	B_cells_Cheung.110490	0	.	65953018	65953548	0	1	530	0
chr15	65953089	65954588	HepG2_Caltech_ENCODE.19999	0	.	65953089	65954588	0	1	1499	0
chr15	65963860	65964481	A549_Myers.44131	0	.	65963860	65964481	0	1	621	0
chr15	65994357	65995990	B_cells_Cheung.110508	0	.	65994357	65995990	0	1	1633	0
chr15	65995131	65995572	A549_Myers.44133	0	.	65995131	65995572	0	1	441	0
chr15	66020947	66021857	B_cells_Cheung.110520	0	.	66020947	66021857	0	1	910	0
chr15	66023208	66023655	A549_Myers.44136	0	.	66023208	66023655	0	1	447	0
chr15	66026845	66028124	HepG2_Caltech_ENCODE.20002	0	.	66026845	66028124	0	1	1279	0
chr15	66027003	66027367	B_cells_Cheung.110523	0	.	66027003	66027367	0	1	364	0
chr15	66063168	66064460	B_cells_Cheung.110543	0	.	66063168	66064460	0	1	1292	0
chr15	66098199	66098932	B_cells_Cheung.110549	0	.	66098199	66098932	0	1	733	0
chr15	66101487	66102284	B_cells_Cheung.110550	0	.	66101487	66102284	0	1	797	0
chr15	66107983	66108557	B_cells_Cheung.110551	0	.	66107983	66108557	0	1	574	0
chr15	66377029	66378349	H1_polyA+.67380	0	.	66377029	66378349	0	1	1320	0
chr15	66377928	66378235	A549_Myers.44169	0	.	66377928	66378235	0	1	307	0
chr15	67137710	67138368	HeLa_polyA+_Chen.19937	0	.	67137710	67138368	0	1	658	0
chr15	67137805	67138651	MCF7_Burge_Thompson.16475	0	.	67137805	67138651	0	1	846	0
chr15	67138735	67139189	A549_Myers.44304	0	.	67138735	67139189	0	1	454	0
chr15	67139215	67140085	melanoma_Garraway_short_term_cultures.37930	0	.	67139215	67140085	0	1	870	0
chr15	67139384	67139788	A549_Myers.44305	0	.	67139384	67139788	0	1	404	0
chr15	67143202	67148406	prostate_carcinoma.54690	0	.	67143202	67148406	0	1	5204	0
chr15	67144677	67145147	A549_Myers.44309	0	.	67144677	67145147	0	1	470	0
chr15	67145352	67154127	REMC_LuminalBreast.56328	0	+	67145352	67154127	0	3	665,218,150	0,5380,8625
chr15	67145612	67146875	melanoma_Garraway_short_term_cultures.37931	0	.	67145612	67146875	0	1	1263	0
chr15	67153430	67154250	H1_polyA+.64052	0	.	67153430	67154250	0	1	820	0
chr15	67170266	67176482	melanoma_Garraway_short_term_cultures.37938	0	+	67170266	67176482	0	2	1370,2388	0,3828
chr15	67174080	67176482	melanoma_Garraway_short_term_cultures.37939	0	.	67174080	67176482	0	1	2402	0
chr15	67174092	67174688	H9_polyA+.24774	0	.	67174092	67174688	0	1	596	0
chr15	67174095	67175435	prostate_carcinoma.54694	0	.	67174095	67175435	0	1	1340	0
chr15	67174149	67175096	MeI_Garraway.9746	0	.	67174149	67175096	0	1	947	0
chr15	67174192	67174508	brain_AmbionMAQC.24050	0	.	67174192	67174508	0	1	316	0
chr15	67174542	67175175	testes_Burge.28583	0	.	67174542	67175175	0	1	633	0
chr15	67193203	67193616	A549_Myers.44320	0	.	67193203	67193616	0	1	413	0
chr15	67355799	67357173	melanoma_Garraway_short_term_cultures.37948	0	.	67355799	67357173	0	1	1374	0
chr15	67371779	67373790	H1_polyA+.64079	0	.	67371779	67373790	0	1	2011	0
chr15	67374060	67376451	H1_polyA+.64080	0	.	67374060	67376451	0	1	2391	0
chr15	67376089	67376588	kidney_Raymond.60294	0	.	67376089	67376588	0	1	499	0
chr15	67537935	67542593	A549_Myers.46216	0	-	67537935	67542593	0	2	272,519	0,4139
chr15	67537948	67543272	B_Cells_Pritchard.1925843	0	-	67537948	67543272	0	3	180,305,1198	0,3455,4126
chr15	67538924	67540928	REMC_LuminalBreast.56365	0	.	67538924	67540928	0	1	2004	0
chr15	67539863	67540904	H1_polyA+.64254	0	.	67539863	67540904	0	1	1041	0
chr15	67540996	67541881	B_cells_Cheung.110743	0	.	67540996	67541881	0	1	885	0
chr15	67541067	67542118	REMC_LuminalBreast.56366	0	.	67541067	67542118	0	1	1051	0
chr15	67541498	67573461	pHIT000025375	0	-	67541498	67573461	0	5	210,123,141,113,148	0,21943,23007,27969,31815
chr15	67541498	67573461	pHIT000088450	0	-	67541498	67573461	0	4	210,141,113,148	0,23007,27969,31815
chr15	67542498	67644920	Rinn_00023233	0	+	67542498	67644920	0	6	20,60,192,222,275,335	0,1726,4323,5066,85247,102087
chr15	67543928	67642713	H1_polyA+.64257	0	+	67543928	67642713	0	3	356,221,205	0,3637,98580
chr15	67546803	67644628	HIT000337728	0	+	67546803	67644628	0	5	210,221,187,215,42	0,762,95705,96179,97783
chr15	67556055	67556772	prostate_carcinoma.54751	0	.	67556055	67556772	0	1	717	0
chr15	67561664	67565011	prostate_carcinoma.54754	0	.	67561664	67565011	0	1	3347	0
chr15	67576623	67578757	prostate_carcinoma.54732	0	.	67576623	67578757	0	1	2134	0
chr15	67588068	67590901	prostate_carcinoma.54734	0	.	67588068	67590901	0	1	2833	0
chr15	67592467	67593362	prostate_carcinoma.54736	0	.	67592467	67593362	0	1	895	0
chr15	67603426	67604255	testes_Burge.28597	0	.	67603426	67604255	0	1	829	0
chr15	67605181	67606634	prostate_carcinoma.54801	0	.	67605181	67606634	0	1	1453	0
chr15	67606890	67607998	prostate_carcinoma.54802	0	.	67606890	67607998	0	1	1108	0
chr15	67608459	67608975	prostate_carcinoma.54803	0	.	67608459	67608975	0	1	516	0
chr15	67617220	67620830	prostate_carcinoma.54807	0	.	67617220	67620830	0	1	3610	0
chr15	67622838	67624976	prostate_carcinoma.54809	0	.	67622838	67624976	0	1	2138	0
chr15	67641112	67650833	NR_026979	0	+	67641112	67650833	0	5	298,187,215,304,701	0,1396,1870,3504,9020
chr15	67641112	67650886	HIT000091685	0	+	67641112	67650886	0	5	298,187,215,304,754	0,1396,1870,3504,9020
chr15	67641112	67650833	ENST00000498938	0	+	67641112	67650833	0	5	298,187,215,304,701	0,1396,1870,3504,9020
chr15	67642203	67642689	ZR751_Thompson.13248	0	.	67642203	67642689	0	1	486	0
chr15	67642998	67644976	Rinn_00023449	0	+	67642998	67644976	0	2	199,391	0,1587
chr15	67643494	67655400	prostate_carcinoma.54813	0	+	67643494	67655400	0	2	47,2633	0,9273
chr15	67652759	67655243	BT474_Burge_Thompson.18208	0	.	67652759	67655243	0	1	2484	0
chr15	67652787	67655315	prostate_normal.31941	0	.	67652787	67655315	0	1	2528	0
chr15	67652949	67654625	ZR751_Thompson.13251	0	.	67652949	67654625	0	1	1676	0
chr15	67653178	67653499	liver_polyA+.76342	0	.	67653178	67653499	0	1	321	0
chr15	67658230	67658533	A549_Myers.44375	0	.	67658230	67658533	0	1	303	0
chr15	67658893	67661593	prostate_carcinoma.54823	0	.	67658893	67661593	0	1	2700	0
chr15	67669226	67670091	prostate_carcinoma.54824	0	.	67669226	67670091	0	1	865	0
chr15	67674914	67675367	A549_Myers.44377	0	.	67674914	67675367	0	1	453	0
chr15	67675036	67675672	prostate_carcinoma.54828	0	.	67675036	67675672	0	1	636	0
chr15	67702709	67705010	prostate_carcinoma.54831	0	.	67702709	67705010	0	1	2301	0
chr15	67705271	67711252	prostate_carcinoma.54832	0	.	67705271	67711252	0	1	5981	0
chr15	67710183	67710656	A549_Myers.44380	0	.	67710183	67710656	0	1	473	0
chr15	67710290	67710740	prostate_normal.31943	0	.	67710290	67710740	0	1	450	0
chr15	67710427	67710858	B_Cells_Pritchard.1902615	0	.	67710427	67710858	0	1	431	0
chr15	67710993	67711569	kidney_Gilad.49024	0	.	67710993	67711569	0	1	576	0
chr15	67710993	67711596	liver_polyA+.76358	0	.	67710993	67711596	0	1	603	0
chr15	67711046	67711641	B_Cells_Pritchard.1902617	0	.	67711046	67711641	0	1	595	0
chr15	67726006	67730057	prostate_carcinoma.54835	0	.	67726006	67730057	0	1	4051	0
chr15	67730397	67732690	prostate_carcinoma.54836	0	.	67730397	67732690	0	1	2293	0
chr15	67732772	67734047	prostate_carcinoma.54838	0	.	67732772	67734047	0	1	1275	0
chr15	67737767	67742274	prostate_carcinoma.54837	0	.	67737767	67742274	0	1	4507	0
chr15	67745001	67745524	A549_Myers.44381	0	.	67745001	67745524	0	1	523	0
chr15	67746473	67747256	B_Cells_Pritchard.1902747	0	.	67746473	67747256	0	1	783	0
chr15	67746551	67747044	A549_Myers.44382	0	.	67746551	67747044	0	1	493	0
chr15	67767449	67783606	prostate_carcinoma.54841	0	.	67767449	67783606	0	1	16157	0
chr15	67767449	67783606	prostate_carcinoma.54840	0	+	67767449	67783606	0	2	140,15405	0,752
chr15	67775959	67777186	prostate_normal.31950	0	.	67775959	67777186	0	1	1227	0
chr15	67777354	67780573	prostate_normal.31951	0	.	67777354	67780573	0	1	3219	0
chr15	67792139	67801126	prostate_carcinoma.54844	0	+	67792139	67801126	0	2	3033,140	0,8847
chr15	67798411	67799975	prostate_carcinoma.54846	0	.	67798411	67799975	0	1	1564	0
chr15	67800168	67801126	prostate_carcinoma.54845	0	.	67800168	67801126	0	1	958	0
chr15	67820982	67825611	prostate_carcinoma.54764	0	.	67820982	67825611	0	1	4629	0
chr15	67831662	67833578	HIT000047547	0	-	67831662	67833578	0	1	1916	0
chr15	67833085	67833541	prostate_carcinoma.54768	0	.	67833085	67833541	0	1	456	0
chr15	67837515	67839560	prostate_carcinoma.54769	0	.	67837515	67839560	0	1	2045	0
chr15	67839845	67841293	prostate_carcinoma.54770	0	.	67839845	67841293	0	1	1448	0
chr15	67859774	67860378	prostate_carcinoma.54772	0	.	67859774	67860378	0	1	604	0
chr15	67868182	67875835	prostate_carcinoma.54776	0	.	67868182	67875835	0	1	7653	0
chr15	67884226	67886359	HIT000002650	0	+	67884226	67886359	0	1	2133	0
chr15	67887962	67889148	prostate_carcinoma.54781	0	.	67887962	67889148	0	1	1186	0
chr15	67887962	67891062	prostate_carcinoma.54780	0	-	67887962	67891062	0	2	1015,1740	0,1360
chr15	67899923	67905723	prostate_carcinoma.54783	0	.	67899923	67905723	0	1	5800	0
chr15	67906824	67908830	prostate_carcinoma.54785	0	.	67906824	67908830	0	1	2006	0
chr15	67909212	67911590	prostate_carcinoma.54788	0	.	67909212	67911590	0	1	2378	0
chr15	67912535	67916380	prostate_carcinoma.54790	0	.	67912535	67916380	0	1	3845	0
chr15	67916503	67918842	prostate_carcinoma.54786	0	.	67916503	67918842	0	1	2339	0
chr15	67919120	67925302	prostate_carcinoma.54791	0	.	67919120	67925302	0	1	6182	0
chr15	67919523	67919974	prostate_normal.31962	0	.	67919523	67919974	0	1	451	0
chr15	67920055	67925302	prostate_carcinoma.54792	0	+	67920055	67925302	0	2	166,4442	0,805
chr15	67935892	67963619	pHIT000088527	0	+	67935892	67963619	0	6	81,71,62,107,150,183	0,454,763,10554,20372,27544
chr15	67935892	67956414	pHIT000025378	0	+	67935892	67956414	0	5	81,71,62,107,150	0,454,763,10554,20372
chr15	67941235	67941677	A549_Myers.44390	0	.	67941235	67941677	0	1	442	0
chr15	67979558	67979959	A549_Myers.44391	0	.	67979558	67979959	0	1	401	0
chr15	68025479	68026321	HIT000469434	0	-	68025479	68026321	0	1	842	0
chr15	68095336	68101179	B_Cells_Pritchard.1903759	0	+	68095336	68101179	0	2	728,975	0,4868
chr15	68107573	68111631	prostate_carcinoma.54793	0	.	68107573	68111631	0	1	4058	0
chr15	68107612	68109245	B_Cells_Pritchard.1903811	0	.	68107612	68109245	0	1	1633	0
chr15	68108572	68109337	B_cells_Cheung.110760	0	.	68108572	68109337	0	1	765	0
chr15	68111804	68113065	prostate_carcinoma.54794	0	.	68111804	68113065	0	1	1261	0
chr15	68111828	68115728	B_Cells_Pritchard.1903821	0	.	68111828	68115728	0	1	3900	0
chr15	68112336	68115601	B_cells_Cheung.110763	0	.	68112336	68115601	0	1	3265	0
chr15	68112477	68115060	CD4_Plagnol_activated.35436	0	.	68112477	68115060	0	1	2583	0
chr15	68112542	68114471	melanoma_Garraway_short_term_cultures.37978	0	.	68112542	68114471	0	1	1929	0
chr15	68113196	68115774	prostate_carcinoma.54795	0	.	68113196	68115774	0	1	2578	0
chr15	68113248	68114735	REMC_MyoepithelialBreast.52770	0	.	68113248	68114735	0	1	1487	0
chr15	68113469	68114363	prostate_normal.31966	0	.	68113469	68114363	0	1	894	0
chr15	68114128	68115806	CD4_Plagnol_resting.34543	0	.	68114128	68115806	0	1	1678	0
chr15	68118911	68122932	REMC_LuminalBreast.56370	0	.	68118911	68122932	0	1	4021	0
chr15	68121117	68122380	prostate_carcinoma.54800	0	.	68121117	68122380	0	1	1263	0
chr15	68122295	68125127	B_Cells_Pritchard.1903841	0	.	68122295	68125127	0	1	2832	0
chr15	68123036	68124677	CD4_Plagnol_resting.34545	0	.	68123036	68124677	0	1	1641	0
chr15	68123055	68124737	B_cells_Cheung.110768	0	.	68123055	68124737	0	1	1682	0
chr15	68123084	68124421	melanoma_Garraway_short_term_cultures.37981	0	.	68123084	68124421	0	1	1337	0
chr15	68123112	68124711	prostate_carcinoma.54848	0	.	68123112	68124711	0	1	1599	0
chr15	68123125	68124845	REMC_BreastStem.28541	0	.	68123125	68124845	0	1	1720	0
chr15	68178419	68178920	REMC_LuminalBreast.56378	0	.	68178419	68178920	0	1	501	0
chr15	68178430	68178995	REMC_MyoepithelialBreast.52782	0	.	68178430	68178995	0	1	565	0
chr15	68178862	68179205	A549_Myers.44420	0	.	68178862	68179205	0	1	343	0
chr15	68179753	68180350	A549_Myers.44421	0	.	68179753	68180350	0	1	597	0
chr15	68193088	68193419	A549_Myers.44424	0	.	68193088	68193419	0	1	331	0
chr15	68246250	68246596	B_Cells_Pritchard.1904029	0	.	68246250	68246596	0	1	346	0
chr15	68260586	68260919	A549_Myers.44431	0	.	68260586	68260919	0	1	333	0
chr15	68267612	68268000	A549_Myers.44432	0	.	68267612	68268000	0	1	388	0
chr15	68271197	68271871	B_cells_Cheung.110776	0	.	68271197	68271871	0	1	674	0
chr15	68271205	68271693	B_Cells_Pritchard.1904119	0	.	68271205	68271693	0	1	488	0
chr15	68275684	68275996	A549_Myers.44435	0	.	68275684	68275996	0	1	312	0
chr15	68277061	68277780	A549_Myers.44436	0	.	68277061	68277780	0	1	719	0
chr15	68281798	68282099	H1_rRNA-depleted_UCSD_REMC.49416	0	.	68281798	68282099	0	1	301	0
chr15	68287738	68288041	B_cells_Cheung.110777	0	.	68287738	68288041	0	1	303	0
chr15	68288687	68289391	B_cells_Cheung.110779	0	.	68288687	68289391	0	1	704	0
chr15	68294158	68294477	A549_Myers.44439	0	.	68294158	68294477	0	1	319	0
chr15	68339902	68340250	A549_Myers.44440	0	.	68339902	68340250	0	1	348	0
chr15	68343068	68343756	B_cells_Cheung.110783	0	.	68343068	68343756	0	1	688	0
chr15	68371785	68372126	A549_Myers.44448	0	.	68371785	68372126	0	1	341	0
chr15	68394970	68396176	B_cells_Cheung.110788	0	.	68394970	68396176	0	1	1206	0
chr15	68436671	68437171	A549_Myers.44454	0	.	68436671	68437171	0	1	500	0
chr15	68436836	68437231	B_Cells_Pritchard.1904717	0	.	68436836	68437231	0	1	395	0
chr15	68454297	68454801	B_Cells_Pritchard.1904773	0	.	68454297	68454801	0	1	504	0
chr15	68454415	68454855	A549_Myers.44456	0	.	68454415	68454855	0	1	440	0
chr15	68482593	68483014	A549_Myers.44458	0	.	68482593	68483014	0	1	421	0
chr15	68524675	68525020	A549_Myers.44462	0	.	68524675	68525020	0	1	345	0
chr15	68551490	68559005	B_cells_Cheung.110799	0	.	68551490	68559005	0	1	7515	0
chr15	68551544	68559005	B_Cells_Pritchard.1905081	0	.	68551544	68559005	0	1	7461	0
chr15	68554192	68554661	A549_Myers.44465	0	.	68554192	68554661	0	1	469	0
chr15	68561597	68562846	B_cells_Cheung.110801	0	.	68561597	68562846	0	1	1249	0
chr15	68561708	68564824	B_Cells_Pritchard.1905091	0	.	68561708	68564824	0	1	3116	0
chr15	68565578	68566055	B_cells_Cheung.110805	0	.	68565578	68566055	0	1	477	0
chr15	68570687	68571140	B_cells_Cheung.110807	0	.	68570687	68571140	0	1	453	0
chr15	68571336	68619929	pHIT000114478	0	+	68571336	68619929	0	3	72,43,344	0,198,48249
chr15	68572000	68572485	A549_Myers.44471	0	.	68572000	68572485	0	1	485	0
chr15	68572946	68573655	B_Cells_Pritchard.1905129	0	.	68572946	68573655	0	1	709	0
chr15	68574064	68574556	A549_Myers.44473	0	.	68574064	68574556	0	1	492	0
chr15	68579542	68580414	B_cells_Cheung.110811	0	.	68579542	68580414	0	1	872	0
chr15	68580472	68581340	B_Cells_Pritchard.1905161	0	.	68580472	68581340	0	1	868	0
chr15	68580473	68580997	B_cells_Cheung.110812	0	.	68580473	68580997	0	1	524	0
chr15	68581515	68582048	B_Cells_Pritchard.1905163	0	.	68581515	68582048	0	1	533	0
chr15	68583066	68583545	B_Cells_Pritchard.1905169	0	.	68583066	68583545	0	1	479	0
chr15	68583119	68583543	A549_Myers.44476	0	.	68583119	68583543	0	1	424	0
chr15	68583268	68583582	B_cells_Cheung.110814	0	.	68583268	68583582	0	1	314	0
chr15	68638212	68638819	A549_Myers.44486	0	+	68638212	68638819	0	2	140,360	0,247
chr15	68639263	68639570	A549_Myers.44488	0	.	68639263	68639570	0	1	307	0
chr15	68650335	68665999	HIT000096238	0	-	68650335	68665999	0	2	2489,732	0,14932
chr15	68650350	68665999	Rinn_00023282	0	-	68650350	68665999	0	2	2474,733	0,14916
chr15	68650351	68665999	ENST00000513467	0	-	68650351	68665999	0	2	2473,732	0,14916
chr15	68651019	68652206	prostate_carcinoma.54856	0	.	68651019	68652206	0	1	1187	0
chr15	68653061	68654773	REMC_LuminalBreast.56382	0	.	68653061	68654773	0	1	1712	0
chr15	68658787	68659609	prostate_carcinoma.54861	0	.	68658787	68659609	0	1	822	0
chr15	68664570	68665546	A549_Myers.44491	0	-	68664570	68665546	0	2	490,132	0,844
chr15	68696806	68697826	REMC_LuminalBreast.56385	0	.	68696806	68697826	0	1	1020	0
chr15	68696820	68697920	REMC_MyoepithelialBreast.52792	0	.	68696820	68697920	0	1	1100	0
chr15	68705574	68707600	REMC_LuminalBreast.56389	0	.	68705574	68707600	0	1	2026	0
chr15	68705618	68706518	REMC_MyoepithelialBreast.52797	0	.	68705618	68706518	0	1	900	0
chr15	68706640	68708908	REMC_MyoepithelialBreast.52798	0	.	68706640	68708908	0	1	2268	0
chr15	68707506	68708853	HepG2_Caltech_ENCODE.20055	0	.	68707506	68708853	0	1	1347	0
chr15	68707909	68709165	REMC_LuminalBreast.56390	0	.	68707909	68709165	0	1	1256	0
chr15	68707949	68724205	REMC_BreastStem.28553	0	-	68707949	68724205	0	2	692,225	0,16031
chr15	68707956	68709013	prostate_carcinoma.54863	0	.	68707956	68709013	0	1	1057	0
chr15	68709199	68710343	prostate_carcinoma.54864	0	.	68709199	68710343	0	1	1144	0
chr15	68709504	68712564	REMC_LuminalBreast.56391	0	.	68709504	68712564	0	1	3060	0
chr15	68711767	68713848	REMC_MyoepithelialBreast.52799	0	.	68711767	68713848	0	1	2081	0
chr15	68716775	68721881	REMC_LuminalBreast.56394	0	.	68716775	68721881	0	1	5106	0
chr15	68722089	68723325	REMC_LuminalBreast.56396	0	.	68722089	68723325	0	1	1236	0
chr15	68873011	68873523	A549_Myers.44508	0	.	68873011	68873523	0	1	512	0
chr15	68905234	68906924	REMC_BreastStem.28789	0	.	68905234	68906924	0	1	1690	0
chr15	68906837	68907747	REMC_MyoepithelialBreast.52815	0	.	68906837	68907747	0	1	910	0
chr15	68907011	68907763	REMC_LuminalBreast.56420	0	.	68907011	68907763	0	1	752	0
chr15	69145669	69148181	REMC_LuminalBreast.56482	0	.	69145669	69148181	0	1	2512	0
chr15	69158873	69159400	REMC_LuminalBreast.56488	0	.	69158873	69159400	0	1	527	0
chr15	69159011	69159378	MCF7_Burge_Thompson.16497	0	.	69159011	69159378	0	1	367	0
chr15	69159033	69159384	ZR751_Thompson.13266	0	.	69159033	69159384	0	1	351	0
chr15	69160710	69172971	Rinn_00023452	0	+	69160710	69172971	0	2	146,503	0,11758
chr15	69160803	69173914	prostate_normal.32001	0	+	69160803	69173914	0	2	53,1445	0,11666
chr15	69161664	69163765	REMC_BreastStem.28859	0	.	69161664	69163765	0	1	2101	0
chr15	69161984	69163709	REMC_LuminalBreast.56490	0	.	69161984	69163709	0	1	1725	0
chr15	69163880	69168791	REMC_LuminalBreast.56491	0	.	69163880	69168791	0	1	4911	0
chr15	69165206	69168034	REMC_MyoepithelialBreast.52828	0	.	69165206	69168034	0	1	2828	0
chr15	69173827	69174880	HIT000092818	0	+	69173827	69174880	0	1	1053	0
chr15	69867809	69868702	H1_polyA+.64352	0	.	69867809	69868702	0	1	893	0
chr15	69868876	69869591	prostate_carcinoma.55077	0	.	69868876	69869591	0	1	715	0
chr15	69869011	69870145	prostate_normal.32103	0	.	69869011	69870145	0	1	1134	0
chr15	69871326	69872002	REMC_LuminalBreast.56798	0	.	69871326	69872002	0	1	676	0
chr15	70224237	70224813	prostate_carcinoma.55091	0	.	70224237	70224813	0	1	576	0
chr15	70234820	70235560	REMC_LuminalBreast.56594	0	.	70234820	70235560	0	1	740	0
chr15	70277283	70278110	B_Cells_Pritchard.1974659	0	+	70277283	70278110	0	1	827	0
chr15	70313217	70314612	B_cells_Cheung.111642	0	.	70313217	70314612	0	1	1395	0
chr15	70318015	70318918	B_cells_Cheung.111645	0	.	70318015	70318918	0	1	903	0
chr15	70400663	70401184	CD4_Plagnol_resting.34555	0	.	70400663	70401184	0	1	521	0
chr15	70404980	70409391	REMC_LuminalBreast.56805	0	.	70404980	70409391	0	1	4411	0
chr15	70408258	70409349	HepG2_Caltech_ENCODE.20104	0	.	70408258	70409349	0	1	1091	0
chr15	70408393	70409361	melanoma_Garraway_short_term_cultures.38065	0	.	70408393	70409361	0	1	968	0
chr15	70408629	70409346	REMC_MyoepithelialBreast.53501	0	.	70408629	70409346	0	1	717	0
chr15	70408836	70409382	HeLa_polyA+_Chen.19999	0	.	70408836	70409382	0	1	546	0
chr15	70415381	70416515	REMC_BreastStem.28653	0	.	70415381	70416515	0	1	1134	0
chr15	70419220	70420226	CD4_Plagnol_activated.35426	0	.	70419220	70420226	0	1	1006	0
chr15	70419250	70419606	MeWo_Garraway.20003	0	.	70419250	70419606	0	1	356	0
chr15	70419313	70419647	kidney_Gilad.49164	0	.	70419313	70419647	0	1	334	0
chr15	70419313	70419912	liver_polyA+.76709	0	.	70419313	70419912	0	1	599	0
chr15	70548514	70551998	REMC_MyoepithelialBreast.53017	0	.	70548514	70551998	0	1	3484	0
chr15	70549777	70551475	HeLa_polyA+_Chen.20022	0	.	70549777	70551475	0	1	1698	0
chr15	70680157	70687971	prostate_carcinoma.55181	0	+	70680157	70687971	0	2	872,116	0,7698
chr15	70682060	70684602	B_cells_Cheung.111105	0	.	70682060	70684602	0	1	2542	0
chr15	70683274	70686266	REMC_BreastStem.28905	0	.	70683274	70686266	0	1	2992	0
chr15	70686322	70688595	REMC_BreastStem.28669	0	.	70686322	70688595	0	1	2273	0
chr15	70687693	70688064	B_cells_Cheung.111107	0	.	70687693	70688064	0	1	371	0
chr15	70688768	70690213	REMC_BreastStem.28670	0	.	70688768	70690213	0	1	1445	0
chr15	70688776	70689448	B_cells_Cheung.111109	0	.	70688776	70689448	0	1	672	0
chr15	70688787	70689448	prostate_carcinoma.55179	0	.	70688787	70689448	0	1	661	0
chr15	70688859	70689909	H1_polyA+.64513	0	.	70688859	70689909	0	1	1050	0
chr15	70688882	70689411	CD4_Plagnol_activated.35466	0	.	70688882	70689411	0	1	529	0
chr15	70689535	70689887	B_cells_Cheung.111110	0	.	70689535	70689887	0	1	352	0
chr15	70693693	70698920	REMC_LuminalBreast.57028	0	.	70693693	70698920	0	1	5227	0
chr15	70695204	70697637	HIT000018634	0	+	70695204	70697637	0	1	2433	0
chr15	70695913	70697558	REMC_BreastStem.28676	0	.	70695913	70697558	0	1	1645	0
chr15	70697697	70698746	B_cells_Cheung.111113	0	.	70697697	70698746	0	1	1049	0
chr15	70701209	70701695	B_cells_Cheung.111115	0	.	70701209	70701695	0	1	486	0
chr15	70702666	70703599	REMC_BreastStem.28680	0	.	70702666	70703599	0	1	933	0
chr15	70707437	70710947	REMC_LuminalBreast.56849	0	.	70707437	70710947	0	1	3510	0
chr15	70707819	70710925	REMC_MyoepithelialBreast.53027	0	.	70707819	70710925	0	1	3106	0
chr15	70707910	70709237	REMC_BreastStem.28683	0	.	70707910	70709237	0	1	1327	0
chr15	70709877	70710975	REMC_BreastStem.28684	0	.	70709877	70710975	0	1	1098	0
chr15	70822077	70823018	CD4_Plagnol_resting.34656	0	.	70822077	70823018	0	2	500,366	0,575
chr15	70822178	70823026	melanoma_Garraway_short_term_cultures.38096	0	.	70822178	70823026	0	1	848	0
chr15	70822422	70823122	H1_polyA+.64530	0	.	70822422	70823122	0	1	700	0
chr15	70822612	70823047	REMC_LuminalBreast.56885	0	.	70822612	70823047	0	1	435	0
chr15	70823812	70827535	H1_polyA+.64532	0	.	70823812	70827535	0	1	3723	0
chr15	70823967	70825648	REMC_LuminalBreast.56887	0	.	70823967	70825648	0	1	1681	0
chr15	70824415	70825636	REMC_MyoepithelialBreast.53036	0	.	70824415	70825636	0	1	1221	0
chr15	70824795	70825626	melanoma_Garraway_short_term_cultures.38097	0	.	70824795	70825626	0	1	831	0
chr15	70824828	70825610	HepG2_Caltech_ENCODE.20127	0	.	70824828	70825610	0	1	782	0
chr15	70825750	70828740	REMC_MyoepithelialBreast.53037	0	.	70825750	70828740	0	1	2990	0
chr15	70827418	70828685	melanoma_Garraway_short_term_cultures.38099	0	.	70827418	70828685	0	1	1267	0
chr15	70827770	70828530	CD4_Plagnol_activated.35472	0	.	70827770	70828530	0	1	760	0
chr15	70828242	70828737	CD4_Plagnol_resting.34657	0	.	70828242	70828737	0	1	495	0
chr15	70865516	70866374	prostate_carcinoma.55256	0	.	70865516	70866374	0	1	858	0
chr15	70866459	70867550	REMC_MyoepithelialBreast.53045	0	.	70866459	70867550	0	1	1091	0
chr15	70866723	70867152	prostate_normal.32143	0	.	70866723	70867152	0	1	429	0
chr15	70874953	70876117	REMC_LuminalBreast.56875	0	.	70874953	70876117	0	1	1164	0
chr15	70875734	70876301	prostate_carcinoma.55261	0	.	70875734	70876301	0	1	567	0
chr15	70876244	70877066	A549_Myers.44695	0	.	70876244	70877066	0	1	822	0
chr15	70876419	70877261	prostate_carcinoma.55262	0	.	70876419	70877261	0	1	842	0
chr15	70904450	70905056	A549_Myers.44696	0	.	70904450	70905056	0	1	606	0
chr15	70950991	70951331	B_Cells_Pritchard.1911045	0	.	70950991	70951331	0	1	340	0
chr15	70960031	70960521	B_Cells_Pritchard.1911071	0	.	70960031	70960521	0	1	490	0
chr15	71386007	71387941	REMC_LuminalBreast.56949	0	.	71386007	71387941	0	1	1934	0
chr15	71392553	71394192	REMC_LuminalBreast.56952	0	.	71392553	71394192	0	1	1639	0
chr15	71396812	71397751	REMC_LuminalBreast.56954	0	.	71396812	71397751	0	1	939	0
chr15	71396931	71397657	MDAMB468_Thompson.13362	0	.	71396931	71397657	0	1	726	0
chr15	71454837	71455192	A549_Myers.44733	0	.	71454837	71455192	0	1	355	0
chr15	71713852	71714758	REMC_LuminalBreast.56956	0	.	71713852	71714758	0	1	906	0
chr15	71714000	71714758	H1_polyA+.64613	0	.	71714000	71714758	0	1	758	0
chr15	71752651	71754293	REMC_MyoepithelialBreast.53131	0	.	71752651	71754293	0	1	1642	0
chr15	71795069	71795809	REMC_LuminalBreast.56960	0	.	71795069	71795809	0	1	740	0
chr15	71797744	71807623	REMC_BreastStem.29064	0	.	71797744	71807623	0	1	9879	0
chr15	71797795	71801504	REMC_MyoepithelialBreast.53135	0	.	71797795	71801504	0	1	3709	0
chr15	71799756	71801602	REMC_LuminalBreast.56963	0	.	71799756	71801602	0	1	1846	0
chr15	71801610	71803148	REMC_MyoepithelialBreast.53136	0	.	71801610	71803148	0	1	1538	0
chr15	71801684	71803017	REMC_LuminalBreast.56964	0	.	71801684	71803017	0	1	1333	0
chr15	71803513	71804392	REMC_LuminalBreast.56965	0	.	71803513	71804392	0	1	879	0
chr15	71807684	71811180	REMC_BreastStem.29065	0	.	71807684	71811180	0	1	3496	0
chr15	71811479	71813499	REMC_BreastStem.29066	0	.	71811479	71813499	0	1	2020	0
chr15	71814529	71818025	brain_AmbionMAQC.24178	0	.	71814529	71818025	0	1	3496	0
chr15	71814833	71817922	HIT000044714	0	-	71814833	71817922	0	1	3089	0
chr15	71815923	71818012	BT474_Burge_Thompson.18281	0	.	71815923	71818012	0	1	2089	0
chr15	71815982	71818015	H1_polyA+.64618	0	.	71815982	71818015	0	1	2033	0
chr15	71816684	71817457	H9_polyA+.24889	0	.	71816684	71817457	0	1	773	0
chr15	71816786	71817417	prostate_normal.32177	0	.	71816786	71817417	0	1	631	0
chr15	71832321	71832646	colon_Burge.20484	0	.	71832321	71832646	0	1	325	0
chr15	71832331	71832632	adipose_Burge.20965	0	.	71832331	71832632	0	1	301	0
chr15	71832895	71833256	NEC_from_H9.41721	0	.	71832895	71833256	0	1	361	0
chr15	71838682	71840445	REMC_BreastStem.29074	0	.	71838682	71840445	0	1	1763	0
chr15	71847392	71849778	ZR751_Thompson.13312	0	+	71847392	71849778	0	2	188,915	0,1471
chr15	71847520	71849867	Rinn_00023460	0	+	71847520	71849867	0	3	60,159,1005	0,625,1342
chr15	71847526	71849280	Rinn_00023976	0	+	71847526	71849280	0	2	54,418	0,1336
chr15	71847695	71849867	Rinn_00023461	0	+	71847695	71849867	0	3	155,159,1005	0,450,1167
chr15	71848289	71849864	Rinn_00023978	0	+	71848289	71849864	0	2	15,1002	0,573
chr15	71848863	71849604	testes_Burge.28772	0	.	71848863	71849604	0	1	741	0
chr15	71848866	71861311	NEC_from_H9.41722	0	+	71848866	71861311	0	2	856,60	0,12385
chr15	71848866	71850005	NEC_from_H9.41723	0	.	71848866	71850005	0	1	1139	0
chr15	71848891	71849605	REMC_MyoepithelialBreast.53143	0	.	71848891	71849605	0	1	714	0
chr15	71848893	71849675	brain_AmbionMAQC.24180	0	.	71848893	71849675	0	1	782	0
chr15	71848900	71849763	BT474_Burge_Thompson.18286	0	.	71848900	71849763	0	1	863	0
chr15	71849084	71849668	MCF7_Burge_Thompson.16569	0	.	71849084	71849668	0	1	584	0
chr15	71854755	71856183	REMC_BreastStem.28720	0	.	71854755	71856183	0	1	1428	0
chr15	71978292	71981635	H1_polyA+.64629	0	.	71978292	71981635	0	1	3343	0
chr15	71979435	71980705	prostate_carcinoma.55225	0	.	71979435	71980705	0	1	1270	0
chr15	71983533	71984516	H1_polyA+.64631	0	.	71983533	71984516	0	1	983	0
chr15	71985546	71986847	H1_polyA+.64633	0	.	71985546	71986847	0	1	1301	0
chr15	71987292	71988008	CD4_Plagnol_resting.34628	0	.	71987292	71988008	0	1	716	0
chr15	71987425	71988078	MCF7_Burge_Thompson.16576	0	.	71987425	71988078	0	1	653	0
chr15	71987428	71988491	prostate_carcinoma.55228	0	.	71987428	71988491	0	1	1063	0
chr15	71987479	71991694	H9_polyA+.24895	0	-	71987479	71991694	0	2	463,116	0,4099
chr15	71987509	71988203	A549_Myers.44756	0	.	71987509	71988203	0	1	694	0
chr15	71987509	71988018	CD4_Plagnol_activated.35503	0	.	71987509	71988018	0	1	509	0
chr15	71987516	71987898	testes_Burge.28780	0	.	71987516	71987898	0	1	382	0
chr15	71987527	71988168	prostate_normal.32181	0	.	71987527	71988168	0	1	641	0
chr15	71987538	71988501	MCF10A_Thompson.12075	0	.	71987538	71988501	0	1	963	0
chr15	71987571	71987967	melanoma_Garraway_short_term_cultures.38133	0	.	71987571	71987967	0	1	396	0
chr15	71990345	71991806	prostate_carcinoma.55230	0	.	71990345	71991806	0	1	1461	0
chr15	71995544	71996455	melanoma_Garraway_short_term_cultures.38134	0	.	71995544	71996455	0	1	911	0
chr15	71995558	71996360	CD4_Plagnol_activated.35504	0	.	71995558	71996360	0	1	802	0
chr15	71995571	71996414	BT474_Burge_Thompson.18289	0	.	71995571	71996414	0	1	843	0
chr15	71995573	71996149	BT20_Thompson.11854	0	.	71995573	71996149	0	1	576	0
chr15	71999098	71999436	testes_Burge.28781	0	.	71999098	71999436	0	1	338	0
chr15	72000514	72001228	BT474_Burge_Thompson.18296	0	.	72000514	72001228	0	1	714	0
chr15	72000518	72001457	H1_polyA+.64636	0	.	72000518	72001457	0	1	939	0
chr15	72000579	72001011	MCF7_Burge_Thompson.16580	0	.	72000579	72001011	0	1	432	0
chr15	72033373	72038362	REMC_BreastStem.28734	0	.	72033373	72038362	0	1	4989	0
chr15	72033373	72040031	REMC_BreastStem.28733	0	+	72033373	72040031	0	2	3250,837	0,5821
chr15	72034605	72036878	REMC_MyoepithelialBreast.53151	0	.	72034605	72036878	0	1	2273	0
chr15	72035133	72035917	REMC_LuminalBreast.56982	0	.	72035133	72035917	0	1	784	0
chr15	72036428	72037842	REMC_LuminalBreast.56983	0	.	72036428	72037842	0	1	1414	0
chr15	72037937	72040174	REMC_LuminalBreast.56984	0	.	72037937	72040174	0	1	2237	0
chr15	72038142	72039656	REMC_MyoepithelialBreast.53152	0	.	72038142	72039656	0	1	1514	0
chr15	72038506	72040031	REMC_BreastStem.28735	0	.	72038506	72040031	0	1	1525	0
chr15	72044017	72044769	REMC_BreastStem.28738	0	.	72044017	72044769	0	1	752	0
chr15	72044196	72044949	A549_Myers.44765	0	.	72044196	72044949	0	1	753	0
chr15	72044867	72045872	REMC_BreastStem.28739	0	.	72044867	72045872	0	1	1005	0
chr15	72052246	72052886	A549_Myers.44766	0	.	72052246	72052886	0	1	640	0
chr15	72060809	72061306	MCF10A_Thompson.12080	0	.	72060809	72061306	0	1	497	0
chr15	72133270	72133762	lymph_node_Burge.26559	0	.	72133270	72133762	0	1	492	0
chr15	72133852	72134386	MDAMB468_Thompson.13381	0	.	72133852	72134386	0	1	534	0
chr15	72136657	72140850	REMC_LuminalBreast.56994	0	.	72136657	72140850	0	1	4193	0
chr15	72136689	72137249	B_Cells_Pritchard.1914237	0	.	72136689	72137249	0	1	560	0
chr15	72144052	72144947	REMC_LuminalBreast.56998	0	.	72144052	72144947	0	1	895	0
chr15	72206007	72207150	brain_AmbionMAQC.24189	0	.	72206007	72207150	0	1	1143	0
chr15	72206028	72206659	B_cells_Cheung.111215	0	.	72206028	72206659	0	1	631	0
chr15	72206077	72206553	B_Cells_Pritchard.1914319	0	.	72206077	72206553	0	1	476	0
chr15	72206094	72207171	H1_polyA+.64651	0	.	72206094	72207171	0	1	1077	0
chr15	72248564	72250207	A549_Myers.44787	0	.	72248564	72250207	0	1	1643	0
chr15	72249115	72250005	REMC_LuminalBreast.57001	0	.	72249115	72250005	0	1	890	0
chr15	72249359	72250216	brain_AmbionMAQC.24197	0	.	72249359	72250216	0	1	857	0
chr15	72292651	72293622	A549_Myers.44797	0	.	72292651	72293622	0	1	971	0
chr15	72293946	72295088	A549_Myers.44798	0	.	72293946	72295088	0	1	1142	0
chr15	72294385	72295075	H9_polyA+.24931	0	.	72294385	72295075	0	1	690	0
chr15	72294478	72294905	MDAMB468_Thompson.13452	0	.	72294478	72294905	0	1	427	0
chr15	72295921	72296328	MDAMB468_Thompson.13454	0	.	72295921	72296328	0	1	407	0
chr15	72453436	72454010	A549_Myers.44810	0	.	72453436	72454010	0	1	574	0
chr15	72458407	72459374	REMC_MyoepithelialBreast.53165	0	.	72458407	72459374	0	1	967	0
chr15	72469990	72471209	BT20_Thompson.11862	0	.	72469990	72471209	0	1	1219	0
chr15	72470551	72471130	CD4_Plagnol_activated.35525	0	.	72470551	72471130	0	1	579	0
chr15	72472247	72473219	BT20_Thompson.11863	0	.	72472247	72473219	0	1	972	0
chr15	72474384	72478825	B_cells_Cheung.113607	0	.	72474384	72478825	0	1	4441	0
chr15	72476384	72477594	REMC_LuminalBreast.57011	0	.	72476384	72477594	0	1	1210	0
chr15	72481123	72481901	CD4_Plagnol_activated.35526	0	.	72481123	72481901	0	1	778	0
chr15	72515803	72516579	B_Cells_Pritchard.1914923	0	.	72515803	72516579	0	1	776	0
chr15	72521227	72521762	B_cells_Cheung.113611	0	.	72521227	72521762	0	1	535	0
chr15	72521323	72522642	B_Cells_Pritchard.1914953	0	+	72521323	72522642	0	1	1319	0
chr15	72521917	72522323	H1_rRNA-depleted_UCSD_REMC.49741	0	.	72521917	72522323	0	1	406	0
chr15	72560722	72561035	H1_rRNA-depleted_UCSD_REMC.49755	0	.	72560722	72561035	0	1	313	0
chr15	72560807	72561238	T47D_Burge_Thompson.15812	0	.	72560807	72561238	0	1	431	0
chr15	72562000	72564298	B_Cells_Pritchard.1915017	0	+	72562000	72564298	0	2	629,168	0,2130
chr15	72562004	72562803	REMC_LuminalBreast.57031	0	.	72562004	72562803	0	1	799	0
chr15	72563315	72567729	H1_polyA+.64689	0	.	72563315	72567729	0	1	4414	0
chr15	72566037	72567749	B_cells_Cheung.111317	0	.	72566037	72567749	0	1	1712	0
chr15	72567064	72567592	melanoma_Garraway_short_term_cultures.38167	0	.	72567064	72567592	0	1	528	0
chr15	72567120	72567695	prostate_carcinoma.55305	0	.	72567120	72567695	0	1	575	0
chr15	72573135	72575188	H1_polyA+.64692	0	.	72573135	72575188	0	1	2053	0
chr15	72573547	72574121	H9_polyA+.24946	0	.	72573547	72574121	0	1	574	0
chr15	72573682	72582003	B_Cells_Pritchard.1915045	0	+	72573682	72582003	0	6	174,203,865,48,49,153	0,4220,6079,7552,7711,8168
chr15	72573682	72582486	B_Cells_Pritchard.1915047	0	-	72573682	72582486	0	3	207,747,1304	0,5919,7500
chr15	72575296	72577405	B_cells_Cheung.111324	0	.	72575296	72577405	0	1	2109	0
chr15	72575346	72577425	H1_polyA+.64693	0	.	72575346	72577425	0	1	2079	0
chr15	72577662	72578116	B_cells_Cheung.111326	0	.	72577662	72578116	0	1	454	0
chr15	72578552	72582577	H1_polyA+.64694	0	.	72578552	72582577	0	1	4025	0
chr15	72579575	72580644	B_cells_Cheung.111329	0	.	72579575	72580644	0	1	1069	0
chr15	72581181	72581640	H9_polyA+.24948	0	.	72581181	72581640	0	1	459	0
chr15	72583024	72602143	B_Cells_Pritchard.1915089	0	-	72583024	72602143	0	9	245,894,152,232,363,258,273,498,71	0,2260,4801,4990,8595,9256,9595,10099,19048
chr15	72583043	72586332	H1_polyA+.64697	0	.	72583043	72586332	0	1	3289	0
chr15	72584910	72586335	B_cells_Cheung.111334	0	.	72584910	72586335	0	1	1425	0
chr15	72584932	72591978	prostate_carcinoma.55316	0	-	72584932	72591978	0	2	1007,135	0,6911
chr15	72585275	72586048	prostate_carcinoma.55317	0	.	72585275	72586048	0	1	773	0
chr15	72587443	72589711	H1_polyA+.64695	0	.	72587443	72589711	0	1	2268	0
chr15	72587609	72588176	CD4_Plagnol_resting.34681	0	.	72587609	72588176	0	1	567	0
chr15	72589367	72589707	B_cells_Cheung.111340	0	.	72589367	72589707	0	1	340	0
chr15	72590619	72591978	prostate_carcinoma.55318	0	.	72590619	72591978	0	1	1359	0
chr15	72591062	72591959	MIP101.38330	0	.	72591062	72591959	0	1	897	0
chr15	72591384	72591978	melanoma_Garraway_short_term_cultures.38175	0	.	72591384	72591978	0	1	594	0
chr15	72591537	72591968	prostate_normal.32229	0	.	72591537	72591968	0	1	431	0
chr15	72591618	72591961	T47D_Burge_Thompson.15813	0	.	72591618	72591961	0	1	343	0
chr15	72591639	72591988	H9_polyA+.24951	0	.	72591639	72591988	0	1	349	0
chr15	72591696	72592001	HeLa_polyA+_Chen.20073	0	.	72591696	72592001	0	1	305	0
chr15	72593868	72595201	B_cells_Cheung.111343	0	.	72593868	72595201	0	1	1333	0
chr15	72594010	72595092	H1_polyA+.64700	0	.	72594010	72595092	0	1	1082	0
chr15	72594265	72594961	MIP101.38331	0	.	72594265	72594961	0	1	696	0
chr15	72599794	72602052	H1_polyA+.64704	0	.	72599794	72602052	0	1	2258	0
chr15	72600460	72613810	B_Cells_Pritchard.1915169	0	+	72600460	72613810	0	5	711,650,3240,65,222	0,7540,8953,12331,13128
chr15	72600848	72612942	B_Cells_Pritchard.1915171	0	-	72600848	72612942	0	7	277,49,327,434,825,81,768	0,7354,8569,9208,9735,10815,11326
chr15	72609323	72612277	H1_polyA+.64710	0	.	72609323	72612277	0	1	2954	0
chr15	72612269	72612938	B_cells_Cheung.111360	0	.	72612269	72612938	0	1	669	0
chr15	72612392	72612950	H1_polyA+.64711	0	.	72612392	72612950	0	1	558	0
chr15	72613928	72616014	B_Cells_Pritchard.1915201	0	.	72613928	72616014	0	1	2086	0
chr15	72613931	72616025	B_cells_Cheung.111363	0	.	72613931	72616025	0	1	2094	0
chr15	72613937	72616001	H1_polyA+.64713	0	.	72613937	72616001	0	1	2064	0
chr15	72614527	72615989	MIP101.38338	0	.	72614527	72615989	0	1	1462	0
chr15	72614775	72615420	K562.24831	0	.	72614775	72615420	0	1	645	0
chr15	72678601	72679166	CD4_Plagnol_resting.34727	0	.	72678601	72679166	0	1	565	0
chr15	72681025	72681569	K562.24846	0	.	72681025	72681569	0	1	544	0
chr15	72681077	72685132	BT474_Burge_Thompson.18327	0	.	72681077	72685132	0	1	4055	0
chr15	72681122	72683900	BT20_Thompson.11878	0	.	72681122	72683900	0	1	2778	0
chr15	72681128	72683445	REMC_LuminalBreast.57125	0	.	72681128	72683445	0	1	2317	0
chr15	72681712	72682629	K562.24847	0	.	72681712	72682629	0	1	917	0
chr15	72681784	72683519	brain_AmbionMAQC.24228	0	.	72681784	72683519	0	1	1735	0
chr15	72681878	72683056	REMC_MyoepithelialBreast.53198	0	.	72681878	72683056	0	1	1178	0
chr15	72681881	72683095	ZR751_Thompson.13334	0	.	72681881	72683095	0	1	1214	0
chr15	72682601	72683048	HeLa_polyA+_Chen.20087	0	.	72682601	72683048	0	1	447	0
chr15	72682604	72683378	A549_Myers.44824	0	.	72682604	72683378	0	2	353,368	0,406
chr15	72682739	72683446	K562.24848	0	.	72682739	72683446	0	1	707	0
chr15	72685194	72685783	MIP101.38363	0	.	72685194	72685783	0	1	589	0
chr15	72955547	72956413	B_Cells_Pritchard.1915703	0	.	72955547	72956413	0	1	866	0
chr15	72987612	72995221	REMC_LuminalBreast.57072	0	.	72987612	72995221	0	1	7609	0
chr15	72987647	72988805	H1_polyA+.64762	0	.	72987647	72988805	0	1	1158	0
chr15	72987657	72988006	B_Cells_Pritchard.1916841	0	+	72987657	72988006	0	1	349	0
chr15	72990850	72991998	REMC_BreastStem.28801	0	.	72990850	72991998	0	1	1148	0
chr15	72990857	72991680	H1_polyA+.64764	0	.	72990857	72991680	0	1	823	0
chr15	72990866	72991805	B_cells_Cheung.111473	0	.	72990866	72991805	0	1	939	0
chr15	72990880	72991633	melanoma_Garraway_short_term_cultures.38246	0	.	72990880	72991633	0	1	753	0
chr15	72990899	72991614	HeLa_polyA+_Chen.20100	0	.	72990899	72991614	0	1	715	0
chr15	72990911	72991812	REMC_MyoepithelialBreast.53240	0	.	72990911	72991812	0	1	901	0
chr15	72996488	72997948	REMC_MyoepithelialBreast.53243	0	.	72996488	72997948	0	1	1460	0
chr15	73022056	73023160	REMC_BreastStem.28811	0	.	73022056	73023160	0	1	1104	0
chr15	73025821	73027105	REMC_BreastStem.28813	0	.	73025821	73027105	0	1	1284	0
chr15	73025874	73026641	REMC_LuminalBreast.57082	0	.	73025874	73026641	0	1	767	0
chr15	73026855	73030425	B_Cells_Pritchard.1915833	0	+	73026855	73030425	0	2	126,991	0,2579
chr15	73029053	73030845	H1_polyA+.64772	0	.	73029053	73030845	0	1	1792	0
chr15	73029576	73030904	REMC_BreastStem.28816	0	.	73029576	73030904	0	1	1328	0
chr15	73029705	73030419	REMC_LuminalBreast.57083	0	.	73029705	73030419	0	1	714	0
chr15	73029740	73030802	HeLa_polyA+_Chen.20103	0	.	73029740	73030802	0	1	1062	0
chr15	73131206	73131640	MCF7_Burge_Thompson.16677	0	.	73131206	73131640	0	1	434	0
chr15	73134301	73136165	REMC_LuminalBreast.57092	0	.	73134301	73136165	0	1	1864	0
chr15	73134864	73136196	B_cells_Cheung.111514	0	.	73134864	73136196	0	1	1332	0
chr15	73135265	73136170	melanoma_Garraway_short_term_cultures.38274	0	.	73135265	73136170	0	1	905	0
chr15	73135270	73136081	prostate_carcinoma.55452	0	.	73135270	73136081	0	1	811	0
chr15	73135296	73135855	A549_Myers.44898	0	.	73135296	73135855	0	1	559	0
chr15	73135316	73135826	MCF7_Burge_Thompson.16679	0	.	73135316	73135826	0	1	510	0
chr15	73135325	73135904	CD4_Plagnol_activated.35619	0	.	73135325	73135904	0	1	579	0
chr15	73135327	73136188	REMC_MyoepithelialBreast.53257	0	.	73135327	73136188	0	1	861	0
chr15	73135395	73135908	BT474_Burge_Thompson.18343	0	.	73135395	73135908	0	1	513	0
chr15	73135420	73136153	prostate_normal.32291	0	.	73135420	73136153	0	1	733	0
chr15	73135439	73136118	HeLa_polyA+_Chen.20113	0	.	73135439	73136118	0	1	679	0
chr15	73135483	73135895	CD4_Plagnol_resting.34758	0	.	73135483	73135895	0	1	412	0
chr15	73135560	73136886	liver_polyA+.76966	0	-	73135560	73136886	0	2	426,92	0,1234
chr15	73135593	73136008	breast_Burge.21650	0	.	73135593	73136008	0	1	415	0
chr15	73140045	73152366	REMC_LuminalBreast.57096	0	.	73140045	73152366	0	1	12321	0
chr15	73141571	73144384	H1_polyA+.64785	0	.	73141571	73144384	0	1	2813	0
chr15	73142419	73144942	REMC_MyoepithelialBreast.53261	0	.	73142419	73144942	0	1	2523	0
chr15	73144254	73145598	B_cells_Cheung.111523	0	.	73144254	73145598	0	1	1344	0
chr15	73145045	73147396	H1_polyA+.64787	0	.	73145045	73147396	0	1	2351	0
chr15	73146356	73147442	REMC_MyoepithelialBreast.53264	0	.	73146356	73147442	0	1	1086	0
chr15	73146606	73147438	B_cells_Cheung.111525	0	.	73146606	73147438	0	1	832	0
chr15	73146625	73147363	B_Cells_Pritchard.1916025	0	.	73146625	73147363	0	1	738	0
chr15	73147513	73153231	B_cells_Cheung.111526	0	.	73147513	73153231	0	1	5718	0
chr15	73147535	73161000	B_Cells_Pritchard.1916029	0	-	73147535	73161000	0	6	4999,283,127,2053,1477,187	0,5011,6329,7273,11799,13278
chr15	73147599	73150259	REMC_MyoepithelialBreast.53265	0	.	73147599	73150259	0	1	2660	0
chr15	73147618	73148433	HeLa_polyA+_Chen.20124	0	.	73147618	73148433	0	1	815	0
chr15	73147626	73151450	MIP101.38456	0	.	73147626	73151450	0	1	3824	0
chr15	73147629	73152940	H1_polyA+.64788	0	.	73147629	73152940	0	1	5311	0
chr15	73153043	73153638	REMC_LuminalBreast.57097	0	.	73153043	73153638	0	1	595	0
chr15	73153336	73153672	B_cells_Cheung.111527	0	.	73153336	73153672	0	1	336	0
chr15	73154128	73156571	B_cells_Cheung.111529	0	.	73154128	73156571	0	1	2443	0
chr15	73154266	73155659	REMC_MyoepithelialBreast.53267	0	.	73154266	73155659	0	1	1393	0
chr15	73154328	73158212	REMC_LuminalBreast.57098	0	.	73154328	73158212	0	1	3884	0
chr15	73154343	73156144	H1_polyA+.64789	0	.	73154343	73156144	0	1	1801	0
chr15	73154924	73172953	MIP101.38465	0	-	73154924	73172953	0	2	1999,55	0,17974
chr15	73155056	73155598	liver_polyA+.76970	0	.	73155056	73155598	0	1	542	0
chr15	73157203	73158137	B_cells_Cheung.111531	0	.	73157203	73158137	0	1	934	0
chr15	73157211	73158098	B_Cells_Pritchard.1916037	0	+	73157211	73158098	0	1	887	0
chr15	73158428	73163225	REMC_LuminalBreast.57099	0	.	73158428	73163225	0	1	4797	0
chr15	73158921	73161063	B_cells_Cheung.111533	0	.	73158921	73161063	0	1	2142	0
chr15	73159020	73162739	REMC_MyoepithelialBreast.53271	0	.	73159020	73162739	0	1	3719	0
chr15	73164671	73165488	REMC_LuminalBreast.57100	0	.	73164671	73165488	0	1	817	0
chr15	73166275	73167075	H1_polyA+.64795	0	.	73166275	73167075	0	1	800	0
chr15	73166279	73166800	REMC_MyoepithelialBreast.53272	0	.	73166279	73166800	0	1	521	0
chr15	73166295	73167149	B_cells_Cheung.111538	0	.	73166295	73167149	0	1	854	0
chr15	73166298	73185711	B_Cells_Pritchard.1916081	0	-	73166298	73185711	0	6	184,46,54,150,125,145	0,17894,18111,18216,18604,19268
chr15	73166298	73186051	B_Cells_Pritchard.1916079	0	+	73166298	73186051	0	3	189,1081,560	0,17841,19193
chr15	73169433	73170091	prostate_carcinoma.55457	0	.	73169433	73170091	0	1	658	0
chr15	73172455	73173112	B_cells_Cheung.111545	0	.	73172455	73173112	0	1	657	0
chr15	73176120	73176784	REMC_MyoepithelialBreast.53276	0	.	73176120	73176784	0	1	664	0
chr15	73176126	73178753	REMC_LuminalBreast.57106	0	.	73176126	73178753	0	1	2627	0
chr15	73176147	73183876	B_Cells_Pritchard.1916141	0	+	73176147	73183876	0	3	628,1102,147	0,876,7582
chr15	73176835	73178549	REMC_MyoepithelialBreast.53277	0	.	73176835	73178549	0	1	1714	0
chr15	73176906	73178425	prostate_carcinoma.55459	0	.	73176906	73178425	0	1	1519	0
chr15	73176921	73178366	H1_polyA+.64800	0	.	73176921	73178366	0	1	1445	0
chr15	73176934	73178500	B_cells_Cheung.111550	0	.	73176934	73178500	0	1	1566	0
chr15	73185481	73186155	B_cells_Cheung.111557	0	.	73185481	73186155	0	1	674	0
chr15	73185519	73186151	REMC_MyoepithelialBreast.53281	0	.	73185519	73186151	0	1	632	0
chr15	73185549	73186098	REMC_LuminalBreast.57110	0	.	73185549	73186098	0	1	549	0
chr15	73186898	73189810	B_Cells_Pritchard.1916211	0	+	73186898	73189810	0	2	180,2243	0,669
chr15	73187179	73191180	REMC_LuminalBreast.57112	0	.	73187179	73191180	0	1	4001	0
chr15	73187558	73188606	B_cells_Cheung.111560	0	.	73187558	73188606	0	1	1048	0
chr15	73187597	73190824	prostate_carcinoma.55461	0	.	73187597	73190824	0	1	3227	0
chr15	73188533	73189786	MIP101.38475	0	.	73188533	73189786	0	1	1253	0
chr15	73188673	73189387	B_cells_Cheung.111561	0	.	73188673	73189387	0	1	714	0
chr15	73189015	73190941	H1_polyA+.64805	0	.	73189015	73190941	0	1	1926	0
chr15	73191702	73192647	H1_polyA+.64806	0	.	73191702	73192647	0	1	945	0
chr15	73196268	73198244	REMC_LuminalBreast.57115	0	.	73196268	73198244	0	1	1976	0
chr15	73196848	73198203	REMC_MyoepithelialBreast.53286	0	.	73196848	73198203	0	1	1355	0
chr15	73203011	73203545	B_Cells_Pritchard.1916273	0	.	73203011	73203545	0	1	534	0
chr15	73205324	73206721	REMC_LuminalBreast.57117	0	.	73205324	73206721	0	1	1397	0
chr15	73205329	73207464	B_Cells_Pritchard.1916281	0	.	73205329	73207464	0	1	2135	0
chr15	73205353	73207521	B_cells_Cheung.111571	0	.	73205353	73207521	0	1	2168	0
chr15	73206050	73207042	prostate_carcinoma.55464	0	.	73206050	73207042	0	1	992	0
chr15	73206180	73206655	MIP101.38479	0	.	73206180	73206655	0	1	475	0
chr15	73208589	73209643	B_cells_Cheung.111573	0	.	73208589	73209643	0	1	1054	0
chr15	73208615	73209760	H1_polyA+.64809	0	.	73208615	73209760	0	1	1145	0
chr15	73208675	73209753	B_Cells_Pritchard.1916291	0	+	73208675	73209753	0	1	1078	0
chr15	73209104	73209755	MIP101.38480	0	.	73209104	73209755	0	1	651	0
chr15	73209995	73214618	B_Cells_Pritchard.1916297	0	-	73209995	73214618	0	4	155,329,528,438	0,168,3612,4185
chr15	73213208	73214249	REMC_LuminalBreast.57120	0	.	73213208	73214249	0	1	1041	0
chr15	73213416	73214554	REMC_MyoepithelialBreast.53289	0	.	73213416	73214554	0	1	1138	0
chr15	73213529	73214624	B_cells_Cheung.111578	0	.	73213529	73214624	0	1	1095	0
chr15	73215500	73216258	REMC_LuminalBreast.57121	0	.	73215500	73216258	0	1	758	0
chr15	73215727	73216196	prostate_normal.32295	0	.	73215727	73216196	0	1	469	0
chr15	73216391	73220704	REMC_LuminalBreast.57122	0	.	73216391	73220704	0	1	4313	0
chr15	73216442	73218693	MIP101.38483	0	.	73216442	73218693	0	1	2251	0
chr15	73216443	73219144	prostate_carcinoma.55463	0	.	73216443	73219144	0	1	2701	0
chr15	73217257	73217768	prostate_normal.32297	0	.	73217257	73217768	0	1	511	0
chr15	73217272	73219164	B_cells_Cheung.111581	0	.	73217272	73219164	0	1	1892	0
chr15	73217335	73219207	B_Cells_Pritchard.1916353	0	+	73217335	73219207	0	1	1872	0
chr15	73217335	73237940	B_Cells_Pritchard.1916351	0	-	73217335	73237940	0	6	387,759,212,439,93,622	0,471,1230,1463,5740,19983
chr15	73217581	73219417	REMC_MyoepithelialBreast.53292	0	.	73217581	73219417	0	1	1836	0
chr15	73217837	73219136	prostate_normal.32298	0	.	73217837	73219136	0	1	1299	0
chr15	73217869	73219270	H1_polyA+.64813	0	.	73217869	73219270	0	1	1401	0
chr15	73221601	73222724	B_cells_Cheung.111583	0	.	73221601	73222724	0	1	1123	0
chr15	73223250	73225472	B_cells_Cheung.111585	0	.	73223250	73225472	0	1	2222	0
chr15	73224870	73225540	B_Cells_Pritchard.1916373	0	-	73224870	73225540	0	2	256,414	0,256
chr15	73224941	73225435	A549_Myers.44907	0	.	73224941	73225435	0	1	494	0
chr15	73230705	73231166	B_cells_Cheung.111588	0	.	73230705	73231166	0	1	461	0
chr15	73233222	73235383	B_Cells_Pritchard.1916471	0	-	73233222	73235383	0	2	896,1000	0,1161
chr15	73233429	73233859	B_cells_Cheung.111590	0	.	73233429	73233859	0	1	430	0
chr15	73234429	73235430	B_cells_Cheung.111592	0	.	73234429	73235430	0	1	1001	0
chr15	73243727	73249545	B_Cells_Pritchard.1916493	0	-	73243727	73249545	0	4	50,306,618,223	0,2104,2454,5595
chr15	73244934	73256530	B_Cells_Pritchard.1916525	0	+	73244934	73256530	0	2	38,754	0,10842
chr15	73251683	73252017	A549_Myers.44909	0	.	73251683	73252017	0	1	334	0
chr15	73251910	73252279	B_cells_Cheung.111604	0	.	73251910	73252279	0	1	369	0
chr15	73252329	73262754	B_Cells_Pritchard.1916597	0	-	73252329	73262754	0	2	78,1788	0,8637
chr15	73252372	73252740	B_cells_Cheung.111605	0	.	73252372	73252740	0	1	368	0
chr15	73253465	73253886	A549_Myers.44910	0	.	73253465	73253886	0	1	421	0
chr15	73253487	73254161	B_cells_Cheung.111607	0	.	73253487	73254161	0	1	674	0
chr15	73255800	73259513	B_cells_Cheung.111610	0	.	73255800	73259513	0	1	3713	0
chr15	73256095	73256447	A549_Myers.44912	0	.	73256095	73256447	0	1	352	0
chr15	73256712	73257832	B_Cells_Pritchard.1916643	0	-	73256712	73257832	0	2	476,562	0,558
chr15	73257941	73259123	B_Cells_Pritchard.1916645	0	+	73257941	73259123	0	1	1182	0
chr15	73259646	73260608	B_Cells_Pritchard.1916655	0	+	73259646	73260608	0	1	962	0
chr15	73259689	73260652	B_cells_Cheung.111611	0	.	73259689	73260652	0	1	963	0
chr15	73259834	73260287	A549_Myers.44915	0	.	73259834	73260287	0	1	453	0
chr15	73261596	73262749	B_cells_Cheung.111613	0	.	73261596	73262749	0	1	1153	0
chr15	73263208	73264500	REMC_LuminalBreast.57124	0	.	73263208	73264500	0	1	1292	0
chr15	73264646	73265250	B_cells_Cheung.111616	0	.	73264646	73265250	0	1	604	0
chr15	73265376	73265913	B_cells_Cheung.111617	0	.	73265376	73265913	0	1	537	0
chr15	73270215	73271964	B_cells_Cheung.111619	0	.	73270215	73271964	0	1	1749	0
chr15	73292941	73293706	A549_Myers.44927	0	.	73292941	73293706	0	1	765	0
chr15	73293727	73294328	HeLa_polyA+_Chen.20131	0	.	73293727	73294328	0	1	601	0
chr15	73294048	73295505	melanoma_Garraway_short_term_cultures.38285	0	.	73294048	73295505	0	1	1457	0
chr15	73294609	73295072	A549_Myers.44929	0	.	73294609	73295072	0	1	463	0
chr15	73295171	73295568	B_cells_Cheung.111625	0	.	73295171	73295568	0	1	397	0
chr15	73299008	73300962	REMC_MyoepithelialBreast.53317	0	.	73299008	73300962	0	1	1954	0
chr15	73301076	73302513	REMC_MyoepithelialBreast.53318	0	.	73301076	73302513	0	1	1437	0
chr15	73302618	73303046	REMC_LuminalBreast.57195	0	.	73302618	73303046	0	1	428	0
chr15	73302841	73303852	Rinn_00023741	0	-	73302841	73303852	0	2	215,274	0,737
chr15	73303082	73304167	REMC_MyoepithelialBreast.53319	0	.	73303082	73304167	0	1	1085	0
chr15	73303152	73305085	REMC_LuminalBreast.57196	0	.	73303152	73305085	0	1	1933	0
chr15	73303254	73304104	B_Cells_Pritchard.1916723	0	.	73303254	73304104	0	1	850	0
chr15	73313688	73315249	REMC_MyoepithelialBreast.53324	0	.	73313688	73315249	0	1	1561	0
chr15	73314457	73314923	B_Cells_Pritchard.1916773	0	.	73314457	73314923	0	1	466	0
chr15	73316012	73317021	REMC_MyoepithelialBreast.53325	0	.	73316012	73317021	0	1	1009	0
chr15	73316108	73316950	B_Cells_Pritchard.1916777	0	.	73316108	73316950	0	1	842	0
chr15	73317365	73318052	B_Cells_Pritchard.1916781	0	.	73317365	73318052	0	1	687	0
chr15	73324229	73325494	REMC_LuminalBreast.57164	0	.	73324229	73325494	0	1	1265	0
chr15	73326701	73328235	REMC_LuminalBreast.57165	0	.	73326701	73328235	0	1	1534	0
chr15	73410017	73410763	REMC_LuminalBreast.57168	0	.	73410017	73410763	0	1	746	0
chr15	73423860	73424644	REMC_BreastStem.28873	0	.	73423860	73424644	0	1	784	0
chr15	73423883	73424782	B_cells_Cheung.112680	0	.	73423883	73424782	0	1	899	0
chr15	73542132	73543578	prostate_carcinoma.56107	0	.	73542132	73543578	0	1	1446	0
chr15	73542690	73543685	MeI_Garraway.9846	0	.	73542690	73543685	0	1	995	0
chr15	73661209	73661591	B_cells_Cheung.111674	0	.	73661209	73661591	0	1	382	0
chr15	73667250	73668861	H1_polyA+.64866	0	.	73667250	73668861	0	1	1611	0
chr15	73667825	73668889	B_cells_Cheung.111682	0	.	73667825	73668889	0	1	1064	0
chr15	73667897	73668807	CD4_Plagnol_activated.35634	0	.	73667897	73668807	0	1	910	0
chr15	73668433	73669395	REMC_BreastStem.28880	0	.	73668433	73669395	0	1	962	0
chr15	73669122	73669428	HeLa_polyA+_Chen.20163	0	.	73669122	73669428	0	1	306	0
chr15	73670542	73672357	H1_polyA+.64868	0	.	73670542	73672357	0	1	1815	0
chr15	73674788	73675909	prostate_normal.32317	0	.	73674788	73675909	0	1	1121	0
chr15	73674841	73675920	K562.24924	0	.	73674841	73675920	0	1	1079	0
chr15	73716017	73717452	REMC_BreastStem.28887	0	.	73716017	73717452	0	1	1435	0
chr15	73739399	73741732	MeWo_Garraway.20087	0	.	73739399	73741732	0	1	2333	0
chr15	73739584	73740744	lymph_node_Burge.26724	0	.	73739584	73740744	0	1	1160	0
chr15	73739602	73740475	HME_Burge.22001	0	.	73739602	73740475	0	1	873	0
chr15	73739799	73740581	NEC_from_H9.41944	0	.	73739799	73740581	0	1	782	0
chr15	73740105	73740470	adipose_Burge.21091	0	.	73740105	73740470	0	1	365	0
chr15	73740111	73740510	breast_Burge.21687	0	.	73740111	73740510	0	1	399	0
chr15	73741836	73744531	melanoma_Garraway_short_term_cultures.38333	0	.	73741836	73744531	0	1	2695	0
chr15	73741849	73744420	HeLa_polyA+_Chen.20173	0	.	73741849	73744420	0	1	2571	0
chr15	73742259	73742963	H9_polyA+.25034	0	.	73742259	73742963	0	1	704	0
chr15	73742317	73744483	prostate_normal.32336	0	.	73742317	73744483	0	1	2166	0
chr15	73742343	73742652	A549_Myers.44973	0	.	73742343	73742652	0	1	309	0
chr15	73742959	73743445	liver_polyA+.77082	0	.	73742959	73743445	0	1	486	0
chr15	73743007	73743783	T47D_Burge_Thompson.15853	0	.	73743007	73743783	0	1	776	0
chr15	73743636	73744507	MCF7_Burge_Thompson.16723	0	.	73743636	73744507	0	1	871	0
chr15	73743851	73744334	T47D_Burge_Thompson.15854	0	.	73743851	73744334	0	1	483	0
chr15	73743855	73744438	REMC_BreastStem.28944	0	.	73743855	73744438	0	1	583	0
chr15	73744979	73745415	MIP101.39275	0	.	73744979	73745415	0	1	436	0
chr15	73744987	73747578	MCF7_Burge_Thompson.16724	0	.	73744987	73747578	0	1	2591	0
chr15	73745002	73745424	skeletal_muscle_Raymond.57865	0	.	73745002	73745424	0	1	422	0
chr15	73745746	73746855	REMC_BreastStem.28946	0	.	73745746	73746855	0	1	1109	0
chr15	73746810	73747605	melanoma_Garraway_short_term_cultures.38336	0	.	73746810	73747605	0	1	795	0
chr15	73746871	73747575	HeLa_polyA+_Chen.20178	0	.	73746871	73747575	0	1	704	0
chr15	73747010	73747525	A549_Myers.44980	0	.	73747010	73747525	0	1	515	0
chr15	73747109	73747525	liver_polyA+.77085	0	.	73747109	73747525	0	1	416	0
chr15	73748030	73749813	HeLa_polyA+_Chen.20179	0	.	73748030	73749813	0	1	1783	0
chr15	73748756	73749978	MIP101.39276	0	.	73748756	73749978	0	1	1222	0
chr15	73749147	73749745	A549_Myers.44983	0	.	73749147	73749745	0	1	598	0
chr15	73749259	73749656	H9_polyA+.25037	0	.	73749259	73749656	0	1	397	0
chr15	73749283	73749688	liver_polyA+.77088	0	.	73749283	73749688	0	1	405	0
chr15	73749374	73750245	B_Cells_Pritchard.1917359	0	.	73749374	73750245	0	1	871	0
chr15	73749809	73751494	MCF7_Burge_Thompson.16726	0	.	73749809	73751494	0	1	1685	0
chr15	73749991	73750523	A549_Myers.44984	0	.	73749991	73750523	0	1	532	0
chr15	73751479	73752581	MIP101.39278	0	.	73751479	73752581	0	1	1102	0
chr15	73751573	73752260	HeLa_polyA-_Chen.10856	0	.	73751573	73752260	0	1	687	0
chr15	73800494	73801035	BT474_Burge_Thompson.18358	0	.	73800494	73801035	0	1	541	0
chr15	73800498	73802057	melanoma_Garraway_short_term_cultures.38355	0	.	73800498	73802057	0	1	1559	0
chr15	73800515	73801050	A549_Myers.44993	0	.	73800515	73801050	0	1	535	0
chr15	73801105	73801944	BT474_Burge_Thompson.18359	0	.	73801105	73801944	0	1	839	0
chr15	73801421	73801819	A549_Myers.44994	0	.	73801421	73801819	0	1	398	0
chr15	73809899	73811940	REMC_BreastStem.28908	0	.	73809899	73811940	0	1	2041	0
chr15	73810272	73810801	B_Cells_Pritchard.1917503	0	.	73810272	73810801	0	1	529	0
chr15	73810458	73811459	brain_AmbionMAQC.24290	0	.	73810458	73811459	0	1	1001	0
chr15	73811027	73811916	H1_polyA+.64899	0	.	73811027	73811916	0	1	889	0
chr15	74412728	74413100	A549_Myers.45094	0	.	74412728	74413100	0	1	372	0
chr15	74423299	74426091	pHIT000025495	0	+	74423299	74426091	0	2	88,626	0,2166
chr15	74424653	74426260	HepG2_Caltech_ENCODE.20289	0	.	74424653	74426260	0	1	1607	0
chr15	74425113	74426009	A549_Myers.45098	0	.	74425113	74426009	0	1	896	0
chr15	74425212	74426265	B_Cells_Pritchard.1919027	0	.	74425212	74426265	0	1	1053	0
chr15	74425346	74426183	MCF7_Burge_Thompson.16736	0	.	74425346	74426183	0	1	837	0
chr15	74425363	74426266	B_cells_Cheung.111910	0	.	74425363	74426266	0	1	903	0
chr15	74425515	74426091	pHIT000088627	0	+	74425515	74426091	0	1	576	0
chr15	74425617	74426195	MDAMB468_Thompson.13466	0	.	74425617	74426195	0	1	578	0
chr15	75058584	75058939	K562.24936	0	.	75058584	75058939	0	1	355	0
chr15	75058607	75059129	A549_Myers.45135	0	+	75058607	75059129	0	2	72,230	0,292
chr15	75058607	75059129	A549_Myers.45136	0	-	75058607	75059129	0	2	98,287	0,235
chr15	75058620	75059649	pHIT000025501	0	-	75058620	75059649	0	2	553,335	0,694
chr15	75059235	75059564	A549_Myers.45134	0	.	75059235	75059564	0	1	329	0
chr15	75061773	75062259	B_Cells_Pritchard.1921125	0	.	75061773	75062259	0	1	486	0
chr15	75066879	75067904	B_Cells_Pritchard.1921155	0	.	75066879	75067904	0	1	1025	0
chr15	75117768	75119835	prostate_normal.32428	0	.	75117768	75119835	0	1	2067	0
chr15	75120078	75120785	prostate_carcinoma.55648	0	.	75120078	75120785	0	1	707	0
chr15	75155407	75156125	REMC_MyoepithelialBreast.54295	0	.	75155407	75156125	0	1	718	0
chr15	75160923	75161797	B_Cells_Pritchard.1921409	0	.	75160923	75161797	0	1	874	0
chr15	75161076	75161968	REMC_BreastStem.29509	0	.	75161076	75161968	0	1	892	0
chr15	75161118	75162228	B_cells_Cheung.111986	0	.	75161118	75162228	0	1	1110	0
chr15	75163114	75163920	B_cells_Cheung.111987	0	.	75163114	75163920	0	1	806	0
chr15	75163190	75164140	B_Cells_Pritchard.1921419	0	.	75163190	75164140	0	1	950	0
chr15	75163223	75164137	H1_polyA+.65061	0	.	75163223	75164137	0	1	914	0
chr15	75163624	75164401	prostate_carcinoma.55653	0	.	75163624	75164401	0	1	777	0
chr15	75178175	75179015	melanoma_Garraway_short_term_cultures.38435	0	.	75178175	75179015	0	1	840	0
chr15	75182674	75185772	melanoma_Garraway_short_term_cultures.38437	0	.	75182674	75185772	0	1	3098	0
chr15	75182990	75184643	H1_polyA+.65081	0	.	75182990	75184643	0	1	1653	0
chr15	75183712	75184741	brain_AmbionMAQC.24348	0	.	75183712	75184741	0	1	1029	0
chr15	75183766	75184674	REMC_LuminalBreast.57265	0	.	75183766	75184674	0	1	908	0
chr15	75184760	75185318	B_Cells_Pritchard.1921501	0	.	75184760	75185318	0	1	558	0
chr15	75184814	75185780	H1_polyA+.65082	0	.	75184814	75185780	0	1	966	0
chr15	75568158	75569329	H1_polyA+.65153	0	.	75568158	75569329	0	1	1171	0
chr15	75571590	75573981	B_cells_Cheung.112167	0	.	75571590	75573981	0	1	2391	0
chr15	75571606	75573552	B_Cells_Pritchard.1922583	0	.	75571606	75573552	0	1	1946	0
chr15	75574055	75574695	B_cells_Cheung.112168	0	.	75574055	75574695	0	1	640	0
chr15	75575303	75585014	pHIT000114592	0	-	75575303	75585014	0	2	120,438	0,9273
chr15	75575303	75585014	pHIT000025505	0	-	75575303	75585014	0	3	120,51,438	0,8933,9273
chr15	75575303	75597140	pHIT000088311	0	-	75575303	75597140	0	4	120,51,438,90	0,8933,9273,21747
chr15	75575303	75623659	pHIT000114594	0	-	75575303	75623659	0	4	120,438,169,44	0,9273,37196,48312
chr15	75576065	75576564	B_Cells_Pritchard.1922591	0	.	75576065	75576564	0	1	499	0
chr15	75576106	75576934	A549_Myers.45196	0	.	75576106	75576934	0	1	828	0
chr15	75576107	75577217	B_cells_Cheung.112170	0	.	75576107	75577217	0	1	1110	0
chr15	75577294	75579168	H1_polyA+.65156	0	.	75577294	75579168	0	1	1874	0
chr15	75578372	75579007	B_cells_Cheung.112172	0	.	75578372	75579007	0	1	635	0
chr15	75581595	75582061	B_Cells_Pritchard.1922603	0	.	75581595	75582061	0	1	466	0
chr15	75582305	75587384	B_Cells_Pritchard.1922605	0	.	75582305	75587384	0	1	5079	0
chr15	75583621	75585469	B_cells_Cheung.112178	0	.	75583621	75585469	0	1	1848	0
chr15	75584499	75585023	A549_Myers.45197	0	.	75584499	75585023	0	1	524	0
chr15	75587148	75587784	B_cells_Cheung.112180	0	.	75587148	75587784	0	1	636	0
chr15	75589513	75590269	B_Cells_Pritchard.1922615	0	.	75589513	75590269	0	1	756	0
chr15	75589825	75590215	A549_Myers.45199	0	.	75589825	75590215	0	1	390	0
chr15	75590432	75590973	B_cells_Cheung.112181	0	.	75590432	75590973	0	1	541	0
chr15	75590474	75591799	H1_polyA+.65159	0	.	75590474	75591799	0	1	1325	0
chr15	75593865	75594670	B_Cells_Pritchard.1922631	0	.	75593865	75594670	0	1	805	0
chr15	75596072	75596591	A549_Myers.45200	0	.	75596072	75596591	0	1	519	0
chr15	75597791	75598377	A549_Myers.45201	0	.	75597791	75598377	0	1	586	0
chr15	75603168	75603768	B_cells_Cheung.112197	0	.	75603168	75603768	0	1	600	0
chr15	75603185	75603762	B_Cells_Pritchard.1922647	0	.	75603185	75603762	0	1	577	0
chr15	75603999	75604862	MeI_Garraway.9894	0	.	75603999	75604862	0	1	863	0
chr15	75605064	75606610	MeI_Garraway.9895	0	.	75605064	75606610	0	1	1546	0
chr15	75605911	75606541	B_Cells_Pritchard.1922661	0	.	75605911	75606541	0	1	630	0
chr15	75612237	75612709	B_cells_Cheung.112199	0	.	75612237	75612709	0	1	472	0
chr15	75620831	75621507	B_Cells_Pritchard.1922727	0	.	75620831	75621507	0	1	676	0
chr15	75621923	75622455	A549_Myers.45210	0	.	75621923	75622455	0	1	532	0
chr15	75622604	75623296	A549_Myers.45212	0	.	75622604	75623296	0	1	692	0
chr15	75628062	75628894	A549_Myers.45213	0	.	75628062	75628894	0	1	832	0
chr15	75648281	75653503	prostate_carcinoma.55686	0	+	75648281	75653503	0	3	292,195,1542	0,3366,3680
chr15	75653548	75653859	A549_Myers.45216	0	.	75653548	75653859	0	1	311	0
chr15	75655104	75657217	prostate_carcinoma.55689	0	.	75655104	75657217	0	1	2113	0
chr15	75658865	75659526	prostate_carcinoma.55692	0	.	75658865	75659526	0	1	661	0
chr15	75659582	75661268	prostate_carcinoma.55688	0	.	75659582	75661268	0	1	1686	0
chr15	75662338	75663001	prostate_carcinoma.55693	0	.	75662338	75663001	0	1	663	0
chr15	75663578	75664739	prostate_carcinoma.55695	0	.	75663578	75664739	0	1	1161	0
chr15	75671366	75672543	prostate_carcinoma.55696	0	.	75671366	75672543	0	1	1177	0
chr15	75686142	75686983	prostate_carcinoma.55699	0	.	75686142	75686983	0	1	841	0
chr15	75686456	75686969	A549_Myers.45222	0	.	75686456	75686969	0	1	513	0
chr15	75689641	75690089	A549_Myers.45223	0	.	75689641	75690089	0	1	448	0
chr15	75949819	75950212	A549_Myers.45275	0	.	75949819	75950212	0	1	393	0
chr15	75951561	75951937	A549_Myers.45276	0	.	75951561	75951937	0	1	376	0
chr15	75964736	75965290	REMC_BreastStem.28968	0	.	75964736	75965290	0	1	554	0
chr15	75964799	75965466	B_Cells_Pritchard.1923623	0	+	75964799	75965466	0	1	667	0
chr15	75964987	75965395	B_cells_Cheung.112209	0	.	75964987	75965395	0	1	408	0
chr15	75968585	75974235	pHIT000114596	0	+	75968585	75974235	0	3	69,223,137	0,2010,5513
chr15	75976662	75977603	B_Cells_Pritchard.1923655	0	.	75976662	75977603	0	1	941	0
chr15	75977734	75978288	B_Cells_Pritchard.1923657	0	.	75977734	75978288	0	1	554	0
chr15	75978401	75978878	B_Cells_Pritchard.1923659	0	.	75978401	75978878	0	1	477	0
chr15	75983618	75985227	B_Cells_Pritchard.1923685	0	.	75983618	75985227	0	1	1609	0
chr15	75985357	75985959	B_Cells_Pritchard.1923687	0	.	75985357	75985959	0	1	602	0
chr15	75987169	75989283	B_Cells_Pritchard.1923691	0	.	75987169	75989283	0	1	2114	0
chr15	75988749	75989254	B_cells_Cheung.112214	0	.	75988749	75989254	0	1	505	0
chr15	75989378	75989763	B_cells_Cheung.112215	0	.	75989378	75989763	0	1	385	0
chr15	75990026	75990680	B_Cells_Pritchard.1923697	0	.	75990026	75990680	0	1	654	0
chr15	76062325	76062652	REMC_BreastStem.28969	0	.	76062325	76062652	0	1	327	0
chr15	76212549	76213528	REMC_LuminalBreast.57345	0	.	76212549	76213528	0	1	979	0
chr15	76212664	76213571	prostate_carcinoma.55737	0	.	76212664	76213571	0	1	907	0
chr15	76212709	76213603	prostate_normal.32460	0	.	76212709	76213603	0	1	894	0
chr15	76212777	76214176	H1_polyA+.65014	0	.	76212777	76214176	0	1	1399	0
chr15	76218539	76220829	prostate_carcinoma.55743	0	.	76218539	76220829	0	1	2290	0
chr15	76218574	76220872	B_cells_Cheung.112257	0	.	76218574	76220872	0	1	2298	0
chr15	76223834	76224991	B_Cells_Pritchard.1924145	0	+	76223834	76224991	0	2	772,195	0,962
chr15	76226617	76227451	HepG2_Caltech_ENCODE.20323	0	.	76226617	76227451	0	1	834	0
chr15	76226796	76228544	Rinn_00023745	0	-	76226796	76228544	0	2	333,41	0,1707
chr15	76226852	76227208	A549_Myers.45316	0	.	76226852	76227208	0	1	356	0
chr15	76315364	76316293	H1_polyA+.65034	0	.	76315364	76316293	0	1	929	0
chr15	76320450	76320771	A549_Myers.45333	0	.	76320450	76320771	0	1	321	0
chr15	76381868	76387239	REMC_MyoepithelialBreast.53549	0	.	76381868	76387239	0	1	5371	0
chr15	76382973	76387237	REMC_BreastStem.28993	0	.	76382973	76387237	0	1	4264	0
chr15	76389600	76392471	REMC_BreastStem.28994	0	.	76389600	76392471	0	1	2871	0
chr15	76400513	76402260	REMC_BreastStem.28995	0	.	76400513	76402260	0	1	1747	0
chr15	76403486	76404383	H1_polyA+.65042	0	.	76403486	76404383	0	1	897	0
chr15	76403790	76405306	REMC_BreastStem.28996	0	.	76403790	76405306	0	1	1516	0
chr15	76406208	76408029	REMC_BreastStem.28998	0	.	76406208	76408029	0	1	1821	0
chr15	76410940	76411566	REMC_BreastStem.29000	0	.	76410940	76411566	0	1	626	0
chr15	76411910	76413020	REMC_BreastStem.29001	0	.	76411910	76413020	0	1	1110	0
chr15	76413815	76414700	REMC_BreastStem.29002	0	.	76413815	76414700	0	1	885	0
chr15	76454362	76454938	A549_Myers.45354	0	.	76454362	76454938	0	1	576	0
chr15	76484595	76485232	H1_polyA+.65048	0	.	76484595	76485232	0	1	637	0
chr15	76584873	76585467	B_cells_Cheung.112304	0	.	76584873	76585467	0	1	594	0
chr15	76759991	76760526	A549_Myers.45400	0	.	76759991	76760526	0	1	535	0
chr15	76765409	76766352	MCF7_Burge_Thompson.16807	0	.	76765409	76766352	0	1	943	0
chr15	76788424	76816098	pHIT000114618	0	+	76788424	76816098	0	11	9,120,51,82,107,87,108,88,116,81,141	0,19924,23193,23344,23522,24637,24832,25132,25612,26367,27533
chr15	76806572	76817753	XR_042348	0	+	76806572	76817753	0	14	85,121,82,40,52,83,108,88,109,89,485,82,110,120	0,1775,3818,4744,5044,5195,5373,6488,6683,6983,7463,8218,9384,11061
chr15	76806572	76817753	XR_018310	0	+	76806572	76817753	0	15	85,121,82,40,52,83,108,88,109,89,485,78,5,110,120	0,1775,3818,4744,5044,5195,5373,6488,6683,6983,7463,8218,9154,9384,11061
chr15	76806608	76817753	XR_042482	0	+	76806608	76817753	0	12	49,112,121,53,18,34,79,90,192,94,244,93	0,452,1739,2826,2889,3558,3782,6946,7427,7818,8182,11052
chr15	76811512	76816098	pHIT000114620	0	+	76811512	76816098	0	8	76,107,87,108,88,116,81,141	0,434,1549,1744,2044,2524,3279,4445
chr15	76811617	76816098	pHIT000025521	0	+	76811617	76816098	0	9	51,82,107,87,108,88,116,81,141	0,151,329,1444,1639,1939,2419,3174,4340
chr15	76822697	76829432	pHIT000025525	0	-	76822697	76829432	0	2	149,175	0,6560
chr15	76824017	76830212	pHIT000025522	0	-	76824017	76830212	0	3	170,241,117	0,5240,6078
chr15	76891875	76892712	A549_Myers.45415	0	+	76891875	76892712	0	2	554,39	0,798
chr15	76910360	76911262	pHIT000025528	0	+	76910360	76911262	0	2	246,555	0,347
chr15	76910360	76911141	pHIT000114622	0	+	76910360	76911141	0	2	246,434	0,347
chr15	76910564	76911534	A549_Myers.45417	0	.	76910564	76911534	0	1	970	0
chr15	76919034	76919773	H1_polyA+.65187	0	.	76919034	76919773	0	1	739	0
chr15	76980549	76981990	B_cells_Cheung.112414	0	.	76980549	76981990	0	1	1441	0
chr15	76980829	76981862	melanoma_Garraway_short_term_cultures.38598	0	.	76980829	76981862	0	1	1033	0
chr15	76982327	76982818	melanoma_Garraway_short_term_cultures.38599	0	.	76982327	76982818	0	1	491	0
chr15	76985231	76987627	CD4_Plagnol_activated.35932	0	.	76985231	76987627	0	1	2396	0
chr15	76986080	76987435	H1_polyA+.65206	0	.	76986080	76987435	0	1	1355	0
chr15	76986290	76987057	melanoma_Garraway_short_term_cultures.38603	0	.	76986290	76987057	0	1	767	0
chr15	76987291	76988428	REMC_BreastStem.29026	0	.	76987291	76988428	0	1	1137	0
chr15	76987324	76995900	REMC_MyoepithelialBreast.53566	0	.	76987324	76995900	0	1	8576	0
chr15	76988545	76990690	melanoma_Garraway_short_term_cultures.38605	0	.	76988545	76990690	0	1	2145	0
chr15	76988564	76990690	CD4_Plagnol_activated.35944	0	.	76988564	76990690	0	1	2126	0
chr15	76988564	76989557	CD4_Plagnol_resting.34989	0	.	76988564	76989557	0	1	993	0
chr15	76988569	76990871	H1_polyA+.65208	0	.	76988569	76990871	0	1	2302	0
chr15	76988583	76988931	H1_rRNA-depleted_UCSD_REMC.50242	0	.	76988583	76988931	0	1	348	0
chr15	76988589	76990682	REMC_BreastStem.29027	0	.	76988589	76990682	0	1	2093	0
chr15	76988610	76989087	brain_AmbionMAQC.24415	0	.	76988610	76989087	0	1	477	0
chr15	76989017	76990151	K562.25013	0	.	76989017	76990151	0	1	1134	0
chr15	76989046	76989888	MeWo_Garraway.20189	0	.	76989046	76989888	0	1	842	0
chr15	76990908	76994137	REMC_BreastStem.29028	0	.	76990908	76994137	0	1	3229	0
chr15	76991771	76992884	prostate_normal.32528	0	.	76991771	76992884	0	1	1113	0
chr15	76992028	76993140	B_Cells_Pritchard.1925753	0	.	76992028	76993140	0	1	1112	0
chr15	76992113	76993107	CD4_Plagnol_activated.35947	0	.	76992113	76993107	0	1	994	0
chr15	76996033	76997603	REMC_BreastStem.29030	0	.	76996033	76997603	0	1	1570	0
chr15	76996147	76996813	REMC_MyoepithelialBreast.53567	0	.	76996147	76996813	0	1	666	0
chr15	76996171	76997643	H1_polyA+.65210	0	.	76996171	76997643	0	1	1472	0
chr15	76996185	76999889	B_cells_Cheung.112416	0	.	76996185	76999889	0	1	3704	0
chr15	76996234	76996791	prostate_normal.32529	0	.	76996234	76996791	0	1	557	0
chr15	76997041	76997676	HepG2_Caltech_ENCODE.20358	0	.	76997041	76997676	0	1	635	0
chr15	76997740	76999029	REMC_BreastStem.29031	0	.	76997740	76999029	0	1	1289	0
chr15	76997744	76998381	H1_polyA+.65211	0	.	76997744	76998381	0	1	637	0
chr15	77171428	77172180	B_Cells_Pritchard.1926263	0	.	77171428	77172180	0	1	752	0
chr15	77171431	77172076	MCF7_Burge_Thompson.16824	0	.	77171431	77172076	0	1	645	0
chr15	77171478	77172097	prostate_carcinoma.55818	0	.	77171478	77172097	0	1	619	0
chr15	77171481	77171906	prostate_normal.32533	0	.	77171481	77171906	0	1	425	0
chr15	77249633	77250076	A549_Myers.45466	0	.	77249633	77250076	0	1	443	0
chr15	77261400	77261941	brain_AmbionMAQC.24427	0	.	77261400	77261941	0	1	541	0
chr15	77262589	77264799	prostate_carcinoma.55820	0	.	77262589	77264799	0	1	2210	0
chr15	77263216	77265057	brain_AmbionMAQC.24429	0	.	77263216	77265057	0	1	1841	0
chr15	77265173	77267286	brain_AmbionMAQC.24430	0	.	77265173	77267286	0	1	2113	0
chr15	77265211	77265610	prostate_carcinoma.55821	0	.	77265211	77265610	0	1	399	0
chr15	77270201	77270735	brain_AmbionMAQC.24431	0	.	77270201	77270735	0	1	534	0
chr15	77299357	77300181	Rinn_00023477	0	+	77299357	77300181	0	2	191,135	0,689
chr15	77304687	77305473	brain_AmbionMAQC.24435	0	.	77304687	77305473	0	1	786	0
chr15	77315719	77316024	MIP101.38688	0	.	77315719	77316024	0	1	305	0
chr15	77315806	77316531	H1_polyA+.65215	0	.	77315806	77316531	0	1	725	0
chr15	77316243	77316614	K562.25027	0	.	77316243	77316614	0	1	371	0
chr15	77575048	77575623	BT474_Burge_Thompson.18470	0	.	77575048	77575623	0	1	575	0
chr15	77638650	77639864	pHIT000025536	0	-	77638650	77639864	0	4	109,290,261,231	0,239,681,983
chr15	77638956	77639962	K562.25043	0	-	77638956	77639962	0	2	103,475	0,531
chr15	77639534	77639977	B_cells_Cheung.112514	0	.	77639534	77639977	0	1	443	0
chr15	77639537	77639964	HeLa_polyA+_Chen.20291	0	.	77639537	77639964	0	1	427	0
chr15	77639541	77639968	H1_polyA+.65246	0	.	77639541	77639968	0	1	427	0
chr15	77639542	77639958	HepG2_Caltech_ENCODE.20376	0	.	77639542	77639958	0	1	416	0
chr15	77891830	77893536	H1_polyA+.65250	0	.	77891830	77893536	0	1	1706	0
chr15	77892278	77895141	MIP101.38730	0	.	77892278	77895141	0	1	2863	0
chr15	77892851	77894112	REMC_MyoepithelialBreast.53589	0	.	77892851	77894112	0	1	1261	0
chr15	77893845	77896209	H1_polyA+.65251	0	.	77893845	77896209	0	1	2364	0
chr15	77900220	77900701	H1_rRNA-depleted_UCSD_REMC.50269	0	.	77900220	77900701	0	1	481	0
chr15	77903423	77907382	H1_polyA+.65253	0	.	77903423	77907382	0	1	3959	0
chr15	77904989	77907186	prostate_carcinoma.55882	0	.	77904989	77907186	0	1	2197	0
chr15	77905197	77905892	B_Cells_Pritchard.1928193	0	.	77905197	77905892	0	1	695	0
chr15	77907630	77916879	H1_polyA+.65254	0	.	77907630	77916879	0	1	9249	0
chr15	77908345	77912769	prostate_carcinoma.55883	0	.	77908345	77912769	0	1	4424	0
chr15	77909311	77912232	MIP101.38735	0	.	77909311	77912232	0	1	2921	0
chr15	77909727	77910894	melanoma_Garraway_short_term_cultures.38638	0	.	77909727	77910894	0	1	1167	0
chr15	77909902	77911844	B_Cells_Pritchard.1928215	0	.	77909902	77911844	0	1	1942	0
chr15	77912291	77914531	MIP101.38736	0	.	77912291	77914531	0	1	2240	0
chr15	77912860	77913580	B_cells_Cheung.112521	0	.	77912860	77913580	0	1	720	0
chr15	77912893	77914890	prostate_carcinoma.55884	0	.	77912893	77914890	0	1	1997	0
chr15	77912917	77913370	liver_polyA+.77570	0	.	77912917	77913370	0	1	453	0
chr15	77914399	77914855	B_Cells_Pritchard.1928225	0	.	77914399	77914855	0	1	456	0
chr15	77917104	77919373	H1_polyA+.65255	0	.	77917104	77919373	0	1	2269	0
chr15	78052203	78053391	B_Cells_Pritchard.1928465	0	.	78052203	78053391	0	1	1188	0
chr15	78055209	78055963	B_Cells_Pritchard.1928475	0	.	78055209	78055963	0	1	754	0
chr15	78056818	78058176	B_Cells_Pritchard.1928481	0	.	78056818	78058176	0	1	1358	0
chr15	78057653	78058094	B_cells_Cheung.112564	0	.	78057653	78058094	0	1	441	0
chr15	78058420	78059145	B_cells_Cheung.112565	0	.	78058420	78059145	0	1	725	0
chr15	78062837	78064563	B_cells_Cheung.112569	0	.	78062837	78064563	0	1	1726	0
chr15	78063285	78063957	B_Cells_Pritchard.1928503	0	.	78063285	78063957	0	1	672	0
chr15	78068472	78068997	B_cells_Cheung.112574	0	.	78068472	78068997	0	1	525	0
chr15	78085225	78087962	B_cells_Cheung.112586	0	.	78085225	78087962	0	1	2737	0
chr15	78095887	78096200	B_cells_Cheung.112596	0	.	78095887	78096200	0	1	313	0
chr15	78099206	78103228	B_cells_Cheung.112601	0	.	78099206	78103228	0	1	4022	0
chr15	78105329	78107452	B_cells_Cheung.112603	0	.	78105329	78107452	0	1	2123	0
chr15	78107816	78110140	B_cells_Cheung.112605	0	.	78107816	78110140	0	1	2324	0
chr15	78108276	78109900	B_Cells_Pritchard.1928679	0	.	78108276	78109900	0	1	1624	0
chr15	78228702	78229410	REMC_MyoepithelialBreast.53711	0	.	78228702	78229410	0	1	708	0
chr15	78269384	78270083	melanoma_Garraway_short_term_cultures.38695	0	.	78269384	78270083	0	1	699	0
chr15	78271112	78273194	MIP101.38803	0	.	78271112	78273194	0	1	2082	0
chr15	78271160	78272756	H1_polyA+.65317	0	.	78271160	78272756	0	1	1596	0
chr15	78271217	78271663	B_cells_Cheung.112656	0	.	78271217	78271663	0	1	446	0
chr15	78271217	78276110	REMC_MyoepithelialBreast.53716	0	.	78271217	78276110	0	1	4893	0
chr15	78271906	78273223	prostate_carcinoma.55993	0	.	78271906	78273223	0	1	1317	0
chr15	78272286	78272939	prostate_normal.32592	0	.	78272286	78272939	0	1	653	0
chr15	78272290	78273423	REMC_BreastStem.29099	0	.	78272290	78273423	0	1	1133	0
chr15	78273307	78275339	MIP101.38804	0	.	78273307	78275339	0	1	2032	0
chr15	78274224	78276817	B_Cells_Pritchard.1930949	0	+	78274224	78276817	0	1	2593	0
chr15	78274858	78277566	HepG2_Caltech_ENCODE.20403	0	.	78274858	78277566	0	1	2708	0
chr15	78274910	78276479	brain_AmbionMAQC.24481	0	.	78274910	78276479	0	1	1569	0
chr15	78274930	78276570	B_cells_Cheung.112660	0	.	78274930	78276570	0	1	1640	0
chr15	78276587	78280292	brain_AmbionMAQC.24483	0	.	78276587	78280292	0	1	3705	0
chr15	78280349	78281424	HepG2_Caltech_ENCODE.20405	0	.	78280349	78281424	0	1	1075	0
chr15	78280480	78281424	kidney_Gilad.49818	0	.	78280480	78281424	0	1	944	0
chr15	78280595	78331587	brain_AmbionMAQC.24484	0	-	78280595	78331587	0	3	816,152,184	0,2390,50808
chr15	78280609	78281396	prostate_carcinoma.55914	0	.	78280609	78281396	0	1	787	0
chr15	78280619	78281411	prostate_normal.32596	0	.	78280619	78281411	0	1	792	0
chr15	78280824	78281385	A549_Myers.45564	0	.	78280824	78281385	0	1	561	0
chr15	78281023	78281406	heart_Burge.16336	0	.	78281023	78281406	0	1	383	0
chr15	78291820	78292967	REMC_LuminalBreast.59316	0	.	78291820	78292967	0	1	1147	0
chr15	78296287	78298175	REMC_LuminalBreast.59318	0	.	78296287	78298175	0	1	1888	0
chr15	78308346	78310070	melanoma_Garraway_short_term_cultures.38707	0	.	78308346	78310070	0	1	1724	0
chr15	78312671	78313836	melanoma_Garraway_short_term_cultures.38710	0	.	78312671	78313836	0	1	1165	0
chr15	78312796	78313760	REMC_LuminalBreast.59319	0	.	78312796	78313760	0	1	964	0
chr15	78312952	78313663	liver_polyA+.77660	0	.	78312952	78313663	0	1	711	0
chr15	78320192	78321453	melanoma_Garraway_short_term_cultures.38711	0	.	78320192	78321453	0	1	1261	0
chr15	78321614	78322527	melanoma_Garraway_short_term_cultures.38712	0	.	78321614	78322527	0	1	913	0
chr15	78322668	78325117	melanoma_Garraway_short_term_cultures.38713	0	.	78322668	78325117	0	1	2449	0
chr15	78329545	78331092	melanoma_Garraway_short_term_cultures.38716	0	.	78329545	78331092	0	1	1547	0
chr15	78330830	78331601	A549_Myers.45565	0	.	78330830	78331601	0	1	771	0
chr15	78388036	78388413	A549_Myers.45566	0	.	78388036	78388413	0	1	377	0
chr15	78400145	78421173	Rinn_00023753	0	-	78400145	78421173	0	2	603,222	0,20806
chr15	78404062	78411963	pHIT000088569	0	+	78404062	78411963	0	2	11,400	0,7501
chr15	78411369	78411963	pHIT000114644	0	+	78411369	78411963	0	1	594	0
chr15	78444773	78445109	H1_polyA+.65335	0	.	78444773	78445109	0	1	336	0
chr15	78454612	78460451	melanoma_Garraway_short_term_cultures.38725	0	.	78454612	78460451	0	1	5839	0
chr15	78454616	78483604	H1_polyA+.65329	0	-	78454616	78483604	0	5	4934,63,102,84,499	0,22724,26911,28282,28489
chr15	78454622	78456546	MIP101.38808	0	.	78454622	78456546	0	1	1924	0
chr15	78454622	78459554	prostate_carcinoma.55918	0	+	78454622	78459554	0	2	2056,471	0,4461
chr15	78454622	78459077	prostate_carcinoma.55919	0	.	78454622	78459077	0	1	4455	0
chr15	78454676	78456420	A549_Myers.45570	0	.	78454676	78456420	0	1	1744	0
chr15	78454692	78458191	brain_AmbionMAQC.24491	0	.	78454692	78458191	0	1	3499	0
chr15	78455798	78456572	prostate_normal.32600	0	.	78455798	78456572	0	1	774	0
chr15	78455811	78456445	HepG2_Caltech_ENCODE.20408	0	.	78455811	78456445	0	1	634	0
chr15	78456167	78456812	H9_polyA+.25260	0	.	78456167	78456812	0	1	645	0
chr15	78456187	78457025	MDAMB231_Thompson.12665	0	.	78456187	78457025	0	1	838	0
chr15	78470470	78471618	H1_polyA+.65346	0	.	78470470	78471618	0	1	1148	0
chr15	78470750	78472849	melanoma_Garraway_short_term_cultures.38731	0	.	78470750	78472849	0	1	2099	0
chr15	78473021	78477654	melanoma_Garraway_short_term_cultures.38732	0	.	78473021	78477654	0	1	4633	0
chr15	78473083	78476641	H1_polyA+.65330	0	.	78473083	78476641	0	1	3558	0
chr15	78477098	78477543	H9_polyA+.25267	0	.	78477098	78477543	0	1	445	0
chr15	78477304	78483244	Rinn_00024186	0	-	78477304	78483244	0	3	99,85,140	0,5593,5800
chr15	78480764	78483339	REMC_MyoepithelialBreast.53636	0	-	78480764	78483339	0	2	2218,234	0,2341
chr15	78482872	78483604	MDAMB231_Thompson.12667	0	-	78482872	78483604	0	2	110,499	0,233
chr15	78694337	78696271	HIT000021577	0	-	78694337	78696271	0	1	1934	0
chr15	78694694	78695340	B_Cells_Pritchard.1930349	0	.	78694694	78695340	0	1	646	0
chr15	78856291	78856703	A549_Myers.45618	0	.	78856291	78856703	0	1	412	0
chr15	79070262	79072236	B_Cells_Pritchard.1931537	0	.	79070262	79072236	0	1	1974	0
chr15	79074757	79075613	prostate_carcinoma.56153	0	.	79074757	79075613	0	1	856	0
chr15	79076616	79077752	melanoma_Garraway_short_term_cultures.38821	0	.	79076616	79077752	0	1	1136	0
chr15	79239908	79240393	A549_Myers.45656	0	.	79239908	79240393	0	1	485	0
chr15	79459580	79463037	H1_polyA+.65417	0	.	79459580	79463037	0	1	3457	0
chr15	79459594	79462804	melanoma_Garraway_short_term_cultures.38847	0	.	79459594	79462804	0	1	3210	0
chr15	79461718	79462812	B_cells_Cheung.112887	0	.	79461718	79462812	0	1	1094	0
chr15	79467517	79467916	liver_polyA+.77778	0	.	79467517	79467916	0	1	399	0
chr15	79469370	79473434	H1_polyA+.65420	0	.	79469370	79473434	0	1	4064	0
chr15	79469483	79473450	prostate_carcinoma.56019	0	.	79469483	79473450	0	1	3967	0
chr15	79470442	79473337	prostate_normal.32694	0	.	79470442	79473337	0	1	2895	0
chr15	79470811	79475522	melanoma_Garraway_short_term_cultures.38852	0	.	79470811	79475522	0	1	4711	0
chr15	79471438	79472712	BT474_Burge_Thompson.18511	0	.	79471438	79472712	0	1	1274	0
chr15	79472043	79473299	MIP101.38921	0	.	79472043	79473299	0	1	1256	0
chr15	79472094	79472684	B_cells_Cheung.112897	0	.	79472094	79472684	0	1	590	0
chr15	79472113	79473302	B_Cells_Pritchard.1932847	0	.	79472113	79473302	0	1	1189	0
chr15	79472118	79472902	kidney_Gilad.49896	0	.	79472118	79472902	0	1	784	0
chr15	79472118	79472902	liver_polyA+.77783	0	.	79472118	79472902	0	1	784	0
chr15	79472818	79473389	B_cells_Cheung.112898	0	.	79472818	79473389	0	1	571	0
chr15	79476109	79476593	kidney_Gilad.49893	0	.	79476109	79476593	0	1	484	0
chr15	79489478	79492949	melanoma_Garraway_short_term_cultures.38858	0	.	79489478	79492949	0	1	3471	0
chr15	79489720	79490161	B_cells_Cheung.112911	0	.	79489720	79490161	0	1	441	0
chr15	79491193	79493052	H1_polyA+.65427	0	.	79491193	79493052	0	1	1859	0
chr15	79549765	79550163	liver_polyA+.77814	0	.	79549765	79550163	0	1	398	0
chr15	79563044	79578580	pHIT000114663	0	+	79563044	79578580	0	4	178,213,123,164	0,7692,9979,15372
chr15	79711710	79714831	H1_polyA+.65432	0	.	79711710	79714831	0	1	3121	0
chr15	79714976	79715451	H1_polyA+.65433	0	.	79714976	79715451	0	1	475	0
chr15	79715568	79726048	H1_polyA+.65434	0	.	79715568	79726048	0	1	10480	0
chr15	79717030	79717882	H9_polyA+.25292	0	.	79717030	79717882	0	1	852	0
chr15	79717034	79717777	NEC_from_H9.42256	0	.	79717034	79717777	0	1	743	0
chr15	79717117	79719192	MCF7_Burge_Thompson.16872	0	.	79717117	79719192	0	1	2075	0
chr15	79724418	79725789	MCF7_Burge_Thompson.16875	0	.	79724418	79725789	0	1	1371	0
chr15	79724450	79725442	prostate_carcinoma.56029	0	.	79724450	79725442	0	1	992	0
chr15	79724472	79725400	BT474_Burge_Thompson.18516	0	.	79724472	79725400	0	1	928	0
chr15	79724913	79725481	H9_polyA+.25299	0	.	79724913	79725481	0	1	568	0
chr15	79727324	79734467	H1_polyA+.65436	0	.	79727324	79734467	0	1	7143	0
chr15	79729164	79729924	MCF7_Burge_Thompson.16868	0	.	79729164	79729924	0	1	760	0
chr15	79729977	79733493	H9_polyA+.25302	0	.	79729977	79733493	0	1	3516	0
chr15	79730599	79731049	MCF7_Burge_Thompson.16869	0	.	79730599	79731049	0	1	450	0
chr15	79732004	79733077	NEC_from_H9.42262	0	.	79732004	79733077	0	1	1073	0
chr15	79732159	79733690	K562.25122	0	.	79732159	79733690	0	1	1531	0
chr15	79737941	79738374	H1_polyA+.65438	0	.	79737941	79738374	0	1	433	0
chr15	79742588	79747836	H1_polyA+.65441	0	.	79742588	79747836	0	1	5248	0
chr15	79755697	79757370	H1_polyA+.65443	0	.	79755697	79757370	0	1	1673	0
chr15	79758782	79761519	H1_polyA+.65445	0	.	79758782	79761519	0	1	2737	0
chr15	79761625	79771085	H1_polyA+.65446	0	.	79761625	79771085	0	1	9460	0
chr15	79767743	79768759	prostate_carcinoma.56030	0	.	79767743	79768759	0	1	1016	0
chr15	79768611	79769558	melanoma_Garraway_short_term_cultures.38862	0	.	79768611	79769558	0	1	947	0
chr15	79771431	79776618	H1_polyA+.65447	0	.	79771431	79776618	0	1	5187	0
chr15	79785626	79786128	HIT000250173	0	-	79785626	79786128	0	1	502	0
chr15	79791098	79791623	H1_polyA+.65451	0	.	79791098	79791623	0	1	525	0
chr15	79791911	79792737	H1_polyA+.65452	0	.	79791911	79792737	0	1	826	0
chr15	79801589	79801903	H1_rRNA-depleted_UCSD_REMC.50403	0	.	79801589	79801903	0	1	314	0
chr15	79828995	79830804	H1_polyA+.65463	0	.	79828995	79830804	0	1	1809	0
chr15	79829012	79829795	H9_polyA+.25312	0	.	79829012	79829795	0	1	783	0
chr15	79829935	79830576	H9_polyA+.25313	0	.	79829935	79830576	0	1	641	0
chr15	79831906	79835475	HIT000007037	0	+	79831906	79835475	0	1	3569	0
chr15	79831917	79834981	H1_polyA+.65464	0	.	79831917	79834981	0	1	3064	0
chr15	79835270	79836681	H1_polyA+.65465	0	.	79835270	79836681	0	1	1411	0
chr15	79840301	79841370	H1_polyA+.65468	0	.	79840301	79841370	0	1	1069	0
chr15	79847228	79849569	H1_polyA+.65471	0	.	79847228	79849569	0	1	2341	0
chr15	79848344	79848849	H9_polyA+.25315	0	.	79848344	79848849	0	1	505	0
chr15	79849693	79855192	H1_polyA+.65472	0	.	79849693	79855192	0	1	5499	0
chr15	79855310	79859372	H1_polyA+.65473	0	.	79855310	79859372	0	1	4062	0
chr15	79859481	79867960	H1_polyA+.65474	0	.	79859481	79867960	0	1	8479	0
chr15	79871450	79877393	H1_polyA+.65476	0	.	79871450	79877393	0	1	5943	0
chr15	79872475	79875202	K562.25161	0	.	79872475	79875202	0	1	2727	0
chr15	79873155	79874078	melanoma_Garraway_short_term_cultures.38864	0	.	79873155	79874078	0	1	923	0
chr15	79885912	79900203	H1_polyA+.65480	0	.	79885912	79900203	0	1	14291	0
chr15	79885912	79900203	H1_polyA+.65479	0	-	79885912	79900203	0	2	11341,2483	0,11808
chr15	79904069	79913872	H1_polyA+.65483	0	.	79904069	79913872	0	1	9803	0
chr15	79906054	79907538	K562.25165	0	.	79906054	79907538	0	1	1484	0
chr15	79914079	79916359	H1_polyA+.65484	0	.	79914079	79916359	0	1	2280	0
chr15	79916710	79926122	H1_polyA+.65485	0	.	79916710	79926122	0	1	9412	0
chr15	79920123	79922235	K562.25167	0	.	79920123	79922235	0	1	2112	0
chr15	79926300	79931537	H1_polyA+.65486	0	.	79926300	79931537	0	1	5237	0
chr15	79931663	79943314	H1_polyA+.65487	0	.	79931663	79943314	0	1	11651	0
chr15	79937942	79946351	khalil_819	0	.	79937942	79946351	0	4	241,3187,742,49	0,424,5299,8360
chr15	79943589	79945081	H1_polyA+.65488	0	.	79943589	79945081	0	1	1492	0
chr15	79945240	79948060	H1_polyA+.65489	0	.	79945240	79948060	0	1	2820	0
chr15	79958404	79958881	B_cells_Cheung.112920	0	.	79958404	79958881	0	1	477	0
chr15	79958410	79962330	H1_polyA+.65494	0	.	79958410	79962330	0	1	3920	0
chr15	79972098	79977907	H1_polyA+.65536	0	.	79972098	79977907	0	1	5809	0
chr15	79978025	80046775	H1_polyA+.65538	0	-	79978025	80046775	0	5	16828,1100,4365,81,312	0,27043,50513,55759,68438
chr15	79978025	79997353	H1_polyA+.65537	0	.	79978025	79997353	0	1	19328	0
chr15	79998761	79999967	H1_polyA+.65539	0	.	79998761	79999967	0	1	1206	0
chr15	80000503	80001777	H1_polyA+.65540	0	.	80000503	80001777	0	1	1274	0
chr15	80014850	80023942	H1_polyA+.65549	0	.	80014850	80023942	0	1	9092	0
chr15	80017532	80017849	H9_polyA+.25320	0	.	80017532	80017849	0	1	317	0
chr15	80027086	80089315	pHIT000025561	0	+	80027086	80089315	0	3	165,134,199	0,5003,62030
chr15	80038942	80043524	H1_polyA+.65555	0	.	80038942	80043524	0	1	4582	0
chr15	80060570	80064829	H1_polyA+.65530	0	.	80060570	80064829	0	1	4259	0
chr15	80081005	80082412	H1_polyA+.65535	0	.	80081005	80082412	0	1	1407	0
chr15	80154414	80156844	REMC_MyoepithelialBreast.53768	0	.	80154414	80156844	0	1	2430	0
chr15	80154896	80155239	A549_Myers.45686	0	.	80154896	80155239	0	1	343	0
chr15	80173329	80176392	REMC_MyoepithelialBreast.53779	0	.	80173329	80176392	0	1	3063	0
chr15	80175391	80176566	K562.25153	0	.	80175391	80176566	0	1	1175	0
chr15	80182567	80185821	REMC_MyoepithelialBreast.53783	0	.	80182567	80185821	0	1	3254	0
chr15	80187653	80189643	REMC_BreastStem.29185	0	.	80187653	80189643	0	1	1990	0
chr15	80188096	80190280	REMC_MyoepithelialBreast.53786	0	.	80188096	80190280	0	1	2184	0
chr15	80190405	80198212	REMC_MyoepithelialBreast.53787	0	.	80190405	80198212	0	1	7807	0
chr15	80190806	80193030	REMC_BreastStem.29186	0	.	80190806	80193030	0	1	2224	0
chr15	80199688	80201499	REMC_LuminalBreast.57677	0	.	80199688	80201499	0	1	1811	0
chr15	80204101	80205013	melanoma_Garraway_short_term_cultures.38873	0	.	80204101	80205013	0	1	912	0
chr15	80406962	80414022	HIT000050366	0	+	80406962	80414022	0	4	2385,147,168,2972	0,2465,3769,4088
chr15	80409229	80413810	pHIT000114668	0	+	80409229	80413810	0	5	96,122,116,36,158	0,198,1502,3610,4423
chr15	81115561	81116694	B_cells_Cheung.113029	0	-	81115561	81116694	0	2	179,867	0,266
chr15	81120297	81120691	B_Cells_Pritchard.1935413	0	.	81120297	81120691	0	1	394	0
chr15	81122420	81123091	B_Cells_Pritchard.1935419	0	.	81122420	81123091	0	1	671	0
chr15	81122424	81123154	B_cells_Cheung.113033	0	.	81122424	81123154	0	1	730	0
chr15	81206356	81210025	B_cells_Cheung.113080	0	.	81206356	81210025	0	1	3669	0
chr15	81206361	81211356	H1_polyA+.65611	0	.	81206361	81211356	0	1	4995	0
chr15	81208921	81209241	K562.25221	0	.	81208921	81209241	0	1	320	0
chr15	81208933	81210003	melanoma_Garraway_short_term_cultures.38907	0	.	81208933	81210003	0	1	1070	0
chr15	81210078	81211017	B_cells_Cheung.113081	0	.	81210078	81211017	0	1	939	0
chr15	81211463	81212053	H1_polyA+.65622	0	.	81211463	81212053	0	1	590	0
chr15	81211470	81212058	B_cells_Cheung.113083	0	.	81211470	81212058	0	1	588	0
chr15	81215231	81216672	K562.25215	0	.	81215231	81216672	0	1	1441	0
chr15	81215255	81217819	REMC_MyoepithelialBreast.53838	0	.	81215255	81217819	0	1	2564	0
chr15	81215274	81218662	REMC_LuminalBreast.57784	0	.	81215274	81218662	0	1	3388	0
chr15	81308291	81311446	HIT000049600	0	-	81308291	81311446	0	2	612,2014	0,1141
chr15	81308316	81309306	B_cells_Cheung.113158	0	.	81308316	81309306	0	1	990	0
chr15	81308319	81310229	T47D_Burge_Thompson.16011	0	.	81308319	81310229	0	1	1910	0
chr15	81308355	81309300	H9_polyA+.25360	0	.	81308355	81309300	0	1	945	0
chr15	81311777	81312101	A549_Myers.45731	0	.	81311777	81312101	0	1	324	0
chr15	81416548	81419997	HIT000048169	0	+	81416548	81419997	0	1	3449	0
chr15	81417836	81419060	B_cells_Cheung.113185	0	.	81417836	81419060	0	1	1224	0
chr15	81417895	81419091	B_Cells_Pritchard.1936173	0	.	81417895	81419091	0	1	1196	0
chr15	81417901	81419437	prostate_carcinoma.56214	0	.	81417901	81419437	0	1	1536	0
chr15	81418021	81418933	melanoma_Garraway_short_term_cultures.38927	0	.	81418021	81418933	0	1	912	0
chr15	81420442	81420796	B_cells_Cheung.113186	0	.	81420442	81420796	0	1	354	0
chr15	81420483	81421234	B_Cells_Pritchard.1936181	0	.	81420483	81421234	0	1	751	0
chr15	81420735	81421348	prostate_carcinoma.56216	0	.	81420735	81421348	0	1	613	0
chr15	81425215	81425818	B_cells_Cheung.113188	0	.	81425215	81425818	0	1	603	0
chr15	81428053	81432180	H1_polyA+.65651	0	.	81428053	81432180	0	1	4127	0
chr15	81429597	81431430	B_Cells_Pritchard.1936203	0	.	81429597	81431430	0	1	1833	0
chr15	81429647	81431714	prostate_carcinoma.56218	0	.	81429647	81431714	0	1	2067	0
chr15	81429649	81431109	B_cells_Cheung.113190	0	.	81429649	81431109	0	1	1460	0
chr15	81435800	81436439	B_cells_Cheung.113195	0	.	81435800	81436439	0	1	639	0
chr15	81439972	81441145	B_cells_Cheung.113200	0	.	81439972	81441145	0	1	1173	0
chr15	81440249	81442307	H1_polyA+.65656	0	.	81440249	81442307	0	1	2058	0
chr15	81440544	81441184	B_Cells_Pritchard.1936265	0	-	81440544	81441184	0	1	640	0
chr15	81440593	81441995	melanoma_Garraway_short_term_cultures.38928	0	.	81440593	81441995	0	1	1402	0
chr15	81443806	81445870	HIT000021964	0	-	81443806	81445870	0	1	2064	0
chr15	81444053	81444654	B_cells_Cheung.113204	0	.	81444053	81444654	0	1	601	0
chr15	81444187	81444659	prostate_carcinoma.56222	0	.	81444187	81444659	0	1	472	0
chr15	81472582	81473019	melanoma_Garraway_short_term_cultures.38944	0	.	81472582	81473019	0	1	437	0
chr15	81472613	81473049	MDAMB468_Thompson.13597	0	.	81472613	81473049	0	1	436	0
chr15	81472636	81472952	IMR90_UCSD_REMC.28605	0	-	81472636	81472952	0	1	316	0
chr15	81473381	81474433	prostate_normal.32774	0	.	81473381	81474433	0	1	1052	0
chr15	81473462	81473890	H1_rRNA-depleted_UCSD_REMC.50569	0	.	81473462	81473890	0	1	428	0
chr15	81473571	81473930	ovary_Raymond.153996	0	.	81473571	81473930	0	1	359	0
chr15	81539224	81540055	REMC_MyoepithelialBreast.53852	0	.	81539224	81540055	0	1	831	0
chr15	81545334	81546463	REMC_MyoepithelialBreast.53856	0	.	81545334	81546463	0	1	1129	0
chr15	81546443	81548361	REMC_BreastStem.29264	0	.	81546443	81548361	0	1	1918	0
chr15	81546718	81549193	REMC_MyoepithelialBreast.53894	0	.	81546718	81549193	0	1	2475	0
chr15	81565197	81566015	REMC_BreastStem.29274	0	.	81565197	81566015	0	1	818	0
chr15	81565207	81566028	REMC_MyoepithelialBreast.53900	0	.	81565207	81566028	0	1	821	0
chr15	81667657	81687953	Rinn_00023269	0	+	81667657	81687953	0	3	380,80,1011	0,13394,19285
chr15	81667658	81687953	ENST00000500581	0	+	81667658	81687953	0	3	379,79,1010	0,13394,19285
chr15	81667658	81687953	HIT000296686	0	+	81667658	81687953	0	3	379,79,1010	0,13394,19285
chr15	81675058	81675693	H1_polyA+.65704	0	.	81675058	81675693	0	1	635	0
chr15	81687170	81688647	H1_polyA+.65710	0	.	81687170	81688647	0	1	1477	0
chr15	81693266	81695577	H1_polyA+.65711	0	.	81693266	81695577	0	1	2311	0
chr15	81839438	81839899	A549_Myers.45790	0	.	81839438	81839899	0	1	461	0
chr15	81840357	81840677	A549_Myers.45791	0	.	81840357	81840677	0	1	320	0
chr15	82592568	82592881	B_cells_Cheung.113291	0	.	82592568	82592881	0	1	313	0
chr15	82648683	82649624	K562.25236	0	.	82648683	82649624	0	1	941	0
chr15	82649012	82649391	HepG2_Caltech_ENCODE.20480	0	.	82649012	82649391	0	1	379	0
chr15	82649019	82649403	REMC_MyoepithelialBreast.53932	0	.	82649019	82649403	0	1	384	0
chr15	82649045	82649402	REMC_BreastStem.29315	0	.	82649045	82649402	0	1	357	0
chr15	82649045	82649481	REMC_LuminalBreast.57853	0	.	82649045	82649481	0	1	436	0
chr15	82734607	82738159	HIT000020472	0	-	82734607	82738159	0	2	234,3246	0,306
chr15	82735259	82737543	HIT000016382	0	-	82735259	82737543	0	1	2284	0
chr15	82736397	82737285	K562.25294	0	.	82736397	82737285	0	1	888	0
chr15	82736707	82738714	REMC_MyoepithelialBreast.53935	0	.	82736707	82738714	0	1	2007	0
chr15	82736862	82737523	REMC_BreastStem.29320	0	.	82736862	82737523	0	1	661	0
chr15	82736894	82737995	melanoma_Garraway_short_term_cultures.38969	0	.	82736894	82737995	0	1	1101	0
chr15	82737581	82738710	HIT000049046	0	-	82737581	82738710	0	1	1129	0
chr15	82741208	82742296	REMC_MyoepithelialBreast.53936	0	.	82741208	82742296	0	1	1088	0
chr15	82742523	82742997	REMC_MyoepithelialBreast.53937	0	.	82742523	82742997	0	1	474	0
chr15	82742885	82744144	K562.25296	0	.	82742885	82744144	0	1	1259	0
chr15	82744306	82744760	B_cells_Cheung.113299	0	.	82744306	82744760	0	1	454	0
chr15	82744316	82745480	brain_AmbionMAQC.24604	0	.	82744316	82745480	0	1	1164	0
chr15	82744335	82745457	A549_Myers.45804	0	-	82744335	82745457	0	2	216,313	0,809
chr15	82744815	82745457	A549_Myers.45805	0	.	82744815	82745457	0	1	642	0
chr15	82744891	82745482	B_cells_Cheung.113300	0	.	82744891	82745482	0	1	591	0
chr15	82745103	82745410	HepG2_Caltech_ENCODE.20483	0	.	82745103	82745410	0	1	307	0
chr15	82748569	82748914	H1_polyA+.65749	0	.	82748569	82748914	0	1	345	0
chr15	82768319	82771585	HIT000429898_05	0	+	82768319	82771585	0	4	26,125,988,73	0,724,1117,3193
chr15	82915192	82916571	testes_Burge.29272	0	+	82915192	82916571	0	2	271,122	0,1257
chr15	82973616	82975363	REMC_LuminalBreast.57917	0	.	82973616	82975363	0	1	1747	0
chr15	82974234	82975309	B_cells_Cheung.113322	0	.	82974234	82975309	0	1	1075	0
chr15	82974376	82975014	prostate_normal.32831	0	.	82974376	82975014	0	1	638	0
chr15	82974393	82974956	melanoma_Garraway_short_term_cultures.38982	0	.	82974393	82974956	0	1	563	0
chr15	82974395	82975008	liver_polyA+.78073	0	.	82974395	82975008	0	1	613	0
chr15	82974400	82975178	REMC_MyoepithelialBreast.54001	0	.	82974400	82975178	0	1	778	0
chr15	82974406	82975070	MIP101.39125	0	.	82974406	82975070	0	1	664	0
chr15	83009336	83011313	H1_polyA+.65796	0	.	83009336	83011313	0	1	1977	0
chr15	83009869	83011313	REMC_LuminalBreast.57906	0	.	83009869	83011313	0	1	1444	0
chr15	83072224	83073158	B_cells_Cheung.113369	0	.	83072224	83073158	0	1	934	0
chr15	83072309	83072618	CD4_Plagnol_resting.35200	0	.	83072309	83072618	0	1	309	0
chr15	83072331	83073659	B_Cells_Pritchard.1940685	0	+	83072331	83073659	0	1	1328	0
chr15	83077313	83078536	REMC_BreastStem.29343	0	.	83077313	83078536	0	1	1223	0
chr15	83077321	83079007	B_Cells_Pritchard.1939567	0	+	83077321	83079007	0	1	1686	0
chr15	83078843	83080004	B_cells_Cheung.113375	0	.	83078843	83080004	0	1	1161	0
chr15	83080539	83081070	CD4_Plagnol_resting.35202	0	.	83080539	83081070	0	1	531	0
chr15	83082608	83083140	prostate_carcinoma.56597	0	.	83082608	83083140	0	1	532	0
chr15	83087656	83088541	REMC_LuminalBreast.57934	0	.	83087656	83088541	0	1	885	0
chr15	83088012	83089635	REMC_BreastStem.29345	0	.	83088012	83089635	0	1	1623	0
chr15	83152850	83153260	B_cells_Cheung.113418	0	.	83152850	83153260	0	1	410	0
chr15	83154073	83155938	B_Cells_Pritchard.1939687	0	.	83154073	83155938	0	1	1865	0
chr15	83154359	83156012	REMC_LuminalBreast.57939	0	.	83154359	83156012	0	1	1653	0
chr15	83154519	83155517	REMC_MyoepithelialBreast.53979	0	.	83154519	83155517	0	1	998	0
chr15	83154854	83155282	B_cells_Cheung.113421	0	.	83154854	83155282	0	1	428	0
chr15	83223259	83226571	REMC_LuminalBreast.57953	0	.	83223259	83226571	0	1	3312	0
chr15	83223552	83224509	H1_polyA+.65853	0	.	83223552	83224509	0	1	957	0
chr15	83293920	83295244	REMC_LuminalBreast.57962	0	.	83293920	83295244	0	1	1324	0
chr15	83293963	83295598	liver_polyA+.78454	0	-	83293963	83295598	0	2	901,373	0,1262
chr15	83299621	83300187	A549_Myers.45873	0	.	83299621	83300187	0	1	566	0
chr15	83299924	83302853	REMC_LuminalBreast.57963	0	.	83299924	83302853	0	1	2929	0
chr15	83304523	83305281	HepG2_Caltech_ENCODE.20526	0	.	83304523	83305281	0	1	758	0
chr15	83310471	83312171	HepG2_Caltech_ENCODE.20528	0	.	83310471	83312171	0	1	1700	0
chr15	83312310	83319220	HepG2_Caltech_ENCODE.20529	0	.	83312310	83319220	0	1	6910	0
chr15	83312681	83318158	REMC_LuminalBreast.57965	0	.	83312681	83318158	0	1	5477	0
chr15	83485566	83487256	REMC_LuminalBreast.57984	0	.	83485566	83487256	0	1	1690	0
chr15	83485611	83486427	B_cells_Cheung.113444	0	.	83485611	83486427	0	1	816	0
chr15	83485648	83486399	REMC_MyoepithelialBreast.54056	0	.	83485648	83486399	0	1	751	0
chr15	83485649	83486568	B_Cells_Pritchard.1940735	0	.	83485649	83486568	0	1	919	0
chr15	83486018	83487215	melanoma_Garraway_short_term_cultures.39042	0	.	83486018	83487215	0	1	1197	0
chr15	83488487	83490626	REMC_BreastStem.29371	0	.	83488487	83490626	0	1	2139	0
chr15	83489020	83489784	REMC_LuminalBreast.57985	0	.	83489020	83489784	0	1	764	0
chr15	83489373	83490104	REMC_MyoepithelialBreast.54057	0	.	83489373	83490104	0	1	731	0
chr15	83492329	83493150	REMC_BreastStem.29373	0	.	83492329	83493150	0	1	821	0
chr15	83492347	83493323	REMC_LuminalBreast.57988	0	.	83492347	83493323	0	1	976	0
chr15	83492483	83494967	REMC_MyoepithelialBreast.54059	0	.	83492483	83494967	0	1	2484	0
chr15	83499574	83502362	REMC_LuminalBreast.57992	0	.	83499574	83502362	0	1	2788	0
chr15	83499591	83501489	REMC_BreastStem.29377	0	.	83499591	83501489	0	1	1898	0
chr15	83503611	83506404	REMC_LuminalBreast.57994	0	.	83503611	83506404	0	1	2793	0
chr15	83514024	83515570	REMC_LuminalBreast.57998	0	.	83514024	83515570	0	1	1546	0
chr15	83518033	83519133	REMC_LuminalBreast.57999	0	.	83518033	83519133	0	1	1100	0
chr15	83519236	83520720	REMC_LuminalBreast.58000	0	.	83519236	83520720	0	1	1484	0
chr15	83521117	83521751	REMC_LuminalBreast.58001	0	.	83521117	83521751	0	1	634	0
chr15	83671208	83674526	Rinn_00024194	0	-	83671208	83674526	0	2	87,215	0,3103
chr15	84094610	84095077	T47D_Burge_Thompson.16074	0	.	84094610	84095077	0	1	467	0
chr15	84095326	84096233	HepG2_Caltech_ENCODE.20546	0	.	84095326	84096233	0	1	907	0
chr15	84095331	84095802	H1_polyA+.66068	0	.	84095331	84095802	0	1	471	0
chr15	84095343	84095880	B_Cells_Pritchard.1941909	0	.	84095343	84095880	0	1	537	0
chr15	84095901	84096645	CD4_Plagnol_resting.35299	0	.	84095901	84096645	0	1	744	0
chr15	84095904	84096639	H1_polyA+.66069	0	.	84095904	84096639	0	1	735	0
chr15	84095927	84096615	T47D_Burge_Thompson.16075	0	.	84095927	84096615	0	1	688	0
chr15	84096199	84097446	prostate_carcinoma.56340	0	.	84096199	84097446	0	1	1247	0
chr15	84096688	84097602	REMC_BreastStem.29404	0	.	84096688	84097602	0	1	914	0
chr15	84096796	84097268	CD4_Plagnol_resting.35300	0	.	84096796	84097268	0	1	472	0
chr15	84096802	84098767	B_cells_Cheung.114169	0	.	84096802	84098767	0	1	1965	0
chr15	84096807	84097427	B_Cells_Pritchard.1941913	0	.	84096807	84097427	0	1	620	0
chr15	84096864	84097263	prostate_normal.32935	0	.	84096864	84097263	0	1	399	0
chr15	84097240	84098048	HepG2_Caltech_ENCODE.20547	0	.	84097240	84098048	0	1	808	0
chr15	84097543	84098237	prostate_carcinoma.56341	0	.	84097543	84098237	0	1	694	0
chr15	84097553	84097865	prostate_normal.32936	0	.	84097553	84097865	0	1	312	0
chr15	84097576	84098027	liver_polyA+.78535	0	.	84097576	84098027	0	1	451	0
chr15	84097583	84099157	B_Cells_Pritchard.1941915	0	.	84097583	84099157	0	1	1574	0
chr15	84099319	84100434	B_cells_Cheung.114170	0	.	84099319	84100434	0	2	219,799	0,316
chr15	84099411	84100215	MIP101.39154	0	.	84099411	84100215	0	1	804	0
chr15	84099427	84100356	HepG2_Caltech_ENCODE.20549	0	.	84099427	84100356	0	1	929	0
chr15	84099438	84100472	HIT000250395	0	+	84099438	84100472	0	3	38,138,416	0,314,618
chr15	84099451	84101751	B_Cells_Pritchard.1941923	0	.	84099451	84101751	0	1	2300	0
chr15	84099674	84100463	A549_Myers.45973	0	.	84099674	84100463	0	1	789	0
chr15	84099739	84100214	CD4_Plagnol_resting.35307	0	.	84099739	84100214	0	1	475	0
chr15	84099744	84100311	CD4_Plagnol_activated.36174	0	.	84099744	84100311	0	1	567	0
chr15	84099797	84100237	REMC_BreastStem.29405	0	.	84099797	84100237	0	1	440	0
chr15	84100047	84100670	T47D_Burge_Thompson.16076	0	.	84100047	84100670	0	1	623	0
chr15	84100578	84102356	HepG2_Caltech_ENCODE.20550	0	.	84100578	84102356	0	1	1778	0
chr15	84100709	84101260	A549_Myers.45974	0	.	84100709	84101260	0	1	551	0
chr15	84100780	84102225	CD4_Plagnol_activated.36175	0	.	84100780	84102225	0	1	1445	0
chr15	84100880	84101481	CD4_Plagnol_resting.35308	0	.	84100880	84101481	0	1	601	0
chr15	84100978	84101387	H9_polyA+.25460	0	.	84100978	84101387	0	1	409	0
chr15	84101146	84101917	T47D_Burge_Thompson.16060	0	.	84101146	84101917	0	1	771	0
chr15	84142554	84143769	REMC_LuminalBreast.58051	0	.	84142554	84143769	0	1	1215	0
chr15	84230541	84231015	A549_Myers.45960	0	.	84230541	84231015	0	1	474	0
chr15	85390909	85394047	MCF7_Burge_Thompson.16985	0	.	85390909	85394047	0	1	3138	0
chr15	85390982	85393472	B_cells_Cheung.113581	0	.	85390982	85393472	0	1	2490	0
chr15	85391027	85393514	H1_polyA+.65957	0	.	85391027	85393514	0	1	2487	0
chr15	85392258	85393541	melanoma_Garraway_short_term_cultures.39073	0	.	85392258	85393541	0	1	1283	0
chr15	85468168	85469027	MCF7_Burge_Thompson.16994	0	.	85468168	85469027	0	1	859	0
chr15	85601609	85602411	K562.25310	0	.	85601609	85602411	0	1	802	0
chr15	85603707	85605094	K562.25311	0	.	85603707	85605094	0	1	1387	0
chr15	85641214	85641829	K562.25317	0	.	85641214	85641829	0	1	615	0
chr15	85699556	85700166	K562.25367	0	.	85699556	85700166	0	1	610	0
chr15	85764681	85765357	K562.25377	0	.	85764681	85765357	0	1	676	0
chr15	85916001	85917583	K562.25323	0	.	85916001	85917583	0	1	1582	0
chr15	85925644	85928597	MCF7_Burge_Thompson.17445	0	.	85925644	85928597	0	1	2953	0
chr15	85941331	85942490	MCF7_Burge_Thompson.17458	0	.	85941331	85942490	0	1	1159	0
chr15	85961001	85961444	MCF7_Burge_Thompson.17464	0	.	85961001	85961444	0	1	443	0
chr15	86021264	86023136	K562.25354	0	.	86021264	86023136	0	1	1872	0
chr15	86037115	86038184	K562.25361	0	.	86037115	86038184	0	1	1069	0
chr15	86078162	86096834	pHIT000025602	0	+	86078162	86096834	0	2	108,267	0,18405
chr15	86124927	86161166	pHIT000087941	0	-	86124927	86161166	0	4	468,72,111,54	0,9962,35238,36185
chr15	86124927	86160276	pHIT000114729	0	-	86124927	86160276	0	3	468,72,111	0,9962,35238
chr15	86602412	86602728	A549_Myers.46018	0	.	86602412	86602728	0	1	316	0
chr15	86618757	86619484	A549_Myers.46013	0	.	86618757	86619484	0	1	727	0
chr15	86632440	86632769	A549_Myers.46019	0	.	86632440	86632769	0	1	329	0
chr15	86783361	86783760	A549_Myers.46024	0	.	86783361	86783760	0	1	399	0
chr15	86791244	86792750	REMC_LuminalBreast.58053	0	.	86791244	86792750	0	1	1506	0
chr15	86791289	86791741	brain_AmbionMAQC.24685	0	.	86791289	86791741	0	1	452	0
chr15	86791396	86791841	prostate_carcinoma.56378	0	.	86791396	86791841	0	1	445	0
chr15	86792840	86794769	brain_AmbionMAQC.24688	0	.	86792840	86794769	0	1	1929	0
chr15	86793037	86793607	prostate_carcinoma.56379	0	.	86793037	86793607	0	1	570	0
chr15	86794062	86795091	BT474_Burge_Thompson.18618	0	.	86794062	86795091	0	1	1029	0
chr15	86794306	86795187	prostate_carcinoma.56380	0	.	86794306	86795187	0	1	881	0
chr15	86797179	86798073	BT474_Burge_Thompson.18619	0	.	86797179	86798073	0	1	894	0
chr15	86797548	86798201	brain_AmbionMAQC.24690	0	.	86797548	86798201	0	1	653	0
chr15	86911828	86912877	HIT000048760	0	-	86911828	86912877	0	1	1049	0
chr15	86948528	86949092	A549_Myers.46051	0	.	86948528	86949092	0	1	564	0
chr15	86956400	86956801	brain_AmbionMAQC.24719	0	.	86956400	86956801	0	1	401	0
chr15	86977871	86978311	HepG2_Caltech_ENCODE.20570	0	.	86977871	86978311	0	1	440	0
chr15	87000978	87003048	B_cells_Cheung.113619	0	.	87000978	87003048	0	1	2070	0
chr15	87004673	87009792	REMC_MyoepithelialBreast.54096	0	.	87004673	87009792	0	1	5119	0
chr15	87006359	87008196	REMC_BreastStem.29486	0	.	87006359	87008196	0	1	1837	0
chr15	87007079	87008706	B_Cells_Pritchard.1948529	0	.	87007079	87008706	0	1	1627	0
chr15	87010611	87013517	REMC_LuminalBreast.58071	0	.	87010611	87013517	0	1	2906	0
chr15	87011116	87012528	REMC_MyoepithelialBreast.54097	0	.	87011116	87012528	0	1	1412	0
chr15	87011161	87013510	REMC_BreastStem.29489	0	.	87011161	87013510	0	1	2349	0
chr15	87013751	87022553	REMC_LuminalBreast.58072	0	.	87013751	87022553	0	1	8802	0
chr15	87014078	87017498	REMC_MyoepithelialBreast.54098	0	.	87014078	87017498	0	1	3420	0
chr15	87017115	87017453	B_cells_Cheung.113630	0	.	87017115	87017453	0	1	338	0
chr15	87020119	87021919	REMC_BreastStem.29492	0	.	87020119	87021919	0	1	1800	0
chr15	87020767	87021874	REMC_MyoepithelialBreast.54100	0	.	87020767	87021874	0	1	1107	0
chr15	87025468	87026409	REMC_MyoepithelialBreast.54102	0	.	87025468	87026409	0	1	941	0
chr15	87026030	87026636	REMC_BreastStem.29493	0	.	87026030	87026636	0	1	606	0
chr15	87027359	87028529	REMC_BreastStem.29494	0	.	87027359	87028529	0	1	1170	0
chr15	87034192	87035554	REMC_LuminalBreast.58073	0	.	87034192	87035554	0	1	1362	0
chr15	87039870	87040539	B_Cells_Pritchard.1948591	0	.	87039870	87040539	0	1	669	0
chr15	87059129	87059446	A549_Myers.46058	0	.	87059129	87059446	0	1	317	0
chr15	87069159	87069809	A549_Myers.46060	0	.	87069159	87069809	0	1	650	0
chr15	87144469	87145419	MIP101.39178	0	.	87144469	87145419	0	1	950	0
chr15	87303897	87305353	A549_Myers.46089	0	+	87303897	87305353	0	2	1225,123	0,1333
chr15	87303996	87305288	pHIT000114746	0	+	87303996	87305288	0	3	110,340,369	0,484,923
chr15	87330244	87332729	H1_polyA+.66086	0	.	87330244	87332729	0	1	2485	0
chr15	87334665	87335186	H1_polyA+.66090	0	.	87334665	87335186	0	1	521	0
chr15	87337084	87344334	H1_polyA+.66088	0	.	87337084	87344334	0	1	7250	0
chr15	87340419	87344822	H9_polyA+.25507	0	-	87340419	87344822	0	2	2177,314	0,4089
chr15	87340419	87342783	H9_polyA+.25508	0	.	87340419	87342783	0	1	2364	0
chr15	87345148	87350865	H1_polyA+.66093	0	.	87345148	87350865	0	1	5717	0
chr15	87346582	87347607	H9_polyA+.25511	0	.	87346582	87347607	0	1	1025	0
chr15	87347716	87349491	H9_polyA+.25513	0	.	87347716	87349491	0	1	1775	0
chr15	87351003	87355338	H1_polyA+.66094	0	.	87351003	87355338	0	1	4335	0
chr15	87356555	87364185	H1_polyA+.66089	0	.	87356555	87364185	0	1	7630	0
chr15	87358130	87359719	H9_polyA+.25520	0	.	87358130	87359719	0	1	1589	0
chr15	87360585	87363289	H9_polyA+.25523	0	.	87360585	87363289	0	1	2704	0
chr15	87361580	87362262	A549_Myers.46101	0	.	87361580	87362262	0	1	682	0
chr15	87385242	87386761	H1_polyA+.66100	0	.	87385242	87386761	0	1	1519	0
chr15	87387216	87387975	H1_polyA+.66101	0	.	87387216	87387975	0	1	759	0
chr15	87387687	87388103	BT474_Burge_Thompson.18641	0	.	87387687	87388103	0	1	416	0
chr15	87387731	87388105	ZR751_Thompson.13572	0	.	87387731	87388105	0	1	374	0
chr15	87387732	87388155	B_Cells_Pritchard.1949605	0	.	87387732	87388155	0	1	423	0
chr15	87402653	87404231	H1_polyA+.66105	0	.	87402653	87404231	0	1	1578	0
chr15	87418583	87422966	H1_polyA+.66107	0	.	87418583	87422966	0	1	4383	0
chr15	87426104	87427121	H1_polyA+.66110	0	.	87426104	87427121	0	1	1017	0
chr15	87550207	87550590	melanoma_Garraway_short_term_cultures.39141	0	.	87550207	87550590	0	1	383	0
chr15	87585912	87586289	B_cells_Cheung.113710	0	.	87585912	87586289	0	1	377	0
chr15	87585933	87587171	REMC_MyoepithelialBreast.54214	0	.	87585933	87587171	0	1	1238	0
chr15	87687226	87687826	A549_Myers.46143	0	.	87687226	87687826	0	1	600	0
chr15	87702572	87707672	pHIT000025624	0	+	87702572	87707672	0	3	183,104,97	0,3828,5003
chr15	87702688	87703623	A549_Myers.46146	0	.	87702688	87703623	0	1	935	0
chr15	87703075	87704612	HIT000275855	0	-	87703075	87704612	0	1	1537	0
chr15	87705748	87706221	A549_Myers.46148	0	.	87705748	87706221	0	1	473	0
chr15	87706410	87707195	A549_Myers.46149	0	.	87706410	87707195	0	1	785	0
chr15	87709328	87709659	A549_Myers.46150	0	.	87709328	87709659	0	1	331	0
chr15	87711217	87711893	A549_Myers.46151	0	.	87711217	87711893	0	1	676	0
chr15	87715314	87716451	A549_Myers.46153	0	.	87715314	87716451	0	1	1137	0
chr15	87717225	87717569	brain_AmbionMAQC.24776	0	.	87717225	87717569	0	1	344	0
chr15	87719595	87742724	Rinn_00023496	0	+	87719595	87742724	0	5	2805,66,79,139,3463	0,12455,13142,13983,19666
chr15	87720770	87721615	brain_AmbionMAQC.24778	0	.	87720770	87721615	0	1	845	0
chr15	87721388	87721893	testes_Burge.29436	0	.	87721388	87721893	0	1	505	0
chr15	87721893	87722209	brain_AmbionMAQC.24779	0	.	87721893	87722209	0	1	316	0
chr15	87722222	87742696	Rinn_00023497	0	+	87722222	87742696	0	4	178,66,139,3435	0,9828,11356,17039
chr15	87722226	87742796	BT474_Burge_Thompson.18677	0	+	87722226	87742796	0	6	174,223,65,81,138,3534	0,1055,9825,10509,11353,17036
chr15	87722274	87742717	H1_polyA+.66134	0	+	87722274	87742717	0	5	126,728,78,138,3455	0,9114,10464,11305,16988
chr15	87722275	87742722	Rinn_00023192	0	+	87722275	87742722	0	7	125,223,109,66,82,139,3461	0,1006,9389,9775,10459,11303,16986
chr15	87722276	87742722	NR_015411	0	+	87722276	87742722	0	7	124,222,108,65,81,138,3460	0,1006,9389,9775,10459,11303,16986
chr15	87722350	87740701	HIT000045165	0	+	87722350	87740701	0	7	50,222,108,65,81,138,1439	0,932,9315,9701,10385,11229,16912
chr15	87722591	87723580	T47D_Burge_Thompson.16093	0	.	87722591	87723580	0	1	989	0
chr15	87722845	87742646	REMC_MyoepithelialBreast.54231	0	+	87722845	87742646	0	5	659,65,193,138,3384	0,9206,9778,10734,16417
chr15	87722956	87723580	B_cells_Cheung.113717	0	.	87722956	87723580	0	1	624	0
chr15	87723152	87723506	B_Cells_Pritchard.1950297	0	.	87723152	87723506	0	1	354	0
chr15	87723213	87724378	pHIT000025625	0	+	87723213	87724378	0	2	291,63	0,1102
chr15	87723354	87723938	A549_Myers.46154	0	.	87723354	87723938	0	1	584	0
chr15	87723470	87742724	Rinn_00023498	0	+	87723470	87742724	0	5	34,66,82,139,3463	0,8580,9264,10108,15791
chr15	87723497	87742723	Rinn_00023499	0	+	87723497	87742723	0	4	7,66,139,3462	0,8553,10081,15764
chr15	87724113	87742724	Rinn_00023500	0	+	87724113	87742724	0	5	39,66,82,139,3463	0,7937,8621,9465,15148
chr15	87726405	87728077	melanoma_Garraway_short_term_cultures.39156	0	.	87726405	87728077	0	1	1672	0
chr15	87730830	87740701	HIT000043665	0	+	87730830	87740701	0	4	1286,81,138,1439	0,1905,2749,8432
chr15	87731556	87742724	prostate_carcinoma.56505	0	+	87731556	87742724	0	3	560,138,3462	0,2023,7706
chr15	87731673	87742724	Rinn_00023501	0	+	87731673	87742724	0	4	59,66,139,3463	0,377,1905,7588
chr15	87731950	87742718	B_cells_Cheung.113718	0	+	87731950	87742718	0	3	166,138,3456	0,1629,7312
chr15	87732734	87742719	T47D_Burge_Thompson.16094	0	+	87732734	87742719	0	3	82,138,3457	0,845,6528
chr15	87733176	87733717	prostate_normal.32969	0	.	87733176	87733717	0	1	541	0
chr15	87733446	87742257	ZR751_Thompson.13583	0	+	87733446	87742257	0	2	271,2995	0,5816
chr15	87734963	87735813	prostate_carcinoma.56508	0	.	87734963	87735813	0	1	850	0
chr15	87736624	87737971	prostate_carcinoma.56509	0	.	87736624	87737971	0	1	1347	0
chr15	87736685	87742723	brain_AmbionMAQC.24775	0	.	87736685	87742723	0	1	6038	0
chr15	87736899	87738072	HIT000044764	0	+	87736899	87738072	0	1	1173	0
chr15	87738289	87742723	melanoma_Garraway_short_term_cultures.39158	0	.	87738289	87742723	0	1	4434	0
chr15	87739152	87742672	MCF7_Burge_Thompson.17035	0	.	87739152	87742672	0	1	3520	0
chr15	87739188	87742719	T47D_Burge_Thompson.16095	0	.	87739188	87742719	0	1	3531	0
chr15	87739199	87742689	B_Cells_Pritchard.1950377	0	.	87739199	87742689	0	1	3490	0
chr15	87739227	87742700	MDAMB468_Thompson.13648	0	.	87739227	87742700	0	1	3473	0
chr15	87739233	87742724	prostate_carcinoma.56506	0	.	87739233	87742724	0	1	3491	0
chr15	87739258	87740986	CD4_Plagnol_resting.35361	0	.	87739258	87740986	0	1	1728	0
chr15	87739269	87742680	prostate_normal.32970	0	.	87739269	87742680	0	1	3411	0
chr15	87739270	87742715	testes_Burge.29439	0	.	87739270	87742715	0	1	3445	0
chr15	87739274	87742680	CD4_Plagnol_activated.36234	0	.	87739274	87742680	0	1	3406	0
chr15	87739276	87740680	REMC_BreastStem.29467	0	.	87739276	87740680	0	1	1404	0
chr15	87739822	87740551	A549_Myers.46157	0	.	87739822	87740551	0	1	729	0
chr15	87740366	87742165	REMC_LuminalBreast.58111	0	.	87740366	87742165	0	1	1799	0
chr15	87740907	87742723	HIT000011324	0	-	87740907	87742723	0	1	1816	0
chr15	87741069	87742704	CD4_Plagnol_resting.35362	0	.	87741069	87742704	0	1	1635	0
chr15	87741884	87742621	REMC_BreastStem.29468	0	.	87741884	87742621	0	1	737	0
chr15	87743852	87744804	B_Cells_Pritchard.1950383	0	.	87743852	87744804	0	1	952	0
chr15	87744291	87765131	B_cells_Cheung.113719	0	+	87744291	87765131	0	3	316,147,1439	0,10498,19401
chr15	87744291	87745867	B_cells_Cheung.113720	0	.	87744291	87745867	0	1	1576	0
chr15	87744370	87744833	A549_Myers.46160	0	.	87744370	87744833	0	1	463	0
chr15	87744397	87754936	Rinn_00024003	0	+	87744397	87754936	0	2	210,148	0,10391
chr15	87744397	87782070	Rinn_00023502	0	+	87744397	87782070	0	3	210,148,189	0,10391,37484
chr15	87748761	87749330	B_cells_Cheung.113725	0	.	87748761	87749330	0	1	569	0
chr15	87753228	87753708	B_cells_Cheung.113728	0	.	87753228	87753708	0	1	480	0
chr15	87753322	87753735	B_Cells_Pritchard.1950413	0	.	87753322	87753735	0	1	413	0
chr15	87755338	87756192	A549_Myers.46161	0	.	87755338	87756192	0	1	854	0
chr15	87755513	87756227	B_cells_Cheung.113729	0	.	87755513	87756227	0	1	714	0
chr15	87760629	87761255	B_Cells_Pritchard.1950449	0	.	87760629	87761255	0	1	626	0
chr15	87762384	87763182	B_Cells_Pritchard.1950453	0	.	87762384	87763182	0	1	798	0
chr15	87765193	87766800	B_cells_Cheung.113735	0	.	87765193	87766800	0	1	1607	0
chr15	87765598	87767108	B_Cells_Pritchard.1950461	0	.	87765598	87767108	0	1	1510	0
chr15	87770497	87771410	B_cells_Cheung.113740	0	.	87770497	87771410	0	1	913	0
chr15	87770772	87771956	B_Cells_Pritchard.1950477	0	.	87770772	87771956	0	1	1184	0
chr15	87774807	87775387	A549_Myers.46164	0	.	87774807	87775387	0	1	580	0
chr15	87774958	87775484	B_cells_Cheung.113744	0	.	87774958	87775484	0	1	526	0
chr15	87777555	87778413	B_Cells_Pritchard.1950493	0	.	87777555	87778413	0	1	858	0
chr15	87779534	87780527	B_Cells_Pritchard.1950501	0	.	87779534	87780527	0	1	993	0
chr15	87780704	87782133	B_Cells_Pritchard.1950503	0	.	87780704	87782133	0	1	1429	0
chr15	87782366	87783597	B_Cells_Pritchard.1950505	0	.	87782366	87783597	0	1	1231	0
chr15	87783801	87784391	B_cells_Cheung.113753	0	.	87783801	87784391	0	1	590	0
chr15	87783845	87784480	B_Cells_Pritchard.1950507	0	.	87783845	87784480	0	1	635	0
chr15	87785356	87787603	B_Cells_Pritchard.1950511	0	.	87785356	87787603	0	1	2247	0
chr15	87785397	87787584	B_cells_Cheung.113755	0	.	87785397	87787584	0	1	2187	0
chr15	87787704	87788399	B_Cells_Pritchard.1950513	0	.	87787704	87788399	0	1	695	0
chr15	87848338	87849064	B_cells_Cheung.113780	0	.	87848338	87849064	0	1	726	0
chr15	87849150	87868269	HIT000095619	0	-	87849150	87868269	0	3	1861,51,454	0,5157,18665
chr15	87849164	87868269	NR_027074	0	-	87849164	87868269	0	3	1847,51,454	0,5143,18651
chr15	87849751	87851074	B_Cells_Pritchard.1950765	0	.	87849751	87851074	0	1	1323	0
chr15	87858822	87868251	HIT000014716	0	+	87858822	87868251	0	3	246,154,436	0,2696,8993
chr15	87898490	87898937	A549_Myers.46218	0	.	87898490	87898937	0	1	447	0
chr15	88007121	88007500	A549_Myers.46229	0	.	88007121	88007500	0	1	379	0
chr15	88088876	88089603	brain_AmbionMAQC.24772	0	.	88088876	88089603	0	1	727	0
chr15	88089189	88089686	A549_Myers.46243	0	.	88089189	88089686	0	1	497	0
chr15	88089969	88091512	brain_AmbionMAQC.24777	0	.	88089969	88091512	0	1	1543	0
chr15	88090026	88090895	ZR751_Thompson.13597	0	.	88090026	88090895	0	1	869	0
chr15	88090052	88090609	HeLa_polyA+_Chen.20475	0	.	88090052	88090609	0	1	557	0
chr15	88090223	88090527	kidney_Raymond.61799	0	.	88090223	88090527	0	1	304	0
chr15	88090261	88091505	B_Cells_Pritchard.1951349	0	-	88090261	88091505	0	2	840,157	0,1087
chr15	88090659	88091534	HeLa_polyA+_Chen.20476	0	.	88090659	88091534	0	1	875	0
chr15	88090685	88091479	MCF7_Burge_Thompson.17044	0	.	88090685	88091479	0	1	794	0
chr15	88103201	88103590	A549_Myers.46250	0	.	88103201	88103590	0	1	389	0
chr15	88110549	88110863	A549_Myers.46252	0	.	88110549	88110863	0	1	314	0
chr15	88125118	88126150	B_Cells_Pritchard.1951425	0	.	88125118	88126150	0	1	1032	0
chr15	88166299	88167043	A549_Myers.46297	0	.	88166299	88167043	0	1	744	0
chr15	88168317	88169704	A549_Myers.46299	0	.	88168317	88169704	0	1	1387	0
chr15	88171186	88171885	H1_polyA+.66160	0	.	88171186	88171885	0	1	699	0
chr15	88171208	88172431	A549_Myers.46300	0	.	88171208	88172431	0	1	1223	0
chr15	88171351	88172070	prostate_carcinoma.56542	0	.	88171351	88172070	0	1	719	0
chr15	88171513	88172715	melanoma_Garraway_short_term_cultures.39184	0	.	88171513	88172715	0	1	1202	0
chr15	88172566	88173258	A549_Myers.46301	0	.	88172566	88173258	0	1	692	0
chr15	88172829	88173594	melanoma_Garraway_short_term_cultures.39185	0	.	88172829	88173594	0	1	765	0
chr15	88342339	88343990	H1_polyA+.66193	0	.	88342339	88343990	0	1	1651	0
chr15	88343301	88343732	A549_Myers.46321	0	.	88343301	88343732	0	1	431	0
chr15	88343443	88343972	B_cells_Cheung.113858	0	.	88343443	88343972	0	1	529	0
chr15	88447518	88451531	REMC_LuminalBreast.58180	0	+	88447518	88451531	0	2	170,3199	0,814
chr15	88448176	88449164	prostate_carcinoma.56830	0	.	88448176	88449164	0	1	988	0
chr15	88464600	88465667	REMC_LuminalBreast.58186	0	.	88464600	88465667	0	1	1067	0
chr15	88472566	88473123	prostate_normal.33015	0	.	88472566	88473123	0	1	557	0
chr15	88480318	88481438	REMC_LuminalBreast.58193	0	.	88480318	88481438	0	1	1120	0
chr15	88502234	88502736	A549_Myers.46344	0	.	88502234	88502736	0	1	502	0
chr15	88504987	88505640	prostate_carcinoma.56967	0	.	88504987	88505640	0	1	653	0
chr15	88618364	88618709	BT20_Thompson.12158	0	.	88618364	88618709	0	1	345	0
chr15	88623228	88623597	B_cells_Cheung.113902	0	.	88623228	88623597	0	1	369	0
chr15	88623255	88623563	IMR90_UCSD_REMC.28893	0	-	88623255	88623563	0	1	308	0
chr15	88623262	88623615	H1_polyA+.66275	0	.	88623262	88623615	0	1	353	0
chr15	88623265	88623604	REMC_MyoepithelialBreast.54298	0	.	88623265	88623604	0	1	339	0
chr15	88623277	88623585	CD4_Plagnol_resting.35412	0	.	88623277	88623585	0	1	308	0
chr15	88628267	88629783	REMC_MyoepithelialBreast.54302	0	.	88628267	88629783	0	1	1516	0
chr15	88628538	88629862	REMC_LuminalBreast.58226	0	.	88628538	88629862	0	1	1324	0
chr15	88629043	88629963	B_Cells_Pritchard.1952553	0	-	88629043	88629963	0	1	920	0
chr15	88629148	88630007	B_cells_Cheung.113908	0	.	88629148	88630007	0	1	859	0
chr15	88629627	88630032	brain_AmbionMAQC.24808	0	.	88629627	88630032	0	1	405	0
chr15	88630475	88630843	B_cells_Cheung.113909	0	.	88630475	88630843	0	1	368	0
chr15	88645054	88645563	B_Cells_Pritchard.1952613	0	.	88645054	88645563	0	1	509	0
chr15	88653776	88654668	H1_polyA+.66287	0	.	88653776	88654668	0	1	892	0
chr15	88707975	88712993	prostate_normal.33019	0	+	88707975	88712993	0	2	51,1609	0,3409
chr15	88707975	88712759	B_Cells_Pritchard.1952811	0	+	88707975	88712759	0	2	93,1333	0,3451
chr15	88708245	88710751	REMC_LuminalBreast.58234	0	.	88708245	88710751	0	1	2506	0
chr15	88708597	88710588	HeLa_polyA+_Chen.20508	0	.	88708597	88710588	0	1	1991	0
chr15	88709391	88710603	B_cells_Cheung.113925	0	.	88709391	88710603	0	1	1212	0
chr15	88709709	88710354	BT474_Burge_Thompson.18709	0	.	88709709	88710354	0	1	645	0
chr15	88710883	88713842	REMC_LuminalBreast.58235	0	.	88710883	88713842	0	1	2959	0
chr15	88710907	88712794	brain_AmbionMAQC.24823	0	.	88710907	88712794	0	1	1887	0
chr15	88710999	88713090	B_cells_Cheung.113926	0	.	88710999	88713090	0	1	2091	0
chr15	88711032	88713382	HIT000047335	0	+	88711032	88713382	0	1	2350	0
chr15	88711222	88712710	BT20_Thompson.12097	0	.	88711222	88712710	0	1	1488	0
chr15	88711259	88712473	REMC_MyoepithelialBreast.54317	0	.	88711259	88712473	0	1	1214	0
chr15	88711329	88712295	K562.25458	0	.	88711329	88712295	0	1	966	0
chr15	88711346	88713092	prostate_carcinoma.56727	0	.	88711346	88713092	0	1	1746	0
chr15	88711392	88712437	HeLa_polyA+_Chen.20509	0	.	88711392	88712437	0	1	1045	0
chr15	88711418	88713003	melanoma_Garraway_short_term_cultures.39258	0	.	88711418	88713003	0	1	1585	0
chr15	88711435	88713003	MIP101.39418	0	.	88711435	88713003	0	1	1568	0
chr15	88720477	88724280	REMC_LuminalBreast.58238	0	.	88720477	88724280	0	1	3803	0
chr15	88720544	88724074	H1_polyA+.66292	0	.	88720544	88724074	0	1	3530	0
chr15	88722361	88723139	prostate_carcinoma.56734	0	.	88722361	88723139	0	1	778	0
chr15	88848225	88848904	B_cells_Cheung.113961	0	.	88848225	88848904	0	1	679	0
chr15	88848482	88848959	B_Cells_Pritchard.1953251	0	-	88848482	88848959	0	1	477	0
chr15	88853856	88855054	REMC_LuminalBreast.58379	0	.	88853856	88855054	0	1	1198	0
chr15	88854510	88854915	B_cells_Cheung.113962	0	.	88854510	88854915	0	1	405	0
chr15	88855827	88858622	REMC_LuminalBreast.58380	0	.	88855827	88858622	0	1	2795	0
chr15	88856570	88858441	REMC_MyoepithelialBreast.54341	0	.	88856570	88858441	0	1	1871	0
chr15	88857452	88858122	REMC_BreastStem.29541	0	.	88857452	88858122	0	1	670	0
chr15	88861127	88867081	REMC_LuminalBreast.58382	0	.	88861127	88867081	0	1	5954	0
chr15	88862644	88865666	REMC_MyoepithelialBreast.54345	0	.	88862644	88865666	0	1	3022	0
chr15	88992351	88993305	B_Cells_Pritchard.1953377	0	.	88992351	88993305	0	1	954	0
chr15	88992362	88993065	melanoma_Garraway_short_term_cultures.39280	0	.	88992362	88993065	0	1	703	0
chr15	88992373	88993965	B_cells_Cheung.114004	0	.	88992373	88993965	0	1	1592	0
chr15	88992569	88993313	REMC_LuminalBreast.58351	0	.	88992569	88993313	0	1	744	0
chr15	88993597	88996178	B_Cells_Pritchard.1953379	0	.	88993597	88996178	0	1	2581	0
chr15	88996436	88998544	B_cells_Cheung.114006	0	.	88996436	88998544	0	1	2108	0
chr15	88996453	88998726	B_Cells_Pritchard.1953381	0	.	88996453	88998726	0	1	2273	0
chr15	88998596	88999607	B_cells_Cheung.114007	0	.	88998596	88999607	0	1	1011	0
chr15	89003223	89012231	B_Cells_Pritchard.1953407	0	+	89003223	89012231	0	5	449,1590,171,1691,1302	0,478,2404,5194,7706
chr15	89003770	89004494	H1_polyA+.66310	0	.	89003770	89004494	0	1	724	0
chr15	89007637	89009563	REMC_LuminalBreast.58354	0	.	89007637	89009563	0	1	1926	0
chr15	89008417	89016926	B_Cells_Pritchard.1953409	0	-	89008417	89016926	0	4	722,1136,598,1165	0,728,1889,7344
chr15	89009172	89009686	MIP101.39387	0	.	89009172	89009686	0	1	514	0
chr15	89009212	89010044	A549_Myers.46413	0	.	89009212	89010044	0	1	832	0
chr15	89009234	89009667	prostate_carcinoma.56779	0	.	89009234	89009667	0	1	433	0
chr15	89010924	89011570	H1_polyA+.66312	0	.	89010924	89011570	0	1	646	0
chr15	89011025	89011335	BT474_Burge_Thompson.18714	0	.	89011025	89011335	0	1	310	0
chr15	89014462	89015156	B_cells_Cheung.114014	0	.	89014462	89015156	0	1	694	0
chr15	89015281	89018021	B_cells_Cheung.114015	0	.	89015281	89018021	0	1	2740	0
chr15	89015485	89017331	H1_polyA+.66315	0	.	89015485	89017331	0	1	1846	0
chr15	89024008	89029522	B_cells_Cheung.114018	0	.	89024008	89029522	0	1	5514	0
chr15	89024040	89026101	B_Cells_Pritchard.1953447	0	+	89024040	89026101	0	1	2061	0
chr15	89026332	89027058	prostate_carcinoma.56784	0	.	89026332	89027058	0	1	726	0
chr15	89035648	89052290	B_cells_Cheung.114023	0	+	89035648	89052290	0	2	927,8081	0,8561
chr15	89038595	89040646	H1_polyA+.66326	0	.	89038595	89040646	0	1	2051	0
chr15	89041363	89042395	H1_polyA+.66327	0	.	89041363	89042395	0	1	1032	0
chr15	89041931	89042566	B_cells_Cheung.114030	0	.	89041931	89042566	0	1	635	0
chr15	89044100	89046029	H1_polyA+.66329	0	.	89044100	89046029	0	1	1929	0
chr15	89051677	89056483	H1_polyA+.66333	0	.	89051677	89056483	0	1	4806	0
chr15	89053314	89056481	B_Cells_Pritchard.1953559	0	+	89053314	89056481	0	1	3167	0
chr15	89054322	89056480	MIP101.39399	0	.	89054322	89056480	0	1	2158	0
chr15	89054328	89056062	prostate_carcinoma.56792	0	.	89054328	89056062	0	1	1734	0
chr15	89056593	89058066	H1_polyA+.66334	0	.	89056593	89058066	0	1	1473	0
chr15	89056984	89058082	B_Cells_Pritchard.1953565	0	.	89056984	89058082	0	1	1098	0
chr15	89058690	89059840	B_cells_Cheung.114032	0	.	89058690	89059840	0	1	1150	0
chr15	89164591	89165303	B_Cells_Pritchard.1953775	0	+	89164591	89165303	0	1	712	0
chr15	89169178	89169583	A549_Myers.46447	0	.	89169178	89169583	0	1	405	0
chr15	89183609	89185545	B_Cells_Pritchard.1953857	0	+	89183609	89185545	0	2	525,158	0,1778
chr15	89183888	89188833	B_cells_Cheung.114085	0	+	89183888	89188833	0	3	246,131,1207	0,1499,3738
chr15	89186711	89188833	B_cells_Cheung.114084	0	.	89186711	89188833	0	1	2122	0
chr15	89188274	89189162	prostate_carcinoma.57806	0	-	89188274	89189162	0	2	387,95	0,793
chr15	89188288	89188602	prostate_normal.33653	0	.	89188288	89188602	0	1	314	0
chr15	89193351	89194471	B_cells_Cheung.114092	0	.	89193351	89194471	0	1	1120	0
chr15	89193864	89194413	prostate_carcinoma.57815	0	.	89193864	89194413	0	1	549	0
chr15	89194599	89195844	B_cells_Cheung.114093	0	.	89194599	89195844	0	1	1245	0
chr15	89195915	89197497	B_cells_Cheung.114095	0	.	89195915	89197497	0	1	1582	0
chr15	89196078	89197459	prostate_carcinoma.57818	0	.	89196078	89197459	0	2	944,374	0,1007
chr15	89196086	89197455	prostate_normal.33662	0	.	89196086	89197455	0	1	1369	0
chr15	89196191	89197456	B_Cells_Pritchard.1953877	0	-	89196191	89197456	0	1	1265	0
chr15	89198489	89199832	B_cells_Cheung.114098	0	.	89198489	89199832	0	1	1343	0
chr15	89198507	89199867	prostate_carcinoma.57819	0	.	89198507	89199867	0	1	1360	0
chr15	89198510	89199881	B_Cells_Pritchard.1953883	0	-	89198510	89199881	0	1	1371	0
chr15	89198521	89199836	prostate_normal.33650	0	.	89198521	89199836	0	1	1315	0
chr15	89199327	89199840	A549_Myers.46449	0	.	89199327	89199840	0	1	513	0
chr15	89200774	89202647	prostate_carcinoma.57821	0	.	89200774	89202647	0	1	1873	0
chr15	89201551	89202652	prostate_normal.33667	0	.	89201551	89202652	0	1	1101	0
chr15	89201564	89202677	B_cells_Cheung.114094	0	.	89201564	89202677	0	1	1113	0
chr15	89203470	89203988	B_cells_Cheung.114102	0	.	89203470	89203988	0	1	518	0
chr15	89203604	89204347	prostate_normal.33668	0	.	89203604	89204347	0	1	743	0
chr15	89209858	89210628	B_Cells_Pritchard.1953907	0	+	89209858	89210628	0	1	770	0
chr15	89209874	89211174	B_cells_Cheung.114107	0	.	89209874	89211174	0	1	1300	0
chr15	89245199	89246786	REMC_LuminalBreast.58360	0	.	89245199	89246786	0	1	1587	0
chr15	89340341	89340790	K562.25505	0	.	89340341	89340790	0	1	449	0
chr15	89648517	89649041	B_cells_Cheung.114242	0	.	89648517	89649041	0	1	524	0
chr15	89956316	89981312	Rinn_00023507	0	+	89956316	89981312	0	3	30,78,281	0,23824,24715
chr15	89979896	89981312	Rinn_00024008	0	+	89979896	89981312	0	2	322,281	0,1135
chr15	90178614	90179084	A549_Myers.46485	0	.	90178614	90179084	0	1	470	0
chr15	90195982	90196888	prostate_carcinoma.56842	0	.	90195982	90196888	0	1	906	0
chr15	90531733	90534438	REMC_LuminalBreast.58439	0	.	90531733	90534438	0	1	2705	0
chr15	90531829	90544217	REMC_MyoepithelialBreast.54597	0	.	90531829	90544217	0	1	12388	0
chr15	90534565	90542592	REMC_LuminalBreast.58440	0	.	90534565	90542592	0	1	8027	0
chr15	90544912	90550895	REMC_MyoepithelialBreast.54598	0	.	90544912	90550895	0	1	5983	0
chr15	90546024	90548297	REMC_LuminalBreast.58387	0	.	90546024	90548297	0	1	2273	0
chr15	90733894	90735306	H1_polyA+.66445	0	.	90733894	90735306	0	1	1412	0
chr15	90912057	90929485	prostate_carcinoma.56865	0	-	90912057	90929485	0	4	468,71,10823,2445	0,2379,2734,14983
chr15	90912073	90926013	prostate_normal.33141	0	-	90912073	90926013	0	3	452,71,11222	0,2363,2718
chr15	90912088	90928868	Rinn_00023788	0	-	90912088	90928868	0	4	437,72,140,13435	0,2347,2702,3345
chr15	90914651	90926042	prostate_carcinoma.56867	0	+	90914651	90926042	0	3	1025,6953,1833	0,1262,9558
chr15	90915126	90915735	BT20_Thompson.12126	0	.	90915126	90915735	0	1	609	0
chr15	90915297	90922871	REMC_LuminalBreast.58392	0	.	90915297	90922871	0	1	7574	0
chr15	90915899	90922148	BT20_Thompson.12127	0	.	90915899	90922148	0	1	6249	0
chr15	90918909	90919211	testes_Burge.29626	0	.	90918909	90919211	0	1	302	0
chr15	90918960	90920043	BT474_Burge_Thompson.18741	0	.	90918960	90920043	0	1	1083	0
chr15	90920012	90921560	REMC_BreastStem.29581	0	.	90920012	90921560	0	1	1548	0
chr15	90920776	90921504	testes_Burge.29629	0	.	90920776	90921504	0	1	728	0
chr15	90922268	90924379	BT20_Thompson.12128	0	.	90922268	90924379	0	1	2111	0
chr15	90922332	90923718	testes_Burge.29630	0	.	90922332	90923718	0	1	1386	0
chr15	90922555	90924378	BT474_Burge_Thompson.18742	0	.	90922555	90924378	0	1	1823	0
chr15	90923852	90924897	testes_Burge.29622	0	.	90923852	90924897	0	1	1045	0
chr15	90928215	90929891	REMC_LuminalBreast.58395	0	.	90928215	90929891	0	1	1676	0
chr15	90930435	90931331	REMC_MyoepithelialBreast.54457	0	.	90930435	90931331	0	1	896	0
chr15	90931582	90932329	prostate_carcinoma.56869	0	.	90931582	90932329	0	1	747	0
chr15	90932385	90933229	prostate_carcinoma.56870	0	.	90932385	90933229	0	1	844	0
chr15	90933772	90934845	BT20_Thompson.12131	0	.	90933772	90934845	0	1	1073	0
chr15	90934146	90934892	prostate_carcinoma.56871	0	.	90934146	90934892	0	1	746	0
chr15	90936811	90944566	prostate_normal.33144	0	.	90936811	90944566	0	1	7755	0
chr15	90936812	90940376	HIT000021635	0	-	90936812	90940376	0	1	3564	0
chr15	90936839	90945513	prostate_carcinoma.56866	0	.	90936839	90945513	0	1	8674	0
chr15	90938352	90940937	Rinn_00023790	0	-	90938352	90940937	0	2	134,1020	0,1565
chr15	90939059	90951167	BT20_Thompson.12134	0	.	90939059	90951167	0	1	12108	0
chr15	90939706	90946692	REMC_LuminalBreast.58399	0	.	90939706	90946692	0	1	6986	0
chr15	90939894	90941194	B_cells_Cheung.114253	0	.	90939894	90941194	0	1	1300	0
chr15	90939921	90941004	REMC_MyoepithelialBreast.54459	0	.	90939921	90941004	0	1	1083	0
chr15	90939973	90940791	MIP101.39437	0	.	90939973	90940791	0	1	818	0
chr15	90940100	90945390	B_Cells_Pritchard.1958195	0	.	90940100	90945390	0	1	5290	0
chr15	90942614	90943468	B_cells_Cheung.114254	0	.	90942614	90943468	0	1	854	0
chr15	90942688	90943569	BT474_Burge_Thompson.18749	0	.	90942688	90943569	0	1	881	0
chr15	90942791	90944771	HIT000022566	0	+	90942791	90944771	0	1	1980	0
chr15	90943289	90943953	REMC_MyoepithelialBreast.54461	0	.	90943289	90943953	0	1	664	0
chr15	90946991	90947466	prostate_carcinoma.56872	0	.	90946991	90947466	0	1	475	0
chr15	90949539	90950202	B_Cells_Pritchard.1958217	0	.	90949539	90950202	0	1	663	0
chr15	90949582	90950146	B_cells_Cheung.114255	0	.	90949582	90950146	0	1	564	0
chr15	90949690	90951189	REMC_LuminalBreast.58401	0	.	90949690	90951189	0	1	1499	0
chr15	90951908	90955374	BT20_Thompson.12135	0	.	90951908	90955374	0	1	3466	0
chr15	90953026	90954088	REMC_LuminalBreast.58402	0	.	90953026	90954088	0	1	1062	0
chr15	91089434	91090752	REMC_LuminalBreast.58421	0	.	91089434	91090752	0	1	1318	0
chr15	91091295	91092666	REMC_LuminalBreast.58422	0	.	91091295	91092666	0	1	1371	0
chr15	91109589	91110825	REMC_LuminalBreast.58425	0	.	91109589	91110825	0	1	1236	0
chr15	91113577	91114854	REMC_LuminalBreast.58426	0	.	91113577	91114854	0	1	1277	0
chr15	91128142	91128588	REMC_LuminalBreast.58431	0	.	91128142	91128588	0	1	446	0
chr15	91128212	91129088	H1_polyA+.66475	0	.	91128212	91129088	0	1	876	0
chr15	91135966	91136592	prostate_normal.33181	0	.	91135966	91136592	0	1	626	0
chr15	91138071	91139645	B_cells_Cheung.114284	0	.	91138071	91139645	0	1	1574	0
chr15	91141756	91142115	B_cells_Cheung.114287	0	.	91141756	91142115	0	1	359	0
chr15	91143166	91151831	B_Cells_Pritchard.1958723	0	+	91143166	91151831	0	10	133,20,309,162,204,219,323,26,31,71	0,136,3391,4570,4787,5047,5269,6656,7290,8594
chr15	91144159	91145612	B_cells_Cheung.114291	0	.	91144159	91145612	0	1	1453	0
chr15	91145756	91146369	kidney_Gilad.50570	0	.	91145756	91146369	0	1	613	0
chr15	91145778	91146365	prostate_normal.33184	0	.	91145778	91146365	0	1	587	0
chr15	91147769	91154159	prostate_normal.33186	0	-	91147769	91154159	0	2	158,336	0,6054
chr15	91149202	91160037	REMC_LuminalBreast.58434	0	.	91149202	91160037	0	1	10835	0
chr15	91151054	91154097	HeLa_polyA+_Chen.20587	0	.	91151054	91154097	0	1	3043	0
chr15	91151534	91151858	B_cells_Cheung.114298	0	.	91151534	91151858	0	1	324	0
chr15	91152030	91154159	prostate_normal.33187	0	.	91152030	91154159	0	1	2129	0
chr15	91153013	91153704	MIP101.39458	0	.	91153013	91153704	0	1	691	0
chr15	91153321	91154251	MCF7_Burge_Thompson.17122	0	.	91153321	91154251	0	1	930	0
chr15	91153395	91154214	prostate_carcinoma.56925	0	.	91153395	91154214	0	1	819	0
chr15	91163268	91164591	REMC_MyoepithelialBreast.54486	0	.	91163268	91164591	0	1	1323	0
chr15	91163438	91164666	B_Cells_Pritchard.1958801	0	.	91163438	91164666	0	1	1228	0
chr15	91163508	91164538	REMC_LuminalBreast.58435	0	.	91163508	91164538	0	1	1030	0
chr15	91166279	91177394	B_Cells_Pritchard.1958833	0	-	91166279	91177394	0	2	65,240	0,10875
chr15	91176201	91177468	REMC_MyoepithelialBreast.54488	0	.	91176201	91177468	0	1	1267	0
chr15	91214344	91214738	T47D_Burge_Thompson.16195	0	.	91214344	91214738	0	1	394	0
chr15	91221986	91223480	T47D_Burge_Thompson.16196	0	.	91221986	91223480	0	1	1494	0
chr15	91226870	91227414	skeletal_muscle_Burge.16485	0	.	91226870	91227414	0	1	544	0
chr15	91226879	91227453	testes_Burge.29644	0	.	91226879	91227453	0	1	574	0
chr15	91226893	91227491	lymph_node_Burge.27328	0	.	91226893	91227491	0	1	598	0
chr15	91226918	91227491	colon_Burge.21089	0	.	91226918	91227491	0	1	573	0
chr15	91226921	91227475	adipose_Burge.21634	0	.	91226921	91227475	0	1	554	0
chr15	91226931	91227473	breast_Burge.22203	0	.	91226931	91227473	0	1	542	0
chr15	91227020	91227425	NEC_from_H9.42814	0	.	91227020	91227425	0	1	405	0
chr15	91227020	91227343	kidney_Gilad.50573	0	.	91227020	91227343	0	1	323	0
chr15	91227042	91227418	HeLa_Bartel_miR-155_32hr.10270	0	.	91227042	91227418	0	1	376	0
chr15	91374427	91375570	A549_Myers.46585	0	.	91374427	91375570	0	1	1143	0
chr15	91383984	91386052	H1_polyA+.66538	0	.	91383984	91386052	0	1	2068	0
chr15	91384009	91385319	REMC_LuminalBreast.58445	0	.	91384009	91385319	0	1	1310	0
chr15	91384035	91386041	K562.25529	0	.	91384035	91386041	0	1	2006	0
chr15	91385206	91386181	HepG2_Caltech_ENCODE.20670	0	.	91385206	91386181	0	1	975	0
chr15	91496427	91496797	A549_Myers.46622	0	.	91496427	91496797	0	1	370	0
chr15	91550297	91552281	XR_041833	0	+	91550297	91552281	0	2	1718,266	0,1718
chr15	91550297	91552281	XR_041834	0	+	91550297	91552281	0	1	1984	0
chr15	91550298	91552281	HIT000252298	0	+	91550298	91552281	0	1	1983	0
chr15	91587085	91587667	H1_polyA+.66549	0	.	91587085	91587667	0	1	582	0
chr15	91587768	91588240	H1_polyA+.66550	0	.	91587768	91588240	0	1	472	0
chr15	91590126	91591232	H1_polyA+.66551	0	.	91590126	91591232	0	1	1106	0
chr15	92178963	92180125	melanoma_Garraway_short_term_cultures.39381	0	.	92178963	92180125	0	1	1162	0
chr15	92244266	92244825	melanoma_Garraway_short_term_cultures.39393	0	-	92244266	92244825	0	2	102,242	0,317
chr15	92377943	92378594	MIP101.39471	0	+	92377943	92378594	0	2	207,211	0,440
chr15	92377977	92378475	melanoma_Garraway_short_term_cultures.39394	0	.	92377977	92378475	0	1	498	0
chr15	92377981	92378501	MeWo_Garraway.20483	0	.	92377981	92378501	0	1	520	0
chr15	92378004	92378922	B_Cells_Pritchard.1961591	0	.	92378004	92378922	0	1	918	0
chr15	92378018	92378539	H1_polyA+.66557	0	.	92378018	92378539	0	1	521	0
chr15	92378028	92378494	K562.25532	0	.	92378028	92378494	0	1	466	0
chr15	92378056	92378746	MeI_Garraway.10127	0	.	92378056	92378746	0	1	690	0
chr15	92395398	92396486	B_Cells_Pritchard.1961631	0	-	92395398	92396486	0	2	382,206	0,882
chr15	92395605	92396489	BT474_Burge_Thompson.18766	0	.	92395605	92396489	0	1	884	0
chr15	92395782	92396241	B_Cells_Pritchard.1961633	0	-	92395782	92396241	0	1	459	0
chr15	92395792	92396182	ZR751_Thompson.13649	0	.	92395792	92396182	0	1	390	0
chr15	92829696	92830980	REMC_LuminalBreast.58485	0	.	92829696	92830980	0	1	1284	0
chr15	92923537	92989762	pHIT000114812	0	-	92923537	92989762	0	4	115,52,138,88	0,26795,40981,66137
chr15	92927786	92929220	Rinn_00023797	0	-	92927786	92929220	0	3	492,70,24	0,1199,1410
chr15	93216672	93217515	K562.25540	0	.	93216672	93217515	0	1	843	0
chr15	93237428	93238415	K562.25544	0	.	93237428	93238415	0	1	987	0
chr15	93254450	93255572	K562.25548	0	.	93254450	93255572	0	1	1122	0
chr15	93264302	93264746	K562.25552	0	.	93264302	93264746	0	1	444	0
chr15	93308943	93310384	K562.25556	0	.	93308943	93310384	0	1	1441	0
chr15	93374071	93377649	H1_polyA+.66576	0	.	93374071	93377649	0	1	3578	0
chr15	93377822	93380161	H1_polyA+.66577	0	-	93377822	93380161	0	2	1155,545	0,1794
chr15	93378520	93379879	H9_polyA+.25660	0	-	93378520	93379879	0	2	457,263	0,1096
chr15	93461020	93461729	K562.25565	0	.	93461020	93461729	0	1	709	0
chr15	93623455	93671333	HIT000096415	0	-	93623455	93671333	0	4	874,167,133,271	0,9079,10199,47607
chr15	93623522	93671333	NR_034095	0	-	93623522	93671333	0	4	807,167,133,271	0,9012,10132,47540
chr15	93623524	93671333	ENST00000508732	0	-	93623524	93671333	0	4	805,167,133,271	0,9010,10130,47538
chr15	93671062	93671499	testes_Burge.29681	0	.	93671062	93671499	0	1	437	0
chr15	93755037	93755406	B_cells_Cheung.114414	0	.	93755037	93755406	0	1	369	0
chr15	93760244	93760625	ovary_Raymond.155979	0	.	93760244	93760625	0	1	381	0
chr15	93886314	93980925	pHIT000025730	0	-	93886314	93980925	0	8	43,133,120,123,50,60,82,13	0,3532,22216,49967,68737,75542,75936,94598
chr15	93912607	93913907	K562.25585	0	.	93912607	93913907	0	1	1300	0
chr15	93987166	93990392	K562.25592	0	.	93987166	93990392	0	1	3226	0
chr15	94060309	94063897	K562.25612	0	.	94060309	94063897	0	1	3588	0
chr15	94184044	94184429	B_cells_Cheung.114422	0	.	94184044	94184429	0	1	385	0
chr15	94190993	94191713	B_Cells_Pritchard.1965315	0	.	94190993	94191713	0	1	720	0
chr15	94245213	94247585	B_cells_Cheung.114448	0	.	94245213	94247585	0	1	2372	0
chr15	94247655	94250546	B_cells_Cheung.114449	0	.	94247655	94250546	0	1	2891	0
chr15	94255845	94256494	B_Cells_Pritchard.1965435	0	.	94255845	94256494	0	1	649	0
chr15	94277866	94280106	B_cells_Cheung.114475	0	.	94277866	94280106	0	1	2240	0
chr15	94277955	94278351	B_Cells_Pritchard.1965531	0	.	94277955	94278351	0	1	396	0
chr15	94284158	94287854	B_cells_Cheung.114480	0	.	94284158	94287854	0	1	3696	0
chr15	94284605	94285362	B_Cells_Pritchard.1965567	0	.	94284605	94285362	0	1	757	0
chr15	94302069	94303252	B_cells_Cheung.114498	0	.	94302069	94303252	0	1	1183	0
chr15	94315359	94318859	B_cells_Cheung.114510	0	.	94315359	94318859	0	1	3500	0
chr15	94315773	94317197	B_Cells_Pritchard.1965701	0	.	94315773	94317197	0	1	1424	0
chr15	94333907	94339920	B_cells_Cheung.114526	0	.	94333907	94339920	0	1	6013	0
chr15	94334665	94335462	B_Cells_Pritchard.1965787	0	.	94334665	94335462	0	1	797	0
chr15	94350122	94350600	B_cells_Cheung.114531	0	.	94350122	94350600	0	1	478	0
chr15	94352921	94354242	B_cells_Cheung.114534	0	.	94352921	94354242	0	1	1321	0
chr15	94357364	94358161	B_cells_Cheung.114537	0	.	94357364	94358161	0	1	797	0
chr15	94390618	94391294	B_cells_Cheung.114557	0	.	94390618	94391294	0	1	676	0
chr15	94392735	94394038	B_cells_Cheung.114558	0	.	94392735	94394038	0	1	1303	0
chr15	94392766	94393949	B_Cells_Pritchard.1965985	0	.	94392766	94393949	0	1	1183	0
chr15	94429303	94430700	B_cells_Cheung.114587	0	.	94429303	94430700	0	1	1397	0
chr15	94433859	94434288	B_cells_Cheung.114590	0	.	94433859	94434288	0	1	429	0
chr15	94457914	94459293	prostate_carcinoma.57027	0	.	94457914	94459293	0	1	1379	0
chr15	94458245	94459424	B_cells_Cheung.114601	0	.	94458245	94459424	0	1	1179	0
chr15	94458310	94460284	HIT000011314	0	+	94458310	94460284	0	1	1974	0
chr15	94463621	94465780	HIT000047795	0	+	94463621	94465780	0	1	2159	0
chr15	94463797	94465537	B_cells_Cheung.114607	0	.	94463797	94465537	0	1	1740	0
chr15	94484887	94486122	HepG2_Caltech_ENCODE.20686	0	.	94484887	94486122	0	1	1235	0
chr15	94484984	94486337	B_cells_Cheung.114623	0	.	94484984	94486337	0	1	1353	0
chr15	94484988	94487420	prostate_carcinoma.57039	0	.	94484988	94487420	0	1	2432	0
chr15	94485019	94486611	melanoma_Garraway_short_term_cultures.39427	0	.	94485019	94486611	0	1	1592	0
chr15	94485448	94486428	prostate_normal.33219	0	.	94485448	94486428	0	1	980	0
chr15	94487560	94488739	prostate_carcinoma.57040	0	.	94487560	94488739	0	1	1179	0
chr15	94487853	94488601	prostate_normal.33220	0	.	94487853	94488601	0	1	748	0
chr15	94487876	94488472	HepG2_Caltech_ENCODE.20688	0	.	94487876	94488472	0	1	596	0
chr15	94487950	94488690	melanoma_Garraway_short_term_cultures.39428	0	.	94487950	94488690	0	1	740	0
chr15	94496896	94497663	B_cells_Cheung.114636	0	.	94496896	94497663	0	1	767	0
chr15	94496908	94497987	HepG2_Caltech_ENCODE.20695	0	.	94496908	94497987	0	1	1079	0
chr15	94496908	94497550	prostate_carcinoma.57045	0	.	94496908	94497550	0	1	642	0
chr15	94506507	94506929	ovary_Raymond.156228	0	.	94506507	94506929	0	1	422	0
chr15	94517098	94519330	B_cells_Cheung.114653	0	.	94517098	94519330	0	1	2232	0
chr15	94517177	94537311	liver_polyA+.78982	0	+	94517177	94537311	0	2	1003,60	0,20074
chr15	94517177	94518654	liver_polyA+.78981	0	.	94517177	94518654	0	1	1477	0
chr15	94522449	94523531	melanoma_Garraway_short_term_cultures.39437	0	.	94522449	94523531	0	1	1082	0
chr15	94522464	94523323	liver_polyA+.78984	0	.	94522464	94523323	0	1	859	0
chr15	94522471	94524010	B_cells_Cheung.114659	0	.	94522471	94524010	0	1	1539	0
chr15	94522661	94523186	kidney_Gilad.50666	0	.	94522661	94523186	0	1	525	0
chr15	94522746	94523226	prostate_carcinoma.57050	0	.	94522746	94523226	0	1	480	0
chr15	94522763	94523075	breast_Burge.22251	0	.	94522763	94523075	0	1	312	0
chr15	94522773	94523116	kidney_Raymond.62178	0	.	94522773	94523116	0	1	343	0
chr15	94534380	94535195	prostate_carcinoma.57051	0	.	94534380	94535195	0	1	815	0
chr15	94534384	94535269	B_cells_Cheung.114670	0	.	94534384	94535269	0	1	885	0
chr15	94534385	94534931	liver_polyA+.78988	0	.	94534385	94534931	0	1	546	0
chr15	94534585	94535009	IMR90_UCSD_REMC.29031	0	+	94534585	94535009	0	1	424	0
chr15	94536703	94538331	B_cells_Cheung.114671	0	.	94536703	94538331	0	1	1628	0
chr15	94539577	94540591	kidney_Gilad.50669	0	+	94539577	94540591	0	2	392,86	0,928
chr15	94539577	94540591	liver_polyA+.78991	0	+	94539577	94540591	0	2	392,86	0,928
chr15	94542915	94543932	B_cells_Cheung.114676	0	.	94542915	94543932	0	1	1017	0
chr15	94544295	94545624	prostate_carcinoma.57052	0	.	94544295	94545624	0	1	1329	0
chr15	94544575	94545663	B_cells_Cheung.114677	0	.	94544575	94545663	0	1	1088	0
chr15	94544583	94545620	B_Cells_Pritchard.1966567	0	.	94544583	94545620	0	1	1037	0
chr15	94545073	94547687	ovary_Raymond.156336	0	+	94545073	94547687	0	2	508,449	0,2165
chr15	94554755	94556856	HIT000004809	0	+	94554755	94556856	0	1	2101	0
chr15	94556121	94556506	ovary_Raymond.156347	0	.	94556121	94556506	0	1	385	0
chr15	94556150	94556670	B_cells_Cheung.114683	0	.	94556150	94556670	0	1	520	0
chr15	94577161	94578259	K562.25640	0	.	94577161	94578259	0	1	1098	0
chr15	94580272	94582217	melanoma_Garraway_short_term_cultures.39446	0	.	94580272	94582217	0	1	1945	0
chr15	94580281	94582421	B_cells_Cheung.114694	0	.	94580281	94582421	0	1	2140	0
chr15	94581049	94581986	REMC_LuminalBreast.58495	0	.	94581049	94581986	0	1	937	0
chr15	94582498	94585741	melanoma_Garraway_short_term_cultures.39447	0	.	94582498	94585741	0	1	3243	0
chr15	94583098	94585152	prostate_carcinoma.57273	0	.	94583098	94585152	0	1	2054	0
chr15	94583230	94591374	B_cells_Cheung.114696	0	.	94583230	94591374	0	1	8144	0
chr15	94583498	94585856	B_Cells_Pritchard.1966711	0	.	94583498	94585856	0	1	2358	0
chr15	94586593	94590977	melanoma_Garraway_short_term_cultures.39448	0	.	94586593	94590977	0	1	4384	0
chr15	94586660	94587591	prostate_carcinoma.57274	0	.	94586660	94587591	0	1	931	0
chr15	94587978	94589259	kidney_Gilad.50676	0	.	94587978	94589259	0	1	1281	0
chr15	94588352	94589167	REMC_LuminalBreast.58497	0	.	94588352	94589167	0	1	815	0
chr15	94601394	94603648	B_cells_Cheung.114704	0	.	94601394	94603648	0	1	2254	0
chr15	94602687	94604211	melanoma_Garraway_short_term_cultures.39453	0	.	94602687	94604211	0	1	1524	0
chr15	94611230	94613893	prostate_carcinoma.57279	0	.	94611230	94613893	0	1	2663	0
chr15	94612305	94614335	melanoma_Garraway_short_term_cultures.39457	0	.	94612305	94614335	0	1	2030	0
chr15	94612483	94616291	B_Cells_Pritchard.1966837	0	+	94612483	94616291	0	2	1927,594	0,3214
chr15	94613095	94613935	prostate_normal.33226	0	.	94613095	94613935	0	1	840	0
chr15	94613479	94613791	liver_polyA+.79006	0	.	94613479	94613791	0	1	312	0
chr15	94616625	94617488	melanoma_Garraway_short_term_cultures.39460	0	.	94616625	94617488	0	1	863	0
chr15	94618960	94624961	B_cells_Cheung.114709	0	.	94618960	94624961	0	1	6001	0
chr15	94621557	94623089	B_Cells_Pritchard.1966873	0	+	94621557	94623089	0	2	710,60	0,1472
chr15	94629569	94629930	liver_polyA+.79008	0	.	94629569	94629930	0	1	361	0
chr15	94639167	94642256	HIT000047065	0	-	94639167	94642256	0	1	3089	0
chr15	94660797	94667131	MIP101.39793	0	.	94660797	94667131	0	1	6334	0
chr15	94663602	94667868	B_Cells_Pritchard.1967023	0	.	94663602	94667868	0	1	4266	0
chr15	94666236	94666609	A549_Myers.46641	0	.	94666236	94666609	0	1	373	0
chr15	94685781	94686176	A549_Myers.46656	0	.	94685781	94686176	0	1	395	0
chr15	94687013	94689789	B_Cells_Pritchard.1967081	0	.	94687013	94689789	0	1	2776	0
chr15	94687017	94693748	T47D_Burge_Thompson.16210	0	.	94687017	94693748	0	1	6731	0
chr15	94687123	94688830	BT20_Thompson.12169	0	.	94687123	94688830	0	1	1707	0
chr15	94687132	94688717	prostate_normal.33249	0	.	94687132	94688717	0	1	1585	0
chr15	94687398	94687800	spleen_Raymond.120667	0	.	94687398	94687800	0	1	402	0
chr15	94687432	94690096	REMC_LuminalBreast.58504	0	.	94687432	94690096	0	1	2664	0
chr15	94687488	94688252	MCF7_Burge_Thompson.17215	0	.	94687488	94688252	0	1	764	0
chr15	94687972	94732778	pHIT000114821	0	-	94687972	94732778	0	3	401,213,346	0,2071,44460
chr15	94689100	94690599	BT20_Thompson.12151	0	.	94689100	94690599	0	1	1499	0
chr15	94689890	94691126	B_Cells_Pritchard.1967083	0	.	94689890	94691126	0	1	1236	0
chr15	94689963	94690656	A549_Myers.46658	0	.	94689963	94690656	0	1	693	0
chr15	94689984	94690405	MCF7_Burge_Thompson.17217	0	.	94689984	94690405	0	1	421	0
chr15	94690158	94691565	REMC_LuminalBreast.58505	0	.	94690158	94691565	0	1	1407	0
chr15	94690292	94695386	prostate_carcinoma.57286	0	.	94690292	94695386	0	1	5094	0
chr15	94691277	94693937	MCF7_Burge_Thompson.17218	0	.	94691277	94693937	0	1	2660	0
chr15	94692603	94693520	B_Cells_Pritchard.1967089	0	.	94692603	94693520	0	1	917	0
chr15	94692850	94693511	REMC_LuminalBreast.58506	0	.	94692850	94693511	0	1	661	0
chr15	94695505	94696491	B_cells_Cheung.114730	0	.	94695505	94696491	0	1	986	0
chr15	94695507	94697596	prostate_carcinoma.57287	0	.	94695507	94697596	0	1	2089	0
chr15	94695878	94696313	prostate_normal.33241	0	.	94695878	94696313	0	1	435	0
chr15	94695938	94697168	T47D_Burge_Thompson.16212	0	.	94695938	94697168	0	1	1230	0
chr15	94696287	94696987	A549_Myers.46644	0	.	94696287	94696987	0	1	700	0
chr15	94698512	94699077	A549_Myers.46646	0	.	94698512	94699077	0	1	565	0
chr15	94703895	94708475	HIT000015347	0	-	94703895	94708475	0	2	842,3638	0,942
chr15	94705284	94707789	B_cells_Cheung.114737	0	.	94705284	94707789	0	1	2505	0
chr15	94707072	94708669	MIP101.39799	0	.	94707072	94708669	0	1	1597	0
chr15	94710394	94713180	MIP101.39800	0	.	94710394	94713180	0	1	2786	0
chr15	94712415	94714288	B_cells_Cheung.114738	0	.	94712415	94714288	0	2	850,714	0,1159
chr15	94718114	94718942	B_cells_Cheung.114739	0	.	94718114	94718942	0	1	828	0
chr15	94732589	94761701	pHIT000114819	0	+	94732589	94761701	0	4	226,178,70,660	0,1927,27910,28452
chr15	94734971	94735786	prostate_normal.33244	0	.	94734971	94735786	0	1	815	0
chr15	94837939	94838947	H1_polyA+.66588	0	.	94837939	94838947	0	1	1008	0
chr15	95105756	95111151	HIT000026046	0	-	95105756	95111151	0	1	5395	0
chr15	95784151	95795620	H1_polyA+.66612	0	.	95784151	95795620	0	1	11469	0
chr15	95787884	95795271	MIP101.39559	0	.	95787884	95795271	0	1	7387	0
chr15	95793121	95794493	H9_polyA+.25680	0	.	95793121	95794493	0	1	1372	0
chr15	96009334	96010705	REMC_LuminalBreast.58512	0	.	96009334	96010705	0	1	1371	0
chr15	96035389	96037660	prostate_carcinoma.57096	0	.	96035389	96037660	0	1	2271	0
chr15	96037062	96037678	K562.25694	0	.	96037062	96037678	0	1	616	0
chr15	96038782	96039167	prostate_normal.33257	0	.	96038782	96039167	0	1	385	0
chr15	96100543	96101760	K562.25701	0	.	96100543	96101760	0	1	1217	0
chr15	96133259	96133755	K562.25703	0	.	96133259	96133755	0	1	496	0
chr15	96220526	96222634	HIT000095606	0	+	96220526	96222634	0	1	2108	0
chr15	96319112	96325226	REMC_LuminalBreast.58527	0	.	96319112	96325226	0	1	6114	0
chr15	96322597	96325093	prostate_carcinoma.57108	0	.	96322597	96325093	0	1	2496	0
chr15	96322635	96325113	prostate_normal.33263	0	.	96322635	96325113	0	3	336,1169,893	0,416,1585
chr15	96329738	96340881	REMC_LuminalBreast.58528	0	-	96329738	96340881	0	2	5086,1322	0,9821
chr15	96334113	96334814	prostate_carcinoma.57112	0	.	96334113	96334814	0	1	701	0
chr15	96339040	96340859	prostate_carcinoma.57113	0	.	96339040	96340859	0	1	1819	0
chr15	96339040	96340859	prostate_carcinoma.57114	0	-	96339040	96340859	0	2	398,1300	0,519
chr15	96339075	96340881	prostate_normal.33266	0	.	96339075	96340881	0	1	1806	0
chr15	96341199	96342576	prostate_carcinoma.57115	0	.	96341199	96342576	0	1	1377	0
chr15	96344657	96345669	prostate_carcinoma.57116	0	.	96344657	96345669	0	1	1012	0
chr15	96344715	96345668	prostate_normal.33267	0	.	96344715	96345668	0	1	953	0
chr15	96344715	96345668	prostate_normal.33268	0	+	96344715	96345668	0	2	313,514	0,439
chr15	96345095	96345484	colon_Raymond.73607	0	.	96345095	96345484	0	1	389	0
chr15	96376757	96378439	prostate_normal.33269	0	.	96376757	96378439	0	1	1682	0
chr15	96376762	96378499	prostate_carcinoma.57117	0	.	96376762	96378499	0	1	1737	0
chr15	96442938	96444039	testes_Burge.29693	0	.	96442938	96444039	0	1	1101	0
chr15	96680510	96683004	prostate_carcinoma.57118	0	.	96680510	96683004	0	1	2494	0
chr15	96766846	96768047	melanoma_Garraway_short_term_cultures.39491	0	.	96766846	96768047	0	1	1201	0
chr15	96781466	96782664	A549_Myers.46675	0	.	96781466	96782664	0	1	1198	0
chr15	96788932	96789286	A549_Myers.46677	0	.	96788932	96789286	0	1	354	0
chr15	96882466	96883279	B_Cells_Pritchard.1971573	0	.	96882466	96883279	0	1	813	0
chr15	96907446	96909568	H1_polyA+.66615	0	.	96907446	96909568	0	1	2122	0
chr15	96907866	96909462	prostate_carcinoma.57119	0	.	96907866	96909462	0	1	1596	0
chr15	96908425	96909549	prostate_normal.33273	0	.	96908425	96909549	0	1	1124	0
chr15	96908437	96909694	A549_Myers.46683	0	.	96908437	96909694	0	1	1257	0
chr15	96908560	96909448	brain_AmbionMAQC.24924	0	.	96908560	96909448	0	1	888	0
chr15	96961054	96961400	A549_Myers.46685	0	.	96961054	96961400	0	1	346	0
chr15	97005899	97008862	H1_polyA+.66620	0	.	97005899	97008862	0	1	2963	0
chr15	97006629	97009027	prostate_carcinoma.57122	0	.	97006629	97009027	0	1	2398	0
chr15	97007547	97008270	HeLa_polyA+_Chen.20631	0	.	97007547	97008270	0	1	723	0
chr15	97007697	97008329	HepG2_Caltech_ENCODE.20763	0	.	97007697	97008329	0	1	632	0
chr15	97375637	97378707	B_Cells_Pritchard.1972969	0	.	97375637	97378707	0	1	3070	0
chr15	97375746	97376911	BT20_Thompson.12165	0	.	97375746	97376911	0	1	1165	0
chr15	97375776	97377519	B_cells_Cheung.114783	0	.	97375776	97377519	0	1	1743	0
chr15	97375841	97376432	HeLa_polyA-_Chen.11134	0	.	97375841	97376432	0	1	591	0
chr15	97378883	97379972	B_cells_Cheung.114785	0	.	97378883	97379972	0	1	1089	0
chr15	97378895	97379931	B_Cells_Pritchard.1972967	0	.	97378895	97379931	0	1	1036	0
chr15	97379104	97379498	A549_Myers.46766	0	.	97379104	97379498	0	1	394	0
chr15	97380310	97381798	B_Cells_Pritchard.1972975	0	+	97380310	97381798	0	1	1488	0
chr15	97380310	97384405	B_Cells_Pritchard.1972977	0	-	97380310	97384405	0	2	1715,86	0,4009
chr15	97382125	97382557	B_Cells_Pritchard.1972981	0	-	97382125	97382557	0	1	432	0
chr15	97384841	97387148	B_Cells_Pritchard.1972973	0	-	97384841	97387148	0	1	2307	0
chr15	97385067	97385771	B_cells_Cheung.114789	0	.	97385067	97385771	0	1	704	0
chr15	97385839	97386696	B_cells_Cheung.114790	0	.	97385839	97386696	0	1	857	0
chr15	97387279	97407925	B_Cells_Pritchard.1973115	0	+	97387279	97407925	0	2	4518,129	0,20517
chr15	97387279	97391831	B_Cells_Pritchard.1973117	0	-	97387279	97391831	0	2	2248,2236	0,2316
chr15	97387698	97390537	H1_polyA+.66741	0	.	97387698	97390537	0	1	2839	0
chr15	97389295	97391815	HIT000250189	0	+	97389295	97391815	0	1	2520	0
chr15	97389433	97391797	B_cells_Cheung.114794	0	.	97389433	97391797	0	1	2364	0
chr15	97389864	97391617	MIP101.39575	0	.	97389864	97391617	0	1	1753	0
chr15	97390032	97391640	prostate_carcinoma.57265	0	.	97390032	97391640	0	1	1608	0
chr15	97390144	97391768	T47D_Burge_Thompson.16236	0	.	97390144	97391768	0	1	1624	0
chr15	97390176	97391640	HeLa_polyA+_Chen.20636	0	.	97390176	97391640	0	1	1464	0
chr15	97390263	97390634	prostate_normal.33309	0	.	97390263	97390634	0	1	371	0
chr15	97418384	97419529	REMC_MyoepithelialBreast.54607	0	.	97418384	97419529	0	1	1145	0
chr15	97419718	97420417	A549_Myers.46772	0	.	97419718	97420417	0	1	699	0
chr15	97422672	97423167	A549_Myers.46774	0	.	97422672	97423167	0	1	495	0
chr15	97436950	97437612	B_Cells_Pritchard.1973221	0	.	97436950	97437612	0	1	662	0
chr15	97447681	97448187	B_Cells_Pritchard.1973249	0	.	97447681	97448187	0	1	506	0
chr15	97453872	97454292	A549_Myers.46777	0	.	97453872	97454292	0	1	420	0
chr15	97759928	97760529	B_Cells_Pritchard.1973791	0	.	97759928	97760529	0	1	601	0
chr15	97760901	97761440	B_Cells_Pritchard.1973793	0	.	97760901	97761440	0	1	539	0
chr15	97760926	97772381	HepG2_Caltech_ENCODE.20760	0	+	97760926	97772381	0	3	387,205,652	0,2676,10803
chr15	97770275	97770651	A549_Myers.46833	0	.	97770275	97770651	0	1	376	0
chr15	97770396	97770871	B_Cells_Pritchard.1973837	0	.	97770396	97770871	0	1	475	0
chr15	97771819	97773015	B_cells_Cheung.114913	0	.	97771819	97773015	0	1	1196	0
chr15	97772007	97772341	A549_Myers.46834	0	.	97772007	97772341	0	1	334	0
chr15	97772473	97774915	HepG2_Caltech_ENCODE.20761	0	.	97772473	97774915	0	1	2442	0
chr15	97773683	97774787	B_Cells_Pritchard.1973841	0	.	97773683	97774787	0	1	1104	0
chr15	97774043	97774905	B_cells_Cheung.114915	0	.	97774043	97774905	0	1	862	0
chr15	97774165	97774835	prostate_carcinoma.57298	0	.	97774165	97774835	0	1	670	0
chr15	97783607	97785101	melanoma_Garraway_short_term_cultures.39565	0	.	97783607	97785101	0	1	1494	0
chr15	97783924	97784873	MCF7_Burge_Thompson.17182	0	.	97783924	97784873	0	1	949	0
chr15	97784275	97784740	B_Cells_Pritchard.1973879	0	-	97784275	97784740	0	1	465	0
chr15	97784462	97784836	B_cells_Cheung.114917	0	.	97784462	97784836	0	1	374	0
chr15	97789222	97789839	A549_Myers.46861	0	.	97789222	97789839	0	1	617	0
chr15	97791423	97792550	B_Cells_Pritchard.1973919	0	.	97791423	97792550	0	1	1127	0
chr15	97792761	97793515	B_Cells_Pritchard.1973921	0	.	97792761	97793515	0	1	754	0
chr15	97792897	97793363	A549_Myers.46863	0	.	97792897	97793363	0	1	466	0
chr15	97794892	97795332	A549_Myers.46864	0	.	97794892	97795332	0	1	440	0
chr15	97805387	97805762	A549_Myers.46866	0	.	97805387	97805762	0	1	375	0
chr15	97808118	97808720	B_Cells_Pritchard.1973991	0	.	97808118	97808720	0	1	602	0
chr15	97810222	97810724	B_Cells_Pritchard.1974003	0	.	97810222	97810724	0	1	502	0
chr15	97810350	97810849	A549_Myers.46867	0	.	97810350	97810849	0	1	499	0
chr15	97811342	97817065	B_Cells_Pritchard.1974007	0	+	97811342	97817065	0	2	380,74	0,5649
chr15	97812484	97812912	B_Cells_Pritchard.1974017	0	+	97812484	97812912	0	1	428	0
chr15	97824496	97825116	melanoma_Garraway_short_term_cultures.39567	0	.	97824496	97825116	0	1	620	0
chr15	97832685	97833290	A549_Myers.46868	0	.	97832685	97833290	0	1	605	0
chr15	97843839	97844542	B_cells_Cheung.114919	0	.	97843839	97844542	0	1	703	0
chr15	97846637	97867573	B_cells_Cheung.114922	0	-	97846637	97867573	0	5	2280,2433,3193,73,265	0,7778,11423,18233,20671
chr15	97849882	97850749	B_cells_Cheung.114924	0	.	97849882	97850749	0	1	867	0
chr15	97854415	97857879	B_cells_Cheung.114923	0	.	97854415	97857879	0	1	3464	0
chr15	97854972	97857859	B_Cells_Pritchard.1974103	0	+	97854972	97857859	0	1	2887	0
chr15	97865806	97866218	A549_Myers.46875	0	.	97865806	97866218	0	1	412	0
chr15	97871507	97872256	B_Cells_Pritchard.1974165	0	.	97871507	97872256	0	1	749	0
chr15	97922055	97922572	B_Cells_Pritchard.1974319	0	.	97922055	97922572	0	1	517	0
chr15	98101168	98102033	REMC_MyoepithelialBreast.54668	0	.	98101168	98102033	0	1	865	0
chr15	98101184	98102131	REMC_BreastStem.29756	0	.	98101184	98102131	0	1	947	0
chr15	98103570	98106620	A549_Myers.46889	0	+	98103570	98106620	0	2	130,172	0,2878
chr15	98105734	98106690	REMC_MyoepithelialBreast.54671	0	.	98105734	98106690	0	1	956	0
chr15	98110886	98111698	REMC_BreastStem.29759	0	.	98110886	98111698	0	1	812	0
chr15	98126970	98128138	REMC_LuminalBreast.58721	0	.	98126970	98128138	0	1	1168	0
chr15	98145860	98146843	B_cells_Cheung.114974	0	.	98145860	98146843	0	1	983	0
chr15	98145954	98146818	B_Cells_Pritchard.1974833	0	.	98145954	98146818	0	1	864	0
chr15	98175100	98177229	B_cells_Cheung.114993	0	.	98175100	98177229	0	1	2129	0
chr15	98196227	98196908	B_cells_Cheung.115014	0	.	98196227	98196908	0	1	681	0
chr15	98196244	98196810	REMC_MyoepithelialBreast.54679	0	.	98196244	98196810	0	1	566	0
chr15	98198569	98199079	B_cells_Cheung.115016	0	.	98198569	98199079	0	1	510	0
chr15	98199595	98203203	B_cells_Cheung.115020	0	.	98199595	98203203	0	1	3608	0
chr15	98199672	98200420	H1_polyA+.66833	0	.	98199672	98200420	0	1	748	0
chr15	98204656	98205078	B_cells_Cheung.115018	0	.	98204656	98205078	0	1	422	0
chr15	98205141	98205534	B_cells_Cheung.115019	0	.	98205141	98205534	0	1	393	0
chr15	98205900	98207497	B_cells_Cheung.115021	0	.	98205900	98207497	0	1	1597	0
chr15	98206667	98207505	REMC_MyoepithelialBreast.54683	0	.	98206667	98207505	0	1	838	0
chr15	98207065	98207523	H1_polyA+.66835	0	.	98207065	98207523	0	1	458	0
chr15	98222420	98225156	B_cells_Cheung.115043	0	.	98222420	98225156	0	1	2736	0
chr15	98224005	98225294	HepG2_Caltech_ENCODE.20793	0	.	98224005	98225294	0	1	1289	0
chr15	98224332	98225135	B_Cells_Pritchard.1975095	0	.	98224332	98225135	0	1	803	0
chr15	98229265	98230208	B_cells_Cheung.115047	0	.	98229265	98230208	0	1	943	0
chr15	98238179	98238759	REMC_BreastStem.29764	0	.	98238179	98238759	0	1	580	0
chr15	98240736	98241110	REMC_MyoepithelialBreast.54687	0	.	98240736	98241110	0	1	374	0
chr15	98241449	98241769	REMC_MyoepithelialBreast.54688	0	.	98241449	98241769	0	1	320	0
chr15	98273728	98275714	HepG2_Caltech_ENCODE.20796	0	.	98273728	98275714	0	1	1986	0
chr15	98275808	98277699	HepG2_Caltech_ENCODE.20800	0	.	98275808	98277699	0	1	1891	0
chr15	98290877	98293282	REMC_MyoepithelialBreast.54715	0	.	98290877	98293282	0	1	2405	0
chr15	98290885	98291217	B_Cells_Pritchard.1975373	0	.	98290885	98291217	0	1	332	0
chr15	98307791	98312252	REMC_MyoepithelialBreast.54721	0	.	98307791	98312252	0	1	4461	0
chr15	98312369	98313017	REMC_MyoepithelialBreast.54722	0	.	98312369	98313017	0	1	648	0
chr15	98313618	98315676	REMC_MyoepithelialBreast.54723	0	.	98313618	98315676	0	1	2058	0
chr15	98326199	98327444	H1_polyA+.66843	0	.	98326199	98327444	0	1	1245	0
chr15	98730022	98731173	prostate_carcinoma.57352	0	.	98730022	98731173	0	1	1151	0
chr15	98740837	98742065	prostate_carcinoma.57361	0	.	98740837	98742065	0	1	1228	0
chr15	98751069	98752747	REMC_MyoepithelialBreast.54888	0	.	98751069	98752747	0	1	1678	0
chr15	98910856	98912630	K562.25721	0	.	98910856	98912630	0	1	1774	0
chr15	98910940	98911800	melanoma_Garraway_short_term_cultures.39631	0	.	98910940	98911800	0	1	860	0
chr15	98911018	98912044	CD4_Plagnol_resting.35672	0	.	98911018	98912044	0	1	1026	0
chr15	98911021	98912149	REMC_LuminalBreast.58764	0	.	98911021	98912149	0	1	1128	0
chr15	98911022	98912032	H1_polyA+.66877	0	.	98911022	98912032	0	1	1010	0
chr15	98911052	98912099	HepG2_Caltech_ENCODE.20833	0	.	98911052	98912099	0	1	1047	0
chr15	98911053	98912053	CD4_Plagnol_activated.36533	0	.	98911053	98912053	0	1	1000	0
chr15	98911060	98912040	REMC_BreastStem.29815	0	.	98911060	98912040	0	1	980	0
chr15	98911079	98911616	BT474_Burge_Thompson.18832	0	.	98911079	98911616	0	1	537	0
chr15	98911086	98912039	brain_AmbionMAQC.24973	0	.	98911086	98912039	0	1	953	0
chr15	98911101	98911903	MCF7_Burge_Thompson.17204	0	.	98911101	98911903	0	1	802	0
chr15	98911186	98911836	HeLa_polyA+_Chen.20668	0	.	98911186	98911836	0	1	650	0
chr15	98911200	98911909	HME_Burge.22546	0	.	98911200	98911909	0	1	709	0
chr15	98911216	98912034	BT20_Thompson.12184	0	.	98911216	98912034	0	1	818	0
chr15	98911298	98911813	MCF10A_Thompson.12447	0	.	98911298	98911813	0	1	515	0
chr15	98911357	98911880	NEC_from_H9.42999	0	.	98911357	98911880	0	1	523	0
chr15	98911357	98911914	ZR751_Thompson.13703	0	.	98911357	98911914	0	1	557	0
chr15	98911478	98912001	MDAMB231_Thompson.12863	0	.	98911478	98912001	0	1	523	0
chr15	98911535	98916116	pHIT000114843	0	+	98911535	98916116	0	2	54,363	0,4218
chr15	98911641	98912037	A549_Myers.46930	0	.	98911641	98912037	0	1	396	0
chr15	98911680	98912043	BT474_Burge_Thompson.18833	0	.	98911680	98912043	0	1	363	0
chr15	98911687	98912200	HIT000325586	0	-	98911687	98912200	0	1	513	0
chr15	98911729	98912076	H9_polyA+.25804	0	.	98911729	98912076	0	1	347	0
chr15	98912776	98914715	REMC_LuminalBreast.58766	0	.	98912776	98914715	0	1	1939	0
chr15	98913927	98914414	REMC_BreastStem.29817	0	.	98913927	98914414	0	1	487	0
chr15	98914019	98914654	K562.25723	0	.	98914019	98914654	0	1	635	0
chr15	98914195	98914519	HepG2_Caltech_ENCODE.20834	0	.	98914195	98914519	0	1	324	0
chr15	98914754	98916071	K562.25724	0	.	98914754	98916071	0	1	1317	0
chr15	98916014	98916742	REMC_BreastStem.29818	0	.	98916014	98916742	0	1	728	0
chr15	98916177	98917675	K562.25725	0	.	98916177	98917675	0	1	1498	0
chr15	98916287	98916685	H9_polyA+.25805	0	.	98916287	98916685	0	1	398	0
chr15	98916292	98917090	BT474_Burge_Thompson.18838	0	.	98916292	98917090	0	1	798	0
chr15	98916297	98916603	melanoma_Garraway_short_term_cultures.39632	0	.	98916297	98916603	0	1	306	0
chr15	98916298	98917687	CD4_Plagnol_activated.36539	0	.	98916298	98917687	0	1	1389	0
chr15	98916300	98917236	CD4_Plagnol_resting.35673	0	.	98916300	98917236	0	1	936	0
chr15	98916306	98916663	A549_Myers.46931	0	.	98916306	98916663	0	1	357	0
chr15	98916308	98916643	lymph_node_Burge.27462	0	.	98916308	98916643	0	1	335	0
chr15	98916308	98916644	HME_Burge.22547	0	.	98916308	98916644	0	1	336	0
chr15	98916566	98917886	HepG2_Caltech_ENCODE.20835	0	.	98916566	98917886	0	1	1320	0
chr15	98919552	98921321	CD4_Plagnol_resting.35670	0	.	98919552	98921321	0	1	1769	0
chr15	98922932	98923660	prostate_carcinoma.57380	0	.	98922932	98923660	0	1	728	0
chr15	98923102	98923641	CD4_Plagnol_activated.36536	0	.	98923102	98923641	0	1	539	0
chr15	99043940	99048306	HIT000028074	0	+	99043940	99048306	0	1	4366	0
chr15	99068242	99071405	REMC_LuminalBreast.58774	0	.	99068242	99071405	0	1	3163	0
chr15	99068282	99068676	REMC_MyoepithelialBreast.54845	0	.	99068282	99068676	0	1	394	0
chr15	99069519	99071172	REMC_MyoepithelialBreast.54846	0	.	99069519	99071172	0	1	1653	0
chr15	99073749	99074100	A549_Myers.46955	0	.	99073749	99074100	0	1	351	0
chr15	99074083	99075196	REMC_LuminalBreast.58775	0	.	99074083	99075196	0	1	1113	0
chr15	99078044	99081224	REMC_LuminalBreast.58776	0	.	99078044	99081224	0	1	3180	0
chr15	99078057	99078471	kidney_Raymond.62619	0	.	99078057	99078471	0	1	414	0
chr15	99078077	99078559	A549_Myers.46958	0	.	99078077	99078559	0	1	482	0
chr15	99082676	99083712	REMC_LuminalBreast.58779	0	.	99082676	99083712	0	1	1036	0
chr15	99084509	99085310	REMC_LuminalBreast.58780	0	.	99084509	99085310	0	1	801	0
chr15	99085376	99086577	REMC_LuminalBreast.58781	0	.	99085376	99086577	0	1	1201	0
chr15	99100824	99104535	REMC_LuminalBreast.58788	0	.	99100824	99104535	0	1	3711	0
chr15	99104806	99131269	REMC_LuminalBreast.58789	0	+	99104806	99131269	0	3	18878,2240,3810	0,19141,22653
chr15	99104806	99123719	REMC_LuminalBreast.58790	0	.	99104806	99123719	0	1	18913	0
chr15	99119532	99120408	T47D_Burge_Thompson.16268	0	.	99119532	99120408	0	1	876	0
chr15	99120139	99122152	prostate_carcinoma.57387	0	.	99120139	99122152	0	1	2013	0
chr15	99122706	99124521	prostate_carcinoma.57388	0	.	99122706	99124521	0	1	1815	0
chr15	99123496	99123814	A549_Myers.46965	0	.	99123496	99123814	0	1	318	0
chr15	99123787	99131269	REMC_LuminalBreast.58791	0	.	99123787	99131269	0	1	7482	0
chr15	99123849	99124495	BT474_Burge_Thompson.18844	0	.	99123849	99124495	0	1	646	0
chr15	99127013	99127852	REMC_MyoepithelialBreast.54852	0	.	99127013	99127852	0	1	839	0
chr15	99127117	99128081	prostate_carcinoma.57390	0	.	99127117	99128081	0	1	964	0
chr15	99128149	99129183	prostate_carcinoma.57391	0	.	99128149	99129183	0	1	1034	0
chr15	99129420	99129832	REMC_MyoepithelialBreast.54854	0	.	99129420	99129832	0	1	412	0
chr15	99132662	99147510	REMC_LuminalBreast.58793	0	-	99132662	99147510	0	2	9685,4524	0,10324
chr15	99132662	99147510	REMC_LuminalBreast.58792	0	.	99132662	99147510	0	1	14848	0
chr15	99135891	99137379	melanoma_Garraway_short_term_cultures.39645	0	.	99135891	99137379	0	1	1488	0
chr15	99136857	99137955	prostate_carcinoma.57393	0	.	99136857	99137955	0	1	1098	0
chr15	99140073	99143920	HIT000047004	0	-	99140073	99143920	0	1	3847	0
chr15	99140480	99142289	melanoma_Garraway_short_term_cultures.39646	0	.	99140480	99142289	0	1	1809	0
chr15	99141197	99142963	HIT000501640	0	-	99141197	99142963	0	1	1766	0
chr15	99141687	99142213	XR_041906	0	-	99141687	99142213	0	1	526	0
chr15	99141749	99142766	prostate_carcinoma.57395	0	.	99141749	99142766	0	1	1017	0
chr15	99141859	99142272	A549_Myers.46966	0	.	99141859	99142272	0	1	413	0
chr15	99142416	99145027	melanoma_Garraway_short_term_cultures.39647	0	.	99142416	99145027	0	1	2611	0
chr15	99147570	99157086	REMC_LuminalBreast.58794	0	.	99147570	99157086	0	1	9516	0
chr15	99155386	99156386	REMC_MyoepithelialBreast.54860	0	.	99155386	99156386	0	1	1000	0
chr15	99157266	99159281	REMC_LuminalBreast.58795	0	.	99157266	99159281	0	1	2015	0
chr15	99158472	99160878	melanoma_Garraway_short_term_cultures.39650	0	-	99158472	99160878	0	2	1655,108	0,2298
chr15	99158647	99159000	A549_Myers.46968	0	.	99158647	99159000	0	1	353	0
chr15	99159409	99165345	REMC_LuminalBreast.58797	0	.	99159409	99165345	0	1	5936	0
chr15	99159409	99165345	REMC_LuminalBreast.58796	0	-	99159409	99165345	0	2	718,4575	0,1361
chr15	99159864	99160560	B_Cells_Pritchard.1977985	0	.	99159864	99160560	0	1	696	0
chr15	99165497	99169654	REMC_LuminalBreast.58798	0	.	99165497	99169654	0	1	4157	0
chr15	99176564	99182600	Rinn_00023836	0	-	99176564	99182600	0	2	946,399	0,5637
chr15	99188215	99190226	REMC_LuminalBreast.58802	0	.	99188215	99190226	0	1	2011	0
chr15	99188830	99189971	REMC_MyoepithelialBreast.54862	0	.	99188830	99189971	0	1	1141	0
chr15	99207220	99207923	MCF7_Burge_Thompson.17223	0	.	99207220	99207923	0	1	703	0
chr15	99207230	99207909	A549_Myers.46972	0	.	99207230	99207909	0	1	679	0
chr15	99207275	99207649	BT474_Burge_Thompson.18845	0	.	99207275	99207649	0	1	374	0
chr15	99207306	99207957	B_Cells_Pritchard.1978113	0	.	99207306	99207957	0	1	651	0
chr15	99207308	99234562	prostate_carcinoma.57396	0	+	99207308	99234562	0	7	362,2732,236,1412,607,82,3012	0,2912,10219,10575,12155,17777,24242
chr15	99207448	99217751	T47D_Burge_Thompson.16270	0	+	99207448	99217751	0	2	190,224	0,10079
chr15	99207557	99222010	Rinn_00023271	0	+	99207557	99222010	0	5	81,123,119,237,3338	0,380,5400,9969,11115
chr15	99207558	99222010	ENST00000431060	0	+	99207558	99222010	0	5	80,122,118,236,3337	0,380,5400,9969,11115
chr15	99207558	99222024	HIT000013148	0	-	99207558	99222024	0	5	80,122,118,236,3351	0,380,5400,9969,11115
chr15	99207659	99212947	prostate_normal.33381	0	+	99207659	99212947	0	2	11,2727	0,2561
chr15	99210215	99211147	MDAMB468_Thompson.13776	0	.	99210215	99211147	0	1	932	0
chr15	99210227	99212975	melanoma_Garraway_short_term_cultures.39654	0	.	99210227	99212975	0	1	2748	0
chr15	99210228	99211398	REMC_MyoepithelialBreast.54866	0	.	99210228	99211398	0	1	1170	0
chr15	99210228	99211147	MCF7_Burge_Thompson.17226	0	.	99210228	99211147	0	1	919	0
chr15	99210263	99211147	BT20_Thompson.12195	0	.	99210263	99211147	0	1	884	0
chr15	99210345	99211042	T47D_Burge_Thompson.16274	0	.	99210345	99211042	0	1	697	0
chr15	99211198	99212980	MCF7_Burge_Thompson.17227	0	.	99211198	99212980	0	1	1782	0
chr15	99211225	99213128	MDAMB468_Thompson.13778	0	.	99211225	99213128	0	1	1903	0
chr15	99211237	99212951	T47D_Burge_Thompson.16275	0	.	99211237	99212951	0	1	1714	0
chr15	99211257	99212973	BT20_Thompson.12196	0	.	99211257	99212973	0	1	1716	0
chr15	99211280	99212748	brain_AmbionMAQC.24984	0	.	99211280	99212748	0	1	1468	0
chr15	99211292	99211638	A549_Myers.46974	0	.	99211292	99211638	0	1	346	0
chr15	99217468	99220494	HeLa_polyA+_Chen.20679	0	.	99217468	99220494	0	1	3026	0
chr15	99217503	99223268	REMC_MyoepithelialBreast.54863	0	+	99217503	99223268	0	2	260,5385	0,380
chr15	99217529	99219171	ZR751_Thompson.13710	0	.	99217529	99219171	0	1	1642	0
chr15	99217529	99220427	prostate_normal.33385	0	+	99217529	99220427	0	2	234,2544	0,354
chr15	99217589	99225188	Rinn_00023565	0	+	99217589	99225188	0	3	174,2188,104	0,293,7495
chr15	99217802	99220385	melanoma_Garraway_short_term_cultures.39658	0	.	99217802	99220385	0	1	2583	0
chr15	99217802	99231574	melanoma_Garraway_short_term_cultures.39657	0	+	99217802	99231574	0	3	2268,82,24	0,7283,13748
chr15	99217821	99220427	prostate_normal.33386	0	.	99217821	99220427	0	1	2606	0
chr15	99217878	99220433	MDAMB468_Thompson.13783	0	.	99217878	99220433	0	1	2555	0
chr15	99217895	99233361	REMC_BreastStem.29827	0	+	99217895	99233361	0	5	337,1397,82,170,432	0,778,7190,13655,15034
chr15	99217895	99220171	REMC_BreastStem.29826	0	.	99217895	99220171	0	1	2276	0
chr15	99217900	99220400	T47D_Burge_Thompson.16277	0	.	99217900	99220400	0	1	2500	0
chr15	99217954	99220425	B_Cells_Pritchard.1978155	0	.	99217954	99220425	0	1	2471	0
chr15	99219232	99225098	Rinn_00024030	0	+	99219232	99225098	0	2	838,14	0,5852
chr15	99219253	99220447	ZR751_Thompson.13711	0	.	99219253	99220447	0	1	1194	0
chr15	99219297	99219908	XR_040806	0	+	99219297	99219908	0	1	611	0
chr15	99219298	99219908	HIT000336964	0	+	99219298	99219908	0	1	610	0
chr15	99219298	99219899	HIT000387655	0	+	99219298	99219899	0	1	601	0
chr15	99219407	99220059	MeI_Garraway.10178	0	.	99219407	99220059	0	1	652	0
chr15	99219532	99220418	brain_AmbionMAQC.24987	0	.	99219532	99220418	0	1	886	0
chr15	99219605	99220379	MB435_Burge.23529	0	.	99219605	99220379	0	1	774	0
chr15	99220557	99221923	REMC_BreastStem.29828	0	.	99220557	99221923	0	1	1366	0
chr15	99220572	99223166	HeLa_polyA+_Chen.20678	0	.	99220572	99223166	0	1	2594	0
chr15	99220618	99223201	MCF7_Burge_Thompson.17230	0	.	99220618	99223201	0	1	2583	0
chr15	99220618	99223242	MDAMB468_Thompson.13784	0	.	99220618	99223242	0	1	2624	0
chr15	99220618	99221932	T47D_Burge_Thompson.16269	0	.	99220618	99221932	0	1	1314	0
chr15	99220624	99223119	ZR751_Thompson.13712	0	.	99220624	99223119	0	1	2495	0
chr15	99220684	99223157	prostate_normal.33388	0	.	99220684	99223157	0	1	2473	0
chr15	99220686	99221890	B_Cells_Pritchard.1978147	0	.	99220686	99221890	0	1	1204	0
chr15	99220693	99223532	melanoma_Garraway_short_term_cultures.39660	0	.	99220693	99223532	0	1	2839	0
chr15	99220763	99221097	MB435_Burge.23528	0	.	99220763	99221097	0	1	334	0
chr15	99220764	99221544	MDAMB231_Thompson.12879	0	.	99220764	99221544	0	1	780	0
chr15	99221492	99221939	brain_AmbionMAQC.24988	0	.	99221492	99221939	0	1	447	0
chr15	99221576	99221944	MB435_Burge.23527	0	.	99221576	99221944	0	1	368	0
chr15	99225946	99226723	REMC_MyoepithelialBreast.54869	0	.	99225946	99226723	0	1	777	0
chr15	99227386	99229018	HeLa_polyA+_Chen.20682	0	.	99227386	99229018	0	1	1632	0
chr15	99227480	99229182	prostate_carcinoma.57401	0	.	99227480	99229182	0	1	1702	0
chr15	99229123	99230440	HeLa_polyA+_Chen.20684	0	.	99229123	99230440	0	1	1317	0
chr15	99231401	99234817	REMC_MyoepithelialBreast.54871	0	.	99231401	99234817	0	1	3416	0
chr15	99231549	99234573	HeLa_polyA+_Chen.20686	0	.	99231549	99234573	0	1	3024	0
chr15	99232850	99234573	brain_AmbionMAQC.24986	0	.	99232850	99234573	0	1	1723	0
chr15	99429390	99429769	liver_polyA+.79375	0	.	99429390	99429769	0	1	379	0
chr15	99430906	99431596	REMC_MyoepithelialBreast.54943	0	.	99430906	99431596	0	1	690	0
chr15	99431082	99431608	REMC_LuminalBreast.66052	0	.	99431082	99431608	0	1	526	0
chr15	99433594	99434317	REMC_LuminalBreast.66054	0	.	99433594	99434317	0	1	723	0
chr15	99433925	99434333	REMC_BreastStem.29849	0	.	99433925	99434333	0	1	408	0
chr15	99434987	99435686	REMC_BreastStem.29851	0	.	99434987	99435686	0	1	699	0
chr15	99435108	99435945	REMC_LuminalBreast.66056	0	.	99435108	99435945	0	1	837	0
chr15	99435109	99435862	REMC_MyoepithelialBreast.54947	0	.	99435109	99435862	0	1	753	0
chr15	99435120	99435671	HeLa_polyA+_Chen.20697	0	.	99435120	99435671	0	1	551	0
chr15	99435126	99435769	B_cells_Cheung.115422	0	.	99435126	99435769	0	1	643	0
chr15	99436542	99436845	A549_Myers.47027	0	.	99436542	99436845	0	1	303	0
chr15	99436766	99438258	B_cells_Cheung.115423	0	.	99436766	99438258	0	1	1492	0
chr15	99438217	99450009	B_Cells_Pritchard.1978363	0	+	99438217	99450009	0	2	92,1164	0,10628
chr15	99439034	99440260	REMC_MyoepithelialBreast.54948	0	.	99439034	99440260	0	1	1226	0
chr15	99439430	99440153	prostate_carcinoma.57779	0	.	99439430	99440153	0	1	723	0
chr15	99439685	99440202	H1_polyA+.66899	0	.	99439685	99440202	0	1	517	0
chr15	99443956	99444292	pHIT000114857	0	+	99443956	99444292	0	1	336	0
chr15	99444270	99444841	A549_Myers.47030	0	.	99444270	99444841	0	1	571	0
chr15	99446266	99446630	testes_Burge.29817	0	.	99446266	99446630	0	1	364	0
chr15	99447937	99452174	prostate_carcinoma.57774	0	.	99447937	99452174	0	1	4237	0
chr15	99448213	99450363	melanoma_Garraway_short_term_cultures.39701	0	.	99448213	99450363	0	1	2150	0
chr15	99448311	99449009	H1_polyA+.66900	0	.	99448311	99449009	0	1	698	0
chr15	99448430	99451044	REMC_LuminalBreast.66049	0	.	99448430	99451044	0	1	2614	0
chr15	99449329	99450861	H1_polyA+.66901	0	.	99449329	99450861	0	1	1532	0
chr15	99449375	99451859	prostate_normal.33412	0	.	99449375	99451859	0	1	2484	0
chr15	99449475	99450656	REMC_MyoepithelialBreast.54911	0	.	99449475	99450656	0	1	1181	0
chr15	99450147	99451110	B_Cells_Pritchard.1978427	0	.	99450147	99451110	0	1	963	0
chr15	99456413	99457613	REMC_LuminalBreast.58846	0	.	99456413	99457613	0	1	1200	0
chr15	99456502	99457574	prostate_carcinoma.57781	0	.	99456502	99457574	0	1	1072	0
chr15	99457918	99458749	REMC_LuminalBreast.58847	0	.	99457918	99458749	0	1	831	0
chr15	99458851	99459512	B_Cells_Pritchard.1978457	0	.	99458851	99459512	0	1	661	0
chr15	99459062	99459487	prostate_carcinoma.57783	0	.	99459062	99459487	0	1	425	0
chr15	99465731	99466914	B_Cells_Pritchard.1978487	0	.	99465731	99466914	0	1	1183	0
chr15	99466234	99466882	prostate_carcinoma.57786	0	.	99466234	99466882	0	1	648	0
chr15	99468448	99468806	B_Cells_Pritchard.1978495	0	.	99468448	99468806	0	1	358	0
chr15	99469352	99469691	A549_Myers.47035	0	.	99469352	99469691	0	1	339	0
chr15	99476699	99494777	B_Cells_Pritchard.1978535	0	-	99476699	99494777	0	2	667,397	0,17681
chr15	99478542	99479068	A549_Myers.47036	0	.	99478542	99479068	0	1	526	0
chr15	99479334	99479936	A549_Myers.47037	0	.	99479334	99479936	0	1	602	0
chr15	99479341	99480420	prostate_carcinoma.57422	0	.	99479341	99480420	0	1	1079	0
chr15	99479556	99480420	B_cells_Cheung.115152	0	.	99479556	99480420	0	1	864	0
chr15	99479695	99480111	B_Cells_Pritchard.1978539	0	-	99479695	99480111	0	1	416	0
chr15	99479870	99480403	prostate_normal.33413	0	.	99479870	99480403	0	1	533	0
chr15	99485371	99486856	prostate_carcinoma.57425	0	.	99485371	99486856	0	1	1485	0
chr15	99485449	99486960	B_cells_Cheung.115155	0	.	99485449	99486960	0	1	1511	0
chr15	99485534	99486732	B_Cells_Pritchard.1978549	0	-	99485534	99486732	0	1	1198	0
chr15	99489790	99490897	prostate_carcinoma.57426	0	.	99489790	99490897	0	1	1107	0
chr15	99490252	99491161	A549_Myers.47050	0	.	99490252	99491161	0	1	909	0
chr15	99490498	99490988	B_cells_Cheung.115158	0	.	99490498	99490988	0	1	490	0
chr15	99491395	99492523	prostate_carcinoma.57427	0	.	99491395	99492523	0	1	1128	0
chr15	99494358	99495066	prostate_carcinoma.57428	0	.	99494358	99495066	0	1	708	0
chr15	99494384	99495932	MIP101.39650	0	.	99494384	99495932	0	1	1548	0
chr15	99495487	99496405	REMC_MyoepithelialBreast.54916	0	.	99495487	99496405	0	1	918	0
chr15	99495857	99496572	B_Cells_Pritchard.1978587	0	.	99495857	99496572	0	1	715	0
chr15	99497747	99498556	prostate_carcinoma.57431	0	.	99497747	99498556	0	1	809	0
chr15	99497910	99499277	MIP101.39651	0	.	99497910	99499277	0	1	1367	0
chr15	99498308	99498783	B_Cells_Pritchard.1978593	0	.	99498308	99498783	0	1	475	0
chr15	99498348	99499280	REMC_MyoepithelialBreast.54917	0	.	99498348	99499280	0	1	932	0
chr15	99499311	99500157	H1_polyA+.66908	0	.	99499311	99500157	0	1	846	0
chr15	99499570	99500035	B_Cells_Pritchard.1978599	0	.	99499570	99500035	0	1	465	0
chr15	99499588	99500056	prostate_carcinoma.57433	0	.	99499588	99500056	0	1	468	0
chr15	99500787	99502573	B_cells_Cheung.115163	0	.	99500787	99502573	0	1	1786	0
chr15	99501593	99504725	REMC_LuminalBreast.58848	0	.	99501593	99504725	0	1	3132	0
chr15	99503007	99504678	B_cells_Cheung.115164	0	.	99503007	99504678	0	1	1671	0
chr15	99503186	99504549	prostate_carcinoma.57438	0	.	99503186	99504549	0	1	1363	0
chr15	99503340	99504699	REMC_MyoepithelialBreast.54919	0	.	99503340	99504699	0	1	1359	0
chr15	99503363	99504607	B_Cells_Pritchard.1978613	0	-	99503363	99504607	0	1	1244	0
chr15	99503413	99504452	T47D_Burge_Thompson.16285	0	.	99503413	99504452	0	1	1039	0
chr15	99503418	99504628	H1_polyA+.66911	0	.	99503418	99504628	0	1	1210	0
chr15	99503418	99503945	HepG2_Caltech_ENCODE.20856	0	.	99503418	99503945	0	1	527	0
chr15	99503427	99504569	MIP101.39652	0	.	99503427	99504569	0	1	1142	0
chr15	99503494	99504695	REMC_BreastStem.29853	0	.	99503494	99504695	0	1	1201	0
chr15	99503537	99504021	prostate_normal.33414	0	.	99503537	99504021	0	1	484	0
chr15	99504753	99505566	H9_polyA+.25928	0	.	99504753	99505566	0	1	813	0
chr15	99504759	99505480	B_cells_Cheung.115165	0	.	99504759	99505480	0	1	721	0
chr15	99504763	99505691	B_Cells_Pritchard.1978603	0	-	99504763	99505691	0	1	928	0
chr15	99504765	99505272	REMC_MyoepithelialBreast.54920	0	.	99504765	99505272	0	1	507	0
chr15	99504775	99505620	REMC_BreastStem.29854	0	.	99504775	99505620	0	1	845	0
chr15	99504784	99505360	REMC_LuminalBreast.58849	0	.	99504784	99505360	0	1	576	0
chr15	99504805	99505426	prostate_carcinoma.57439	0	.	99504805	99505426	0	1	621	0
chr15	99504813	99505618	H1_polyA+.66912	0	.	99504813	99505618	0	1	805	0
chr15	99504828	99505697	MIP101.39653	0	.	99504828	99505697	0	1	869	0
chr15	99504865	99505393	melanoma_Garraway_short_term_cultures.39705	0	.	99504865	99505393	0	1	528	0
chr15	99505755	99507718	REMC_MyoepithelialBreast.54921	0	.	99505755	99507718	0	1	1963	0
chr15	99505796	99507453	B_Cells_Pritchard.1978615	0	.	99505796	99507453	0	1	1657	0
chr15	99507614	99508694	B_Cells_Pritchard.1978617	0	.	99507614	99508694	0	1	1080	0
chr15	99507776	99508259	prostate_carcinoma.57440	0	.	99507776	99508259	0	1	483	0
chr15	99508028	99508567	B_cells_Cheung.115167	0	.	99508028	99508567	0	1	539	0
chr15	99511304	99512050	B_Cells_Pritchard.1978631	0	.	99511304	99512050	0	1	746	0
chr15	99511511	99512149	B_cells_Cheung.115168	0	.	99511511	99512149	0	1	638	0
chr15	99511755	99512150	A549_Myers.47054	0	.	99511755	99512150	0	1	395	0
chr15	99516839	99517510	B_Cells_Pritchard.1978661	0	.	99516839	99517510	0	1	671	0
chr15	99520394	99522039	REMC_MyoepithelialBreast.55130	0	.	99520394	99522039	0	1	1645	0
chr15	99523357	99530293	REMC_MyoepithelialBreast.55131	0	.	99523357	99530293	0	2	1143,4656	0,2280
chr15	99525997	99528568	prostate_carcinoma.57441	0	.	99525997	99528568	0	1	2571	0
chr15	99526003	99528032	B_Cells_Pritchard.1978703	0	.	99526003	99528032	0	1	2029	0
chr15	99526464	99528737	REMC_LuminalBreast.58853	0	.	99526464	99528737	0	1	2273	0
chr15	99528170	99529445	B_Cells_Pritchard.1978705	0	.	99528170	99529445	0	1	1275	0
chr15	99528198	99529137	prostate_normal.33416	0	.	99528198	99529137	0	1	939	0
chr15	99528377	99529209	melanoma_Garraway_short_term_cultures.39709	0	.	99528377	99529209	0	1	832	0
chr15	99528693	99529425	REMC_BreastStem.30194	0	.	99528693	99529425	0	1	732	0
chr15	99528746	99529239	prostate_carcinoma.57442	0	.	99528746	99529239	0	1	493	0
chr15	99611616	99613415	H1_polyA+.66966	0	.	99611616	99613415	0	1	1799	0
chr15	99611702	99614960	REMC_MyoepithelialBreast.55156	0	.	99611702	99614960	0	1	3258	0
chr15	99614098	99614937	REMC_BreastStem.30197	0	.	99614098	99614937	0	1	839	0
chr15	99614990	99621200	REMC_BreastStem.30198	0	.	99614990	99621200	0	1	6210	0
chr15	99615897	99616944	melanoma_Garraway_short_term_cultures.39717	0	.	99615897	99616944	0	1	1047	0
chr15	99616470	99616850	B_Cells_Pritchard.1978907	0	.	99616470	99616850	0	1	380	0
chr15	99619292	99621158	B_cells_Cheung.115187	0	.	99619292	99621158	0	1	1866	0
chr15	99621016	99621843	B_Cells_Pritchard.1978921	0	.	99621016	99621843	0	1	827	0
chr15	99621953	99623230	H1_polyA+.66968	0	.	99621953	99623230	0	1	1277	0
chr15	99621974	99623091	B_Cells_Pritchard.1978923	0	.	99621974	99623091	0	1	1117	0
chr15	99622593	99623001	A549_Myers.47071	0	.	99622593	99623001	0	1	408	0
chr15	99624456	99626478	H1_polyA+.66969	0	.	99624456	99626478	0	1	2022	0
chr15	99625013	99625386	A549_Myers.47072	0	.	99625013	99625386	0	1	373	0
chr15	99848222	99849599	HeLa_polyA+_Chen.20721	0	+	99848222	99849599	0	2	318,703	0,674
chr15	99848780	99849599	HeLa_polyA+_Chen.20722	0	.	99848780	99849599	0	1	819	0
chr15	99848811	99851352	melanoma_Garraway_short_term_cultures.39749	0	.	99848811	99851352	0	1	2541	0
chr15	99848822	99849304	K562.25741	0	.	99848822	99849304	0	1	482	0
chr15	99848832	99851104	A549_Myers.47146	0	.	99848832	99851104	0	1	2272	0
chr15	99848910	99851098	prostate_normal.33448	0	.	99848910	99851098	0	1	2188	0
chr15	99849256	99850547	ZR751_Thompson.13738	0	.	99849256	99850547	0	1	1291	0
chr15	99849354	99851101	K562.25742	0	.	99849354	99851101	0	1	1747	0
chr15	99852884	99855710	B_Cells_Pritchard.1979449	0	.	99852884	99855710	0	1	2826	0
chr15	99854514	99855017	liver_polyA+.79469	0	.	99854514	99855017	0	1	503	0
chr15	99855831	99856773	A549_Myers.47149	0	.	99855831	99856773	0	1	942	0
chr15	99855888	99856662	B_Cells_Pritchard.1979451	0	.	99855888	99856662	0	1	774	0
chr15	99856088	99858762	HepG2_Caltech_ENCODE.20859	0	.	99856088	99858762	0	1	2674	0
chr15	99856088	99858762	HepG2_Caltech_ENCODE.20858	0	-	99856088	99858762	0	3	1385,199,509	0,1642,2165
chr15	99858078	99859460	Rinn_00023841	0	-	99858078	99859460	0	3	426,131,114	0,549,1268
chr15	99859508	99860073	A549_Myers.47150	0	.	99859508	99860073	0	1	565	0
chr15	99860803	99861126	A549_Myers.47151	0	.	99860803	99861126	0	1	323	0
chr15	99879901	99880239	A549_Myers.47153	0	.	99879901	99880239	0	1	338	0
chr15	99880305	99886075	HIT000249984	0	-	99880305	99886075	0	3	2147,285,33	0,4996,5737
chr15	99883712	99886014	HepG2_Caltech_ENCODE.20862	0	.	99883712	99886014	0	1	2302	0
chr15	99886212	99886645	A549_Myers.47157	0	.	99886212	99886645	0	1	433	0
chr15	99888049	99888660	A549_Myers.47160	0	.	99888049	99888660	0	1	611	0
chr15	99888945	99889340	A549_Myers.47161	0	.	99888945	99889340	0	1	395	0
chr15	99891962	99893693	HepG2_Caltech_ENCODE.20863	0	.	99891962	99893693	0	1	1731	0
chr15	99895660	99899416	HepG2_Caltech_ENCODE.20865	0	.	99895660	99899416	0	1	3756	0
chr15	99899533	99900650	HepG2_Caltech_ENCODE.20866	0	.	99899533	99900650	0	1	1117	0
chr15	99900758	99904303	HepG2_Caltech_ENCODE.20886	0	.	99900758	99904303	0	1	3545	0
chr15	99914015	99914354	A549_Myers.47166	0	.	99914015	99914354	0	1	339	0
chr15	99924581	99925150	A549_Myers.47169	0	.	99924581	99925150	0	1	569	0
chr15	99936143	99936479	B_Cells_Pritchard.1979681	0	.	99936143	99936479	0	1	336	0
chr15	99936192	99936776	A549_Myers.47171	0	.	99936192	99936776	0	1	584	0
chr15	99947371	99948911	HepG2_Caltech_ENCODE.20888	0	.	99947371	99948911	0	1	1540	0
chr15	99949236	99949996	HepG2_Caltech_ENCODE.20889	0	.	99949236	99949996	0	1	760	0
chr15	99958327	99959623	HepG2_Caltech_ENCODE.20895	0	.	99958327	99959623	0	1	1296	0
chr15	99960218	99974338	HepG2_Caltech_ENCODE.20894	0	-	99960218	99974338	0	3	3543,240,2663	0,11042,11457
chr15	99960218	99965727	HepG2_Caltech_ENCODE.20893	0	.	99960218	99965727	0	1	5509	0
chr15	99960431	99972053	Rinn_00023843	0	-	99960431	99972053	0	3	3330,241,379	0,10828,11243
chr15	99960499	99961183	liver_polyA+.79477	0	.	99960499	99961183	0	1	684	0
chr15	99961365	99962260	REMC_BreastStem.29871	0	.	99961365	99962260	0	1	895	0
chr15	99961453	99963109	BT474_Burge_Thompson.18874	0	.	99961453	99963109	0	1	1656	0
chr15	99961602	99963035	REMC_MyoepithelialBreast.54964	0	.	99961602	99963035	0	1	1433	0
chr15	99964438	99976795	pHIT000025757	0	+	99964438	99976795	0	3	196,132,62	0,11074,12295
chr15	99965773	99966388	liver_polyA+.79483	0	.	99965773	99966388	0	1	615	0
chr15	99966674	99967978	liver_polyA+.79484	0	.	99966674	99967978	0	1	1304	0
chr15	99966789	99972053	Rinn_00024221	0	-	99966789	99972053	0	3	1167,241,379	0,4470,4885
chr15	99966973	99967963	REMC_MyoepithelialBreast.54966	0	.	99966973	99967963	0	1	990	0
chr15	99967210	99967906	A549_Myers.47172	0	.	99967210	99967906	0	1	696	0
chr15	99968042	99969068	liver_polyA+.79485	0	.	99968042	99969068	0	1	1026	0
chr15	99968209	99968590	A549_Myers.47173	0	.	99968209	99968590	0	1	381	0
chr15	99969578	99971530	liver_polyA+.79487	0	.	99969578	99971530	0	1	1952	0
chr15	99969578	99971689	liver_polyA+.79486	0	-	99969578	99971689	0	2	1922,14	0,2097
chr15	99971275	99972620	REMC_LuminalBreast.58903	0	.	99971275	99972620	0	1	1345	0
chr15	99971622	99972092	liver_polyA+.79488	0	.	99971622	99972092	0	1	470	0
chr15	99973176	99974069	REMC_MyoepithelialBreast.54983	0	.	99973176	99974069	0	1	893	0
chr15	99974247	99974628	A549_Myers.47176	0	.	99974247	99974628	0	1	381	0
chr15	99974341	99976199	REMC_MyoepithelialBreast.54984	0	.	99974341	99976199	0	1	1858	0
chr15	99974836	99976149	B_Cells_Pritchard.1979817	0	.	99974836	99976149	0	1	1313	0
chr15	99976255	99976890	B_Cells_Pritchard.1979819	0	.	99976255	99976890	0	1	635	0
chr15	99977766	99984237	REMC_MyoepithelialBreast.54986	0	.	99977766	99984237	0	1	6471	0
chr15	99979077	99982703	HIT000044552	0	+	99979077	99982703	0	1	3626	0
chr15	99979153	99981501	prostate_carcinoma.57527	0	.	99979153	99981501	0	1	2348	0
chr15	99979171	99990470	MIP101.39725	0	+	99979171	99990470	0	2	3602,285	0,11014
chr15	99979201	99984193	REMC_BreastStem.29874	0	.	99979201	99984193	0	1	4992	0
chr15	99979201	99984238	REMC_LuminalBreast.58904	0	.	99979201	99984238	0	1	5037	0
chr15	99979215	99984225	H1_polyA+.66988	0	.	99979215	99984225	0	1	5010	0
chr15	99979367	99981584	B_cells_Cheung.115220	0	.	99979367	99981584	0	1	2217	0
chr15	99981033	99982146	CD4_Plagnol_activated.36609	0	.	99981033	99982146	0	1	1113	0
chr15	99981056	99981600	CD4_Plagnol_resting.35718	0	.	99981056	99981600	0	1	544	0
chr15	99981535	99983118	B_Cells_Pritchard.1979833	0	.	99981535	99983118	0	1	1583	0
chr15	99981667	99984189	prostate_carcinoma.57528	0	.	99981667	99984189	0	1	2522	0
chr15	99982309	99982963	CD4_Plagnol_activated.36610	0	.	99982309	99982963	0	1	654	0
chr15	99982323	99982962	CD4_Plagnol_resting.35721	0	.	99982323	99982962	0	1	639	0
chr15	99982351	99983120	B_cells_Cheung.115222	0	.	99982351	99983120	0	1	769	0
chr15	99982421	99982919	prostate_normal.33451	0	.	99982421	99982919	0	1	498	0
chr15	100085040	100088112	H1_polyA+.67005	0	.	100085040	100088112	0	1	3072	0
chr15	100094617	100103458	K562.25760	0	-	100094617	100103458	0	2	478,1292	0,7549
chr15	100102491	100103869	XR_078821	0	-	100102491	100103869	0	2	147,698	0,680
chr15	100123522	100124220	B_Cells_Pritchard.1979941	0	-	100123522	100124220	0	1	698	0
chr15	100123769	100124338	K562.25772	0	.	100123769	100124338	0	1	569	0
chr15	100123857	100124226	B_cells_Cheung.115274	0	.	100123857	100124226	0	1	369	0
chr15	100139327	100139689	B_Cells_Pritchard.1979971	0	.	100139327	100139689	0	1	362	0
chr15	100334331	100336819	HIT000500255_02	0	-	100334331	100336819	0	3	959,127,354	0,1640,2134
chr16	28457	29665	REMC_LuminalBreast.58924	0	.	28457	29665	0	1	1208	0
chr16	28480	29619	H9_polyA+.25854	0	.	28480	29619	0	1	1139	0
chr16	28536	29554	MCF7_Burge_Thompson.17267	0	.	28536	29554	0	1	1018	0
chr16	28950	29425	prostate_carcinoma.57721	0	.	28950	29425	0	1	475	0
chr16	29140	29585	HeLa_polyA+_Chen.20750	0	.	29140	29585	0	1	445	0
chr16	29894	34061	B_cells_Cheung.115304	0	.	29894	34061	0	1	4167	0
chr16	30038	30859	REMC_LuminalBreast.58925	0	.	30038	30859	0	1	821	0
chr16	30878	34181	H1_polyA+.67020	0	.	30878	34181	0	1	3303	0
chr16	30921	34042	B_Cells_Pritchard.1980933	0	-	30921	34042	0	1	3121	0
chr16	30958	32009	REMC_LuminalBreast.58926	0	.	30958	32009	0	1	1051	0
chr16	31232	31876	BT474_Burge_Thompson.18890	0	.	31232	31876	0	1	644	0
chr16	31521	32247	H9_polyA+.25855	0	.	31521	32247	0	1	726	0
chr16	32612	33557	ZR751_Thompson.13754	0	.	32612	33557	0	1	945	0
chr16	32618	34000	K562.25831	0	.	32618	34000	0	1	1382	0
chr16	32717	34057	BT474_Burge_Thompson.18893	0	.	32717	34057	0	1	1340	0
chr16	32799	34101	REMC_LuminalBreast.58928	0	.	32799	34101	0	1	1302	0
chr16	132372	134442	REMC_LuminalBreast.58954	0	.	132372	134442	0	1	2070	0
chr16	133339	134355	REMC_BreastStem.29895	0	.	133339	134355	0	1	1016	0
chr16	133399	133963	B_cells_Cheung.115338	0	.	133399	133963	0	1	564	0
chr16	172608	176089	B_Cells_Pritchard.1980627	0	-	172608	176089	0	2	99,1539	0,1942
chr16	173990	174857	B_cells_Cheung.115349	0	.	173990	174857	0	1	867	0
chr16	174106	174931	REMC_BreastStem.29898	0	.	174106	174931	0	1	825	0
chr16	174107	176051	REMC_MyoepithelialBreast.55023	0	.	174107	176051	0	1	1944	0
chr16	174190	174770	CD4_Plagnol_activated.36693	0	.	174190	174770	0	1	580	0
chr16	174235	176047	REMC_LuminalBreast.58961	0	.	174235	176047	0	1	1812	0
chr16	174994	175714	HeLa_polyA+_Chen.20781	0	.	174994	175714	0	1	720	0
chr16	175107	176068	REMC_BreastStem.29899	0	.	175107	176068	0	1	961	0
chr16	175510	175901	A549_Myers.47196	0	.	175510	175901	0	1	391	0
chr16	175669	176092	CD4_Plagnol_activated.36694	0	.	175669	176092	0	1	423	0
chr16	175749	176093	brain_AmbionMAQC.25069	0	.	175749	176093	0	1	344	0
chr16	177199	177808	HeLa_polyA+_Chen.20782	0	.	177199	177808	0	1	609	0
chr16	177206	177823	CD4_Plagnol_activated.36695	0	.	177206	177823	0	1	617	0
chr16	177211	177801	melanoma_Garraway_short_term_cultures.39812	0	.	177211	177801	0	1	590	0
chr16	177220	177579	T47D_Burge_Thompson.16307	0	.	177220	177579	0	1	359	0
chr16	177239	177546	MeWo_Garraway.20602	0	.	177239	177546	0	1	307	0
chr16	177246	177784	MCF7_Burge_Thompson.17284	0	.	177246	177784	0	1	538	0
chr16	177252	177788	NEC_from_H9.43077	0	.	177252	177788	0	1	536	0
chr16	177253	177653	A549_Myers.47197	0	.	177253	177653	0	1	400	0
chr16	343184	344664	B_Cells_Pritchard.1983265	0	+	343184	344664	0	1	1480	0
chr16	343827	344662	H1_polyA+.67097	0	.	343827	344662	0	1	835	0
chr16	343952	345780	HepG2_Caltech_ENCODE.21486	0	.	343952	345780	0	1	1828	0
chr16	344147	345682	B_cells_Cheung.115402	0	+	344147	345682	0	2	362,142	0,1393
chr16	344172	344517	A549_Myers.47286	0	.	344172	344517	0	1	345	0
chr16	344533	345457	brain_AmbionMAQC.25346	0	.	344533	345457	0	1	924	0
chr16	344889	345664	B_Cells_Pritchard.1983269	0	+	344889	345664	0	1	775	0
chr16	346227	347591	REMC_MyoepithelialBreast.55034	0	.	346227	347591	0	1	1364	0
chr16	378340	380486	H1_polyA+.67100	0	.	378340	380486	0	1	2146	0
chr16	379042	379870	CD4_Plagnol_resting.35882	0	.	379042	379870	0	1	828	0
chr16	379242	379572	brain_AmbionMAQC.25120	0	.	379242	379572	0	1	330	0
chr16	381711	383383	CD4_Plagnol_resting.35883	0	.	381711	383383	0	1	1672	0
chr16	382520	383352	melanoma_Garraway_short_term_cultures.39856	0	.	382520	383352	0	1	832	0
chr16	382522	383142	MeWo_Garraway.20687	0	.	382522	383142	0	1	620	0
chr16	737534	738822	H1_polyA+.67185	0	.	737534	738822	0	1	1288	0
chr16	737553	738734	BT474_Burge_Thompson.18936	0	.	737553	738734	0	1	1181	0
chr16	737584	737967	MCF7_Burge_Thompson.18003	0	.	737584	737967	0	1	383	0
chr16	737592	738847	B_cells_Cheung.115479	0	.	737592	738847	0	1	1255	0
chr16	749232	749677	A549_Myers.51026	0	.	749232	749677	0	1	445	0
chr16	791954	793492	brain_AmbionMAQC.25150	0	.	791954	793492	0	1	1538	0
chr16	793107	793489	H9_polyA+.25999	0	.	793107	793489	0	1	382	0
chr16	806931	807596	BT474_Burge_Thompson.18966	0	.	806931	807596	0	1	665	0
chr16	806941	807503	B_Cells_Pritchard.1981451	0	.	806941	807503	0	1	562	0
chr16	807078	807633	A549_Myers.47356	0	.	807078	807633	0	1	555	0
chr16	814200	814536	B_Cells_Pritchard.1981495	0	.	814200	814536	0	1	336	0
chr16	814703	815070	B_Cells_Pritchard.1981497	0	.	814703	815070	0	1	367	0
chr16	815219	815685	A549_Myers.47358	0	.	815219	815685	0	1	466	0
chr16	818537	819065	ZR751_Thompson.13840	0	.	818537	819065	0	1	528	0
chr16	819457	820854	brain_AmbionMAQC.25157	0	.	819457	820854	0	1	1397	0
chr16	823203	823865	MCF7_Burge_Thompson.17367	0	.	823203	823865	0	1	662	0
chr16	823359	825327	REMC_LuminalBreast.59082	0	.	823359	825327	0	1	1968	0
chr16	823437	823894	brain_AmbionMAQC.25159	0	.	823437	823894	0	1	457	0
chr16	828445	830228	REMC_LuminalBreast.59085	0	.	828445	830228	0	1	1783	0
chr16	828626	835921	prostate_carcinoma.57613	0	-	828626	835921	0	2	1486,1507	0,5788
chr16	828694	830307	MCF7_Burge_Thompson.17368	0	.	828694	830307	0	1	1613	0
chr16	828807	831193	prostate_normal.33556	0	.	828807	831193	0	1	2386	0
chr16	828843	830310	B_Cells_Pritchard.1981553	0	.	828843	830310	0	1	1467	0
chr16	828861	830340	prostate_carcinoma.57614	0	.	828861	830340	0	1	1479	0
chr16	830512	831022	prostate_carcinoma.57615	0	.	830512	831022	0	1	510	0
chr16	831104	833103	prostate_carcinoma.57616	0	.	831104	833103	0	1	1999	0
chr16	832660	833484	brain_AmbionMAQC.25162	0	.	832660	833484	0	1	824	0
chr16	832682	833472	REMC_LuminalBreast.59086	0	.	832682	833472	0	1	790	0
chr16	832693	833322	MCF7_Burge_Thompson.17370	0	.	832693	833322	0	1	629	0
chr16	836010	838849	REMC_LuminalBreast.59088	0	-	836010	838849	0	2	543,1519	0,1320
chr16	837020	838849	REMC_LuminalBreast.59090	0	.	837020	838849	0	1	1829	0
chr16	838286	839119	brain_AmbionMAQC.25166	0	.	838286	839119	0	1	833	0
chr16	838504	839110	B_Cells_Pritchard.1981621	0	+	838504	839110	0	1	606	0
chr16	838675	839016	A549_Myers.47364	0	.	838675	839016	0	1	341	0
chr16	838979	840668	REMC_LuminalBreast.59091	0	.	838979	840668	0	1	1689	0
chr16	839041	839668	MCF7_Burge_Thompson.17373	0	.	839041	839668	0	1	627	0
chr16	839231	840610	Rinn_00024310	0	+	839231	840610	0	2	1087,54	0,1325
chr16	839659	841311	melanoma_Garraway_short_term_cultures.39960	0	.	839659	841311	0	1	1652	0
chr16	840020	841217	BT474_Burge_Thompson.18971	0	.	840020	841217	0	1	1197	0
chr16	840092	840441	B_cells_Cheung.115526	0	.	840092	840441	0	1	349	0
chr16	840114	840641	HeLa_polyA+_Chen.20887	0	.	840114	840641	0	1	527	0
chr16	840121	840621	brain_AmbionMAQC.25167	0	.	840121	840621	0	1	500	0
chr16	840131	840649	ZR751_Thompson.13841	0	.	840131	840649	0	1	518	0
chr16	840530	841136	B_cells_Cheung.115527	0	.	840530	841136	0	1	606	0
chr16	842155	843189	B_Cells_Pritchard.1981637	0	+	842155	843189	0	1	1034	0
chr16	981084	983058	Rinn_00024536	0	-	981084	983058	0	2	419,1194	0,780
chr16	981087	981588	CD4_Plagnol_activated.36859	0	.	981087	981588	0	1	501	0
chr16	981448	982765	CD4_Plagnol_resting.35951	0	.	981448	982765	0	1	1317	0
chr16	981801	982432	CD4_Plagnol_activated.36860	0	.	981801	982432	0	1	631	0
chr16	982182	982724	B_Cells_Pritchard.1981999	0	.	982182	982724	0	1	542	0
chr16	982340	982674	A549_Myers.47414	0	.	982340	982674	0	1	334	0
chr16	984573	986542	CD4_Plagnol_activated.36862	0	.	984573	986542	0	1	1969	0
chr16	984584	986628	CD4_Plagnol_resting.35953	0	.	984584	986628	0	1	2044	0
chr16	985437	986000	CD4_Snyder.45088	0	.	985437	986000	0	1	563	0
chr16	992334	992733	A549_Myers.47419	0	.	992334	992733	0	1	399	0
chr16	992782	994538	B_Cells_Pritchard.1982035	0	.	992782	994538	0	1	1756	0
chr16	992929	993276	A549_Myers.47420	0	.	992929	993276	0	1	347	0
chr16	993338	993797	A549_Myers.47421	0	.	993338	993797	0	1	459	0
chr16	993455	994099	B_cells_Cheung.115608	0	.	993455	994099	0	1	644	0
chr16	994175	994636	B_cells_Cheung.115609	0	.	994175	994636	0	1	461	0
chr16	997477	997883	A549_Myers.47426	0	.	997477	997883	0	1	406	0
chr16	998195	998525	A549_Myers.47427	0	.	998195	998525	0	1	330	0
chr16	1000596	1000987	A549_Myers.47428	0	.	1000596	1000987	0	1	391	0
chr16	1001451	1002259	A549_Myers.47429	0	.	1001451	1002259	0	1	808	0
chr16	1003103	1003787	A549_Myers.47431	0	.	1003103	1003787	0	1	684	0
chr16	1004486	1005273	A549_Myers.47432	0	.	1004486	1005273	0	1	787	0
chr16	1010299	1010640	A549_Myers.47433	0	.	1010299	1010640	0	1	341	0
chr16	1011395	1011899	A549_Myers.47434	0	.	1011395	1011899	0	1	504	0
chr16	1016475	1017754	B_Cells_Pritchard.1982127	0	.	1016475	1017754	0	1	1279	0
chr16	1016544	1016862	A549_Myers.47436	0	.	1016544	1016862	0	1	318	0
chr16	1016781	1017139	B_cells_Cheung.115610	0	.	1016781	1017139	0	1	358	0
chr16	1016846	1017720	brain_AmbionMAQC.25177	0	.	1016846	1017720	0	1	874	0
chr16	1017350	1017779	B_cells_Cheung.115611	0	.	1017350	1017779	0	1	429	0
chr16	1018702	1019296	BT474_Burge_Thompson.18989	0	.	1018702	1019296	0	1	594	0
chr16	1020091	1020628	B_Cells_Pritchard.1982141	0	.	1020091	1020628	0	1	537	0
chr16	1025010	1025415	A549_Myers.47438	0	.	1025010	1025415	0	1	405	0
chr16	1026076	1026518	A549_Myers.47439	0	.	1026076	1026518	0	1	442	0
chr16	1026934	1027575	A549_Myers.47440	0	.	1026934	1027575	0	1	641	0
chr16	1029540	1029992	B_Cells_Pritchard.1982179	0	.	1029540	1029992	0	1	452	0
chr16	1030113	1030569	B_Cells_Pritchard.1982181	0	.	1030113	1030569	0	1	456	0
chr16	1032860	1033252	A549_Myers.47441	0	.	1032860	1033252	0	1	392	0
chr16	1036064	1036668	A549_Myers.47445	0	.	1036064	1036668	0	1	604	0
chr16	1038611	1038949	A549_Myers.47447	0	.	1038611	1038949	0	1	338	0
chr16	1039401	1040132	A549_Myers.47448	0	.	1039401	1040132	0	1	731	0
chr16	1042536	1043217	A549_Myers.47450	0	.	1042536	1043217	0	1	681	0
chr16	1043572	1043968	A549_Myers.47451	0	.	1043572	1043968	0	1	396	0
chr16	1044639	1044991	A549_Myers.47452	0	.	1044639	1044991	0	1	352	0
chr16	1047224	1048034	A549_Myers.47455	0	.	1047224	1048034	0	1	810	0
chr16	1052847	1053259	A549_Myers.47457	0	.	1052847	1053259	0	1	412	0
chr16	1054210	1054602	B_Cells_Pritchard.1982265	0	.	1054210	1054602	0	1	392	0
chr16	1056585	1057030	A549_Myers.47472	0	.	1056585	1057030	0	1	445	0
chr16	1057607	1058211	prostate_normal.33600	0	.	1057607	1058211	0	1	604	0
chr16	1058244	1059333	prostate_carcinoma.57648	0	.	1058244	1059333	0	1	1089	0
chr16	1072577	1073207	HepG2_Caltech_ENCODE.20994	0	.	1072577	1073207	0	1	630	0
chr16	1072943	1073379	A549_Myers.47484	0	.	1072943	1073379	0	1	436	0
chr16	1073742	1074263	HeLa_polyA+_Chen.20894	0	.	1073742	1074263	0	1	521	0
chr16	1074167	1074826	HeLa_polyA-_Chen.11345	0	.	1074167	1074826	0	1	659	0
chr16	1087783	1088217	A549_Myers.47494	0	.	1087783	1088217	0	1	434	0
chr16	1090806	1091332	A549_Myers.47496	0	.	1090806	1091332	0	1	526	0
chr16	1091418	1092200	A549_Myers.47497	0	.	1091418	1092200	0	1	782	0
chr16	1092895	1093404	A549_Myers.47499	0	.	1092895	1093404	0	1	509	0
chr16	1094099	1095534	H1_polyA+.67217	0	.	1094099	1095534	0	1	1435	0
chr16	1094892	1095609	A549_Myers.47500	0	.	1094892	1095609	0	1	717	0
chr16	1095725	1096640	H1_polyA+.67218	0	.	1095725	1096640	0	1	915	0
chr16	1096071	1096671	A549_Myers.47501	0	.	1096071	1096671	0	1	600	0
chr16	1096835	1098207	H1_polyA+.67219	0	.	1096835	1098207	0	1	1372	0
chr16	1097258	1097802	A549_Myers.47502	0	.	1097258	1097802	0	1	544	0
chr16	1098747	1105151	H1_polyA+.67220	0	.	1098747	1105151	0	1	6404	0
chr16	1100507	1101548	melanoma_Garraway_short_term_cultures.39985	0	.	1100507	1101548	0	1	1041	0
chr16	1101627	1103404	HIT000325683	0	-	1101627	1103404	0	1	1777	0
chr16	1102862	1103207	A549_Myers.47506	0	.	1102862	1103207	0	1	345	0
chr16	1105277	1105906	H1_polyA+.67221	0	.	1105277	1105906	0	1	629	0
chr16	1106151	1106800	H1_polyA+.67222	0	.	1106151	1106800	0	1	649	0
chr16	1107300	1107924	H1_polyA+.67223	0	.	1107300	1107924	0	1	624	0
chr16	1108848	1109184	A549_Myers.47507	0	.	1108848	1109184	0	1	336	0
chr16	1110662	1111006	A549_Myers.47508	0	.	1110662	1111006	0	1	344	0
chr16	1113376	1124205	pHIT000089575	0	-	1113376	1124205	0	4	99,103,225,72	0,4730,6275,10757
chr16	1114715	1115102	A549_Myers.47509	0	.	1114715	1115102	0	1	387	0
chr16	1116701	1117398	A549_Myers.47511	0	.	1116701	1117398	0	1	697	0
chr16	1118053	1124205	pHIT000114987	0	-	1118053	1124205	0	3	156,225,72	0,1598,6080
chr16	1124026	1124413	A549_Myers.47514	0	.	1124026	1124413	0	1	387	0
chr16	1136253	1136674	A549_Myers.47515	0	.	1136253	1136674	0	1	421	0
chr16	1138218	1139425	prostate_carcinoma.57655	0	.	1138218	1139425	0	1	1207	0
chr16	1138293	1139056	prostate_normal.33604	0	.	1138293	1139056	0	1	763	0
chr16	1138382	1139091	A549_Myers.47516	0	.	1138382	1139091	0	1	709	0
chr16	1139493	1140355	prostate_carcinoma.57656	0	.	1139493	1140355	0	1	862	0
chr16	1279353	1280651	prostate_carcinoma.57701	0	.	1279353	1280651	0	1	1298	0
chr16	1279400	1279866	T47D_Burge_Thompson.16436	0	.	1279400	1279866	0	1	466	0
chr16	1279576	1280598	HepG2_Caltech_ENCODE.21042	0	.	1279576	1280598	0	1	1022	0
chr16	1279836	1280533	prostate_normal.33627	0	.	1279836	1280533	0	1	697	0
chr16	1279952	1280533	T47D_Burge_Thompson.16437	0	.	1279952	1280533	0	1	581	0
chr16	1279968	1280535	A549_Myers.47552	0	.	1279968	1280535	0	1	567	0
chr16	1280122	1280688	REMC_LuminalBreast.59118	0	.	1280122	1280688	0	1	566	0
chr16	1281200	1281945	REMC_LuminalBreast.59119	0	.	1281200	1281945	0	1	745	0
chr16	1281248	1282134	HepG2_Caltech_ENCODE.21044	0	.	1281248	1282134	0	1	886	0
chr16	1281287	1282552	ZR751_Thompson.13859	0	.	1281287	1282552	0	1	1265	0
chr16	1281288	1282087	MCF7_Burge_Thompson.17403	0	.	1281288	1282087	0	1	799	0
chr16	1281297	1282109	prostate_carcinoma.57703	0	.	1281297	1282109	0	1	812	0
chr16	1281305	1282075	liver_polyA+.79769	0	.	1281305	1282075	0	1	770	0
chr16	1281666	1282086	A549_Myers.47553	0	.	1281666	1282086	0	1	420	0
chr16	1284268	1289586	BT474_Burge_Thompson.18991	0	-	1284268	1289586	0	2	384,489	0,4829
chr16	1288010	1289647	REMC_LuminalBreast.59116	0	.	1288010	1289647	0	1	1637	0
chr16	1288559	1289566	HepG2_Caltech_ENCODE.21047	0	.	1288559	1289566	0	1	1007	0
chr16	1288705	1289827	REMC_MyoepithelialBreast.55174	0	.	1288705	1289827	0	1	1122	0
chr16	1288737	1289510	prostate_carcinoma.57705	0	.	1288737	1289510	0	1	773	0
chr16	1288761	1290178	liver_polyA+.79771	0	.	1288761	1290178	0	1	1417	0
chr16	1288809	1289578	MCF7_Burge_Thompson.17407	0	.	1288809	1289578	0	1	769	0
chr16	1288855	1289586	BT474_Burge_Thompson.18992	0	.	1288855	1289586	0	1	731	0
chr16	1289135	1289522	ZR751_Thompson.13863	0	.	1289135	1289522	0	1	387	0
chr16	1290611	1291245	A549_Myers.47554	0	.	1290611	1291245	0	1	634	0
chr16	1320070	1320912	prostate_carcinoma.57965	0	.	1320070	1320912	0	1	842	0
chr16	1320944	1321947	REMC_MyoepithelialBreast.55183	0	.	1320944	1321947	0	1	1003	0
chr16	1320984	1321623	A549_Myers.47587	0	.	1320984	1321623	0	1	639	0
chr16	1420902	1421533	brain_AmbionMAQC.25203	0	.	1420902	1421533	0	1	631	0
chr16	1420920	1421261	A549_Myers.47608	0	.	1420920	1421261	0	1	341	0
chr16	1421454	1421866	A549_Myers.47609	0	.	1421454	1421866	0	1	412	0
chr16	1421942	1422354	A549_Myers.47610	0	.	1421942	1422354	0	1	412	0
chr16	1467271	1467681	MIP101.39846	0	.	1467271	1467681	0	1	410	0
chr16	1469127	1469495	B_cells_Cheung.115680	0	.	1469127	1469495	0	1	368	0
chr16	1480971	1481482	B_cells_Cheung.115683	0	.	1480971	1481482	0	1	511	0
chr16	1481074	1481747	B_Cells_Pritchard.1983465	0	-	1481074	1481747	0	1	673	0
chr16	1481135	1481747	B_Cells_Pritchard.1983467	0	+	1481135	1481747	0	1	612	0
chr16	1481243	1481718	H1_polyA+.67269	0	.	1481243	1481718	0	1	475	0
chr16	1909333	1910029	A549_Myers.47710	0	.	1909333	1910029	0	1	696	0
chr16	1910473	1911161	A549_Myers.47711	0	.	1910473	1911161	0	1	688	0
chr16	1914351	1914814	MIP101.39935	0	.	1914351	1914814	0	1	463	0
chr16	1914590	1914992	A549_Myers.47714	0	.	1914590	1914992	0	1	402	0
chr16	1919653	1920329	A549_Myers.47716	0	.	1919653	1920329	0	1	676	0
chr16	1922043	1922560	A549_Myers.47717	0	.	1922043	1922560	0	1	517	0
chr16	1923367	1924125	B_cells_Cheung.115754	0	.	1923367	1924125	0	1	758	0
chr16	1925230	1926213	B_cells_Cheung.115756	0	.	1925230	1926213	0	1	983	0
chr16	1926817	1927173	H1_rRNA-depleted_UCSD_REMC.51830	0	.	1926817	1927173	0	1	356	0
chr16	1971633	1972938	HIT000092993	0	+	1971633	1972938	0	1	1305	0
chr16	2001188	2002274	REMC_LuminalBreast.59224	0	.	2001188	2002274	0	1	1086	0
chr16	2004825	2006222	H1_polyA+.67337	0	.	2004825	2006222	0	1	1397	0
chr16	2005297	2006262	B_cells_Cheung.115784	0	.	2005297	2006262	0	1	965	0
chr16	2005500	2006247	HeLa_polyA+_Chen.20947	0	.	2005500	2006247	0	1	747	0
chr16	2006337	2006980	REMC_LuminalBreast.59226	0	.	2006337	2006980	0	1	643	0
chr16	2006372	2007301	HeLa_polyA+_Chen.20946	0	.	2006372	2007301	0	1	929	0
chr16	2006418	2007298	MCF7_Burge_Thompson.17504	0	.	2006418	2007298	0	1	880	0
chr16	2006420	2007427	H1_polyA+.67338	0	.	2006420	2007427	0	1	1007	0
chr16	2006504	2007351	B_cells_Cheung.115785	0	.	2006504	2007351	0	1	847	0
chr16	2006529	2007199	melanoma_Garraway_short_term_cultures.40114	0	.	2006529	2007199	0	1	670	0
chr16	2006535	2007065	MB435_Burge.23863	0	.	2006535	2007065	0	1	530	0
chr16	2006541	2007052	H9_polyA+.26096	0	.	2006541	2007052	0	1	511	0
chr16	2006637	2007302	A549_Myers.49555	0	.	2006637	2007302	0	1	665	0
chr16	2011672	2014374	A549_Myers.49558	0	-	2011672	2014374	0	2	526,254	0,2448
chr16	2012641	2014374	A549_Myers.49559	0	.	2012641	2014374	0	1	1733	0
chr16	2013275	2014561	MCF7_Burge_Thompson.17506	0	.	2013275	2014561	0	1	1286	0
chr16	2013774	2014698	HepG2_Caltech_ENCODE.21693	0	.	2013774	2014698	0	1	924	0
chr16	2013836	2014409	H1_polyA+.67341	0	.	2013836	2014409	0	1	573	0
chr16	2013938	2014614	prostate_normal.34045	0	.	2013938	2014614	0	1	676	0
chr16	2127050	2129581	REMC_BreastStem.30037	0	.	2127050	2129581	0	1	2531	0
chr16	2130725	2132753	REMC_LuminalBreast.59254	0	.	2130725	2132753	0	1	2028	0
chr16	2130739	2132692	REMC_BreastStem.30038	0	.	2130739	2132692	0	1	1953	0
chr16	2132884	2133629	REMC_MyoepithelialBreast.55264	0	.	2132884	2133629	0	1	745	0
chr16	2133054	2135080	REMC_BreastStem.30039	0	.	2133054	2135080	0	1	2026	0
chr16	2134023	2134901	B_Cells_Pritchard.1984217	0	.	2134023	2134901	0	1	878	0
chr16	2134169	2134862	prostate_carcinoma.57803	0	.	2134169	2134862	0	1	693	0
chr16	2135546	2136275	B_cells_Cheung.115837	0	.	2135546	2136275	0	1	729	0
chr16	2135592	2136833	REMC_BreastStem.30040	0	.	2135592	2136833	0	1	1241	0
chr16	2135622	2136228	prostate_carcinoma.57908	0	.	2135622	2136228	0	1	606	0
chr16	2135638	2136351	REMC_LuminalBreast.59256	0	.	2135638	2136351	0	1	713	0
chr16	2136414	2137039	B_Cells_Pritchard.1984223	0	-	2136414	2137039	0	1	625	0
chr16	2136751	2137488	prostate_carcinoma.57909	0	.	2136751	2137488	0	1	737	0
chr16	2209958	2211001	REMC_LuminalBreast.59268	0	.	2209958	2211001	0	1	1043	0
chr16	2209998	2210344	B_cells_Cheung.115904	0	.	2209998	2210344	0	1	346	0
chr16	2260490	2261580	brain_AmbionMAQC.25595	0	.	2260490	2261580	0	1	1090	0
chr16	2261018	2261659	HeLa_polyA+_Chen.20993	0	.	2261018	2261659	0	1	641	0
chr16	2261026	2261498	BT474_Burge_Thompson.19284	0	.	2261026	2261498	0	1	472	0
chr16	2262384	2263113	HepG2_Caltech_ENCODE.21115	0	.	2262384	2263113	0	1	729	0
chr16	2456689	2459670	B_cells_Cheung.115910	0	.	2456689	2459670	0	1	2981	0
chr16	2456899	2457770	prostate_carcinoma.57861	0	.	2456899	2457770	0	1	871	0
chr16	2456959	2457423	A549_Myers.47897	0	.	2456959	2457423	0	1	464	0
chr16	2457007	2457513	HeLa_polyA+_Chen.21006	0	.	2457007	2457513	0	1	506	0
chr16	2457792	2458644	BT20_Thompson.12377	0	.	2457792	2458644	0	1	852	0
chr16	2457849	2458838	HeLa_polyA+_Chen.21007	0	.	2457849	2458838	0	1	989	0
chr16	2458047	2458738	MIP101.39950	0	.	2458047	2458738	0	1	691	0
chr16	2458080	2458823	prostate_carcinoma.57862	0	.	2458080	2458823	0	1	743	0
chr16	2458223	2458750	MB435_Burge.23987	0	.	2458223	2458750	0	1	527	0
chr16	2458948	2459435	prostate_carcinoma.57863	0	.	2458948	2459435	0	1	487	0
chr16	2458998	2459425	MB435_Burge.23988	0	.	2458998	2459425	0	1	427	0
chr16	2459690	2460349	prostate_normal.33794	0	.	2459690	2460349	0	1	659	0
chr16	2496948	2498248	brain_AmbionMAQC.25374	0	.	2496948	2498248	0	1	1300	0
chr16	2497807	2498297	CD4_Plagnol_activated.37061	0	.	2497807	2498297	0	1	490	0
chr16	2497812	2498283	MIP101.39960	0	.	2497812	2498283	0	1	471	0
chr16	2497928	2498367	HepG2_Caltech_ENCODE.21149	0	.	2497928	2498367	0	1	439	0
chr16	2501278	2501765	A549_Myers.47831	0	.	2501278	2501765	0	1	487	0
chr16	2502222	2502562	B_cells_Cheung.115930	0	.	2502222	2502562	0	1	340	0
chr16	2522802	2523241	brain_AmbionMAQC.25347	0	.	2522802	2523241	0	1	439	0
chr16	2523493	2526784	REMC_MyoepithelialBreast.55322	0	.	2523493	2526784	0	1	3291	0
chr16	2525030	2526653	B_Cells_Pritchard.1984853	0	-	2525030	2526653	0	1	1623	0
chr16	2525429	2526778	B_cells_Cheung.115940	0	.	2525429	2526778	0	1	1349	0
chr16	2525578	2526547	REMC_BreastStem.30069	0	.	2525578	2526547	0	1	969	0
chr16	2700389	2700696	A549_Myers.47873	0	.	2700389	2700696	0	1	307	0
chr16	2700788	2701104	A549_Myers.47874	0	.	2700788	2701104	0	1	316	0
chr16	2710782	2711264	B_Cells_Pritchard.1985217	0	+	2710782	2711264	0	1	482	0
chr16	2715466	2716394	REMC_LuminalBreast.59367	0	.	2715466	2716394	0	1	928	0
chr16	2716765	2717951	REMC_LuminalBreast.59368	0	.	2716765	2717951	0	1	1186	0
chr16	2730715	2732282	REMC_LuminalBreast.61841	0	.	2730715	2732282	0	1	1567	0
chr16	2730946	2731878	B_cells_Cheung.116026	0	.	2730946	2731878	0	1	932	0
chr16	2731018	2731780	BT474_Burge_Thompson.19906	0	.	2731018	2731780	0	1	762	0
chr16	2732030	2734573	H1_polyA+.70002	0	.	2732030	2734573	0	1	2543	0
chr16	2732317	2733821	MCF7_Burge_Thompson.17787	0	.	2732317	2733821	0	1	1504	0
chr16	2732325	2732841	T47D_Burge_Thompson.16618	0	.	2732325	2732841	0	1	516	0
chr16	2732338	2732886	ZR751_Thompson.14027	0	.	2732338	2732886	0	1	548	0
chr16	2732346	2734492	B_Cells_Pritchard.2047299	0	+	2732346	2734492	0	1	2146	0
chr16	2732346	2733715	B_Cells_Pritchard.2047301	0	-	2732346	2733715	0	1	1369	0
chr16	2732403	2732832	HeLa_polyA+_Chen.21156	0	.	2732403	2732832	0	1	429	0
chr16	2732417	2733715	testes_Burge.30395	0	.	2732417	2733715	0	1	1298	0
chr16	2732430	2733301	BT474_Burge_Thompson.19907	0	.	2732430	2733301	0	1	871	0
chr16	2733240	2733784	liver_polyA+.83307	0	.	2733240	2733784	0	1	544	0
chr16	2733337	2734125	HeLa_polyA+_Chen.21158	0	.	2733337	2734125	0	1	788	0
chr16	2733403	2734041	BT474_Burge_Thompson.19908	0	.	2733403	2734041	0	1	638	0
chr16	2734580	2736322	B_cells_Cheung.117361	0	.	2734580	2736322	0	1	1742	0
chr16	2734733	2736273	H1_polyA+.70004	0	.	2734733	2736273	0	1	1540	0
chr16	2734749	2736308	prostate_carcinoma.59734	0	.	2734749	2736308	0	1	1559	0
chr16	2734769	2735899	T47D_Burge_Thompson.16619	0	.	2734769	2735899	0	1	1130	0
chr16	2734846	2735906	CD4_Plagnol_activated.37111	0	.	2734846	2735906	0	1	1060	0
chr16	2735495	2735942	BT474_Burge_Thompson.19909	0	.	2735495	2735942	0	1	447	0
chr16	2738820	2740531	T47D_Burge_Thompson.16620	0	.	2738820	2740531	0	1	1711	0
chr16	2738840	2739562	CD4_Plagnol_activated.37112	0	.	2738840	2739562	0	1	722	0
chr16	2738906	2739994	K562.27719	0	.	2738906	2739994	0	1	1088	0
chr16	2738917	2741130	melanoma_Garraway_short_term_cultures.40241	0	.	2738917	2741130	0	1	2213	0
chr16	2738953	2741202	BT20_Thompson.12408	0	.	2738953	2741202	0	1	2249	0
chr16	2738954	2739727	BT474_Burge_Thompson.19910	0	.	2738954	2739727	0	1	773	0
chr16	2738994	2739589	liver_polyA+.83308	0	.	2738994	2739589	0	1	595	0
chr16	2739336	2740577	B_Cells_Pritchard.2047303	0	+	2739336	2740577	0	1	1241	0
chr16	2739344	2741048	HeLa_polyA+_Chen.21161	0	.	2739344	2741048	0	1	1704	0
chr16	2739379	2740025	NEC_from_H9.43672	0	.	2739379	2740025	0	1	646	0
chr16	2739859	2740966	ZR751_Thompson.14128	0	.	2739859	2740966	0	1	1107	0
chr16	2767370	2770576	HIT000013065	0	+	2767370	2770576	0	1	3206	0
chr16	2768710	2769852	CD4_Plagnol_resting.36227	0	.	2768710	2769852	0	1	1142	0
chr16	2768741	2769551	A549_Myers.48365	0	.	2768741	2769551	0	1	810	0
chr16	2768764	2769221	melanoma_Garraway_short_term_cultures.40247	0	.	2768764	2769221	0	1	457	0
chr16	2768835	2770534	K562.26156	0	.	2768835	2770534	0	1	1699	0
chr16	2768965	2769938	HeLa_polyA+_Chen.21178	0	.	2768965	2769938	0	1	973	0
chr16	2769054	2769431	NEC_from_H9.43694	0	.	2769054	2769431	0	1	377	0
chr16	2769136	2769897	BT20_Thompson.12415	0	.	2769136	2769897	0	1	761	0
chr16	2769394	2769877	CD4_Plagnol_activated.37460	0	.	2769394	2769877	0	1	483	0
chr16	2769483	2769907	NEC_from_H9.43695	0	.	2769483	2769907	0	1	424	0
chr16	2815995	2816636	REMC_LuminalBreast.59382	0	.	2815995	2816636	0	1	641	0
chr16	2816600	2819018	HeLa_polyA+_Chen.21260	0	.	2816600	2819018	0	1	2418	0
chr16	2825074	2826866	MCF7_Burge_Thompson.17697	0	.	2825074	2826866	0	1	1792	0
chr16	2825334	2827971	BT20_Thompson.12419	0	.	2825334	2827971	0	1	2637	0
chr16	2825336	2827942	REMC_LuminalBreast.59386	0	.	2825336	2827942	0	1	2606	0
chr16	2825604	2826815	prostate_normal.33870	0	.	2825604	2826815	0	1	1211	0
chr16	2825695	2827791	HeLa_polyA+_Chen.21183	0	.	2825695	2827791	0	1	2096	0
chr16	2825856	2826826	T47D_Burge_Thompson.16603	0	.	2825856	2826826	0	1	970	0
chr16	2825932	2826800	ZR751_Thompson.14044	0	.	2825932	2826800	0	1	868	0
chr16	2826612	2827793	REMC_MyoepithelialBreast.55382	0	.	2826612	2827793	0	1	1181	0
chr16	2826730	2827908	BT474_Burge_Thompson.19201	0	.	2826730	2827908	0	1	1178	0
chr16	2826946	2827933	T47D_Burge_Thompson.16604	0	.	2826946	2827933	0	1	987	0
chr16	2826973	2827969	ZR751_Thompson.14045	0	.	2826973	2827969	0	1	996	0
chr16	2827034	2827588	melanoma_Garraway_short_term_cultures.40253	0	.	2827034	2827588	0	1	554	0
chr16	2827039	2827347	B_cells_Cheung.116042	0	.	2827039	2827347	0	1	308	0
chr16	2828268	2829507	T47D_Burge_Thompson.16605	0	.	2828268	2829507	0	1	1239	0
chr16	2828371	2829537	B_cells_Cheung.116043	0	.	2828371	2829537	0	1	1166	0
chr16	2828388	2829544	HeLa_polyA+_Chen.21184	0	.	2828388	2829544	0	1	1156	0
chr16	2828764	2829336	A549_Myers.47911	0	.	2828764	2829336	0	1	572	0
chr16	2833480	2833956	prostate_normal.33871	0	.	2833480	2833956	0	1	476	0
chr16	2833571	2834132	B_cells_Cheung.116046	0	.	2833571	2834132	0	1	561	0
chr16	2840175	2840637	REMC_MyoepithelialBreast.55388	0	.	2840175	2840637	0	1	462	0
chr16	2849529	2851900	BT20_Thompson.12440	0	.	2849529	2851900	0	1	2371	0
chr16	2849992	2850300	MDAMB231_Thompson.13111	0	.	2849992	2850300	0	1	308	0
chr16	2850095	2852103	BT474_Burge_Thompson.19206	0	.	2850095	2852103	0	1	2008	0
chr16	2850358	2852106	ZR751_Thompson.14062	0	.	2850358	2852106	0	1	1748	0
chr16	2850511	2852090	H1_polyA+.67461	0	.	2850511	2852090	0	1	1579	0
chr16	2850553	2851845	MDAMB231_Thompson.13110	0	.	2850553	2851845	0	1	1292	0
chr16	2850659	2851913	REMC_MyoepithelialBreast.55392	0	.	2850659	2851913	0	1	1254	0
chr16	2850828	2851841	MDAMB468_Thompson.14025	0	.	2850828	2851841	0	1	1013	0
chr16	2857987	2858733	A549_Myers.47920	0	.	2857987	2858733	0	1	746	0
chr16	2858285	2858845	B_Cells_Pritchard.1985519	0	-	2858285	2858845	0	1	560	0
chr16	2890425	2891779	T47D_Burge_Thompson.16608	0	.	2890425	2891779	0	1	1354	0
chr16	2890428	2891694	CD4_Plagnol_activated.37127	0	.	2890428	2891694	0	1	1266	0
chr16	2890504	2891734	MDAMB468_Thompson.14026	0	.	2890504	2891734	0	1	1230	0
chr16	2890512	2895674	B_Cells_Pritchard.1985605	0	-	2890512	2895674	0	2	1255,2164	0,2998
chr16	2890528	2891549	MCF10A_Thompson.12677	0	.	2890528	2891549	0	1	1021	0
chr16	2890532	2891448	REMC_MyoepithelialBreast.55395	0	.	2890532	2891448	0	1	916	0
chr16	2890535	2891342	CD4_Plagnol_resting.36236	0	.	2890535	2891342	0	1	807	0
chr16	2890535	2891763	melanoma_Garraway_short_term_cultures.40258	0	.	2890535	2891763	0	1	1228	0
chr16	2890544	2891698	H9_polyA+.26186	0	.	2890544	2891698	0	1	1154	0
chr16	2890657	2891302	MeWo_Garraway.20907	0	.	2890657	2891302	0	1	645	0
chr16	2890830	2891488	MDAMB231_Thompson.13112	0	.	2890830	2891488	0	1	658	0
chr16	2890842	2891779	HepG2_Caltech_ENCODE.21182	0	.	2890842	2891779	0	1	937	0
chr16	2890849	2891464	K562.26177	0	.	2890849	2891464	0	1	615	0
chr16	2890882	2891532	REMC_BreastStem.30105	0	.	2890882	2891532	0	1	650	0
chr16	2891261	2895387	REMC_MyoepithelialBreast.55397	0	+	2891261	2895387	0	2	33,1325	0,2801
chr16	2893246	2895578	REMC_LuminalBreast.59395	0	.	2893246	2895578	0	1	2332	0
chr16	2893436	2895387	REMC_MyoepithelialBreast.55396	0	.	2893436	2895387	0	1	1951	0
chr16	2893577	2895716	B_cells_Cheung.116055	0	.	2893577	2895716	0	1	2139	0
chr16	2893689	2895653	HepG2_Caltech_ENCODE.21183	0	.	2893689	2895653	0	1	1964	0
chr16	2893845	2895568	T47D_Burge_Thompson.16609	0	.	2893845	2895568	0	1	1723	0
chr16	2893847	2895462	MCF7_Burge_Thompson.17710	0	.	2893847	2895462	0	1	1615	0
chr16	2893849	2895672	brain_AmbionMAQC.25412	0	.	2893849	2895672	0	1	1823	0
chr16	2893875	2895578	MIP101.39994	0	.	2893875	2895578	0	1	1703	0
chr16	2893885	2895064	ZR751_Thompson.14050	0	.	2893885	2895064	0	1	1179	0
chr16	2894004	2894761	H9_polyA+.26187	0	.	2894004	2894761	0	1	757	0
chr16	2894384	2895385	HeLa_polyA-_Chen.11453	0	.	2894384	2895385	0	1	1001	0
chr16	2894432	2894735	MB435_Burge.24056	0	.	2894432	2894735	0	1	303	0
chr16	2894501	2895590	prostate_normal.33881	0	.	2894501	2895590	0	1	1089	0
chr16	2894563	2895340	REMC_BreastStem.30106	0	.	2894563	2895340	0	1	777	0
chr16	2894577	2894949	H1_rRNA-depleted_UCSD_REMC.52061	0	.	2894577	2894949	0	1	372	0
chr16	2894603	2895680	BT474_Burge_Thompson.19212	0	.	2894603	2895680	0	1	1077	0
chr16	2944111	2944526	B_cells_Cheung.116071	0	.	2944111	2944526	0	1	415	0
chr16	2944617	2945145	B_cells_Cheung.116072	0	.	2944617	2945145	0	1	528	0
chr16	2944727	2945302	MCF7_Burge_Thompson.17805	0	.	2944727	2945302	0	1	575	0
chr16	2945707	2947229	B_cells_Cheung.116073	0	.	2945707	2947229	0	1	1522	0
chr16	2947366	2947974	brain_AmbionMAQC.25421	0	.	2947366	2947974	0	1	608	0
chr16	2947455	2947915	B_Cells_Pritchard.1985797	0	.	2947455	2947915	0	1	460	0
chr16	2950349	2951324	B_cells_Cheung.116076	0	.	2950349	2951324	0	1	975	0
chr16	2950369	2951153	B_Cells_Pritchard.1985815	0	-	2950369	2951153	0	1	784	0
chr16	2951539	2952842	B_cells_Cheung.116078	0	.	2951539	2952842	0	1	1303	0
chr16	2951549	2952421	A549_Myers.47935	0	.	2951549	2952421	0	1	872	0
chr16	2951603	2952679	ZR751_Thompson.14047	0	.	2951603	2952679	0	1	1076	0
chr16	2952210	2952827	prostate_carcinoma.57961	0	.	2952210	2952827	0	1	617	0
chr16	3351580	3352018	B_cells_Cheung.116209	0	.	3351580	3352018	0	1	438	0
chr16	3351653	3351988	B_Cells_Pritchard.1986933	0	.	3351653	3351988	0	1	335	0
chr16	3354866	3355347	A549_Myers.48030	0	.	3354866	3355347	0	1	481	0
chr16	3363506	3364334	REMC_LuminalBreast.59483	0	.	3363506	3364334	0	1	828	0
chr16	3364127	3366019	B_cells_Cheung.116220	0	.	3364127	3366019	0	1	1892	0
chr16	3364941	3365987	melanoma_Garraway_short_term_cultures.40345	0	.	3364941	3365987	0	1	1046	0
chr16	3365658	3366161	CD4_Plagnol_resting.36333	0	.	3365658	3366161	0	1	503	0
chr16	3366234	3369932	B_cells_Cheung.116221	0	.	3366234	3369932	0	1	3698	0
chr16	3368523	3369782	REMC_LuminalBreast.59486	0	.	3368523	3369782	0	1	1259	0
chr16	3369280	3369922	T47D_Burge_Thompson.16667	0	.	3369280	3369922	0	1	642	0
chr16	3369503	3369953	B_Cells_Pritchard.1987083	0	.	3369503	3369953	0	1	450	0
chr16	3403119	3404488	B_cells_Cheung.116234	0	.	3403119	3404488	0	1	1369	0
chr16	3403122	3404435	H1_polyA+.67546	0	.	3403122	3404435	0	1	1313	0
chr16	3403127	3403464	BT474_Burge_Thompson.19272	0	.	3403127	3403464	0	1	337	0
chr16	3403673	3404045	prostate_normal.34003	0	.	3403673	3404045	0	1	372	0
chr16	3403864	3404984	MIP101.40065	0	-	3403864	3404984	0	2	311,254	0,866
chr16	3405107	3405710	CD4_Plagnol_resting.36357	0	.	3405107	3405710	0	1	603	0
chr16	3405249	3408362	MIP101.40066	0	+	3405249	3408362	0	2	1058,207	0,2906
chr16	3412362	3413280	B_cells_Cheung.116240	0	.	3412362	3413280	0	1	918	0
chr16	3421100	3422148	prostate_normal.34004	0	.	3421100	3422148	0	1	1048	0
chr16	3421383	3422198	B_cells_Cheung.116251	0	.	3421383	3422198	0	1	815	0
chr16	3421765	3422316	REMC_BreastStem.30131	0	.	3421765	3422316	0	1	551	0
chr16	3479392	3480131	B_cells_Cheung.116261	0	.	3479392	3480131	0	1	739	0
chr16	3480399	3481548	B_cells_Cheung.116262	0	.	3480399	3481548	0	1	1149	0
chr16	3480438	3481837	REMC_MyoepithelialBreast.55454	0	.	3480438	3481837	0	1	1399	0
chr16	3480506	3481759	B_Cells_Pritchard.1987185	0	+	3480506	3481759	0	1	1253	0
chr16	3480862	3481424	A549_Myers.48064	0	.	3480862	3481424	0	1	562	0
chr16	3487553	3488668	REMC_LuminalBreast.59512	0	.	3487553	3488668	0	1	1115	0
chr16	3568636	3568982	A549_Myers.48076	0	.	3568636	3568982	0	1	346	0
chr16	3602604	3606573	HepG2_Caltech_ENCODE.21272	0	.	3602604	3606573	0	1	3969	0
chr16	3603208	3603867	HeLa_polyA+_Chen.21279	0	.	3603208	3603867	0	1	659	0
chr16	3604178	3610975	B_cells_Cheung.116579	0	.	3604178	3610975	0	1	6797	0
chr16	3604353	3606341	K562.26402	0	.	3604353	3606341	0	1	1988	0
chr16	3605064	3606676	H1_polyA+.67594	0	.	3605064	3606676	0	1	1612	0
chr16	3605143	3606522	HeLa_polyA+_Chen.21281	0	.	3605143	3606522	0	1	1379	0
chr16	3619790	3620490	B_cells_Cheung.116586	0	.	3619790	3620490	0	1	700	0
chr16	3631808	3632423	A549_Myers.48094	0	.	3631808	3632423	0	1	615	0
chr16	3893002	3912632	pHIT000115206	0	-	3893002	3912632	0	3	228,109,281	0,13123,19349
chr16	3920004	3937928	Rinn_00024948	0	-	3920004	3937928	0	3	1719,117,1775	0,13256,16149
chr16	3933167	3942466	Rinn_00024563	0	-	3933167	3942466	0	4	210,2678,831,327	0,2986,7105,8972
chr16	3935946	3942466	Rinn_00024565	0	-	3935946	3942466	0	3	2885,831,327	0,4326,6193
chr16	3936164	3937360	MDAMB231_Thompson.13189	0	.	3936164	3937360	0	1	1196	0
chr16	3936182	3937288	prostate_carcinoma.58044	0	.	3936182	3937288	0	1	1106	0
chr16	3936404	3937228	H1_polyA+.67649	0	.	3936404	3937228	0	1	824	0
chr16	3939986	3941201	melanoma_Garraway_short_term_cultures.40402	0	.	3939986	3941201	0	1	1215	0
chr16	4132911	4133617	T47D_Burge_Thompson.16726	0	.	4132911	4133617	0	1	706	0
chr16	4154596	4155157	H1_polyA+.67654	0	.	4154596	4155157	0	1	561	0
chr16	4167899	4169413	H1_polyA+.67662	0	.	4167899	4169413	0	1	1514	0
chr16	4169718	4175679	H1_polyA+.67663	0	-	4169718	4175679	0	2	595,2285	0,3676
chr16	4169917	4175642	REMC_LuminalBreast.59558	0	-	4169917	4175642	0	2	396,2248	0,3477
chr16	4170068	4173669	Rinn_00024566	0	-	4170068	4173669	0	2	245,276	0,3325
chr16	4170087	4175612	MIP101.40165	0	-	4170087	4175612	0	2	226,2218	0,3307
chr16	4171582	4172485	H1_polyA+.67665	0	.	4171582	4172485	0	1	903	0
chr16	4173047	4175642	REMC_LuminalBreast.59559	0	.	4173047	4175642	0	1	2595	0
chr16	4173084	4175679	H1_polyA+.67664	0	.	4173084	4175679	0	1	2595	0
chr16	4173197	4174037	HeLa_polyA-_Chen.11492	0	.	4173197	4174037	0	1	840	0
chr16	4173215	4174011	B_Cells_Pritchard.1988715	0	.	4173215	4174011	0	1	796	0
chr16	4173231	4173940	REMC_MyoepithelialBreast.55507	0	.	4173231	4173940	0	1	709	0
chr16	4173238	4175612	MIP101.40166	0	.	4173238	4175612	0	1	2374	0
chr16	4173242	4173798	B_cells_Cheung.116415	0	.	4173242	4173798	0	1	556	0
chr16	4173301	4174072	BT474_Burge_Thompson.19326	0	.	4173301	4174072	0	1	771	0
chr16	4173320	4173926	H9_polyA-_Chen.8441	0	.	4173320	4173926	0	1	606	0
chr16	4173357	4175245	prostate_normal.34062	0	.	4173357	4175245	0	1	1888	0
chr16	4173369	4174985	A549_Myers.48148	0	.	4173369	4174985	0	1	1616	0
chr16	4173370	4175275	prostate_carcinoma.58056	0	.	4173370	4175275	0	1	1905	0
chr16	4173371	4175261	MCF7_Burge_Thompson.17801	0	.	4173371	4175261	0	1	1890	0
chr16	4173785	4175216	T47D_Burge_Thompson.16728	0	.	4173785	4175216	0	1	1431	0
chr16	4174027	4174904	BT20_Thompson.12504	0	.	4174027	4174904	0	1	877	0
chr16	4174048	4175592	REMC_MyoepithelialBreast.55508	0	.	4174048	4175592	0	1	1544	0
chr16	4174157	4174972	B_Cells_Pritchard.1988717	0	.	4174157	4174972	0	1	815	0
chr16	4176289	4177981	REMC_LuminalBreast.59560	0	.	4176289	4177981	0	1	1692	0
chr16	4238018	4240474	BT474_Burge_Thompson.19328	0	.	4238018	4240474	0	1	2456	0
chr16	4238271	4240474	BT474_Burge_Thompson.19329	0	-	4238271	4240474	0	2	24,1909	0,294
chr16	4239169	4240876	H1_polyA+.67671	0	.	4239169	4240876	0	1	1707	0
chr16	4239325	4240526	REMC_LuminalBreast.59570	0	.	4239325	4240526	0	1	1201	0
chr16	4239493	4240413	MCF7_Burge_Thompson.17815	0	.	4239493	4240413	0	1	920	0
chr16	4239559	4240515	T47D_Burge_Thompson.16731	0	.	4239559	4240515	0	1	956	0
chr16	4240086	4240406	liver_polyA+.80481	0	.	4240086	4240406	0	1	320	0
chr16	4243386	4243782	CD4_Plagnol_resting.36438	0	.	4243386	4243782	0	1	396	0
chr16	4243400	4243793	T47D_Burge_Thompson.16733	0	.	4243400	4243793	0	1	393	0
chr16	4243416	4243782	CD4_Plagnol_activated.37388	0	.	4243416	4243782	0	1	366	0
chr16	4243441	4244206	A549_Myers.48151	0	.	4243441	4244206	0	1	765	0
chr16	4243454	4243790	HepG2_Caltech_ENCODE.21294	0	.	4243454	4243790	0	1	336	0
chr16	4265070	4265527	HepG2_Caltech_ENCODE.21299	0	.	4265070	4265527	0	1	457	0
chr16	4265080	4265696	B_cells_Cheung.116420	0	.	4265080	4265696	0	1	616	0
chr16	4265176	4265484	CD4_Plagnol_activated.37389	0	.	4265176	4265484	0	1	308	0
chr16	4265782	4266231	CD4_Plagnol_activated.37390	0	.	4265782	4266231	0	1	449	0
chr16	4265788	4266228	H9_polyA+.26310	0	.	4265788	4266228	0	1	440	0
chr16	4265789	4266781	H1_polyA+.67676	0	.	4265789	4266781	0	1	992	0
chr16	4265794	4266223	CD4_Plagnol_resting.36446	0	.	4265794	4266223	0	1	429	0
chr16	4265802	4266316	B_cells_Cheung.116421	0	.	4265802	4266316	0	1	514	0
chr16	4269496	4272699	H1_polyA+.67679	0	.	4269496	4272699	0	1	3203	0
chr16	4271231	4273063	B_cells_Cheung.116427	0	.	4271231	4273063	0	1	1832	0
chr16	4273174	4275893	H1_polyA+.67680	0	.	4273174	4275893	0	1	2719	0
chr16	4274588	4275862	B_cells_Cheung.116431	0	.	4274588	4275862	0	1	1274	0
chr16	4274681	4275850	B_Cells_Pritchard.1989937	0	+	4274681	4275850	0	1	1169	0
chr16	4276125	4276865	H1_polyA+.67681	0	.	4276125	4276865	0	1	740	0
chr16	4278512	4278853	A549_Myers.48164	0	.	4278512	4278853	0	1	341	0
chr16	4279205	4279739	B_cells_Cheung.116435	0	.	4279205	4279739	0	1	534	0
chr16	4280242	4281239	H1_polyA+.67683	0	.	4280242	4281239	0	1	997	0
chr16	4280306	4281400	B_cells_Cheung.116437	0	.	4280306	4281400	0	1	1094	0
chr16	4281717	4282805	H1_polyA+.67684	0	.	4281717	4282805	0	1	1088	0
chr16	4282207	4282864	B_cells_Cheung.116440	0	.	4282207	4282864	0	1	657	0
chr16	4283020	4284675	B_cells_Cheung.116441	0	.	4283020	4284675	0	1	1655	0
chr16	4283334	4284077	REMC_LuminalBreast.59573	0	.	4283334	4284077	0	1	743	0
chr16	4283358	4284719	H1_polyA+.67685	0	.	4283358	4284719	0	1	1361	0
chr16	4283368	4283693	A549_Myers.48165	0	.	4283368	4283693	0	1	325	0
chr16	4283746	4285490	A549_Myers.48166	0	-	4283746	4285490	0	2	492,65	0,1679
chr16	4286814	4287979	H1_polyA+.67687	0	.	4286814	4287979	0	1	1165	0
chr16	4286860	4298157	B_Cells_Pritchard.1989951	0	+	4286860	4298157	0	3	1973,2058,4709	0,4429,6588
chr16	4286968	4287992	B_cells_Cheung.116445	0	.	4286968	4287992	0	1	1024	0
chr16	4288091	4290456	B_cells_Cheung.116446	0	.	4288091	4290456	0	1	2365	0
chr16	4288102	4297627	H1_polyA+.67688	0	.	4288102	4297627	0	1	9525	0
chr16	4288737	4297625	B_Cells_Pritchard.1989953	0	-	4288737	4297625	0	13	802,135,112,280,232,287,241,24,632,452,286,254,1531	0,802,2238,2359,2640,3254,3762,5163,5264,5950,6620,6916,7357
chr16	4288921	4289592	T47D_Burge_Thompson.16736	0	.	4288921	4289592	0	1	671	0
chr16	4289131	4290111	REMC_MyoepithelialBreast.55515	0	.	4289131	4290111	0	1	980	0
chr16	4290523	4292760	B_cells_Cheung.116447	0	.	4290523	4292760	0	1	2237	0
chr16	4290947	4292253	K562.26299	0	.	4290947	4292253	0	1	1306	0
chr16	4291257	4291869	HeLa_polyA+_Chen.21298	0	.	4291257	4291869	0	1	612	0
chr16	4292984	4297626	B_cells_Cheung.116448	0	.	4292984	4297626	0	1	4642	0
chr16	4293490	4294662	REMC_LuminalBreast.59576	0	.	4293490	4294662	0	1	1172	0
chr16	4293532	4295096	melanoma_Garraway_short_term_cultures.40420	0	.	4293532	4295096	0	1	1564	0
chr16	4293551	4295633	K562.26302	0	.	4293551	4295633	0	1	2082	0
chr16	4293852	4294501	H9_polyA+.26315	0	.	4293852	4294501	0	1	649	0
chr16	4293968	4294809	HeLa_polyA+_Chen.21301	0	.	4293968	4294809	0	1	841	0
chr16	4293969	4295142	prostate_carcinoma.58077	0	.	4293969	4295142	0	1	1173	0
chr16	4294039	4294482	A549_Myers.48173	0	.	4294039	4294482	0	1	443	0
chr16	4294060	4294818	REMC_MyoepithelialBreast.55516	0	.	4294060	4294818	0	1	758	0
chr16	4295384	4296871	HeLa_polyA+_Chen.21302	0	.	4295384	4296871	0	1	1487	0
chr16	4295388	4296692	REMC_LuminalBreast.59577	0	.	4295388	4296692	0	1	1304	0
chr16	4295413	4297610	REMC_MyoepithelialBreast.55517	0	.	4295413	4297610	0	1	2197	0
chr16	4295686	4296389	HepG2_Caltech_ENCODE.21304	0	.	4295686	4296389	0	1	703	0
chr16	4295803	4297618	K562.26303	0	.	4295803	4297618	0	1	1815	0
chr16	4295812	4296342	H9_polyA-_Chen.8445	0	.	4295812	4296342	0	1	530	0
chr16	4295976	4297717	H9_polyA+.26316	0	.	4295976	4297717	0	1	1741	0
chr16	4295987	4297767	A549_Myers.48170	0	.	4295987	4297767	0	1	1780	0
chr16	4295993	4296588	prostate_carcinoma.58082	0	.	4295993	4296588	0	1	595	0
chr16	4296111	4296991	prostate_normal.34076	0	.	4296111	4296991	0	1	880	0
chr16	4296292	4297025	T47D_Burge_Thompson.16738	0	.	4296292	4297025	0	1	733	0
chr16	4296501	4297575	HeLa_polyA-_Chen.11497	0	.	4296501	4297575	0	1	1074	0
chr16	4296588	4297602	prostate_carcinoma.58083	0	.	4296588	4297602	0	1	1014	0
chr16	4296634	4297592	HepG2_Caltech_ENCODE.21303	0	.	4296634	4297592	0	1	958	0
chr16	4296717	4297544	CD4_Plagnol_resting.36447	0	.	4296717	4297544	0	1	827	0
chr16	4297126	4297694	prostate_normal.34077	0	.	4297126	4297694	0	1	568	0
chr16	4297175	4297555	testes_Burge.30592	0	.	4297175	4297555	0	1	380	0
chr16	4297866	4298485	H1_polyA+.67689	0	.	4297866	4298485	0	1	619	0
chr16	4532706	4533425	H1_polyA+.68434	0	.	4532706	4533425	0	1	719	0
chr16	4542483	4544202	H1_polyA+.68441	0	.	4542483	4544202	0	1	1719	0
chr16	4591423	4592160	MCF7_Burge_Thompson.17852	0	.	4591423	4592160	0	1	737	0
chr16	4591896	4592227	H9_polyA+.26351	0	.	4591896	4592227	0	1	331	0
chr16	4591905	4592709	brain_AmbionMAQC.25620	0	.	4591905	4592709	0	1	804	0
chr16	4592051	4593360	REMC_MyoepithelialBreast.55590	0	.	4592051	4593360	0	1	1309	0
chr16	4592389	4593092	prostate_carcinoma.58155	0	.	4592389	4593092	0	1	703	0
chr16	4593531	4594967	prostate_carcinoma.58156	0	.	4593531	4594967	0	1	1436	0
chr16	4593539	4594776	brain_AmbionMAQC.25621	0	.	4593539	4594776	0	1	1237	0
chr16	4593558	4595016	melanoma_Garraway_short_term_cultures.40470	0	.	4593558	4595016	0	1	1458	0
chr16	4593566	4594234	MCF7_Burge_Thompson.17853	0	.	4593566	4594234	0	1	668	0
chr16	4593591	4595019	HepG2_Caltech_ENCODE.21314	0	.	4593591	4595019	0	1	1428	0
chr16	4593600	4593910	BT474_Burge_Thompson.19358	0	.	4593600	4593910	0	1	310	0
chr16	4593690	4595040	B_cells_Cheung.116519	0	.	4593690	4595040	0	1	1350	0
chr16	4593721	4595004	CD4_Plagnol_activated.37406	0	.	4593721	4595004	0	1	1283	0
chr16	4593733	4594133	CD4_Plagnol_resting.36520	0	.	4593733	4594133	0	1	400	0
chr16	4593733	4595458	REMC_BreastStem.30218	0	.	4593733	4595458	0	1	1725	0
chr16	4595106	4596154	B_cells_Cheung.116520	0	.	4595106	4596154	0	1	1048	0
chr16	4595138	4595568	prostate_carcinoma.58157	0	.	4595138	4595568	0	1	430	0
chr16	4595143	4595752	CD4_Plagnol_activated.37407	0	.	4595143	4595752	0	1	609	0
chr16	4595152	4595752	CD4_Plagnol_resting.36522	0	.	4595152	4595752	0	1	600	0
chr16	4596238	4597219	B_cells_Cheung.116521	0	.	4596238	4597219	0	1	981	0
chr16	4596250	4597206	CD4_Plagnol_resting.36524	0	.	4596250	4597206	0	1	956	0
chr16	4596260	4597216	B_Cells_Pritchard.1989571	0	+	4596260	4597216	0	1	956	0
chr16	4596303	4597210	HepG2_Caltech_ENCODE.21316	0	.	4596303	4597210	0	1	907	0
chr16	4596318	4597212	melanoma_Garraway_short_term_cultures.40472	0	.	4596318	4597212	0	1	894	0
chr16	4596336	4597151	MCF7_Burge_Thompson.17854	0	.	4596336	4597151	0	1	815	0
chr16	4596394	4597206	prostate_carcinoma.58158	0	.	4596394	4597206	0	1	812	0
chr16	4596402	4597180	MIP101.40213	0	.	4596402	4597180	0	1	778	0
chr16	4596406	4597218	CD4_Plagnol_activated.37409	0	.	4596406	4597218	0	1	812	0
chr16	4596406	4597390	brain_AmbionMAQC.25622	0	.	4596406	4597390	0	1	984	0
chr16	4596411	4597197	prostate_normal.34110	0	.	4596411	4597197	0	1	786	0
chr16	4757820	4759486	B_Cells_Pritchard.1989749	0	+	4757820	4759486	0	1	1666	0
chr16	4758470	4759096	A549_Myers.48300	0	.	4758470	4759096	0	1	626	0
chr16	4780886	4781683	prostate_carcinoma.59048	0	.	4780886	4781683	0	1	797	0
chr16	4781073	4781712	brain_AmbionMAQC.25660	0	.	4781073	4781712	0	1	639	0
chr16	4781119	4781723	ZR751_Thompson.14176	0	.	4781119	4781723	0	1	604	0
chr16	4785066	4786447	ZR751_Thompson.14191	0	+	4785066	4786447	0	5	385,47,164,101,256	0,416,630,883,1125
chr16	4785143	4786458	B_Cells_Pritchard.1994985	0	+	4785143	4786458	0	1	1315	0
chr16	4785189	4785940	brain_AmbionMAQC.25792	0	-	4785189	4785940	0	2	9,650	0,101
chr16	4785260	4786534	HIT000389794	0	+	4785260	4786534	0	2	530,200	0,1074
chr16	4785334	4786266	B_cells_Cheung.116560	0	+	4785334	4786266	0	2	117,550	0,382
chr16	4785351	4786247	REMC_LuminalBreast.59753	0	+	4785351	4786247	0	4	100,144,101,56	0,365,598,840
chr16	4785354	4786338	T47D_Burge_Thompson.16828	0	+	4785354	4786338	0	4	97,144,101,147	0,362,595,837
chr16	4785379	4786283	NR_029455	0	+	4785379	4786283	0	4	72,144,86,92	0,337,570,812
chr16	4785396	4786404	MCF10A_Thompson.12779	0	+	4785396	4786404	0	3	55,319,213	0,320,795
chr16	4785704	4786320	HIT000435643	0	+	4785704	4786320	0	2	156,371	0,245
chr16	4933224	4933619	A549_Myers.48326	0	.	4933224	4933619	0	1	395	0
chr16	4936774	4937954	H1_polyA+.67754	0	.	4936774	4937954	0	1	1180	0
chr16	4944955	4945376	B_cells_Cheung.116603	0	.	4944955	4945376	0	1	421	0
chr16	5010436	5010856	A549_Myers.48338	0	.	5010436	5010856	0	1	420	0
chr16	5026482	5027096	B_Cells_Pritchard.1990589	0	.	5026482	5027096	0	1	614	0
chr16	5028698	5029481	H1_polyA+.67772	0	.	5028698	5029481	0	1	783	0
chr16	5031195	5031705	H1_polyA+.67773	0	.	5031195	5031705	0	1	510	0
chr16	5032436	5032758	HeLa_polyA+_Chen.21370	0	.	5032436	5032758	0	1	322	0
chr16	5089890	5138309	pHIT000115256	0	-	5089890	5138309	0	4	12,243,279,21	0,10919,11263,48398
chr16	5135974	5136549	H1_polyA+.67798	0	.	5135974	5136549	0	1	575	0
chr16	5148353	5148924	B_Cells_Pritchard.1991031	0	.	5148353	5148924	0	1	571	0
chr16	5218275	5219296	B_Cells_Pritchard.1991241	0	.	5218275	5219296	0	1	1021	0
chr16	5225075	5225840	HepG2_Caltech_ENCODE.21392	0	.	5225075	5225840	0	1	765	0
chr16	5225091	5225832	H1_polyA+.67804	0	.	5225091	5225832	0	1	741	0
chr16	5225285	5225809	H9_polyA+.26402	0	.	5225285	5225809	0	1	524	0
chr16	5229888	5232653	pHIT000115257	0	+	5229888	5232653	0	3	219,29,166	0,1367,2599
chr16	5233097	5233550	H1_polyA+.67809	0	.	5233097	5233550	0	1	453	0
chr16	5243951	5245768	H1_polyA+.67818	0	.	5243951	5245768	0	1	1817	0
chr16	5263869	5264872	H1_polyA+.67825	0	.	5263869	5264872	0	1	1003	0
chr16	5265538	5266211	H1_polyA+.67827	0	.	5265538	5266211	0	1	673	0
chr16	5293763	5298158	H1_polyA+.67843	0	.	5293763	5298158	0	1	4395	0
chr16	5302465	5303858	H1_polyA+.67850	0	.	5302465	5303858	0	1	1393	0
chr16	5309132	5314195	H1_polyA+.67853	0	.	5309132	5314195	0	1	5063	0
chr16	5314448	5319711	H1_polyA+.67854	0	.	5314448	5319711	0	1	5263	0
chr16	5324581	5333481	H1_polyA+.67857	0	.	5324581	5333481	0	1	8900	0
chr16	5333671	5339541	H1_polyA+.67858	0	-	5333671	5339541	0	2	3974,1310	0,4560
chr16	5333671	5338062	H1_polyA+.67859	0	.	5333671	5338062	0	1	4391	0
chr16	5349661	5352197	H1_polyA+.67867	0	.	5349661	5352197	0	1	2536	0
chr16	5355607	5359773	H1_polyA+.67870	0	.	5355607	5359773	0	1	4166	0
chr16	5356096	5356549	HepG2_Caltech_ENCODE.21394	0	.	5356096	5356549	0	1	453	0
chr16	5356109	5413600	pHIT000026467	0	-	5356109	5413600	0	5	37,159,79,127,54	0,29092,38494,55298,57437
chr16	5356235	5356590	K562.26375	0	.	5356235	5356590	0	1	355	0
chr16	5361192	5364147	H1_polyA+.67872	0	.	5361192	5364147	0	1	2955	0
chr16	5366364	5370119	H1_polyA+.67874	0	.	5366364	5370119	0	1	3755	0
chr16	5370220	5373774	H1_polyA+.67875	0	.	5370220	5373774	0	1	3554	0
chr16	5382308	5390199	H1_polyA+.67881	0	.	5382308	5390199	0	1	7891	0
chr16	5394096	5397598	H1_polyA+.67884	0	.	5394096	5397598	0	1	3502	0
chr16	5397750	5401672	H1_polyA+.67885	0	.	5397750	5401672	0	1	3922	0
chr16	5401795	5404821	H1_polyA+.67886	0	.	5401795	5404821	0	1	3026	0
chr16	5409477	5410542	H1_polyA+.67889	0	.	5409477	5410542	0	1	1065	0
chr16	5415496	5417260	H1_polyA+.67893	0	.	5415496	5417260	0	1	1764	0
chr16	5417597	5421379	H1_polyA+.67894	0	.	5417597	5421379	0	1	3782	0
chr16	5422857	5424135	H1_polyA+.67896	0	.	5422857	5424135	0	1	1278	0
chr16	5424497	5426751	H1_polyA+.67897	0	.	5424497	5426751	0	1	2254	0
chr16	5426856	5430550	H1_polyA+.67898	0	.	5426856	5430550	0	1	3694	0
chr16	5438422	5440403	H1_polyA+.67902	0	.	5438422	5440403	0	1	1981	0
chr16	5454738	5456342	H1_polyA+.67908	0	.	5454738	5456342	0	1	1604	0
chr16	5456573	5460255	H1_polyA+.67909	0	.	5456573	5460255	0	1	3682	0
chr16	5463306	5464373	H1_polyA+.67911	0	.	5463306	5464373	0	1	1067	0
chr16	5464656	5466936	H1_polyA+.67912	0	.	5464656	5466936	0	1	2280	0
chr16	5469694	5471053	H1_polyA+.67914	0	.	5469694	5471053	0	1	1359	0
chr16	5475524	5485904	H1_polyA+.67916	0	+	5475524	5485904	0	2	2584,7078	0,3302
chr16	5478348	5485904	H1_polyA+.67917	0	.	5478348	5485904	0	1	7556	0
chr16	5486122	5489698	H1_polyA+.67918	0	.	5486122	5489698	0	1	3576	0
chr16	5487872	5488289	B_Cells_Pritchard.1992077	0	.	5487872	5488289	0	1	417	0
chr16	5491204	5494397	H1_polyA+.67921	0	.	5491204	5494397	0	1	3193	0
chr16	5494538	5498326	H1_polyA+.67922	0	.	5494538	5498326	0	1	3788	0
chr16	5498402	5499455	H1_polyA+.67923	0	.	5498402	5499455	0	1	1053	0
chr16	5501959	5504639	H1_polyA+.67925	0	.	5501959	5504639	0	1	2680	0
chr16	5511385	5513060	H1_polyA+.67929	0	.	5511385	5513060	0	1	1675	0
chr16	5516870	5518694	H1_polyA+.67932	0	.	5516870	5518694	0	1	1824	0
chr16	5535221	5537914	H1_polyA+.67938	0	.	5535221	5537914	0	1	2693	0
chr16	5539277	5541389	H1_polyA+.67939	0	.	5539277	5541389	0	1	2112	0
chr16	5562638	5563028	B_Cells_Pritchard.1992329	0	.	5562638	5563028	0	1	390	0
chr16	5563128	5563458	B_Cells_Pritchard.1992331	0	.	5563128	5563458	0	1	330	0
chr16	5586862	5587496	testes_Burge.30728	0	.	5586862	5587496	0	1	634	0
chr16	5588904	5592667	H1_polyA+.67946	0	.	5588904	5592667	0	1	3763	0
chr16	5598440	5600186	H1_polyA+.67952	0	.	5598440	5600186	0	1	1746	0
chr16	5600896	5601951	H1_polyA+.67953	0	.	5600896	5601951	0	1	1055	0
chr16	5602053	5602609	H1_polyA+.67954	0	.	5602053	5602609	0	1	556	0
chr16	5605946	5606574	A549_Myers.48353	0	.	5605946	5606574	0	1	628	0
chr16	5630253	5631332	H1_polyA+.67965	0	.	5630253	5631332	0	1	1079	0
chr16	5643006	5643611	MCF7_Burge_Thompson.17885	0	.	5643006	5643611	0	1	605	0
chr16	5643033	5643656	ZR751_Thompson.14212	0	.	5643033	5643656	0	1	623	0
chr16	5643059	5643701	BT474_Burge_Thompson.19431	0	.	5643059	5643701	0	1	642	0
chr16	5695449	5696014	H1_polyA+.67975	0	.	5695449	5696014	0	1	565	0
chr16	5720354	5721328	H1_polyA+.67978	0	.	5720354	5721328	0	1	974	0
chr16	5726642	5726960	B_Cells_Pritchard.1992963	0	+	5726642	5726960	0	1	318	0
chr16	5747233	5748528	HIT000092508	0	-	5747233	5748528	0	1	1295	0
chr16	5859589	5871393	H1_polyA+.67985	0	.	5859589	5871393	0	1	11804	0
chr16	5871587	5874460	H1_polyA+.67986	0	.	5871587	5874460	0	1	2873	0
chr16	5874578	5883170	H1_polyA+.67987	0	-	5874578	5883170	0	2	7128,9	0,8583
chr16	5874578	5884232	H1_polyA+.67988	0	.	5874578	5884232	0	1	9654	0
chr16	5887343	5894677	H1_polyA+.67990	0	.	5887343	5894677	0	1	7334	0
chr16	5900018	5904609	H1_polyA+.67994	0	.	5900018	5904609	0	1	4591	0
chr16	5910253	5911656	H1_polyA+.67997	0	.	5910253	5911656	0	1	1403	0
chr16	5912997	5956024	pHIT000115259	0	-	5912997	5956024	0	3	149,48,181	0,38002,42846
chr16	5920900	5923858	H1_polyA+.68000	0	.	5920900	5923858	0	1	2958	0
chr16	5924001	5925007	H1_polyA+.68001	0	.	5924001	5925007	0	1	1006	0
chr16	5934990	5939298	H1_polyA+.68007	0	.	5934990	5939298	0	1	4308	0
chr16	5941374	5942922	H1_polyA+.68009	0	.	5941374	5942922	0	1	1548	0
chr16	5950193	5959380	H1_polyA+.68015	0	.	5950193	5959380	0	1	9187	0
chr16	5960027	6008859	pHIT000115260	0	-	5960027	6008859	0	4	113,135,23,50	0,7459,22109,48782
chr16	5966197	5968208	H1_polyA+.68018	0	.	5966197	5968208	0	1	2011	0
chr16	5968347	5972286	H1_polyA+.68019	0	.	5968347	5972286	0	1	3939	0
chr16	5972546	5974962	H1_polyA+.68020	0	.	5972546	5974962	0	1	2416	0
chr16	5975276	5979031	H1_polyA+.68021	0	.	5975276	5979031	0	1	3755	0
chr16	5979352	5980780	H1_polyA+.68022	0	.	5979352	5980780	0	1	1428	0
chr16	5982878	5984146	H1_polyA+.68024	0	.	5982878	5984146	0	1	1268	0
chr16	5996813	6003731	H1_polyA+.68032	0	.	5996813	6003731	0	1	6918	0
chr16	7810833	7812565	K562.26544	0	.	7810833	7812565	0	1	1732	0
chr16	7837758	7838198	K562.26550	0	.	7837758	7838198	0	1	440	0
chr16	7901181	7901726	K562.26574	0	.	7901181	7901726	0	1	545	0
chr16	7916129	7918617	K562.26582	0	.	7916129	7918617	0	1	2488	0
chr16	7937248	7940798	K562.26597	0	.	7937248	7940798	0	1	3550	0
chr16	7941525	7942014	K562.26598	0	.	7941525	7942014	0	1	489	0
chr16	7946373	7948044	K562.26602	0	.	7946373	7948044	0	1	1671	0
chr16	7969148	7972159	K562.26609	0	.	7969148	7972159	0	1	3011	0
chr16	8078761	8079435	melanoma_Garraway_short_term_cultures.40568	0	.	8078761	8079435	0	1	674	0
chr16	8172740	8179970	pHIT000115264	0	+	8172740	8179970	0	2	218,160	0,7070
chr16	8288494	8289783	HIT000024668	0	+	8288494	8289783	0	1	1289	0
chr16	8553685	8554500	H1_polyA+.68373	0	.	8553685	8554500	0	1	815	0
chr16	8554773	8556008	H1_polyA+.68374	0	.	8554773	8556008	0	1	1235	0
chr16	8567735	8568368	H9_polyA+.26415	0	.	8567735	8568368	0	1	633	0
chr16	8571722	8574656	H1_polyA+.68382	0	.	8571722	8574656	0	1	2934	0
chr16	8574814	8576921	H1_polyA+.68383	0	.	8574814	8576921	0	1	2107	0
chr16	8594447	8595334	H1_polyA+.68384	0	.	8594447	8595334	0	1	887	0
chr16	8651017	8652457	REMC_LuminalBreast.59778	0	.	8651017	8652457	0	1	1440	0
chr16	8656556	8660439	B_cells_Cheung.116677	0	.	8656556	8660439	0	1	3883	0
chr16	8658750	8659416	REMC_MyoepithelialBreast.55752	0	.	8658750	8659416	0	1	666	0
chr16	8794885	8795291	prostate_normal.34208	0	.	8794885	8795291	0	1	406	0
chr16	8851769	8852288	brain_AmbionMAQC.25750	0	.	8851769	8852288	0	1	519	0
chr16	8851782	8852215	ZR751_Thompson.14228	0	.	8851782	8852215	0	1	433	0
chr16	8851800	8852285	MB435_Burge.24481	0	.	8851800	8852285	0	1	485	0
chr16	8851879	8852208	testes_Burge.30854	0	.	8851879	8852208	0	1	329	0
chr16	8851902	8852245	HME_Burge.23393	0	.	8851902	8852245	0	1	343	0
chr16	8852026	8852536	H1_rRNA-depleted_UCSD_REMC.52482	0	.	8852026	8852536	0	1	510	0
chr16	8871890	8878155	REMC_LuminalBreast.59840	0	.	8871890	8878155	0	1	6265	0
chr16	8871907	8875001	REMC_MyoepithelialBreast.55780	0	.	8871907	8875001	0	1	3094	0
chr16	8874051	8875299	REMC_BreastStem.30309	0	.	8874051	8875299	0	1	1248	0
chr16	8876725	8877543	B_cells_Cheung.116744	0	.	8876725	8877543	0	1	818	0
chr16	8876785	8877520	B_Cells_Pritchard.2001057	0	.	8876785	8877520	0	1	735	0
chr16	8878260	8879071	B_cells_Cheung.116746	0	.	8878260	8879071	0	1	811	0
chr16	8878279	8881272	REMC_LuminalBreast.59841	0	.	8878279	8881272	0	1	2993	0
chr16	8878308	8878731	REMC_BreastStem.30311	0	.	8878308	8878731	0	1	423	0
chr16	8878354	8878747	A549_Myers.48397	0	.	8878354	8878747	0	1	393	0
chr16	8878361	8878989	B_Cells_Pritchard.2001063	0	.	8878361	8878989	0	1	628	0
chr16	8878768	8880893	REMC_MyoepithelialBreast.55783	0	.	8878768	8880893	0	1	2125	0
chr16	8878864	8880170	REMC_BreastStem.30312	0	.	8878864	8880170	0	1	1306	0
chr16	8880338	8881181	REMC_BreastStem.30313	0	.	8880338	8881181	0	1	843	0
chr16	8881469	8881990	B_cells_Cheung.116751	0	.	8881469	8881990	0	1	521	0
chr16	8881486	8881987	B_Cells_Pritchard.2001075	0	.	8881486	8881987	0	1	501	0
chr16	8881631	8882846	REMC_MyoepithelialBreast.55784	0	.	8881631	8882846	0	1	1215	0
chr16	8883707	8884128	testes_Burge.30764	0	.	8883707	8884128	0	1	421	0
chr16	8887684	8888563	H1_polyA+.68491	0	.	8887684	8888563	0	1	879	0
chr16	8888349	8890035	B_cells_Cheung.116758	0	.	8888349	8890035	0	1	1686	0
chr16	8888386	8889975	MIP101.40318	0	.	8888386	8889975	0	1	1589	0
chr16	8888675	8889979	HepG2_Caltech_ENCODE.21408	0	.	8888675	8889979	0	1	1304	0
chr16	8889304	8890217	REMC_BreastStem.30319	0	.	8889304	8890217	0	1	913	0
chr16	8889361	8889808	A549_Myers.48400	0	.	8889361	8889808	0	1	447	0
chr16	8969963	8970386	B_cells_Cheung.116768	0	.	8969963	8970386	0	1	423	0
chr16	8979689	8980133	B_cells_Cheung.116774	0	.	8979689	8980133	0	1	444	0
chr16	8990633	8991347	B_Cells_Pritchard.2001289	0	-	8990633	8991347	0	1	714	0
chr16	9010007	9010488	A549_Myers.48414	0	.	9010007	9010488	0	1	481	0
chr16	9034170	9034644	H1_polyA+.68516	0	.	9034170	9034644	0	1	474	0
chr16	9037171	9038880	H1_polyA+.68518	0	.	9037171	9038880	0	1	1709	0
chr16	9039860	9045029	H1_polyA+.68519	0	.	9039860	9045029	0	1	5169	0
chr16	9047305	9054567	H1_polyA+.68522	0	.	9047305	9054567	0	1	7262	0
chr16	9051621	9052012	B_Cells_Pritchard.2001421	0	.	9051621	9052012	0	1	391	0
chr16	9054409	9054804	A549_Myers.48417	0	.	9054409	9054804	0	1	395	0
chr16	9063506	9064570	K562.26430	0	.	9063506	9064570	0	1	1064	0
chr16	9063610	9064225	melanoma_Garraway_short_term_cultures.40629	0	.	9063610	9064225	0	1	615	0
chr16	9123556	9127782	H1_polyA+.68542	0	.	9123556	9127782	0	1	4226	0
chr16	9124335	9127764	B_cells_Cheung.116782	0	.	9124335	9127764	0	1	3429	0
chr16	9124771	9125543	A549_Myers.48426	0	.	9124771	9125543	0	1	772	0
chr16	9124913	9125783	CD4_Plagnol_activated.37618	0	.	9124913	9125783	0	1	870	0
chr16	9129803	9134431	REMC_MyoepithelialBreast.56037	0	.	9129803	9134431	0	1	4628	0
chr16	9130734	9131056	B_cells_Cheung.116785	0	.	9130734	9131056	0	1	322	0
chr16	9130830	9135121	REMC_BreastStem.30344	0	.	9130830	9135121	0	1	4291	0
chr16	9130836	9131962	H1_polyA+.68544	0	.	9130836	9131962	0	1	1126	0
chr16	9132579	9133917	liver_polyA+.80887	0	-	9132579	9133917	0	2	204,211	0,1127
chr16	9133310	9134428	CD4_Plagnol_resting.36793	0	.	9133310	9134428	0	1	1118	0
chr16	9134498	9135124	REMC_MyoepithelialBreast.56038	0	.	9134498	9135124	0	1	626	0
chr16	9134765	9135118	H1_polyA+.68546	0	.	9134765	9135118	0	1	353	0
chr16	9135225	9141738	REMC_BreastStem.30345	0	.	9135225	9141738	0	1	6513	0
chr16	9135243	9141393	REMC_MyoepithelialBreast.56039	0	.	9135243	9141393	0	1	6150	0
chr16	9135285	9137869	H1_polyA+.68547	0	.	9135285	9137869	0	1	2584	0
chr16	9135869	9136457	CD4_Plagnol_activated.37621	0	.	9135869	9136457	0	1	588	0
chr16	9136136	9136499	A549_Myers.48428	0	.	9136136	9136499	0	1	363	0
chr16	9138704	9140878	H1_polyA+.68549	0	.	9138704	9140878	0	1	2174	0
chr16	9139440	9140870	MIP101.40330	0	.	9139440	9140870	0	1	1430	0
chr16	9139452	9140882	prostate_carcinoma.58394	0	.	9139452	9140882	0	1	1430	0
chr16	9139463	9140879	melanoma_Garraway_short_term_cultures.40638	0	.	9139463	9140879	0	1	1416	0
chr16	9139794	9140523	B_cells_Cheung.116797	0	.	9139794	9140523	0	1	729	0
chr16	9139812	9140800	prostate_normal.34235	0	.	9139812	9140800	0	1	988	0
chr16	9140305	9140808	A549_Myers.48429	0	.	9140305	9140808	0	1	503	0
chr16	9141021	9141748	H1_polyA+.68550	0	.	9141021	9141748	0	1	727	0
chr16	9145428	9145926	B_cells_Cheung.116802	0	.	9145428	9145926	0	1	498	0
chr16	9145558	9145965	BT474_Burge_Thompson.19463	0	.	9145558	9145965	0	1	407	0
chr16	9147421	9148714	REMC_BreastStem.30348	0	.	9147421	9148714	0	1	1293	0
chr16	9147440	9148625	H1_polyA+.68554	0	.	9147440	9148625	0	1	1185	0
chr16	9148858	9152182	REMC_LuminalBreast.60135	0	.	9148858	9152182	0	1	3324	0
chr16	9148859	9152177	REMC_BreastStem.30349	0	.	9148859	9152177	0	1	3318	0
chr16	9148864	9151249	REMC_MyoepithelialBreast.56040	0	.	9148864	9151249	0	1	2385	0
chr16	9152387	9156973	REMC_BreastStem.30350	0	.	9152387	9156973	0	1	4586	0
chr16	9152844	9157039	REMC_LuminalBreast.60136	0	.	9152844	9157039	0	1	4195	0
chr16	9152849	9156530	REMC_MyoepithelialBreast.56043	0	.	9152849	9156530	0	1	3681	0
chr16	9153966	9155304	BT474_Burge_Thompson.19464	0	.	9153966	9155304	0	1	1338	0
chr16	9154130	9155595	H1_polyA+.68557	0	.	9154130	9155595	0	1	1465	0
chr16	9154586	9155306	B_Cells_Pritchard.2007937	0	+	9154586	9155306	0	1	720	0
chr16	9154847	9155364	MCF7_Burge_Thompson.17947	0	.	9154847	9155364	0	1	517	0
chr16	9157188	9157665	REMC_BreastStem.30351	0	.	9157188	9157665	0	1	477	0
chr16	9158558	9159728	REMC_BreastStem.30352	0	.	9158558	9159728	0	1	1170	0
chr16	9160188	9161094	REMC_BreastStem.30353	0	.	9160188	9161094	0	1	906	0
chr16	9161221	9162052	REMC_BreastStem.30354	0	.	9161221	9162052	0	1	831	0
chr16	9161638	9162068	A549_Myers.48431	0	.	9161638	9162068	0	1	430	0
chr16	9165623	9167976	REMC_LuminalBreast.59869	0	.	9165623	9167976	0	1	2353	0
chr16	9165633	9167997	REMC_MyoepithelialBreast.56046	0	.	9165633	9167997	0	1	2364	0
chr16	9166545	9168138	REMC_BreastStem.30356	0	.	9166545	9168138	0	1	1593	0
chr16	9169655	9174208	REMC_LuminalBreast.59870	0	.	9169655	9174208	0	1	4553	0
chr16	9169995	9173203	REMC_MyoepithelialBreast.55793	0	.	9169995	9173203	0	1	3208	0
chr16	9171655	9172337	H1_polyA+.68561	0	.	9171655	9172337	0	1	682	0
chr16	9177870	9179676	REMC_LuminalBreast.59873	0	.	9177870	9179676	0	1	1806	0
chr16	9178174	9178806	REMC_BreastStem.30358	0	.	9178174	9178806	0	1	632	0
chr16	9181788	9185761	REMC_LuminalBreast.59875	0	.	9181788	9185761	0	1	3973	0
chr16	9189270	9190795	REMC_LuminalBreast.59877	0	.	9189270	9190795	0	1	1525	0
chr16	9189719	9190722	REMC_MyoepithelialBreast.55804	0	.	9189719	9190722	0	1	1003	0
chr16	9200291	9201813	REMC_LuminalBreast.59881	0	.	9200291	9201813	0	1	1522	0
chr16	9204673	9205611	REMC_MyoepithelialBreast.55809	0	.	9204673	9205611	0	1	938	0
chr16	9226258	9227409	REMC_LuminalBreast.59884	0	.	9226258	9227409	0	1	1151	0
chr16	9226711	9227676	REMC_MyoepithelialBreast.55818	0	.	9226711	9227676	0	1	965	0
chr16	9236836	9240475	REMC_MyoepithelialBreast.55824	0	.	9236836	9240475	0	1	3639	0
chr16	9239892	9240679	REMC_LuminalBreast.59887	0	.	9239892	9240679	0	1	787	0
chr16	9250298	9251701	REMC_MyoepithelialBreast.55828	0	.	9250298	9251701	0	1	1403	0
chr16	9255275	9255982	REMC_MyoepithelialBreast.55829	0	.	9255275	9255982	0	1	707	0
chr16	9259196	9259911	REMC_MyoepithelialBreast.55830	0	.	9259196	9259911	0	1	715	0
chr16	9284841	9286265	REMC_MyoepithelialBreast.55835	0	.	9284841	9286265	0	1	1424	0
chr16	9297215	9297950	REMC_MyoepithelialBreast.55839	0	.	9297215	9297950	0	1	735	0
chr16	9356945	9409525	HIT000306543	0	+	9356945	9409525	0	3	193,54,5125	0,46142,47455
chr16	9404418	9404889	liver_polyA+.80891	0	.	9404418	9404889	0	1	471	0
chr16	9406016	9406745	REMC_MyoepithelialBreast.55844	0	.	9406016	9406745	0	1	729	0
chr16	9406050	9406812	BT20_Thompson.12585	0	.	9406050	9406812	0	1	762	0
chr16	9406116	9407116	REMC_BreastStem.30359	0	.	9406116	9407116	0	1	1000	0
chr16	9406149	9406533	liver_polyA+.80892	0	.	9406149	9406533	0	1	384	0
chr16	9406239	9406552	brain_AmbionMAQC.25795	0	.	9406239	9406552	0	1	313	0
chr16	9406809	9407521	REMC_MyoepithelialBreast.55845	0	.	9406809	9407521	0	1	712	0
chr16	9559278	9559774	liver_polyA+.80897	0	.	9559278	9559774	0	1	496	0
chr16	9563384	9564853	liver_polyA+.80902	0	+	9563384	9564853	0	2	561,134	0,1335
chr16	9575807	9578254	liver_polyA+.80966	0	.	9575807	9578254	0	1	2447	0
chr16	9575990	9576336	kidney_Gilad.51907	0	.	9575990	9576336	0	1	346	0
chr16	9577551	9578188	kidney_Gilad.51911	0	.	9577551	9578188	0	1	637	0
chr16	9617141	9622799	liver_polyA+.80970	0	-	9617141	9622799	0	2	4843,110	0,5548
chr16	9620501	9622943	kidney_Gilad.51937	0	-	9620501	9622943	0	2	1483,254	0,2188
chr16	9628414	9629187	kidney_Gilad.51944	0	.	9628414	9629187	0	1	773	0
chr16	9653589	9656229	liver_polyA+.80923	0	-	9653589	9656229	0	2	489,1717	0,923
chr16	9654109	9656229	liver_polyA+.80924	0	.	9654109	9656229	0	1	2120	0
chr16	9656817	9661191	liver_polyA+.80916	0	.	9656817	9661191	0	1	4374	0
chr16	9660735	9661183	kidney_Gilad.51959	0	.	9660735	9661183	0	1	448	0
chr16	9661617	9663491	liver_polyA+.80925	0	.	9661617	9663491	0	1	1874	0
chr16	9664780	9666438	liver_polyA+.80927	0	+	9664780	9666438	0	2	1040,415	0,1243
chr16	9664997	9666097	kidney_Gilad.51962	0	+	9664997	9666097	0	2	823,74	0,1026
chr16	9666882	9671957	H1_polyA+.69816	0	+	9666882	9671957	0	2	2476,2220	0,2855
chr16	9668109	9672291	H9_polyA+.26454	0	.	9668109	9672291	0	1	4182	0
chr16	9668109	9675468	H9_polyA+.26453	0	-	9668109	9675468	0	2	3675,103	0,7256
chr16	9668295	9677865	H1_polyA+.69815	0	-	9668295	9677865	0	4	3646,101,511,1450	0,4047,6745,8120
chr16	9668305	9669427	liver_polyA+.80917	0	.	9668305	9669427	0	1	1122	0
chr16	9668360	9668883	H1_rRNA-depleted_UCSD_REMC.52524	0	.	9668360	9668883	0	1	523	0
chr16	9668668	9669401	kidney_Gilad.51967	0	.	9668668	9669401	0	1	733	0
chr16	9669064	9670461	H1_rRNA-depleted_UCSD_REMC.52525	0	.	9669064	9670461	0	1	1397	0
chr16	9677118	9677445	H1_rRNA-depleted_UCSD_REMC.52591	0	.	9677118	9677445	0	1	327	0
chr16	9680419	9681355	liver_polyA+.80934	0	.	9680419	9681355	0	1	936	0
chr16	9717595	9718266	H1_rRNA-depleted_UCSD_REMC.52588	0	.	9717595	9718266	0	1	671	0
chr16	9732813	9739706	H1_polyA+.69833	0	.	9732813	9739706	0	1	6893	0
chr16	9748934	9752234	H1_polyA+.69836	0	.	9748934	9752234	0	1	3300	0
chr16	10487463	10489534	REMC_LuminalBreast.59929	0	.	10487463	10489534	0	1	2071	0
chr16	10487904	10489536	REMC_MyoepithelialBreast.55879	0	.	10487904	10489536	0	1	1632	0
chr16	10489678	10492181	REMC_MyoepithelialBreast.55880	0	.	10489678	10492181	0	1	2503	0
chr16	10489834	10490615	REMC_LuminalBreast.59930	0	.	10489834	10490615	0	1	781	0
chr16	10490816	10493265	REMC_LuminalBreast.59931	0	.	10490816	10493265	0	1	2449	0
chr16	10492349	10494382	REMC_MyoepithelialBreast.55881	0	.	10492349	10494382	0	1	2033	0
chr16	10493110	10493736	MIP101.40403	0	.	10493110	10493736	0	1	626	0
chr16	10493364	10495347	REMC_LuminalBreast.59932	0	.	10493364	10495347	0	1	1983	0
chr16	10494739	10495365	REMC_MyoepithelialBreast.55882	0	.	10494739	10495365	0	1	626	0
chr16	10497921	10499673	REMC_LuminalBreast.59934	0	.	10497921	10499673	0	1	1752	0
chr16	10498172	10499838	MIP101.40406	0	.	10498172	10499838	0	1	1666	0
chr16	10498957	10499598	prostate_carcinoma.58436	0	.	10498957	10499598	0	1	641	0
chr16	10583468	10583907	B_Cells_Pritchard.2005453	0	.	10583468	10583907	0	1	439	0
chr16	10583563	10585700	prostate_carcinoma.58456	0	.	10583563	10585700	0	1	2137	0
chr16	10584235	10587081	H1_polyA+.68632	0	+	10584235	10587081	0	2	906,745	0,2101
chr16	10585978	10587110	prostate_carcinoma.58457	0	.	10585978	10587110	0	1	1132	0
chr16	10586008	10586970	MIP101.40444	0	.	10586008	10586970	0	1	962	0
chr16	10586216	10587100	HepG2_Caltech_ENCODE.21451	0	.	10586216	10587100	0	1	884	0
chr16	10586643	10587095	B_cells_Cheung.117010	0	.	10586643	10587095	0	1	452	0
chr16	10619584	10620580	T47D_Burge_Thompson.16894	0	.	10619584	10620580	0	1	996	0
chr16	10620890	10621263	ZR751_Thompson.14248	0	.	10620890	10621263	0	1	373	0
chr16	10623345	10623756	B_cells_Cheung.117022	0	.	10623345	10623756	0	1	411	0
chr16	10623829	10624527	B_cells_Cheung.117023	0	.	10623829	10624527	0	1	698	0
chr16	10704958	10706378	H1_polyA+.68638	0	.	10704958	10706378	0	1	1420	0
chr16	10729257	10729758	B_Cells_Pritchard.2006029	0	.	10729257	10729758	0	1	501	0
chr16	10729331	10731375	H1_polyA+.68642	0	.	10729331	10731375	0	1	2044	0
chr16	10729428	10730719	REMC_LuminalBreast.59978	0	.	10729428	10730719	0	1	1291	0
chr16	10729867	10731237	B_Cells_Pritchard.2006033	0	-	10729867	10731237	0	1	1370	0
chr16	10729867	10731491	B_Cells_Pritchard.2006031	0	+	10729867	10731491	0	1	1624	0
chr16	10730170	10731522	B_cells_Cheung.117043	0	.	10730170	10731522	0	1	1352	0
chr16	10740596	10741819	REMC_LuminalBreast.59979	0	.	10740596	10741819	0	1	1223	0
chr16	10740716	10741598	B_cells_Cheung.117053	0	.	10740716	10741598	0	1	882	0
chr16	10740716	10741509	B_Cells_Pritchard.2006089	0	+	10740716	10741509	0	1	793	0
chr16	10741430	10742171	H1_polyA+.68645	0	.	10741430	10742171	0	1	741	0
chr16	10823486	10824854	B_cells_Cheung.117093	0	.	10823486	10824854	0	1	1368	0
chr16	10828924	10830493	REMC_MyoepithelialBreast.55933	0	.	10828924	10830493	0	1	1569	0
chr16	10829114	10829571	B_Cells_Pritchard.2006333	0	.	10829114	10829571	0	1	457	0
chr16	10835227	10836228	B_cells_Cheung.117097	0	.	10835227	10836228	0	1	1001	0
chr16	10835258	10836257	B_Cells_Pritchard.2006351	0	.	10835258	10836257	0	1	999	0
chr16	10840081	10844215	B_cells_Cheung.117101	0	.	10840081	10844215	0	1	4134	0
chr16	10841344	10847314	B_Cells_Pritchard.2006375	0	-	10841344	10847314	0	4	1853,118,125,723	0,2262,3526,5247
chr16	10841344	10849897	B_Cells_Pritchard.2006373	0	+	10841344	10849897	0	5	2193,74,83,21,408	0,2263,3528,4766,8145
chr16	10841482	10843366	REMC_BreastStem.30421	0	.	10841482	10843366	0	1	1884	0
chr16	10841869	10843019	REMC_MyoepithelialBreast.55935	0	.	10841869	10843019	0	1	1150	0
chr16	10844307	10849915	B_cells_Cheung.117102	0	.	10844307	10849915	0	1	5608	0
chr16	10848938	10849362	B_Cells_Pritchard.2006397	0	-	10848938	10849362	0	1	424	0
chr16	10850913	10863070	B_Cells_Pritchard.2006405	0	+	10850913	10863070	0	2	351,619	0,11538
chr16	10851098	10852545	B_cells_Cheung.117105	0	.	10851098	10852545	0	1	1447	0
chr16	10854166	10854784	B_cells_Cheung.117108	0	.	10854166	10854784	0	1	618	0
chr16	10859524	10862024	B_cells_Cheung.117116	0	.	10859524	10862024	0	1	2500	0
chr16	10860587	10861180	B_Cells_Pritchard.2006459	0	+	10860587	10861180	0	2	199,312	0,281
chr16	10862257	10863039	B_cells_Cheung.117118	0	.	10862257	10863039	0	1	782	0
chr16	11186252	11187799	B_cells_Cheung.117168	0	.	11186252	11187799	0	1	1547	0
chr16	11186304	11187694	H1_polyA+.68743	0	.	11186304	11187694	0	1	1390	0
chr16	11186478	11187663	REMC_MyoepithelialBreast.56010	0	.	11186478	11187663	0	1	1185	0
chr16	11186663	11187630	B_Cells_Pritchard.2006837	0	-	11186663	11187630	0	1	967	0
chr16	11188473	11189800	H1_polyA+.68744	0	.	11188473	11189800	0	1	1327	0
chr16	11188480	11191078	B_cells_Cheung.117170	0	.	11188480	11191078	0	1	2598	0
chr16	11188611	11190053	MIP101.40511	0	.	11188611	11190053	0	1	1442	0
chr16	11189325	11191046	REMC_LuminalBreast.60302	0	.	11189325	11191046	0	1	1721	0
chr16	11190337	11190799	brain_AmbionMAQC.25923	0	.	11190337	11190799	0	1	462	0
chr16	11191148	11193428	REMC_LuminalBreast.60303	0	.	11191148	11193428	0	1	2280	0
chr16	11193348	11193727	B_cells_Cheung.117171	0	.	11193348	11193727	0	1	379	0
chr16	11195414	11196233	MIP101.40513	0	.	11195414	11196233	0	1	819	0
chr16	11195424	11196077	prostate_normal.34300	0	.	11195424	11196077	0	1	653	0
chr16	11195625	11196515	B_Cells_Pritchard.2006875	0	+	11195625	11196515	0	1	890	0
chr16	11195709	11197766	B_cells_Cheung.117173	0	+	11195709	11197766	0	2	365,206	0,1851
chr16	11198002	11208323	REMC_BreastStem.30527	0	+	11198002	11208323	0	4	29,101,85,1519	0,7886,8623,8802
chr16	11198269	11200972	H1_polyA+.68705	0	.	11198269	11200972	0	1	2703	0
chr16	11198352	11200977	prostate_carcinoma.58546	0	.	11198352	11200977	0	1	2625	0
chr16	11198364	11200951	MIP101.40514	0	.	11198364	11200951	0	1	2587	0
chr16	11199026	11199679	BT474_Burge_Thompson.19510	0	.	11199026	11199679	0	1	653	0
chr16	11199904	11200969	prostate_normal.34299	0	.	11199904	11200969	0	1	1065	0
chr16	11199918	11201137	B_cells_Cheung.117175	0	.	11199918	11201137	0	1	1219	0
chr16	11199950	11201048	REMC_MyoepithelialBreast.56014	0	.	11199950	11201048	0	1	1098	0
chr16	11199955	11201016	REMC_LuminalBreast.60306	0	.	11199955	11201016	0	1	1061	0
chr16	11204203	11215957	REMC_LuminalBreast.60020	0	+	11204203	11215957	0	5	2507,113,2046,118,4180	0,2601,3124,6926,7574
chr16	11204203	11211586	REMC_LuminalBreast.60019	0	.	11204203	11211586	0	1	7383	0
chr16	11205721	11208363	B_Cells_Pritchard.2006899	0	-	11205721	11208363	0	1	2642	0
chr16	11205738	11206924	prostate_carcinoma.58551	0	.	11205738	11206924	0	1	1186	0
chr16	11205796	11206415	B_cells_Cheung.117178	0	.	11205796	11206415	0	1	619	0
chr16	11205887	11206700	brain_AmbionMAQC.25854	0	.	11205887	11206700	0	1	813	0
chr16	11205889	11206664	prostate_normal.34310	0	.	11205889	11206664	0	1	775	0
chr16	11205907	11206417	A549_Myers.48518	0	.	11205907	11206417	0	1	510	0
chr16	11206465	11208217	B_cells_Cheung.117179	0	+	11206465	11208217	0	2	452,890	0,862
chr16	11206968	11208217	B_cells_Cheung.117180	0	.	11206968	11208217	0	1	1249	0
chr16	11207250	11207558	prostate_normal.34311	0	.	11207250	11207558	0	1	308	0
chr16	11208123	11213161	prostate_carcinoma.58552	0	-	11208123	11213161	0	3	287,684,1514	0,1244,3524
chr16	11208272	11208972	A549_Myers.48519	0	+	11208272	11208972	0	2	173,176	0,524
chr16	11208501	11211116	B_Cells_Pritchard.2006901	0	-	11208501	11211116	0	1	2615	0
chr16	11208530	11210633	B_cells_Cheung.117181	0	.	11208530	11210633	0	1	2103	0
chr16	11208551	11211528	REMC_BreastStem.30528	0	.	11208551	11211528	0	1	2977	0
chr16	11208643	11210248	CD4_Plagnol_activated.37718	0	.	11208643	11210248	0	1	1605	0
chr16	11208673	11210223	prostate_normal.34307	0	.	11208673	11210223	0	1	1550	0
chr16	11208673	11213146	prostate_normal.34308	0	-	11208673	11213146	0	2	1378,1499	0,2974
chr16	11208937	11210576	CD4_Plagnol_resting.36760	0	.	11208937	11210576	0	1	1639	0
chr16	11208967	11211412	B_Cells_Pritchard.2006903	0	+	11208967	11211412	0	3	129,82,640	0,776,1805
chr16	11209153	11211167	liver_polyA+.81193	0	-	11209153	11211167	0	2	744,360	0,1654
chr16	11209157	11210381	HIT000047760	0	+	11209157	11210381	0	1	1224	0
chr16	11209367	11210140	prostate_carcinoma.58553	0	.	11209367	11210140	0	1	773	0
chr16	11210687	11211390	B_cells_Cheung.117182	0	.	11210687	11211390	0	1	703	0
chr16	11210692	11211300	CD4_Plagnol_resting.36761	0	.	11210692	11211300	0	1	608	0
chr16	11210827	11211409	prostate_carcinoma.58556	0	.	11210827	11211409	0	1	582	0
chr16	11210843	11211389	prostate_normal.34312	0	.	11210843	11211389	0	1	546	0
chr16	11211648	11215929	B_cells_Cheung.117183	0	+	11211648	11215929	0	2	1513,1455	0,2826
chr16	11211650	11213602	B_Cells_Pritchard.2006905	0	+	11211650	11213602	0	2	1173,593	0,1359
chr16	11211665	11215317	prostate_carcinoma.58554	0	+	11211665	11215317	0	3	1158,152,843	0,1344,2809
chr16	11211671	11213217	REMC_BreastStem.30530	0	.	11211671	11213217	0	1	1546	0
chr16	11211684	11215276	prostate_normal.34305	0	+	11211684	11215276	0	3	1139,152,802	0,1325,2790
chr16	11213252	11214250	prostate_carcinoma.58557	0	.	11213252	11214250	0	1	998	0
chr16	11213650	11215388	REMC_BreastStem.30531	0	.	11213650	11215388	0	1	1738	0
chr16	11214338	11233870	B_Cells_Pritchard.2006913	0	+	11214338	11233870	0	3	295,964,73	0,11120,19459
chr16	11214694	11215247	A549_Myers.48522	0	.	11214694	11215247	0	1	553	0
chr16	11216887	11220913	REMC_MyoepithelialBreast.56016	0	.	11216887	11220913	0	1	4026	0
chr16	11218477	11223954	REMC_LuminalBreast.60022	0	.	11218477	11223954	0	1	5477	0
chr16	11218996	11224007	REMC_BreastStem.30532	0	.	11218996	11224007	0	1	5011	0
chr16	11221370	11221903	prostate_normal.34316	0	.	11221370	11221903	0	1	533	0
chr16	11221371	11222142	CD4_Plagnol_activated.37719	0	.	11221371	11222142	0	1	771	0
chr16	11221374	11221938	prostate_carcinoma.58563	0	.	11221374	11221938	0	1	564	0
chr16	11221376	11222021	B_cells_Cheung.117189	0	.	11221376	11222021	0	1	645	0
chr16	11224120	11224820	REMC_BreastStem.30535	0	.	11224120	11224820	0	1	700	0
chr16	11225197	11228128	REMC_MyoepithelialBreast.56018	0	.	11225197	11228128	0	1	2931	0
chr16	11225259	11228646	REMC_LuminalBreast.60024	0	.	11225259	11228646	0	1	3387	0
chr16	11225287	11226319	brain_AmbionMAQC.25858	0	.	11225287	11226319	0	1	1032	0
chr16	11225339	11228800	REMC_BreastStem.30536	0	.	11225339	11228800	0	1	3461	0
chr16	11225381	11226552	prostate_carcinoma.58567	0	.	11225381	11226552	0	1	1171	0
chr16	11225387	11226416	CD4_Plagnol_activated.37720	0	.	11225387	11226416	0	1	1029	0
chr16	11225447	11226538	B_cells_Cheung.117193	0	.	11225447	11226538	0	1	1091	0
chr16	11225451	11226390	prostate_normal.34314	0	.	11225451	11226390	0	1	939	0
chr16	11225604	11226269	MCF7_Burge_Thompson.18006	0	.	11225604	11226269	0	1	665	0
chr16	11225658	11226176	B_Cells_Pritchard.2006915	0	-	11225658	11226176	0	1	518	0
chr16	11225779	11226307	CD4_Plagnol_resting.36764	0	.	11225779	11226307	0	1	528	0
chr16	11233954	11237387	REMC_MyoepithelialBreast.56023	0	.	11233954	11237387	0	1	3433	0
chr16	11233969	11245632	REMC_LuminalBreast.60028	0	.	11233969	11245632	0	1	11663	0
chr16	11234029	11235013	B_Cells_Pritchard.2006935	0	+	11234029	11235013	0	1	984	0
chr16	11234111	11234997	B_cells_Cheung.117195	0	.	11234111	11234997	0	1	886	0
chr16	11239724	11245650	REMC_MyoepithelialBreast.56025	0	.	11239724	11245650	0	1	5926	0
chr16	11240937	11245600	K562.26484	0	.	11240937	11245600	0	1	4663	0
chr16	11243575	11245488	K562.26485	0	+	11243575	11245488	0	2	40,961	0,952
chr16	11243820	11244837	H1_polyA+.68708	0	.	11243820	11244837	0	1	1017	0
chr16	11244302	11244748	H9_polyA+.26529	0	.	11244302	11244748	0	1	446	0
chr16	11244487	11244848	H1_rRNA-depleted_UCSD_REMC.52665	0	.	11244487	11244848	0	1	361	0
chr16	11248447	11250928	HIT000096894	0	-	11248447	11250928	0	1	2481	0
chr16	11249059	11250235	B_cells_Cheung.117203	0	.	11249059	11250235	0	1	1176	0
chr16	11354182	11354974	REMC_BreastStem.30470	0	.	11354182	11354974	0	1	792	0
chr16	11354200	11359674	B_cells_Cheung.117236	0	.	11354200	11359674	0	1	5474	0
chr16	11354455	11357582	B_Cells_Pritchard.2007315	0	+	11354455	11357582	0	1	3127	0
chr16	11355859	11357273	REMC_LuminalBreast.60034	0	.	11355859	11357273	0	1	1414	0
chr16	11355881	11357688	REMC_MyoepithelialBreast.56077	0	.	11355881	11357688	0	1	1807	0
chr16	11359649	11360475	H1_polyA+.68803	0	.	11359649	11360475	0	1	826	0
chr16	11359734	11360322	B_cells_Cheung.117237	0	.	11359734	11360322	0	1	588	0
chr16	11360359	11362690	REMC_MyoepithelialBreast.56080	0	.	11360359	11362690	0	1	2331	0
chr16	11360545	11364164	B_cells_Cheung.117238	0	.	11360545	11364164	0	1	3619	0
chr16	11360582	11363762	H1_polyA+.68804	0	.	11360582	11363762	0	1	3180	0
chr16	11360603	11364125	REMC_LuminalBreast.60036	0	.	11360603	11364125	0	1	3522	0
chr16	11364491	11365035	H1_polyA+.68805	0	.	11364491	11365035	0	1	544	0
chr16	11364719	11365023	B_cells_Cheung.117241	0	.	11364719	11365023	0	1	304	0
chr16	11365836	11369017	REMC_LuminalBreast.60038	0	.	11365836	11369017	0	1	3181	0
chr16	11369092	11371260	REMC_LuminalBreast.60039	0	.	11369092	11371260	0	1	2168	0
chr16	11369773	11371006	B_cells_Cheung.117247	0	.	11369773	11371006	0	1	1233	0
chr16	11371435	11372510	REMC_MyoepithelialBreast.56085	0	.	11371435	11372510	0	1	1075	0
chr16	11371502	11372432	H1_polyA+.68810	0	.	11371502	11372432	0	1	930	0
chr16	11371583	11372489	REMC_LuminalBreast.60040	0	.	11371583	11372489	0	1	906	0
chr16	11372654	11400686	REMC_LuminalBreast.61211	0	-	11372654	11400686	0	12	1442,142,123,110,529,185,98,185,169,165,162,112	0,12345,12589,12919,13591,15814,18808,18982,22094,25214,27051,27920
chr16	11372780	11375088	B_cells_Cheung.117251	0	.	11372780	11375088	0	1	2308	0
chr16	11373367	11395052	REMC_BreastStem.30476	0	-	11373367	11395052	0	12	729,142,123,115,529,185,98,185,196,93,185,304	0,11632,11876,12201,12878,15101,18095,18269,19656,20000,20307,21381
chr16	11373527	11393238	REMC_MyoepithelialBreast.56087	0	-	11373527	11393238	0	12	569,56,142,23,110,178,206,185,187,98,185,215	0,8579,11472,11816,12046,12718,13041,14941,16068,17935,18109,19496
chr16	11374091	11442433	pHIT000026508	0	-	11374091	11442433	0	32	5,106,123,110,178,206,185,98,185,196,93,185,169,165,162,114,141,122,211,138,82,113,167,208,51,162,236,309,133,93,120,138	0,10908,11152,11482,12154,12477,14377,17371,17545,18932,19276,19583,20657,23777,25614,26967,28531,29302,31969,34465,38511,40106,41607,44897,50195,51130,51374,52390,63012,66754,67989,68204
chr16	11374431	11374769	B_Cells_Pritchard.2007375	0	+	11374431	11374769	0	1	338	0
chr16	11376340	11377014	B_cells_Cheung.117255	0	.	11376340	11377014	0	1	674	0
chr16	11381870	11393464	B_Cells_Pritchard.2007399	0	+	11381870	11393464	0	4	866,597,4442,2386	0,872,2832,9208
chr16	11381972	11384528	B_cells_Cheung.117252	0	.	11381972	11384528	0	1	2556	0
chr16	11383564	11390265	B_cells_Cheung.117253	0	-	11383564	11390265	0	3	322,4491,670	0,1124,6031
chr16	11384812	11392075	prostate_normal.34327	0	-	11384812	11392075	0	6	325,118,110,1057,1206,613	0,436,761,1433,2635,6650
chr16	11384939	11385952	BT474_Burge_Thompson.19518	0	.	11384939	11385952	0	1	1013	0
chr16	11384951	11385502	A549_Myers.48547	0	.	11384951	11385502	0	1	551	0
chr16	11384999	11386958	prostate_carcinoma.58581	0	-	11384999	11386958	0	5	142,123,110,178,390	0,244,574,1246,1569
chr16	11385016	11385365	CD4_Plagnol_activated.37786	0	.	11385016	11385365	0	1	349	0
chr16	11385509	11387709	CD4_Plagnol_activated.37787	0	-	11385509	11387709	0	2	174,1464	0,736
chr16	11385606	11387253	MIP101.40536	0	.	11385606	11387253	0	1	1647	0
chr16	11386244	11388309	CD4_Plagnol_resting.36777	0	.	11386244	11388309	0	1	2065	0
chr16	11386262	11386778	H9_polyA+.26543	0	.	11386262	11386778	0	1	516	0
chr16	11386444	11387265	BT474_Burge_Thompson.19519	0	.	11386444	11387265	0	1	821	0
chr16	11387405	11393852	prostate_carcinoma.58583	0	-	11387405	11393852	0	4	1248,359,196,485	0,4057,5618,5962
chr16	11389830	11390452	REMC_LuminalBreast.61219	0	.	11389830	11390452	0	1	622	0
chr16	11390328	11390789	B_cells_Cheung.117257	0	.	11390328	11390789	0	1	461	0
chr16	11390404	11390766	H1_polyA+.68815	0	.	11390404	11390766	0	1	362	0
chr16	11390876	11394247	B_cells_Cheung.117258	0	-	11390876	11394247	0	2	2584,573	0,2798
chr16	11390876	11394247	B_cells_Cheung.117259	0	.	11390876	11394247	0	1	3371	0
chr16	11393049	11395121	prostate_normal.34328	0	-	11393049	11395121	0	4	170,93,245,373	0,318,616,1699
chr16	11393141	11393930	A549_Myers.48551	0	.	11393141	11393930	0	1	789	0
chr16	11393664	11394185	B_Cells_Pritchard.2007427	0	.	11393664	11394185	0	1	521	0
chr16	11394636	11395185	B_Cells_Pritchard.2007429	0	.	11394636	11395185	0	1	549	0
chr16	11394748	11395145	prostate_carcinoma.58587	0	.	11394748	11395145	0	1	397	0
chr16	11395575	11396910	B_Cells_Pritchard.2007433	0	.	11395575	11396910	0	1	1335	0
chr16	11395647	11398379	REMC_LuminalBreast.61210	0	.	11395647	11398379	0	1	2732	0
chr16	11395738	11398688	B_cells_Cheung.117262	0	.	11395738	11398688	0	1	2950	0
chr16	11397036	11398702	B_Cells_Pritchard.2007435	0	.	11397036	11398702	0	1	1666	0
chr16	11397622	11398129	A549_Myers.48553	0	.	11397622	11398129	0	1	507	0
chr16	11397842	11400952	prostate_normal.34329	0	-	11397842	11400952	0	3	191,162,123	0,1863,2987
chr16	11397873	11403940	REMC_BreastStem.30478	0	-	11397873	11403940	0	7	160,162,253,128,114,141,547	0,1832,2701,2956,3185,4749,5520
chr16	11398864	11399613	REMC_LuminalBreast.61221	0	.	11398864	11399613	0	1	749	0
chr16	11399546	11399957	prostate_carcinoma.58589	0	.	11399546	11399957	0	1	411	0
chr16	11400790	11401588	B_Cells_Pritchard.2007443	0	.	11400790	11401588	0	1	798	0
chr16	11400846	11405848	REMC_LuminalBreast.61223	0	.	11400846	11405848	0	1	5002	0
chr16	11401207	11401714	B_cells_Cheung.117264	0	.	11401207	11401714	0	1	507	0
chr16	11402533	11402888	A549_Myers.48555	0	.	11402533	11402888	0	1	355	0
chr16	11402636	11405848	REMC_LuminalBreast.61222	0	-	11402636	11405848	0	2	127,2455	0,757
chr16	11403921	11405674	prostate_carcinoma.58591	0	.	11403921	11405674	0	1	1753	0
chr16	11404504	11405766	REMC_MyoepithelialBreast.56097	0	.	11404504	11405766	0	1	1262	0
chr16	11404567	11404919	A549_Myers.48557	0	.	11404567	11404919	0	1	352	0
chr16	11404657	11405050	HIT000435140	0	-	11404657	11405050	0	1	393	0
chr16	11406027	11416377	B_cells_Cheung.117265	0	-	11406027	11416377	0	5	196,414,122,113,679	0,2253,6535,8170,9671
chr16	11406062	11414714	prostate_carcinoma.58592	0	-	11406062	11414714	0	2	161,517	0,8135
chr16	11406077	11412658	prostate_normal.34330	0	-	11406077	11412658	0	3	146,138,56	0,2479,6525
chr16	11408096	11408699	B_Cells_Pritchard.2007469	0	.	11408096	11408699	0	1	603	0
chr16	11408678	11419168	Rinn_00024581	0	-	11408678	11419168	0	5	16,83,114,168,181	0,3923,5518,7019,10309
chr16	11413016	11414133	REMC_LuminalBreast.61552	0	.	11413016	11414133	0	1	1117	0
chr16	11414226	11415241	prostate_normal.34331	0	.	11414226	11415241	0	1	1015	0
chr16	11414373	11415209	B_cells_Cheung.117270	0	.	11414373	11415209	0	1	836	0
chr16	11414861	11415483	prostate_carcinoma.58593	0	.	11414861	11415483	0	1	622	0
chr16	11415629	11416784	MIP101.40537	0	.	11415629	11416784	0	1	1155	0
chr16	11415631	11417293	B_Cells_Pritchard.2007479	0	.	11415631	11417293	0	1	1662	0
chr16	11415660	11416081	A549_Myers.48563	0	.	11415660	11416081	0	1	421	0
chr16	11415690	11417317	prostate_carcinoma.58594	0	.	11415690	11417317	0	1	1627	0
chr16	11415702	11416270	prostate_normal.34332	0	.	11415702	11416270	0	1	568	0
chr16	11416346	11417110	prostate_normal.34333	0	.	11416346	11417110	0	1	764	0
chr16	11416435	11417331	B_cells_Cheung.117271	0	.	11416435	11417331	0	1	896	0
chr16	11416619	11417309	REMC_BreastStem.30480	0	.	11416619	11417309	0	1	690	0
chr16	11416885	11417200	A549_Myers.48564	0	.	11416885	11417200	0	1	315	0
chr16	11417589	11419418	prostate_carcinoma.58595	0	.	11417589	11419418	0	1	1829	0
chr16	11417978	11418484	BT474_Burge_Thompson.19521	0	.	11417978	11418484	0	1	506	0
chr16	11418015	11418470	B_cells_Cheung.117272	0	.	11418015	11418470	0	1	455	0
chr16	11418571	11424847	B_cells_Cheung.117273	0	-	11418571	11424847	0	2	625,312	0,5964
chr16	11418696	11419219	B_Cells_Pritchard.2007483	0	.	11418696	11419219	0	1	523	0
chr16	11418804	11419168	CD4_Plagnol_resting.36778	0	.	11418804	11419168	0	1	364	0
chr16	11419220	11420620	REMC_LuminalBreast.61553	0	.	11419220	11420620	0	1	1400	0
chr16	11423643	11426727	A549_Myers.48567	0	-	11423643	11426727	0	2	60,246	0,2838
chr16	11423969	11425998	B_Cells_Pritchard.2007497	0	.	11423969	11425998	0	1	2029	0
chr16	11424415	11424825	A549_Myers.48569	0	.	11424415	11424825	0	1	410	0
chr16	11424531	11426945	prostate_carcinoma.58596	0	-	11424531	11426945	0	2	1170,464	0,1950
chr16	11425038	11425970	BT474_Burge_Thompson.19522	0	.	11425038	11425970	0	1	932	0
chr16	11425102	11425705	B_cells_Cheung.117274	0	-	11425102	11425705	0	2	281,240	0,363
chr16	11425301	11425708	prostate_normal.34335	0	.	11425301	11425708	0	1	407	0
chr16	11426379	11426855	B_Cells_Pritchard.2007499	0	.	11426379	11426855	0	1	476	0
chr16	11428618	11429359	H1_polyA+.68816	0	.	11428618	11429359	0	1	741	0
chr16	11428756	11431576	REMC_LuminalBreast.61555	0	.	11428756	11431576	0	1	2820	0
chr16	11432277	11432591	prostate_carcinoma.58597	0	.	11432277	11432591	0	1	314	0
chr16	11432402	11437221	B_cells_Cheung.117276	0	-	11432402	11437221	0	2	184,203	0,4616
chr16	11440843	11441200	B_Cells_Pritchard.2007545	0	.	11440843	11441200	0	1	357	0
chr16	11494297	11495121	REMC_BreastStem.30671	0	.	11494297	11495121	0	1	824	0
chr16	11495692	11496311	B_cells_Cheung.117311	0	.	11495692	11496311	0	1	619	0
chr16	11496450	11497003	B_cells_Cheung.117312	0	.	11496450	11497003	0	1	553	0
chr16	11496831	11499750	REMC_MyoepithelialBreast.56112	0	.	11496831	11499750	0	1	2919	0
chr16	11497676	11499750	REMC_MyoepithelialBreast.56113	0	-	11497676	11499750	0	2	678,1284	0,790
chr16	11497688	11498607	H1_polyA+.68829	0	.	11497688	11498607	0	1	919	0
chr16	11497715	11498218	A549_Myers.48574	0	.	11497715	11498218	0	1	503	0
chr16	11497726	11498655	prostate_carcinoma.58607	0	.	11497726	11498655	0	1	929	0
chr16	11497831	11498846	REMC_BreastStem.30673	0	.	11497831	11498846	0	1	1015	0
chr16	11498765	11499135	A549_Myers.48576	0	.	11498765	11499135	0	1	370	0
chr16	11500705	11501625	REMC_BreastStem.30674	0	.	11500705	11501625	0	1	920	0
chr16	11504726	11505642	CD4_Plagnol_resting.36779	0	.	11504726	11505642	0	1	916	0
chr16	11504760	11505112	A549_Myers.48578	0	.	11504760	11505112	0	1	352	0
chr16	11507691	11516735	REMC_BreastStem.30670	0	-	11507691	11516735	0	2	2521,1020	0,8024
chr16	11507869	11508350	B_cells_Cheung.117320	0	.	11507869	11508350	0	1	481	0
chr16	11510057	11510483	B_cells_Cheung.117323	0	.	11510057	11510483	0	1	426	0
chr16	11510726	11511066	REMC_LuminalBreast.61559	0	.	11510726	11511066	0	1	340	0
chr16	11511138	11514503	REMC_LuminalBreast.61560	0	.	11511138	11514503	0	1	3365	0
chr16	11511185	11513662	REMC_MyoepithelialBreast.56115	0	.	11511185	11513662	0	1	2477	0
chr16	11800851	11803830	B_cells_Cheung.117380	0	.	11800851	11803830	0	1	2979	0
chr16	11800879	11801260	prostate_normal.34452	0	.	11800879	11801260	0	1	381	0
chr16	11801315	11802132	REMC_MyoepithelialBreast.56071	0	.	11801315	11802132	0	1	817	0
chr16	11802257	11803775	prostate_carcinoma.58697	0	.	11802257	11803775	0	1	1518	0
chr16	11806485	11807208	prostate_carcinoma.58656	0	.	11806485	11807208	0	1	723	0
chr16	11806524	11818612	B_Cells_Pritchard.2017489	0	+	11806524	11818612	0	2	717,73	0,12015
chr16	11821186	11821852	B_Cells_Pritchard.2017941	0	+	11821186	11821852	0	1	666	0
chr16	11821187	11829806	HIT000302161	0	-	11821187	11829806	0	2	468,127	0,8492
chr16	11821192	11830190	NR_024050	0	-	11821192	11830190	0	3	463,70,134	0,8487,8864
chr16	11821192	11830190	NR_024049	0	-	11821192	11830190	0	4	463,122,213,511	0,1799,4692,8487
chr16	11821194	11830190	ENST00000505806	0	-	11821194	11830190	0	4	461,122,213,511	0,1797,4690,8485
chr16	11821198	11821696	T47D_Burge_Thompson.16932	0	.	11821198	11821696	0	1	498	0
chr16	11821207	11830169	HIT000285202	0	-	11821207	11830169	0	4	448,122,213,490	0,1784,4677,8472
chr16	11827344	11828286	REMC_LuminalBreast.60156	0	.	11827344	11828286	0	1	942	0
chr16	11833166	11833908	REMC_LuminalBreast.60157	0	.	11833166	11833908	0	1	742	0
chr16	11856826	11860257	REMC_LuminalBreast.60642	0	.	11856826	11860257	0	1	3431	0
chr16	11856842	11860677	REMC_MyoepithelialBreast.56304	0	.	11856842	11860677	0	1	3835	0
chr16	11857406	11859868	REMC_BreastStem.30784	0	.	11857406	11859868	0	1	2462	0
chr16	11860328	11860809	REMC_LuminalBreast.60643	0	.	11860328	11860809	0	1	481	0
chr16	11867854	11868251	CD4_Plagnol_resting.36837	0	.	11867854	11868251	0	1	397	0
chr16	12580799	12586960	B_Cells_Pritchard.2009531	0	+	12580799	12586960	0	6	378,8,337,72,1346,54	0,1510,3687,4059,4747,6107
chr16	12598669	12601166	B_cells_Cheung.118277	0	.	12598669	12601166	0	1	2497	0
chr16	12598910	12619018	B_Cells_Pritchard.2009605	0	+	12598910	12619018	0	2	1077,47	0,20061
chr16	12601270	12602013	B_cells_Cheung.118278	0	.	12601270	12602013	0	1	743	0
chr16	12602132	12603669	B_cells_Cheung.118279	0	.	12602132	12603669	0	1	1537	0
chr16	12602664	12603203	A549_Myers.48661	0	.	12602664	12603203	0	1	539	0
chr16	12603815	12605311	B_cells_Cheung.118280	0	.	12603815	12605311	0	1	1496	0
chr16	12610993	12612850	B_cells_Cheung.118282	0	.	12610993	12612850	0	1	1857	0
chr16	12612997	12617377	B_cells_Cheung.118283	0	.	12612997	12617377	0	1	4380	0
chr16	12636990	12637393	B_cells_Cheung.117479	0	.	12636990	12637393	0	1	403	0
chr16	12650651	12651344	B_Cells_Pritchard.2009903	0	.	12650651	12651344	0	1	693	0
chr16	12650996	12651341	B_cells_Cheung.117480	0	.	12650996	12651341	0	1	345	0
chr16	12651670	12652492	B_Cells_Pritchard.2009905	0	.	12651670	12652492	0	1	822	0
chr16	12651800	12652514	B_cells_Cheung.117481	0	.	12651800	12652514	0	1	714	0
chr16	12899078	12901741	H1_polyA+.68866	0	.	12899078	12901741	0	1	2663	0
chr16	13409888	13410896	H1_polyA+.69098	0	.	13409888	13410896	0	1	1008	0
chr16	13410053	13410648	B_Cells_Pritchard.2012339	0	.	13410053	13410648	0	1	595	0
chr16	13418257	13420313	H1_polyA+.69104	0	.	13418257	13420313	0	1	2056	0
chr16	13418818	13421334	B_Cells_Pritchard.2012359	0	.	13418818	13421334	0	1	2516	0
chr16	13419765	13420415	liver_polyA+.81475	0	.	13419765	13420415	0	1	650	0
chr16	13419767	13420396	H9_polyA+.26652	0	.	13419767	13420396	0	1	629	0
chr16	13428870	13429214	liver_polyA+.81478	0	.	13428870	13429214	0	1	344	0
chr16	13452311	13453370	B_Cells_Pritchard.2012491	0	-	13452311	13453370	0	1	1059	0
chr16	13452808	13453162	H1_rRNA-depleted_UCSD_REMC.52821	0	.	13452808	13453162	0	1	354	0
chr16	13478265	13486618	B_cells_Cheung.117639	0	.	13478265	13486618	0	1	8353	0
chr16	13484049	13486561	H1_polyA+.69122	0	.	13484049	13486561	0	1	2512	0
chr16	13490319	13496703	B_cells_Cheung.117640	0	.	13490319	13496703	0	1	6384	0
chr16	13490395	13493053	H1_polyA+.69125	0	.	13490395	13493053	0	1	2658	0
chr16	13493286	13498785	H1_polyA+.69126	0	.	13493286	13498785	0	1	5499	0
chr16	13494544	13496702	B_Cells_Pritchard.2012657	0	.	13494544	13496702	0	1	2158	0
chr16	13503306	13509406	B_cells_Cheung.117645	0	.	13503306	13509406	0	1	6100	0
chr16	13504112	13508426	H1_polyA+.69130	0	.	13504112	13508426	0	1	4314	0
chr16	13508521	13509431	H1_polyA+.69131	0	.	13508521	13509431	0	1	910	0
chr16	13514177	13515377	H1_polyA+.69133	0	.	13514177	13515377	0	1	1200	0
chr16	13524680	13527776	H1_polyA+.69141	0	.	13524680	13527776	0	1	3096	0
chr16	13525308	13525986	B_cells_Cheung.117655	0	.	13525308	13525986	0	1	678	0
chr16	13528001	13531403	H1_polyA+.69142	0	.	13528001	13531403	0	1	3402	0
chr16	13531650	13535176	H1_polyA+.69143	0	.	13531650	13535176	0	1	3526	0
chr16	13533512	13534404	B_cells_Cheung.117661	0	.	13533512	13534404	0	1	892	0
chr16	13541820	13545693	H1_polyA+.69148	0	.	13541820	13545693	0	1	3873	0
chr16	13542369	13544697	B_cells_Cheung.117668	0	.	13542369	13544697	0	1	2328	0
chr16	13546212	13549011	prostate_carcinoma.58764	0	.	13546212	13549011	0	1	2799	0
chr16	13546350	13547668	B_cells_Cheung.117671	0	.	13546350	13547668	0	1	1318	0
chr16	13546706	13549115	H1_polyA+.69150	0	.	13546706	13549115	0	1	2409	0
chr16	13552456	13553598	H1_polyA+.69153	0	.	13552456	13553598	0	1	1142	0
chr16	13558011	13562191	H1_polyA+.69156	0	.	13558011	13562191	0	1	4180	0
chr16	13562214	13563730	B_cells_Cheung.117676	0	.	13562214	13563730	0	1	1516	0
chr16	13612848	13616034	H1_polyA+.69164	0	.	13612848	13616034	0	1	3186	0
chr16	13616181	13621069	H1_polyA+.69165	0	.	13616181	13621069	0	1	4888	0
chr16	13619358	13619869	H9_polyA+.26655	0	.	13619358	13619869	0	1	511	0
chr16	13619387	13620145	B_cells_Cheung.117682	0	.	13619387	13620145	0	1	758	0
chr16	13620197	13620906	B_cells_Cheung.117683	0	.	13620197	13620906	0	1	709	0
chr16	13644698	13645206	A549_Myers.48677	0	.	13644698	13645206	0	1	508	0
chr16	13817712	13819319	prostate_carcinoma.58780	0	.	13817712	13819319	0	1	1607	0
chr16	13840390	13840968	B_Cells_Pritchard.2013503	0	.	13840390	13840968	0	1	578	0
chr16	13841726	13842604	prostate_carcinoma.58785	0	.	13841726	13842604	0	1	878	0
chr16	13883051	13900031	HepG2_Caltech_ENCODE.21585	0	-	13883051	13900031	0	2	1192,279	0,16701
chr16	13883183	13900143	prostate_carcinoma.58794	0	-	13883183	13900143	0	2	1060,391	0,16569
chr16	13883185	13884053	prostate_normal.34461	0	.	13883185	13884053	0	1	868	0
chr16	13907207	13909390	HepG2_Caltech_ENCODE.21589	0	.	13907207	13909390	0	1	2183	0
chr16	13957735	13962908	pHIT000026528	0	+	13957735	13962908	0	3	185,93,172	0,719,5001
chr16	13957735	14016975	pHIT000089050	0	+	13957735	14016975	0	4	185,93,172,189	0,719,5001,59051
chr16	14000614	14001722	B_Cells_Pritchard.2013983	0	.	14000614	14001722	0	1	1108	0
chr16	14000848	14001191	B_cells_Cheung.117696	0	.	14000848	14001191	0	1	343	0
chr16	14002577	14003259	B_cells_Cheung.117697	0	.	14002577	14003259	0	1	682	0
chr16	14002597	14003450	B_Cells_Pritchard.2013987	0	.	14002597	14003450	0	1	853	0
chr16	14002695	14003441	prostate_carcinoma.58804	0	.	14002695	14003441	0	1	746	0
chr16	14005350	14006073	B_Cells_Pritchard.2013995	0	.	14005350	14006073	0	1	723	0
chr16	14008352	14011183	REMC_BreastStem.30589	0	.	14008352	14011183	0	1	2831	0
chr16	14008405	14017358	Rinn_00024586	0	-	14008405	14017358	0	3	2750,88,140	0,6323,8813
chr16	14011353	14017352	Rinn_00024587	0	-	14011353	14017352	0	3	150,88,134	0,3375,5865
chr16	14015612	14016235	REMC_BreastStem.30590	0	.	14015612	14016235	0	1	623	0
chr16	14020497	14022992	REMC_LuminalBreast.60190	0	.	14020497	14022992	0	1	2495	0
chr16	14038378	14039271	REMC_LuminalBreast.60193	0	.	14038378	14039271	0	1	893	0
chr16	14042465	14043572	REMC_LuminalBreast.60197	0	.	14042465	14043572	0	1	1107	0
chr16	14043761	14047671	REMC_LuminalBreast.60199	0	.	14043761	14047671	0	1	3910	0
chr16	14052311	14053360	REMC_MyoepithelialBreast.56138	0	.	14052311	14053360	0	1	1049	0
chr16	14052349	14053293	REMC_LuminalBreast.60203	0	.	14052349	14053293	0	1	944	0
chr16	14069728	14070423	B_Cells_Pritchard.2014153	0	.	14069728	14070423	0	1	695	0
chr16	14273068	14274938	REMC_MyoepithelialBreast.56149	0	.	14273068	14274938	0	1	1870	0
chr16	14278765	14279578	REMC_LuminalBreast.60311	0	.	14278765	14279578	0	1	813	0
chr16	14279679	14280743	REMC_LuminalBreast.60312	0	.	14279679	14280743	0	1	1064	0
chr16	14284537	14286762	REMC_LuminalBreast.60314	0	.	14284537	14286762	0	1	2225	0
chr16	14286248	14289322	H1_polyA+.69220	0	.	14286248	14289322	0	1	3074	0
chr16	14286413	14288521	B_Cells_Pritchard.2014777	0	+	14286413	14288521	0	1	2108	0
chr16	14286413	14302211	B_Cells_Pritchard.2014775	0	-	14286413	14302211	0	2	1008,25	0,15773
chr16	14286690	14287552	A549_Myers.48708	0	.	14286690	14287552	0	1	862	0
chr16	14287349	14288133	MeWo_Garraway.21232	0	.	14287349	14288133	0	1	784	0
chr16	14287561	14288613	B_cells_Cheung.117792	0	.	14287561	14288613	0	1	1052	0
chr16	14287726	14288584	melanoma_Garraway_short_term_cultures.40844	0	.	14287726	14288584	0	1	858	0
chr16	14288322	14304423	A549_Myers.48711	0	+	14288322	14304423	0	3	8,946,99	0,14739,16002
chr16	14290037	14291262	REMC_LuminalBreast.60315	0	.	14290037	14291262	0	1	1225	0
chr16	14290079	14291050	melanoma_Garraway_short_term_cultures.40846	0	.	14290079	14291050	0	1	971	0
chr16	14302428	14303996	HepG2_Caltech_ENCODE.21609	0	.	14302428	14303996	0	1	1568	0
chr16	14303616	14304050	prostate_carcinoma.58844	0	.	14303616	14304050	0	1	434	0
chr16	14303617	14303953	breast_Burge.23281	0	.	14303617	14303953	0	1	336	0
chr16	14303619	14303947	adipose_Burge.22619	0	.	14303619	14303947	0	1	328	0
chr16	14308230	14309571	HeLa_polyA+_Chen.21543	0	.	14308230	14309571	0	1	1341	0
chr16	14308531	14309755	REMC_LuminalBreast.60319	0	.	14308531	14309755	0	1	1224	0
chr16	14308614	14309821	A549_Myers.48714	0	.	14308614	14309821	0	1	1207	0
chr16	14310894	14311554	A549_Myers.48715	0	.	14310894	14311554	0	1	660	0
chr16	14318597	14320314	B_cells_Cheung.117799	0	.	14318597	14320314	0	1	1717	0
chr16	14318717	14320288	HepG2_Caltech_ENCODE.21616	0	.	14318717	14320288	0	1	1571	0
chr16	14322667	14328308	B_cells_Cheung.117796	0	.	14322667	14328308	0	1	5641	0
chr16	14322809	14326587	H1_polyA+.69231	0	.	14322809	14326587	0	1	3778	0
chr16	14324311	14325527	REMC_LuminalBreast.60322	0	.	14324311	14325527	0	1	1216	0
chr16	14324373	14328310	HepG2_Caltech_ENCODE.21615	0	.	14324373	14328310	0	1	3937	0
chr16	14324405	14325092	T47D_Burge_Thompson.16967	0	.	14324405	14325092	0	1	687	0
chr16	14324410	14325228	prostate_carcinoma.58852	0	.	14324410	14325228	0	1	818	0
chr16	14324413	14333046	B_Cells_Pritchard.2014847	0	+	14324413	14333046	0	5	3870,83,990,1140,1106	0,4636,4774,6281,7527
chr16	14324440	14325519	HeLa_polyA+_Chen.21555	0	.	14324440	14325519	0	1	1079	0
chr16	14324443	14326068	melanoma_Garraway_short_term_cultures.40855	0	.	14324443	14326068	0	1	1625	0
chr16	14324508	14325337	MIP101.40690	0	.	14324508	14325337	0	1	829	0
chr16	14328803	14329165	REMC_LuminalBreast.60324	0	.	14328803	14329165	0	1	362	0
chr16	14328810	14329132	brain_AmbionMAQC.25955	0	.	14328810	14329132	0	1	322	0
chr16	14329197	14332413	HepG2_Caltech_ENCODE.21621	0	.	14329197	14332413	0	1	3216	0
chr16	14329262	14330110	MIP101.40692	0	.	14329262	14330110	0	1	848	0
chr16	14329319	14330102	BT474_Burge_Thompson.19586	0	.	14329319	14330102	0	1	783	0
chr16	14330451	14332618	REMC_LuminalBreast.60326	0	.	14330451	14332618	0	1	2167	0
chr16	14330568	14331841	B_cells_Cheung.117806	0	.	14330568	14331841	0	1	1273	0
chr16	14330597	14331813	HeLa_polyA+_Chen.21538	0	.	14330597	14331813	0	1	1216	0
chr16	14330597	14332691	H1_polyA+.69236	0	.	14330597	14332691	0	1	2094	0
chr16	14330689	14331813	BT20_Thompson.12649	0	.	14330689	14331813	0	1	1124	0
chr16	14330708	14331825	MCF7_Burge_Thompson.18073	0	.	14330708	14331825	0	1	1117	0
chr16	14330743	14331646	REMC_BreastStem.30594	0	.	14330743	14331646	0	1	903	0
chr16	14330748	14331828	prostate_carcinoma.58857	0	.	14330748	14331828	0	1	1080	0
chr16	14330754	14331839	melanoma_Garraway_short_term_cultures.40859	0	.	14330754	14331839	0	1	1085	0
chr16	14330778	14331791	BT474_Burge_Thompson.19587	0	.	14330778	14331791	0	1	1013	0
chr16	14330814	14331814	MDAMB468_Thompson.14226	0	.	14330814	14331814	0	1	1000	0
chr16	14330821	14331820	CD4_Plagnol_activated.37907	0	.	14330821	14331820	0	1	999	0
chr16	14330829	14331842	MCF10A_Thompson.12888	0	.	14330829	14331842	0	1	1013	0
chr16	14330831	14331816	prostate_normal.34489	0	.	14330831	14331816	0	1	985	0
chr16	14330832	14331457	CD4_Plagnol_resting.36941	0	.	14330832	14331457	0	1	625	0
chr16	14330834	14331631	REMC_MyoepithelialBreast.56152	0	.	14330834	14331631	0	1	797	0
chr16	14330840	14331783	T47D_Burge_Thompson.16972	0	.	14330840	14331783	0	1	943	0
chr16	14330998	14331836	brain_AmbionMAQC.25957	0	.	14330998	14331836	0	1	838	0
chr16	14335626	14338083	B_cells_Cheung.117808	0	.	14335626	14338083	0	1	2457	0
chr16	14335665	14340751	B_Cells_Pritchard.2014853	0	-	14335665	14340751	0	4	1953,124,96,726	0,4028,4204,4360
chr16	14338418	14339171	B_Cells_Pritchard.2014861	0	-	14338418	14339171	0	1	753	0
chr16	14338437	14339944	B_cells_Cheung.117809	0	.	14338437	14339944	0	1	1507	0
chr16	14345622	14348946	B_Cells_Pritchard.2014875	0	-	14345622	14348946	0	1	3324	0
chr16	14346999	14347311	B_cells_Cheung.117817	0	.	14346999	14347311	0	1	312	0
chr16	14358449	14359203	B_Cells_Pritchard.2014921	0	.	14358449	14359203	0	1	754	0
chr16	14364466	14371624	HIT000272970	0	+	14364466	14371624	0	2	187,331	0,6827
chr16	14365476	14366727	B_Cells_Pritchard.2014947	0	.	14365476	14366727	0	1	1251	0
chr16	14369526	14370257	B_Cells_Pritchard.2014959	0	.	14369526	14370257	0	1	731	0
chr16	14370344	14371743	MCF7_Burge_Thompson.18076	0	.	14370344	14371743	0	1	1399	0
chr16	14370653	14371010	A549_Myers.48733	0	.	14370653	14371010	0	1	357	0
chr16	14375713	14376064	HeLa_polyA+_Chen.21539	0	.	14375713	14376064	0	1	351	0
chr16	14377157	14377596	HeLa_polyA+_Chen.21540	0	.	14377157	14377596	0	1	439	0
chr16	14379736	14388630	B_Cells_Pritchard.2015009	0	-	14379736	14388630	0	2	421,235	0,8659
chr16	14393349	14394486	REMC_LuminalBreast.60329	0	.	14393349	14394486	0	1	1137	0
chr16	14394145	14394973	B_Cells_Pritchard.2015053	0	-	14394145	14394973	0	1	828	0
chr16	14394386	14394927	MIP101.40695	0	.	14394386	14394927	0	1	541	0
chr16	14401056	14403130	HepG2_Caltech_ENCODE.21624	0	.	14401056	14403130	0	1	2074	0
chr16	14401149	14401792	B_Cells_Pritchard.2015081	0	.	14401149	14401792	0	1	643	0
chr16	14401232	14401885	B_cells_Cheung.117832	0	.	14401232	14401885	0	1	653	0
chr16	14420340	14420789	melanoma_Garraway_short_term_cultures.40862	0	.	14420340	14420789	0	1	449	0
chr16	14421590	14423111	B_cells_Cheung.117840	0	.	14421590	14423111	0	1	1521	0
chr16	14421647	14422075	CD4_Plagnol_resting.36943	0	.	14421647	14422075	0	1	428	0
chr16	14424636	14425706	B_cells_Cheung.117845	0	.	14424636	14425706	0	1	1070	0
chr16	14425967	14426375	B_cells_Cheung.117846	0	.	14425967	14426375	0	1	408	0
chr16	14962253	14963114	REMC_MyoepithelialBreast.56190	0	.	14962253	14963114	0	1	861	0
chr16	14971796	14972160	brain_AmbionMAQC.25982	0	.	14971796	14972160	0	1	364	0
chr16	15419227	15421016	REMC_LuminalBreast.60437	0	.	15419227	15421016	0	1	1789	0
chr16	15425611	15426340	REMC_LuminalBreast.60439	0	.	15425611	15426340	0	1	729	0
chr16	15426828	15427478	REMC_LuminalBreast.60440	0	.	15426828	15427478	0	1	650	0
chr16	15896994	15897637	B_cells_Cheung.118166	0	.	15896994	15897637	0	1	643	0
chr16	15898709	15899721	B_Cells_Pritchard.2017633	0	-	15898709	15899721	0	1	1012	0
chr16	15899147	15899512	H1_polyA+.69523	0	.	15899147	15899512	0	1	365	0
chr16	15903912	15904818	B_Cells_Pritchard.2017655	0	-	15903912	15904818	0	1	906	0
chr16	16146285	16147556	HepG2_Caltech_ENCODE.21744	0	.	16146285	16147556	0	1	1271	0
chr16	16146421	16147221	CD4_Plagnol_activated.38328	0	.	16146421	16147221	0	1	800	0
chr16	16146425	16147195	melanoma_Garraway_short_term_cultures.40994	0	.	16146425	16147195	0	1	770	0
chr16	16146426	16147228	MCF10A_Thompson.12916	0	.	16146426	16147228	0	1	802	0
chr16	16146437	16147223	CD4_Plagnol_resting.37550	0	.	16146437	16147223	0	1	786	0
chr16	16146442	16147212	MIP101.40809	0	.	16146442	16147212	0	1	770	0
chr16	16146459	16147203	H9_polyA+.26743	0	.	16146459	16147203	0	1	744	0
chr16	16146633	16147230	MCF7_Burge_Thompson.18181	0	.	16146633	16147230	0	1	597	0
chr16	16147750	16148528	A549_Myers.48870	0	.	16147750	16148528	0	3	233,144,236	0,331,542
chr16	16148473	16149401	HepG2_Caltech_ENCODE.21746	0	.	16148473	16149401	0	1	928	0
chr16	16149449	16149907	B_cells_Cheung.118186	0	.	16149449	16149907	0	1	458	0
chr16	16309884	16311360	HIT000097608_03	0	-	16309884	16311360	0	1	1476	0
chr16	16564541	16581478	K562.26751	0	+	16564541	16581478	0	2	132,189	0,16748
chr16	16577757	16578084	K562.26752	0	.	16577757	16578084	0	1	327	0
chr16	16766779	16770372	K562.26763	0	.	16766779	16770372	0	1	3593	0
chr16	16768404	16768764	melanoma_Garraway_short_term_cultures.41009	0	.	16768404	16768764	0	1	360	0
chr16	16781882	16791126	K562.26788	0	.	16781882	16791126	0	1	9244	0
chr16	16801684	16803160	melanoma_Garraway_short_term_cultures.41011	0	.	16801684	16803160	0	1	1476	0
chr16	16810210	16810885	melanoma_Garraway_short_term_cultures.41013	0	.	16810210	16810885	0	1	675	0
chr16	16813574	16813961	MB435_Burge.24694	0	.	16813574	16813961	0	1	387	0
chr16	17014955	17027720	B_Cells_Pritchard.2019055	0	+	17014955	17027720	0	2	502,649	0,12116
chr16	17036632	17040627	B_cells_Cheung.118532	0	.	17036632	17040627	0	1	3995	0
chr16	17038331	17040731	B_Cells_Pritchard.2019081	0	.	17038331	17040731	0	1	2400	0
chr16	17040731	17044303	B_cells_Cheung.118533	0	.	17040731	17044303	0	1	3572	0
chr16	17048067	17049057	B_cells_Cheung.118534	0	.	17048067	17049057	0	1	990	0
chr16	17054764	17057066	B_Cells_Pritchard.2019117	0	+	17054764	17057066	0	2	1199,50	0,2252
chr16	17055086	17055925	B_cells_Cheung.118537	0	.	17055086	17055925	0	1	839	0
chr16	17055398	17056064	BT474_Burge_Thompson.19646	0	.	17055398	17056064	0	1	666	0
chr16	17062476	17063352	B_cells_Cheung.118541	0	.	17062476	17063352	0	1	876	0
chr16	17062540	17063174	B_Cells_Pritchard.2019145	0	.	17062540	17063174	0	1	634	0
chr16	17063550	17071366	B_cells_Cheung.118542	0	.	17063550	17071366	0	1	7816	0
chr16	17064019	17065684	B_Cells_Pritchard.2019151	0	.	17064019	17065684	0	1	1665	0
chr16	17069904	17071841	B_Cells_Pritchard.2019159	0	.	17069904	17071841	0	1	1937	0
chr16	17072067	17072965	B_Cells_Pritchard.2019161	0	.	17072067	17072965	0	1	898	0
chr16	17073101	17075047	B_Cells_Pritchard.2019163	0	.	17073101	17075047	0	1	1946	0
chr16	17077849	17078801	B_Cells_Pritchard.2019175	0	.	17077849	17078801	0	1	952	0
chr16	17091999	17093770	REMC_BreastStem.30708	0	.	17091999	17093770	0	1	1771	0
chr16	17098059	17098793	REMC_MyoepithelialBreast.56364	0	.	17098059	17098793	0	1	734	0
chr16	17100326	17100649	B_Cells_Pritchard.2019357	0	.	17100326	17100649	0	1	323	0
chr16	17101179	17101864	B_Cells_Pritchard.2019361	0	.	17101179	17101864	0	1	685	0
chr16	17485002	17485409	B_Cells_Pritchard.2020493	0	.	17485002	17485409	0	1	407	0
chr16	17826675	17864363	K562.26808	0	-	17826675	17864363	0	5	922,51,1519,100,531	0,5058,6444,35772,37157
chr16	17854818	17855436	K562.26818	0	.	17854818	17855436	0	1	618	0
chr16	17962953	17963729	HIT000192715	0	-	17962953	17963729	0	1	776	0
chr16	18000249	18001703	K562.26831	0	.	18000249	18001703	0	1	1454	0
chr16	18010753	18011608	K562.26833	0	.	18010753	18011608	0	1	855	0
chr16	18059943	18062067	K562.26841	0	.	18059943	18062067	0	1	2124	0
chr16	18721598	18722619	CD4_Plagnol_resting.37380	0	.	18721598	18722619	0	1	1021	0
chr16	18849796	18850295	REMC_LuminalBreast.60704	0	.	18849796	18850295	0	1	499	0
chr16	18854506	18859476	REMC_LuminalBreast.60706	0	.	18854506	18859476	0	1	4970	0
chr16	18857240	18858172	B_Cells_Pritchard.2022595	0	.	18857240	18858172	0	1	932	0
chr16	18860129	18860571	B_Cells_Pritchard.2022615	0	-	18860129	18860571	0	1	442	0
chr16	18861694	18863030	REMC_LuminalBreast.60708	0	.	18861694	18863030	0	1	1336	0
chr16	18865113	18866389	REMC_LuminalBreast.60710	0	.	18865113	18866389	0	1	1276	0
chr16	18875374	18876795	REMC_LuminalBreast.60715	0	.	18875374	18876795	0	1	1421	0
chr16	19005270	19005940	A549_Myers.48963	0	.	19005270	19005940	0	1	670	0
chr16	19008281	19009014	BT474_Burge_Thompson.19683	0	.	19008281	19009014	0	1	733	0
chr16	19011053	19011982	REMC_LuminalBreast.60743	0	.	19011053	19011982	0	1	929	0
chr16	19011102	19011990	REMC_BreastStem.30800	0	.	19011102	19011990	0	1	888	0
chr16	19042200	19044165	REMC_LuminalBreast.60747	0	.	19042200	19044165	0	1	1965	0
chr16	19044671	19045483	REMC_BreastStem.30805	0	.	19044671	19045483	0	1	812	0
chr16	19047513	19048086	REMC_MyoepithelialBreast.56553	0	.	19047513	19048086	0	1	573	0
chr16	19054168	19055732	REMC_BreastStem.30807	0	.	19054168	19055732	0	1	1564	0
chr16	19054553	19055172	B_cells_Cheung.118454	0	.	19054553	19055172	0	1	619	0
chr16	19054580	19055172	B_Cells_Pritchard.2023185	0	.	19054580	19055172	0	1	592	0
chr16	19054668	19055194	prostate_normal.34677	0	.	19054668	19055194	0	1	526	0
chr16	19055294	19055642	A549_Myers.48970	0	.	19055294	19055642	0	1	348	0
chr16	19219385	19220373	prostate_carcinoma.59248	0	.	19219385	19220373	0	1	988	0
chr16	19223517	19224674	prostate_carcinoma.59244	0	.	19223517	19224674	0	1	1157	0
chr16	19230116	19233004	H1_polyA+.69806	0	.	19230116	19233004	0	1	2888	0
chr16	19230131	19231000	prostate_carcinoma.59252	0	.	19230131	19231000	0	1	869	0
chr16	19232887	19236499	prostate_carcinoma.59253	0	.	19232887	19236499	0	1	3612	0
chr16	19240563	19242478	prostate_normal.34690	0	.	19240563	19242478	0	1	1915	0
chr16	19253021	19256605	Rinn_00024341	0	+	19253021	19256605	0	3	86,391,804	0,994,2780
chr16	19255078	19256659	prostate_carcinoma.59264	0	.	19255078	19256659	0	1	1581	0
chr16	19262954	19266107	prostate_carcinoma.59259	0	.	19262954	19266107	0	1	3153	0
chr16	19289947	19290815	prostate_normal.34702	0	.	19289947	19290815	0	1	868	0
chr16	19319476	19320041	H1_polyA+.69807	0	.	19319476	19320041	0	1	565	0
chr16	19906647	19907663	H1_polyA+.69866	0	.	19906647	19907663	0	1	1016	0
chr16	19908189	19910285	H1_polyA+.69867	0	.	19908189	19910285	0	1	2096	0
chr16	20028984	20077565	XR_037711	0	+	20028984	20077565	0	9	59,129,120,165,432,450,49,1015,1069	0,4367,45189,45399,45565,45998,46448,46497,47512
chr16	20074172	20077565	XR_036867	0	+	20074172	20077565	0	7	121,165,432,450,49,1015,1069	0,211,377,810,1260,1309,2324
chr16	20074562	20075412	pHIT000115368	0	+	20074562	20075412	0	3	79,215,139	0,449,711
chr16	21147110	21148104	prostate_carcinoma.59393	0	.	21147110	21148104	0	1	994	0
chr16	21239762	21241161	B_cells_Cheung.118890	0	.	21239762	21241161	0	1	1399	0
chr16	21252522	21252947	REMC_LuminalBreast.60971	0	.	21252522	21252947	0	1	425	0
chr16	21421228	21421666	K562.26994	0	.	21421228	21421666	0	1	438	0
chr16	21421844	21422208	REMC_BreastStem.30972	0	.	21421844	21422208	0	1	364	0
chr16	21425512	21427430	REMC_MyoepithelialBreast.56674	0	.	21425512	21427430	0	1	1918	0
chr16	21425537	21432037	REMC_LuminalBreast.60994	0	.	21425537	21432037	0	1	6500	0
chr16	21425563	21427408	REMC_BreastStem.30974	0	.	21425563	21427408	0	1	1845	0
chr16	21425593	21426698	B_cells_Cheung.118914	0	.	21425593	21426698	0	1	1105	0
chr16	21427530	21429200	REMC_MyoepithelialBreast.56675	0	.	21427530	21429200	0	1	1670	0
chr16	21427650	21428405	REMC_BreastStem.30975	0	.	21427650	21428405	0	1	755	0
chr16	21428590	21429363	HeLa_polyA+_Chen.21697	0	.	21428590	21429363	0	1	773	0
chr16	21428594	21429681	REMC_BreastStem.30976	0	.	21428594	21429681	0	1	1087	0
chr16	21428613	21429151	K562.26995	0	.	21428613	21429151	0	1	538	0
chr16	21429414	21432033	REMC_MyoepithelialBreast.56676	0	.	21429414	21432033	0	1	2619	0
chr16	21429816	21431012	REMC_BreastStem.30977	0	.	21429816	21431012	0	1	1196	0
chr16	21430519	21430995	HeLa_polyA+_Chen.21699	0	.	21430519	21430995	0	1	476	0
chr16	21431133	21431634	REMC_BreastStem.30978	0	.	21431133	21431634	0	1	501	0
chr16	21431152	21431472	K562.26996	0	.	21431152	21431472	0	1	320	0
chr16	21432156	21433787	REMC_LuminalBreast.60995	0	.	21432156	21433787	0	1	1631	0
chr16	21432178	21432577	REMC_MyoepithelialBreast.56677	0	.	21432178	21432577	0	1	399	0
chr16	21432199	21432556	B_cells_Cheung.118926	0	.	21432199	21432556	0	1	357	0
chr16	21432854	21433377	REMC_MyoepithelialBreast.56678	0	.	21432854	21433377	0	1	523	0
chr16	21432934	21433727	REMC_BreastStem.30980	0	.	21432934	21433727	0	1	793	0
chr16	21432941	21433376	HeLa_polyA+_Chen.21703	0	.	21432941	21433376	0	1	435	0
chr16	21435596	21436487	REMC_LuminalBreast.60997	0	.	21435596	21436487	0	1	891	0
chr16	21442173	21443626	REMC_LuminalBreast.60999	0	.	21442173	21443626	0	1	1453	0
chr16	21739018	21739346	H1_polyA+.69970	0	.	21739018	21739346	0	1	328	0
chr16	21739049	21739506	REMC_BreastStem.30991	0	.	21739049	21739506	0	1	457	0
chr16	21779377	21781828	HIT000047499	0	+	21779377	21781828	0	1	2451	0
chr16	22007071	22009237	REMC_MyoepithelialBreast.56871	0	.	22007071	22009237	0	1	2166	0
chr16	22007306	22008414	B_cells_Cheung.119152	0	.	22007306	22008414	0	1	1108	0
chr16	22007478	22009580	REMC_BreastStem.31011	0	.	22007478	22009580	0	1	2102	0
chr16	22007551	22009124	B_Cells_Pritchard.2030185	0	.	22007551	22009124	0	1	1573	0
chr16	22111439	22113034	HepG2_Caltech_ENCODE.22153	0	.	22111439	22113034	0	1	1595	0
chr16	22112173	22113376	REMC_LuminalBreast.61045	0	.	22112173	22113376	0	1	1203	0
chr16	22112182	22113222	REMC_MyoepithelialBreast.56723	0	.	22112182	22113222	0	1	1040	0
chr16	22254905	22260843	REMC_BreastStem.31155	0	.	22254905	22260843	0	1	5938	0
chr16	22257693	22258438	H1_polyA+.70035	0	.	22257693	22258438	0	1	745	0
chr16	22260494	22263755	H1_polyA+.70037	0	.	22260494	22263755	0	1	3261	0
chr16	22260860	22262896	melanoma_Garraway_short_term_cultures.41286	0	.	22260860	22262896	0	1	2036	0
chr16	22260938	22263148	REMC_BreastStem.31156	0	.	22260938	22263148	0	1	2210	0
chr16	22712531	22712901	A549_Myers.49174	0	.	22712531	22712901	0	1	370	0
chr16	22726392	22732884	H1_polyA+.70064	0	-	22726392	22732884	0	3	3067,1102,1076	0,3729,5416
chr16	22838878	22842580	H1_polyA+.70082	0	.	22838878	22842580	0	1	3702	0
chr16	22842938	22843960	REMC_MyoepithelialBreast.56790	0	.	22842938	22843960	0	1	1022	0
chr16	22890027	22891170	REMC_MyoepithelialBreast.56797	0	.	22890027	22891170	0	1	1143	0
chr16	22908636	22911229	REMC_MyoepithelialBreast.56798	0	.	22908636	22911229	0	1	2593	0
chr16	22916006	22917571	REMC_MyoepithelialBreast.56801	0	.	22916006	22917571	0	1	1565	0
chr16	22917674	22919533	REMC_MyoepithelialBreast.56802	0	.	22917674	22919533	0	1	1859	0
chr16	22926678	22928643	REMC_MyoepithelialBreast.56806	0	.	22926678	22928643	0	1	1965	0
chr16	22928708	22931024	REMC_MyoepithelialBreast.56807	0	.	22928708	22931024	0	1	2316	0
chr16	22929743	22931191	H1_polyA+.70083	0	.	22929743	22931191	0	1	1448	0
chr16	22931628	22932798	REMC_MyoepithelialBreast.56808	0	.	22931628	22932798	0	1	1170	0
chr16	22933013	22942388	REMC_MyoepithelialBreast.56809	0	.	22933013	22942388	0	1	9375	0
chr16	22939183	22943012	Rinn_00024350	0	+	22939183	22943012	0	2	258,1229	0,2600
chr16	22966709	22967922	REMC_LuminalBreast.61119	0	.	22966709	22967922	0	1	1213	0
chr16	22968215	22968954	REMC_LuminalBreast.61121	0	.	22968215	22968954	0	1	739	0
chr16	22971020	22979228	pHIT000026632	0	-	22971020	22979228	0	3	119,173,61	0,7258,8147
chr16	22972314	22973706	REMC_LuminalBreast.61122	0	.	22972314	22973706	0	1	1392	0
chr16	23138718	23139618	REMC_MyoepithelialBreast.56817	0	.	23138718	23139618	0	1	900	0
chr16	23376067	23376650	B_cells_Cheung.119295	0	.	23376067	23376650	0	1	583	0
chr16	23664217	23666621	HepG2_Caltech_ENCODE.21997	0	.	23664217	23666621	0	1	2404	0
chr16	23666756	23667841	HepG2_Caltech_ENCODE.21998	0	.	23666756	23667841	0	1	1085	0
chr16	23669797	23670546	HepG2_Caltech_ENCODE.21999	0	.	23669797	23670546	0	1	749	0
chr16	24327920	24328421	A549_Myers.49276	0	.	24327920	24328421	0	1	501	0
chr16	24529890	24532255	H1_polyA+.70187	0	.	24529890	24532255	0	1	2365	0
chr16	24537776	24539631	H1_polyA+.70191	0	.	24537776	24539631	0	1	1855	0
chr16	24539886	24541985	H1_polyA+.70192	0	.	24539886	24541985	0	1	2099	0
chr16	24542292	24544147	H1_polyA+.70193	0	.	24542292	24544147	0	1	1855	0
chr16	24542677	24543279	melanoma_Garraway_short_term_cultures.41413	0	.	24542677	24543279	0	1	602	0
chr16	24547249	24550439	H1_polyA+.70195	0	.	24547249	24550439	0	1	3190	0
chr16	24559681	24566469	H1_polyA+.70186	0	.	24559681	24566469	0	1	6788	0
chr16	24560670	24561359	brain_AmbionMAQC.26288	0	.	24560670	24561359	0	1	689	0
chr16	24560878	24561384	B_cells_Cheung.119373	0	.	24560878	24561384	0	1	506	0
chr16	24567359	24568826	H1_polyA+.70199	0	.	24567359	24568826	0	1	1467	0
chr16	24567360	24567808	melanoma_Garraway_short_term_cultures.41419	0	.	24567360	24567808	0	1	448	0
chr16	24569525	24570104	melanoma_Garraway_short_term_cultures.41420	0	.	24569525	24570104	0	1	579	0
chr16	24580243	24589884	HIT000047064	0	-	24580243	24589884	0	3	2583,188,136	0,3416,9505
chr16	24580243	24589884	ENST00000414816	0	-	24580243	24589884	0	3	2583,188,136	0,3416,9505
chr16	24580421	24582902	H1_polyA+.70207	0	.	24580421	24582902	0	1	2481	0
chr16	24581286	24582359	HIT000390842	0	-	24581286	24582359	0	1	1073	0
chr16	24581559	24582166	melanoma_Garraway_short_term_cultures.41424	0	.	24581559	24582166	0	1	607	0
chr16	24581611	24582221	XR_041135	0	-	24581611	24582221	0	1	610	0
chr16	24587077	24588757	H1_polyA+.70210	0	.	24587077	24588757	0	1	1680	0
chr16	24591998	24594273	H1_polyA+.70213	0	.	24591998	24594273	0	1	2275	0
chr16	24600298	24606757	H1_polyA+.70218	0	.	24600298	24606757	0	1	6459	0
chr16	24606954	24608808	H1_polyA+.70219	0	.	24606954	24608808	0	1	1854	0
chr16	24611503	24613231	H1_polyA+.70222	0	.	24611503	24613231	0	1	1728	0
chr16	24612755	24613197	melanoma_Garraway_short_term_cultures.41432	0	.	24612755	24613197	0	1	442	0
chr16	24612822	24613231	brain_AmbionMAQC.26290	0	.	24612822	24613231	0	1	409	0
chr16	24615623	24617573	H1_polyA+.70225	0	.	24615623	24617573	0	1	1950	0
chr16	24639846	24641228	H1_polyA+.70243	0	.	24639846	24641228	0	1	1382	0
chr16	24640091	24640647	brain_AmbionMAQC.26294	0	.	24640091	24640647	0	1	556	0
chr16	24747370	24747867	CD4_Plagnol_resting.37610	0	.	24747370	24747867	0	1	497	0
chr16	24751641	24753235	B_Cells_Pritchard.2036311	0	.	24751641	24753235	0	1	1594	0
chr16	24752496	24753838	CD4_Plagnol_resting.37509	0	.	24752496	24753838	0	1	1342	0
chr16	24752501	24753965	B_cells_Cheung.119409	0	.	24752501	24753965	0	1	1464	0
chr16	24757556	24758432	A549_Myers.49302	0	.	24757556	24758432	0	1	876	0
chr16	24762477	24763416	H1_polyA+.70265	0	.	24762477	24763416	0	1	939	0
chr16	24763019	24763841	A549_Myers.49303	0	.	24763019	24763841	0	1	822	0
chr16	24833705	24834182	CD4_Plagnol_activated.38482	0	.	24833705	24834182	0	1	477	0
chr16	24833877	24834331	REMC_BreastStem.31141	0	.	24833877	24834331	0	1	454	0
chr16	24833897	24834228	A549_Myers.49316	0	.	24833897	24834228	0	1	331	0
chr16	24834097	24835265	melanoma_Garraway_short_term_cultures.41446	0	.	24834097	24835265	0	1	1168	0
chr16	24834302	24834892	prostate_normal.35076	0	.	24834302	24834892	0	1	590	0
chr16	24834314	24835271	CD4_Plagnol_resting.37558	0	.	24834314	24835271	0	1	957	0
chr16	24834396	24834777	breast_Burge.23640	0	.	24834396	24834777	0	1	381	0
chr16	24835740	24836526	brain_AmbionMAQC.26311	0	.	24835740	24836526	0	1	786	0
chr16	24835822	24836461	CD4_Plagnol_resting.37559	0	.	24835822	24836461	0	1	639	0
chr16	24835914	24836435	CD4_Plagnol_activated.38484	0	.	24835914	24836435	0	1	521	0
chr16	24835966	24836343	ZR751_Thompson.14536	0	.	24835966	24836343	0	1	377	0
chr16	24935338	24939733	HIT000096638	0	+	24935338	24939733	0	1	4395	0
chr16	24936360	24938701	B_cells_Cheung.119432	0	.	24936360	24938701	0	1	2341	0
chr16	24938784	24939454	B_cells_Cheung.119433	0	.	24938784	24939454	0	1	670	0
chr16	25100110	25101519	REMC_LuminalBreast.61267	0	.	25100110	25101519	0	1	1409	0
chr16	25100449	25101369	B_cells_Cheung.119497	0	.	25100449	25101369	0	1	920	0
chr16	25100512	25101291	REMC_MyoepithelialBreast.56947	0	.	25100512	25101291	0	1	779	0
chr16	25105164	25106816	REMC_LuminalBreast.61269	0	.	25105164	25106816	0	1	1652	0
chr16	25107243	25109553	REMC_LuminalBreast.61270	0	.	25107243	25109553	0	1	2310	0
chr16	25107986	25108999	REMC_MyoepithelialBreast.56949	0	.	25107986	25108999	0	1	1013	0
chr16	25109553	25110508	REMC_LuminalBreast.61271	0	.	25109553	25110508	0	1	955	0
chr16	25151797	25153245	REMC_BreastStem.31149	0	.	25151797	25153245	0	1	1448	0
chr16	25181082	25183740	B_cells_Cheung.119506	0	.	25181082	25183740	0	1	2658	0
chr16	25181194	25182513	H1_polyA+.70356	0	.	25181194	25182513	0	1	1319	0
chr16	25181217	25182487	prostate_carcinoma.59812	0	.	25181217	25182487	0	1	1270	0
chr16	25181390	25182556	MIP101.41227	0	.	25181390	25182556	0	1	1166	0
chr16	25181391	25182546	HepG2_Caltech_ENCODE.22073	0	.	25181391	25182546	0	1	1155	0
chr16	25181419	25182309	melanoma_Garraway_short_term_cultures.41472	0	.	25181419	25182309	0	1	890	0
chr16	25182565	25187719	H1_polyA+.70357	0	.	25182565	25187719	0	1	5154	0
chr16	25184139	25187725	B_cells_Cheung.119508	0	.	25184139	25187725	0	1	3586	0
chr16	25184221	25189989	REMC_MyoepithelialBreast.56962	0	.	25184221	25189989	0	1	5768	0
chr16	25186531	25190498	REMC_BreastStem.31167	0	.	25186531	25190498	0	1	3967	0
chr16	25187781	25190804	B_cells_Cheung.119509	0	.	25187781	25190804	0	1	3023	0
chr16	25187895	25190808	H1_polyA+.70358	0	.	25187895	25190808	0	1	2913	0
chr16	25187912	25189503	HepG2_Caltech_ENCODE.22077	0	.	25187912	25189503	0	1	1591	0
chr16	25187951	25188699	CD4_Plagnol_activated.38512	0	.	25187951	25188699	0	1	748	0
chr16	25187967	25188504	MIP101.41231	0	.	25187967	25188504	0	1	537	0
chr16	25187968	25188461	CD4_Plagnol_resting.37579	0	.	25187968	25188461	0	1	493	0
chr16	25187988	25189059	K562.27165	0	.	25187988	25189059	0	1	1071	0
chr16	25187994	25189349	melanoma_Garraway_short_term_cultures.41476	0	.	25187994	25189349	0	1	1355	0
chr16	25188052	25188640	H9_polyA+.27018	0	.	25188052	25188640	0	1	588	0
chr16	25195016	25204405	REMC_LuminalBreast.61292	0	.	25195016	25204405	0	1	9389	0
chr16	25195350	25198964	H1_polyA+.70362	0	.	25195350	25198964	0	1	3614	0
chr16	25200327	25204376	REMC_MyoepithelialBreast.56968	0	.	25200327	25204376	0	1	4049	0
chr16	25201281	25202116	B_cells_Cheung.119517	0	.	25201281	25202116	0	1	835	0
chr16	25201394	25203550	REMC_BreastStem.31173	0	.	25201394	25203550	0	1	2156	0
chr16	25201840	25204918	H1_polyA+.70364	0	.	25201840	25204918	0	1	3078	0
chr16	25209093	25210740	H1_polyA+.70369	0	.	25209093	25210740	0	1	1647	0
chr16	25209534	25210902	REMC_LuminalBreast.61299	0	.	25209534	25210902	0	1	1368	0
chr16	25228793	25229967	H1_polyA+.70376	0	.	25228793	25229967	0	1	1174	0
chr16	25229329	25230178	REMC_LuminalBreast.61305	0	.	25229329	25230178	0	1	849	0
chr16	25259218	25260400	H1_polyA+.70383	0	.	25259218	25260400	0	1	1182	0
chr16	25264255	25270720	H1_polyA+.70386	0	.	25264255	25270720	0	1	6465	0
chr16	25269454	25270573	melanoma_Garraway_short_term_cultures.41478	0	.	25269454	25270573	0	1	1119	0
chr16	25407437	25408172	B_Cells_Pritchard.2038207	0	.	25407437	25408172	0	1	735	0
chr16	26215271	26221027	pHIT000115423	0	+	26215271	26221027	0	2	165,176	0,5580
chr16	26478175	26533378	pHIT000089875	0	-	26478175	26533378	0	4	161,50,44,75	0,50279,53310,55128
chr16	26478175	26533378	pHIT000026668	0	-	26478175	26533378	0	6	161,90,57,50,44,75	0,18852,46488,50279,53310,55128
chr16	26511653	26518177	H1_polyA+.70493	0	-	26511653	26518177	0	3	2101,378,239	0,5241,6285
chr16	26516822	26518177	H1_polyA+.70492	0	.	26516822	26518177	0	1	1355	0
chr16	26517435	26518085	H9_polyA+.27030	0	.	26517435	26518085	0	1	650	0
chr16	26542927	26543429	B_Cells_Pritchard.2040933	0	.	26542927	26543429	0	1	502	0
chr16	26688976	26689386	ZR751_Thompson.14549	0	.	26688976	26689386	0	1	410	0
chr16	26695995	26696935	prostate_carcinoma.59853	0	.	26695995	26696935	0	1	940	0
chr16	27029477	27029805	A549_Myers.49354	0	.	27029477	27029805	0	1	328	0
chr16	27052010	27053142	melanoma_Garraway_short_term_cultures.41482	0	.	27052010	27053142	0	1	1132	0
chr16	27052060	27053188	H1_polyA+.70498	0	.	27052060	27053188	0	1	1128	0
chr16	27052060	27053188	H1_polyA+.70500	0	-	27052060	27053188	0	2	394,183	0,945
chr16	27052224	27052661	MeWo_Garraway.21519	0	.	27052224	27052661	0	1	437	0
chr16	27052304	27054001	pHIT000115427	0	-	27052304	27054001	0	4	338,226,89,400	0,412,1179,1297
chr16	27052555	27053140	H9_polyA+.27032	0	.	27052555	27053140	0	1	585	0
chr16	27052658	27053144	B_cells_Cheung.119546	0	.	27052658	27053144	0	1	486	0
chr16	27052749	27053896	H9_polyA+.27031	0	+	27052749	27053896	0	2	217,234	0,913
chr16	27053434	27054020	H1_polyA+.70499	0	.	27053434	27054020	0	1	586	0
chr16	27053457	27053906	MeWo_Garraway.21520	0	.	27053457	27053906	0	1	449	0
chr16	27053485	27053911	melanoma_Garraway_short_term_cultures.41483	0	.	27053485	27053911	0	1	426	0
chr16	27053527	27053907	B_cells_Cheung.119547	0	.	27053527	27053907	0	1	380	0
chr16	27073818	27074129	A549_Myers.49359	0	.	27073818	27074129	0	1	311	0
chr16	27077617	27078614	prostate_carcinoma.59854	0	.	27077617	27078614	0	1	997	0
chr16	27077650	27078269	prostate_normal.35137	0	.	27077650	27078269	0	1	619	0
chr16	27103277	27103640	prostate_carcinoma.59860	0	.	27103277	27103640	0	1	363	0
chr16	27108176	27108830	A549_Myers.49361	0	.	27108176	27108830	0	1	654	0
chr16	27187686	27203732	H1_polyA+.70502	0	+	27187686	27203732	0	2	348,209	0,15837
chr16	27187689	27190381	Rinn_00024247	0	+	27187689	27190381	0	2	289,1890	0,802
chr16	27202031	27206181	B_cells_Cheung.119575	0	.	27202031	27206181	0	1	4150	0
chr16	27202031	27209729	B_cells_Cheung.119574	0	+	27202031	27209729	0	2	3161,659	0,7039
chr16	27202624	27203163	B_Cells_Pritchard.2042587	0	-	27202624	27203163	0	1	539	0
chr16	27203115	27204431	CD4_Plagnol_activated.38535	0	.	27203115	27204431	0	1	1316	0
chr16	27204518	27205778	B_Cells_Pritchard.2042589	0	.	27204518	27205778	0	1	1260	0
chr16	27204542	27205577	prostate_normal.35145	0	.	27204542	27205577	0	1	1035	0
chr16	27204551	27205554	MIP101.41268	0	.	27204551	27205554	0	1	1003	0
chr16	27204552	27205808	CD4_Plagnol_activated.38536	0	.	27204552	27205808	0	1	1256	0
chr16	27204641	27205856	H1_polyA+.70504	0	.	27204641	27205856	0	1	1215	0
chr16	27204643	27209376	prostate_carcinoma.59878	0	+	27204643	27209376	0	2	923,310	0,4423
chr16	27204650	27209340	Rinn_00024822	0	+	27204650	27209340	0	2	916,275	0,4415
chr16	27204656	27205686	MCF7_Burge_Thompson.18357	0	.	27204656	27205686	0	1	1030	0
chr16	27204677	27205203	liver_polyA+.82705	0	.	27204677	27205203	0	1	526	0
chr16	27207220	27208193	CD4_Plagnol_activated.38538	0	.	27207220	27208193	0	1	973	0
chr16	27207285	27208218	B_Cells_Pritchard.2042597	0	.	27207285	27208218	0	1	933	0
chr16	27207369	27208336	HepG2_Caltech_ENCODE.22090	0	.	27207369	27208336	0	1	967	0
chr16	27207616	27208419	B_cells_Cheung.119578	0	.	27207616	27208419	0	1	803	0
chr16	27209875	27210719	prostate_carcinoma.59888	0	.	27209875	27210719	0	1	844	0
chr16	27210349	27210926	B_Cells_Pritchard.2042609	0	.	27210349	27210926	0	1	577	0
chr16	27217869	27218409	prostate_carcinoma.59867	0	.	27217869	27218409	0	1	540	0
chr16	27285180	27287370	B_Cells_Pritchard.2042931	0	+	27285180	27287370	0	1	2190	0
chr16	27285856	27287486	B_cells_Cheung.119591	0	.	27285856	27287486	0	1	1630	0
chr16	27286346	27287557	CD4_Plagnol_resting.37774	0	.	27286346	27287557	0	1	1211	0
chr16	27287632	27289149	B_cells_Cheung.119592	0	.	27287632	27289149	0	1	1517	0
chr16	27288123	27289437	CD4_Plagnol_activated.38725	0	.	27288123	27289437	0	1	1314	0
chr16	27288312	27289302	B_Cells_Pritchard.2042939	0	+	27288312	27289302	0	1	990	0
chr16	27290526	27290891	B_cells_Cheung.119594	0	.	27290526	27290891	0	1	365	0
chr16	27291220	27291798	B_Cells_Pritchard.2042949	0	+	27291220	27291798	0	1	578	0
chr16	27291262	27291809	B_cells_Cheung.119595	0	.	27291262	27291809	0	1	547	0
chr16	27291918	27292460	B_cells_Cheung.119596	0	.	27291918	27292460	0	1	542	0
chr16	27297585	27298695	B_Cells_Pritchard.2042755	0	.	27297585	27298695	0	1	1110	0
chr16	27297708	27298240	B_cells_Cheung.119599	0	.	27297708	27298240	0	1	532	0
chr16	27304538	27305429	REMC_MyoepithelialBreast.57015	0	.	27304538	27305429	0	1	891	0
chr16	27304690	27305579	B_cells_Cheung.119604	0	.	27304690	27305579	0	1	889	0
chr16	27307595	27308010	B_cells_Cheung.119608	0	.	27307595	27308010	0	1	415	0
chr16	27309927	27311070	B_cells_Cheung.119612	0	.	27309927	27311070	0	1	1143	0
chr16	27313375	27315112	REMC_MyoepithelialBreast.57017	0	.	27313375	27315112	0	1	1737	0
chr16	27317546	27318709	REMC_MyoepithelialBreast.57018	0	.	27317546	27318709	0	1	1163	0
chr16	27373253	27373956	B_cells_Cheung.119858	0	.	27373253	27373956	0	1	703	0
chr16	27375595	27376618	CD4_Plagnol_activated.38830	0	.	27375595	27376618	0	1	1023	0
chr16	27375600	27376642	B_Cells_Pritchard.2047855	0	+	27375600	27376642	0	1	1042	0
chr16	27375605	27376640	prostate_carcinoma.60003	0	.	27375605	27376640	0	1	1035	0
chr16	27375742	27376679	brain_AmbionMAQC.26365	0	.	27375742	27376679	0	1	937	0
chr16	27377457	27378389	REMC_LuminalBreast.61411	0	.	27377457	27378389	0	1	932	0
chr16	27377749	27378356	brain_AmbionMAQC.26366	0	.	27377749	27378356	0	1	607	0
chr16	27701918	27702240	A549_Myers.49431	0	.	27701918	27702240	0	1	322	0
chr16	27702992	27704715	REMC_MyoepithelialBreast.57030	0	.	27702992	27704715	0	1	1723	0
chr16	27993342	28008877	prostate_carcinoma.59909	0	-	27993342	28008877	0	6	123,60,333,95,39,595	0,14218,14362,14700,14879,14940
chr16	27993821	27994679	REMC_MyoepithelialBreast.57035	0	.	27993821	27994679	0	1	858	0
chr16	28000142	28000778	B_cells_Cheung.119729	0	.	28000142	28000778	0	1	636	0
chr16	28002383	28003057	B_cells_Cheung.119731	0	.	28002383	28003057	0	1	674	0
chr16	28004862	28005706	REMC_MyoepithelialBreast.57038	0	.	28004862	28005706	0	1	844	0
chr16	28005987	28007689	REMC_MyoepithelialBreast.57039	0	.	28005987	28007689	0	1	1702	0
chr16	28006013	28007232	MIP101.41320	0	.	28006013	28007232	0	1	1219	0
chr16	28006158	28006889	CD4_Plagnol_resting.37631	0	.	28006158	28006889	0	1	731	0
chr16	28007519	28007915	MIP101.41321	0	.	28007519	28007915	0	1	396	0
chr16	28007546	28009535	CD4_Plagnol_activated.38626	0	.	28007546	28009535	0	1	1989	0
chr16	28007674	28008037	melanoma_Garraway_short_term_cultures.41515	0	.	28007674	28008037	0	1	363	0
chr16	28007802	28008863	CD4_Plagnol_resting.37632	0	.	28007802	28008863	0	1	1061	0
chr16	28007869	28008803	MCF7_Burge_Thompson.18374	0	.	28007869	28008803	0	1	934	0
chr16	28007984	28009896	B_cells_Cheung.119734	0	.	28007984	28009896	0	1	1912	0
chr16	28007990	28008792	BT474_Burge_Thompson.19849	0	.	28007990	28008792	0	1	802	0
chr16	28008063	28008538	H1_polyA+.70529	0	.	28008063	28008538	0	1	475	0
chr16	28008334	28008684	prostate_normal.35184	0	.	28008334	28008684	0	1	350	0
chr16	28008651	28011184	B_Cells_Pritchard.2045657	0	-	28008651	28011184	0	1	2533	0
chr16	28008910	28011263	REMC_LuminalBreast.61432	0	.	28008910	28011263	0	1	2353	0
chr16	28009298	28010342	REMC_MyoepithelialBreast.57040	0	.	28009298	28010342	0	1	1044	0
chr16	28009993	28010865	B_cells_Cheung.119735	0	.	28009993	28010865	0	1	872	0
chr16	28010306	28011076	H1_polyA+.70530	0	.	28010306	28011076	0	1	770	0
chr16	28010396	28011236	REMC_MyoepithelialBreast.57041	0	.	28010396	28011236	0	1	840	0
chr16	28011546	28013259	REMC_MyoepithelialBreast.57042	0	.	28011546	28013259	0	1	1713	0
chr16	28011609	28013266	B_cells_Cheung.119737	0	.	28011609	28013266	0	1	1657	0
chr16	28011645	28013251	B_Cells_Pritchard.2045685	0	+	28011645	28013251	0	1	1606	0
chr16	28011930	28013134	REMC_BreastStem.31192	0	.	28011930	28013134	0	1	1204	0
chr16	28011939	28013284	REMC_LuminalBreast.61433	0	.	28011939	28013284	0	1	1345	0
chr16	28012328	28013155	H1_polyA+.70531	0	.	28012328	28013155	0	1	827	0
chr16	28177483	28178253	A549_Myers.49461	0	.	28177483	28178253	0	1	770	0
chr16	28177534	28177971	skeletal_muscle_Burge.17539	0	.	28177534	28177971	0	1	437	0
chr16	28187293	28208141	B_Cells_Pritchard.2044851	0	-	28187293	28208141	0	2	45,1291	0,19557
chr16	28201959	28211104	H1_polyA+.70602	0	-	28201959	28211104	0	2	3595,516	0,8629
chr16	28202080	28208330	H9_polyA+.27060	0	+	28202080	28208330	0	2	1916,1608	0,4642
chr16	28202080	28204086	H9_polyA+.27061	0	.	28202080	28204086	0	1	2006	0
chr16	28202281	28203727	BT20_Thompson.12826	0	.	28202281	28203727	0	1	1446	0
chr16	28202516	28202939	B_cells_Cheung.119770	0	.	28202516	28202939	0	1	423	0
chr16	28202553	28203880	MIP101.41346	0	.	28202553	28203880	0	1	1327	0
chr16	28203033	28203477	B_cells_Cheung.119771	0	.	28203033	28203477	0	1	444	0
chr16	28203705	28210886	Rinn_00024265	0	-	28203705	28210886	0	2	2184,299	0,6882
chr16	28203706	28210886	ENST00000501520	0	-	28203706	28210886	0	2	2183,298	0,6882
chr16	28204273	28205248	HeLa_polyA+_Chen.21851	0	.	28204273	28205248	0	1	975	0
chr16	28204314	28205158	H9_polyA+.27062	0	.	28204314	28205158	0	1	844	0
chr16	28204316	28205247	B_cells_Cheung.119773	0	.	28204316	28205247	0	1	931	0
chr16	28204342	28205132	MCF7_Burge_Thompson.18376	0	.	28204342	28205132	0	1	790	0
chr16	28204363	28205244	BT20_Thompson.12827	0	.	28204363	28205244	0	1	881	0
chr16	28204365	28205170	melanoma_Garraway_short_term_cultures.41534	0	.	28204365	28205170	0	1	805	0
chr16	28204366	28205900	BT474_Burge_Thompson.19877	0	.	28204366	28205900	0	1	1534	0
chr16	28204382	28205175	prostate_carcinoma.59936	0	.	28204382	28205175	0	1	793	0
chr16	28204383	28205232	B_Cells_Pritchard.2044911	0	+	28204383	28205232	0	1	849	0
chr16	28204384	28205239	MIP101.41347	0	.	28204384	28205239	0	1	855	0
chr16	28204456	28205087	NEC_from_H9.45027	0	.	28204456	28205087	0	1	631	0
chr16	28204458	28205247	T47D_Burge_Thompson.17218	0	.	28204458	28205247	0	1	789	0
chr16	28206286	28208449	H1_polyA+.70601	0	.	28206286	28208449	0	1	2163	0
chr16	28206312	28208152	BT474_Burge_Thompson.19878	0	.	28206312	28208152	0	1	1840	0
chr16	28206757	28208308	MIP101.41349	0	.	28206757	28208308	0	1	1551	0
chr16	28206883	28208426	B_cells_Cheung.119776	0	.	28206883	28208426	0	1	1543	0
chr16	28207157	28208045	HeLa_polyA+_Chen.21849	0	.	28207157	28208045	0	1	888	0
chr16	28207180	28208049	MCF7_Burge_Thompson.18377	0	.	28207180	28208049	0	1	869	0
chr16	28207345	28207688	H1_rRNA-depleted_UCSD_REMC.53708	0	.	28207345	28207688	0	1	343	0
chr16	28209322	28209675	HeLa_polyA+_Chen.21853	0	.	28209322	28209675	0	1	353	0
chr16	28209374	28209991	BT474_Burge_Thompson.19879	0	.	28209374	28209991	0	1	617	0
chr16	28209435	28210013	MIP101.41351	0	.	28209435	28210013	0	1	578	0
chr16	28431564	28440068	B_Cells_Pritchard.2045227	0	+	28431564	28440068	0	2	2075,37	0,8467
chr16	28445305	28446223	REMC_LuminalBreast.61522	0	.	28445305	28446223	0	1	918	0
chr16	28450423	28452275	melanoma_Garraway_short_term_cultures.41540	0	.	28450423	28452275	0	1	1852	0
chr16	28450463	28452675	BT474_Burge_Thompson.19875	0	.	28450463	28452675	0	1	2212	0
chr16	28450971	28452448	MCF10A_Thompson.13060	0	.	28450971	28452448	0	1	1477	0
chr16	28452933	28454842	melanoma_Garraway_short_term_cultures.41542	0	.	28452933	28454842	0	1	1909	0
chr16	28551712	28553517	HIT000269882	0	-	28551712	28553517	0	1	1805	0
chr16	28577844	28582958	XR_078520	0	-	28577844	28582958	0	3	780,152,68	0,4213,5046
chr16	28669197	28669632	pHIT000089594	0	-	28669197	28669632	0	1	435	0
chr16	28730707	28731200	B_cells_Cheung.119827	0	.	28730707	28731200	0	1	493	0
chr16	28734962	28735608	H1_polyA+.70690	0	.	28734962	28735608	0	1	646	0
chr16	28735000	28735665	K562.51107	0	.	28735000	28735665	0	1	665	0
chr16	28735711	28736476	REMC_BreastStem.31220	0	.	28735711	28736476	0	1	765	0
chr16	28737492	28739551	REMC_MyoepithelialBreast.57100	0	.	28737492	28739551	0	1	2059	0
chr16	28738422	28739088	CD4_Plagnol_activated.38598	0	.	28738422	28739088	0	1	666	0
chr16	28738456	28739089	REMC_BreastStem.31252	0	.	28738456	28739089	0	1	633	0
chr16	28738476	28739611	H1_polyA+.70693	0	.	28738476	28739611	0	1	1135	0
chr16	28738482	28739112	B_Cells_Pritchard.2049163	0	-	28738482	28739112	0	1	630	0
chr16	28738484	28739430	K562.51109	0	.	28738484	28739430	0	1	946	0
chr16	28738493	28739549	HeLa_polyA+_Chen.21881	0	.	28738493	28739549	0	1	1056	0
chr16	28738493	28738985	BT474_Burge_Thompson.20030	0	.	28738493	28738985	0	1	492	0
chr16	28738493	28739101	melanoma_Garraway_short_term_cultures.41558	0	.	28738493	28739101	0	1	608	0
chr16	28738497	28739163	CD4_Plagnol_resting.37796	0	.	28738497	28739163	0	1	666	0
chr16	28738705	28739025	MeWo_Garraway.21618	0	.	28738705	28739025	0	1	320	0
chr16	28757453	28758367	REMC_BreastStem.31237	0	.	28757453	28758367	0	1	914	0
chr16	28794611	28795120	REMC_MyoepithelialBreast.57103	0	.	28794611	28795120	0	1	509	0
chr16	28795147	28795740	MCF7_Burge_Thompson.18461	0	.	28795147	28795740	0	1	593	0
chr16	28795356	28795959	T47D_Burge_Thompson.17240	0	.	28795356	28795959	0	1	603	0
chr16	28795888	28796269	REMC_MyoepithelialBreast.57104	0	.	28795888	28796269	0	1	381	0
chr16	28864490	28865005	A549_Myers.49521	0	.	28864490	28865005	0	1	515	0
chr16	28864599	28865012	H1_polyA+.70617	0	.	28864599	28865012	0	1	413	0
chr16	28864604	28865005	BT474_Burge_Thompson.19920	0	.	28864604	28865005	0	1	401	0
chr16	28911149	28912110	CD4_Plagnol_activated.38779	0	.	28911149	28912110	0	1	961	0
chr16	28911150	28912107	CD4_Plagnol_resting.37984	0	.	28911150	28912107	0	1	957	0
chr16	28927663	28928629	B_Cells_Pritchard.2045901	0	.	28927663	28928629	0	1	966	0
chr16	28927671	28928379	BT474_Burge_Thompson.19921	0	.	28927671	28928379	0	1	708	0
chr16	28948017	28948682	B_Cells_Pritchard.2045985	0	.	28948017	28948682	0	1	665	0
chr16	29326078	29326706	REMC_BreastStem.31303	0	.	29326078	29326706	0	1	628	0
chr16	29326340	29326928	REMC_LuminalBreast.61612	0	.	29326340	29326928	0	1	588	0
chr16	29328232	29329273	REMC_LuminalBreast.61614	0	.	29328232	29329273	0	1	1041	0
chr16	29328421	29329268	REMC_BreastStem.31305	0	.	29328421	29329268	0	1	847	0
chr16	29338935	29339315	REMC_LuminalBreast.61617	0	.	29338935	29339315	0	1	380	0
chr16	29338969	29339319	B_cells_Cheung.120056	0	.	29338969	29339319	0	1	350	0
chr16	29342115	29342505	B_cells_Cheung.120060	0	.	29342115	29342505	0	1	390	0
chr16	29342133	29342698	B_Cells_Pritchard.2047057	0	+	29342133	29342698	0	1	565	0
chr16	30353515	30353888	B_Cells_Pritchard.2048799	0	.	30353515	30353888	0	1	373	0
chr16	30356053	30356988	REMC_LuminalBreast.61802	0	.	30356053	30356988	0	1	935	0
chr16	30375348	30375975	B_cells_Cheung.120363	0	.	30375348	30375975	0	1	627	0
chr16	31021035	31022534	REMC_LuminalBreast.61948	0	.	31021035	31022534	0	1	1499	0
chr16	31032791	31034756	kidney_Gilad.53634	0	+	31032791	31034756	0	3	197,489,190	0,511,1775
chr16	31114874	31115530	brain_AmbionMAQC.26799	0	.	31114874	31115530	0	1	656	0
chr16	31114892	31115516	CD4_Plagnol_activated.38974	0	.	31114892	31115516	0	1	624	0
chr16	31114961	31115509	prostate_normal.35447	0	.	31114961	31115509	0	1	548	0
chr16	31115011	31116361	prostate_carcinoma.60394	0	-	31115011	31116361	0	2	485,23	0,1327
chr16	31118148	31118462	ovary_Raymond.162209	0	.	31118148	31118462	0	1	314	0
chr16	31118629	31119250	CD4_Plagnol_activated.38976	0	.	31118629	31119250	0	1	621	0
chr16	31118633	31119256	CD4_Plagnol_resting.38032	0	.	31118633	31119256	0	1	623	0
chr16	31124625	31125135	REMC_MyoepithelialBreast.57402	0	.	31124625	31125135	0	1	510	0
chr16	31124639	31125148	REMC_BreastStem.31434	0	.	31124639	31125148	0	1	509	0
chr16	31125199	31129584	REMC_MyoepithelialBreast.57403	0	.	31125199	31129584	0	1	4385	0
chr16	31125215	31127733	REMC_BreastStem.31435	0	.	31125215	31127733	0	1	2518	0
chr16	31126912	31127278	B_Cells_Pritchard.2050257	0	.	31126912	31127278	0	1	366	0
chr16	31127845	31129624	REMC_BreastStem.31436	0	.	31127845	31129624	0	1	1779	0
chr16	31130350	31131740	REMC_MyoepithelialBreast.57405	0	.	31130350	31131740	0	1	1390	0
chr16	31147517	31148662	H1_polyA+.70972	0	.	31147517	31148662	0	1	1145	0
chr16	31147526	31148940	brain_AmbionMAQC.26743	0	.	31147526	31148940	0	1	1414	0
chr16	31147845	31149221	REMC_MyoepithelialBreast.57413	0	.	31147845	31149221	0	1	1376	0
chr16	31149554	31150641	REMC_BreastStem.31440	0	.	31149554	31150641	0	1	1087	0
chr16	31149607	31149915	brain_AmbionMAQC.26744	0	.	31149607	31149915	0	1	308	0
chr16	31150112	31150637	REMC_LuminalBreast.62011	0	.	31150112	31150637	0	1	525	0
chr16	31151870	31157153	REMC_LuminalBreast.61881	0	.	31151870	31157153	0	1	5283	0
chr16	31151948	31154390	REMC_BreastStem.31441	0	.	31151948	31154390	0	1	2442	0
chr16	31160194	31162040	REMC_LuminalBreast.61883	0	.	31160194	31162040	0	1	1846	0
chr16	31165136	31169451	REMC_LuminalBreast.61886	0	.	31165136	31169451	0	1	4315	0
chr16	31165814	31166375	REMC_BreastStem.31446	0	.	31165814	31166375	0	1	561	0
chr16	31169506	31171269	REMC_LuminalBreast.61887	0	.	31169506	31171269	0	1	1763	0
chr16	31171512	31172319	REMC_BreastStem.31449	0	.	31171512	31172319	0	1	807	0
chr16	31304314	31305604	REMC_MyoepithelialBreast.57423	0	.	31304314	31305604	0	1	1290	0
chr16	31351873	31353308	prostate_carcinoma.60493	0	.	31351873	31353308	0	1	1435	0
chr16	31351993	31353298	B_Cells_Pritchard.2050969	0	-	31351993	31353298	0	1	1305	0
chr16	31352000	31353288	prostate_normal.35444	0	.	31352000	31353288	0	1	1288	0
chr16	31352228	31353318	MIP101.41691	0	.	31352228	31353318	0	1	1090	0
chr16	31352248	31353308	B_cells_Cheung.120691	0	.	31352248	31353308	0	1	1060	0
chr16	31352250	31352911	melanoma_Garraway_short_term_cultures.41857	0	.	31352250	31352911	0	1	661	0
chr16	31352625	31353241	BT474_Burge_Thompson.20100	0	.	31352625	31353241	0	1	616	0
chr16	31352853	31353330	H1_polyA+.70981	0	.	31352853	31353330	0	1	477	0
chr16	31365707	31367862	REMC_LuminalBreast.61913	0	.	31365707	31367862	0	1	2155	0
chr16	31366419	31375213	H1_polyA+.70986	0	.	31366419	31375213	0	1	8794	0
chr16	31367996	31375232	REMC_MyoepithelialBreast.57430	0	.	31367996	31375232	0	1	7236	0
chr16	31368308	31371900	brain_AmbionMAQC.26767	0	.	31368308	31371900	0	1	3592	0
chr16	31368348	31372315	HIT000067322	0	-	31368348	31372315	0	2	247,210	0,3757
chr16	31368383	31373093	HepG2_Caltech_ENCODE.22322	0	.	31368383	31373093	0	1	4710	0
chr16	31368747	31371865	melanoma_Garraway_short_term_cultures.41861	0	.	31368747	31371865	0	1	3118	0
chr16	31369274	31371900	ZR751_Thompson.14755	0	.	31369274	31371900	0	1	2626	0
chr16	31369285	31370088	MDAMB468_Thompson.14596	0	.	31369285	31370088	0	1	803	0
chr16	31369426	31370087	K562.27433	0	.	31369426	31370087	0	1	661	0
chr16	31369432	31370035	MIP101.41695	0	.	31369432	31370035	0	1	603	0
chr16	31369457	31371906	BT474_Burge_Thompson.20098	0	.	31369457	31371906	0	1	2449	0
chr16	31369459	31371898	CD4_Plagnol_activated.38991	0	.	31369459	31371898	0	1	2439	0
chr16	31369465	31370028	MeWo_Garraway.21788	0	.	31369465	31370028	0	1	563	0
chr16	31369467	31371886	NEC_from_H9.45471	0	-	31369467	31371886	0	2	585,132	0,2287
chr16	31369470	31370007	MCF7_Burge_Thompson.18571	0	.	31369470	31370007	0	1	537	0
chr16	31369484	31370858	MCF10A_Thompson.13177	0	.	31369484	31370858	0	1	1374	0
chr16	31369489	31375190	HeLa_polyA+_Chen.22085	0	.	31369489	31375190	0	1	5701	0
chr16	31369493	31370002	kidney_Gilad.53672	0	.	31369493	31370002	0	1	509	0
chr16	31369499	31370024	CD4_Plagnol_resting.38055	0	.	31369499	31370024	0	1	525	0
chr16	31369515	31370883	BT20_Thompson.12960	0	.	31369515	31370883	0	1	1368	0
chr16	31369528	31370000	colon_Burge.22742	0	.	31369528	31370000	0	1	472	0
chr16	31369528	31370022	prostate_normal.35513	0	.	31369528	31370022	0	1	494	0
chr16	31369530	31370021	testes_Burge.31893	0	.	31369530	31370021	0	1	491	0
chr16	31369541	31370874	T47D_Burge_Thompson.17429	0	.	31369541	31370874	0	1	1333	0
chr16	31369557	31371049	H9_polyA+.27323	0	.	31369557	31371049	0	1	1492	0
chr16	31370274	31370743	adipose_Burge.23324	0	.	31370274	31370743	0	1	469	0
chr16	31370282	31370874	NEC_from_H9.45472	0	.	31370282	31370874	0	1	592	0
chr16	31370305	31370893	MCF7_Burge_Thompson.18572	0	.	31370305	31370893	0	1	588	0
chr16	31370305	31370850	HME_Burge.24293	0	.	31370305	31370850	0	1	545	0
chr16	31370308	31370736	MB435_Burge.25455	0	.	31370308	31370736	0	1	428	0
chr16	31370398	31370834	H1_rRNA-depleted_UCSD_REMC.54164	0	.	31370398	31370834	0	1	436	0
chr16	31370426	31370815	A549_Myers.49786	0	.	31370426	31370815	0	1	389	0
chr16	31370977	31373568	BT20_Thompson.12961	0	.	31370977	31373568	0	1	2591	0
chr16	31371325	31372959	kidney_Gilad.53676	0	-	31371325	31372959	0	2	446,793	0,841
chr16	31372008	31372945	CD4_Plagnol_resting.38057	0	.	31372008	31372945	0	1	937	0
chr16	31372058	31375213	brain_AmbionMAQC.26768	0	.	31372058	31375213	0	1	3155	0
chr16	31372060	31372966	H9_polyA+.27326	0	.	31372060	31372966	0	1	906	0
chr16	31372066	31372976	BT474_Burge_Thompson.20101	0	.	31372066	31372976	0	1	910	0
chr16	31372067	31373103	ZR751_Thompson.14756	0	.	31372067	31373103	0	1	1036	0
chr16	31372075	31373109	CD4_Plagnol_activated.38992	0	.	31372075	31373109	0	1	1034	0
chr16	31372076	31373570	melanoma_Garraway_short_term_cultures.41862	0	.	31372076	31373570	0	1	1494	0
chr16	31372082	31372955	T47D_Burge_Thompson.17432	0	.	31372082	31372955	0	1	873	0
chr16	31372089	31372959	MCF10A_Thompson.13179	0	.	31372089	31372959	0	1	870	0
chr16	31372102	31372946	A549_Myers.49790	0	.	31372102	31372946	0	1	844	0
chr16	31372114	31373544	K562.27435	0	.	31372114	31373544	0	1	1430	0
chr16	31372117	31372959	kidney_Gilad.53677	0	.	31372117	31372959	0	1	842	0
chr16	31372123	31373125	MDAMB468_Thompson.14598	0	.	31372123	31373125	0	1	1002	0
chr16	31372140	31372973	MeWo_Garraway.21792	0	.	31372140	31372973	0	1	833	0
chr16	31372273	31373413	REMC_BreastStem.31455	0	.	31372273	31373413	0	1	1140	0
chr16	31373533	31373934	H1_rRNA-depleted_UCSD_REMC.54166	0	.	31373533	31373934	0	1	401	0
chr16	31373712	31376845	NEC_from_H9.45479	0	-	31373712	31376845	0	2	774,277	0,2856
chr16	31374562	31374872	adipose_Burge.23321	0	.	31374562	31374872	0	1	310	0
chr16	31375314	31376340	HeLa_polyA+_Chen.22083	0	.	31375314	31376340	0	1	1026	0
chr16	31375316	31376324	CD4_Plagnol_activated.38995	0	.	31375316	31376324	0	1	1008	0
chr16	31375335	31376333	MeWo_Garraway.21790	0	.	31375335	31376333	0	1	998	0
chr16	31375336	31376312	H9_polyA+.27328	0	.	31375336	31376312	0	1	976	0
chr16	31375336	31376304	prostate_normal.35514	0	.	31375336	31376304	0	1	968	0
chr16	31375337	31376277	testes_Burge.31898	0	.	31375337	31376277	0	1	940	0
chr16	31375339	31376310	HepG2_Caltech_ENCODE.22324	0	.	31375339	31376310	0	1	971	0
chr16	31375341	31376007	kidney_Gilad.53675	0	.	31375341	31376007	0	1	666	0
chr16	31375341	31376141	MDAMB231_Thompson.13634	0	.	31375341	31376141	0	1	800	0
chr16	31375341	31376320	liver_polyA+.83262	0	.	31375341	31376320	0	1	979	0
chr16	31375350	31376264	breast_Burge.24061	0	.	31375350	31376264	0	1	914	0
chr16	31375350	31376270	NEC_from_H9.45480	0	.	31375350	31376270	0	1	920	0
chr16	31375362	31376328	MDAMB468_Thompson.14594	0	.	31375362	31376328	0	1	966	0
chr16	31375365	31376243	MB435_Burge.25446	0	.	31375365	31376243	0	1	878	0
chr16	31375468	31375817	HME_Burge.24299	0	.	31375468	31375817	0	1	349	0
chr16	31399228	31400341	REMC_MyoepithelialBreast.57436	0	.	31399228	31400341	0	1	1113	0
chr16	31399589	31400342	melanoma_Garraway_short_term_cultures.41870	0	.	31399589	31400342	0	1	753	0
chr16	31613105	31613536	B_Cells_Pritchard.2051561	0	.	31613105	31613536	0	1	431	0
chr16	31619183	31619849	A549_Myers.49800	0	.	31619183	31619849	0	1	666	0
chr16	31619314	31619798	CD4_Snyder.46884	0	.	31619314	31619798	0	1	484	0
chr16	31619981	31620929	CD4_Snyder.46885	0	.	31619981	31620929	0	1	948	0
chr16	31622549	31622891	CD4_Snyder.46889	0	.	31622549	31622891	0	1	342	0
chr16	31624479	31629366	MIP101.41709	0	-	31624479	31629366	0	2	235,4431	0,456
chr16	31624496	31628179	CD4_Snyder.46895	0	+	31624496	31628179	0	2	118,3468	0,215
chr16	31625706	31630934	melanoma_Garraway_short_term_cultures.41877	0	.	31625706	31630934	0	1	5228	0
chr16	31625711	31628748	MeWo_Garraway.21808	0	.	31625711	31628748	0	1	3037	0
chr16	31625715	31628712	MDAMB231_Thompson.13641	0	.	31625715	31628712	0	1	2997	0
chr16	31625784	31628721	HIT000261057	0	+	31625784	31628721	0	2	37,1993	0,944
chr16	31626487	31627340	lymph_node_Burge.29674	0	.	31626487	31627340	0	1	853	0
chr16	31626537	31627560	HeLa_polyA-_Chen.11910	0	.	31626537	31627560	0	1	1023	0
chr16	31626611	31628726	A549_Myers.49806	0	.	31626611	31628726	0	1	2115	0
chr16	31626725	31627038	H1_rRNA-depleted_UCSD_REMC.54190	0	.	31626725	31627038	0	1	313	0
chr16	31627019	31628075	NEC_from_H9.45496	0	.	31627019	31628075	0	1	1056	0
chr16	31627087	31627561	H9_polyA-_Chen.8761	0	.	31627087	31627561	0	1	474	0
chr16	31627372	31628052	kidney_Gilad.53690	0	.	31627372	31628052	0	1	680	0
chr16	31627647	31628237	HeLa_polyA-_Chen.11909	0	.	31627647	31628237	0	1	590	0
chr16	31627671	31628195	H1_rRNA-depleted_UCSD_REMC.54191	0	.	31627671	31628195	0	1	524	0
chr16	31629446	31629790	CD4_Snyder.46892	0	.	31629446	31629790	0	1	344	0
chr16	31629448	31630809	MeWo_Garraway.21810	0	.	31629448	31630809	0	1	1361	0
chr16	31629572	31630742	MDAMB231_Thompson.13643	0	.	31629572	31630742	0	1	1170	0
chr16	31629642	31630865	ZR751_Thompson.14766	0	.	31629642	31630865	0	1	1223	0
chr16	31629812	31630776	lymph_node_Burge.29678	0	.	31629812	31630776	0	1	964	0
chr16	31629863	31630743	CD4_Snyder.46893	0	.	31629863	31630743	0	1	880	0
chr16	31629931	31630764	kidney_Gilad.53693	0	.	31629931	31630764	0	1	833	0
chr16	31630068	31630881	A549_Myers.49808	0	.	31630068	31630881	0	1	813	0
chr16	31630083	31630745	HME_Burge.24307	0	.	31630083	31630745	0	1	662	0
chr16	31630087	31630837	NEC_from_H9.45502	0	.	31630087	31630837	0	1	750	0
chr16	31630403	31630912	H1_rRNA-depleted_UCSD_REMC.54195	0	.	31630403	31630912	0	1	509	0
chr16	31840633	31841066	prostate_normal.35468	0	.	31840633	31841066	0	1	433	0
chr16	31840685	31841074	NEC_from_H9.45523	0	.	31840685	31841074	0	1	389	0
chr16	31942721	31943863	HIT000298445	0	-	31942721	31943863	0	1	1142	0
chr16	32172756	32173526	Rinn_00024826	0	+	32172756	32173526	0	2	53,312	0,458
chr16	32183631	32206361	pHIT000115595	0	+	32183631	32206361	0	3	116,166,219	0,14140,22511
chr16	32238755	32241616	pHIT000115597	0	+	32238755	32241616	0	3	106,108,161	0,401,2700
chr16	32556496	32556890	testes_Burge.31919	0	.	32556496	32556890	0	1	394	0
chr16	32556515	32556983	B_Cells_Pritchard.2052705	0	.	32556515	32556983	0	1	468	0
chr16	32556527	32557001	melanoma_Garraway_short_term_cultures.41902	0	.	32556527	32557001	0	1	474	0
chr16	32679764	32690431	HIT000323054_03	0	+	32679764	32690431	0	5	147,192,108,188,1023	0,849,4495,7332,9644
chr16	33013772	33041166	pHIT000115599	0	-	33013772	33041166	0	18	312,197,148,182,193,188,169,134,250,211,94,151,104,174,44,173,172,110	0,416,811,1787,5576,6993,13474,15566,16566,17495,18771,20412,21556,22044,25076,25414,26615,27284
chr16	33017618	33028287	HIT000323054_04	0	-	33017618	33028287	0	5	1023,188,108,192,147	0,3147,6064,9628,10522
chr16	33201223	33201884	A549_Myers.49839	0	+	33201223	33201884	0	2	131,325	0,336
chr16	33247692	33251110	Rinn_00024372	0	+	33247692	33251110	0	2	1604,668	0,2750
chr16	33252068	33255460	HIT000048001	0	-	33252068	33255460	0	1	3392	0
chr16	33257979	33264928	Rinn_00024633	0	-	33257979	33264928	0	3	548,167,211	0,1410,6738
chr16	33417258	33417648	K562.27476	0	.	33417258	33417648	0	1	390	0
chr16	33479386	33493101	pHIT000115600	0	+	33479386	33493101	0	2	253,74	0,13641
chr16	33512711	33513184	lymph_node_Burge.29693	0	+	33512711	33513184	0	2	66,306	0,167
chr16	33748504	33748868	B_cells_Cheung.120780	0	.	33748504	33748868	0	1	364	0
chr16	33772515	33787205	A549_Myers.49840	0	+	33772515	33787205	0	7	108,194,198,33,15,39,68	0,1379,1996,2436,3363,6690,14622
chr16	33773839	33774148	BT474_Burge_Thompson.20127	0	.	33773839	33774148	0	1	309	0
chr16	33775229	33776031	BT474_Burge_Thompson.20128	0	.	33775229	33776031	0	1	802	0
chr16	33841128	33850978	XR_079308	0	-	33841128	33850978	0	15	71,41,33,883,981,528,20,5,8,69,176,509,78,194,62	0,78,121,154,1040,2026,2554,2574,2587,2626,2696,2878,9013,9585,9788
chr16	33845161	33845582	A549_Myers.49844	0	.	33845161	33845582	0	1	421	0
chr16	33845829	33846621	B_Cells_Pritchard.2053391	0	.	33845829	33846621	0	1	792	0
chr16	33846382	33846854	A549_Myers.49846	0	.	33846382	33846854	0	1	472	0
chr16	33849766	33850394	B_Cells_Pritchard.2053401	0	.	33849766	33850394	0	1	628	0
chr16	33849857	33850185	A549_Myers.49847	0	.	33849857	33850185	0	1	328	0
chr16	33851619	33852000	A549_Myers.49848	0	.	33851619	33852000	0	1	381	0
chr16	33856884	33865519	H1_polyA+.71602	0	-	33856884	33865519	0	2	214,435	0,8200
chr16	33858496	33858854	B_cells_Cheung.120789	0	.	33858496	33858854	0	1	358	0
chr16	33861745	33862148	H1_polyA+.71610	0	.	33861745	33862148	0	1	403	0
chr16	33861828	33862384	melanoma_Garraway_short_term_cultures.41912	0	.	33861828	33862384	0	1	556	0
chr16	33862678	33862997	H1_polyA+.71611	0	.	33862678	33862997	0	1	319	0
chr16	33864541	33865512	melanoma_Garraway_short_term_cultures.41915	0	.	33864541	33865512	0	1	971	0
chr16	33865216	33865532	K562.27482	0	.	33865216	33865532	0	1	316	0
chr16	33865357	33865803	BT474_Burge_Thompson.20164	0	.	33865357	33865803	0	1	446	0
chr16	33869987	33872203	B_cells_Cheung.120802	0	.	33869987	33872203	0	1	2216	0
chr16	33872343	33872759	B_cells_Cheung.120803	0	.	33872343	33872759	0	1	416	0
chr16	34176336	34196782	pHIT000115606	0	+	34176336	34196782	0	9	471,99,89,36,76,84,110,124,231	0,6037,8179,9028,10485,12250,12936,19692,20215
chr16	34235662	34236744	testes_Burge.31943	0	+	34235662	34236744	0	2	173,452	0,630
chr16	34240507	34246256	HIT000028392	0	+	34240507	34246256	0	1	5749	0
chr16	34242894	34244407	melanoma_Garraway_short_term_cultures.41927	0	.	34242894	34244407	0	1	1513	0
chr16	34244587	34245337	melanoma_Garraway_short_term_cultures.41928	0	.	34244587	34245337	0	1	750	0
chr16	34266039	34266379	A549_Myers.49883	0	.	34266039	34266379	0	1	340	0
chr16	34284392	34287346	melanoma_Garraway_short_term_cultures.41932	0	.	34284392	34287346	0	1	2954	0
chr16	34284561	34287533	HIT000048039	0	+	34284561	34287533	0	1	2972	0
chr16	34286578	34300586	pHIT000115608	0	+	34286578	34300586	0	6	377,99,188,120,227,105	0,1238,1517,8651,13088,13903
chr16	34287650	34289428	HIT000098574	0	+	34287650	34289428	0	1	1778	0
chr16	34287658	34289434	HIT000091851	0	+	34287658	34289434	0	1	1776	0
chr16	34306624	34324873	pHIT000115609	0	-	34306624	34324873	0	3	183,115,353	0,286,17896
chr16	34313521	34314310	melanoma_Garraway_short_term_cultures.41934	0	.	34313521	34314310	0	1	789	0
chr16	34325751	34326543	melanoma_Garraway_short_term_cultures.41937	0	.	34325751	34326543	0	1	792	0
chr16	34552540	34552994	melanoma_Garraway_short_term_cultures.41957	0	.	34552540	34552994	0	1	454	0
chr16	34578243	34578554	MB435_Burge.25513	0	.	34578243	34578554	0	1	311	0
chr16	34584056	34584373	MB435_Burge.25517	0	.	34584056	34584373	0	1	317	0
chr16	34596965	34598318	testes_Burge.31947	0	-	34596965	34598318	0	3	321,448,121	0,668,1232
chr16	34608745	34616187	MeWo_Garraway.21867	0	+	34608745	34616187	0	2	271,2197	0,5245
chr16	34608755	34616257	melanoma_Garraway_short_term_cultures.41968	0	+	34608755	34616257	0	2	261,2267	0,5235
chr16	34608757	34609130	MeI_Garraway.10842	0	.	34608757	34609130	0	1	373	0
chr16	34608761	34612520	MCF7_Burge_Thompson.18617	0	.	34608761	34612520	0	1	3759	0
chr16	34612724	34613375	MeI_Garraway.10843	0	.	34612724	34613375	0	1	651	0
chr16	34612845	34616261	MCF7_Burge_Thompson.18618	0	.	34612845	34616261	0	1	3416	0
chr16	34613300	34616553	melanoma_Garraway_short_term_cultures.41969	0	.	34613300	34616553	0	1	3253	0
chr16	34613663	34616431	MeI_Garraway.10844	0	.	34613663	34616431	0	1	2768	0
chr16	34617425	34618217	MCF7_Burge_Thompson.18619	0	.	34617425	34618217	0	1	792	0
chr16	34617722	34618255	T47D_Burge_Thompson.17454	0	.	34617722	34618255	0	1	533	0
chr16	34666762	34667126	A549_Myers.49885	0	.	34666762	34667126	0	1	364	0
chr16	34668025	34668773	BT474_Burge_Thompson.20136	0	.	34668025	34668773	0	1	748	0
chr16	34690512	34692025	B_cells_Cheung.120821	0	.	34690512	34692025	0	1	1513	0
chr16	34690692	34691739	B_Cells_Pritchard.2054585	0	.	34690692	34691739	0	1	1047	0
chr16	34728328	34732435	B_cells_Cheung.120836	0	.	34728328	34732435	0	1	4107	0
chr16	34729068	34731683	pHIT000115613	0	-	34729068	34731683	0	3	80,202,39	0,2237,2576
chr16	34729507	34732351	MCF10A_Thompson.13230	0	.	34729507	34732351	0	1	2844	0
chr16	34730080	34730968	prostate_carcinoma.60456	0	.	34730080	34730968	0	1	888	0
chr16	34734515	34735005	B_cells_Cheung.120837	0	.	34734515	34735005	0	1	490	0
chr16	34734551	34736197	pHIT000115614	0	-	34734551	34736197	0	3	315,105,204	0,635,1442
chr16	34735899	34737107	B_cells_Cheung.120839	0	.	34735899	34737107	0	1	1208	0
chr16	34828686	34830083	MDAMB468_Thompson.14636	0	.	34828686	34830083	0	1	1397	0
chr16	34833392	34837371	MDAMB468_Thompson.14639	0	.	34833392	34837371	0	1	3979	0
chr16	34833554	34834189	MCF10A_Thompson.13231	0	.	34833554	34834189	0	1	635	0
chr16	34834607	34837342	MCF10A_Thompson.13232	0	.	34834607	34837342	0	1	2735	0
chr16	34894731	34895060	B_cells_Cheung.120842	0	.	34894731	34895060	0	1	329	0
chr16	34905777	34906291	B_cells_Cheung.120843	0	.	34905777	34906291	0	1	514	0
chr16	35004772	35006090	B_cells_Cheung.120846	0	.	35004772	35006090	0	1	1318	0
chr16	45246245	45247022	CD4_Plagnol_activated.39054	0	.	45246245	45247022	0	1	777	0
chr16	45246258	45246966	prostate_normal.35492	0	.	45246258	45246966	0	1	708	0
chr16	45247459	45247842	CD4_Plagnol_activated.39116	0	.	45247459	45247842	0	1	383	0
chr16	45350121	45359912	B_Cells_Pritchard.2055833	0	-	45350121	45359912	0	2	750,82	0,9709
chr16	45363209	45364566	H1_polyA+.71066	0	.	45363209	45364566	0	1	1357	0
chr16	45364036	45364515	B_cells_Cheung.120921	0	.	45364036	45364515	0	1	479	0
chr16	45365380	45365777	B_cells_Cheung.120924	0	.	45365380	45365777	0	1	397	0
chr16	45365380	45382867	B_cells_Cheung.120923	0	-	45365380	45382867	0	2	301,1434	0,16053
chr16	45365399	45369534	prostate_carcinoma.60476	0	+	45365399	45369534	0	2	54,408	0,3727
chr16	45369041	45369846	B_cells_Cheung.120926	0	.	45369041	45369846	0	1	805	0
chr16	45369189	45369629	A549_Myers.49900	0	.	45369189	45369629	0	1	440	0
chr16	45369846	45370737	B_cells_Cheung.120927	0	.	45369846	45370737	0	1	891	0
chr16	45380657	45381330	B_cells_Cheung.120937	0	.	45380657	45381330	0	1	673	0
chr16	45381392	45382867	B_cells_Cheung.120925	0	.	45381392	45382867	0	1	1475	0
chr16	45381411	45381755	A549_Myers.49901	0	.	45381411	45381755	0	1	344	0
chr16	45381512	45383004	H1_polyA+.71069	0	.	45381512	45383004	0	1	1492	0
chr16	45381758	45382848	prostate_carcinoma.60481	0	.	45381758	45382848	0	1	1090	0
chr16	45524183	45525449	REMC_MyoepithelialBreast.57519	0	.	45524183	45525449	0	1	1266	0
chr16	45524206	45525363	REMC_BreastStem.31546	0	.	45524206	45525363	0	1	1157	0
chr16	45524212	45525834	REMC_LuminalBreast.61993	0	.	45524212	45525834	0	1	1622	0
chr16	45525955	45529511	REMC_LuminalBreast.62054	0	.	45525955	45529511	0	1	3556	0
chr16	45525963	45528735	REMC_BreastStem.31535	0	.	45525963	45528735	0	1	2772	0
chr16	45527139	45529248	REMC_MyoepithelialBreast.57521	0	.	45527139	45529248	0	1	2109	0
chr16	45532885	45536730	REMC_MyoepithelialBreast.57523	0	.	45532885	45536730	0	1	3845	0
chr16	45534163	45535558	REMC_BreastStem.31549	0	.	45534163	45535558	0	1	1395	0
chr16	45534578	45536582	REMC_LuminalBreast.62058	0	.	45534578	45536582	0	1	2004	0
chr16	45540949	45543368	REMC_BreastStem.31552	0	.	45540949	45543368	0	1	2419	0
chr16	45541552	45542136	CD4_Plagnol_activated.39084	0	.	45541552	45542136	0	1	584	0
chr16	45576050	45576632	B_cells_Cheung.120973	0	.	45576050	45576632	0	1	582	0
chr16	45583186	45584786	B_Cells_Pritchard.2056317	0	.	45583186	45584786	0	1	1600	0
chr16	45583218	45584590	B_cells_Cheung.120980	0	.	45583218	45584590	0	1	1372	0
chr16	45599089	45600453	B_cells_Cheung.120987	0	.	45599089	45600453	0	1	1364	0
chr16	45601253	45625605	B_Cells_Pritchard.2056397	0	-	45601253	45625605	0	3	19,3358,46	0,3154,24306
chr16	45603829	45614778	B_Cells_Pritchard.2056399	0	+	45603829	45614778	0	2	3963,78	0,10871
chr16	45603944	45605312	B_cells_Cheung.120990	0	.	45603944	45605312	0	1	1368	0
chr16	45605368	45608246	B_cells_Cheung.120991	0	.	45605368	45608246	0	1	2878	0
chr16	45617044	45617443	A549_Myers.49926	0	.	45617044	45617443	0	1	399	0
chr16	45626555	45627472	B_Cells_Pritchard.2056467	0	.	45626555	45627472	0	1	917	0
chr16	45628947	45629566	B_Cells_Pritchard.2056475	0	.	45628947	45629566	0	1	619	0
chr16	45643997	45648929	B_Cells_Pritchard.2056545	0	+	45643997	45648929	0	2	24,395	0,4537
chr16	45648019	45648978	prostate_carcinoma.60510	0	.	45648019	45648978	0	1	959	0
chr16	46294342	46294812	REMC_LuminalBreast.62389	0	.	46294342	46294812	0	1	470	0
chr16	46295742	46301605	REMC_LuminalBreast.62391	0	.	46295742	46301605	0	1	5863	0
chr16	46302925	46309446	B_Cells_Pritchard.2066439	0	+	46302925	46309446	0	2	2211,115	0,6406
chr16	46302925	46304892	B_Cells_Pritchard.2066441	0	-	46302925	46304892	0	3	661,735,299	0,720,1668
chr16	46302939	46305004	REMC_LuminalBreast.62393	0	.	46302939	46305004	0	1	2065	0
chr16	46303493	46304832	B_cells_Cheung.121025	0	.	46303493	46304832	0	1	1339	0
chr16	46310074	46310532	B_Cells_Pritchard.2058359	0	.	46310074	46310532	0	1	458	0
chr16	46314974	46317820	REMC_LuminalBreast.62033	0	.	46314974	46317820	0	1	2846	0
chr16	46331119	46334364	REMC_LuminalBreast.62039	0	.	46331119	46334364	0	1	3245	0
chr16	46354080	46354889	REMC_LuminalBreast.62050	0	.	46354080	46354889	0	1	809	0
chr16	46366406	46367875	REMC_LuminalBreast.62053	0	.	46366406	46367875	0	1	1469	0
chr16	46440722	46441359	brain_AmbionMAQC.26840	0	.	46440722	46441359	0	1	637	0
chr16	46445649	46446496	BT474_Burge_Thompson.20171	0	.	46445649	46446496	0	1	847	0
chr16	46446004	46446469	B_Cells_Pritchard.2058739	0	.	46446004	46446469	0	1	465	0
chr16	46749534	46750373	BT474_Burge_Thompson.20177	0	.	46749534	46750373	0	1	839	0
chr16	46749550	46750373	T47D_Burge_Thompson.17701	0	.	46749550	46750373	0	1	823	0
chr16	46750514	46750992	T47D_Burge_Thompson.17702	0	.	46750514	46750992	0	1	478	0
chr16	46753243	46754756	T47D_Burge_Thompson.17704	0	.	46753243	46754756	0	1	1513	0
chr16	46756246	46756655	liver_polyA+.83484	0	.	46756246	46756655	0	1	409	0
chr16	47113349	47117304	pHIT000027110	0	-	47113349	47117304	0	4	25,166,89,66	0,457,3345,3889
chr16	47113806	47117304	pHIT000089665	0	-	47113806	47117304	0	3	166,89,66	0,2888,3432
chr16	47202831	47203559	prostate_carcinoma.60610	0	.	47202831	47203559	0	1	728	0
chr16	47204060	47204892	B_cells_Cheung.121299	0	.	47204060	47204892	0	1	832	0
chr16	47204062	47204681	CD4_Snyder.47175	0	.	47204062	47204681	0	1	619	0
chr16	47204075	47204583	B_Cells_Pritchard.2060645	0	+	47204075	47204583	0	1	508	0
chr16	47206173	47206501	A549_Myers.50000	0	.	47206173	47206501	0	1	328	0
chr16	47211703	47213436	testes_Burge.32068	0	+	47211703	47213436	0	2	90,234	0,1499
chr16	47213659	47227315	B_Cells_Pritchard.2060687	0	-	47213659	47227315	0	3	56,703,644	0,1128,13012
chr16	47214509	47215126	REMC_LuminalBreast.62078	0	.	47214509	47215126	0	1	617	0
chr16	47214702	47215038	A549_Myers.50001	0	.	47214702	47215038	0	1	336	0
chr16	47214745	47228354	B_cells_Cheung.121302	0	+	47214745	47228354	0	2	270,140	0,13469
chr16	47240781	47241555	B_Cells_Pritchard.2060769	0	.	47240781	47241555	0	1	774	0
chr16	47342914	47345204	H1_polyA+.71219	0	.	47342914	47345204	0	1	2290	0
chr16	47522186	47522828	BT474_Burge_Thompson.20187	0	.	47522186	47522828	0	1	642	0
chr16	47522256	47522843	B_Cells_Pritchard.2061401	0	.	47522256	47522843	0	1	587	0
chr16	47522958	47523270	B_Cells_Pritchard.2061403	0	.	47522958	47523270	0	1	312	0
chr16	47522969	47523647	BT474_Burge_Thompson.20188	0	.	47522969	47523647	0	1	678	0
chr16	47523525	47524157	B_Cells_Pritchard.2061405	0	.	47523525	47524157	0	1	632	0
chr16	47523738	47524233	BT474_Burge_Thompson.20186	0	.	47523738	47524233	0	1	495	0
chr16	47887037	47888044	brain_AmbionMAQC.26974	0	.	47887037	47888044	0	1	1007	0
chr16	47888554	47891174	HIT000019166	0	+	47888554	47891174	0	1	2620	0
chr16	47931626	47936885	brain_AmbionMAQC.26879	0	.	47931626	47936885	0	1	5259	0
chr16	47933074	47936801	HIT000046583	0	-	47933074	47936801	0	1	3727	0
chr16	47942050	47942512	A549_Myers.50006	0	.	47942050	47942512	0	1	462	0
chr16	48034928	48044698	Rinn_00024637	0	-	48034928	48044698	0	2	1287,26	0,9744
chr16	48053859	48054167	B_Cells_Pritchard.2062637	0	.	48053859	48054167	0	1	308	0
chr16	48057517	48061308	HIT000096234	0	+	48057517	48061308	0	2	2376,1318	0,2473
chr16	48078965	48080224	H9_polyA+.27446	0	.	48078965	48080224	0	1	1259	0
chr16	48449579	48449923	A549_Myers.50023	0	.	48449579	48449923	0	1	344	0
chr16	48491430	48491936	HIT000071450	0	+	48491430	48491936	0	1	506	0
chr16	48512141	48515566	HIT000013987	0	+	48512141	48515566	0	2	1584,501	0,2924
chr16	48515149	48515543	testes_Burge.32088	0	.	48515149	48515543	0	1	394	0
chr16	48634272	48635337	prostate_carcinoma.60646	0	.	48634272	48635337	0	1	1065	0
chr16	48634678	48635333	B_cells_Cheung.121358	0	.	48634678	48635333	0	1	655	0
chr16	48649563	48650497	melanoma_Garraway_short_term_cultures.42104	0	.	48649563	48650497	0	1	934	0
chr16	48649792	48650367	H1_polyA+.71350	0	.	48649792	48650367	0	1	575	0
chr16	48649829	48650649	pHIT000027114	0	-	48649829	48650649	0	2	382,53	0,767
chr16	48837523	48840626	B_Cells_Pritchard.2065281	0	-	48837523	48840626	0	1	3103	0
chr16	48837896	48838928	B_cells_Cheung.121536	0	.	48837896	48838928	0	1	1032	0
chr16	48837936	48838868	H1_polyA+.71380	0	.	48837936	48838868	0	1	932	0
chr16	48838063	48838482	K562.27608	0	.	48838063	48838482	0	1	419	0
chr16	48844347	48848707	B_cells_Cheung.121542	0	.	48844347	48848707	0	1	4360	0
chr16	48846736	48847744	H1_polyA+.71385	0	.	48846736	48847744	0	1	1008	0
chr16	48850709	48851849	B_Cells_Pritchard.2065105	0	.	48850709	48851849	0	1	1140	0
chr16	48850993	48853245	MIP101.42176	0	.	48850993	48853245	0	1	2252	0
chr16	48852489	48853087	B_Cells_Pritchard.2065111	0	.	48852489	48853087	0	1	598	0
chr16	48852670	48853107	A549_Myers.50048	0	.	48852670	48853107	0	1	437	0
chr16	48854911	48856230	H1_polyA+.71388	0	.	48854911	48856230	0	1	1319	0
chr16	48856545	48857611	MIP101.42178	0	.	48856545	48857611	0	1	1066	0
chr16	48961789	48962746	REMC_LuminalBreast.62152	0	.	48961789	48962746	0	1	957	0
chr16	48966213	48966635	A549_Myers.50064	0	.	48966213	48966635	0	1	422	0
chr16	48990842	48991260	ZR751_Thompson.14853	0	.	48990842	48991260	0	1	418	0
chr16	48991716	48992281	B_Cells_Pritchard.2065551	0	.	48991716	48992281	0	1	565	0
chr16	49227789	49229637	REMC_LuminalBreast.62158	0	.	49227789	49229637	0	1	1848	0
chr16	49228550	49230161	REMC_MyoepithelialBreast.57677	0	.	49228550	49230161	0	1	1611	0
chr16	49228781	49230067	REMC_BreastStem.31599	0	.	49228781	49230067	0	1	1286	0
chr16	49228854	49232821	brain_AmbionMAQC.26928	0	.	49228854	49232821	0	1	3967	0
chr16	49228879	49240620	CD4_Plagnol_resting.38386	0	-	49228879	49240620	0	2	47,2479	0,9262
chr16	49228879	49240620	CD4_Plagnol_resting.38384	0	.	49228879	49240620	0	1	11741	0
chr16	49228951	49237532	MCF10A_Thompson.13288	0	.	49228951	49237532	0	1	8581	0
chr16	49228955	49233903	MDAMB468_Thompson.14698	0	.	49228955	49233903	0	1	4948	0
chr16	49228958	49240938	MIP101.41982	0	.	49228958	49240938	0	1	11980	0
chr16	49228959	49240620	CD4_Plagnol_activated.39246	0	.	49228959	49240620	0	1	11661	0
chr16	49228962	49235164	prostate_normal.35684	0	.	49228962	49235164	0	1	6202	0
chr16	49228964	49240720	prostate_carcinoma.60687	0	.	49228964	49240720	0	1	11756	0
chr16	49228964	49240720	prostate_carcinoma.60686	0	-	49228964	49240720	0	2	1444,5911	0,5845
chr16	49228973	49230344	melanoma_Garraway_short_term_cultures.42133	0	.	49228973	49230344	0	1	1371	0
chr16	49228987	49229340	NEC_from_H9.45746	0	.	49228987	49229340	0	1	353	0
chr16	49229004	49232152	HIT000007058	0	-	49229004	49232152	0	1	3148	0
chr16	49229010	49231247	ZR751_Thompson.14860	0	.	49229010	49231247	0	1	2237	0
chr16	49229279	49232194	HIT000004975	0	-	49229279	49232194	0	1	2915	0
chr16	49229889	49231014	NEC_from_H9.45748	0	.	49229889	49231014	0	1	1125	0
chr16	49230200	49231111	testes_Burge.32129	0	.	49230200	49231111	0	1	911	0
chr16	49230217	49231076	B_Cells_Pritchard.2066273	0	.	49230217	49231076	0	1	859	0
chr16	49230244	49231382	H9_polyA+.27485	0	.	49230244	49231382	0	1	1138	0
chr16	49230318	49231143	liver_polyA+.83714	0	.	49230318	49231143	0	1	825	0
chr16	49230334	49231749	REMC_MyoepithelialBreast.57678	0	.	49230334	49231749	0	1	1415	0
chr16	49232269	49233537	REMC_MyoepithelialBreast.57679	0	.	49232269	49233537	0	1	1268	0
chr16	49232876	49234017	REMC_LuminalBreast.62166	0	.	49232876	49234017	0	1	1141	0
chr16	49232895	49233854	H9_polyA+.27487	0	.	49232895	49233854	0	1	959	0
chr16	49232941	49233934	brain_AmbionMAQC.26927	0	.	49232941	49233934	0	1	993	0
chr16	49233594	49234986	B_Cells_Pritchard.2066283	0	.	49233594	49234986	0	1	1392	0
chr16	49233905	49235219	H9_polyA+.27488	0	.	49233905	49235219	0	1	1314	0
chr16	49233971	49234904	melanoma_Garraway_short_term_cultures.42135	0	.	49233971	49234904	0	1	933	0
chr16	49233984	49235170	brain_AmbionMAQC.26929	0	.	49233984	49235170	0	1	1186	0
chr16	49234015	49236814	MDAMB468_Thompson.14699	0	.	49234015	49236814	0	1	2799	0
chr16	49234049	49237334	REMC_MyoepithelialBreast.57680	0	.	49234049	49237334	0	1	3285	0
chr16	49234293	49235776	REMC_BreastStem.31601	0	.	49234293	49235776	0	1	1483	0
chr16	49235164	49240609	prostate_normal.35685	0	.	49235164	49240609	0	1	5445	0
chr16	49235222	49237457	brain_AmbionMAQC.26930	0	.	49235222	49237457	0	1	2235	0
chr16	49236004	49237517	B_Cells_Pritchard.2066287	0	.	49236004	49237517	0	1	1513	0
chr16	49236503	49237283	REMC_BreastStem.31602	0	.	49236503	49237283	0	1	780	0
chr16	49236911	49240605	MDAMB468_Thompson.14697	0	.	49236911	49240605	0	1	3694	0
chr16	49237042	49237505	H9_polyA+.27492	0	.	49237042	49237505	0	1	463	0
chr16	49237151	49237526	colon_Burge.22894	0	.	49237151	49237526	0	1	375	0
chr16	49237194	49237507	NEC_from_H9.45756	0	.	49237194	49237507	0	1	313	0
chr16	49237385	49240651	REMC_BreastStem.31603	0	.	49237385	49240651	0	1	3266	0
chr16	49237590	49240620	H9_polyA+.27493	0	.	49237590	49240620	0	1	3030	0
chr16	49237590	49240597	MCF10A_Thompson.13287	0	.	49237590	49240597	0	1	3007	0
chr16	49237699	49240716	B_Cells_Pritchard.2066289	0	.	49237699	49240716	0	1	3017	0
chr16	49237709	49240610	brain_AmbionMAQC.26931	0	.	49237709	49240610	0	1	2901	0
chr16	49238024	49238443	testes_Burge.32123	0	.	49238024	49238443	0	1	419	0
chr16	49238083	49240543	REMC_MyoepithelialBreast.57681	0	.	49238083	49240543	0	1	2460	0
chr16	49238137	49239916	REMC_LuminalBreast.62168	0	.	49238137	49239916	0	1	1779	0
chr16	49239746	49240085	colon_Burge.22898	0	.	49239746	49240085	0	1	339	0
chr16	49241452	49242508	HepG2_Caltech_ENCODE.22793	0	.	49241452	49242508	0	1	1056	0
chr16	49241632	49242844	CD4_Plagnol_resting.38387	0	.	49241632	49242844	0	1	1212	0
chr16	49241656	49242430	prostate_carcinoma.60688	0	.	49241656	49242430	0	1	774	0
chr16	49241846	49242733	B_Cells_Pritchard.2066297	0	.	49241846	49242733	0	1	887	0
chr16	49243139	49243840	prostate_carcinoma.60689	0	.	49243139	49243840	0	1	701	0
chr16	49243316	49244330	CD4_Plagnol_resting.38388	0	.	49243316	49244330	0	1	1014	0
chr16	49243614	49244794	HepG2_Caltech_ENCODE.22794	0	.	49243614	49244794	0	1	1180	0
chr16	49244465	49247836	B_Cells_Pritchard.2066305	0	.	49244465	49247836	0	1	3371	0
chr16	49246572	49248345	CD4_Plagnol_activated.39239	0	.	49246572	49248345	0	1	1773	0
chr16	49246751	49248387	HepG2_Caltech_ENCODE.22796	0	.	49246751	49248387	0	1	1636	0
chr16	49248460	49249723	CD4_Plagnol_activated.39240	0	.	49248460	49249723	0	1	1263	0
chr16	49248674	49249986	B_Cells_Pritchard.2066311	0	.	49248674	49249986	0	1	1312	0
chr16	49248823	49249965	prostate_carcinoma.60692	0	.	49248823	49249965	0	1	1142	0
chr16	49250487	49254520	HepG2_Caltech_ENCODE.22798	0	.	49250487	49254520	0	1	4033	0
chr16	49250595	49252466	CD4_Plagnol_resting.38307	0	.	49250595	49252466	0	1	1871	0
chr16	49250700	49251252	CD4_Plagnol_activated.39241	0	.	49250700	49251252	0	1	552	0
chr16	49252611	49254519	CD4_Plagnol_resting.38309	0	.	49252611	49254519	0	1	1908	0
chr16	49252677	49254446	CD4_Plagnol_activated.39243	0	.	49252677	49254446	0	1	1769	0
chr16	49252683	49254589	B_Cells_Pritchard.2066319	0	.	49252683	49254589	0	1	1906	0
chr16	49252828	49253845	H1_polyA+.71416	0	.	49252828	49253845	0	1	1017	0
chr16	49253014	49254669	prostate_carcinoma.60693	0	.	49253014	49254669	0	1	1655	0
chr16	49255022	49256437	B_cells_Cheung.121447	0	.	49255022	49256437	0	1	1415	0
chr16	49255644	49256690	CD4_Plagnol_activated.39244	0	.	49255644	49256690	0	1	1046	0
chr16	49255716	49256343	prostate_normal.35669	0	.	49255716	49256343	0	1	627	0
chr16	49279320	49279825	B_Cells_Pritchard.2066361	0	.	49279320	49279825	0	1	505	0
chr16	49283712	49284427	REMC_LuminalBreast.62757	0	.	49283712	49284427	0	1	715	0
chr16	49326146	49328624	CD4_Plagnol_activated.39421	0	.	49326146	49328624	0	1	2478	0
chr16	49326161	49328855	prostate_carcinoma.60718	0	.	49326161	49328855	0	1	2694	0
chr16	49326172	49327666	H1_polyA+.71419	0	.	49326172	49327666	0	1	1494	0
chr16	49326190	49327703	BT20_Thompson.13061	0	.	49326190	49327703	0	1	1513	0
chr16	49327626	49328221	CD4_Snyder.47303	0	.	49327626	49328221	0	1	595	0
chr16	49329395	49330282	CD4_Plagnol_activated.39422	0	.	49329395	49330282	0	1	887	0
chr16	49330401	49331515	CD4_Plagnol_activated.39423	0	.	49330401	49331515	0	1	1114	0
chr16	49399375	49400700	REMC_LuminalBreast.62169	0	.	49399375	49400700	0	1	1325	0
chr16	49400348	49401163	CD4_Plagnol_activated.39265	0	.	49400348	49401163	0	1	815	0
chr16	49400574	49404896	REMC_BreastStem.31620	0	.	49400574	49404896	0	1	4322	0
chr16	49400806	49402081	REMC_LuminalBreast.62170	0	.	49400806	49402081	0	1	1275	0
chr16	49401840	49427330	pHIT000027129	0	+	49401840	49427330	0	3	80,166,138	0,24880,25352
chr16	49402148	49406230	REMC_LuminalBreast.62171	0	.	49402148	49406230	0	1	4082	0
chr16	49406335	49408634	REMC_LuminalBreast.62172	0	.	49406335	49408634	0	1	2299	0
chr16	49407309	49408405	REMC_BreastStem.31622	0	.	49407309	49408405	0	1	1096	0
chr16	49408601	49409565	REMC_BreastStem.31623	0	.	49408601	49409565	0	1	964	0
chr16	49410041	49412425	REMC_BreastStem.31624	0	.	49410041	49412425	0	1	2384	0
chr16	49410401	49412857	REMC_LuminalBreast.62174	0	.	49410401	49412857	0	1	2456	0
chr16	49412975	49419057	REMC_LuminalBreast.62175	0	.	49412975	49419057	0	1	6082	0
chr16	49414428	49418269	REMC_BreastStem.31626	0	.	49414428	49418269	0	1	3841	0
chr16	49426705	49427678	REMC_MyoepithelialBreast.57874	0	.	49426705	49427678	0	1	973	0
chr16	49431537	49431851	A549_Myers.50100	0	.	49431537	49431851	0	1	314	0
chr16	49454912	49455574	A549_Myers.50101	0	.	49454912	49455574	0	1	662	0
chr16	49471447	49475721	Rinn_00024393	0	+	49471447	49475721	0	3	226,287,99	0,1870,4175
chr16	49471628	49473977	H9_polyA+.27499	0	+	49471628	49473977	0	2	45,659	0,1690
chr16	49473314	49485234	REMC_MyoepithelialBreast.57705	0	+	49473314	49485234	0	4	290,236,266,162	0,2139,2579,11758
chr16	49600633	49602196	HepG2_Caltech_ENCODE.22478	0	.	49600633	49602196	0	1	1563	0
chr16	49608982	49627171	Rinn_00024395	0	+	49608982	49627171	0	4	325,58,253,225	0,4648,7236,17964
chr16	49614978	49620306	HepG2_Caltech_ENCODE.22482	0	.	49614978	49620306	0	1	5328	0
chr16	49630254	49632091	HepG2_Caltech_ENCODE.22489	0	.	49630254	49632091	0	1	1837	0
chr16	49635381	49637179	HepG2_Caltech_ENCODE.22490	0	.	49635381	49637179	0	1	1798	0
chr16	49640102	49641950	HepG2_Caltech_ENCODE.22491	0	.	49640102	49641950	0	1	1848	0
chr16	49644697	49645604	HepG2_Caltech_ENCODE.22492	0	.	49644697	49645604	0	1	907	0
chr16	49648451	49648899	liver_polyA+.83756	0	.	49648451	49648899	0	1	448	0
chr16	49744887	49745446	brain_AmbionMAQC.26939	0	.	49744887	49745446	0	1	559	0
chr16	49749997	49751632	H1_polyA+.71432	0	.	49749997	49751632	0	1	1635	0
chr16	49752937	49753675	liver_polyA+.83782	0	.	49752937	49753675	0	1	738	0
chr16	49755025	49755431	liver_polyA+.83783	0	.	49755025	49755431	0	1	406	0
chr16	49756236	49767873	khalil_843	0	.	49756236	49767873	0	5	47,114,1866,782,261	0,1467,3512,5418,11376
chr16	49757604	49759316	H1_polyA+.71434	0	.	49757604	49759316	0	1	1712	0
chr16	49771776	49773579	H1_polyA+.71439	0	.	49771776	49773579	0	1	1803	0
chr16	49776309	49776914	B_Cells_Pritchard.2067591	0	.	49776309	49776914	0	1	605	0
chr16	49830828	49831629	ovary_Raymond.163048	0	+	49830828	49831629	0	3	164,76,105	0,195,696
chr16	49979105	50101371	Rinn_00024645	0	-	49979105	50101371	0	4	1059,128,106,50	0,16807,107407,122216
chr16	49979105	50116948	Rinn_00024646	0	-	49979105	50116948	0	4	1059,128,106,674	0,16807,107407,137169
chr16	50017186	50019178	liver_polyA+.83806	0	.	50017186	50019178	0	1	1992	0
chr16	50017559	50019178	kidney_Gilad.53966	0	.	50017559	50019178	0	1	1619	0
chr16	50032802	50033420	kidney_Gilad.53973	0	.	50032802	50033420	0	1	618	0
chr16	50032802	50033420	liver_polyA+.83817	0	.	50032802	50033420	0	1	618	0
chr16	50035466	50035926	liver_polyA+.83819	0	.	50035466	50035926	0	1	460	0
chr16	50048842	50049659	kidney_Gilad.53978	0	+	50048842	50049659	0	3	165,153,215	0,225,602
chr16	50054598	50055226	liver_polyA+.83830	0	.	50054598	50055226	0	1	628	0
chr16	50077976	50078362	liver_polyA+.83852	0	.	50077976	50078362	0	1	386	0
chr16	50080728	50081460	liver_polyA+.83855	0	.	50080728	50081460	0	1	732	0
chr16	50081510	50082188	liver_polyA+.83856	0	.	50081510	50082188	0	1	678	0
chr16	50362989	50386430	Rinn_00024403	0	+	50362989	50386430	0	4	95,182,154,177	0,800,6137,23264
chr16	50576897	50586126	REMC_LuminalBreast.62178	0	-	50576897	50586126	0	2	767,216	0,9013
chr16	50883820	50885202	BT474_Burge_Thompson.20223	0	.	50883820	50885202	0	1	1382	0
chr16	51167429	51167974	HepG2_Caltech_ENCODE.22541	0	.	51167429	51167974	0	1	545	0
chr16	51169533	51170048	HepG2_Caltech_ENCODE.22534	0	.	51169533	51170048	0	1	515	0
chr16	51964792	51965154	A549_Myers.50138	0	.	51964792	51965154	0	1	362	0
chr16	51964825	51970008	prostate_normal.35721	0	+	51964825	51970008	0	2	465,104	0,5079
chr16	51964885	51965287	T47D_Burge_Thompson.17525	0	.	51964885	51965287	0	1	402	0
chr16	51964905	51965279	CD4_Snyder.47348	0	.	51964905	51965279	0	1	374	0
chr16	51969256	51982799	B_Cells_Pritchard.2072483	0	-	51969256	51982799	0	4	1087,1492,2748,1806	0,6551,8181,11737
chr16	51977616	51980108	MDAMB468_Thompson.14758	0	.	51977616	51980108	0	1	2492	0
chr16	51977707	51980452	CD4_Snyder.47350	0	.	51977707	51980452	0	1	2745	0
chr16	51977845	51980464	prostate_carcinoma.60785	0	.	51977845	51980464	0	1	2619	0
chr16	51977849	51980478	T47D_Burge_Thompson.17527	0	.	51977849	51980478	0	1	2629	0
chr16	51978243	51980038	REMC_LuminalBreast.62260	0	.	51978243	51980038	0	1	1795	0
chr16	51978741	51980079	prostate_normal.35725	0	.	51978741	51980079	0	1	1338	0
chr16	52096145	52096581	A549_Myers.50151	0	.	52096145	52096581	0	1	436	0
chr16	52141332	52141740	pHIT000027149	0	-	52141332	52141740	0	1	408	0
chr16	52141803	52142367	BT474_Burge_Thompson.20238	0	.	52141803	52142367	0	1	564	0
chr16	52141844	52142225	B_Cells_Pritchard.2073131	0	.	52141844	52142225	0	1	381	0
chr16	52153202	52153532	B_Cells_Pritchard.2073179	0	.	52153202	52153532	0	1	330	0
chr16	52185346	52187286	H1_polyA+.71563	0	.	52185346	52187286	0	1	1940	0
chr16	52709881	52711259	prostate_carcinoma.60858	0	.	52709881	52711259	0	1	1378	0
chr16	52709951	52713304	MIP101.42123	0	.	52709951	52713304	0	1	3353	0
chr16	52710981	52712123	prostate_normal.35761	0	.	52710981	52712123	0	1	1142	0
chr16	52711076	52711814	B_Cells_Pritchard.2075407	0	.	52711076	52711814	0	1	738	0
chr16	52711282	52712011	B_cells_Cheung.121777	0	.	52711282	52712011	0	1	729	0
chr16	52711357	52711825	brain_AmbionMAQC.26990	0	.	52711357	52711825	0	1	468	0
chr16	52879037	52880144	prostate_normal.35775	0	.	52879037	52880144	0	1	1107	0
chr16	52879331	52881245	T47D_Burge_Thompson.17550	0	.	52879331	52881245	0	1	1914	0
chr16	52879638	52880357	BT474_Burge_Thompson.20263	0	.	52879638	52880357	0	1	719	0
chr16	52879657	52880196	HepG2_Caltech_ENCODE.22606	0	.	52879657	52880196	0	1	539	0
chr16	52880144	52881235	prostate_normal.35768	0	.	52880144	52881235	0	1	1091	0
chr16	52880220	52881263	MeWo_Garraway.21998	0	.	52880220	52881263	0	1	1043	0
chr16	52880266	52881283	HepG2_Caltech_ENCODE.22607	0	.	52880266	52881283	0	1	1017	0
chr16	52880280	52881294	REMC_LuminalBreast.62402	0	.	52880280	52881294	0	1	1014	0
chr16	52880288	52881089	melanoma_Garraway_short_term_cultures.42223	0	.	52880288	52881089	0	1	801	0
chr16	52880346	52881129	MCF10A_Thompson.13322	0	.	52880346	52881129	0	1	783	0
chr16	52880426	52881135	ZR751_Thompson.14923	0	.	52880426	52881135	0	1	709	0
chr16	52880460	52881023	A549_Myers.50177	0	.	52880460	52881023	0	1	563	0
chr16	52880461	52882595	REMC_MyoepithelialBreast.57792	0	.	52880461	52882595	0	1	2134	0
chr16	52880464	52881245	MDAMB468_Thompson.14738	0	.	52880464	52881245	0	1	781	0
chr16	52881653	52883756	BT474_Burge_Thompson.20264	0	.	52881653	52883756	0	1	2103	0
chr16	52881657	52882823	ZR751_Thompson.14924	0	.	52881657	52882823	0	1	1166	0
chr16	52881674	52882042	HME_Burge.24483	0	.	52881674	52882042	0	1	368	0
chr16	52881681	52882734	melanoma_Garraway_short_term_cultures.42224	0	.	52881681	52882734	0	1	1053	0
chr16	52882725	52883079	HME_Burge.24485	0	.	52882725	52883079	0	1	354	0
chr16	52887893	52889095	REMC_MyoepithelialBreast.57795	0	.	52887893	52889095	0	1	1202	0
chr16	52894506	52895833	prostate_carcinoma.60863	0	.	52894506	52895833	0	1	1327	0
chr16	52895037	52895712	prostate_normal.35762	0	.	52895037	52895712	0	1	675	0
chr16	52898777	52899238	prostate_normal.35765	0	.	52898777	52899238	0	1	461	0
chr16	52899292	52899830	prostate_normal.35766	0	.	52899292	52899830	0	1	538	0
chr16	52900137	52902198	prostate_carcinoma.60864	0	.	52900137	52902198	0	1	2061	0
chr16	53312315	53368431	pHIT000027152	0	-	53312315	53368431	0	4	178,91,95,307	0,21059,23011,55809
chr16	53456112	53460268	REMC_MyoepithelialBreast.57800	0	-	53456112	53460268	0	2	298,1288	0,2868
chr16	53458414	53460151	REMC_MyoepithelialBreast.57802	0	.	53458414	53460151	0	1	1737	0
chr16	53466481	53468391	REMC_MyoepithelialBreast.57806	0	.	53466481	53468391	0	1	1910	0
chr16	53474154	53475095	REMC_LuminalBreast.62574	0	.	53474154	53475095	0	1	941	0
chr16	53487825	53490216	REMC_MyoepithelialBreast.57813	0	.	53487825	53490216	0	1	2391	0
chr16	53488971	53490210	REMC_LuminalBreast.62578	0	.	53488971	53490210	0	1	1239	0
chr16	53498755	53501778	REMC_LuminalBreast.62583	0	.	53498755	53501778	0	1	3023	0
chr16	53500770	53501444	REMC_BreastStem.31673	0	.	53500770	53501444	0	1	674	0
chr16	53509243	53520301	REMC_BreastStem.31670	0	-	53509243	53520301	0	6	1379,113,66,113,228,119	0,2467,5754,7270,10663,10939
chr16	53509313	53520572	K562.27689	0	-	53509313	53520572	0	6	1309,2186,1152,113,131,390	0,1936,4598,7200,10593,10869
chr16	53509410	53520589	MIP101.42131	0	-	53509410	53520589	0	5	1212,113,2934,113,407	0,2300,3615,7103,10772
chr16	53510277	53520580	Rinn_00024236	0	-	53510277	53520580	0	5	345,114,67,114,399	0,1432,4719,6235,9904
chr16	53510278	53520580	NR_034105	0	-	53510278	53520580	0	5	344,113,66,113,398	0,1432,4719,6235,9904
chr16	53510291	53520594	B_cells_Cheung.121793	0	-	53510291	53520594	0	6	331,275,66,113,136,412	0,1257,4706,6222,9615,9891
chr16	53510324	53520541	HeLa_polyA+_Chen.22245	0	-	53510324	53520541	0	6	298,277,769,113,43,359	0,1222,3970,6189,9582,9858
chr16	53510332	53520534	B_Cells_Pritchard.2077489	0	-	53510332	53520534	0	5	290,1201,66,141,628	0,290,4665,6153,9574
chr16	53510344	53520598	MDAMB231_Thompson.13751	0	-	53510344	53520598	0	5	278,113,66,113,692	0,1366,4653,6169,9562
chr16	53510376	53520604	MDAMB468_Thompson.14750	0	-	53510376	53520604	0	5	246,113,66,113,422	0,1334,4621,6137,9806
chr16	53511342	53520546	Rinn_00024664	0	-	53511342	53520546	0	4	481,67,114,365	0,3654,5170,8839
chr16	53514357	53515236	H1_polyA+.71580	0	.	53514357	53515236	0	1	879	0
chr16	53514364	53514815	brain_AmbionMAQC.26995	0	.	53514364	53514815	0	1	451	0
chr16	53516348	53520546	Rinn_00024665	0	-	53516348	53520546	0	2	278,365	0,3833
chr16	53516358	53520604	H9_polyA+.27569	0	-	53516358	53520604	0	2	268,422	0,3824
chr16	53519830	53520605	MB435_Burge.25708	0	.	53519830	53520605	0	1	775	0
chr16	53519902	53520606	testes_Burge.32211	0	.	53519902	53520606	0	1	704	0
chr16	53520182	53520551	brain_AmbionMAQC.26996	0	.	53520182	53520551	0	1	369	0
chr16	53520741	53521473	HME_Burge.24490	0	.	53520741	53521473	0	1	732	0
chr16	53527592	53529476	REMC_LuminalBreast.62587	0	-	53527592	53529476	0	2	1173,294	0,1590
chr16	53529197	53530057	prostate_carcinoma.60890	0	.	53529197	53530057	0	1	860	0
chr16	53531300	53535553	REMC_LuminalBreast.62588	0	.	53531300	53535553	0	1	4253	0
chr16	53531755	53539687	REMC_MyoepithelialBreast.57816	0	.	53531755	53539687	0	1	7932	0
chr16	53538465	53541057	REMC_LuminalBreast.62590	0	.	53538465	53541057	0	1	2592	0
chr16	53539815	53540883	REMC_MyoepithelialBreast.57817	0	.	53539815	53540883	0	1	1068	0
chr16	53539947	53540744	prostate_carcinoma.60892	0	.	53539947	53540744	0	1	797	0
chr16	53543071	53546084	REMC_MyoepithelialBreast.57820	0	+	53543071	53546084	0	2	919,323	0,2690
chr16	53594743	53673235	pHIT000115698	0	-	53594743	53673235	0	4	123,96,170,22	0,15793,33308,78470
chr16	53610580	53611608	BT474_Burge_Thompson.20265	0	.	53610580	53611608	0	1	1028	0
chr16	53633928	53635060	B_cells_Cheung.121806	0	.	53633928	53635060	0	1	1132	0
chr16	53647787	53648112	A549_Myers.50206	0	.	53647787	53648112	0	1	325	0
chr16	53663001	53663616	B_cells_Cheung.121809	0	.	53663001	53663616	0	1	615	0
chr16	53820188	53820721	B_cells_Cheung.121811	0	.	53820188	53820721	0	1	533	0
chr16	53820203	53820787	B_Cells_Pritchard.2078207	0	.	53820203	53820787	0	1	584	0
chr16	53850892	53852658	B_cells_Cheung.121817	0	.	53850892	53852658	0	1	1766	0
chr16	53850909	53852508	B_Cells_Pritchard.2078327	0	.	53850909	53852508	0	1	1599	0
chr16	53854078	53857303	B_Cells_Pritchard.2078333	0	.	53854078	53857303	0	1	3225	0
chr16	53854505	53855250	B_cells_Cheung.121821	0	.	53854505	53855250	0	1	745	0
chr16	53856650	53857313	B_cells_Cheung.121824	0	.	53856650	53857313	0	1	663	0
chr16	53857437	53857979	B_Cells_Pritchard.2078329	0	.	53857437	53857979	0	1	542	0
chr16	53870747	53871376	B_cells_Cheung.121831	0	.	53870747	53871376	0	1	629	0
chr16	53923345	53925239	MDAMB468_Thompson.14747	0	.	53923345	53925239	0	1	1894	0
chr16	53937686	53938251	B_cells_Cheung.121849	0	.	53937686	53938251	0	1	565	0
chr16	54615962	54616526	B_Cells_Pritchard.2080145	0	.	54615962	54616526	0	1	564	0
chr16	54666905	54667976	prostate_carcinoma.60917	0	.	54666905	54667976	0	1	1071	0
chr16	54666996	54668053	brain_AmbionMAQC.27010	0	.	54666996	54668053	0	1	1057	0
chr16	54684382	54782507	HIT000093700	0	-	54684382	54782507	0	5	549,167,288,98,1593	0,8076,9062,94633,96532
chr16	54684399	54782507	NR_027078	0	-	54684399	54782507	0	5	532,167,288,98,1593	0,8059,9045,94616,96515
chr16	54684399	54782507	ENST00000501259	0	-	54684399	54782507	0	5	532,167,288,98,1593	0,8059,9045,94616,96515
chr16	54689346	54690124	prostate_carcinoma.60918	0	.	54689346	54690124	0	1	778	0
chr16	54690205	54691611	prostate_carcinoma.60919	0	.	54690205	54691611	0	1	1406	0
chr16	54692628	54693739	prostate_carcinoma.60920	0	.	54692628	54693739	0	1	1111	0
chr16	54703204	54728149	Rinn_00024853	0	+	54703204	54728149	0	4	156,64,67,91	0,13181,20437,24854
chr16	54703204	54728176	Rinn_00024854	0	+	54703204	54728176	0	3	156,64,118	0,13181,24854
chr16	54730835	54734101	prostate_carcinoma.60922	0	-	54730835	54734101	0	2	78,449	0,2817
chr16	54733421	54782629	H1_polyA+.71598	0	-	54733421	54782629	0	3	2004,249,1715	0,9561,47493
chr16	54733694	54734126	liver_polyA+.84179	0	.	54733694	54734126	0	1	432	0
chr16	55511656	55512478	B_cells_Cheung.121991	0	.	55511656	55512478	0	1	822	0
chr16	55538564	55539533	melanoma_Garraway_short_term_cultures.42288	0	.	55538564	55539533	0	1	969	0
chr16	55539667	55546114	REMC_BreastStem.34320	0	.	55539667	55546114	0	1	6447	0
chr16	55540645	55542418	REMC_LuminalBreast.62614	0	.	55540645	55542418	0	1	1773	0
chr16	55541204	55543246	REMC_MyoepithelialBreast.57925	0	.	55541204	55543246	0	1	2042	0
chr16	55541249	55541970	B_cells_Cheung.122615	0	.	55541249	55541970	0	1	721	0
chr16	55542411	55542980	A549_Myers.50319	0	.	55542411	55542980	0	1	569	0
chr16	55543349	55546081	REMC_MyoepithelialBreast.57926	0	.	55543349	55546081	0	1	2732	0
chr16	55543589	55545021	REMC_LuminalBreast.62615	0	.	55543589	55545021	0	1	1432	0
chr16	55546535	55550257	REMC_MyoepithelialBreast.57927	0	.	55546535	55550257	0	1	3722	0
chr16	55548816	55549313	REMC_LuminalBreast.62617	0	.	55548816	55549313	0	1	497	0
chr16	55548871	55549185	B_Cells_Pritchard.2081757	0	.	55548871	55549185	0	1	314	0
chr16	55550320	55551237	REMC_MyoepithelialBreast.57928	0	.	55550320	55551237	0	1	917	0
chr16	55576893	55578672	REMC_MyoepithelialBreast.57934	0	.	55576893	55578672	0	1	1779	0
chr16	55577431	55577995	prostate_normal.35854	0	.	55577431	55577995	0	1	564	0
chr16	55680026	55681956	REMC_LuminalBreast.62641	0	.	55680026	55681956	0	1	1930	0
chr16	55681417	55682186	B_cells_Cheung.122034	0	.	55681417	55682186	0	1	769	0
chr16	55891348	55891685	K562.27748	0	.	55891348	55891685	0	1	337	0
chr16	55904874	55905376	BT474_Burge_Thompson.20317	0	.	55904874	55905376	0	1	502	0
chr16	55908497	55908798	A549_Myers.50353	0	.	55908497	55908798	0	1	301	0
chr16	55931847	55933421	REMC_LuminalBreast.62667	0	.	55931847	55933421	0	1	1574	0
chr16	55932007	55934155	B_cells_Cheung.122077	0	.	55932007	55934155	0	1	2148	0
chr16	55938839	55939416	B_cells_Cheung.122283	0	.	55938839	55939416	0	1	577	0
chr16	55959131	55959930	REMC_LuminalBreast.62670	0	.	55959131	55959930	0	1	799	0
chr16	55978809	55984157	REMC_MyoepithelialBreast.57997	0	.	55978809	55984157	0	1	5348	0
chr16	55979906	55980456	B_cells_Cheung.122116	0	.	55979906	55980456	0	1	550	0
chr16	55982256	55983466	melanoma_Garraway_short_term_cultures.42326	0	.	55982256	55983466	0	1	1210	0
chr16	55984304	55987656	REMC_MyoepithelialBreast.57983	0	.	55984304	55987656	0	1	3352	0
chr16	55991673	55994559	REMC_LuminalBreast.64436	0	.	55991673	55994559	0	1	2886	0
chr16	56009835	56014353	REMC_LuminalBreast.62693	0	.	56009835	56014353	0	1	4518	0
chr16	56012417	56012954	B_cells_Cheung.122133	0	.	56012417	56012954	0	1	537	0
chr16	56014599	56015288	REMC_MyoepithelialBreast.57988	0	.	56014599	56015288	0	1	689	0
chr16	56014602	56015079	B_cells_Cheung.122136	0	.	56014602	56015079	0	1	477	0
chr16	56014667	56015435	REMC_LuminalBreast.62694	0	.	56014667	56015435	0	1	768	0
chr16	56014679	56015352	H1_polyA+.71690	0	.	56014679	56015352	0	1	673	0
chr16	56015645	56017133	REMC_LuminalBreast.62695	0	.	56015645	56017133	0	1	1488	0
chr16	56015781	56017135	H1_polyA+.71691	0	.	56015781	56017135	0	1	1354	0
chr16	56015994	56017091	B_cells_Cheung.122139	0	.	56015994	56017091	0	1	1097	0
chr16	56131693	56132341	H9_polyA+.27663	0	.	56131693	56132341	0	1	648	0
chr16	56184244	56184913	B_cells_Cheung.122197	0	.	56184244	56184913	0	1	669	0
chr16	56185681	56186536	B_Cells_Pritchard.2083193	0	+	56185681	56186536	0	1	855	0
chr16	56185833	56186890	B_cells_Cheung.122198	0	.	56185833	56186890	0	1	1057	0
chr16	56191631	56192296	A549_Myers.50399	0	.	56191631	56192296	0	1	665	0
chr16	56191712	56192654	B_cells_Cheung.122201	0	.	56191712	56192654	0	1	942	0
chr16	56685157	56685680	B_Cells_Pritchard.2084607	0	.	56685157	56685680	0	1	523	0
chr16	56688677	56689096	A549_Myers.50477	0	.	56688677	56689096	0	1	419	0
chr16	56690684	56691503	B_Cells_Pritchard.2084629	0	.	56690684	56691503	0	1	819	0
chr16	56702723	56703271	B_Cells_Pritchard.2084679	0	.	56702723	56703271	0	1	548	0
chr16	56730947	56731552	B_cells_Cheung.122256	0	.	56730947	56731552	0	1	605	0
chr16	56734942	56743182	B_Cells_Pritchard.2084719	0	+	56734942	56743182	0	5	1802,1542,684,83,460	0,2355,6037,7593,7780
chr16	56735699	56736714	B_cells_Cheung.122394	0	.	56735699	56736714	0	1	1015	0
chr16	56735720	56736746	H1_polyA+.71769	0	.	56735720	56736746	0	1	1026	0
chr16	56737198	56738914	B_cells_Cheung.122395	0	.	56737198	56738914	0	1	1716	0
chr16	56739079	56740595	B_cells_Cheung.122396	0	.	56739079	56740595	0	1	1516	0
chr16	56743429	56746332	B_cells_Cheung.122400	0	.	56743429	56746332	0	1	2903	0
chr16	56744951	56746294	B_Cells_Pritchard.2084749	0	.	56744951	56746294	0	1	1343	0
chr16	56910614	56910983	B_Cells_Pritchard.2085029	0	.	56910614	56910983	0	1	369	0
chr16	56910728	56911035	BT474_Burge_Thompson.20374	0	.	56910728	56911035	0	1	307	0
chr16	56928318	56928897	prostate_carcinoma.61126	0	.	56928318	56928897	0	1	579	0
chr16	56955399	56955843	BT474_Burge_Thompson.20377	0	.	56955399	56955843	0	1	444	0
chr16	56955408	56955911	B_Cells_Pritchard.2085159	0	.	56955408	56955911	0	1	503	0
chr16	56976088	56977269	REMC_LuminalBreast.62754	0	.	56976088	56977269	0	1	1181	0
chr16	57012672	57013319	B_cells_Cheung.122289	0	.	57012672	57013319	0	1	647	0
chr16	57013945	57015184	B_cells_Cheung.122290	0	.	57013945	57015184	0	1	1239	0
chr16	57014105	57034586	Rinn_00024424	0	+	57014105	57034586	0	3	648,133,6027	0,12990,14454
chr16	57021830	57022371	B_cells_Cheung.122296	0	.	57021830	57022371	0	1	541	0
chr16	57023564	57024243	B_cells_Cheung.122298	0	.	57023564	57024243	0	1	679	0
chr16	57024793	57030851	B_cells_Cheung.122299	0	+	57024793	57030851	0	2	560,3755	0,2303
chr16	57031004	57031958	B_cells_Cheung.122301	0	.	57031004	57031958	0	1	954	0
chr16	57032038	57032668	B_cells_Cheung.122302	0	.	57032038	57032668	0	1	630	0
chr16	57034713	57038033	B_cells_Cheung.122304	0	.	57034713	57038033	0	1	3320	0
chr16	57042641	57043385	B_cells_Cheung.122311	0	.	57042641	57043385	0	1	744	0
chr16	57248104	57248644	BT474_Burge_Thompson.20383	0	.	57248104	57248644	0	1	540	0
chr16	57251173	57253405	REMC_LuminalBreast.62767	0	.	57251173	57253405	0	1	2232	0
chr16	57345076	57345603	A549_Myers.50550	0	.	57345076	57345603	0	1	527	0
chr16	61582813	61583391	prostate_carcinoma.61163	0	.	61582813	61583391	0	1	578	0
chr16	61648176	61721064	HIT000097562	0	-	61648176	61721064	0	5	1883,117,61,43,486	0,3522,33490,62551,72402
chr16	61697972	61699284	prostate_carcinoma.61175	0	.	61697972	61699284	0	1	1312	0
chr16	61841944	61842706	REMC_LuminalBreast.62784	0	.	61841944	61842706	0	1	762	0
chr16	61843065	61845419	REMC_MyoepithelialBreast.58088	0	.	61843065	61845419	0	1	2354	0
chr16	61843530	61844705	REMC_LuminalBreast.62785	0	.	61843530	61844705	0	1	1175	0
chr16	61849203	61854022	REMC_LuminalBreast.62787	0	.	61849203	61854022	0	1	4819	0
chr16	61849633	61852688	prostate_carcinoma.61181	0	-	61849633	61852688	0	4	148,209,440,763	0,642,947,2292
chr16	61850580	61851725	prostate_carcinoma.61180	0	.	61850580	61851725	0	1	1145	0
chr16	61866502	61868268	REMC_LuminalBreast.62790	0	.	61866502	61868268	0	1	1766	0
chr16	61879877	61880582	prostate_carcinoma.61186	0	.	61879877	61880582	0	1	705	0
chr16	62200716	62202724	REMC_MyoepithelialBreast.58107	0	.	62200716	62202724	0	1	2008	0
chr16	62202778	62205556	REMC_MyoepithelialBreast.58108	0	.	62202778	62205556	0	1	2778	0
chr16	62205787	62208886	REMC_MyoepithelialBreast.58109	0	.	62205787	62208886	0	1	3099	0
chr16	62205817	62206891	prostate_normal.35988	0	.	62205817	62206891	0	1	1074	0
chr16	62205817	62206569	prostate_carcinoma.61193	0	.	62205817	62206569	0	1	752	0
chr16	62208820	62210416	prostate_carcinoma.61197	0	.	62208820	62210416	0	1	1596	0
chr16	62208950	62209438	REMC_MyoepithelialBreast.58110	0	.	62208950	62209438	0	1	488	0
chr16	62208998	62209864	prostate_normal.35991	0	.	62208998	62209864	0	1	866	0
chr16	62209004	62209438	brain_AmbionMAQC.27203	0	.	62209004	62209438	0	1	434	0
chr16	62209098	62209454	A549_Myers.50571	0	.	62209098	62209454	0	1	356	0
chr16	63513393	63515120	REMC_BreastStem.31804	0	.	63513393	63515120	0	1	1727	0
chr16	63760225	63761001	H1_polyA+.71853	0	.	63760225	63761001	0	1	776	0
chr16	63798806	63802275	H1_polyA+.71855	0	.	63798806	63802275	0	1	3469	0
chr16	63818554	63819084	H9_polyA-_Chen.8880	0	.	63818554	63819084	0	1	530	0
chr16	63821891	63826367	H1_polyA+.71858	0	-	63821891	63826367	0	5	150,112,174,307,667	0,771,1043,3212,3809
chr16	63825575	63826366	H1_polyA+.71857	0	.	63825575	63826366	0	1	791	0
chr16	64412914	64418915	prostate_carcinoma.61222	0	.	64412914	64418915	0	1	6001	0
chr16	64416837	64417582	prostate_normal.35999	0	.	64416837	64417582	0	1	745	0
chr16	64458826	64462690	Rinn_00024699	0	-	64458826	64462690	0	2	34,300	0,3564
chr16	64460036	64460520	B_cells_Cheung.122410	0	.	64460036	64460520	0	1	484	0
chr16	64461128	64462742	B_cells_Cheung.122412	0	.	64461128	64462742	0	1	1614	0
chr16	64484776	64485459	B_cells_Cheung.122416	0	.	64484776	64485459	0	1	683	0
chr16	64486323	64486929	B_cells_Cheung.122417	0	.	64486323	64486929	0	1	606	0
chr16	64581359	64581793	B_cells_Cheung.122429	0	.	64581359	64581793	0	1	434	0
chr16	64817797	64818213	A549_Myers.50577	0	.	64817797	64818213	0	1	416	0
chr16	64861743	64862237	A549_Myers.50578	0	.	64861743	64862237	0	1	494	0
chr16	64883465	64884606	BT474_Burge_Thompson.20400	0	.	64883465	64884606	0	1	1141	0
chr16	64916244	64916643	A549_Myers.50579	0	.	64916244	64916643	0	1	399	0
chr16	64916925	64917283	B_Cells_Pritchard.2100121	0	.	64916925	64917283	0	1	358	0
chr16	64954547	64957153	REMC_BreastStem.31828	0	-	64954547	64957153	0	2	248,1285	0,1321
chr16	64955405	64955867	A549_Myers.50585	0	.	64955405	64955867	0	1	462	0
chr16	64955887	64956994	BT20_Thompson.13218	0	.	64955887	64956994	0	1	1107	0
chr16	64997289	64998474	BT20_Thompson.13223	0	.	64997289	64998474	0	1	1185	0
chr16	64997931	64998542	A549_Myers.50591	0	.	64997931	64998542	0	1	611	0
chr16	65085986	65086351	liver_polyA+.84656	0	.	65085986	65086351	0	1	365	0
chr16	65093542	65094340	B_cells_Cheung.122441	0	.	65093542	65094340	0	1	798	0
chr16	65093711	65094199	B_Cells_Pritchard.2100611	0	.	65093711	65094199	0	1	488	0
chr16	65093716	65094315	liver_polyA+.84660	0	.	65093716	65094315	0	1	599	0
chr16	65093728	65095879	prostate_carcinoma.61246	0	.	65093728	65095879	0	1	2151	0
chr16	65093738	65094258	brain_AmbionMAQC.27221	0	.	65093738	65094258	0	1	520	0
chr16	65093750	65094311	kidney_Gilad.54578	0	.	65093750	65094311	0	1	561	0
chr16	65094469	65094870	B_cells_Cheung.122442	0	.	65094469	65094870	0	1	401	0
chr16	65094491	65094827	B_Cells_Pritchard.2100613	0	.	65094491	65094827	0	1	336	0
chr16	65094498	65095762	brain_AmbionMAQC.27222	0	.	65094498	65095762	0	1	1264	0
chr16	65184925	65186169	REMC_MyoepithelialBreast.58141	0	.	65184925	65186169	0	1	1244	0
chr16	65192018	65193284	REMC_LuminalBreast.62824	0	.	65192018	65193284	0	1	1266	0
chr16	65192054	65193560	REMC_MyoepithelialBreast.58143	0	.	65192054	65193560	0	1	1506	0
chr16	65192264	65193314	H1_polyA+.71948	0	.	65192264	65193314	0	1	1050	0
chr16	65192963	65193448	A549_Myers.50655	0	.	65192963	65193448	0	1	485	0
chr16	65292370	65296328	REMC_MyoepithelialBreast.58172	0	.	65292370	65296328	0	1	3958	0
chr16	65294687	65295731	H1_polyA+.71901	0	.	65294687	65295731	0	1	1044	0
chr16	65296922	65298070	REMC_MyoepithelialBreast.58173	0	.	65296922	65298070	0	1	1148	0
chr16	65298258	65301148	REMC_MyoepithelialBreast.58174	0	.	65298258	65301148	0	1	2890	0
chr16	65299561	65300468	REMC_BreastStem.31903	0	.	65299561	65300468	0	1	907	0
chr16	65301530	65302331	REMC_MyoepithelialBreast.58175	0	.	65301530	65302331	0	1	801	0
chr16	65303558	65305028	H1_polyA+.71902	0	.	65303558	65305028	0	1	1470	0
chr16	65303728	65305225	REMC_BreastStem.31905	0	.	65303728	65305225	0	1	1497	0
chr16	65304108	65304488	B_cells_Cheung.122469	0	.	65304108	65304488	0	1	380	0
chr16	65305469	65307626	B_cells_Cheung.122471	0	.	65305469	65307626	0	1	2157	0
chr16	65305488	65305995	CD4_Plagnol_resting.38676	0	.	65305488	65305995	0	1	507	0
chr16	65305500	65306974	melanoma_Garraway_short_term_cultures.42485	0	.	65305500	65306974	0	1	1474	0
chr16	65305501	65310313	H1_polyA+.71903	0	.	65305501	65310313	0	1	4812	0
chr16	65308246	65309754	REMC_BreastStem.31964	0	.	65308246	65309754	0	1	1508	0
chr16	65308260	65309725	melanoma_Garraway_short_term_cultures.42487	0	.	65308260	65309725	0	1	1465	0
chr16	65308267	65309796	B_cells_Cheung.122473	0	.	65308267	65309796	0	1	1529	0
chr16	65605379	65606042	A549_Myers.50705	0	.	65605379	65606042	0	1	663	0
chr16	65617895	65619093	B_cells_Cheung.122526	0	.	65617895	65619093	0	1	1198	0
chr16	65696429	65697087	B_cells_Cheung.126277	0	.	65696429	65697087	0	1	658	0
chr16	65697326	65698047	B_cells_Cheung.126278	0	.	65697326	65698047	0	1	721	0
chr16	65697343	65697901	B_Cells_Pritchard.2107411	0	+	65697343	65697901	0	1	558	0
chr16	65796578	65798253	HIT000048843	0	+	65796578	65798253	0	1	1675	0
chr16	65865560	65866292	B_cells_Cheung.122542	0	.	65865560	65866292	0	1	732	0
chr16	65865576	65866179	HeLa_polyA+_Chen.22465	0	.	65865576	65866179	0	1	603	0
chr16	66013697	66014558	H1_polyA+.72083	0	.	66013697	66014558	0	1	861	0
chr16	66014613	66016453	H1_polyA+.72084	0	.	66014613	66016453	0	1	1840	0
chr16	66017943	66018897	B_Cells_Pritchard.2102753	0	-	66017943	66018897	0	1	954	0
chr16	66020735	66021203	H9_polyA+.27809	0	.	66020735	66021203	0	1	468	0
chr16	66077655	66079134	K562.27919	0	.	66077655	66079134	0	1	1479	0
chr16	66077737	66078253	HeLa_polyA+_Chen.22444	0	.	66077737	66078253	0	1	516	0
chr16	66077752	66079042	CD4_Plagnol_resting.38797	0	.	66077752	66079042	0	1	1290	0
chr16	66077814	66078456	CD4_Plagnol_activated.39721	0	.	66077814	66078456	0	1	642	0
chr16	66077819	66078864	brain_AmbionMAQC.27309	0	.	66077819	66078864	0	1	1045	0
chr16	66077921	66078670	prostate_normal.36104	0	.	66077921	66078670	0	1	749	0
chr16	66077932	66079031	melanoma_Garraway_short_term_cultures.42584	0	.	66077932	66079031	0	1	1099	0
chr16	66077958	66078417	BT474_Burge_Thompson.20450	0	.	66077958	66078417	0	1	459	0
chr16	66077986	66079021	MIP101.42459	0	.	66077986	66079021	0	1	1035	0
chr16	66080390	66082610	HeLa_polyA+_Chen.22446	0	.	66080390	66082610	0	1	2220	0
chr16	66082935	66083931	HeLa_polyA+_Chen.22447	0	.	66082935	66083931	0	1	996	0
chr16	66085114	66086633	HepG2_Caltech_ENCODE.22857	0	.	66085114	66086633	0	1	1519	0
chr16	66085273	66086918	HeLa_polyA+_Chen.22449	0	.	66085273	66086918	0	1	1645	0
chr16	66085538	66086776	REMC_LuminalBreast.62921	0	.	66085538	66086776	0	1	1238	0
chr16	66085889	66086589	H1_polyA+.72091	0	.	66085889	66086589	0	1	700	0
chr16	66086003	66086590	K562.27927	0	.	66086003	66086590	0	1	587	0
chr16	66086022	66086392	prostate_normal.36108	0	.	66086022	66086392	0	1	370	0
chr16	66087157	66098579	B_Cells_Pritchard.2102913	0	+	66087157	66098579	0	8	2343,23,1127,865,944,1179,541,1027	0,2773,2906,4581,6500,7741,8920,10395
chr16	66087174	66089358	REMC_LuminalBreast.62922	0	.	66087174	66089358	0	1	2184	0
chr16	66087930	66089599	HeLa_polyA+_Chen.22450	0	.	66087930	66089599	0	1	1669	0
chr16	66087948	66089308	K562.27929	0	.	66087948	66089308	0	1	1360	0
chr16	66088046	66089301	HepG2_Caltech_ENCODE.22859	0	.	66088046	66089301	0	1	1255	0
chr16	66088059	66089462	prostate_normal.36114	0	.	66088059	66089462	0	1	1403	0
chr16	66088065	66089563	MIP101.42466	0	.	66088065	66089563	0	1	1498	0
chr16	66088183	66089457	H1_polyA+.72092	0	.	66088183	66089457	0	1	1274	0
chr16	66088242	66089317	BT474_Burge_Thompson.20451	0	.	66088242	66089317	0	1	1075	0
chr16	66088626	66089564	CD4_Plagnol_activated.39725	0	.	66088626	66089564	0	1	938	0
chr16	66088708	66089564	CD4_Plagnol_resting.38805	0	.	66088708	66089564	0	1	856	0
chr16	66088784	66089312	MeWo_Garraway.22223	0	.	66088784	66089312	0	1	528	0
chr16	66090128	66091156	MIP101.42467	0	.	66090128	66091156	0	1	1028	0
chr16	66090137	66091180	HepG2_Caltech_ENCODE.22860	0	.	66090137	66091180	0	1	1043	0
chr16	66090231	66091104	brain_AmbionMAQC.27315	0	.	66090231	66091104	0	1	873	0
chr16	66090232	66091140	BT474_Burge_Thompson.20453	0	.	66090232	66091140	0	1	908	0
chr16	66090338	66091173	prostate_normal.36109	0	.	66090338	66091173	0	1	835	0
chr16	66090345	66091106	MCF7_Burge_Thompson.18934	0	.	66090345	66091106	0	1	761	0
chr16	66090351	66091114	CD4_Plagnol_resting.38806	0	.	66090351	66091114	0	1	763	0
chr16	66090391	66091199	K562.27930	0	.	66090391	66091199	0	1	808	0
chr16	66090395	66091212	HeLa_polyA+_Chen.22452	0	.	66090395	66091212	0	1	817	0
chr16	66090434	66091134	T47D_Burge_Thompson.17768	0	.	66090434	66091134	0	1	700	0
chr16	66094731	66097279	REMC_LuminalBreast.62923	0	.	66094731	66097279	0	1	2548	0
chr16	66094943	66097317	HepG2_Caltech_ENCODE.22861	0	.	66094943	66097317	0	1	2374	0
chr16	66095033	66097283	HeLa_polyA+_Chen.22457	0	.	66095033	66097283	0	1	2250	0
chr16	66096410	66097289	K562.27933	0	.	66096410	66097289	0	1	879	0
chr16	66096747	66097190	MIP101.42470	0	.	66096747	66097190	0	1	443	0
chr16	66096753	66097221	melanoma_Garraway_short_term_cultures.42590	0	.	66096753	66097221	0	1	468	0
chr16	66096766	66097295	CD4_Plagnol_resting.38812	0	.	66096766	66097295	0	1	529	0
chr16	66114001	66114716	B_cells_Cheung.123816	0	.	66114001	66114716	0	1	715	0
chr16	66114095	66114659	prostate_normal.36123	0	.	66114095	66114659	0	1	564	0
chr16	66115163	66119031	B_cells_Cheung.123818	0	.	66115163	66119031	0	1	3868	0
chr16	66116679	66118522	melanoma_Garraway_short_term_cultures.42591	0	.	66116679	66118522	0	1	1843	0
chr16	66116901	66117987	prostate_normal.36124	0	.	66116901	66117987	0	1	1086	0
chr16	66116991	66117869	prostate_carcinoma.63957	0	.	66116991	66117869	0	1	878	0
chr16	66140009	66141865	CD4_Plagnol_activated.39736	0	.	66140009	66141865	0	1	1856	0
chr16	66140280	66142218	HeLa_polyA+_Chen.22490	0	.	66140280	66142218	0	1	1938	0
chr16	66140585	66141516	H9_polyA+.27825	0	.	66140585	66141516	0	1	931	0
chr16	66140626	66141960	brain_AmbionMAQC.27337	0	.	66140626	66141960	0	1	1334	0
chr16	66140627	66141770	CD4_Plagnol_resting.38916	0	.	66140627	66141770	0	1	1143	0
chr16	66140630	66142158	HepG2_Caltech_ENCODE.22874	0	.	66140630	66142158	0	1	1528	0
chr16	66140667	66140969	liver_polyA+.84933	0	.	66140667	66140969	0	1	302	0
chr16	66141415	66141783	NEC_from_H9.46371	0	.	66141415	66141783	0	1	368	0
chr16	66142381	66148101	REMC_LuminalBreast.62928	0	.	66142381	66148101	0	1	5720	0
chr16	66146572	66147934	H1_polyA+.72200	0	.	66146572	66147934	0	1	1362	0
chr16	66150216	66151424	REMC_MyoepithelialBreast.58274	0	.	66150216	66151424	0	1	1208	0
chr16	66152798	66153713	HIT000095371	0	-	66152798	66153713	0	1	915	0
chr16	66261871	66263053	REMC_MyoepithelialBreast.58315	0	.	66261871	66263053	0	1	1182	0
chr16	66261923	66263104	B_cells_Cheung.123855	0	.	66261923	66263104	0	1	1181	0
chr16	66262053	66263380	REMC_LuminalBreast.63199	0	.	66262053	66263380	0	1	1327	0
chr16	66263342	66264613	B_cells_Cheung.123856	0	.	66263342	66264613	0	2	582,689	0,582
chr16	66264203	66264688	brain_AmbionMAQC.27354	0	.	66264203	66264688	0	1	485	0
chr16	66311787	66313052	REMC_LuminalBreast.63219	0	.	66311787	66313052	0	1	1265	0
chr16	66828886	66829745	MIP101.42611	0	.	66828886	66829745	0	1	859	0
chr16	66828894	66829671	HeLa_polyA+_Chen.22523	0	.	66828894	66829671	0	1	777	0
chr16	66828981	66831682	REMC_MyoepithelialBreast.58385	0	.	66828981	66831682	0	1	2701	0
chr16	66829033	66829661	kidney_Gilad.54924	0	.	66829033	66829661	0	1	628	0
chr16	66829158	66829665	H9_polyA+.27893	0	.	66829158	66829665	0	1	507	0
chr16	66829232	66830566	REMC_BreastStem.32076	0	.	66829232	66830566	0	1	1334	0
chr16	66829818	66830583	H1_polyA+.72288	0	.	66829818	66830583	0	1	765	0
chr16	66829844	66830796	ZR751_Thompson.15236	0	.	66829844	66830796	0	1	952	0
chr16	66829923	66836494	B_Cells_Pritchard.2107447	0	-	66829923	66836494	0	3	580,105,144	0,2725,6427
chr16	66830712	66831547	H1_polyA+.72289	0	.	66830712	66831547	0	1	835	0
chr16	66830869	66831640	liver_polyA+.85340	0	.	66830869	66831640	0	1	771	0
chr16	66831035	66831597	BT20_Thompson.13351	0	.	66831035	66831597	0	1	562	0
chr16	66831162	66831589	A549_Myers.50882	0	.	66831162	66831589	0	1	427	0
chr16	66834218	66835247	H1_polyA+.72290	0	.	66834218	66835247	0	1	1029	0
chr16	66834302	66835222	REMC_MyoepithelialBreast.58387	0	.	66834302	66835222	0	1	920	0
chr16	67044709	67045611	prostate_carcinoma.61449	0	.	67044709	67045611	0	1	902	0
chr16	67045145	67045978	H1_polyA+.72329	0	.	67045145	67045978	0	1	833	0
chr16	67045147	67045981	B_Cells_Pritchard.2104695	0	.	67045147	67045981	0	1	834	0
chr16	67061528	67062152	B_Cells_Pritchard.2104763	0	.	67061528	67062152	0	1	624	0
chr16	67083602	67085711	B_Cells_Pritchard.2104839	0	.	67083602	67085711	0	1	2109	0
chr16	67110726	67111077	A549_Myers.50920	0	.	67110726	67111077	0	1	351	0
chr16	67168132	67169670	B_cells_Cheung.122876	0	.	67168132	67169670	0	1	1538	0
chr16	67168175	67169286	MIP101.42560	0	.	67168175	67169286	0	1	1111	0
chr16	67170261	67174863	H1_polyA+.72347	0	.	67170261	67174863	0	1	4602	0
chr16	67171668	67172067	prostate_normal.36221	0	.	67171668	67172067	0	1	399	0
chr16	67174205	67174530	B_cells_Cheung.122881	0	.	67174205	67174530	0	1	325	0
chr16	67180946	67184935	H1_polyA+.72348	0	.	67180946	67184935	0	1	3989	0
chr16	67181795	67182244	A549_Myers.50931	0	.	67181795	67182244	0	1	449	0
chr16	67182546	67183604	MIP101.42564	0	.	67182546	67183604	0	1	1058	0
chr16	67182598	67183638	prostate_carcinoma.61469	0	.	67182598	67183638	0	1	1040	0
chr16	67182785	67185828	HIT000046615	0	+	67182785	67185828	0	1	3043	0
chr16	67186978	67188732	H1_polyA+.72351	0	.	67186978	67188732	0	1	1754	0
chr16	67187904	67188484	brain_AmbionMAQC.27435	0	.	67187904	67188484	0	1	580	0
chr16	67191836	67192216	prostate_carcinoma.61472	0	.	67191836	67192216	0	1	380	0
chr16	67191836	67192233	B_cells_Cheung.122889	0	.	67191836	67192233	0	1	397	0
chr16	67196003	67197915	H1_polyA+.72355	0	.	67196003	67197915	0	1	1912	0
chr16	67198836	67200260	H1_polyA+.72356	0	.	67198836	67200260	0	1	1424	0
chr16	67204024	67205809	H1_polyA+.72357	0	.	67204024	67205809	0	1	1785	0
chr16	67207833	67209387	H1_polyA+.72358	0	.	67207833	67209387	0	1	1554	0
chr16	67678237	67679032	REMC_MyoepithelialBreast.58662	0	.	67678237	67679032	0	1	795	0
chr16	67678238	67678984	H1_polyA+.73209	0	.	67678238	67678984	0	1	746	0
chr16	67678286	67678986	MIP101.44059	0	.	67678286	67678986	0	1	700	0
chr16	67678326	67678639	testes_Burge.32895	0	.	67678326	67678639	0	1	313	0
chr16	67678347	67678755	CD4_Plagnol_activated.39951	0	.	67678347	67678755	0	1	408	0
chr16	67679209	67683787	REMC_MyoepithelialBreast.58663	0	.	67679209	67683787	0	1	4578	0
chr16	67679374	67679706	H1_polyA+.73210	0	.	67679374	67679706	0	1	332	0
chr16	67679378	67679711	CD4_Plagnol_resting.39018	0	.	67679378	67679711	0	1	333	0
chr16	67679384	67679706	prostate_carcinoma.61556	0	.	67679384	67679706	0	1	322	0
chr16	67679388	67679698	liver_polyA+.85314	0	.	67679388	67679698	0	1	310	0
chr16	67679818	67680451	H1_polyA+.73211	0	.	67679818	67680451	0	1	633	0
chr16	67679900	67680482	MIP101.44060	0	.	67679900	67680482	0	1	582	0
chr16	67679919	67681241	REMC_LuminalBreast.63151	0	.	67679919	67681241	0	1	1322	0
chr16	67679968	67681821	melanoma_Garraway_short_term_cultures.42758	0	.	67679968	67681821	0	1	1853	0
chr16	67680543	67682015	H1_polyA+.73212	0	.	67680543	67682015	0	1	1472	0
chr16	67680648	67681083	brain_AmbionMAQC.27449	0	.	67680648	67681083	0	1	435	0
chr16	67681990	67683889	REMC_LuminalBreast.63152	0	.	67681990	67683889	0	1	1899	0
chr16	67688738	67689432	B_Cells_Pritchard.2107099	0	.	67688738	67689432	0	1	694	0
chr16	67691547	67694906	REMC_LuminalBreast.63153	0	.	67691547	67694906	0	1	3359	0
chr16	67693444	67694891	REMC_MyoepithelialBreast.58672	0	.	67693444	67694891	0	1	1447	0
chr16	67775091	67775740	H1_polyA+.72447	0	.	67775091	67775740	0	1	649	0
chr16	67775091	67775963	B_cells_Cheung.123102	0	.	67775091	67775963	0	1	872	0
chr16	67775862	67776962	REMC_MyoepithelialBreast.58428	0	.	67775862	67776962	0	1	1100	0
chr16	68000537	68001180	B_cells_Cheung.123117	0	.	68000537	68001180	0	1	643	0
chr16	68002891	68004086	B_Cells_Pritchard.2108065	0	.	68002891	68004086	0	1	1195	0
chr16	68003089	68003481	B_cells_Cheung.123120	0	.	68003089	68003481	0	1	392	0
chr16	68003101	68003644	prostate_carcinoma.61613	0	.	68003101	68003644	0	1	543	0
chr16	68007759	68008372	B_cells_Cheung.123123	0	.	68007759	68008372	0	1	613	0
chr16	68060633	68061588	H1_polyA+.72516	0	.	68060633	68061588	0	1	955	0
chr16	68060668	68061764	B_cells_Cheung.123131	0	.	68060668	68061764	0	1	1096	0
chr16	68070930	68071838	B_cells_Cheung.123146	0	.	68070930	68071838	0	1	908	0
chr16	68072376	68072869	B_Cells_Pritchard.2108725	0	+	68072376	68072869	0	1	493	0
chr16	68073937	68074266	A549_Myers.51058	0	.	68073937	68074266	0	1	329	0
chr16	68082196	68082925	B_cells_Cheung.123148	0	.	68082196	68082925	0	1	729	0
chr16	68129389	68129941	B_cells_Cheung.123150	0	.	68129389	68129941	0	1	552	0
chr16	68319401	68325571	REMC_LuminalBreast.63252	0	.	68319401	68325571	0	1	6170	0
chr16	68319401	68329558	REMC_LuminalBreast.63254	0	-	68319401	68329558	0	2	6103,3402	0,6755
chr16	68319825	68321266	HeLa_polyA+_Chen.22583	0	.	68319825	68321266	0	1	1441	0
chr16	68319946	68323489	REMC_BreastStem.32644	0	.	68319946	68323489	0	1	3543	0
chr16	68320847	68321464	melanoma_Garraway_short_term_cultures.42857	0	.	68320847	68321464	0	1	617	0
chr16	68320882	68321251	K562.28066	0	.	68320882	68321251	0	1	369	0
chr16	68321007	68321542	T47D_Burge_Thompson.17904	0	.	68321007	68321542	0	1	535	0
chr16	68321017	68322970	T47D_Burge_Thompson.17905	0	-	68321017	68322970	0	2	484,51	0,1902
chr16	68321021	68321490	H1_rRNA-depleted_UCSD_REMC.55531	0	.	68321021	68321490	0	1	469	0
chr16	68327581	68328106	REMC_BreastStem.32647	0	.	68327581	68328106	0	1	525	0
chr16	68331853	68332204	B_Cells_Pritchard.2109773	0	+	68331853	68332204	0	1	351	0
chr16	68347762	68349471	HIT000274955	0	-	68347762	68349471	0	1	1709	0
chr16	68347831	68348457	MeWo_Garraway.22373	0	.	68347831	68348457	0	1	626	0
chr16	68347900	68348776	K562.28162	0	.	68347900	68348776	0	1	876	0
chr16	68347914	68349053	B_cells_Cheung.123194	0	.	68347914	68349053	0	1	1139	0
chr16	68347918	68348776	REMC_BreastStem.32657	0	.	68347918	68348776	0	1	858	0
chr16	68347938	68348961	pHIT000027545	0	-	68347938	68348961	0	1	1023	0
chr16	68347948	68348458	melanoma_Garraway_short_term_cultures.42874	0	.	68347948	68348458	0	1	510	0
chr16	68347949	68350972	REMC_LuminalBreast.63263	0	.	68347949	68350972	0	1	3023	0
chr16	68347998	68348466	H1_rRNA-depleted_UCSD_REMC.55565	0	.	68347998	68348466	0	1	468	0
chr16	68348001	68348481	HeLa_polyA+_Chen.22597	0	.	68348001	68348481	0	1	480	0
chr16	68348007	68348447	HeLa_polyA-_Chen.12254	0	.	68348007	68348447	0	1	440	0
chr16	68348024	68348442	HeLa_Bartel_WT_32hr.7448	0	.	68348024	68348442	0	1	418	0
chr16	68348025	68348750	ZR751_Thompson.15185	0	.	68348025	68348750	0	1	725	0
chr16	68348026	68348455	MDAMB231_Thompson.13972	0	.	68348026	68348455	0	1	429	0
chr16	68348027	68348455	MeI_Garraway.11131	0	.	68348027	68348455	0	1	428	0
chr16	68348027	68348453	MCF7_Burge_Thompson.19142	0	.	68348027	68348453	0	1	426	0
chr16	68348027	68348456	BT20_Thompson.13362	0	.	68348027	68348456	0	1	429	0
chr16	68348027	68348455	MCF10A_Thompson.13554	0	.	68348027	68348455	0	1	428	0
chr16	68348027	68348454	brain_AmbionMAQC.27531	0	.	68348027	68348454	0	1	427	0
chr16	68348027	68348457	MDAMB468_Thompson.15036	0	.	68348027	68348457	0	1	430	0
chr16	68348027	68348454	T47D_Burge_Thompson.17910	0	.	68348027	68348454	0	1	427	0
chr16	68348032	68348453	CD4_Plagnol_resting.39190	0	.	68348032	68348453	0	1	421	0
chr16	68348032	68348451	CD4_Plagnol_activated.40090	0	-	68348032	68348451	0	2	260,96	0,323
chr16	68348032	68348451	CD4_Plagnol_activated.40089	0	.	68348032	68348451	0	1	419	0
chr16	68348034	68348348	CD4_Snyder.47983	0	.	68348034	68348348	0	1	314	0
chr16	68348039	68348730	HeLa_Bartel_WT_12hr.20721	0	-	68348039	68348730	0	2	481,62	0,629
chr16	68348042	68348442	liver_polyA+.85481	0	.	68348042	68348442	0	1	400	0
chr16	68348043	68348351	testes_Burge.32962	0	.	68348043	68348351	0	1	308	0
chr16	68348043	68348438	testes_Burge.32964	0	-	68348043	68348438	0	2	249,83	0,312
chr16	68348045	68348439	HME_Burge.25113	0	.	68348045	68348439	0	1	394	0
chr16	68348045	68348439	MB435_Burge.26383	0	-	68348045	68348439	0	2	247,84	0,310
chr16	68348045	68348353	MB435_Burge.26385	0	.	68348045	68348353	0	1	308	0
chr16	68348153	68348520	HeLa_Bartel_miR-1_32hr.8181	0	.	68348153	68348520	0	1	367	0
chr16	68348560	68349070	MeWo_Garraway.22374	0	.	68348560	68349070	0	1	510	0
chr16	68348562	68349052	melanoma_Garraway_short_term_cultures.42875	0	.	68348562	68349052	0	1	490	0
chr16	68534134	68535943	HIT000049775	0	-	68534134	68535943	0	2	687,1077	0,732
chr16	68827320	68827771	B_Cells_Pritchard.2109775	0	.	68827320	68827771	0	1	451	0
chr16	68967652	68968137	brain_AmbionMAQC.27571	0	.	68967652	68968137	0	1	485	0
chr16	68967670	68968167	B_Cells_Pritchard.2162515	0	+	68967670	68968167	0	1	497	0
chr16	68967703	68968009	A549_Myers.51117	0	.	68967703	68968009	0	1	306	0
chr16	68968620	68968967	HeLa_polyA+_Chen.22653	0	.	68968620	68968967	0	1	347	0
chr16	69988254	69989399	H1_polyA+.72856	0	.	69988254	69989399	0	1	1145	0
chr16	69993171	69994425	H1_polyA+.72859	0	.	69993171	69994425	0	1	1254	0
chr16	69993863	69995952	REMC_LuminalBreast.63500	0	.	69993863	69995952	0	1	2089	0
chr16	69996033	69996883	REMC_LuminalBreast.63501	0	.	69996033	69996883	0	1	850	0
chr16	70001246	70002399	H1_polyA+.72863	0	.	70001246	70002399	0	1	1153	0
chr16	70003405	70003998	A549_Myers.51246	0	.	70003405	70003998	0	1	593	0
chr16	70015368	70015702	H1_rRNA-depleted_UCSD_REMC.55678	0	.	70015368	70015702	0	1	334	0
chr16	70016033	70016389	A549_Myers.51248	0	.	70016033	70016389	0	1	356	0
chr16	70017160	70017885	A549_Myers.51249	0	.	70017160	70017885	0	1	725	0
chr16	70024269	70024780	Rinn_00024718	0	-	70024269	70024780	0	2	27,364	0,147
chr16	70035274	70035863	BT474_Burge_Thompson.20684	0	.	70035274	70035863	0	1	589	0
chr16	70035350	70035835	B_Cells_Pritchard.2112877	0	.	70035350	70035835	0	1	485	0
chr16	70137074	70140240	H1_polyA+.72879	0	.	70137074	70140240	0	1	3166	0
chr16	70138322	70139361	liver_polyA+.85738	0	.	70138322	70139361	0	1	1039	0
chr16	70138615	70139433	B_Cells_Pritchard.2113165	0	+	70138615	70139433	0	1	818	0
chr16	70199211	70216137	B_Cells_Pritchard.2113373	0	+	70199211	70216137	0	2	78,894	0,16032
chr16	70215115	70216254	H9_polyA+.28118	0	.	70215115	70216254	0	1	1139	0
chr16	70215132	70215926	BT20_Thompson.13429	0	.	70215132	70215926	0	1	794	0
chr16	70215145	70216249	BT474_Burge_Thompson.20697	0	.	70215145	70216249	0	1	1104	0
chr16	70215603	70216188	B_cells_Cheung.123591	0	.	70215603	70216188	0	1	585	0
chr16	70215672	70216454	REMC_MyoepithelialBreast.58749	0	.	70215672	70216454	0	1	782	0
chr16	70318370	70319396	HIT000252277	0	+	70318370	70319396	0	1	1026	0
chr16	70405016	70409726	REMC_LuminalBreast.64240	0	.	70405016	70409726	0	1	4710	0
chr16	70406968	70410799	B_cells_Cheung.123667	0	.	70406968	70410799	0	1	3831	0
chr16	70407871	70409729	REMC_MyoepithelialBreast.58859	0	.	70407871	70409729	0	1	1858	0
chr16	70408944	70409899	REMC_BreastStem.32413	0	.	70408944	70409899	0	1	955	0
chr16	70414124	70415551	REMC_BreastStem.32416	0	.	70414124	70415551	0	1	1427	0
chr16	70414617	70417364	B_cells_Cheung.123673	0	.	70414617	70417364	0	1	2747	0
chr16	70414656	70415606	REMC_MyoepithelialBreast.58863	0	.	70414656	70415606	0	1	950	0
chr16	70415662	70416753	REMC_BreastStem.32417	0	.	70415662	70416753	0	1	1091	0
chr16	70415731	70417485	REMC_MyoepithelialBreast.58864	0	.	70415731	70417485	0	1	1754	0
chr16	70417582	70422126	REMC_LuminalBreast.64244	0	.	70417582	70422126	0	1	4544	0
chr16	70417623	70420105	REMC_MyoepithelialBreast.58865	0	.	70417623	70420105	0	1	2482	0
chr16	70418707	70420693	B_cells_Cheung.123675	0	.	70418707	70420693	0	1	1986	0
chr16	70422602	70426596	REMC_MyoepithelialBreast.58868	0	.	70422602	70426596	0	1	3994	0
chr16	70422692	70426807	REMC_LuminalBreast.64245	0	.	70422692	70426807	0	1	4115	0
chr16	70423574	70426632	REMC_BreastStem.32422	0	.	70423574	70426632	0	1	3058	0
chr16	70426590	70430096	B_Cells_Pritchard.2114149	0	+	70426590	70430096	0	4	386,463,148,1550	0,390,870,1956
chr16	70426801	70430099	REMC_MyoepithelialBreast.58869	0	.	70426801	70430099	0	1	3298	0
chr16	70426929	70429405	REMC_BreastStem.32423	0	.	70426929	70429405	0	1	2476	0
chr16	70764998	70765572	B_cells_Cheung.123895	0	.	70764998	70765572	0	1	574	0
chr16	70775092	70775872	B_cells_Cheung.123896	0	.	70775092	70775872	0	1	780	0
chr16	70775465	70776411	B_Cells_Pritchard.2114439	0	.	70775465	70776411	0	1	946	0
chr16	70791719	70817088	B_cells_Cheung.123907	0	-	70791719	70817088	0	3	228,22,640	0,23642,24729
chr16	70792242	70792601	B_cells_Cheung.123909	0	.	70792242	70792601	0	1	359	0
chr16	70813546	70829910	B_Cells_Pritchard.2114591	0	-	70813546	70829910	0	3	620,1647,142	0,6691,16222
chr16	70818924	70823037	B_cells_Cheung.123924	0	.	70818924	70823037	0	1	4113	0
chr16	70820287	70822293	H1_polyA+.73242	0	.	70820287	70822293	0	1	2006	0
chr16	70824773	70827060	H1_polyA+.73243	0	.	70824773	70827060	0	1	2287	0
chr16	70833768	70834673	H1_polyA+.73244	0	.	70833768	70834673	0	1	905	0
chr16	70833796	70834816	MIP101.42992	0	.	70833796	70834816	0	1	1020	0
chr16	70833871	70840763	B_Cells_Pritchard.2114639	0	-	70833871	70840763	0	2	942,201	0,6691
chr16	70843666	70844158	melanoma_Garraway_short_term_cultures.43073	0	.	70843666	70844158	0	1	492	0
chr16	70856334	70857695	B_Cells_Pritchard.2114679	0	.	70856334	70857695	0	1	1361	0
chr16	70856618	70857700	B_cells_Cheung.123943	0	.	70856618	70857700	0	1	1082	0
chr16	70875312	70875892	B_cells_Cheung.123956	0	.	70875312	70875892	0	1	580	0
chr16	70882356	70960113	H1_polyA+.73256	0	-	70882356	70960113	0	4	457,133,833,61	0,17099,57417,77696
chr16	70890329	70890829	B_cells_Cheung.123964	0	.	70890329	70890829	0	1	500	0
chr16	70892151	70892725	B_Cells_Pritchard.2114789	0	.	70892151	70892725	0	1	574	0
chr16	70910026	70914984	H1_polyA+.73260	0	.	70910026	70914984	0	1	4958	0
chr16	70910802	70914611	HepG2_Caltech_ENCODE.23164	0	.	70910802	70914611	0	1	3809	0
chr16	70911000	70911993	B_cells_Cheung.123985	0	.	70911000	70911993	0	1	993	0
chr16	70911018	70911874	B_Cells_Pritchard.2114851	0	.	70911018	70911874	0	1	856	0
chr16	70911398	70912577	K562.28259	0	.	70911398	70912577	0	1	1179	0
chr16	70915933	70916470	B_cells_Cheung.123988	0	.	70915933	70916470	0	1	537	0
chr16	70921838	70932398	B_Cells_Pritchard.2114871	0	+	70921838	70932398	0	3	6550,1197,647	0,8032,9913
chr16	70922024	70928602	H1_polyA+.73263	0	.	70922024	70928602	0	1	6578	0
chr16	70922107	70928577	B_cells_Cheung.123990	0	.	70922107	70928577	0	1	6470	0
chr16	70923956	70924733	MCF7_Burge_Thompson.19191	0	.	70923956	70924733	0	1	777	0
chr16	70924274	70924780	A549_Myers.51344	0	.	70924274	70924780	0	1	506	0
chr16	70946625	70946998	B_Cells_Pritchard.2114917	0	+	70946625	70946998	0	1	373	0
chr16	71010371	71042769	B_Cells_Pritchard.2115119	0	+	71010371	71042769	0	14	1357,434,6321,1462,579,403,496,696,1544,798,451,288,978,4315	0,1473,2043,14229,15762,16415,17081,20577,21333,23104,24247,26517,26811,28083
chr16	71017095	71021912	brain_AmbionMAQC.27666	0	.	71017095	71021912	0	1	4817	0
chr16	71017347	71020288	HIT000011978	0	+	71017347	71020288	0	1	2941	0
chr16	71029312	71036538	H1_polyA+.72970	0	.	71029312	71036538	0	1	7226	0
chr16	71030608	71034282	B_cells_Cheung.124046	0	.	71030608	71034282	0	1	3674	0
chr16	71032162	71033166	melanoma_Garraway_short_term_cultures.43082	0	.	71032162	71033166	0	1	1004	0
chr16	71034333	71036589	B_cells_Cheung.124047	0	.	71034333	71036589	0	1	2256	0
chr16	71035149	71036574	B_Cells_Pritchard.2115171	0	+	71035149	71036574	0	1	1425	0
chr16	71036682	71045129	H1_polyA+.72971	0	.	71036682	71045129	0	1	8447	0
chr16	71036871	71042782	B_cells_Cheung.124049	0	.	71036871	71042782	0	1	5911	0
chr16	71039597	71040409	melanoma_Garraway_short_term_cultures.43083	0	.	71039597	71040409	0	1	812	0
chr16	71045233	71050842	B_cells_Cheung.124051	0	.	71045233	71050842	0	1	5609	0
chr16	71045368	71050502	B_Cells_Pritchard.2115181	0	.	71045368	71050502	0	1	5134	0
chr16	71045392	71050851	H1_polyA+.72972	0	.	71045392	71050851	0	1	5459	0
chr16	71092213	71092824	B_cells_Cheung.124091	0	.	71092213	71092824	0	1	611	0
chr16	71104769	71114171	H1_polyA+.72982	0	.	71104769	71114171	0	1	9402	0
chr16	71111530	71111929	B_Cells_Pritchard.2115489	0	.	71111530	71111929	0	1	399	0
chr16	71134621	71135321	B_Cells_Pritchard.2115571	0	+	71134621	71135321	0	1	700	0
chr16	71134756	71135077	B_cells_Cheung.124123	0	.	71134756	71135077	0	1	321	0
chr16	71179486	71195107	B_Cells_Pritchard.2115705	0	-	71179486	71195107	0	6	55,471,193,342,10,125	0,5032,6308,7126,11867,15496
chr16	71195588	71199109	B_Cells_Pritchard.2115827	0	+	71195588	71199109	0	2	203,281	0,3240
chr16	71202504	71202852	B_Cells_Pritchard.2115863	0	.	71202504	71202852	0	1	348	0
chr16	71233488	71254719	B_Cells_Pritchard.2115967	0	-	71233488	71254719	0	11	219,598,164,19,129,373,931,1137,1149,99,11	0,288,12927,13215,13393,13536,14252,15328,16654,20983,21220
chr16	71245990	71253123	B_cells_Cheung.124197	0	.	71245990	71253123	0	1	7133	0
chr16	71249022	71249747	MIP101.43116	0	.	71249022	71249747	0	1	725	0
chr16	71249121	71249747	prostate_carcinoma.62068	0	.	71249121	71249747	0	1	626	0
chr16	71266026	71271502	B_cells_Cheung.124212	0	.	71266026	71271502	0	1	5476	0
chr16	71306839	71310478	B_cells_Cheung.124222	0	.	71306839	71310478	0	1	3639	0
chr16	71319699	71322058	B_cells_Cheung.124228	0	.	71319699	71322058	0	1	2359	0
chr16	71320014	71320542	pHIT000027608	0	+	71320014	71320542	0	1	528	0
chr16	71320014	71320541	pHIT000115926	0	+	71320014	71320541	0	1	527	0
chr16	71341468	71342114	B_Cells_Pritchard.2116323	0	.	71341468	71342114	0	1	646	0
chr16	71341570	71343331	B_cells_Cheung.124232	0	.	71341570	71343331	0	1	1761	0
chr16	71345247	71349488	B_cells_Cheung.124235	0	.	71345247	71349488	0	1	4241	0
chr16	71346351	71346975	REMC_BreastStem.32306	0	.	71346351	71346975	0	1	624	0
chr16	71346410	71347047	MIP101.43130	0	.	71346410	71347047	0	1	637	0
chr16	71368714	71370594	B_Cells_Pritchard.2116411	0	.	71368714	71370594	0	1	1880	0
chr16	71369473	71370621	REMC_LuminalBreast.63545	0	.	71369473	71370621	0	1	1148	0
chr16	71655858	71656839	HepG2_Caltech_ENCODE.23202	0	.	71655858	71656839	0	1	981	0
chr16	71656324	71656779	prostate_normal.36559	0	.	71656324	71656779	0	1	455	0
chr16	71660287	71660617	A549_Myers.51389	0	.	71660287	71660617	0	1	330	0
chr16	71661957	71662261	A549_Myers.51390	0	.	71661957	71662261	0	1	304	0
chr16	71823451	71824508	HIT000049329	0	-	71823451	71824508	0	1	1057	0
chr16	71823560	71824442	brain_AmbionMAQC.27699	0	.	71823560	71824442	0	1	882	0
chr16	71824123	71824946	REMC_BreastStem.32313	0	.	71824123	71824946	0	1	823	0
chr16	71833015	71838124	REMC_BreastStem.32315	0	.	71833015	71838124	0	1	5109	0
chr16	71978452	71993895	HIT000097328	0	+	71978452	71993895	0	2	202,2357	0,13086
chr16	72362148	72366683	Rinn_00024464	0	+	72362148	72366683	0	2	186,319	0,4216
chr16	72812416	72812995	H1_polyA+.73037	0	.	72812416	72812995	0	1	579	0
chr16	72812450	72812964	A549_Myers.51402	0	.	72812450	72812964	0	1	514	0
chr16	72862490	72863144	prostate_carcinoma.62187	0	.	72862490	72863144	0	1	654	0
chr16	72874069	72884069	prostate_carcinoma.62223	0	-	72874069	72884069	0	2	805,990	0,9010
chr16	72881699	72884060	B_cells_Cheung.124378	0	.	72881699	72884060	0	1	2361	0
chr16	72882260	72884069	prostate_carcinoma.62225	0	.	72882260	72884069	0	1	1809	0
chr16	72882324	72883379	H1_polyA+.73129	0	.	72882324	72883379	0	1	1055	0
chr16	72882599	72884067	REMC_MyoepithelialBreast.58903	0	.	72882599	72884067	0	1	1468	0
chr16	72882611	72884077	MIP101.43072	0	.	72882611	72884077	0	1	1466	0
chr16	72882835	72884036	REMC_BreastStem.32317	0	.	72882835	72884036	0	1	1201	0
chr16	72882979	72884064	K562.28304	0	.	72882979	72884064	0	1	1085	0
chr16	72885325	72886356	B_cells_Cheung.124381	0	.	72885325	72886356	0	1	1031	0
chr16	72900263	72902332	HeLa_polyA+_Chen.22748	0	.	72900263	72902332	0	1	2069	0
chr16	72905293	72907517	H9_polyA+.28213	0	.	72905293	72907517	0	1	2224	0
chr16	72905302	72911037	REMC_BreastStem.32325	0	.	72905302	72911037	0	1	5735	0
chr16	72905409	72907918	HIT000045323	0	+	72905409	72907918	0	1	2509	0
chr16	72905597	72907540	brain_AmbionMAQC.27735	0	.	72905597	72907540	0	1	1943	0
chr16	72905611	72911093	B_cells_Cheung.124388	0	.	72905611	72911093	0	1	5482	0
chr16	72905637	72911107	HeLa_polyA+_Chen.22755	0	.	72905637	72911107	0	1	5470	0
chr16	72905655	72909791	CD4_Plagnol_resting.39485	0	.	72905655	72909791	0	1	4136	0
chr16	72905656	72909799	CD4_Plagnol_activated.40433	0	.	72905656	72909799	0	1	4143	0
chr16	72905660	72907416	K562.28328	0	.	72905660	72907416	0	1	1756	0
chr16	72905663	72907524	melanoma_Garraway_short_term_cultures.43128	0	.	72905663	72907524	0	1	1861	0
chr16	72905670	72907079	BT474_Burge_Thompson.20768	0	.	72905670	72907079	0	1	1409	0
chr16	72905674	72911088	BT20_Thompson.13495	0	.	72905674	72911088	0	1	5414	0
chr16	72906046	72907251	MCF7_Burge_Thompson.19229	0	.	72906046	72907251	0	1	1205	0
chr16	72906107	72907093	MDAMB468_Thompson.15138	0	.	72906107	72907093	0	1	986	0
chr16	72906116	72906790	ZR751_Thompson.15326	0	.	72906116	72906790	0	1	674	0
chr16	72906161	72917496	T47D_Burge_Thompson.18047	0	+	72906161	72917496	0	2	934,89	0,11246
chr16	72906257	72906995	MCF10A_Thompson.13633	0	.	72906257	72906995	0	1	738	0
chr16	72906266	72907069	NEC_from_H9.47009	0	.	72906266	72907069	0	1	803	0
chr16	72906290	72906776	MB435_Burge.26581	0	.	72906290	72906776	0	1	486	0
chr16	72906338	72907016	A549_Myers.51418	0	.	72906338	72907016	0	1	678	0
chr16	72906340	72907265	kidney_Gilad.55504	0	.	72906340	72907265	0	1	925	0
chr16	72906367	72907010	H1_rRNA-depleted_UCSD_REMC.55891	0	.	72906367	72907010	0	1	643	0
chr16	72907275	72908176	MCF10A_Thompson.13634	0	.	72907275	72908176	0	1	901	0
chr16	72907416	72908961	MDAMB468_Thompson.15139	0	.	72907416	72908961	0	1	1545	0
chr16	72907586	72911032	H9_polyA+.28217	0	.	72907586	72911032	0	1	3446	0
chr16	72907732	72910866	K562.28329	0	.	72907732	72910866	0	1	3134	0
chr16	72908577	72910973	kidney_Gilad.55512	0	+	72908577	72910973	0	2	1216,651	0,1745
chr16	72909902	72911025	melanoma_Garraway_short_term_cultures.43131	0	.	72909902	72911025	0	1	1123	0
chr16	72909958	72911078	CD4_Plagnol_activated.40434	0	.	72909958	72911078	0	1	1120	0
chr16	72909975	72910931	T47D_Burge_Thompson.18050	0	.	72909975	72910931	0	1	956	0
chr16	72909983	72911114	H1_rRNA-depleted_UCSD_REMC.55892	0	.	72909983	72911114	0	1	1131	0
chr16	72910130	72913191	khalil_854	0	.	72910130	72913191	0	1	3061	0
chr16	72910254	72911055	breast_Burge.25140	0	.	72910254	72911055	0	1	801	0
chr16	72910260	72911058	brain_AmbionMAQC.27727	0	.	72910260	72911058	0	1	798	0
chr16	72910401	72910933	A549_Myers.51420	0	.	72910401	72910933	0	1	532	0
chr16	72910420	72910920	MCF7_Burge_Thompson.19245	0	.	72910420	72910920	0	1	500	0
chr16	72910460	72910924	CD4_Snyder.48231	0	.	72910460	72910924	0	1	464	0
chr16	72911222	72913259	HeLa_polyA+_Chen.22754	0	.	72911222	72913259	0	1	2037	0
chr16	72911227	72915580	REMC_MyoepithelialBreast.58929	0	.	72911227	72915580	0	1	4353	0
chr16	72911227	72919712	REMC_LuminalBreast.63599	0	.	72911227	72919712	0	1	8485	0
chr16	72911253	72913237	B_cells_Cheung.124389	0	.	72911253	72913237	0	1	1984	0
chr16	72911260	72913244	H9_polyA+.28218	0	.	72911260	72913244	0	1	1984	0
chr16	72911781	72913215	CD4_Plagnol_activated.40436	0	.	72911781	72913215	0	1	1434	0
chr16	72911786	72913233	BT20_Thompson.13497	0	.	72911786	72913233	0	1	1447	0
chr16	72913353	72915584	B_cells_Cheung.124390	0	.	72913353	72915584	0	1	2231	0
chr16	72913454	72915552	HeLa_polyA+_Chen.22756	0	.	72913454	72915552	0	1	2098	0
chr16	72913505	72914759	BT20_Thompson.13498	0	.	72913505	72914759	0	1	1254	0
chr16	72915765	72919711	REMC_MyoepithelialBreast.58930	0	.	72915765	72919711	0	1	3946	0
chr16	72915777	72918941	B_cells_Cheung.124391	0	.	72915777	72918941	0	1	3164	0
chr16	72915794	72919087	HeLa_polyA+_Chen.22760	0	.	72915794	72919087	0	1	3293	0
chr16	72915858	72918525	melanoma_Garraway_short_term_cultures.43136	0	.	72915858	72918525	0	1	2667	0
chr16	72915863	72918833	BT20_Thompson.13482	0	.	72915863	72918833	0	1	2970	0
chr16	72916304	72918476	CD4_Plagnol_resting.39411	0	.	72916304	72918476	0	1	2172	0
chr16	72916443	72916749	H1_rRNA-depleted_UCSD_REMC.55894	0	.	72916443	72916749	0	1	306	0
chr16	72916468	72918493	K562.28307	0	.	72916468	72918493	0	1	2025	0
chr16	72916479	72918821	MeWo_Garraway.22514	0	.	72916479	72918821	0	1	2342	0
chr16	72916486	72918626	brain_AmbionMAQC.27702	0	.	72916486	72918626	0	1	2140	0
chr16	72916486	72917912	A549_Myers.51415	0	.	72916486	72917912	0	1	1426	0
chr16	72916499	72918340	H9_polyA+.28223	0	.	72916499	72918340	0	1	1841	0
chr16	72916518	72918514	CD4_Plagnol_activated.40415	0	.	72916518	72918514	0	1	1996	0
chr16	72916531	72918194	liver_polyA+.86002	0	.	72916531	72918194	0	1	1663	0
chr16	72916727	72918474	NEC_from_H9.47022	0	.	72916727	72918474	0	1	1747	0
chr16	72916847	72918789	REMC_BreastStem.32328	0	.	72916847	72918789	0	1	1942	0
chr16	72916866	72917653	H1_rRNA-depleted_UCSD_REMC.55895	0	.	72916866	72917653	0	1	787	0
chr16	72917092	72918246	MDAMB468_Thompson.15144	0	.	72917092	72918246	0	1	1154	0
chr16	72917214	72918820	prostate_normal.36580	0	.	72917214	72918820	0	1	1606	0
chr16	72917637	72918155	HeLa_polyA-_Chen.12328	0	.	72917637	72918155	0	1	518	0
chr16	72920758	72921173	REMC_LuminalBreast.63601	0	.	72920758	72921173	0	1	415	0
chr16	72921314	72923311	REMC_LuminalBreast.63602	0	.	72921314	72923311	0	1	1997	0
chr16	72921505	72923340	REMC_MyoepithelialBreast.58933	0	.	72921505	72923340	0	1	1835	0
chr16	72921700	72922654	B_cells_Cheung.124397	0	.	72921700	72922654	0	1	954	0
chr16	72922153	72923341	H1_polyA+.73135	0	.	72922153	72923341	0	1	1188	0
chr16	72922163	72922630	MeWo_Garraway.22515	0	.	72922163	72922630	0	1	467	0
chr16	72922167	72922651	melanoma_Garraway_short_term_cultures.43139	0	.	72922167	72922651	0	1	484	0
chr16	72922173	72922522	CD4_Plagnol_activated.40418	0	.	72922173	72922522	0	1	349	0
chr16	72922176	72922648	H9_polyA+.28227	0	.	72922176	72922648	0	1	472	0
chr16	72922238	72922667	HepG2_Caltech_ENCODE.23210	0	.	72922238	72922667	0	1	429	0
chr16	73022312	73023361	REMC_LuminalBreast.63619	0	.	73022312	73023361	0	1	1049	0
chr16	73028423	73029690	REMC_MyoepithelialBreast.58955	0	.	73028423	73029690	0	1	1267	0
chr16	73028854	73031478	B_cells_Cheung.124439	0	.	73028854	73031478	0	1	2624	0
chr16	73028877	73029564	H1_polyA+.73156	0	.	73028877	73029564	0	1	687	0
chr16	73029885	73031356	REMC_LuminalBreast.63624	0	.	73029885	73031356	0	1	1471	0
chr16	73033693	73034877	REMC_BreastStem.32339	0	.	73033693	73034877	0	1	1184	0
chr16	73033823	73034989	REMC_LuminalBreast.63626	0	.	73033823	73034989	0	1	1166	0
chr16	73033890	73034717	melanoma_Garraway_short_term_cultures.43151	0	.	73033890	73034717	0	1	827	0
chr16	73033934	73034673	K562.28322	0	.	73033934	73034673	0	1	739	0
chr16	73033942	73034694	HeLa_polyA+_Chen.22767	0	.	73033942	73034694	0	1	752	0
chr16	73034209	73034880	B_cells_Cheung.124441	0	.	73034209	73034880	0	1	671	0
chr16	73204913	73205509	B_cells_Cheung.124976	0	.	73204913	73205509	0	1	596	0
chr16	73259289	73259839	H9_polyA+.28248	0	.	73259289	73259839	0	1	550	0
chr16	73259316	73260092	MDAMB468_Thompson.15155	0	.	73259316	73260092	0	1	776	0
chr16	73259371	73259689	testes_Burge.33257	0	.	73259371	73259689	0	1	318	0
chr16	73259475	73259853	BT474_Burge_Thompson.20751	0	.	73259475	73259853	0	1	378	0
chr16	73259481	73259852	CD4_Plagnol_activated.40466	0	.	73259481	73259852	0	1	371	0
chr16	73259525	73259857	MDAMB231_Thompson.14093	0	.	73259525	73259857	0	1	332	0
chr16	73259537	73259853	CD4_Snyder.48284	0	.	73259537	73259853	0	1	316	0
chr16	73259548	73259856	ZR751_Thompson.15333	0	.	73259548	73259856	0	1	308	0
chr16	73378429	73379685	MeWo_Garraway.22553	0	.	73378429	73379685	0	1	1256	0
chr16	73378482	73384237	H1_polyA+.73279	0	.	73378482	73384237	0	1	5755	0
chr16	73378580	73379165	B_Cells_Pritchard.2121241	0	.	73378580	73379165	0	1	585	0
chr16	73382381	73383711	MeWo_Garraway.22539	0	.	73382381	73383711	0	1	1330	0
chr16	73384747	73385573	MeWo_Garraway.22555	0	.	73384747	73385573	0	1	826	0
chr16	73386155	73390173	H1_polyA+.73281	0	.	73386155	73390173	0	1	4018	0
chr16	73726382	73728173	kidney_Gilad.55626	0	-	73726382	73728173	0	2	763,80	0,1711
chr16	73726382	73728857	liver_polyA+.86150	0	-	73726382	73728857	0	2	763,764	0,1711
chr16	73765989	73767252	REMC_LuminalBreast.63732	0	.	73765989	73767252	0	1	1263	0
chr16	73766146	73767200	H1_polyA+.73373	0	.	73766146	73767200	0	1	1054	0
chr16	73766158	73767131	B_cells_Cheung.124595	0	.	73766158	73767131	0	1	973	0
chr16	73766162	73767298	B_Cells_Pritchard.2122143	0	.	73766162	73767298	0	1	1136	0
chr16	73766205	73767024	MCF7_Burge_Thompson.19293	0	.	73766205	73767024	0	1	819	0
chr16	73767603	73771089	REMC_LuminalBreast.63733	0	.	73767603	73771089	0	1	3486	0
chr16	73767746	73768495	REMC_MyoepithelialBreast.59042	0	.	73767746	73768495	0	1	749	0
chr16	73767821	73768652	B_Cells_Pritchard.2122149	0	.	73767821	73768652	0	1	831	0
chr16	73770079	73771097	REMC_MyoepithelialBreast.59044	0	.	73770079	73771097	0	1	1018	0
chr16	73777380	73778482	REMC_LuminalBreast.63737	0	.	73777380	73778482	0	1	1102	0
chr16	73777406	73779151	REMC_MyoepithelialBreast.59048	0	.	73777406	73779151	0	1	1745	0
chr16	73782822	73783238	B_Cells_Pritchard.2122211	0	.	73782822	73783238	0	1	416	0
chr16	73787640	73788665	REMC_MyoepithelialBreast.59035	0	.	73787640	73788665	0	1	1025	0
chr16	73801085	73802015	melanoma_Garraway_short_term_cultures.43190	0	.	73801085	73802015	0	1	930	0
chr16	73804680	73805280	B_Cells_Pritchard.2122297	0	.	73804680	73805280	0	1	600	0
chr16	73805310	73806492	REMC_LuminalBreast.63744	0	.	73805310	73806492	0	1	1182	0
chr16	73817472	73819594	ENST00000489723	0	+	73817472	73819594	0	4	652,178,216,206	0,746,1017,1916
chr16	73817554	73817885	A549_Myers.51514	0	.	73817554	73817885	0	1	331	0
chr16	73817739	73819514	ENST00000463353	0	+	73817739	73819514	0	4	52,79,81,126	0,306,807,1649
chr16	73817874	73818960	prostate_carcinoma.62314	0	.	73817874	73818960	0	1	1086	0
chr16	73817915	73818705	ENST00000498687	0	+	73817915	73818705	0	2	481,216	0,574
chr16	73818102	73818787	A549_Myers.51515	0	.	73818102	73818787	0	1	685	0
chr16	73818554	73818858	brain_AmbionMAQC.27747	0	.	73818554	73818858	0	1	304	0
chr16	73818884	73819358	B_Cells_Pritchard.2122665	0	+	73818884	73819358	0	1	474	0
chr16	73860651	73861435	B_Cells_Pritchard.2122527	0	.	73860651	73861435	0	1	784	0
chr16	73862979	73864114	REMC_MyoepithelialBreast.59052	0	.	73862979	73864114	0	1	1135	0
chr16	73863618	73864073	B_Cells_Pritchard.2122537	0	.	73863618	73864073	0	1	455	0
chr16	73863677	73864307	REMC_LuminalBreast.63756	0	.	73863677	73864307	0	1	630	0
chr16	73864165	73865427	REMC_MyoepithelialBreast.59053	0	.	73864165	73865427	0	1	1262	0
chr16	73869490	73874744	REMC_LuminalBreast.63759	0	.	73869490	73874744	0	1	5254	0
chr16	73873324	73874598	melanoma_Garraway_short_term_cultures.43208	0	.	73873324	73874598	0	1	1274	0
chr16	73873533	73874470	REMC_MyoepithelialBreast.59057	0	.	73873533	73874470	0	1	937	0
chr16	73873552	73874378	B_Cells_Pritchard.2122575	0	.	73873552	73874378	0	1	826	0
chr16	73873640	73874471	H1_polyA+.73417	0	.	73873640	73874471	0	1	831	0
chr16	73873805	73874214	B_cells_Cheung.124615	0	.	73873805	73874214	0	1	409	0
chr16	73873821	73874752	REMC_BreastStem.32375	0	.	73873821	73874752	0	1	931	0
chr16	74025234	74027791	HIT000012644	0	+	74025234	74027791	0	1	2557	0
chr16	74025910	74026508	REMC_MyoepithelialBreast.59062	0	.	74025910	74026508	0	1	598	0
chr16	74026436	74027740	REMC_LuminalBreast.63766	0	.	74026436	74027740	0	1	1304	0
chr16	74026539	74028506	HepG2_Caltech_ENCODE.23293	0	.	74026539	74028506	0	1	1967	0
chr16	74026575	74027825	BT20_Thompson.13521	0	.	74026575	74027825	0	1	1250	0
chr16	74026584	74027553	K562.28372	0	.	74026584	74027553	0	1	969	0
chr16	74026590	74027623	BT474_Burge_Thompson.20793	0	.	74026590	74027623	0	1	1033	0
chr16	74026596	74027797	T47D_Burge_Thompson.18096	0	.	74026596	74027797	0	1	1201	0
chr16	74026605	74027436	liver_polyA+.86244	0	.	74026605	74027436	0	1	831	0
chr16	74026671	74027565	brain_AmbionMAQC.27756	0	.	74026671	74027565	0	1	894	0
chr16	74026673	74027787	MIP101.43247	0	.	74026673	74027787	0	1	1114	0
chr16	74026695	74027179	H1_rRNA-depleted_UCSD_REMC.56033	0	.	74026695	74027179	0	1	484	0
chr16	74026702	74027465	REMC_MyoepithelialBreast.59063	0	.	74026702	74027465	0	1	763	0
chr16	74026713	74027236	HeLa_polyA+_Chen.22805	0	.	74026713	74027236	0	1	523	0
chr16	74026902	74027359	CD4_Plagnol_activated.40516	0	.	74026902	74027359	0	1	457	0
chr16	74027024	74027689	MCF7_Burge_Thompson.19324	0	.	74027024	74027689	0	1	665	0
chr16	74027027	74027608	CD4_Plagnol_resting.39505	0	.	74027027	74027608	0	1	581	0
chr16	74173668	74174430	B_cells_Cheung.124769	0	.	74173668	74174430	0	1	762	0
chr16	74173684	74177592	REMC_LuminalBreast.63800	0	.	74173684	74177592	0	1	3908	0
chr16	74173840	74174956	H1_polyA+.73439	0	.	74173840	74174956	0	1	1116	0
chr16	74173866	74174302	MIP101.43713	0	.	74173866	74174302	0	1	436	0
chr16	74176218	74176597	spleen_Raymond.128975	0	.	74176218	74176597	0	1	379	0
chr16	74176226	74176574	H1_rRNA-depleted_UCSD_REMC.56067	0	.	74176226	74176574	0	1	348	0
chr16	74176235	74176539	testes_Burge.33315	0	.	74176235	74176539	0	1	304	0
chr16	74176262	74176967	HeLa_polyA+_Chen.22819	0	.	74176262	74176967	0	1	705	0
chr16	74177618	74182738	HIT000056844	0	-	74177618	74182738	0	1	5120	0
chr16	74177787	74183184	REMC_LuminalBreast.63801	0	.	74177787	74183184	0	1	5397	0
chr16	74177828	74183223	B_cells_Cheung.124771	0	.	74177828	74183223	0	1	5395	0
chr16	74177831	74183252	H1_polyA+.73441	0	.	74177831	74183252	0	1	5421	0
chr16	74177946	74179430	REMC_BreastStem.32392	0	.	74177946	74179430	0	1	1484	0
chr16	74178375	74178884	H9_polyA+.28308	0	.	74178375	74178884	0	1	509	0
chr16	74250197	74250848	H1_polyA+.73452	0	.	74250197	74250848	0	1	651	0
chr16	74252200	74252564	B_Cells_Pritchard.2123687	0	+	74252200	74252564	0	1	364	0
chr16	74269656	74276899	B_cells_Cheung.126101	0	.	74269656	74276899	0	1	7243	0
chr16	74273750	74274216	MCF7_Burge_Thompson.19338	0	.	74273750	74274216	0	1	466	0
chr16	74304258	74304880	B_cells_Cheung.126115	0	.	74304258	74304880	0	1	622	0
chr16	74305622	74317841	pHIT000027674	0	-	74305622	74317841	0	3	999,194,25	0,4041,12194
chr16	74306458	74307689	B_cells_Cheung.126117	0	.	74306458	74307689	0	1	1231	0
chr16	74324719	74325444	B_cells_Cheung.126123	0	.	74324719	74325444	0	1	725	0
chr16	74324746	74325720	B_Cells_Pritchard.2123797	0	.	74324746	74325720	0	1	974	0
chr16	74351318	74353817	B_Cells_Pritchard.2123935	0	+	74351318	74353817	0	2	221,1586	0,913
chr16	74351373	74351829	prostate_carcinoma.62426	0	.	74351373	74351829	0	1	456	0
chr16	74351426	74353250	Rinn_00024468	0	+	74351426	74353250	0	2	113,1020	0,804
chr16	74351450	74353685	B_cells_Cheung.126127	0	+	74351450	74353685	0	2	89,1454	0,781
chr16	74352125	74353309	REMC_BreastStem.32455	0	.	74352125	74353309	0	1	1184	0
chr16	74352228	74353434	H1_polyA+.73472	0	.	74352228	74353434	0	1	1206	0
chr16	74352228	74353277	REMC_MyoepithelialBreast.59107	0	.	74352228	74353277	0	1	1049	0
chr16	74352233	74353116	HepG2_Caltech_ENCODE.23320	0	.	74352233	74353116	0	1	883	0
chr16	74352457	74353442	prostate_carcinoma.62427	0	.	74352457	74353442	0	1	985	0
chr16	74352459	74353234	MIP101.43282	0	.	74352459	74353234	0	1	775	0
chr16	74352488	74352961	prostate_normal.36704	0	.	74352488	74352961	0	1	473	0
chr16	74368613	74369335	REMC_BreastStem.32428	0	.	74368613	74369335	0	1	722	0
chr16	74368999	74369318	B_cells_Cheung.124824	0	.	74368999	74369318	0	1	319	0
chr16	74390044	74390965	B_Cells_Pritchard.2124067	0	.	74390044	74390965	0	1	921	0
chr16	75184657	75184959	B_cells_Cheung.124866	0	.	75184657	75184959	0	1	302	0
chr16	75451872	75452700	B_cells_Cheung.124894	0	.	75451872	75452700	0	1	828	0
chr16	75469800	75470401	B_cells_Cheung.124897	0	.	75469800	75470401	0	1	601	0
chr16	75472931	75473584	B_cells_Cheung.124900	0	.	75472931	75473584	0	1	653	0
chr16	75675807	75742607	HIT000049210	0	-	75675807	75742607	0	3	59,433,1222	0,65015,65578
chr16	75781619	75781964	pHIT000027676	0	-	75781619	75781964	0	1	345	0
chr16	78200538	78203254	prostate_carcinoma.62648	0	.	78200538	78203254	0	1	2716	0
chr16	78201037	78201480	prostate_normal.36792	0	.	78201037	78201480	0	1	443	0
chr16	78244157	78248285	prostate_carcinoma.62649	0	.	78244157	78248285	0	1	4128	0
chr16	78245081	78245975	prostate_normal.36793	0	.	78245081	78245975	0	1	894	0
chr16	78249417	78250537	prostate_carcinoma.62650	0	.	78249417	78250537	0	1	1120	0
chr16	78306139	78362328	Rinn_00024736	0	-	78306139	78362328	0	5	2099,148,64,71,485	0,6732,36471,54410,55704
chr16	78306755	78349116	Rinn_00025059	0	-	78306755	78349116	0	4	1483,148,64,69	0,6116,35855,42292
chr16	78313505	78314533	prostate_normal.36795	0	.	78313505	78314533	0	1	1028	0
chr16	78313778	78315315	prostate_carcinoma.62661	0	.	78313778	78315315	0	1	1537	0
chr16	78313778	78323400	prostate_carcinoma.62662	0	-	78313778	78323400	0	2	733,10	0,9612
chr16	78314761	78315790	liver_polyA+.86701	0	.	78314761	78315790	0	1	1029	0
chr16	78315389	78315735	B_cells_Cheung.125478	0	.	78315389	78315735	0	1	346	0
chr16	78359854	78361286	prostate_carcinoma.62664	0	.	78359854	78361286	0	1	1432	0
chr16	78361442	78361772	testes_Burge.33373	0	.	78361442	78361772	0	1	330	0
chr16	78392679	78394266	prostate_carcinoma.62672	0	.	78392679	78394266	0	1	1587	0
chr16	78432966	78437542	K562.28454	0	.	78432966	78437542	0	1	4576	0
chr16	78433761	78437408	B_cells_Cheung.125483	0	.	78433761	78437408	0	1	3647	0
chr16	78435678	78436887	B_Cells_Pritchard.2134945	0	.	78435678	78436887	0	1	1209	0
chr16	78461745	78462291	A549_Myers.51592	0	.	78461745	78462291	0	1	546	0
chr16	79068931	79070178	prostate_carcinoma.62675	0	.	79068931	79070178	0	1	1247	0
chr16	79104779	79105147	B_cells_Cheung.125494	0	.	79104779	79105147	0	1	368	0
chr16	79145280	79146292	prostate_carcinoma.62683	0	.	79145280	79146292	0	1	1012	0
chr16	79154677	79154987	B_cells_Cheung.125499	0	.	79154677	79154987	0	1	310	0
chr16	79168583	79170287	B_cells_Cheung.125505	0	.	79168583	79170287	0	1	1704	0
chr16	79178205	79179392	prostate_carcinoma.62692	0	.	79178205	79179392	0	1	1187	0
chr16	79179979	79180482	brain_AmbionMAQC.27847	0	.	79179979	79180482	0	1	503	0
chr16	79182274	79184544	prostate_carcinoma.62687	0	.	79182274	79184544	0	1	2270	0
chr16	79182318	79183041	BT20_Thompson.13566	0	.	79182318	79183041	0	1	723	0
chr16	79182321	79183322	B_Cells_Pritchard.2136551	0	.	79182321	79183322	0	1	1001	0
chr16	79182331	79184469	HeLa_polyA+_Chen.22847	0	.	79182331	79184469	0	1	2138	0
chr16	79182607	79184096	brain_AmbionMAQC.27849	0	.	79182607	79184096	0	1	1489	0
chr16	79185112	79186691	B_cells_Cheung.125514	0	.	79185112	79186691	0	1	1579	0
chr16	79185146	79189135	BT20_Thompson.13567	0	.	79185146	79189135	0	1	3989	0
chr16	79185190	79186044	brain_AmbionMAQC.27848	0	.	79185190	79186044	0	1	854	0
chr16	79185250	79186445	B_Cells_Pritchard.2136559	0	.	79185250	79186445	0	1	1195	0
chr16	79185386	79189101	prostate_carcinoma.62688	0	.	79185386	79189101	0	1	3715	0
chr16	79187519	79188062	brain_AmbionMAQC.27850	0	.	79187519	79188062	0	1	543	0
chr16	79187563	79189076	B_cells_Cheung.125516	0	.	79187563	79189076	0	1	1513	0
chr16	79187571	79188693	prostate_normal.36844	0	.	79187571	79188693	0	1	1122	0
chr16	79187961	79188501	B_Cells_Pritchard.2136569	0	.	79187961	79188501	0	1	540	0
chr16	79187982	79189011	MIP101.43448	0	.	79187982	79189011	0	1	1029	0
chr16	79188100	79189107	BT474_Burge_Thompson.20881	0	.	79188100	79189107	0	1	1007	0
chr16	79189182	79191696	CD4_Plagnol_resting.39598	0	.	79189182	79191696	0	1	2514	0
chr16	79189204	79191993	BT20_Thompson.13569	0	.	79189204	79191993	0	1	2789	0
chr16	79189253	79191601	HeLa_polyA-_Chen.12377	0	.	79189253	79191601	0	1	2348	0
chr16	79189254	79191689	CD4_Plagnol_activated.40595	0	.	79189254	79191689	0	1	2435	0
chr16	79189301	79191601	brain_AmbionMAQC.27851	0	.	79189301	79191601	0	1	2300	0
chr16	79189302	79191842	T47D_Burge_Thompson.18135	0	.	79189302	79191842	0	1	2540	0
chr16	79189302	79191608	B_Cells_Pritchard.2136575	0	.	79189302	79191608	0	1	2306	0
chr16	79189310	79191853	REMC_MyoepithelialBreast.59439	0	.	79189310	79191853	0	1	2543	0
chr16	79189327	79191706	MDAMB231_Thompson.14153	0	.	79189327	79191706	0	1	2379	0
chr16	79190037	79191651	NEC_from_H9.47230	0	.	79190037	79191651	0	1	1614	0
chr16	79190930	79191636	CD4_Snyder.48400	0	.	79190930	79191636	0	1	706	0
chr16	79419847	79423432	prostate_carcinoma.62765	0	.	79419847	79423432	0	1	3585	0
chr16	79419858	79427048	prostate_carcinoma.62766	0	+	79419858	79427048	0	2	3471,3361	0,3829
chr16	79420137	79423416	prostate_normal.36825	0	.	79420137	79423416	0	1	3279	0
chr16	79420140	79483994	HIT000017869	0	+	79420140	79483994	0	3	2015,104,92	0,11376,63762
chr16	79420151	79422264	MDAMB468_Thompson.15209	0	.	79420151	79422264	0	1	2113	0
chr16	79420169	79421248	MDAMB231_Thompson.14151	0	.	79420169	79421248	0	1	1079	0
chr16	79420320	79422167	MIP101.43452	0	.	79420320	79422167	0	1	1847	0
chr16	79423705	79425242	prostate_normal.36826	0	.	79423705	79425242	0	1	1537	0
chr16	79437297	79438235	HeLa_polyA+_Chen.22855	0	.	79437297	79438235	0	1	938	0
chr16	79437583	79438050	HeLa_polyA-_Chen.12385	0	.	79437583	79438050	0	1	467	0
chr16	79443975	79444967	prostate_carcinoma.62783	0	.	79443975	79444967	0	1	992	0
chr16	79488990	79489450	B_Cells_Pritchard.2137321	0	.	79488990	79489450	0	1	460	0
chr16	79523029	79524658	prostate_carcinoma.62752	0	.	79523029	79524658	0	1	1629	0
chr16	79523104	79523546	HeLa_polyA+_Chen.22905	0	.	79523104	79523546	0	1	442	0
chr16	79523107	79524469	prostate_normal.36835	0	.	79523107	79524469	0	1	1362	0
chr16	79523388	79523729	A549_Myers.51600	0	.	79523388	79523729	0	1	341	0
chr16	79523593	79524290	HeLa_polyA-_Chen.12386	0	.	79523593	79524290	0	1	697	0
chr16	79523796	79524126	A549_Myers.51601	0	.	79523796	79524126	0	1	330	0
chr16	79545982	79546362	B_Cells_Pritchard.2137545	0	.	79545982	79546362	0	1	380	0
chr16	79546330	79546666	A549_Myers.51602	0	.	79546330	79546666	0	1	336	0
chr16	79559023	79559923	prostate_carcinoma.62762	0	.	79559023	79559923	0	1	900	0
chr16	79559024	79561028	MIP101.43454	0	.	79559024	79561028	0	1	2004	0
chr16	79559039	79560037	REMC_MyoepithelialBreast.59445	0	.	79559039	79560037	0	1	998	0
chr16	79559416	79561087	REMC_LuminalBreast.64022	0	.	79559416	79561087	0	1	1671	0
chr16	79559463	79559987	B_cells_Cheung.125583	0	.	79559463	79559987	0	1	524	0
chr16	79559479	79560251	H1_polyA+.73952	0	.	79559479	79560251	0	1	772	0
chr16	79563070	79564602	REMC_MyoepithelialBreast.59448	0	.	79563070	79564602	0	1	1532	0
chr16	79563171	79564513	REMC_BreastStem.32470	0	.	79563171	79564513	0	1	1342	0
chr16	79563895	79564562	prostate_normal.36840	0	.	79563895	79564562	0	1	667	0
chr16	79563977	79564544	K562.28457	0	.	79563977	79564544	0	1	567	0
chr16	79641972	79643382	REMC_MyoepithelialBreast.59467	0	.	79641972	79643382	0	1	1410	0
chr16	79642612	79642978	B_cells_Cheung.125607	0	.	79642612	79642978	0	1	366	0
chr16	79670864	79671485	REMC_MyoepithelialBreast.59463	0	.	79670864	79671485	0	1	621	0
chr16	79671094	79671909	B_cells_Cheung.125635	0	.	79671094	79671909	0	1	815	0
chr16	79890693	79891942	B_Cells_Pritchard.2138481	0	.	79890693	79891942	0	1	1249	0
chr16	79890723	79891187	B_cells_Cheung.125672	0	.	79890723	79891187	0	1	464	0
chr16	79893569	79894628	MIP101.43492	0	.	79893569	79894628	0	1	1059	0
chr16	79904451	79905012	H1_rRNA-depleted_UCSD_REMC.56183	0	.	79904451	79905012	0	1	561	0
chr16	79904520	79904957	CD4_Plagnol_resting.39626	0	.	79904520	79904957	0	1	437	0
chr16	79904531	79904896	A549_Myers.51677	0	.	79904531	79904896	0	1	365	0
chr16	79974442	79978675	B_cells_Cheung.125728	0	.	79974442	79978675	0	1	4233	0
chr16	79974467	79978672	BT20_Thompson.13585	0	.	79974467	79978672	0	1	4205	0
chr16	79975614	79982102	REMC_LuminalBreast.64064	0	.	79975614	79982102	0	1	6488	0
chr16	79976380	79978923	HIT000023269	0	-	79976380	79978923	0	1	2543	0
chr16	79976829	79977226	H1_rRNA-depleted_UCSD_REMC.56203	0	.	79976829	79977226	0	1	397	0
chr16	79977008	79978666	K562.28486	0	.	79977008	79978666	0	1	1658	0
chr16	79977643	79978260	H1_rRNA-depleted_UCSD_REMC.56215	0	.	79977643	79978260	0	1	617	0
chr16	79977654	79978150	IMR90_UCSD_REMC.31968	0	-	79977654	79978150	0	1	496	0
chr16	79977942	79981963	REMC_BreastStem.32489	0	.	79977942	79981963	0	1	4021	0
chr16	79977950	79981912	HepG2_Caltech_ENCODE.23386	0	.	79977950	79981912	0	1	3962	0
chr16	79977958	79981950	H9_polyA+.28403	0	.	79977958	79981950	0	1	3992	0
chr16	79977959	79982004	HeLa_polyA+_Chen.22928	0	.	79977959	79982004	0	1	4045	0
chr16	79977978	79981968	ZR751_Thompson.15417	0	.	79977978	79981968	0	1	3990	0
chr16	79977980	79981914	BT474_Burge_Thompson.20868	0	.	79977980	79981914	0	1	3934	0
chr16	79978942	79981118	liver_polyA+.86793	0	-	79978942	79981118	0	2	239,685	0,1491
chr16	79979522	79979885	HeLa_polyA-_Chen.12416	0	.	79979522	79979885	0	1	363	0
chr16	79985170	79989083	REMC_MyoepithelialBreast.59494	0	.	79985170	79989083	0	1	3913	0
chr16	79985231	79986533	REMC_BreastStem.32487	0	.	79985231	79986533	0	1	1302	0
chr16	79987070	79989787	REMC_LuminalBreast.64072	0	.	79987070	79989787	0	1	2717	0
chr16	79989190	79993163	REMC_MyoepithelialBreast.59495	0	.	79989190	79993163	0	1	3973	0
chr16	79991846	79993180	REMC_LuminalBreast.64074	0	.	79991846	79993180	0	1	1334	0
chr16	79997720	79999125	REMC_MyoepithelialBreast.59476	0	.	79997720	79999125	0	1	1405	0
chr16	79997741	80000397	REMC_LuminalBreast.64078	0	.	79997741	80000397	0	1	2656	0
chr16	79999464	80000659	REMC_MyoepithelialBreast.59477	0	.	79999464	80000659	0	1	1195	0
chr16	80000115	80000652	A549_Myers.51698	0	.	80000115	80000652	0	1	537	0
chr16	80004032	80004939	REMC_LuminalBreast.64079	0	.	80004032	80004939	0	1	907	0
chr16	80020192	80020631	A549_Myers.51700	0	.	80020192	80020631	0	1	439	0
chr16	80022373	80024800	REMC_MyoepithelialBreast.59481	0	.	80022373	80024800	0	1	2427	0
chr16	80023341	80024775	REMC_LuminalBreast.64081	0	.	80023341	80024775	0	1	1434	0
chr16	80032715	80034058	REMC_MyoepithelialBreast.59482	0	.	80032715	80034058	0	1	1343	0
chr16	80033300	80034533	REMC_LuminalBreast.64082	0	.	80033300	80034533	0	1	1233	0
chr16	80304337	80304943	B_cells_Cheung.125733	0	.	80304337	80304943	0	1	606	0
chr16	80304533	80305086	A549_Myers.51795	0	.	80304533	80305086	0	1	553	0
chr16	80320189	80320997	B_Cells_Pritchard.2139413	0	.	80320189	80320997	0	1	808	0
chr16	80320370	80320962	REMC_BreastStem.32507	0	.	80320370	80320962	0	1	592	0
chr16	80321075	80322386	H1_polyA+.73990	0	.	80321075	80322386	0	1	1311	0
chr16	80321239	80321957	A549_Myers.51797	0	.	80321239	80321957	0	1	718	0
chr16	80321316	80321898	B_Cells_Pritchard.2139417	0	.	80321316	80321898	0	1	582	0
chr16	80321459	80321942	ZR751_Thompson.15406	0	.	80321459	80321942	0	1	483	0
chr16	80322868	80325862	H1_polyA+.73991	0	.	80322868	80325862	0	1	2994	0
chr16	80326012	80327631	H1_polyA+.73992	0	.	80326012	80327631	0	1	1619	0
chr16	80555199	80556310	B_Cells_Pritchard.2139735	0	-	80555199	80556310	0	1	1111	0
chr16	80556664	80557485	REMC_MyoepithelialBreast.59504	0	.	80556664	80557485	0	1	821	0
chr16	80556845	80557987	REMC_LuminalBreast.64179	0	.	80556845	80557987	0	1	1142	0
chr16	80558328	80560144	REMC_MyoepithelialBreast.59505	0	.	80558328	80560144	0	1	1816	0
chr16	80564397	80567549	B_Cells_Pritchard.2139761	0	-	80564397	80567549	0	2	1410,358	0,2794
chr16	80573567	80575135	REMC_MyoepithelialBreast.59510	0	.	80573567	80575135	0	1	1568	0
chr16	80581012	80583195	B_cells_Cheung.125797	0	.	80581012	80583195	0	1	2183	0
chr16	80581064	80583179	B_Cells_Pritchard.2139803	0	-	80581064	80583179	0	2	932,1183	0,932
chr16	80581075	80582004	CD4_Plagnol_activated.40653	0	.	80581075	80582004	0	1	929	0
chr16	80581076	80582325	MCF10A_Thompson.13718	0	.	80581076	80582325	0	1	1249	0
chr16	80581079	80583123	prostate_carcinoma.62942	0	.	80581079	80583123	0	1	2044	0
chr16	80581242	80582915	ZR751_Thompson.15421	0	.	80581242	80582915	0	1	1673	0
chr16	80581242	80582556	prostate_normal.36915	0	.	80581242	80582556	0	1	1314	0
chr16	80581451	80582488	CD4_Plagnol_resting.39656	0	.	80581451	80582488	0	1	1037	0
chr16	80583763	80586931	prostate_normal.36918	0	.	80583763	80586931	0	1	3168	0
chr16	80584106	80584778	CD4_Plagnol_resting.39657	0	.	80584106	80584778	0	1	672	0
chr16	80693124	80694976	H1_polyA+.74009	0	.	80693124	80694976	0	1	1852	0
chr16	80693453	80694493	REMC_LuminalBreast.64191	0	.	80693453	80694493	0	1	1040	0
chr16	80706237	80707157	REMC_LuminalBreast.64193	0	.	80706237	80707157	0	1	920	0
chr16	80714006	80714985	H1_polyA+.74014	0	.	80714006	80714985	0	1	979	0
chr16	80723892	80730547	REMC_MyoepithelialBreast.59518	0	.	80723892	80730547	0	1	6655	0
chr16	80727329	80730410	REMC_LuminalBreast.64198	0	.	80727329	80730410	0	1	3081	0
chr16	80727528	80728895	brain_AmbionMAQC.27908	0	.	80727528	80728895	0	1	1367	0
chr16	80727630	80730370	MIP101.43562	0	.	80727630	80730370	0	1	2740	0
chr16	80729079	80729850	ZR751_Thompson.15428	0	.	80729079	80729850	0	1	771	0
chr16	80736506	80737621	MIP101.43564	0	.	80736506	80737621	0	1	1115	0
chr16	80811399	80812118	MCF7_Burge_Thompson.19451	0	.	80811399	80812118	0	1	719	0
chr16	80811427	80812095	BT474_Burge_Thompson.20878	0	.	80811427	80812095	0	1	668	0
chr16	80811429	80812153	B_Cells_Pritchard.2140315	0	.	80811429	80812153	0	1	724	0
chr16	80811469	80812105	prostate_carcinoma.62965	0	.	80811469	80812105	0	1	636	0
chr16	80811756	80812074	prostate_normal.36933	0	.	80811756	80812074	0	1	318	0
chr16	81003828	81004179	A549_Myers.51835	0	.	81003828	81004179	0	1	351	0
chr16	81091164	81112644	pHIT000027715	0	+	81091164	81112644	0	2	120,374	0,21106
chr16	82636418	82636849	A549_Myers.51890	0	.	82636418	82636849	0	1	431	0
chr16	82637208	82637635	B_Cells_Pritchard.2144757	0	.	82637208	82637635	0	1	427	0
chr16	82637216	82637675	CD4_Plagnol_resting.39688	0	.	82637216	82637675	0	1	459	0
chr16	82637219	82637618	CD4_Plagnol_activated.40688	0	.	82637219	82637618	0	1	399	0
chr16	82639783	82641736	B_Cells_Pritchard.2144761	0	.	82639783	82641736	0	1	1953	0
chr16	82640622	82641297	B_cells_Cheung.125837	0	.	82640622	82641297	0	1	675	0
chr16	82641364	82641678	B_cells_Cheung.125838	0	.	82641364	82641678	0	1	314	0
chr16	82708156	82708688	HIT000099516	0	+	82708156	82708688	0	1	532	0
chr16	82791163	82791486	A549_Myers.51937	0	.	82791163	82791486	0	1	323	0
chr16	82870210	82870581	A549_Myers.51947	0	.	82870210	82870581	0	1	371	0
chr16	82870231	82870792	H1_polyA+.74168	0	.	82870231	82870792	0	1	561	0
chr16	82871111	82872327	H1_polyA+.74169	0	.	82871111	82872327	0	1	1216	0
chr16	82933463	82934475	Rinn_00024485	0	+	82933463	82934475	0	2	233,305	0,707
chr16	83055464	83056826	B_Cells_Pritchard.2145899	0	-	83055464	83056826	0	1	1362	0
chr16	83061850	83065537	H1_polyA+.74182	0	.	83061850	83065537	0	1	3687	0
chr16	83061984	83063562	B_cells_Cheung.125894	0	.	83061984	83063562	0	1	1578	0
chr16	83062402	83062756	prostate_normal.37095	0	.	83062402	83062756	0	1	354	0
chr16	83062536	83063446	T47D_Burge_Thompson.18210	0	.	83062536	83063446	0	1	910	0
chr16	83062869	83063491	brain_AmbionMAQC.27968	0	.	83062869	83063491	0	1	622	0
chr16	83063024	83063486	H9_polyA+.28528	0	.	83063024	83063486	0	1	462	0
chr16	83063051	83063550	MIP101.43639	0	.	83063051	83063550	0	1	499	0
chr16	83063068	83063451	prostate_normal.37096	0	.	83063068	83063451	0	1	383	0
chr16	83063071	83063481	MCF7_Burge_Thompson.19495	0	.	83063071	83063481	0	1	410	0
chr16	83063528	83064590	REMC_MyoepithelialBreast.59595	0	.	83063528	83064590	0	1	1062	0
chr16	83063721	83065079	B_cells_Cheung.125895	0	.	83063721	83065079	0	1	1358	0
chr16	83148064	83149407	REMC_MyoepithelialBreast.59605	0	.	83148064	83149407	0	1	1343	0
chr16	83152364	83153183	BT474_Burge_Thompson.20919	0	.	83152364	83153183	0	1	819	0
chr16	83152366	83152751	B_cells_Cheung.125933	0	.	83152366	83152751	0	1	385	0
chr16	83154987	83156331	B_Cells_Pritchard.2146499	0	+	83154987	83156331	0	1	1344	0
chr16	83231884	83232867	B_cells_Cheung.125980	0	.	83231884	83232867	0	1	983	0
chr16	83233736	83235240	B_cells_Cheung.125982	0	.	83233736	83235240	0	1	1504	0
chr16	83233777	83234664	REMC_BreastStem.32559	0	.	83233777	83234664	0	1	887	0
chr16	83233803	83235181	prostate_normal.37053	0	.	83233803	83235181	0	1	1378	0
chr16	83233804	83235149	prostate_carcinoma.63139	0	.	83233804	83235149	0	1	1345	0
chr16	83233841	83234742	BT20_Thompson.13631	0	.	83233841	83234742	0	1	901	0
chr16	83235291	83236577	B_cells_Cheung.125983	0	.	83235291	83236577	0	1	1286	0
chr16	83235317	83236573	B_Cells_Pritchard.2146313	0	-	83235317	83236573	0	1	1256	0
chr16	83235411	83237922	prostate_carcinoma.63140	0	.	83235411	83237922	0	1	2511	0
chr16	83237470	83238010	B_cells_Cheung.125985	0	.	83237470	83238010	0	1	540	0
chr16	83258169	83258551	heart_Burge.18593	0	.	83258169	83258551	0	1	382	0
chr16	83258178	83258536	A549_Myers.52006	0	.	83258178	83258536	0	1	358	0
chr16	83263580	83264178	H1_polyA+.74211	0	.	83263580	83264178	0	1	598	0
chr16	83265063	83266208	REMC_BreastStem.32561	0	.	83265063	83266208	0	1	1145	0
chr16	83265212	83266089	REMC_LuminalBreast.64354	0	.	83265212	83266089	0	1	877	0
chr16	83265216	83268287	REMC_MyoepithelialBreast.59617	0	.	83265216	83268287	0	1	3071	0
chr16	83266631	83267595	REMC_BreastStem.32562	0	.	83266631	83267595	0	1	964	0
chr16	83268381	83269596	REMC_MyoepithelialBreast.59618	0	.	83268381	83269596	0	1	1215	0
chr16	83269714	83270274	REMC_MyoepithelialBreast.59619	0	.	83269714	83270274	0	1	560	0
chr16	83283545	83284670	REMC_MyoepithelialBreast.59620	0	.	83283545	83284670	0	1	1125	0
chr16	83372060	83372749	prostate_carcinoma.63762	0	.	83372060	83372749	0	1	689	0
chr16	83373316	83379629	B_Cells_Pritchard.2146513	0	+	83373316	83379629	0	2	465,2055	0,4258
chr16	83373800	83377684	REMC_LuminalBreast.64386	0	.	83373800	83377684	0	1	3884	0
chr16	83376818	83381137	REMC_MyoepithelialBreast.59633	0	.	83376818	83381137	0	1	4319	0
chr16	83376875	83379648	B_cells_Cheung.126018	0	.	83376875	83379648	0	1	2773	0
chr16	83376904	83379647	CD4_Plagnol_activated.40761	0	.	83376904	83379647	0	1	2743	0
chr16	83377314	83379226	CD4_Plagnol_resting.39744	0	.	83377314	83379226	0	1	1912	0
chr16	83377865	83379405	REMC_LuminalBreast.64387	0	.	83377865	83379405	0	1	1540	0
chr16	83379771	83387313	B_Cells_Pritchard.2146517	0	+	83379771	83387313	0	2	1171,62	0,7480
chr16	83379898	83381786	B_cells_Cheung.126019	0	.	83379898	83381786	0	1	1888	0
chr16	83380863	83381811	REMC_LuminalBreast.64388	0	.	83380863	83381811	0	1	948	0
chr16	83380901	83381771	prostate_carcinoma.63764	0	.	83380901	83381771	0	1	870	0
chr16	83381906	83382900	REMC_LuminalBreast.64389	0	.	83381906	83382900	0	1	994	0
chr16	83381949	83383407	REMC_MyoepithelialBreast.59634	0	.	83381949	83383407	0	1	1458	0
chr16	83382103	83383660	prostate_carcinoma.63765	0	.	83382103	83383660	0	1	1557	0
chr16	83391645	83392802	B_Cells_Pritchard.2146541	0	.	83391645	83392802	0	1	1157	0
chr16	83391764	83392650	B_cells_Cheung.126025	0	.	83391764	83392650	0	1	886	0
chr16	83393457	83393784	CD4_Plagnol_resting.39746	0	.	83393457	83393784	0	1	327	0
chr16	83393479	83393810	prostate_carcinoma.63770	0	.	83393479	83393810	0	1	331	0
chr16	83395350	83395804	B_Cells_Pritchard.2146549	0	.	83395350	83395804	0	1	454	0
chr16	83395445	83395831	B_cells_Cheung.126029	0	.	83395445	83395831	0	1	386	0
chr16	83397363	83398478	B_Cells_Pritchard.2146555	0	.	83397363	83398478	0	1	1115	0
chr16	83399759	83400655	REMC_MyoepithelialBreast.59640	0	.	83399759	83400655	0	1	896	0
chr16	83399794	83400318	prostate_carcinoma.63772	0	.	83399794	83400318	0	1	524	0
chr16	83399795	83400221	B_Cells_Pritchard.2146561	0	.	83399795	83400221	0	1	426	0
chr16	83505227	83507219	REMC_BreastStem.33015	0	.	83505227	83507219	0	2	1106,566	0,1426
chr16	83507294	83509204	REMC_BreastStem.33016	0	.	83507294	83509204	0	1	1910	0
chr16	83512443	83513740	REMC_BreastStem.33018	0	.	83512443	83513740	0	1	1297	0
chr16	83513832	83514970	REMC_BreastStem.33019	0	.	83513832	83514970	0	1	1138	0
chr16	83514016	83514330	A549_Myers.52036	0	.	83514016	83514330	0	1	314	0
chr16	83515129	83516059	REMC_BreastStem.33020	0	.	83515129	83516059	0	1	930	0
chr16	83515600	83516007	testes_Burge.33532	0	.	83515600	83516007	0	1	407	0
chr16	83516789	83517577	REMC_BreastStem.33021	0	.	83516789	83517577	0	1	788	0
chr16	83520613	83532758	pHIT000027753	0	+	83520613	83532758	0	4	72,122,65,104	0,8428,11674,12041
chr16	83539283	83541594	Rinn_00025076	0	-	83539283	83541594	0	4	767,9,33,1291	0,824,890,1020
chr16	83539412	83541645	prostate_carcinoma.63186	0	.	83539412	83541645	0	1	2233	0
chr16	83539808	83540751	prostate_normal.37104	0	.	83539808	83540751	0	1	943	0
chr16	83539974	83540925	Rinn_00024747	0	-	83539974	83540925	0	2	224,658	0,293
chr16	83540136	83540593	Rinn_00025077	0	-	83540136	83540593	0	3	62,111,148	0,131,309
chr16	83546157	83550586	A549_Myers.52044	0	-	83546157	83550586	0	2	62,662	0,3767
chr16	83556729	83557335	A549_Myers.52046	0	.	83556729	83557335	0	1	606	0
chr16	83560965	83562047	A549_Myers.52048	0	-	83560965	83562047	0	2	21,303	0,779
chr16	83715326	83715628	A549_Myers.52088	0	.	83715326	83715628	0	1	302	0
chr16	83728094	83728566	A549_Myers.52090	0	.	83728094	83728566	0	1	472	0
chr16	83728174	83728496	B_Cells_Pritchard.2147599	0	.	83728174	83728496	0	1	322	0
chr16	83728816	83729205	B_Cells_Pritchard.2147601	0	.	83728816	83729205	0	1	389	0
chr16	83733737	83738864	brain_AmbionMAQC.28014	0	.	83733737	83738864	0	1	5127	0
chr16	83733768	83737108	HIT000027005	0	-	83733768	83737108	0	1	3340	0
chr16	83733894	83736856	H1_polyA+.74243	0	.	83733894	83736856	0	1	2962	0
chr16	83733934	83734355	liver_polyA+.87260	0	.	83733934	83734355	0	1	421	0
chr16	83734465	83734867	liver_polyA+.87261	0	.	83734465	83734867	0	1	402	0
chr16	83734598	83735516	prostate_carcinoma.63222	0	.	83734598	83735516	0	1	918	0
chr16	83737193	83738208	prostate_carcinoma.63224	0	.	83737193	83738208	0	1	1015	0
chr16	83737252	83760127	H1_polyA+.74244	0	-	83737252	83760127	0	2	1616,206	0,22669
chr16	83737562	83738076	liver_polyA+.87262	0	.	83737562	83738076	0	1	514	0
chr16	83737626	83738861	prostate_normal.37122	0	.	83737626	83738861	0	1	1235	0
chr16	83737915	83738919	HepG2_Caltech_ENCODE.23530	0	.	83737915	83738919	0	1	1004	0
chr16	83738998	83760073	brain_AmbionMAQC.28015	0	-	83738998	83760073	0	2	1412,152	0,20923
chr16	83738998	83742525	brain_AmbionMAQC.28016	0	.	83738998	83742525	0	1	3527	0
chr16	83739307	83739636	liver_polyA+.87264	0	.	83739307	83739636	0	1	329	0
chr16	83740899	83743071	H1_polyA+.74247	0	.	83740899	83743071	0	1	2172	0
chr16	83741199	83741930	HepG2_Caltech_ENCODE.23532	0	.	83741199	83741930	0	1	731	0
chr16	83741434	83742021	prostate_carcinoma.63227	0	.	83741434	83742021	0	1	587	0
chr16	83741883	83742559	kidney_Raymond.67501	0	.	83741883	83742559	0	1	676	0
chr16	83742520	83742952	A549_Myers.52093	0	.	83742520	83742952	0	1	432	0
chr16	83742977	83749655	B_Cells_Pritchard.2147669	0	+	83742977	83749655	0	2	948,490	0,6188
chr16	83747335	83749607	H1_polyA+.74250	0	.	83747335	83749607	0	1	2272	0
chr16	83748055	83749908	HepG2_Caltech_ENCODE.23534	0	.	83748055	83749908	0	1	1853	0
chr16	83748063	83749151	B_Cells_Pritchard.2147695	0	+	83748063	83749151	0	1	1088	0
chr16	83748693	83749662	brain_AmbionMAQC.28022	0	.	83748693	83749662	0	1	969	0
chr16	83749954	83751115	brain_AmbionMAQC.28023	0	.	83749954	83751115	0	1	1161	0
chr16	83752741	83754310	H1_polyA+.74252	0	.	83752741	83754310	0	1	1569	0
chr16	83752925	83754304	brain_AmbionMAQC.28026	0	.	83752925	83754304	0	1	1379	0
chr16	83755293	83758006	H1_polyA+.74253	0	.	83755293	83758006	0	1	2713	0
chr16	83755467	83759480	B_cells_Cheung.126170	0	.	83755467	83759480	0	1	4013	0
chr16	83755491	83756240	HepG2_Caltech_ENCODE.23537	0	.	83755491	83756240	0	1	749	0
chr16	83756606	83757179	B_Cells_Pritchard.2147729	0	.	83756606	83757179	0	1	573	0
chr16	83756693	83758222	brain_AmbionMAQC.28029	0	.	83756693	83758222	0	1	1529	0
chr16	83756946	83758103	prostate_carcinoma.63228	0	.	83756946	83758103	0	1	1157	0
chr16	83758296	83759628	B_Cells_Pritchard.2147737	0	.	83758296	83759628	0	1	1332	0
chr16	83758872	83759605	H1_polyA+.74254	0	.	83758872	83759605	0	1	733	0
chr16	83760212	83762889	A549_Myers.52096	0	+	83760212	83762889	0	3	182,68,1910	0,372,767
chr16	83760306	83762910	MCF7_Burge_Thompson.19538	0	+	83760306	83762910	0	2	88,738	0,1866
chr16	83760338	83762918	B_Cells_Pritchard.2147743	0	+	83760338	83762918	0	3	56,136,1489	0,845,1091
chr16	83760344	83762871	breast_Burge.25364	0	+	83760344	83762871	0	2	50,846	0,1681
chr16	83760476	83762889	A549_Myers.52097	0	.	83760476	83762889	0	1	2413	0
chr16	83760528	83762910	MCF7_Burge_Thompson.19539	0	.	83760528	83762910	0	1	2382	0
chr16	83760581	83762908	BT20_Thompson.13659	0	.	83760581	83762908	0	1	2327	0
chr16	83760584	83762908	brain_AmbionMAQC.28010	0	.	83760584	83762908	0	1	2324	0
chr16	83760588	83763031	prostate_carcinoma.63229	0	.	83760588	83763031	0	1	2443	0
chr16	83760596	83762911	MCF10A_Thompson.13761	0	.	83760596	83762911	0	1	2315	0
chr16	83760616	83762909	prostate_normal.37123	0	.	83760616	83762909	0	1	2293	0
chr16	83760673	83762914	pHIT000089593	0	+	83760673	83762914	0	3	96,123,1782	0,156,459
chr16	83760673	83764197	pHIT000027758	0	+	83760673	83764197	0	2	2241,135	0,3389
chr16	83760678	83761210	skeletal_muscle_Burge.18702	0	.	83760678	83761210	0	1	532	0
chr16	83760694	83762701	T47D_Burge_Thompson.18255	0	.	83760694	83762701	0	1	2007	0
chr16	83760937	83773141	MDAMB231_Thompson.14221	0	+	83760937	83773141	0	2	1977,25	0,12179
chr16	83761053	83776251	melanoma_Garraway_short_term_cultures.43522	0	+	83761053	83776251	0	2	1861,26	0,15172
chr16	83761189	83762929	K562.28598	0	.	83761189	83762929	0	1	1740	0
chr16	83761234	83762882	REMC_LuminalBreast.64428	0	.	83761234	83762882	0	1	1648	0
chr16	83761344	83761752	colon_Burge.23873	0	.	83761344	83761752	0	1	408	0
chr16	83761398	83762917	skeletal_muscle_Burge.18703	0	.	83761398	83762917	0	1	1519	0
chr16	83761532	83762395	liver_polyA+.87270	0	.	83761532	83762395	0	1	863	0
chr16	83761557	83762251	HeLa_polyA-_Chen.12494	0	.	83761557	83762251	0	1	694	0
chr16	83761689	83762914	H9_polyA-_Chen.9138	0	.	83761689	83762914	0	1	1225	0
chr16	83762205	83762679	NEC_from_H9.47456	0	.	83762205	83762679	0	1	474	0
chr16	83762439	83762829	HeLa_polyA-_Chen.12493	0	.	83762439	83762829	0	1	390	0
chr16	83762468	83762884	liver_polyA+.87271	0	.	83762468	83762884	0	1	416	0
chr16	83762490	83762850	BT474_Burge_Thompson.20947	0	.	83762490	83762850	0	1	360	0
chr16	83765184	83766346	B_Cells_Pritchard.2147757	0	.	83765184	83766346	0	1	1162	0
chr16	83765695	83767583	khalil_863	0	.	83765695	83767583	0	2	729,198	0,1690
chr16	83766255	83766896	A549_Myers.52099	0	.	83766255	83766896	0	1	641	0
chr16	83766445	83767572	H1_polyA+.74725	0	.	83766445	83767572	0	1	1127	0
chr16	83767625	83768723	A549_Myers.52100	0	.	83767625	83768723	0	1	1098	0
chr16	83773274	83774074	H9_polyA+.28620	0	.	83773274	83774074	0	1	800	0
chr16	83773363	83774331	REMC_LuminalBreast.64430	0	.	83773363	83774331	0	1	968	0
chr16	83773604	83774507	brain_AmbionMAQC.28011	0	.	83773604	83774507	0	1	903	0
chr16	83773796	83774323	B_Cells_Pritchard.2147795	0	.	83773796	83774323	0	1	527	0
chr16	83775938	83777464	H1_polyA+.74727	0	.	83775938	83777464	0	1	1526	0
chr16	83776153	83777449	B_Cells_Pritchard.2147807	0	.	83776153	83777449	0	1	1296	0
chr16	83776345	83776882	liver_polyA+.87272	0	.	83776345	83776882	0	1	537	0
chr16	83777031	83778244	HepG2_Caltech_ENCODE.23565	0	.	83777031	83778244	0	1	1213	0
chr16	83777593	83780830	B_cells_Cheung.126188	0	.	83777593	83780830	0	1	3237	0
chr16	83777728	83780331	H1_polyA+.74728	0	.	83777728	83780331	0	1	2603	0
chr16	83778292	83779646	B_Cells_Pritchard.2147811	0	.	83778292	83779646	0	1	1354	0
chr16	83778355	83780821	HepG2_Caltech_ENCODE.23566	0	.	83778355	83780821	0	1	2466	0
chr16	83778365	83779120	liver_polyA+.87273	0	.	83778365	83779120	0	1	755	0
chr16	83778715	83779096	A549_Myers.52102	0	.	83778715	83779096	0	1	381	0
chr16	83779060	83779433	brain_AmbionMAQC.28012	0	.	83779060	83779433	0	1	373	0
chr16	83779748	83780425	B_Cells_Pritchard.2147813	0	.	83779748	83780425	0	1	677	0
chr16	83779771	83780366	melanoma_Garraway_short_term_cultures.43523	0	.	83779771	83780366	0	1	595	0
chr16	83785347	83790084	B_cells_Cheung.126194	0	.	83785347	83790084	0	1	4737	0
chr16	83786225	83787806	HepG2_Caltech_ENCODE.23569	0	.	83786225	83787806	0	1	1581	0
chr16	83786385	83787109	H9_polyA+.28621	0	.	83786385	83787109	0	1	724	0
chr16	83786482	83787379	H1_polyA+.74732	0	.	83786482	83787379	0	1	897	0
chr16	83788521	83789466	REMC_BreastStem.32706	0	.	83788521	83789466	0	1	945	0
chr16	83788676	83789833	B_Cells_Pritchard.2147851	0	.	83788676	83789833	0	1	1157	0
chr16	83789034	83789838	brain_AmbionMAQC.28013	0	.	83789034	83789838	0	1	804	0
chr16	83790184	83791334	B_cells_Cheung.126195	0	.	83790184	83791334	0	1	1150	0
chr16	83790233	83791256	H1_polyA+.74735	0	.	83790233	83791256	0	1	1023	0
chr16	83790525	83791242	H9_polyA+.28623	0	.	83790525	83791242	0	1	717	0
chr16	83790720	83791242	B_Cells_Pritchard.2147859	0	.	83790720	83791242	0	1	522	0
chr16	83791535	83792159	H1_polyA+.74736	0	.	83791535	83792159	0	1	624	0
chr16	83793083	83794065	H1_polyA+.74737	0	.	83793083	83794065	0	1	982	0
chr16	83794242	83794827	H1_polyA+.74738	0	.	83794242	83794827	0	1	585	0
chr16	83794370	83794713	A549_Myers.52105	0	.	83794370	83794713	0	1	343	0
chr16	83796945	83797382	B_Cells_Pritchard.2147883	0	.	83796945	83797382	0	1	437	0
chr16	83796994	83797559	A549_Myers.52106	0	.	83796994	83797559	0	1	565	0
chr16	83798027	83798803	B_Cells_Pritchard.2147887	0	.	83798027	83798803	0	1	776	0
chr16	83798038	83798501	A549_Myers.52107	0	.	83798038	83798501	0	1	463	0
chr16	83798281	83799137	H1_polyA+.74741	0	.	83798281	83799137	0	1	856	0
chr16	83799905	83800599	B_cells_Cheung.126203	0	.	83799905	83800599	0	1	694	0
chr16	83800009	83800593	B_Cells_Pritchard.2147891	0	.	83800009	83800593	0	1	584	0
chr16	83801222	83802058	H1_polyA+.74745	0	.	83801222	83802058	0	1	836	0
chr16	83801730	83803325	B_cells_Cheung.126205	0	.	83801730	83803325	0	1	1595	0
chr16	83801928	83803235	B_Cells_Pritchard.2147901	0	.	83801928	83803235	0	1	1307	0
chr16	83802277	83803238	H1_polyA+.74746	0	.	83802277	83803238	0	1	961	0
chr16	83803459	83807220	B_cells_Cheung.126206	0	.	83803459	83807220	0	1	3761	0
chr16	83804396	83822126	B_Cells_Pritchard.2147907	0	-	83804396	83822126	0	6	953,606,545,419,579,4554	0,1013,1705,10557,11012,13176
chr16	83804779	83806572	H9_polyA+.28626	0	.	83804779	83806572	0	1	1793	0
chr16	83805945	83806893	HepG2_Caltech_ENCODE.23572	0	.	83805945	83806893	0	1	948	0
chr16	83807414	83808016	H1_polyA+.74749	0	.	83807414	83808016	0	1	602	0
chr16	83807931	83808889	B_cells_Cheung.126207	0	.	83807931	83808889	0	1	958	0
chr16	83809337	83810017	B_cells_Cheung.126208	0	.	83809337	83810017	0	1	680	0
chr16	83810223	83811114	H1_polyA+.74752	0	.	83810223	83811114	0	1	891	0
chr16	83811350	83812058	melanoma_Garraway_short_term_cultures.43524	0	.	83811350	83812058	0	1	708	0
chr16	83811396	83811954	H1_polyA+.74753	0	.	83811396	83811954	0	1	558	0
chr16	83811580	83812884	B_cells_Cheung.126210	0	.	83811580	83812884	0	1	1304	0
chr16	83812215	83812812	H1_polyA+.74754	0	.	83812215	83812812	0	1	597	0
chr16	83812984	83814378	B_cells_Cheung.126213	0	-	83812984	83814378	0	2	1010,266	0,1128
chr16	83813065	83814362	H1_polyA+.74751	0	.	83813065	83814362	0	1	1297	0
chr16	83814915	83815844	B_cells_Cheung.126212	0	.	83814915	83815844	0	1	929	0
chr16	83814919	83815853	H1_polyA+.74755	0	.	83814919	83815853	0	1	934	0
chr16	83814977	83815592	REMC_BreastStem.32707	0	.	83814977	83815592	0	1	615	0
chr16	83814988	83816625	liver_polyA+.87277	0	+	83814988	83816625	0	2	619,423	0,1214
chr16	83817239	83818638	H9_polyA+.28627	0	.	83817239	83818638	0	1	1399	0
chr16	83817516	83817882	H1_polyA+.74757	0	.	83817516	83817882	0	1	366	0
chr16	83817524	83817841	A549_Myers.52111	0	.	83817524	83817841	0	1	317	0
chr16	83817692	83819218	prostate_carcinoma.63232	0	.	83817692	83819218	0	1	1526	0
chr16	83817989	83822126	B_Cells_Pritchard.2147905	0	+	83817989	83822126	0	2	1278,2859	0,1278
chr16	83818273	83821410	B_cells_Cheung.126215	0	.	83818273	83821410	0	1	3137	0
chr16	83818440	83818944	H1_polyA+.74758	0	.	83818440	83818944	0	1	504	0
chr16	83818493	83818802	liver_polyA+.87278	0	.	83818493	83818802	0	1	309	0
chr16	83819488	83820284	prostate_carcinoma.63233	0	.	83819488	83820284	0	1	796	0
chr16	83819632	83820543	H9_polyA+.28628	0	.	83819632	83820543	0	1	911	0
chr16	83820123	83820877	H1_polyA+.74759	0	.	83820123	83820877	0	1	754	0
chr16	83821197	83822636	H1_polyA+.74760	0	.	83821197	83822636	0	1	1439	0
chr16	83821900	83822396	brain_AmbionMAQC.28030	0	.	83821900	83822396	0	1	496	0
chr16	83822594	83823517	B_Cells_Pritchard.2148023	0	.	83822594	83823517	0	1	923	0
chr16	83823637	83828166	B_Cells_Pritchard.2148025	0	.	83823637	83828166	0	1	4529	0
chr16	83823880	83825038	prostate_carcinoma.63239	0	.	83823880	83825038	0	1	1158	0
chr16	83824544	83824977	A549_Myers.52112	0	.	83824544	83824977	0	1	433	0
chr16	83824701	83825110	H1_polyA+.74762	0	.	83824701	83825110	0	1	409	0
chr16	83827413	83828717	H1_polyA+.74763	0	.	83827413	83828717	0	1	1304	0
chr16	83828342	83833775	B_Cells_Pritchard.2148027	0	+	83828342	83833775	0	3	355,175,3459	0,588,1974
chr16	83828899	83835821	B_cells_Cheung.126216	0	.	83828899	83835821	0	1	6922	0
chr16	83828949	83829585	H1_polyA+.74764	0	.	83828949	83829585	0	1	636	0
chr16	83830929	83831552	HepG2_Caltech_ENCODE.23573	0	.	83830929	83831552	0	1	623	0
chr16	83832782	83834977	H1_polyA+.74768	0	.	83832782	83834977	0	1	2195	0
chr16	83834201	83834850	B_Cells_Pritchard.2148039	0	.	83834201	83834850	0	1	649	0
chr16	83834517	83834870	A549_Myers.52115	0	.	83834517	83834870	0	1	353	0
chr16	83836079	83838881	H1_polyA+.74769	0	.	83836079	83838881	0	1	2802	0
chr16	83840469	83841261	A549_Myers.52117	0	.	83840469	83841261	0	1	792	0
chr16	83844116	83844551	H1_polyA+.74771	0	.	83844116	83844551	0	1	435	0
chr16	83844149	83845234	A549_Myers.52118	0	.	83844149	83845234	0	1	1085	0
chr16	83844723	83845638	H1_polyA+.74772	0	.	83844723	83845638	0	1	915	0
chr16	83847894	83849092	H1_polyA+.74774	0	.	83847894	83849092	0	1	1198	0
chr16	83849212	83849984	H1_polyA+.74775	0	.	83849212	83849984	0	1	772	0
chr16	83850160	83851353	H1_polyA+.74776	0	.	83850160	83851353	0	1	1193	0
chr16	83851709	83852797	H1_polyA+.74777	0	.	83851709	83852797	0	1	1088	0
chr16	83860058	83860666	H1_polyA+.74781	0	.	83860058	83860666	0	1	608	0
chr16	83866592	83867055	A549_Myers.52122	0	.	83866592	83867055	0	1	463	0
chr16	83876101	83877122	REMC_BreastStem.32708	0	.	83876101	83877122	0	1	1021	0
chr16	83876633	83877825	B_cells_Cheung.126225	0	.	83876633	83877825	0	1	1192	0
chr16	83876714	83877550	B_Cells_Pritchard.2148209	0	.	83876714	83877550	0	1	836	0
chr16	83876797	83877581	H1_polyA+.74783	0	.	83876797	83877581	0	1	784	0
chr16	83876834	83878017	liver_polyA+.87283	0	.	83876834	83878017	0	1	1183	0
chr16	83877853	83878559	H1_polyA+.74784	0	.	83877853	83878559	0	1	706	0
chr16	83878140	83879069	liver_polyA+.87285	0	.	83878140	83879069	0	1	929	0
chr16	83878140	83879069	liver_polyA+.87284	0	+	83878140	83879069	0	2	726,101	0,828
chr16	83878312	83879086	B_Cells_Pritchard.2148215	0	.	83878312	83879086	0	1	774	0
chr16	83879912	83880333	liver_polyA+.87286	0	.	83879912	83880333	0	1	421	0
chr16	83881039	83881905	B_Cells_Pritchard.2148227	0	.	83881039	83881905	0	1	866	0
chr16	83884752	83885409	B_Cells_Pritchard.2148247	0	.	83884752	83885409	0	1	657	0
chr16	83884755	83885456	liver_polyA+.87290	0	.	83884755	83885456	0	1	701	0
chr16	83891524	83891953	A549_Myers.52125	0	.	83891524	83891953	0	1	429	0
chr16	83893858	83900303	K562.28605	0	+	83893858	83900303	0	2	46,1001	0,5444
chr16	83894728	83895322	A549_Myers.52127	0	.	83894728	83895322	0	1	594	0
chr16	83896103	83896447	testes_Burge.33567	0	.	83896103	83896447	0	1	344	0
chr16	83896249	83896698	B_cells_Cheung.126234	0	.	83896249	83896698	0	1	449	0
chr16	83897802	83898657	T47D_Burge_Thompson.18261	0	.	83897802	83898657	0	1	855	0
chr16	83898478	83903038	Rinn_00024749	0	-	83898478	83903038	0	2	705,390	0,4170
chr16	83898950	83902726	testes_Burge.33560	0	-	83898950	83902726	0	2	233,77	0,3699
chr16	83899070	83900589	T47D_Burge_Thompson.18259	0	.	83899070	83900589	0	1	1519	0
chr16	83899287	83900620	B_Cells_Pritchard.2148315	0	.	83899287	83900620	0	1	1333	0
chr16	83899744	83900567	BT474_Burge_Thompson.20948	0	.	83899744	83900567	0	1	823	0
chr16	83899891	83900535	H1_polyA+.74790	0	.	83899891	83900535	0	1	644	0
chr16	83902785	83903214	T47D_Burge_Thompson.18262	0	.	83902785	83903214	0	1	429	0
chr16	83905306	83905758	A549_Myers.52133	0	.	83905306	83905758	0	1	452	0
chr16	83907451	83907881	A549_Myers.52134	0	.	83907451	83907881	0	1	430	0
chr16	83914429	83915340	prostate_carcinoma.63242	0	.	83914429	83915340	0	1	911	0
chr16	83915713	83916016	liver_polyA+.87293	0	.	83915713	83916016	0	1	303	0
chr16	83918766	83919536	prostate_carcinoma.63243	0	.	83918766	83919536	0	1	770	0
chr16	83919766	83920646	prostate_carcinoma.63244	0	.	83919766	83920646	0	1	880	0
chr16	83919887	83920191	A549_Myers.52139	0	.	83919887	83920191	0	1	304	0
chr16	83921161	83921745	A549_Myers.52140	0	.	83921161	83921745	0	1	584	0
chr16	83921176	83921742	prostate_carcinoma.63245	0	.	83921176	83921742	0	1	566	0
chr16	83923370	83926231	prostate_carcinoma.63246	0	.	83923370	83926231	0	1	2861	0
chr16	83924136	83925730	BT474_Burge_Thompson.20950	0	.	83924136	83925730	0	1	1594	0
chr16	83924520	83925416	melanoma_Garraway_short_term_cultures.43526	0	.	83924520	83925416	0	1	896	0
chr16	83924772	83926153	MDAMB231_Thompson.14223	0	.	83924772	83926153	0	1	1381	0
chr16	83938038	83952343	H1_polyA+.74791	0	+	83938038	83952343	0	2	23,618	0,13687
chr16	83947344	83947710	A549_Myers.52144	0	.	83947344	83947710	0	1	366	0
chr16	83948413	83948817	prostate_carcinoma.63247	0	.	83948413	83948817	0	1	404	0
chr16	83948477	83949004	B_Cells_Pritchard.2148463	0	.	83948477	83949004	0	1	527	0
chr16	83948530	83967312	pHIT000116055	0	+	83948530	83967312	0	3	220,133,52	0,13722,18730
chr16	83948571	83950663	BT474_Burge_Thompson.20951	0	+	83948571	83950663	0	2	179,215	0,1877
chr16	83949831	83950807	K562.28607	0	.	83949831	83950807	0	1	976	0
chr16	83950194	83950868	B_cells_Cheung.126128	0	.	83950194	83950868	0	1	674	0
chr16	83951095	83952451	prostate_carcinoma.63248	0	.	83951095	83952451	0	1	1356	0
chr16	83951199	83953923	K562.28608	0	.	83951199	83953923	0	1	2724	0
chr16	83951576	83952353	H1_polyA+.74792	0	.	83951576	83952353	0	1	777	0
chr16	83951634	83952411	A549_Myers.52146	0	-	83951634	83952411	0	2	339,111	0,666
chr16	83951784	83952479	colon_Raymond.80980	0	-	83951784	83952479	0	2	189,119	0,576
chr16	83951800	83952356	spleen_Raymond.129989	0	-	83951800	83952356	0	2	173,262	0,294
chr16	83951808	83952470	adipose_Raymond.45739	0	-	83951808	83952470	0	2	165,267	0,395
chr16	83951808	83952475	kidney_Raymond.67506	0	-	83951808	83952475	0	3	165,137,58	0,395,609
chr16	83951898	83952475	testes_Raymond.112096	0	-	83951898	83952475	0	2	75,227	0,350
chr16	83952094	83952481	ovary_Raymond.167973	0	.	83952094	83952481	0	1	387	0
chr16	83952149	83952479	colon_Raymond.80981	0	.	83952149	83952479	0	1	330	0
chr16	83952150	83952470	adipose_Raymond.45740	0	.	83952150	83952470	0	1	320	0
chr16	83953056	83956558	H1_polyA+.74795	0	.	83953056	83956558	0	1	3502	0
chr16	83955259	83956069	prostate_carcinoma.63249	0	.	83955259	83956069	0	1	810	0
chr16	83955780	83956133	A549_Myers.52147	0	.	83955780	83956133	0	1	353	0
chr16	83956330	83956866	prostate_carcinoma.63250	0	.	83956330	83956866	0	1	536	0
chr16	83956872	83957873	H1_polyA+.74796	0	.	83956872	83957873	0	1	1001	0
chr16	83957999	83958930	H1_polyA+.74797	0	.	83957999	83958930	0	1	931	0
chr16	83959211	83959557	H1_polyA+.74798	0	.	83959211	83959557	0	1	346	0
chr16	83962085	83962498	prostate_carcinoma.63251	0	.	83962085	83962498	0	1	413	0
chr16	83963049	83963353	liver_polyA+.87295	0	.	83963049	83963353	0	1	304	0
chr16	83964840	83966159	H1_polyA+.74802	0	.	83964840	83966159	0	1	1319	0
chr16	83964868	83965792	prostate_normal.37127	0	.	83964868	83965792	0	1	924	0
chr16	83964940	83965635	H9_polyA+.28630	0	.	83964940	83965635	0	1	695	0
chr16	83965179	83965523	A549_Myers.52152	0	.	83965179	83965523	0	1	344	0
chr16	83965363	83965887	B_cells_Cheung.126144	0	.	83965363	83965887	0	1	524	0
chr16	83967147	83967966	B_Cells_Pritchard.2148561	0	.	83967147	83967966	0	1	819	0
chr16	83967723	83968256	A549_Myers.52153	0	.	83967723	83968256	0	1	533	0
chr16	83967893	83969194	BT474_Burge_Thompson.20953	0	.	83967893	83969194	0	1	1301	0
chr16	83968156	83974644	prostate_carcinoma.63253	0	-	83968156	83974644	0	2	6371,31	0,6457
chr16	83968156	83977229	prostate_carcinoma.63252	0	.	83968156	83977229	0	1	9073	0
chr16	83968172	83969196	ZR751_Thompson.15475	0	.	83968172	83969196	0	1	1024	0
chr16	83968510	83969158	T47D_Burge_Thompson.18263	0	.	83968510	83969158	0	1	648	0
chr16	83969264	83975943	BT474_Burge_Thompson.20957	0	.	83969264	83975943	0	1	6679	0
chr16	83969569	83970184	H1_polyA+.74803	0	.	83969569	83970184	0	1	615	0
chr16	83969618	83970023	prostate_normal.37130	0	.	83969618	83970023	0	1	405	0
chr16	83969813	83972131	T47D_Burge_Thompson.18265	0	.	83969813	83972131	0	1	2318	0
chr16	83970726	83975869	K562.28610	0	.	83970726	83975869	0	1	5143	0
chr16	83971979	83972989	H1_polyA+.74805	0	.	83971979	83972989	0	1	1010	0
chr16	83972186	83972710	T47D_Burge_Thompson.18266	0	.	83972186	83972710	0	1	524	0
chr16	83972838	83976050	T47D_Burge_Thompson.18267	0	.	83972838	83976050	0	1	3212	0
chr16	83973205	83974800	H1_polyA+.74800	0	.	83973205	83974800	0	1	1595	0
chr16	83973290	83982125	prostate_normal.37131	0	-	83973290	83982125	0	2	1237,306	0,8529
chr16	83973595	83975590	ZR751_Thompson.15479	0	.	83973595	83975590	0	1	1995	0
chr16	83973611	83974281	H9_polyA+.28631	0	.	83973611	83974281	0	1	670	0
chr16	83973741	83974862	prostate_normal.37132	0	.	83973741	83974862	0	1	1121	0
chr16	83973789	83974291	A549_Myers.52154	0	.	83973789	83974291	0	1	502	0
chr16	83974916	83975595	H1_polyA+.74806	0	.	83974916	83975595	0	1	679	0
chr16	83975881	83976422	A549_Myers.52155	0	.	83975881	83976422	0	1	541	0
chr16	83977220	83979016	prostate_normal.37135	0	.	83977220	83979016	0	1	1796	0
chr16	83977356	83978455	BT474_Burge_Thompson.20958	0	.	83977356	83978455	0	1	1099	0
chr16	83977577	83978386	H1_polyA+.74807	0	.	83977577	83978386	0	1	809	0
chr16	83979513	83980332	BT474_Burge_Thompson.20959	0	.	83979513	83980332	0	1	819	0
chr16	83979619	83980159	prostate_normal.37128	0	.	83979619	83980159	0	1	540	0
chr16	83979776	83980330	H1_polyA+.74808	0	.	83979776	83980330	0	1	554	0
chr16	83979784	83980290	B_cells_Cheung.126145	0	.	83979784	83980290	0	1	506	0
chr16	83979819	83980509	liver_polyA+.87296	0	-	83979819	83980509	0	2	487,68	0,622
chr16	83980464	83981381	H1_polyA+.74809	0	.	83980464	83981381	0	1	917	0
chr16	83981395	83982463	HepG2_Caltech_ENCODE.23575	0	.	83981395	83982463	0	1	1068	0
chr16	83981810	83982253	A549_Myers.52156	0	.	83981810	83982253	0	1	443	0
chr16	83981900	83983998	prostate_carcinoma.63255	0	.	83981900	83983998	0	1	2098	0
chr16	83981970	83982647	H1_polyA+.74810	0	.	83981970	83982647	0	1	677	0
chr16	83982006	83982372	B_Cells_Pritchard.2148615	0	.	83982006	83982372	0	1	366	0
chr16	83982229	83983271	K562.28611	0	.	83982229	83983271	0	1	1042	0
chr16	83982776	83983419	H1_polyA+.74811	0	.	83982776	83983419	0	1	643	0
chr16	83982830	83983395	BT474_Burge_Thompson.20960	0	.	83982830	83983395	0	1	565	0
chr16	83984837	83985212	A549_Myers.52157	0	.	83984837	83985212	0	1	375	0
chr16	83985413	83986602	prostate_carcinoma.63257	0	.	83985413	83986602	0	1	1189	0
chr16	83986256	83986816	H9_polyA+.28632	0	.	83986256	83986816	0	1	560	0
chr16	83986986	83988897	prostate_carcinoma.63258	0	.	83986986	83988897	0	1	1911	0
chr16	83987855	83988402	H1_polyA+.74814	0	.	83987855	83988402	0	1	547	0
chr16	83989167	83993772	prostate_carcinoma.63259	0	.	83989167	83993772	0	1	4605	0
chr16	83989704	83990552	H1_polyA+.74816	0	.	83989704	83990552	0	1	848	0
chr16	83989965	83990298	prostate_normal.37137	0	.	83989965	83990298	0	1	333	0
chr16	83990394	83991816	K562.28612	0	.	83990394	83991816	0	1	1422	0
chr16	83991308	83992354	prostate_normal.37133	0	.	83991308	83992354	0	1	1046	0
chr16	83991308	84008629	prostate_normal.37134	0	+	83991308	84008629	0	2	711,8	0,17313
chr16	83991341	83991681	BT474_Burge_Thompson.20954	0	.	83991341	83991681	0	1	340	0
chr16	83991436	83992347	Rinn_00024751	0	-	83991436	83992347	0	2	305,376	0,535
chr16	83991495	83992413	H1_polyA+.74817	0	.	83991495	83992413	0	1	918	0
chr16	83992637	83993241	K562.28613	0	.	83992637	83993241	0	1	604	0
chr16	83993922	83995261	K562.28614	0	.	83993922	83995261	0	1	1339	0
chr16	84004270	84004647	A549_Myers.52161	0	.	84004270	84004647	0	1	377	0
chr16	84004462	84005770	H1_polyA+.74819	0	.	84004462	84005770	0	1	1308	0
chr16	84006179	84007878	prostate_carcinoma.63263	0	.	84006179	84007878	0	1	1699	0
chr16	84008078	84008941	prostate_carcinoma.63264	0	.	84008078	84008941	0	1	863	0
chr16	84009255	84027897	prostate_carcinoma.63265	0	-	84009255	84027897	0	2	1228,840	0,17802
chr16	84009274	84009782	H1_polyA+.74821	0	.	84009274	84009782	0	1	508	0
chr16	84009485	84010598	prostate_carcinoma.63266	0	.	84009485	84010598	0	1	1113	0
chr16	84009886	84010936	H1_polyA+.74822	0	.	84009886	84010936	0	1	1050	0
chr16	84011382	84016153	prostate_carcinoma.63269	0	.	84011382	84016153	0	1	4771	0
chr16	84011401	84011841	H1_polyA+.74823	0	.	84011401	84011841	0	1	440	0
chr16	84011406	84012214	A549_Myers.52162	0	.	84011406	84012214	0	1	808	0
chr16	84013409	84013989	breast_Burge.25370	0	.	84013409	84013989	0	1	580	0
chr16	84013466	84013874	prostate_normal.37139	0	.	84013466	84013874	0	1	408	0
chr16	84013488	84013953	B_cells_Cheung.126150	0	.	84013488	84013953	0	1	465	0
chr16	84013540	84013943	testes_Burge.33586	0	.	84013540	84013943	0	1	403	0
chr16	84013546	84014063	BT474_Burge_Thompson.20955	0	.	84013546	84014063	0	1	517	0
chr16	84013589	84013917	liver_polyA+.87298	0	.	84013589	84013917	0	1	328	0
chr16	84013592	84014340	B_Cells_Pritchard.2148727	0	.	84013592	84014340	0	1	748	0
chr16	84014726	84015431	H1_polyA+.74825	0	.	84014726	84015431	0	1	705	0
chr16	84014763	84015092	BT474_Burge_Thompson.20956	0	.	84014763	84015092	0	1	329	0
chr16	84015477	84016963	prostate_normal.37138	0	.	84015477	84016963	0	1	1486	0
chr16	84016348	84017494	H1_polyA+.74826	0	.	84016348	84017494	0	1	1146	0
chr16	84016356	84024207	prostate_carcinoma.63272	0	+	84016356	84024207	0	4	972,222,699,849	0,1010,1435,7002
chr16	84019028	84019593	prostate_carcinoma.63273	0	.	84019028	84019593	0	1	565	0
chr16	84019054	84019636	A549_Myers.52164	0	.	84019054	84019636	0	1	582	0
chr16	84019064	84019876	prostate_normal.37140	0	.	84019064	84019876	0	1	812	0
chr16	84019680	84020314	H1_polyA+.74828	0	.	84019680	84020314	0	1	634	0
chr16	84019912	84021575	prostate_carcinoma.63274	0	.	84019912	84021575	0	1	1663	0
chr16	84020075	84020733	A549_Myers.52165	0	.	84020075	84020733	0	1	658	0
chr16	84023086	84024383	prostate_carcinoma.63271	0	.	84023086	84024383	0	1	1297	0
chr16	84024097	84024917	K562.28619	0	.	84024097	84024917	0	1	820	0
chr16	84024654	84024968	adipose_Raymond.45748	0	.	84024654	84024968	0	1	314	0
chr16	84025951	84026582	prostate_carcinoma.63276	0	.	84025951	84026582	0	1	631	0
chr16	84026773	84027897	prostate_carcinoma.63267	0	.	84026773	84027897	0	1	1124	0
chr16	84028595	84029477	prostate_carcinoma.63277	0	.	84028595	84029477	0	1	882	0
chr16	84029579	84032485	prostate_carcinoma.63278	0	.	84029579	84032485	0	1	2906	0
chr16	84030727	84031137	prostate_normal.37142	0	.	84030727	84031137	0	1	410	0
chr16	84030812	84031672	H1_polyA+.74831	0	.	84030812	84031672	0	1	860	0
chr16	84030969	84031637	H9_polyA+.28634	0	.	84030969	84031637	0	1	668	0
chr16	84031214	84031792	prostate_normal.37143	0	.	84031214	84031792	0	1	578	0
chr16	84031860	84032532	H1_polyA+.74832	0	.	84031860	84032532	0	1	672	0
chr16	84033242	84035132	H1_polyA+.74834	0	.	84033242	84035132	0	1	1890	0
chr16	84033248	84033826	prostate_carcinoma.63280	0	.	84033248	84033826	0	1	578	0
chr16	84034691	84035941	prostate_normal.37144	0	-	84034691	84035941	0	2	466,214	0,1036
chr16	84035347	84036294	H1_polyA+.74835	0	.	84035347	84036294	0	1	947	0
chr16	84035383	84036475	prostate_carcinoma.63282	0	.	84035383	84036475	0	1	1092	0
chr16	84036227	84040887	BT474_Burge_Thompson.21580	0	.	84036227	84040887	0	1	4660	0
chr16	84036227	84057974	BT474_Burge_Thompson.21579	0	+	84036227	84057974	0	2	1875,16	0,21731
chr16	84036229	84036682	A549_Myers.52168	0	.	84036229	84036682	0	1	453	0
chr16	84036497	84037510	H1_polyA+.74836	0	.	84036497	84037510	0	1	1013	0
chr16	84037012	84037678	HepG2_Caltech_ENCODE.23578	0	.	84037012	84037678	0	1	666	0
chr16	84037197	84038079	ZR751_Thompson.15480	0	.	84037197	84038079	0	1	882	0
chr16	84037384	84038770	prostate_carcinoma.63283	0	.	84037384	84038770	0	1	1386	0
chr16	84037767	84038137	A549_Myers.52169	0	.	84037767	84038137	0	1	370	0
chr16	84038111	84039744	T47D_Burge_Thompson.18533	0	.	84038111	84039744	0	1	1633	0
chr16	84038785	84040262	H1_polyA+.74837	0	.	84038785	84040262	0	1	1477	0
chr16	84038837	84040405	prostate_carcinoma.63284	0	.	84038837	84040405	0	1	1568	0
chr16	84039803	84044220	T47D_Burge_Thompson.18534	0	-	84039803	84044220	0	2	1094,1138	0,3279
chr16	84040363	84041246	H1_polyA+.74838	0	.	84040363	84041246	0	1	883	0
chr16	84040605	84040936	liver_polyA+.87301	0	.	84040605	84040936	0	1	331	0
chr16	84040625	84041153	prostate_carcinoma.63285	0	.	84040625	84041153	0	1	528	0
chr16	84042833	84044220	T47D_Burge_Thompson.18535	0	.	84042833	84044220	0	1	1387	0
chr16	84042849	84043470	H1_polyA+.74840	0	.	84042849	84043470	0	1	621	0
chr16	84042889	84043367	BT474_Burge_Thompson.21581	0	.	84042889	84043367	0	1	478	0
chr16	84044661	84045497	H1_polyA+.74841	0	.	84044661	84045497	0	1	836	0
chr16	84045351	84057942	BT474_Burge_Thompson.21592	0	+	84045351	84057942	0	2	3411,24	0,12567
chr16	84045855	84047473	B_cells_Cheung.126152	0	.	84045855	84047473	0	1	1618	0
chr16	84046453	84047616	H1_polyA+.74843	0	.	84046453	84047616	0	1	1163	0
chr16	84046671	84047041	prostate_carcinoma.63288	0	.	84046671	84047041	0	1	370	0
chr16	84047108	84047788	prostate_carcinoma.63289	0	.	84047108	84047788	0	1	680	0
chr16	84052027	84052547	prostate_carcinoma.63292	0	.	84052027	84052547	0	1	520	0
chr16	84052053	84052492	A549_Myers.52172	0	.	84052053	84052492	0	1	439	0
chr16	84053530	84054235	ZR751_Thompson.15481	0	.	84053530	84054235	0	1	705	0
chr16	84053569	84054257	prostate_carcinoma.63293	0	.	84053569	84054257	0	1	688	0
chr16	84053640	84054431	A549_Myers.52174	0	.	84053640	84054431	0	1	791	0
chr16	84053850	84054341	brain_AmbionMAQC.28060	0	.	84053850	84054341	0	1	491	0
chr16	84054570	84055379	H1_polyA+.74845	0	.	84054570	84055379	0	1	809	0
chr16	84055690	84056981	prostate_carcinoma.63294	0	.	84055690	84056981	0	1	1291	0
chr16	84056309	84057651	K562.28625	0	.	84056309	84057651	0	1	1342	0
chr16	84057572	84057987	B_cells_Cheung.126153	0	.	84057572	84057987	0	1	415	0
chr16	84058016	84059179	K562.28626	0	.	84058016	84059179	0	1	1163	0
chr16	84058270	84059380	prostate_carcinoma.63295	0	.	84058270	84059380	0	1	1110	0
chr16	84058622	84059271	H1_polyA+.74847	0	.	84058622	84059271	0	1	649	0
chr16	84058721	84059056	ovary_Raymond.167981	0	.	84058721	84059056	0	1	335	0
chr16	84059228	84068647	prostate_carcinoma.63296	0	-	84059228	84068647	0	2	12,540	0,8879
chr16	84062896	84063738	H1_polyA+.74850	0	.	84062896	84063738	0	1	842	0
chr16	84063462	84064467	prostate_carcinoma.63297	0	.	84063462	84064467	0	1	1005	0
chr16	84063531	84064281	T47D_Burge_Thompson.18543	0	.	84063531	84064281	0	1	750	0
chr16	84064341	84064966	BT474_Burge_Thompson.21597	0	.	84064341	84064966	0	1	625	0
chr16	84064383	84064935	T47D_Burge_Thompson.18544	0	.	84064383	84064935	0	1	552	0
chr16	84065028	84065888	prostate_carcinoma.63298	0	.	84065028	84065888	0	1	860	0
chr16	84065084	84065876	H1_polyA+.74851	0	.	84065084	84065876	0	1	792	0
chr16	84065102	84065923	T47D_Burge_Thompson.18545	0	.	84065102	84065923	0	1	821	0
chr16	84065119	84065736	B_Cells_Pritchard.2148927	0	.	84065119	84065736	0	1	617	0
chr16	84065330	84065966	BT474_Burge_Thompson.21598	0	.	84065330	84065966	0	1	636	0
chr16	84065605	84066855	K562.28627	0	.	84065605	84066855	0	1	1250	0
chr16	84065924	84068678	H1_polyA+.74852	0	.	84065924	84068678	0	1	2754	0
chr16	84066073	84066663	T47D_Burge_Thompson.18546	0	.	84066073	84066663	0	1	590	0
chr16	84067767	84078941	BT474_Burge_Thompson.21600	0	+	84067767	84078941	0	2	93,242	0,10932
chr16	84069563	84070198	H1_polyA+.74854	0	.	84069563	84070198	0	1	635	0
chr16	84070500	84072068	H1_polyA+.74855	0	.	84070500	84072068	0	1	1568	0
chr16	84070772	84073948	prostate_carcinoma.63300	0	.	84070772	84073948	0	1	3176	0
chr16	84071337	84081890	T47D_Burge_Thompson.18551	0	-	84071337	84081890	0	2	970,2200	0,8353
chr16	84072442	84073585	BT474_Burge_Thompson.21603	0	.	84072442	84073585	0	1	1143	0
chr16	84072482	84072935	H1_polyA+.74856	0	.	84072482	84072935	0	1	453	0
chr16	84072703	84073585	prostate_normal.37146	0	.	84072703	84073585	0	1	882	0
chr16	84072977	84073977	H1_polyA+.74857	0	.	84072977	84073977	0	1	1000	0
chr16	84073243	84073838	T47D_Burge_Thompson.18555	0	.	84073243	84073838	0	1	595	0
chr16	84074206	84076358	prostate_carcinoma.63303	0	.	84074206	84076358	0	1	2152	0
chr16	84074858	84075527	K562.28630	0	.	84074858	84075527	0	1	669	0
chr16	84075054	84075445	H1_polyA+.74859	0	.	84075054	84075445	0	1	391	0
chr16	84076127	84076742	BT474_Burge_Thompson.21607	0	.	84076127	84076742	0	1	615	0
chr16	84076213	84076945	H1_polyA+.74860	0	.	84076213	84076945	0	1	732	0
chr16	84076389	84076976	T47D_Burge_Thompson.18559	0	.	84076389	84076976	0	1	587	0
chr16	84076938	84077613	prostate_normal.37147	0	.	84076938	84077613	0	1	675	0
chr16	84077067	84077650	H1_polyA+.74861	0	.	84077067	84077650	0	1	583	0
chr16	84077072	84077787	prostate_carcinoma.63304	0	.	84077072	84077787	0	1	715	0
chr16	84077117	84077488	BT474_Burge_Thompson.21608	0	.	84077117	84077488	0	1	371	0
chr16	84077130	84077595	T47D_Burge_Thompson.18560	0	.	84077130	84077595	0	1	465	0
chr16	84077456	84078520	K562.28631	0	.	84077456	84078520	0	1	1064	0
chr16	84078853	84080307	H1_polyA+.74863	0	.	84078853	84080307	0	1	1454	0
chr16	84079133	84080684	prostate_carcinoma.63305	0	.	84079133	84080684	0	1	1551	0
chr16	84079297	84080240	prostate_normal.37149	0	.	84079297	84080240	0	1	943	0
chr16	84079499	84080665	K562.28632	0	.	84079499	84080665	0	1	1166	0
chr16	84079636	84081890	T47D_Burge_Thompson.18552	0	.	84079636	84081890	0	1	2254	0
chr16	84079661	84081893	BT474_Burge_Thompson.21595	0	.	84079661	84081893	0	1	2232	0
chr16	84080475	84081696	H1_polyA+.74864	0	.	84080475	84081696	0	1	1221	0
chr16	84081554	84081887	A549_Myers.52177	0	.	84081554	84081887	0	1	333	0
chr16	84082381	84083052	T47D_Burge_Thompson.18562	0	.	84082381	84083052	0	1	671	0
chr16	84082882	84083623	H1_polyA+.74865	0	.	84082882	84083623	0	1	741	0
chr16	84086779	84096985	prostate_carcinoma.63309	0	+	84086779	84096985	0	2	16,4292	0,5914
chr16	84086922	84087630	H1_polyA+.74866	0	.	84086922	84087630	0	1	708	0
chr16	84087035	84087992	T47D_Burge_Thompson.18567	0	.	84087035	84087992	0	1	957	0
chr16	84087091	84087659	BT474_Burge_Thompson.21614	0	.	84087091	84087659	0	1	568	0
chr16	84087188	84087660	A549_Myers.52180	0	.	84087188	84087660	0	1	472	0
chr16	84087409	84087997	prostate_carcinoma.63310	0	.	84087409	84087997	0	1	588	0
chr16	84087659	84087978	BT474_Burge_Thompson.21615	0	.	84087659	84087978	0	1	319	0
chr16	84087700	84089664	prostate_normal.37150	0	+	84087700	84089664	0	2	204,514	0,1450
chr16	84088330	84090401	prostate_carcinoma.63311	0	.	84088330	84090401	0	1	2071	0
chr16	84089087	84089948	T47D_Burge_Thompson.18569	0	.	84089087	84089948	0	1	861	0
chr16	84089138	84089519	B_Cells_Pritchard.2149049	0	-	84089138	84089519	0	1	381	0
chr16	84089160	84090403	K562.28634	0	.	84089160	84090403	0	1	1243	0
chr16	84089172	84090369	H1_polyA+.74868	0	.	84089172	84090369	0	1	1197	0
chr16	84089181	84089734	BT474_Burge_Thompson.21610	0	.	84089181	84089734	0	1	553	0
chr16	84089723	84090361	liver_polyA+.87307	0	.	84089723	84090361	0	1	638	0
chr16	84089784	84090416	BT474_Burge_Thompson.21616	0	.	84089784	84090416	0	1	632	0
chr16	84090043	84090396	B_Cells_Pritchard.2149055	0	-	84090043	84090396	0	1	353	0
chr16	84090055	84090409	T47D_Burge_Thompson.18570	0	.	84090055	84090409	0	1	354	0
chr16	84090684	84093025	H1_polyA+.74869	0	.	84090684	84093025	0	1	2341	0
chr16	84090813	84092086	prostate_carcinoma.63312	0	.	84090813	84092086	0	1	1273	0
chr16	84091355	84091974	T47D_Burge_Thompson.18571	0	.	84091355	84091974	0	1	619	0
chr16	84093013	84093644	BT474_Burge_Thompson.21618	0	.	84093013	84093644	0	1	631	0
chr16	84093029	84093409	liver_polyA+.87308	0	.	84093029	84093409	0	1	380	0
chr16	84093732	84094565	T47D_Burge_Thompson.18573	0	.	84093732	84094565	0	1	833	0
chr16	84093819	84094655	B_Cells_Pritchard.2149075	0	.	84093819	84094655	0	1	836	0
chr16	84096976	84097277	B_cells_Cheung.126156	0	.	84096976	84097277	0	1	301	0
chr16	84097482	84098319	T47D_Burge_Thompson.18576	0	.	84097482	84098319	0	1	837	0
chr16	84097755	84098518	prostate_carcinoma.63314	0	.	84097755	84098518	0	1	763	0
chr16	84097913	84098256	BT474_Burge_Thompson.21622	0	.	84097913	84098256	0	1	343	0
chr16	84099434	84099800	T47D_Burge_Thompson.18578	0	.	84099434	84099800	0	1	366	0
chr16	84099864	84100640	prostate_normal.37153	0	.	84099864	84100640	0	1	776	0
chr16	84099929	84101319	T47D_Burge_Thompson.18579	0	.	84099929	84101319	0	1	1390	0
chr16	84100238	84101036	H1_polyA+.74874	0	.	84100238	84101036	0	1	798	0
chr16	84100371	84101382	K562.28636	0	.	84100371	84101382	0	1	1011	0
chr16	84100433	84101159	prostate_carcinoma.63316	0	.	84100433	84101159	0	1	726	0
chr16	84100493	84100853	A549_Myers.52183	0	.	84100493	84100853	0	1	360	0
chr16	84101401	84102082	prostate_carcinoma.63317	0	.	84101401	84102082	0	1	681	0
chr16	84102689	84104955	prostate_carcinoma.63318	0	.	84102689	84104955	0	1	2266	0
chr16	84102796	84107911	liver_polyA+.87311	0	-	84102796	84107911	0	3	160,122,347	0,358,4768
chr16	84103611	84104791	melanoma_Garraway_short_term_cultures.43528	0	.	84103611	84104791	0	1	1180	0
chr16	84103930	84104781	H1_polyA+.74876	0	.	84103930	84104781	0	1	851	0
chr16	84103951	84105132	K562.28639	0	.	84103951	84105132	0	1	1181	0
chr16	84105308	84105688	BT474_Burge_Thompson.21626	0	.	84105308	84105688	0	1	380	0
chr16	84105504	84107158	A549_Myers.52184	0	.	84105504	84107158	0	1	1654	0
chr16	84105596	84107516	prostate_carcinoma.63319	0	.	84105596	84107516	0	1	1920	0
chr16	84105635	84106981	H1_polyA+.74877	0	.	84105635	84106981	0	1	1346	0
chr16	84105766	84106327	prostate_normal.37154	0	.	84105766	84106327	0	1	561	0
chr16	84106647	84107386	HepG2_Caltech_ENCODE.23579	0	.	84106647	84107386	0	1	739	0
chr16	84106679	84107164	BT474_Burge_Thompson.21627	0	.	84106679	84107164	0	1	485	0
chr16	84106765	84107280	B_Cells_Pritchard.2149159	0	.	84106765	84107280	0	1	515	0
chr16	84106766	84107216	breast_Burge.25375	0	.	84106766	84107216	0	1	450	0
chr16	84107276	84107633	B_cells_Cheung.126157	0	.	84107276	84107633	0	1	357	0
chr16	84108188	84108500	A549_Myers.52185	0	.	84108188	84108500	0	1	312	0
chr16	84108887	84110837	prostate_carcinoma.63321	0	-	84108887	84110837	0	2	1441,126	0,1824
chr16	84109241	84110434	K562.28652	0	.	84109241	84110434	0	1	1193	0
chr16	84109525	84110425	H1_polyA+.74879	0	.	84109525	84110425	0	1	900	0
chr16	84109761	84110120	T47D_Burge_Thompson.18587	0	.	84109761	84110120	0	1	359	0
chr16	84110674	84111295	K562.28653	0	.	84110674	84111295	0	1	621	0
chr16	84111811	84113282	K562.28654	0	.	84111811	84113282	0	1	1471	0
chr16	84112028	84114779	prostate_carcinoma.63322	0	-	84112028	84114779	0	2	325,1190	0,1561
chr16	84112299	84113006	H1_polyA+.74882	0	.	84112299	84113006	0	1	707	0
chr16	84113537	84114779	prostate_carcinoma.63323	0	.	84113537	84114779	0	1	1242	0
chr16	84113695	84114907	HepG2_Caltech_ENCODE.23580	0	.	84113695	84114907	0	1	1212	0
chr16	84113724	84114494	BT474_Burge_Thompson.21630	0	.	84113724	84114494	0	1	770	0
chr16	84113733	84114914	H1_polyA+.74883	0	.	84113733	84114914	0	1	1181	0
chr16	84113753	84114584	prostate_normal.37155	0	.	84113753	84114584	0	1	831	0
chr16	84113959	84114652	K562.28651	0	.	84113959	84114652	0	1	693	0
chr16	84114042	84114562	T47D_Burge_Thompson.18592	0	.	84114042	84114562	0	1	520	0
chr16	84114042	84114494	brain_AmbionMAQC.28061	0	.	84114042	84114494	0	1	452	0
chr16	84114093	84114820	A549_Myers.52186	0	.	84114093	84114820	0	1	727	0
chr16	84115550	84116157	BT474_Burge_Thompson.21632	0	.	84115550	84116157	0	1	607	0
chr16	84117210	84117989	prostate_carcinoma.63324	0	.	84117210	84117989	0	1	779	0
chr16	84117348	84118056	BT474_Burge_Thompson.21634	0	.	84117348	84118056	0	1	708	0
chr16	84117409	84117853	A549_Myers.52187	0	.	84117409	84117853	0	1	444	0
chr16	84117440	84117982	T47D_Burge_Thompson.18593	0	.	84117440	84117982	0	1	542	0
chr16	84118480	84119508	H1_polyA+.74884	0	.	84118480	84119508	0	1	1028	0
chr16	84118625	84119526	BT474_Burge_Thompson.21635	0	.	84118625	84119526	0	1	901	0
chr16	84121355	84122143	H1_polyA+.74886	0	.	84121355	84122143	0	1	788	0
chr16	84121697	84122178	prostate_carcinoma.63326	0	.	84121697	84122178	0	1	481	0
chr16	84121777	84122409	K562.28655	0	.	84121777	84122409	0	1	632	0
chr16	84122259	84123786	H1_polyA+.74887	0	.	84122259	84123786	0	1	1527	0
chr16	84122760	84124297	HepG2_Caltech_ENCODE.23581	0	.	84122760	84124297	0	1	1537	0
chr16	84124442	84125223	HepG2_Caltech_ENCODE.23582	0	.	84124442	84125223	0	1	781	0
chr16	84125491	84126184	H1_polyA+.74888	0	.	84125491	84126184	0	1	693	0
chr16	84125509	84127025	HepG2_Caltech_ENCODE.23583	0	.	84125509	84127025	0	1	1516	0
chr16	84125649	84126823	BT474_Burge_Thompson.21639	0	.	84125649	84126823	0	1	1174	0
chr16	84125656	84126132	K562.28657	0	.	84125656	84126132	0	1	476	0
chr16	84125806	84126424	T47D_Burge_Thompson.18599	0	.	84125806	84126424	0	1	618	0
chr16	84127168	84127652	T47D_Burge_Thompson.18601	0	.	84127168	84127652	0	1	484	0
chr16	84127603	84128354	prostate_carcinoma.63327	0	.	84127603	84128354	0	1	751	0
chr16	84127873	84128580	T47D_Burge_Thompson.18602	0	.	84127873	84128580	0	1	707	0
chr16	84128947	84129279	T47D_Burge_Thompson.18603	0	.	84128947	84129279	0	1	332	0
chr16	84132821	84133608	T47D_Burge_Thompson.18606	0	.	84132821	84133608	0	1	787	0
chr16	84135272	84136127	T47D_Burge_Thompson.18608	0	.	84135272	84136127	0	1	855	0
chr16	84135534	84136846	HepG2_Caltech_ENCODE.23584	0	.	84135534	84136846	0	1	1312	0
chr16	84140575	84141403	BT474_Burge_Thompson.21641	0	.	84140575	84141403	0	1	828	0
chr16	84140630	84141875	B_cells_Cheung.126160	0	.	84140630	84141875	0	1	1245	0
chr16	84140704	84141782	prostate_carcinoma.63331	0	.	84140704	84141782	0	1	1078	0
chr16	84140890	84141875	H1_polyA+.74891	0	.	84140890	84141875	0	1	985	0
chr16	84141094	84141793	K562.28793	0	.	84141094	84141793	0	1	699	0
chr16	84141721	84143143	B_Cells_Pritchard.2149247	0	.	84141721	84143143	0	1	1422	0
chr16	84142008	84143163	B_cells_Cheung.126161	0	.	84142008	84143163	0	1	1155	0
chr16	84142349	84143109	prostate_carcinoma.63332	0	.	84142349	84143109	0	1	760	0
chr16	84144150	84145362	CD4_Plagnol_activated.40780	0	.	84144150	84145362	0	1	1212	0
chr16	84144178	84144595	T47D_Burge_Thompson.18610	0	.	84144178	84144595	0	1	417	0
chr16	84144278	84145351	H1_polyA+.74893	0	.	84144278	84145351	0	1	1073	0
chr16	84144280	84145160	BT20_Thompson.13663	0	.	84144280	84145160	0	1	880	0
chr16	84144339	84145813	A549_Myers.52193	0	.	84144339	84145813	0	1	1474	0
chr16	84144669	84145821	CD4_Plagnol_resting.39768	0	.	84144669	84145821	0	1	1152	0
chr16	84145156	84145894	REMC_LuminalBreast.64540	0	.	84145156	84145894	0	1	738	0
chr16	84145209	84145816	melanoma_Garraway_short_term_cultures.43531	0	.	84145209	84145816	0	1	607	0
chr16	84145389	84146047	MB435_Burge.26805	0	.	84145389	84146047	0	1	658	0
chr16	84145427	84145845	H1_polyA+.74894	0	.	84145427	84145845	0	1	418	0
chr16	84145473	84145978	CD4_Snyder.48593	0	.	84145473	84145978	0	1	505	0
chr16	84145896	84146422	prostate_normal.37157	0	.	84145896	84146422	0	1	526	0
chr16	84145896	84146629	A549_Myers.52194	0	.	84145896	84146629	0	1	733	0
chr16	84145930	84146479	breast_Burge.25378	0	.	84145930	84146479	0	1	549	0
chr16	84145931	84146694	CD4_Plagnol_resting.39769	0	.	84145931	84146694	0	1	763	0
chr16	84145932	84147251	adipose_Burge.24531	0	.	84145932	84147251	0	1	1319	0
chr16	84145946	84146479	liver_polyA+.87317	0	.	84145946	84146479	0	1	533	0
chr16	84146007	84146348	brain_AmbionMAQC.28062	0	.	84146007	84146348	0	1	341	0
chr16	84146047	84146487	MDAMB231_Thompson.14232	0	.	84146047	84146487	0	1	440	0
chr16	84146320	84147078	testes_Burge.33590	0	-	84146320	84147078	0	2	389,308	0,450
chr16	84146381	84146738	HME_Burge.25635	0	.	84146381	84146738	0	1	357	0
chr16	84146708	84147237	MDAMB231_Thompson.14233	0	.	84146708	84147237	0	1	529	0
chr16	84146773	84147125	A549_Myers.52196	0	.	84146773	84147125	0	1	352	0
chr16	84146784	84147142	brain_AmbionMAQC.28063	0	.	84146784	84147142	0	1	358	0
chr16	84349891	84351237	B_Cells_Pritchard.2149451	0	.	84349891	84351237	0	1	1346	0
chr16	84355606	84360048	B_cells_Cheung.126355	0	.	84355606	84360048	0	1	4442	0
chr16	84355787	84360015	B_Cells_Pritchard.2149523	0	+	84355787	84360015	0	1	4228	0
chr16	84358067	84360007	CD4_Plagnol_activated.40820	0	.	84358067	84360007	0	1	1940	0
chr16	84358072	84360143	H1_polyA+.74428	0	.	84358072	84360143	0	1	2071	0
chr16	84358347	84359995	prostate_carcinoma.63605	0	.	84358347	84359995	0	1	1648	0
chr16	84358431	84360206	HepG2_Caltech_ENCODE.23544	0	.	84358431	84360206	0	1	1775	0
chr16	84359618	84360137	REMC_LuminalBreast.64448	0	.	84359618	84360137	0	1	519	0
chr16	84402863	84403470	B_Cells_Pritchard.2149573	0	.	84402863	84403470	0	1	607	0
chr16	84412476	84412928	A549_Myers.52269	0	.	84412476	84412928	0	1	452	0
chr16	84417984	84418341	A549_Myers.52270	0	.	84417984	84418341	0	1	357	0
chr16	84420279	84426075	pHIT000116078	0	-	84420279	84426075	0	2	186,149	0,5647
chr16	84432743	84435169	liver_polyA+.87396	0	.	84432743	84435169	0	1	2426	0
chr16	84432770	84435231	HepG2_Caltech_ENCODE.23551	0	.	84432770	84435231	0	1	2461	0
chr16	84434743	84435071	B_cells_Cheung.126245	0	.	84434743	84435071	0	1	328	0
chr16	84437198	84438351	HepG2_Caltech_ENCODE.23553	0	.	84437198	84438351	0	1	1153	0
chr16	84437377	84438533	liver_polyA+.87400	0	.	84437377	84438533	0	1	1156	0
chr16	84438742	84439146	HepG2_Caltech_ENCODE.23554	0	.	84438742	84439146	0	1	404	0
chr16	84438777	84439271	B_cells_Cheung.126246	0	.	84438777	84439271	0	1	494	0
chr16	84438792	84439152	B_Cells_Pritchard.2149663	0	-	84438792	84439152	0	1	360	0
chr16	84450627	84453119	HIT000047057	0	-	84450627	84453119	0	1	2492	0
chr16	84450791	84451157	B_cells_Cheung.126247	0	.	84450791	84451157	0	1	366	0
chr16	84453216	84454233	B_cells_Cheung.126248	0	.	84453216	84454233	0	1	1017	0
chr16	84484911	84487975	MIP101.43763	0	.	84484911	84487975	0	1	3064	0
chr16	84524271	84525006	B_cells_Cheung.126473	0	.	84524271	84525006	0	1	735	0
chr16	84526147	84528854	B_Cells_Pritchard.2149885	0	+	84526147	84528854	0	1	2707	0
chr16	84526402	84527026	CD4_Plagnol_activated.40843	0	.	84526402	84527026	0	1	624	0
chr16	84528962	84532482	B_cells_Cheung.126304	0	.	84528962	84532482	0	1	3520	0
chr16	84532613	84534056	B_cells_Cheung.126305	0	.	84532613	84534056	0	1	1443	0
chr16	84534164	84540459	B_cells_Cheung.126306	0	.	84534164	84540459	0	1	6295	0
chr16	84534164	84540459	B_cells_Cheung.126307	0	-	84534164	84540459	0	2	5346,391	0,5904
chr16	84534386	84542639	B_Cells_Pritchard.2149895	0	-	84534386	84542639	0	2	6003,2127	0,6126
chr16	84550549	84551178	B_Cells_Pritchard.2149933	0	.	84550549	84551178	0	1	629	0
chr16	84552979	84554050	B_Cells_Pritchard.2149943	0	.	84552979	84554050	0	1	1071	0
chr16	84560538	84565238	pHIT000027781	0	+	84560538	84565238	0	2	50,1492	0,3208
chr16	84561002	84561567	B_Cells_Pritchard.2149981	0	.	84561002	84561567	0	1	565	0
chr16	84567661	84568150	B_Cells_Pritchard.2149999	0	.	84567661	84568150	0	1	489	0
chr16	84568606	84569712	B_Cells_Pritchard.2150003	0	.	84568606	84569712	0	1	1106	0
chr16	84568767	84569313	B_cells_Cheung.126312	0	.	84568767	84569313	0	1	546	0
chr16	84569378	84570534	B_cells_Cheung.126313	0	.	84569378	84570534	0	1	1156	0
chr16	84569727	84570405	prostate_carcinoma.63397	0	.	84569727	84570405	0	1	678	0
chr16	84569872	84576652	B_Cells_Pritchard.2150007	0	-	84569872	84576652	0	1	6780	0
chr16	84569872	84576652	B_Cells_Pritchard.2150005	0	+	84569872	84576652	0	2	2807,3955	0,2825
chr16	84570586	84576544	B_cells_Cheung.126314	0	-	84570586	84576544	0	2	5120,649	0,5309
chr16	84570586	84576544	B_cells_Cheung.126315	0	.	84570586	84576544	0	1	5958	0
chr16	84573013	84575321	prostate_carcinoma.63399	0	.	84573013	84575321	0	1	2308	0
chr16	84577802	84589584	B_Cells_Pritchard.2150015	0	+	84577802	84589584	0	2	2801,3919	0,7863
chr16	84578734	84587223	B_cells_Cheung.126316	0	.	84578734	84587223	0	1	8489	0
chr16	84582161	84584458	B_Cells_Pritchard.2150021	0	-	84582161	84584458	0	4	1085,125,137,159	0,1418,1804,2138
chr16	84587910	84591628	B_cells_Cheung.126318	0	.	84587910	84591628	0	1	3718	0
chr16	84623354	84623828	B_Cells_Pritchard.2150135	0	.	84623354	84623828	0	1	474	0
chr16	84626733	84627526	HIT000078721	0	+	84626733	84627526	0	1	793	0
chr16	84635251	84635607	A549_Myers.52294	0	.	84635251	84635607	0	1	356	0
chr16	84655096	84655482	A549_Myers.52295	0	.	84655096	84655482	0	1	386	0
chr16	84669090	84669535	A549_Myers.52298	0	.	84669090	84669535	0	1	445	0
chr16	84672497	84680633	HIT000306094	0	-	84672497	84680633	0	2	7283,165	0,7971
chr16	84673126	84680633	Rinn_00024306	0	-	84673126	84680633	0	2	6654,166	0,7341
chr16	84673127	84680633	ENST00000505352	0	-	84673127	84680633	0	2	6653,165	0,7341
chr16	84683436	84686839	A549_Myers.52299	0	-	84683436	84686839	0	2	63,466	0,2937
chr16	84783861	84786785	prostate_carcinoma.63404	0	.	84783861	84786785	0	1	2924	0
chr16	84783943	84785539	testes_Burge.33630	0	.	84783943	84785539	0	1	1596	0
chr16	84784112	84785164	prostate_normal.37209	0	.	84784112	84785164	0	1	1052	0
chr16	84787356	84790777	testes_Burge.33635	0	+	84787356	84790777	0	4	163,153,15,159	0,2710,3175,3262
chr16	84833527	84833968	A549_Myers.52302	0	.	84833527	84833968	0	1	441	0
chr16	84843552	84844105	B_Cells_Pritchard.2150765	0	.	84843552	84844105	0	1	553	0
chr16	84843602	84844114	BT474_Burge_Thompson.20984	0	.	84843602	84844114	0	1	512	0
chr16	84869763	84870304	HeLa_polyA+_Chen.23044	0	.	84869763	84870304	0	1	541	0
chr16	84870408	84870776	HeLa_polyA+_Chen.23042	0	.	84870408	84870776	0	1	368	0
chr16	84875817	84876815	HeLa_polyA+_Chen.23049	0	.	84875817	84876815	0	1	998	0
chr16	84878046	84878682	HeLa_polyA+_Chen.23050	0	.	84878046	84878682	0	1	636	0
chr16	84879592	84880325	HeLa_polyA+_Chen.23051	0	.	84879592	84880325	0	1	733	0
chr16	84938619	84938930	testes_Burge.33642	0	.	84938619	84938930	0	1	311	0
chr16	84944520	84946972	REMC_BreastStem.32675	0	.	84944520	84946972	0	1	2452	0
chr16	84962208	84962700	A549_Myers.52307	0	.	84962208	84962700	0	1	492	0
chr16	84972642	84974686	HeLa_polyA+_Chen.23054	0	+	84972642	84974686	0	2	1419,52	0,1992
chr16	84978829	84979725	HeLa_polyA-_Chen.12510	0	.	84978829	84979725	0	1	896	0
chr16	84984775	84985535	HeLa_polyA+_Chen.23057	0	.	84984775	84985535	0	1	760	0
chr16	85025947	85034402	pHIT000116086	0	-	85025947	85034402	0	2	278,112	0,8343
chr16	85044972	85045851	prostate_carcinoma.63411	0	.	85044972	85045851	0	1	879	0
chr16	85051410	85090341	pHIT000027782	0	+	85051410	85090341	0	6	93,39,116,169,118,335	0,3033,3290,6407,34543,38596
chr16	85051410	85099491	pHIT000089944	0	+	85051410	85099491	0	5	128,39,169,118,200	0,3033,6407,34543,47881
chr16	85051410	85062942	pHIT000116087	0	+	85051410	85062942	0	4	128,169,171,69	0,6407,9083,11463
chr16	85052769	85054779	prostate_carcinoma.63417	0	.	85052769	85054779	0	1	2010	0
chr16	85054443	85099491	pHIT000116091	0	+	85054443	85099491	0	5	39,116,169,118,200	0,257,3374,31510,44848
chr16	85054932	85055887	HeLa_polyA+_Chen.23058	0	.	85054932	85055887	0	1	955	0
chr16	85056373	85057071	prostate_normal.37215	0	.	85056373	85057071	0	1	698	0
chr16	85056739	85057504	prostate_carcinoma.63420	0	.	85056739	85057504	0	1	765	0
chr16	85059053	85059637	prostate_carcinoma.63421	0	.	85059053	85059637	0	1	584	0
chr16	85064402	85065173	HeLa_polyA+_Chen.23060	0	.	85064402	85065173	0	1	771	0
chr16	85065630	85099967	Rinn_00024240	0	-	85065630	85099967	0	4	2676,167,53,207	0,3361,4180,34130
chr16	85065790	85099992	BT20_Thompson.13676	0	-	85065790	85099992	0	3	2516,3292,231	0,13029,33971
chr16	85070259	85074751	prostate_carcinoma.63419	0	.	85070259	85074751	0	1	4492	0
chr16	85071246	85077053	Rinn_00025087	0	-	85071246	85077053	0	2	1561,316	0,5491
chr16	85071876	85072723	HeLa_polyA+_Chen.23114	0	.	85071876	85072723	0	1	847	0
chr16	85072851	85076394	HeLa_polyA+_Chen.23116	0	.	85072851	85076394	0	1	3543	0
chr16	85076632	85078003	prostate_carcinoma.63423	0	.	85076632	85078003	0	1	1371	0
chr16	85078770	85099967	Rinn_00024241	0	-	85078770	85099967	0	4	2069,251,153,207	0,2599,3188,20990
chr16	85078771	85099967	NR_036444	0	-	85078771	85099967	0	4	2068,250,152,206	0,2599,3188,20990
chr16	85078793	85081030	HIT000028652	0	-	85078793	85081030	0	1	2237	0
chr16	85078801	85081647	HIT000054894	0	-	85078801	85081647	0	1	2846	0
chr16	85078807	85080810	colon_Burge.23915	0	.	85078807	85080810	0	1	2003	0
chr16	85078810	85100191	prostate_normal.37217	0	-	85078810	85100191	0	2	3301,430	0,20951
chr16	85078814	85081358	HIT000022167	0	+	85078814	85081358	0	1	2544	0
chr16	85078815	85089673	Rinn_00024771	0	-	85078815	85089673	0	4	2024,251,153,144	0,2554,3143,10714
chr16	85078818	85089617	Rinn_00024772	0	-	85078818	85089617	0	2	3293,88	0,10711
chr16	85078823	85081986	Rinn_00024307	0	-	85078823	85081986	0	2	2797,28	0,3135
chr16	85078824	85081986	ENST00000499142	0	-	85078824	85081986	0	2	2796,27	0,3135
chr16	85078843	85099942	ENST00000499071	0	-	85078843	85099942	0	4	1996,250,152,181	0,2527,3116,20918
chr16	85078843	85099942	HIT000284493	0	-	85078843	85099942	0	4	1996,250,152,181	0,2527,3116,20918
chr16	85078903	85079520	brain_AmbionMAQC.28040	0	.	85078903	85079520	0	1	617	0
chr16	85093073	85093544	lung_Raymond.60328	0	.	85093073	85093544	0	1	471	0
chr16	85093087	85093642	IMR90_UCSD_REMC.32258	0	+	85093087	85093642	0	1	555	0
chr16	85096314	85096749	IMR90_UCSD_REMC.32261	0	+	85096314	85096749	0	1	435	0
chr16	85100957	85101440	IMR90_UCSD_REMC.32189	0	-	85100957	85101440	0	1	483	0
chr16	85107121	85107472	pHIT000116090	0	-	85107121	85107472	0	1	351	0
chr16	85107121	85110401	pHIT000089946	0	-	85107121	85110401	0	2	365,169	0,3111
chr16	85107167	85107574	A549_Myers.52319	0	.	85107167	85107574	0	1	407	0
chr16	85108827	85109267	A549_Myers.52320	0	.	85108827	85109267	0	1	440	0
chr16	85110116	85110576	A549_Myers.52321	0	.	85110116	85110576	0	1	460	0
chr16	85110703	85111321	A549_Myers.52322	0	.	85110703	85111321	0	1	618	0
chr16	85112898	85115857	REMC_MyoepithelialBreast.59693	0	.	85112898	85115857	0	1	2959	0
chr16	85113080	85116253	REMC_LuminalBreast.64453	0	.	85113080	85116253	0	1	3173	0
chr16	85113667	85114574	HeLa_polyA+_Chen.23091	0	.	85113667	85114574	0	1	907	0
chr16	85114059	85115750	BT20_Thompson.13675	0	.	85114059	85115750	0	1	1691	0
chr16	85118320	85119017	HeLa_polyA+_Chen.23092	0	.	85118320	85119017	0	1	697	0
chr16	85118530	85118923	B_cells_Cheung.126324	0	.	85118530	85118923	0	1	393	0
chr16	85118544	85118925	MDAMB231_Thompson.14237	0	.	85118544	85118925	0	1	381	0
chr16	85119056	85120050	prostate_normal.37227	0	.	85119056	85120050	0	1	994	0
chr16	85119107	85120050	BT474_Burge_Thompson.21006	0	.	85119107	85120050	0	1	943	0
chr16	85119119	85120089	brain_AmbionMAQC.28049	0	.	85119119	85120089	0	1	970	0
chr16	85146424	85148406	HIT000011855	0	+	85146424	85148406	0	1	1982	0
chr16	85146426	85148406	NR_026674	0	+	85146426	85148406	0	1	1980	0
chr16	85147735	85148290	B_Cells_Pritchard.2151705	0	+	85147735	85148290	0	1	555	0
chr16	85174909	85175517	REMC_MyoepithelialBreast.59701	0	.	85174909	85175517	0	1	608	0
chr16	85175256	85175556	A549_Myers.52350	0	.	85175256	85175556	0	1	300	0
chr16	85176099	85178772	REMC_MyoepithelialBreast.59702	0	.	85176099	85178772	0	1	2673	0
chr16	85186295	85188746	HIT000005503	0	+	85186295	85188746	0	1	2451	0
chr16	85294166	85294512	A549_Myers.52353	0	.	85294166	85294512	0	1	346	0
chr16	85307310	85333009	REMC_LuminalBreast.64476	0	+	85307310	85333009	0	6	839,145,84,193,3780,35	0,2056,18622,20368,21206,25664
chr16	85307978	85325983	Rinn_00024497	0	+	85307978	85325983	0	3	171,146,52	0,1387,17953
chr16	85308045	85309773	prostate_normal.37230	0	+	85308045	85309773	0	2	104,407	0,1321
chr16	85309373	85332227	REMC_MyoepithelialBreast.59705	0	+	85309373	85332227	0	3	138,84,3711	0,16559,19143
chr16	85311724	85333587	REMC_LuminalBreast.64477	0	.	85311724	85333587	0	1	21863	0
chr16	85324313	85331572	Rinn_00024498	0	+	85324313	85331572	0	3	146,85,3057	0,1618,4202
chr16	85329760	85336631	H1_polyA+.74388	0	+	85329760	85336631	0	3	1737,164,214	0,3528,6657
chr16	85329760	85332195	H1_polyA+.74389	0	.	85329760	85332195	0	1	2435	0
chr16	85329765	85330122	prostate_normal.37236	0	.	85329765	85330122	0	1	357	0
chr16	85330079	85330457	prostate_carcinoma.63441	0	.	85330079	85330457	0	1	378	0
chr16	85337485	85338280	H1_polyA+.74390	0	.	85337485	85338280	0	1	795	0
chr16	85337597	85338305	REMC_LuminalBreast.64484	0	.	85337597	85338305	0	1	708	0
chr16	85338629	85349073	REMC_LuminalBreast.64485	0	.	85338629	85349073	0	1	10444	0
chr16	85342925	85344928	REMC_MyoepithelialBreast.59707	0	.	85342925	85344928	0	1	2003	0
chr16	85364698	85366356	REMC_LuminalBreast.64494	0	.	85364698	85366356	0	1	1658	0
chr16	85368648	85369736	REMC_LuminalBreast.64465	0	.	85368648	85369736	0	1	1088	0
chr16	85377502	85378584	REMC_LuminalBreast.64467	0	.	85377502	85378584	0	1	1082	0
chr16	85383748	85385612	REMC_LuminalBreast.64468	0	.	85383748	85385612	0	1	1864	0
chr16	85420296	85421808	REMC_LuminalBreast.64471	0	.	85420296	85421808	0	1	1512	0
chr16	85427970	85430150	REMC_BreastStem.32682	0	.	85427970	85430150	0	1	2180	0
chr16	85428860	85429887	REMC_MyoepithelialBreast.59708	0	.	85428860	85429887	0	1	1027	0
chr16	85434809	85435644	REMC_BreastStem.32683	0	.	85434809	85435644	0	1	835	0
chr16	85437409	85441636	REMC_BreastStem.32684	0	.	85437409	85441636	0	1	4227	0
chr16	85438340	85439373	REMC_MyoepithelialBreast.59709	0	.	85438340	85439373	0	1	1033	0
chr16	85450870	85452240	REMC_BreastStem.32686	0	.	85450870	85452240	0	1	1370	0
chr16	85452533	85453793	REMC_BreastStem.32687	0	.	85452533	85453793	0	1	1260	0
chr16	85454115	85456078	REMC_BreastStem.32688	0	.	85454115	85456078	0	1	1963	0
chr16	85467985	85473511	REMC_BreastStem.32689	0	.	85467985	85473511	0	1	5526	0
chr16	85468042	85468834	melanoma_Garraway_short_term_cultures.43592	0	.	85468042	85468834	0	1	792	0
chr16	85468304	85469307	REMC_MyoepithelialBreast.59712	0	.	85468304	85469307	0	1	1003	0
chr16	85471216	85471991	REMC_MyoepithelialBreast.59714	0	.	85471216	85471991	0	1	775	0
chr16	85471961	85473056	REMC_LuminalBreast.64472	0	.	85471961	85473056	0	1	1095	0
chr16	85472192	85473513	REMC_MyoepithelialBreast.59715	0	.	85472192	85473513	0	1	1321	0
chr16	85496898	85499760	B_cells_Cheung.126329	0	+	85496898	85499760	0	2	91,485	0,2377
chr16	85499253	85499707	B_Cells_Pritchard.2152381	0	.	85499253	85499707	0	1	454	0
chr16	85509897	85512824	REMC_BreastStem.32691	0	.	85509897	85512824	0	1	2927	0
chr16	85510262	85511828	REMC_MyoepithelialBreast.59716	0	.	85510262	85511828	0	1	1566	0
chr16	85510792	85511758	REMC_LuminalBreast.64473	0	.	85510792	85511758	0	1	966	0
chr16	85514705	85515530	REMC_BreastStem.32692	0	.	85514705	85515530	0	1	825	0
chr16	85515827	85517527	REMC_BreastStem.32693	0	.	85515827	85517527	0	1	1700	0
chr16	85609484	85609940	A549_Myers.52369	0	.	85609484	85609940	0	1	456	0
chr16	85644044	85644762	khalil_870	0	.	85644044	85644762	0	1	718	0
chr16	85648890	85655098	HIT000048066	0	+	85648890	85655098	0	3	2716,127,1240	0,3274,4968
chr16	85654275	85662069	B_Cells_Pritchard.2152833	0	+	85654275	85662069	0	2	135,505	0,7289
chr16	85671107	85672498	MIP101.43777	0	.	85671107	85672498	0	1	1391	0
chr16	85673949	85675035	REMC_MyoepithelialBreast.59720	0	.	85673949	85675035	0	1	1086	0
chr16	85709047	85727179	pHIT000116095	0	-	85709047	85727179	0	3	142,193,112	0,7756,18020
chr16	85709047	85736546	pHIT000116096	0	-	85709047	85736546	0	4	142,193,112,306	0,7756,18020,27193
chr16	85715427	85715730	brain_AmbionMAQC.28071	0	.	85715427	85715730	0	1	303	0
chr16	85731291	85732201	MIP101.43780	0	.	85731291	85732201	0	1	910	0
chr16	85731295	85732109	REMC_BreastStem.32694	0	.	85731295	85732109	0	1	814	0
chr16	85731338	85732201	H1_polyA+.74395	0	.	85731338	85732201	0	1	863	0
chr16	85731349	85732134	B_Cells_Pritchard.2153139	0	.	85731349	85732134	0	1	785	0
chr16	85731365	85732013	B_cells_Cheung.126336	0	.	85731365	85732013	0	1	648	0
chr16	85731393	85732172	brain_AmbionMAQC.28072	0	.	85731393	85732172	0	1	779	0
chr16	85790412	85790901	B_Cells_Pritchard.2153369	0	.	85790412	85790901	0	1	489	0
chr16	85790430	85790867	A549_Myers.52380	0	.	85790430	85790867	0	1	437	0
chr16	85800754	85801960	H1_polyA+.74396	0	.	85800754	85801960	0	1	1206	0
chr16	85810579	85811464	K562.28695	0	.	85810579	85811464	0	1	885	0
chr16	85810583	85811075	A549_Myers.52384	0	.	85810583	85811075	0	1	492	0
chr16	85827059	85827764	A549_Myers.52385	0	.	85827059	85827764	0	1	705	0
chr16	85831387	85833099	H1_polyA+.74397	0	.	85831387	85833099	0	1	1712	0
chr16	85864022	85864643	B_Cells_Pritchard.2153671	0	.	85864022	85864643	0	1	621	0
chr16	85865155	85865657	B_Cells_Pritchard.2153673	0	.	85865155	85865657	0	1	502	0
chr16	85868648	85869528	BT474_Burge_Thompson.21009	0	.	85868648	85869528	0	1	880	0
chr16	85868651	85869016	B_Cells_Pritchard.2153691	0	.	85868651	85869016	0	1	365	0
chr16	85869850	85870360	A549_Myers.52387	0	.	85869850	85870360	0	1	510	0
chr16	85880176	85881125	H1_polyA+.74398	0	.	85880176	85881125	0	1	949	0
chr16	85885123	85886392	MIP101.43783	0	.	85885123	85886392	0	1	1269	0
chr16	85889543	85891076	H1_polyA+.74399	0	.	85889543	85891076	0	1	1533	0
chr16	86093086	86094151	H1_polyA+.74468	0	.	86093086	86094151	0	1	1065	0
chr16	86093386	86094207	prostate_carcinoma.63485	0	.	86093386	86094207	0	1	821	0
chr16	86093393	86093832	B_Cells_Pritchard.2154161	0	.	86093393	86093832	0	1	439	0
chr16	86093431	86094337	BT474_Burge_Thompson.21014	0	.	86093431	86094337	0	1	906	0
chr16	86140828	86141510	A549_Myers.52434	0	.	86140828	86141510	0	1	682	0
chr16	86141891	86142196	A549_Myers.52435	0	.	86141891	86142196	0	1	305	0
chr16	86154705	86155145	A549_Myers.52437	0	.	86154705	86155145	0	1	440	0
chr16	86155267	86155941	BT474_Burge_Thompson.21015	0	.	86155267	86155941	0	1	674	0
chr16	86155471	86155925	MCF7_Burge_Thompson.19613	0	.	86155471	86155925	0	1	454	0
chr16	86173546	86174292	A549_Myers.52441	0	.	86173546	86174292	0	1	746	0
chr16	86179980	86180437	A549_Myers.52445	0	.	86179980	86180437	0	1	457	0
chr16	86182050	86182509	A549_Myers.52446	0	.	86182050	86182509	0	1	459	0
chr16	86361141	86361736	B_cells_Cheung.126440	0	.	86361141	86361736	0	1	595	0
chr16	86363098	86364168	H1_polyA+.74537	0	.	86363098	86364168	0	1	1070	0
chr16	86367917	86368417	B_cells_Cheung.126449	0	.	86367917	86368417	0	1	500	0
chr16	86367919	86368549	B_Cells_Pritchard.2154725	0	+	86367919	86368549	0	1	630	0
chr16	86368699	86370910	B_Cells_Pritchard.2154727	0	+	86368699	86370910	0	1	2211	0
chr16	86369424	86370201	HepG2_Caltech_ENCODE.23626	0	.	86369424	86370201	0	1	777	0
chr16	86369588	86370821	B_cells_Cheung.126450	0	.	86369588	86370821	0	1	1233	0
chr16	86369651	86370293	H1_polyA+.74541	0	.	86369651	86370293	0	1	642	0
chr16	86369982	86370657	A549_Myers.52472	0	.	86369982	86370657	0	1	675	0
chr16	86371191	86372073	B_cells_Cheung.126451	0	.	86371191	86372073	0	1	882	0
chr16	86375796	86376863	REMC_LuminalBreast.64528	0	.	86375796	86376863	0	1	1067	0
chr16	86375913	86376798	B_Cells_Pritchard.2154749	0	.	86375913	86376798	0	1	885	0
chr16	86375934	86376457	REMC_BreastStem.32720	0	.	86375934	86376457	0	1	523	0
chr16	86375941	86376859	REMC_MyoepithelialBreast.60137	0	.	86375941	86376859	0	1	918	0
chr16	86376159	86376749	B_cells_Cheung.126452	0	.	86376159	86376749	0	1	590	0
chr16	86376961	86382876	REMC_LuminalBreast.64529	0	.	86376961	86382876	0	1	5915	0
chr16	86378678	86379345	REMC_MyoepithelialBreast.60138	0	.	86378678	86379345	0	1	667	0
chr16	86380465	86382180	REMC_MyoepithelialBreast.60139	0	.	86380465	86382180	0	1	1715	0
chr16	86380548	86381219	B_cells_Cheung.126454	0	.	86380548	86381219	0	1	671	0
chr16	86380558	86382026	B_Cells_Pritchard.2154761	0	.	86380558	86382026	0	1	1468	0
chr16	86382846	86383700	B_Cells_Pritchard.2154765	0	.	86382846	86383700	0	1	854	0
chr16	86388733	86389627	REMC_LuminalBreast.64532	0	.	86388733	86389627	0	1	894	0
chr16	86391439	86401218	REMC_LuminalBreast.64534	0	.	86391439	86401218	0	1	9779	0
chr16	86393731	86394363	B_cells_Cheung.126462	0	.	86393731	86394363	0	1	632	0
chr16	86393797	86394632	REMC_MyoepithelialBreast.60145	0	.	86393797	86394632	0	1	835	0
chr16	86394913	86396616	B_cells_Cheung.126463	0	.	86394913	86396616	0	1	1703	0
chr16	86395174	86395900	B_Cells_Pritchard.2154843	0	-	86395174	86395900	0	1	726	0
chr16	86395194	86396354	BT474_Burge_Thompson.21017	0	.	86395194	86396354	0	1	1160	0
chr16	86395209	86396309	REMC_MyoepithelialBreast.60146	0	.	86395209	86396309	0	1	1100	0
chr16	86395385	86396315	A549_Myers.52479	0	.	86395385	86396315	0	1	930	0
chr16	86395900	86396452	B_Cells_Pritchard.2154845	0	-	86395900	86396452	0	1	552	0
chr16	86396374	86398260	REMC_MyoepithelialBreast.60147	0	.	86396374	86398260	0	1	1886	0
chr16	86396806	86398301	B_cells_Cheung.126464	0	.	86396806	86398301	0	1	1495	0
chr16	86397077	86398045	BT474_Burge_Thompson.21018	0	.	86397077	86398045	0	1	968	0
chr16	86397303	86397979	REMC_BreastStem.32725	0	.	86397303	86397979	0	1	676	0
chr16	86397323	86401388	B_Cells_Pritchard.2154849	0	-	86397323	86401388	0	2	1376,268	0,3797
chr16	86397711	86398716	A549_Myers.52481	0	.	86397711	86398716	0	1	1005	0
chr16	86398351	86398918	B_cells_Cheung.126465	0	.	86398351	86398918	0	1	567	0
chr16	86398739	86399828	REMC_MyoepithelialBreast.60148	0	.	86398739	86399828	0	1	1089	0
chr16	86399989	86401132	REMC_MyoepithelialBreast.60149	0	.	86399989	86401132	0	1	1143	0
chr16	86400298	86400996	B_cells_Cheung.126467	0	.	86400298	86400996	0	1	698	0
chr16	86400365	86400974	B_Cells_Pritchard.2154861	0	-	86400365	86400974	0	1	609	0
chr16	86400405	86400727	A549_Myers.52482	0	.	86400405	86400727	0	1	322	0
chr16	86403104	86404185	REMC_MyoepithelialBreast.60151	0	.	86403104	86404185	0	1	1081	0
chr16	86403111	86404647	REMC_LuminalBreast.64536	0	.	86403111	86404647	0	1	1536	0
chr16	86405585	86405937	REMC_LuminalBreast.64537	0	.	86405585	86405937	0	1	352	0
chr16	86406663	86407164	B_Cells_Pritchard.2154885	0	.	86406663	86407164	0	1	501	0
chr16	86407513	86410688	REMC_MyoepithelialBreast.60153	0	.	86407513	86410688	0	1	3175	0
chr16	86407910	86408300	REMC_BreastStem.32728	0	.	86407910	86408300	0	1	390	0
chr16	86409444	86410200	REMC_BreastStem.32730	0	.	86409444	86410200	0	1	756	0
chr16	86413245	86416769	REMC_BreastStem.32732	0	.	86413245	86416769	0	1	3524	0
chr16	86413758	86414576	melanoma_Garraway_short_term_cultures.43642	0	.	86413758	86414576	0	1	818	0
chr16	86414169	86414898	H1_polyA+.74474	0	.	86414169	86414898	0	1	729	0
chr16	86414178	86415002	MeWo_Garraway.22780	0	.	86414178	86415002	0	1	824	0
chr16	86415644	86417122	CD4_Plagnol_activated.41318	0	.	86415644	86417122	0	1	1478	0
chr16	86417795	86418564	REMC_BreastStem.32733	0	.	86417795	86418564	0	1	769	0
chr16	86418221	86419650	B_Cells_Pritchard.2156615	0	-	86418221	86419650	0	3	321,108,181	0,379,1248
chr16	86538793	86539801	B_Cells_Pritchard.2155161	0	.	86538793	86539801	0	1	1008	0
chr16	86671472	86672245	CD4_Plagnol_activated.40945	0	.	86671472	86672245	0	1	773	0
chr16	86671473	86672272	H1_polyA+.74587	0	.	86671473	86672272	0	1	799	0
chr16	86673344	86674674	REMC_MyoepithelialBreast.60190	0	.	86673344	86674674	0	1	1330	0
chr16	86673384	86675271	B_Cells_Pritchard.2155495	0	.	86673384	86675271	0	1	1887	0
chr16	86673479	86674758	MIP101.43869	0	.	86673479	86674758	0	1	1279	0
chr16	86673495	86675285	B_cells_Cheung.126532	0	.	86673495	86675285	0	1	1790	0
chr16	86673512	86674838	CD4_Plagnol_resting.39937	0	.	86673512	86674838	0	1	1326	0
chr16	86673529	86674818	H1_polyA+.74589	0	.	86673529	86674818	0	1	1289	0
chr16	86673537	86675122	CD4_Plagnol_activated.40947	0	.	86673537	86675122	0	1	1585	0
chr16	86673620	86674615	REMC_LuminalBreast.64588	0	.	86673620	86674615	0	1	995	0
chr16	86673683	86674505	prostate_carcinoma.63549	0	.	86673683	86674505	0	1	822	0
chr16	86673690	86674401	brain_AmbionMAQC.28122	0	.	86673690	86674401	0	1	711	0
chr16	86675483	86675850	B_Cells_Pritchard.2155497	0	.	86675483	86675850	0	1	367	0
chr16	86675545	86676531	B_cells_Cheung.126533	0	.	86675545	86676531	0	1	986	0
chr16	86676906	86678062	B_cells_Cheung.126534	0	.	86676906	86678062	0	1	1156	0
chr16	86676938	86677608	CD4_Plagnol_activated.40969	0	.	86676938	86677608	0	1	670	0
chr16	86676948	86678947	B_Cells_Pritchard.2155503	0	.	86676948	86678947	0	1	1999	0
chr16	86676951	86677347	CD4_Plagnol_resting.39940	0	.	86676951	86677347	0	1	396	0
chr16	86676955	86677717	REMC_MyoepithelialBreast.60191	0	.	86676955	86677717	0	1	762	0
chr16	86676959	86677961	H1_polyA+.74590	0	.	86676959	86677961	0	1	1002	0
chr16	86678152	86678833	brain_AmbionMAQC.28123	0	.	86678152	86678833	0	1	681	0
chr16	86721831	86722474	B_Cells_Pritchard.2155611	0	.	86721831	86722474	0	1	643	0
chr16	86722585	86723593	B_Cells_Pritchard.2155613	0	.	86722585	86723593	0	1	1008	0
chr16	86768368	86775460	Rinn_00024781	0	-	86768368	86775460	0	4	1385,159,125,11	0,1521,6194,7081
chr16	86768388	86769717	HIT000091220	0	-	86768388	86769717	0	1	1329	0
chr16	86768408	86770371	Rinn_00025093	0	-	86768408	86770371	0	2	1345,482	0,1481
chr16	86768441	86777054	Rinn_00024507	0	+	86768441	86777054	0	2	8510,27	0,8586
chr16	86768482	86777851	Rinn_00024782	0	-	86768482	86777851	0	3	1271,170,674	0,1407,8695
chr16	86770060	86777794	Rinn_00024783	0	-	86770060	86777794	0	3	4627,742,1522	0,5389,6212
chr16	86772369	86776561	Rinn_00024784	0	-	86772369	86776561	0	2	2318,1759	0,2433
chr16	86773926	86777851	Rinn_00024904	0	+	86773926	86777851	0	2	2271,1573	0,2352
chr16	86774071	86777876	HIT000043427	0	+	86774071	86777876	0	2	2120,1603	0,2202
chr16	86775449	86777794	Rinn_00024905	0	+	86775449	86777794	0	2	736,1528	0,817
chr16	86775974	86778110	Rinn_00024508	0	+	86775974	86778110	0	3	223,426,1186	0,304,950
chr16	86776680	86777851	Rinn_00024510	0	+	86776680	86777851	0	2	14,935	0,236
chr16	86776885	86777321	IMR90_UCSD_REMC.32246	0	+	86776885	86777321	0	1	436	0
chr16	86785238	86786190	Rinn_00024511	0	+	86785238	86786190	0	3	380,117,18	0,617,934
chr16	86820496	86821218	REMC_LuminalBreast.64590	0	.	86820496	86821218	0	1	722	0
chr16	86820522	86821435	MDAMB468_Thompson.15365	0	.	86820522	86821435	0	1	913	0
chr16	86820966	86821415	REMC_BreastStem.32749	0	.	86820966	86821415	0	1	449	0
chr16	86821505	86821932	REMC_BreastStem.32750	0	.	86821505	86821932	0	1	427	0
chr16	86821653	86822348	REMC_LuminalBreast.64591	0	.	86821653	86822348	0	1	695	0
chr16	86822744	86823509	REMC_LuminalBreast.64592	0	.	86822744	86823509	0	1	765	0
chr16	86823451	86823792	MDAMB468_Thompson.15367	0	.	86823451	86823792	0	1	341	0
chr16	86826249	86826580	REMC_BreastStem.32754	0	.	86826249	86826580	0	1	331	0
chr16	86832981	86833853	REMC_BreastStem.32758	0	.	86832981	86833853	0	1	872	0
chr16	86833004	86833468	REMC_LuminalBreast.64596	0	.	86833004	86833468	0	1	464	0
chr16	86834065	86835796	REMC_BreastStem.32759	0	.	86834065	86835796	0	1	1731	0
chr16	86834687	86835753	REMC_LuminalBreast.64598	0	.	86834687	86835753	0	1	1066	0
chr16	86836889	86839098	REMC_BreastStem.32761	0	.	86836889	86839098	0	1	2209	0
chr16	86836942	86837441	REMC_LuminalBreast.64600	0	.	86836942	86837441	0	1	499	0
chr16	86846636	86848688	REMC_BreastStem.32767	0	.	86846636	86848688	0	1	2052	0
chr16	86848804	86852729	REMC_BreastStem.32768	0	.	86848804	86852729	0	1	3925	0
chr16	86849651	86852799	REMC_LuminalBreast.64618	0	.	86849651	86852799	0	1	3148	0
chr16	86852883	86853793	REMC_LuminalBreast.64619	0	.	86852883	86853793	0	1	910	0
chr16	86852903	86853834	REMC_BreastStem.32769	0	.	86852903	86853834	0	1	931	0
chr16	86853017	86853538	REMC_MyoepithelialBreast.60199	0	.	86853017	86853538	0	1	521	0
chr16	86853964	86855404	REMC_LuminalBreast.64620	0	.	86853964	86855404	0	1	1440	0
chr16	86853973	86855380	REMC_BreastStem.32770	0	.	86853973	86855380	0	1	1407	0
chr16	86853974	86854527	REMC_MyoepithelialBreast.60200	0	.	86853974	86854527	0	1	553	0
chr16	86854646	86855196	REMC_MyoepithelialBreast.60201	0	.	86854646	86855196	0	1	550	0
chr16	86855526	86856226	REMC_LuminalBreast.64621	0	.	86855526	86856226	0	1	700	0
chr16	86855539	86856217	REMC_BreastStem.32771	0	.	86855539	86856217	0	1	678	0
chr16	86856564	86857084	REMC_LuminalBreast.64622	0	.	86856564	86857084	0	1	520	0
chr16	86857180	86857683	REMC_LuminalBreast.64623	0	.	86857180	86857683	0	1	503	0
chr16	86876358	86877026	A549_Myers.52564	0	.	86876358	86877026	0	1	668	0
chr16	86887434	86888361	A549_Myers.52565	0	.	86887434	86888361	0	1	927	0
chr16	86890190	86891328	khalil_873	0	.	86890190	86891328	0	2	310,263	0,875
chr16	86894748	86897188	REMC_BreastStem.32772	0	.	86894748	86897188	0	1	2440	0
chr16	86896225	86896595	A549_Myers.52567	0	.	86896225	86896595	0	1	370	0
chr16	86896271	86896873	brain_AmbionMAQC.28133	0	.	86896271	86896873	0	1	602	0
chr16	86896302	86897146	prostate_normal.37344	0	.	86896302	86897146	0	1	844	0
chr16	86896303	86897315	prostate_carcinoma.63554	0	.	86896303	86897315	0	1	1012	0
chr16	86896662	86897177	A549_Myers.52568	0	.	86896662	86897177	0	1	515	0
chr16	86896731	86897062	ovary_Raymond.168214	0	.	86896731	86897062	0	1	331	0
chr16	86906248	86906579	A549_Myers.52569	0	.	86906248	86906579	0	1	331	0
chr16	86906644	86907265	A549_Myers.52570	0	.	86906644	86907265	0	1	621	0
chr16	86913767	86914072	A549_Myers.52573	0	.	86913767	86914072	0	1	305	0
chr16	86916337	86916779	A549_Myers.52574	0	.	86916337	86916779	0	1	442	0
chr16	86918081	86918486	A549_Myers.52575	0	.	86918081	86918486	0	1	405	0
chr16	86918813	86919810	A549_Myers.52576	0	.	86918813	86919810	0	1	997	0
chr16	86921451	86922581	REMC_BreastStem.32775	0	.	86921451	86922581	0	1	1130	0
chr16	86921600	86922081	A549_Myers.52578	0	.	86921600	86922081	0	1	481	0
chr16	86923342	86923680	A549_Myers.52579	0	.	86923342	86923680	0	1	338	0
chr16	86923893	86924400	A549_Myers.52580	0	.	86923893	86924400	0	1	507	0
chr16	86924650	86925772	BT20_Thompson.13712	0	.	86924650	86925772	0	1	1122	0
chr16	86925710	86926284	A549_Myers.52582	0	.	86925710	86926284	0	1	574	0
chr16	86925860	86926164	ovary_Raymond.168216	0	.	86925860	86926164	0	1	304	0
chr16	86927606	86928360	BT20_Thompson.13714	0	.	86927606	86928360	0	1	754	0
chr16	86932674	86933197	A549_Myers.52584	0	.	86932674	86933197	0	1	523	0
chr16	86934666	86942179	REMC_BreastStem.32776	0	-	86934666	86942179	0	3	879,240,602	0,1964,6911
chr16	86938319	86942179	REMC_BreastStem.32777	0	.	86938319	86942179	0	1	3860	0
chr16	86939816	86941942	BT20_Thompson.13715	0	.	86939816	86941942	0	1	2126	0
chr16	86940264	86940672	A549_Myers.52587	0	.	86940264	86940672	0	1	408	0
chr16	86940937	86941332	MDAMB468_Thompson.15376	0	.	86940937	86941332	0	1	395	0
chr16	86941325	86941649	A549_Myers.52588	0	.	86941325	86941649	0	1	324	0
chr16	86946380	86946877	A549_Myers.52589	0	.	86946380	86946877	0	1	497	0
chr16	86970904	86971213	A549_Myers.52591	0	.	86970904	86971213	0	1	309	0
chr16	86974195	86975053	A549_Myers.52594	0	.	86974195	86975053	0	1	858	0
chr16	86975175	86978445	A549_Myers.52595	0	+	86975175	86978445	0	2	173,1850	0,1420
chr16	86975724	86976377	A549_Myers.52596	0	.	86975724	86976377	0	1	653	0
chr16	86977064	87018968	pHIT000116122	0	+	86977064	87018968	0	3	99,189,81	0,23234,41823
chr16	86977647	86978325	REMC_LuminalBreast.64651	0	.	86977647	86978325	0	1	678	0
chr16	86977826	86978410	T47D_Burge_Thompson.18341	0	.	86977826	86978410	0	1	584	0
chr16	86978632	86979072	A549_Myers.52597	0	.	86978632	86979072	0	1	440	0
chr16	86979833	86980508	A549_Myers.52598	0	.	86979833	86980508	0	1	675	0
chr16	86980567	86981229	A549_Myers.52599	0	.	86980567	86981229	0	1	662	0
chr16	86981643	86982582	A549_Myers.52601	0	.	86981643	86982582	0	1	939	0
chr16	86982197	86982601	REMC_LuminalBreast.64653	0	.	86982197	86982601	0	1	404	0
chr16	86982778	86987252	REMC_LuminalBreast.64655	0	+	86982778	86987252	0	2	576,681	0,3793
chr16	86982778	86985054	REMC_LuminalBreast.64654	0	.	86982778	86985054	0	1	2276	0
chr16	86983188	86983667	A549_Myers.52602	0	.	86983188	86983667	0	1	479	0
chr16	86983661	86985382	prostate_carcinoma.63555	0	.	86983661	86985382	0	1	1721	0
chr16	86984385	86985244	A549_Myers.52604	0	.	86984385	86985244	0	1	859	0
chr16	86984640	86985019	MDAMB468_Thompson.15404	0	.	86984640	86985019	0	1	379	0
chr16	86985125	86986253	REMC_BreastStem.32779	0	.	86985125	86986253	0	1	1128	0
chr16	86986539	86986929	A549_Myers.52607	0	.	86986539	86986929	0	1	390	0
chr16	86992218	86992521	A549_Myers.52609	0	.	86992218	86992521	0	1	303	0
chr16	86998197	86998847	A549_Myers.52614	0	.	86998197	86998847	0	1	650	0
chr16	86999690	87000846	prostate_carcinoma.63556	0	.	86999690	87000846	0	1	1156	0
chr16	87000176	87000783	A549_Myers.52617	0	.	87000176	87000783	0	1	607	0
chr16	87000996	87001316	A549_Myers.52618	0	.	87000996	87001316	0	1	320	0
chr16	87002427	87003590	A549_Myers.52619	0	.	87002427	87003590	0	1	1163	0
chr16	87007651	87008103	A549_Myers.52624	0	.	87007651	87008103	0	1	452	0
chr16	87012939	87013475	A549_Myers.52625	0	.	87012939	87013475	0	1	536	0
chr16	87013766	87014560	A549_Myers.52626	0	.	87013766	87014560	0	1	794	0
chr16	87017444	87018430	H1_polyA+.74593	0	.	87017444	87018430	0	1	986	0
chr16	87036010	87037604	prostate_carcinoma.63559	0	.	87036010	87037604	0	1	1594	0
chr16	87036757	87037460	prostate_normal.37361	0	.	87036757	87037460	0	1	703	0
chr16	87039496	87040141	prostate_carcinoma.63561	0	.	87039496	87040141	0	1	645	0
chr16	87039857	87041096	REMC_LuminalBreast.64659	0	.	87039857	87041096	0	1	1239	0
chr16	87040237	87041329	prostate_carcinoma.63562	0	.	87040237	87041329	0	1	1092	0
chr16	87040370	87041410	REMC_BreastStem.32783	0	.	87040370	87041410	0	1	1040	0
chr16	87041050	87041361	A549_Myers.52630	0	.	87041050	87041361	0	1	311	0
chr16	87043138	87043491	A549_Myers.52632	0	.	87043138	87043491	0	1	353	0
chr16	87044327	87045379	prostate_carcinoma.63563	0	.	87044327	87045379	0	1	1052	0
chr16	87131766	87132160	A549_Myers.52676	0	.	87131766	87132160	0	1	394	0
chr16	87132222	87132576	A549_Myers.52677	0	.	87132222	87132576	0	1	354	0
chr16	87134613	87134951	A549_Myers.52678	0	.	87134613	87134951	0	1	338	0
chr16	87136140	87136738	A549_Myers.52679	0	.	87136140	87136738	0	1	598	0
chr16	87142703	87143141	CD4_Plagnol_resting.39946	0	.	87142703	87143141	0	1	438	0
chr16	87142738	87143227	B_cells_Cheung.126559	0	.	87142738	87143227	0	1	489	0
chr16	87142812	87143263	B_Cells_Pritchard.2156471	0	.	87142812	87143263	0	1	451	0
chr16	87142820	87143156	CD4_Plagnol_activated.40974	0	.	87142820	87143156	0	1	336	0
chr16	87143735	87144471	B_Cells_Pritchard.2156475	0	.	87143735	87144471	0	1	736	0
chr16	87144019	87144597	CD4_Plagnol_resting.39947	0	.	87144019	87144597	0	1	578	0
chr16	87144027	87144534	CD4_Plagnol_activated.40975	0	.	87144027	87144534	0	1	507	0
chr16	87144058	87144368	B_cells_Cheung.126560	0	.	87144058	87144368	0	1	310	0
chr16	87226039	87229465	pHIT000027819	0	-	87226039	87229465	0	5	113,59,687,40,79	0,1829,2061,2964,3347
chr16	87227060	87228858	B_cells_Cheung.126870	0	.	87227060	87228858	0	1	1798	0
chr16	87227076	87229218	CD4_Plagnol_resting.40092	0	.	87227076	87229218	0	1	2142	0
chr16	87227140	87227831	H1_polyA+.74613	0	.	87227140	87227831	0	1	691	0
chr16	87574905	87578713	B_cells_Cheung.126657	0	-	87574905	87578713	0	2	1209,1880	0,1928
chr16	87574905	87578713	B_cells_Cheung.126656	0	.	87574905	87578713	0	1	3808	0
chr16	87579709	87580666	B_Cells_Pritchard.2156757	0	.	87579709	87580666	0	1	957	0
chr16	87581032	87581364	K562.28891	0	.	87581032	87581364	0	1	332	0
chr16	87581423	87582057	H1_polyA+.74674	0	.	87581423	87582057	0	1	634	0
chr16	87581445	87581942	B_Cells_Pritchard.2156761	0	.	87581445	87581942	0	1	497	0
chr16	87581807	87582282	K562.28892	0	.	87581807	87582282	0	1	475	0
chr16	87582421	87583268	B_Cells_Pritchard.2156763	0	.	87582421	87583268	0	1	847	0
chr16	87583768	87584487	B_Cells_Pritchard.2156767	0	.	87583768	87584487	0	1	719	0
chr16	87585758	87588456	B_Cells_Pritchard.2156777	0	-	87585758	87588456	0	2	1753,145	0,2553
chr16	87594553	87594923	A549_Myers.52810	0	.	87594553	87594923	0	1	370	0
chr16	87595012	87595526	A549_Myers.52811	0	.	87595012	87595526	0	1	514	0
chr16	87599715	87600537	A549_Myers.52812	0	.	87599715	87600537	0	1	822	0
chr16	87607521	87608065	A549_Myers.52813	0	.	87607521	87608065	0	1	544	0
chr16	87610183	87610611	K562.28893	0	.	87610183	87610611	0	1	428	0
chr16	87610678	87611126	K562.28894	0	.	87610678	87611126	0	1	448	0
chr16	87613372	87614119	K562.28896	0	.	87613372	87614119	0	1	747	0
chr16	87617073	87617522	A549_Myers.52816	0	.	87617073	87617522	0	1	449	0
chr16	87627186	87628912	brain_AmbionMAQC.28231	0	.	87627186	87628912	0	1	1726	0
chr16	87627288	87627660	A549_Myers.52817	0	.	87627288	87627660	0	1	372	0
chr16	87627743	87628507	A549_Myers.52818	0	.	87627743	87628507	0	1	764	0
chr16	87628574	87628943	A549_Myers.52819	0	.	87628574	87628943	0	1	369	0
chr16	87629182	87630086	brain_AmbionMAQC.28232	0	.	87629182	87630086	0	1	904	0
chr16	87630626	87633137	brain_AmbionMAQC.28233	0	.	87630626	87633137	0	1	2511	0
chr16	87632335	87634007	MIP101.43899	0	.	87632335	87634007	0	1	1672	0
chr16	87633240	87634028	BT20_Thompson.13775	0	.	87633240	87634028	0	1	788	0
chr16	87633527	87634023	brain_AmbionMAQC.28234	0	.	87633527	87634023	0	1	496	0
chr16	87634307	87635748	MIP101.43900	0	.	87634307	87635748	0	1	1441	0
chr16	87634893	87635726	BT474_Burge_Thompson.21101	0	.	87634893	87635726	0	1	833	0
chr16	87639231	87646853	brain_AmbionMAQC.28238	0	-	87639231	87646853	0	2	2498,484	0,7138
chr16	87639419	87665445	pHIT000116180	0	+	87639419	87665445	0	4	45,179,131,63	0,6868,11906,25963
chr16	87640080	87646874	HIT000011886	0	+	87640080	87646874	0	2	1649,505	0,6289
chr16	87640266	87642434	BT20_Thompson.13777	0	.	87640266	87642434	0	1	2168	0
chr16	87640488	87641741	B_Cells_Pritchard.2156963	0	.	87640488	87641741	0	1	1253	0
chr16	87640955	87645145	MIP101.43904	0	.	87640955	87645145	0	1	4190	0
chr16	87640955	87647751	MIP101.43903	0	-	87640955	87647751	0	2	774,1382	0,5414
chr16	87641020	87641879	prostate_carcinoma.63620	0	.	87641020	87641879	0	1	859	0
chr16	87642205	87644308	prostate_carcinoma.63621	0	.	87642205	87644308	0	1	2103	0
chr16	87642984	87643781	B_Cells_Pritchard.2156967	0	.	87642984	87643781	0	1	797	0
chr16	87644500	87645112	prostate_carcinoma.63622	0	.	87644500	87645112	0	1	612	0
chr16	87644679	87645095	A549_Myers.52823	0	.	87644679	87645095	0	1	416	0
chr16	87645145	87647751	MIP101.43905	0	.	87645145	87647751	0	1	2606	0
chr16	87645245	87645967	prostate_carcinoma.63623	0	.	87645245	87645967	0	1	722	0
chr16	87645628	87646011	A549_Myers.52824	0	.	87645628	87646011	0	1	383	0
chr16	87646041	87646950	B_Cells_Pritchard.2156981	0	.	87646041	87646950	0	1	909	0
chr16	87646125	87647540	A549_Myers.52825	0	+	87646125	87647540	0	2	548,99	0,1316
chr16	87646165	87647000	prostate_carcinoma.63624	0	.	87646165	87647000	0	1	835	0
chr16	87646226	87646846	B_cells_Cheung.126663	0	.	87646226	87646846	0	1	620	0
chr16	87646328	87646853	MCF7_Burge_Thompson.19765	0	.	87646328	87646853	0	1	525	0
chr16	87646336	87646862	T47D_Burge_Thompson.18360	0	.	87646336	87646862	0	1	526	0
chr16	87646348	87646853	brain_AmbionMAQC.28239	0	.	87646348	87646853	0	1	505	0
chr16	87646355	87646856	BT474_Burge_Thompson.21102	0	.	87646355	87646856	0	1	501	0
chr16	87646443	87646854	prostate_normal.37420	0	.	87646443	87646854	0	1	411	0
chr16	87646999	87648185	BT20_Thompson.13776	0	.	87646999	87648185	0	1	1186	0
chr16	87647857	87649087	MIP101.43906	0	.	87647857	87649087	0	1	1230	0
chr16	87648052	87648853	ZR751_Thompson.15564	0	.	87648052	87648853	0	1	801	0
chr16	87648069	87648434	B_Cells_Pritchard.2156989	0	.	87648069	87648434	0	1	365	0
chr16	87648495	87649262	BT20_Thompson.13779	0	.	87648495	87649262	0	1	767	0
chr16	87649337	87651532	BT20_Thompson.13780	0	.	87649337	87651532	0	1	2195	0
chr16	87649393	87650487	prostate_carcinoma.63625	0	.	87649393	87650487	0	1	1094	0
chr16	87649636	87651615	T47D_Burge_Thompson.18361	0	.	87649636	87651615	0	1	1979	0
chr16	87653264	87668425	B_Cells_Pritchard.2157019	0	+	87653264	87668425	0	6	73,6102,596,1408,3435,1157	0,509,7315,8052,9850,14004
chr16	87653812	87668119	B_Cells_Pritchard.2157021	0	-	87653812	87668119	0	5	1767,998,5713,4162,851	0,1849,3275,9144,13456
chr16	87654092	87657827	B_cells_Cheung.126664	0	.	87654092	87657827	0	1	3735	0
chr16	87654092	87657827	B_cells_Cheung.126665	0	-	87654092	87657827	0	2	1446,740	0,2995
chr16	87655817	87656319	A549_Myers.52829	0	.	87655817	87656319	0	1	502	0
chr16	87657950	87662811	B_cells_Cheung.126667	0	+	87657950	87662811	0	2	3225,1495	0,3366
chr16	87657950	87662811	B_cells_Cheung.126666	0	.	87657950	87662811	0	1	4861	0
chr16	87663041	87666546	B_cells_Cheung.126669	0	.	87663041	87666546	0	1	3505	0
chr16	87663041	87668425	B_cells_Cheung.126668	0	+	87663041	87668425	0	3	2641,83,1157	0,2981,4227
chr16	87668841	87671030	B_cells_Cheung.126672	0	.	87668841	87671030	0	1	2189	0
chr16	87668848	87671431	B_Cells_Pritchard.2157025	0	+	87668848	87671431	0	1	2583	0
chr16	87668973	87671431	B_Cells_Pritchard.2157027	0	-	87668973	87671431	0	1	2458	0
chr16	87671247	87677852	pHIT000116182	0	+	87671247	87677852	0	2	710,560	0,6045
chr16	87675350	87675738	B_Cells_Pritchard.2157045	0	.	87675350	87675738	0	1	388	0
chr16	87678793	87679096	A549_Myers.52832	0	.	87678793	87679096	0	1	303	0
chr16	87679215	87679593	A549_Myers.52833	0	.	87679215	87679593	0	1	378	0
chr16	87750792	87751375	A549_Myers.52860	0	.	87750792	87751375	0	1	583	0
chr16	87750835	87751358	prostate_normal.37431	0	.	87750835	87751358	0	1	523	0
chr16	87750927	87751385	CD4_Plagnol_resting.40026	0	.	87750927	87751385	0	1	458	0
chr16	87751118	87752427	H9_polyA+.28758	0	.	87751118	87752427	0	1	1309	0
chr16	87751251	87753106	REMC_LuminalBreast.64750	0	.	87751251	87753106	0	1	1855	0
chr16	87751666	87752067	melanoma_Garraway_short_term_cultures.43729	0	.	87751666	87752067	0	1	401	0
chr16	87751721	87752215	HeLa_polyA+_Chen.23222	0	.	87751721	87752215	0	1	494	0
chr16	87751748	87752100	prostate_normal.37432	0	.	87751748	87752100	0	1	352	0
chr16	87752376	87753408	melanoma_Garraway_short_term_cultures.43730	0	.	87752376	87753408	0	1	1032	0
chr16	87752550	87752950	H9_polyA+.28759	0	.	87752550	87752950	0	1	400	0
chr16	87752554	87753460	CD4_Plagnol_activated.41071	0	.	87752554	87753460	0	1	906	0
chr16	87752641	87752945	A549_Myers.52861	0	.	87752641	87752945	0	1	304	0
chr16	87753038	87753482	H9_polyA+.28760	0	.	87753038	87753482	0	1	444	0
chr16	87754680	87756643	prostate_normal.37434	0	.	87754680	87756643	0	1	1963	0
chr16	87754779	87755290	BT474_Burge_Thompson.21107	0	.	87754779	87755290	0	1	511	0
chr16	87754783	87755647	B_Cells_Pritchard.2157167	0	.	87754783	87755647	0	1	864	0
chr16	87754837	87755623	REMC_LuminalBreast.64751	0	.	87754837	87755623	0	1	786	0
chr16	87754961	87758174	REMC_MyoepithelialBreast.60265	0	.	87754961	87758174	0	1	3213	0
chr16	87755036	87755625	HeLa_polyA+_Chen.23223	0	.	87755036	87755625	0	1	589	0
chr16	87755037	87755685	prostate_carcinoma.63642	0	.	87755037	87755685	0	1	648	0
chr16	87755221	87756773	melanoma_Garraway_short_term_cultures.43731	0	.	87755221	87756773	0	1	1552	0
chr16	87755365	87755852	A549_Myers.52865	0	.	87755365	87755852	0	1	487	0
chr16	87755858	87756569	H9_polyA+.28762	0	.	87755858	87756569	0	1	711	0
chr16	87756042	87756801	MCF7_Burge_Thompson.19776	0	.	87756042	87756801	0	1	759	0
chr16	87756488	87758142	REMC_LuminalBreast.64752	0	.	87756488	87758142	0	1	1654	0
chr16	87796329	87797675	BT474_Burge_Thompson.21109	0	.	87796329	87797675	0	1	1346	0
chr16	87796332	87797500	MCF7_Burge_Thompson.19782	0	.	87796332	87797500	0	1	1168	0
chr16	87796345	87797810	H1_polyA+.74688	0	.	87796345	87797810	0	1	1465	0
chr16	87796381	87797305	H9_polyA+.28768	0	.	87796381	87797305	0	1	924	0
chr16	87796403	87797508	T47D_Burge_Thompson.18372	0	.	87796403	87797508	0	1	1105	0
chr16	87796406	87797380	BT20_Thompson.13782	0	.	87796406	87797380	0	1	974	0
chr16	87796408	87797481	B_cells_Cheung.126701	0	.	87796408	87797481	0	1	1073	0
chr16	87796419	87797302	prostate_normal.37437	0	.	87796419	87797302	0	1	883	0
chr16	87796420	87797729	prostate_carcinoma.63652	0	.	87796420	87797729	0	1	1309	0
chr16	87796422	87797598	MDAMB468_Thompson.15406	0	.	87796422	87797598	0	1	1176	0
chr16	87796570	87797722	REMC_MyoepithelialBreast.60266	0	.	87796570	87797722	0	1	1152	0
chr16	87796594	87798285	REMC_LuminalBreast.64753	0	.	87796594	87798285	0	1	1691	0
chr16	87796614	87797453	ZR751_Thompson.15585	0	.	87796614	87797453	0	1	839	0
chr16	87796694	87797322	B_Cells_Pritchard.2157307	0	+	87796694	87797322	0	1	628	0
chr16	87796724	87797288	brain_AmbionMAQC.28260	0	.	87796724	87797288	0	1	564	0
chr16	87803290	87803609	A549_Myers.52891	0	.	87803290	87803609	0	1	319	0
chr16	87809120	87811562	HIT000022978	0	-	87809120	87811562	0	1	2442	0
chr16	87824497	87826548	MeWo_Garraway.22841	0	.	87824497	87826548	0	1	2051	0
chr16	87824497	87824833	testes_Burge.33853	0	.	87824497	87824833	0	1	336	0
chr16	87825244	87825779	MB435_Burge.26994	0	.	87825244	87825779	0	1	535	0
chr16	87825867	87826209	MB435_Burge.26995	0	.	87825867	87826209	0	1	342	0
chr16	87828219	87831228	REMC_BreastStem.32833	0	.	87828219	87831228	0	1	3009	0
chr16	87828640	87830724	B_cells_Cheung.126711	0	.	87828640	87830724	0	1	2084	0
chr16	87829910	87832054	REMC_MyoepithelialBreast.60271	0	.	87829910	87832054	0	1	2144	0
chr16	87829956	87830692	CD4_Plagnol_activated.41081	0	.	87829956	87830692	0	1	736	0
chr16	87831737	87832892	H1_polyA+.74719	0	.	87831737	87832892	0	1	1155	0
chr16	87831753	87832150	B_cells_Cheung.126714	0	.	87831753	87832150	0	1	397	0
chr16	87834516	87834996	B_cells_Cheung.126717	0	.	87834516	87834996	0	1	480	0
chr16	87836656	87841353	B_Cells_Pritchard.2157763	0	+	87836656	87841353	0	3	1633,1493,532	0,1633,4165
chr16	87836656	87839764	B_Cells_Pritchard.2157765	0	-	87836656	87839764	0	2	274,166	0,2942
chr16	87836675	87837115	REMC_BreastStem.32835	0	.	87836675	87837115	0	1	440	0
chr16	87836726	87837425	HeLa_polyA+_Chen.23231	0	.	87836726	87837425	0	1	699	0
chr16	87836819	87837219	A549_Myers.52901	0	.	87836819	87837219	0	1	400	0
chr16	87839522	87841428	REMC_MyoepithelialBreast.60275	0	.	87839522	87841428	0	1	1906	0
chr16	87839653	87841058	REMC_LuminalBreast.64762	0	.	87839653	87841058	0	1	1405	0
chr16	87839873	87841291	B_cells_Cheung.126722	0	.	87839873	87841291	0	1	1418	0
chr16	87839878	87841358	H1_polyA+.74703	0	.	87839878	87841358	0	1	1480	0
chr16	87840154	87840611	prostate_carcinoma.63672	0	.	87840154	87840611	0	1	457	0
chr16	87840601	87841160	HepG2_Caltech_ENCODE.24215	0	.	87840601	87841160	0	1	559	0
chr16	87840760	87841438	A549_Myers.52903	0	.	87840760	87841438	0	1	678	0
chr16	87842150	87843336	B_Cells_Pritchard.2157775	0	+	87842150	87843336	0	2	515,312	0,874
chr16	87842158	87842957	brain_AmbionMAQC.28280	0	.	87842158	87842957	0	1	799	0
chr16	87842177	87843626	REMC_LuminalBreast.64763	0	.	87842177	87843626	0	1	1449	0
chr16	87842354	87842962	B_cells_Cheung.126723	0	.	87842354	87842962	0	1	608	0
chr16	87842362	87843623	REMC_MyoepithelialBreast.60276	0	.	87842362	87843623	0	1	1261	0
chr16	87842454	87843517	H1_polyA+.74704	0	.	87842454	87843517	0	1	1063	0
chr16	87842474	87842789	A549_Myers.52905	0	.	87842474	87842789	0	1	315	0
chr16	87849368	87852480	REMC_LuminalBreast.64766	0	.	87849368	87852480	0	1	3112	0
chr16	87849368	87852463	REMC_MyoepithelialBreast.60281	0	.	87849368	87852463	0	1	3095	0
chr16	87850359	87851064	B_cells_Cheung.126730	0	.	87850359	87851064	0	1	705	0
chr16	87850385	87850959	brain_AmbionMAQC.28285	0	.	87850385	87850959	0	1	574	0
chr16	87850514	87852498	H1_polyA+.74709	0	.	87850514	87852498	0	1	1984	0
chr16	87850701	87852472	B_Cells_Pritchard.2157785	0	+	87850701	87852472	0	1	1771	0
chr16	87851100	87851756	brain_AmbionMAQC.28279	0	.	87851100	87851756	0	1	656	0
chr16	87851128	87852475	B_cells_Cheung.126731	0	.	87851128	87852475	0	1	1347	0
chr16	87851143	87852457	REMC_BreastStem.32840	0	.	87851143	87852457	0	1	1314	0
chr16	87851858	87852457	melanoma_Garraway_short_term_cultures.43756	0	.	87851858	87852457	0	1	599	0
chr16	87851911	87852456	CD4_Plagnol_activated.41089	0	.	87851911	87852456	0	1	545	0
chr16	87854615	87857339	REMC_LuminalBreast.64768	0	.	87854615	87857339	0	1	2724	0
chr16	87854779	87857988	REMC_MyoepithelialBreast.60284	0	.	87854779	87857988	0	1	3209	0
chr16	87855353	87857144	B_Cells_Pritchard.2157803	0	+	87855353	87857144	0	1	1791	0
chr16	87855380	87857174	REMC_BreastStem.32841	0	.	87855380	87857174	0	1	1794	0
chr16	87855440	87856181	H9_polyA+.28782	0	.	87855440	87856181	0	1	741	0
chr16	87855979	87857200	B_cells_Cheung.126735	0	.	87855979	87857200	0	1	1221	0
chr16	87856046	87856545	brain_AmbionMAQC.28286	0	.	87856046	87856545	0	1	499	0
chr16	87857281	87860035	B_Cells_Pritchard.2157805	0	+	87857281	87860035	0	2	90,1863	0,891
chr16	87857543	87857887	CD4_Plagnol_resting.40044	0	.	87857543	87857887	0	1	344	0
chr16	87858007	87858741	HepG2_Caltech_ENCODE.24219	0	.	87858007	87858741	0	1	734	0
chr16	87858039	87860083	B_cells_Cheung.126737	0	.	87858039	87860083	0	1	2044	0
chr16	87858093	87860011	CD4_Plagnol_activated.41092	0	.	87858093	87860011	0	1	1918	0
chr16	87858108	87859235	REMC_MyoepithelialBreast.60285	0	.	87858108	87859235	0	1	1127	0
chr16	87858341	87859068	brain_AmbionMAQC.28288	0	.	87858341	87859068	0	1	727	0
chr16	87858756	87859965	CD4_Plagnol_resting.40046	0	.	87858756	87859965	0	1	1209	0
chr16	87859171	87860088	REMC_BreastStem.32842	0	.	87859171	87860088	0	1	917	0
chr16	87859180	87859678	brain_AmbionMAQC.28289	0	.	87859180	87859678	0	1	498	0
chr16	87859368	87860102	REMC_MyoepithelialBreast.60286	0	.	87859368	87860102	0	1	734	0
chr16	87859747	87860063	A549_Myers.52908	0	.	87859747	87860063	0	1	316	0
chr16	88614522	88615341	REMC_MyoepithelialBreast.60403	0	.	88614522	88615341	0	1	819	0
chr16	88672092	88672453	MeWo_Garraway.23006	0	.	88672092	88672453	0	1	361	0
chr16	88674697	88676586	melanoma_Garraway_short_term_cultures.43970	0	.	88674697	88676586	0	1	1889	0
chr16	88700112	88700544	REMC_LuminalBreast.64901	0	.	88700112	88700544	0	1	432	0
chr16	88760103	88762706	XR_078660	0	+	88760103	88762706	0	2	381,1047	0,1556
chr16	88761534	88761941	REMC_LuminalBreast.64907	0	.	88761534	88761941	0	1	407	0
chr16	88761596	88763026	H1_polyA+.75038	0	-	88761596	88763026	0	2	77,254	0,1176
chr16	88761831	88763459	ENST00000434625	0	+	88761831	88763459	0	2	951,484	0,1144
chr16	88762212	88763451	REMC_LuminalBreast.64908	0	.	88762212	88763451	0	1	1239	0
chr16	88764988	88765425	REMC_LuminalBreast.64910	0	.	88764988	88765425	0	1	437	0
chr16	88809032	88810353	K562.29046	0	.	88809032	88810353	0	1	1321	0
chr17	44	4054	REMC_LuminalBreast.64915	0	.	44	4054	0	1	4010	0
chr17	1462	1793	breast_Burge.25664	0	.	1462	1793	0	1	331	0
chr17	2615	3228	prostate_normal.37582	0	.	2615	3228	0	1	613	0
chr17	3490	3929	prostate_normal.37583	0	.	3490	3929	0	1	439	0
chr17	47993	49628	Rinn_00025258	0	+	47993	49628	0	2	306,1194	0,441
chr17	49430	58170	khalil_875	0	.	49430	58170	0	4	1147,744,261,2871	0,4356,5137,5869
chr17	51602	54158	REMC_LuminalBreast.64919	0	.	51602	54158	0	1	2556	0
chr17	51683	54178	MCF7_Burge_Thompson.19924	0	.	51683	54178	0	1	2495	0
chr17	52273	56597	MIP101.44150	0	+	52273	56597	0	2	1641,328	0,3996
chr17	52273	54182	MIP101.44149	0	.	52273	54182	0	1	1909	0
chr17	52273	59354	prostate_carcinoma.63834	0	.	52273	59354	0	1	7081	0
chr17	52474	54162	H1_polyA+.75044	0	.	52474	54162	0	1	1688	0
chr17	52818	54175	REMC_MyoepithelialBreast.60418	0	.	52818	54175	0	1	1357	0
chr17	52843	54164	prostate_normal.37590	0	.	52843	54164	0	1	1321	0
chr17	53669	54174	A549_Myers.53113	0	.	53669	54174	0	1	505	0
chr17	53692	54146	brain_AmbionMAQC.28395	0	.	53692	54146	0	1	454	0
chr17	53723	54037	liver_polyA+.88047	0	.	53723	54037	0	1	314	0
chr17	53864	54753	BT474_Burge_Thompson.21201	0	.	53864	54753	0	1	889	0
chr17	54274	56594	MCF7_Burge_Thompson.19925	0	.	54274	56594	0	1	2320	0
chr17	54286	55378	prostate_normal.37591	0	.	54286	55378	0	1	1092	0
chr17	54296	55389	A549_Myers.53114	0	.	54296	55389	0	1	1093	0
chr17	54333	55378	prostate_normal.37592	0	-	54333	55378	0	2	18,902	0,143
chr17	54358	59328	REMC_LuminalBreast.64920	0	.	54358	59328	0	1	4970	0
chr17	54454	55029	B_Cells_Pritchard.2158649	0	.	54454	55029	0	1	575	0
chr17	54517	55126	brain_AmbionMAQC.28397	0	.	54517	55126	0	1	609	0
chr17	54525	55061	liver_polyA+.88048	0	.	54525	55061	0	1	536	0
chr17	54557	55373	MIP101.44154	0	.	54557	55373	0	1	816	0
chr17	54720	55540	H1_polyA+.75045	0	.	54720	55540	0	1	820	0
chr17	54979	55612	HeLa_polyA+_Chen.23355	0	.	54979	55612	0	1	633	0
chr17	55619	56605	melanoma_Garraway_short_term_cultures.43980	0	.	55619	56605	0	1	986	0
chr17	55620	59502	H1_polyA+.75046	0	.	55620	59502	0	1	3882	0
chr17	55674	58348	REMC_MyoepithelialBreast.60419	0	.	55674	58348	0	1	2674	0
chr17	56207	56601	Rinn_00025791	0	+	56207	56601	0	2	77,234	0,160
chr17	56294	59172	prostate_normal.37594	0	-	56294	59172	0	2	326,1862	0,1016
chr17	56318	56642	HeLa_polyA+_Chen.23356	0	.	56318	56642	0	1	324	0
chr17	56724	57300	HeLa_polyA+_Chen.23357	0	.	56724	57300	0	1	576	0
chr17	56738	60729	BT20_Thompson.13861	0	.	56738	60729	0	1	3991	0
chr17	56896	57224	adipose_Burge.24813	0	.	56896	57224	0	1	328	0
chr17	56904	57215	breast_Burge.25671	0	.	56904	57215	0	1	311	0
chr17	59659	61161	H1_polyA+.75047	0	.	59659	61161	0	1	1502	0
chr17	59672	60760	A549_Myers.53119	0	.	59672	60760	0	1	1088	0
chr17	59825	61143	MCF7_Burge_Thompson.19941	0	.	59825	61143	0	1	1318	0
chr17	60121	61114	prostate_normal.37596	0	.	60121	61114	0	1	993	0
chr17	60251	60863	liver_polyA+.88058	0	.	60251	60863	0	1	612	0
chr17	238309	258356	B_Cells_Pritchard.2159173	0	+	238309	258356	0	6	53,175,310,356,4020,1079	0,8190,8542,8924,10383,18968
chr17	248297	252712	B_Cells_Pritchard.2159175	0	-	248297	252712	0	6	222,1023,615,380,1143,901	0,290,1313,1928,2308,3514
chr17	248391	252665	B_cells_Cheung.126912	0	.	248391	252665	0	1	4274	0
chr17	248982	251748	CD4_Plagnol_resting.40213	0	.	248982	251748	0	1	2766	0
chr17	250291	252664	H1_polyA+.75053	0	.	250291	252664	0	1	2373	0
chr17	250786	251713	CD4_Plagnol_activated.41253	0	.	250786	251713	0	1	927	0
chr17	251839	252660	CD4_Plagnol_resting.40214	0	.	251839	252660	0	1	821	0
chr17	251840	252718	CD4_Plagnol_activated.41254	0	.	251840	252718	0	1	878	0
chr17	252090	252446	melanoma_Garraway_short_term_cultures.43981	0	.	252090	252446	0	1	356	0
chr17	344135	352444	REMC_LuminalBreast.65001	0	.	344135	352444	0	1	8309	0
chr17	344556	345522	brain_AmbionMAQC.28408	0	.	344556	345522	0	1	966	0
chr17	348391	352502	REMC_MyoepithelialBreast.60437	0	.	348391	352502	0	1	4111	0
chr17	352848	353961	B_cells_Cheung.126925	0	.	352848	353961	0	1	1113	0
chr17	567381	569466	REMC_MyoepithelialBreast.60441	0	.	567381	569466	0	1	2085	0
chr17	567404	568523	HepG2_Caltech_ENCODE.23865	0	.	567404	568523	0	1	1119	0
chr17	567429	568472	REMC_LuminalBreast.65064	0	.	567429	568472	0	1	1043	0
chr17	567448	568509	B_cells_Cheung.126983	0	.	567448	568509	0	1	1061	0
chr17	567456	567916	brain_AmbionMAQC.28542	0	.	567456	567916	0	1	460	0
chr17	567457	568510	H1_polyA+.75101	0	.	567457	568510	0	1	1053	0
chr17	567479	568492	B_Cells_Pritchard.2159783	0	+	567479	568492	0	1	1013	0
chr17	568547	572409	REMC_LuminalBreast.65161	0	.	568547	572409	0	1	3862	0
chr17	568779	572344	HepG2_Caltech_ENCODE.23866	0	.	568779	572344	0	1	3565	0
chr17	569762	570814	B_cells_Cheung.126985	0	.	569762	570814	0	1	1052	0
chr17	570095	572372	H1_polyA+.75103	0	.	570095	572372	0	1	2277	0
chr17	570119	570778	brain_AmbionMAQC.28546	0	.	570119	570778	0	1	659	0
chr17	570135	570800	prostate_carcinoma.64265	0	.	570135	570800	0	1	665	0
chr17	570140	570813	REMC_MyoepithelialBreast.60442	0	.	570140	570813	0	1	673	0
chr17	570168	570799	prostate_normal.37658	0	.	570168	570799	0	1	631	0
chr17	570190	572410	melanoma_Garraway_short_term_cultures.44012	0	.	570190	572410	0	1	2220	0
chr17	570192	571767	MeWo_Garraway.23016	0	.	570192	571767	0	1	1575	0
chr17	570515	571717	REMC_BreastStem.33026	0	.	570515	571717	0	1	1202	0
chr17	572666	577508	B_Cells_Pritchard.2159787	0	-	572666	577508	0	2	96,1281	0,3561
chr17	575614	577506	REMC_BreastStem.33027	0	.	575614	577506	0	1	1892	0
chr17	575627	577514	B_cells_Cheung.126991	0	.	575627	577514	0	1	1887	0
chr17	575645	577530	H1_polyA+.75108	0	.	575645	577530	0	1	1885	0
chr17	575692	577056	HepG2_Caltech_ENCODE.23867	0	.	575692	577056	0	1	1364	0
chr17	576141	577325	REMC_LuminalBreast.65164	0	.	576141	577325	0	1	1184	0
chr17	576156	577195	melanoma_Garraway_short_term_cultures.44014	0	.	576156	577195	0	1	1039	0
chr17	576171	577206	MIP101.44231	0	.	576171	577206	0	1	1035	0
chr17	576175	577364	REMC_MyoepithelialBreast.60444	0	.	576175	577364	0	1	1189	0
chr17	576186	577212	prostate_normal.37665	0	.	576186	577212	0	1	1026	0
chr17	576323	576895	A549_Myers.53405	0	.	576323	576895	0	1	572	0
chr17	577984	580098	B_cells_Cheung.126992	0	.	577984	580098	0	1	2114	0
chr17	578006	580100	H1_polyA+.75109	0	.	578006	580100	0	1	2094	0
chr17	578007	580091	B_Cells_Pritchard.2159795	0	-	578007	580091	0	1	2084	0
chr17	578008	580060	melanoma_Garraway_short_term_cultures.44015	0	.	578008	580060	0	1	2052	0
chr17	578047	579268	REMC_MyoepithelialBreast.60445	0	.	578047	579268	0	1	1221	0
chr17	578069	580065	HepG2_Caltech_ENCODE.23868	0	.	578069	580065	0	1	1996	0
chr17	578415	580109	REMC_BreastStem.33028	0	.	578415	580109	0	1	1694	0
chr17	578447	580100	REMC_LuminalBreast.65166	0	.	578447	580100	0	1	1653	0
chr17	580327	581561	H1_polyA+.75104	0	.	580327	581561	0	1	1234	0
chr17	580328	581508	melanoma_Garraway_short_term_cultures.44016	0	.	580328	581508	0	1	1180	0
chr17	580329	581536	B_cells_Cheung.126993	0	.	580329	581536	0	1	1207	0
chr17	580345	581515	MIP101.44232	0	.	580345	581515	0	1	1170	0
chr17	580345	581528	B_Cells_Pritchard.2159797	0	.	580345	581528	0	1	1183	0
chr17	580352	581577	HepG2_Caltech_ENCODE.23869	0	.	580352	581577	0	1	1225	0
chr17	580384	581526	MeWo_Garraway.23017	0	.	580384	581526	0	1	1142	0
chr17	580564	581052	NEC_from_H9.47996	0	.	580564	581052	0	1	488	0
chr17	581095	581530	brain_AmbionMAQC.28551	0	.	581095	581530	0	1	435	0
chr17	646054	648237	HIT000018668	0	+	646054	648237	0	1	2183	0
chr17	646234	647439	HepG2_Caltech_ENCODE.23881	0	.	646234	647439	0	1	1205	0
chr17	646387	647861	H9_polyA+.28972	0	.	646387	647861	0	1	1474	0
chr17	646496	647110	B_cells_Cheung.127008	0	.	646496	647110	0	1	614	0
chr17	647030	647736	brain_AmbionMAQC.28432	0	.	647030	647736	0	1	706	0
chr17	647154	647537	A549_Myers.53275	0	.	647154	647537	0	1	383	0
chr17	837674	838456	melanoma_Garraway_short_term_cultures.44041	0	.	837674	838456	0	1	782	0
chr17	837685	838897	brain_AmbionMAQC.28450	0	.	837685	838897	0	1	1212	0
chr17	837864	838379	A549_Myers.53299	0	.	837864	838379	0	1	515	0
chr17	845199	845555	B_cells_Cheung.127035	0	.	845199	845555	0	1	356	0
chr17	1079401	1079770	prostate_normal.37759	0	.	1079401	1079770	0	1	369	0
chr17	1103780	1104198	A549_Myers.53374	0	.	1103780	1104198	0	1	418	0
chr17	1103810	1104215	MIP101.44340	0	.	1103810	1104215	0	1	405	0
chr17	1109330	1109821	A549_Myers.53376	0	.	1109330	1109821	0	1	491	0
chr17	1116615	1117844	B_Cells_Pritchard.2160735	0	+	1116615	1117844	0	1	1229	0
chr17	1116615	1118100	B_cells_Cheung.127123	0	.	1116615	1118100	0	1	1485	0
chr17	1117211	1118338	H1_polyA+.75181	0	.	1117211	1118338	0	1	1127	0
chr17	1117215	1117841	prostate_carcinoma.64217	0	.	1117215	1117841	0	1	626	0
chr17	1117216	1117797	MIP101.44342	0	.	1117216	1117797	0	1	581	0
chr17	1118149	1118645	A549_Myers.53380	0	.	1118149	1118645	0	1	496	0
chr17	1118177	1118936	B_cells_Cheung.127124	0	.	1118177	1118936	0	1	759	0
chr17	1125523	1125908	BT474_Burge_Thompson.21254	0	.	1125523	1125908	0	1	385	0
chr17	1154559	1155405	REMC_MyoepithelialBreast.60598	0	.	1154559	1155405	0	1	846	0
chr17	1162290	1163307	REMC_MyoepithelialBreast.60600	0	.	1162290	1163307	0	1	1017	0
chr17	1163511	1164341	REMC_MyoepithelialBreast.60601	0	.	1163511	1164341	0	1	830	0
chr17	1166208	1166623	REMC_MyoepithelialBreast.60603	0	.	1166208	1166623	0	1	415	0
chr17	1167667	1168973	REMC_MyoepithelialBreast.60604	0	.	1167667	1168973	0	1	1306	0
chr17	1169029	1170950	REMC_MyoepithelialBreast.60605	0	.	1169029	1170950	0	1	1921	0
chr17	1177947	1178723	REMC_LuminalBreast.64993	0	.	1177947	1178723	0	1	776	0
chr17	1178163	1181064	REMC_MyoepithelialBreast.60611	0	.	1178163	1181064	0	1	2901	0
chr17	1178976	1179555	pHIT000116287	0	+	1178976	1179555	0	1	579	0
chr17	1179126	1179555	pHIT000028005	0	+	1179126	1179555	0	1	429	0
chr17	1181372	1182184	REMC_LuminalBreast.64995	0	.	1181372	1182184	0	1	812	0
chr17	1181612	1182259	REMC_MyoepithelialBreast.60612	0	.	1181612	1182259	0	1	647	0
chr17	1184072	1185399	REMC_MyoepithelialBreast.60614	0	.	1184072	1185399	0	1	1327	0
chr17	1254038	1257779	REMC_LuminalBreast.65340	0	.	1254038	1257779	0	1	3741	0
chr17	1256498	1257796	REMC_MyoepithelialBreast.60704	0	.	1256498	1257796	0	1	1298	0
chr17	1256502	1257227	B_cells_Cheung.127157	0	.	1256502	1257227	0	1	725	0
chr17	1256551	1257731	REMC_BreastStem.33100	0	.	1256551	1257731	0	1	1180	0
chr17	1256555	1257194	H1_polyA+.75618	0	.	1256555	1257194	0	1	639	0
chr17	1257975	1258989	REMC_LuminalBreast.65341	0	.	1257975	1258989	0	1	1014	0
chr17	1258002	1258951	REMC_MyoepithelialBreast.60705	0	.	1258002	1258951	0	1	949	0
chr17	1259601	1267868	REMC_MyoepithelialBreast.60706	0	.	1259601	1267868	0	1	8267	0
chr17	1259692	1269296	REMC_LuminalBreast.65343	0	.	1259692	1269296	0	1	9604	0
chr17	1260741	1266510	REMC_BreastStem.33102	0	.	1260741	1266510	0	1	5769	0
chr17	1262259	1263137	B_cells_Cheung.127165	0	.	1262259	1263137	0	1	878	0
chr17	1262384	1263165	H1_polyA+.75620	0	.	1262384	1263165	0	1	781	0
chr17	1262544	1262969	CD4_Plagnol_activated.41387	0	.	1262544	1262969	0	1	425	0
chr17	1264146	1265372	H1_polyA+.75622	0	.	1264146	1265372	0	1	1226	0
chr17	1266289	1267039	B_cells_Cheung.127169	0	.	1266289	1267039	0	1	750	0
chr17	1266381	1267527	H1_polyA+.75624	0	.	1266381	1267527	0	1	1146	0
chr17	1266504	1267050	CD4_Plagnol_activated.41507	0	.	1266504	1267050	0	1	546	0
chr17	1266675	1267673	REMC_BreastStem.33103	0	.	1266675	1267673	0	1	998	0
chr17	1267997	1269292	REMC_MyoepithelialBreast.60703	0	.	1267997	1269292	0	1	1295	0
chr17	1268054	1268709	melanoma_Garraway_short_term_cultures.44112	0	.	1268054	1268709	0	1	655	0
chr17	1311185	1311648	liver_polyA+.88529	0	.	1311185	1311648	0	1	463	0
chr17	1312362	1313128	CD4_Plagnol_resting.40412	0	.	1312362	1313128	0	1	766	0
chr17	1312439	1313141	brain_AmbionMAQC.28498	0	.	1312439	1313141	0	1	702	0
chr17	1312532	1313054	MeWo_Garraway.23159	0	.	1312532	1313054	0	1	522	0
chr17	1312787	1313095	CD4_Plagnol_activated.41537	0	.	1312787	1313095	0	1	308	0
chr17	1415679	1417493	REMC_LuminalBreast.65114	0	.	1415679	1417493	0	1	1814	0
chr17	1416614	1417135	B_cells_Cheung.128252	0	.	1416614	1417135	0	1	521	0
chr17	1416648	1417003	skeletal_muscle_Raymond.64769	0	.	1416648	1417003	0	1	355	0
chr17	1419349	1419737	testes_Burge.34103	0	.	1419349	1419737	0	1	388	0
chr17	1421006	1421839	MDAMB231_Thompson.14409	0	.	1421006	1421839	0	1	833	0
chr17	1422459	1423308	H1_polyA+.75329	0	.	1422459	1423308	0	1	849	0
chr17	1540594	1542390	REMC_LuminalBreast.65157	0	.	1540594	1542390	0	1	1796	0
chr17	1541570	1544059	REMC_BreastStem.33105	0	.	1541570	1544059	0	1	2489	0
chr17	1544898	1546714	REMC_LuminalBreast.65159	0	.	1544898	1546714	0	1	1816	0
chr17	1544903	1546174	REMC_BreastStem.33106	0	.	1544903	1546174	0	1	1271	0
chr17	1544914	1545260	B_cells_Cheung.127257	0	.	1544914	1545260	0	1	346	0
chr17	1544921	1545271	REMC_MyoepithelialBreast.60733	0	.	1544921	1545271	0	1	350	0
chr17	1544946	1545314	B_Cells_Pritchard.2163083	0	+	1544946	1545314	0	1	368	0
chr17	1876038	1876790	REMC_BreastStem.33150	0	.	1876038	1876790	0	1	752	0
chr17	1900662	1901056	prostate_carcinoma.64460	0	.	1900662	1901056	0	1	394	0
chr17	1900665	1901056	REMC_LuminalBreast.65326	0	.	1900665	1901056	0	1	391	0
chr17	1900942	1901309	A549_Myers.53568	0	.	1900942	1901309	0	1	367	0
chr17	1901448	1902448	HeLa_polyA+_Chen.23487	0	.	1901448	1902448	0	1	1000	0
chr17	1901509	1902396	CD4_Plagnol_activated.41545	0	.	1901509	1902396	0	1	887	0
chr17	1903064	1903792	REMC_MyoepithelialBreast.60755	0	.	1903064	1903792	0	1	728	0
chr17	1903081	1903836	REMC_LuminalBreast.65308	0	.	1903081	1903836	0	1	755	0
chr17	1903104	1903622	B_Cells_Pritchard.2162593	0	.	1903104	1903622	0	1	518	0
chr17	1903119	1903780	HeLa_polyA+_Chen.23488	0	.	1903119	1903780	0	1	661	0
chr17	1903140	1903688	prostate_carcinoma.64461	0	.	1903140	1903688	0	1	548	0
chr17	1903683	1904059	A549_Myers.53570	0	.	1903683	1904059	0	1	376	0
chr17	2232107	2232889	melanoma_Garraway_short_term_cultures.44262	0	.	2232107	2232889	0	1	782	0
chr17	2232228	2232609	A549_Myers.53741	0	.	2232228	2232609	0	1	381	0
chr17	2252440	2254187	REMC_MyoepithelialBreast.60850	0	.	2252440	2254187	0	1	1747	0
chr17	2364579	2364924	B_cells_Cheung.127366	0	.	2364579	2364924	0	1	345	0
chr17	2565890	2566398	H1_polyA+.75678	0	.	2565890	2566398	0	1	508	0
chr17	2565897	2566430	B_cells_Cheung.127423	0	.	2565897	2566430	0	1	533	0
chr17	2566665	2567609	B_cells_Cheung.127425	0	.	2566665	2567609	0	1	944	0
chr17	2567792	2568729	B_cells_Cheung.127426	0	.	2567792	2568729	0	1	937	0
chr17	2567893	2568479	brain_AmbionMAQC.28601	0	.	2567893	2568479	0	1	586	0
chr17	2569319	2570249	H1_polyA+.75679	0	.	2569319	2570249	0	1	930	0
chr17	2605708	2606586	A549_Myers.53626	0	.	2605708	2606586	0	1	878	0
chr17	2626611	2627728	A549_Myers.53628	0	.	2626611	2627728	0	1	1117	0
chr17	2626840	2627228	H1_polyA+.75881	0	.	2626840	2627228	0	1	388	0
chr17	2630374	2631576	H1_polyA+.75883	0	.	2630374	2631576	0	1	1202	0
chr17	2644171	2644743	B_Cells_Pritchard.2163819	0	.	2644171	2644743	0	1	572	0
chr17	2644222	2644579	A549_Myers.53632	0	.	2644222	2644579	0	1	357	0
chr17	2898605	2899644	A549_Myers.53710	0	.	2898605	2899644	0	1	1039	0
chr17	2899198	2900620	B_Cells_Pritchard.2164867	0	+	2899198	2900620	0	2	289,38	0,1384
chr17	3549984	3550320	B_cells_Cheung.127544	0	.	3549984	3550320	0	1	336	0
chr17	3550053	3550903	HeLa_polyA+_Chen.23546	0	.	3550053	3550903	0	1	850	0
chr17	3552229	3553855	H1_polyA+.75587	0	.	3552229	3553855	0	1	1626	0
chr17	3552687	3553282	B_Cells_Pritchard.2165991	0	.	3552687	3553282	0	1	595	0
chr17	3552815	3553382	prostate_carcinoma.64779	0	.	3552815	3553382	0	1	567	0
chr17	3654036	3656228	HepG2_Caltech_ENCODE.24029	0	.	3654036	3656228	0	1	2192	0
chr17	3655210	3656156	melanoma_Garraway_short_term_cultures.44390	0	.	3655210	3656156	0	1	946	0
chr17	3655212	3656139	CD4_Plagnol_activated.41636	0	.	3655212	3656139	0	1	927	0
chr17	3655217	3655827	BT474_Burge_Thompson.21400	0	.	3655217	3655827	0	1	610	0
chr17	3655221	3656070	MCF7_Burge_Thompson.20153	0	.	3655221	3656070	0	1	849	0
chr17	3655232	3656140	CD4_Plagnol_resting.40635	0	.	3655232	3656140	0	1	908	0
chr17	3655240	3656137	brain_AmbionMAQC.28658	0	.	3655240	3656137	0	1	897	0
chr17	3655249	3656127	T47D_Burge_Thompson.18862	0	.	3655249	3656127	0	1	878	0
chr17	3655273	3656121	prostate_normal.37979	0	.	3655273	3656121	0	1	848	0
chr17	3655275	3656132	MeWo_Garraway.23345	0	.	3655275	3656132	0	1	857	0
chr17	3655308	3656723	REMC_BreastStem.33290	0	.	3655308	3656723	0	1	1415	0
chr17	3655310	3655813	MDAMB231_Thompson.14475	0	.	3655310	3655813	0	1	503	0
chr17	3655315	3656061	A549_Myers.53784	0	.	3655315	3656061	0	1	746	0
chr17	3655377	3656093	K562.29257	0	.	3655377	3656093	0	1	716	0
chr17	3655556	3656098	liver_polyA+.88703	0	.	3655556	3656098	0	1	542	0
chr17	3657669	3658046	HeLa_Bartel_WT_12hr.21492	0	.	3657669	3658046	0	1	377	0
chr17	3658451	3658767	MB435_Burge.27504	0	.	3658451	3658767	0	1	316	0
chr17	3744104	3745251	HepG2_Caltech_ENCODE.24036	0	.	3744104	3745251	0	1	1147	0
chr17	3745142	3745467	A549_Myers.53815	0	.	3745142	3745467	0	1	325	0
chr17	3816981	3817382	A549_Myers.53853	0	.	3816981	3817382	0	1	401	0
chr17	3833327	3834462	prostate_carcinoma.64804	0	-	3833327	3834462	0	2	136,783	0,352
chr17	3833917	3834269	A549_Myers.53856	0	.	3833917	3834269	0	1	352	0
chr17	3850867	3851727	REMC_MyoepithelialBreast.60922	0	.	3850867	3851727	0	1	860	0
chr17	4009265	4011351	REMC_MyoepithelialBreast.60927	0	.	4009265	4011351	0	1	2086	0
chr17	4009281	4010802	melanoma_Garraway_short_term_cultures.44417	0	.	4009281	4010802	0	1	1521	0
chr17	4009281	4010802	melanoma_Garraway_short_term_cultures.44416	0	+	4009281	4010802	0	2	894,540	0,981
chr17	4009386	4010796	MDAMB231_Thompson.14489	0	.	4009386	4010796	0	1	1410	0
chr17	4009418	4010015	MeI_Garraway.11533	0	.	4009418	4010015	0	1	597	0
chr17	4009433	4010019	A549_Myers.53911	0	.	4009433	4010019	0	1	586	0
chr17	4010174	4010838	CD4_Plagnol_resting.40690	0	.	4010174	4010838	0	1	664	0
chr17	4010303	4010632	liver_polyA+.88793	0	.	4010303	4010632	0	1	329	0
chr17	4010323	4010652	testes_Burge.34420	0	.	4010323	4010652	0	1	329	0
chr17	4010400	4010746	MeI_Garraway.11534	0	.	4010400	4010746	0	1	346	0
chr17	4219451	4219782	B_cells_Cheung.127655	0	.	4219451	4219782	0	1	331	0
chr17	4219842	4220222	A549_Myers.53929	0	.	4219842	4220222	0	1	380	0
chr17	4219861	4220264	B_cells_Cheung.127656	0	.	4219861	4220264	0	1	403	0
chr17	4224909	4225704	B_cells_Cheung.127658	0	.	4224909	4225704	0	1	795	0
chr17	4229974	4230449	B_cells_Cheung.127664	0	.	4229974	4230449	0	1	475	0
chr17	4235382	4235705	B_cells_Cheung.127669	0	.	4235382	4235705	0	1	323	0
chr17	4238793	4239827	B_cells_Cheung.127674	0	.	4238793	4239827	0	1	1034	0
chr17	4239393	4239830	B_Cells_Pritchard.2167107	0	.	4239393	4239830	0	1	437	0
chr17	4243634	4244950	B_cells_Cheung.127678	0	.	4243634	4244950	0	1	1316	0
chr17	4245791	4246327	H1_polyA+.76024	0	.	4245791	4246327	0	1	536	0
chr17	4245908	4246707	B_cells_Cheung.127680	0	.	4245908	4246707	0	1	799	0
chr17	4246760	4247483	B_cells_Cheung.127681	0	.	4246760	4247483	0	1	723	0
chr17	4248446	4248763	B_cells_Cheung.127683	0	.	4248446	4248763	0	1	317	0
chr17	4252059	4252658	B_cells_Cheung.127687	0	.	4252059	4252658	0	1	599	0
chr17	4255196	4262360	A549_Myers.53931	0	+	4255196	4262360	0	2	484,217	0,6947
chr17	4261224	4262072	REMC_BreastStem.33296	0	.	4261224	4262072	0	1	848	0
chr17	4272379	4272822	B_cells_Cheung.127691	0	.	4272379	4272822	0	1	443	0
chr17	4339922	4341126	MIP101.44766	0	.	4339922	4341126	0	1	1204	0
chr17	4344471	4344950	MIP101.44767	0	.	4344471	4344950	0	1	479	0
chr17	4344491	4344935	prostate_carcinoma.64838	0	.	4344491	4344935	0	1	444	0
chr17	4344502	4344929	B_Cells_Pritchard.2167595	0	.	4344502	4344929	0	1	427	0
chr17	4412940	4413549	REMC_MyoepithelialBreast.60966	0	.	4412940	4413549	0	1	609	0
chr17	4423751	4424211	A549_Myers.54090	0	.	4423751	4424211	0	1	460	0
chr17	4425584	4425954	B_Cells_Pritchard.2167839	0	.	4425584	4425954	0	1	370	0
chr17	4425890	4426233	A549_Myers.53971	0	.	4425890	4426233	0	1	343	0
chr17	4426509	4427387	B_Cells_Pritchard.2167841	0	.	4426509	4427387	0	1	878	0
chr17	4432274	4432603	A549_Myers.53974	0	.	4432274	4432603	0	1	329	0
chr17	4460492	4467795	HIT000097747	0	+	4460492	4467795	0	2	385,989	0,6314
chr17	4460492	4467693	ENST00000512682	0	+	4460492	4467693	0	2	385,887	0,6314
chr17	4470728	4472417	MIP101.44744	0	.	4470728	4472417	0	1	1689	0
chr17	4498209	4499199	BT20_Thompson.14037	0	.	4498209	4499199	0	1	990	0
chr17	4498665	4499234	prostate_normal.38090	0	.	4498665	4499234	0	1	569	0
chr17	4498713	4499138	T47D_Burge_Thompson.18901	0	.	4498713	4499138	0	1	425	0
chr17	4498726	4499244	MCF7_Burge_Thompson.20194	0	.	4498726	4499244	0	1	518	0
chr17	4506803	4507306	BT474_Burge_Thompson.21474	0	.	4506803	4507306	0	1	503	0
chr17	4519375	4519735	BT474_Burge_Thompson.21485	0	.	4519375	4519735	0	1	360	0
chr17	4650724	4651702	brain_AmbionMAQC.28761	0	.	4650724	4651702	0	1	978	0
chr17	4651009	4657277	B_cells_Cheung.127748	0	-	4651009	4657277	0	2	699,277	0,5991
chr17	4651013	4651357	A549_Myers.54015	0	.	4651013	4651357	0	1	344	0
chr17	4652159	4653232	B_Cells_Pritchard.2168617	0	+	4652159	4653232	0	1	1073	0
chr17	4655123	4655732	B_cells_Cheung.127754	0	.	4655123	4655732	0	1	609	0
chr17	4874293	4875220	CD4_Plagnol_resting.41053	0	.	4874293	4875220	0	1	927	0
chr17	4880711	4881778	REMC_LuminalBreast.65702	0	.	4880711	4881778	0	1	1067	0
chr17	4881466	4881859	B_cells_Cheung.127842	0	.	4881466	4881859	0	1	393	0
chr17	4888401	4889317	B_Cells_Pritchard.2169031	0	-	4888401	4889317	0	1	916	0
chr17	4891380	4892074	CD4_Plagnol_activated.41944	0	.	4891380	4892074	0	1	694	0
chr17	4893581	4894093	CD4_Plagnol_activated.41946	0	.	4893581	4894093	0	1	512	0
chr17	4903158	4904081	CD4_Plagnol_resting.40820	0	.	4903158	4904081	0	1	923	0
chr17	4919624	4921224	REMC_LuminalBreast.65703	0	.	4919624	4921224	0	1	1600	0
chr17	4919655	4920066	B_cells_Cheung.127852	0	.	4919655	4920066	0	1	411	0
chr17	4944288	4945412	B_cells_Cheung.127859	0	.	4944288	4945412	0	1	1124	0
chr17	4944355	4944846	B_Cells_Pritchard.2168975	0	.	4944355	4944846	0	1	491	0
chr17	5037840	5039558	B_cells_Cheung.127999	0	.	5037840	5039558	0	1	1718	0
chr17	5038167	5039032	H1_polyA+.76195	0	.	5038167	5039032	0	1	865	0
chr17	5039733	5043210	B_cells_Cheung.128000	0	.	5039733	5043210	0	1	3477	0
chr17	5043349	5043787	B_cells_Cheung.128001	0	.	5043349	5043787	0	1	438	0
chr17	5048863	5050106	B_cells_Cheung.128003	0	.	5048863	5050106	0	1	1243	0
chr17	5049549	5049973	H1_polyA+.76202	0	.	5049549	5049973	0	1	424	0
chr17	5080655	5082142	brain_AmbionMAQC.28853	0	.	5080655	5082142	0	1	1487	0
chr17	5080667	5084065	B_cells_Cheung.128016	0	.	5080667	5084065	0	1	3398	0
chr17	5080742	5081987	MIP101.44850	0	.	5080742	5081987	0	1	1245	0
chr17	5080997	5081942	H1_polyA+.76215	0	.	5080997	5081942	0	1	945	0
chr17	5082284	5093335	B_Cells_Pritchard.2169209	0	+	5082284	5093335	0	5	1778,144,1406,130,303	0,2696,2965,5589,10748
chr17	5082288	5084064	brain_AmbionMAQC.28848	0	.	5082288	5084064	0	1	1776	0
chr17	5082341	5083108	MIP101.44851	0	.	5082341	5083108	0	1	767	0
chr17	5082358	5083166	REMC_LuminalBreast.65728	0	.	5082358	5083166	0	1	808	0
chr17	5084974	5087974	B_cells_Cheung.128017	0	.	5084974	5087974	0	1	3000	0
chr17	5085637	5086654	REMC_LuminalBreast.65729	0	.	5085637	5086654	0	1	1017	0
chr17	5089300	5091082	B_cells_Cheung.128019	0	.	5089300	5091082	0	1	1782	0
chr17	5092355	5094244	B_cells_Cheung.127960	0	.	5092355	5094244	0	1	1889	0
chr17	5092499	5097579	B_Cells_Pritchard.2169237	0	-	5092499	5097579	0	2	31,341	0,4739
chr17	5097270	5097575	B_cells_Cheung.127966	0	.	5097270	5097575	0	1	305	0
chr17	5098277	5099849	B_cells_Cheung.127968	0	.	5098277	5099849	0	1	1572	0
chr17	5098397	5100530	B_Cells_Pritchard.2169265	0	+	5098397	5100530	0	2	1473,519	0,1614
chr17	5098411	5099822	prostate_carcinoma.64953	0	.	5098411	5099822	0	1	1411	0
chr17	5111621	5112532	B_cells_Cheung.127981	0	.	5111621	5112532	0	1	911	0
chr17	5112583	5114026	B_cells_Cheung.127982	0	.	5112583	5114026	0	1	1443	0
chr17	5117142	5118563	B_cells_Cheung.127985	0	.	5117142	5118563	0	1	1421	0
chr17	5118643	5119048	B_cells_Cheung.127986	0	.	5118643	5119048	0	1	405	0
chr17	5120034	5121179	B_cells_Cheung.127989	0	.	5120034	5121179	0	1	1145	0
chr17	5574461	5574910	A549_Myers.54099	0	.	5574461	5574910	0	1	449	0
chr17	5596629	5596982	B_Cells_Pritchard.2170039	0	.	5596629	5596982	0	1	353	0
chr17	5689558	5689894	B_cells_Cheung.128048	0	.	5689558	5689894	0	1	336	0
chr17	5870099	5870478	A549_Myers.54104	0	.	5870099	5870478	0	1	379	0
chr17	5871573	5871974	A549_Myers.54105	0	.	5871573	5871974	0	1	401	0
chr17	5974739	5978251	H1_polyA+.76240	0	.	5974739	5978251	0	1	3512	0
chr17	5981047	5982824	H1_polyA+.76243	0	.	5981047	5982824	0	1	1777	0
chr17	5985197	5986472	H1_polyA+.76246	0	.	5985197	5986472	0	1	1275	0
chr17	6082251	6082763	A549_Myers.54130	0	.	6082251	6082763	0	1	512	0
chr17	6083877	6086355	H1_polyA+.76249	0	.	6083877	6086355	0	1	2478	0
chr17	6084775	6085612	brain_AmbionMAQC.28878	0	.	6084775	6085612	0	1	837	0
chr17	6194873	6195289	prostate_carcinoma.65008	0	.	6194873	6195289	0	1	416	0
chr17	6265989	6266458	A549_Myers.54142	0	.	6265989	6266458	0	1	469	0
chr17	6402411	6402793	prostate_carcinoma.65026	0	.	6402411	6402793	0	1	382	0
chr17	6402644	6403108	B_Cells_Pritchard.2172677	0	.	6402644	6403108	0	1	464	0
chr17	6402937	6404563	prostate_carcinoma.65027	0	.	6402937	6404563	0	1	1626	0
chr17	6403471	6404998	B_Cells_Pritchard.2172681	0	.	6403471	6404998	0	1	1527	0
chr17	6403590	6404747	H1_polyA+.76256	0	.	6403590	6404747	0	1	1157	0
chr17	6405739	6406110	B_cells_Cheung.128083	0	.	6405739	6406110	0	1	371	0
chr17	6411228	6411793	B_Cells_Pritchard.2172709	0	.	6411228	6411793	0	1	565	0
chr17	6413126	6414925	REMC_LuminalBreast.65772	0	.	6413126	6414925	0	1	1799	0
chr17	6413143	6414378	B_Cells_Pritchard.2172719	0	.	6413143	6414378	0	1	1235	0
chr17	6413163	6413979	B_cells_Cheung.128088	0	.	6413163	6413979	0	1	816	0
chr17	6414735	6416296	B_cells_Cheung.128090	0	.	6414735	6416296	0	1	1561	0
chr17	6414873	6415973	MIP101.44868	0	.	6414873	6415973	0	1	1100	0
chr17	6415087	6416277	prostate_carcinoma.65029	0	.	6415087	6416277	0	1	1190	0
chr17	6415250	6416184	REMC_LuminalBreast.65773	0	.	6415250	6416184	0	1	934	0
chr17	6416508	6417465	B_cells_Cheung.128091	0	.	6416508	6417465	0	1	957	0
chr17	6416570	6417776	B_Cells_Pritchard.2172725	0	.	6416570	6417776	0	1	1206	0
chr17	6416633	6417403	MIP101.44869	0	.	6416633	6417403	0	1	770	0
chr17	6417533	6417853	B_cells_Cheung.128092	0	.	6417533	6417853	0	1	320	0
chr17	6498451	6499572	prostate_carcinoma.65042	0	.	6498451	6499572	0	1	1121	0
chr17	6498451	6503625	prostate_carcinoma.65044	0	-	6498451	6503625	0	2	971,43	0,5131
chr17	6498566	6499418	brain_AmbionMAQC.28915	0	.	6498566	6499418	0	1	852	0
chr17	6498682	6499457	A549_Myers.54242	0	.	6498682	6499457	0	1	775	0
chr17	6499075	6499512	CD4_Plagnol_resting.40892	0	.	6499075	6499512	0	1	437	0
chr17	6499144	6499593	prostate_normal.38215	0	.	6499144	6499593	0	1	449	0
chr17	6501260	6506030	B_Cells_Pritchard.2172881	0	+	6501260	6506030	0	4	566,430,402,2244	0,581,2124,2526
chr17	6501447	6501828	CD4_Plagnol_resting.40893	0	.	6501447	6501828	0	1	381	0
chr17	6501469	6501992	CD4_Plagnol_activated.42067	0	.	6501469	6501992	0	1	523	0
chr17	6503353	6506068	H1_polyA+.76270	0	.	6503353	6506068	0	1	2715	0
chr17	6503378	6507441	B_cells_Cheung.128115	0	.	6503378	6507441	0	1	4063	0
chr17	6503384	6506030	B_Cells_Pritchard.2172883	0	-	6503384	6506030	0	1	2646	0
chr17	6503421	6504218	REMC_MyoepithelialBreast.61097	0	.	6503421	6504218	0	1	797	0
chr17	6505437	6506009	REMC_LuminalBreast.65835	0	.	6505437	6506009	0	1	572	0
chr17	6507561	6508622	H1_polyA+.76272	0	.	6507561	6508622	0	1	1061	0
chr17	6509985	6511378	B_cells_Cheung.128118	0	.	6509985	6511378	0	1	1393	0
chr17	6511397	6512440	REMC_BreastStem.33380	0	.	6511397	6512440	0	1	1043	0
chr17	6514600	6516056	B_cells_Cheung.128121	0	.	6514600	6516056	0	1	1456	0
chr17	6514902	6516339	B_Cells_Pritchard.2172907	0	.	6514902	6516339	0	1	1437	0
chr17	6518266	6518680	H1_polyA+.76279	0	.	6518266	6518680	0	1	414	0
chr17	6518853	6522063	REMC_LuminalBreast.65841	0	.	6518853	6522063	0	1	3210	0
chr17	6518871	6521174	H1_polyA+.76280	0	.	6518871	6521174	0	1	2303	0
chr17	6521283	6523305	H1_polyA+.76281	0	.	6521283	6523305	0	1	2022	0
chr17	6521605	6522042	B_cells_Cheung.128125	0	.	6521605	6522042	0	1	437	0
chr17	6524761	6525670	H1_polyA+.76283	0	.	6524761	6525670	0	1	909	0
chr17	6525853	6526684	B_Cells_Pritchard.2172955	0	.	6525853	6526684	0	1	831	0
chr17	6746559	6750109	REMC_MyoepithelialBreast.61179	0	.	6746559	6750109	0	1	3550	0
chr17	6746597	6750057	H1_polyA+.76303	0	.	6746597	6750057	0	1	3460	0
chr17	6746647	6750106	REMC_LuminalBreast.65798	0	.	6746647	6750106	0	1	3459	0
chr17	6748760	6749911	B_Cells_Pritchard.2173435	0	+	6748760	6749911	0	1	1151	0
chr17	6748767	6749442	NEC_from_H9.48795	0	.	6748767	6749442	0	1	675	0
chr17	6748771	6750000	MDAMB468_Thompson.15735	0	.	6748771	6750000	0	1	1229	0
chr17	6748772	6749848	prostate_carcinoma.65078	0	.	6748772	6749848	0	1	1076	0
chr17	6748774	6750050	liver_polyA+.89238	0	.	6748774	6750050	0	1	1276	0
chr17	6748784	6749881	H9_polyA+.29368	0	.	6748784	6749881	0	1	1097	0
chr17	6750514	6779139	REMC_MyoepithelialBreast.61180	0	.	6750514	6779139	0	1	28625	0
chr17	6750625	6766097	REMC_LuminalBreast.65799	0	.	6750625	6766097	0	1	15472	0
chr17	6750962	6761405	B_cells_Cheung.128174	0	.	6750962	6761405	0	1	10443	0
chr17	6751183	6754188	REMC_BreastStem.33398	0	.	6751183	6754188	0	1	3005	0
chr17	6751940	6766086	H1_polyA+.76305	0	.	6751940	6766086	0	1	14146	0
chr17	6752153	6753798	MIP101.44896	0	.	6752153	6753798	0	1	1645	0
chr17	6752541	6754370	H9_polyA+.29371	0	.	6752541	6754370	0	1	1829	0
chr17	6752569	6752917	NEC_from_H9.48802	0	.	6752569	6752917	0	1	348	0
chr17	6752595	6754355	BT20_Thompson.14132	0	.	6752595	6754355	0	1	1760	0
chr17	6752685	6753758	MCF7_Burge_Thompson.20315	0	.	6752685	6753758	0	1	1073	0
chr17	6752687	6753371	K562.29410	0	.	6752687	6753371	0	1	684	0
chr17	6752848	6753295	kidney_Gilad.57412	0	.	6752848	6753295	0	1	447	0
chr17	6752938	6753391	HME_Burge.26574	0	.	6752938	6753391	0	1	453	0
chr17	6753014	6753534	NEC_from_H9.48801	0	.	6753014	6753534	0	1	520	0
chr17	6753596	6754214	NEC_from_H9.48803	0	.	6753596	6754214	0	1	618	0
chr17	6754875	6758551	H9_polyA+.29372	0	.	6754875	6758551	0	1	3676	0
chr17	6757552	6761395	BT20_Thompson.14134	0	.	6757552	6761395	0	1	3843	0
chr17	6757595	6758092	MCF7_Burge_Thompson.20319	0	.	6757595	6758092	0	1	497	0
chr17	6758142	6758843	MCF7_Burge_Thompson.20310	0	.	6758142	6758843	0	1	701	0
chr17	6758220	6758755	HME_Burge.26575	0	.	6758220	6758755	0	1	535	0
chr17	6758551	6760347	H9_polyA+.29373	0	.	6758551	6760347	0	1	1796	0
chr17	6758900	6759666	NEC_from_H9.48808	0	.	6758900	6759666	0	1	766	0
chr17	6759162	6760206	MCF7_Burge_Thompson.20320	0	.	6759162	6760206	0	1	1044	0
chr17	6761473	6765826	B_cells_Cheung.128175	0	.	6761473	6765826	0	1	4353	0
chr17	6761612	6765829	HepG2_Caltech_ENCODE.24166	0	.	6761612	6765829	0	1	4217	0
chr17	6761794	6767972	B_Cells_Pritchard.2173451	0	+	6761794	6767972	0	2	4025,1659	0,4519
chr17	6762142	6765807	H9_polyA+.29375	0	.	6762142	6765807	0	1	3665	0
chr17	6762841	6764342	liver_polyA+.89244	0	.	6762841	6764342	0	1	1501	0
chr17	6763083	6764368	MDAMB468_Thompson.15737	0	.	6763083	6764368	0	1	1285	0
chr17	6763102	6765807	BT20_Thompson.14136	0	.	6763102	6765807	0	1	2705	0
chr17	6763173	6763478	testes_Raymond.113867	0	.	6763173	6763478	0	1	305	0
chr17	6763174	6763524	colon_Raymond.83102	0	.	6763174	6763524	0	1	350	0
chr17	6763195	6763521	spleen_Raymond.132064	0	.	6763195	6763521	0	1	326	0
chr17	6763209	6764324	MCF7_Burge_Thompson.20321	0	.	6763209	6764324	0	1	1115	0
chr17	6768892	6781711	B_Cells_Pritchard.2173459	0	-	6768892	6781711	0	3	1185,7057,2324	0,1311,10495
chr17	6768893	6775931	REMC_LuminalBreast.65801	0	.	6768893	6775931	0	1	7038	0
chr17	6768901	6775802	H1_polyA+.76307	0	.	6768901	6775802	0	1	6901	0
chr17	6770206	6775801	B_cells_Cheung.128178	0	.	6770206	6775801	0	1	5595	0
chr17	6773845	6776116	REMC_BreastStem.33405	0	.	6773845	6776116	0	1	2271	0
chr17	6774704	6775482	kidney_Gilad.57430	0	.	6774704	6775482	0	1	778	0
chr17	6774704	6775645	liver_polyA+.89254	0	.	6774704	6775645	0	1	941	0
chr17	6774725	6775229	H9_polyA+.29386	0	.	6774725	6775229	0	1	504	0
chr17	6782146	6785138	REMC_LuminalBreast.65805	0	.	6782146	6785138	0	1	2992	0
chr17	6782232	6784777	B_cells_Cheung.128183	0	.	6782232	6784777	0	1	2545	0
chr17	6782234	6798997	HepG2_Caltech_ENCODE.24154	0	-	6782234	6798997	0	2	3409,277	0,16486
chr17	6782239	6785632	H1_polyA+.76310	0	.	6782239	6785632	0	1	3393	0
chr17	6782249	6785620	REMC_MyoepithelialBreast.61182	0	.	6782249	6785620	0	1	3371	0
chr17	6782249	6783383	K562.29419	0	.	6782249	6783383	0	1	1134	0
chr17	6782253	6785638	B_Cells_Pritchard.2173467	0	.	6782253	6785638	0	1	3385	0
chr17	6782475	6782983	kidney_Gilad.57440	0	.	6782475	6782983	0	1	508	0
chr17	6782515	6783336	MIP101.44903	0	.	6782515	6783336	0	1	821	0
chr17	6782755	6783337	H9_polyA+.29393	0	.	6782755	6783337	0	1	582	0
chr17	6784056	6784426	H9_polyA+.29394	0	.	6784056	6784426	0	1	370	0
chr17	6784857	6786553	B_cells_Cheung.128184	0	.	6784857	6786553	0	1	1696	0
chr17	6785252	6787935	REMC_LuminalBreast.65806	0	.	6785252	6787935	0	1	2683	0
chr17	6795453	6795827	HepG2_Caltech_ENCODE.24178	0	.	6795453	6795827	0	1	374	0
chr17	6795511	6795835	B_cells_Cheung.128194	0	.	6795511	6795835	0	1	324	0
chr17	6795525	6795850	B_Cells_Pritchard.2173497	0	.	6795525	6795850	0	1	325	0
chr17	6802769	6803895	REMC_LuminalBreast.65812	0	.	6802769	6803895	0	1	1126	0
chr17	6802797	6804134	B_Cells_Pritchard.2173513	0	.	6802797	6804134	0	1	1337	0
chr17	6808235	6808872	B_cells_Cheung.128206	0	.	6808235	6808872	0	1	637	0
chr17	6812982	6814082	REMC_MyoepithelialBreast.61140	0	.	6812982	6814082	0	1	1100	0
chr17	6822566	6823160	MIP101.44913	0	.	6822566	6823160	0	1	594	0
chr17	6863420	6863864	colon_Burge.24671	0	.	6863420	6863864	0	1	444	0
chr17	6863420	6863720	lymph_node_Burge.32391	0	.	6863420	6863720	0	1	300	0
chr17	6864244	6865827	REMC_LuminalBreast.65846	0	.	6864244	6865827	0	1	1583	0
chr17	6875537	6876881	H1_polyA+.76322	0	.	6875537	6876881	0	1	1344	0
chr17	6875757	6876989	REMC_LuminalBreast.65851	0	.	6875757	6876989	0	1	1232	0
chr17	6898054	6898442	A549_Myers.54273	0	.	6898054	6898442	0	1	388	0
chr17	6907484	6908290	prostate_normal.38255	0	.	6907484	6908290	0	1	806	0
chr17	6907629	6908706	prostate_carcinoma.65124	0	.	6907629	6908706	0	1	1077	0
chr17	6925567	6926157	liver_polyA+.89330	0	.	6925567	6926157	0	1	590	0
chr17	6930980	6932350	liver_polyA+.89334	0	-	6930980	6932350	0	2	485,614	0,756
chr17	6931054	6932350	kidney_Gilad.57484	0	-	6931054	6932350	0	2	411,614	0,682
chr17	6966141	6967645	liver_polyA+.89354	0	-	6966141	6967645	0	2	41,629	0,875
chr17	7012648	7014853	HepG2_Caltech_ENCODE.25273	0	.	7012648	7014853	0	1	2205	0
chr17	7013431	7015109	REMC_LuminalBreast.65859	0	.	7013431	7015109	0	1	1678	0
chr17	7024906	7027560	REMC_LuminalBreast.65863	0	.	7024906	7027560	0	1	2654	0
chr17	7024934	7027032	REMC_MyoepithelialBreast.61217	0	.	7024934	7027032	0	1	2098	0
chr17	7024937	7026535	H1_polyA+.76401	0	.	7024937	7026535	0	1	1598	0
chr17	7027722	7029879	REMC_MyoepithelialBreast.61218	0	.	7027722	7029879	0	1	2157	0
chr17	7028684	7029910	melanoma_Garraway_short_term_cultures.44657	0	.	7028684	7029910	0	1	1226	0
chr17	7028798	7029964	REMC_BreastStem.33462	0	.	7028798	7029964	0	1	1166	0
chr17	7029203	7029870	brain_AmbionMAQC.28945	0	.	7029203	7029870	0	1	667	0
chr17	7030118	7031178	REMC_BreastStem.33463	0	.	7030118	7031178	0	1	1060	0
chr17	7030173	7031218	B_cells_Cheung.128307	0	.	7030173	7031218	0	1	1045	0
chr17	7030250	7030850	brain_AmbionMAQC.29379	0	.	7030250	7030850	0	1	600	0
chr17	7031576	7032099	REMC_MyoepithelialBreast.61220	0	.	7031576	7032099	0	1	523	0
chr17	7114946	7116058	REMC_LuminalBreast.65872	0	.	7114946	7116058	0	1	1112	0
chr17	7145694	7146550	REMC_LuminalBreast.65881	0	.	7145694	7146550	0	1	856	0
chr17	7148902	7150027	REMC_LuminalBreast.65883	0	.	7148902	7150027	0	1	1125	0
chr17	7149554	7150004	B_cells_Cheung.128323	0	.	7149554	7150004	0	1	450	0
chr17	7215591	7217491	H1_polyA+.76451	0	.	7215591	7217491	0	1	1900	0
chr17	7221332	7222820	REMC_LuminalBreast.65904	0	.	7221332	7222820	0	1	1488	0
chr17	7221732	7222389	REMC_MyoepithelialBreast.61198	0	.	7221732	7222389	0	1	657	0
chr17	7272647	7277216	REMC_LuminalBreast.65916	0	.	7272647	7277216	0	1	4569	0
chr17	7273188	7275548	testes_Burge.34734	0	+	7273188	7275548	0	2	102,2138	0,222
chr17	7273249	7274069	REMC_MyoepithelialBreast.61212	0	.	7273249	7274069	0	1	820	0
chr17	7273663	7274550	B_Cells_Pritchard.2174739	0	.	7273663	7274550	0	1	887	0
chr17	7274158	7276045	REMC_MyoepithelialBreast.61213	0	.	7274158	7276045	0	1	1887	0
chr17	7274654	7276267	REMC_BreastStem.33504	0	.	7274654	7276267	0	1	1613	0
chr17	7275693	7276454	testes_Burge.34735	0	.	7275693	7276454	0	1	761	0
chr17	7276530	7276973	testes_Burge.34736	0	.	7276530	7276973	0	1	443	0
chr17	7360217	7360605	B_cells_Cheung.128359	0	.	7360217	7360605	0	1	388	0
chr17	7364658	7365606	REMC_LuminalBreast.65921	0	.	7364658	7365606	0	1	948	0
chr17	7368980	7369859	REMC_MyoepithelialBreast.61235	0	.	7368980	7369859	0	1	879	0
chr17	7370088	7371348	REMC_LuminalBreast.65924	0	.	7370088	7371348	0	1	1260	0
chr17	7381729	7382209	B_Cells_Pritchard.2174931	0	.	7381729	7382209	0	1	480	0
chr17	7426260	7427106	H1_rRNA-depleted_UCSD_REMC.57852	0	-	7426260	7427106	0	2	313,189	0,657
chr17	7502920	7504476	REMC_LuminalBreast.65970	0	.	7502920	7504476	0	1	1556	0
chr17	7502956	7503885	REMC_MyoepithelialBreast.61249	0	.	7502956	7503885	0	1	929	0
chr17	7678853	7679180	A549_Myers.54408	0	.	7678853	7679180	0	1	327	0
chr17	7679100	7679916	CD4_Snyder.49495	0	.	7679100	7679916	0	1	816	0
chr17	7679298	7680238	A549_Myers.54409	0	.	7679298	7680238	0	1	940	0
chr17	7679752	7680363	MCF7_Burge_Thompson.20406	0	.	7679752	7680363	0	1	611	0
chr17	7679916	7680372	CD4_Snyder.49496	0	.	7679916	7680372	0	1	456	0
chr17	7679922	7680234	B_Cells_Pritchard.2175515	0	+	7679922	7680234	0	1	312	0
chr17	7680476	7682226	ZR751_Thompson.15999	0	.	7680476	7682226	0	1	1750	0
chr17	7680509	7681704	MCF7_Burge_Thompson.20407	0	.	7680509	7681704	0	1	1195	0
chr17	7680510	7681497	BT474_Burge_Thompson.21693	0	.	7680510	7681497	0	1	987	0
chr17	7680903	7681215	MB435_Burge.28003	0	.	7680903	7681215	0	1	312	0
chr17	7723004	7727270	melanoma_Garraway_short_term_cultures.44769	0	.	7723004	7727270	0	1	4266	0
chr17	7723886	7727307	HeLa_polyA+_Chen.23845	0	.	7723886	7727307	0	1	3421	0
chr17	7725090	7726787	BT20_Thompson.14216	0	.	7725090	7726787	0	1	1697	0
chr17	7725328	7727044	BT474_Burge_Thompson.21760	0	.	7725328	7727044	0	1	1716	0
chr17	7725371	7726754	CD4_Plagnol_resting.41122	0	.	7725371	7726754	0	1	1383	0
chr17	7725515	7726772	MeWo_Garraway.23718	0	.	7725515	7726772	0	1	1257	0
chr17	7725665	7727167	CD4_Plagnol_activated.42286	0	.	7725665	7727167	0	1	1502	0
chr17	7726040	7726502	brain_AmbionMAQC.29068	0	.	7726040	7726502	0	1	462	0
chr17	7726054	7726759	testes_Burge.34840	0	.	7726054	7726759	0	1	705	0
chr17	7726064	7727288	HepG2_Caltech_ENCODE.24332	0	.	7726064	7727288	0	1	1224	0
chr17	7794839	7796453	B_Cells_Pritchard.2175607	0	.	7794839	7796453	0	1	1614	0
chr17	7795007	7800674	REMC_BreastStem.33546	0	+	7795007	7800674	0	2	1385,225	0,5442
chr17	7795149	7796421	REMC_LuminalBreast.65995	0	.	7795149	7796421	0	1	1272	0
chr17	7795228	7796534	B_cells_Cheung.128578	0	.	7795228	7796534	0	1	1306	0
chr17	7795351	7796441	REMC_MyoepithelialBreast.61279	0	.	7795351	7796441	0	1	1090	0
chr17	7795419	7796436	MIP101.45070	0	.	7795419	7796436	0	1	1017	0
chr17	7796582	7800853	REMC_MyoepithelialBreast.61280	0	.	7796582	7800853	0	1	4271	0
chr17	7796733	7801020	REMC_LuminalBreast.65996	0	.	7796733	7801020	0	1	4287	0
chr17	7797401	7799384	B_cells_Cheung.128581	0	.	7797401	7799384	0	1	1983	0
chr17	7799150	7800629	B_Cells_Pritchard.2175613	0	.	7799150	7800629	0	1	1479	0
chr17	7799451	7800601	B_cells_Cheung.128579	0	.	7799451	7800601	0	1	1150	0
chr17	7804423	7806330	REMC_MyoepithelialBreast.61283	0	.	7804423	7806330	0	1	1907	0
chr17	7805387	7806352	REMC_LuminalBreast.65999	0	.	7805387	7806352	0	1	965	0
chr17	7865467	7867121	H1_polyA+.76479	0	.	7865467	7867121	0	1	1654	0
chr17	7895576	7909281	prostate_carcinoma.65372	0	+	7895576	7909281	0	3	441,483,3010	0,10028,10695
chr17	7900923	7912543	prostate_carcinoma.65371	0	+	7900923	7912543	0	3	1653,140,2054	0,9266,9566
chr17	7900928	7902808	HIT000017480	0	+	7900928	7902808	0	1	1880	0
chr17	7900938	7902537	HepG2_Caltech_ENCODE.24342	0	.	7900938	7902537	0	1	1599	0
chr17	7902826	7906080	HepG2_Caltech_ENCODE.24343	0	.	7902826	7906080	0	1	3254	0
chr17	7902833	7903422	BT474_Burge_Thompson.21718	0	.	7902833	7903422	0	1	589	0
chr17	7902843	7903403	REMC_MyoepithelialBreast.61291	0	.	7902843	7903403	0	1	560	0
chr17	7902930	7903317	B_Cells_Pritchard.2175935	0	.	7902930	7903317	0	1	387	0
chr17	7906015	7908083	H1_polyA+.76482	0	.	7906015	7908083	0	1	2068	0
chr17	7906674	7907006	H1_rRNA-depleted_UCSD_REMC.57931	0	.	7906674	7907006	0	1	332	0
chr17	7906714	7907684	HeLa_polyA+_Chen.23855	0	.	7906714	7907684	0	1	970	0
chr17	7908177	7909243	H1_polyA+.76483	0	.	7908177	7909243	0	1	1066	0
chr17	7908267	7909289	BT474_Burge_Thompson.21719	0	.	7908267	7909289	0	1	1022	0
chr17	7908377	7908832	H1_rRNA-depleted_UCSD_REMC.57932	0	.	7908377	7908832	0	1	455	0
chr17	7908435	7909320	HeLa_polyA+_Chen.23856	0	.	7908435	7909320	0	1	885	0
chr17	7909452	7912694	H1_polyA+.76484	0	.	7909452	7912694	0	1	3242	0
chr17	7911099	7911591	HeLa_polyA+_Chen.23859	0	.	7911099	7911591	0	1	492	0
chr17	7912999	7913824	H1_polyA+.76485	0	.	7912999	7913824	0	1	825	0
chr17	7913295	7914078	HeLa_polyA+_Chen.23860	0	.	7913295	7914078	0	1	783	0
chr17	7914547	7915248	HeLa_polyA+_Chen.23861	0	.	7914547	7915248	0	1	701	0
chr17	7914723	7915640	H1_polyA+.76486	0	.	7914723	7915640	0	1	917	0
chr17	7934997	7935712	prostate_normal.38410	0	.	7934997	7935712	0	1	715	0
chr17	7935871	7936371	H1_polyA+.76492	0	.	7935871	7936371	0	1	500	0
chr17	7936663	7937632	prostate_carcinoma.65378	0	.	7936663	7937632	0	1	969	0
chr17	7969440	7970637	CD4_Plagnol_resting.41135	0	.	7969440	7970637	0	1	1197	0
chr17	7969454	7969787	CD4_Plagnol_activated.42312	0	.	7969454	7969787	0	1	333	0
chr17	7969553	7970593	H1_polyA+.76498	0	.	7969553	7970593	0	1	1040	0
chr17	7969887	7970635	CD4_Plagnol_activated.42313	0	.	7969887	7970635	0	1	748	0
chr17	7969978	7970319	MB435_Burge.28106	0	.	7969978	7970319	0	1	341	0
chr17	7969992	7970569	brain_AmbionMAQC.29137	0	.	7969992	7970569	0	1	577	0
chr17	7970125	7970588	lymph_node_Burge.32679	0	.	7970125	7970588	0	1	463	0
chr17	7970156	7970547	MIP101.45425	0	.	7970156	7970547	0	1	391	0
chr17	7970182	7970577	melanoma_Garraway_short_term_cultures.44784	0	.	7970182	7970577	0	1	395	0
chr17	7970203	7970512	ovary_Raymond.170546	0	.	7970203	7970512	0	1	309	0
chr17	7970384	7970742	MB435_Burge.28107	0	.	7970384	7970742	0	1	358	0
chr17	7971883	7972420	B_cells_Cheung.128721	0	.	7971883	7972420	0	1	537	0
chr17	7976713	7977564	REMC_LuminalBreast.66011	0	.	7976713	7977564	0	1	851	0
chr17	7977040	7977614	REMC_MyoepithelialBreast.61297	0	.	7977040	7977614	0	1	574	0
chr17	7977410	7977748	A549_Myers.54480	0	.	7977410	7977748	0	1	338	0
chr17	8008065	8008845	B_Cells_Pritchard.2176303	0	+	8008065	8008845	0	1	780	0
chr17	8011481	8013322	H1_polyA+.76505	0	.	8011481	8013322	0	1	1841	0
chr17	8012363	8013045	B_Cells_Pritchard.2176315	0	+	8012363	8013045	0	1	682	0
chr17	8012493	8014817	REMC_MyoepithelialBreast.61308	0	.	8012493	8014817	0	1	2324	0
chr17	8013437	8014601	H1_polyA+.76506	0	.	8013437	8014601	0	1	1164	0
chr17	8024033	8024374	B_cells_Cheung.128736	0	.	8024033	8024374	0	1	341	0
chr17	8029913	8030527	CD4_Plagnol_activated.42322	0	.	8029913	8030527	0	1	614	0
chr17	8029932	8030430	A549_Myers.54499	0	.	8029932	8030430	0	1	498	0
chr17	8030032	8030401	brain_AmbionMAQC.29107	0	.	8030032	8030401	0	1	369	0
chr17	8030668	8031016	A549_Myers.54500	0	.	8030668	8031016	0	1	348	0
chr17	8041062	8042193	B_cells_Cheung.128744	0	.	8041062	8042193	0	1	1131	0
chr17	8041108	8042140	H1_polyA+.76553	0	.	8041108	8042140	0	1	1032	0
chr17	8042738	8043498	H1_polyA+.76550	0	.	8042738	8043498	0	1	760	0
chr17	8043131	8043559	melanoma_Garraway_short_term_cultures.44800	0	.	8043131	8043559	0	1	428	0
chr17	8043593	8044463	MIP101.45432	0	.	8043593	8044463	0	1	870	0
chr17	8043647	8044524	B_cells_Cheung.128745	0	.	8043647	8044524	0	1	877	0
chr17	8043649	8044512	H1_polyA+.76554	0	.	8043649	8044512	0	1	863	0
chr17	8043651	8045755	B_Cells_Pritchard.2177501	0	+	8043651	8045755	0	2	830,605	0,1499
chr17	8056627	8057953	B_cells_Cheung.128625	0	.	8056627	8057953	0	1	1326	0
chr17	8058183	8058548	B_cells_Cheung.128627	0	.	8058183	8058548	0	1	365	0
chr17	8063340	8063929	CD4_Plagnol_activated.42333	0	.	8063340	8063929	0	1	589	0
chr17	8063369	8063943	B_cells_Cheung.128634	0	.	8063369	8063943	0	1	574	0
chr17	8063420	8064064	B_Cells_Pritchard.2177541	0	+	8063420	8064064	0	1	644	0
chr17	8063494	8064572	CD4_Plagnol_resting.41347	0	.	8063494	8064572	0	1	1078	0
chr17	8064688	8065774	REMC_LuminalBreast.66073	0	.	8064688	8065774	0	1	1086	0
chr17	8064691	8065601	REMC_MyoepithelialBreast.61314	0	.	8064691	8065601	0	1	910	0
chr17	8064693	8065807	H1_polyA+.76559	0	.	8064693	8065807	0	1	1114	0
chr17	8064694	8065566	lymph_node_Burge.32721	0	.	8064694	8065566	0	1	872	0
chr17	8064721	8065642	liver_polyA+.89554	0	.	8064721	8065642	0	1	921	0
chr17	8064735	8065670	T47D_Burge_Thompson.19181	0	.	8064735	8065670	0	1	935	0
chr17	8065315	8065771	BT474_Burge_Thompson.21736	0	.	8065315	8065771	0	1	456	0
chr17	8067195	8067824	CD4_Snyder.49573	0	.	8067195	8067824	0	1	629	0
chr17	8116243	8120947	REMC_MyoepithelialBreast.61319	0	.	8116243	8120947	0	1	4704	0
chr17	8116311	8129568	prostate_carcinoma.65537	0	+	8116311	8129568	0	2	342,578	0,12679
chr17	8116313	8117179	CD4_Plagnol_resting.41364	0	.	8116313	8117179	0	1	866	0
chr17	8116323	8117669	REMC_LuminalBreast.66077	0	.	8116323	8117669	0	1	1346	0
chr17	8117780	8120955	REMC_LuminalBreast.66078	0	.	8117780	8120955	0	1	3175	0
chr17	8119394	8120853	HeLa_polyA+_Chen.23896	0	.	8119394	8120853	0	1	1459	0
chr17	8119404	8120813	CD4_Plagnol_activated.42355	0	.	8119404	8120813	0	1	1409	0
chr17	8119405	8120864	prostate_carcinoma.65539	0	.	8119405	8120864	0	1	1459	0
chr17	8119413	8120859	H9_polyA+.29537	0	.	8119413	8120859	0	1	1446	0
chr17	8119415	8120844	NEC_from_H9.49184	0	.	8119415	8120844	0	1	1429	0
chr17	8119424	8120857	prostate_normal.38449	0	.	8119424	8120857	0	1	1433	0
chr17	8119429	8120429	brain_AmbionMAQC.29120	0	.	8119429	8120429	0	1	1000	0
chr17	8119479	8120407	BT474_Burge_Thompson.21750	0	.	8119479	8120407	0	1	928	0
chr17	8119751	8120831	MDAMB231_Thompson.14700	0	.	8119751	8120831	0	1	1080	0
chr17	8120067	8120850	CD4_Plagnol_resting.41366	0	.	8120067	8120850	0	1	783	0
chr17	8120086	8120846	A549_Myers.54514	0	.	8120086	8120846	0	1	760	0
chr17	8120094	8120857	K562.29596	0	.	8120094	8120857	0	1	763	0
chr17	8120169	8120856	MCF7_Burge_Thompson.20458	0	.	8120169	8120856	0	1	687	0
chr17	8120190	8120835	melanoma_Garraway_short_term_cultures.44817	0	.	8120190	8120835	0	1	645	0
chr17	8120349	8120900	H1_rRNA-depleted_UCSD_REMC.57986	0	.	8120349	8120900	0	1	551	0
chr17	8120533	8120940	brain_AmbionMAQC.29121	0	.	8120533	8120940	0	1	407	0
chr17	8121002	8121829	HeLa_polyA+_Chen.23895	0	.	8121002	8121829	0	1	827	0
chr17	8147843	8149032	B_cells_Cheung.128668	0	.	8147843	8149032	0	1	1189	0
chr17	8148329	8148853	K562.29581	0	.	8148329	8148853	0	1	524	0
chr17	8149791	8150596	B_cells_Cheung.128669	0	.	8149791	8150596	0	1	805	0
chr17	8149795	8150592	B_Cells_Pritchard.2177609	0	-	8149795	8150592	0	1	797	0
chr17	8168552	8169555	H1_polyA+.76533	0	.	8168552	8169555	0	1	1003	0
chr17	8170567	8171867	H1_polyA+.76535	0	.	8170567	8171867	0	1	1300	0
chr17	8170678	8171104	H9_polyA+.29547	0	.	8170678	8171104	0	1	426	0
chr17	8170801	8171723	prostate_normal.38427	0	.	8170801	8171723	0	1	922	0
chr17	8170834	8171749	colon_Burge.24921	0	.	8170834	8171749	0	1	915	0
chr17	8170878	8171635	breast_Burge.26536	0	.	8170878	8171635	0	1	757	0
chr17	8173202	8173525	B_cells_Cheung.128671	0	.	8173202	8173525	0	1	323	0
chr17	8195882	8196358	B_cells_Cheung.128672	0	.	8195882	8196358	0	1	476	0
chr17	8197483	8198329	prostate_carcinoma.65390	0	.	8197483	8198329	0	1	846	0
chr17	8201957	8202428	prostate_normal.38429	0	.	8201957	8202428	0	1	471	0
chr17	8202455	8204263	HIT000019715	0	-	8202455	8204263	0	1	1808	0
chr17	8202455	8204584	NR_024447	0	-	8202455	8204584	0	1	2129	0
chr17	8202568	8206220	REMC_LuminalBreast.66065	0	.	8202568	8206220	0	1	3652	0
chr17	8202576	8208034	H1_polyA+.76541	0	.	8202576	8208034	0	1	5458	0
chr17	8202692	8204293	B_cells_Cheung.128677	0	.	8202692	8204293	0	1	1601	0
chr17	8202708	8204791	prostate_carcinoma.65391	0	.	8202708	8204791	0	1	2083	0
chr17	8202711	8206204	prostate_normal.38430	0	.	8202711	8206204	0	1	3493	0
chr17	8202716	8204272	brain_AmbionMAQC.29143	0	.	8202716	8204272	0	1	1556	0
chr17	8202724	8204221	CD4_Plagnol_activated.42360	0	.	8202724	8204221	0	1	1497	0
chr17	8202726	8204297	CD4_Plagnol_resting.41157	0	.	8202726	8204297	0	1	1571	0
chr17	8202772	8204207	H9_polyA+.29549	0	.	8202772	8204207	0	1	1435	0
chr17	8202800	8204251	REMC_BreastStem.33572	0	.	8202800	8204251	0	1	1451	0
chr17	8202847	8205749	melanoma_Garraway_short_term_cultures.44826	0	.	8202847	8205749	0	1	2902	0
chr17	8202871	8204322	HeLa_polyA+_Chen.23902	0	.	8202871	8204322	0	1	1451	0
chr17	8202911	8204163	MCF7_Burge_Thompson.20460	0	.	8202911	8204163	0	1	1252	0
chr17	8203022	8206170	REMC_MyoepithelialBreast.61331	0	.	8203022	8206170	0	1	3148	0
chr17	8203207	8205343	MeWo_Garraway.23680	0	.	8203207	8205343	0	1	2136	0
chr17	8203409	8204132	K562.29582	0	.	8203409	8204132	0	1	723	0
chr17	8203569	8204171	T47D_Burge_Thompson.19191	0	.	8203569	8204171	0	1	602	0
chr17	8203598	8203973	NEC_from_H9.49196	0	.	8203598	8203973	0	1	375	0
chr17	8203631	8204329	MDAMB468_Thompson.15864	0	.	8203631	8204329	0	1	698	0
chr17	8204427	8206237	B_cells_Cheung.128678	0	.	8204427	8206237	0	1	1810	0
chr17	8204466	8207777	HepG2_Caltech_ENCODE.24378	0	.	8204466	8207777	0	1	3311	0
chr17	8204490	8205694	BT474_Burge_Thompson.21770	0	.	8204490	8205694	0	1	1204	0
chr17	8204698	8205619	CD4_Plagnol_activated.42361	0	.	8204698	8205619	0	1	921	0
chr17	8204846	8208833	H9_polyA+.29550	0	-	8204846	8208833	0	2	979,324	0,3663
chr17	8204860	8205995	HeLa_polyA+_Chen.23903	0	.	8204860	8205995	0	1	1135	0
chr17	8204885	8206211	brain_AmbionMAQC.29145	0	.	8204885	8206211	0	1	1326	0
chr17	8204887	8205818	MCF7_Burge_Thompson.20461	0	.	8204887	8205818	0	1	931	0
chr17	8204978	8205638	NEC_from_H9.49199	0	.	8204978	8205638	0	1	660	0
chr17	8206295	8207861	REMC_LuminalBreast.66067	0	.	8206295	8207861	0	1	1566	0
chr17	8206392	8207813	REMC_MyoepithelialBreast.61332	0	.	8206392	8207813	0	1	1421	0
chr17	8206440	8207496	REMC_BreastStem.33573	0	.	8206440	8207496	0	1	1056	0
chr17	8206516	8207747	HeLa_polyA+_Chen.23904	0	.	8206516	8207747	0	1	1231	0
chr17	8210169	8210933	MDAMB468_Thompson.15865	0	.	8210169	8210933	0	1	764	0
chr17	8210180	8211591	brain_AmbionMAQC.29149	0	.	8210180	8211591	0	1	1411	0
chr17	8210188	8210737	BT20_Thompson.14248	0	.	8210188	8210737	0	1	549	0
chr17	8210202	8210796	MCF7_Burge_Thompson.20464	0	.	8210202	8210796	0	1	594	0
chr17	8210205	8210962	A549_Myers.54529	0	.	8210205	8210962	0	1	757	0
chr17	8210211	8210800	HeLa_polyA+_Chen.23905	0	.	8210211	8210800	0	1	589	0
chr17	8210212	8211274	melanoma_Garraway_short_term_cultures.44830	0	.	8210212	8211274	0	1	1062	0
chr17	8228473	8229739	REMC_LuminalBreast.66070	0	.	8228473	8229739	0	1	1266	0
chr17	8228974	8229679	H1_polyA+.76547	0	.	8228974	8229679	0	1	705	0
chr17	8252508	8252842	A549_Myers.54538	0	.	8252508	8252842	0	1	334	0
chr17	8541430	8542380	melanoma_Garraway_short_term_cultures.44873	0	.	8541430	8542380	0	1	950	0
chr17	8544484	8545544	melanoma_Garraway_short_term_cultures.44874	0	.	8544484	8545544	0	1	1060	0
chr17	8545883	8547342	melanoma_Garraway_short_term_cultures.44875	0	.	8545883	8547342	0	1	1459	0
chr17	8562888	8565812	Rinn_00025299	0	+	8562888	8565812	0	2	225,806	0,2118
chr17	8571209	8572369	melanoma_Garraway_short_term_cultures.44885	0	.	8571209	8572369	0	1	1160	0
chr17	8590347	8590981	B_cells_Cheung.128713	0	.	8590347	8590981	0	1	634	0
chr17	8615774	8616685	B_cells_Cheung.131396	0	.	8615774	8616685	0	1	911	0
chr17	8619219	8620125	B_cells_Cheung.131398	0	.	8619219	8620125	0	2	391,428	0,478
chr17	8629417	8630969	B_cells_Cheung.131400	0	.	8629417	8630969	0	1	1552	0
chr17	8629479	8630727	B_Cells_Pritchard.2177453	0	.	8629479	8630727	0	1	1248	0
chr17	8632498	8635149	B_Cells_Pritchard.2177463	0	.	8632498	8635149	0	1	2651	0
chr17	8637516	8639696	B_Cells_Pritchard.2192611	0	-	8637516	8639696	0	2	1709,403	0,1777
chr17	8715188	8715549	B_cells_Cheung.131417	0	.	8715188	8715549	0	1	361	0
chr17	8715951	8718693	B_cells_Cheung.131418	0	.	8715951	8718693	0	1	2742	0
chr17	8716162	8717861	B_Cells_Pritchard.2177773	0	.	8716162	8717861	0	1	1699	0
chr17	8719191	8721177	B_Cells_Pritchard.2177779	0	.	8719191	8721177	0	1	1986	0
chr17	8720490	8721192	B_cells_Cheung.131420	0	.	8720490	8721192	0	1	702	0
chr17	8809810	8813932	MCF7_Burge_Thompson.20480	0	+	8809810	8813932	0	2	225,3124	0,998
chr17	8809822	8813511	BT20_Thompson.14263	0	+	8809822	8813511	0	2	223,2703	0,986
chr17	8809854	8813530	REMC_LuminalBreast.66082	0	+	8809854	8813530	0	2	191,2722	0,954
chr17	8809854	8821027	H1_polyA+.76593	0	+	8809854	8821027	0	3	191,2693,228	0,924,10945
chr17	8809906	8812862	H9_polyA+.29576	0	+	8809906	8812862	0	2	139,2054	0,902
chr17	8810821	8812579	CD4_Plagnol_resting.41220	0	.	8810821	8812579	0	1	1758	0
chr17	8810845	8811411	prostate_normal.38474	0	.	8810845	8811411	0	1	566	0
chr17	8810921	8811939	CD4_Plagnol_activated.42428	0	.	8810921	8811939	0	1	1018	0
chr17	8819401	8820691	B_Cells_Pritchard.2177877	0	.	8819401	8820691	0	1	1290	0
chr17	8820810	8822686	B_Cells_Pritchard.2177879	0	.	8820810	8822686	0	1	1876	0
chr17	8846336	8847046	REMC_LuminalBreast.66083	0	.	8846336	8847046	0	1	710	0
chr17	9596264	9597312	HeLa_polyA+_Chen.23950	0	.	9596264	9597312	0	1	1048	0
chr17	9596371	9596958	HeLa_polyA-_Chen.12895	0	.	9596371	9596958	0	1	587	0
chr17	9597383	9599249	HeLa_polyA+_Chen.23951	0	.	9597383	9599249	0	1	1866	0
chr17	9597407	9598453	HeLa_polyA-_Chen.12897	0	.	9597407	9598453	0	1	1046	0
chr17	9597723	9598128	A549_Myers.54654	0	.	9597723	9598128	0	1	405	0
chr17	9666725	9668502	HIT000007828	0	-	9666725	9668502	0	1	1777	0
chr17	9751854	9752464	B_cells_Cheung.128833	0	.	9751854	9752464	0	1	610	0
chr17	9751893	9752550	A549_Myers.54692	0	.	9751893	9752550	0	1	657	0
chr17	9752231	9752875	melanoma_Garraway_short_term_cultures.44966	0	.	9752231	9752875	0	1	644	0
chr17	10119023	10123221	Rinn_00025558	0	-	10119023	10123221	0	2	1427,153	0,4045
chr17	10135794	10137377	REMC_BreastStem.34001	0	.	10135794	10137377	0	1	1583	0
chr17	10501920	10507915	B_Cells_Pritchard.2183139	0	+	10501920	10507915	0	2	2539,772	0,5223
chr17	10502328	10518214	MIP101.45240	0	+	10502328	10518214	0	2	1962,958	0,14928
chr17	10502389	10504464	H1_polyA+.76851	0	.	10502389	10504464	0	1	2075	0
chr17	10503106	10505131	REMC_LuminalBreast.66340	0	.	10503106	10505131	0	1	2025	0
chr17	10503556	10504162	CD4_Plagnol_activated.42500	0	.	10503556	10504162	0	1	606	0
chr17	10506551	10509205	REMC_LuminalBreast.66341	0	.	10506551	10509205	0	1	2654	0
chr17	10507112	10507959	B_cells_Cheung.129348	0	.	10507112	10507959	0	1	847	0
chr17	10507153	10507923	H1_polyA+.76855	0	.	10507153	10507923	0	1	770	0
chr17	10507423	10507850	REMC_MyoepithelialBreast.61518	0	.	10507423	10507850	0	1	427	0
chr17	10509356	10510307	REMC_BreastStem.34156	0	.	10509356	10510307	0	1	951	0
chr17	10509633	10510589	H1_polyA+.76854	0	.	10509633	10510589	0	1	956	0
chr17	10515864	10522010	B_cells_Cheung.129352	0	.	10515864	10522010	0	1	6146	0
chr17	10515865	10522034	H1_polyA+.76850	0	.	10515865	10522034	0	1	6169	0
chr17	10515879	10522017	REMC_BreastStem.34160	0	.	10515879	10522017	0	1	6138	0
chr17	10516406	10521992	B_Cells_Pritchard.2183149	0	-	10516406	10521992	0	7	753,25,95,95,387,366,53	0,857,1022,3841,3971,4358,5533
chr17	10516515	10520293	REMC_MyoepithelialBreast.61514	0	.	10516515	10520293	0	1	3778	0
chr17	10516520	10520259	HepG2_Caltech_ENCODE.24430	0	.	10516520	10520259	0	1	3739	0
chr17	10516549	10521128	HeLa_polyA+_Chen.23985	0	.	10516549	10521128	0	1	4579	0
chr17	10518459	10521910	CD4_Plagnol_activated.42530	0	.	10518459	10521910	0	1	3451	0
chr17	10518466	10521898	BT474_Burge_Thompson.21816	0	.	10518466	10521898	0	1	3432	0
chr17	10518497	10520267	ZR751_Thompson.16081	0	.	10518497	10520267	0	1	1770	0
chr17	10518509	10520283	T47D_Burge_Thompson.19235	0	.	10518509	10520283	0	1	1774	0
chr17	10519409	10521078	MeWo_Garraway.23738	0	.	10519409	10521078	0	1	1669	0
chr17	10520109	10520643	H1_rRNA-depleted_UCSD_REMC.58096	0	.	10520109	10520643	0	1	534	0
chr17	10520214	10520643	IMR90_UCSD_REMC.33278	0	+	10520214	10520643	0	1	429	0
chr17	10576334	10578996	H1_polyA+.76868	0	.	10576334	10578996	0	1	2662	0
chr17	10577013	10578189	REMC_LuminalBreast.66352	0	.	10577013	10578189	0	1	1176	0
chr17	10577079	10579879	HIT000016006	0	-	10577079	10579879	0	1	2800	0
chr17	10577142	10579028	B_cells_Cheung.129371	0	.	10577142	10579028	0	1	1886	0
chr17	10577183	10579009	prostate_carcinoma.65795	0	.	10577183	10579009	0	1	1826	0
chr17	10577886	10578997	prostate_normal.38660	0	.	10577886	10578997	0	1	1111	0
chr17	10579147	10579898	B_cells_Cheung.129372	0	.	10579147	10579898	0	1	751	0
chr17	10580599	10582615	prostate_normal.38661	0	.	10580599	10582615	0	1	2016	0
chr17	10582722	10584019	prostate_normal.38662	0	.	10582722	10584019	0	1	1297	0
chr17	10582993	10585059	H1_polyA+.76870	0	.	10582993	10585059	0	1	2066	0
chr17	10583240	10583821	B_Cells_Pritchard.2183269	0	.	10583240	10583821	0	1	581	0
chr17	10583334	10583932	REMC_LuminalBreast.66354	0	.	10583334	10583932	0	1	598	0
chr17	10583336	10583964	liver_polyA+.89983	0	.	10583336	10583964	0	1	628	0
chr17	10592977	10594171	prostate_normal.38668	0	.	10592977	10594171	0	1	1194	0
chr17	10593396	10594696	H9_polyA+.29615	0	.	10593396	10594696	0	1	1300	0
chr17	10594122	10595068	prostate_carcinoma.65808	0	.	10594122	10595068	0	1	946	0
chr17	10594369	10594774	liver_polyA+.89934	0	.	10594369	10594774	0	1	405	0
chr17	10595203	10601620	prostate_carcinoma.65809	0	+	10595203	10601620	0	2	1005,1148	0,5269
chr17	10595370	10596138	prostate_normal.38667	0	.	10595370	10596138	0	1	768	0
chr17	10596491	10597786	prostate_normal.38670	0	.	10596491	10597786	0	1	1295	0
chr17	10598007	10613115	prostate_carcinoma.65800	0	+	10598007	10613115	0	2	397,1209	0,13899
chr17	10598106	10613106	liver_polyA+.89937	0	+	10598106	10613106	0	4	298,50,178,1200	0,1323,12614,13800
chr17	10598206	10613097	prostate_normal.38671	0	+	10598206	10613097	0	2	198,2377	0,12514
chr17	10599344	10599760	B_Cells_Pritchard.2183339	0	.	10599344	10599760	0	1	416	0
chr17	10603578	10603960	prostate_carcinoma.65814	0	.	10603578	10603960	0	1	382	0
chr17	10605151	10606388	prostate_carcinoma.65816	0	.	10605151	10606388	0	1	1237	0
chr17	10610226	10613115	prostate_carcinoma.65799	0	.	10610226	10613115	0	1	2889	0
chr17	10610516	10613085	B_Cells_Pritchard.2183405	0	.	10610516	10613085	0	1	2569	0
chr17	10611142	10611728	H9_polyA+.29617	0	.	10611142	10611728	0	1	586	0
chr17	10611295	10613085	B_cells_Cheung.129199	0	.	10611295	10613085	0	1	1790	0
chr17	10611821	10613000	REMC_MyoepithelialBreast.61526	0	.	10611821	10613000	0	1	1179	0
chr17	10611834	10613030	REMC_LuminalBreast.66356	0	.	10611834	10613030	0	1	1196	0
chr17	10611887	10613085	H9_polyA+.29618	0	.	10611887	10613085	0	1	1198	0
chr17	10611901	10613096	brain_AmbionMAQC.29202	0	.	10611901	10613096	0	1	1195	0
chr17	10611966	10613106	kidney_Gilad.57951	0	.	10611966	10613106	0	1	1140	0
chr17	10612483	10613112	REMC_BreastStem.33637	0	.	10612483	10613112	0	1	629	0
chr17	10629920	10630611	B_Cells_Pritchard.2183477	0	.	10629920	10630611	0	1	691	0
chr17	10636208	10636556	A549_Myers.54756	0	.	10636208	10636556	0	1	348	0
chr17	10646739	10647251	prostate_normal.38551	0	.	10646739	10647251	0	1	512	0
chr17	10646973	10647714	H1_polyA+.76885	0	.	10646973	10647714	0	1	741	0
chr17	10648392	10649220	H1_polyA+.76886	0	.	10648392	10649220	0	1	828	0
chr17	10649473	10652647	prostate_carcinoma.65825	0	.	10649473	10652647	0	1	3174	0
chr17	10651527	10652638	prostate_normal.38554	0	.	10651527	10652638	0	1	1111	0
chr17	10658704	10659877	prostate_carcinoma.65833	0	.	10658704	10659877	0	1	1173	0
chr17	10658714	10660096	prostate_normal.38557	0	.	10658714	10660096	0	1	1382	0
chr17	10659092	10660372	H1_polyA+.76892	0	.	10659092	10660372	0	1	1280	0
chr17	10682389	10690110	prostate_carcinoma.65835	0	+	10682389	10690110	0	2	1841,1562	0,6159
chr17	10687400	10689139	prostate_carcinoma.65836	0	.	10687400	10689139	0	1	1739	0
chr17	10687464	10688034	prostate_normal.38566	0	.	10687464	10688034	0	1	570	0
chr17	10688034	10692038	prostate_normal.38567	0	+	10688034	10692038	0	4	401,731,221,993	0,405,2430,3011
chr17	10691009	10692038	prostate_normal.38569	0	.	10691009	10692038	0	1	1029	0
chr17	10692307	10693228	H1_polyA+.76894	0	.	10692307	10693228	0	1	921	0
chr17	10702764	10703155	prostate_normal.38581	0	.	10702764	10703155	0	1	391	0
chr17	10702785	10703852	H1_polyA+.76900	0	.	10702785	10703852	0	1	1067	0
chr17	10703259	10703866	prostate_normal.38582	0	.	10703259	10703866	0	1	607	0
chr17	11816816	11817276	REMC_BreastStem.33642	0	.	11816816	11817276	0	1	460	0
chr17	11989170	11992341	REMC_MyoepithelialBreast.61586	0	.	11989170	11992341	0	1	3171	0
chr17	11993485	12002081	REMC_MyoepithelialBreast.61588	0	.	11993485	12002081	0	1	8596	0
chr17	11993489	12000688	REMC_LuminalBreast.66464	0	.	11993489	12000688	0	1	7199	0
chr17	11993511	11995734	B_cells_Cheung.129338	0	.	11993511	11995734	0	1	2223	0
chr17	11993594	11995988	REMC_BreastStem.33681	0	.	11993594	11995988	0	1	2394	0
chr17	11994232	11995219	B_Cells_Pritchard.2187159	0	.	11994232	11995219	0	1	987	0
chr17	11996056	11997072	REMC_BreastStem.33682	0	.	11996056	11997072	0	1	1016	0
chr17	11997187	11999420	REMC_BreastStem.33683	0	.	11997187	11999420	0	1	2233	0
chr17	12035822	12039796	A549_Myers.54787	0	+	12035822	12039796	0	2	48,353	0,3621
chr17	12409901	12410469	B_Cells_Pritchard.2188431	0	.	12409901	12410469	0	1	568	0
chr17	12469111	12469555	A549_Myers.54792	0	.	12469111	12469555	0	1	444	0
chr17	13620463	13623462	REMC_LuminalBreast.66501	0	.	13620463	13623462	0	1	2999	0
chr17	13620529	13623713	prostate_normal.38681	0	.	13620529	13623713	0	1	3184	0
chr17	13620694	13624654	prostate_carcinoma.65728	0	.	13620694	13624654	0	1	3960	0
chr17	13620718	13634356	B_cells_Cheung.129380	0	-	13620718	13634356	0	2	1351,46	0,13592
chr17	13620861	13623748	B_Cells_Pritchard.2191385	0	.	13620861	13623748	0	1	2887	0
chr17	13647387	13648412	REMC_LuminalBreast.66504	0	.	13647387	13648412	0	1	1025	0
chr17	13659958	13660322	H1_polyA+.77176	0	.	13659958	13660322	0	1	364	0
chr17	13715458	13715809	B_cells_Cheung.129407	0	.	13715458	13715809	0	1	351	0
chr17	13720461	13721289	B_Cells_Pritchard.2191751	0	.	13720461	13721289	0	1	828	0
chr17	13747476	13747996	B_Cells_Pritchard.2191797	0	.	13747476	13747996	0	1	520	0
chr17	13812649	13815437	B_cells_Cheung.129438	0	.	13812649	13815437	0	1	2788	0
chr17	13814229	13815197	H1_polyA+.77194	0	.	13814229	13815197	0	1	968	0
chr17	13827500	13828198	B_cells_Cheung.129447	0	.	13827500	13828198	0	1	698	0
chr17	13828995	13829757	B_Cells_Pritchard.2192121	0	.	13828995	13829757	0	1	762	0
chr17	13836821	13838945	H1_polyA+.77200	0	.	13836821	13838945	0	1	2124	0
chr17	13844393	13844817	B_cells_Cheung.129455	0	.	13844393	13844817	0	1	424	0
chr17	13859038	13861601	B_cells_Cheung.129467	0	.	13859038	13861601	0	1	2563	0
chr17	13861581	13863046	H1_polyA+.77205	0	.	13861581	13863046	0	1	1465	0
chr17	13873374	13878461	K562.29670	0	.	13873374	13878461	0	1	5087	0
chr17	13874791	13875472	H9_polyA+.29670	0	.	13874791	13875472	0	1	681	0
chr17	13876260	13876617	CD4_Plagnol_activated.42539	0	.	13876260	13876617	0	1	357	0
chr17	13880496	13881832	B_cells_Cheung.129478	0	.	13880496	13881832	0	1	1336	0
chr17	13889648	13897785	B_cells_Cheung.129483	0	.	13889648	13897785	0	1	8137	0
chr17	13891955	13892441	CD4_Plagnol_resting.41374	0	.	13891955	13892441	0	1	486	0
chr17	13892022	13892430	B_Cells_Pritchard.2192307	0	-	13892022	13892430	0	1	408	0
chr17	13905058	13907653	B_Cells_Pritchard.2192335	0	.	13905058	13907653	0	1	2595	0
chr17	13905326	13909595	MIP101.45327	0	.	13905326	13909595	0	1	4269	0
chr17	13905978	13907405	K562.29672	0	.	13905978	13907405	0	1	1427	0
chr17	13905990	13906541	HeLa_polyA+_Chen.24018	0	.	13905990	13906541	0	1	551	0
chr17	14054529	14062106	HIT000089382	0	+	14054529	14062106	0	3	78,225,1375	0,800,6202
chr17	14054529	14061964	ENST00000458492	0	+	14054529	14061964	0	3	78,221,1238	0,800,6197
chr17	14054587	14062048	B_cells_Cheung.129538	0	.	14054587	14062048	0	1	7461	0
chr17	14054928	14062020	B_Cells_Pritchard.2192813	0	.	14054928	14062020	0	1	7092	0
chr17	14055348	14067516	MIP101.45349	0	-	14055348	14067516	0	2	5330,419	0,11749
chr17	14055392	14056388	A549_Myers.54850	0	.	14055392	14056388	0	1	996	0
chr17	14056039	14056368	MB435_Burge.28256	0	.	14056039	14056368	0	1	329	0
chr17	14056597	14058682	REMC_MyoepithelialBreast.61679	0	.	14056597	14058682	0	1	2085	0
chr17	14056824	14062114	prostate_carcinoma.65760	0	.	14056824	14062114	0	1	5290	0
chr17	14063047	14064182	REMC_LuminalBreast.66527	0	.	14063047	14064182	0	1	1135	0
chr17	14063776	14064590	REMC_MyoepithelialBreast.61683	0	.	14063776	14064590	0	1	814	0
chr17	14063782	14065418	H1_polyA+.77222	0	.	14063782	14065418	0	1	1636	0
chr17	14064301	14065418	REMC_LuminalBreast.66528	0	.	14064301	14065418	0	1	1117	0
chr17	14064369	14065475	B_Cells_Pritchard.2192823	0	.	14064369	14065475	0	1	1106	0
chr17	14064924	14065552	B_cells_Cheung.129541	0	.	14064924	14065552	0	1	628	0
chr17	14065052	14065515	MIP101.45352	0	.	14065052	14065515	0	1	463	0
chr17	14065753	14067505	H1_polyA+.77223	0	.	14065753	14067505	0	1	1752	0
chr17	14066721	14067495	REMC_MyoepithelialBreast.61685	0	.	14066721	14067495	0	1	774	0
chr17	14066743	14067295	B_cells_Cheung.129544	0	.	14066743	14067295	0	1	552	0
chr17	14067602	14069128	B_cells_Cheung.129545	0	.	14067602	14069128	0	1	1526	0
chr17	14067765	14071255	MIP101.45354	0	.	14067765	14071255	0	1	3490	0
chr17	14067825	14070047	REMC_MyoepithelialBreast.61681	0	.	14067825	14070047	0	1	2222	0
chr17	14068139	14069061	B_Cells_Pritchard.2192837	0	-	14068139	14069061	0	1	922	0
chr17	14139552	14141642	Rinn_00025210	0	-	14139552	14141642	0	2	179,1708	0,382
chr17	14139553	14141642	ENST00000500420	0	-	14139553	14141642	0	2	178,1707	0,382
chr17	14139553	14141643	HIT000006884	0	-	14139553	14141643	0	2	178,1708	0,382
chr17	14141277	14141988	A549_Myers.54858	0	.	14141277	14141988	0	1	711	0
chr17	14143354	14143794	liver_polyA+.90096	0	.	14143354	14143794	0	1	440	0
chr17	14143374	14143998	A549_Myers.54860	0	.	14143374	14143998	0	1	624	0
chr17	14218091	14218473	liver_polyA+.90150	0	.	14218091	14218473	0	1	382	0
chr17	14218180	14265068	ENST00000436469	0	+	14218180	14265068	0	5	90,138,95,111,370	0,3145,7879,22923,46518
chr17	14225791	14226814	liver_polyA+.90156	0	.	14225791	14226814	0	1	1023	0
chr17	14226059	14226685	kidney_Gilad.58032	0	.	14226059	14226685	0	1	626	0
chr17	14226063	14226474	REMC_LuminalBreast.66540	0	.	14226063	14226474	0	1	411	0
chr17	14249292	14249833	liver_polyA+.90122	0	.	14249292	14249833	0	1	541	0
chr17	14259164	14269728	HepG2_Caltech_ENCODE.24490	0	.	14259164	14269728	0	1	10564	0
chr17	14278000	14279775	liver_polyA+.90191	0	.	14278000	14279775	0	1	1775	0
chr17	14289738	14291327	liver_polyA+.90148	0	-	14289738	14291327	0	2	62,1040	0,549
chr17	14290427	14291462	HepG2_Caltech_ENCODE.24517	0	.	14290427	14291462	0	1	1035	0
chr17	14292672	14293162	liver_polyA+.90171	0	.	14292672	14293162	0	1	490	0
chr17	14298849	14299527	liver_polyA+.90173	0	.	14298849	14299527	0	1	678	0
chr17	14309909	14311056	liver_polyA+.90202	0	.	14309909	14311056	0	1	1147	0
chr17	14321355	14327919	HepG2_Caltech_ENCODE.24524	0	.	14321355	14327919	0	1	6564	0
chr17	14321355	14334826	HepG2_Caltech_ENCODE.24523	0	+	14321355	14334826	0	2	1852,5581	0,7890
chr17	14326811	14329771	liver_polyA+.90218	0	+	14326811	14329771	0	3	985,878,639	0,1318,2321
chr17	14327549	14329771	kidney_Gilad.58084	0	+	14327549	14329771	0	3	247,878,639	0,580,1583
chr17	14328142	14329143	HepG2_Caltech_ENCODE.24525	0	.	14328142	14329143	0	1	1001	0
chr17	14345774	14354940	HepG2_Caltech_ENCODE.24531	0	.	14345774	14354940	0	1	9166	0
chr17	14351116	14352036	REMC_MyoepithelialBreast.61725	0	.	14351116	14352036	0	1	920	0
chr17	14364295	14366380	HepG2_Caltech_ENCODE.24530	0	.	14364295	14366380	0	1	2085	0
chr17	14366492	14371069	HepG2_Caltech_ENCODE.24532	0	.	14366492	14371069	0	1	4577	0
chr17	14384373	14387014	HepG2_Caltech_ENCODE.24538	0	.	14384373	14387014	0	1	2641	0
chr17	14391278	14391933	HepG2_Caltech_ENCODE.24540	0	.	14391278	14391933	0	1	655	0
chr17	14418700	14420415	HepG2_Caltech_ENCODE.24546	0	.	14418700	14420415	0	1	1715	0
chr17	14440957	14441615	HepG2_Caltech_ENCODE.24555	0	.	14440957	14441615	0	1	658	0
chr17	14448749	14450128	HepG2_Caltech_ENCODE.24559	0	.	14448749	14450128	0	1	1379	0
chr17	14464400	14469434	HepG2_Caltech_ENCODE.24563	0	.	14464400	14469434	0	1	5034	0
chr17	14697943	14698247	testes_Raymond.114803	0	.	14697943	14698247	0	1	304	0
chr17	14875015	14875998	Rinn_00025101	0	+	14875015	14875998	0	3	128,278,363	0,241,620
chr17	15111501	15116332	Rinn_00025211	0	-	15111501	15116332	0	2	1155,620	0,4211
chr17	15111502	15116332	ENST00000431343	0	-	15111502	15116332	0	2	1154,619	0,4211
chr17	15111502	15116333	HIT000023526	0	-	15111502	15116333	0	2	1154,620	0,4211
chr17	15246420	15246895	B_Cells_Pritchard.2195713	0	.	15246420	15246895	0	1	475	0
chr17	15250274	15251021	prostate_carcinoma.65777	0	.	15250274	15251021	0	1	747	0
chr17	15252747	15253662	REMC_LuminalBreast.66563	0	.	15252747	15253662	0	1	915	0
chr17	15263890	15265824	REMC_MyoepithelialBreast.63328	0	.	15263890	15265824	0	1	1934	0
chr17	15264158	15265884	REMC_LuminalBreast.67819	0	.	15264158	15265884	0	1	1726	0
chr17	15265044	15265858	H1_polyA+.77023	0	.	15265044	15265858	0	1	814	0
chr17	15273193	15276369	melanoma_Garraway_short_term_cultures.45089	0	.	15273193	15276369	0	1	3176	0
chr17	15273213	15277949	H9_polyA+.29695	0	.	15273213	15277949	0	1	4736	0
chr17	15273215	15274512	B_Cells_Pritchard.2195839	0	+	15273215	15274512	0	1	1297	0
chr17	15273346	15274044	MeI_Garraway.11759	0	.	15273346	15274044	0	1	698	0
chr17	15273349	15274031	CD4_Plagnol_activated.42568	0	.	15273349	15274031	0	1	682	0
chr17	15273352	15273853	MDAMB231_Thompson.14752	0	.	15273352	15273853	0	1	501	0
chr17	15273543	15276751	K562.29675	0	.	15273543	15276751	0	1	3208	0
chr17	15274269	15276867	MDAMB468_Thompson.15936	0	.	15274269	15276867	0	1	2598	0
chr17	15274587	15277705	brain_AmbionMAQC.29248	0	.	15274587	15277705	0	1	3118	0
chr17	15274631	15276372	B_cells_Cheung.129564	0	.	15274631	15276372	0	1	1741	0
chr17	15274658	15279578	B_Cells_Pritchard.2195843	0	+	15274658	15279578	0	2	3394,1327	0,3593
chr17	15274945	15275630	CD4_Plagnol_activated.42569	0	.	15274945	15275630	0	1	685	0
chr17	15274991	15275958	MDAMB231_Thompson.14753	0	.	15274991	15275958	0	1	967	0
chr17	15275277	15276435	MCF10A_Thompson.14265	0	.	15275277	15276435	0	1	1158	0
chr17	15275317	15277705	HeLa_polyA+_Chen.24024	0	.	15275317	15277705	0	1	2388	0
chr17	15276761	15277956	BT474_Burge_Thompson.21870	0	.	15276761	15277956	0	1	1195	0
chr17	15276769	15277936	B_cells_Cheung.129566	0	.	15276769	15277936	0	1	1167	0
chr17	15276945	15277953	melanoma_Garraway_short_term_cultures.45090	0	.	15276945	15277953	0	1	1008	0
chr17	15761633	15762265	A549_Myers.54962	0	.	15761633	15762265	0	1	632	0
chr17	15772142	15772679	B_Cells_Pritchard.2196633	0	.	15772142	15772679	0	1	537	0
chr17	15772560	15773626	REMC_LuminalBreast.66652	0	.	15772560	15773626	0	1	1066	0
chr17	15784394	15785302	REMC_LuminalBreast.66653	0	.	15784394	15785302	0	1	908	0
chr17	15786490	15787388	REMC_MyoepithelialBreast.61788	0	.	15786490	15787388	0	1	898	0
chr17	16174669	16175592	REMC_BreastStem.33826	0	.	16174669	16175592	0	1	923	0
chr17	16179290	16179790	B_cells_Cheung.129890	0	.	16179290	16179790	0	2	186,213	0,287
chr17	16183372	16183768	H1_polyA+.77907	0	.	16183372	16183768	0	1	396	0
chr17	16198824	16199585	REMC_MyoepithelialBreast.61892	0	.	16198824	16199585	0	1	761	0
chr17	16200876	16202043	REMC_LuminalBreast.66759	0	.	16200876	16202043	0	1	1167	0
chr17	16201713	16204915	REMC_MyoepithelialBreast.61895	0	.	16201713	16204915	0	1	3202	0
chr17	16206518	16207292	REMC_LuminalBreast.66764	0	.	16206518	16207292	0	1	774	0
chr17	16207930	16209562	REMC_LuminalBreast.66765	0	.	16207930	16209562	0	1	1632	0
chr17	16221543	16223367	REMC_LuminalBreast.66766	0	.	16221543	16223367	0	1	1824	0
chr17	16230439	16231197	B_cells_Cheung.129911	0	.	16230439	16231197	0	1	758	0
chr17	16231389	16234089	H1_polyA+.77278	0	.	16231389	16234089	0	1	2700	0
chr17	16234812	16236031	K562.29740	0	.	16234812	16236031	0	1	1219	0
chr17	16234813	16237384	H1_polyA+.77280	0	.	16234813	16237384	0	1	2571	0
chr17	16234845	16236092	B_cells_Cheung.129917	0	.	16234845	16236092	0	1	1247	0
chr17	16234891	16235824	REMC_LuminalBreast.66775	0	.	16234891	16235824	0	1	933	0
chr17	16235164	16235896	REMC_BreastStem.33835	0	.	16235164	16235896	0	1	732	0
chr17	16235248	16236062	H9_polyA+.29806	0	.	16235248	16236062	0	1	814	0
chr17	16250888	16251743	B_cells_Cheung.129925	0	.	16250888	16251743	0	1	855	0
chr17	16250927	16253746	B_Cells_Pritchard.2220747	0	+	16250927	16253746	0	2	849,385	0,2434
chr17	16251130	16251737	A549_Myers.55020	0	.	16251130	16251737	0	1	607	0
chr17	16251932	16252930	B_cells_Cheung.129926	0	.	16251932	16252930	0	1	998	0
chr17	16358115	16358619	B_cells_Cheung.129932	0	.	16358115	16358619	0	1	504	0
chr17	16358232	16358611	B_Cells_Pritchard.2197475	0	.	16358232	16358611	0	1	379	0
chr17	16371360	16372125	REMC_BreastStem.33839	0	.	16371360	16372125	0	1	765	0
chr17	16379662	16380174	Rinn_00025577	0	-	16379662	16380174	0	2	336,51	0,461
chr17	16379698	16380270	H1_polyA+.77283	0	.	16379698	16380270	0	1	572	0
chr17	16433086	16433872	A549_Myers.55064	0	.	16433086	16433872	0	1	786	0
chr17	16662050	16662660	MDAMB468_Thompson.15973	0	.	16662050	16662660	0	1	610	0
chr17	16717304	16718049	A549_Myers.55085	0	.	16717304	16718049	0	1	745	0
chr17	16732870	16733182	A549_Myers.55087	0	.	16732870	16733182	0	1	312	0
chr17	16755156	16755856	A549_Myers.55088	0	.	16755156	16755856	0	1	700	0
chr17	16762177	16762723	B_Cells_Pritchard.2198179	0	.	16762177	16762723	0	1	546	0
chr17	16766962	16767921	prostate_normal.38848	0	.	16766962	16767921	0	1	959	0
chr17	16766999	16767470	A549_Myers.55090	0	.	16766999	16767470	0	1	471	0
chr17	16770496	16771395	prostate_normal.38849	0	-	16770496	16771395	0	2	32,488	0,411
chr17	16770787	16771392	prostate_carcinoma.66075	0	.	16770787	16771392	0	1	605	0
chr17	16770938	16771529	CD4_Plagnol_resting.41489	0	.	16770938	16771529	0	1	591	0
chr17	16770983	16771371	A549_Myers.55092	0	.	16770983	16771371	0	1	388	0
chr17	16771117	16771560	lymph_node_Burge.32955	0	.	16771117	16771560	0	1	443	0
chr17	16772578	16773347	lymph_node_Burge.32956	0	.	16772578	16773347	0	1	769	0
chr17	16817688	16818258	B_cells_Cheung.130045	0	.	16817688	16818258	0	1	570	0
chr17	16819205	16826820	B_cells_Cheung.130047	0	-	16819205	16826820	0	3	2464,175,2581	0,2819,5034
chr17	16820037	16825392	ENST00000428142	0	-	16820037	16825392	0	3	1632,516,53	0,4202,5302
chr17	16820037	16825392	HIT000022053	0	-	16820037	16825392	0	3	1632,516,53	0,4202,5302
chr17	16820819	16821667	CD4_Plagnol_resting.41496	0	.	16820819	16821667	0	1	848	0
chr17	16821069	16821658	CD4_Plagnol_activated.42669	0	.	16821069	16821658	0	1	589	0
chr17	16823602	16826820	B_cells_Cheung.130046	0	.	16823602	16826820	0	1	3218	0
chr17	16828600	16830176	B_cells_Cheung.130051	0	.	16828600	16830176	0	1	1576	0
chr17	16830879	16831942	B_cells_Cheung.130053	0	.	16830879	16831942	0	1	1063	0
chr17	16835258	16836644	B_cells_Cheung.130054	0	.	16835258	16836644	0	1	1386	0
chr17	16838017	16838749	B_Cells_Pritchard.2198339	0	.	16838017	16838749	0	1	732	0
chr17	16839548	16840291	B_Cells_Pritchard.2198343	0	.	16839548	16840291	0	1	743	0
chr17	16841140	16842795	B_Cells_Pritchard.2198349	0	.	16841140	16842795	0	1	1655	0
chr17	16841775	16842669	B_cells_Cheung.130059	0	.	16841775	16842669	0	1	894	0
chr17	16842905	16847331	B_Cells_Pritchard.2198351	0	.	16842905	16847331	0	1	4426	0
chr17	16843103	16844765	B_cells_Cheung.130060	0	.	16843103	16844765	0	1	1662	0
chr17	16843699	16844024	A549_Myers.55104	0	.	16843699	16844024	0	1	325	0
chr17	16847307	16847665	B_cells_Cheung.130063	0	.	16847307	16847665	0	1	358	0
chr17	16847755	16848107	B_Cells_Pritchard.2198355	0	.	16847755	16848107	0	1	352	0
chr17	16848262	16849201	B_cells_Cheung.130065	0	.	16848262	16849201	0	1	939	0
chr17	16849345	16851698	B_Cells_Pritchard.2198359	0	+	16849345	16851698	0	2	253,1647	0,706
chr17	16849390	16849912	B_cells_Cheung.130066	0	.	16849390	16849912	0	1	522	0
chr17	16865084	16865580	A549_Myers.55111	0	.	16865084	16865580	0	1	496	0
chr17	16868458	16869395	A549_Myers.55116	0	.	16868458	16869395	0	1	937	0
chr17	16871361	16872030	REMC_LuminalBreast.66832	0	.	16871361	16872030	0	1	669	0
chr17	16871395	16871896	A549_Myers.55118	0	.	16871395	16871896	0	1	501	0
chr17	16872324	16879947	HeLa_polyA+_Chen.24116	0	+	16872324	16879947	0	3	391,381,1006	0,542,6617
chr17	16872355	16873632	HeLa_polyA-_Chen.12943	0	.	16872355	16873632	0	1	1277	0
chr17	16872779	16873391	HepG2_Caltech_ENCODE.24687	0	.	16872779	16873391	0	1	612	0
chr17	16872865	16875201	A549_Myers.55120	0	.	16872865	16875201	0	1	2336	0
chr17	16875544	16876432	HepG2_Caltech_ENCODE.24689	0	.	16875544	16876432	0	1	888	0
chr17	16875764	16876925	A549_Myers.55124	0	.	16875764	16876925	0	1	1161	0
chr17	16875775	16876513	HeLa_polyA-_Chen.12944	0	.	16875775	16876513	0	1	738	0
chr17	16875800	16876627	REMC_LuminalBreast.66834	0	.	16875800	16876627	0	1	827	0
chr17	16875824	16876505	HeLa_polyA+_Chen.24120	0	.	16875824	16876505	0	1	681	0
chr17	16877411	16885352	Rinn_00025579	0	-	16877411	16885352	0	2	660,106	0,7835
chr17	16879511	16880470	prostate_carcinoma.66086	0	.	16879511	16880470	0	1	959	0
chr17	16880257	16881378	B_cells_Cheung.130073	0	.	16880257	16881378	0	1	1121	0
chr17	16880362	16881140	B_Cells_Pritchard.2198457	0	+	16880362	16881140	0	1	778	0
chr17	16883537	16884311	A549_Myers.55129	0	.	16883537	16884311	0	1	774	0
chr17	17144879	17145452	A549_Myers.55207	0	.	17144879	17145452	0	1	573	0
chr17	17144984	17145877	B_cells_Cheung.130175	0	.	17144984	17145877	0	1	893	0
chr17	17145001	17145685	B_Cells_Pritchard.2198927	0	+	17145001	17145685	0	1	684	0
chr17	17194842	17195212	A549_Myers.55215	0	.	17194842	17195212	0	1	370	0
chr17	17195967	17196512	A549_Myers.55216	0	.	17195967	17196512	0	1	545	0
chr17	17197277	17197636	A549_Myers.55217	0	.	17197277	17197636	0	1	359	0
chr17	17198173	17198524	A549_Myers.55218	0	.	17198173	17198524	0	1	351	0
chr17	17248086	17248459	A549_Myers.55232	0	.	17248086	17248459	0	1	373	0
chr17	17264560	17264908	A549_Myers.55237	0	.	17264560	17264908	0	1	348	0
chr17	17265766	17266208	A549_Myers.55238	0	.	17265766	17266208	0	1	442	0
chr17	17268086	17268446	A549_Myers.55239	0	.	17268086	17268446	0	1	360	0
chr17	17268363	17269494	REMC_LuminalBreast.66846	0	.	17268363	17269494	0	1	1131	0
chr17	17275485	17276183	REMC_LuminalBreast.66848	0	.	17275485	17276183	0	1	698	0
chr17	17287372	17289957	REMC_LuminalBreast.66849	0	.	17287372	17289957	0	1	2585	0
chr17	17287398	17288422	prostate_carcinoma.66133	0	.	17287398	17288422	0	1	1024	0
chr17	17287534	17288361	prostate_normal.38886	0	.	17287534	17288361	0	1	827	0
chr17	17288925	17292535	HepG2_Caltech_ENCODE.24717	0	.	17288925	17292535	0	1	3610	0
chr17	17288927	17298252	HepG2_Caltech_ENCODE.24718	0	-	17288927	17298252	0	3	3239,196,202	0,5935,9123
chr17	17288991	17289882	prostate_carcinoma.66136	0	.	17288991	17289882	0	1	891	0
chr17	17289051	17289811	A549_Myers.55242	0	.	17289051	17289811	0	1	760	0
chr17	17289061	17289838	prostate_normal.38887	0	.	17289061	17289838	0	1	777	0
chr17	17290687	17291115	A549_Myers.55243	0	.	17290687	17291115	0	1	428	0
chr17	17292610	17293329	HepG2_Caltech_ENCODE.24719	0	.	17292610	17293329	0	1	719	0
chr17	17303935	17304356	BT474_Burge_Thompson.21964	0	.	17303935	17304356	0	1	421	0
chr17	17341279	17343261	B_Cells_Pritchard.2199225	0	+	17341279	17343261	0	1	1982	0
chr17	17343404	17344734	H1_polyA+.77372	0	.	17343404	17344734	0	1	1330	0
chr17	17343647	17344717	B_cells_Cheung.130210	0	.	17343647	17344717	0	1	1070	0
chr17	17343696	17345664	MIP101.45490	0	-	17343696	17345664	0	2	615,466	0,1502
chr17	17344867	17346883	REMC_LuminalBreast.66860	0	.	17344867	17346883	0	1	2016	0
chr17	17344920	17345683	H1_polyA+.77373	0	.	17344920	17345683	0	1	763	0
chr17	17345006	17345675	prostate_normal.38896	0	.	17345006	17345675	0	1	669	0
chr17	17345013	17345664	MIP101.45491	0	.	17345013	17345664	0	1	651	0
chr17	17436961	17437815	H1_polyA+.77391	0	.	17436961	17437815	0	1	854	0
chr17	17437142	17437839	B_Cells_Pritchard.2199389	0	+	17437142	17437839	0	1	697	0
chr17	17439145	17440161	B_Cells_Pritchard.2199397	0	+	17439145	17440161	0	1	1016	0
chr17	17439545	17440213	A549_Myers.55317	0	.	17439545	17440213	0	1	668	0
chr17	17439733	17440150	BT474_Burge_Thompson.21966	0	.	17439733	17440150	0	1	417	0
chr17	17441916	17442491	A549_Myers.55318	0	.	17441916	17442491	0	1	575	0
chr17	17448150	17449343	prostate_carcinoma.66165	0	.	17448150	17449343	0	1	1193	0
chr17	17450637	17451588	prostate_carcinoma.66167	0	.	17450637	17451588	0	1	951	0
chr17	17451064	17451605	B_Cells_Pritchard.2199451	0	.	17451064	17451605	0	1	541	0
chr17	17452976	17454131	prostate_carcinoma.66168	0	.	17452976	17454131	0	1	1155	0
chr17	17456068	17456656	B_Cells_Pritchard.2199473	0	.	17456068	17456656	0	1	588	0
chr17	17465554	17465924	prostate_carcinoma.66175	0	.	17465554	17465924	0	1	370	0
chr17	17467634	17468308	H1_polyA+.77397	0	.	17467634	17468308	0	1	674	0
chr17	17472513	17473044	B_Cells_Pritchard.2199535	0	.	17472513	17473044	0	1	531	0
chr17	17508620	17509113	A549_Myers.55328	0	.	17508620	17509113	0	1	493	0
chr17	17510165	17510661	A549_Myers.55329	0	.	17510165	17510661	0	1	496	0
chr17	17512860	17513559	A549_Myers.55331	0	.	17512860	17513559	0	1	699	0
chr17	17520316	17523914	REMC_LuminalBreast.66878	0	.	17520316	17523914	0	1	3598	0
chr17	17522366	17523028	B_cells_Cheung.130202	0	.	17522366	17523028	0	1	662	0
chr17	17522698	17523575	B_Cells_Pritchard.2199707	0	.	17522698	17523575	0	1	877	0
chr17	17683203	17683970	REMC_BreastStem.34369	0	.	17683203	17683970	0	1	767	0
chr17	17683213	17684255	B_cells_Cheung.130930	0	.	17683213	17684255	0	1	1042	0
chr17	17683283	17686194	B_Cells_Pritchard.2199843	0	+	17683283	17686194	0	7	361,424,349,95,718,292,491	0,411,835,1184,1345,2063,2420
chr17	17683742	17684233	HeLa_polyA-_Chen.13001	0	.	17683742	17684233	0	1	491	0
chr17	17683770	17685025	A549_Myers.57759	0	.	17683770	17685025	0	1	1255	0
chr17	17684808	17686135	prostate_carcinoma.66618	0	.	17684808	17686135	0	1	1327	0
chr17	17685703	17686091	A549_Myers.57761	0	.	17685703	17686091	0	1	388	0
chr17	17919097	17919532	A549_Myers.55483	0	.	17919097	17919532	0	1	435	0
chr17	18060727	18061204	CD4_Plagnol_activated.43287	0	.	18060727	18061204	0	1	477	0
chr17	18111360	18112409	HepG2_Caltech_ENCODE.24881	0	.	18111360	18112409	0	1	1049	0
chr17	18111392	18112379	brain_AmbionMAQC.29456	0	.	18111392	18112379	0	1	987	0
chr17	18111403	18112101	HeLa_polyA+_Chen.24208	0	.	18111403	18112101	0	1	698	0
chr17	18111406	18112993	prostate_carcinoma.66846	0	.	18111406	18112993	0	1	1587	0
chr17	18111437	18111997	BT20_Thompson.14425	0	.	18111437	18111997	0	1	560	0
chr17	18111440	18113277	T47D_Burge_Thompson.19617	0	.	18111440	18113277	0	1	1837	0
chr17	18111461	18112290	MCF7_Burge_Thompson.20709	0	.	18111461	18112290	0	1	829	0
chr17	18111676	18112933	REMC_BreastStem.34005	0	.	18111676	18112933	0	1	1257	0
chr17	18111680	18112239	liver_polyA+.90664	0	.	18111680	18112239	0	1	559	0
chr17	18111741	18113293	CD4_Plagnol_activated.43336	0	.	18111741	18113293	0	2	807,475	0,1077
chr17	18112109	18112781	BT474_Burge_Thompson.22241	0	.	18112109	18112781	0	1	672	0
chr17	18113729	18114515	K562.29875	0	.	18113729	18114515	0	1	786	0
chr17	18113895	18114990	MDAMB468_Thompson.16040	0	.	18113895	18114990	0	1	1095	0
chr17	18114228	18114571	liver_polyA+.90665	0	.	18114228	18114571	0	1	343	0
chr17	18368604	18370885	NR_026809	0	-	18368604	18370885	0	1	2281	0
chr17	18369241	18370864	HIT000335840	0	-	18369241	18370864	0	1	1623	0
chr17	18776517	18778064	REMC_MyoepithelialBreast.62206	0	.	18776517	18778064	0	1	1547	0
chr17	18791363	18793120	REMC_MyoepithelialBreast.62208	0	.	18791363	18793120	0	1	1757	0
chr17	19248596	19252708	brain_AmbionMAQC.29517	0	.	19248596	19252708	0	1	4112	0
chr17	19249234	19249712	A549_Myers.55705	0	.	19249234	19249712	0	1	478	0
chr17	19249277	19249929	prostate_carcinoma.66457	0	.	19249277	19249929	0	1	652	0
chr17	19251579	19252074	A549_Myers.55706	0	.	19251579	19252074	0	1	495	0
chr17	19268527	19269341	brain_AmbionMAQC.29519	0	.	19268527	19269341	0	1	814	0
chr17	19281546	19283386	REMC_MyoepithelialBreast.62287	0	.	19281546	19283386	0	1	1840	0
chr17	19282632	19284685	REMC_LuminalBreast.67094	0	.	19282632	19284685	0	1	2053	0
chr17	19286460	19287794	brain_AmbionMAQC.29536	0	.	19286460	19287794	0	1	1334	0
chr17	19287884	19288302	brain_AmbionMAQC.29537	0	.	19287884	19288302	0	1	418	0
chr17	19300994	19302296	ENST00000435953	0	-	19300994	19302296	0	2	228,297	0,1005
chr17	19314705	19315041	H1_rRNA-depleted_UCSD_REMC.58650	0	.	19314705	19315041	0	1	336	0
chr17	19341850	19342739	H1_polyA+.77603	0	.	19341850	19342739	0	1	889	0
chr17	19351156	19352165	A549_Myers.55725	0	.	19351156	19352165	0	1	1009	0
chr17	19352312	19352762	A549_Myers.55727	0	.	19352312	19352762	0	1	450	0
chr17	19376083	19376563	prostate_carcinoma.66465	0	.	19376083	19376563	0	1	480	0
chr17	19376083	19376565	B_Cells_Pritchard.2202431	0	+	19376083	19376565	0	1	482	0
chr17	19484432	19485439	MIP101.45771	0	.	19484432	19485439	0	1	1007	0
chr17	19484947	19485935	REMC_MyoepithelialBreast.62299	0	.	19484947	19485935	0	1	988	0
chr17	19488793	19490398	REMC_MyoepithelialBreast.62300	0	.	19488793	19490398	0	1	1605	0
chr17	19562963	19566054	HIT000045585	0	+	19562963	19566054	0	1	3091	0
chr17	19563417	19564516	REMC_MyoepithelialBreast.62317	0	.	19563417	19564516	0	1	1099	0
chr17	19563455	19563916	B_Cells_Pritchard.2202945	0	.	19563455	19563916	0	1	461	0
chr17	19563560	19565483	A549_Myers.55759	0	.	19563560	19565483	0	1	1923	0
chr17	19564135	19565867	MIP101.45786	0	.	19564135	19565867	0	1	1732	0
chr17	19571929	19572721	REMC_MyoepithelialBreast.62319	0	.	19571929	19572721	0	1	792	0
chr17	19579967	19580524	MIP101.45787	0	.	19579967	19580524	0	1	557	0
chr17	19601521	19602029	A549_Myers.55775	0	.	19601521	19602029	0	1	508	0
chr17	19601701	19602356	B_Cells_Pritchard.2203085	0	.	19601701	19602356	0	1	655	0
chr17	19603565	19604325	A549_Myers.55777	0	.	19603565	19604325	0	1	760	0
chr17	19605977	19606836	A549_Myers.55778	0	.	19605977	19606836	0	1	859	0
chr17	19735636	19736657	REMC_BreastStem.34182	0	.	19735636	19736657	0	1	1021	0
chr17	19740924	19741848	CD4_Snyder.50125	0	.	19740924	19741848	0	1	924	0
chr17	19740985	19741811	MeI_Garraway.11850	0	.	19740985	19741811	0	1	826	0
chr17	19742459	19742895	B_Cells_Pritchard.2203729	0	-	19742459	19742895	0	1	436	0
chr17	19742476	19742896	H1_polyA+.77637	0	.	19742476	19742896	0	1	420	0
chr17	19742486	19742893	CD4_Plagnol_resting.41933	0	.	19742486	19742893	0	1	407	0
chr17	19742497	19743049	B_cells_Cheung.130691	0	.	19742497	19743049	0	1	552	0
chr17	19742503	19742882	CD4_Plagnol_activated.42944	0	.	19742503	19742882	0	1	379	0
chr17	19742515	19743048	brain_AmbionMAQC.29563	0	.	19742515	19743048	0	1	533	0
chr17	19744437	19745281	H9_polyA+.30006	0	.	19744437	19745281	0	1	844	0
chr17	19746915	19747251	CD4_Plagnol_resting.41937	0	.	19746915	19747251	0	1	336	0
chr17	19746916	19747271	brain_AmbionMAQC.29567	0	.	19746916	19747271	0	1	355	0
chr17	19823667	19825003	H1_polyA+.77665	0	.	19823667	19825003	0	1	1336	0
chr17	19836745	19837050	A549_Myers.55819	0	.	19836745	19837050	0	1	305	0
chr17	20159786	20161165	REMC_BreastStem.34190	0	.	20159786	20161165	0	1	1379	0
chr17	20160485	20161066	MDAMB231_Thompson.14882	0	.	20160485	20161066	0	1	581	0
chr17	20160629	20161053	B_Cells_Pritchard.2204999	0	-	20160629	20161053	0	1	424	0
chr17	20160629	20161071	H9_polyA+.30015	0	.	20160629	20161071	0	1	442	0
chr17	20160639	20161056	T47D_Burge_Thompson.19442	0	.	20160639	20161056	0	1	417	0
chr17	20160712	20161051	A549_Myers.55858	0	.	20160712	20161051	0	1	339	0
chr17	20161386	20161796	MDAMB231_Thompson.14883	0	.	20161386	20161796	0	1	410	0
chr17	20741731	20748573	K562.30042	0	-	20741731	20748573	0	2	5228,166	0,6676
chr17	20743192	20747921	H9_polyA+.30067	0	-	20743192	20747921	0	3	261,308,1418	0,2828,3311
chr17	20745941	20746352	HepG2_Caltech_ENCODE.24957	0	.	20745941	20746352	0	1	411	0
chr17	20745952	20746855	BT20_Thompson.14916	0	.	20745952	20746855	0	1	903	0
chr17	20745993	20746348	REMC_BreastStem.34199	0	.	20745993	20746348	0	1	355	0
chr17	20745993	20746306	REMC_LuminalBreast.67164	0	.	20745993	20746306	0	1	313	0
chr17	20745993	20746306	REMC_MyoepithelialBreast.62428	0	.	20745993	20746306	0	1	313	0
chr17	20746296	20785236	pHIT000116741	0	-	20746296	20785236	0	2	395,232	0,38708
chr17	20746970	20747457	BT20_Thompson.14917	0	.	20746970	20747457	0	1	487	0
chr17	20748102	20748485	H1_polyA+.78230	0	.	20748102	20748485	0	1	383	0
chr17	20748106	20748491	H9_polyA+.30071	0	.	20748106	20748491	0	1	385	0
chr17	20751701	20753441	H9_polyA+.30075	0	.	20751701	20753441	0	1	1740	0
chr17	20751878	20753777	K562.30061	0	.	20751878	20753777	0	1	1899	0
chr17	20752333	20752732	A549_Myers.55876	0	.	20752333	20752732	0	1	399	0
chr17	20764928	20773638	Rinn_00025161	0	+	20764928	20773638	0	3	146,476,304	0,3334,8406
chr17	20773659	20783438	HIT000264855	0	+	20773659	20783438	0	3	213,179,1441	0,1838,8338
chr17	20777211	20781522	H1_polyA+.78245	0	.	20777211	20781522	0	1	4311	0
chr17	20777211	20787057	H1_polyA+.78244	0	-	20777211	20787057	0	2	100,4957	0,4889
chr17	20781601	20783502	HepG2_Caltech_ENCODE.24964	0	.	20781601	20783502	0	1	1901	0
chr17	20781626	20787057	H1_polyA+.78246	0	.	20781626	20787057	0	1	5431	0
chr17	20781811	20782226	A549_Myers.55877	0	.	20781811	20782226	0	1	415	0
chr17	20781875	20783561	BT20_Thompson.14919	0	.	20781875	20783561	0	1	1686	0
chr17	20782017	20783086	HIT000387685	0	+	20782017	20783086	0	1	1069	0
chr17	20791362	20793755	HepG2_Caltech_ENCODE.24968	0	.	20791362	20793755	0	1	2393	0
chr17	20791365	20796876	H1_polyA+.78248	0	.	20791365	20796876	0	1	5511	0
chr17	20807108	20813236	H1_polyA+.78254	0	.	20807108	20813236	0	1	6128	0
chr17	20813374	20815715	H1_polyA+.78255	0	.	20813374	20815715	0	1	2341	0
chr17	20816683	20822483	H1_polyA+.78257	0	.	20816683	20822483	0	1	5800	0
chr17	20823128	20824544	HepG2_Caltech_ENCODE.24978	0	.	20823128	20824544	0	1	1416	0
chr17	20823143	20827827	H1_polyA+.78259	0	.	20823143	20827827	0	1	4684	0
chr17	20823619	20824772	B_cells_Cheung.130827	0	.	20823619	20824772	0	1	1153	0
chr17	20824945	20826131	B_cells_Cheung.130828	0	.	20824945	20826131	0	1	1186	0
chr17	20825011	20826671	prostate_carcinoma.66795	0	.	20825011	20826671	0	1	1660	0
chr17	20825109	20825797	prostate_normal.39167	0	.	20825109	20825797	0	1	688	0
chr17	20825409	20826144	H9_polyA+.30080	0	.	20825409	20826144	0	1	735	0
chr17	20825411	20827072	REMC_LuminalBreast.67166	0	.	20825411	20827072	0	1	1661	0
chr17	20825577	20826336	NEC_from_H9.49925	0	.	20825577	20826336	0	1	759	0
chr17	20830488	20833233	B_cells_Cheung.130830	0	.	20830488	20833233	0	1	2745	0
chr17	20830503	20832544	prostate_carcinoma.66797	0	.	20830503	20832544	0	1	2041	0
chr17	20830592	20832551	prostate_normal.39301	0	.	20830592	20832551	0	1	1959	0
chr17	20830658	20831202	H9_polyA+.30082	0	.	20830658	20831202	0	1	544	0
chr17	20830686	20832549	B_Cells_Pritchard.2205873	0	.	20830686	20832549	0	1	1863	0
chr17	20831680	20833504	NEC_from_H9.49942	0	+	20831680	20833504	0	4	666,200,113,624	0,702,1075,1200
chr17	20832828	20833138	prostate_normal.39302	0	.	20832828	20833138	0	1	310	0
chr17	20833355	20841375	B_cells_Cheung.130831	0	.	20833355	20841375	0	1	8020	0
chr17	20834546	20835784	H9_polyA+.30087	0	.	20834546	20835784	0	1	1238	0
chr17	20835244	20835729	NEC_from_H9.49932	0	.	20835244	20835729	0	1	485	0
chr17	20835344	20837042	REMC_LuminalBreast.67168	0	.	20835344	20837042	0	1	1698	0
chr17	20835449	20836632	REMC_MyoepithelialBreast.62470	0	.	20835449	20836632	0	1	1183	0
chr17	20835839	20838221	NEC_from_H9.49934	0	-	20835839	20838221	0	2	396,142	0,2240
chr17	20835986	20836994	H9_polyA+.30088	0	.	20835986	20836994	0	1	1008	0
chr17	20837068	20839120	H9_polyA+.30089	0	.	20837068	20839120	0	1	2052	0
chr17	20837632	20838829	REMC_LuminalBreast.67169	0	.	20837632	20838829	0	1	1197	0
chr17	20838331	20838780	NEC_from_H9.49933	0	.	20838331	20838780	0	1	449	0
chr17	20838341	20838828	A549_Myers.55885	0	.	20838341	20838828	0	1	487	0
chr17	20839175	20839579	H9_polyA+.30090	0	.	20839175	20839579	0	1	404	0
chr17	20839476	20840586	REMC_LuminalBreast.67170	0	.	20839476	20840586	0	1	1110	0
chr17	20839716	20841586	H9_polyA+.30091	0	.	20839716	20841586	0	1	1870	0
chr17	20840813	20841229	NEC_from_H9.49940	0	.	20840813	20841229	0	1	416	0
chr17	20842092	20842465	A549_Myers.55886	0	.	20842092	20842465	0	1	373	0
chr17	21039595	21040660	CD4_Plagnol_activated.42995	0	.	21039595	21040660	0	1	1065	0
chr17	21039641	21040617	prostate_carcinoma.66651	0	.	21039641	21040617	0	1	976	0
chr17	21059841	21068580	prostate_carcinoma.66653	0	+	21059841	21068580	0	2	495,608	0,8131
chr17	21059846	21060301	prostate_normal.39180	0	.	21059846	21060301	0	1	455	0
chr17	21063035	21063575	HepG2_Caltech_ENCODE.24903	0	.	21063035	21063575	0	1	540	0
chr17	21064016	21068578	REMC_LuminalBreast.67228	0	.	21064016	21068578	0	1	4562	0
chr17	21064082	21068422	H1_polyA+.77975	0	.	21064082	21068422	0	1	4340	0
chr17	21064215	21070600	prostate_carcinoma.66658	0	-	21064215	21070600	0	2	258,438	0,5947
chr17	21064856	21068784	B_cells_Cheung.130859	0	.	21064856	21068784	0	1	3928	0
chr17	21064878	21067859	MIP101.45903	0	.	21064878	21067859	0	1	2981	0
chr17	21064878	21067757	MIP101.45904	0	-	21064878	21067757	0	2	2302,29	0,2850
chr17	21065096	21068580	prostate_carcinoma.66654	0	.	21065096	21068580	0	1	3484	0
chr17	21066354	21068566	REMC_MyoepithelialBreast.62458	0	.	21066354	21068566	0	1	2212	0
chr17	21066450	21068193	B_Cells_Pritchard.2206637	0	-	21066450	21068193	0	1	1743	0
chr17	21067431	21068220	prostate_normal.39187	0	.	21067431	21068220	0	1	789	0
chr17	21070177	21070723	B_cells_Cheung.130861	0	.	21070177	21070723	0	1	546	0
chr17	21070202	21070609	B_Cells_Pritchard.2206641	0	-	21070202	21070609	0	1	407	0
chr17	21071761	21077091	prostate_normal.39189	0	-	21071761	21077091	0	2	638,25	0,5305
chr17	21072779	21073283	melanoma_Garraway_short_term_cultures.45589	0	.	21072779	21073283	0	1	504	0
chr17	21072812	21073526	prostate_carcinoma.66657	0	.	21072812	21073526	0	1	714	0
chr17	21074262	21077602	B_cells_Cheung.130863	0	.	21074262	21077602	0	1	3340	0
chr17	21076126	21076852	T47D_Burge_Thompson.19478	0	.	21076126	21076852	0	1	726	0
chr17	21077136	21078507	B_Cells_Pritchard.2206649	0	.	21077136	21078507	0	1	1371	0
chr17	21077152	21078292	HepG2_Caltech_ENCODE.24905	0	.	21077152	21078292	0	1	1140	0
chr17	21077168	21078631	REMC_LuminalBreast.67230	0	.	21077168	21078631	0	1	1463	0
chr17	21077214	21078582	melanoma_Garraway_short_term_cultures.45590	0	.	21077214	21078582	0	1	1368	0
chr17	21077221	21079786	REMC_MyoepithelialBreast.62460	0	.	21077221	21079786	0	1	2565	0
chr17	21077283	21077887	BT474_Burge_Thompson.22095	0	.	21077283	21077887	0	1	604	0
chr17	21077637	21078188	MIP101.45907	0	.	21077637	21078188	0	1	551	0
chr17	21077670	21078560	B_cells_Cheung.130864	0	.	21077670	21078560	0	1	890	0
chr17	21077876	21078587	H1_polyA+.77978	0	.	21077876	21078587	0	1	711	0
chr17	21077956	21078393	HeLa_polyA+_Chen.24324	0	.	21077956	21078393	0	1	437	0
chr17	21078808	21081661	B_cells_Cheung.130865	0	.	21078808	21081661	0	1	2853	0
chr17	21078836	21080294	melanoma_Garraway_short_term_cultures.45591	0	.	21078836	21080294	0	1	1458	0
chr17	21078851	21080340	K562.30009	0	.	21078851	21080340	0	1	1489	0
chr17	21079203	21080341	HeLa_polyA+_Chen.24325	0	.	21079203	21080341	0	1	1138	0
chr17	21079599	21080023	MCF7_Burge_Thompson.20753	0	.	21079599	21080023	0	1	424	0
chr17	21079642	21080406	HepG2_Caltech_ENCODE.24906	0	.	21079642	21080406	0	1	764	0
chr17	21079791	21080329	BT474_Burge_Thompson.22096	0	.	21079791	21080329	0	1	538	0
chr17	21079804	21080295	prostate_normal.39190	0	.	21079804	21080295	0	1	491	0
chr17	21118135	21119449	melanoma_Garraway_short_term_cultures.45596	0	.	21118135	21119449	0	1	1314	0
chr17	21118170	21119713	HepG2_Caltech_ENCODE.24910	0	.	21118170	21119713	0	1	1543	0
chr17	21118172	21119753	H1_polyA+.77987	0	.	21118172	21119753	0	1	1581	0
chr17	21118202	21118795	B_cells_Cheung.130872	0	.	21118202	21118795	0	1	593	0
chr17	21118238	21118676	prostate_carcinoma.66665	0	.	21118238	21118676	0	1	438	0
chr17	21118270	21118684	H9_polyA+.30105	0	.	21118270	21118684	0	1	414	0
chr17	21118276	21118653	A549_Myers.55938	0	.	21118276	21118653	0	1	377	0
chr17	21118276	21118695	brain_AmbionMAQC.29636	0	.	21118276	21118695	0	1	419	0
chr17	21118301	21118645	prostate_normal.39196	0	.	21118301	21118645	0	1	344	0
chr17	21118846	21119747	MDAMB231_Thompson.14912	0	.	21118846	21119747	0	1	901	0
chr17	21118847	21119741	B_cells_Cheung.130873	0	.	21118847	21119741	0	1	894	0
chr17	21118858	21119735	brain_AmbionMAQC.29637	0	.	21118858	21119735	0	1	877	0
chr17	21118877	21119737	T47D_Burge_Thompson.19482	0	.	21118877	21119737	0	1	860	0
chr17	21118883	21119747	prostate_carcinoma.66666	0	.	21118883	21119747	0	1	864	0
chr17	21118998	21119735	H9_polyA+.30106	0	.	21118998	21119735	0	1	737	0
chr17	21119896	21121830	H1_polyA+.77988	0	.	21119896	21121830	0	1	1934	0
chr17	21120041	21120462	B_cells_Cheung.130874	0	.	21120041	21120462	0	1	421	0
chr17	21120880	21121385	brain_AmbionMAQC.29638	0	.	21120880	21121385	0	1	505	0
chr17	21122125	21123035	brain_AmbionMAQC.29639	0	.	21122125	21123035	0	1	910	0
chr17	21160156	21161067	A549_Myers.55964	0	.	21160156	21161067	0	1	911	0
chr17	21160557	21161335	B_Cells_Pritchard.2206769	0	.	21160557	21161335	0	1	778	0
chr17	21160586	21182959	REMC_LuminalBreast.67244	0	.	21160586	21182959	0	1	22373	0
chr17	21160709	21161858	REMC_BreastStem.34238	0	.	21160709	21161858	0	1	1149	0
chr17	21160834	21168928	REMC_MyoepithelialBreast.62478	0	.	21160834	21168928	0	1	8094	0
chr17	21161549	21162312	B_Cells_Pritchard.2206771	0	.	21161549	21162312	0	1	763	0
chr17	21161716	21162104	B_cells_Cheung.130882	0	.	21161716	21162104	0	1	388	0
chr17	21161736	21162669	A549_Myers.55965	0	.	21161736	21162669	0	1	933	0
chr17	21162112	21163920	REMC_BreastStem.34239	0	.	21162112	21163920	0	1	1808	0
chr17	21163262	21163897	A549_Myers.55966	0	.	21163262	21163897	0	1	635	0
chr17	21164746	21165284	B_Cells_Pritchard.2206785	0	.	21164746	21165284	0	1	538	0
chr17	21167284	21167812	B_Cells_Pritchard.2206797	0	.	21167284	21167812	0	1	528	0
chr17	21168978	21173541	REMC_MyoepithelialBreast.62479	0	.	21168978	21173541	0	1	4563	0
chr17	21169871	21171106	REMC_BreastStem.34240	0	.	21169871	21171106	0	1	1235	0
chr17	21174025	21175350	REMC_MyoepithelialBreast.62480	0	.	21174025	21175350	0	1	1325	0
chr17	21174522	21175157	B_Cells_Pritchard.2206823	0	.	21174522	21175157	0	1	635	0
chr17	21177298	21180167	REMC_MyoepithelialBreast.62482	0	.	21177298	21180167	0	1	2869	0
chr17	21177397	21180119	REMC_BreastStem.34242	0	.	21177397	21180119	0	1	2722	0
chr17	21180680	21181384	B_Cells_Pritchard.2206849	0	.	21180680	21181384	0	1	704	0
chr17	21182884	21183307	B_Cells_Pritchard.2206855	0	.	21182884	21183307	0	1	423	0
chr17	21186819	21188688	A549_Myers.55984	0	.	21186819	21188688	0	1	1869	0
chr17	21188925	21189280	B_Cells_Pritchard.2206885	0	.	21188925	21189280	0	1	355	0
chr17	21189429	21192704	REMC_LuminalBreast.67249	0	.	21189429	21192704	0	1	3275	0
chr17	21189970	21190321	A549_Myers.55986	0	.	21189970	21190321	0	1	351	0
chr17	21192803	21194200	REMC_LuminalBreast.67250	0	.	21192803	21194200	0	1	1397	0
chr17	21196268	21197989	REMC_LuminalBreast.67252	0	.	21196268	21197989	0	1	1721	0
chr17	21198056	21201370	REMC_LuminalBreast.67253	0	.	21198056	21201370	0	1	3314	0
chr17	21201704	21202559	REMC_LuminalBreast.67254	0	.	21201704	21202559	0	1	855	0
chr17	21202853	21204773	REMC_LuminalBreast.67255	0	.	21202853	21204773	0	1	1920	0
chr17	21205503	21207282	REMC_LuminalBreast.67256	0	.	21205503	21207282	0	1	1779	0
chr17	21215671	21216159	A549_Myers.55993	0	.	21215671	21216159	0	1	488	0
chr17	21217548	21218090	A549_Myers.55995	0	.	21217548	21218090	0	1	542	0
chr17	21265847	21266314	A549_Myers.56035	0	.	21265847	21266314	0	1	467	0
chr17	21266787	21267335	A549_Myers.56036	0	.	21266787	21267335	0	1	548	0
chr17	21268601	21268979	brain_AmbionMAQC.29645	0	.	21268601	21268979	0	1	378	0
chr17	21300417	21304120	HIT000011375	0	-	21300417	21304120	0	1	3703	0
chr17	21301713	21302071	prostate_carcinoma.66682	0	.	21301713	21302071	0	1	358	0
chr17	21307316	21308160	brain_AmbionMAQC.29649	0	.	21307316	21308160	0	1	844	0
chr17	21354586	21355063	brain_AmbionMAQC.29651	0	.	21354586	21355063	0	1	477	0
chr17	21355249	21356388	brain_AmbionMAQC.29689	0	.	21355249	21356388	0	1	1139	0
chr17	21455385	21456553	K562.30021	0	.	21455385	21456553	0	1	1168	0
chr17	21492368	21492746	BT474_Burge_Thompson.22148	0	.	21492368	21492746	0	1	378	0
chr17	21717157	21738156	HIT000295595	0	-	21717157	21738156	0	3	244,121,1149	0,18580,19850
chr17	21736314	21738950	HIT000006611	0	-	21736314	21738950	0	1	2636	0
chr17	21783095	21844343	pHIT000116760	0	+	21783095	21844343	0	4	53,135,131,151	0,4890,23442,61097
chr17	21828117	21828453	K562.30036	0	.	21828117	21828453	0	1	336	0
chr17	21828188	21837197	NR_027084	0	+	21828188	21837197	0	2	151,3647	0,5362
chr17	21828188	21837214	HIT000095529	0	+	21828188	21837214	0	2	151,3664	0,5362
chr17	21830088	21830649	K562.30037	0	.	21830088	21830649	0	1	561	0
chr17	21832594	21833009	K562.30038	0	.	21832594	21833009	0	1	415	0
chr17	21833639	21837081	K562.30039	0	.	21833639	21837081	0	1	3442	0
chr17	21833640	21835152	MeI_Garraway.11879	0	.	21833640	21835152	0	1	1512	0
chr17	21833667	21834959	B_Cells_Pritchard.2207743	0	.	21833667	21834959	0	1	1292	0
chr17	21833698	21834819	B_cells_Cheung.130899	0	.	21833698	21834819	0	1	1121	0
chr17	21834468	21837197	HIT000018186	0	-	21834468	21837197	0	1	2729	0
chr17	21835086	21835455	B_Cells_Pritchard.2207745	0	.	21835086	21835455	0	1	369	0
chr17	21835369	21836458	B_cells_Cheung.130900	0	.	21835369	21836458	0	1	1089	0
chr17	21835759	21836214	B_Cells_Pritchard.2207749	0	.	21835759	21836214	0	1	455	0
chr17	21858845	21862489	HIT000047983	0	+	21858845	21862489	0	1	3644	0
chr17	21860535	21861242	melanoma_Garraway_short_term_cultures.45605	0	.	21860535	21861242	0	1	707	0
chr17	21943087	21943462	melanoma_Garraway_short_term_cultures.45607	0	.	21943087	21943462	0	1	375	0
chr17	21957037	21976198	pHIT000028789	0	-	21957037	21976198	0	2	154,233	0,18928
chr17	21957037	22005452	pHIT000090804	0	-	21957037	22005452	0	3	154,233,93	0,18928,48322
chr17	22116135	22118868	XR_037004	0	-	22116135	22118868	0	5	197,666,298,259,205	0,634,1300,1629,2528
chr17	22116135	22118868	XR_037978	0	-	22116135	22118868	0	5	178,721,298,259,205	0,579,1300,1629,2528
chr17	22116542	22118868	XR_037607	0	-	22116542	22118868	0	4	893,246,290,205	0,893,1191,2121
chr17	22127150	22127678	A549_Myers.56050	0	.	22127150	22127678	0	1	528	0
chr17	22287291	22287629	BT474_Burge_Thompson.22149	0	.	22287291	22287629	0	1	338	0
chr17	22287810	22289825	BT474_Burge_Thompson.22150	0	.	22287810	22289825	0	1	2015	0
chr17	22288073	22289784	A549_Myers.56056	0	-	22288073	22289784	0	2	262,661	0,1050
chr17	22288204	22289070	CD4_Snyder.50196	0	.	22288204	22289070	0	1	866	0
chr17	22288968	22289807	B_Cells_Pritchard.2208107	0	+	22288968	22289807	0	2	409,51	0,788
chr17	22288992	22289361	ZR751_Thompson.16271	0	.	22288992	22289361	0	1	369	0
chr17	22290331	22291198	BT474_Burge_Thompson.22151	0	.	22290331	22291198	0	1	867	0
chr17	22291361	22292158	BT474_Burge_Thompson.22152	0	.	22291361	22292158	0	1	797	0
chr17	22291457	22292273	B_Cells_Pritchard.2208119	0	.	22291457	22292273	0	1	816	0
chr17	22291617	22292065	CD4_Snyder.50199	0	.	22291617	22292065	0	1	448	0
chr17	22291859	22292176	A549_Myers.56057	0	.	22291859	22292176	0	1	317	0
chr17	22303525	22304000	B_cells_Cheung.130961	0	.	22303525	22304000	0	1	475	0
chr17	22303530	22303859	B_Cells_Pritchard.2208131	0	.	22303530	22303859	0	1	329	0
chr17	22433978	22434317	CD4_Plagnol_activated.43015	0	.	22433978	22434317	0	1	339	0
chr17	22435052	22435405	MCF7_Burge_Thompson.20777	0	.	22435052	22435405	0	1	353	0
chr17	22439398	22439783	K562.30199	0	.	22439398	22439783	0	1	385	0
chr17	22440696	22441145	K562.30097	0	.	22440696	22441145	0	1	449	0
chr17	22440709	22441065	BT20_Thompson.14535	0	.	22440709	22441065	0	1	356	0
chr17	22440709	22520707	BT20_Thompson.14536	0	+	22440709	22520707	0	3	324,49,354	0,6808,79644
chr17	22440709	22441105	melanoma_Garraway_short_term_cultures.45634	0	.	22440709	22441105	0	1	396	0
chr17	22474421	22475345	K562.30114	0	.	22474421	22475345	0	1	924	0
chr17	22503633	22505510	BT20_Thompson.14543	0	.	22503633	22505510	0	1	1877	0
chr17	22505563	22511019	BT20_Thompson.14544	0	.	22505563	22511019	0	1	5456	0
chr17	22507179	22510739	K562.30134	0	.	22507179	22510739	0	1	3560	0
chr17	22588872	22592876	T47D_Burge_Thompson.19494	0	.	22588872	22592876	0	1	4004	0
chr17	22589894	22590235	prostate_normal.39226	0	.	22589894	22590235	0	1	341	0
chr17	22669013	22671928	REMC_BreastStem.34243	0	.	22669013	22671928	0	1	2915	0
chr17	22669231	22671846	B_cells_Cheung.130976	0	.	22669231	22671846	0	1	2615	0
chr17	22670712	22671384	MIP101.45931	0	.	22670712	22671384	0	1	672	0
chr17	22670955	22671290	A549_Myers.56080	0	.	22670955	22671290	0	1	335	0
chr17	22672117	22680888	REMC_BreastStem.34244	0	.	22672117	22680888	0	1	8771	0
chr17	22672177	22681590	REMC_MyoepithelialBreast.62500	0	.	22672177	22681590	0	1	9413	0
chr17	22672206	22693694	REMC_LuminalBreast.67334	0	.	22672206	22693694	0	1	21488	0
chr17	22681370	22683778	REMC_BreastStem.34245	0	.	22681370	22683778	0	1	2408	0
chr17	22681723	22693676	REMC_MyoepithelialBreast.62501	0	.	22681723	22693676	0	1	11953	0
chr17	22683469	22684609	A549_Myers.56082	0	.	22683469	22684609	0	1	1140	0
chr17	22683966	22684611	MCF7_Burge_Thompson.20782	0	.	22683966	22684611	0	1	645	0
chr17	22684179	22684636	CD4_Snyder.50218	0	.	22684179	22684636	0	1	457	0
chr17	22686899	22688094	REMC_BreastStem.34247	0	.	22686899	22688094	0	1	1195	0
chr17	22687290	22698523	B_Cells_Pritchard.2208767	0	+	22687290	22698523	0	2	779,163	0,11070
chr17	22687352	22688041	prostate_carcinoma.66717	0	.	22687352	22688041	0	1	689	0
chr17	22688645	22691816	REMC_BreastStem.34248	0	.	22688645	22691816	0	1	3171	0
chr17	22689966	22690625	B_cells_Cheung.130989	0	.	22689966	22690625	0	1	659	0
chr17	22691978	22692808	B_cells_Cheung.130991	0	.	22691978	22692808	0	1	830	0
chr17	22692146	22692798	melanoma_Garraway_short_term_cultures.45648	0	.	22692146	22692798	0	1	652	0
chr17	22693869	22698561	REMC_MyoepithelialBreast.62502	0	.	22693869	22698561	0	1	4692	0
chr17	22693878	22698571	REMC_LuminalBreast.67335	0	.	22693878	22698571	0	1	4693	0
chr17	22693896	22696968	H1_polyA+.78026	0	.	22693896	22696968	0	1	3072	0
chr17	22694178	22697129	K562.30149	0	.	22694178	22697129	0	1	2951	0
chr17	22694197	22694763	prostate_normal.39240	0	.	22694197	22694763	0	1	566	0
chr17	22694929	22697095	REMC_BreastStem.34251	0	.	22694929	22697095	0	1	2166	0
chr17	22695068	22696840	prostate_carcinoma.66721	0	.	22695068	22696840	0	1	1772	0
chr17	22695895	22696849	melanoma_Garraway_short_term_cultures.45650	0	.	22695895	22696849	0	1	954	0
chr17	22695923	22696588	B_cells_Cheung.130995	0	.	22695923	22696588	0	1	665	0
chr17	22695935	22697284	HepG2_Caltech_ENCODE.24984	0	.	22695935	22697284	0	1	1349	0
chr17	22696036	22696670	H9_polyA-_Chen.9597	0	.	22696036	22696670	0	1	634	0
chr17	22696124	22696909	MCF7_Burge_Thompson.20787	0	.	22696124	22696909	0	1	785	0
chr17	22698851	22700297	REMC_LuminalBreast.67336	0	.	22698851	22700297	0	1	1446	0
chr17	22698948	22700231	H1_polyA+.78028	0	.	22698948	22700231	0	1	1283	0
chr17	22699753	22700523	HepG2_Caltech_ENCODE.24987	0	.	22699753	22700523	0	1	770	0
chr17	22700135	22700822	A549_Myers.56086	0	.	22700135	22700822	0	1	687	0
chr17	22700142	22700684	MCF7_Burge_Thompson.20789	0	.	22700142	22700684	0	1	542	0
chr17	22700701	22701270	REMC_LuminalBreast.67337	0	.	22700701	22701270	0	1	569	0
chr17	22700743	22702355	H1_polyA+.78029	0	.	22700743	22702355	0	1	1612	0
chr17	22700865	22706490	REMC_MyoepithelialBreast.62494	0	.	22700865	22706490	0	1	5625	0
chr17	22704470	22705921	A549_Myers.56091	0	.	22704470	22705921	0	1	1451	0
chr17	22705092	22706463	REMC_BreastStem.34255	0	.	22705092	22706463	0	1	1371	0
chr17	22705150	22706431	REMC_LuminalBreast.67339	0	.	22705150	22706431	0	1	1281	0
chr17	22713964	22714445	A549_Myers.56093	0	.	22713964	22714445	0	1	481	0
chr17	22731163	22731697	B_cells_Cheung.131001	0	.	22731163	22731697	0	1	534	0
chr17	22807145	22807623	A549_Myers.56107	0	.	22807145	22807623	0	1	478	0
chr17	22975979	22977543	ZR751_Thompson.16283	0	.	22975979	22977543	0	1	1564	0
chr17	22976116	22977401	colon_Burge.25388	0	.	22976116	22977401	0	1	1285	0
chr17	22976118	22976582	kidney_Gilad.58743	0	.	22976118	22976582	0	1	464	0
chr17	22977824	22980655	H1_polyA+.78123	0	.	22977824	22980655	0	1	2831	0
chr17	23281130	23282001	Rinn_00025338	0	+	23281130	23282001	0	2	668,41	0,830
chr17	23323332	23324114	K562.30176	0	.	23323332	23324114	0	1	782	0
chr17	23557735	23558055	melanoma_Garraway_short_term_cultures.45676	0	.	23557735	23558055	0	1	320	0
chr17	23761638	23764629	REMC_MyoepithelialBreast.62638	0	+	23761638	23764629	0	2	818,2060	0,931
chr17	23761638	23764629	REMC_MyoepithelialBreast.62639	0	.	23761638	23764629	0	1	2991	0
chr17	23761823	23764804	REMC_LuminalBreast.67473	0	.	23761823	23764804	0	1	2981	0
chr17	23762379	23764690	REMC_BreastStem.34299	0	.	23762379	23764690	0	1	2311	0
chr17	23850132	23850597	A549_Myers.56240	0	.	23850132	23850597	0	1	465	0
chr17	23851430	23852165	B_Cells_Pritchard.2211581	0	.	23851430	23852165	0	1	735	0
chr17	23851503	23852004	B_cells_Cheung.131155	0	.	23851503	23852004	0	1	501	0
chr17	23852326	23853575	B_Cells_Pritchard.2211583	0	+	23852326	23853575	0	1	1249	0
chr17	23852378	23853507	B_cells_Cheung.131156	0	+	23852378	23853507	0	2	284,371	0,758
chr17	23852378	23853507	B_cells_Cheung.131157	0	.	23852378	23853507	0	1	1129	0
chr17	23856643	23856953	A549_Myers.56241	0	.	23856643	23856953	0	1	310	0
chr17	24411238	24412581	H1_polyA+.78335	0	.	24411238	24412581	0	1	1343	0
chr17	24411249	24415607	REMC_LuminalBreast.67516	0	.	24411249	24415607	0	1	4358	0
chr17	24411293	24411699	B_Cells_Pritchard.2212629	0	.	24411293	24411699	0	1	406	0
chr17	24412221	24412757	B_Cells_Pritchard.2212633	0	.	24412221	24412757	0	1	536	0
chr17	24412418	24414627	REMC_MyoepithelialBreast.62684	0	.	24412418	24414627	0	1	2209	0
chr17	24413051	24414031	liver_polyA+.91397	0	.	24413051	24414031	0	1	980	0
chr17	24413116	24414289	B_Cells_Pritchard.2212635	0	.	24413116	24414289	0	1	1173	0
chr17	24415790	24418905	REMC_LuminalBreast.67517	0	.	24415790	24418905	0	1	3115	0
chr17	24417470	24419082	B_cells_Cheung.131244	0	.	24417470	24419082	0	1	1612	0
chr17	24417731	24418938	REMC_MyoepithelialBreast.62686	0	.	24417731	24418938	0	1	1207	0
chr17	24418351	24418812	liver_polyA+.91398	0	.	24418351	24418812	0	1	461	0
chr17	24419309	24420354	REMC_MyoepithelialBreast.62687	0	.	24419309	24420354	0	1	1045	0
chr17	24419333	24420587	B_Cells_Pritchard.2212653	0	-	24419333	24420587	0	1	1254	0
chr17	24419503	24420420	B_cells_Cheung.131245	0	.	24419503	24420420	0	1	917	0
chr17	24419512	24420406	liver_polyA+.91399	0	.	24419512	24420406	0	1	894	0
chr17	24419656	24420456	CD4_Plagnol_resting.42113	0	.	24419656	24420456	0	1	800	0
chr17	24419881	24420285	HeLa_polyA+_Chen.24468	0	.	24419881	24420285	0	1	404	0
chr17	24419968	24420428	melanoma_Garraway_short_term_cultures.45825	0	.	24419968	24420428	0	1	460	0
chr17	24420501	24421827	REMC_MyoepithelialBreast.62688	0	.	24420501	24421827	0	1	1326	0
chr17	24420924	24423418	B_Cells_Pritchard.2212657	0	-	24420924	24423418	0	1	2494	0
chr17	24422104	24423342	brain_AmbionMAQC.29787	0	.	24422104	24423342	0	1	1238	0
chr17	24559220	24559884	REMC_LuminalBreast.67567	0	.	24559220	24559884	0	1	664	0
chr17	24565122	24567550	REMC_LuminalBreast.67525	0	.	24565122	24567550	0	1	2428	0
chr17	24568517	24569163	REMC_MyoepithelialBreast.62698	0	.	24568517	24569163	0	1	646	0
chr17	24576466	24578001	REMC_LuminalBreast.67527	0	.	24576466	24578001	0	1	1535	0
chr17	24579475	24583525	REMC_MyoepithelialBreast.62703	0	.	24579475	24583525	0	1	4050	0
chr17	24579655	24582676	REMC_LuminalBreast.67529	0	.	24579655	24582676	0	1	3021	0
chr17	24584248	24586005	REMC_LuminalBreast.67531	0	.	24584248	24586005	0	1	1757	0
chr17	24584446	24586136	REMC_MyoepithelialBreast.62704	0	.	24584446	24586136	0	1	1690	0
chr17	24587000	24588264	REMC_MyoepithelialBreast.62706	0	.	24587000	24588264	0	1	1264	0
chr17	24587889	24588247	REMC_LuminalBreast.67533	0	.	24587889	24588247	0	1	358	0
chr17	24588467	24595598	REMC_MyoepithelialBreast.62707	0	.	24588467	24595598	0	1	7131	0
chr17	24588560	24591087	REMC_BreastStem.34397	0	.	24588560	24591087	0	1	2527	0
chr17	24588562	24591087	REMC_LuminalBreast.67534	0	.	24588562	24591087	0	1	2525	0
chr17	24591159	24595589	REMC_LuminalBreast.67535	0	.	24591159	24595589	0	1	4430	0
chr17	24591232	24594463	REMC_BreastStem.34398	0	.	24591232	24594463	0	1	3231	0
chr17	24594573	24595565	REMC_BreastStem.34399	0	.	24594573	24595565	0	1	992	0
chr17	24702613	24702950	B_Cells_Pritchard.2213227	0	+	24702613	24702950	0	1	337	0
chr17	24702630	24703036	B_cells_Cheung.131286	0	.	24702630	24703036	0	1	406	0
chr17	24704218	24704583	B_cells_Cheung.131288	0	.	24704218	24704583	0	1	365	0
chr17	24711574	24712068	B_cells_Cheung.131295	0	.	24711574	24712068	0	1	494	0
chr17	24720704	24721440	T47D_Burge_Thompson.19595	0	.	24720704	24721440	0	1	736	0
chr17	24723722	24724932	B_cells_Cheung.131311	0	.	24723722	24724932	0	1	1210	0
chr17	24732762	24735185	B_cells_Cheung.131316	0	.	24732762	24735185	0	4	337,183,229,246	0,413,1103,2177
chr17	24903548	24907562	B_Cells_Pritchard.2213551	0	-	24903548	24907562	0	4	531,235,316,1516	0,1092,1332,2498
chr17	24906001	24907443	HeLa_polyA+_Chen.24481	0	.	24906001	24907443	0	1	1442	0
chr17	24906077	24907391	REMC_MyoepithelialBreast.62766	0	.	24906077	24907391	0	1	1314	0
chr17	24906132	24907332	REMC_LuminalBreast.67568	0	.	24906132	24907332	0	1	1200	0
chr17	24906441	24907566	melanoma_Garraway_short_term_cultures.45853	0	.	24906441	24907566	0	1	1125	0
chr17	24906866	24907576	CD4_Plagnol_resting.42175	0	.	24906866	24907576	0	1	710	0
chr17	24906967	24907575	prostate_carcinoma.66942	0	.	24906967	24907575	0	1	608	0
chr17	24906982	24907506	A549_Myers.56359	0	.	24906982	24907506	0	1	524	0
chr17	24907780	24909742	HeLa_polyA+_Chen.24482	0	.	24907780	24909742	0	1	1962	0
chr17	24907805	24909524	H1_polyA+.78380	0	.	24907805	24909524	0	1	1719	0
chr17	24909367	24909703	CD4_Plagnol_resting.42178	0	.	24909367	24909703	0	1	336	0
chr17	25540188	25540996	REMC_MyoepithelialBreast.62903	0	.	25540188	25540996	0	1	808	0
chr17	25588785	25589933	B_Cells_Pritchard.2215207	0	.	25588785	25589933	0	1	1148	0
chr17	25592212	25592894	B_Cells_Pritchard.2215217	0	.	25592212	25592894	0	1	682	0
chr17	25593027	25593906	CD4_Plagnol_activated.43464	0	.	25593027	25593906	0	1	879	0
chr17	25644598	25645583	B_cells_Cheung.131598	0	.	25644598	25645583	0	1	985	0
chr17	25645749	25647108	MIP101.46194	0	.	25645749	25647108	0	1	1359	0
chr17	25645806	25647215	B_cells_Cheung.131599	0	.	25645806	25647215	0	1	1409	0
chr17	25645823	25646883	prostate_carcinoma.67017	0	.	25645823	25646883	0	1	1060	0
chr17	25645837	25649334	B_Cells_Pritchard.2215297	0	+	25645837	25649334	0	4	1087,186,322,1466	0,1174,1629,2031
chr17	25649431	25649928	B_cells_Cheung.131602	0	.	25649431	25649928	0	1	497	0
chr17	25880838	25881679	B_Cells_Pritchard.2216003	0	+	25880838	25881679	0	1	841	0
chr17	25894307	25895677	REMC_LuminalBreast.67695	0	.	25894307	25895677	0	1	1370	0
chr17	25894600	25895489	MIP101.46218	0	.	25894600	25895489	0	1	889	0
chr17	25899290	25899730	A549_Myers.56427	0	.	25899290	25899730	0	1	440	0
chr17	25901073	25902064	MIP101.46222	0	.	25901073	25902064	0	1	991	0
chr17	25901955	25902887	REMC_LuminalBreast.67697	0	.	25901955	25902887	0	1	932	0
chr17	25903800	25904536	B_cells_Cheung.131625	0	.	25903800	25904536	0	1	736	0
chr17	25904032	25904459	prostate_carcinoma.67035	0	.	25904032	25904459	0	1	427	0
chr17	25905287	25905619	B_cells_Cheung.131627	0	.	25905287	25905619	0	1	332	0
chr17	25907252	25907812	MIP101.46224	0	.	25907252	25907812	0	1	560	0
chr17	25908020	25908760	B_cells_Cheung.131630	0	.	25908020	25908760	0	1	740	0
chr17	25915183	25916720	HIT000056667	0	-	25915183	25916720	0	1	1537	0
chr17	26409842	26410906	REMC_MyoepithelialBreast.63096	0	.	26409842	26410906	0	1	1064	0
chr17	26413211	26414187	REMC_BreastStem.34527	0	.	26413211	26414187	0	1	976	0
chr17	26426050	26427222	REMC_MyoepithelialBreast.63100	0	.	26426050	26427222	0	1	1172	0
chr17	26428618	26431810	REMC_MyoepithelialBreast.63101	0	.	26428618	26431810	0	1	3192	0
chr17	26430101	26430624	B_cells_Cheung.131918	0	.	26430101	26430624	0	1	523	0
chr17	26441883	26442440	K562.30489	0	.	26441883	26442440	0	1	557	0
chr17	26441910	26442461	HepG2_Caltech_ENCODE.25133	0	.	26441910	26442461	0	1	551	0
chr17	26441934	26442264	T47D_Burge_Thompson.19655	0	.	26441934	26442264	0	1	330	0
chr17	26736379	26740052	H1_polyA+.78891	0	.	26736379	26740052	0	1	3673	0
chr17	26737581	26741587	REMC_MyoepithelialBreast.63164	0	.	26737581	26741587	0	1	4006	0
chr17	26739160	26740428	MIP101.46469	0	.	26739160	26740428	0	1	1268	0
chr17	26739598	26741664	REMC_LuminalBreast.68089	0	.	26739598	26741664	0	1	2066	0
chr17	26898084	26901145	B_cells_Cheung.132033	0	.	26898084	26901145	0	1	3061	0
chr17	26898453	26901095	REMC_LuminalBreast.67900	0	.	26898453	26901095	0	1	2642	0
chr17	26899852	26901479	B_Cells_Pritchard.2218555	0	.	26899852	26901479	0	1	1627	0
chr17	26899884	26901054	H1_polyA+.78894	0	.	26899884	26901054	0	1	1170	0
chr17	26899941	26901021	prostate_carcinoma.67215	0	.	26899941	26901021	0	1	1080	0
chr17	26899975	26901027	prostate_normal.39521	0	.	26899975	26901027	0	1	1052	0
chr17	26899988	26901657	A549_Myers.56549	0	.	26899988	26901657	0	1	1669	0
chr17	26900157	26901096	T47D_Burge_Thompson.19663	0	.	26900157	26901096	0	1	939	0
chr17	26900195	26900694	brain_AmbionMAQC.29906	0	.	26900195	26900694	0	1	499	0
chr17	26900210	26901096	CD4_Plagnol_activated.43566	0	.	26900210	26901096	0	1	886	0
chr17	26900210	26901080	HeLa_polyA+_Chen.24597	0	.	26900210	26901080	0	1	870	0
chr17	26900393	26900954	BT474_Burge_Thompson.22361	0	.	26900393	26900954	0	1	561	0
chr17	26900550	26900989	MB435_Burge.28998	0	.	26900550	26900989	0	1	439	0
chr17	26902630	26904290	REMC_LuminalBreast.67902	0	.	26902630	26904290	0	1	1660	0
chr17	26903296	26904282	REMC_BreastStem.34543	0	.	26903296	26904282	0	1	986	0
chr17	26904427	26910273	REMC_LuminalBreast.67904	0	.	26904427	26910273	0	1	5846	0
chr17	26904452	26910243	REMC_BreastStem.34545	0	.	26904452	26910243	0	1	5791	0
chr17	26909054	26909790	REMC_MyoepithelialBreast.63172	0	.	26909054	26909790	0	1	736	0
chr17	26909423	26909826	A549_Myers.56553	0	.	26909423	26909826	0	1	403	0
chr17	26911385	26914118	REMC_MyoepithelialBreast.63173	0	.	26911385	26914118	0	1	2733	0
chr17	26911567	26912227	H1_polyA+.78895	0	.	26911567	26912227	0	1	660	0
chr17	26912570	26912882	B_Cells_Pritchard.2218597	0	.	26912570	26912882	0	1	312	0
chr17	26913665	26914528	REMC_BreastStem.34546	0	.	26913665	26914528	0	1	863	0
chr17	26915026	26915650	BT474_Burge_Thompson.22366	0	.	26915026	26915650	0	1	624	0
chr17	26919394	26920513	REMC_MyoepithelialBreast.63177	0	.	26919394	26920513	0	1	1119	0
chr17	26919418	26919844	BT474_Burge_Thompson.22368	0	.	26919418	26919844	0	1	426	0
chr17	26919446	26919801	A549_Myers.56556	0	.	26919446	26919801	0	1	355	0
chr17	26934187	26943921	REMC_LuminalBreast.67909	0	.	26934187	26943921	0	1	9734	0
chr17	26934969	26937010	prostate_carcinoma.67224	0	.	26934969	26937010	0	1	2041	0
chr17	26935489	26944786	A549_Myers.56562	0	-	26935489	26944786	0	2	221,161	0,9136
chr17	26944052	26952850	REMC_LuminalBreast.67911	0	.	26944052	26952850	0	1	8798	0
chr17	26949896	26950244	BT474_Burge_Thompson.22376	0	.	26949896	26950244	0	1	348	0
chr17	26953173	26956585	REMC_LuminalBreast.67912	0	.	26953173	26956585	0	1	3412	0
chr17	26965362	26966158	REMC_BreastStem.34555	0	.	26965362	26966158	0	1	796	0
chr17	26975586	26976494	REMC_LuminalBreast.67906	0	.	26975586	26976494	0	1	908	0
chr17	27121054	27123302	K562.30431	0	.	27121054	27123302	0	1	2248	0
chr17	27177203	27177717	A549_Myers.56568	0	.	27177203	27177717	0	1	514	0
chr17	27358164	27358741	A549_Myers.56589	0	.	27358164	27358741	0	1	577	0
chr17	27358533	27358864	MCF7_Burge_Thompson.20963	0	.	27358533	27358864	0	1	331	0
chr17	27454535	27455340	H9_polyA+.30400	0	.	27454535	27455340	0	1	805	0
chr17	27584193	27584540	B_cells_Cheung.132317	0	.	27584193	27584540	0	1	347	0
chr17	27584495	27584884	A549_Myers.56609	0	.	27584495	27584884	0	1	389	0
chr17	27591169	27592131	B_cells_Cheung.132319	0	.	27591169	27592131	0	1	962	0
chr17	27595965	27596900	H1_polyA+.79030	0	.	27595965	27596900	0	1	935	0
chr17	27597319	27597708	B_cells_Cheung.132320	0	.	27597319	27597708	0	1	389	0
chr17	27605683	27606517	H1_polyA+.79337	0	.	27605683	27606517	0	1	834	0
chr17	27607013	27616300	H1_polyA+.79338	0	-	27607013	27616300	0	2	3161,423	0,8864
chr17	27607013	27610337	H1_polyA+.79339	0	.	27607013	27610337	0	1	3324	0
chr17	27607243	27607881	NEC_from_H9.50617	0	.	27607243	27607881	0	1	638	0
chr17	27609263	27610139	H9_polyA+.30411	0	.	27609263	27610139	0	1	876	0
chr17	27732091	27734394	CD4_Snyder.50750	0	.	27732091	27734394	0	1	2303	0
chr17	27733500	27733844	NEC_from_H9.50658	0	.	27733500	27733844	0	1	344	0
chr17	27740754	27741437	kidney_Gilad.59390	0	+	27740754	27741437	0	2	388,84	0,599
chr17	27742455	27746503	B_cells_Cheung.132379	0	.	27742455	27746503	0	1	4048	0
chr17	27743582	27745713	H1_polyA+.79369	0	.	27743582	27745713	0	1	2131	0
chr17	27746605	27748252	B_cells_Cheung.132380	0	.	27746605	27748252	0	1	1647	0
chr17	27746744	27765152	HepG2_Caltech_ENCODE.25218	0	-	27746744	27765152	0	2	1231,77	0,18331
chr17	27746837	27748224	melanoma_Garraway_short_term_cultures.46191	0	.	27746837	27748224	0	1	1387	0
chr17	27746837	27748218	CD4_Plagnol_activated.43780	0	.	27746837	27748218	0	1	1381	0
chr17	27747152	27748244	HepG2_Caltech_ENCODE.25219	0	.	27747152	27748244	0	1	1092	0
chr17	27747171	27748043	kidney_Gilad.59401	0	-	27747171	27748043	0	2	143,562	0,310
chr17	27752841	27756167	HepG2_Caltech_ENCODE.25222	0	.	27752841	27756167	0	1	3326	0
chr17	27756078	27759235	B_Cells_Pritchard.2220909	0	-	27756078	27759235	0	5	234,370,765,30,371	0,507,1542,2324,2786
chr17	27757621	27758401	liver_polyA+.92194	0	.	27757621	27758401	0	1	780	0
chr17	27757646	27758322	brain_AmbionMAQC.30000	0	.	27757646	27758322	0	1	676	0
chr17	27757647	27758409	MIP101.47038	0	.	27757647	27758409	0	1	762	0
chr17	27758067	27758401	kidney_Gilad.59405	0	.	27758067	27758401	0	1	334	0
chr17	27761403	27762674	B_cells_Cheung.132323	0	.	27761403	27762674	0	1	1271	0
chr17	27762169	27762807	CD4_Plagnol_resting.42512	0	.	27762169	27762807	0	1	638	0
chr17	27762859	27763610	B_cells_Cheung.132324	0	.	27762859	27763610	0	1	751	0
chr17	27763482	27780909	prostate_carcinoma.67318	0	+	27763482	27780909	0	2	86,246	0,17181
chr17	27763619	27767090	REMC_MyoepithelialBreast.63636	0	.	27763619	27767090	0	1	3471	0
chr17	27765210	27765922	HepG2_Caltech_ENCODE.25223	0	.	27765210	27765922	0	1	712	0
chr17	27765272	27765825	brain_AmbionMAQC.30003	0	.	27765272	27765825	0	1	553	0
chr17	27766197	27767205	B_cells_Cheung.132327	0	.	27766197	27767205	0	1	1008	0
chr17	27766222	27778151	REMC_LuminalBreast.68254	0	.	27766222	27778151	0	1	11929	0
chr17	27766236	27766966	CD4_Plagnol_resting.42514	0	.	27766236	27766966	0	1	730	0
chr17	27766457	27766968	prostate_normal.39590	0	.	27766457	27766968	0	1	511	0
chr17	27768728	27770180	B_cells_Cheung.132331	0	.	27768728	27770180	0	1	1452	0
chr17	27772562	27773136	REMC_MyoepithelialBreast.63640	0	.	27772562	27773136	0	1	574	0
chr17	27773240	27773561	B_cells_Cheung.132338	0	.	27773240	27773561	0	1	321	0
chr17	27773245	27773673	REMC_MyoepithelialBreast.63641	0	.	27773245	27773673	0	1	428	0
chr17	27774727	27775503	CD4_Plagnol_resting.42518	0	.	27774727	27775503	0	1	776	0
chr17	27775151	27775697	BT474_Burge_Thompson.22409	0	.	27775151	27775697	0	1	546	0
chr17	27775153	27775709	REMC_MyoepithelialBreast.63643	0	.	27775153	27775709	0	1	556	0
chr17	27775737	27776640	B_cells_Cheung.132341	0	.	27775737	27776640	0	1	903	0
chr17	27775935	27776670	REMC_MyoepithelialBreast.63644	0	.	27775935	27776670	0	1	735	0
chr17	27778264	27782055	REMC_MyoepithelialBreast.63646	0	.	27778264	27782055	0	1	3791	0
chr17	27778284	27783110	REMC_LuminalBreast.68255	0	.	27778284	27783110	0	1	4826	0
chr17	27781031	27781666	B_cells_Cheung.132347	0	.	27781031	27781666	0	1	635	0
chr17	27781041	27781444	brain_AmbionMAQC.29966	0	.	27781041	27781444	0	1	403	0
chr17	27783333	27791160	REMC_LuminalBreast.68256	0	.	27783333	27791160	0	1	7827	0
chr17	27788618	27791210	REMC_MyoepithelialBreast.63650	0	.	27788618	27791210	0	1	2592	0
chr17	27790636	27792289	B_Cells_Pritchard.2534557	0	-	27790636	27792289	0	2	433,344	0,1309
chr17	27791896	27792589	B_cells_Cheung.132358	0	.	27791896	27792589	0	1	693	0
chr17	27791943	27792436	CD4_Plagnol_resting.42524	0	.	27791943	27792436	0	1	493	0
chr17	27834824	27835671	REMC_MyoepithelialBreast.63652	0	.	27834824	27835671	0	1	847	0
chr17	28294652	28295277	melanoma_Garraway_short_term_cultures.46250	0	.	28294652	28295277	0	1	625	0
chr17	28294677	28295349	K562.30520	0	.	28294677	28295349	0	1	672	0
chr17	28296696	28299071	REMC_MyoepithelialBreast.63311	0	.	28296696	28299071	0	1	2375	0
chr17	28297558	28298367	H1_polyA+.79100	0	.	28297558	28298367	0	1	809	0
chr17	29517594	29520511	H1_polyA+.79238	0	.	29517594	29520511	0	1	2917	0
chr17	29558386	29559319	REMC_LuminalBreast.68093	0	.	29558386	29559319	0	1	933	0
chr17	29561600	29561903	REMC_LuminalBreast.68096	0	.	29561600	29561903	0	1	303	0
chr17	29567088	29572328	REMC_LuminalBreast.68101	0	.	29567088	29572328	0	1	5240	0
chr17	29567088	29574246	REMC_LuminalBreast.68102	0	-	29567088	29574246	0	2	3465,123	0,7035
chr17	29574469	29579815	REMC_LuminalBreast.68103	0	.	29574469	29579815	0	1	5346	0
chr17	29589614	29592039	REMC_LuminalBreast.68107	0	.	29589614	29592039	0	1	2425	0
chr17	29594229	29599544	REMC_LuminalBreast.68108	0	.	29594229	29599544	0	1	5315	0
chr17	29599665	29601436	REMC_LuminalBreast.68109	0	.	29599665	29601436	0	1	1771	0
chr17	29776251	29776606	A549_Myers.56730	0	.	29776251	29776606	0	1	355	0
chr17	29814130	29814563	A549_Myers.56731	0	.	29814130	29814563	0	1	433	0
chr17	29997110	29997536	A549_Myers.56746	0	.	29997110	29997536	0	1	426	0
chr17	30002395	30002977	A549_Myers.56747	0	.	30002395	30002977	0	1	582	0
chr17	30086884	30088031	prostate_carcinoma.67419	0	.	30086884	30088031	0	1	1147	0
chr17	30091768	30093508	prostate_carcinoma.67421	0	.	30091768	30093508	0	1	1740	0
chr17	30109727	30110627	REMC_MyoepithelialBreast.63381	0	.	30109727	30110627	0	1	900	0
chr17	30109879	30111660	prostate_carcinoma.67423	0	.	30109879	30111660	0	1	1781	0
chr17	30110560	30111320	prostate_normal.39650	0	.	30110560	30111320	0	1	760	0
chr17	30156718	30157631	REMC_MyoepithelialBreast.63382	0	.	30156718	30157631	0	1	913	0
chr17	30164431	30165374	REMC_MyoepithelialBreast.63383	0	.	30164431	30165374	0	1	943	0
chr17	30243719	30244301	A549_Myers.56753	0	.	30243719	30244301	0	1	582	0
chr17	30262749	30263282	B_Cells_Pritchard.2226537	0	.	30262749	30263282	0	1	533	0
chr17	30441914	30443273	B_cells_Cheung.132415	0	.	30441914	30443273	0	1	1359	0
chr17	30442197	30443405	REMC_LuminalBreast.68241	0	.	30442197	30443405	0	1	1208	0
chr17	30445396	30446412	ZR751_Thompson.16456	0	.	30445396	30446412	0	1	1016	0
chr17	30448837	30449687	MCF7_Burge_Thompson.20997	0	.	30448837	30449687	0	1	850	0
chr17	30448841	30449693	BT20_Thompson.14715	0	.	30448841	30449693	0	1	852	0
chr17	30448842	30449730	MDAMB231_Thompson.15136	0	.	30448842	30449730	0	1	888	0
chr17	30448881	30449414	REMC_BreastStem.34676	0	.	30448881	30449414	0	1	533	0
chr17	30582656	30585235	CD4_Plagnol_resting.42655	0	.	30582656	30585235	0	1	2579	0
chr17	30583011	30594021	Rinn_00025612	0	-	30583011	30594021	0	3	763,412,873	0,9618,10137
chr17	30583590	30593760	brain_AmbionMAQC.30068	0	-	30583590	30593760	0	2	184,1130	0,9040
chr17	30584344	30584967	prostate_carcinoma.67445	0	.	30584344	30584967	0	1	623	0
chr17	30584905	30593944	CD4_Plagnol_activated.43759	0	-	30584905	30593944	0	2	164,2306	0,6733
chr17	30591135	30591749	T47D_Burge_Thompson.19743	0	.	30591135	30591749	0	1	614	0
chr17	30591241	30591920	prostate_normal.39688	0	.	30591241	30591920	0	1	679	0
chr17	30591330	30592109	REMC_MyoepithelialBreast.63424	0	.	30591330	30592109	0	1	779	0
chr17	30591593	30594037	BT474_Burge_Thompson.22456	0	-	30591593	30594037	0	2	486,530	0,1914
chr17	30592202	30593135	MCF7_Burge_Thompson.21008	0	.	30592202	30593135	0	1	933	0
chr17	30592613	30594014	Rinn_00025613	0	-	30592613	30594014	0	2	489,258	0,1143
chr17	30592758	30593080	A549_Myers.56796	0	.	30592758	30593080	0	1	322	0
chr17	30664590	30676557	H1_polyA+.79316	0	+	30664590	30676557	0	4	248,145,196,772	0,8276,9689,11195
chr17	30664609	30676455	B_Cells_Pritchard.2227273	0	+	30664609	30676455	0	3	229,191,670	0,9670,11176
chr17	30664623	30664952	CD4_Snyder.50879	0	.	30664623	30664952	0	1	329	0
chr17	30664629	30676546	Rinn_00025355	0	+	30664629	30676546	0	3	209,122,762	0,9649,11155
chr17	30664659	30676552	Rinn_00025356	0	+	30664659	30676552	0	3	179,197,768	0,9619,11125
chr17	30664659	30676552	Rinn_00025358	0	+	30664659	30676552	0	4	117,132,197,768	0,8206,9619,11125
chr17	30664660	30676071	Rinn_00025359	0	+	30664660	30676071	0	3	116,122,287	0,9618,11124
chr17	30664664	30676557	Rinn_00025361	0	+	30664664	30676557	0	3	112,197,773	0,9614,11120
chr17	30664664	30676538	Rinn_00025360	0	+	30664664	30676538	0	4	174,130,197,754	0,8203,9614,11120
chr17	30664961	30665283	A549_Myers.56807	0	.	30664961	30665283	0	1	322	0
chr17	30667518	30676557	Rinn_00025897	0	+	30667518	30676557	0	3	23,197,773	0,6760,8266
chr17	30672928	30676546	Rinn_00025362	0	+	30672928	30676546	0	3	69,122,762	0,1350,2856
chr17	30675781	30676503	B_cells_Cheung.132449	0	.	30675781	30676503	0	1	722	0
chr17	30680776	30681749	REMC_BreastStem.34686	0	.	30680776	30681749	0	1	973	0
chr17	30681836	30682731	REMC_BreastStem.34687	0	.	30681836	30682731	0	1	895	0
chr17	30918912	30920921	REMC_MyoepithelialBreast.63446	0	.	30918912	30920921	0	1	2009	0
chr17	31202362	31202945	MIP101.46732	0	.	31202362	31202945	0	1	583	0
chr17	31202381	31202921	CD4_Plagnol_activated.44163	0	.	31202381	31202921	0	1	540	0
chr17	31202467	31202927	BT474_Burge_Thompson.22591	0	.	31202467	31202927	0	1	460	0
chr17	31889537	31889908	A549_Myers.56910	0	.	31889537	31889908	0	1	371	0
chr17	31889656	31895657	pHIT000029014	0	+	31889656	31895657	0	4	6,203,92,77	0,2072,3427,5924
chr17	31913876	31914193	B_cells_Cheung.133860	0	.	31913876	31914193	0	1	317	0
chr17	32041564	32045965	H1_polyA+.79566	0	.	32041564	32045965	0	1	4401	0
chr17	32041634	32044491	MIP101.47008	0	.	32041634	32044491	0	1	2857	0
chr17	32041685	32044804	B_Cells_Pritchard.2229405	0	-	32041685	32044804	0	1	3119	0
chr17	32042133	32045300	B_cells_Cheung.132978	0	.	32042133	32045300	0	1	3167	0
chr17	32042664	32044860	prostate_carcinoma.67895	0	.	32042664	32044860	0	1	2196	0
chr17	32046501	32048126	B_cells_Cheung.132980	0	.	32046501	32048126	0	1	1625	0
chr17	32046525	32048014	H1_polyA+.79567	0	.	32046525	32048014	0	1	1489	0
chr17	32047278	32047936	B_Cells_Pritchard.2229423	0	-	32047278	32047936	0	1	658	0
chr17	32047388	32047923	prostate_carcinoma.67898	0	.	32047388	32047923	0	1	535	0
chr17	32047419	32047929	melanoma_Garraway_short_term_cultures.46409	0	.	32047419	32047929	0	1	510	0
chr17	32048173	32050005	H1_polyA+.79568	0	.	32048173	32050005	0	1	1832	0
chr17	32048226	32049952	prostate_carcinoma.67899	0	.	32048226	32049952	0	1	1726	0
chr17	32048227	32050018	B_cells_Cheung.132981	0	.	32048227	32050018	0	1	1791	0
chr17	32048235	32049470	B_Cells_Pritchard.2229429	0	+	32048235	32049470	0	3	315,283,506	0,373,729
chr17	32048247	32049659	MIP101.47012	0	.	32048247	32049659	0	1	1412	0
chr17	32050236	32052876	H1_polyA+.79569	0	.	32050236	32052876	0	1	2640	0
chr17	32050346	32052838	prostate_carcinoma.67900	0	.	32050346	32052838	0	1	2492	0
chr17	32050863	32052859	B_cells_Cheung.132983	0	.	32050863	32052859	0	1	1996	0
chr17	32051968	32052778	HepG2_Caltech_ENCODE.25349	0	.	32051968	32052778	0	1	810	0
chr17	32053025	32058736	H1_polyA+.79570	0	.	32053025	32058736	0	1	5711	0
chr17	32053123	32055439	prostate_carcinoma.67901	0	.	32053123	32055439	0	1	2316	0
chr17	32053131	32055976	MIP101.47010	0	.	32053131	32055976	0	1	2845	0
chr17	32053160	32065398	B_Cells_Pritchard.2229439	0	+	32053160	32065398	0	2	3988,2729	0,9509
chr17	32053160	32065398	B_Cells_Pritchard.2229441	0	-	32053160	32065398	0	3	2758,414,2614	0,3401,9624
chr17	32053849	32056139	B_cells_Cheung.132985	0	.	32053849	32056139	0	1	2290	0
chr17	32055009	32056195	REMC_LuminalBreast.68337	0	.	32055009	32056195	0	1	1186	0
chr17	32056226	32058178	B_cells_Cheung.132986	0	.	32056226	32058178	0	1	1952	0
chr17	32056297	32056966	H9_polyA+.30569	0	.	32056297	32056966	0	1	669	0
chr17	32056314	32056700	MeWo_Garraway.24452	0	.	32056314	32056700	0	1	386	0
chr17	32056325	32056964	prostate_carcinoma.67905	0	.	32056325	32056964	0	1	639	0
chr17	32056327	32056942	MIP101.47015	0	.	32056327	32056942	0	1	615	0
chr17	32056395	32058347	A549_Myers.56923	0	+	32056395	32058347	0	2	587,56	0,1896
chr17	32057196	32058302	MIP101.47016	0	.	32057196	32058302	0	1	1106	0
chr17	32057200	32058219	B_Cells_Pritchard.2229443	0	+	32057200	32058219	0	2	498,521	0,498
chr17	32057217	32058347	prostate_carcinoma.67902	0	.	32057217	32058347	0	1	1130	0
chr17	32057249	32058179	BT474_Burge_Thompson.22528	0	.	32057249	32058179	0	1	930	0
chr17	32057314	32057929	H9_polyA+.30570	0	.	32057314	32057929	0	1	615	0
chr17	32058736	32065379	H1_polyA+.79571	0	.	32058736	32065379	0	1	6643	0
chr17	32059595	32065542	MIP101.47014	0	.	32059595	32065542	0	1	5947	0
chr17	32059656	32060599	B_cells_Cheung.132988	0	.	32059656	32060599	0	1	943	0
chr17	32060076	32060684	BT474_Burge_Thompson.22529	0	.	32060076	32060684	0	1	608	0
chr17	32060619	32065399	prostate_carcinoma.67907	0	+	32060619	32065399	0	2	741,1188	0,3592
chr17	32060708	32061580	B_cells_Cheung.132989	0	.	32060708	32061580	0	1	872	0
chr17	32061365	32063567	prostate_carcinoma.67908	0	.	32061365	32063567	0	1	2202	0
chr17	32061625	32062324	H9_polyA+.30572	0	.	32061625	32062324	0	1	699	0
chr17	32061653	32065294	B_cells_Cheung.132990	0	+	32061653	32065294	0	3	562,782,986	0,1557,2655
chr17	32061653	32065294	B_cells_Cheung.132991	0	.	32061653	32065294	0	1	3641	0
chr17	32062842	32064518	prostate_normal.39796	0	.	32062842	32064518	0	1	1676	0
chr17	32063242	32064424	BT474_Burge_Thompson.22526	0	.	32063242	32064424	0	1	1182	0
chr17	32063857	32064442	brain_AmbionMAQC.30107	0	.	32063857	32064442	0	1	585	0
chr17	32063982	32064398	A549_Myers.56928	0	.	32063982	32064398	0	1	416	0
chr17	32063990	32065068	REMC_MyoepithelialBreast.63523	0	.	32063990	32065068	0	1	1078	0
chr17	32064622	32065155	A549_Myers.56929	0	.	32064622	32065155	0	1	533	0
chr17	32064639	32065236	H9_polyA+.30574	0	.	32064639	32065236	0	1	597	0
chr17	32071344	32072122	H1_polyA+.79437	0	.	32071344	32072122	0	1	778	0
chr17	32072341	32072909	A549_Myers.56930	0	.	32072341	32072909	0	1	568	0
chr17	32084352	32085438	H1_polyA+.79440	0	.	32084352	32085438	0	1	1086	0
chr17	32084571	32085121	A549_Myers.56932	0	.	32084571	32085121	0	1	550	0
chr17	32087628	32088153	H1_polyA+.79441	0	.	32087628	32088153	0	1	525	0
chr17	32091899	32092968	H1_polyA+.79444	0	.	32091899	32092968	0	1	1069	0
chr17	32092151	32092749	A549_Myers.56933	0	-	32092151	32092749	0	2	152,274	0,324
chr17	32093078	32093968	H1_polyA+.79445	0	.	32093078	32093968	0	1	890	0
chr17	32094081	32094939	H1_polyA+.79446	0	.	32094081	32094939	0	1	858	0
chr17	32094143	32094595	H9_polyA+.30575	0	.	32094143	32094595	0	1	452	0
chr17	32094298	32094928	B_Cells_Pritchard.2229609	0	.	32094298	32094928	0	1	630	0
chr17	32100371	32100821	H1_polyA+.79450	0	.	32100371	32100821	0	1	450	0
chr17	32101369	32103970	H1_polyA+.79451	0	.	32101369	32103970	0	1	2601	0
chr17	32102303	32102877	A549_Myers.56936	0	.	32102303	32102877	0	1	574	0
chr17	32104260	32104610	B_Cells_Pritchard.2229651	0	.	32104260	32104610	0	1	350	0
chr17	32104264	32105181	H1_polyA+.79452	0	.	32104264	32105181	0	1	917	0
chr17	32105309	32108141	H1_polyA+.79453	0	.	32105309	32108141	0	1	2832	0
chr17	32109424	32110344	H1_polyA+.79454	0	.	32109424	32110344	0	1	920	0
chr17	32112672	32113303	H1_polyA+.79455	0	.	32112672	32113303	0	1	631	0
chr17	32114753	32118330	H1_polyA+.79456	0	.	32114753	32118330	0	1	3577	0
chr17	32119217	32124616	H1_polyA+.79457	0	.	32119217	32124616	0	1	5399	0
chr17	32134052	32134757	A549_Myers.56940	0	.	32134052	32134757	0	1	705	0
chr17	32136047	32137187	H1_polyA+.79461	0	.	32136047	32137187	0	1	1140	0
chr17	32151697	32153511	H1_polyA+.79470	0	.	32151697	32153511	0	1	1814	0
chr17	32152424	32153555	B_Cells_Pritchard.2229855	0	.	32152424	32153555	0	1	1131	0
chr17	32152894	32154764	Rinn_00025370	0	+	32152894	32154764	0	2	338,51	0,1819
chr17	32152924	32153245	testes_Burge.36162	0	.	32152924	32153245	0	1	321	0
chr17	32153742	32154360	B_Cells_Pritchard.2229857	0	.	32153742	32154360	0	1	618	0
chr17	32153953	32155810	H1_polyA+.79471	0	.	32153953	32155810	0	1	1857	0
chr17	32154308	32155397	K562.30619	0	.	32154308	32155397	0	1	1089	0
chr17	32156106	32158078	H1_polyA+.79472	0	.	32156106	32158078	0	1	1972	0
chr17	32156499	32157849	MIP101.46742	0	.	32156499	32157849	0	1	1350	0
chr17	32158202	32158659	B_cells_Cheung.132996	0	.	32158202	32158659	0	1	457	0
chr17	32158826	32160852	H1_polyA+.79473	0	.	32158826	32160852	0	1	2026	0
chr17	32161017	32178078	H1_polyA+.79474	0	+	32161017	32178078	0	3	2847,207,4557	0,4363,12504
chr17	32170964	32172761	prostate_carcinoma.67639	0	.	32170964	32172761	0	1	1797	0
chr17	32171618	32172103	B_Cells_Pritchard.2229935	0	.	32171618	32172103	0	1	485	0
chr17	32171746	32172664	BT474_Burge_Thompson.22507	0	.	32171746	32172664	0	1	918	0
chr17	32172280	32172607	B_Cells_Pritchard.2229937	0	.	32172280	32172607	0	1	327	0
chr17	32173281	32174090	B_Cells_Pritchard.2229941	0	.	32173281	32174090	0	1	809	0
chr17	32173297	32179764	prostate_carcinoma.67638	0	+	32173297	32179764	0	2	38,1559	0,4908
chr17	32173620	32174283	MIP101.46743	0	.	32173620	32174283	0	1	663	0
chr17	32174965	32178044	prostate_carcinoma.67637	0	.	32174965	32178044	0	1	3079	0
chr17	32175420	32176520	B_Cells_Pritchard.2229951	0	.	32175420	32176520	0	1	1100	0
chr17	32176555	32177844	melanoma_Garraway_short_term_cultures.46414	0	.	32176555	32177844	0	1	1289	0
chr17	32176711	32177465	brain_AmbionMAQC.30109	0	.	32176711	32177465	0	1	754	0
chr17	32176901	32178038	B_Cells_Pritchard.2229955	0	.	32176901	32178038	0	1	1137	0
chr17	32176931	32177393	HepG2_Caltech_ENCODE.25294	0	.	32176931	32177393	0	1	462	0
chr17	32176932	32178041	prostate_normal.39798	0	.	32176932	32178041	0	1	1109	0
chr17	32177362	32178070	MIP101.46745	0	.	32177362	32178070	0	1	708	0
chr17	32177498	32178027	B_cells_Cheung.133001	0	.	32177498	32178027	0	1	529	0
chr17	32177546	32178051	brain_AmbionMAQC.30110	0	.	32177546	32178051	0	1	505	0
chr17	32178194	32180252	H1_polyA+.79475	0	.	32178194	32180252	0	1	2058	0
chr17	32181032	32182002	H1_polyA+.79476	0	.	32181032	32182002	0	1	970	0
chr17	32182316	32184065	H1_polyA+.79477	0	.	32182316	32184065	0	1	1749	0
chr17	32189071	32190470	H1_polyA+.79478	0	.	32189071	32190470	0	1	1399	0
chr17	32191242	32192397	prostate_carcinoma.67640	0	-	32191242	32192397	0	2	1009,27	0,1128
chr17	32191242	32192385	prostate_carcinoma.67641	0	.	32191242	32192385	0	1	1143	0
chr17	32191271	32192431	H1_polyA+.79479	0	.	32191271	32192431	0	1	1160	0
chr17	32191507	32192022	brain_AmbionMAQC.30120	0	.	32191507	32192022	0	1	515	0
chr17	32192067	32192426	prostate_normal.39800	0	.	32192067	32192426	0	1	359	0
chr17	32192546	32192958	prostate_carcinoma.67642	0	.	32192546	32192958	0	1	412	0
chr17	32192567	32193258	brain_AmbionMAQC.30122	0	.	32192567	32193258	0	1	691	0
chr17	32199776	32201272	H1_polyA+.79481	0	.	32199776	32201272	0	1	1496	0
chr17	32202647	32203364	H1_polyA+.79482	0	.	32202647	32203364	0	1	717	0
chr17	32202740	32203360	prostate_carcinoma.67643	0	.	32202740	32203360	0	1	620	0
chr17	32222470	32222832	A549_Myers.56948	0	.	32222470	32222832	0	1	362	0
chr17	32239318	32240538	H1_polyA+.79485	0	.	32239318	32240538	0	1	1220	0
chr17	32239914	32240227	A549_Myers.56950	0	.	32239914	32240227	0	1	313	0
chr17	32241764	32242562	H1_polyA+.79487	0	.	32241764	32242562	0	1	798	0
chr17	32248396	32248756	A549_Myers.56952	0	.	32248396	32248756	0	1	360	0
chr17	32255150	32255749	A549_Myers.56955	0	.	32255150	32255749	0	1	599	0
chr17	32266287	32267036	B_Cells_Pritchard.2230279	0	.	32266287	32267036	0	1	749	0
chr17	32291767	32292135	A549_Myers.56959	0	.	32291767	32292135	0	1	368	0
chr17	32292728	32293075	A549_Myers.56960	0	.	32292728	32293075	0	1	347	0
chr17	32295929	32296324	B_Cells_Pritchard.2230389	0	.	32295929	32296324	0	1	395	0
chr17	32309231	32309873	B_Cells_Pritchard.2230431	0	.	32309231	32309873	0	1	642	0
chr17	32310336	32311168	BT474_Burge_Thompson.22508	0	.	32310336	32311168	0	1	832	0
chr17	32321702	32322386	brain_AmbionMAQC.30123	0	.	32321702	32322386	0	1	684	0
chr17	32349832	32350236	A549_Myers.56965	0	.	32349832	32350236	0	1	404	0
chr17	32351443	32351948	A549_Myers.56966	0	.	32351443	32351948	0	1	505	0
chr17	32356765	32357153	brain_AmbionMAQC.30172	0	.	32356765	32357153	0	1	388	0
chr17	32358188	32361974	BT20_Thompson.14776	0	.	32358188	32361974	0	1	3786	0
chr17	32358796	32365097	brain_AmbionMAQC.30169	0	.	32358796	32365097	0	1	6301	0
chr17	32359351	32360343	MCF7_Burge_Thompson.21056	0	.	32359351	32360343	0	1	992	0
chr17	32362087	32364941	BT20_Thompson.14777	0	.	32362087	32364941	0	1	2854	0
chr17	32362516	32362889	A549_Myers.56967	0	.	32362516	32362889	0	1	373	0
chr17	32363118	32364892	MCF7_Burge_Thompson.21055	0	.	32363118	32364892	0	1	1774	0
chr17	32363227	32364950	A549_Myers.56968	0	.	32363227	32364950	0	1	1723	0
chr17	32363565	32363873	T47D_Burge_Thompson.19806	0	.	32363565	32363873	0	1	308	0
chr17	32363566	32363985	B_cells_Cheung.133005	0	.	32363566	32363985	0	1	419	0
chr17	32363600	32364551	BT474_Burge_Thompson.22509	0	.	32363600	32364551	0	1	951	0
chr17	32363627	32363976	kidney_Raymond.70429	0	.	32363627	32363976	0	1	349	0
chr17	32363716	32364473	ZR751_Thompson.16527	0	.	32363716	32364473	0	1	757	0
chr17	32365531	32367077	A549_Myers.56971	0	.	32365531	32367077	0	1	1546	0
chr17	32377642	32377963	A549_Myers.56977	0	.	32377642	32377963	0	1	321	0
chr17	32492309	32494155	REMC_MyoepithelialBreast.63526	0	.	32492309	32494155	0	1	1846	0
chr17	32492935	32497493	REMC_LuminalBreast.68342	0	.	32492935	32497493	0	1	4558	0
chr17	32497606	32498577	H1_polyA+.79921	0	.	32497606	32498577	0	1	971	0
chr17	32497608	32501246	REMC_LuminalBreast.68343	0	.	32497608	32501246	0	1	3638	0
chr17	32497725	32502033	REMC_MyoepithelialBreast.63529	0	.	32497725	32502033	0	1	4308	0
chr17	32497810	32498138	BT474_Burge_Thompson.22512	0	.	32497810	32498138	0	1	328	0
chr17	32502163	32511122	REMC_LuminalBreast.68344	0	.	32502163	32511122	0	1	8959	0
chr17	32503600	32514959	B_Cells_Pritchard.2231003	0	-	32503600	32514959	0	2	134,2871	0,8488
chr17	32503808	32504422	REMC_MyoepithelialBreast.63532	0	.	32503808	32504422	0	1	614	0
chr17	32505866	32507251	REMC_BreastStem.34765	0	.	32505866	32507251	0	1	1385	0
chr17	32511860	32514124	REMC_MyoepithelialBreast.63539	0	.	32511860	32514124	0	1	2264	0
chr17	33104646	33105168	B_Cells_Pritchard.2232055	0	.	33104646	33105168	0	1	522	0
chr17	33193049	33193497	B_cells_Cheung.133300	0	.	33193049	33193497	0	1	448	0
chr17	33228233	33228788	A549_Myers.57113	0	.	33228233	33228788	0	1	555	0
chr17	33230007	33230495	A549_Myers.57114	0	.	33230007	33230495	0	1	488	0
chr17	33257175	33260909	MIP101.46926	0	.	33257175	33260909	0	1	3734	0
chr17	33257443	33259893	B_Cells_Pritchard.2232491	0	.	33257443	33259893	0	1	2450	0
chr17	33258557	33258921	B_cells_Cheung.133303	0	.	33258557	33258921	0	1	364	0
chr17	33264733	33266069	MIP101.46928	0	.	33264733	33266069	0	1	1336	0
chr17	33264747	33265384	B_Cells_Pritchard.2232505	0	.	33264747	33265384	0	1	637	0
chr17	33269335	33270750	B_Cells_Pritchard.2232515	0	.	33269335	33270750	0	1	1415	0
chr17	33269771	33270420	B_cells_Cheung.133309	0	.	33269771	33270420	0	1	649	0
chr17	33269843	33270390	BT474_Burge_Thompson.22544	0	.	33269843	33270390	0	1	547	0
chr17	33269950	33270301	T47D_Burge_Thompson.19843	0	.	33269950	33270301	0	1	351	0
chr17	33269998	33270918	MIP101.46931	0	.	33269998	33270918	0	1	920	0
chr17	33271679	33273873	B_cells_Cheung.133311	0	.	33271679	33273873	0	1	2194	0
chr17	33271758	33274710	B_Cells_Pritchard.2232527	0	-	33271758	33274710	0	2	1940,639	0,2313
chr17	33271758	33273698	B_Cells_Pritchard.2232525	0	+	33271758	33273698	0	1	1940	0
chr17	33272248	33273674	T47D_Burge_Thompson.19844	0	.	33272248	33273674	0	1	1426	0
chr17	33272675	33273613	MIP101.46935	0	.	33272675	33273613	0	1	938	0
chr17	33274115	33274664	MIP101.46936	0	.	33274115	33274664	0	1	549	0
chr17	33758400	33760190	prostate_carcinoma.67797	0	.	33758400	33760190	0	1	1790	0
chr17	33824468	33825594	BT474_Burge_Thompson.22598	0	.	33824468	33825594	0	1	1126	0
chr17	33829383	33829947	H1_polyA+.79633	0	.	33829383	33829947	0	1	564	0
chr17	33830746	33831616	H1_polyA+.79634	0	.	33830746	33831616	0	1	870	0
chr17	33831788	33833212	H1_polyA+.79635	0	.	33831788	33833212	0	1	1424	0
chr17	33833971	33834316	A549_Myers.57135	0	.	33833971	33834316	0	1	345	0
chr17	33929420	33929913	REMC_MyoepithelialBreast.63618	0	.	33929420	33929913	0	1	493	0
chr17	33934125	33934741	REMC_MyoepithelialBreast.63621	0	.	33934125	33934741	0	1	616	0
chr17	33937730	33938274	BT474_Burge_Thompson.22762	0	.	33937730	33938274	0	1	544	0
chr17	34017009	34017455	A549_Myers.57210	0	.	34017009	34017455	0	1	446	0
chr17	34021247	34021710	BT474_Burge_Thompson.22614	0	.	34021247	34021710	0	1	463	0
chr17	34023659	34024397	BT474_Burge_Thompson.22616	0	.	34023659	34024397	0	1	738	0
chr17	34024040	34024823	HepG2_Caltech_ENCODE.25369	0	.	34024040	34024823	0	1	783	0
chr17	34030106	34030661	HepG2_Caltech_ENCODE.25370	0	.	34030106	34030661	0	1	555	0
chr17	34030359	34030953	BT474_Burge_Thompson.22619	0	.	34030359	34030953	0	1	594	0
chr17	34064529	34065770	B_cells_Cheung.133459	0	.	34064529	34065770	0	1	1241	0
chr17	34065190	34066253	HepG2_Caltech_ENCODE.25371	0	.	34065190	34066253	0	1	1063	0
chr17	34065280	34065870	BT474_Burge_Thompson.22629	0	.	34065280	34065870	0	1	590	0
chr17	34066730	34073567	B_cells_Cheung.133460	0	+	34066730	34073567	0	2	252,590	0,6247
chr17	34066765	34068256	BT474_Burge_Thompson.22630	0	.	34066765	34068256	0	1	1491	0
chr17	34067488	34067960	HepG2_Caltech_ENCODE.25373	0	.	34067488	34067960	0	1	472	0
chr17	34068312	34069246	BT474_Burge_Thompson.22631	0	.	34068312	34069246	0	1	934	0
chr17	34068639	34069139	B_Cells_Pritchard.2233655	0	+	34068639	34069139	0	1	500	0
chr17	34069979	34070363	B_cells_Cheung.133462	0	.	34069979	34070363	0	1	384	0
chr17	34071911	34072302	BT474_Burge_Thompson.22632	0	.	34071911	34072302	0	1	391	0
chr17	34071952	34072469	B_cells_Cheung.133464	0	.	34071952	34072469	0	1	517	0
chr17	34073627	34074555	BT474_Burge_Thompson.22634	0	.	34073627	34074555	0	1	928	0
chr17	34073646	34074163	A549_Myers.57213	0	.	34073646	34074163	0	1	517	0
chr17	34073697	34074026	B_cells_Cheung.133465	0	.	34073697	34074026	0	1	329	0
chr17	34091742	34101837	B_Cells_Pritchard.2233901	0	+	34091742	34101837	0	5	127,443,1256,211,1775	0,2578,3183,4792,8320
chr17	34093469	34094172	B_cells_Cheung.134404	0	.	34093469	34094172	0	1	703	0
chr17	34094805	34096106	BT474_Burge_Thompson.59329	0	.	34094805	34096106	0	1	1301	0
chr17	34098164	34098600	B_cells_Cheung.134407	0	.	34098164	34098600	0	1	436	0
chr17	34099911	34101322	B_cells_Cheung.134409	0	.	34099911	34101322	0	1	1411	0
chr17	34100622	34101553	prostate_carcinoma.68183	0	.	34100622	34101553	0	1	931	0
chr17	34102960	34104391	B_cells_Cheung.134411	0	.	34102960	34104391	0	1	1431	0
chr17	34103019	34103738	melanoma_Garraway_short_term_cultures.46523	0	.	34103019	34103738	0	1	719	0
chr17	34103444	34104413	prostate_carcinoma.68184	0	.	34103444	34104413	0	1	969	0
chr17	34103548	34104132	BT474_Burge_Thompson.59331	0	.	34103548	34104132	0	1	584	0
chr17	34103723	34104193	REMC_LuminalBreast.68495	0	.	34103723	34104193	0	1	470	0
chr17	34112200	34114038	CD4_Plagnol_resting.42902	0	.	34112200	34114038	0	1	1838	0
chr17	34112222	34113980	HeLa_polyA+_Chen.24798	0	.	34112222	34113980	0	1	1758	0
chr17	34112222	34112593	MB435_Burge.29234	0	.	34112222	34112593	0	1	371	0
chr17	34112229	34113778	MeWo_Garraway.24511	0	.	34112229	34113778	0	1	1549	0
chr17	34112229	34114523	HIT000017742	0	-	34112229	34114523	0	1	2294	0
chr17	34112241	34112675	skeletal_muscle_Burge.20269	0	.	34112241	34112675	0	1	434	0
chr17	34112259	34113506	H1_polyA+.79772	0	.	34112259	34113506	0	1	1247	0
chr17	34112260	34112716	CD4_Snyder.51138	0	.	34112260	34112716	0	1	456	0
chr17	34112264	34113149	liver_polyA+.92814	0	.	34112264	34113149	0	1	885	0
chr17	34112267	34113527	MCF7_Burge_Thompson.21121	0	.	34112267	34113527	0	1	1260	0
chr17	34112274	34113897	MDAMB231_Thompson.15219	0	.	34112274	34113897	0	1	1623	0
chr17	34112287	34113242	brain_AmbionMAQC.30252	0	.	34112287	34113242	0	1	955	0
chr17	34112287	34112912	lymph_node_Burge.34097	0	.	34112287	34112912	0	1	625	0
chr17	34112412	34113327	melanoma_Garraway_short_term_cultures.46524	0	.	34112412	34113327	0	1	915	0
chr17	34112499	34112984	HeLa_polyA-_Chen.13486	0	.	34112499	34112984	0	1	485	0
chr17	34159997	34161404	REMC_LuminalBreast.68505	0	.	34159997	34161404	0	1	1407	0
chr17	34160070	34161386	melanoma_Garraway_short_term_cultures.46534	0	.	34160070	34161386	0	1	1316	0
chr17	34160351	34161098	MCF7_Burge_Thompson.21101	0	.	34160351	34161098	0	1	747	0
chr17	34160463	34161520	BT20_Thompson.14823	0	.	34160463	34161520	0	1	1057	0
chr17	34253764	34255504	REMC_LuminalBreast.68523	0	.	34253764	34255504	0	1	1740	0
chr17	34253809	34254928	B_cells_Cheung.133511	0	.	34253809	34254928	0	1	1119	0
chr17	34253962	34254912	REMC_MyoepithelialBreast.63757	0	.	34253962	34254912	0	1	950	0
chr17	34255057	34256808	REMC_MyoepithelialBreast.63758	0	.	34255057	34256808	0	1	1751	0
chr17	34255224	34256797	REMC_BreastStem.34910	0	.	34255224	34256797	0	1	1573	0
chr17	34332655	34333242	prostate_normal.39932	0	.	34332655	34333242	0	1	587	0
chr17	34333450	34334062	REMC_MyoepithelialBreast.63767	0	.	34333450	34334062	0	1	612	0
chr17	34333464	34334022	B_cells_Cheung.133526	0	.	34333464	34334022	0	1	558	0
chr17	34333489	34333959	BT20_Thompson.14881	0	.	34333489	34333959	0	1	470	0
chr17	34333492	34334020	CD4_Plagnol_resting.43188	0	.	34333492	34334020	0	1	528	0
chr17	34333492	34333977	CD4_Plagnol_activated.44108	0	.	34333492	34333977	0	1	485	0
chr17	34333507	34334047	REMC_LuminalBreast.68539	0	.	34333507	34334047	0	1	540	0
chr17	34405583	34406969	BT474_Burge_Thompson.22649	0	.	34405583	34406969	0	1	1386	0
chr17	34410976	34412498	BT474_Burge_Thompson.22651	0	.	34410976	34412498	0	1	1522	0
chr17	34412608	34413373	BT474_Burge_Thompson.22652	0	.	34412608	34413373	0	1	765	0
chr17	34418568	34419829	BT474_Burge_Thompson.22657	0	.	34418568	34419829	0	1	1261	0
chr17	34437946	34440168	H1_polyA+.79746	0	.	34437946	34440168	0	1	2222	0
chr17	34455676	34456419	BT474_Burge_Thompson.22664	0	.	34455676	34456419	0	1	743	0
chr17	34457351	34458616	H1_polyA+.79750	0	.	34457351	34458616	0	1	1265	0
chr17	34458721	34459437	H1_polyA+.79751	0	.	34458721	34459437	0	1	716	0
chr17	34462364	34462991	H1_polyA+.79748	0	.	34462364	34462991	0	1	627	0
chr17	34563655	34564291	BT474_Burge_Thompson.22708	0	.	34563655	34564291	0	1	636	0
chr17	34563877	34564356	A549_Myers.57245	0	.	34563877	34564356	0	1	479	0
chr17	34616122	34616529	B_cells_Cheung.133621	0	.	34616122	34616529	0	1	407	0
chr17	34640665	34642507	BT474_Burge_Thompson.23664	0	.	34640665	34642507	0	1	1842	0
chr17	34641704	34642105	A549_Myers.57263	0	.	34641704	34642105	0	1	401	0
chr17	34645335	34646552	BT474_Burge_Thompson.23667	0	.	34645335	34646552	0	1	1217	0
chr17	34655948	34656853	B_cells_Cheung.133625	0	.	34655948	34656853	0	1	905	0
chr17	34655969	34656857	H1_polyA+.79778	0	.	34655969	34656857	0	1	888	0
chr17	34656032	34656706	CD4_Plagnol_activated.44111	0	.	34656032	34656706	0	1	674	0
chr17	34658575	34659142	B_Cells_Pritchard.2235283	0	-	34658575	34659142	0	1	567	0
chr17	34866355	34866677	B_cells_Cheung.133642	0	.	34866355	34866677	0	1	322	0
chr17	34958411	34960543	ZR751_Thompson.16585	0	.	34958411	34960543	0	1	2132	0
chr17	34959848	34960512	T47D_Burge_Thompson.19904	0	.	34959848	34960512	0	1	664	0
chr17	34960240	34960541	REMC_LuminalBreast.68636	0	.	34960240	34960541	0	1	301	0
chr17	34960842	34977324	Rinn_00025376	0	+	34960842	34977324	0	3	79,129,2787	0,5221,13695
chr17	34963237	34965570	liver_polyA+.92959	0	-	34963237	34965570	0	2	1178,43	0,2290
chr17	34963326	34963887	REMC_BreastStem.34994	0	.	34963326	34963887	0	1	561	0
chr17	34963377	34964369	MIP101.47075	0	.	34963377	34964369	0	1	992	0
chr17	34963421	34964432	CD4_Plagnol_resting.43104	0	.	34963421	34964432	0	1	1011	0
chr17	34963509	34964449	H1_polyA+.79899	0	.	34963509	34964449	0	1	940	0
chr17	34963534	34964362	MCF7_Burge_Thompson.21156	0	.	34963534	34964362	0	1	828	0
chr17	34963767	34964867	CD4_Plagnol_activated.44182	0	.	34963767	34964867	0	1	1100	0
chr17	34965055	34971697	B_Cells_Pritchard.2235857	0	-	34965055	34971697	0	3	3451,1749,1029	0,3728,5613
chr17	34965804	34968393	CD4_Plagnol_resting.43105	0	.	34965804	34968393	0	1	2589	0
chr17	34965813	34968297	liver_polyA+.92957	0	-	34965813	34968297	0	2	652,1683	0,801
chr17	34965824	34967649	CD4_Plagnol_activated.44184	0	.	34965824	34967649	0	1	1825	0
chr17	34965843	34966433	melanoma_Garraway_short_term_cultures.46618	0	.	34965843	34966433	0	1	590	0
chr17	34971981	34984348	B_Cells_Pritchard.2235859	0	+	34971981	34984348	0	4	2944,141,6639,84	0,3217,3637,12283
chr17	34971981	34995191	B_Cells_Pritchard.2235861	0	-	34971981	34995191	0	4	3092,142,8757,94	0,3199,3476,23116
chr17	34972542	34982141	khalil_888	0	.	34972542	34982141	0	8	1469,1163,239,199,291,217,313,398	0,1892,3540,3898,5842,6154,7404,9201
chr17	34972761	34973128	CD4_Plagnol_activated.44188	0	.	34972761	34973128	0	1	367	0
chr17	34972761	34973232	HeLa_polyA+_Chen.24867	0	.	34972761	34973232	0	1	471	0
chr17	34973297	34974389	CD4_Plagnol_resting.43108	0	.	34973297	34974389	0	1	1092	0
chr17	34973301	34974535	REMC_LuminalBreast.68645	0	.	34973301	34974535	0	1	1234	0
chr17	34973364	34974369	HeLa_polyA+_Chen.24868	0	.	34973364	34974369	0	1	1005	0
chr17	34973425	34973944	A549_Myers.57308	0	.	34973425	34973944	0	1	519	0
chr17	34973508	34974279	melanoma_Garraway_short_term_cultures.46625	0	.	34973508	34974279	0	1	771	0
chr17	34974483	34982845	melanoma_Garraway_short_term_cultures.46626	0	+	34974483	34982845	0	2	160,6279	0,2083
chr17	34975140	34976529	REMC_LuminalBreast.68647	0	.	34975140	34976529	0	1	1389	0
chr17	34975477	34977470	brain_AmbionMAQC.30278	0	.	34975477	34977470	0	1	1993	0
chr17	34975488	34977395	CD4_Plagnol_resting.43109	0	.	34975488	34977395	0	1	1907	0
chr17	34975493	34977332	liver_polyA+.92954	0	.	34975493	34977332	0	1	1839	0
chr17	34975513	34982845	melanoma_Garraway_short_term_cultures.46627	0	.	34975513	34982845	0	1	7332	0
chr17	34975536	34977306	CD4_Plagnol_activated.44190	0	.	34975536	34977306	0	1	1770	0
chr17	34975820	34977330	MCF10A_Thompson.14741	0	.	34975820	34977330	0	1	1510	0
chr17	34976013	34977289	A549_Myers.57301	0	.	34976013	34977289	0	1	1276	0
chr17	34976313	34977082	lymph_node_Burge.34164	0	.	34976313	34977082	0	1	769	0
chr17	34976321	34977321	H9_polyA+.30710	0	.	34976321	34977321	0	1	1000	0
chr17	34976563	34977092	NEC_from_H9.51195	0	.	34976563	34977092	0	1	529	0
chr17	34976740	34977082	testes_Burge.36337	0	.	34976740	34977082	0	1	342	0
chr17	34977821	34979849	prostate_normal.39974	0	.	34977821	34979849	0	1	2028	0
chr17	34978112	34978659	brain_AmbionMAQC.30281	0	.	34978112	34978659	0	1	547	0
chr17	34978146	34982865	MIP101.47081	0	.	34978146	34982865	0	1	4719	0
chr17	34979065	34979626	A549_Myers.57313	0	.	34979065	34979626	0	1	561	0
chr17	34979980	34981244	HepG2_Caltech_ENCODE.25413	0	.	34979980	34981244	0	1	1264	0
chr17	34980635	34981218	A549_Myers.57316	0	.	34980635	34981218	0	1	583	0
chr17	34980739	34982871	HeLa_polyA+_Chen.24837	0	.	34980739	34982871	0	1	2132	0
chr17	34980743	34981582	prostate_normal.39976	0	.	34980743	34981582	0	1	839	0
chr17	34983169	34984215	prostate_normal.39978	0	.	34983169	34984215	0	1	1046	0
chr17	34983176	34984213	B_cells_Cheung.133685	0	.	34983176	34984213	0	1	1037	0
chr17	34983428	34983869	A549_Myers.57319	0	.	34983428	34983869	0	1	441	0
chr17	34983436	34984220	CD4_Plagnol_resting.43114	0	.	34983436	34984220	0	1	784	0
chr17	34983523	34984243	REMC_LuminalBreast.68648	0	.	34983523	34984243	0	1	720	0
chr17	34983554	34984212	REMC_BreastStem.34999	0	.	34983554	34984212	0	1	658	0
chr17	34983737	34984247	REMC_MyoepithelialBreast.63976	0	.	34983737	34984247	0	1	510	0
chr17	34984301	34986872	REMC_MyoepithelialBreast.63977	0	.	34984301	34986872	0	1	2571	0
chr17	34984320	34986875	REMC_BreastStem.35000	0	.	34984320	34986875	0	1	2555	0
chr17	34985502	34987159	REMC_LuminalBreast.68650	0	.	34985502	34987159	0	1	1657	0
chr17	34985895	34986534	BT474_Burge_Thompson.22734	0	.	34985895	34986534	0	1	639	0
chr17	34987450	34989565	REMC_LuminalBreast.68651	0	.	34987450	34989565	0	1	2115	0
chr17	34987468	34990636	REMC_BreastStem.35001	0	.	34987468	34990636	0	1	3168	0
chr17	34991024	34992150	BT474_Burge_Thompson.22737	0	.	34991024	34992150	0	1	1126	0
chr17	34992495	34994972	REMC_BreastStem.35003	0	.	34992495	34994972	0	1	2477	0
chr17	34993110	34994280	BT474_Burge_Thompson.22739	0	.	34993110	34994280	0	1	1170	0
chr17	34993120	34994283	REMC_LuminalBreast.68654	0	.	34993120	34994283	0	1	1163	0
chr17	34993244	34994789	B_cells_Cheung.133691	0	.	34993244	34994789	0	1	1545	0
chr17	34993263	34995148	REMC_MyoepithelialBreast.63981	0	.	34993263	34995148	0	1	1885	0
chr17	34993611	34994793	B_Cells_Pritchard.2235893	0	+	34993611	34994793	0	1	1182	0
chr17	34993643	34994805	CD4_Plagnol_resting.43116	0	.	34993643	34994805	0	1	1162	0
chr17	34995331	34999221	REMC_LuminalBreast.68656	0	.	34995331	34999221	0	1	3890	0
chr17	34995760	34999933	REMC_BreastStem.35004	0	.	34995760	34999933	0	1	4173	0
chr17	34995760	34996136	B_cells_Cheung.133692	0	.	34995760	34996136	0	1	376	0
chr17	34999652	35003298	REMC_LuminalBreast.68658	0	.	34999652	35003298	0	1	3646	0
chr17	35000198	35003394	REMC_BreastStem.35005	0	.	35000198	35003394	0	1	3196	0
chr17	35000580	35002200	REMC_MyoepithelialBreast.63983	0	.	35000580	35002200	0	1	1620	0
chr17	35001520	35002699	BT474_Burge_Thompson.22748	0	.	35001520	35002699	0	1	1179	0
chr17	35001532	35003309	B_Cells_Pritchard.2235919	0	.	35001532	35003309	0	1	1777	0
chr17	35001729	35002198	B_cells_Cheung.133697	0	.	35001729	35002198	0	1	469	0
chr17	35002961	35007372	BT474_Burge_Thompson.22742	0	-	35002961	35007372	0	2	779,1075	0,3336
chr17	35003444	35003903	B_Cells_Pritchard.2235921	0	.	35003444	35003903	0	1	459	0
chr17	35004629	35005529	BT474_Burge_Thompson.22749	0	.	35004629	35005529	0	1	900	0
chr17	35005149	35006500	REMC_LuminalBreast.68659	0	.	35005149	35006500	0	1	1351	0
chr17	35005402	35006065	B_Cells_Pritchard.2235929	0	.	35005402	35006065	0	1	663	0
chr17	35005626	35007372	BT474_Burge_Thompson.22741	0	.	35005626	35007372	0	1	1746	0
chr17	35005836	35006623	REMC_BreastStem.35006	0	.	35005836	35006623	0	1	787	0
chr17	35006183	35006590	B_Cells_Pritchard.2235931	0	.	35006183	35006590	0	1	407	0
chr17	35006604	35006925	A549_Myers.57322	0	.	35006604	35006925	0	1	321	0
chr17	35007503	35008876	REMC_MyoepithelialBreast.63984	0	.	35007503	35008876	0	1	1373	0
chr17	35008889	35009249	A549_Myers.57324	0	.	35008889	35009249	0	1	360	0
chr17	35009389	35009899	BT474_Burge_Thompson.22750	0	.	35009389	35009899	0	1	510	0
chr17	35009610	35009987	A549_Myers.57325	0	.	35009610	35009987	0	1	377	0
chr17	35010021	35010467	REMC_BreastStem.35008	0	.	35010021	35010467	0	1	446	0
chr17	35010668	35011129	B_Cells_Pritchard.2235955	0	.	35010668	35011129	0	1	461	0
chr17	35010779	35011398	A549_Myers.57326	0	.	35010779	35011398	0	1	619	0
chr17	35011142	35011760	BT474_Burge_Thompson.22751	0	.	35011142	35011760	0	1	618	0
chr17	35011336	35011944	B_cells_Cheung.133699	0	.	35011336	35011944	0	1	608	0
chr17	35022099	35022829	BT474_Burge_Thompson.22755	0	.	35022099	35022829	0	1	730	0
chr17	35024227	35024681	B_Cells_Pritchard.2236003	0	+	35024227	35024681	0	1	454	0
chr17	35025757	35026235	B_cells_Cheung.133708	0	.	35025757	35026235	0	1	478	0
chr17	35026705	35028931	B_Cells_Pritchard.2236017	0	+	35026705	35028931	0	1	2226	0
chr17	35026705	35028931	B_Cells_Pritchard.2236019	0	-	35026705	35028931	0	2	1147,320	0,1906
chr17	35027243	35028089	A549_Myers.57333	0	.	35027243	35028089	0	1	846	0
chr17	35032699	35033421	B_Cells_Pritchard.2236025	0	.	35032699	35033421	0	1	722	0
chr17	35033014	35033532	A549_Myers.57336	0	.	35033014	35033532	0	1	518	0
chr17	35033445	35034207	BT474_Burge_Thompson.22758	0	.	35033445	35034207	0	1	762	0
chr17	35034327	35035486	prostate_normal.40124	0	.	35034327	35035486	0	1	1159	0
chr17	35343498	35346752	B_cells_Cheung.133892	0	.	35343498	35346752	0	1	3254	0
chr17	35343503	35344454	BT474_Burge_Thompson.55919	0	.	35343503	35344454	0	1	951	0
chr17	35343510	35350197	B_Cells_Pritchard.2236429	0	+	35343510	35350197	0	2	768,1399	0,5288
chr17	35343565	35344358	MIP101.47120	0	.	35343565	35344358	0	1	793	0
chr17	35345346	35346747	BT474_Burge_Thompson.55921	0	.	35345346	35346747	0	1	1401	0
chr17	35345450	35349952	REMC_BreastStem.34966	0	+	35345450	35349952	0	2	223,836	0,3666
chr17	35355772	35357002	BT474_Burge_Thompson.55928	0	.	35355772	35357002	0	1	1230	0
chr17	35355781	35356194	B_cells_Cheung.133898	0	.	35355781	35356194	0	1	413	0
chr17	35359990	35360571	BT474_Burge_Thompson.55930	0	.	35359990	35360571	0	1	581	0
chr17	35360836	35361368	BT474_Burge_Thompson.55931	0	.	35360836	35361368	0	1	532	0
chr17	35361587	35362531	REMC_LuminalBreast.68797	0	.	35361587	35362531	0	1	944	0
chr17	35362073	35362666	A549_Myers.57400	0	.	35362073	35362666	0	1	593	0
chr17	35369496	35370243	BT474_Burge_Thompson.55936	0	.	35369496	35370243	0	1	747	0
chr17	35410185	35410828	REMC_BreastStem.35027	0	.	35410185	35410828	0	1	643	0
chr17	35411415	35412173	REMC_BreastStem.35028	0	.	35411415	35412173	0	1	758	0
chr17	35420716	35421224	B_cells_Cheung.133911	0	.	35420716	35421224	0	1	508	0
chr17	35516351	35517074	REMC_MyoepithelialBreast.64117	0	.	35516351	35517074	0	1	723	0
chr17	35517331	35517639	B_Cells_Pritchard.2236921	0	.	35517331	35517639	0	1	308	0
chr17	35517769	35518471	B_Cells_Pritchard.2236923	0	.	35517769	35518471	0	1	702	0
chr17	35517831	35518391	BT474_Burge_Thompson.22799	0	.	35517831	35518391	0	1	560	0
chr17	35517910	35518305	A549_Myers.57441	0	.	35517910	35518305	0	1	395	0
chr17	35521033	35521404	A549_Myers.57443	0	.	35521033	35521404	0	1	371	0
chr17	35523265	35524030	B_cells_Cheung.133945	0	.	35523265	35524030	0	1	765	0
chr17	35530936	35531290	NEC_from_H9.51311	0	.	35530936	35531290	0	1	354	0
chr17	35919321	35920028	REMC_MyoepithelialBreast.64068	0	.	35919321	35920028	0	1	707	0
chr17	35921541	35921856	A549_Myers.57533	0	.	35921541	35921856	0	1	315	0
chr17	35921873	35942993	khalil_889	0	.	35921873	35942993	0	8	377,183,169,361,100,212,249,455	0,9065,9611,12758,18475,19082,20139,20665
chr17	35922072	35922400	A549_Myers.57534	0	.	35922072	35922400	0	1	328	0
chr17	35926704	35933626	HeLa_polyA+_Chen.24887	0	+	35926704	35933626	0	3	123,87,384	0,3788,6538
chr17	35926728	35932157	B_Cells_Pritchard.2237627	0	+	35926728	35932157	0	2	99,1665	0,3764
chr17	35926753	35931945	B_cells_Cheung.134048	0	+	35926753	35931945	0	2	74,1453	0,3739
chr17	35926802	35936779	Rinn_00025120	0	+	35926802	35936779	0	4	25,146,287,559	0,3689,6344,9418
chr17	35926803	35936780	HIT000276455	0	+	35926803	35936780	0	4	24,145,286,559	0,3689,6344,9418
chr17	35928816	35929260	A549_Myers.57541	0	.	35928816	35929260	0	1	444	0
chr17	35928881	35929230	B_cells_Cheung.134051	0	.	35928881	35929230	0	1	349	0
chr17	35929282	35929942	B_cells_Cheung.134052	0	.	35929282	35929942	0	1	660	0
chr17	35930186	35931945	B_cells_Cheung.134049	0	.	35930186	35931945	0	1	1759	0
chr17	35930335	35931654	prostate_carcinoma.68150	0	.	35930335	35931654	0	1	1319	0
chr17	35930407	35931547	A549_Myers.57543	0	.	35930407	35931547	0	1	1140	0
chr17	35930963	35931868	REMC_MyoepithelialBreast.64069	0	.	35930963	35931868	0	1	905	0
chr17	35932263	35937004	B_Cells_Pritchard.2237693	0	+	35932263	35937004	0	2	1170,783	0,3958
chr17	35932878	35934700	B_cells_Cheung.134056	0	.	35932878	35934700	0	1	1822	0
chr17	35932878	35936781	B_cells_Cheung.134055	0	+	35932878	35936781	0	2	555,560	0,3343
chr17	35933050	35936781	CD4_Plagnol_activated.44282	0	+	35933050	35936781	0	2	383,560	0,3171
chr17	35933076	35936779	Rinn_00025383	0	+	35933076	35936779	0	2	357,559	0,3144
chr17	35933077	35936738	MDAMB231_Thompson.15304	0	+	35933077	35936738	0	2	356,517	0,3144
chr17	35933109	35936732	REMC_BreastStem.35023	0	+	35933109	35936732	0	2	324,511	0,3112
chr17	35933239	35936886	REMC_MyoepithelialBreast.64071	0	+	35933239	35936886	0	2	194,665	0,2982
chr17	35933280	35936773	melanoma_Garraway_short_term_cultures.46713	0	+	35933280	35936773	0	2	153,552	0,2941
chr17	35933880	35934399	A549_Myers.57547	0	.	35933880	35934399	0	1	519	0
chr17	35936216	35936780	CD4_Snyder.51356	0	.	35936216	35936780	0	1	564	0
chr17	35936219	35936762	CD4_Plagnol_resting.43218	0	.	35936219	35936762	0	1	543	0
chr17	35936242	35936772	prostate_carcinoma.68151	0	.	35936242	35936772	0	1	530	0
chr17	35936317	35936677	K562.30825	0	.	35936317	35936677	0	1	360	0
chr17	35941264	35944838	B_cells_Cheung.134060	0	.	35941264	35944838	0	1	3574	0
chr17	35941423	35941770	A549_Myers.57552	0	.	35941423	35941770	0	1	347	0
chr17	35941461	35944800	B_Cells_Pritchard.2237715	0	-	35941461	35944800	0	2	2792,173	0,3166
chr17	35942046	35944498	CD4_Plagnol_resting.43219	0	.	35942046	35944498	0	1	2452	0
chr17	35943077	35943869	prostate_carcinoma.68152	0	.	35943077	35943869	0	1	792	0
chr17	35943379	35944381	REMC_MyoepithelialBreast.64074	0	.	35943379	35944381	0	1	1002	0
chr17	35943450	35944715	CD4_Plagnol_activated.44284	0	.	35943450	35944715	0	1	1265	0
chr17	35943869	35944236	CD4_Snyder.51358	0	.	35943869	35944236	0	1	367	0
chr17	35944534	35949466	REMC_MyoepithelialBreast.64075	0	.	35944534	35949466	0	1	4932	0
chr17	35945306	35948926	B_cells_Cheung.134062	0	.	35945306	35948926	0	1	3620	0
chr17	35945306	35953789	B_cells_Cheung.134063	0	-	35945306	35953789	0	2	3225,1041	0,7442
chr17	35945677	35948534	B_Cells_Pritchard.2237723	0	-	35945677	35948534	0	2	1445,1091	0,1766
chr17	35945677	35948534	B_Cells_Pritchard.2237721	0	+	35945677	35948534	0	2	1396,777	0,2080
chr17	35945705	35946849	CD4_Plagnol_activated.44285	0	.	35945705	35946849	0	1	1144	0
chr17	35946494	35947111	CD4_Plagnol_resting.46595	0	.	35946494	35947111	0	1	617	0
chr17	35946522	35947146	A549_Myers.57558	0	.	35946522	35947146	0	1	624	0
chr17	35949528	35952536	REMC_MyoepithelialBreast.64076	0	.	35949528	35952536	0	1	3008	0
chr17	35950528	35952244	CD4_Plagnol_resting.46807	0	.	35950528	35952244	0	1	1716	0
chr17	35950805	35953761	B_Cells_Pritchard.2237731	0	.	35950805	35953761	0	1	2956	0
chr17	35951198	35952394	REMC_BreastStem.35024	0	.	35951198	35952394	0	1	1196	0
chr17	35951375	35952111	A549_Myers.57562	0	.	35951375	35952111	0	1	736	0
chr17	35951515	35952739	B_cells_Cheung.134065	0	.	35951515	35952739	0	1	1224	0
chr17	35952330	35952803	A549_Myers.57563	0	.	35952330	35952803	0	1	473	0
chr17	35952730	35954347	REMC_MyoepithelialBreast.64077	0	.	35952730	35954347	0	1	1617	0
chr17	35954951	35956127	B_cells_Cheung.134068	0	.	35954951	35956127	0	1	1176	0
chr17	35955004	35956333	CD4_Plagnol_resting.46809	0	.	35955004	35956333	0	1	1329	0
chr17	35955008	35956332	CD4_Plagnol_activated.44289	0	.	35955008	35956332	0	1	1324	0
chr17	35955242	35957200	A549_Myers.57566	0	-	35955242	35957200	0	2	503,482	0,1476
chr17	35956735	35957676	CD4_Plagnol_activated.44290	0	.	35956735	35957676	0	1	941	0
chr17	35958076	35959107	BT474_Burge_Thompson.22828	0	.	35958076	35959107	0	1	1031	0
chr17	35958137	35958932	HepG2_Caltech_ENCODE.25483	0	.	35958137	35958932	0	1	795	0
chr17	35958372	35959773	A549_Myers.57570	0	.	35958372	35959773	0	1	1401	0
chr17	35958534	35959049	liver_polyA+.93131	0	.	35958534	35959049	0	1	515	0
chr17	35978816	35979725	REMC_BreastStem.35031	0	.	35978816	35979725	0	1	909	0
chr17	35980408	35982193	REMC_MyoepithelialBreast.64080	0	.	35980408	35982193	0	1	1785	0
chr17	35981452	35982024	REMC_BreastStem.35032	0	.	35981452	35982024	0	1	572	0
chr17	35992421	35992830	CD4_Snyder.51367	0	.	35992421	35992830	0	1	409	0
chr17	36011905	36012804	B_cells_Cheung.134075	0	.	36011905	36012804	0	1	899	0
chr17	36012187	36012602	CD4_Plagnol_resting.43241	0	.	36012187	36012602	0	1	415	0
chr17	36012223	36013079	CD4_Snyder.51370	0	.	36012223	36013079	0	1	856	0
chr17	36017079	36018338	CD4_Snyder.51374	0	.	36017079	36018338	0	1	1259	0
chr17	36025821	36026606	B_Cells_Pritchard.2237891	0	.	36025821	36026606	0	1	785	0
chr17	37201624	37202111	A549_Myers.57727	0	.	37201624	37202111	0	1	487	0
chr17	37203181	37203821	REMC_MyoepithelialBreast.64159	0	.	37203181	37203821	0	1	640	0
chr17	37203192	37204126	REMC_LuminalBreast.69093	0	.	37203192	37204126	0	1	934	0
chr17	37468965	37469761	REMC_LuminalBreast.69131	0	.	37468965	37469761	0	1	796	0
chr17	37469142	37469598	A549_Myers.57826	0	.	37469142	37469598	0	1	456	0
chr17	37472499	37479961	REMC_LuminalBreast.69133	0	.	37472499	37479961	0	1	7462	0
chr17	37475977	37476801	A549_Myers.57827	0	.	37475977	37476801	0	1	824	0
chr17	37476913	37477575	A549_Myers.57828	0	.	37476913	37477575	0	1	662	0
chr17	37477841	37478191	A549_Myers.57831	0	.	37477841	37478191	0	1	350	0
chr17	37479282	37479925	H1_polyA+.80270	0	.	37479282	37479925	0	1	643	0
chr17	37480084	37481059	REMC_LuminalBreast.69134	0	.	37480084	37481059	0	1	975	0
chr17	37480210	37481058	H1_polyA+.80271	0	.	37480210	37481058	0	1	848	0
chr17	37485138	37486334	H1_polyA+.80273	0	.	37485138	37486334	0	1	1196	0
chr17	37485974	37486452	A549_Myers.57833	0	.	37485974	37486452	0	1	478	0
chr17	37492595	37496288	REMC_LuminalBreast.69139	0	.	37492595	37496288	0	1	3693	0
chr17	37493672	37494688	B_cells_Cheung.134286	0	.	37493672	37494688	0	1	1016	0
chr17	37497034	37498615	REMC_BreastStem.35138	0	.	37497034	37498615	0	1	1581	0
chr17	37499913	37500526	B_Cells_Pritchard.2241203	0	.	37499913	37500526	0	1	613	0
chr17	37500676	37501263	B_Cells_Pritchard.2241205	0	.	37500676	37501263	0	1	587	0
chr17	37600171	37601623	Rinn_00025392	0	+	37600171	37601623	0	2	55,362	0,1090
chr17	37603265	37603620	CD4_Plagnol_activated.44458	0	.	37603265	37603620	0	1	355	0
chr17	37682952	37683487	CD4_Plagnol_resting.43368	0	.	37682952	37683487	0	1	535	0
chr17	37683448	37684259	CD4_Plagnol_activated.46259	0	.	37683448	37684259	0	1	811	0
chr17	37683562	37684258	CD4_Plagnol_resting.43369	0	.	37683562	37684258	0	1	696	0
chr17	37684507	37685061	CD4_Plagnol_activated.46260	0	.	37684507	37685061	0	1	554	0
chr17	37684562	37685045	REMC_LuminalBreast.69273	0	.	37684562	37685045	0	1	483	0
chr17	37685355	37686405	CD4_Plagnol_activated.46261	0	.	37685355	37686405	0	1	1050	0
chr17	37686669	37687894	B_Cells_Pritchard.2241491	0	+	37686669	37687894	0	1	1225	0
chr17	37686714	37687874	REMC_MyoepithelialBreast.64221	0	.	37686714	37687874	0	1	1160	0
chr17	37686722	37687911	CD4_Plagnol_activated.46262	0	.	37686722	37687911	0	1	1189	0
chr17	37687169	37687891	K562.31538	0	.	37687169	37687891	0	1	722	0
chr17	37687201	37688705	REMC_LuminalBreast.69276	0	.	37687201	37688705	0	1	1504	0
chr17	37798182	37798961	REMC_MyoepithelialBreast.64458	0	.	37798182	37798961	0	1	779	0
chr17	37800192	37801250	REMC_LuminalBreast.69332	0	.	37800192	37801250	0	1	1058	0
chr17	37830274	37831288	prostate_carcinoma.73101	0	.	37830274	37831288	0	1	1014	0
chr17	37830293	37830715	B_Cells_Pritchard.2241909	0	.	37830293	37830715	0	1	422	0
chr17	37930207	37932231	REMC_MyoepithelialBreast.64232	0	.	37930207	37932231	0	1	2024	0
chr17	37931595	37932158	REMC_BreastStem.35187	0	.	37931595	37932158	0	1	563	0
chr17	37932540	37934039	REMC_MyoepithelialBreast.64233	0	.	37932540	37934039	0	1	1499	0
chr17	37934141	37937949	REMC_MyoepithelialBreast.64234	0	.	37934141	37937949	0	1	3808	0
chr17	37961882	37962192	B_cells_Cheung.134814	0	.	37961882	37962192	0	1	310	0
chr17	37961893	37962236	HepG2_Caltech_ENCODE.26915	0	.	37961893	37962236	0	1	343	0
chr17	37962807	37963881	REMC_LuminalBreast.69178	0	.	37962807	37963881	0	1	1074	0
chr17	37963415	37963871	BT20_Thompson.15497	0	.	37963415	37963871	0	1	456	0
chr17	38288693	38289094	B_Cells_Pritchard.2242513	0	.	38288693	38289094	0	1	401	0
chr17	38340223	38340587	B_Cells_Pritchard.2242701	0	.	38340223	38340587	0	1	364	0
chr17	38401462	38402154	B_cells_Cheung.136285	0	.	38401462	38402154	0	1	692	0
chr17	38438929	38442383	B_Cells_Pritchard.2242947	0	+	38438929	38442383	0	1	3454	0
chr17	38439019	38442422	B_cells_Cheung.136299	0	.	38439019	38442422	0	3	2226,539,573	0,2226,2830
chr17	38440424	38442401	H1_polyA+.81296	0	.	38440424	38442401	0	1	1977	0
chr17	38441655	38442323	melanoma_Garraway_short_term_cultures.46983	0	.	38441655	38442323	0	1	668	0
chr17	38444394	38445713	H1_polyA+.81298	0	.	38444394	38445713	0	1	1319	0
chr17	38444403	38445658	B_cells_Cheung.136301	0	.	38444403	38445658	0	1	1255	0
chr17	38444967	38445660	B_Cells_Pritchard.2242957	0	+	38444967	38445660	0	1	693	0
chr17	38728881	38736602	HIT000265142	0	-	38728881	38736602	0	5	262,59,386,97,257	0,2223,2831,7145,7464
chr17	38728962	38736588	ENST00000433702	0	-	38728962	38736588	0	5	181,59,386,97,243	0,2142,2750,7064,7383
chr17	38728996	38738788	testes_Burge.36860	0	-	38728996	38738788	0	3	147,261,112	0,2108,9680
chr17	38729580	38732996	REMC_BreastStem.35262	0	.	38729580	38732996	0	1	3416	0
chr17	38729948	38730487	ZR751_Thompson.16792	0	.	38729948	38730487	0	1	539	0
chr17	38730032	38730376	CD4_Plagnol_resting.43545	0	.	38730032	38730376	0	1	344	0
chr17	38730581	38732868	melanoma_Garraway_short_term_cultures.47028	0	.	38730581	38732868	0	1	2287	0
chr17	38730809	38732420	T47D_Burge_Thompson.20191	0	.	38730809	38732420	0	1	1611	0
chr17	38730814	38732906	CD4_Plagnol_resting.43547	0	.	38730814	38732906	0	1	2092	0
chr17	38730815	38732924	ZR751_Thompson.16795	0	.	38730815	38732924	0	1	2109	0
chr17	38731048	38732281	H9_polyA+.30993	0	.	38731048	38732281	0	1	1233	0
chr17	38731102	38732132	testes_Burge.36859	0	.	38731102	38732132	0	1	1030	0
chr17	38731460	38732275	kidney_Raymond.71317	0	.	38731460	38732275	0	1	815	0
chr17	38731729	38732057	liver_polyA+.93542	0	.	38731729	38732057	0	1	328	0
chr17	38731820	38732411	MIP101.47369	0	.	38731820	38732411	0	1	591	0
chr17	38734840	38756714	breast_Burge.28089	0	+	38734840	38756714	0	3	127,26,1099	0,3019,20775
chr17	38735673	38736194	melanoma_Garraway_short_term_cultures.47030	0	.	38735673	38736194	0	1	521	0
chr17	38735681	38736184	CD4_Plagnol_resting.43552	0	.	38735681	38736184	0	1	503	0
chr17	38735681	38736174	prostate_carcinoma.68360	0	.	38735681	38736174	0	1	493	0
chr17	38735682	38736204	CD4_Plagnol_activated.44624	0	.	38735682	38736204	0	1	522	0
chr17	38735689	38736176	H9_polyA+.30994	0	.	38735689	38736176	0	1	487	0
chr17	38735695	38736177	T47D_Burge_Thompson.20193	0	.	38735695	38736177	0	1	482	0
chr17	38735709	38736160	MeWo_Garraway.24840	0	.	38735709	38736160	0	1	451	0
chr17	38735733	38736140	brain_AmbionMAQC.30530	0	.	38735733	38736140	0	1	407	0
chr17	38735784	38736190	testes_Burge.36861	0	.	38735784	38736190	0	1	406	0
chr17	38736414	38738825	REMC_MyoepithelialBreast.64338	0	.	38736414	38738825	0	1	2411	0
chr17	38736436	38737991	CD4_Plagnol_activated.44625	0	+	38736436	38737991	0	2	88,995	0,560
chr17	38737113	38756868	liver_polyA+.93531	0	+	38737113	38756868	0	2	107,1253	0,18502
chr17	38738282	38738810	REMC_BreastStem.35266	0	.	38738282	38738810	0	1	528	0
chr17	38738373	38738820	H1_polyA+.80459	0	.	38738373	38738820	0	1	447	0
chr17	38744489	38745298	REMC_LuminalBreast.69437	0	.	38744489	38745298	0	1	809	0
chr17	38744897	38745341	B_cells_Cheung.134519	0	.	38744897	38745341	0	1	444	0
chr17	38745854	38751967	REMC_LuminalBreast.69438	0	.	38745854	38751967	0	1	6113	0
chr17	38747206	38750036	B_cells_Cheung.134522	0	.	38747206	38750036	0	1	2830	0
chr17	38747584	38749275	B_Cells_Pritchard.2243237	0	+	38747584	38749275	0	1	1691	0
chr17	38748615	38753618	REMC_MyoepithelialBreast.64340	0	.	38748615	38753618	0	1	5003	0
chr17	38750390	38750958	MIP101.47372	0	.	38750390	38750958	0	1	568	0
chr17	38752072	38753913	REMC_BreastStem.35270	0	.	38752072	38753913	0	1	1841	0
chr17	38752088	38778728	REMC_LuminalBreast.69455	0	.	38752088	38778728	0	1	26640	0
chr17	38752100	38753127	B_cells_Cheung.134524	0	.	38752100	38753127	0	1	1027	0
chr17	38752132	38753127	HepG2_Caltech_ENCODE.25656	0	.	38752132	38753127	0	1	995	0
chr17	38752150	38753133	H1_polyA+.80464	0	.	38752150	38753133	0	1	983	0
chr17	38753196	38757753	B_cells_Cheung.134525	0	.	38753196	38757753	0	1	4557	0
chr17	38753900	38778722	REMC_MyoepithelialBreast.64341	0	.	38753900	38778722	0	1	24822	0
chr17	38754203	38778724	REMC_BreastStem.35271	0	.	38754203	38778724	0	1	24521	0
chr17	38754938	38757033	H1_polyA+.80467	0	.	38754938	38757033	0	1	2095	0
chr17	38755041	38757256	melanoma_Garraway_short_term_cultures.47037	0	.	38755041	38757256	0	1	2215	0
chr17	38755159	38756889	H9_polyA+.30997	0	.	38755159	38756889	0	1	1730	0
chr17	38755226	38756745	K562.30993	0	.	38755226	38756745	0	1	1519	0
chr17	38755232	38756778	HeLa_polyA+_Chen.25121	0	.	38755232	38756778	0	1	1546	0
chr17	38755364	38756708	BT474_Burge_Thompson.23055	0	.	38755364	38756708	0	1	1344	0
chr17	38755374	38765272	liver_polyA+.93547	0	-	38755374	38765272	0	2	161,605	0,9293
chr17	38755374	38756726	CD4_Plagnol_resting.43560	0	.	38755374	38756726	0	1	1352	0
chr17	38755396	38756710	ZR751_Thompson.16807	0	.	38755396	38756710	0	1	1314	0
chr17	38755787	38778722	REMC_MyoepithelialBreast.64342	0	-	38755787	38778722	0	2	16611,4651	0,18284
chr17	38756061	38756718	MCF10A_Thompson.14921	0	.	38756061	38756718	0	1	657	0
chr17	38756067	38756422	colon_Burge.26329	0	.	38756067	38756422	0	1	355	0
chr17	38756074	38756719	MDAMB231_Thompson.15443	0	.	38756074	38756719	0	1	645	0
chr17	38756074	38756414	lymph_node_Burge.34649	0	.	38756074	38756414	0	1	340	0
chr17	38756075	38756612	skeletal_muscle_Burge.20594	0	.	38756075	38756612	0	1	537	0
chr17	38756856	38759394	HeLa_polyA+_Chen.25115	0	.	38756856	38759394	0	1	2538	0
chr17	38757977	38760742	prostate_carcinoma.68363	0	.	38757977	38760742	0	1	2765	0
chr17	38758402	38761244	H1_polyA+.80468	0	.	38758402	38761244	0	1	2842	0
chr17	38758494	38759841	H9_polyA+.30999	0	.	38758494	38759841	0	1	1347	0
chr17	38759177	38760934	melanoma_Garraway_short_term_cultures.47039	0	.	38759177	38760934	0	1	1757	0
chr17	38759449	38761962	HeLa_polyA+_Chen.25116	0	.	38759449	38761962	0	1	2513	0
chr17	38759475	38759835	B_cells_Cheung.134529	0	.	38759475	38759835	0	1	360	0
chr17	38760757	38761399	H9_polyA+.31000	0	.	38760757	38761399	0	1	642	0
chr17	38760795	38761384	prostate_carcinoma.68366	0	.	38760795	38761384	0	1	589	0
chr17	38760840	38761500	B_cells_Cheung.134531	0	.	38760840	38761500	0	1	660	0
chr17	38761945	38763192	melanoma_Garraway_short_term_cultures.47040	0	.	38761945	38763192	0	1	1247	0
chr17	38762025	38764552	HeLa_polyA+_Chen.25117	0	.	38762025	38764552	0	1	2527	0
chr17	38762129	38763231	B_cells_Cheung.134533	0	.	38762129	38763231	0	1	1102	0
chr17	38763259	38764018	H9_polyA+.31001	0	.	38763259	38764018	0	1	759	0
chr17	38763297	38764532	melanoma_Garraway_short_term_cultures.47041	0	.	38763297	38764532	0	1	1235	0
chr17	38763388	38764552	prostate_normal.40352	0	.	38763388	38764552	0	1	1164	0
chr17	38763391	38764576	B_cells_Cheung.134534	0	.	38763391	38764576	0	1	1185	0
chr17	38764647	38766276	B_cells_Cheung.134535	0	.	38764647	38766276	0	1	1629	0
chr17	38764672	38766018	B_Cells_Pritchard.2243283	0	-	38764672	38766018	0	1	1346	0
chr17	38764750	38766887	prostate_carcinoma.68370	0	.	38764750	38766887	0	1	2137	0
chr17	38764753	38765567	H1_polyA+.80470	0	.	38764753	38765567	0	1	814	0
chr17	38764779	38767172	HeLa_polyA+_Chen.25118	0	.	38764779	38767172	0	1	2393	0
chr17	38765405	38766088	liver_polyA+.93549	0	.	38765405	38766088	0	1	683	0
chr17	38765414	38765795	kidney_Gilad.60478	0	.	38765414	38765795	0	1	381	0
chr17	38765703	38766687	H1_polyA+.80471	0	.	38765703	38766687	0	1	984	0
chr17	38765794	38766167	H9_polyA+.31003	0	.	38765794	38766167	0	1	373	0
chr17	38769134	38770414	HeLa_polyA+_Chen.25119	0	.	38769134	38770414	0	1	1280	0
chr17	38769967	38770426	B_cells_Cheung.134538	0	.	38769967	38770426	0	1	459	0
chr17	38771196	38778706	H1_polyA+.80472	0	.	38771196	38778706	0	1	7510	0
chr17	38772592	38778723	HeLa_polyA+_Chen.25126	0	.	38772592	38778723	0	1	6131	0
chr17	38772875	38774686	melanoma_Garraway_short_term_cultures.47046	0	.	38772875	38774686	0	1	1811	0
chr17	38773062	38773579	B_Cells_Pritchard.2243305	0	-	38773062	38773579	0	1	517	0
chr17	38773101	38773882	prostate_carcinoma.68364	0	.	38773101	38773882	0	1	781	0
chr17	38773163	38773817	H9_polyA+.31009	0	.	38773163	38773817	0	1	654	0
chr17	38773179	38773876	B_cells_Cheung.134544	0	.	38773179	38773876	0	1	697	0
chr17	38773205	38773713	prostate_normal.40353	0	.	38773205	38773713	0	1	508	0
chr17	38773215	38773700	A549_Myers.58048	0	.	38773215	38773700	0	1	485	0
chr17	38774128	38774533	MeWo_Garraway.24847	0	.	38774128	38774533	0	1	405	0
chr17	38775908	38776776	B_Cells_Pritchard.2243311	0	.	38775908	38776776	0	1	868	0
chr17	38775923	38777521	melanoma_Garraway_short_term_cultures.47048	0	.	38775923	38777521	0	1	1598	0
chr17	38776096	38778698	B_cells_Cheung.134546	0	.	38776096	38778698	0	1	2602	0
chr17	38776141	38776746	H9_polyA+.31011	0	.	38776141	38776746	0	1	605	0
chr17	38776883	38778683	B_Cells_Pritchard.2243313	0	.	38776883	38778683	0	1	1800	0
chr17	38776889	38777427	BT474_Burge_Thompson.23057	0	.	38776889	38777427	0	1	538	0
chr17	38777075	38777459	H9_polyA+.31012	0	.	38777075	38777459	0	1	384	0
chr17	38777650	38778684	melanoma_Garraway_short_term_cultures.47049	0	.	38777650	38778684	0	1	1034	0
chr17	38777687	38778346	MeWo_Garraway.24849	0	.	38777687	38778346	0	1	659	0
chr17	38779368	38787911	REMC_LuminalBreast.69457	0	.	38779368	38787911	0	1	8543	0
chr17	38779649	38783160	REMC_BreastStem.35273	0	.	38779649	38783160	0	1	3511	0
chr17	38779651	38783196	REMC_MyoepithelialBreast.64343	0	.	38779651	38783196	0	1	3545	0
chr17	38779687	38781980	melanoma_Garraway_short_term_cultures.47050	0	.	38779687	38781980	0	1	2293	0
chr17	38779692	38781204	prostate_carcinoma.68382	0	.	38779692	38781204	0	1	1512	0
chr17	38779719	38783154	B_Cells_Pritchard.2243315	0	-	38779719	38783154	0	2	667,689	0,2746
chr17	38779735	38783181	H1_polyA+.80474	0	.	38779735	38783181	0	1	3446	0
chr17	38779748	38782386	HeLa_polyA+_Chen.25124	0	.	38779748	38782386	0	1	2638	0
chr17	38779755	38781571	B_cells_Cheung.134547	0	.	38779755	38781571	0	1	1816	0
chr17	38779810	38781109	H9_polyA+.31015	0	.	38779810	38781109	0	1	1299	0
chr17	38780102	38780505	A549_Myers.58053	0	.	38780102	38780505	0	1	403	0
chr17	38783363	38787908	REMC_BreastStem.35274	0	.	38783363	38787908	0	1	4545	0
chr17	38783383	38787912	REMC_MyoepithelialBreast.64344	0	.	38783383	38787912	0	1	4529	0
chr17	38783391	38785294	melanoma_Garraway_short_term_cultures.47052	0	.	38783391	38785294	0	1	1903	0
chr17	38783397	38786708	H1_polyA+.80475	0	.	38783397	38786708	0	1	3311	0
chr17	38783397	38785474	B_cells_Cheung.134549	0	.	38783397	38785474	0	1	2077	0
chr17	38783404	38784478	CD4_Plagnol_activated.44633	0	.	38783404	38784478	0	1	1074	0
chr17	38783420	38784444	B_Cells_Pritchard.2243331	0	.	38783420	38784444	0	1	1024	0
chr17	38783424	38784501	HeLa_polyA+_Chen.25133	0	.	38783424	38784501	0	1	1077	0
chr17	38784586	38785284	B_Cells_Pritchard.2243333	0	.	38784586	38785284	0	1	698	0
chr17	38784596	38787912	HeLa_polyA+_Chen.25135	0	.	38784596	38787912	0	1	3316	0
chr17	38784617	38785280	H9_polyA+.31020	0	.	38784617	38785280	0	1	663	0
chr17	38788121	38794916	REMC_MyoepithelialBreast.64345	0	.	38788121	38794916	0	1	6795	0
chr17	38788522	38798086	REMC_LuminalBreast.69456	0	.	38788522	38798086	0	1	9564	0
chr17	38788596	38798095	REMC_BreastStem.35272	0	.	38788596	38798095	0	1	9499	0
chr17	38788750	38790581	B_cells_Cheung.134542	0	.	38788750	38790581	0	1	1831	0
chr17	38788771	38790396	melanoma_Garraway_short_term_cultures.47054	0	.	38788771	38790396	0	1	1625	0
chr17	38788789	38790403	B_Cells_Pritchard.2243339	0	.	38788789	38790403	0	1	1614	0
chr17	38788837	38789460	HeLa_polyA+_Chen.25136	0	.	38788837	38789460	0	1	623	0
chr17	38790413	38793483	HIT000007213	0	-	38790413	38793483	0	1	3070	0
chr17	38790656	38794329	B_cells_Cheung.134543	0	.	38790656	38794329	0	1	3673	0
chr17	38790668	38791586	HeLa_polyA+_Chen.25139	0	.	38790668	38791586	0	1	918	0
chr17	38790670	38794659	melanoma_Garraway_short_term_cultures.47055	0	.	38790670	38794659	0	1	3989	0
chr17	38790683	38791561	B_Cells_Pritchard.2243343	0	.	38790683	38791561	0	1	878	0
chr17	38790705	38792382	H1_polyA+.80477	0	.	38790705	38792382	0	1	1677	0
chr17	38790735	38791681	H9_polyA+.31023	0	.	38790735	38791681	0	1	946	0
chr17	38791217	38791590	prostate_carcinoma.68388	0	.	38791217	38791590	0	1	373	0
chr17	38792671	38794654	H1_polyA+.80473	0	.	38792671	38794654	0	1	1983	0
chr17	38795049	38798543	REMC_MyoepithelialBreast.64346	0	.	38795049	38798543	0	1	3494	0
chr17	38795545	38797348	HeLa_polyA+_Chen.25129	0	.	38795545	38797348	0	1	1803	0
chr17	38795621	38798046	B_cells_Cheung.134554	0	.	38795621	38798046	0	1	2425	0
chr17	38795647	38797125	prostate_normal.40362	0	.	38795647	38797125	0	1	1478	0
chr17	38795666	38797946	prostate_carcinoma.68390	0	.	38795666	38797946	0	1	2280	0
chr17	38795679	38796713	H9_polyA+.31025	0	.	38795679	38796713	0	1	1034	0
chr17	38795688	38797913	melanoma_Garraway_short_term_cultures.47056	0	.	38795688	38797913	0	1	2225	0
chr17	38795776	38796492	MeWo_Garraway.24855	0	.	38795776	38796492	0	1	716	0
chr17	38797311	38797923	CD4_Plagnol_activated.44636	0	.	38797311	38797923	0	1	612	0
chr17	38797416	38797916	HeLa_polyA+_Chen.25128	0	.	38797416	38797916	0	1	500	0
chr17	38801332	38801895	REMC_LuminalBreast.69342	0	.	38801332	38801895	0	1	563	0
chr17	38801610	38802324	A549_Myers.58063	0	.	38801610	38802324	0	1	714	0
chr17	38801632	38803265	HepG2_Caltech_ENCODE.25661	0	.	38801632	38803265	0	1	1633	0
chr17	38801703	38802347	CD4_Plagnol_resting.43565	0	.	38801703	38802347	0	1	644	0
chr17	38801793	38802351	CD4_Plagnol_activated.44638	0	.	38801793	38802351	0	1	558	0
chr17	38801978	38802306	T47D_Burge_Thompson.20206	0	.	38801978	38802306	0	1	328	0
chr17	38802050	38803270	REMC_LuminalBreast.69343	0	.	38802050	38803270	0	1	1220	0
chr17	38802178	38802832	REMC_MyoepithelialBreast.64349	0	.	38802178	38802832	0	1	654	0
chr17	38836967	38837334	liver_polyA+.93559	0	.	38836967	38837334	0	1	367	0
chr17	38837931	38839263	HepG2_Caltech_ENCODE.25609	0	.	38837931	38839263	0	1	1332	0
chr17	38838314	38839258	H1_polyA+.80488	0	.	38838314	38839258	0	1	944	0
chr17	38838402	38839267	REMC_BreastStem.35258	0	.	38838402	38839267	0	1	865	0
chr17	38839612	38839971	A549_Myers.58079	0	.	38839612	38839971	0	1	359	0
chr17	38864510	38865354	liver_polyA+.93569	0	.	38864510	38865354	0	1	844	0
chr17	38864785	38865354	kidney_Gilad.60497	0	.	38864785	38865354	0	1	569	0
chr17	38875427	38875875	kidney_Gilad.60516	0	.	38875427	38875875	0	1	448	0
chr17	38879958	38898243	liver_polyA+.93584	0	-	38879958	38898243	0	6	106,284,467,73,60,920	0,15130,16088,16776,16917,17365
chr17	38881488	38884003	liver_polyA+.93588	0	+	38881488	38884003	0	2	1594,59	0,2456
chr17	38881488	38883218	liver_polyA+.93589	0	.	38881488	38883218	0	1	1730	0
chr17	38881833	38884003	kidney_Gilad.60518	0	+	38881833	38884003	0	2	1249,59	0,2111
chr17	38889195	38890122	liver_polyA+.93594	0	.	38889195	38890122	0	1	927	0
chr17	38897126	38898243	liver_polyA+.93585	0	.	38897126	38898243	0	1	1117	0
chr17	39012937	39015284	REMC_LuminalBreast.69383	0	.	39012937	39015284	0	1	2347	0
chr17	39015433	39017431	REMC_LuminalBreast.69384	0	.	39015433	39017431	0	1	1998	0
chr17	39015938	39017214	melanoma_Garraway_short_term_cultures.47081	0	.	39015938	39017214	0	1	1276	0
chr17	39023282	39025160	REMC_MyoepithelialBreast.64367	0	.	39023282	39025160	0	1	1878	0
chr17	39023731	39025816	REMC_LuminalBreast.69387	0	.	39023731	39025816	0	1	2085	0
chr17	39024617	39025738	B_Cells_Pritchard.2244043	0	.	39024617	39025738	0	1	1121	0
chr17	39046920	39048113	REMC_LuminalBreast.69390	0	.	39046920	39048113	0	1	1193	0
chr17	39048423	39049548	REMC_MyoepithelialBreast.64370	0	.	39048423	39049548	0	1	1125	0
chr17	39049148	39050050	HepG2_Caltech_ENCODE.25625	0	.	39049148	39050050	0	1	902	0
chr17	39596550	39597943	B_cells_Cheung.135980	0	.	39596550	39597943	0	1	1393	0
chr17	39597216	39597903	REMC_LuminalBreast.69466	0	.	39597216	39597903	0	1	687	0
chr17	39597233	39597639	CD4_Plagnol_resting.43624	0	.	39597233	39597639	0	1	406	0
chr17	39597237	39597906	H1_polyA+.80695	0	.	39597237	39597906	0	1	669	0
chr17	39597241	39597834	HepG2_Caltech_ENCODE.25666	0	.	39597241	39597834	0	1	593	0
chr17	39597243	39598013	B_Cells_Pritchard.2253879	0	+	39597243	39598013	0	1	770	0
chr17	39597254	39597935	HeLa_polyA+_Chen.25183	0	.	39597254	39597935	0	1	681	0
chr17	39598562	39601961	B_cells_Cheung.135982	0	.	39598562	39601961	0	1	3399	0
chr17	39598634	39601960	REMC_LuminalBreast.69467	0	.	39598634	39601960	0	1	3326	0
chr17	39599814	39600474	prostate_carcinoma.69092	0	.	39599814	39600474	0	1	660	0
chr17	39599890	39600648	MIP101.48945	0	.	39599890	39600648	0	1	758	0
chr17	39599904	39600742	brain_AmbionMAQC.30584	0	.	39599904	39600742	0	1	838	0
chr17	39600470	39601445	HeLa_polyA+_Chen.25184	0	.	39600470	39601445	0	1	975	0
chr17	39633551	39634172	BT20_Thompson.15165	0	.	39633551	39634172	0	1	621	0
chr17	39654808	39656609	HIT000099142	0	+	39654808	39656609	0	1	1801	0
chr17	39654878	39655589	NEC_from_H9.51950	0	.	39654878	39655589	0	1	711	0
chr17	39655060	39655786	liver_polyA+.93694	0	.	39655060	39655786	0	1	726	0
chr17	39655227	39655650	lymph_node_Burge.34881	0	.	39655227	39655650	0	1	423	0
chr17	39655401	39656444	REMC_BreastStem.35349	0	.	39655401	39656444	0	1	1043	0
chr17	39655845	39656624	liver_polyA+.93695	0	.	39655845	39656624	0	1	779	0
chr17	39656093	39656482	NEC_from_H9.51953	0	.	39656093	39656482	0	1	389	0
chr17	39656213	39656581	CD4_Snyder.51749	0	.	39656213	39656581	0	1	368	0
chr17	39662387	39662992	H9_polyA+.31093	0	-	39662387	39662992	0	2	160,247	0,358
chr17	39662575	39663006	HepG2_Caltech_ENCODE.25671	0	.	39662575	39663006	0	1	431	0
chr17	39662644	39663007	K562.31051	0	.	39662644	39663007	0	1	363	0
chr17	39662647	39662991	BT20_Thompson.15098	0	.	39662647	39662991	0	1	344	0
chr17	39662688	39663138	CD4_Plagnol_activated.44722	0	.	39662688	39663138	0	1	450	0
chr17	39662707	39663008	ZR751_Thompson.16853	0	.	39662707	39663008	0	1	301	0
chr17	39702700	39703168	B_Cells_Pritchard.2245581	0	.	39702700	39703168	0	1	468	0
chr17	39714132	39714435	B_Cells_Pritchard.2245627	0	.	39714132	39714435	0	1	303	0
chr17	39716689	39717257	B_cells_Cheung.134777	0	.	39716689	39717257	0	1	568	0
chr17	39716716	39717536	H1_polyA+.80614	0	.	39716716	39717536	0	1	820	0
chr17	39716724	39717489	prostate_carcinoma.68617	0	.	39716724	39717489	0	1	765	0
chr17	39725715	39727885	REMC_LuminalBreast.69493	0	.	39725715	39727885	0	1	2170	0
chr17	39731799	39733987	REMC_LuminalBreast.69495	0	.	39731799	39733987	0	1	2188	0
chr17	39732467	39733658	BT20_Thompson.15104	0	.	39732467	39733658	0	1	1191	0
chr17	39732523	39733364	BT474_Burge_Thompson.23120	0	.	39732523	39733364	0	1	841	0
chr17	39732842	39733726	B_cells_Cheung.134784	0	.	39732842	39733726	0	1	884	0
chr17	39732852	39733703	ZR751_Thompson.16856	0	.	39732852	39733703	0	1	851	0
chr17	39732853	39735510	H1_polyA+.80619	0	.	39732853	39735510	0	1	2657	0
chr17	39732861	39733683	T47D_Burge_Thompson.20258	0	.	39732861	39733683	0	1	822	0
chr17	39939017	39949402	A549_Myers.58298	0	+	39939017	39949402	0	3	226,50,70	0,6639,10315
chr17	39939699	39940221	H1_polyA+.80681	0	.	39939699	39940221	0	1	522	0
chr17	39966468	39966803	A549_Myers.58300	0	.	39966468	39966803	0	1	335	0
chr17	39984529	39985620	H1_polyA+.80684	0	.	39984529	39985620	0	1	1091	0
chr17	40001980	40003671	REMC_LuminalBreast.69520	0	.	40001980	40003671	0	1	1691	0
chr17	40003050	40003742	REMC_BreastStem.35365	0	.	40003050	40003742	0	1	692	0
chr17	40006262	40006932	REMC_BreastStem.35368	0	.	40006262	40006932	0	1	670	0
chr17	40006376	40006884	melanoma_Garraway_short_term_cultures.47224	0	.	40006376	40006884	0	1	508	0
chr17	40007042	40007835	REMC_LuminalBreast.69521	0	.	40007042	40007835	0	1	793	0
chr17	40007051	40007906	REMC_BreastStem.35369	0	.	40007051	40007906	0	1	855	0
chr17	40014632	40016329	REMC_BreastStem.35374	0	.	40014632	40016329	0	1	1697	0
chr17	40016606	40017902	REMC_BreastStem.35375	0	.	40016606	40017902	0	1	1296	0
chr17	40026382	40027402	REMC_BreastStem.35377	0	.	40026382	40027402	0	1	1020	0
chr17	40029225	40061065	pHIT000029467	0	+	40029225	40061065	0	8	75,135,129,118,106,113,38,27	0,3829,5528,10629,12225,12863,14296,31813
chr17	40029225	40042117	pHIT000090106	0	+	40029225	40042117	0	5	75,135,129,118,29	0,3829,5528,10629,12863
chr17	40029225	40042117	pHIT000117214	0	+	40029225	40042117	0	5	75,135,129,124,29	0,3829,5528,12225,12863
chr17	40029225	40040055	pHIT000117212	0	+	40029225	40040055	0	4	75,135,129,201	0,3829,5528,10629
chr17	40037436	40038070	A549_Myers.58313	0	.	40037436	40038070	0	1	634	0
chr17	40040653	40041229	A549_Myers.58314	0	.	40040653	40041229	0	1	576	0
chr17	40060198	40060592	A549_Myers.58316	0	.	40060198	40060592	0	1	394	0
chr17	40078949	40080576	Rinn_00025662	0	-	40078949	40080576	0	2	649,399	0,1228
chr17	40186244	40187522	H1_polyA+.80716	0	.	40186244	40187522	0	1	1278	0
chr17	40186271	40186802	A549_Myers.58330	0	.	40186271	40186802	0	1	531	0
chr17	40189859	40190420	B_Cells_Pritchard.2246587	0	-	40189859	40190420	0	1	561	0
chr17	40219216	40220518	REMC_LuminalBreast.69531	0	.	40219216	40220518	0	1	1302	0
chr17	40219826	40220769	REMC_BreastStem.35385	0	.	40219826	40220769	0	1	943	0
chr17	40220376	40220981	prostate_carcinoma.68739	0	.	40220376	40220981	0	1	605	0
chr17	40221846	40223131	REMC_MyoepithelialBreast.64494	0	.	40221846	40223131	0	1	1285	0
chr17	40222321	40224134	REMC_BreastStem.35387	0	.	40222321	40224134	0	1	1813	0
chr17	40223285	40224004	REMC_MyoepithelialBreast.64495	0	.	40223285	40224004	0	1	719	0
chr17	40223634	40224067	B_cells_Cheung.134910	0	.	40223634	40224067	0	1	433	0
chr17	40225657	40226273	REMC_BreastStem.35390	0	.	40225657	40226273	0	1	616	0
chr17	40225668	40226277	REMC_MyoepithelialBreast.64496	0	.	40225668	40226277	0	1	609	0
chr17	40225796	40226276	liver_polyA+.93772	0	.	40225796	40226276	0	1	480	0
chr17	40227165	40227519	NEC_from_H9.52042	0	.	40227165	40227519	0	1	354	0
chr17	40265179	40266275	REMC_LuminalBreast.69546	0	.	40265179	40266275	0	1	1096	0
chr17	40266386	40269621	REMC_LuminalBreast.69547	0	.	40266386	40269621	0	1	3235	0
chr17	40266469	40268339	REMC_MyoepithelialBreast.64509	0	.	40266469	40268339	0	1	1870	0
chr17	40268088	40268670	REMC_BreastStem.35419	0	.	40268088	40268670	0	1	582	0
chr17	40268417	40269487	REMC_MyoepithelialBreast.64510	0	.	40268417	40269487	0	1	1070	0
chr17	40271302	40272470	REMC_LuminalBreast.69549	0	.	40271302	40272470	0	1	1168	0
chr17	40273146	40275261	REMC_MyoepithelialBreast.64512	0	.	40273146	40275261	0	1	2115	0
chr17	40273171	40274135	REMC_LuminalBreast.69550	0	.	40273171	40274135	0	1	964	0
chr17	40273426	40274127	REMC_BreastStem.35420	0	.	40273426	40274127	0	1	701	0
chr17	40278149	40278612	HeLa_polyA+_Chen.25241	0	.	40278149	40278612	0	1	463	0
chr17	40278157	40278607	B_cells_Cheung.134944	0	.	40278157	40278607	0	1	450	0
chr17	40278165	40278618	H1_polyA+.80746	0	.	40278165	40278618	0	1	453	0
chr17	40349528	40350110	A549_Myers.58373	0	.	40349528	40350110	0	1	582	0
chr17	40402922	40403478	A549_Myers.58393	0	.	40402922	40403478	0	1	556	0
chr17	40412202	40412568	B_Cells_Pritchard.2247051	0	.	40412202	40412568	0	1	366	0
chr17	40412836	40413214	A549_Myers.58395	0	.	40412836	40413214	0	1	378	0
chr17	40421987	40422701	prostate_carcinoma.69156	0	.	40421987	40422701	0	1	714	0
chr17	40422182	40422710	A549_Myers.58397	0	.	40422182	40422710	0	1	528	0
chr17	40422240	40423064	B_Cells_Pritchard.2247085	0	.	40422240	40423064	0	1	824	0
chr17	40424761	40426198	prostate_carcinoma.69157	0	.	40424761	40426198	0	1	1437	0
chr17	40426408	40427749	prostate_carcinoma.69155	0	.	40426408	40427749	0	1	1341	0
chr17	40433155	40434882	B_Cells_Pritchard.2247143	0	.	40433155	40434882	0	1	1727	0
chr17	40433169	40435040	prostate_normal.40752	0	.	40433169	40435040	0	1	1871	0
chr17	40433480	40434945	brain_AmbionMAQC.30690	0	.	40433480	40434945	0	1	1465	0
chr17	40433597	40434131	REMC_MyoepithelialBreast.64551	0	.	40433597	40434131	0	1	534	0
chr17	40433623	40434838	MIP101.47676	0	.	40433623	40434838	0	1	1215	0
chr17	40433664	40434924	CD4_Plagnol_resting.43697	0	.	40433664	40434924	0	1	1260	0
chr17	40433941	40434267	A549_Myers.58400	0	.	40433941	40434267	0	1	326	0
chr17	40435278	40437593	REMC_LuminalBreast.69561	0	.	40435278	40437593	0	1	2315	0
chr17	40436009	40436629	CD4_Plagnol_resting.43698	0	.	40436009	40436629	0	1	620	0
chr17	40436159	40436469	B_cells_Cheung.134988	0	.	40436159	40436469	0	1	310	0
chr17	40442704	40444061	prostate_carcinoma.69165	0	.	40442704	40444061	0	1	1357	0
chr17	40443289	40444128	REMC_MyoepithelialBreast.64553	0	.	40443289	40444128	0	1	839	0
chr17	40443332	40444032	melanoma_Garraway_short_term_cultures.47275	0	.	40443332	40444032	0	1	700	0
chr17	40445524	40446107	prostate_carcinoma.69166	0	.	40445524	40446107	0	1	583	0
chr17	40445675	40446219	B_Cells_Pritchard.2247199	0	.	40445675	40446219	0	1	544	0
chr17	40445743	40446110	A549_Myers.58403	0	.	40445743	40446110	0	1	367	0
chr17	40446340	40446889	B_Cells_Pritchard.2247201	0	.	40446340	40446889	0	1	549	0
chr17	40451593	40452077	A549_Myers.58405	0	.	40451593	40452077	0	1	484	0
chr17	40452442	40453475	melanoma_Garraway_short_term_cultures.47277	0	.	40452442	40453475	0	1	1033	0
chr17	40452447	40454902	prostate_carcinoma.69170	0	.	40452447	40454902	0	1	2455	0
chr17	40453981	40455164	CD4_Plagnol_activated.44793	0	.	40453981	40455164	0	1	1183	0
chr17	40588059	40591918	H1_polyA+.80798	0	.	40588059	40591918	0	1	3859	0
chr17	40588062	40590265	REMC_BreastStem.35456	0	.	40588062	40590265	0	1	2203	0
chr17	40588217	40589181	brain_AmbionMAQC.30702	0	.	40588217	40589181	0	1	964	0
chr17	40588472	40589914	REMC_MyoepithelialBreast.64658	0	.	40588472	40589914	0	1	1442	0
chr17	40588472	40588987	T47D_Burge_Thompson.20425	0	.	40588472	40588987	0	1	515	0
chr17	40588512	40589112	HeLa_polyA+_Chen.25270	0	.	40588512	40589112	0	1	600	0
chr17	40588585	40589269	CD4_Plagnol_activated.44868	0	.	40588585	40589269	0	1	684	0
chr17	40588629	40589183	MCF7_Burge_Thompson.21684	0	.	40588629	40589183	0	1	554	0
chr17	40588660	40589259	melanoma_Garraway_short_term_cultures.47315	0	.	40588660	40589259	0	1	599	0
chr17	40590012	40591919	REMC_MyoepithelialBreast.64659	0	.	40590012	40591919	0	1	1907	0
chr17	40590818	40591915	REMC_BreastStem.35457	0	.	40590818	40591915	0	1	1097	0
chr17	40604482	40605519	H1_polyA+.80804	0	.	40604482	40605519	0	1	1037	0
chr17	40604755	40605297	BT474_Burge_Thompson.23173	0	.	40604755	40605297	0	1	542	0
chr17	40604758	40605381	ZR751_Thompson.16904	0	.	40604758	40605381	0	1	623	0
chr17	40605928	40606538	MIP101.47717	0	.	40605928	40606538	0	1	610	0
chr17	40605972	40606513	REMC_MyoepithelialBreast.64660	0	.	40605972	40606513	0	1	541	0
chr17	40608340	40609793	REMC_MyoepithelialBreast.64661	0	.	40608340	40609793	0	1	1453	0
chr17	40608643	40609673	H1_polyA+.80805	0	.	40608643	40609673	0	1	1030	0
chr17	40610671	40611741	REMC_MyoepithelialBreast.64662	0	.	40610671	40611741	0	1	1070	0
chr17	40615819	40617833	A549_Myers.58434	0	+	40615819	40617833	0	2	572,41	0,1973
chr17	40626369	40627177	B_cells_Cheung.135742	0	.	40626369	40627177	0	1	808	0
chr17	40631487	40632381	CD4_Plagnol_resting.45820	0	.	40631487	40632381	0	1	894	0
chr17	40631513	40632418	B_cells_Cheung.135744	0	.	40631513	40632418	0	1	905	0
chr17	40638714	40640865	B_cells_Cheung.135749	0	.	40638714	40640865	0	1	2151	0
chr17	40643872	40646089	CD4_Plagnol_activated.45523	0	.	40643872	40646089	0	1	2217	0
chr17	40644163	40646088	B_cells_Cheung.135751	0	.	40644163	40646088	0	2	826,1033	0,892
chr17	40645030	40646082	REMC_BreastStem.35508	0	.	40645030	40646082	0	1	1052	0
chr17	40645075	40645396	CD4_Plagnol_resting.46033	0	.	40645075	40645396	0	1	321	0
chr17	40645346	40654915	HIT000098193	0	-	40645346	40654915	0	5	742,344,187,47,417	0,6634,8071,8671,9152
chr17	40645398	40654915	ENST00000498986	0	-	40645398	40654915	0	5	690,344,187,47,417	0,6582,8019,8619,9100
chr17	40646283	40647072	CD4_Plagnol_activated.45533	0	.	40646283	40647072	0	1	789	0
chr17	40646334	40648046	B_cells_Cheung.135752	0	.	40646334	40648046	0	1	1712	0
chr17	40646507	40647116	HeLa_polyA+_Chen.25286	0	.	40646507	40647116	0	1	609	0
chr17	40648384	40648829	HeLa_polyA+_Chen.25284	0	.	40648384	40648829	0	1	445	0
chr17	40649547	40650327	REMC_BreastStem.35510	0	.	40649547	40650327	0	1	780	0
chr17	40650469	40651561	HeLa_polyA+_Chen.25287	0	.	40650469	40651561	0	1	1092	0
chr17	40650573	40650885	CD4_Snyder.51884	0	.	40650573	40650885	0	1	312	0
chr17	40651985	40654859	melanoma_Garraway_short_term_cultures.47325	0	-	40651985	40654859	0	2	797,1621	0,1253
chr17	40684740	40686447	K562.31155	0	.	40684740	40686447	0	1	1707	0
chr17	40685306	40685937	REMC_MyoepithelialBreast.64593	0	.	40685306	40685937	0	1	631	0
chr17	40793861	40794285	A549_Myers.58496	0	.	40793861	40794285	0	1	424	0
chr17	40804788	40805267	A549_Myers.58498	0	.	40804788	40805267	0	1	479	0
chr17	40806768	40807201	A549_Myers.58500	0	.	40806768	40807201	0	1	433	0
chr17	40817077	40820447	REMC_LuminalBreast.69610	0	.	40817077	40820447	0	1	3370	0
chr17	40817416	40817898	A549_Myers.58505	0	.	40817416	40817898	0	1	482	0
chr17	40817449	40818303	B_Cells_Pritchard.2247887	0	.	40817449	40818303	0	1	854	0
chr17	40818580	40819457	REMC_BreastStem.35463	0	.	40818580	40819457	0	1	877	0
chr17	40822189	40822988	A549_Myers.58509	0	.	40822189	40822988	0	1	799	0
chr17	40824454	40825250	REMC_BreastStem.35465	0	.	40824454	40825250	0	1	796	0
chr17	40824843	40825147	A549_Myers.58510	0	.	40824843	40825147	0	1	304	0
chr17	41009947	41015930	REMC_LuminalBreast.69683	0	.	41009947	41015930	0	1	5983	0
chr17	41010113	41011423	B_cells_Cheung.135095	0	.	41010113	41011423	0	1	1310	0
chr17	41010139	41018762	H1_polyA+.80857	0	.	41010139	41018762	0	1	8623	0
chr17	41010139	41021647	H1_polyA+.80858	0	-	41010139	41021647	0	2	7731,206	0,11302
chr17	41010236	41010775	CD4_Plagnol_resting.43809	0	.	41010236	41010775	0	1	539	0
chr17	41010327	41010940	prostate_carcinoma.68812	0	.	41010327	41010940	0	1	613	0
chr17	41015243	41018555	H9_polyA+.31197	0	-	41015243	41018555	0	2	9,814	0,2498
chr17	41015425	41018800	B_cells_Cheung.135099	0	.	41015425	41018800	0	1	3375	0
chr17	41016033	41018129	REMC_LuminalBreast.69684	0	.	41016033	41018129	0	1	2096	0
chr17	41016423	41018555	H9_polyA+.31196	0	.	41016423	41018555	0	1	2132	0
chr17	41016697	41017975	H9_polyA-_Chen.9999	0	.	41016697	41017975	0	1	1278	0
chr17	41016866	41017839	REMC_MyoepithelialBreast.64664	0	.	41016866	41017839	0	1	973	0
chr17	41017265	41017683	MIP101.47770	0	.	41017265	41017683	0	1	418	0
chr17	41017323	41023660	CD4_Plagnol_resting.43826	0	-	41017323	41023660	0	2	649,194	0,6143
chr17	41017323	41018728	CD4_Plagnol_resting.43825	0	.	41017323	41018728	0	1	1405	0
chr17	41017350	41018063	CD4_Plagnol_activated.44877	0	.	41017350	41018063	0	1	713	0
chr17	41017367	41018200	A549_Myers.58550	0	.	41017367	41018200	0	1	833	0
chr17	41017372	41018135	brain_AmbionMAQC.30734	0	.	41017372	41018135	0	1	763	0
chr17	41017377	41017831	H1_rRNA-depleted_UCSD_REMC.60893	0	.	41017377	41017831	0	1	454	0
chr17	41017402	41018127	HeLa_polyA-_Chen.13762	0	.	41017402	41018127	0	1	725	0
chr17	41017469	41024990	B_Cells_Pritchard.2248501	0	+	41017469	41024990	0	4	977,300,291,87	0,990,3412,7434
chr17	41017471	41018055	HeLa_polyA+_Chen.25320	0	.	41017471	41018055	0	1	584	0
chr17	41017684	41018196	T47D_Burge_Thompson.20362	0	.	41017684	41018196	0	1	512	0
chr17	41017729	41018193	BT474_Burge_Thompson.23196	0	.	41017729	41018193	0	1	464	0
chr17	41017743	41018046	BT20_Thompson.15167	0	.	41017743	41018046	0	1	303	0
chr17	41018161	41018558	MIP101.47771	0	.	41018161	41018558	0	1	397	0
chr17	41018373	41020078	XR_038519	0	+	41018373	41020078	0	1	1705	0
chr17	41018890	41020589	XR_017515	0	+	41018890	41020589	0	1	1699	0
chr17	41019078	41020319	XR_037360	0	+	41019078	41020319	0	1	1241	0
chr17	41019595	41020058	pHIT000117250	0	+	41019595	41020058	0	1	463	0
chr17	41019683	41020170	B_cells_Cheung.135102	0	.	41019683	41020170	0	1	487	0
chr17	41019692	41020503	B_Cells_Pritchard.2248515	0	+	41019692	41020503	0	2	366,57	0,754
chr17	41681808	41682754	H1_polyA+.80991	0	.	41681808	41682754	0	1	946	0
chr17	41683065	41683557	H1_polyA+.80992	0	.	41683065	41683557	0	1	492	0
chr17	41697104	41697610	H1_polyA+.81003	0	.	41697104	41697610	0	1	506	0
chr17	41699641	41704401	H1_polyA+.81006	0	.	41699641	41704401	0	1	4760	0
chr17	41699784	41701367	B_cells_Cheung.135262	0	.	41699784	41701367	0	1	1583	0
chr17	41699855	41700640	A549_Myers.58643	0	.	41699855	41700640	0	1	785	0
chr17	41699855	41705073	A549_Myers.58642	0	-	41699855	41705073	0	2	579,31	0,5187
chr17	41700060	41700640	MCF7_Burge_Thompson.21605	0	.	41700060	41700640	0	1	580	0
chr17	41700143	41700621	T47D_Burge_Thompson.20387	0	.	41700143	41700621	0	1	478	0
chr17	41700146	41700820	prostate_carcinoma.68926	0	.	41700146	41700820	0	1	674	0
chr17	41700163	41700675	CD4_Plagnol_resting.43883	0	.	41700163	41700675	0	1	512	0
chr17	41700178	41701837	XR_078653	0	+	41700178	41701837	0	3	394,89,192	0,394,1467
chr17	41700178	41702322	XR_078656	0	+	41700178	41702322	0	5	340,40,92,593,54	0,351,391,1467,2090
chr17	41700178	41701837	XR_078837	0	+	41700178	41701837	0	3	391,92,192	0,391,1467
chr17	41700179	41700689	HIT000089615	0	+	41700179	41700689	0	1	510	0
chr17	41700899	41701989	CD4_Plagnol_resting.43884	0	.	41700899	41701989	0	1	1090	0
chr17	41706484	41707527	CD4_Plagnol_resting.43885	0	.	41706484	41707527	0	1	1043	0
chr17	42746674	42751669	MCF10A_Thompson.15143	0	.	42746674	42751669	0	1	4995	0
chr17	42746731	42751620	melanoma_Garraway_short_term_cultures.47492	0	.	42746731	42751620	0	1	4889	0
chr17	42750459	42751548	MeI_Garraway.12448	0	.	42750459	42751548	0	1	1089	0
chr17	43058462	43059305	CD4_Plagnol_resting.43972	0	.	43058462	43059305	0	1	843	0
chr17	43058633	43059363	CD4_Plagnol_activated.45207	0	.	43058633	43059363	0	1	730	0
chr17	43062015	43063363	prostate_carcinoma.69128	0	.	43062015	43063363	0	1	1348	0
chr17	43064560	43066094	B_cells_Cheung.136027	0	.	43064560	43066094	0	1	1534	0
chr17	43070728	43073962	REMC_MyoepithelialBreast.64873	0	.	43070728	43073962	0	1	3234	0
chr17	43070816	43074699	B_cells_Cheung.136031	0	.	43070816	43074699	0	1	3883	0
chr17	43070902	43074711	REMC_LuminalBreast.70037	0	.	43070902	43074711	0	1	3809	0
chr17	43071205	43073213	H1_polyA+.81534	0	.	43071205	43073213	0	1	2008	0
chr17	43072119	43073386	REMC_BreastStem.35605	0	.	43072119	43073386	0	1	1267	0
chr17	43072347	43073506	melanoma_Garraway_short_term_cultures.47544	0	.	43072347	43073506	0	1	1159	0
chr17	43072399	43073510	MIP101.47972	0	.	43072399	43073510	0	1	1111	0
chr17	43072639	43073389	prostate_carcinoma.69138	0	.	43072639	43073389	0	1	750	0
chr17	43073330	43074038	H1_polyA+.81535	0	.	43073330	43074038	0	1	708	0
chr17	43074173	43074703	H1_polyA+.81536	0	.	43074173	43074703	0	1	530	0
chr17	43074867	43077661	REMC_MyoepithelialBreast.64874	0	.	43074867	43077661	0	1	2794	0
chr17	43074876	43075859	H1_polyA+.81537	0	.	43074876	43075859	0	1	983	0
chr17	43074900	43079268	B_cells_Cheung.136032	0	.	43074900	43079268	0	1	4368	0
chr17	43075095	43079300	REMC_LuminalBreast.70038	0	.	43075095	43079300	0	1	4205	0
chr17	43075526	43076131	melanoma_Garraway_short_term_cultures.47545	0	.	43075526	43076131	0	1	605	0
chr17	43079393	43080510	CD4_Plagnol_resting.43961	0	.	43079393	43080510	0	1	1117	0
chr17	43120041	43121360	REMC_MyoepithelialBreast.64911	0	.	43120041	43121360	0	1	1319	0
chr17	43121354	43121658	B_cells_Cheung.135730	0	.	43121354	43121658	0	1	304	0
chr17	43122285	43123191	REMC_LuminalBreast.69966	0	.	43122285	43123191	0	1	906	0
chr17	43123454	43126112	REMC_MyoepithelialBreast.64913	0	.	43123454	43126112	0	1	2658	0
chr17	43124441	43126145	REMC_LuminalBreast.69967	0	.	43124441	43126145	0	1	1704	0
chr17	43496399	43497883	B_cells_Cheung.135896	0	.	43496399	43497883	0	1	1484	0
chr17	43497003	43497871	liver_polyA+.94344	0	.	43497003	43497871	0	1	868	0
chr17	43497606	43497923	H1_rRNA-depleted_UCSD_REMC.61124	0	.	43497606	43497923	0	1	317	0
chr17	43498961	43499841	HeLa_polyA+_Chen.25450	0	.	43498961	43499841	0	1	880	0
chr17	43558135	43558718	prostate_normal.40782	0	.	43558135	43558718	0	1	583	0
chr17	43563386	43564160	B_Cells_Pritchard.2255271	0	+	43563386	43564160	0	1	774	0
chr17	43868711	43869389	BT474_Burge_Thompson.23328	0	.	43868711	43869389	0	1	678	0
chr17	43868939	43869308	B_Cells_Pritchard.2254923	0	.	43868939	43869308	0	1	369	0
chr17	43915272	43915627	BT474_Burge_Thompson.23333	0	.	43915272	43915627	0	1	355	0
chr17	43915827	43916304	BT474_Burge_Thompson.23334	0	.	43915827	43916304	0	1	477	0
chr17	43924533	43925473	B_Cells_Pritchard.2255115	0	.	43924533	43925473	0	1	940	0
chr17	43924674	43925537	A549_Myers.58871	0	.	43924674	43925537	0	1	863	0
chr17	43959260	43960524	BT474_Burge_Thompson.23346	0	.	43959260	43960524	0	1	1264	0
chr17	43959323	43959783	ZR751_Thompson.17027	0	.	43959323	43959783	0	1	460	0
chr17	43978745	43979331	A549_Myers.58880	0	.	43978745	43979331	0	1	586	0
chr17	44066305	44066624	K562.31375	0	.	44066305	44066624	0	1	319	0
chr17	44066785	44070780	K562.31376	0	.	44066785	44070780	0	1	3995	0
chr17	44066814	44080046	B_Cells_Pritchard.2255461	0	-	44066814	44080046	0	2	2320,1096	0,12136
chr17	44066830	44079492	B_cells_Cheung.135926	0	-	44066830	44079492	0	2	2304,527	0,12135
chr17	44066844	44079381	melanoma_Garraway_short_term_cultures.47643	0	-	44066844	44079381	0	2	2290,416	0,12121
chr17	44066844	44070897	melanoma_Garraway_short_term_cultures.47644	0	.	44066844	44070897	0	1	4053	0
chr17	44067268	44079387	colon_Burge.26721	0	-	44067268	44079387	0	3	1866,84,422	0,4178,11697
chr17	44067990	44069237	colon_Burge.26722	0	.	44067990	44069237	0	1	1247	0
chr17	44068160	44079307	HeLa_polyA+_Chen.25482	0	-	44068160	44079307	0	2	974,342	0,10805
chr17	44068651	44079384	Rinn_00025231	0	-	44068651	44079384	0	2	483,420	0,10313
chr17	44068652	44079384	ENST00000433510	0	-	44068652	44079384	0	2	482,419	0,10313
chr17	44068659	44069162	CD4_Plagnol_resting.44115	0	.	44068659	44069162	0	1	503	0
chr17	44068659	44079017	CD4_Plagnol_resting.44116	0	-	44068659	44079017	0	2	475,52	0,10306
chr17	44068828	44069335	BT474_Burge_Thompson.23354	0	.	44068828	44069335	0	1	507	0
chr17	44068905	44071471	Rinn_00025233	0	-	44068905	44071471	0	3	229,127,26	0,322,2540
chr17	44075316	44079874	pHIT000090734	0	-	44075316	44079874	0	4	112,92,215,37	0,3396,3649,4521
chr17	44077660	44079413	A549_Myers.58921	0	.	44077660	44079413	0	1	1753	0
chr17	44078939	44079266	K562.31380	0	.	44078939	44079266	0	1	327	0
chr17	44079555	44080074	BT474_Burge_Thompson.23357	0	.	44079555	44080074	0	1	519	0
chr17	44085250	44120687	B_cells_Cheung.135928	0	+	44085250	44120687	0	3	85,272,830	0,30256,34607
chr17	44088209	44088639	B_Cells_Pritchard.2255497	0	.	44088209	44088639	0	1	430	0
chr17	44101268	44101890	BT474_Burge_Thompson.23362	0	.	44101268	44101890	0	1	622	0
chr17	44104017	44105472	melanoma_Garraway_short_term_cultures.47648	0	.	44104017	44105472	0	1	1455	0
chr17	44104044	44105098	B_cells_Cheung.135938	0	.	44104044	44105098	0	1	1054	0
chr17	44104363	44105366	BT474_Burge_Thompson.23365	0	.	44104363	44105366	0	1	1003	0
chr17	44116952	44117506	B_cells_Cheung.135951	0	.	44116952	44117506	0	1	554	0
chr17	44117156	44117806	BT474_Burge_Thompson.23371	0	.	44117156	44117806	0	1	650	0
chr17	44130569	44131760	B_cells_Cheung.135959	0	.	44130569	44131760	0	1	1191	0
chr17	44134622	44135050	BT474_Burge_Thompson.23379	0	.	44134622	44135050	0	1	428	0
chr17	44149023	44149634	prostate_normal.40809	0	.	44149023	44149634	0	1	611	0
chr17	44151417	44152029	H1_polyA+.81363	0	.	44151417	44152029	0	1	612	0
chr17	44151489	44151803	BT474_Burge_Thompson.23380	0	.	44151489	44151803	0	1	314	0
chr17	44155540	44157118	NR_024103	0	+	44155540	44157118	0	2	134,430	0,1148
chr17	44156052	44157112	ENST00000432056	0	+	44156052	44157112	0	2	80,424	0,636
chr17	44164812	44165496	prostate_normal.40819	0	.	44164812	44165496	0	1	684	0
chr17	44165144	44165736	BT474_Burge_Thompson.23385	0	.	44165144	44165736	0	1	592	0
chr17	44177010	44177400	prostate_normal.40824	0	.	44177010	44177400	0	1	390	0
chr17	44304096	44304629	skeletal_muscle_Burge.20843	0	.	44304096	44304629	0	1	533	0
chr17	44305618	44305999	testes_Burge.37377	0	.	44305618	44305999	0	1	381	0
chr17	44308912	44309526	REMC_MyoepithelialBreast.64992	0	.	44308912	44309526	0	1	614	0
chr17	44309414	44312886	REMC_BreastStem.35687	0	.	44309414	44312886	0	1	3472	0
chr17	44311068	44312084	A549_Myers.58976	0	.	44311068	44312084	0	1	1016	0
chr17	44311499	44312733	REMC_LuminalBreast.70044	0	.	44311499	44312733	0	1	1234	0
chr17	44314448	44316049	REMC_BreastStem.35689	0	.	44314448	44316049	0	1	1601	0
chr17	44314675	44315978	REMC_LuminalBreast.70046	0	.	44314675	44315978	0	1	1303	0
chr17	44314796	44315716	H1_polyA+.81384	0	.	44314796	44315716	0	1	920	0
chr17	44316466	44318682	REMC_BreastStem.35690	0	.	44316466	44318682	0	1	2216	0
chr17	44317330	44318359	REMC_MyoepithelialBreast.64997	0	.	44317330	44318359	0	1	1029	0
chr17	44331442	44332301	B_cells_Cheung.137083	0	.	44331442	44332301	0	1	859	0
chr17	44331443	44331773	CD4_Plagnol_activated.45363	0	.	44331443	44331773	0	1	330	0
chr17	44378246	44379038	REMC_LuminalBreast.70079	0	.	44378246	44379038	0	1	792	0
chr17	44378248	44379114	REMC_MyoepithelialBreast.65005	0	.	44378248	44379114	0	1	866	0
chr17	44379395	44380545	REMC_BreastStem.35701	0	.	44379395	44380545	0	1	1150	0
chr17	44383694	44385923	REMC_BreastStem.35704	0	.	44383694	44385923	0	1	2229	0
chr17	44404562	44404948	MCF7_Burge_Thompson.21733	0	.	44404562	44404948	0	1	386	0
chr17	44404564	44404908	ZR751_Thompson.17043	0	.	44404564	44404908	0	1	344	0
chr17	44404564	44404959	MDAMB468_Thompson.16882	0	.	44404564	44404959	0	1	395	0
chr17	44404654	44405347	A549_Myers.58991	0	.	44404654	44405347	0	1	693	0
chr17	44426949	44428136	K562.31408	0	.	44426949	44428136	0	1	1187	0
chr17	44427490	44428612	HepG2_Caltech_ENCODE.26416	0	.	44427490	44428612	0	1	1122	0
chr17	44496602	44497112	BT474_Burge_Thompson.23443	0	.	44496602	44497112	0	1	510	0
chr17	44524863	44525538	BT474_Burge_Thompson.23449	0	.	44524863	44525538	0	1	675	0
chr17	44554317	44554785	BT474_Burge_Thompson.23451	0	.	44554317	44554785	0	1	468	0
chr17	44623860	44624784	H1_polyA+.81430	0	.	44623860	44624784	0	1	924	0
chr17	44623886	44625175	HepG2_Caltech_ENCODE.25944	0	.	44623886	44625175	0	1	1289	0
chr17	44623901	44631645	B_Cells_Pritchard.2256741	0	+	44623901	44631645	0	5	2793,179,356,1512,441	0,3199,5145,5692,7303
chr17	44623942	44624672	REMC_MyoepithelialBreast.65007	0	.	44623942	44624672	0	1	730	0
chr17	44623949	44625223	B_cells_Cheung.136013	0	.	44623949	44625223	0	1	1274	0
chr17	44624156	44625567	A549_Myers.59015	0	.	44624156	44625567	0	1	1411	0
chr17	44624167	44625020	CD4_Snyder.52158	0	.	44624167	44625020	0	1	853	0
chr17	44624195	44624769	REMC_BreastStem.35707	0	.	44624195	44624769	0	1	574	0
chr17	44624209	44624803	prostate_carcinoma.69307	0	.	44624209	44624803	0	1	594	0
chr17	44624282	44624684	H1_rRNA-depleted_UCSD_REMC.61178	0	.	44624282	44624684	0	1	402	0
chr17	44624864	44625975	REMC_BreastStem.35708	0	.	44624864	44625975	0	1	1111	0
chr17	44670288	44670825	BT474_Burge_Thompson.23464	0	.	44670288	44670825	0	1	537	0
chr17	44671123	44671682	B_cells_Cheung.136040	0	.	44671123	44671682	0	1	559	0
chr17	44680422	44680731	A549_Myers.59027	0	.	44680422	44680731	0	1	309	0
chr17	44691286	44693079	REMC_MyoepithelialBreast.65009	0	.	44691286	44693079	0	1	1793	0
chr17	44692121	44692661	BT474_Burge_Thompson.23466	0	.	44692121	44692661	0	1	540	0
chr17	44692502	44693351	A549_Myers.59030	0	.	44692502	44693351	0	1	849	0
chr17	44797657	44799008	B_cells_Cheung.136112	0	.	44797657	44799008	0	1	1351	0
chr17	44797683	44798424	prostate_carcinoma.69353	0	.	44797683	44798424	0	1	741	0
chr17	44801209	44802679	H1_polyA+.81467	0	.	44801209	44802679	0	1	1470	0
chr17	44801235	44804624	B_cells_Cheung.136116	0	.	44801235	44804624	0	1	3389	0
chr17	44812313	44812948	H1_polyA+.81469	0	.	44812313	44812948	0	1	635	0
chr17	44822291	44823872	BT474_Burge_Thompson.23479	0	.	44822291	44823872	0	1	1581	0
chr17	44833989	44834693	B_Cells_Pritchard.2257761	0	-	44833989	44834693	0	1	704	0
chr17	44864311	44864775	BT474_Burge_Thompson.23490	0	.	44864311	44864775	0	1	464	0
chr17	44867397	44868510	BT474_Burge_Thompson.23491	0	.	44867397	44868510	0	1	1113	0
chr17	44872285	44872911	BT474_Burge_Thompson.23492	0	.	44872285	44872911	0	1	626	0
chr17	44886346	44916796	pHIT000117325	0	-	44886346	44916796	0	5	180,68,114,78,22	0,23619,24180,25534,30428
chr17	44891300	44891771	BT474_Burge_Thompson.23494	0	.	44891300	44891771	0	1	471	0
chr17	44900413	44900722	A549_Myers.59065	0	.	44900413	44900722	0	1	309	0
chr17	44902531	44902984	A549_Myers.59066	0	.	44902531	44902984	0	1	453	0
chr17	44905195	44916796	pHIT000029692	0	-	44905195	44916796	0	5	87,68,114,78,22	0,4770,5331,6685,11579
chr17	44911950	44918837	H1_polyA+.81479	0	-	44911950	44918837	0	2	1119,386	0,6501
chr17	44917541	44918035	H1_polyA+.81481	0	.	44917541	44918035	0	1	494	0
chr17	44918142	44918837	H1_polyA+.81480	0	.	44918142	44918837	0	1	695	0
chr17	44923135	44923777	prostate_normal.40857	0	.	44923135	44923777	0	1	642	0
chr17	44949061	44950960	REMC_LuminalBreast.70117	0	.	44949061	44950960	0	1	1899	0
chr17	44952201	44952734	BT474_Burge_Thompson.23497	0	.	44952201	44952734	0	1	533	0
chr17	44956181	44956623	A549_Myers.59085	0	.	44956181	44956623	0	1	442	0
chr17	44957057	44957683	BT474_Burge_Thompson.23499	0	.	44957057	44957683	0	1	626	0
chr17	44957086	44957538	MCF7_Burge_Thompson.21759	0	.	44957086	44957538	0	1	452	0
chr17	44960708	44961353	BT474_Burge_Thompson.23501	0	.	44960708	44961353	0	1	645	0
chr17	44977174	44977765	B_Cells_Pritchard.2257651	0	.	44977174	44977765	0	1	591	0
chr17	44977313	44979389	BT474_Burge_Thompson.23504	0	.	44977313	44979389	0	1	2076	0
chr17	44979882	44980223	BT474_Burge_Thompson.23505	0	.	44979882	44980223	0	1	341	0
chr17	44980345	44981177	BT474_Burge_Thompson.23506	0	.	44980345	44981177	0	1	832	0
chr17	44980454	44980943	B_Cells_Pritchard.2257663	0	.	44980454	44980943	0	1	489	0
chr17	44980666	44981477	A549_Myers.59086	0	.	44980666	44981477	0	1	811	0
chr17	44981734	44982735	BT474_Burge_Thompson.23507	0	.	44981734	44982735	0	1	1001	0
chr17	44984282	44985085	A549_Myers.59087	0	.	44984282	44985085	0	1	803	0
chr17	44986931	44987323	A549_Myers.59088	0	.	44986931	44987323	0	1	392	0
chr17	44987988	44988321	BT474_Burge_Thompson.23510	0	.	44987988	44988321	0	1	333	0
chr17	44988530	44989176	A549_Myers.59090	0	.	44988530	44989176	0	1	646	0
chr17	44988940	44989344	BT474_Burge_Thompson.23511	0	.	44988940	44989344	0	1	404	0
chr17	44999013	44999446	B_cells_Cheung.136153	0	.	44999013	44999446	0	1	433	0
chr17	44999490	45000138	B_Cells_Pritchard.2257863	0	.	44999490	45000138	0	1	648	0
chr17	44999551	45001196	B_cells_Cheung.136154	0	.	44999551	45001196	0	1	1645	0
chr17	44999630	45000005	A549_Myers.59091	0	.	44999630	45000005	0	1	375	0
chr17	44999673	45000152	BT474_Burge_Thompson.23513	0	.	44999673	45000152	0	1	479	0
chr17	45000113	45003439	A549_Myers.59092	0	-	45000113	45003439	0	3	705,51,40	0,1907,3286
chr17	45001916	45006502	B_cells_Cheung.136155	0	.	45001916	45006502	0	1	4586	0
chr17	45002405	45002820	A549_Myers.59093	0	.	45002405	45002820	0	1	415	0
chr17	45002965	45003388	A549_Myers.59094	0	.	45002965	45003388	0	1	423	0
chr17	45005877	45006634	prostate_carcinoma.69405	0	.	45005877	45006634	0	1	757	0
chr17	45020434	45021022	B_Cells_Pritchard.2257987	0	+	45020434	45021022	0	1	588	0
chr17	45020470	45021003	B_cells_Cheung.136160	0	.	45020470	45021003	0	1	533	0
chr17	45021224	45022372	B_cells_Cheung.136161	0	.	45021224	45022372	0	1	1148	0
chr17	45021319	45021891	CD4_Plagnol_activated.45234	0	.	45021319	45021891	0	1	572	0
chr17	45021413	45021896	prostate_carcinoma.69407	0	.	45021413	45021896	0	1	483	0
chr17	45021446	45021765	prostate_normal.40866	0	.	45021446	45021765	0	1	319	0
chr17	45021611	45022376	MIP101.48052	0	.	45021611	45022376	0	1	765	0
chr17	45121083	45121873	BT474_Burge_Thompson.23522	0	.	45121083	45121873	0	1	790	0
chr17	45121143	45121813	prostate_carcinoma.69401	0	.	45121143	45121813	0	1	670	0
chr17	45459545	45460720	A549_Myers.59191	0	.	45459545	45460720	0	1	1175	0
chr17	45460895	45461649	REMC_MyoepithelialBreast.65070	0	.	45460895	45461649	0	1	754	0
chr17	45469854	45470457	A549_Myers.59195	0	.	45469854	45470457	0	1	603	0
chr17	45477248	45477759	A549_Myers.59198	0	.	45477248	45477759	0	1	511	0
chr17	45482710	45488102	Rinn_00025236	0	-	45482710	45488102	0	3	2288,136,112	0,3144,5280
chr17	45482711	45488102	ENST00000499842	0	-	45482711	45488102	0	3	2287,135,111	0,3144,5280
chr17	45482859	45483226	A549_Myers.59201	0	.	45482859	45483226	0	1	367	0
chr17	45483847	45484693	prostate_normal.40907	0	.	45483847	45484693	0	1	846	0
chr17	45484061	45484834	MDAMB231_Thompson.15672	0	.	45484061	45484834	0	1	773	0
chr17	45484425	45484759	A549_Myers.59203	0	.	45484425	45484759	0	1	334	0
chr17	45485660	45485962	HME_Burge.28750	0	.	45485660	45485962	0	1	302	0
chr17	45613755	45614912	REMC_BreastStem.35762	0	.	45613755	45614912	0	1	1157	0
chr17	45614365	45614774	A549_Myers.59234	0	.	45614365	45614774	0	1	409	0
chr17	45642675	45643012	A549_Myers.59238	0	.	45642675	45643012	0	1	337	0
chr17	45643228	45643621	A549_Myers.59239	0	.	45643228	45643621	0	1	393	0
chr17	45688249	45688813	A549_Myers.59241	0	.	45688249	45688813	0	1	564	0
chr17	45689389	45689716	A549_Myers.59242	0	.	45689389	45689716	0	1	327	0
chr17	45693121	45693606	A549_Myers.59245	0	.	45693121	45693606	0	1	485	0
chr17	45693870	45694211	A549_Myers.59246	0	.	45693870	45694211	0	1	341	0
chr17	45693897	45694363	BT474_Burge_Thompson.23629	0	.	45693897	45694363	0	1	466	0
chr17	45696614	45697956	A549_Myers.59248	0	.	45696614	45697956	0	1	1342	0
chr17	45698205	45698626	A549_Myers.59243	0	.	45698205	45698626	0	1	421	0
chr17	45713935	45720215	Rinn_00025237	0	-	45713935	45720215	0	4	301,85,251,117	0,891,2381,6163
chr17	45713985	45717213	Rinn_00025694	0	-	45713985	45717213	0	2	251,2387	0,841
chr17	45714199	45717353	HeLa_polyA+_Chen.25564	0	-	45714199	45717353	0	2	37,2526	0,628
chr17	45715237	45717476	HIT000009713	0	+	45715237	45717476	0	1	2239	0
chr17	45715259	45718007	prostate_carcinoma.69491	0	.	45715259	45718007	0	1	2748	0
chr17	45715259	45718007	prostate_carcinoma.69490	0	-	45715259	45718007	0	2	1606,586	0,2162
chr17	45715266	45716985	H1_polyA+.81586	0	.	45715266	45716985	0	1	1719	0
chr17	45715301	45717016	prostate_normal.40929	0	.	45715301	45717016	0	1	1715	0
chr17	45715318	45716382	MDAMB231_Thompson.15694	0	.	45715318	45716382	0	1	1064	0
chr17	45715333	45715706	B_cells_Cheung.136350	0	.	45715333	45715706	0	1	373	0
chr17	45715346	45718490	BT474_Burge_Thompson.23630	0	.	45715346	45718490	0	1	3144	0
chr17	45715727	45716310	A549_Myers.59262	0	.	45715727	45716310	0	1	583	0
chr17	45716166	45716959	K562.31489	0	.	45716166	45716959	0	1	793	0
chr17	45717676	45718326	HeLa_polyA+_Chen.25563	0	.	45717676	45718326	0	1	650	0
chr17	45717681	45718023	A549_Myers.59265	0	.	45717681	45718023	0	1	342	0
chr17	45735114	45735616	BT474_Burge_Thompson.23632	0	.	45735114	45735616	0	1	502	0
chr17	45736660	45737588	REMC_MyoepithelialBreast.65090	0	.	45736660	45737588	0	1	928	0
chr17	45757315	45758070	REMC_MyoepithelialBreast.65091	0	.	45757315	45758070	0	1	755	0
chr17	45759850	45761210	REMC_BreastStem.35769	0	.	45759850	45761210	0	1	1360	0
chr17	45760239	45762674	REMC_LuminalBreast.70170	0	.	45760239	45762674	0	1	2435	0
chr17	45761336	45761686	B_cells_Cheung.136358	0	.	45761336	45761686	0	1	350	0
chr17	45763265	45765063	REMC_MyoepithelialBreast.65092	0	.	45763265	45765063	0	1	1798	0
chr17	45764588	45766132	REMC_LuminalBreast.70172	0	.	45764588	45766132	0	1	1544	0
chr17	45772420	45772907	REMC_LuminalBreast.70176	0	.	45772420	45772907	0	1	487	0
chr17	45772533	45773666	REMC_MyoepithelialBreast.65096	0	.	45772533	45773666	0	1	1133	0
chr17	45772965	45776211	REMC_LuminalBreast.70310	0	.	45772965	45776211	0	1	3246	0
chr17	45795886	45798211	prostate_normal.40936	0	.	45795886	45798211	0	1	2325	0
chr17	45795985	45796677	T47D_Burge_Thompson.20693	0	.	45795985	45796677	0	1	692	0
chr17	45797218	45797829	MCF7_Burge_Thompson.21821	0	.	45797218	45797829	0	1	611	0
chr17	45797491	45798793	K562.31491	0	.	45797491	45798793	0	1	1302	0
chr17	45798234	45799046	MeWo_Garraway.25425	0	.	45798234	45799046	0	1	812	0
chr17	45908730	45909038	liver_polyA+.94556	0	.	45908730	45909038	0	1	308	0
chr17	45908763	45909664	REMC_LuminalBreast.70212	0	.	45908763	45909664	0	1	901	0
chr17	45908774	45909285	brain_AmbionMAQC.31023	0	.	45908774	45909285	0	1	511	0
chr17	45919626	45922620	prostate_carcinoma.69511	0	.	45919626	45922620	0	1	2994	0
chr17	45919856	45921718	prostate_normal.40947	0	.	45919856	45921718	0	1	1862	0
chr17	45920186	45921186	H1_polyA+.81617	0	.	45920186	45921186	0	1	1000	0
chr17	45920339	45921402	REMC_MyoepithelialBreast.65110	0	.	45920339	45921402	0	1	1063	0
chr17	45931584	45932373	REMC_MyoepithelialBreast.65114	0	.	45931584	45932373	0	1	789	0
chr17	45934027	45935755	REMC_MyoepithelialBreast.65109	0	.	45934027	45935755	0	1	1728	0
chr17	45934086	45935806	prostate_carcinoma.69512	0	.	45934086	45935806	0	1	1720	0
chr17	45934304	45935784	prostate_normal.40948	0	.	45934304	45935784	0	1	1480	0
chr17	45935021	45936562	REMC_LuminalBreast.70217	0	.	45935021	45936562	0	1	1541	0
chr17	45988963	45991810	ENST00000505495	0	-	45988963	45991810	0	2	855,146	0,2701
chr17	45989533	45991770	ENST00000508920	0	-	45989533	45991770	0	2	285,83	0,2154
chr17	46063352	46064418	A549_Myers.94984	0	.	46063352	46064418	0	1	1066	0
chr17	46064471	46064816	A549_Myers.94985	0	.	46064471	46064816	0	1	345	0
chr17	46196295	46197307	REMC_LuminalBreast.70255	0	.	46196295	46197307	0	1	1012	0
chr17	46213323	46213877	BT474_Burge_Thompson.23858	0	.	46213323	46213877	0	1	554	0
chr17	46213582	46221281	pHIT000029823	0	-	46213582	46221281	0	2	299,49	0,7650
chr17	46251330	46252239	BT474_Burge_Thompson.23864	0	.	46251330	46252239	0	1	909	0
chr17	46251397	46252293	B_Cells_Pritchard.2261135	0	.	46251397	46252293	0	1	896	0
chr17	46263527	46264411	B_Cells_Pritchard.2261175	0	.	46263527	46264411	0	1	884	0
chr17	46264657	46265999	BT474_Burge_Thompson.23867	0	.	46264657	46265999	0	1	1342	0
chr17	46318606	46319599	REMC_MyoepithelialBreast.65138	0	.	46318606	46319599	0	1	993	0
chr17	46321625	46326196	HepG2_Caltech_ENCODE.26050	0	.	46321625	46326196	0	1	4571	0
chr17	46323543	46324847	prostate_carcinoma.69586	0	.	46323543	46324847	0	1	1304	0
chr17	46324278	46324857	REMC_BreastStem.35823	0	.	46324278	46324857	0	1	579	0
chr17	46341470	46341970	brain_AmbionMAQC.31059	0	.	46341470	46341970	0	1	500	0
chr17	46341498	46344279	HepG2_Caltech_ENCODE.26052	0	.	46341498	46344279	0	1	2781	0
chr17	46341524	46343472	prostate_normal.41003	0	.	46341524	46343472	0	1	1948	0
chr17	46341524	46342455	B_Cells_Pritchard.2261467	0	.	46341524	46342455	0	1	931	0
chr17	46343769	46350104	REMC_LuminalBreast.70260	0	+	46343769	46350104	0	2	371,595	0,5740
chr17	46344250	46344566	kidney_Gilad.61309	0	.	46344250	46344566	0	1	316	0
chr17	46345131	46346175	HepG2_Caltech_ENCODE.26053	0	.	46345131	46346175	0	1	1044	0
chr17	46345140	46345941	REMC_LuminalBreast.70262	0	.	46345140	46345941	0	1	801	0
chr17	46345358	46345700	A549_Myers.59393	0	.	46345358	46345700	0	1	342	0
chr17	46346941	46373779	prostate_carcinoma.69588	0	-	46346941	46373779	0	7	944,54,32,849,211,1546,372	0,6059,6920,7427,22489,24147,26466
chr17	46347150	46347976	prostate_normal.41007	0	.	46347150	46347976	0	1	826	0
chr17	46347178	46347930	ZR751_Thompson.17124	0	.	46347178	46347930	0	1	752	0
chr17	46347431	46347748	kidney_Gilad.61314	0	.	46347431	46347748	0	1	317	0
chr17	46348193	46349559	REMC_BreastStem.35828	0	.	46348193	46349559	0	1	1366	0
chr17	46348196	46352721	prostate_carcinoma.69587	0	.	46348196	46352721	0	1	4525	0
chr17	46348201	46349594	H1_polyA+.81664	0	.	46348201	46349594	0	1	1393	0
chr17	46348236	46352698	prostate_normal.41009	0	+	46348236	46352698	0	2	2320,1971	0,2491
chr17	46348236	46352698	prostate_normal.41008	0	.	46348236	46352698	0	1	4462	0
chr17	46348451	46352715	liver_polyA+.94582	0	+	46348451	46352715	0	2	2105,1988	0,2276
chr17	46349307	46350028	BT474_Burge_Thompson.23882	0	.	46349307	46350028	0	1	721	0
chr17	46349365	46352684	B_Cells_Pritchard.2261495	0	.	46349365	46352684	0	1	3319	0
chr17	46349528	46350231	brain_AmbionMAQC.31064	0	.	46349528	46350231	0	1	703	0
chr17	46349562	46350478	REMC_MyoepithelialBreast.65142	0	.	46349562	46350478	0	1	916	0
chr17	46349785	46350097	kidney_Gilad.61319	0	.	46349785	46350097	0	1	312	0
chr17	46349929	46352780	H1_polyA+.81665	0	.	46349929	46352780	0	1	2851	0
chr17	46350071	46350527	HepG2_Caltech_ENCODE.26054	0	.	46350071	46350527	0	1	456	0
chr17	46350081	46350420	ZR751_Thompson.17125	0	.	46350081	46350420	0	1	339	0
chr17	46350117	46350731	MCF7_Burge_Thompson.21859	0	.	46350117	46350731	0	1	614	0
chr17	46350361	46351185	A549_Myers.59397	0	.	46350361	46351185	0	1	824	0
chr17	46350403	46351055	kidney_Gilad.61320	0	+	46350403	46351055	0	2	153,328	0,324
chr17	46350844	46351160	B_cells_Cheung.136538	0	.	46350844	46351160	0	1	316	0
chr17	46351366	46352832	REMC_LuminalBreast.70264	0	.	46351366	46352832	0	1	1466	0
chr17	46351995	46352488	A549_Myers.59399	0	.	46351995	46352488	0	1	493	0
chr17	46352158	46352474	B_cells_Cheung.136540	0	.	46352158	46352474	0	1	316	0
chr17	46352966	46353353	HepG2_Caltech_ENCODE.26055	0	.	46352966	46353353	0	1	387	0
chr17	46352999	46353931	B_Cells_Pritchard.2261497	0	.	46352999	46353931	0	1	932	0
chr17	46353104	46353597	B_cells_Cheung.136542	0	.	46353104	46353597	0	1	493	0
chr17	46354098	46356152	REMC_MyoepithelialBreast.65144	0	.	46354098	46356152	0	1	2054	0
chr17	46354100	46354820	HepG2_Caltech_ENCODE.26056	0	.	46354100	46354820	0	1	720	0
chr17	46354104	46362069	B_Cells_Pritchard.2261499	0	-	46354104	46362069	0	2	681,30	0,7935
chr17	46354355	46356357	H1_polyA+.81668	0	.	46354355	46356357	0	1	2002	0
chr17	46354922	46357816	REMC_BreastStem.35831	0	.	46354922	46357816	0	1	2894	0
chr17	46355306	46355827	B_cells_Cheung.136537	0	.	46355306	46355827	0	1	521	0
chr17	46355440	46358371	REMC_LuminalBreast.70266	0	.	46355440	46358371	0	1	2931	0
chr17	46355471	46355847	B_Cells_Pritchard.2261507	0	-	46355471	46355847	0	1	376	0
chr17	46359630	46362878	H1_polyA+.81670	0	.	46359630	46362878	0	1	3248	0
chr17	46360351	46361975	REMC_BreastStem.35833	0	.	46360351	46361975	0	1	1624	0
chr17	46361357	46363050	REMC_MyoepithelialBreast.65148	0	.	46361357	46363050	0	1	1693	0
chr17	46362028	46362949	REMC_BreastStem.35834	0	.	46362028	46362949	0	1	921	0
chr17	46364130	46365318	REMC_BreastStem.35836	0	.	46364130	46365318	0	1	1188	0
chr17	46364726	46365416	A549_Myers.59404	0	.	46364726	46365416	0	1	690	0
chr17	46366504	46367401	H1_polyA+.81671	0	.	46366504	46367401	0	1	897	0
chr17	46366781	46367299	A549_Myers.59405	0	.	46366781	46367299	0	1	518	0
chr17	46366813	46367691	REMC_LuminalBreast.70269	0	.	46366813	46367691	0	1	878	0
chr17	46368123	46370299	REMC_LuminalBreast.70270	0	.	46368123	46370299	0	1	2176	0
chr17	46369187	46370132	prostate_normal.41013	0	.	46369187	46370132	0	1	945	0
chr17	46369359	46370285	REMC_BreastStem.35840	0	.	46369359	46370285	0	1	926	0
chr17	46369440	46370284	H1_polyA+.81672	0	.	46369440	46370284	0	1	844	0
chr17	46369590	46370261	B_cells_Cheung.136545	0	.	46369590	46370261	0	1	671	0
chr17	46369617	46370005	K562.31515	0	.	46369617	46370005	0	1	388	0
chr17	46369660	46370147	B_Cells_Pritchard.2261577	0	.	46369660	46370147	0	1	487	0
chr17	46372017	46372807	A549_Myers.59408	0	.	46372017	46372807	0	1	790	0
chr17	46373984	46377611	REMC_BreastStem.35845	0	.	46373984	46377611	0	1	3627	0
chr17	46374639	46376970	HepG2_Caltech_ENCODE.26060	0	.	46374639	46376970	0	1	2331	0
chr17	46375582	46376994	prostate_normal.41021	0	.	46375582	46376994	0	1	1412	0
chr17	46375764	46376937	BT474_Burge_Thompson.23885	0	.	46375764	46376937	0	1	1173	0
chr17	46375997	46376792	ZR751_Thompson.17126	0	.	46375997	46376792	0	1	795	0
chr17	46376568	46377075	CD4_Snyder.52358	0	.	46376568	46377075	0	1	507	0
chr17	46376767	46378058	REMC_LuminalBreast.70273	0	.	46376767	46378058	0	1	1291	0
chr17	46377120	46377574	A549_Myers.59411	0	.	46377120	46377574	0	1	454	0
chr17	46378224	46381331	REMC_LuminalBreast.70274	0	.	46378224	46381331	0	1	3107	0
chr17	46378228	46382034	REMC_BreastStem.35847	0	.	46378228	46382034	0	1	3806	0
chr17	46378330	46378790	A549_Myers.59412	0	.	46378330	46378790	0	1	460	0
chr17	46378842	46379614	B_Cells_Pritchard.2261615	0	.	46378842	46379614	0	1	772	0
chr17	46378871	46379191	A549_Myers.59413	0	.	46378871	46379191	0	1	320	0
chr17	46379330	46379895	A549_Myers.59414	0	.	46379330	46379895	0	1	565	0
chr17	46381443	46382055	B_cells_Cheung.136549	0	.	46381443	46382055	0	1	612	0
chr17	46385172	46385903	REMC_LuminalBreast.70276	0	.	46385172	46385903	0	1	731	0
chr17	46385189	46385679	B_Cells_Pritchard.2261637	0	.	46385189	46385679	0	1	490	0
chr17	46385199	46388465	REMC_BreastStem.35849	0	.	46385199	46388465	0	1	3266	0
chr17	46385316	46385991	B_cells_Cheung.136551	0	.	46385316	46385991	0	1	675	0
chr17	46387009	46387624	pHIT000117383	0	+	46387009	46387624	0	1	615	0
chr17	46605197	46606768	REMC_MyoepithelialBreast.65162	0	.	46605197	46606768	0	1	1571	0
chr17	46605425	46608564	B_cells_Cheung.136624	0	.	46605425	46608564	0	1	3139	0
chr17	46605437	46606332	melanoma_Garraway_short_term_cultures.47886	0	.	46605437	46606332	0	1	895	0
chr17	46605493	46606798	H1_polyA+.81874	0	.	46605493	46606798	0	1	1305	0
chr17	46744953	46767526	HIT000095597	0	-	46744953	46767526	0	6	191,91,100,129,407,821	0,8992,11039,20406,21118,21752
chr17	46744968	46767525	ENST00000514726	0	-	46744968	46767525	0	6	176,91,100,129,407,820	0,8977,11024,20391,21103,21737
chr17	46768956	46770222	XR_078839	0	+	46768956	46770222	0	1	1266	0
chr17	46769073	46774931	Rinn_00025124	0	+	46769073	46774931	0	3	1207,119,1322	0,2892,4536
chr17	46769074	46774931	HIT000044705	0	+	46769074	46774931	0	3	1206,118,1321	0,2892,4536
chr17	46769074	46774931	ENST00000441895	0	+	46769074	46774931	0	3	1206,118,1321	0,2892,4536
chr17	46769358	46770222	HIT000390961	0	+	46769358	46770222	0	1	864	0
chr17	46775225	46776302	BT474_Burge_Thompson.23901	0	.	46775225	46776302	0	1	1077	0
chr17	46775295	46776515	B_Cells_Pritchard.2262295	0	.	46775295	46776515	0	1	1220	0
chr17	46777847	46778489	BT474_Burge_Thompson.23902	0	.	46777847	46778489	0	1	642	0
chr17	46802054	46802512	B_cells_Cheung.136640	0	.	46802054	46802512	0	1	458	0
chr17	46855184	46855519	A549_Myers.59462	0	.	46855184	46855519	0	1	335	0
chr17	46855617	46856235	A549_Myers.59463	0	.	46855617	46856235	0	1	618	0
chr17	46871934	46873198	CD4_Plagnol_resting.44340	0	.	46871934	46873198	0	1	1264	0
chr17	46872011	46878162	HIT000046700	0	+	46872011	46878162	0	2	777,2069	0,4082
chr17	46872012	46878162	ENST00000514147	0	+	46872012	46878162	0	2	776,2069	0,4081
chr17	46875953	46876833	CD4_Plagnol_resting.44341	0	.	46875953	46876833	0	1	880	0
chr17	48235885	48238219	melanoma_Garraway_short_term_cultures.47935	0	.	48235885	48238219	0	1	2334	0
chr17	48541050	48543330	H1_polyA+.81708	0	.	48541050	48543330	0	1	2280	0
chr17	48728261	48728926	H1_polyA+.81714	0	.	48728261	48728926	0	1	665	0
chr17	49364002	49366106	BT474_Burge_Thompson.23943	0	.	49364002	49366106	0	1	2104	0
chr17	49384959	49385469	B_Cells_Pritchard.2267147	0	.	49384959	49385469	0	1	510	0
chr17	49456470	49464871	H1_polyA+.81727	0	.	49456470	49464871	0	1	8401	0
chr17	49468704	49793555	H1_polyA+.81728	0	-	49468704	49793555	0	5	546,27,76,246,63	0,23437,26692,30232,324788
chr17	49684069	49686433	H1_polyA+.81756	0	.	49684069	49686433	0	1	2364	0
chr17	49685927	49686240	H9_polyA+.31589	0	.	49685927	49686240	0	1	313	0
chr17	49788985	49790322	H1_polyA+.81807	0	.	49788985	49790322	0	1	1337	0
chr17	50269446	50269796	A549_Myers.59477	0	.	50269446	50269796	0	1	350	0
chr17	50608124	50608840	B_cells_Cheung.136710	0	.	50608124	50608840	0	1	716	0
chr17	50608148	50609139	B_Cells_Pritchard.2269253	0	.	50608148	50609139	0	1	991	0
chr17	50608164	50608991	prostate_carcinoma.69650	0	.	50608164	50608991	0	1	827	0
chr17	50633967	50666713	pHIT000117400	0	+	50633967	50666713	0	3	105,104,140	0,11475,32606
chr17	50656940	50658300	H1_polyA+.81842	0	.	50656940	50658300	0	1	1360	0
chr17	50657412	50657952	prostate_carcinoma.69653	0	.	50657412	50657952	0	1	540	0
chr17	50658117	50658756	prostate_carcinoma.69654	0	.	50658117	50658756	0	1	639	0
chr17	50658133	50658527	B_Cells_Pritchard.2269459	0	.	50658133	50658527	0	1	394	0
chr17	50993255	50993776	MIP101.48267	0	.	50993255	50993776	0	1	521	0
chr17	50993350	50993784	B_cells_Cheung.136738	0	.	50993350	50993784	0	1	434	0
chr17	50993352	50993777	melanoma_Garraway_short_term_cultures.47957	0	.	50993352	50993777	0	1	425	0
chr17	50993356	50993784	brain_AmbionMAQC.31109	0	.	50993356	50993784	0	1	428	0
chr17	50993358	50993780	MeWo_Garraway.25423	0	.	50993358	50993780	0	1	422	0
chr17	50993362	50993775	CD4_Plagnol_resting.44369	0	.	50993362	50993775	0	1	413	0
chr17	50993364	50993778	CD4_Plagnol_activated.45416	0	.	50993364	50993778	0	1	414	0
chr17	50993371	50993781	MCF10A_Thompson.15201	0	.	50993371	50993781	0	1	410	0
chr17	50993375	50993780	MeI_Garraway.12572	0	.	50993375	50993780	0	1	405	0
chr17	50993375	50993771	REMC_LuminalBreast.70317	0	.	50993375	50993771	0	1	396	0
chr17	50993394	50993739	pHIT000117405	0	-	50993394	50993739	0	1	345	0
chr17	50993448	50993784	REMC_MyoepithelialBreast.65218	0	.	50993448	50993784	0	1	336	0
chr17	50993449	50993785	HeLa_polyA+_Chen.25650	0	.	50993449	50993785	0	1	336	0
chr17	50993461	50993787	H9_polyA-_Chen.10104	0	.	50993461	50993787	0	1	326	0
chr17	50995261	50996033	prostate_carcinoma.69663	0	.	50995261	50996033	0	1	772	0
chr17	51043055	51043436	BT474_Burge_Thompson.23986	0	.	51043055	51043436	0	1	381	0
chr17	51233377	51233712	B_Cells_Pritchard.2271155	0	.	51233377	51233712	0	1	335	0
chr17	51234503	51235371	REMC_LuminalBreast.70349	0	.	51234503	51235371	0	1	868	0
chr17	51342719	51343578	BT474_Burge_Thompson.23990	0	.	51342719	51343578	0	1	859	0
chr17	51346055	51346401	A549_Myers.59529	0	.	51346055	51346401	0	1	346	0
chr17	51945753	51949011	T47D_Burge_Thompson.20708	0	.	51945753	51949011	0	1	3258	0
chr17	51990215	51990576	A549_Myers.59531	0	.	51990215	51990576	0	1	361	0
chr17	52104372	52105183	BT474_Burge_Thompson.23993	0	.	52104372	52105183	0	1	811	0
chr17	52187365	52187792	B_Cells_Pritchard.2273351	0	.	52187365	52187792	0	1	427	0
chr17	52212736	52213148	A549_Myers.59539	0	.	52212736	52213148	0	1	412	0
chr17	52308079	52308651	REMC_LuminalBreast.70357	0	.	52308079	52308651	0	1	572	0
chr17	52308098	52310424	REMC_MyoepithelialBreast.65242	0	.	52308098	52310424	0	1	2326	0
chr17	52308106	52310851	REMC_BreastStem.35920	0	.	52308106	52310851	0	1	2745	0
chr17	52308694	52310411	B_Cells_Pritchard.2273527	0	.	52308694	52310411	0	1	1717	0
chr17	52308721	52310452	REMC_LuminalBreast.70358	0	.	52308721	52310452	0	1	1731	0
chr17	52309691	52310213	B_cells_Cheung.136808	0	.	52309691	52310213	0	1	522	0
chr17	52310524	52311377	REMC_MyoepithelialBreast.65243	0	.	52310524	52311377	0	1	853	0
chr17	52310574	52311068	B_Cells_Pritchard.2273529	0	.	52310574	52311068	0	1	494	0
chr17	52311679	52312165	REMC_LuminalBreast.70361	0	.	52311679	52312165	0	1	486	0
chr17	52311694	52312117	B_cells_Cheung.136811	0	.	52311694	52312117	0	1	423	0
chr17	52311719	52313328	REMC_MyoepithelialBreast.65244	0	.	52311719	52313328	0	1	1609	0
chr17	52311735	52312225	B_Cells_Pritchard.2273533	0	.	52311735	52312225	0	1	490	0
chr17	52312216	52313353	REMC_LuminalBreast.70362	0	.	52312216	52313353	0	1	1137	0
chr17	52354417	52355549	REMC_LuminalBreast.70386	0	.	52354417	52355549	0	1	1132	0
chr17	52356052	52356808	REMC_BreastStem.35901	0	.	52356052	52356808	0	1	756	0
chr17	52482166	52483629	prostate_carcinoma.69752	0	.	52482166	52483629	0	1	1463	0
chr17	52503416	52503986	B_cells_Cheung.136902	0	.	52503416	52503986	0	1	570	0
chr17	52503881	52517367	Rinn_00025703	0	-	52503881	52517367	0	3	977,125,169	0,7764,13317
chr17	52504314	52517367	T47D_Burge_Thompson.20727	0	-	52504314	52517367	0	3	544,179,168	0,7277,12885
chr17	52504404	52517466	B_cells_Cheung.136910	0	-	52504404	52517466	0	4	454,342,89,267	0,7024,12559,12795
chr17	52510475	52512967	B_Cells_Pritchard.2274073	0	-	52510475	52512967	0	4	530,112,85,12	0,665,803,2480
chr17	52510661	52511590	HepG2_Caltech_ENCODE.26139	0	.	52510661	52511590	0	1	929	0
chr17	52511454	52517343	MDAMB468_Thompson.17010	0	-	52511454	52517343	0	2	316,144	0,5745
chr17	52511560	52517358	ZR751_Thompson.17180	0	-	52511560	52517358	0	2	210,159	0,5639
chr17	52511598	52517433	Rinn_00025704	0	-	52511598	52517433	0	2	172,235	0,5600
chr17	52511651	52517383	K562.31637	0	-	52511651	52517383	0	2	119,184	0,5548
chr17	52514816	52515179	melanoma_Garraway_short_term_cultures.47993	0	.	52514816	52515179	0	1	363	0
chr17	52555252	52556728	prostate_carcinoma.70087	0	.	52555252	52556728	0	1	1476	0
chr17	52555392	52557214	HepG2_Caltech_ENCODE.26147	0	.	52555392	52557214	0	1	1822	0
chr17	52555406	52556743	REMC_MyoepithelialBreast.65270	0	.	52555406	52556743	0	1	1337	0
chr17	52557282	52558604	CD4_Plagnol_activated.45464	0	.	52557282	52558604	0	1	1322	0
chr17	52557384	52558706	REMC_MyoepithelialBreast.65272	0	.	52557384	52558706	0	1	1322	0
chr17	52557899	52558822	HepG2_Caltech_ENCODE.26148	0	.	52557899	52558822	0	1	923	0
chr17	52558353	52558663	H1_rRNA-depleted_UCSD_REMC.61580	0	.	52558353	52558663	0	1	310	0
chr17	52570462	52570838	A549_Myers.59602	0	.	52570462	52570838	0	1	376	0
chr17	52646821	52647784	REMC_MyoepithelialBreast.65277	0	.	52646821	52647784	0	1	963	0
chr17	52684668	52686626	MIP101.48305	0	.	52684668	52686626	0	1	1958	0
chr17	52685796	52686386	MeWo_Garraway.25532	0	.	52685796	52686386	0	1	590	0
chr17	53126395	53128121	B_cells_Cheung.136929	0	.	53126395	53128121	0	1	1726	0
chr17	53127360	53128075	B_Cells_Pritchard.2275111	0	.	53127360	53128075	0	1	715	0
chr17	53129132	53130114	melanoma_Garraway_short_term_cultures.48055	0	.	53129132	53130114	0	1	982	0
chr17	53129145	53131249	B_cells_Cheung.136931	0	.	53129145	53131249	0	1	2104	0
chr17	53129222	53130093	B_Cells_Pritchard.2275117	0	.	53129222	53130093	0	1	871	0
chr17	53129440	53129925	A549_Myers.59663	0	.	53129440	53129925	0	1	485	0
chr17	53129457	53129894	prostate_normal.41207	0	.	53129457	53129894	0	1	437	0
chr17	53130233	53130867	B_Cells_Pritchard.2275119	0	.	53130233	53130867	0	1	634	0
chr17	53189392	53190262	pHIT000029860	0	+	53189392	53190262	0	3	52,87,179	0,425,691
chr17	53206373	53207940	prostate_normal.41211	0	.	53206373	53207940	0	1	1567	0
chr17	53206950	53207286	pHIT000029861	0	-	53206950	53207286	0	1	336	0
chr17	53215642	53216096	A549_Myers.59668	0	.	53215642	53216096	0	1	454	0
chr17	53268555	53270150	CD4_Plagnol_activated.45490	0	.	53268555	53270150	0	1	1595	0
chr17	53269159	53269998	MeWo_Garraway.25471	0	.	53269159	53269998	0	1	839	0
chr17	53269310	53270051	melanoma_Garraway_short_term_cultures.48060	0	.	53269310	53270051	0	1	741	0
chr17	53269318	53269650	A549_Myers.59675	0	.	53269318	53269650	0	1	332	0
chr17	53269318	53270037	liver_polyA+.94956	0	.	53269318	53270037	0	1	719	0
chr17	53269330	53270036	MDAMB468_Thompson.17021	0	.	53269330	53270036	0	1	706	0
chr17	53269337	53269961	MDAMB231_Thompson.15773	0	.	53269337	53269961	0	1	624	0
chr17	53289219	53292626	REMC_LuminalBreast.70470	0	.	53289219	53292626	0	1	3407	0
chr17	53292749	53293685	REMC_MyoepithelialBreast.65310	0	.	53292749	53293685	0	1	936	0
chr17	53391364	53392021	REMC_MyoepithelialBreast.65345	0	.	53391364	53392021	0	1	657	0
chr17	53391367	53391675	A549_Myers.59724	0	.	53391367	53391675	0	1	308	0
chr17	53421699	53422207	lymph_node_Burge.35546	0	.	53421699	53422207	0	1	508	0
chr17	53440864	53442123	B_cells_Cheung.137014	0	.	53440864	53442123	0	1	1259	0
chr17	53440884	53441874	MCF7_Burge_Thompson.21970	0	.	53440884	53441874	0	1	990	0
chr17	53441016	53441797	melanoma_Garraway_short_term_cultures.48109	0	.	53441016	53441797	0	1	781	0
chr17	53441097	53441616	brain_AmbionMAQC.31181	0	.	53441097	53441616	0	1	519	0
chr17	53441119	53441883	K562.31661	0	.	53441119	53441883	0	1	764	0
chr17	53442194	53443347	HepG2_Caltech_ENCODE.26888	0	.	53442194	53443347	0	1	1153	0
chr17	53442229	53450295	B_Cells_Pritchard.2276261	0	+	53442229	53450295	0	3	473,1012,66	0,1258,8000
chr17	53442238	53444678	H1_polyA+.82196	0	.	53442238	53444678	0	1	2440	0
chr17	53442585	53443264	REMC_LuminalBreast.70484	0	.	53442585	53443264	0	1	679	0
chr17	53444880	53445672	REMC_LuminalBreast.70486	0	.	53444880	53445672	0	1	792	0
chr17	53451906	53452356	brain_AmbionMAQC.31183	0	.	53451906	53452356	0	1	450	0
chr17	53479009	53479426	A549_Myers.59737	0	.	53479009	53479426	0	1	417	0
chr17	53479025	53480012	prostate_carcinoma.69947	0	.	53479025	53480012	0	1	987	0
chr17	53487198	53487512	A549_Myers.59738	0	.	53487198	53487512	0	1	314	0
chr17	53523834	53524164	colon_Burge.27089	0	.	53523834	53524164	0	1	330	0
chr17	53523846	53524164	skeletal_muscle_Burge.21043	0	.	53523846	53524164	0	1	318	0
chr17	53524022	53524985	lymph_node_Burge.35596	0	.	53524022	53524985	0	1	963	0
chr17	53524118	53525475	MDAMB231_Thompson.15786	0	.	53524118	53525475	0	1	1357	0
chr17	53524439	53525283	HME_Burge.28995	0	.	53524439	53525283	0	1	844	0
chr17	53524933	53532884	ZR751_Thompson.17236	0	-	53524933	53532884	0	2	9,5319	0,2632
chr17	53529497	53533839	HIT000044407	0	-	53529497	53533839	0	1	4342	0
chr17	53530890	53533124	melanoma_Garraway_short_term_cultures.48113	0	.	53530890	53533124	0	1	2234	0
chr17	53531110	53533843	HIT000021030	0	-	53531110	53533843	0	1	2733	0
chr17	53531518	53532668	BT20_Thompson.15383	0	.	53531518	53532668	0	1	1150	0
chr17	53531552	53533694	MeWo_Garraway.25495	0	.	53531552	53533694	0	1	2142	0
chr17	53531676	53532744	CD4_Plagnol_activated.45574	0	.	53531676	53532744	0	1	1068	0
chr17	53532218	53546724	prostate_normal.41260	0	-	53532218	53546724	0	2	388,8	0,14498
chr17	53532235	53532864	K562.31682	0	.	53532235	53532864	0	1	629	0
chr17	53532261	53532684	brain_AmbionMAQC.31189	0	.	53532261	53532684	0	1	423	0
chr17	53532280	53532853	HeLa_polyA+_Chen.25705	0	.	53532280	53532853	0	1	573	0
chr17	53532282	53532708	B_cells_Cheung.137029	0	.	53532282	53532708	0	1	426	0
chr17	53533009	53533790	K562.31683	0	.	53533009	53533790	0	1	781	0
chr17	53533347	53533785	MDAMB468_Thompson.17034	0	.	53533347	53533785	0	1	438	0
chr17	53547724	53548076	A549_Myers.59751	0	.	53547724	53548076	0	1	352	0
chr17	53548321	53549660	REMC_MyoepithelialBreast.65460	0	.	53548321	53549660	0	1	1339	0
chr17	53548336	53548646	B_Cells_Pritchard.2276599	0	.	53548336	53548646	0	1	310	0
chr17	53548871	53550710	REMC_BreastStem.35986	0	.	53548871	53550710	0	1	1839	0
chr17	53549681	53550211	H1_polyA+.82153	0	.	53549681	53550211	0	1	530	0
chr17	53549734	53550799	REMC_MyoepithelialBreast.65461	0	.	53549734	53550799	0	1	1065	0
chr17	53618619	53619024	A549_Myers.59754	0	.	53618619	53619024	0	1	405	0
chr17	53621653	53622104	A549_Myers.59755	0	.	53621653	53622104	0	1	451	0
chr17	53767656	53768100	prostate_carcinoma.70528	0	.	53767656	53768100	0	1	444	0
chr17	53768089	53768406	CD4_Snyder.52666	0	.	53768089	53768406	0	1	317	0
chr17	53768535	53769390	prostate_carcinoma.70529	0	.	53768535	53769390	0	1	855	0
chr17	53768838	53771024	CD4_Snyder.52669	0	.	53768838	53771024	0	1	2186	0
chr17	53774011	53775281	REMC_LuminalBreast.70514	0	.	53774011	53775281	0	1	1270	0
chr17	53774176	53774992	K562.31709	0	.	53774176	53774992	0	1	816	0
chr17	53980794	53986895	REMC_LuminalBreast.70878	0	.	53980794	53986895	0	1	6101	0
chr17	53984064	53985218	REMC_MyoepithelialBreast.65515	0	.	53984064	53985218	0	1	1154	0
chr17	54861293	54862078	brain_AmbionMAQC.31255	0	.	54861293	54862078	0	1	785	0
chr17	54866035	54866995	BT474_Burge_Thompson.24205	0	.	54866035	54866995	0	1	960	0
chr17	54866338	54866991	CD4_Plagnol_resting.44599	0	.	54866338	54866991	0	1	653	0
chr17	54866401	54866992	B_Cells_Pritchard.2279309	0	.	54866401	54866992	0	1	591	0
chr17	54870942	54872022	REMC_LuminalBreast.70605	0	.	54870942	54872022	0	1	1080	0
chr17	54898457	54899670	REMC_BreastStem.36046	0	.	54898457	54899670	0	1	1213	0
chr17	55047567	55049096	REMC_MyoepithelialBreast.66122	0	.	55047567	55049096	0	1	1529	0
chr17	55405676	55406294	REMC_LuminalBreast.70634	0	.	55405676	55406294	0	1	618	0
chr17	55405681	55406246	REMC_MyoepithelialBreast.65630	0	.	55405681	55406246	0	1	565	0
chr17	55469165	55470193	MCF7_Burge_Thompson.22147	0	.	55469165	55470193	0	1	1028	0
chr17	55469196	55469518	A549_Myers.59926	0	.	55469196	55469518	0	1	322	0
chr17	55471348	55472366	MCF7_Burge_Thompson.22148	0	+	55471348	55472366	0	2	147,230	0,788
chr17	55523136	55523971	MIP101.48665	0	.	55523136	55523971	0	1	835	0
chr17	55559354	55567980	H1_polyA+.82471	0	-	55559354	55567980	0	3	1879,1228,1082	0,4492,7544
chr17	55560298	55561380	melanoma_Garraway_short_term_cultures.48303	0	.	55560298	55561380	0	1	1082	0
chr17	55560318	55568458	B_Cells_Pritchard.2280663	0	+	55560318	55568458	0	3	46,72,2235	0,5530,5905
chr17	55560390	55567928	prostate_carcinoma.70134	0	+	55560390	55567928	0	3	1396,584,1361	0,4954,6177
chr17	55560391	55561759	MCF7_Burge_Thompson.22166	0	.	55560391	55561759	0	1	1368	0
chr17	55566106	55567980	H1_polyA+.82472	0	.	55566106	55567980	0	1	1874	0
chr17	55566123	55567823	HeLa_polyA+_Chen.25785	0	.	55566123	55567823	0	1	1700	0
chr17	55566130	55567845	T47D_Burge_Thompson.20867	0	.	55566130	55567845	0	1	1715	0
chr17	55566131	55568046	B_cells_Cheung.137510	0	.	55566131	55568046	0	1	1915	0
chr17	55566232	55567815	melanoma_Garraway_short_term_cultures.48307	0	.	55566232	55567815	0	1	1583	0
chr17	55566237	55568009	brain_AmbionMAQC.31302	0	.	55566237	55568009	0	1	1772	0
chr17	55566261	55568837	MCF7_Burge_Thompson.22173	0	.	55566261	55568837	0	1	2576	0
chr17	55566298	55567846	prostate_normal.41338	0	.	55566298	55567846	0	1	1548	0
chr17	55566341	55567158	H9_polyA+.31823	0	.	55566341	55567158	0	1	817	0
chr17	55566562	55567843	BT474_Burge_Thompson.24330	0	.	55566562	55567843	0	1	1281	0
chr17	55566780	55567765	MDAMB468_Thompson.17101	0	.	55566780	55567765	0	1	985	0
chr17	55566921	55568133	A549_Myers.59944	0	.	55566921	55568133	0	1	1212	0
chr17	55568246	55568866	A549_Myers.59945	0	.	55568246	55568866	0	1	620	0
chr17	55571568	55572417	MCF7_Burge_Thompson.22174	0	.	55571568	55572417	0	1	849	0
chr17	55573052	55574091	MCF7_Burge_Thompson.22175	0	.	55573052	55574091	0	1	1039	0
chr17	55573175	55573773	B_cells_Cheung.137513	0	.	55573175	55573773	0	1	598	0
chr17	55573191	55573876	A549_Myers.59947	0	.	55573191	55573876	0	1	685	0
chr17	55574205	55575960	MCF7_Burge_Thompson.22170	0	.	55574205	55575960	0	1	1755	0
chr17	55577106	55578768	MCF7_Burge_Thompson.22176	0	.	55577106	55578768	0	1	1662	0
chr17	55577781	55578245	B_Cells_Pritchard.2280703	0	-	55577781	55578245	0	1	464	0
chr17	55578918	55579351	B_Cells_Pritchard.2280711	0	-	55578918	55579351	0	1	433	0
chr17	55607038	55607778	B_cells_Cheung.137518	0	.	55607038	55607778	0	1	740	0
chr17	55960824	55961360	MIP101.48708	0	.	55960824	55961360	0	1	536	0
chr17	55965773	55967174	B_cells_Cheung.137602	0	.	55965773	55967174	0	1	1401	0
chr17	55965840	55967153	H1_polyA+.82596	0	.	55965840	55967153	0	1	1313	0
chr17	55965852	55967129	B_Cells_Pritchard.2281829	0	+	55965852	55967129	0	1	1277	0
chr17	55977683	55979239	B_cells_Cheung.137612	0	.	55977683	55979239	0	1	1556	0
chr17	55980564	55982091	H1_polyA+.82605	0	.	55980564	55982091	0	1	1527	0
chr17	55989855	55990335	B_cells_Cheung.137616	0	.	55989855	55990335	0	1	480	0
chr17	55990739	55991798	HepG2_Caltech_ENCODE.26312	0	.	55990739	55991798	0	1	1059	0
chr17	56101055	56102351	REMC_MyoepithelialBreast.65735	0	.	56101055	56102351	0	1	1296	0
chr17	56825475	56831787	HepG2_Caltech_ENCODE.26323	0	-	56825475	56831787	0	2	3050,1744	0,4568
chr17	56825590	56831758	HeLa_polyA+_Chen.25807	0	-	56825590	56831758	0	2	300,377	0,5791
chr17	56826121	56827980	HeLa_polyA+_Chen.25810	0	.	56826121	56827980	0	1	1859	0
chr17	56827039	56827479	IMR90_UCSD_REMC.35794	0	+	56827039	56827479	0	1	440	0
chr17	56827703	56828491	liver_polyA+.95535	0	.	56827703	56828491	0	1	788	0
chr17	56828036	56828481	HeLa_polyA+_Chen.25811	0	.	56828036	56828481	0	1	445	0
chr17	56828542	56829350	T47D_Burge_Thompson.20893	0	.	56828542	56829350	0	1	808	0
chr17	56828557	56829419	brain_AmbionMAQC.31355	0	.	56828557	56829419	0	1	862	0
chr17	56828567	56829426	HeLa_polyA+_Chen.25812	0	.	56828567	56829426	0	1	859	0
chr17	56829643	56830594	HeLa_polyA+_Chen.25813	0	.	56829643	56830594	0	1	951	0
chr17	56842554	56842869	IMR90_UCSD_REMC.35778	0	-	56842554	56842869	0	1	315	0
chr17	56848153	56849104	MCF7_Burge_Thompson.23297	0	.	56848153	56849104	0	1	951	0
chr17	56863829	56865457	MCF7_Burge_Thompson.23300	0	.	56863829	56865457	0	1	1628	0
chr17	56875176	56875919	MCF7_Burge_Thompson.23304	0	.	56875176	56875919	0	1	743	0
chr17	56876214	56876694	MCF7_Burge_Thompson.23305	0	.	56876214	56876694	0	1	480	0
chr17	56883579	56883957	A549_Myers.60046	0	.	56883579	56883957	0	1	378	0
chr17	56920205	56923093	MCF7_Burge_Thompson.22339	0	.	56920205	56923093	0	1	2888	0
chr17	56922119	56922665	A549_Myers.60060	0	.	56922119	56922665	0	1	546	0
chr17	57362813	57363563	REMC_MyoepithelialBreast.66081	0	.	57362813	57363563	0	1	750	0
chr17	57364414	57365137	REMC_LuminalBreast.71003	0	.	57364414	57365137	0	1	723	0
chr17	57364512	57365167	REMC_BreastStem.36396	0	.	57364512	57365167	0	1	655	0
chr17	57364705	57365128	REMC_MyoepithelialBreast.66082	0	.	57364705	57365128	0	1	423	0
chr17	57365266	57366475	REMC_LuminalBreast.70992	0	.	57365266	57366475	0	1	1209	0
chr17	57365368	57366601	REMC_BreastStem.36397	0	.	57365368	57366601	0	1	1233	0
chr17	57365401	57366751	REMC_MyoepithelialBreast.66083	0	.	57365401	57366751	0	1	1350	0
chr17	57370973	57372181	REMC_BreastStem.36400	0	.	57370973	57372181	0	1	1208	0
chr17	57497770	57498082	IMR90_UCSD_REMC.35829	0	+	57497770	57498082	0	1	312	0
chr17	57569022	57569841	B_cells_Cheung.138086	0	.	57569022	57569841	0	1	819	0
chr17	57569055	57569808	H1_polyA+.82860	0	.	57569055	57569808	0	1	753	0
chr17	57569063	57569887	MeWo_Garraway.25689	0	.	57569063	57569887	0	1	824	0
chr17	57569095	57569808	HeLa_polyA+_Chen.25824	0	.	57569095	57569808	0	1	713	0
chr17	57569095	57569807	REMC_LuminalBreast.71004	0	.	57569095	57569807	0	1	712	0
chr17	57569096	57570236	H9_polyA+.31871	0	-	57569096	57570236	0	2	165,260	0,880
chr17	57569096	57569807	H9_polyA+.31872	0	.	57569096	57569807	0	1	711	0
chr17	57569097	57569810	K562.31792	0	.	57569097	57569810	0	1	713	0
chr17	57569098	57569809	REMC_MyoepithelialBreast.65843	0	.	57569098	57569809	0	1	711	0
chr17	57569100	57569807	HepG2_Caltech_ENCODE.26347	0	.	57569100	57569807	0	1	707	0
chr17	57569103	57569796	REMC_BreastStem.36216	0	.	57569103	57569796	0	1	693	0
chr17	57569104	57569762	brain_AmbionMAQC.31386	0	.	57569104	57569762	0	1	658	0
chr17	57569124	57569673	melanoma_Garraway_short_term_cultures.48544	0	.	57569124	57569673	0	1	549	0
chr17	57569127	57569755	CD4_Plagnol_resting.44789	0	.	57569127	57569755	0	1	628	0
chr17	57569131	57572013	prostate_carcinoma.70316	0	-	57569131	57572013	0	2	569,98	0,2784
chr17	57569133	57569757	CD4_Plagnol_activated.45853	0	.	57569133	57569757	0	1	624	0
chr17	57569139	57569666	A549_Myers.60097	0	.	57569139	57569666	0	1	527	0
chr17	57569139	57570216	A549_Myers.60098	0	+	57569139	57570216	0	2	262,98	0,979
chr17	57569160	57572772	HepG2_Caltech_ENCODE.26350	0	-	57569160	57572772	0	2	522,206	0,3406
chr17	57569207	57569858	MCF7_Burge_Thompson.22462	0	.	57569207	57569858	0	1	651	0
chr17	57569216	57569759	ZR751_Thompson.17292	0	.	57569216	57569759	0	1	543	0
chr17	57569217	57569762	MCF10A_Thompson.15346	0	.	57569217	57569762	0	1	545	0
chr17	57569234	57569804	H1_rRNA-depleted_UCSD_REMC.62012	0	.	57569234	57569804	0	1	570	0
chr17	57569266	57569762	T47D_Burge_Thompson.20908	0	.	57569266	57569762	0	1	496	0
chr17	57569270	57569856	BT474_Burge_Thompson.24390	0	.	57569270	57569856	0	1	586	0
chr17	57569279	57569658	CD4_Snyder.52954	0	.	57569279	57569658	0	1	379	0
chr17	57569312	57569827	HIT000332083	0	-	57569312	57569827	0	1	515	0
chr17	57569356	57569805	HeLa_polyA-_Chen.13992	0	.	57569356	57569805	0	1	449	0
chr17	57569375	57569762	BT20_Thompson.15468	0	.	57569375	57569762	0	1	387	0
chr17	57569436	57569762	MDAMB468_Thompson.17134	0	.	57569436	57569762	0	1	326	0
chr17	57569438	57569762	MDAMB231_Thompson.15895	0	.	57569438	57569762	0	1	324	0
chr17	57569445	57572751	MIP101.48854	0	-	57569445	57572751	0	6	153,102,39,114,246,176	0,660,762,2170,2352,3130
chr17	57569827	57570206	CD4_Plagnol_activated.45855	0	.	57569827	57570206	0	1	379	0
chr17	57569877	57570394	K562.31793	0	.	57569877	57570394	0	1	517	0
chr17	57569899	57570210	brain_AmbionMAQC.31387	0	.	57569899	57570210	0	1	311	0
chr17	57570006	57571704	CD4_Plagnol_resting.44791	0	-	57570006	57571704	0	2	240,89	0,1609
chr17	57570628	57572760	K562.31794	0	.	57570628	57572760	0	1	2132	0
chr17	57570745	57571054	REMC_MyoepithelialBreast.65845	0	.	57570745	57571054	0	1	309	0
chr17	57570769	57572184	H1_polyA+.82858	0	.	57570769	57572184	0	1	1415	0
chr17	57570769	57572054	H1_polyA+.82859	0	-	57570769	57572054	0	2	960,265	0,1020
chr17	57571068	57572053	H9_polyA+.31874	0	.	57571068	57572053	0	1	985	0
chr17	57571109	57571735	HeLa_polyA+_Chen.25827	0	.	57571109	57571735	0	1	626	0
chr17	57571109	57572054	HepG2_Caltech_ENCODE.26349	0	.	57571109	57572054	0	2	624,270	0,675
chr17	57571133	57571699	MeWo_Garraway.25692	0	.	57571133	57571699	0	1	566	0
chr17	57571134	57571700	ZR751_Thompson.17295	0	.	57571134	57571700	0	1	566	0
chr17	57571135	57571707	MCF10A_Thompson.15348	0	.	57571135	57571707	0	1	572	0
chr17	57571136	57572029	brain_AmbionMAQC.31389	0	.	57571136	57572029	0	1	893	0
chr17	57571139	57571704	CD4_Plagnol_resting.44790	0	.	57571139	57571704	0	1	565	0
chr17	57571140	57571709	BT474_Burge_Thompson.24393	0	.	57571140	57571709	0	1	569	0
chr17	57571170	57572055	REMC_MyoepithelialBreast.65846	0	.	57571170	57572055	0	1	885	0
chr17	57571285	57572055	REMC_LuminalBreast.71007	0	.	57571285	57572055	0	1	770	0
chr17	57571286	57572051	REMC_BreastStem.36218	0	.	57571286	57572051	0	1	765	0
chr17	57571310	57572029	MCF7_Burge_Thompson.22466	0	.	57571310	57572029	0	1	719	0
chr17	57571310	57571705	T47D_Burge_Thompson.20911	0	.	57571310	57571705	0	1	395	0
chr17	57571317	57572030	melanoma_Garraway_short_term_cultures.48548	0	.	57571317	57572030	0	1	713	0
chr17	57572483	57572823	MCF7_Burge_Thompson.22467	0	.	57572483	57572823	0	1	340	0
chr17	57882542	57883064	H9_polyA+.31881	0	.	57882542	57883064	0	1	522	0
chr17	57882711	57883111	H1_rRNA-depleted_UCSD_REMC.62027	0	.	57882711	57883111	0	1	400	0
chr17	58048554	58050027	REMC_LuminalBreast.71119	0	.	58048554	58050027	0	1	1473	0
chr17	58049212	58051482	REMC_BreastStem.36246	0	.	58049212	58051482	0	1	2270	0
chr17	58050975	58051311	A549_Myers.60125	0	.	58050975	58051311	0	1	336	0
chr17	58055615	58056535	HepG2_Caltech_ENCODE.26379	0	.	58055615	58056535	0	1	920	0
chr17	58055741	58057465	H1_polyA+.82923	0	.	58055741	58057465	0	1	1724	0
chr17	58055951	58056431	MIP101.48889	0	.	58055951	58056431	0	1	480	0
chr17	58055963	58057484	B_cells_Cheung.138269	0	.	58055963	58057484	0	1	1521	0
chr17	58056017	58057181	CD4_Plagnol_resting.44838	0	.	58056017	58057181	0	1	1164	0
chr17	58056035	58056668	CD4_Plagnol_activated.45887	0	.	58056035	58056668	0	1	633	0
chr17	58056159	58057047	A549_Myers.60127	0	.	58056159	58057047	0	1	888	0
chr17	58056431	58056966	MIP101.48890	0	.	58056431	58056966	0	1	535	0
chr17	58239592	58267482	HIT000096101	0	+	58239592	58267482	0	2	452,1377	0,26513
chr17	58249613	58251260	MCF7_Burge_Thompson.22526	0	.	58249613	58251260	0	1	1647	0
chr17	58250014	58251001	REMC_LuminalBreast.71136	0	.	58250014	58251001	0	1	987	0
chr17	58292143	58293320	MCF7_Burge_Thompson.22536	0	.	58292143	58293320	0	1	1177	0
chr17	58306165	58311073	MCF7_Burge_Thompson.22541	0	.	58306165	58311073	0	1	4908	0
chr17	58327856	58329070	MCF7_Burge_Thompson.22545	0	.	58327856	58329070	0	1	1214	0
chr17	58329322	58330340	MCF7_Burge_Thompson.22546	0	.	58329322	58330340	0	1	1018	0
chr17	58333559	58334738	MCF7_Burge_Thompson.22548	0	.	58333559	58334738	0	1	1179	0
chr17	58341449	58342552	MCF7_Burge_Thompson.22645	0	.	58341449	58342552	0	1	1103	0
chr17	58389512	58390680	MCF7_Burge_Thompson.22651	0	.	58389512	58390680	0	1	1168	0
chr17	58393315	58394842	MCF7_Burge_Thompson.22653	0	.	58393315	58394842	0	1	1527	0
chr17	58880363	58882163	REMC_LuminalBreast.71155	0	.	58880363	58882163	0	1	1800	0
chr17	58880419	58881932	REMC_MyoepithelialBreast.66065	0	.	58880419	58881932	0	1	1513	0
chr17	58882327	58886909	REMC_LuminalBreast.71156	0	.	58882327	58886909	0	1	4582	0
chr17	58883216	58884112	A549_Myers.60179	0	.	58883216	58884112	0	1	896	0
chr17	58883220	58884485	REMC_BreastStem.36269	0	.	58883220	58884485	0	1	1265	0
chr17	58883399	58885211	REMC_MyoepithelialBreast.66066	0	-	58883399	58885211	0	2	1691,21	0,1791
chr17	58889012	58890812	REMC_LuminalBreast.71157	0	.	58889012	58890812	0	1	1800	0
chr17	58906418	58907021	A549_Myers.60183	0	.	58906418	58907021	0	1	603	0
chr17	59280216	59280843	A549_Myers.60247	0	.	59280216	59280843	0	1	627	0
chr17	59280397	59281210	K562.31898	0	.	59280397	59281210	0	1	813	0
chr17	59282100	59282639	K562.31899	0	.	59282100	59282639	0	1	539	0
chr17	59356445	59357563	B_Cells_Pritchard.2290567	0	+	59356445	59357563	0	1	1118	0
chr17	59356639	59357743	B_cells_Cheung.138342	0	.	59356639	59357743	0	1	1104	0
chr17	59366523	59366859	B_cells_Cheung.138347	0	.	59366523	59366859	0	1	336	0
chr17	59405230	59405952	prostate_carcinoma.70486	0	.	59405230	59405952	0	1	722	0
chr17	59409760	59410885	prostate_normal.41522	0	.	59409760	59410885	0	1	1125	0
chr17	59409998	59410850	prostate_carcinoma.70490	0	.	59409998	59410850	0	1	852	0
chr17	59418268	59418747	A549_Myers.60276	0	.	59418268	59418747	0	1	479	0
chr17	59419508	59420051	B_Cells_Pritchard.2290747	0	+	59419508	59420051	0	1	543	0
chr17	59419974	59420315	A549_Myers.60277	0	.	59419974	59420315	0	1	341	0
chr17	59420336	59421813	prostate_normal.41525	0	.	59420336	59421813	0	1	1477	0
chr17	59421416	59422058	A549_Myers.60279	0	.	59421416	59422058	0	1	642	0
chr17	59421971	59422443	REMC_LuminalBreast.71236	0	.	59421971	59422443	0	1	472	0
chr17	59424578	59425559	REMC_LuminalBreast.71238	0	.	59424578	59425559	0	1	981	0
chr17	59427238	59429036	Rinn_00025728	0	-	59427238	59429036	0	2	1117,181	0,1617
chr17	59468565	59468893	B_cells_Cheung.138381	0	.	59468565	59468893	0	1	328	0
chr17	59470232	59472117	CD4_Plagnol_activated.45986	0	.	59470232	59472117	0	1	1885	0
chr17	59470232	59471980	prostate_carcinoma.70496	0	.	59470232	59471980	0	1	1748	0
chr17	59470232	59472117	MeI_Garraway.12740	0	.	59470232	59472117	0	1	1885	0
chr17	59470241	59471978	CD4_Snyder.53068	0	.	59470241	59471978	0	1	1737	0
chr17	59470241	59472935	HIT000044299	0	+	59470241	59472935	0	1	2694	0
chr17	59470248	59471705	kidney_Gilad.62086	0	.	59470248	59471705	0	1	1457	0
chr17	59470249	59471983	melanoma_Garraway_short_term_cultures.48691	0	.	59470249	59471983	0	1	1734	0
chr17	59470250	59472122	MDAMB468_Thompson.17178	0	.	59470250	59472122	0	1	1872	0
chr17	59470251	59472127	ZR751_Thompson.17329	0	.	59470251	59472127	0	1	1876	0
chr17	59470252	59472125	BT474_Burge_Thompson.24476	0	.	59470252	59472125	0	1	1873	0
chr17	59470255	59472124	MCF7_Burge_Thompson.22630	0	.	59470255	59472124	0	1	1869	0
chr17	59470261	59472013	HeLa_polyA+_Chen.25864	0	.	59470261	59472013	0	1	1752	0
chr17	59470265	59471990	MDAMB231_Thompson.15936	0	.	59470265	59471990	0	1	1725	0
chr17	59470266	59471980	T47D_Burge_Thompson.20959	0	.	59470266	59471980	0	1	1714	0
chr17	59470266	59471979	MCF10A_Thompson.15379	0	.	59470266	59471979	0	1	1713	0
chr17	59470266	59472123	BT20_Thompson.15515	0	.	59470266	59472123	0	1	1857	0
chr17	59470284	59471966	MeWo_Garraway.25768	0	.	59470284	59471966	0	1	1682	0
chr17	59470284	59471959	K562.31915	0	.	59470284	59471959	0	1	1675	0
chr17	59470327	59472013	H9_polyA+.31967	0	.	59470327	59472013	0	1	1686	0
chr17	59470752	59471631	lymph_node_Burge.35808	0	.	59470752	59471631	0	1	879	0
chr17	59470759	59471863	brain_AmbionMAQC.31448	0	.	59470759	59471863	0	1	1104	0
chr17	59470763	59471973	A549_Myers.60291	0	.	59470763	59471973	0	1	1210	0
chr17	59471225	59471541	adipose_Burge.28011	0	.	59471225	59471541	0	1	316	0
chr17	59471226	59471669	testes_Burge.38128	0	.	59471226	59471669	0	1	443	0
chr17	59471234	59471560	skeletal_muscle_Burge.21230	0	.	59471234	59471560	0	1	326	0
chr17	59563901	59564421	B_cells_Cheung.138451	0	.	59563901	59564421	0	1	520	0
chr17	59695507	59696787	REMC_MyoepithelialBreast.66251	0	.	59695507	59696787	0	1	1280	0
chr17	59824340	59825791	HeLa_polyA+_Chen.25881	0	.	59824340	59825791	0	1	1451	0
chr17	59824786	59825424	melanoma_Garraway_short_term_cultures.48711	0	.	59824786	59825424	0	1	638	0
chr17	59824913	59825628	B_Cells_Pritchard.2291879	0	.	59824913	59825628	0	1	715	0
chr17	59825859	59827849	HeLa_polyA+_Chen.25882	0	.	59825859	59827849	0	1	1990	0
chr17	59837210	59838510	HeLa_polyA+_Chen.25893	0	.	59837210	59838510	0	1	1300	0
chr17	59837845	59838329	B_Cells_Pritchard.2291933	0	.	59837845	59838329	0	1	484	0
chr17	59839033	59841039	HeLa_polyA+_Chen.25895	0	.	59839033	59841039	0	1	2006	0
chr17	59855895	59858059	REMC_MyoepithelialBreast.66255	0	.	59855895	59858059	0	1	2164	0
chr17	59860236	59861898	REMC_LuminalBreast.71292	0	.	59860236	59861898	0	1	1662	0
chr17	59862051	59864603	REMC_LuminalBreast.71293	0	.	59862051	59864603	0	1	2552	0
chr17	59863828	59865095	REMC_MyoepithelialBreast.66259	0	.	59863828	59865095	0	1	1267	0
chr17	59865215	59866515	REMC_LuminalBreast.71294	0	.	59865215	59866515	0	1	1300	0
chr17	59865435	59867120	REMC_MyoepithelialBreast.66260	0	.	59865435	59867120	0	1	1685	0
chr17	59869969	59871678	REMC_LuminalBreast.71295	0	.	59869969	59871678	0	1	1709	0
chr17	59896854	59901951	REMC_MyoepithelialBreast.66275	0	.	59896854	59901951	0	1	5097	0
chr17	59899043	59901954	REMC_BreastStem.36332	0	.	59899043	59901954	0	1	2911	0
chr17	59967501	59967903	B_Cells_Pritchard.2292365	0	.	59967501	59967903	0	1	402	0
chr17	60173595	60174474	REMC_LuminalBreast.71504	0	.	60173595	60174474	0	1	879	0
chr17	60190489	60194750	pHIT000030011	0	+	60190489	60194750	0	2	35,451	0,3810
chr17	60190999	60203075	REMC_LuminalBreast.71598	0	.	60190999	60203075	0	1	12076	0
chr17	60191023	60193582	REMC_BreastStem.36357	0	.	60191023	60193582	0	1	2559	0
chr17	60191023	60203040	REMC_MyoepithelialBreast.66301	0	.	60191023	60203040	0	1	12017	0
chr17	60191394	60192219	kidney_Gilad.62188	0	-	60191394	60192219	0	2	287,207	0,618
chr17	60191657	60196599	HIT000385192	0	-	60191657	60196599	0	1	4942	0
chr17	60192699	60194881	HIT000046430	0	-	60192699	60194881	0	1	2182	0
chr17	60193540	60195041	H1_polyA+.83165	0	.	60193540	60195041	0	1	1501	0
chr17	60193658	60194156	B_cells_Cheung.138663	0	.	60193658	60194156	0	1	498	0
chr17	60193731	60194859	REMC_BreastStem.36358	0	.	60193731	60194859	0	1	1128	0
chr17	60193809	60194825	brain_AmbionMAQC.31507	0	.	60193809	60194825	0	1	1016	0
chr17	60193829	60194832	HeLa_polyA+_Chen.25914	0	.	60193829	60194832	0	1	1003	0
chr17	60194027	60194847	MCF10A_Thompson.15399	0	.	60194027	60194847	0	1	820	0
chr17	60194222	60194617	B_cells_Cheung.138664	0	.	60194222	60194617	0	1	395	0
chr17	60194250	60194759	CD4_Plagnol_activated.46121	0	.	60194250	60194759	0	1	509	0
chr17	60194288	60194599	A549_Myers.60365	0	.	60194288	60194599	0	1	311	0
chr17	60195117	60197966	REMC_BreastStem.36359	0	.	60195117	60197966	0	1	2849	0
chr17	60195126	60196067	HepG2_Caltech_ENCODE.26471	0	.	60195126	60196067	0	1	941	0
chr17	60195159	60197583	H1_polyA+.83166	0	.	60195159	60197583	0	1	2424	0
chr17	60198651	60202179	REMC_BreastStem.36361	0	.	60198651	60202179	0	1	3528	0
chr17	60198964	60199878	BT474_Burge_Thompson.24503	0	.	60198964	60199878	0	1	914	0
chr17	60199200	60199561	MCF10A_Thompson.15400	0	.	60199200	60199561	0	1	361	0
chr17	60199201	60200862	MCF7_Burge_Thompson.22682	0	.	60199201	60200862	0	1	1661	0
chr17	60199210	60199835	B_cells_Cheung.138666	0	.	60199210	60199835	0	1	625	0
chr17	60199377	60199799	B_Cells_Pritchard.2292961	0	.	60199377	60199799	0	1	422	0
chr17	60199392	60200034	brain_AmbionMAQC.31508	0	.	60199392	60200034	0	1	642	0
chr17	60199399	60199874	T47D_Burge_Thompson.20996	0	.	60199399	60199874	0	1	475	0
chr17	60199446	60200561	HeLa_polyA+_Chen.25918	0	.	60199446	60200561	0	1	1115	0
chr17	60199813	60200850	HepG2_Caltech_ENCODE.26472	0	.	60199813	60200850	0	1	1037	0
chr17	60199927	60201450	H1_polyA+.83168	0	.	60199927	60201450	0	1	1523	0
chr17	60199927	60201504	B_Cells_Pritchard.2292963	0	.	60199927	60201504	0	1	1577	0
chr17	60200083	60200488	CD4_Plagnol_resting.45018	0	.	60200083	60200488	0	1	405	0
chr17	60200235	60200538	HME_Burge.29300	0	.	60200235	60200538	0	1	303	0
chr17	60200418	60201431	brain_AmbionMAQC.31509	0	.	60200418	60201431	0	1	1013	0
chr17	60200549	60201007	T47D_Burge_Thompson.20995	0	.	60200549	60201007	0	1	458	0
chr17	60200633	60201425	HeLa_polyA+_Chen.25917	0	.	60200633	60201425	0	1	792	0
chr17	60200916	60201289	prostate_carcinoma.70587	0	.	60200916	60201289	0	1	373	0
chr17	60200929	60201261	A549_Myers.60366	0	.	60200929	60201261	0	1	332	0
chr17	60200941	60201285	B_cells_Cheung.138667	0	.	60200941	60201285	0	1	344	0
chr17	60200966	60201416	MCF7_Burge_Thompson.22683	0	.	60200966	60201416	0	1	450	0
chr17	60201565	60202328	HeLa_polyA+_Chen.25920	0	.	60201565	60202328	0	1	763	0
chr17	60201573	60202643	BT474_Burge_Thompson.24504	0	.	60201573	60202643	0	1	1070	0
chr17	60201574	60202545	brain_AmbionMAQC.31510	0	.	60201574	60202545	0	1	971	0
chr17	60201582	60202418	B_cells_Cheung.138668	0	.	60201582	60202418	0	1	836	0
chr17	60201583	60202809	MCF7_Burge_Thompson.22684	0	.	60201583	60202809	0	1	1226	0
chr17	60201588	60202381	T47D_Burge_Thompson.20999	0	.	60201588	60202381	0	1	793	0
chr17	60201650	60202397	liver_polyA+.95981	0	.	60201650	60202397	0	1	747	0
chr17	60201744	60203050	CD4_Plagnol_activated.46122	0	.	60201744	60203050	0	1	1306	0
chr17	60201865	60202783	CD4_Plagnol_resting.45019	0	.	60201865	60202783	0	1	918	0
chr17	60202606	60203029	liver_polyA+.95982	0	.	60202606	60203029	0	1	423	0
chr17	60202683	60203042	brain_AmbionMAQC.31511	0	.	60202683	60203042	0	1	359	0
chr17	60203171	60203888	REMC_MyoepithelialBreast.66302	0	.	60203171	60203888	0	1	717	0
chr17	60203191	60205834	brain_AmbionMAQC.31512	0	.	60203191	60205834	0	1	2643	0
chr17	60203191	60203849	MCF7_Burge_Thompson.22686	0	.	60203191	60203849	0	1	658	0
chr17	60203201	60203925	HeLa_polyA+_Chen.25919	0	.	60203201	60203925	0	1	724	0
chr17	60203380	60203713	MIP101.49045	0	.	60203380	60203713	0	1	333	0
chr17	60204084	60205833	MCF10A_Thompson.15401	0	.	60204084	60205833	0	1	1749	0
chr17	60204484	60205722	liver_polyA+.95984	0	.	60204484	60205722	0	1	1238	0
chr17	60204631	60205775	melanoma_Garraway_short_term_cultures.48756	0	-	60204631	60205775	0	2	26,799	0,345
chr17	60204711	60205775	melanoma_Garraway_short_term_cultures.48757	0	.	60204711	60205775	0	1	1064	0
chr17	60204716	60205219	H1_polyA+.83169	0	.	60204716	60205219	0	1	503	0
chr17	60204729	60205089	A549_Myers.60368	0	.	60204729	60205089	0	1	360	0
chr17	60205146	60205712	A549_Myers.60369	0	.	60205146	60205712	0	1	566	0
chr17	60205284	60205798	H9_polyA+.31994	0	.	60205284	60205798	0	1	514	0
chr17	60205290	60205776	HME_Burge.29308	0	.	60205290	60205776	0	1	486	0
chr17	60208419	60209304	CD4_Plagnol_activated.46125	0	.	60208419	60209304	0	1	885	0
chr17	60208568	60208922	liver_polyA+.95988	0	.	60208568	60208922	0	1	354	0
chr17	60208578	60208926	A549_Myers.60372	0	.	60208578	60208926	0	1	348	0
chr17	60208584	60209100	T47D_Burge_Thompson.21000	0	.	60208584	60209100	0	1	516	0
chr17	60208588	60209092	MDAMB231_Thompson.15963	0	.	60208588	60209092	0	1	504	0
chr17	60208593	60209040	ZR751_Thompson.17357	0	.	60208593	60209040	0	1	447	0
chr17	60208594	60209027	melanoma_Garraway_short_term_cultures.48760	0	.	60208594	60209027	0	1	433	0
chr17	60208600	60209082	HME_Burge.29315	0	.	60208600	60209082	0	1	482	0
chr17	60209412	60211418	T47D_Burge_Thompson.20998	0	.	60209412	60211418	0	1	2006	0
chr17	60209469	60210995	BT20_Thompson.15534	0	.	60209469	60210995	0	1	1526	0
chr17	60210403	60211411	MDAMB468_Thompson.17215	0	.	60210403	60211411	0	1	1008	0
chr17	60210577	60210923	lymph_node_Burge.35904	0	.	60210577	60210923	0	1	346	0
chr17	60347559	60348613	H1_polyA+.83190	0	.	60347559	60348613	0	1	1054	0
chr17	60360852	60361219	B_Cells_Pritchard.2293337	0	-	60360852	60361219	0	1	367	0
chr17	60360945	60361868	REMC_LuminalBreast.71562	0	.	60360945	60361868	0	1	923	0
chr17	60361635	60362354	prostate_carcinoma.70608	0	.	60361635	60362354	0	1	719	0
chr17	60362664	60364218	HeLa_polyA+_Chen.25940	0	.	60362664	60364218	0	1	1554	0
chr17	60362703	60363657	prostate_carcinoma.70613	0	.	60362703	60363657	0	1	954	0
chr17	60362770	60363345	B_cells_Cheung.138731	0	.	60362770	60363345	0	1	575	0
chr17	60362818	60363163	MCF7_Burge_Thompson.22694	0	.	60362818	60363163	0	1	345	0
chr17	60362820	60363162	prostate_normal.41587	0	.	60362820	60363162	0	1	342	0
chr17	60363288	60364183	REMC_LuminalBreast.71563	0	.	60363288	60364183	0	1	895	0
chr17	60363376	60363925	B_Cells_Pritchard.2293299	0	-	60363376	60363925	0	1	549	0
chr17	60363382	60367296	MCF7_Burge_Thompson.22695	0	+	60363382	60367296	0	2	445,134	0,3780
chr17	60363521	60363876	MIP101.49055	0	.	60363521	60363876	0	1	355	0
chr17	60365407	60365901	B_Cells_Pritchard.2293353	0	.	60365407	60365901	0	1	494	0
chr17	60365502	60365863	A549_Myers.60380	0	.	60365502	60365863	0	1	361	0
chr17	60377222	60377698	B_cells_Cheung.138741	0	.	60377222	60377698	0	1	476	0
chr17	60379022	60380383	REMC_MyoepithelialBreast.66325	0	.	60379022	60380383	0	1	1361	0
chr17	60379062	60380411	H1_polyA+.83204	0	.	60379062	60380411	0	1	1349	0
chr17	60379128	60380434	B_cells_Cheung.138744	0	.	60379128	60380434	0	1	1306	0
chr17	60379144	60380396	melanoma_Garraway_short_term_cultures.48767	0	.	60379144	60380396	0	1	1252	0
chr17	60384331	60384660	HepG2_Caltech_ENCODE.26480	0	.	60384331	60384660	0	1	329	0
chr17	60384334	60384656	B_Cells_Pritchard.2293443	0	+	60384334	60384656	0	1	322	0
chr17	60384460	60392630	K562.31990	0	-	60384460	60392630	0	2	177,238	0,7932
chr17	60386754	60387727	REMC_MyoepithelialBreast.66332	0	.	60386754	60387727	0	1	973	0
chr17	60387348	60388478	B_cells_Cheung.138755	0	.	60387348	60388478	0	1	1130	0
chr17	60387691	60389052	HeLa_polyA+_Chen.25956	0	.	60387691	60389052	0	1	1361	0
chr17	60387761	60389313	REMC_LuminalBreast.71575	0	.	60387761	60389313	0	1	1552	0
chr17	60389539	60390448	HeLa_polyA+_Chen.25957	0	.	60389539	60390448	0	1	909	0
chr17	60389594	60390469	B_cells_Cheung.138758	0	.	60389594	60390469	0	1	875	0
chr17	60391864	60392365	REMC_LuminalBreast.71577	0	.	60391864	60392365	0	1	501	0
chr17	60402284	60402879	CD4_Snyder.53182	0	.	60402284	60402879	0	1	595	0
chr17	60418132	60420964	REMC_LuminalBreast.71588	0	.	60418132	60420964	0	1	2832	0
chr17	60418886	60419394	B_cells_Cheung.138779	0	.	60418886	60419394	0	1	508	0
chr17	60418915	60419370	B_Cells_Pritchard.2293685	0	-	60418915	60419370	0	1	455	0
chr17	60421173	60421761	REMC_LuminalBreast.71589	0	.	60421173	60421761	0	1	588	0
chr17	60421371	60421748	REMC_MyoepithelialBreast.66346	0	.	60421371	60421748	0	1	377	0
chr17	60427107	60428255	REMC_MyoepithelialBreast.66352	0	.	60427107	60428255	0	1	1148	0
chr17	60428351	60428795	B_cells_Cheung.138785	0	.	60428351	60428795	0	1	444	0
chr17	60485864	60487498	B_cells_Cheung.138804	0	.	60485864	60487498	0	1	1634	0
chr17	60498023	60500783	B_cells_Cheung.138812	0	.	60498023	60500783	0	1	2760	0
chr17	60498358	60499487	B_Cells_Pritchard.2293997	0	.	60498358	60499487	0	1	1129	0
chr17	60510822	60511857	B_cells_Cheung.138819	0	.	60510822	60511857	0	1	1035	0
chr17	60510920	60513353	B_Cells_Pritchard.2294061	0	.	60510920	60513353	0	1	2433	0
chr17	60510921	60511585	prostate_carcinoma.70638	0	.	60510921	60511585	0	1	664	0
chr17	60511810	60512864	melanoma_Garraway_short_term_cultures.48789	0	.	60511810	60512864	0	1	1054	0
chr17	60511997	60513744	B_cells_Cheung.138820	0	.	60511997	60513744	0	1	1747	0
chr17	60512520	60513307	prostate_carcinoma.70639	0	.	60512520	60513307	0	1	787	0
chr17	60512560	60512943	A549_Myers.60394	0	.	60512560	60512943	0	1	383	0
chr17	60514238	60515565	B_cells_Cheung.138822	0	.	60514238	60515565	0	1	1327	0
chr17	60516954	60517755	B_Cells_Pritchard.2294073	0	+	60516954	60517755	0	1	801	0
chr17	60519547	60521187	B_Cells_Pritchard.2294089	0	+	60519547	60521187	0	2	339,466	0,1174
chr17	60520426	60521760	B_cells_Cheung.138823	0	.	60520426	60521760	0	1	1334	0
chr17	60526504	60549345	B_Cells_Pritchard.2294119	0	+	60526504	60549345	0	4	1118,90,989,44	0,1282,10791,22797
chr17	60526749	60538264	B_cells_Cheung.138829	0	+	60526749	60538264	0	3	873,90,969	0,1037,10546
chr17	60526959	60527885	A549_Myers.60396	0	+	60526959	60527885	0	2	663,99	0,827
chr17	60527234	60539409	Rinn_00025460	0	+	60527234	60539409	0	3	388,91,2115	0,551,10060
chr17	60527370	60529102	Rinn_00025962	0	+	60527370	60529102	0	3	252,91,35	0,415,1697
chr17	60527382	60539610	H1_polyA+.83229	0	+	60527382	60539610	0	3	240,90,2315	0,404,9913
chr17	60527402	60539873	Rinn_00025462	0	+	60527402	60539873	0	4	220,91,62,2579	0,383,8368,9892
chr17	60527402	60539873	Rinn_00025461	0	+	60527402	60539873	0	2	220,2579	0,9892
chr17	60527410	60545741	Rinn_00025463	0	+	60527410	60545741	0	5	212,91,252,157,11	0,375,9884,16223,18320
chr17	60527410	60543679	Rinn_00025963	0	+	60527410	60543679	0	4	212,91,252,46	0,375,9884,16223
chr17	60527411	60543699	Rinn_00025964	0	+	60527411	60543699	0	4	211,91,277,66	0,374,9883,16222
chr17	60527439	60538271	ZR751_Thompson.17365	0	+	60527439	60538271	0	2	437,976	0,9856
chr17	60532954	60533476	A549_Myers.60399	0	.	60532954	60533476	0	1	522	0
chr17	60706180	60715949	MIP101.49085	0	+	60706180	60715949	0	2	348,2699	0,7070
chr17	60712762	60715949	MIP101.49084	0	.	60712762	60715949	0	1	3187	0
chr17	60717192	60717496	A549_Myers.60427	0	.	60717192	60717496	0	1	304	0
chr17	60718944	60720584	MIP101.49087	0	.	60718944	60720584	0	1	1640	0
chr17	60720548	60721232	A549_Myers.60428	0	.	60720548	60721232	0	1	684	0
chr17	60720771	60721604	MIP101.49088	0	.	60720771	60721604	0	1	833	0
chr17	60757202	60757561	B_Cells_Pritchard.2294641	0	.	60757202	60757561	0	1	359	0
chr17	60780881	60782243	MIP101.49089	0	.	60780881	60782243	0	1	1362	0
chr17	60796989	60827878	MIP101.49090	0	-	60796989	60827878	0	5	242,4515,2628,159,553	0,11801,16672,26544,30336
chr17	60827396	60827855	MeI_Garraway.12772	0	.	60827396	60827855	0	1	459	0
chr17	60829001	60829957	MIP101.49099	0	.	60829001	60829957	0	1	956	0
chr17	60852799	60854357	MIP101.49105	0	.	60852799	60854357	0	1	1558	0
chr17	60883707	60887446	MIP101.49115	0	+	60883707	60887446	0	2	238,2896	0,843
chr17	60908618	60910297	MIP101.49121	0	.	60908618	60910297	0	1	1679	0
chr17	60908718	60909648	MeI_Garraway.12774	0	.	60908718	60909648	0	1	930	0
chr17	60922044	60922658	H1_polyA+.83242	0	.	60922044	60922658	0	1	614	0
chr17	60924934	60927499	B_cells_Cheung.138864	0	.	60924934	60927499	0	1	2565	0
chr17	60929685	60931395	MIP101.49789	0	.	60929685	60931395	0	1	1710	0
chr17	60930236	60931480	H1_polyA+.83243	0	.	60930236	60931480	0	1	1244	0
chr17	60930379	60930956	ZR751_Thompson.17368	0	.	60930379	60930956	0	1	577	0
chr17	60941940	60942621	MIP101.49800	0	.	60941940	60942621	0	1	681	0
chr17	60999302	60999758	A549_Myers.60445	0	.	60999302	60999758	0	1	456	0
chr17	60999793	61000149	H1_rRNA-depleted_UCSD_REMC.62270	0	.	60999793	61000149	0	1	356	0
chr17	61011460	61012468	MIP101.49854	0	.	61011460	61012468	0	1	1008	0
chr17	61020427	61021201	MIP101.49140	0	.	61020427	61021201	0	1	774	0
chr17	62315124	62315464	H1_rRNA-depleted_UCSD_REMC.62318	0	.	62315124	62315464	0	1	340	0
chr17	62315138	62315649	H1_polyA+.83268	0	.	62315138	62315649	0	1	511	0
chr17	62315256	62315634	brain_AmbionMAQC.31559	0	.	62315256	62315634	0	1	378	0
chr17	62315266	62321105	BT474_Burge_Thompson.24577	0	.	62315266	62321105	0	1	5839	0
chr17	62315271	62315626	H9_polyA+.32041	0	.	62315271	62315626	0	1	355	0
chr17	62315818	62321229	H1_polyA+.83269	0	.	62315818	62321229	0	1	5411	0
chr17	62315846	62317287	H9_polyA+.32042	0	.	62315846	62317287	0	1	1441	0
chr17	62315847	62319076	brain_AmbionMAQC.31560	0	.	62315847	62319076	0	1	3229	0
chr17	62316508	62317441	B_Cells_Pritchard.2299309	0	.	62316508	62317441	0	1	933	0
chr17	62316668	62317168	A549_Myers.60542	0	.	62316668	62317168	0	1	500	0
chr17	62319350	62321052	brain_AmbionMAQC.31561	0	.	62319350	62321052	0	1	1702	0
chr17	62319384	62320442	H9_polyA+.32046	0	.	62319384	62320442	0	1	1058	0
chr17	62376471	62378362	REMC_LuminalBreast.71637	0	.	62376471	62378362	0	1	1891	0
chr17	62376583	62377895	MCF7_Burge_Thompson.22758	0	.	62376583	62377895	0	1	1312	0
chr17	62377011	62377736	prostate_carcinoma.70739	0	.	62377011	62377736	0	1	725	0
chr17	62377286	62378343	BT474_Burge_Thompson.24575	0	.	62377286	62378343	0	1	1057	0
chr17	62377445	62377876	A549_Myers.60549	0	.	62377445	62377876	0	1	431	0
chr17	62383650	62385444	prostate_carcinoma.70740	0	.	62383650	62385444	0	1	1794	0
chr17	62384855	62385397	BT474_Burge_Thompson.24582	0	.	62384855	62385397	0	1	542	0
chr17	62384982	62390282	T47D_Burge_Thompson.21034	0	+	62384982	62390282	0	2	260,829	0,4471
chr17	62385549	62387867	BT474_Burge_Thompson.24583	0	.	62385549	62387867	0	1	2318	0
chr17	62385549	62387706	prostate_carcinoma.70741	0	.	62385549	62387706	0	1	2157	0
chr17	62386964	62387798	T47D_Burge_Thompson.21036	0	.	62386964	62387798	0	1	834	0
chr17	62387026	62387847	H1_polyA+.83273	0	.	62387026	62387847	0	1	821	0
chr17	62388764	62389289	prostate_normal.41670	0	.	62388764	62389289	0	1	525	0
chr17	62388765	62390065	BT474_Burge_Thompson.24584	0	.	62388765	62390065	0	1	1300	0
chr17	62388966	62389316	T47D_Burge_Thompson.21037	0	.	62388966	62389316	0	1	350	0
chr17	62390007	62390428	A549_Myers.60556	0	.	62390007	62390428	0	1	421	0
chr17	62485893	62486350	B_cells_Cheung.138937	0	.	62485893	62486350	0	1	457	0
chr17	62488980	62489432	B_cells_Cheung.138941	0	.	62488980	62489432	0	1	452	0
chr17	62673090	62674239	MIP101.49213	0	.	62673090	62674239	0	1	1149	0
chr17	62673100	62674378	B_cells_Cheung.138946	0	.	62673100	62674378	0	1	1278	0
chr17	62673572	62674115	prostate_carcinoma.70790	0	.	62673572	62674115	0	1	543	0
chr17	62685127	62685768	B_cells_Cheung.138957	0	.	62685127	62685768	0	1	641	0
chr17	62761239	62762761	REMC_LuminalBreast.71769	0	.	62761239	62762761	0	1	1522	0
chr17	62800748	62801769	B_cells_Cheung.138982	0	.	62800748	62801769	0	1	1021	0
chr17	63125120	63125751	CD4_Plagnol_resting.45190	0	.	63125120	63125751	0	1	631	0
chr17	63125132	63127169	B_cells_Cheung.139179	0	.	63125132	63127169	0	1	2037	0
chr17	63172178	63174082	REMC_MyoepithelialBreast.66594	0	.	63172178	63174082	0	1	1904	0
chr17	63178811	63180413	REMC_MyoepithelialBreast.66596	0	.	63178811	63180413	0	1	1602	0
chr17	63476070	63477003	REMC_BreastStem.36527	0	.	63476070	63477003	0	1	933	0
chr17	63476507	63477007	REMC_MyoepithelialBreast.66637	0	.	63476507	63477007	0	1	500	0
chr17	63602745	63603723	REMC_LuminalBreast.71870	0	.	63602745	63603723	0	1	978	0
chr17	63608997	63609818	A549_Myers.60682	0	.	63608997	63609818	0	1	821	0
chr17	63609331	63609873	CD4_Plagnol_resting.45258	0	.	63609331	63609873	0	1	542	0
chr17	63609338	63609821	BT474_Burge_Thompson.24630	0	.	63609338	63609821	0	1	483	0
chr17	63609341	63610017	B_cells_Cheung.139206	0	.	63609341	63610017	0	1	676	0
chr17	63609341	63609822	H1_polyA+.83643	0	.	63609341	63609822	0	1	481	0
chr17	63609341	63609833	MDAMB468_Thompson.17285	0	.	63609341	63609833	0	1	492	0
chr17	63609342	63609800	brain_AmbionMAQC.31622	0	.	63609342	63609800	0	1	458	0
chr17	63609348	63609873	HeLa_polyA+_Chen.26017	0	.	63609348	63609873	0	1	525	0
chr17	63609348	63609827	T47D_Burge_Thompson.21091	0	.	63609348	63609827	0	1	479	0
chr17	63609357	63609832	MDAMB231_Thompson.16035	0	.	63609357	63609832	0	1	475	0
chr17	63609389	63610013	REMC_BreastStem.36533	0	.	63609389	63610013	0	1	624	0
chr17	63613254	63617364	REMC_LuminalBreast.71875	0	.	63613254	63617364	0	1	4110	0
chr17	63613895	63615861	REMC_MyoepithelialBreast.66642	0	.	63613895	63615861	0	1	1966	0
chr17	63614100	63614534	B_Cells_Pritchard.2302665	0	-	63614100	63614534	0	1	434	0
chr17	63614122	63615274	H1_polyA+.83645	0	.	63614122	63615274	0	1	1152	0
chr17	63614145	63614525	B_cells_Cheung.139211	0	.	63614145	63614525	0	1	380	0
chr17	63623759	63624267	REMC_MyoepithelialBreast.66646	0	.	63623759	63624267	0	1	508	0
chr17	63626927	63630053	REMC_MyoepithelialBreast.66649	0	.	63626927	63630053	0	1	3126	0
chr17	63627035	63629940	H1_polyA+.83649	0	.	63627035	63629940	0	1	2905	0
chr17	63627427	63629525	B_cells_Cheung.139220	0	.	63627427	63629525	0	1	2098	0
chr17	63628482	63629031	ZR751_Thompson.17437	0	.	63628482	63629031	0	1	549	0
chr17	63628506	63629091	MeWo_Garraway.25925	0	.	63628506	63629091	0	1	585	0
chr17	63628511	63629469	CD4_Plagnol_resting.45268	0	.	63628511	63629469	0	1	958	0
chr17	63629228	63629980	melanoma_Garraway_short_term_cultures.48981	0	.	63629228	63629980	0	1	752	0
chr17	63629560	63629993	CD4_Plagnol_activated.46564	0	.	63629560	63629993	0	1	433	0
chr17	63629616	63629987	B_cells_Cheung.139221	0	.	63629616	63629987	0	1	371	0
chr17	63630090	63630720	HeLa_polyA+_Chen.26021	0	.	63630090	63630720	0	1	630	0
chr17	63630127	63631384	REMC_MyoepithelialBreast.66650	0	.	63630127	63631384	0	1	1257	0
chr17	63630142	63630474	MCF7_Burge_Thompson.22830	0	.	63630142	63630474	0	1	332	0
chr17	63630143	63631261	ZR751_Thompson.17438	0	.	63630143	63631261	0	1	1118	0
chr17	63630143	63631262	B_cells_Cheung.139222	0	.	63630143	63631262	0	1	1119	0
chr17	63630144	63630651	BT474_Burge_Thompson.24635	0	.	63630144	63630651	0	1	507	0
chr17	63630147	63630651	CD4_Plagnol_activated.46565	0	.	63630147	63630651	0	1	504	0
chr17	63636259	63643600	A549_Myers.60688	0	-	63636259	63643600	0	2	129,1036	0,6305
chr17	63636323	63643588	prostate_normal.41757	0	-	63636323	63643588	0	2	207,817	0,6448
chr17	63637460	63643725	HepG2_Caltech_ENCODE.26593	0	.	63637460	63643725	0	1	6265	0
chr17	63637471	63644109	H1_polyA+.83651	0	.	63637471	63644109	0	1	6638	0
chr17	63640685	63643640	B_Cells_Pritchard.2302749	0	-	63640685	63643640	0	1	2955	0
chr17	63640828	63651858	H9_polyA+.32138	0	-	63640828	63651858	0	2	1551,84	0,10946
chr17	63640828	63642402	H9_polyA+.32134	0	.	63640828	63642402	0	1	1574	0
chr17	63640877	63643591	brain_AmbionMAQC.31681	0	.	63640877	63643591	0	1	2714	0
chr17	63640935	63643663	HIT000016017	0	-	63640935	63643663	0	1	2728	0
chr17	63640979	63641426	liver_polyA+.96626	0	.	63640979	63641426	0	1	447	0
chr17	63640998	63643654	HeLa_polyA+_Chen.26025	0	.	63640998	63643654	0	1	2656	0
chr17	63641012	63643640	CD4_Plagnol_resting.45265	0	.	63641012	63643640	0	1	2628	0
chr17	63641021	63643678	B_cells_Cheung.139229	0	.	63641021	63643678	0	1	2657	0
chr17	63641024	63643630	CD4_Plagnol_activated.46571	0	.	63641024	63643630	0	1	2606	0
chr17	63641025	63641769	T47D_Burge_Thompson.21109	0	.	63641025	63641769	0	1	744	0
chr17	63641028	63643646	MCF10A_Thompson.15475	0	.	63641028	63643646	0	1	2618	0
chr17	63641032	63642747	prostate_normal.41755	0	.	63641032	63642747	0	1	1715	0
chr17	63641038	63642925	ZR751_Thompson.17435	0	.	63641038	63642925	0	1	1887	0
chr17	63641053	63643585	MDAMB231_Thompson.16049	0	.	63641053	63643585	0	1	2532	0
chr17	63641075	63643640	BT474_Burge_Thompson.24633	0	.	63641075	63643640	0	1	2565	0
chr17	63641353	63643650	H9_polyA+.32137	0	+	63641353	63643650	0	2	91,802	0,1495
chr17	63641478	63643620	liver_polyA+.96629	0	-	63641478	63643620	0	2	846,420	0,1722
chr17	63641478	63642733	liver_polyA+.96627	0	.	63641478	63642733	0	1	1255	0
chr17	63641690	63642924	BT20_Thompson.15598	0	.	63641690	63642924	0	1	1234	0
chr17	63641705	63642507	colon_Burge.27458	0	.	63641705	63642507	0	1	802	0
chr17	63641727	63642403	lymph_node_Burge.36029	0	.	63641727	63642403	0	1	676	0
chr17	63641728	63642071	breast_Burge.29208	0	.	63641728	63642071	0	1	343	0
chr17	63641751	63643659	HIT000017665	0	-	63641751	63643659	0	1	1908	0
chr17	63641769	63643646	T47D_Burge_Thompson.21097	0	.	63641769	63643646	0	1	1877	0
chr17	63641917	63643452	K562.32044	0	.	63641917	63643452	0	1	1535	0
chr17	63641948	63643716	MDAMB468_Thompson.17288	0	.	63641948	63643716	0	1	1768	0
chr17	63642153	63643573	MeWo_Garraway.25933	0	.	63642153	63643573	0	1	1420	0
chr17	63642247	63643664	melanoma_Garraway_short_term_cultures.48987	0	.	63642247	63643664	0	1	1417	0
chr17	63642461	63643504	lymph_node_Burge.36020	0	.	63642461	63643504	0	1	1043	0
chr17	63642814	63643650	H9_polyA+.32136	0	.	63642814	63643650	0	1	836	0
chr17	63643108	63643435	adipose_Burge.28153	0	.	63643108	63643435	0	1	327	0
chr17	63646212	63647112	B_cells_Cheung.139232	0	.	63646212	63647112	0	1	900	0
chr17	63646291	63646757	brain_AmbionMAQC.31634	0	.	63646291	63646757	0	1	466	0
chr17	63647577	63653502	REMC_MyoepithelialBreast.66655	0	.	63647577	63653502	0	1	5925	0
chr17	63650980	63654742	REMC_BreastStem.36554	0	.	63650980	63654742	0	1	3762	0
chr17	63653839	63658714	REMC_LuminalBreast.71884	0	.	63653839	63658714	0	1	4875	0
chr17	63654957	63658167	REMC_MyoepithelialBreast.66657	0	.	63654957	63658167	0	1	3210	0
chr17	63657238	63659046	pHIT000030044	0	-	63657238	63659046	0	2	1143,408	0,1400
chr17	63657285	63657829	B_cells_Cheung.139235	0	.	63657285	63657829	0	1	544	0
chr17	63657289	63661338	REMC_BreastStem.36556	0	.	63657289	63661338	0	1	4049	0
chr17	63658276	63661116	REMC_MyoepithelialBreast.66658	0	.	63658276	63661116	0	1	2840	0
chr17	63658769	63661327	REMC_LuminalBreast.71885	0	.	63658769	63661327	0	1	2558	0
chr17	63661514	63670761	REMC_LuminalBreast.71886	0	.	63661514	63670761	0	1	9247	0
chr17	63662749	63667726	REMC_BreastStem.36558	0	.	63662749	63667726	0	1	4977	0
chr17	63663102	63665139	REMC_MyoepithelialBreast.66660	0	.	63663102	63665139	0	1	2037	0
chr17	63663816	63664945	H1_polyA+.83655	0	.	63663816	63664945	0	1	1129	0
chr17	63664377	63664789	prostate_carcinoma.71007	0	.	63664377	63664789	0	1	412	0
chr17	63668275	63673638	prostate_carcinoma.71011	0	-	63668275	63673638	0	2	145,665	0,4698
chr17	63670827	63673577	REMC_BreastStem.36560	0	.	63670827	63673577	0	1	2750	0
chr17	63674231	63676765	REMC_MyoepithelialBreast.66666	0	.	63674231	63676765	0	1	2534	0
chr17	63674261	63675652	B_cells_Cheung.139248	0	.	63674261	63675652	0	1	1391	0
chr17	63674306	63674659	CD4_Plagnol_activated.46573	0	.	63674306	63674659	0	1	353	0
chr17	63680947	63682427	REMC_BreastStem.36577	0	.	63680947	63682427	0	1	1480	0
chr17	63681634	63685528	REMC_LuminalBreast.71892	0	.	63681634	63685528	0	1	3894	0
chr17	63682346	63684285	REMC_MyoepithelialBreast.66668	0	.	63682346	63684285	0	1	1939	0
chr17	63683201	63685517	REMC_BreastStem.36579	0	.	63683201	63685517	0	1	2316	0
chr17	63683253	63684072	brain_AmbionMAQC.31652	0	.	63683253	63684072	0	1	819	0
chr17	63683357	63684101	MCF7_Burge_Thompson.22835	0	.	63683357	63684101	0	1	744	0
chr17	63683633	63684237	CD4_Plagnol_resting.45314	0	.	63683633	63684237	0	1	604	0
chr17	63684197	63684912	brain_AmbionMAQC.31653	0	.	63684197	63684912	0	1	715	0
chr17	63684382	63685372	REMC_MyoepithelialBreast.66669	0	.	63684382	63685372	0	1	990	0
chr17	63684435	63685270	H1_polyA+.83658	0	.	63684435	63685270	0	1	835	0
chr17	63684579	63684957	B_cells_Cheung.139251	0	.	63684579	63684957	0	1	378	0
chr17	63686342	63687801	REMC_MyoepithelialBreast.66670	0	.	63686342	63687801	0	1	1459	0
chr17	63688431	63690384	B_cells_Cheung.139253	0	.	63688431	63690384	0	1	1953	0
chr17	63688477	63695337	B_Cells_Pritchard.2302919	0	+	63688477	63695337	0	5	433,40,2365,428,669	0,1091,1850,4216,6191
chr17	63689542	63699202	REMC_LuminalBreast.71895	0	+	63689542	63699202	0	2	540,1623	0,8037
chr17	63689989	63691168	REMC_BreastStem.36581	0	.	63689989	63691168	0	1	1179	0
chr17	63690443	63695253	B_cells_Cheung.139254	0	.	63690443	63695253	0	1	4810	0
chr17	63690457	63691332	CD4_Plagnol_resting.45318	0	.	63690457	63691332	0	1	875	0
chr17	63690461	63691419	CD4_Plagnol_activated.46575	0	.	63690461	63691419	0	1	958	0
chr17	63690470	63691663	prostate_carcinoma.71025	0	.	63690470	63691663	0	1	1193	0
chr17	63690475	63692505	REMC_LuminalBreast.71896	0	.	63690475	63692505	0	1	2030	0
chr17	63690478	63691323	prostate_normal.41769	0	.	63690478	63691323	0	1	845	0
chr17	63690495	63692257	REMC_MyoepithelialBreast.66672	0	.	63690495	63692257	0	1	1762	0
chr17	63692555	63693026	REMC_LuminalBreast.71897	0	.	63692555	63693026	0	1	471	0
chr17	63692576	63693005	CD4_Plagnol_resting.45319	0	.	63692576	63693005	0	1	429	0
chr17	63697619	63700558	HIT000097822	0	+	63697619	63700558	0	1	2939	0
chr17	63704388	63705992	CD4_Plagnol_resting.45317	0	.	63704388	63705992	0	1	1604	0
chr17	63704535	63705088	T47D_Burge_Thompson.21110	0	.	63704535	63705088	0	1	553	0
chr17	63708416	63708809	brain_AmbionMAQC.31679	0	.	63708416	63708809	0	1	393	0
chr17	63711501	63712718	REMC_LuminalBreast.71901	0	.	63711501	63712718	0	1	1217	0
chr17	63712564	63713042	B_cells_Cheung.139268	0	.	63712564	63713042	0	1	478	0
chr17	63712930	63713462	REMC_LuminalBreast.71902	0	.	63712930	63713462	0	1	532	0
chr17	63712968	63713719	A549_Myers.60701	0	.	63712968	63713719	0	1	751	0
chr17	63713079	63713974	brain_AmbionMAQC.31702	0	.	63713079	63713974	0	1	895	0
chr17	63713094	63713973	CD4_Plagnol_resting.45325	0	.	63713094	63713973	0	1	879	0
chr17	63713158	63713974	CD4_Plagnol_activated.46618	0	.	63713158	63713974	0	1	816	0
chr17	63713160	63713979	B_cells_Cheung.139269	0	.	63713160	63713979	0	1	819	0
chr17	63713180	63716892	H1_polyA+.83659	0	.	63713180	63716892	0	1	3712	0
chr17	63713180	63713936	MIP101.49256	0	.	63713180	63713936	0	1	756	0
chr17	63713186	63713966	H9_polyA+.32139	0	.	63713186	63713966	0	1	780	0
chr17	63713194	63713961	MCF7_Burge_Thompson.22838	0	.	63713194	63713961	0	1	767	0
chr17	63713195	63713975	HepG2_Caltech_ENCODE.26579	0	.	63713195	63713975	0	1	780	0
chr17	63713195	63713975	HepG2_Caltech_ENCODE.26580	0	-	63713195	63713975	0	2	178,147	0,633
chr17	63713216	63713926	CD4_Snyder.53617	0	.	63713216	63713926	0	1	710	0
chr17	63713218	63713936	prostate_normal.41777	0	.	63713218	63713936	0	1	718	0
chr17	63713224	63715209	HIT000282650	0	+	63713224	63715209	0	1	1985	0
chr17	63713226	63713956	melanoma_Garraway_short_term_cultures.48988	0	.	63713226	63713956	0	1	730	0
chr17	63713239	63713950	MDAMB231_Thompson.16051	0	.	63713239	63713950	0	1	711	0
chr17	63713488	63713948	ZR751_Thompson.17453	0	.	63713488	63713948	0	1	460	0
chr17	63713521	63713965	prostate_carcinoma.71040	0	.	63713521	63713965	0	1	444	0
chr17	63713529	63713941	lymph_node_Burge.36013	0	.	63713529	63713941	0	1	412	0
chr17	63713540	63713929	MCF10A_Thompson.15489	0	.	63713540	63713929	0	1	389	0
chr17	63713545	63713973	HeLa_polyA+_Chen.26027	0	.	63713545	63713973	0	1	428	0
chr17	63713557	63717273	REMC_MyoepithelialBreast.66680	0	.	63713557	63717273	0	1	3716	0
chr17	63713558	63723485	REMC_LuminalBreast.72070	0	.	63713558	63723485	0	1	9927	0
chr17	63713585	63713979	T47D_Burge_Thompson.21114	0	.	63713585	63713979	0	1	394	0
chr17	63713617	63713976	H1_rRNA-depleted_UCSD_REMC.62446	0	.	63713617	63713976	0	1	359	0
chr17	63713741	63714071	K562.32050	0	.	63713741	63714071	0	1	330	0
chr17	63714071	63715137	CD4_Plagnol_resting.45326	0	.	63714071	63715137	0	1	1066	0
chr17	63714072	63715896	B_cells_Cheung.139270	0	.	63714072	63715896	0	1	1824	0
chr17	63714089	63715871	HepG2_Caltech_ENCODE.26581	0	.	63714089	63715871	0	1	1782	0
chr17	63714110	63715297	HeLa_polyA+_Chen.26028	0	.	63714110	63715297	0	1	1187	0
chr17	63714137	63715211	prostate_carcinoma.71041	0	.	63714137	63715211	0	1	1074	0
chr17	63714146	63715494	melanoma_Garraway_short_term_cultures.48989	0	.	63714146	63715494	0	1	1348	0
chr17	63714146	63715850	CD4_Plagnol_activated.46622	0	.	63714146	63715850	0	1	1704	0
chr17	63714146	63725043	CD4_Plagnol_activated.46621	0	-	63714146	63725043	0	2	1601,72	0,10825
chr17	63714150	63715137	brain_AmbionMAQC.31703	0	.	63714150	63715137	0	1	987	0
chr17	63714153	63714884	K562.32051	0	.	63714153	63714884	0	1	731	0
chr17	63714154	63715137	MCF7_Burge_Thompson.22839	0	.	63714154	63715137	0	1	983	0
chr17	63714165	63715198	MeWo_Garraway.25946	0	.	63714165	63715198	0	1	1033	0
chr17	63714172	63715193	H9_polyA+.32140	0	.	63714172	63715193	0	1	1021	0
chr17	63714173	63715436	MIP101.49257	0	.	63714173	63715436	0	1	1263	0
chr17	63714203	63715122	prostate_normal.41779	0	.	63714203	63715122	0	1	919	0
chr17	63715188	63715921	CD4_Plagnol_resting.45327	0	.	63715188	63715921	0	1	733	0
chr17	63715255	63715968	brain_AmbionMAQC.31704	0	.	63715255	63715968	0	1	713	0
chr17	63715278	63715856	MCF7_Burge_Thompson.22840	0	.	63715278	63715856	0	1	578	0
chr17	63716003	63716742	HeLa_polyA+_Chen.26029	0	.	63716003	63716742	0	1	739	0
chr17	63716027	63717040	HepG2_Caltech_ENCODE.26582	0	.	63716027	63717040	0	1	1013	0
chr17	63716028	63716615	B_cells_Cheung.139271	0	.	63716028	63716615	0	1	587	0
chr17	63716083	63716830	brain_AmbionMAQC.31705	0	.	63716083	63716830	0	1	747	0
chr17	63716097	63716802	REMC_BreastStem.36587	0	.	63716097	63716802	0	1	705	0
chr17	63716176	63716828	H9_polyA+.32141	0	.	63716176	63716828	0	1	652	0
chr17	63716188	63716601	MCF7_Burge_Thompson.22841	0	.	63716188	63716601	0	1	413	0
chr17	63716257	63717050	CD4_Plagnol_activated.46623	0	.	63716257	63717050	0	1	793	0
chr17	63716286	63716929	melanoma_Garraway_short_term_cultures.48990	0	.	63716286	63716929	0	1	643	0
chr17	63716530	63716859	prostate_carcinoma.71042	0	.	63716530	63716859	0	1	329	0
chr17	63717923	63718264	HeLa_polyA+_Chen.26030	0	.	63717923	63718264	0	1	341	0
chr17	63735391	63736029	REMC_LuminalBreast.72076	0	.	63735391	63736029	0	1	638	0
chr17	63735395	63736316	melanoma_Garraway_short_term_cultures.48996	0	.	63735395	63736316	0	1	921	0
chr17	63735487	63736004	B_cells_Cheung.139294	0	.	63735487	63736004	0	1	517	0
chr17	63735492	63736012	H1_polyA+.83672	0	.	63735492	63736012	0	1	520	0
chr17	63735494	63737257	REMC_MyoepithelialBreast.66690	0	.	63735494	63737257	0	1	1763	0
chr17	63736509	63737838	melanoma_Garraway_short_term_cultures.48997	0	.	63736509	63737838	0	1	1329	0
chr17	63736521	63737877	H1_polyA+.83673	0	.	63736521	63737877	0	1	1356	0
chr17	63736526	63736980	B_cells_Cheung.139295	0	.	63736526	63736980	0	1	454	0
chr17	63736528	63737115	REMC_BreastStem.36588	0	.	63736528	63737115	0	1	587	0
chr17	63736544	63736955	prostate_carcinoma.71044	0	.	63736544	63736955	0	1	411	0
chr17	63737357	63738296	REMC_MyoepithelialBreast.66691	0	.	63737357	63738296	0	1	939	0
chr17	63740563	63740990	B_Cells_Pritchard.2302997	0	+	63740563	63740990	0	1	427	0
chr17	63743291	63744383	REMC_MyoepithelialBreast.66694	0	.	63743291	63744383	0	1	1092	0
chr17	63743300	63743637	H1_polyA+.83677	0	.	63743300	63743637	0	1	337	0
chr17	63743301	63743719	B_cells_Cheung.139302	0	.	63743301	63743719	0	1	418	0
chr17	63743315	63743810	brain_AmbionMAQC.31712	0	.	63743315	63743810	0	1	495	0
chr17	63744598	63747649	REMC_MyoepithelialBreast.66695	0	.	63744598	63747649	0	1	3051	0
chr17	64112649	64113560	H1_polyA+.83796	0	.	64112649	64113560	0	1	911	0
chr17	64129922	64131064	H1_polyA+.83801	0	.	64129922	64131064	0	1	1142	0
chr17	64130032	64130343	H1_rRNA-depleted_UCSD_REMC.62481	0	.	64130032	64130343	0	1	311	0
chr17	64134871	64136510	H1_polyA+.83748	0	.	64134871	64136510	0	1	1639	0
chr17	64157646	64158527	liver_polyA+.96734	0	.	64157646	64158527	0	1	881	0
chr17	64157646	64173837	liver_polyA+.96733	0	-	64157646	64173837	0	3	154,627,163	0,254,16028
chr17	64157646	64158516	kidney_Gilad.62588	0	-	64157646	64158516	0	2	154,616	0,254
chr17	64157801	64158516	kidney_Gilad.62589	0	.	64157801	64158516	0	1	715	0
chr17	64275978	64276613	B_Cells_Pritchard.2304585	0	.	64275978	64276613	0	1	635	0
chr17	64301186	64302301	HepG2_Caltech_ENCODE.26618	0	.	64301186	64302301	0	1	1115	0
chr17	64325029	64327634	liver_polyA+.96801	0	.	64325029	64327634	0	1	2605	0
chr17	64325073	64328936	HepG2_Caltech_ENCODE.26624	0	.	64325073	64328936	0	1	3863	0
chr17	64325111	64327632	kidney_Gilad.62618	0	.	64325111	64327632	0	1	2521	0
chr17	64330768	64331097	liver_polyA+.96807	0	.	64330768	64331097	0	1	329	0
chr17	64347863	64348841	HepG2_Caltech_ENCODE.26625	0	.	64347863	64348841	0	1	978	0
chr17	65076931	65107885	pHIT000030063	0	-	65076931	65107885	0	5	144,57,95,57,10	0,1546,5980,12313,30944
chr17	65102502	65136088	HIT000335092	0	+	65102502	65136088	0	3	174,83,2847	0,29903,30739
chr17	65102502	65136087	HIT000263139	0	+	65102502	65136087	0	3	174,83,2846	0,29903,30739
chr17	65102520	65136087	ENST00000433856	0	+	65102520	65136087	0	3	156,83,2846	0,29885,30721
chr17	65498366	65531592	K562.32138	0	-	65498366	65531592	0	7	872,242,55,91,4410,130,1778	0,4721,5540,6116,23850,28832,31448
chr17	65516074	65519215	K562.32148	0	.	65516074	65519215	0	1	3141	0
chr17	65519402	65519799	K562.32149	0	.	65519402	65519799	0	1	397	0
chr17	65547716	65550842	K562.32152	0	.	65547716	65550842	0	1	3126	0
chr17	65566695	65568832	K562.32108	0	.	65566695	65568832	0	1	2137	0
chr17	65570476	65571479	K562.32110	0	.	65570476	65571479	0	1	1003	0
chr17	65697010	65697570	brain_AmbionMAQC.31789	0	.	65697010	65697570	0	1	560	0
chr17	65749203	65773132	pHIT000117613	0	+	65749203	65773132	0	2	252,138	0,23791
chr17	66953956	67027687	pHIT000091337	0	+	66953956	67027687	0	5	6,106,88,121,136	0,17772,56416,68756,73595
chr17	66953956	67024565	pHIT000030064	0	+	66953956	67024565	0	5	6,106,88,121,60	0,17772,56416,68756,70549
chr17	67338316	67339129	B_cells_Cheung.139636	0	.	67338316	67339129	0	1	813	0
chr17	67339447	67340729	B_cells_Cheung.139637	0	.	67339447	67340729	0	1	1282	0
chr17	67366771	67367688	B_cells_Cheung.139646	0	.	67366771	67367688	0	1	917	0
chr17	67373580	67374063	B_cells_Cheung.139645	0	.	67373580	67374063	0	1	483	0
chr17	67403785	67404335	B_Cells_Pritchard.2311327	0	.	67403785	67404335	0	1	550	0
chr17	67432499	67432960	B_Cells_Pritchard.2311453	0	.	67432499	67432960	0	1	461	0
chr17	67446225	67447363	B_Cells_Pritchard.2311509	0	.	67446225	67447363	0	1	1138	0
chr17	67450287	67451819	B_Cells_Pritchard.2311529	0	.	67450287	67451819	0	1	1532	0
chr17	67450290	67450679	B_cells_Cheung.139667	0	.	67450290	67450679	0	1	389	0
chr17	67472251	67473566	REMC_LuminalBreast.72178	0	.	67472251	67473566	0	1	1315	0
chr17	67476867	67477448	B_Cells_Pritchard.2311629	0	.	67476867	67477448	0	1	581	0
chr17	67479850	67481558	REMC_LuminalBreast.72180	0	.	67479850	67481558	0	1	1708	0
chr17	67481990	67484476	REMC_LuminalBreast.72181	0	.	67481990	67484476	0	1	2486	0
chr17	67482098	67484504	B_Cells_Pritchard.2311657	0	.	67482098	67484504	0	1	2406	0
chr17	67482469	67484780	B_cells_Cheung.139680	0	.	67482469	67484780	0	1	2311	0
chr17	67511107	67513779	B_cells_Cheung.139704	0	.	67511107	67513779	0	1	2672	0
chr17	67511163	67528310	B_Cells_Pritchard.2311789	0	-	67511163	67528310	0	2	1910,70	0,17077
chr17	67523663	67524912	REMC_LuminalBreast.72215	0	.	67523663	67524912	0	1	1249	0
chr17	67536016	67544904	B_cells_Cheung.139714	0	+	67536016	67544904	0	2	2571,124	0,8764
chr17	67536745	67538652	MIP101.49369	0	.	67536745	67538652	0	1	1907	0
chr17	67537911	67545881	B_Cells_Pritchard.2311881	0	+	67537911	67545881	0	3	676,87,141	0,6869,7829
chr17	67538225	67545875	MIP101.49370	0	+	67538225	67545875	0	3	362,87,135	0,6555,7515
chr17	67551719	67552391	REMC_LuminalBreast.72223	0	.	67551719	67552391	0	1	672	0
chr17	67551896	67552592	B_cells_Cheung.139721	0	.	67551896	67552592	0	1	696	0
chr17	67552020	67552442	B_Cells_Pritchard.2311811	0	.	67552020	67552442	0	1	422	0
chr17	67560777	67561612	B_cells_Cheung.139723	0	.	67560777	67561612	0	1	835	0
chr17	67564558	67565847	REMC_MyoepithelialBreast.66810	0	.	67564558	67565847	0	1	1289	0
chr17	67578662	67591887	HepG2_Caltech_ENCODE.26641	0	-	67578662	67591887	0	5	305,3631,121,279,246	0,3582,10994,11195,12979
chr17	67580067	67601217	Rinn_00025197	0	+	67580067	67601217	0	6	511,98,186,131,590,553	0,4880,9617,11499,16754,20597
chr17	67582090	67584881	MIP101.49379	0	.	67582090	67584881	0	1	2791	0
chr17	67583536	67584556	MDAMB468_Thompson.17320	0	.	67583536	67584556	0	1	1020	0
chr17	67583588	67585930	prostate_carcinoma.71318	0	.	67583588	67585930	0	1	2342	0
chr17	67586715	67589061	REMC_LuminalBreast.72672	0	.	67586715	67589061	0	1	2346	0
chr17	67586719	67588226	REMC_MyoepithelialBreast.66813	0	.	67586719	67588226	0	1	1507	0
chr17	67586778	67589016	MIP101.49382	0	.	67586778	67589016	0	1	2238	0
chr17	67586824	67588000	HepG2_Caltech_ENCODE.26642	0	.	67586824	67588000	0	1	1176	0
chr17	67591602	67595092	MIP101.49384	0	-	67591602	67595092	0	2	162,2367	0,1123
chr17	67592029	67594998	HepG2_Caltech_ENCODE.26643	0	.	67592029	67594998	0	1	2969	0
chr17	67592732	67593193	B_Cells_Pritchard.2311929	0	.	67592732	67593193	0	1	461	0
chr17	67593482	67594124	REMC_MyoepithelialBreast.66816	0	.	67593482	67594124	0	1	642	0
chr17	67593713	67594910	prostate_carcinoma.71319	0	.	67593713	67594910	0	1	1197	0
chr17	67593768	67594928	H1_polyA+.83820	0	.	67593768	67594928	0	1	1160	0
chr17	67593828	67594216	REMC_LuminalBreast.72673	0	.	67593828	67594216	0	1	388	0
chr17	67602202	67602969	MIP101.49387	0	.	67602202	67602969	0	1	767	0
chr17	67605567	67606381	REMC_MyoepithelialBreast.66819	0	.	67605567	67606381	0	1	814	0
chr17	67611649	67613477	B_cells_Cheung.139739	0	.	67611649	67613477	0	1	1828	0
chr17	67611710	67613500	B_Cells_Pritchard.2312051	0	.	67611710	67613500	0	1	1790	0
chr17	67612024	67613483	MIP101.49392	0	.	67612024	67613483	0	1	1459	0
chr17	67612581	67613445	prostate_carcinoma.71322	0	.	67612581	67613445	0	1	864	0
chr17	67612582	67627455	prostate_carcinoma.71323	0	+	67612582	67627455	0	2	564,78	0,14795
chr17	67613592	67614757	HepG2_Caltech_ENCODE.26645	0	.	67613592	67614757	0	1	1165	0
chr17	67613883	67615402	MIP101.49393	0	.	67613883	67615402	0	1	1519	0
chr17	67614267	67615210	B_Cells_Pritchard.2312059	0	.	67614267	67615210	0	1	943	0
chr17	67614547	67616448	prostate_carcinoma.71325	0	.	67614547	67616448	0	1	1901	0
chr17	67616049	67616464	B_cells_Cheung.139742	0	.	67616049	67616464	0	1	415	0
chr17	67621709	67622126	B_Cells_Pritchard.2312077	0	.	67621709	67622126	0	1	417	0
chr17	67621741	67624268	MIP101.49396	0	.	67621741	67624268	0	1	2527	0
chr17	67622254	67623194	B_Cells_Pritchard.2312081	0	.	67622254	67623194	0	1	940	0
chr17	67622548	67623211	REMC_MyoepithelialBreast.66821	0	.	67622548	67623211	0	1	663	0
chr17	67624703	67625229	REMC_MyoepithelialBreast.66822	0	.	67624703	67625229	0	1	526	0
chr17	67624841	67625568	B_Cells_Pritchard.2312085	0	.	67624841	67625568	0	1	727	0
chr17	67624885	67625391	A549_Myers.60769	0	.	67624885	67625391	0	1	506	0
chr17	67626074	67627352	MIP101.49397	0	.	67626074	67627352	0	1	1278	0
chr17	67626079	67627209	REMC_MyoepithelialBreast.66815	0	.	67626079	67627209	0	1	1130	0
chr17	67635187	67635828	REMC_MyoepithelialBreast.66824	0	.	67635187	67635828	0	1	641	0
chr17	67642409	67643060	MIP101.49692	0	.	67642409	67643060	0	1	651	0
chr17	67643673	67646316	MIP101.49693	0	.	67643673	67646316	0	1	2643	0
chr17	67658849	67661429	MIP101.49411	0	.	67658849	67661429	0	1	2580	0
chr17	67659031	67659411	A549_Myers.60779	0	.	67659031	67659411	0	1	380	0
chr17	67696588	67697248	BT474_Burge_Thompson.24693	0	.	67696588	67697248	0	1	660	0
chr17	67726906	67727667	B_Cells_Pritchard.2312411	0	.	67726906	67727667	0	1	761	0
chr17	67745689	67746080	B_Cells_Pritchard.2312473	0	.	67745689	67746080	0	1	391	0
chr17	67747510	67748146	B_Cells_Pritchard.2312481	0	.	67747510	67748146	0	1	636	0
chr17	67756580	67757206	B_Cells_Pritchard.2312513	0	.	67756580	67757206	0	1	626	0
chr17	67792155	67793362	melanoma_Garraway_short_term_cultures.49108	0	.	67792155	67793362	0	1	1207	0
chr17	67811215	67812302	REMC_LuminalBreast.72234	0	.	67811215	67812302	0	1	1087	0
chr17	67811716	67812436	melanoma_Garraway_short_term_cultures.49111	0	.	67811716	67812436	0	1	720	0
chr17	67832983	67833818	prostate_carcinoma.71200	0	.	67832983	67833818	0	1	835	0
chr17	67833235	67834142	REMC_LuminalBreast.81517	0	.	67833235	67834142	0	1	907	0
chr17	67833516	67835560	melanoma_Garraway_short_term_cultures.49114	0	.	67833516	67835560	0	1	2044	0
chr17	67837099	67837952	REMC_LuminalBreast.81520	0	.	67837099	67837952	0	1	853	0
chr17	67839428	67843446	REMC_LuminalBreast.81521	0	.	67839428	67843446	0	1	4018	0
chr17	67839811	67844086	melanoma_Garraway_short_term_cultures.49118	0	.	67839811	67844086	0	1	4275	0
chr17	67847407	67849046	melanoma_Garraway_short_term_cultures.49120	0	.	67847407	67849046	0	1	1639	0
chr17	67849072	67850411	REMC_LuminalBreast.81524	0	.	67849072	67850411	0	1	1339	0
chr17	67849219	67852665	melanoma_Garraway_short_term_cultures.49121	0	.	67849219	67852665	0	1	3446	0
chr17	67850675	67862872	HIT000013991	0	+	67850675	67862872	0	4	1203,177,221,232	0,10790,11067,11965
chr17	67851087	67852301	REMC_LuminalBreast.81525	0	.	67851087	67852301	0	1	1214	0
chr17	67852301	67854674	REMC_LuminalBreast.81526	0	.	67852301	67854674	0	1	2373	0
chr17	67854750	67855820	REMC_LuminalBreast.81527	0	.	67854750	67855820	0	1	1070	0
chr17	67854788	67856445	melanoma_Garraway_short_term_cultures.49123	0	.	67854788	67856445	0	1	1657	0
chr17	67856025	67856870	REMC_LuminalBreast.81528	0	.	67856025	67856870	0	1	845	0
chr17	67856700	67857567	melanoma_Garraway_short_term_cultures.49124	0	.	67856700	67857567	0	1	867	0
chr17	67857674	67861208	melanoma_Garraway_short_term_cultures.49125	0	.	67857674	67861208	0	1	3534	0
chr17	67864661	67868860	melanoma_Garraway_short_term_cultures.49128	0	.	67864661	67868860	0	1	4199	0
chr17	67868400	67868834	REMC_LuminalBreast.81535	0	.	67868400	67868834	0	1	434	0
chr17	67868403	67868855	B_cells_Cheung.139752	0	.	67868403	67868855	0	1	452	0
chr17	67869019	67871462	REMC_LuminalBreast.81536	0	.	67869019	67871462	0	1	2443	0
chr17	67869093	67873090	melanoma_Garraway_short_term_cultures.49129	0	.	67869093	67873090	0	1	3997	0
chr17	67869430	67870371	REMC_MyoepithelialBreast.66825	0	.	67869430	67870371	0	1	941	0
chr17	67871462	67872603	REMC_LuminalBreast.81537	0	.	67871462	67872603	0	1	1141	0
chr17	67878443	67880759	melanoma_Garraway_short_term_cultures.49134	0	.	67878443	67880759	0	1	2316	0
chr17	67881103	67892206	B_Cells_Pritchard.2312903	0	-	67881103	67892206	0	2	176,170	0,10933
chr17	67881557	67883589	melanoma_Garraway_short_term_cultures.49136	0	.	67881557	67883589	0	1	2032	0
chr17	67883836	67888871	melanoma_Garraway_short_term_cultures.49137	0	.	67883836	67888871	0	1	5035	0
chr17	67889128	67892125	melanoma_Garraway_short_term_cultures.49138	0	.	67889128	67892125	0	1	2997	0
chr17	67890039	67891371	MIP101.49419	0	.	67890039	67891371	0	1	1332	0
chr17	67890510	67891155	B_cells_Cheung.139754	0	.	67890510	67891155	0	1	645	0
chr17	67892036	68100538	Rinn_00025252	0	-	67892036	68100538	0	4	986,64,98,603	0,43934,46826,207899
chr17	67892037	68100538	ENST00000453722	0	-	67892037	68100538	0	4	985,63,97,602	0,43934,46826,207899
chr17	67892037	68100538	HIT000002952	0	-	67892037	68100538	0	5	836,118,63,97,602	0,17002,43934,46826,207899
chr17	67892055	68100538	Rinn_00025151	0	-	67892055	68100538	0	5	818,119,64,98,603	0,16983,43915,46807,207880
chr17	67895279	67896157	MIP101.49420	0	.	67895279	67896157	0	1	878	0
chr17	67896438	67898680	B_cells_Cheung.139861	0	.	67896438	67898680	0	1	2242	0
chr17	67896807	67897842	B_Cells_Pritchard.2312925	0	.	67896807	67897842	0	1	1035	0
chr17	67897118	67897870	MIP101.49421	0	.	67897118	67897870	0	1	752	0
chr17	67898067	67899901	REMC_MyoepithelialBreast.66826	0	.	67898067	67899901	0	1	1834	0
chr17	67898808	67900638	MCF10A_Thompson.15511	0	.	67898808	67900638	0	1	1830	0
chr17	67898867	67901139	B_cells_Cheung.139862	0	.	67898867	67901139	0	1	2272	0
chr17	67898926	67900716	MIP101.49422	0	.	67898926	67900716	0	1	1790	0
chr17	67898933	67899993	MeWo_Garraway.26496	0	.	67898933	67899993	0	1	1060	0
chr17	67899338	68096124	khalil_901	0	.	67899338	68096124	0	89	373,255,173,1175,1634,67,219,738,2201,1520,425,83,641,225,42,1733,651,1041,633,3318,691,815,386,257,184,161,342,322,333,105,479,22,248,2604,1068,475,215,279,61,66,1323,1030,321,179,53,319,276,69,2905,711,67,229,1461,201,1633,3334,396,27,526,1869,452,2073,229,438,2428,777,308,505,299,729,423,478,201,234,644,101,59,171,657,33,142,211,68,155,109,1273,263,301,72	0,728,3585,9200,11616,14746,15660,19389,20574,22922,24722,27931,28939,31229,32028,32513,34281,35863,37467,38360,43312,46681,48642,49287,53035,53628,54750,59302,60654,61280,62664,63759,64049,65796,70131,73433,74003,75710,76428,76857,79868,83835,85006,87342,88564,96405,97069,97708,100900,107642,109892,110104,110340,115894,117801,121137,125093,126139,127061,130597,133641,134146,137594,138242,145738,148365,150367,150770,151444,165607,168591,172618,176126,177681,179202,180023,181329,182571,183285,184301,186822,187160,187712,190080,191248,191542,192908,194968,196714
chr17	67899962	67900598	B_Cells_Pritchard.2312933	0	.	67899962	67900598	0	1	636	0
chr17	67900153	67900641	MB435_Burge.30897	0	.	67900153	67900641	0	1	488	0
chr17	67900233	67900791	brain_AmbionMAQC.31801	0	.	67900233	67900791	0	1	558	0
chr17	67900610	67901142	HepG2_Caltech_ENCODE.26675	0	.	67900610	67901142	0	1	532	0
chr17	67901604	67905034	MIP101.49424	0	.	67901604	67905034	0	1	3430	0
chr17	67902008	67902830	MCF10A_Thompson.15512	0	.	67902008	67902830	0	1	822	0
chr17	67902111	67903342	REMC_MyoepithelialBreast.66828	0	.	67902111	67903342	0	1	1231	0
chr17	67902510	67903684	MeWo_Garraway.26497	0	.	67902510	67903684	0	1	1174	0
chr17	67905141	67906264	melanoma_Garraway_short_term_cultures.49145	0	.	67905141	67906264	0	1	1123	0
chr17	67905329	67906279	HepG2_Caltech_ENCODE.26676	0	.	67905329	67906279	0	1	950	0
chr17	67905629	67906279	MCF10A_Thompson.15514	0	.	67905629	67906279	0	1	650	0
chr17	67906552	67909364	MIP101.49426	0	.	67906552	67909364	0	1	2812	0
chr17	67906640	67910369	REMC_MyoepithelialBreast.66916	0	.	67906640	67910369	0	1	3729	0
chr17	67906973	67918067	melanoma_Garraway_short_term_cultures.49143	0	.	67906973	67918067	0	1	11094	0
chr17	67909659	67918042	MIP101.49427	0	+	67909659	67918042	0	2	2570,34	0,8349
chr17	67910297	68100552	MeWo_Garraway.26502	0	-	67910297	68100552	0	6	2255,265,219,63,97,616	0,18138,20223,25674,28566,189639
chr17	67910687	68100526	Rinn_00025757	0	-	67910687	68100526	0	3	1865,64,591	0,25283,189248
chr17	67910897	67936577	B_cells_Cheung.139856	0	-	67910897	67936577	0	3	1655,265,6057	0,17538,19623
chr17	67910964	67912217	A549_Myers.60793	0	.	67910964	67912217	0	1	1253	0
chr17	67910973	67912557	B_Cells_Pritchard.2313007	0	+	67910973	67912557	0	1	1584	0
chr17	67911020	67912203	H1_polyA+.83825	0	.	67911020	67912203	0	1	1183	0
chr17	67911045	67912561	MDAMB468_Thompson.17332	0	.	67911045	67912561	0	1	1516	0
chr17	67911045	68100528	MDAMB468_Thompson.17331	0	-	67911045	68100528	0	4	1507,63,99,592	0,24926,27818,188891
chr17	67911054	68101607	melanoma_Garraway_short_term_cultures.49142	0	-	67911054	68101607	0	4	1498,3190,97,1671	0,22044,27809,188882
chr17	67911056	68100538	Rinn_00025114	0	-	67911056	68100538	0	4	1496,64,98,603	0,24914,27806,188879
chr17	67911057	68100538	NR_036488	0	-	67911057	68100538	0	4	1495,63,97,602	0,24914,27806,188879
chr17	67911061	67924993	HepG2_Caltech_ENCODE.26679	0	+	67911061	67924993	0	2	1102,8	0,13924
chr17	67911061	67912221	CD4_Plagnol_activated.46657	0	.	67911061	67912221	0	1	1160	0
chr17	67911063	67912066	prostate_normal.41871	0	.	67911063	67912066	0	1	1003	0
chr17	67911063	67912207	ZR751_Thompson.17480	0	.	67911063	67912207	0	1	1144	0
chr17	67911063	68100566	HIT000049034	0	-	67911063	68100566	0	5	1489,63,97,159,178	0,24908,27800,188873,189325
chr17	67911066	67912227	REMC_BreastStem.36714	0	.	67911066	67912227	0	1	1161	0
chr17	67911104	67912210	MCF7_Burge_Thompson.22923	0	.	67911104	67912210	0	1	1106	0
chr17	67911105	67912060	CD4_Plagnol_resting.45491	0	.	67911105	67912060	0	1	955	0
chr17	67911112	67912315	MDAMB231_Thompson.16076	0	.	67911112	67912315	0	1	1203	0
chr17	67911112	67931396	BT20_Thompson.15628	0	-	67911112	67931396	0	4	1440,303,9,876	0,17323,19370,19408
chr17	67911113	67930762	HIT000274783	0	+	67911113	67930762	0	2	1439,242	0,19407
chr17	67911115	67912222	prostate_carcinoma.71219	0	.	67911115	67912222	0	1	1107	0
chr17	67911117	68100547	MCF10A_Thompson.15523	0	-	67911117	68100547	0	4	1435,63,97,611	0,24854,27746,188819
chr17	67911118	67912032	HME_Burge.29441	0	.	67911118	67912032	0	1	914	0
chr17	67911118	67912198	brain_AmbionMAQC.31803	0	.	67911118	67912198	0	1	1080	0
chr17	67911150	67911981	BT474_Burge_Thompson.24695	0	.	67911150	67911981	0	1	831	0
chr17	67911238	67912071	T47D_Burge_Thompson.21177	0	.	67911238	67912071	0	1	833	0
chr17	67911303	67911739	NEC_from_H9.53739	0	.	67911303	67911739	0	1	436	0
chr17	67912283	68100426	REMC_BreastStem.36717	0	-	67912283	68100426	0	4	269,63,97,490	0,23688,26580,187653
chr17	67912383	67928907	MDAMB231_Thompson.16074	0	-	67912383	67928907	0	2	169,472	0,16052
chr17	67912392	67938956	prostate_carcinoma.71221	0	-	67912392	67938956	0	4	160,623,3059,93	0,2290,20773,26471
chr17	67916036	67920178	REMC_LuminalBreast.81539	0	.	67916036	67920178	0	1	4142	0
chr17	67917177	67922415	B_Cells_Pritchard.2313045	0	+	67917177	67922415	0	2	2959,2070	0,3168
chr17	67919293	67920082	prostate_carcinoma.71222	0	.	67919293	67920082	0	1	789	0
chr17	67919585	67919903	A549_Myers.60795	0	.	67919585	67919903	0	1	318	0
chr17	67920339	67922415	B_Cells_Pritchard.2313047	0	-	67920339	67922415	0	1	2076	0
chr17	67920550	67921882	MB435_Burge.30907	0	.	67920550	67921882	0	1	1332	0
chr17	67922639	67923762	MB435_Burge.30908	0	.	67922639	67923762	0	1	1123	0
chr17	67924085	67925729	REMC_MyoepithelialBreast.66921	0	.	67924085	67925729	0	1	1644	0
chr17	67924393	67946220	MB435_Burge.30911	0	-	67924393	67946220	0	4	72,350,463,22	0,10435,15195,21805
chr17	67925410	67930032	B_Cells_Pritchard.2313051	0	+	67925410	67930032	0	2	1278,1594	0,3028
chr17	67928062	67929969	MB435_Burge.30904	0	.	67928062	67929969	0	1	1907	0
chr17	67928195	67936055	melanoma_Garraway_short_term_cultures.49144	0	.	67928195	67936055	0	1	7860	0
chr17	67928440	67929929	prostate_normal.41873	0	.	67928440	67929929	0	1	1489	0
chr17	67928452	68100399	Rinn_00025759	0	-	67928452	68100399	0	3	248,64,464	0,7518,171483
chr17	67928464	67933011	prostate_carcinoma.71220	0	.	67928464	67933011	0	1	4547	0
chr17	67928674	68100523	Rinn_00026155	0	-	67928674	68100523	0	4	26,64,98,588	0,7296,10188,171261
chr17	67930140	67934553	B_cells_Cheung.139857	0	+	67930140	67934553	0	3	1019,155,2958	0,1111,1455
chr17	67930161	67936807	B_Cells_Pritchard.2313741	0	-	67930161	67936807	0	1	6646	0
chr17	67930161	67937459	B_Cells_Pritchard.2313739	0	+	67930161	67937459	0	3	998,155,5864	0,1090,1434
chr17	67931002	67932892	prostate_normal.41874	0	.	67931002	67932892	0	1	1890	0
chr17	67931267	67931910	A549_Myers.60801	0	.	67931267	67931910	0	1	643	0
chr17	67931311	67932817	CD4_Plagnol_resting.45493	0	.	67931311	67932817	0	1	1506	0
chr17	67933114	67934928	MeWo_Garraway.26506	0	.	67933114	67934928	0	1	1814	0
chr17	67933118	67934461	prostate_normal.41875	0	.	67933118	67934461	0	1	1343	0
chr17	67933131	67938742	MB435_Burge.30914	0	-	67933131	67938742	0	2	55,297	0,5314
chr17	67933282	67934424	MB435_Burge.30916	0	.	67933282	67934424	0	1	1142	0
chr17	67934002	67934719	REMC_BreastStem.36718	0	.	67934002	67934719	0	1	717	0
chr17	67934037	67934498	A549_Myers.60804	0	.	67934037	67934498	0	1	461	0
chr17	67934648	67935783	CD4_Plagnol_resting.45494	0	.	67934648	67935783	0	1	1135	0
chr17	67934731	67935562	prostate_normal.41876	0	.	67934731	67935562	0	1	831	0
chr17	67934743	67935283	CD4_Plagnol_activated.46659	0	.	67934743	67935283	0	1	540	0
chr17	67937641	67939229	B_Cells_Pritchard.2313745	0	-	67937641	67939229	0	4	154,124,204,621	0,251,703,967
chr17	67938339	67938662	A549_Myers.60807	0	.	67938339	67938662	0	1	323	0
chr17	67938374	67938742	MB435_Burge.30915	0	.	67938374	67938742	0	1	368	0
chr17	67938871	68100526	brain_AmbionMAQC.31807	0	-	67938871	68100526	0	2	89,590	0,161065
chr17	67939392	67941235	REMC_LuminalBreast.81540	0	.	67939392	67941235	0	1	1843	0
chr17	67939604	67940629	MIP101.49433	0	.	67939604	67940629	0	1	1025	0
chr17	67939605	67941855	melanoma_Garraway_short_term_cultures.49150	0	.	67939605	67941855	0	1	2250	0
chr17	67939616	67940317	prostate_carcinoma.71225	0	.	67939616	67940317	0	1	701	0
chr17	67941286	67961630	REMC_LuminalBreast.81542	0	+	67941286	67961630	0	2	3259,14692	0,5652
chr17	67941286	67961630	REMC_LuminalBreast.81541	0	.	67941286	67961630	0	1	20344	0
chr17	67942647	67947242	B_cells_Cheung.139870	0	.	67942647	67947242	0	1	4595	0
chr17	67942687	67943843	REMC_MyoepithelialBreast.66924	0	.	67942687	67943843	0	1	1156	0
chr17	67942730	67943099	A549_Myers.60809	0	.	67942730	67943099	0	1	369	0
chr17	67948021	67949234	B_cells_Cheung.139871	0	.	67948021	67949234	0	1	1213	0
chr17	67948232	67950258	melanoma_Garraway_short_term_cultures.49156	0	.	67948232	67950258	0	1	2026	0
chr17	67948232	67950245	REMC_MyoepithelialBreast.66926	0	.	67948232	67950245	0	1	2013	0
chr17	67949204	67949921	A549_Myers.60811	0	.	67949204	67949921	0	1	717	0
chr17	67949346	67950257	B_cells_Cheung.139872	0	.	67949346	67950257	0	1	911	0
chr17	67958680	67959708	melanoma_Garraway_short_term_cultures.49161	0	.	67958680	67959708	0	1	1028	0
chr17	67958943	67959409	B_cells_Cheung.139873	0	.	67958943	67959409	0	1	466	0
chr17	67961725	67981137	REMC_LuminalBreast.81543	0	.	67961725	67981137	0	1	19412	0
chr17	67963309	67964387	melanoma_Garraway_short_term_cultures.49164	0	.	67963309	67964387	0	1	1078	0
chr17	67963384	67964372	B_cells_Cheung.139877	0	.	67963384	67964372	0	2	157,213	0,775
chr17	67964522	67969189	B_cells_Cheung.139878	0	.	67964522	67969189	0	1	4667	0
chr17	67966634	67968825	melanoma_Garraway_short_term_cultures.49167	0	.	67966634	67968825	0	1	2191	0
chr17	67967161	67969014	REMC_MyoepithelialBreast.66934	0	.	67967161	67969014	0	1	1853	0
chr17	67967940	67968815	MB435_Burge.30854	0	.	67967940	67968815	0	1	875	0
chr17	67968402	67968787	MeWo_Garraway.26517	0	.	67968402	67968787	0	1	385	0
chr17	67969629	67970581	MB435_Burge.30856	0	.	67969629	67970581	0	1	952	0
chr17	67970591	67974357	HIT000020183	0	+	67970591	67974357	0	1	3766	0
chr17	67970954	67972081	melanoma_Garraway_short_term_cultures.49169	0	.	67970954	67972081	0	1	1127	0
chr17	67972189	67974597	melanoma_Garraway_short_term_cultures.49171	0	.	67972189	67974597	0	1	2408	0
chr17	67975259	67976522	MB435_Burge.30858	0	.	67975259	67976522	0	1	1263	0
chr17	67975268	67978534	B_Cells_Pritchard.2313141	0	.	67975268	67978534	0	1	3266	0
chr17	67978540	67979146	MB435_Burge.30860	0	.	67978540	67979146	0	1	606	0
chr17	67978562	67979240	MIP101.49437	0	.	67978562	67979240	0	1	678	0
chr17	67981326	67992217	REMC_LuminalBreast.81544	0	.	67981326	67992217	0	1	10891	0
chr17	67981826	67984307	REMC_MyoepithelialBreast.66943	0	.	67981826	67984307	0	1	2481	0
chr17	67982534	67983088	MB435_Burge.30862	0	.	67982534	67983088	0	1	554	0
chr17	67982705	67985767	MIP101.49438	0	.	67982705	67985767	0	1	3062	0
chr17	67982780	67985756	melanoma_Garraway_short_term_cultures.49176	0	.	67982780	67985756	0	1	2976	0
chr17	67984616	67986283	REMC_MyoepithelialBreast.66944	0	.	67984616	67986283	0	1	1667	0
chr17	67985994	67988274	B_cells_Cheung.139884	0	.	67985994	67988274	0	1	2280	0
chr17	67986358	67987910	melanoma_Garraway_short_term_cultures.49177	0	.	67986358	67987910	0	1	1552	0
chr17	67986394	67987328	MIP101.49439	0	.	67986394	67987328	0	1	934	0
chr17	67986778	67992208	REMC_MyoepithelialBreast.66945	0	.	67986778	67992208	0	1	5430	0
chr17	67986919	67987233	A549_Myers.60822	0	.	67986919	67987233	0	1	314	0
chr17	67988492	67990374	melanoma_Garraway_short_term_cultures.49179	0	.	67988492	67990374	0	1	1882	0
chr17	67988941	67990407	MIP101.49440	0	.	67988941	67990407	0	1	1466	0
chr17	67990712	67991544	B_cells_Cheung.139885	0	.	67990712	67991544	0	1	832	0
chr17	67990791	67992197	melanoma_Garraway_short_term_cultures.49180	0	.	67990791	67992197	0	1	1406	0
chr17	67990800	67991221	MB435_Burge.30864	0	.	67990800	67991221	0	1	421	0
chr17	67992346	68005421	REMC_LuminalBreast.81545	0	.	67992346	68005421	0	1	13075	0
chr17	67993169	67995805	REMC_MyoepithelialBreast.66946	0	.	67993169	67995805	0	1	2636	0
chr17	67995505	67996061	B_cells_Cheung.139889	0	.	67995505	67996061	0	1	556	0
chr17	67995769	67996371	MIP101.49442	0	.	67995769	67996371	0	1	602	0
chr17	68003635	68004424	B_cells_Cheung.139893	0	.	68003635	68004424	0	1	789	0
chr17	68005507	68007763	REMC_LuminalBreast.81546	0	.	68005507	68007763	0	1	2256	0
chr17	68005661	68007097	melanoma_Garraway_short_term_cultures.49188	0	.	68005661	68007097	0	1	1436	0
chr17	68005667	68007098	MIP101.49450	0	.	68005667	68007098	0	1	1431	0
chr17	68005669	68007077	REMC_MyoepithelialBreast.66951	0	.	68005669	68007077	0	1	1408	0
chr17	68005677	68007733	B_cells_Cheung.139895	0	.	68005677	68007733	0	1	2056	0
chr17	68005976	68007065	B_Cells_Pritchard.2313269	0	.	68005976	68007065	0	1	1089	0
chr17	68007897	68016998	REMC_LuminalBreast.81547	0	.	68007897	68016998	0	1	9101	0
chr17	68008840	68011923	melanoma_Garraway_short_term_cultures.49191	0	.	68008840	68011923	0	1	3083	0
chr17	68008857	68011661	B_cells_Cheung.139897	0	.	68008857	68011661	0	1	2804	0
chr17	68008924	68012103	REMC_MyoepithelialBreast.66953	0	.	68008924	68012103	0	1	3179	0
chr17	68009430	68009758	A549_Myers.60827	0	.	68009430	68009758	0	1	328	0
chr17	68012395	68014090	REMC_MyoepithelialBreast.66954	0	.	68012395	68014090	0	1	1695	0
chr17	68014204	68016931	REMC_MyoepithelialBreast.66955	0	.	68014204	68016931	0	1	2727	0
chr17	68014223	68014962	B_cells_Cheung.139899	0	.	68014223	68014962	0	1	739	0
chr17	68014303	68016542	melanoma_Garraway_short_term_cultures.49194	0	.	68014303	68016542	0	1	2239	0
chr17	68014391	68015098	B_Cells_Pritchard.2313307	0	.	68014391	68015098	0	1	707	0
chr17	68014429	68015283	MeWo_Garraway.26526	0	.	68014429	68015283	0	1	854	0
chr17	68015120	68015768	B_cells_Cheung.139900	0	.	68015120	68015768	0	1	648	0
chr17	68017092	68021351	REMC_LuminalBreast.81548	0	.	68017092	68021351	0	1	4259	0
chr17	68017106	68021292	B_cells_Cheung.139902	0	.	68017106	68021292	0	1	4186	0
chr17	68017125	68021326	REMC_MyoepithelialBreast.66956	0	.	68017125	68021326	0	1	4201	0
chr17	68020186	68021217	B_Cells_Pritchard.2313331	0	.	68020186	68021217	0	1	1031	0
chr17	68020305	68021290	melanoma_Garraway_short_term_cultures.49196	0	.	68020305	68021290	0	1	985	0
chr17	68021484	68031930	REMC_LuminalBreast.81549	0	.	68021484	68031930	0	1	10446	0
chr17	68021511	68026284	B_cells_Cheung.139903	0	.	68021511	68026284	0	1	4773	0
chr17	68021530	68024348	REMC_MyoepithelialBreast.66957	0	.	68021530	68024348	0	1	2818	0
chr17	68021633	68025028	A549_Myers.60831	0	+	68021633	68025028	0	2	54,567	0,2828
chr17	68021735	68037177	B_Cells_Pritchard.2313335	0	-	68021735	68037177	0	2	2219,1807	0,13635
chr17	68022033	68023951	melanoma_Garraway_short_term_cultures.49198	0	.	68022033	68023951	0	1	1918	0
chr17	68022197	68024860	MIP101.49460	0	.	68022197	68024860	0	1	2663	0
chr17	68023341	68023738	MeWo_Garraway.26531	0	.	68023341	68023738	0	1	397	0
chr17	68024388	68024915	MB435_Burge.31248	0	.	68024388	68024915	0	1	527	0
chr17	68026805	68027390	MeWo_Garraway.26533	0	.	68026805	68027390	0	1	585	0
chr17	68032101	68040652	REMC_LuminalBreast.81550	0	.	68032101	68040652	0	1	8551	0
chr17	68032693	68036125	REMC_MyoepithelialBreast.66962	0	.	68032693	68036125	0	1	3432	0
chr17	68035361	68038797	B_cells_Cheung.139910	0	.	68035361	68038797	0	1	3436	0
chr17	68035389	68038785	melanoma_Garraway_short_term_cultures.49206	0	.	68035389	68038785	0	1	3396	0
chr17	68035397	68036088	MIP101.49469	0	.	68035397	68036088	0	1	691	0
chr17	68035648	68035975	A549_Myers.60836	0	.	68035648	68035975	0	1	327	0
chr17	68035736	68036468	MB435_Burge.31258	0	.	68035736	68036468	0	1	732	0
chr17	68036077	68036763	prostate_carcinoma.71234	0	.	68036077	68036763	0	1	686	0
chr17	68036088	68036623	MIP101.49461	0	.	68036088	68036623	0	1	535	0
chr17	68036210	68040585	REMC_MyoepithelialBreast.66963	0	.	68036210	68040585	0	1	4375	0
chr17	68040709	68048175	REMC_LuminalBreast.81551	0	.	68040709	68048175	0	1	7466	0
chr17	68041633	68049214	B_cells_Cheung.139913	0	.	68041633	68049214	0	1	7581	0
chr17	68042005	68048167	REMC_MyoepithelialBreast.66965	0	.	68042005	68048167	0	1	6162	0
chr17	68042039	68045403	melanoma_Garraway_short_term_cultures.49210	0	.	68042039	68045403	0	1	3364	0
chr17	68042792	68048718	B_Cells_Pritchard.2313417	0	.	68042792	68048718	0	1	5926	0
chr17	68043057	68043795	MIP101.49472	0	.	68043057	68043795	0	1	738	0
chr17	68043544	68045342	MB435_Burge.31267	0	.	68043544	68045342	0	1	1798	0
chr17	68043651	68045392	prostate_carcinoma.71236	0	.	68043651	68045392	0	1	1741	0
chr17	68044747	68045262	MCF7_Burge_Thompson.22929	0	.	68044747	68045262	0	1	515	0
chr17	68044961	68045395	MIP101.49473	0	.	68044961	68045395	0	1	434	0
chr17	68045488	68051665	melanoma_Garraway_short_term_cultures.49211	0	.	68045488	68051665	0	1	6177	0
chr17	68045604	68046067	MeWo_Garraway.26544	0	.	68045604	68046067	0	1	463	0
chr17	68046914	68062086	prostate_carcinoma.71243	0	-	68046914	68062086	0	2	11,891	0,14281
chr17	68046986	68062101	HME_Burge.29450	0	-	68046986	68062101	0	2	298,371	0,14744
chr17	68047443	68048200	MIP101.49475	0	.	68047443	68048200	0	1	757	0
chr17	68047961	68048793	A549_Myers.60839	0	.	68047961	68048793	0	1	832	0
chr17	68048171	68048485	MB435_Burge.31269	0	.	68048171	68048485	0	1	314	0
chr17	68048230	68051700	REMC_LuminalBreast.81552	0	.	68048230	68051700	0	1	3470	0
chr17	68048255	68049044	MIP101.49476	0	.	68048255	68049044	0	1	789	0
chr17	68048306	68051698	REMC_MyoepithelialBreast.66966	0	.	68048306	68051698	0	1	3392	0
chr17	68049322	68051675	B_cells_Cheung.139914	0	.	68049322	68051675	0	1	2353	0
chr17	68049794	68051643	B_Cells_Pritchard.2313425	0	.	68049794	68051643	0	1	1849	0
chr17	68050028	68050535	A549_Myers.60840	0	.	68050028	68050535	0	1	507	0
chr17	68050037	68051081	MB435_Burge.31272	0	.	68050037	68051081	0	2	260,276	0,768
chr17	68050082	68050386	colon_Raymond.90923	0	.	68050082	68050386	0	1	304	0
chr17	68050548	68051069	prostate_carcinoma.71246	0	.	68050548	68051069	0	1	521	0
chr17	68050669	68051084	MCF7_Burge_Thompson.22930	0	.	68050669	68051084	0	1	415	0
chr17	68051184	68051642	MIP101.49478	0	.	68051184	68051642	0	1	458	0
chr17	68053475	68059958	REMC_LuminalBreast.81556	0	.	68053475	68059958	0	1	6483	0
chr17	68053580	68059675	REMC_MyoepithelialBreast.66967	0	.	68053580	68059675	0	1	6095	0
chr17	68054732	68055571	melanoma_Garraway_short_term_cultures.49214	0	.	68054732	68055571	0	1	839	0
chr17	68054750	68055694	MIP101.49480	0	.	68054750	68055694	0	1	944	0
chr17	68055173	68055675	B_Cells_Pritchard.2313435	0	.	68055173	68055675	0	1	502	0
chr17	68055181	68055557	A549_Myers.60841	0	.	68055181	68055557	0	1	376	0
chr17	68055246	68055551	MB435_Burge.31276	0	.	68055246	68055551	0	1	305	0
chr17	68055261	68055565	MeWo_Garraway.26549	0	.	68055261	68055565	0	1	304	0
chr17	68056497	68077795	MIP101.49484	0	-	68056497	68077795	0	2	541,959	0,20339
chr17	68058694	68059504	melanoma_Garraway_short_term_cultures.49216	0	.	68058694	68059504	0	1	810	0
chr17	68060293	68072502	REMC_LuminalBreast.81513	0	.	68060293	68072502	0	1	12209	0
chr17	68060323	68072499	REMC_MyoepithelialBreast.66968	0	.	68060323	68072499	0	1	12176	0
chr17	68060337	68063985	melanoma_Garraway_short_term_cultures.49217	0	.	68060337	68063985	0	1	3648	0
chr17	68060338	68063277	B_cells_Cheung.139917	0	.	68060338	68063277	0	1	2939	0
chr17	68060360	68064032	prostate_carcinoma.71244	0	.	68060360	68064032	0	1	3672	0
chr17	68060379	68062065	MIP101.49485	0	.	68060379	68062065	0	1	1686	0
chr17	68060488	68062081	HepG2_Caltech_ENCODE.26688	0	.	68060488	68062081	0	1	1593	0
chr17	68060601	68062729	B_Cells_Pritchard.2313453	0	.	68060601	68062729	0	1	2128	0
chr17	68060765	68061985	H1_polyA+.83829	0	.	68060765	68061985	0	1	1220	0
chr17	68060899	68062053	prostate_normal.41877	0	.	68060899	68062053	0	1	1154	0
chr17	68060918	68063239	MB435_Burge.31253	0	.	68060918	68063239	0	1	2321	0
chr17	68060943	68062244	brain_AmbionMAQC.31810	0	.	68060943	68062244	0	1	1301	0
chr17	68061006	68061737	HME_Burge.29452	0	.	68061006	68061737	0	1	731	0
chr17	68061011	68061605	A549_Myers.60842	0	.	68061011	68061605	0	1	594	0
chr17	68061012	68061866	MCF7_Burge_Thompson.22927	0	.	68061012	68061866	0	1	854	0
chr17	68061882	68062195	A549_Myers.60844	0	.	68061882	68062195	0	1	313	0
chr17	68062358	68064009	MIP101.49486	0	.	68062358	68064009	0	1	1651	0
chr17	68063414	68063962	B_cells_Cheung.139918	0	.	68063414	68063962	0	1	548	0
chr17	68064292	68065983	prostate_carcinoma.71245	0	.	68064292	68065983	0	1	1691	0
chr17	68064292	68067054	MIP101.49487	0	.	68064292	68067054	0	1	2762	0
chr17	68064296	68065662	MB435_Burge.31254	0	.	68064296	68065662	0	1	1366	0
chr17	68064310	68066374	B_cells_Cheung.139919	0	.	68064310	68066374	0	1	2064	0
chr17	68064338	68065968	B_Cells_Pritchard.2313461	0	.	68064338	68065968	0	1	1630	0
chr17	68064781	68065963	prostate_normal.41879	0	.	68064781	68065963	0	1	1182	0
chr17	68064793	68065445	brain_AmbionMAQC.31811	0	.	68064793	68065445	0	1	652	0
chr17	68064927	68065635	colon_Raymond.90926	0	.	68064927	68065635	0	1	708	0
chr17	68065026	68065518	MCF7_Burge_Thompson.22928	0	.	68065026	68065518	0	1	492	0
chr17	68065094	68065868	H1_polyA+.83830	0	.	68065094	68065868	0	1	774	0
chr17	68065225	68067073	melanoma_Garraway_short_term_cultures.49219	0	.	68065225	68067073	0	1	1848	0
chr17	68066487	68069903	B_cells_Cheung.139920	0	.	68066487	68069903	0	1	3416	0
chr17	68067307	68071135	melanoma_Garraway_short_term_cultures.49220	0	.	68067307	68071135	0	1	3828	0
chr17	68067908	68071069	MIP101.49488	0	.	68067908	68071069	0	1	3161	0
chr17	68068038	68068932	A549_Myers.60847	0	.	68068038	68068932	0	1	894	0
chr17	68068095	68069472	B_Cells_Pritchard.2313469	0	.	68068095	68069472	0	1	1377	0
chr17	68069927	68070448	MeWo_Garraway.26556	0	.	68069927	68070448	0	1	521	0
chr17	68070110	68070961	B_Cells_Pritchard.2313473	0	.	68070110	68070961	0	1	851	0
chr17	68070110	68070984	prostate_carcinoma.71237	0	.	68070110	68070984	0	1	874	0
chr17	68070115	68072621	B_cells_Cheung.139921	0	.	68070115	68072621	0	1	2506	0
chr17	68071355	68072479	melanoma_Garraway_short_term_cultures.49221	0	.	68071355	68072479	0	1	1124	0
chr17	68071483	68072491	MIP101.49489	0	.	68071483	68072491	0	1	1008	0
chr17	68071512	68071963	B_Cells_Pritchard.2313477	0	.	68071512	68071963	0	1	451	0
chr17	68071856	68072387	MeWo_Garraway.26558	0	.	68071856	68072387	0	1	531	0
chr17	68072782	68078692	REMC_LuminalBreast.81557	0	.	68072782	68078692	0	1	5910	0
chr17	68073532	68074187	HepG2_Caltech_ENCODE.26690	0	.	68073532	68074187	0	1	655	0
chr17	68073539	68076102	B_cells_Cheung.139923	0	.	68073539	68076102	0	1	2563	0
chr17	68073546	68076480	melanoma_Garraway_short_term_cultures.49223	0	.	68073546	68076480	0	1	2934	0
chr17	68073546	68076453	MIP101.49491	0	.	68073546	68076453	0	1	2907	0
chr17	68073560	68074284	MB435_Burge.31290	0	.	68073560	68074284	0	1	724	0
chr17	68073566	68074565	H1_polyA+.83831	0	.	68073566	68074565	0	1	999	0
chr17	68073569	68074308	B_Cells_Pritchard.2313483	0	.	68073569	68074308	0	1	739	0
chr17	68073590	68074338	prostate_carcinoma.71240	0	.	68073590	68074338	0	1	748	0
chr17	68076237	68078655	B_cells_Cheung.139924	0	.	68076237	68078655	0	1	2418	0
chr17	68076607	68091605	REMC_MyoepithelialBreast.66917	0	.	68076607	68091605	0	1	14998	0
chr17	68076744	68077800	melanoma_Garraway_short_term_cultures.49224	0	.	68076744	68077800	0	1	1056	0
chr17	68076751	68077702	B_Cells_Pritchard.2313495	0	.	68076751	68077702	0	1	951	0
chr17	68076768	68077795	MIP101.49483	0	.	68076768	68077795	0	1	1027	0
chr17	68076779	68077525	MeWo_Garraway.26562	0	.	68076779	68077525	0	1	746	0
chr17	68076783	68077774	H1_polyA+.83832	0	.	68076783	68077774	0	1	991	0
chr17	68077022	68077374	MB435_Burge.31293	0	.	68077022	68077374	0	1	352	0
chr17	68078265	68078646	A549_Myers.60852	0	.	68078265	68078646	0	1	381	0
chr17	68078779	68092876	REMC_LuminalBreast.81514	0	.	68078779	68092876	0	1	14097	0
chr17	68078805	68097615	REMC_LuminalBreast.81516	0	-	68078805	68097615	0	2	12067,3228	0,15582
chr17	68078818	68081426	B_cells_Cheung.139925	0	.	68078818	68081426	0	1	2608	0
chr17	68078836	68081260	melanoma_Garraway_short_term_cultures.49226	0	.	68078836	68081260	0	1	2424	0
chr17	68078906	68081195	MIP101.49493	0	.	68078906	68081195	0	1	2289	0
chr17	68078926	68079784	A549_Myers.60853	0	.	68078926	68079784	0	1	858	0
chr17	68078950	68080292	MB435_Burge.31295	0	.	68078950	68080292	0	1	1342	0
chr17	68079015	68079929	B_Cells_Pritchard.2313501	0	.	68079015	68079929	0	1	914	0
chr17	68081442	68082865	melanoma_Garraway_short_term_cultures.49227	0	.	68081442	68082865	0	1	1423	0
chr17	68081457	68082513	HepG2_Caltech_ENCODE.26691	0	.	68081457	68082513	0	1	1056	0
chr17	68081472	68083024	MIP101.49494	0	.	68081472	68083024	0	1	1552	0
chr17	68081501	68082824	MB435_Burge.31297	0	.	68081501	68082824	0	1	1323	0
chr17	68081548	68084162	B_cells_Cheung.139926	0	.	68081548	68084162	0	1	2614	0
chr17	68081639	68082562	B_Cells_Pritchard.2313509	0	.	68081639	68082562	0	1	923	0
chr17	68081800	68082557	prostate_carcinoma.71242	0	.	68081800	68082557	0	1	757	0
chr17	68081913	68082398	HME_Burge.29456	0	.	68081913	68082398	0	1	485	0
chr17	68081971	68082458	MCF7_Burge_Thompson.22932	0	.	68081971	68082458	0	1	487	0
chr17	68081982	68082464	colon_Raymond.90848	0	.	68081982	68082464	0	1	482	0
chr17	68082735	68083953	B_Cells_Pritchard.2313511	0	.	68082735	68083953	0	1	1218	0
chr17	68082961	68083622	A549_Myers.60855	0	.	68082961	68083622	0	1	661	0
chr17	68083070	68083499	ZR751_Thompson.17482	0	.	68083070	68083499	0	1	429	0
chr17	68087698	68088230	B_cells_Cheung.139930	0	.	68087698	68088230	0	1	532	0
chr17	68088357	68091806	B_cells_Cheung.139931	0	.	68088357	68091806	0	1	3449	0
chr17	68090337	68091706	B_Cells_Pritchard.2313535	0	.	68090337	68091706	0	1	1369	0
chr17	68091931	68092827	REMC_MyoepithelialBreast.66969	0	.	68091931	68092827	0	1	896	0
chr17	68093192	68103085	REMC_LuminalBreast.81515	0	.	68093192	68103085	0	1	9893	0
chr17	68093433	68093872	prostate_carcinoma.71251	0	.	68093433	68093872	0	1	439	0
chr17	68094382	68094913	MIP101.49501	0	.	68094382	68094913	0	1	531	0
chr17	68097886	68100526	B_Cells_Pritchard.2313559	0	.	68097886	68100526	0	1	2640	0
chr17	68098390	68100526	prostate_carcinoma.71255	0	.	68098390	68100526	0	1	2136	0
chr17	68098424	68099814	B_cells_Cheung.139937	0	.	68098424	68099814	0	1	1390	0
chr17	68098425	68098735	A549_Myers.60861	0	.	68098425	68098735	0	1	310	0
chr17	68098465	68098798	MB435_Burge.30829	0	.	68098465	68098798	0	1	333	0
chr17	68099125	68101810	HIT000020258	0	+	68099125	68101810	0	1	2685	0
chr17	68099171	68099762	A549_Myers.60862	0	.	68099171	68099762	0	1	591	0
chr17	68099518	68100543	MB435_Burge.30833	0	.	68099518	68100543	0	1	1025	0
chr17	68099696	68100536	MIP101.49503	0	.	68099696	68100536	0	1	840	0
chr17	68099825	68100994	A549_Myers.60863	0	.	68099825	68100994	0	1	1169	0
chr17	68099922	68100523	CD4_Plagnol_resting.45496	0	.	68099922	68100523	0	1	601	0
chr17	68099925	68100526	brain_AmbionMAQC.31808	0	.	68099925	68100526	0	1	601	0
chr17	68099925	68100523	BT20_Thompson.15630	0	.	68099925	68100523	0	1	598	0
chr17	68099925	68100526	prostate_normal.41882	0	.	68099925	68100526	0	1	601	0
chr17	68099925	68100530	HME_Burge.29458	0	.	68099925	68100530	0	1	605	0
chr17	68099926	68100523	MCF7_Burge_Thompson.22933	0	.	68099926	68100523	0	1	597	0
chr17	68099926	68100530	MDAMB231_Thompson.16077	0	.	68099926	68100530	0	1	604	0
chr17	68099929	68100539	CD4_Plagnol_activated.46660	0	.	68099929	68100539	0	1	610	0
chr17	68099936	68100528	MeI_Garraway.12859	0	.	68099936	68100528	0	1	592	0
chr17	68099962	68100540	H1_polyA+.83834	0	.	68099962	68100540	0	1	578	0
chr17	68100014	68100372	T47D_Burge_Thompson.21178	0	.	68100014	68100372	0	1	358	0
chr17	68105584	68107357	B_cells_Cheung.139790	0	.	68105584	68107357	0	1	1773	0
chr17	68105584	68111552	B_cells_Cheung.139792	0	-	68105584	68111552	0	2	1294,716	0,5252
chr17	68105690	68107158	HepG2_Caltech_ENCODE.26694	0	.	68105690	68107158	0	1	1468	0
chr17	68105761	68107227	B_Cells_Pritchard.2313591	0	.	68105761	68107227	0	1	1466	0
chr17	68105770	68126333	melanoma_Garraway_short_term_cultures.49235	0	-	68105770	68126333	0	3	1108,566,284	0,5066,20279
chr17	68105790	68106866	MeI_Garraway.12860	0	.	68105790	68106866	0	1	1076	0
chr17	68105791	68106866	MCF10A_Thompson.15516	0	.	68105791	68106866	0	1	1075	0
chr17	68105798	68106931	MIP101.49500	0	.	68105798	68106931	0	1	1133	0
chr17	68105974	68111445	REMC_LuminalBreast.72256	0	-	68105974	68111445	0	2	904,609	0,4862
chr17	68107431	68110108	B_cells_Cheung.139793	0	.	68107431	68110108	0	1	2677	0
chr17	68107435	68110102	B_Cells_Pritchard.2313593	0	.	68107435	68110102	0	1	2667	0
chr17	68107527	68111426	melanoma_Garraway_short_term_cultures.49233	0	.	68107527	68111426	0	1	3899	0
chr17	68110816	68111523	MIP101.49504	0	.	68110816	68111523	0	1	707	0
chr17	68118909	68119543	B_cells_Cheung.139795	0	.	68118909	68119543	0	1	634	0
chr17	68123248	68123821	melanoma_Garraway_short_term_cultures.49237	0	.	68123248	68123821	0	1	573	0
chr17	68124272	68124900	B_Cells_Pritchard.2313623	0	.	68124272	68124900	0	1	628	0
chr17	68130565	68131656	HepG2_Caltech_ENCODE.26697	0	.	68130565	68131656	0	1	1091	0
chr17	68134210	68134877	B_cells_Cheung.139799	0	.	68134210	68134877	0	1	667	0
chr17	68139781	68140407	A549_Myers.60873	0	.	68139781	68140407	0	1	626	0
chr17	68143692	68144391	melanoma_Garraway_short_term_cultures.49241	0	.	68143692	68144391	0	1	699	0
chr17	68143722	68144301	B_cells_Cheung.139801	0	.	68143722	68144301	0	1	579	0
chr17	68663158	68663620	A549_Myers.60922	0	.	68663158	68663620	0	1	462	0
chr17	68664143	68665058	H1_polyA+.83919	0	.	68664143	68665058	0	1	915	0
chr17	68664194	68665271	B_Cells_Pritchard.2315451	0	.	68664194	68665271	0	1	1077	0
chr17	68664242	68665371	B_cells_Cheung.139852	0	.	68664242	68665371	0	1	1129	0
chr17	68681781	68683037	REMC_MyoepithelialBreast.66853	0	.	68681781	68683037	0	1	1256	0
chr17	68681856	68682548	T47D_Burge_Thompson.21183	0	.	68681856	68682548	0	1	692	0
chr17	68681860	68682548	ZR751_Thompson.17484	0	.	68681860	68682548	0	1	688	0
chr17	68681867	68682403	brain_AmbionMAQC.31856	0	.	68681867	68682403	0	1	536	0
chr17	68681871	68682484	H9_polyA+.32192	0	.	68681871	68682484	0	1	613	0
chr17	68681873	68682210	NEC_from_H9.53756	0	.	68681873	68682210	0	1	337	0
chr17	68681888	68682198	prostate_normal.41913	0	.	68681888	68682198	0	1	310	0
chr17	68687532	68687935	brain_AmbionMAQC.31860	0	.	68687532	68687935	0	1	403	0
chr17	68690085	68693613	H1_polyA+.83928	0	.	68690085	68693613	0	1	3528	0
chr17	68690091	68693614	B_cells_Cheung.140004	0	.	68690091	68693614	0	1	3523	0
chr17	68693780	68694750	H1_polyA+.83929	0	.	68693780	68694750	0	1	970	0
chr17	68694990	68695436	H9_polyA+.32198	0	.	68694990	68695436	0	1	446	0
chr17	68697800	68698676	HeLa_polyA+_Chen.26140	0	.	68697800	68698676	0	1	876	0
chr17	68698092	68698749	REMC_MyoepithelialBreast.66856	0	.	68698092	68698749	0	1	657	0
chr17	68776098	68776688	A549_Myers.60951	0	.	68776098	68776688	0	1	590	0
chr17	68778313	68781059	REMC_MyoepithelialBreast.66883	0	.	68778313	68781059	0	1	2746	0
chr17	68778846	68779420	REMC_BreastStem.36737	0	.	68778846	68779420	0	1	574	0
chr17	68784213	68786307	HIT000088638	0	-	68784213	68786307	0	2	428,755	0,1339
chr17	68786640	68787081	HeLa_polyA+_Chen.26104	0	.	68786640	68787081	0	1	441	0
chr17	68786645	68787038	A549_Myers.60953	0	.	68786645	68787038	0	1	393	0
chr17	68786661	68787020	T47D_Burge_Thompson.21232	0	.	68786661	68787020	0	1	359	0
chr17	68786710	68787023	adipose_Burge.28265	0	.	68786710	68787023	0	1	313	0
chr17	68787228	68788633	prostate_carcinoma.71300	0	.	68787228	68788633	0	1	1405	0
chr17	68787299	68788600	ZR751_Thompson.17489	0	.	68787299	68788600	0	1	1301	0
chr17	68787331	68788469	prostate_normal.41931	0	.	68787331	68788469	0	1	1138	0
chr17	68787400	68787915	B_cells_Cheung.139955	0	.	68787400	68787915	0	1	515	0
chr17	68787454	68788054	MDAMB468_Thompson.17324	0	.	68787454	68788054	0	1	600	0
chr17	68787456	68788241	A549_Myers.60954	0	.	68787456	68788241	0	1	785	0
chr17	68787677	68788610	MIP101.49618	0	.	68787677	68788610	0	1	933	0
chr17	68787969	68788793	B_cells_Cheung.139956	0	.	68787969	68788793	0	1	824	0
chr17	69153127	69153827	prostate_carcinoma.71337	0	.	69153127	69153827	0	1	700	0
chr17	69219636	69220068	A549_Myers.61034	0	.	69219636	69220068	0	1	432	0
chr17	69347273	69391831	pHIT000117636	0	+	69347273	69391831	0	3	41,124,144	0,789,44414
chr17	69460056	69461275	A549_Myers.61054	0	-	69460056	69461275	0	2	457,477	0,742
chr17	69460493	69461275	A549_Myers.61055	0	.	69460493	69461275	0	1	782	0
chr17	69460683	69461201	B_Cells_Pritchard.2317519	0	.	69460683	69461201	0	1	518	0
chr17	69461305	69462600	B_Cells_Pritchard.2317521	0	.	69461305	69462600	0	1	1295	0
chr17	69461805	69462288	BT474_Burge_Thompson.24727	0	.	69461805	69462288	0	1	483	0
chr17	69513835	69514211	A549_Myers.61059	0	.	69513835	69514211	0	1	376	0
chr17	69519643	69520023	A549_Myers.61062	0	.	69519643	69520023	0	1	380	0
chr17	69606018	69606638	A549_Myers.61067	0	.	69606018	69606638	0	1	620	0
chr17	69614867	69615352	A549_Myers.61069	0	.	69614867	69615352	0	1	485	0
chr17	69657800	69658173	B_Cells_Pritchard.2318087	0	.	69657800	69658173	0	1	373	0
chr17	69668121	69668704	B_Cells_Pritchard.2318135	0	.	69668121	69668704	0	1	583	0
chr17	69668498	69669212	BT474_Burge_Thompson.24728	0	.	69668498	69669212	0	1	714	0
chr17	69676439	69684799	A549_Myers.61072	0	-	69676439	69684799	0	2	61,819	0,7541
chr17	69684065	69684581	B_Cells_Pritchard.2318189	0	.	69684065	69684581	0	1	516	0
chr17	69684066	69684777	ZR751_Thompson.17506	0	.	69684066	69684777	0	1	711	0
chr17	69694110	69694479	A549_Myers.61073	0	.	69694110	69694479	0	1	369	0
chr17	69695936	69696296	B_Cells_Pritchard.2318239	0	.	69695936	69696296	0	1	360	0
chr17	69695982	69696303	brain_AmbionMAQC.31827	0	.	69695982	69696303	0	1	321	0
chr17	69701115	69701536	A549_Myers.61075	0	.	69701115	69701536	0	1	421	0
chr17	69704205	69704746	B_Cells_Pritchard.2318281	0	.	69704205	69704746	0	1	541	0
chr17	69718667	69719428	H9_polyA-_Chen.10307	0	.	69718667	69719428	0	1	761	0
chr17	69718892	69719687	K562.32188	0	.	69718892	69719687	0	1	795	0
chr17	69719032	69720043	BT20_Thompson.15638	0	.	69719032	69720043	0	1	1011	0
chr17	69719068	69719959	MeWo_Garraway.26170	0	.	69719068	69719959	0	1	891	0
chr17	69719169	69719785	H1_rRNA-depleted_UCSD_REMC.62565	0	.	69719169	69719785	0	1	616	0
chr17	69887209	69887867	A549_Myers.61125	0	.	69887209	69887867	0	1	658	0
chr17	69887927	69888440	A549_Myers.61126	0	.	69887927	69888440	0	1	513	0
chr17	69920929	69921731	H1_polyA+.84059	0	.	69920929	69921731	0	1	802	0
chr17	69927584	69928213	H1_polyA+.84061	0	.	69927584	69928213	0	1	629	0
chr17	69931833	69933938	H1_polyA+.84064	0	.	69931833	69933938	0	1	2105	0
chr17	69932251	69932666	pHIT000117643	0	+	69932251	69932666	0	1	415	0
chr17	69932567	69936386	HIT000046542	0	-	69932567	69936386	0	1	3819	0
chr17	69959605	69960065	prostate_carcinoma.71401	0	.	69959605	69960065	0	1	460	0
chr17	69960694	69961187	B_Cells_Pritchard.2321603	0	-	69960694	69961187	0	1	493	0
chr17	69961778	69962214	A549_Myers.61139	0	.	69961778	69962214	0	1	436	0
chr17	69962305	69962623	A549_Myers.61140	0	.	69962305	69962623	0	1	318	0
chr17	69998435	69999193	B_cells_Cheung.140015	0	.	69998435	69999193	0	1	758	0
chr17	70002411	70002845	B_cells_Cheung.140017	0	.	70002411	70002845	0	1	434	0
chr17	70023640	70025274	B_Cells_Pritchard.2319169	0	.	70023640	70025274	0	1	1634	0
chr17	70023899	70025113	B_cells_Cheung.140023	0	.	70023899	70025113	0	1	1214	0
chr17	70044342	70045215	B_Cells_Pritchard.2319189	0	.	70044342	70045215	0	1	873	0
chr17	70044687	70045145	B_cells_Cheung.140039	0	.	70044687	70045145	0	1	458	0
chr17	70589404	70590715	B_Cells_Pritchard.2320605	0	+	70589404	70590715	0	1	1311	0
chr17	70591930	70592252	A549_Myers.61297	0	.	70591930	70592252	0	1	322	0
chr17	70664594	70665677	B_cells_Cheung.140149	0	.	70664594	70665677	0	1	1083	0
chr17	70664638	70665657	H1_polyA+.84175	0	.	70664638	70665657	0	1	1019	0
chr17	70664670	70669962	REMC_LuminalBreast.72509	0	.	70664670	70669962	0	1	5292	0
chr17	70665776	70666531	B_cells_Cheung.140150	0	.	70665776	70666531	0	1	755	0
chr17	70798980	70799946	B_cells_Cheung.140751	0	.	70798980	70799946	0	1	966	0
chr17	70799002	70799959	REMC_LuminalBreast.72560	0	.	70799002	70799959	0	1	957	0
chr17	70799390	70800063	REMC_MyoepithelialBreast.67083	0	.	70799390	70800063	0	1	673	0
chr17	70800146	70802335	REMC_LuminalBreast.72561	0	.	70800146	70802335	0	1	2189	0
chr17	70804140	70804600	B_cells_Cheung.140754	0	.	70804140	70804600	0	1	460	0
chr17	70804196	70807196	REMC_LuminalBreast.72563	0	.	70804196	70807196	0	1	3000	0
chr17	70804806	70806508	REMC_MyoepithelialBreast.67088	0	.	70804806	70806508	0	1	1702	0
chr17	70806155	70806595	HepG2_Caltech_ENCODE.26804	0	.	70806155	70806595	0	1	440	0
chr17	70807453	70811021	REMC_LuminalBreast.72564	0	.	70807453	70811021	0	1	3568	0
chr17	70808287	70809995	B_cells_Cheung.140225	0	.	70808287	70809995	0	1	1708	0
chr17	70808585	70810412	REMC_MyoepithelialBreast.67090	0	.	70808585	70810412	0	1	1827	0
chr17	70810484	70811443	REMC_MyoepithelialBreast.67091	0	.	70810484	70811443	0	1	959	0
chr17	71219151	71220560	REMC_BreastStem.36833	0	.	71219151	71220560	0	1	1409	0
chr17	71274340	71277755	REMC_MyoepithelialBreast.67171	0	.	71274340	71277755	0	1	3415	0
chr17	71274371	71277739	REMC_LuminalBreast.72757	0	.	71274371	71277739	0	1	3368	0
chr17	71274639	71275994	REMC_BreastStem.36846	0	.	71274639	71275994	0	1	1355	0
chr17	71275283	71276784	B_cells_Cheung.140354	0	.	71275283	71276784	0	1	1501	0
chr17	71276079	71278073	REMC_BreastStem.36847	0	.	71276079	71278073	0	1	1994	0
chr17	71369364	71369985	B_cells_Cheung.140363	0	.	71369364	71369985	0	1	621	0
chr17	71377266	71378979	REMC_LuminalBreast.72629	0	.	71377266	71378979	0	1	1713	0
chr17	71377521	71377840	A549_Myers.61435	0	.	71377521	71377840	0	1	319	0
chr17	71377552	71378880	HepG2_Caltech_ENCODE.26836	0	.	71377552	71378880	0	1	1328	0
chr17	71388209	71389895	brain_AmbionMAQC.31985	0	.	71388209	71389895	0	1	1686	0
chr17	71388758	71389892	CD4_Plagnol_resting.45742	0	.	71388758	71389892	0	1	1134	0
chr17	71388781	71389179	B_cells_Cheung.140434	0	.	71388781	71389179	0	1	398	0
chr17	71389002	71389858	prostate_normal.42400	0	.	71389002	71389858	0	1	856	0
chr17	71389031	71389922	MIP101.50350	0	.	71389031	71389922	0	1	891	0
chr17	71389270	71389867	CD4_Plagnol_activated.46879	0	.	71389270	71389867	0	1	597	0
chr17	71389494	71389908	B_cells_Cheung.140435	0	.	71389494	71389908	0	1	414	0
chr17	71391803	71395223	REMC_LuminalBreast.72634	0	.	71391803	71395223	0	1	3420	0
chr17	71394197	71394969	CD4_Plagnol_activated.46908	0	.	71394197	71394969	0	1	772	0
chr17	71394237	71394960	CD4_Plagnol_resting.45746	0	.	71394237	71394960	0	1	723	0
chr17	71394239	71394816	H1_polyA+.84301	0	.	71394239	71394816	0	1	577	0
chr17	71394245	71394824	B_cells_Cheung.140438	0	.	71394245	71394824	0	1	579	0
chr17	71415805	71416411	B_cells_Cheung.140444	0	.	71415805	71416411	0	2	237,369	0,237
chr17	71415913	71416391	prostate_normal.42403	0	.	71415913	71416391	0	1	478	0
chr17	71415916	71416430	CD4_Plagnol_resting.45748	0	.	71415916	71416430	0	1	514	0
chr17	71415957	71416392	CD4_Plagnol_activated.46916	0	.	71415957	71416392	0	1	435	0
chr17	71416004	71416393	A549_Myers.61445	0	.	71416004	71416393	0	1	389	0
chr17	71537407	71537768	A549_Myers.61461	0	.	71537407	71537768	0	1	361	0
chr17	71581666	71582311	B_Cells_Pritchard.2321841	0	-	71581666	71582311	0	1	645	0
chr17	71629262	71633229	prostate_carcinoma.72361	0	-	71629262	71633229	0	2	1660,780	0,3187
chr17	71629387	71631823	H1_polyA+.84362	0	-	71629387	71631823	0	2	1298,158	0,2278
chr17	71629985	71630655	MIP101.49754	0	.	71629985	71630655	0	1	670	0
chr17	71631288	71631843	prostate_normal.42423	0	.	71631288	71631843	0	1	555	0
chr17	71631332	71633229	prostate_carcinoma.72362	0	.	71631332	71633229	0	1	1897	0
chr17	71631406	71631769	A549_Myers.61469	0	.	71631406	71631769	0	1	363	0
chr17	71631905	71633419	H1_polyA+.84364	0	.	71631905	71633419	0	1	1514	0
chr17	71637698	71639681	H1_polyA+.84369	0	.	71637698	71639681	0	1	1983	0
chr17	71637767	71640259	prostate_carcinoma.72364	0	.	71637767	71640259	0	1	2492	0
chr17	71639393	71640339	A549_Myers.61472	0	.	71639393	71640339	0	1	946	0
chr17	71748288	71749046	B_Cells_Pritchard.2328065	0	+	71748288	71749046	0	1	758	0
chr17	71780011	71780723	REMC_BreastStem.37196	0	.	71780011	71780723	0	1	712	0
chr17	71780071	71780389	A549_Myers.61511	0	.	71780071	71780389	0	1	318	0
chr17	72013977	72014305	A549_Myers.61565	0	.	72013977	72014305	0	1	328	0
chr17	72032219	72032554	brain_AmbionMAQC.32026	0	.	72032219	72032554	0	1	335	0
chr17	72061757	72062683	melanoma_Garraway_short_term_cultures.49566	0	.	72061757	72062683	0	1	926	0
chr17	72062216	72062726	MeWo_Garraway.26633	0	.	72062216	72062726	0	1	510	0
chr17	72064143	72065121	melanoma_Garraway_short_term_cultures.49568	0	.	72064143	72065121	0	1	978	0
chr17	72064771	72065151	BT474_Burge_Thompson.24894	0	.	72064771	72065151	0	1	380	0
chr17	72064846	72065223	CD4_Plagnol_resting.45854	0	.	72064846	72065223	0	1	377	0
chr17	72064906	72065251	brain_AmbionMAQC.32028	0	.	72064906	72065251	0	1	345	0
chr17	72064954	72065327	HeLa_polyA+_Chen.26268	0	.	72064954	72065327	0	1	373	0
chr17	72095613	72096713	REMC_BreastStem.36930	0	.	72095613	72096713	0	1	1100	0
chr17	72099570	72102880	REMC_MyoepithelialBreast.67225	0	.	72099570	72102880	0	1	3310	0
chr17	72100180	72102155	REMC_LuminalBreast.72722	0	.	72100180	72102155	0	1	1975	0
chr17	72104821	72106316	REMC_MyoepithelialBreast.67227	0	.	72104821	72106316	0	1	1495	0
chr17	72105187	72106323	REMC_LuminalBreast.72723	0	.	72105187	72106323	0	1	1136	0
chr17	72122267	72123509	K562.32450	0	-	72122267	72123509	0	2	298,707	0,535
chr17	72122469	72122952	CD4_Plagnol_resting.45879	0	.	72122469	72122952	0	1	483	0
chr17	72156432	72156926	prostate_carcinoma.71877	0	.	72156432	72156926	0	1	494	0
chr17	72158052	72160854	REMC_MyoepithelialBreast.67243	0	.	72158052	72160854	0	1	2802	0
chr17	72159278	72159814	H1_polyA+.84398	0	.	72159278	72159814	0	1	536	0
chr17	72159285	72159964	prostate_carcinoma.71878	0	.	72159285	72159964	0	1	679	0
chr17	72174696	72175473	REMC_MyoepithelialBreast.67247	0	.	72174696	72175473	0	1	777	0
chr17	72175024	72176024	REMC_BreastStem.36932	0	.	72175024	72176024	0	1	1000	0
chr17	72179362	72180827	REMC_BreastStem.36933	0	.	72179362	72180827	0	1	1465	0
chr17	72179519	72180851	REMC_LuminalBreast.72732	0	.	72179519	72180851	0	1	1332	0
chr17	72179618	72181350	HIT000095342	0	+	72179618	72181350	0	1	1732	0
chr17	72179656	72181332	B_cells_Cheung.140574	0	.	72179656	72181332	0	1	1676	0
chr17	72179670	72181290	K562.32418	0	.	72179670	72181290	0	1	1620	0
chr17	72180297	72180826	NEC_from_H9.54202	0	.	72180297	72180826	0	1	529	0
chr17	72180873	72181965	MCF7_Burge_Thompson.23129	0	.	72180873	72181965	0	1	1092	0
chr17	72181336	72182320	colon_Burge.27913	0	.	72181336	72182320	0	1	984	0
chr17	72181340	72182382	CD4_Plagnol_activated.47010	0	.	72181340	72182382	0	1	1042	0
chr17	72181415	72181902	H9_polyA+.32429	0	.	72181415	72181902	0	1	487	0
chr17	72181429	72182341	liver_polyA+.97571	0	.	72181429	72182341	0	1	912	0
chr17	72181443	72182335	CD4_Plagnol_resting.45893	0	.	72181443	72182335	0	1	892	0
chr17	72181512	72182328	breast_Burge.29677	0	.	72181512	72182328	0	1	816	0
chr17	72181517	72182303	adipose_Burge.28594	0	.	72181517	72182303	0	1	786	0
chr17	72181627	72181942	skeletal_muscle_Burge.21666	0	.	72181627	72181942	0	1	315	0
chr17	72289973	72290666	REMC_LuminalBreast.73029	0	.	72289973	72290666	0	1	693	0
chr17	72290032	72291477	HepG2_Caltech_ENCODE.27249	0	.	72290032	72291477	0	1	1445	0
chr17	72290181	72292096	H1_polyA+.84807	0	.	72290181	72292096	0	1	1915	0
chr17	72290201	72291955	B_cells_Cheung.140607	0	.	72290201	72291955	0	1	1754	0
chr17	72290776	72293604	REMC_LuminalBreast.73030	0	.	72290776	72293604	0	1	2828	0
chr17	72292055	72293839	B_cells_Cheung.140608	0	.	72292055	72293839	0	1	1784	0
chr17	72292194	72293814	H1_polyA+.84454	0	.	72292194	72293814	0	1	1620	0
chr17	72292201	72293506	CD4_Plagnol_activated.47042	0	.	72292201	72293506	0	1	1305	0
chr17	72292212	72293479	brain_AmbionMAQC.32061	0	.	72292212	72293479	0	1	1267	0
chr17	72292258	72293233	REMC_MyoepithelialBreast.67298	0	.	72292258	72293233	0	1	975	0
chr17	72292417	72293382	HeLa_polyA+_Chen.26310	0	.	72292417	72293382	0	1	965	0
chr17	72292459	72293493	melanoma_Garraway_short_term_cultures.49644	0	.	72292459	72293493	0	1	1034	0
chr17	72292661	72293263	K562.32479	0	.	72292661	72293263	0	1	602	0
chr17	72292692	72293255	ZR751_Thompson.17669	0	.	72292692	72293255	0	1	563	0
chr17	72293847	72294828	K562.32480	0	.	72293847	72294828	0	1	981	0
chr17	72293913	72297775	REMC_LuminalBreast.73031	0	.	72293913	72297775	0	1	3862	0
chr17	72293956	72294934	REMC_MyoepithelialBreast.67299	0	.	72293956	72294934	0	1	978	0
chr17	72293980	72294836	H1_polyA+.84455	0	.	72293980	72294836	0	1	856	0
chr17	72294009	72294795	CD4_Plagnol_activated.47044	0	.	72294009	72294795	0	1	786	0
chr17	72294038	72294908	B_cells_Cheung.140609	0	.	72294038	72294908	0	1	870	0
chr17	72294072	72294933	brain_AmbionMAQC.32062	0	.	72294072	72294933	0	1	861	0
chr17	72294082	72294533	CD4_Plagnol_resting.46099	0	.	72294082	72294533	0	1	451	0
chr17	72294087	72294820	MIP101.50080	0	.	72294087	72294820	0	1	733	0
chr17	72294093	72294843	melanoma_Garraway_short_term_cultures.49645	0	.	72294093	72294843	0	1	750	0
chr17	72294093	72305374	prostate_carcinoma.71914	0	+	72294093	72305374	0	2	410,77	0,11204
chr17	72294110	72294787	MCF10A_Thompson.15668	0	.	72294110	72294787	0	1	677	0
chr17	72294110	72295668	liver_polyA+.97646	0	+	72294110	72295668	0	2	418,200	0,1358
chr17	72294147	72295522	kidney_Gilad.63230	0	+	72294147	72295522	0	2	381,54	0,1321
chr17	72294161	72294516	H9_polyA+.32443	0	.	72294161	72294516	0	1	355	0
chr17	72295066	72296294	H1_polyA+.84456	0	.	72295066	72296294	0	1	1228	0
chr17	72295072	72296590	B_cells_Cheung.140610	0	.	72295072	72296590	0	1	1518	0
chr17	72295077	72295989	CD4_Plagnol_activated.47045	0	.	72295077	72295989	0	1	912	0
chr17	72295079	72296061	brain_AmbionMAQC.32063	0	.	72295079	72296061	0	1	982	0
chr17	72295118	72296167	REMC_MyoepithelialBreast.67300	0	.	72295118	72296167	0	1	1049	0
chr17	72295138	72296011	HepG2_Caltech_ENCODE.26922	0	.	72295138	72296011	0	1	873	0
chr17	72295242	72296119	HeLa_polyA+_Chen.26309	0	.	72295242	72296119	0	1	877	0
chr17	72304112	72304453	CD4_Plagnol_resting.45923	0	.	72304112	72304453	0	1	341	0
chr17	72306720	72314779	HIT000012114	0	+	72306720	72314779	0	3	501,1769,815	0,5141,7244
chr17	72314764	72330731	Rinn_00025498	0	+	72314764	72330731	0	2	568,192	0,15775
chr17	72333620	72334379	H1_polyA+.84459	0	.	72333620	72334379	0	1	759	0
chr17	72339596	72340471	H1_polyA+.84460	0	.	72339596	72340471	0	1	875	0
chr17	72340643	72343038	H1_polyA+.84461	0	.	72340643	72343038	0	1	2395	0
chr17	72340734	72341501	prostate_carcinoma.71648	0	.	72340734	72341501	0	1	767	0
chr17	72341683	72342479	prostate_carcinoma.71649	0	.	72341683	72342479	0	1	796	0
chr17	72345532	72345943	B_cells_Cheung.140628	0	.	72345532	72345943	0	1	411	0
chr17	72345743	72347374	H1_polyA+.84462	0	.	72345743	72347374	0	1	1631	0
chr17	72346008	72346489	B_cells_Cheung.140629	0	.	72346008	72346489	0	1	481	0
chr17	72346872	72347403	B_cells_Cheung.140631	0	.	72346872	72347403	0	1	531	0
chr17	72348048	72349237	H1_polyA+.84463	0	.	72348048	72349237	0	1	1189	0
chr17	72351480	72352042	prostate_carcinoma.71651	0	.	72351480	72352042	0	1	562	0
chr17	72356178	72356741	prostate_carcinoma.71650	0	.	72356178	72356741	0	1	563	0
chr17	72357605	72358391	prostate_carcinoma.71652	0	.	72357605	72358391	0	1	786	0
chr17	72357852	72369526	HIT000095140	0	+	72357852	72369526	0	2	498,374	0,11300
chr17	72459613	72468720	H1_polyA+.84465	0	.	72459613	72468720	0	1	9107	0
chr17	72460991	72462218	CD4_Plagnol_resting.45926	0	.	72460991	72462218	0	1	1227	0
chr17	72461211	72461905	CD4_Plagnol_activated.47048	0	.	72461211	72461905	0	1	694	0
chr17	72466527	72467003	CD4_Plagnol_activated.47049	0	.	72466527	72467003	0	1	476	0
chr17	72466695	72467006	A549_Myers.61693	0	.	72466695	72467006	0	1	311	0
chr17	72470239	72470859	H9_polyA+.32453	0	.	72470239	72470859	0	1	620	0
chr17	72474050	72474667	H1_polyA+.84481	0	.	72474050	72474667	0	1	617	0
chr17	72490669	72491088	A549_Myers.61697	0	.	72490669	72491088	0	1	419	0
chr17	72495236	72495761	A549_Myers.61698	0	.	72495236	72495761	0	1	525	0
chr17	72504066	72504894	B_Cells_Pritchard.2324435	0	.	72504066	72504894	0	1	828	0
chr17	72509060	72509945	B_Cells_Pritchard.2324451	0	.	72509060	72509945	0	1	885	0
chr17	72509763	72510137	A549_Myers.61699	0	.	72509763	72510137	0	1	374	0
chr17	72562542	72563703	A549_Myers.61707	0	.	72562542	72563703	0	1	1161	0
chr17	72563476	72564019	B_Cells_Pritchard.2324645	0	.	72563476	72564019	0	1	543	0
chr17	72563947	72564386	A549_Myers.61708	0	.	72563947	72564386	0	1	439	0
chr17	72595686	72596100	A549_Myers.61712	0	.	72595686	72596100	0	1	414	0
chr17	72599738	72603381	prostate_carcinoma.71665	0	-	72599738	72603381	0	2	27,963	0,2680
chr17	72600545	72604993	B_cells_Cheung.140635	0	.	72600545	72604993	0	1	4448	0
chr17	72602412	72604410	CD4_Plagnol_activated.47056	0	.	72602412	72604410	0	1	1998	0
chr17	72604158	72604979	HepG2_Caltech_ENCODE.26928	0	.	72604158	72604979	0	1	821	0
chr17	72604218	72604978	MIP101.49934	0	.	72604218	72604978	0	1	760	0
chr17	72605107	72605918	B_cells_Cheung.140637	0	.	72605107	72605918	0	1	811	0
chr17	72605216	72605733	CD4_Plagnol_resting.45936	0	.	72605216	72605733	0	1	517	0
chr17	72605237	72605837	BT474_Burge_Thompson.24947	0	.	72605237	72605837	0	1	600	0
chr17	72605246	72605646	prostate_normal.42251	0	.	72605246	72605646	0	1	400	0
chr17	72605253	72605926	CD4_Plagnol_activated.47058	0	.	72605253	72605926	0	1	673	0
chr17	72605289	72605841	H1_polyA+.84489	0	.	72605289	72605841	0	1	552	0
chr17	72605302	72605725	melanoma_Garraway_short_term_cultures.49673	0	.	72605302	72605725	0	1	423	0
chr17	72605309	72605912	HepG2_Caltech_ENCODE.26929	0	.	72605309	72605912	0	1	603	0
chr17	72607407	72608090	melanoma_Garraway_short_term_cultures.49674	0	.	72607407	72608090	0	1	683	0
chr17	72607421	72608096	MIP101.49935	0	.	72607421	72608096	0	1	675	0
chr17	72614420	72615593	CD4_Plagnol_activated.47063	0	.	72614420	72615593	0	1	1173	0
chr17	72614512	72615602	MIP101.49940	0	.	72614512	72615602	0	1	1090	0
chr17	72615153	72616131	REMC_MyoepithelialBreast.67315	0	.	72615153	72616131	0	1	978	0
chr17	72616799	72618684	H1_polyA+.84494	0	.	72616799	72618684	0	1	1885	0
chr17	72621273	72622203	REMC_BreastStem.36955	0	.	72621273	72622203	0	1	930	0
chr17	72621402	72622267	B_Cells_Pritchard.2324813	0	+	72621402	72622267	0	1	865	0
chr17	72622982	72624776	B_cells_Cheung.140643	0	.	72622982	72624776	0	1	1794	0
chr17	72623082	72624750	H1_polyA+.84498	0	.	72623082	72624750	0	1	1668	0
chr17	72623624	72624746	B_Cells_Pritchard.2324829	0	.	72623624	72624746	0	1	1122	0
chr17	72623841	72624750	prostate_carcinoma.71669	0	.	72623841	72624750	0	1	909	0
chr17	72623895	72624784	REMC_MyoepithelialBreast.67320	0	.	72623895	72624784	0	1	889	0
chr17	72623980	72624750	CD4_Plagnol_activated.47068	0	.	72623980	72624750	0	1	770	0
chr17	72624726	72625784	REMC_BreastStem.36956	0	.	72624726	72625784	0	1	1058	0
chr17	72624879	72628194	B_cells_Cheung.140644	0	.	72624879	72628194	0	1	3315	0
chr17	72624886	72626900	B_Cells_Pritchard.2324831	0	.	72624886	72626900	0	1	2014	0
chr17	72628441	72629084	B_cells_Cheung.140645	0	.	72628441	72629084	0	1	643	0
chr17	72628445	72629039	MIP101.49947	0	.	72628445	72629039	0	1	594	0
chr17	72628448	72628958	prostate_carcinoma.71672	0	.	72628448	72628958	0	1	510	0
chr17	72629300	72630724	H1_polyA+.84501	0	.	72629300	72630724	0	1	1424	0
chr17	72629311	72630847	B_cells_Cheung.140646	0	.	72629311	72630847	0	1	1536	0
chr17	72630162	72630727	REMC_MyoepithelialBreast.67324	0	.	72630162	72630727	0	1	565	0
chr17	72630187	72630609	B_Cells_Pritchard.2324845	0	.	72630187	72630609	0	1	422	0
chr17	72630354	72630710	MIP101.49949	0	.	72630354	72630710	0	1	356	0
chr17	72633889	72634637	REMC_MyoepithelialBreast.67326	0	.	72633889	72634637	0	1	748	0
chr17	72633899	72634585	H1_polyA+.84504	0	.	72633899	72634585	0	1	686	0
chr17	72634222	72634592	A549_Myers.61731	0	.	72634222	72634592	0	1	370	0
chr17	72735180	72735817	A549_Myers.61748	0	.	72735180	72735817	0	1	637	0
chr17	72735241	72736862	B_Cells_Pritchard.2325063	0	+	72735241	72736862	0	1	1621	0
chr17	72737086	72738630	REMC_LuminalBreast.72809	0	.	72737086	72738630	0	1	1544	0
chr17	72737996	72738433	B_cells_Cheung.140709	0	.	72737996	72738433	0	1	437	0
chr17	72741226	72741613	A549_Myers.61751	0	.	72741226	72741613	0	1	387	0
chr17	72743075	72743743	B_Cells_Pritchard.2325095	0	+	72743075	72743743	0	1	668	0
chr17	72748773	72749626	B_Cells_Pritchard.2325117	0	.	72748773	72749626	0	1	853	0
chr17	72749964	72750871	B_Cells_Pritchard.2325119	0	.	72749964	72750871	0	1	907	0
chr17	72754333	72754913	B_Cells_Pritchard.2325133	0	.	72754333	72754913	0	1	580	0
chr17	72754436	72755333	A549_Myers.61753	0	.	72754436	72755333	0	1	897	0
chr17	72755892	72756274	A549_Myers.61754	0	.	72755892	72756274	0	1	382	0
chr17	72756407	72757355	B_Cells_Pritchard.2325141	0	.	72756407	72757355	0	1	948	0
chr17	72758614	72762493	A549_Myers.61756	0	-	72758614	72762493	0	2	27,392	0,3487
chr17	72761041	72763009	REMC_MyoepithelialBreast.67331	0	.	72761041	72763009	0	1	1968	0
chr17	72761058	72762342	REMC_LuminalBreast.72811	0	.	72761058	72762342	0	1	1284	0
chr17	72761161	72762292	B_Cells_Pritchard.2325165	0	.	72761161	72762292	0	1	1131	0
chr17	72761449	72778192	Rinn_00025500	0	+	72761449	72778192	0	3	749,125,323	0,13459,16420
chr17	72761529	72765833	Rinn_00025501	0	+	72761529	72765833	0	2	669,534	0,3770
chr17	72761933	72775022	testes_Burge.38900	0	+	72761933	72775022	0	2	265,113	0,12976
chr17	72764500	72765122	B_Cells_Pritchard.2325179	0	.	72764500	72765122	0	1	622	0
chr17	72764649	72765095	prostate_carcinoma.71692	0	.	72764649	72765095	0	1	446	0
chr17	72769158	72769465	B_Cells_Pritchard.2325195	0	+	72769158	72769465	0	1	307	0
chr17	72773747	72781915	REMC_LuminalBreast.72896	0	-	72773747	72781915	0	2	1241,49	0,8119
chr17	72773769	72775022	prostate_carcinoma.71696	0	.	72773769	72775022	0	1	1253	0
chr17	72776283	72777818	REMC_LuminalBreast.72897	0	.	72776283	72777818	0	1	1535	0
chr17	72777195	72778482	prostate_carcinoma.71698	0	.	72777195	72778482	0	1	1287	0
chr17	72777195	72784215	prostate_carcinoma.71697	0	-	72777195	72784215	0	2	1023,384	0,6636
chr17	72777273	72777736	T47D_Burge_Thompson.21530	0	.	72777273	72777736	0	1	463	0
chr17	72777510	72777944	B_cells_Cheung.140716	0	.	72777510	72777944	0	1	434	0
chr17	72777586	72778711	REMC_MyoepithelialBreast.67332	0	.	72777586	72778711	0	1	1125	0
chr17	72781279	72781642	prostate_carcinoma.71703	0	.	72781279	72781642	0	1	363	0
chr17	72781770	72782477	prostate_carcinoma.71702	0	.	72781770	72782477	0	1	707	0
chr17	72785486	72786699	REMC_LuminalBreast.72899	0	.	72785486	72786699	0	1	1213	0
chr17	72786934	72787672	B_cells_Cheung.140721	0	.	72786934	72787672	0	1	738	0
chr17	72786938	72787608	prostate_carcinoma.71706	0	.	72786938	72787608	0	1	670	0
chr17	73009428	73010546	REMC_LuminalBreast.72847	0	.	73009428	73010546	0	1	1118	0
chr17	73009757	73011302	CD4_Plagnol_resting.46362	0	.	73009757	73011302	0	1	1545	0
chr17	73009919	73011208	melanoma_Garraway_short_term_cultures.49750	0	.	73009919	73011208	0	1	1289	0
chr17	73010789	73011240	B_cells_Cheung.140758	0	.	73010789	73011240	0	1	451	0
chr17	73011620	73013467	CD4_Plagnol_resting.46363	0	.	73011620	73013467	0	1	1847	0
chr17	73011625	73012058	melanoma_Garraway_short_term_cultures.49751	0	.	73011625	73012058	0	1	433	0
chr17	73011668	73012102	B_Cells_Pritchard.2335549	0	+	73011668	73012102	0	1	434	0
chr17	73011790	73012746	B_cells_Cheung.140759	0	.	73011790	73012746	0	1	956	0
chr17	73012810	73013415	B_cells_Cheung.140760	0	.	73012810	73013415	0	1	605	0
chr17	73014140	73082050	pHIT000117752	0	-	73014140	73082050	0	3	110,193,87	0,742,67823
chr17	73015681	73016242	B_cells_Cheung.140763	0	.	73015681	73016242	0	1	561	0
chr17	73015734	73016399	A549_Myers.61895	0	.	73015734	73016399	0	1	665	0
chr17	73016328	73018050	melanoma_Garraway_short_term_cultures.49752	0	.	73016328	73018050	0	1	1722	0
chr17	73016566	73017965	REMC_LuminalBreast.72849	0	.	73016566	73017965	0	1	1399	0
chr17	73017877	73018213	A549_Myers.61896	0	.	73017877	73018213	0	1	336	0
chr17	73035801	73044284	HIT000096054	0	+	73035801	73044284	0	4	3685,169,233,368	0,4973,6330,8115
chr17	73036154	73036811	A549_Myers.61898	0	.	73036154	73036811	0	1	657	0
chr17	73036182	73037260	brain_AmbionMAQC.32094	0	.	73036182	73037260	0	1	1078	0
chr17	73054617	73070920	HIT000021089	0	-	73054617	73070920	0	2	152,2299	0,14004
chr17	73054678	73076367	Rinn_00025504	0	+	73054678	73076367	0	4	91,128,149,7747	0,13467,13693,13942
chr17	73055727	73077785	prostate_carcinoma.71779	0	-	73055727	73077785	0	5	2138,88,2220,2876,132	0,14524,14718,17099,21926
chr17	73055733	73058037	prostate_normal.42337	0	.	73055733	73058037	0	1	2304	0
chr17	73055754	73057895	H1_polyA+.84531	0	.	73055754	73057895	0	1	2141	0
chr17	73059926	73061123	H1_polyA+.84533	0	.	73059926	73061123	0	1	1197	0
chr17	73059932	73060931	prostate_normal.42339	0	.	73059932	73060931	0	1	999	0
chr17	73059981	73062571	HIT000049536	0	-	73059981	73062571	0	1	2590	0
chr17	73062655	73064890	prostate_normal.42343	0	.	73062655	73064890	0	1	2235	0
chr17	73062975	73088696	pHIT000030332	0	-	73062975	73088696	0	5	26,40,151,87,56	0,14820,15024,18988,25665
chr17	73063548	73064911	H1_polyA+.84535	0	.	73063548	73064911	0	1	1363	0
chr17	73063923	73064546	A549_Myers.61906	0	.	73063923	73064546	0	1	623	0
chr17	73065156	73068905	H1_polyA+.84536	0	+	73065156	73068905	0	2	3364,284	0,3465
chr17	73065181	73076586	prostate_normal.42341	0	-	73065181	73076586	0	7	3703,18,106,106,2195,108,404	0,3709,4840,5052,5264,10447,11001
chr17	73065817	73070920	Rinn_00025130	0	+	73065817	73070920	0	3	2456,149,2300	0,2554,2803
chr17	73065817	73070669	Rinn_00025200	0	+	73065817	73070669	0	4	2456,149,1788,93	0,2554,2803,4759
chr17	73065818	73070920	HIT000050197	0	+	73065818	73070920	0	4	2455,148,1141,1104	0,2554,2803,3998
chr17	73065818	73070669	ENST00000510484	0	+	73065818	73070669	0	4	2455,148,1787,92	0,2554,2803,4759
chr17	73069978	73072711	HIT000087527	0	+	73069978	73072711	0	1	2733	0
chr17	73070212	73071049	H9_polyA+.32470	0	.	73070212	73071049	0	1	837	0
chr17	73070226	73075948	H1_polyA+.84538	0	.	73070226	73075948	0	1	5722	0
chr17	73070468	73076367	brain_AmbionMAQC.32099	0	.	73070468	73076367	0	1	5899	0
chr17	73071044	73076372	HIT000014591	0	-	73071044	73076372	0	2	1577,190	0,5138
chr17	73071140	73072600	H9_polyA+.32471	0	.	73071140	73072600	0	1	1460	0
chr17	73072810	73073790	H9_polyA+.32472	0	.	73072810	73073790	0	1	980	0
chr17	73072840	73078587	prostate_normal.42344	0	+	73072840	73078587	0	2	1034,47	0,5700
chr17	73080278	73080850	A549_Myers.61907	0	.	73080278	73080850	0	1	572	0
chr17	73082009	73082675	H1_polyA+.84540	0	.	73082009	73082675	0	1	666	0
chr17	73084935	73085418	B_Cells_Pritchard.2325975	0	.	73084935	73085418	0	1	483	0
chr17	73087332	73087891	prostate_carcinoma.71781	0	.	73087332	73087891	0	1	559	0
chr17	73098341	73101864	prostate_carcinoma.71785	0	.	73098341	73101864	0	1	3523	0
chr17	73103695	73104511	prostate_carcinoma.71787	0	.	73103695	73104511	0	1	816	0
chr17	73174667	73188005	CD4_Snyder.54085	0	+	73174667	73188005	0	2	198,721	0,12617
chr17	73174672	73175499	B_Cells_Pritchard.2326275	0	.	73174672	73175499	0	1	827	0
chr17	73174763	73215727	pHIT000117755	0	+	73174763	73215727	0	3	102,142,104	0,5967,40860
chr17	73185430	73185966	CD4_Snyder.54088	0	.	73185430	73185966	0	1	536	0
chr17	73186754	73188214	B_Cells_Pritchard.2326305	0	.	73186754	73188214	0	1	1460	0
chr17	73186755	73188192	CD4_Plagnol_activated.47127	0	.	73186755	73188192	0	1	1437	0
chr17	73186879	73188320	B_cells_Cheung.140766	0	.	73186879	73188320	0	1	1441	0
chr17	73186903	73188077	CD4_Plagnol_resting.46016	0	.	73186903	73188077	0	1	1174	0
chr17	73187287	73188073	prostate_carcinoma.71789	0	.	73187287	73188073	0	1	786	0
chr17	73205604	73205917	A549_Myers.61913	0	.	73205604	73205917	0	1	313	0
chr17	73208397	73210401	H1_polyA+.84543	0	.	73208397	73210401	0	1	2004	0
chr17	73226075	73226486	A549_Myers.61916	0	.	73226075	73226486	0	1	411	0
chr17	73226075	73226774	A549_Myers.61915	0	-	73226075	73226774	0	2	298,207	0,492
chr17	73230547	73236236	Rinn_00025254	0	-	73230547	73236236	0	2	2132,151	0,5538
chr17	73230548	73236236	ENST00000504504	0	-	73230548	73236236	0	2	2131,150	0,5538
chr17	73230548	73236236	HIT000047770	0	-	73230548	73236236	0	2	2131,150	0,5538
chr17	73232507	73232876	A549_Myers.61918	0	.	73232507	73232876	0	1	369	0
chr17	73234157	73234576	A549_Myers.61919	0	.	73234157	73234576	0	1	419	0
chr17	73242731	73245274	A549_Myers.61921	0	-	73242731	73245274	0	2	281,94	0,2449
chr17	73258390	73258828	A549_Myers.61922	0	.	73258390	73258828	0	1	438	0
chr17	73276070	73292089	pHIT000117756	0	-	73276070	73292089	0	5	30,129,41,98,206	0,1364,2294,5819,15813
chr17	73280077	73280878	A549_Myers.61924	0	.	73280077	73280878	0	1	801	0
chr17	73286157	73286853	A549_Myers.61925	0	.	73286157	73286853	0	1	696	0
chr17	73287402	73287793	A549_Myers.61926	0	.	73287402	73287793	0	1	391	0
chr17	73293741	73301933	H1_polyA+.84544	0	+	73293741	73301933	0	3	1481,345,1163	0,3085,7029
chr17	73293741	73295718	H1_polyA+.84545	0	.	73293741	73295718	0	1	1977	0
chr17	73296037	73296345	A549_Myers.61928	0	.	73296037	73296345	0	1	308	0
chr17	73296038	73296774	H1_polyA+.84547	0	.	73296038	73296774	0	1	736	0
chr17	73299111	73299638	H1_polyA+.84549	0	.	73299111	73299638	0	1	527	0
chr17	73300641	73301933	H1_polyA+.84546	0	.	73300641	73301933	0	1	1292	0
chr17	73300892	73301961	H9_polyA+.32474	0	.	73300892	73301961	0	1	1069	0
chr17	73312503	73312880	A549_Myers.61932	0	.	73312503	73312880	0	1	377	0
chr17	73359376	73359962	A549_Myers.61942	0	+	73359376	73359962	0	2	261,237	0,349
chr17	73371748	73373641	prostate_carcinoma.71790	0	.	73371748	73373641	0	1	1893	0
chr17	73371750	73373499	MIP101.49967	0	.	73371750	73373499	0	1	1749	0
chr17	73375895	73376448	A549_Myers.61945	0	.	73375895	73376448	0	1	553	0
chr17	73399807	73400219	A549_Myers.61951	0	.	73399807	73400219	0	1	412	0
chr17	73401833	73402321	A549_Myers.61953	0	.	73401833	73402321	0	1	488	0
chr17	73414257	73414746	A549_Myers.61954	0	.	73414257	73414746	0	1	489	0
chr17	73415298	73415669	A549_Myers.61955	0	.	73415298	73415669	0	1	371	0
chr17	73416705	73417480	H1_polyA+.84550	0	.	73416705	73417480	0	1	775	0
chr17	73426728	73427625	H1_polyA+.84552	0	.	73426728	73427625	0	1	897	0
chr17	73428777	73429176	B_Cells_Pritchard.2327035	0	.	73428777	73429176	0	1	399	0
chr17	73431326	73433224	H1_polyA+.84553	0	.	73431326	73433224	0	1	1898	0
chr17	73435492	73438389	MIP101.49969	0	.	73435492	73438389	0	1	2897	0
chr17	73437174	73437775	B_Cells_Pritchard.2327069	0	.	73437174	73437775	0	1	601	0
chr17	73438755	73439613	H1_polyA+.84555	0	.	73438755	73439613	0	1	858	0
chr17	73442374	73442990	MIP101.49971	0	.	73442374	73442990	0	1	616	0
chr17	73443949	73444952	H1_polyA+.84556	0	.	73443949	73444952	0	1	1003	0
chr17	73449424	73450718	H1_polyA+.84558	0	.	73449424	73450718	0	1	1294	0
chr17	73754507	73755530	H1_polyA+.84625	0	.	73754507	73755530	0	1	1023	0
chr17	73762614	73765499	HIT000098121	0	-	73762614	73765499	0	1	2885	0
chr17	73762911	73766768	prostate_normal.42364	0	+	73762911	73766768	0	2	559,235	0,3622
chr17	73762993	73763351	K562.32490	0	.	73762993	73763351	0	1	358	0
chr17	73763106	73763427	liver_polyA+.97934	0	.	73763106	73763427	0	1	321	0
chr17	73763784	73764602	prostate_carcinoma.71824	0	.	73763784	73764602	0	1	818	0
chr17	73763940	73764575	K562.32491	0	.	73763940	73764575	0	1	635	0
chr17	73763982	73764314	A549_Myers.62042	0	.	73763982	73764314	0	1	332	0
chr17	73763985	73764297	liver_polyA+.97935	0	.	73763985	73764297	0	1	312	0
chr17	73764498	73764958	prostate_normal.42365	0	.	73764498	73764958	0	1	460	0
chr17	73764976	73765477	A549_Myers.62043	0	.	73764976	73765477	0	1	501	0
chr17	73765025	73766143	prostate_normal.42366	0	.	73765025	73766143	0	1	1118	0
chr17	73765102	73765439	B_Cells_Pritchard.2327473	0	.	73765102	73765439	0	1	337	0
chr17	73765716	73766135	A549_Myers.62044	0	.	73765716	73766135	0	1	419	0
chr17	73795676	73795980	A549_Myers.62052	0	.	73795676	73795980	0	1	304	0
chr17	73796298	73798173	liver_polyA+.97939	0	-	73796298	73798173	0	2	41,268	0,1607
chr17	73797514	73798144	A549_Myers.62053	0	.	73797514	73798144	0	1	630	0
chr17	73808399	73808936	A549_Myers.62057	0	.	73808399	73808936	0	1	537	0
chr17	73809470	73810323	B_Cells_Pritchard.2327641	0	.	73809470	73810323	0	1	853	0
chr17	73812230	73812666	A549_Myers.62059	0	.	73812230	73812666	0	1	436	0
chr17	73821345	73822292	A549_Myers.62060	0	.	73821345	73822292	0	1	947	0
chr17	73821541	73851749	pHIT000117782	0	+	73821541	73851749	0	3	596,102,109	0,29945,30099
chr17	73821541	73856023	pHIT000117777	0	+	73821541	73856023	0	4	596,64,94,80	0,29945,33840,34402
chr17	73821541	73851749	pHIT000030361	0	+	73821541	73851749	0	3	409,64,109	0,29945,30099
chr17	73821541	73854214	pHIT000030363	0	+	73821541	73854214	0	3	409,64,88	0,29945,32585
chr17	73821541	73855475	pHIT000090204	0	+	73821541	73855475	0	3	596,64,94	0,29945,33840
chr17	73822621	73824727	B_Cells_Pritchard.2327693	0	-	73822621	73824727	0	1	2106	0
chr17	73823367	73824585	MIP101.49996	0	.	73823367	73824585	0	1	1218	0
chr17	73823522	73824033	HeLa_polyA-_Chen.14298	0	.	73823522	73824033	0	1	511	0
chr17	73823572	73824877	HeLa_polyA+_Chen.26346	0	.	73823572	73824877	0	1	1305	0
chr17	73823587	73824516	A549_Myers.62062	0	.	73823587	73824516	0	1	929	0
chr17	73823642	73825261	REMC_LuminalBreast.72880	0	.	73823642	73825261	0	1	1619	0
chr17	73824711	73825286	MIP101.49997	0	.	73824711	73825286	0	1	575	0
chr17	73824936	73826046	A549_Myers.62063	0	.	73824936	73826046	0	1	1110	0
chr17	73824952	73825296	HeLa_polyA+_Chen.26347	0	.	73824952	73825296	0	1	344	0
chr17	73825354	73826657	HeLa_polyA+_Chen.26348	0	.	73825354	73826657	0	1	1303	0
chr17	73825595	73826757	MIP101.49998	0	.	73825595	73826757	0	1	1162	0
chr17	73826875	73827280	A549_Myers.62064	0	.	73826875	73827280	0	1	405	0
chr17	73829970	73831166	REMC_BreastStem.37057	0	.	73829970	73831166	0	1	1196	0
chr17	73830556	73831007	B_cells_Cheung.140787	0	.	73830556	73831007	0	1	451	0
chr17	73831872	73832279	ZR751_Thompson.17709	0	.	73831872	73832279	0	1	407	0
chr17	73831887	73834163	MIP101.50001	0	.	73831887	73834163	0	1	2276	0
chr17	73831891	73832198	B_Cells_Pritchard.2327725	0	-	73831891	73832198	0	1	307	0
chr17	73832048	73833093	REMC_MyoepithelialBreast.67432	0	.	73832048	73833093	0	1	1045	0
chr17	73832804	73834215	REMC_BreastStem.37058	0	.	73832804	73834215	0	1	1411	0
chr17	73833324	73834017	HeLa_polyA+_Chen.26351	0	.	73833324	73834017	0	1	693	0
chr17	73836178	73836554	B_cells_Cheung.140792	0	.	73836178	73836554	0	1	376	0
chr17	73838516	73838937	B_cells_Cheung.140793	0	.	73838516	73838937	0	1	421	0
chr17	73839695	73840341	B_cells_Cheung.140794	0	.	73839695	73840341	0	1	646	0
chr17	73847796	73849076	REMC_LuminalBreast.72884	0	.	73847796	73849076	0	1	1280	0
chr17	73848191	73848585	A549_Myers.62069	0	.	73848191	73848585	0	1	394	0
chr17	73849144	73849452	A549_Myers.62070	0	.	73849144	73849452	0	1	308	0
chr17	73850804	73852017	REMC_LuminalBreast.72885	0	.	73850804	73852017	0	1	1213	0
chr17	73851140	73851974	MIP101.50003	0	.	73851140	73851974	0	1	834	0
chr17	73852159	73854088	BT20_Thompson.15798	0	.	73852159	73854088	0	1	1929	0
chr17	73852171	73854275	B_cells_Cheung.140799	0	.	73852171	73854275	0	1	2104	0
chr17	73852173	73854237	MIP101.50002	0	.	73852173	73854237	0	1	2064	0
chr17	73852181	73854935	H1_polyA+.84630	0	.	73852181	73854935	0	1	2754	0
chr17	73852188	73855760	REMC_LuminalBreast.72886	0	.	73852188	73855760	0	1	3572	0
chr17	73852199	73861969	prostate_normal.42369	0	-	73852199	73861969	0	2	1634,71	0,9699
chr17	73852261	73854040	HeLa_polyA+_Chen.26355	0	.	73852261	73854040	0	1	1779	0
chr17	73852979	73854867	REMC_MyoepithelialBreast.67434	0	.	73852979	73854867	0	1	1888	0
chr17	73854036	73855720	REMC_BreastStem.37081	0	.	73854036	73855720	0	1	1684	0
chr17	73854107	73854924	CD4_Plagnol_activated.47198	0	.	73854107	73854924	0	1	817	0
chr17	73855863	73860518	REMC_LuminalBreast.72887	0	.	73855863	73860518	0	1	4655	0
chr17	73859173	73859955	REMC_BreastStem.37083	0	.	73859173	73859955	0	1	782	0
chr17	73859306	73859779	A549_Myers.62078	0	.	73859306	73859779	0	1	473	0
chr17	73859403	73860593	REMC_MyoepithelialBreast.67437	0	.	73859403	73860593	0	1	1190	0
chr17	73860057	73860638	B_Cells_Pritchard.2327815	0	-	73860057	73860638	0	1	581	0
chr17	73860136	73861506	A549_Myers.62080	0	+	73860136	73861506	0	2	1144,119	0,1251
chr17	73860136	73861506	A549_Myers.62079	0	.	73860136	73861506	0	1	1370	0
chr17	73861644	73861977	B_cells_Cheung.140804	0	.	73861644	73861977	0	1	333	0
chr17	73868114	73872802	Rinn_00025512	0	+	73868114	73872802	0	3	335,80,631	0,2233,4057
chr17	73868201	73872597	HeLa_polyA+_Chen.26356	0	+	73868201	73872597	0	3	248,320,425	0,2147,3971
chr17	73869357	73872580	K562.32503	0	+	73869357	73872580	0	3	140,79,408	0,991,2815
chr17	73869922	73872616	REMC_LuminalBreast.72890	0	+	73869922	73872616	0	2	505,444	0,2250
chr17	73869922	73872616	REMC_LuminalBreast.72891	0	.	73869922	73872616	0	1	2694	0
chr17	73870172	73872610	B_cells_Cheung.140811	0	+	73870172	73872610	0	2	255,438	0,2000
chr17	73870363	73872608	MDAMB468_Thompson.17519	0	+	73870363	73872608	0	2	64,436	0,1809
chr17	73871887	73872603	melanoma_Garraway_short_term_cultures.49801	0	.	73871887	73872603	0	1	716	0
chr17	73874126	73874480	A549_Myers.62085	0	.	73874126	73874480	0	1	354	0
chr17	73874189	73874527	H9_polyA+.32517	0	.	73874189	73874527	0	1	338	0
chr17	73875572	73876464	REMC_LuminalBreast.72892	0	.	73875572	73876464	0	1	892	0
chr17	73876047	73876361	A549_Myers.62086	0	.	73876047	73876361	0	1	314	0
chr17	73877721	73878452	REMC_LuminalBreast.72893	0	.	73877721	73878452	0	1	731	0
chr17	73879673	73881500	H1_polyA+.84635	0	.	73879673	73881500	0	1	1827	0
chr17	73880176	73881006	H9_polyA+.32601	0	.	73880176	73881006	0	1	830	0
chr17	73880205	73880832	REMC_LuminalBreast.72894	0	.	73880205	73880832	0	1	627	0
chr17	73880354	73880695	MCF7_Burge_Thompson.23372	0	.	73880354	73880695	0	1	341	0
chr17	73881118	73881516	H9_polyA+.32603	0	.	73881118	73881516	0	1	398	0
chr17	74109684	74110253	A549_Myers.62174	0	.	74109684	74110253	0	1	569	0
chr17	74111820	74112607	A549_Myers.62175	0	.	74111820	74112607	0	1	787	0
chr17	74116439	74138114	HeLa_polyA+_Chen.26395	0	-	74116439	74138114	0	5	351,230,362,121,406	0,8634,15191,19555,21269
chr17	74119048	74139887	B_Cells_Pritchard.2328479	0	-	74119048	74139887	0	4	132,3180,399,262	0,9764,18660,20577
chr17	74124460	74125771	REMC_LuminalBreast.72933	0	.	74124460	74125771	0	1	1311	0
chr17	74124797	74127304	B_cells_Cheung.140849	0	.	74124797	74127304	0	1	2507	0
chr17	74125067	74126287	MIP101.50020	0	.	74125067	74126287	0	1	1220	0
chr17	74125069	74126947	CD4_Plagnol_activated.47225	0	.	74125069	74126947	0	1	1878	0
chr17	74125074	74138240	HepG2_Caltech_ENCODE.27043	0	-	74125074	74138240	0	3	1647,124,532	0,6794,12634
chr17	74125074	74128155	HepG2_Caltech_ENCODE.27042	0	.	74125074	74128155	0	1	3081	0
chr17	74125083	74126066	CD4_Plagnol_resting.46112	0	.	74125083	74126066	0	1	983	0
chr17	74125084	74136191	HeLa_Bartel_miR-155_12hr.24372	0	-	74125084	74136191	0	3	219,124,197	0,6784,10910
chr17	74125467	74126052	HeLa_polyA+_Chen.26396	0	.	74125467	74126052	0	1	585	0
chr17	74126145	74126758	HeLa_polyA+_Chen.26397	0	.	74126145	74126758	0	1	613	0
chr17	74126595	74152951	pHIT000117789	0	-	74126595	74152951	0	7	126,252,160,145,22,105,6	0,4635,6915,18406,22544,22675,26350
chr17	74126689	74128664	REMC_LuminalBreast.72934	0	.	74126689	74128664	0	1	1975	0
chr17	74128270	74131986	HepG2_Caltech_ENCODE.27044	0	+	74128270	74131986	0	2	423,3186	0,530
chr17	74128422	74139350	B_Cells_Pritchard.2328481	0	+	74128422	74139350	0	3	3828,1785,231	0,8557,10697
chr17	74128789	74131390	B_cells_Cheung.140850	0	.	74128789	74131390	0	1	2601	0
chr17	74129072	74130128	CD4_Plagnol_resting.46113	0	.	74129072	74130128	0	1	1056	0
chr17	74129347	74130437	CD4_Plagnol_activated.47226	0	.	74129347	74130437	0	1	1090	0
chr17	74129558	74130064	HeLa_polyA+_Chen.26401	0	.	74129558	74130064	0	1	506	0
chr17	74130176	74131402	HeLa_polyA+_Chen.26402	0	.	74130176	74131402	0	1	1226	0
chr17	74130199	74130556	MIP101.50025	0	.	74130199	74130556	0	1	357	0
chr17	74131263	74131981	CD4_Plagnol_resting.46114	0	.	74131263	74131981	0	1	718	0
chr17	74131515	74131998	MIP101.50021	0	.	74131515	74131998	0	1	483	0
chr17	74131711	74138468	B_cells_Cheung.140851	0	-	74131711	74138468	0	2	281,760	0,5997
chr17	74134515	74134954	A549_Myers.62178	0	.	74134515	74134954	0	1	439	0
chr17	74136920	74138147	REMC_LuminalBreast.72936	0	.	74136920	74138147	0	1	1227	0
chr17	74137703	74138060	MIP101.50027	0	.	74137703	74138060	0	1	357	0
chr17	74137709	74138110	CD4_Plagnol_resting.46115	0	.	74137709	74138110	0	1	401	0
chr17	74137714	74138131	K562.32528	0	.	74137714	74138131	0	1	417	0
chr17	74152020	74152326	B_Cells_Pritchard.2328555	0	.	74152020	74152326	0	1	306	0
chr17	74152077	74154164	REMC_LuminalBreast.72942	0	.	74152077	74154164	0	1	2087	0
chr17	74154420	74156709	REMC_LuminalBreast.72943	0	.	74154420	74156709	0	1	2289	0
chr17	74154641	74156569	REMC_MyoepithelialBreast.67515	0	.	74154641	74156569	0	1	1928	0
chr17	74154803	74156123	B_Cells_Pritchard.2328567	0	.	74154803	74156123	0	1	1320	0
chr17	74154958	74155657	REMC_BreastStem.37060	0	.	74154958	74155657	0	1	699	0
chr17	74155175	74155613	prostate_carcinoma.71852	0	.	74155175	74155613	0	1	438	0
chr17	74155194	74155861	H1_polyA+.84659	0	.	74155194	74155861	0	1	667	0
chr17	74155471	74155812	A549_Myers.62182	0	.	74155471	74155812	0	1	341	0
chr17	74156791	74159407	REMC_LuminalBreast.72944	0	.	74156791	74159407	0	1	2616	0
chr17	74161088	74162629	REMC_LuminalBreast.72946	0	.	74161088	74162629	0	1	1541	0
chr17	74162904	74163956	REMC_LuminalBreast.72947	0	.	74162904	74163956	0	1	1052	0
chr17	74164334	74166729	REMC_LuminalBreast.72948	0	.	74164334	74166729	0	1	2395	0
chr17	74165044	74166661	REMC_MyoepithelialBreast.67518	0	.	74165044	74166661	0	1	1617	0
chr17	74166898	74168003	REMC_LuminalBreast.72949	0	.	74166898	74168003	0	1	1105	0
chr17	74168652	74170678	REMC_LuminalBreast.72950	0	.	74168652	74170678	0	1	2026	0
chr17	74171651	74173304	REMC_MyoepithelialBreast.67524	0	.	74171651	74173304	0	1	1653	0
chr17	74171652	74177738	REMC_LuminalBreast.72952	0	.	74171652	74177738	0	1	6086	0
chr17	74173386	74174934	REMC_MyoepithelialBreast.67525	0	.	74173386	74174934	0	1	1548	0
chr17	74175240	74175874	REMC_MyoepithelialBreast.67523	0	.	74175240	74175874	0	1	634	0
chr17	74175266	74176255	B_cells_Cheung.140860	0	.	74175266	74176255	0	1	989	0
chr17	74175338	74176280	B_Cells_Pritchard.2328651	0	.	74175338	74176280	0	1	942	0
chr17	74176581	74178585	B_cells_Cheung.140861	0	.	74176581	74178585	0	1	2004	0
chr17	74176637	74178245	B_Cells_Pritchard.2328655	0	.	74176637	74178245	0	1	1608	0
chr17	74176946	74177666	CD4_Plagnol_resting.46120	0	.	74176946	74177666	0	1	720	0
chr17	74176961	74177264	A549_Myers.62186	0	.	74176961	74177264	0	1	303	0
chr17	74177285	74177917	REMC_MyoepithelialBreast.67521	0	.	74177285	74177917	0	1	632	0
chr17	74178352	74179122	B_Cells_Pritchard.2328657	0	.	74178352	74179122	0	1	770	0
chr17	74349872	74353359	REMC_BreastStem.37078	0	.	74349872	74353359	0	1	3487	0
chr17	74350209	74353251	melanoma_Garraway_short_term_cultures.49837	0	.	74350209	74353251	0	1	3042	0
chr17	74350530	74351762	HeLa_polyA+_Chen.26420	0	.	74350530	74351762	0	1	1232	0
chr17	74350555	74353369	B_cells_Cheung.140898	0	.	74350555	74353369	0	1	2814	0
chr17	74350876	74352948	HIT000044234	0	+	74350876	74352948	0	1	2072	0
chr17	74351170	74353272	ZR751_Thompson.17733	0	.	74351170	74353272	0	1	2102	0
chr17	74351553	74353262	CD4_Plagnol_resting.46147	0	.	74351553	74353262	0	1	1709	0
chr17	74351587	74352393	HepG2_Caltech_ENCODE.27049	0	.	74351587	74352393	0	1	806	0
chr17	74351639	74352905	T47D_Burge_Thompson.21461	0	.	74351639	74352905	0	1	1266	0
chr17	74351640	74352907	MCF7_Burge_Thompson.23401	0	.	74351640	74352907	0	1	1267	0
chr17	74351642	74352860	MeWo_Garraway.26621	0	.	74351642	74352860	0	1	1218	0
chr17	74351645	74353040	BT474_Burge_Thompson.24999	0	.	74351645	74353040	0	1	1395	0
chr17	74351715	74352878	MIP101.50054	0	.	74351715	74352878	0	1	1163	0
chr17	74351731	74352849	K562.32540	0	.	74351731	74352849	0	1	1118	0
chr17	74351904	74352910	CD4_Plagnol_activated.47230	0	.	74351904	74352910	0	1	1006	0
chr17	74351908	74352512	MDAMB468_Thompson.17522	0	.	74351908	74352512	0	1	604	0
chr17	74351921	74352563	brain_AmbionMAQC.32185	0	.	74351921	74352563	0	1	642	0
chr17	74352096	74352855	BT20_Thompson.15809	0	.	74352096	74352855	0	1	759	0
chr17	74352372	74352905	H9_polyA+.32574	0	.	74352372	74352905	0	1	533	0
chr17	74352555	74353054	HepG2_Caltech_ENCODE.27050	0	.	74352555	74353054	0	1	499	0
chr17	74435577	74436635	H1_polyA+.84769	0	.	74435577	74436635	0	1	1058	0
chr17	74437538	74438333	A549_Myers.62259	0	.	74437538	74438333	0	1	795	0
chr17	74440234	74443267	A549_Myers.62250	0	+	74440234	74443267	0	2	66,2450	0,583
chr17	74442264	74444098	HIT000043798	0	+	74442264	74444098	0	1	1834	0
chr17	74443454	74443995	A549_Myers.62260	0	.	74443454	74443995	0	1	541	0
chr17	74452124	74452707	A549_Myers.62263	0	.	74452124	74452707	0	1	583	0
chr17	74472141	74472653	MIP101.50056	0	.	74472141	74472653	0	1	512	0
chr17	74474147	74475070	REMC_LuminalBreast.73034	0	.	74474147	74475070	0	1	923	0
chr17	74474261	74475287	A549_Myers.62266	0	.	74474261	74475287	0	1	1026	0
chr17	74474483	74475820	MIP101.50058	0	.	74474483	74475820	0	1	1337	0
chr17	74475170	74476992	REMC_LuminalBreast.73035	0	.	74475170	74476992	0	1	1822	0
chr17	74488809	74490041	MIP101.50090	0	.	74488809	74490041	0	1	1232	0
chr17	74491803	74492522	REMC_BreastStem.37117	0	.	74491803	74492522	0	1	719	0
chr17	74492636	74495212	REMC_BreastStem.37118	0	.	74492636	74495212	0	1	2576	0
chr17	74493106	74496179	CD4_Plagnol_resting.46153	0	+	74493106	74496179	0	2	44,1127	0,1946
chr17	74493364	74496205	B_cells_Cheung.140917	0	.	74493364	74496205	0	1	2841	0
chr17	74493622	74496708	REMC_MyoepithelialBreast.67582	0	.	74493622	74496708	0	1	3086	0
chr17	74493832	74495051	H1_polyA+.84787	0	.	74493832	74495051	0	1	1219	0
chr17	74493994	74495251	CD4_Plagnol_activated.47238	0	.	74493994	74495251	0	1	1257	0
chr17	74558730	74560225	REMC_MyoepithelialBreast.67576	0	.	74558730	74560225	0	1	1495	0
chr17	74561965	74562515	melanoma_Garraway_short_term_cultures.49861	0	.	74561965	74562515	0	1	550	0
chr17	74563634	74567583	REMC_LuminalBreast.73168	0	.	74563634	74567583	0	1	3949	0
chr17	74574688	74576297	REMC_LuminalBreast.73169	0	.	74574688	74576297	0	1	1609	0
chr17	74580249	74580652	A549_Myers.62294	0	.	74580249	74580652	0	1	403	0
chr17	74992623	74993018	A549_Myers.62483	0	.	74992623	74993018	0	1	395	0
chr17	74994364	74995358	brain_AmbionMAQC.32214	0	.	74994364	74995358	0	1	994	0
chr17	74994739	74995306	A549_Myers.62485	0	.	74994739	74995306	0	1	567	0
chr17	75002059	75002866	A549_Myers.62487	0	.	75002059	75002866	0	1	807	0
chr17	75003354	75003806	A549_Myers.62488	0	.	75003354	75003806	0	1	452	0
chr17	75005987	75006806	brain_AmbionMAQC.32216	0	.	75005987	75006806	0	1	819	0
chr17	75006102	75006550	prostate_carcinoma.72039	0	.	75006102	75006550	0	1	448	0
chr17	75042920	75043794	brain_AmbionMAQC.32217	0	.	75042920	75043794	0	1	874	0
chr17	75047974	75048429	A549_Myers.62492	0	.	75047974	75048429	0	1	455	0
chr17	75052056	75052601	B_Cells_Pritchard.2330629	0	.	75052056	75052601	0	1	545	0
chr17	75052238	75054385	brain_AmbionMAQC.32220	0	.	75052238	75054385	0	1	2147	0
chr17	75055191	75055679	A549_Myers.62497	0	.	75055191	75055679	0	1	488	0
chr17	75253834	75254175	MIP101.50085	0	.	75253834	75254175	0	1	341	0
chr17	75255576	75255991	A549_Myers.62500	0	.	75255576	75255991	0	1	415	0
chr17	75256089	75256636	A549_Myers.62501	0	.	75256089	75256636	0	1	547	0
chr17	75256885	75257363	A549_Myers.62502	0	.	75256885	75257363	0	1	478	0
chr17	75260286	75260679	A549_Myers.62503	0	.	75260286	75260679	0	1	393	0
chr17	75266295	75279317	pHIT000117814	0	+	75266295	75279317	0	2	174,135	0,12887
chr17	75268254	75268804	B_Cells_Pritchard.2330761	0	.	75268254	75268804	0	1	550	0
chr17	75269363	75269939	A549_Myers.62505	0	.	75269363	75269939	0	1	576	0
chr17	75272790	75273194	A549_Myers.62507	0	.	75272790	75273194	0	1	404	0
chr17	75279120	75279575	A549_Myers.62509	0	.	75279120	75279575	0	1	455	0
chr17	75279630	75280154	A549_Myers.62510	0	.	75279630	75280154	0	1	524	0
chr17	75281929	75282275	A549_Myers.62511	0	.	75281929	75282275	0	1	346	0
chr17	75283160	75283607	A549_Myers.62512	0	.	75283160	75283607	0	1	447	0
chr17	75283701	75284273	A549_Myers.62513	0	.	75283701	75284273	0	1	572	0
chr17	75287663	75288054	B_cells_Cheung.140952	0	.	75287663	75288054	0	1	391	0
chr17	75288014	75288738	A549_Myers.62516	0	.	75288014	75288738	0	1	724	0
chr17	75288120	75289389	B_cells_Cheung.140953	0	.	75288120	75289389	0	1	1269	0
chr17	75290881	75291362	B_cells_Cheung.140955	0	.	75290881	75291362	0	1	481	0
chr17	75293881	75294722	B_cells_Cheung.140958	0	.	75293881	75294722	0	1	841	0
chr17	75303756	75304061	A549_Myers.62519	0	.	75303756	75304061	0	1	305	0
chr17	75306344	75306893	B_cells_Cheung.140961	0	.	75306344	75306893	0	1	549	0
chr17	75309893	75310418	B_cells_Cheung.140963	0	.	75309893	75310418	0	1	525	0
chr17	75310792	75312084	B_cells_Cheung.140964	0	.	75310792	75312084	0	1	1292	0
chr17	75316105	75316740	B_Cells_Pritchard.2330875	0	.	75316105	75316740	0	1	635	0
chr17	75317037	75317976	HepG2_Caltech_ENCODE.27059	0	.	75317037	75317976	0	1	939	0
chr17	75317226	75317539	B_cells_Cheung.140970	0	.	75317226	75317539	0	1	313	0
chr17	75317499	75318252	B_Cells_Pritchard.2330879	0	.	75317499	75318252	0	1	753	0
chr17	75336094	75336975	A549_Myers.62531	0	.	75336094	75336975	0	1	881	0
chr17	75338830	75341097	HeLa_polyA+_Chen.26451	0	.	75338830	75341097	0	1	2267	0
chr17	75339054	75339992	BT20_Thompson.15828	0	.	75339054	75339992	0	1	938	0
chr17	75339258	75340101	H1_polyA+.84819	0	.	75339258	75340101	0	1	843	0
chr17	75340258	75340981	MDAMB468_Thompson.17540	0	.	75340258	75340981	0	1	723	0
chr17	75341662	75342240	HeLa_polyA+_Chen.26452	0	.	75341662	75342240	0	1	578	0
chr17	75341768	75342414	MDAMB468_Thompson.17541	0	.	75341768	75342414	0	1	646	0
chr17	75342569	75347704	BT20_Thompson.15833	0	-	75342569	75347704	0	2	3538,469	0,4666
chr17	75343099	75344975	BT474_Burge_Thompson.25009	0	.	75343099	75344975	0	1	1876	0
chr17	75343157	75347506	MDAMB468_Thompson.17543	0	-	75343157	75347506	0	2	2950,271	0,4078
chr17	75343173	75347645	ZR751_Thompson.17761	0	-	75343173	75347645	0	2	2934,410	0,4062
chr17	75343703	75344492	HepG2_Caltech_ENCODE.27067	0	.	75343703	75344492	0	1	789	0
chr17	75343838	75358823	HeLa_polyA+_Chen.26457	0	-	75343838	75358823	0	3	2269,186,531	0,3397,14454
chr17	75343873	75347410	H1_polyA+.84849	0	-	75343873	75347410	0	3	508,1462,175	0,772,3362
chr17	75343913	75344355	T47D_Burge_Thompson.21484	0	.	75343913	75344355	0	1	442	0
chr17	75344043	75344367	H9_polyA+.32592	0	.	75344043	75344367	0	1	324	0
chr17	75344617	75345515	REMC_LuminalBreast.73053	0	.	75344617	75345515	0	1	898	0
chr17	75345582	75346080	A549_Myers.62534	0	.	75345582	75346080	0	1	498	0
chr17	75350412	75351302	HeLa_polyA+_Chen.26462	0	.	75350412	75351302	0	1	890	0
chr17	75350419	75352646	H1_polyA+.84850	0	.	75350419	75352646	0	1	2227	0
chr17	75355359	75355905	H1_polyA+.84851	0	.	75355359	75355905	0	1	546	0
chr17	75357967	75358785	BT474_Burge_Thompson.25011	0	.	75357967	75358785	0	1	818	0
chr17	75378025	75379207	A549_Myers.62545	0	.	75378025	75379207	0	1	1182	0
chr17	75378134	75378886	pHIT000117813	0	+	75378134	75378886	0	2	203,271	0,481
chr17	75391355	75392554	B_cells_Cheung.140992	0	.	75391355	75392554	0	1	1199	0
chr17	75391506	75393019	B_Cells_Pritchard.2331227	0	-	75391506	75393019	0	1	1513	0
chr17	75391537	75392865	A549_Myers.62549	0	.	75391537	75392865	0	1	1328	0
chr17	75391779	75392528	K562.32584	0	.	75391779	75392528	0	1	749	0
chr17	75392585	75393388	pHIT000091358	0	-	75392585	75393388	0	2	340,62	0,741
chr17	75394873	75395474	A549_Myers.62550	0	.	75394873	75395474	0	1	601	0
chr17	75396915	75397850	A549_Myers.62552	0	.	75396915	75397850	0	1	935	0
chr17	75399474	75401521	A549_Myers.62553	0	.	75399474	75401521	0	1	2047	0
chr17	75402579	75403610	REMC_MyoepithelialBreast.67594	0	.	75402579	75403610	0	1	1031	0
chr17	75402625	75403473	HepG2_Caltech_ENCODE.27081	0	.	75402625	75403473	0	1	848	0
chr17	75402705	75403203	T47D_Burge_Thompson.21491	0	.	75402705	75403203	0	1	498	0
chr17	75402759	75405072	BT474_Burge_Thompson.25038	0	.	75402759	75405072	0	1	2313	0
chr17	75402761	75409111	MCF7_Burge_Thompson.23425	0	+	75402761	75409111	0	2	5301,899	0,5451
chr17	75402761	75409111	MCF7_Burge_Thompson.23426	0	.	75402761	75409111	0	1	6350	0
chr17	75403769	75404229	K562.32590	0	.	75403769	75404229	0	1	460	0
chr17	75403876	75404374	T47D_Burge_Thompson.21492	0	.	75403876	75404374	0	1	498	0
chr17	75403916	75404564	A549_Myers.62554	0	.	75403916	75404564	0	1	648	0
chr17	75404264	75406052	prostate_normal.42465	0	.	75404264	75406052	0	1	1788	0
chr17	75404388	75406709	HepG2_Caltech_ENCODE.27082	0	.	75404388	75406709	0	1	2321	0
chr17	75404409	75406755	REMC_LuminalBreast.73056	0	.	75404409	75406755	0	1	2346	0
chr17	75404415	75407428	K562.32589	0	.	75404415	75407428	0	1	3013	0
chr17	75404504	75409062	T47D_Burge_Thompson.21493	0	+	75404504	75409062	0	2	3558,898	0,3660
chr17	75404722	75408276	ZR751_Thompson.17770	0	.	75404722	75408276	0	1	3554	0
chr17	75405172	75407088	BT474_Burge_Thompson.25041	0	.	75405172	75407088	0	1	1916	0
chr17	75405519	75407454	REMC_MyoepithelialBreast.67595	0	.	75405519	75407454	0	1	1935	0
chr17	75405631	75407335	REMC_BreastStem.37146	0	.	75405631	75407335	0	1	1704	0
chr17	75405799	75406709	BT20_Thompson.15832	0	.	75405799	75406709	0	1	910	0
chr17	75406123	75409021	prostate_normal.42466	0	.	75406123	75409021	0	1	2898	0
chr17	75407528	75412342	K562.32591	0	.	75407528	75412342	0	1	4814	0
chr17	75407788	75410514	REMC_LuminalBreast.73057	0	.	75407788	75410514	0	1	2726	0
chr17	75408974	75410780	ZR751_Thompson.17771	0	.	75408974	75410780	0	1	1806	0
chr17	75409356	75410765	REMC_MyoepithelialBreast.67597	0	.	75409356	75410765	0	1	1409	0
chr17	75409643	75410429	T47D_Burge_Thompson.21494	0	.	75409643	75410429	0	1	786	0
chr17	75409662	75410780	MCF7_Burge_Thompson.23428	0	.	75409662	75410780	0	1	1118	0
chr17	75409828	75410667	A549_Myers.62556	0	.	75409828	75410667	0	1	839	0
chr17	75409844	75410576	B_Cells_Pritchard.2331141	0	-	75409844	75410576	0	1	732	0
chr17	75410283	75411693	HepG2_Caltech_ENCODE.27086	0	+	75410283	75411693	0	2	146,446	0,964
chr17	75410900	75411815	REMC_LuminalBreast.73058	0	.	75410900	75411815	0	1	915	0
chr17	75410941	75412346	REMC_BreastStem.37148	0	.	75410941	75412346	0	1	1405	0
chr17	75410949	75411647	REMC_MyoepithelialBreast.67598	0	.	75410949	75411647	0	1	698	0
chr17	75410996	75411631	BT474_Burge_Thompson.25040	0	.	75410996	75411631	0	1	635	0
chr17	75411008	75411655	melanoma_Garraway_short_term_cultures.49872	0	.	75411008	75411655	0	1	647	0
chr17	75411013	75411624	T47D_Burge_Thompson.21495	0	.	75411013	75411624	0	1	611	0
chr17	75411041	75411637	B_cells_Cheung.140996	0	.	75411041	75411637	0	1	596	0
chr17	75411084	75411524	MB435_Burge.31555	0	.	75411084	75411524	0	1	440	0
chr17	75411112	75411520	A549_Myers.62557	0	.	75411112	75411520	0	1	408	0
chr17	75411226	75411693	HepG2_Caltech_ENCODE.27087	0	.	75411226	75411693	0	1	467	0
chr17	75412556	75414214	REMC_LuminalBreast.73059	0	.	75412556	75414214	0	1	1658	0
chr17	75412583	75414811	REMC_MyoepithelialBreast.67600	0	.	75412583	75414811	0	1	2228	0
chr17	75412586	75414701	REMC_BreastStem.37149	0	.	75412586	75414701	0	1	2115	0
chr17	75412610	75413557	HepG2_Caltech_ENCODE.27088	0	.	75412610	75413557	0	1	947	0
chr17	75412640	75416208	K562.32592	0	.	75412640	75416208	0	1	3568	0
chr17	75412832	75413676	BT474_Burge_Thompson.25043	0	.	75412832	75413676	0	1	844	0
chr17	75413276	75415679	MCF7_Burge_Thompson.23430	0	.	75413276	75415679	0	1	2403	0
chr17	75414080	75416067	melanoma_Garraway_short_term_cultures.49873	0	.	75414080	75416067	0	1	1987	0
chr17	75414301	75416085	prostate_normal.42468	0	.	75414301	75416085	0	1	1784	0
chr17	75414384	75416148	T47D_Burge_Thompson.21496	0	.	75414384	75416148	0	1	1764	0
chr17	75414424	75415117	ZR751_Thompson.17773	0	.	75414424	75415117	0	1	693	0
chr17	75414475	75415038	BT474_Burge_Thompson.25044	0	.	75414475	75415038	0	1	563	0
chr17	75414478	75415063	B_cells_Cheung.141000	0	.	75414478	75415063	0	1	585	0
chr17	75414500	75415073	B_Cells_Pritchard.2331163	0	-	75414500	75415073	0	1	573	0
chr17	75414947	75416002	H1_polyA+.84821	0	.	75414947	75416002	0	1	1055	0
chr17	75415177	75416694	REMC_MyoepithelialBreast.67601	0	.	75415177	75416694	0	1	1517	0
chr17	75415224	75416065	ZR751_Thompson.17774	0	.	75415224	75416065	0	1	841	0
chr17	75415251	75416411	REMC_LuminalBreast.73060	0	.	75415251	75416411	0	1	1160	0
chr17	75415313	75415787	B_cells_Cheung.141001	0	.	75415313	75415787	0	1	474	0
chr17	75415402	75416002	BT474_Burge_Thompson.25045	0	.	75415402	75416002	0	1	600	0
chr17	75415422	75416036	MDAMB468_Thompson.17548	0	.	75415422	75416036	0	1	614	0
chr17	75415525	75416253	A549_Myers.62561	0	.	75415525	75416253	0	1	728	0
chr17	75417153	75419484	REMC_MyoepithelialBreast.67602	0	.	75417153	75419484	0	1	2331	0
chr17	75417982	75418638	K562.32594	0	.	75417982	75418638	0	1	656	0
chr17	75429794	75430977	B_Cells_Pritchard.2331265	0	.	75429794	75430977	0	1	1183	0
chr17	75430432	75433206	B_cells_Cheung.141004	0	.	75430432	75433206	0	1	2774	0
chr17	75432002	75434805	B_Cells_Pritchard.2331271	0	.	75432002	75434805	0	1	2803	0
chr17	75432340	75433159	A549_Myers.62566	0	.	75432340	75433159	0	1	819	0
chr17	75433238	75433658	A549_Myers.62567	0	.	75433238	75433658	0	1	420	0
chr17	75436039	75440575	B_Cells_Pritchard.2331275	0	-	75436039	75440575	0	3	2802,1162,311	0,3012,4225
chr17	75437176	75437702	A549_Myers.62568	0	.	75437176	75437702	0	1	526	0
chr17	75439075	75439593	A549_Myers.62570	0	.	75439075	75439593	0	1	518	0
chr17	75442477	75442866	A549_Myers.62572	0	.	75442477	75442866	0	1	389	0
chr17	75446283	75446729	A549_Myers.62574	0	.	75446283	75446729	0	1	446	0
chr17	75448486	75448853	A549_Myers.62575	0	.	75448486	75448853	0	1	367	0
chr17	75448830	75449188	BT474_Burge_Thompson.25046	0	.	75448830	75449188	0	1	358	0
chr17	75448852	75449158	B_Cells_Pritchard.2331309	0	.	75448852	75449158	0	1	306	0
chr17	75453065	75461741	MeI_Garraway.13081	0	+	75453065	75461741	0	4	1049,62,210,411	0,3684,7307,8265
chr17	75453065	75454124	MeI_Garraway.13080	0	.	75453065	75454124	0	1	1059	0
chr17	75454136	75454566	A549_Myers.62578	0	.	75454136	75454566	0	1	430	0
chr17	75465742	75466732	B_Cells_Pritchard.2331331	0	-	75465742	75466732	0	1	990	0
chr17	75465835	75466716	ZR751_Thompson.17766	0	.	75465835	75466716	0	1	881	0
chr17	75466073	75467131	MeI_Garraway.13076	0	.	75466073	75467131	0	1	1058	0
chr17	75466934	75467359	B_Cells_Pritchard.2331381	0	.	75466934	75467359	0	1	425	0
chr17	75498073	75500035	HIT000283546	0	+	75498073	75500035	0	1	1962	0
chr17	75503616	75515119	HIT000057569	0	-	75503616	75515119	0	6	191,3650,223,153,58,1025	0,964,6181,6727,9791,10478
chr17	75503785	75504095	A549_Myers.62587	0	.	75503785	75504095	0	1	310	0
chr17	75504577	75515119	Rinn_00025255	0	-	75504577	75515119	0	5	3653,224,154,59,1026	0,5219,5765,8829,9516
chr17	75504578	75515119	ENST00000507040	0	-	75504578	75515119	0	5	3652,223,153,58,1025	0,5219,5765,8829,9516
chr17	75504973	75505523	melanoma_Garraway_short_term_cultures.49878	0	.	75504973	75505523	0	1	550	0
chr17	75505011	75506576	prostate_carcinoma.72047	0	.	75505011	75506576	0	1	1565	0
chr17	75505291	75506576	prostate_carcinoma.72048	0	+	75505291	75506576	0	2	10,481	0,804
chr17	75505530	75508357	B_Cells_Pritchard.2331529	0	.	75505530	75508357	0	1	2827	0
chr17	75506276	75506953	B_cells_Cheung.141011	0	.	75506276	75506953	0	1	677	0
chr17	75506626	75507632	prostate_carcinoma.72049	0	.	75506626	75507632	0	1	1006	0
chr17	75506877	75508209	HepG2_Caltech_ENCODE.27090	0	.	75506877	75508209	0	1	1332	0
chr17	75507034	75508364	B_cells_Cheung.141013	0	.	75507034	75508364	0	1	1330	0
chr17	75507251	75509248	A549_Myers.62655	0	.	75507251	75509248	0	1	1997	0
chr17	75507749	75512388	Rinn_00025131	0	+	75507749	75512388	0	2	221,1305	0,3334
chr17	75507750	75512454	HIT000097986	0	+	75507750	75512454	0	2	220,1370	0,3334
chr17	75507750	75509208	MIP101.50104	0	.	75507750	75509208	0	1	1458	0
chr17	75507784	75508460	brain_AmbionMAQC.32261	0	.	75507784	75508460	0	1	676	0
chr17	75509186	75510080	brain_AmbionMAQC.32262	0	.	75509186	75510080	0	1	894	0
chr17	75510304	75512157	B_cells_Cheung.141018	0	.	75510304	75512157	0	1	1853	0
chr17	75510745	75517263	prostate_carcinoma.72154	0	+	75510745	75517263	0	2	823,131	0,6387
chr17	75511805	75512109	brain_AmbionMAQC.32264	0	.	75511805	75512109	0	1	304	0
chr17	75511807	75512118	B_Cells_Pritchard.2331541	0	.	75511807	75512118	0	1	311	0
chr17	75512258	75513880	B_cells_Cheung.141019	0	.	75512258	75513880	0	1	1622	0
chr17	75512297	75514557	prostate_carcinoma.72157	0	.	75512297	75514557	0	1	2260	0
chr17	75512304	75517148	B_Cells_Pritchard.2331543	0	.	75512304	75517148	0	1	4844	0
chr17	75512425	75513361	prostate_normal.42469	0	.	75512425	75513361	0	1	936	0
chr17	75513479	75517048	MCF7_Burge_Thompson.23450	0	.	75513479	75517048	0	1	3569	0
chr17	75513631	75515292	BT474_Burge_Thompson.25048	0	.	75513631	75515292	0	1	1661	0
chr17	75513930	75518326	B_cells_Cheung.141020	0	.	75513930	75518326	0	1	4396	0
chr17	75514447	75515945	brain_AmbionMAQC.32266	0	.	75514447	75515945	0	1	1498	0
chr17	75514817	75515271	A549_Myers.62659	0	.	75514817	75515271	0	1	454	0
chr17	75515593	75516408	REMC_MyoepithelialBreast.67629	0	.	75515593	75516408	0	1	815	0
chr17	75515641	75516552	A549_Myers.62660	0	.	75515641	75516552	0	1	911	0
chr17	75515652	75516063	HeLa_polyA+_Chen.26470	0	.	75515652	75516063	0	1	411	0
chr17	75516436	75516909	prostate_carcinoma.72160	0	.	75516436	75516909	0	1	473	0
chr17	75516493	75517708	REMC_LuminalBreast.73065	0	.	75516493	75517708	0	1	1215	0
chr17	75516506	75517461	HepG2_Caltech_ENCODE.27092	0	.	75516506	75517461	0	1	955	0
chr17	75516851	75517309	A549_Myers.62661	0	.	75516851	75517309	0	1	458	0
chr17	75517036	75517651	brain_AmbionMAQC.32268	0	.	75517036	75517651	0	1	615	0
chr17	75517709	75518258	A549_Myers.62662	0	.	75517709	75518258	0	1	549	0
chr17	75517771	75518332	B_Cells_Pritchard.2331547	0	.	75517771	75518332	0	1	561	0
chr17	75518472	75519421	B_Cells_Pritchard.2331549	0	.	75518472	75519421	0	1	949	0
chr17	75518492	75518874	A549_Myers.62663	0	.	75518492	75518874	0	1	382	0
chr17	75519857	75520423	prostate_carcinoma.72156	0	.	75519857	75520423	0	1	566	0
chr17	75520687	75522986	HIT000260511	0	-	75520687	75522986	0	1	2299	0
chr17	75520736	75522952	liver_polyA+.98137	0	.	75520736	75522952	0	1	2216	0
chr17	75520737	75523556	HIT000016790	0	-	75520737	75523556	0	1	2819	0
chr17	75520737	75522863	NEC_from_H9.54423	0	.	75520737	75522863	0	1	2126	0
chr17	75520751	75523065	CD4_Plagnol_activated.47258	0	.	75520751	75523065	0	1	2314	0
chr17	75520757	75522244	CD4_Plagnol_resting.46211	0	.	75520757	75522244	0	1	1487	0
chr17	75520994	75522431	breast_Burge.29879	0	.	75520994	75522431	0	1	1437	0
chr17	75521420	75521864	adipose_Burge.28803	0	.	75521420	75521864	0	1	444	0
chr17	75521480	75522241	B_cells_Cheung.141014	0	.	75521480	75522241	0	1	761	0
chr17	75521490	75521816	lymph_node_Burge.36817	0	.	75521490	75521816	0	1	326	0
chr17	75521491	75521859	colon_Burge.28054	0	.	75521491	75521859	0	1	368	0
chr17	75521590	75522039	H9_polyA-_Chen.10439	0	.	75521590	75522039	0	1	449	0
chr17	75521790	75522113	H1_rRNA-depleted_UCSD_REMC.63148	0	.	75521790	75522113	0	1	323	0
chr17	75521933	75522468	lymph_node_Burge.36818	0	.	75521933	75522468	0	1	535	0
chr17	75522129	75522922	H9_polyA-_Chen.10440	0	.	75522129	75522922	0	1	793	0
chr17	75522520	75523474	breast_Burge.29963	0	.	75522520	75523474	0	1	954	0
chr17	75522807	75523293	H1_rRNA-depleted_UCSD_REMC.63149	0	.	75522807	75523293	0	1	486	0
chr17	75522990	75523572	H9_polyA-_Chen.10438	0	.	75522990	75523572	0	1	582	0
chr17	75523029	75523654	liver_polyA+.98136	0	.	75523029	75523654	0	1	625	0
chr17	75523060	75523474	adipose_Burge.28808	0	.	75523060	75523474	0	1	414	0
chr17	75523663	75524060	IMR90_UCSD_REMC.36608	0	+	75523663	75524060	0	1	397	0
chr17	75712026	75714209	REMC_LuminalBreast.73122	0	.	75712026	75714209	0	1	2183	0
chr17	75712054	75713927	REMC_BreastStem.37172	0	.	75712054	75713927	0	1	1873	0
chr17	75712917	75713601	H1_polyA+.85064	0	.	75712917	75713601	0	1	684	0
chr17	75713091	75713631	BT20_Thompson.15842	0	.	75713091	75713631	0	1	540	0
chr17	75721379	75721717	A549_Myers.62672	0	.	75721379	75721717	0	1	338	0
chr17	75737206	75738132	MCF7_Burge_Thompson.23447	0	.	75737206	75738132	0	1	926	0
chr17	75737539	75738148	MDAMB468_Thompson.17574	0	.	75737539	75738148	0	1	609	0
chr17	75989396	75989760	B_cells_Cheung.141060	0	.	75989396	75989760	0	1	364	0
chr17	75989794	76001548	REMC_LuminalBreast.73289	0	.	75989794	76001548	0	1	11754	0
chr17	75989902	75991584	REMC_BreastStem.37313	0	.	75989902	75991584	0	1	1682	0
chr17	75989927	75992918	REMC_MyoepithelialBreast.67832	0	.	75989927	75992918	0	1	2991	0
chr17	75989987	75990372	B_cells_Cheung.141061	0	.	75989987	75990372	0	1	385	0
chr17	75992433	75993667	REMC_BreastStem.37315	0	.	75992433	75993667	0	1	1234	0
chr17	75993026	75996269	REMC_MyoepithelialBreast.67833	0	.	75993026	75996269	0	3	1092,320,232	0,2321,3011
chr17	75994179	75994803	B_Cells_Pritchard.2335327	0	+	75994179	75994803	0	1	624	0
chr17	75994426	75994847	prostate_normal.42646	0	.	75994426	75994847	0	1	421	0
chr17	76001046	76001530	REMC_MyoepithelialBreast.67836	0	.	76001046	76001530	0	1	484	0
chr17	76027998	76028480	A549_Myers.62713	0	.	76027998	76028480	0	1	482	0
chr17	76029557	76029959	A549_Myers.62714	0	.	76029557	76029959	0	1	402	0
chr17	76031586	76031957	prostate_carcinoma.72498	0	.	76031586	76031957	0	1	371	0
chr17	76032241	76032552	A549_Myers.62716	0	.	76032241	76032552	0	1	311	0
chr17	76033494	76033966	A549_Myers.62717	0	.	76033494	76033966	0	1	472	0
chr17	76033873	76034304	B_Cells_Pritchard.2332527	0	+	76033873	76034304	0	1	431	0
chr17	76034436	76034998	prostate_carcinoma.72499	0	.	76034436	76034998	0	1	562	0
chr17	76034463	76036519	REMC_LuminalBreast.73172	0	.	76034463	76036519	0	1	2056	0
chr17	76036649	76037247	B_Cells_Pritchard.2332537	0	+	76036649	76037247	0	1	598	0
chr17	76036713	76037782	MIP101.50154	0	.	76036713	76037782	0	1	1069	0
chr17	76036720	76037450	melanoma_Garraway_short_term_cultures.49986	0	.	76036720	76037450	0	1	730	0
chr17	76036734	76037098	BT474_Burge_Thompson.25099	0	.	76036734	76037098	0	1	364	0
chr17	76036778	76037645	REMC_LuminalBreast.73173	0	.	76036778	76037645	0	1	867	0
chr17	76036810	76037345	prostate_normal.42648	0	.	76036810	76037345	0	1	535	0
chr17	76036822	76037473	B_cells_Cheung.141090	0	.	76036822	76037473	0	1	651	0
chr17	76036834	76037352	MCF7_Burge_Thompson.23474	0	.	76036834	76037352	0	1	518	0
chr17	76036855	76037612	REMC_MyoepithelialBreast.67676	0	.	76036855	76037612	0	1	757	0
chr17	76037519	76037867	A549_Myers.62720	0	.	76037519	76037867	0	1	348	0
chr17	76037950	76038474	B_Cells_Pritchard.2332545	0	+	76037950	76038474	0	1	524	0
chr17	76038945	76039930	B_Cells_Pritchard.2332551	0	+	76038945	76039930	0	1	985	0
chr17	76039987	76043301	REMC_LuminalBreast.73174	0	.	76039987	76043301	0	1	3314	0
chr17	76040591	76043093	REMC_MyoepithelialBreast.67677	0	.	76040591	76043093	0	1	2502	0
chr17	76041175	76043305	prostate_carcinoma.72071	0	.	76041175	76043305	0	1	2130	0
chr17	76042979	76044035	B_cells_Cheung.141092	0	.	76042979	76044035	0	1	1056	0
chr17	76042980	76044005	A549_Myers.62724	0	.	76042980	76044005	0	1	1025	0
chr17	76043017	76043902	CD4_Plagnol_resting.46266	0	.	76043017	76043902	0	1	885	0
chr17	76043107	76044007	prostate_normal.42649	0	.	76043107	76044007	0	1	900	0
chr17	76043218	76044015	CD4_Plagnol_activated.47308	0	.	76043218	76044015	0	1	797	0
chr17	76043221	76044005	testes_Burge.39158	0	.	76043221	76044005	0	1	784	0
chr17	76043256	76043984	MCF7_Burge_Thompson.23476	0	.	76043256	76043984	0	1	728	0
chr17	76043444	76044011	prostate_carcinoma.72072	0	.	76043444	76044011	0	1	567	0
chr17	76044569	76045074	A549_Myers.62726	0	.	76044569	76045074	0	1	505	0
chr17	76051845	76053988	HIT000015686	0	-	76051845	76053988	0	1	2143	0
chr17	76052618	76053895	A549_Myers.63188	0	.	76052618	76053895	0	1	1277	0
chr17	76069682	76070808	A549_Myers.62762	0	.	76069682	76070808	0	1	1126	0
chr17	76070890	76071838	A549_Myers.62763	0	.	76070890	76071838	0	1	948	0
chr17	76075315	76075849	A549_Myers.62764	0	.	76075315	76075849	0	1	534	0
chr17	76086711	76087141	A549_Myers.62771	0	.	76086711	76087141	0	1	430	0
chr17	76088025	76088373	A549_Myers.62772	0	.	76088025	76088373	0	1	348	0
chr17	76088977	76089395	A549_Myers.62774	0	.	76088977	76089395	0	1	418	0
chr17	76098422	76098797	A549_Myers.62776	0	.	76098422	76098797	0	1	375	0
chr17	76099184	76100627	A549_Myers.62779	0	-	76099184	76100627	0	2	552,553	0,890
chr17	76099184	76099865	A549_Myers.62778	0	.	76099184	76099865	0	1	681	0
chr17	76099735	76100264	B_Cells_Pritchard.2332699	0	.	76099735	76100264	0	1	529	0
chr17	76103855	76104214	A549_Myers.62782	0	.	76103855	76104214	0	1	359	0
chr17	76111890	76112838	H1_polyA+.84865	0	.	76111890	76112838	0	1	948	0
chr17	76556301	76558590	REMC_LuminalBreast.73184	0	.	76556301	76558590	0	1	2289	0
chr17	76556400	76557222	HepG2_Caltech_ENCODE.27148	0	.	76556400	76557222	0	1	822	0
chr17	76556497	76561115	REMC_MyoepithelialBreast.67806	0	.	76556497	76561115	0	1	4618	0
chr17	76556614	76559473	HIT000021986	0	+	76556614	76559473	0	2	726,1365	0,1494
chr17	76556821	76558367	B_cells_Cheung.141268	0	.	76556821	76558367	0	1	1546	0
chr17	76556909	76557875	melanoma_Garraway_short_term_cultures.50017	0	.	76556909	76557875	0	1	966	0
chr17	76558053	76559404	melanoma_Garraway_short_term_cultures.50018	0	.	76558053	76559404	0	1	1351	0
chr17	76558421	76558934	B_cells_Cheung.141269	0	.	76558421	76558934	0	1	513	0
chr17	76558644	76561117	REMC_LuminalBreast.73185	0	.	76558644	76561117	0	1	2473	0
chr17	76567132	76568109	REMC_MyoepithelialBreast.67808	0	.	76567132	76568109	0	1	977	0
chr17	76568341	76568704	A549_Myers.62903	0	.	76568341	76568704	0	1	363	0
chr17	76570384	76570997	A549_Myers.62905	0	.	76570384	76570997	0	1	613	0
chr17	76570681	76571765	REMC_MyoepithelialBreast.67809	0	.	76570681	76571765	0	1	1084	0
chr17	76575395	76575714	A549_Myers.62906	0	.	76575395	76575714	0	1	319	0
chr17	76577326	76578104	A549_Myers.62908	0	.	76577326	76578104	0	1	778	0
chr17	76590426	76591675	HeLa_polyA+_Chen.26571	0	.	76590426	76591675	0	1	1249	0
chr17	76595076	76595761	K562.32641	0	.	76595076	76595761	0	1	685	0
chr17	76595088	76595749	brain_AmbionMAQC.32304	0	.	76595088	76595749	0	1	661	0
chr17	76595093	76595435	CD4_Plagnol_resting.46304	0	.	76595093	76595435	0	1	342	0
chr17	76595104	76595888	HeLa_polyA+_Chen.26575	0	.	76595104	76595888	0	1	784	0
chr17	76596279	76597281	B_Cells_Pritchard.2333991	0	+	76596279	76597281	0	1	1002	0
chr17	76596946	76602527	B_cells_Cheung.141274	0	.	76596946	76602527	0	1	5581	0
chr17	76597389	76604615	B_Cells_Pritchard.2333993	0	+	76597389	76604615	0	3	903,538,167	0,4617,7059
chr17	76597474	76598120	HeLa_polyA+_Chen.26576	0	.	76597474	76598120	0	1	646	0
chr17	76597477	76599059	HepG2_Caltech_ENCODE.27153	0	.	76597477	76599059	0	1	1582	0
chr17	76597510	76598922	CD4_Plagnol_activated.47416	0	.	76597510	76598922	0	1	1412	0
chr17	76597525	76598594	CD4_Plagnol_resting.46298	0	.	76597525	76598594	0	1	1069	0
chr17	76597579	76598347	melanoma_Garraway_short_term_cultures.50031	0	.	76597579	76598347	0	1	768	0
chr17	76597619	76598164	liver_polyA+.98323	0	.	76597619	76598164	0	1	545	0
chr17	76597697	76598901	REMC_LuminalBreast.73193	0	.	76597697	76598901	0	1	1204	0
chr17	76599182	76599742	HeLa_polyA+_Chen.26578	0	.	76599182	76599742	0	1	560	0
chr17	76599231	76600086	REMC_MyoepithelialBreast.67815	0	.	76599231	76600086	0	1	855	0
chr17	76599240	76600104	HepG2_Caltech_ENCODE.27154	0	.	76599240	76600104	0	1	864	0
chr17	76599248	76600103	melanoma_Garraway_short_term_cultures.50033	0	.	76599248	76600103	0	1	855	0
chr17	76599253	76600105	CD4_Plagnol_activated.47417	0	.	76599253	76600105	0	1	852	0
chr17	76599308	76599711	brain_AmbionMAQC.32305	0	.	76599308	76599711	0	1	403	0
chr17	76599315	76599804	K562.32643	0	.	76599315	76599804	0	1	489	0
chr17	76599802	76600105	CD4_Plagnol_resting.46309	0	.	76599802	76600105	0	1	303	0
chr17	76604041	76604876	CD4_Plagnol_activated.47421	0	.	76604041	76604876	0	1	835	0
chr17	76604762	76610343	B_cells_Cheung.141277	0	.	76604762	76610343	0	1	5581	0
chr17	76606285	76607344	CD4_Plagnol_resting.46313	0	.	76606285	76607344	0	1	1059	0
chr17	76606291	76607346	melanoma_Garraway_short_term_cultures.50037	0	.	76606291	76607346	0	1	1055	0
chr17	76608419	76609072	K562.32648	0	.	76608419	76609072	0	1	653	0
chr17	76608697	76610308	CD4_Plagnol_activated.47424	0	.	76608697	76610308	0	1	1611	0
chr17	76608762	76611118	B_Cells_Pritchard.2334009	0	+	76608762	76611118	0	2	1569,593	0,1763
chr17	76609209	76610974	K562.32649	0	.	76609209	76610974	0	1	1765	0
chr17	76609402	76610221	CD4_Plagnol_resting.46314	0	.	76609402	76610221	0	1	819	0
chr17	76609592	76610277	prostate_normal.42692	0	.	76609592	76610277	0	1	685	0
chr17	76611540	76612574	B_cells_Cheung.141279	0	.	76611540	76612574	0	1	1034	0
chr17	76611749	76612550	prostate_normal.42695	0	.	76611749	76612550	0	1	801	0
chr17	76611766	76612575	CD4_Plagnol_activated.47426	0	.	76611766	76612575	0	1	809	0
chr17	76612069	76612557	A549_Myers.62915	0	.	76612069	76612557	0	1	488	0
chr17	76613467	76613772	prostate_carcinoma.72208	0	.	76613467	76613772	0	1	305	0
chr17	76614258	76615831	CD4_Plagnol_activated.47427	0	.	76614258	76615831	0	1	1573	0
chr17	76614970	76615435	brain_AmbionMAQC.32307	0	.	76614970	76615435	0	1	465	0
chr17	76616202	76617112	A549_Myers.62918	0	.	76616202	76617112	0	2	313,255	0,655
chr17	76616649	76617054	B_cells_Cheung.141282	0	.	76616649	76617054	0	1	405	0
chr17	76616728	76617310	prostate_normal.42697	0	.	76616728	76617310	0	1	582	0
chr17	76755496	76757705	HepG2_Caltech_ENCODE.27167	0	.	76755496	76757705	0	1	2209	0
chr17	76755777	76757122	H1_polyA+.84919	0	.	76755777	76757122	0	1	1345	0
chr17	76757121	76757716	prostate_carcinoma.72141	0	.	76757121	76757716	0	1	595	0
chr17	76757913	76759198	HepG2_Caltech_ENCODE.27168	0	.	76757913	76759198	0	1	1285	0
chr17	76757996	76759298	brain_AmbionMAQC.32312	0	.	76757996	76759298	0	1	1302	0
chr17	76758002	76759881	H1_polyA+.84921	0	.	76758002	76759881	0	1	1879	0
chr17	76758158	76758628	prostate_carcinoma.72142	0	.	76758158	76758628	0	1	470	0
chr17	76758256	76758878	HeLa_polyA+_Chen.26594	0	.	76758256	76758878	0	1	622	0
chr17	76758280	76758681	A549_Myers.63008	0	.	76758280	76758681	0	1	401	0
chr17	76760179	76762744	H1_polyA+.84922	0	.	76760179	76762744	0	1	2565	0
chr17	76760181	76760909	prostate_carcinoma.72143	0	.	76760181	76760909	0	1	728	0
chr17	76760181	76761093	HepG2_Caltech_ENCODE.27169	0	.	76760181	76761093	0	1	912	0
chr17	76760187	76760824	B_Cells_Pritchard.2334459	0	.	76760187	76760824	0	1	637	0
chr17	76760202	76760849	MIP101.50231	0	.	76760202	76760849	0	1	647	0
chr17	76760245	76761419	brain_AmbionMAQC.32313	0	.	76760245	76761419	0	1	1174	0
chr17	76760330	76760672	A549_Myers.63010	0	.	76760330	76760672	0	1	342	0
chr17	76761069	76761827	B_Cells_Pritchard.2334461	0	.	76761069	76761827	0	1	758	0
chr17	76761158	76762737	prostate_carcinoma.72144	0	.	76761158	76762737	0	1	1579	0
chr17	76761174	76762038	MIP101.50311	0	.	76761174	76762038	0	1	864	0
chr17	76761202	76762058	HepG2_Caltech_ENCODE.27170	0	.	76761202	76762058	0	1	856	0
chr17	76761202	76761819	H9_polyA+.32680	0	.	76761202	76761819	0	1	617	0
chr17	76761652	76761955	A549_Myers.63011	0	.	76761652	76761955	0	1	303	0
chr17	76764790	76765599	HepG2_Caltech_ENCODE.27171	0	.	76764790	76765599	0	1	809	0
chr17	76764900	76765530	H1_polyA+.84925	0	.	76764900	76765530	0	1	630	0
chr17	76765005	76765472	brain_AmbionMAQC.32315	0	.	76765005	76765472	0	1	467	0
chr17	76765723	76770120	H1_polyA+.84923	0	.	76765723	76770120	0	1	4397	0
chr17	76766532	76767277	A549_Myers.63012	0	.	76766532	76767277	0	1	745	0
chr17	76766653	76767138	ZR751_Thompson.17823	0	.	76766653	76767138	0	1	485	0
chr17	76768662	76769174	HeLa_polyA+_Chen.26595	0	.	76768662	76769174	0	1	512	0
chr17	76768681	76769771	A549_Myers.63013	0	.	76768681	76769771	0	1	1090	0
chr17	76768718	76769663	H9_polyA+.32681	0	.	76768718	76769663	0	1	945	0
chr17	76769385	76772642	pHIT000030458	0	+	76769385	76772642	0	5	191,113,136,116,5	0,229,568,975,3252
chr17	76769621	76772642	pHIT000030455	0	+	76769621	76772642	0	4	106,136,116,5	0,332,739,3016
chr17	76769621	76770476	pHIT000030452	0	+	76769621	76770476	0	3	106,136,116	0,332,739
chr17	76769621	76771406	pHIT000030464	0	+	76769621	76771406	0	4	106,136,116,47	0,332,739,1738
chr17	76771488	76774353	H1_polyA+.84926	0	.	76771488	76774353	0	1	2865	0
chr17	76771705	76772660	A549_Myers.63015	0	.	76771705	76772660	0	1	955	0
chr17	76771763	76772904	brain_AmbionMAQC.32317	0	.	76771763	76772904	0	1	1141	0
chr17	76772307	76772749	MIP101.50315	0	.	76772307	76772749	0	1	442	0
chr17	76831089	76832304	brain_AmbionMAQC.32324	0	.	76831089	76832304	0	1	1215	0
chr17	76831800	76832179	BT474_Burge_Thompson.25172	0	.	76831800	76832179	0	1	379	0
chr17	76831806	76832234	REMC_LuminalBreast.73225	0	.	76831806	76832234	0	1	428	0
chr17	76831807	76832208	MCF7_Burge_Thompson.23533	0	.	76831807	76832208	0	1	401	0
chr17	76885342	76886206	B_cells_Cheung.141313	0	.	76885342	76886206	0	1	864	0
chr17	76888875	76889941	melanoma_Garraway_short_term_cultures.50070	0	.	76888875	76889941	0	1	1066	0
chr17	76920390	76921011	liver_polyA+.98385	0	.	76920390	76921011	0	1	621	0
chr17	76922325	76923709	A549_Myers.63073	0	.	76922325	76923709	0	1	1384	0
chr17	76924001	76924536	A549_Myers.63074	0	.	76924001	76924536	0	1	535	0
chr17	76925293	76925636	A549_Myers.63075	0	.	76925293	76925636	0	1	343	0
chr17	76925949	76926325	A549_Myers.63076	0	.	76925949	76926325	0	1	376	0
chr17	76926716	76928626	A549_Myers.63077	0	.	76926716	76928626	0	1	1910	0
chr17	76927570	76928414	MeWo_Garraway.26817	0	.	76927570	76928414	0	1	844	0
chr17	76927576	76934413	prostate_normal.42569	0	-	76927576	76934413	0	2	132,403	0,6434
chr17	76927588	76928284	HeLa_polyA+_Chen.26604	0	.	76927588	76928284	0	1	696	0
chr17	76927650	76934430	HepG2_Caltech_ENCODE.27188	0	-	76927650	76934430	0	2	375,496	0,6284
chr17	76927656	76928233	T47D_Burge_Thompson.21625	0	.	76927656	76928233	0	1	577	0
chr17	76927693	76928357	brain_AmbionMAQC.32329	0	.	76927693	76928357	0	1	664	0
chr17	76927737	76928422	MDAMB231_Thompson.16329	0	.	76927737	76928422	0	1	685	0
chr17	76928001	76934594	H1_polyA+.84987	0	-	76928001	76934594	0	2	24,660	0,5933
chr17	76928890	76931965	H1_polyA+.84988	0	.	76928890	76931965	0	1	3075	0
chr17	76928896	76933359	MCF7_Burge_Thompson.23528	0	.	76928896	76933359	0	1	4463	0
chr17	76928906	76932265	B_cells_Cheung.141316	0	.	76928906	76932265	0	1	3359	0
chr17	76928940	76929962	B_Cells_Pritchard.2334851	0	.	76928940	76929962	0	1	1022	0
chr17	76928945	76934398	MIP101.50289	0	.	76928945	76934398	0	1	5453	0
chr17	76929511	76930217	prostate_normal.42573	0	.	76929511	76930217	0	1	706	0
chr17	76929880	76972042	pHIT000117891	0	-	76929880	76972042	0	3	462,301,23	0,4130,42139
chr17	76929880	76938160	pHIT000117889	0	-	76929880	76938160	0	3	462,301,95	0,4130,8185
chr17	76929880	76970318	pHIT000030481	0	-	76929880	76970318	0	3	462,301,47	0,4130,40391
chr17	76930217	76930716	prostate_normal.42574	0	.	76930217	76930716	0	1	499	0
chr17	76930234	76930567	B_Cells_Pritchard.2334855	0	.	76930234	76930567	0	1	333	0
chr17	76930663	76931405	HepG2_Caltech_ENCODE.27189	0	.	76930663	76931405	0	1	742	0
chr17	76930680	76936397	B_Cells_Pritchard.2334857	0	.	76930680	76936397	0	1	5717	0
chr17	76930755	76931622	BT474_Burge_Thompson.25142	0	.	76930755	76931622	0	1	867	0
chr17	76930782	76932402	prostate_carcinoma.72253	0	.	76930782	76932402	0	1	1620	0
chr17	76930784	76931194	prostate_normal.42575	0	.	76930784	76931194	0	1	410	0
chr17	76930801	76931347	A549_Myers.63079	0	.	76930801	76931347	0	1	546	0
chr17	76930938	76932582	T47D_Burge_Thompson.21628	0	.	76930938	76932582	0	1	1644	0
chr17	76931241	76931903	MeWo_Garraway.26818	0	.	76931241	76931903	0	1	662	0
chr17	76931367	76931755	prostate_normal.42576	0	.	76931367	76931755	0	1	388	0
chr17	76931400	76932191	A549_Myers.63080	0	.	76931400	76932191	0	1	791	0
chr17	76931400	76933377	A549_Myers.63081	0	+	76931400	76933377	0	2	694,524	0,1453
chr17	76931400	76932203	brain_AmbionMAQC.32330	0	.	76931400	76932203	0	1	803	0
chr17	76931405	76933115	melanoma_Garraway_short_term_cultures.50076	0	.	76931405	76933115	0	1	1710	0
chr17	76931552	76931873	K562.32675	0	.	76931552	76931873	0	1	321	0
chr17	76932034	76933359	H1_polyA+.84989	0	.	76932034	76933359	0	1	1325	0
chr17	76932083	76933374	K562.32676	0	.	76932083	76933374	0	1	1291	0
chr17	76932401	76933393	B_cells_Cheung.141317	0	.	76932401	76933393	0	1	992	0
chr17	76932402	76932732	prostate_carcinoma.72255	0	.	76932402	76932732	0	1	330	0
chr17	76932439	76932826	A549_Myers.63082	0	.	76932439	76932826	0	1	387	0
chr17	76932441	76933351	prostate_normal.42578	0	.	76932441	76933351	0	1	910	0
chr17	76932696	76933353	T47D_Burge_Thompson.21629	0	.	76932696	76933353	0	1	657	0
chr17	76932878	76934430	HepG2_Caltech_ENCODE.27187	0	.	76932878	76934430	0	1	1552	0
chr17	76933460	76934550	BT474_Burge_Thompson.25143	0	.	76933460	76934550	0	1	1090	0
chr17	76933485	76935362	B_cells_Cheung.141318	0	.	76933485	76935362	0	1	1877	0
chr17	76933487	76934413	prostate_normal.42571	0	.	76933487	76934413	0	1	926	0
chr17	76933499	76934453	MCF7_Burge_Thompson.23529	0	.	76933499	76934453	0	1	954	0
chr17	76933527	76934460	T47D_Burge_Thompson.21630	0	.	76933527	76934460	0	1	933	0
chr17	76933538	76934354	brain_AmbionMAQC.32331	0	.	76933538	76934354	0	1	816	0
chr17	76933541	76934594	H1_polyA+.84986	0	.	76933541	76934594	0	1	1053	0
chr17	76933606	76935459	A549_Myers.63083	0	.	76933606	76935459	0	1	1853	0
chr17	76933631	76934381	HeLa_polyA+_Chen.26606	0	.	76933631	76934381	0	1	750	0
chr17	76933865	76934543	H9_polyA+.32689	0	.	76933865	76934543	0	1	678	0
chr17	76933924	76934598	MDAMB468_Thompson.17630	0	.	76933924	76934598	0	1	674	0
chr17	76933931	76934381	MDAMB231_Thompson.16330	0	.	76933931	76934381	0	1	450	0
chr17	76933942	76934460	MCF10A_Thompson.15779	0	.	76933942	76934460	0	1	518	0
chr17	76936690	76937206	B_Cells_Pritchard.2334859	0	.	76936690	76937206	0	1	516	0
chr17	76937308	76939152	B_Cells_Pritchard.2334861	0	.	76937308	76939152	0	1	1844	0
chr17	76937416	76938009	prostate_carcinoma.72256	0	.	76937416	76938009	0	1	593	0
chr17	76937666	76939072	B_cells_Cheung.141321	0	.	76937666	76939072	0	1	1406	0
chr17	76938335	76938970	prostate_carcinoma.72257	0	.	76938335	76938970	0	1	635	0
chr17	76951484	76969659	MB435_Burge.31743	0	+	76951484	76969659	0	2	66,623	0,17552
chr17	76951639	76952096	prostate_carcinoma.72259	0	.	76951639	76952096	0	1	457	0
chr17	76951641	76952078	melanoma_Garraway_short_term_cultures.50078	0	.	76951641	76952078	0	1	437	0
chr17	76951718	76952103	prostate_normal.42579	0	.	76951718	76952103	0	1	385	0
chr17	76952734	76953084	A549_Myers.63087	0	.	76952734	76953084	0	1	350	0
chr17	76953924	76955997	prostate_carcinoma.72262	0	.	76953924	76955997	0	1	2073	0
chr17	76955329	76972914	MIP101.50290	0	+	76955329	76972914	0	2	316,1250	0,16335
chr17	76956349	76982529	prostate_carcinoma.72265	0	-	76956349	76982529	0	3	46,121,9326	0,10542,16854
chr17	76956575	76957289	prostate_carcinoma.72268	0	.	76956575	76957289	0	1	714	0
chr17	76956608	76957872	melanoma_Garraway_short_term_cultures.50081	0	.	76956608	76957872	0	1	1264	0
chr17	76958708	76959209	melanoma_Garraway_short_term_cultures.50083	0	.	76958708	76959209	0	1	501	0
chr17	76959785	76961580	melanoma_Garraway_short_term_cultures.50084	0	.	76959785	76961580	0	1	1795	0
chr17	76959836	76962586	MeWo_Garraway.26822	0	+	76959836	76962586	0	2	210,457	0,2293
chr17	76960243	76961303	A549_Myers.63094	0	.	76960243	76961303	0	1	1060	0
chr17	76960363	76961593	brain_AmbionMAQC.32333	0	.	76960363	76961593	0	1	1230	0
chr17	76960610	76961112	MCF7_Burge_Thompson.23537	0	.	76960610	76961112	0	1	502	0
chr17	76960718	76961087	B_Cells_Pritchard.2334951	0	.	76960718	76961087	0	1	369	0
chr17	76961855	76962591	melanoma_Garraway_short_term_cultures.50085	0	.	76961855	76962591	0	1	736	0
chr17	76961868	76962581	prostate_carcinoma.72270	0	.	76961868	76962581	0	1	713	0
chr17	76962049	76962591	MIP101.50292	0	.	76962049	76962591	0	1	542	0
chr17	76963155	76973681	Rinn_00025778	0	-	76963155	76973681	0	6	1164,134,161,101,65,159	0,1279,4960,5723,7115,10367
chr17	76963212	76964977	melanoma_Garraway_short_term_cultures.50086	0	.	76963212	76964977	0	1	1765	0
chr17	76963455	76971012	Rinn_00026170	0	-	76963455	76971012	0	5	864,134,161,101,742	0,979,4660,5423,6815
chr17	76963455	76973845	Rinn_00026172	0	-	76963455	76973845	0	6	864,134,161,101,47,160	0,979,4660,5423,10067,10230
chr17	76963455	76973845	Rinn_00026171	0	-	76963455	76973845	0	6	864,134,161,101,47,152	0,979,4660,5423,10067,10238
chr17	76963585	76968363	Rinn_00025779	0	-	76963585	76968363	0	2	983,248	0,4530
chr17	76963763	76970021	Rinn_00026173	0	-	76963763	76970021	0	3	805,161,1143	0,4352,5115
chr17	76963989	76970937	melanoma_Garraway_short_term_cultures.50089	0	-	76963989	76970937	0	3	579,160,2058	0,4127,4890
chr17	76965632	76968231	HIT000026215	0	-	76965632	76968231	0	1	2599	0
chr17	76965795	76971012	melanoma_Garraway_short_term_cultures.50087	0	.	76965795	76971012	0	1	5217	0
chr17	76966736	76968361	MeWo_Garraway.26826	0	.	76966736	76968361	0	1	1625	0
chr17	76966935	76971639	prostate_normal.42589	0	-	76966935	76971639	0	2	77,453	0,4251
chr17	76967034	76967386	brain_AmbionMAQC.32337	0	.	76967034	76967386	0	1	352	0
chr17	76967165	76967498	MB435_Burge.31746	0	.	76967165	76967498	0	1	333	0
chr17	76967381	76968240	A549_Myers.63096	0	.	76967381	76968240	0	1	859	0
chr17	76967414	76968581	H1_polyA+.84990	0	.	76967414	76968581	0	1	1167	0
chr17	76967602	76968361	MCF7_Burge_Thompson.23541	0	.	76967602	76968361	0	1	759	0
chr17	76967882	76968345	prostate_normal.42590	0	.	76967882	76968345	0	1	463	0
chr17	76968251	76971018	MeWo_Garraway.26828	0	-	76968251	76971018	0	2	25,2011	0,756
chr17	76968627	76971018	MeWo_Garraway.26827	0	.	76968627	76971018	0	1	2391	0
chr17	76968630	76969659	MB435_Burge.31744	0	.	76968630	76969659	0	1	1029	0
chr17	76968985	76969323	A549_Myers.63100	0	.	76968985	76969323	0	1	338	0
chr17	76969034	76969737	prostate_normal.42591	0	.	76969034	76969737	0	1	703	0
chr17	76969212	76982192	pHIT000117902	0	+	76969212	76982192	0	2	75,558	0,12422
chr17	76969437	76970451	prostate_carcinoma.72275	0	.	76969437	76970451	0	1	1014	0
chr17	76969855	76970915	MCF7_Burge_Thompson.23543	0	.	76969855	76970915	0	1	1060	0
chr17	76970505	76970909	prostate_normal.42592	0	.	76970505	76970909	0	1	404	0
chr17	76970509	76970888	MB435_Burge.31739	0	.	76970509	76970888	0	1	379	0
chr17	76970980	76975341	prostate_normal.42585	0	-	76970980	76975341	0	2	49,1655	0,2706
chr17	76971153	76974231	brain_AmbionMAQC.32338	0	.	76971153	76974231	0	1	3078	0
chr17	76971201	76972958	MCF7_Burge_Thompson.23544	0	.	76971201	76972958	0	1	1757	0
chr17	76971202	76972958	melanoma_Garraway_short_term_cultures.50088	0	.	76971202	76972958	0	1	1756	0
chr17	76971212	76972963	MeWo_Garraway.26829	0	.	76971212	76972963	0	1	1751	0
chr17	76971220	76972943	prostate_carcinoma.72273	0	.	76971220	76972943	0	1	1723	0
chr17	76971224	76972936	MB435_Burge.31740	0	.	76971224	76972936	0	1	1712	0
chr17	76971494	76972914	MIP101.50291	0	.	76971494	76972914	0	1	1420	0
chr17	76971639	76972933	prostate_normal.42583	0	.	76971639	76972933	0	1	1294	0
chr17	76971682	76972076	A549_Myers.63101	0	.	76971682	76972076	0	1	394	0
chr17	76972290	76972892	A549_Myers.63102	0	.	76972290	76972892	0	1	602	0
chr17	76973211	76975341	prostate_normal.42584	0	.	76973211	76975341	0	1	2130	0
chr17	76973245	76974959	MIP101.50294	0	.	76973245	76974959	0	1	1714	0
chr17	76973761	76975420	MCF7_Burge_Thompson.23546	0	.	76973761	76975420	0	1	1659	0
chr17	76973852	76976399	A549_Myers.63103	0	.	76973852	76976399	0	1	2547	0
chr17	76975536	76982385	MCF7_Burge_Thompson.23547	0	.	76975536	76982385	0	1	6849	0
chr17	76975746	76982428	brain_AmbionMAQC.32334	0	-	76975746	76982428	0	2	1972,4144	0,2538
chr17	76975746	76982428	brain_AmbionMAQC.32335	0	.	76975746	76982428	0	1	6682	0
chr17	76976077	76982545	MIP101.50295	0	.	76976077	76982545	0	1	6468	0
chr17	76976414	76982442	melanoma_Garraway_short_term_cultures.50092	0	.	76976414	76982442	0	1	6028	0
chr17	76976465	76982451	H1_polyA+.84991	0	.	76976465	76982451	0	1	5986	0
chr17	76976474	76981923	K562.32684	0	.	76976474	76981923	0	1	5449	0
chr17	76976510	76982385	BT474_Burge_Thompson.25149	0	.	76976510	76982385	0	1	5875	0
chr17	76976522	76982451	prostate_normal.42588	0	.	76976522	76982451	0	1	5929	0
chr17	76976552	76977673	A549_Myers.63097	0	.	76976552	76977673	0	1	1121	0
chr17	76976572	76977765	liver_polyA+.98388	0	.	76976572	76977765	0	1	1193	0
chr17	76976572	76977832	NEC_from_H9.54619	0	.	76976572	76977832	0	1	1260	0
chr17	76976572	76982453	ZR751_Thompson.17853	0	.	76976572	76982453	0	1	5881	0
chr17	76976578	76981882	Rinn_00025781	0	-	76976578	76981882	0	2	1140,3599	0,1705
chr17	76976579	76977771	MCF10A_Thompson.15780	0	.	76976579	76977771	0	1	1192	0
chr17	76976579	76982347	T47D_Burge_Thompson.21634	0	.	76976579	76982347	0	1	5768	0
chr17	76976595	76977624	HeLa_polyA+_Chen.26607	0	.	76976595	76977624	0	1	1029	0
chr17	76976621	76977241	H9_polyA+.32690	0	.	76976621	76977241	0	1	620	0
chr17	76976764	76982349	BT20_Thompson.15889	0	.	76976764	76982349	0	1	5585	0
chr17	76976767	76977526	REMC_LuminalBreast.73236	0	.	76976767	76977526	0	1	759	0
chr17	76976774	76981908	HepG2_Caltech_ENCODE.27190	0	.	76976774	76981908	0	1	5134	0
chr17	76976814	76982192	pHIT000091749	0	+	76976814	76982192	0	2	47,574	0,4804
chr17	76976856	76977932	MeWo_Garraway.26832	0	.	76976856	76977932	0	1	1076	0
chr17	76976859	76978656	REMC_MyoepithelialBreast.67865	0	.	76976859	76978656	0	1	1797	0
chr17	76976859	76977686	B_Cells_Pritchard.2334995	0	.	76976859	76977686	0	1	827	0
chr17	76977050	76977439	MB435_Burge.31748	0	.	76977050	76977439	0	1	389	0
chr17	76977693	76982347	T47D_Burge_Thompson.21635	0	-	76977693	76982347	0	2	25,4063	0,591
chr17	76977818	76981671	B_Cells_Pritchard.2334997	0	.	76977818	76981671	0	1	3853	0
chr17	76977955	76981436	NEC_from_H9.54621	0	.	76977955	76981436	0	1	3481	0
chr17	76978073	76980580	MeWo_Garraway.26833	0	.	76978073	76980580	0	1	2507	0
chr17	76978127	76978629	B_cells_Cheung.141323	0	.	76978127	76978629	0	1	502	0
chr17	76978283	76980570	MCF10A_Thompson.15781	0	.	76978283	76980570	0	1	2287	0
chr17	76978543	76978869	MB435_Burge.31750	0	.	76978543	76978869	0	1	326	0
chr17	76978577	76978926	colon_Burge.28188	0	.	76978577	76978926	0	1	349	0
chr17	76978694	76979080	HME_Burge.30186	0	.	76978694	76979080	0	1	386	0
chr17	76978698	76982131	MDAMB468_Thompson.17632	0	.	76978698	76982131	0	1	3433	0
chr17	76978987	76979434	kidney_Gilad.63578	0	.	76978987	76979434	0	1	447	0
chr17	76979121	76980553	B_cells_Cheung.141324	0	.	76979121	76980553	0	1	1432	0
chr17	76979446	76981659	HeLa_polyA+_Chen.26609	0	.	76979446	76981659	0	1	2213	0
chr17	76979490	76981685	REMC_LuminalBreast.73238	0	.	76979490	76981685	0	1	2195	0
chr17	76979571	76980649	REMC_MyoepithelialBreast.67866	0	.	76979571	76980649	0	1	1078	0
chr17	76979629	76981959	A549_Myers.63099	0	.	76979629	76981959	0	1	2330	0
chr17	76980620	76982033	liver_polyA+.98390	0	.	76980620	76982033	0	1	1413	0
chr17	76980682	76981054	HeLa_polyA-_Chen.14377	0	.	76980682	76981054	0	1	372	0
chr17	76980688	76981691	MeWo_Garraway.26834	0	.	76980688	76981691	0	1	1003	0
chr17	76980706	76981093	MB435_Burge.31756	0	.	76980706	76981093	0	1	387	0
chr17	76980737	76982307	MCF10A_Thompson.15782	0	.	76980737	76982307	0	1	1570	0
chr17	76981157	76981973	B_cells_Cheung.141325	0	.	76981157	76981973	0	1	816	0
chr17	76981361	76982338	H9_polyA+.32693	0	.	76981361	76982338	0	1	977	0
chr17	76981827	76982366	B_Cells_Pritchard.2334999	0	.	76981827	76982366	0	1	539	0
chr17	77049120	77049643	MIP101.50301	0	.	77049120	77049643	0	1	523	0
chr17	77050719	77051163	A549_Myers.63141	0	.	77050719	77051163	0	1	444	0
chr17	77051240	77052740	REMC_LuminalBreast.73411	0	.	77051240	77052740	0	1	1500	0
chr17	77052996	77055882	REMC_LuminalBreast.73412	0	.	77052996	77055882	0	1	2886	0
chr17	77053426	77054025	A549_Myers.63143	0	.	77053426	77054025	0	1	599	0
chr17	77054612	77055383	A549_Myers.63144	0	.	77054612	77055383	0	1	771	0
chr17	77055433	77055911	A549_Myers.63145	0	.	77055433	77055911	0	1	478	0
chr17	77056001	77058771	REMC_LuminalBreast.73413	0	.	77056001	77058771	0	1	2770	0
chr17	77060581	77069626	B_Cells_Pritchard.2335247	0	+	77060581	77069626	0	2	46,677	0,8368
chr17	77060886	77062892	REMC_LuminalBreast.73414	0	.	77060886	77062892	0	1	2006	0
chr17	77062158	77063064	brain_AmbionMAQC.32360	0	.	77062158	77063064	0	1	906	0
chr17	77062590	77063181	A549_Myers.63148	0	.	77062590	77063181	0	1	591	0
chr17	77063214	77064407	REMC_LuminalBreast.73415	0	.	77063214	77064407	0	1	1193	0
chr17	77063433	77064401	H1_polyA+.85003	0	.	77063433	77064401	0	1	968	0
chr17	77065019	77066827	A549_Myers.63150	0	.	77065019	77066827	0	1	1808	0
chr17	77065119	77065968	REMC_LuminalBreast.73416	0	.	77065119	77065968	0	1	849	0
chr17	77065138	77065952	H9_polyA+.32700	0	.	77065138	77065952	0	1	814	0
chr17	77065474	77065969	H1_polyA+.85004	0	.	77065474	77065969	0	1	495	0
chr17	77066306	77069377	REMC_LuminalBreast.73417	0	.	77066306	77069377	0	1	3071	0
chr17	77066452	77066879	K562.32686	0	.	77066452	77066879	0	1	427	0
chr17	77069103	77069939	A549_Myers.63151	0	.	77069103	77069939	0	1	836	0
chr17	77069134	77069620	B_cells_Cheung.141330	0	.	77069134	77069620	0	1	486	0
chr17	77069726	77074365	B_Cells_Pritchard.2335249	0	.	77069726	77074365	0	1	4639	0
chr17	77070023	77070726	A549_Myers.63152	0	.	77070023	77070726	0	1	703	0
chr17	77070143	77071102	B_cells_Cheung.141331	0	.	77070143	77071102	0	1	959	0
chr17	77070149	77071672	prostate_carcinoma.72306	0	.	77070149	77071672	0	1	1523	0
chr17	77070374	77071940	K562.32688	0	.	77070374	77071940	0	1	1566	0
chr17	77070765	77073171	REMC_LuminalBreast.73418	0	.	77070765	77073171	0	1	2406	0
chr17	77070975	77071657	melanoma_Garraway_short_term_cultures.50113	0	.	77070975	77071657	0	1	682	0
chr17	77071204	77072156	B_cells_Cheung.141332	0	.	77071204	77072156	0	1	952	0
chr17	77071211	77071850	brain_AmbionMAQC.32362	0	.	77071211	77071850	0	1	639	0
chr17	77071263	77072163	H1_polyA+.85005	0	.	77071263	77072163	0	1	900	0
chr17	77072246	77073213	melanoma_Garraway_short_term_cultures.50114	0	.	77072246	77073213	0	1	967	0
chr17	77072295	77072678	A549_Myers.63750	0	.	77072295	77072678	0	1	383	0
chr17	77073523	77075689	REMC_LuminalBreast.73419	0	.	77073523	77075689	0	1	2166	0
chr17	77074587	77075014	B_Cells_Pritchard.2335251	0	.	77074587	77075014	0	1	427	0
chr17	77074633	77075574	REMC_MyoepithelialBreast.67901	0	.	77074633	77075574	0	1	941	0
chr17	77074740	77075633	H1_polyA+.85007	0	.	77074740	77075633	0	1	893	0
chr17	77075946	77078982	REMC_LuminalBreast.73420	0	.	77075946	77078982	0	1	3036	0
chr17	77076162	77076737	B_Cells_Pritchard.2335257	0	.	77076162	77076737	0	1	575	0
chr17	77079176	77080499	REMC_LuminalBreast.73421	0	.	77079176	77080499	0	1	1323	0
chr17	77079768	77080826	REMC_MyoepithelialBreast.67904	0	.	77079768	77080826	0	1	1058	0
chr17	77080537	77081014	B_Cells_Pritchard.2344599	0	-	77080537	77081014	0	1	477	0
chr17	77080898	77084960	REMC_LuminalBreast.73422	0	.	77080898	77084960	0	1	4062	0
chr17	77081012	77084970	REMC_MyoepithelialBreast.67905	0	.	77081012	77084970	0	1	3958	0
chr17	77081438	77082072	REMC_BreastStem.37279	0	.	77081438	77082072	0	1	634	0
chr17	77083381	77084311	REMC_BreastStem.37280	0	.	77083381	77084311	0	1	930	0
chr17	77083968	77084898	melanoma_Garraway_short_term_cultures.50115	0	.	77083968	77084898	0	1	930	0
chr17	77084051	77084910	B_Cells_Pritchard.2344615	0	+	77084051	77084910	0	1	859	0
chr17	77084441	77084911	REMC_BreastStem.37281	0	.	77084441	77084911	0	1	470	0
chr17	77085107	77087563	REMC_MyoepithelialBreast.67906	0	.	77085107	77087563	0	1	2456	0
chr17	77088203	77089005	REMC_MyoepithelialBreast.67908	0	.	77088203	77089005	0	1	802	0
chr17	77095667	77108864	ENST00000430912	0	+	77095667	77108864	0	2	174,187	0,13010
chr17	77095706	77096328	HeLa_polyA+_Chen.26622	0	.	77095706	77096328	0	1	622	0
chr17	77096400	77098235	REMC_BreastStem.37350	0	.	77096400	77098235	0	1	1835	0
chr17	77096681	77097505	MeWo_Garraway.26856	0	.	77096681	77097505	0	1	824	0
chr17	77096688	77100999	REMC_LuminalBreast.73971	0	.	77096688	77100999	0	1	4311	0
chr17	77096725	77097950	MCF10A_Thompson.15798	0	.	77096725	77097950	0	1	1225	0
chr17	77096886	77099369	REMC_MyoepithelialBreast.67913	0	.	77096886	77099369	0	1	2483	0
chr17	77096888	77097544	melanoma_Garraway_short_term_cultures.50121	0	.	77096888	77097544	0	1	656	0
chr17	77096934	77097576	HeLa_polyA+_Chen.26623	0	.	77096934	77097576	0	1	642	0
chr17	77096966	77108700	Rinn_00025524	0	+	77096966	77108700	0	2	900,24	0,11710
chr17	77097724	77098242	MeWo_Garraway.26857	0	.	77097724	77098242	0	1	518	0
chr17	77097941	77098334	HeLa_polyA-_Chen.14380	0	.	77097941	77098334	0	1	393	0
chr17	77101113	77105192	REMC_LuminalBreast.73972	0	.	77101113	77105192	0	1	4079	0
chr17	77101759	77102791	REMC_MyoepithelialBreast.67914	0	.	77101759	77102791	0	1	1032	0
chr17	77102929	77106912	B_cells_Cheung.141338	0	.	77102929	77106912	0	1	3983	0
chr17	77102934	77106911	B_Cells_Pritchard.2344665	0	-	77102934	77106911	0	1	3977	0
chr17	77103798	77106778	REMC_MyoepithelialBreast.67916	0	.	77103798	77106778	0	1	2980	0
chr17	77103901	77105154	REMC_BreastStem.37301	0	.	77103901	77105154	0	1	1253	0
chr17	77105272	77105702	HeLa_polyA+_Chen.26628	0	.	77105272	77105702	0	1	430	0
chr17	77105797	77106712	BT20_Thompson.16013	0	.	77105797	77106712	0	1	915	0
chr17	77115914	77116314	K562.32703	0	.	77115914	77116314	0	1	400	0
chr17	77132786	77133322	HeLa_polyA+_Chen.26632	0	.	77132786	77133322	0	1	536	0
chr17	77217534	77217912	prostate_carcinoma.75942	0	.	77217534	77217912	0	1	378	0
chr17	77217535	77217894	MIP101.50386	0	.	77217535	77217894	0	1	359	0
chr17	77299470	77300145	prostate_normal.42756	0	.	77299470	77300145	0	1	675	0
chr17	77299661	77300618	BT474_Burge_Thompson.25203	0	.	77299661	77300618	0	1	957	0
chr17	77299934	77300571	MDAMB468_Thompson.17667	0	.	77299934	77300571	0	1	637	0
chr17	77303402	77303723	HeLa_polyA+_Chen.26650	0	.	77303402	77303723	0	1	321	0
chr17	77303406	77303841	HepG2_Caltech_ENCODE.28945	0	.	77303406	77303841	0	1	435	0
chr17	77303997	77304464	B_cells_Cheung.141430	0	.	77303997	77304464	0	1	467	0
chr17	77304425	77306208	REMC_LuminalBreast.73266	0	.	77304425	77306208	0	1	1783	0
chr17	77304874	77305260	prostate_normal.42757	0	.	77304874	77305260	0	1	386	0
chr17	77307203	77311416	ZR751_Thompson.17890	0	.	77307203	77311416	0	1	4213	0
chr17	77308333	77308895	T47D_Burge_Thompson.21666	0	.	77308333	77308895	0	1	562	0
chr17	77309271	77310199	BT474_Burge_Thompson.25205	0	.	77309271	77310199	0	1	928	0
chr17	77309450	77310936	REMC_LuminalBreast.73268	0	.	77309450	77310936	0	1	1486	0
chr17	77310346	77310748	A549_Myers.63180	0	.	77310346	77310748	0	1	402	0
chr17	77310629	77311192	MDAMB468_Thompson.17669	0	.	77310629	77311192	0	1	563	0
chr17	77310998	77312529	MCF7_Burge_Thompson.23596	0	.	77310998	77312529	0	1	1531	0
chr17	77311099	77312122	A549_Myers.63181	0	.	77311099	77312122	0	1	1023	0
chr17	77311525	77313798	ZR751_Thompson.17892	0	.	77311525	77313798	0	1	2273	0
chr17	77311710	77312702	T47D_Burge_Thompson.21651	0	.	77311710	77312702	0	1	992	0
chr17	77312695	77313959	A549_Myers.63183	0	.	77312695	77313959	0	1	1264	0
chr17	77379189	77381550	H9_polyA+.32728	0	.	77379189	77381550	0	1	2361	0
chr17	77379192	77381533	HepG2_Caltech_ENCODE.27214	0	.	77379192	77381533	0	1	2341	0
chr17	77379202	77381554	T47D_Burge_Thompson.21652	0	.	77379202	77381554	0	1	2352	0
chr17	77379202	77381557	B_cells_Cheung.141431	0	.	77379202	77381557	0	1	2355	0
chr17	77379202	77381548	MDAMB468_Thompson.17670	0	.	77379202	77381548	0	1	2346	0
chr17	77379204	77381560	BT474_Burge_Thompson.25180	0	.	77379204	77381560	0	1	2356	0
chr17	77379208	77381679	brain_AmbionMAQC.32401	0	.	77379208	77381679	0	1	2471	0
chr17	77379209	77381541	CD4_Plagnol_resting.46442	0	.	77379209	77381541	0	1	2332	0
chr17	77379210	77381546	melanoma_Garraway_short_term_cultures.50178	0	.	77379210	77381546	0	1	2336	0
chr17	77379219	77381552	CD4_Plagnol_activated.47557	0	.	77379219	77381552	0	1	2333	0
chr17	77379220	77380838	MCF10A_Thompson.15815	0	.	77379220	77380838	0	1	1618	0
chr17	77379232	77379550	A549_Myers.63184	0	.	77379232	77379550	0	1	318	0
chr17	77379253	77381539	ZR751_Thompson.17886	0	.	77379253	77381539	0	1	2286	0
chr17	77379431	77381525	MCF7_Burge_Thompson.23574	0	.	77379431	77381525	0	1	2094	0
chr17	77379457	77380350	BT20_Thompson.15911	0	.	77379457	77380350	0	1	893	0
chr17	77379598	77380331	REMC_BreastStem.37320	0	.	77379598	77380331	0	1	733	0
chr17	77380348	77381932	liver_polyA+.103337	0	+	77380348	77381932	0	2	1079,184	0,1400
chr17	77380513	77380821	H1_rRNA-depleted_UCSD_REMC.63426	0	.	77380513	77380821	0	1	308	0
chr17	77380575	77381491	K562.32729	0	.	77380575	77381491	0	1	916	0
chr17	77380707	77381539	BT20_Thompson.15912	0	.	77380707	77381539	0	1	832	0
chr17	77380772	77381149	HME_Burge.30238	0	.	77380772	77381149	0	1	377	0
chr17	77380788	77381126	NEC_from_H9.54703	0	.	77380788	77381126	0	1	338	0
chr17	77380896	77381537	MCF10A_Thompson.15816	0	.	77380896	77381537	0	1	641	0
chr17	77380925	77381349	H1_rRNA-depleted_UCSD_REMC.63425	0	.	77380925	77381349	0	1	424	0
chr17	77380927	77381366	IMR90_UCSD_REMC.36802	0	+	77380927	77381366	0	1	439	0
chr17	77382397	77383234	MIP101.50565	0	.	77382397	77383234	0	1	837	0
chr17	77382419	77383521	melanoma_Garraway_short_term_cultures.50179	0	.	77382419	77383521	0	1	1102	0
chr17	77382545	77383340	CD4_Plagnol_resting.46443	0	.	77382545	77383340	0	1	795	0
chr17	77382683	77383105	HeLa_polyA+_Chen.26652	0	.	77382683	77383105	0	1	422	0
chr17	77383551	77383869	IMR90_UCSD_REMC.36803	0	+	77383551	77383869	0	1	318	0
chr17	77388593	77389754	REMC_BreastStem.37325	0	.	77388593	77389754	0	1	1161	0
chr17	77388757	77390374	B_cells_Cheung.141438	0	.	77388757	77390374	0	1	1617	0
chr17	77388799	77389674	REMC_MyoepithelialBreast.67894	0	.	77388799	77389674	0	1	875	0
chr17	77390751	77393250	pHIT000030529	0	-	77390751	77393250	0	3	8,296,136	0,1713,2363
chr17	77391157	77392501	REMC_MyoepithelialBreast.67896	0	.	77391157	77392501	0	1	1344	0
chr17	77391631	77392841	B_cells_Cheung.141441	0	.	77391631	77392841	0	1	1210	0
chr17	77391765	77393079	MDAMB231_Thompson.16369	0	.	77391765	77393079	0	1	1314	0
chr17	77392894	77393296	B_cells_Cheung.141442	0	.	77392894	77393296	0	1	402	0
chr17	77412251	77414348	MCF7_Burge_Thompson.23616	0	+	77412251	77414348	0	2	345,21	0,2076
chr17	77413917	77415909	H1_polyA+.86323	0	.	77413917	77415909	0	1	1992	0
chr17	77414089	77418345	pHIT000030547	0	+	77414089	77418345	0	3	162,71,271	0,3389,3985
chr17	77414788	77415727	melanoma_Garraway_short_term_cultures.50194	0	.	77414788	77415727	0	1	939	0
chr17	77415112	77415785	H9_polyA-_Chen.10500	0	.	77415112	77415785	0	1	673	0
chr17	77415389	77415893	CD4_Snyder.54459	0	.	77415389	77415893	0	1	504	0
chr17	77415401	77416347	REMC_BreastStem.37346	0	.	77415401	77416347	0	1	946	0
chr17	77416823	77417578	liver_polyA+.103407	0	.	77416823	77417578	0	1	755	0
chr17	77425467	77426802	REMC_MyoepithelialBreast.67937	0	.	77425467	77426802	0	1	1335	0
chr17	77428691	77432761	REMC_MyoepithelialBreast.67938	0	.	77428691	77432761	0	1	4070	0
chr17	77428697	77432786	B_cells_Cheung.141548	0	.	77428697	77432786	0	1	4089	0
chr17	77429480	77432753	REMC_BreastStem.37384	0	.	77429480	77432753	0	1	3273	0
chr17	77429507	77432756	melanoma_Garraway_short_term_cultures.50198	0	.	77429507	77432756	0	1	3249	0
chr17	77429598	77432759	K562.32753	0	+	77429598	77432759	0	2	1507,671	0,2490
chr17	77429748	77430900	HeLa_polyA+_Chen.26660	0	.	77429748	77430900	0	1	1152	0
chr17	77431984	77432766	CD4_Plagnol_activated.47613	0	.	77431984	77432766	0	1	782	0
chr17	77432029	77432730	HeLa_polyA+_Chen.26663	0	.	77432029	77432730	0	1	701	0
chr17	77432089	77432742	ZR751_Thompson.18359	0	.	77432089	77432742	0	1	653	0
chr17	77432116	77432731	BT474_Burge_Thompson.25233	0	.	77432116	77432731	0	1	615	0
chr17	77432161	77432752	BT20_Thompson.15921	0	.	77432161	77432752	0	1	591	0
chr17	77432236	77432674	MDAMB231_Thompson.16371	0	.	77432236	77432674	0	1	438	0
chr17	77434367	77434753	H1_rRNA-depleted_UCSD_REMC.63451	0	.	77434367	77434753	0	1	386	0
chr17	77434375	77434752	brain_AmbionMAQC.32462	0	.	77434375	77434752	0	1	377	0
chr17	77435243	77437984	melanoma_Garraway_short_term_cultures.50201	0	.	77435243	77437984	0	1	2741	0
chr17	77435247	77436683	BT20_Thompson.15922	0	.	77435247	77436683	0	1	1436	0
chr17	77435252	77436080	MDAMB231_Thompson.16372	0	.	77435252	77436080	0	1	828	0
chr17	77435717	77436302	H1_rRNA-depleted_UCSD_REMC.63453	0	.	77435717	77436302	0	1	585	0
chr17	77435888	77437906	MeWo_Garraway.26934	0	.	77435888	77437906	0	1	2018	0
chr17	77436150	77437395	IMR90_UCSD_REMC.36826	0	+	77436150	77437395	0	1	1245	0
chr17	77436201	77436833	MDAMB468_Thompson.17676	0	.	77436201	77436833	0	1	632	0
chr17	77436244	77436804	H9_polyA-_Chen.10510	0	.	77436244	77436804	0	1	560	0
chr17	77436370	77437343	H1_rRNA-depleted_UCSD_REMC.63457	0	.	77436370	77437343	0	1	973	0
chr17	77436528	77437245	liver_polyA+.103430	0	.	77436528	77437245	0	1	717	0
chr17	77436615	77437348	A549_Myers.65143	0	.	77436615	77437348	0	1	733	0
chr17	77436709	77437282	NEC_from_H9.54720	0	.	77436709	77437282	0	1	573	0
chr17	77436996	77437379	MB435_Burge.32167	0	.	77436996	77437379	0	1	383	0
chr17	77437424	77437898	A549_Myers.65144	0	.	77437424	77437898	0	1	474	0
chr17	77478937	77481883	H9_polyA+.32753	0	+	77478937	77481883	0	2	675,1241	0,1705
chr17	77478978	77482742	REMC_MyoepithelialBreast.67945	0	+	77478978	77482742	0	2	634,2100	0,1664
chr17	77478994	77481919	Rinn_00025107	0	+	77478994	77481919	0	2	618,1278	0,1647
chr17	77478995	77481919	ENST00000500627	0	+	77478995	77481919	0	2	617,1277	0,1647
chr17	77478995	77480840	HIT000391143	0	+	77478995	77480840	0	2	617,198	0,1647
chr17	77478995	77481920	NR_015454	0	+	77478995	77481920	0	2	617,1278	0,1647
chr17	77478997	77481665	MeI_Garraway.13163	0	+	77478997	77481665	0	2	615,1358	0,1310
chr17	77479048	77481109	testes_Burge.39993	0	+	77479048	77481109	0	2	564,467	0,1594
chr17	77479108	77482023	HIT000098356	0	+	77479108	77482023	0	2	504,1381	0,1534
chr17	77479109	77481685	HIT000091037	0	+	77479109	77481685	0	2	503,1043	0,1533
chr17	77479118	77481682	HIT000261125	0	+	77479118	77481682	0	2	494,1040	0,1524
chr17	77479132	77481919	Rinn_00025525	0	+	77479132	77481919	0	2	480,1276	0,1511
chr17	77479310	77481666	HIT000286717	0	+	77479310	77481666	0	2	302,1024	0,1332
chr17	77479345	77481937	K562.32759	0	+	77479345	77481937	0	2	267,1295	0,1297
chr17	77479572	77481847	HIT000087233	0	+	77479572	77481847	0	2	40,1205	0,1070
chr17	77479585	77481669	MDAMB468_Thompson.17718	0	+	77479585	77481669	0	2	27,1027	0,1057
chr17	77480218	77481902	prostate_normal.44400	0	.	77480218	77481902	0	1	1684	0
chr17	77480294	77482489	MCF10A_Thompson.15829	0	.	77480294	77482489	0	1	2195	0
chr17	77480295	77481937	K562.32760	0	.	77480295	77481937	0	1	1642	0
chr17	77480308	77481916	MDAMB231_Thompson.16386	0	.	77480308	77481916	0	1	1608	0
chr17	77480336	77481914	MDAMB468_Thompson.17719	0	.	77480336	77481914	0	1	1578	0
chr17	77480392	77481883	H9_polyA+.32754	0	.	77480392	77481883	0	1	1491	0
chr17	77480441	77482441	melanoma_Garraway_short_term_cultures.50212	0	.	77480441	77482441	0	1	2000	0
chr17	77480640	77481138	brain_AmbionMAQC.32422	0	.	77480640	77481138	0	1	498	0
chr17	77480642	77480973	HeLa_Bartel_miR-155_12hr.24647	0	.	77480642	77480973	0	1	331	0
chr17	77480909	77481507	HeLa_polyA+_Chen.26677	0	.	77480909	77481507	0	1	598	0
chr17	77481093	77481914	CD4_Plagnol_resting.46476	0	.	77481093	77481914	0	1	821	0
chr17	77481186	77481673	MCF7_Burge_Thompson.23638	0	.	77481186	77481673	0	1	487	0
chr17	77481197	77481758	CD4_Plagnol_activated.47622	0	.	77481197	77481758	0	1	561	0
chr17	77481216	77482125	MB435_Burge.31852	0	+	77481216	77482125	0	2	481,247	0,662
chr17	77481309	77481796	HeLa_Bartel_miR-155_12hr.24648	0	.	77481309	77481796	0	1	487	0
chr17	77499785	77500217	liver_polyA+.98500	0	.	77499785	77500217	0	1	432	0
chr17	77499839	77500554	brain_AmbionMAQC.32432	0	.	77499839	77500554	0	1	715	0
chr17	77501643	77502263	B_cells_Cheung.141470	0	.	77501643	77502263	0	1	620	0
chr17	77515698	77516138	HeLa_polyA+_Chen.26689	0	.	77515698	77516138	0	1	440	0
chr17	77516780	77517755	HIT000033644	0	-	77516780	77517755	0	1	975	0
chr17	77516866	77517632	HepG2_Caltech_ENCODE.51888	0	.	77516866	77517632	0	1	766	0
chr17	77516942	77517568	B_Cells_Pritchard.2335823	0	-	77516942	77517568	0	1	626	0
chr17	77516959	77517789	A549_Myers.63205	0	.	77516959	77517789	0	1	830	0
chr17	77517935	77519541	A549_Myers.63199	0	.	77517935	77519541	0	1	1606	0
chr17	77765126	77766467	REMC_LuminalBreast.73373	0	.	77765126	77766467	0	1	1341	0
chr17	77765158	77765671	K562.32788	0	.	77765158	77765671	0	1	513	0
chr17	77765170	77765666	melanoma_Garraway_short_term_cultures.50280	0	.	77765170	77765666	0	1	496	0
chr17	77765320	77765641	HeLa_polyA+_Chen.26719	0	.	77765320	77765641	0	1	321	0
chr17	77765362	77765728	BT474_Burge_Thompson.25241	0	.	77765362	77765728	0	1	366	0
chr17	77765390	77768517	Rinn_00025256	0	-	77765390	77768517	0	2	1397,1656	0,1471
chr17	77765391	77768517	HIT000386073	0	+	77765391	77768517	0	2	1404,1647	0,1479
chr17	77765391	77768517	HIT000386072	0	-	77765391	77768517	0	2	1366,1004	0,2122
chr17	77765391	77768517	ENST00000508570	0	-	77765391	77768517	0	2	1396,1655	0,1471
chr17	77765991	77766850	B_cells_Cheung.141498	0	.	77765991	77766850	0	1	859	0
chr17	77766080	77767042	A549_Myers.63260	0	.	77766080	77767042	0	1	962	0
chr17	77767163	77769363	A549_Myers.63261	0	.	77767163	77769363	0	1	2200	0
chr17	77769610	77771252	A549_Myers.63262	0	.	77769610	77771252	0	1	1642	0
chr17	77772150	77773235	REMC_LuminalBreast.73374	0	.	77772150	77773235	0	1	1085	0
chr17	77776374	77777024	B_cells_Cheung.141501	0	.	77776374	77777024	0	1	650	0
chr17	77776427	77777063	A549_Myers.63263	0	.	77776427	77777063	0	1	636	0
chr17	77777179	77777849	A549_Myers.63264	0	.	77777179	77777849	0	1	670	0
chr17	77777700	77778252	B_cells_Cheung.141502	0	.	77777700	77778252	0	1	552	0
chr17	77825329	77826081	MeWo_Garraway.26984	0	+	77825329	77826081	0	2	319,25	0,727
chr17	77825953	77827299	ZR751_Thompson.17916	0	.	77825953	77827299	0	1	1346	0
chr17	77825979	77826983	MCF10A_Thompson.15848	0	.	77825979	77826983	0	1	1004	0
chr17	77826035	77826901	H9_polyA+.32802	0	.	77826035	77826901	0	1	866	0
chr17	77826203	77826915	NEC_from_H9.54897	0	.	77826203	77826915	0	1	712	0
chr17	77827407	77828991	K562.32811	0	.	77827407	77828991	0	1	1584	0
chr17	77827455	77846216	B_Cells_Pritchard.2336133	0	+	77827455	77846216	0	3	364,1487,1588	0,15007,17173
chr17	77827941	77829003	B_cells_Cheung.141516	0	.	77827941	77829003	0	1	1062	0
chr17	77828026	77828981	HeLa_polyA+_Chen.26721	0	.	77828026	77828981	0	1	955	0
chr17	77828045	77828999	MCF7_Burge_Thompson.23656	0	.	77828045	77828999	0	1	954	0
chr17	77828049	77828989	BT474_Burge_Thompson.25245	0	.	77828049	77828989	0	1	940	0
chr17	77828065	77828998	melanoma_Garraway_short_term_cultures.50303	0	.	77828065	77828998	0	1	933	0
chr17	77828101	77828982	T47D_Burge_Thompson.21725	0	.	77828101	77828982	0	1	881	0
chr17	77828418	77828998	ZR751_Thompson.17915	0	.	77828418	77828998	0	1	580	0
chr17	77828492	77828988	B_Cells_Pritchard.2336143	0	-	77828492	77828988	0	1	496	0
chr17	77832157	77832536	A549_Myers.63290	0	.	77832157	77832536	0	1	379	0
chr17	77832393	77833590	brain_AmbionMAQC.32473	0	.	77832393	77833590	0	1	1197	0
chr17	77832515	77833110	BT474_Burge_Thompson.25247	0	.	77832515	77833110	0	1	595	0
chr17	77832591	77833323	A549_Myers.63291	0	.	77832591	77833323	0	1	732	0
chr17	77833854	77835322	A549_Myers.63293	0	.	77833854	77835322	0	1	1468	0
chr17	77841040	77843936	REMC_LuminalBreast.73383	0	.	77841040	77843936	0	1	2896	0
chr17	77842314	77843732	REMC_BreastStem.37371	0	.	77842314	77843732	0	1	1418	0
chr17	77842315	77843689	REMC_MyoepithelialBreast.68005	0	.	77842315	77843689	0	1	1374	0
chr17	77842323	77843969	B_cells_Cheung.141519	0	.	77842323	77843969	0	1	1646	0
chr17	77842460	77844056	H1_polyA+.85193	0	.	77842460	77844056	0	1	1596	0
chr17	77842464	77843689	melanoma_Garraway_short_term_cultures.50305	0	.	77842464	77843689	0	1	1225	0
chr17	77842473	77846032	BT474_Burge_Thompson.25249	0	-	77842473	77846032	0	2	941,394	0,3165
chr17	77842532	77843330	prostate_carcinoma.78638	0	.	77842532	77843330	0	1	798	0
chr17	77842540	77843657	T47D_Burge_Thompson.21726	0	.	77842540	77843657	0	1	1117	0
chr17	77842902	77843445	MeWo_Garraway.26985	0	.	77842902	77843445	0	1	543	0
chr17	77842931	77843460	HepG2_Caltech_ENCODE.28609	0	.	77842931	77843460	0	1	529	0
chr17	77843544	77844376	A549_Myers.63301	0	.	77843544	77844376	0	1	832	0
chr17	77844097	77844530	colon_Burge.28324	0	+	77844097	77844530	0	2	232,72	0,361
chr17	77844097	77844526	B_cells_Cheung.141520	0	.	77844097	77844526	0	1	429	0
chr17	77844097	77845060	prostate_normal.45162	0	+	77844097	77845060	0	2	232,421	0,542
chr17	77844097	77844462	brain_AmbionMAQC.32474	0	.	77844097	77844462	0	1	365	0
chr17	77844099	77844427	B_Cells_Pritchard.2336155	0	+	77844099	77844427	0	1	328	0
chr17	77844102	77844470	adipose_Burge.29093	0	.	77844102	77844470	0	1	368	0
chr17	77844103	77845060	prostate_carcinoma.78635	0	+	77844103	77845060	0	2	226,421	0,536
chr17	77844104	77844534	MB435_Burge.31907	0	.	77844104	77844534	0	1	430	0
chr17	77844104	77844545	HME_Burge.30431	0	.	77844104	77844545	0	1	441	0
chr17	77844104	77844837	HME_Burge.30430	0	+	77844104	77844837	0	2	225,198	0,535
chr17	77844106	77844521	MCF7_Burge_Thompson.23657	0	.	77844106	77844521	0	1	415	0
chr17	77844106	77851808	T47D_Burge_Thompson.21727	0	+	77844106	77851808	0	3	223,228,72	0,229,7630
chr17	77844120	77844484	CD4_Plagnol_activated.47718	0	.	77844120	77844484	0	1	364	0
chr17	77844125	77844456	CD4_Plagnol_resting.46552	0	.	77844125	77844456	0	1	331	0
chr17	77844127	77850305	CD4_Snyder.54549	0	+	77844127	77850305	0	2	436,373	0,5805
chr17	77844141	77844558	H1_polyA+.85194	0	.	77844141	77844558	0	1	417	0
chr17	77844162	77844537	lymph_node_Burge.37224	0	.	77844162	77844537	0	1	375	0
chr17	77844169	77844803	breast_Burge.30198	0	+	77844169	77844803	0	2	160,164	0,470
chr17	77844598	77845055	lymph_node_Burge.37226	0	.	77844598	77845055	0	1	457	0
chr17	77844609	77846259	B_cells_Cheung.141521	0	.	77844609	77846259	0	1	1650	0
chr17	77844611	77846031	MCF7_Burge_Thompson.23658	0	.	77844611	77846031	0	1	1420	0
chr17	77844613	77846129	MIP101.50395	0	.	77844613	77846129	0	1	1516	0
chr17	77844617	77846073	H1_polyA+.85195	0	.	77844617	77846073	0	1	1456	0
chr17	77844619	77846048	CD4_Plagnol_activated.47719	0	.	77844619	77846048	0	1	1429	0
chr17	77844625	77845057	A549_Myers.63302	0	.	77844625	77845057	0	1	432	0
chr17	77844634	77846082	K562.32814	0	.	77844634	77846082	0	1	1448	0
chr17	77844644	77846052	brain_AmbionMAQC.32475	0	.	77844644	77846052	0	1	1408	0
chr17	77844645	77846052	CD4_Plagnol_resting.46553	0	.	77844645	77846052	0	1	1407	0
chr17	77844650	77846039	MDAMB468_Thompson.17715	0	.	77844650	77846039	0	1	1389	0
chr17	77844650	77845032	skeletal_muscle_Burge.21986	0	.	77844650	77845032	0	1	382	0
chr17	77844663	77846039	HeLa_polyA+_Chen.26722	0	.	77844663	77846039	0	1	1376	0
chr17	77844664	77846075	REMC_MyoepithelialBreast.68006	0	.	77844664	77846075	0	1	1411	0
chr17	77844673	77846066	REMC_LuminalBreast.73384	0	.	77844673	77846066	0	1	1393	0
chr17	77844676	77845962	T47D_Burge_Thompson.21728	0	.	77844676	77845962	0	1	1286	0
chr17	77844685	77846092	melanoma_Garraway_short_term_cultures.50306	0	.	77844685	77846092	0	1	1407	0
chr17	77844693	77846150	BT20_Thompson.15956	0	.	77844693	77846150	0	1	1457	0
chr17	77844719	77846035	REMC_BreastStem.37372	0	.	77844719	77846035	0	1	1316	0
chr17	77844753	77846073	MeWo_Garraway.26986	0	.	77844753	77846073	0	1	1320	0
chr17	77844880	77846073	HIT000048873	0	+	77844880	77846073	0	1	1193	0
chr17	77845208	77846031	H9_polyA+.32804	0	.	77845208	77846031	0	1	823	0
chr17	77845445	77846032	MDAMB231_Thompson.16409	0	.	77845445	77846032	0	1	587	0
chr17	77845485	77846031	MCF10A_Thompson.15850	0	.	77845485	77846031	0	1	546	0
chr17	77845498	77846032	BT474_Burge_Thompson.25250	0	.	77845498	77846032	0	1	534	0
chr17	77845568	77846091	A549_Myers.63304	0	.	77845568	77846091	0	1	523	0
chr17	77845602	77845967	MB435_Burge.31910	0	.	77845602	77845967	0	1	365	0
chr17	77845612	77846057	liver_polyA+.98572	0	.	77845612	77846057	0	1	445	0
chr17	77845622	77846031	colon_Burge.28326	0	.	77845622	77846031	0	1	409	0
chr17	77845665	77845971	skeletal_muscle_Burge.21988	0	.	77845665	77845971	0	1	306	0
chr17	77847423	77850009	B_Cells_Pritchard.2336165	0	+	77847423	77850009	0	1	2586	0
chr17	77847451	77849388	B_cells_Cheung.141522	0	.	77847451	77849388	0	1	1937	0
chr17	77847775	77848934	prostate_carcinoma.78639	0	.	77847775	77848934	0	1	1159	0
chr17	77848106	77848858	HeLa_polyA+_Chen.26723	0	.	77848106	77848858	0	1	752	0
chr17	77848127	77849864	REMC_LuminalBreast.73385	0	.	77848127	77849864	0	1	1737	0
chr17	77848211	77849299	REMC_MyoepithelialBreast.68007	0	.	77848211	77849299	0	1	1088	0
chr17	77848339	77848923	CD4_Snyder.54551	0	.	77848339	77848923	0	1	584	0
chr17	77848408	77850033	A549_Myers.63305	0	.	77848408	77850033	0	2	436,1049	0,576
chr17	77848453	77848912	prostate_normal.45166	0	.	77848453	77848912	0	1	459	0
chr17	77848984	77850305	CD4_Snyder.54550	0	.	77848984	77850305	0	1	1321	0
chr17	77849568	77850397	CD4_Plagnol_activated.47721	0	.	77849568	77850397	0	1	829	0
chr17	77851836	77853554	B_Cells_Pritchard.2336175	0	+	77851836	77853554	0	1	1718	0
chr17	77851916	77852789	A549_Myers.63306	0	.	77851916	77852789	0	1	873	0
chr17	77853317	77853671	A549_Myers.63307	0	.	77853317	77853671	0	1	354	0
chr17	77853662	77855166	B_cells_Cheung.141523	0	.	77853662	77855166	0	1	1504	0
chr17	77854390	77855148	A549_Myers.63308	0	.	77854390	77855148	0	1	758	0
chr17	77856304	77856994	prostate_carcinoma.72416	0	.	77856304	77856994	0	1	690	0
chr17	77856394	77856899	B_cells_Cheung.141524	0	.	77856394	77856899	0	1	505	0
chr17	77856632	77857339	CD4_Plagnol_activated.47722	0	.	77856632	77857339	0	1	707	0
chr17	77859750	77860634	CD4_Plagnol_activated.47723	0	.	77859750	77860634	0	1	884	0
chr17	77859997	77860592	CD4_Plagnol_resting.46671	0	.	77859997	77860592	0	1	595	0
chr17	77860179	77860618	A549_Myers.63309	0	.	77860179	77860618	0	1	439	0
chr17	77860883	77862632	CD4_Plagnol_activated.47724	0	.	77860883	77862632	0	1	1749	0
chr17	77887746	77888484	HeLa_polyA+_Chen.26729	0	.	77887746	77888484	0	1	738	0
chr17	77890024	77891189	BT474_Burge_Thompson.25260	0	.	77890024	77891189	0	1	1165	0
chr17	77890652	77896949	pHIT000030650	0	+	77890652	77896949	0	2	239,175	0,6122
chr17	77892115	77892525	HeLa_polyA+_Chen.26735	0	.	77892115	77892525	0	1	410	0
chr17	77893346	77893802	A549_Myers.63333	0	.	77893346	77893802	0	1	456	0
chr17	77899561	77900607	MIP101.50406	0	.	77899561	77900607	0	1	1046	0
chr17	77901701	77904073	MIP101.50407	0	.	77901701	77904073	0	1	2372	0
chr17	77901710	77904097	BT474_Burge_Thompson.25263	0	.	77901710	77904097	0	1	2387	0
chr17	77901834	77902275	A549_Myers.63336	0	.	77901834	77902275	0	1	441	0
chr17	77902261	77904050	prostate_carcinoma.72429	0	.	77902261	77904050	0	1	1789	0
chr17	77902522	77903373	A549_Myers.63337	0	.	77902522	77903373	0	1	851	0
chr17	77903153	77903856	prostate_normal.42768	0	.	77903153	77903856	0	1	703	0
chr17	77904397	77906360	BT474_Burge_Thompson.25264	0	.	77904397	77906360	0	1	1963	0
chr17	77904421	77905612	prostate_carcinoma.72430	0	.	77904421	77905612	0	1	1191	0
chr17	77904421	77905701	MIP101.50408	0	.	77904421	77905701	0	1	1280	0
chr17	77904526	77905627	T47D_Burge_Thompson.21732	0	.	77904526	77905627	0	1	1101	0
chr17	77906480	77907025	BT474_Burge_Thompson.25265	0	.	77906480	77907025	0	1	545	0
chr17	77906620	77907022	MIP101.50410	0	.	77906620	77907022	0	1	402	0
chr17	77906626	77907025	prostate_carcinoma.72432	0	.	77906626	77907025	0	1	399	0
chr17	77906639	77908315	T47D_Burge_Thompson.21733	0	.	77906639	77908315	0	1	1676	0
chr17	77907441	77908481	A549_Myers.63340	0	.	77907441	77908481	0	1	1040	0
chr17	77921662	77922160	A549_Myers.63344	0	.	77921662	77922160	0	1	498	0
chr17	77921845	77922860	HepG2_Caltech_ENCODE.27269	0	.	77921845	77922860	0	1	1015	0
chr17	77921859	77922982	REMC_BreastStem.37376	0	.	77921859	77922982	0	1	1123	0
chr17	77928581	77929665	REMC_LuminalBreast.73389	0	.	77928581	77929665	0	1	1084	0
chr17	77929197	77930338	B_Cells_Pritchard.2336429	0	-	77929197	77930338	0	2	263,327	0,814
chr17	77929227	77929699	prostate_normal.42769	0	.	77929227	77929699	0	1	472	0
chr17	77929236	77930334	brain_AmbionMAQC.32486	0	.	77929236	77930334	0	1	1098	0
chr17	77929248	77929744	A549_Myers.63348	0	.	77929248	77929744	0	1	496	0
chr17	77930629	77931628	prostate_carcinoma.72562	0	.	77930629	77931628	0	1	999	0
chr17	77930632	77931434	ZR751_Thompson.17929	0	.	77930632	77931434	0	1	802	0
chr17	77930647	77931544	BT474_Burge_Thompson.25267	0	.	77930647	77931544	0	1	897	0
chr17	77930648	77931636	B_Cells_Pritchard.2336433	0	-	77930648	77931636	0	1	988	0
chr17	77930701	77931545	brain_AmbionMAQC.32487	0	.	77930701	77931545	0	1	844	0
chr17	77930720	77931361	A549_Myers.63350	0	.	77930720	77931361	0	1	641	0
chr17	77930988	77931315	HeLa_polyA+_Chen.26742	0	.	77930988	77931315	0	1	327	0
chr17	77931171	77931545	B_cells_Cheung.141536	0	.	77931171	77931545	0	1	374	0
chr17	77931926	77933214	H1_polyA+.85201	0	.	77931926	77933214	0	1	1288	0
chr17	77932067	77933090	brain_AmbionMAQC.32635	0	.	77932067	77933090	0	1	1023	0
chr17	77932078	77933231	B_Cells_Pritchard.2336437	0	-	77932078	77933231	0	1	1153	0
chr17	77932117	77932721	melanoma_Garraway_short_term_cultures.50313	0	.	77932117	77932721	0	1	604	0
chr17	77932123	77932709	B_cells_Cheung.141537	0	.	77932123	77932709	0	1	586	0
chr17	77932312	77933131	HeLa_polyA+_Chen.26743	0	.	77932312	77933131	0	1	819	0
chr17	77932316	77932717	T47D_Burge_Thompson.21736	0	.	77932316	77932717	0	1	401	0
chr17	77933744	77934502	BT474_Burge_Thompson.25268	0	.	77933744	77934502	0	1	758	0
chr17	77933746	77937133	B_cells_Cheung.141539	0	-	77933746	77937133	0	2	590,2450	0,937
chr17	77933746	77934388	T47D_Burge_Thompson.21737	0	.	77933746	77934388	0	1	642	0
chr17	77933755	77934549	MIP101.50413	0	.	77933755	77934549	0	1	794	0
chr17	77933775	77934475	H1_polyA+.85202	0	.	77933775	77934475	0	1	700	0
chr17	77933814	77936513	REMC_MyoepithelialBreast.68014	0	-	77933814	77936513	0	2	522,1830	0,869
chr17	77933832	77934928	A549_Myers.63354	0	.	77933832	77934928	0	1	1096	0
chr17	77933988	77934813	Rinn_00025785	0	-	77933988	77934813	0	2	348,131	0,694
chr17	77934578	77936714	brain_AmbionMAQC.32640	0	.	77934578	77936714	0	1	2136	0
chr17	77934682	77937151	H1_polyA+.85203	0	.	77934682	77937151	0	1	2469	0
chr17	77934705	77935831	BT474_Burge_Thompson.25269	0	.	77934705	77935831	0	1	1126	0
chr17	77935249	77936388	BT20_Thompson.15965	0	.	77935249	77936388	0	1	1139	0
chr17	77935460	77937315	A549_Myers.63355	0	.	77935460	77937315	0	1	1855	0
chr17	77935465	77937293	T47D_Burge_Thompson.21739	0	.	77935465	77937293	0	1	1828	0
chr17	77935468	77936539	HeLa_polyA+_Chen.26745	0	.	77935468	77936539	0	1	1071	0
chr17	77935476	77936218	MCF7_Burge_Thompson.23663	0	.	77935476	77936218	0	1	742	0
chr17	77935890	77936715	BT474_Burge_Thompson.25270	0	.	77935890	77936715	0	1	825	0
chr17	77936341	77937038	liver_polyA+.98583	0	.	77936341	77937038	0	1	697	0
chr17	77937460	77938859	MIP101.50414	0	.	77937460	77938859	0	1	1399	0
chr17	77937507	77938187	BT474_Burge_Thompson.25272	0	.	77937507	77938187	0	1	680	0
chr17	77937570	77938290	BT20_Thompson.15966	0	.	77937570	77938290	0	1	720	0
chr17	77937575	77938166	HeLa_polyA+_Chen.26747	0	.	77937575	77938166	0	1	591	0
chr17	77937585	77938751	T47D_Burge_Thompson.21740	0	.	77937585	77938751	0	1	1166	0
chr17	77937663	77938033	liver_polyA+.98584	0	.	77937663	77938033	0	1	370	0
chr17	77937689	77938947	A549_Myers.63353	0	.	77937689	77938947	0	1	1258	0
chr17	77938033	77938381	liver_polyA+.98585	0	.	77938033	77938381	0	1	348	0
chr17	77938255	77938726	HeLa_polyA+_Chen.26746	0	.	77938255	77938726	0	1	471	0
chr17	77938297	77938816	BT474_Burge_Thompson.25273	0	.	77938297	77938816	0	1	519	0
chr17	77938348	77938775	H9_polyA+.32810	0	.	77938348	77938775	0	1	427	0
chr17	77938400	77939125	B_cells_Cheung.141541	0	.	77938400	77939125	0	1	725	0
chr17	77938440	77938777	liver_polyA+.98586	0	.	77938440	77938777	0	1	337	0
chr17	78004591	78005524	REMC_LuminalBreast.73401	0	.	78004591	78005524	0	1	933	0
chr17	78004626	78005629	B_cells_Cheung.142385	0	.	78004626	78005629	0	1	1003	0
chr17	78040489	78040868	testes_Burge.39419	0	.	78040489	78040868	0	1	379	0
chr17	78041815	78042451	B_cells_Cheung.141558	0	.	78041815	78042451	0	1	636	0
chr17	78042024	78042432	B_Cells_Pritchard.2336649	0	+	78042024	78042432	0	1	408	0
chr17	78042164	78042607	A549_Myers.63379	0	.	78042164	78042607	0	1	443	0
chr17	78045245	78046127	B_Cells_Pritchard.2336665	0	+	78045245	78046127	0	1	882	0
chr17	78045371	78046073	B_cells_Cheung.141562	0	.	78045371	78046073	0	1	702	0
chr17	78045427	78046067	A549_Myers.63381	0	.	78045427	78046067	0	1	640	0
chr17	78046055	78047795	REMC_BreastStem.37389	0	.	78046055	78047795	0	1	1740	0
chr17	78046427	78048045	B_cells_Cheung.141563	0	.	78046427	78048045	0	1	1618	0
chr17	78046434	78050135	B_Cells_Pritchard.2336671	0	-	78046434	78050135	0	3	65,297,62	0,202,3639
chr17	78047071	78048526	H1_polyA+.85215	0	.	78047071	78048526	0	1	1455	0
chr17	78047584	78048581	HepG2_Caltech_ENCODE.27283	0	.	78047584	78048581	0	1	997	0
chr17	78047840	78048575	A549_Myers.63383	0	.	78047840	78048575	0	1	735	0
chr17	78047990	78048423	MIP101.50432	0	.	78047990	78048423	0	1	433	0
chr17	78048150	78048614	B_cells_Cheung.141564	0	.	78048150	78048614	0	1	464	0
chr17	78049834	78050375	H1_polyA+.85217	0	.	78049834	78050375	0	1	541	0
chr17	78157075	78157826	MCF7_Burge_Thompson.23703	0	.	78157075	78157826	0	1	751	0
chr17	78158755	78159388	B_cells_Cheung.141714	0	.	78158755	78159388	0	1	633	0
chr17	78158761	78159399	REMC_BreastStem.37396	0	.	78158761	78159399	0	1	638	0
chr17	78158770	78159383	REMC_MyoepithelialBreast.68051	0	.	78158770	78159383	0	1	613	0
chr17	78158790	78159414	B_Cells_Pritchard.2336839	0	.	78158790	78159414	0	1	624	0
chr17	78159861	78161983	REMC_BreastStem.37398	0	.	78159861	78161983	0	1	2122	0
chr17	78159988	78161936	B_cells_Cheung.141716	0	.	78159988	78161936	0	1	1948	0
chr17	78160006	78161606	CD4_Plagnol_resting.46619	0	.	78160006	78161606	0	1	1600	0
chr17	78160079	78161907	H1_polyA+.85263	0	.	78160079	78161907	0	1	1828	0
chr17	78163589	78164221	B_cells_Cheung.141718	0	.	78163589	78164221	0	1	632	0
chr17	78164071	78165286	B_Cells_Pritchard.2336857	0	+	78164071	78165286	0	1	1215	0
chr17	78200013	78201822	HIT000096322	0	+	78200013	78201822	0	1	1809	0
chr17	78201810	78202288	BT474_Burge_Thompson.25311	0	.	78201810	78202288	0	1	478	0
chr17	78202981	78203446	prostate_carcinoma.72539	0	.	78202981	78203446	0	1	465	0
chr17	78203009	78203417	prostate_normal.43327	0	.	78203009	78203417	0	1	408	0
chr17	78203012	78203550	HepG2_Caltech_ENCODE.27307	0	.	78203012	78203550	0	1	538	0
chr17	78203857	78204186	A549_Myers.63425	0	.	78203857	78204186	0	1	329	0
chr17	78204629	78205750	prostate_carcinoma.72540	0	.	78204629	78205750	0	1	1121	0
chr17	78204642	78205735	brain_AmbionMAQC.32594	0	.	78204642	78205735	0	1	1093	0
chr17	78204806	78205338	A549_Myers.63426	0	.	78204806	78205338	0	1	532	0
chr17	78206141	78207127	A549_Myers.63427	0	.	78206141	78207127	0	1	986	0
chr17	78206177	78207033	BT20_Thompson.15976	0	.	78206177	78207033	0	1	856	0
chr17	78206189	78207127	ZR751_Thompson.17937	0	.	78206189	78207127	0	1	938	0
chr17	78206311	78206997	melanoma_Garraway_short_term_cultures.50357	0	.	78206311	78206997	0	1	686	0
chr17	78206408	78207115	BT474_Burge_Thompson.25312	0	.	78206408	78207115	0	1	707	0
chr17	78206592	78206941	testes_Burge.39447	0	.	78206592	78206941	0	1	349	0
chr17	78206751	78207121	MCF7_Burge_Thompson.23713	0	.	78206751	78207121	0	1	370	0
chr17	78254959	78256302	A549_Myers.63446	0	.	78254959	78256302	0	1	1343	0
chr17	78255064	78255691	brain_AmbionMAQC.32597	0	.	78255064	78255691	0	1	627	0
chr17	78255249	78256075	prostate_carcinoma.72561	0	.	78255249	78256075	0	1	826	0
chr17	78255300	78256502	Rinn_00025788	0	-	78255300	78256502	0	2	95,310	0,892
chr17	78256935	78257360	A549_Myers.63447	0	.	78256935	78257360	0	1	425	0
chr17	78260572	78261243	A549_Myers.63449	0	.	78260572	78261243	0	1	671	0
chr17	78261438	78262485	A549_Myers.63450	0	.	78261438	78262485	0	1	1047	0
chr17	78263871	78264343	A549_Myers.63451	0	.	78263871	78264343	0	1	472	0
chr17	78604172	78606190	prostate_carcinoma.72705	0	.	78604172	78606190	0	1	2018	0
chr17	78604237	78606177	MCF7_Burge_Thompson.23733	0	.	78604237	78606177	0	1	1940	0
chr17	78606462	78612055	MIP101.50511	0	+	78606462	78612055	0	2	129,2119	0,3474
chr17	78606955	78611041	prostate_carcinoma.72706	0	.	78606955	78611041	0	1	4086	0
chr17	78606998	78610795	MCF7_Burge_Thompson.23734	0	.	78606998	78610795	0	1	3797	0
chr17	78607054	78609926	MIP101.50512	0	.	78607054	78609926	0	1	2872	0
chr17	78607573	78608848	prostate_normal.42820	0	.	78607573	78608848	0	1	1275	0
chr17	78607573	78610935	prostate_normal.42822	0	+	78607573	78610935	0	2	552,423	0,2939
chr17	78608971	78609308	A549_Myers.63558	0	.	78608971	78609308	0	1	337	0
chr17	78610073	78610849	prostate_normal.42821	0	.	78610073	78610849	0	1	776	0
chr17	78610524	78610860	A549_Myers.63559	0	.	78610524	78610860	0	1	336	0
chr17	78613047	78613475	A549_Myers.63563	0	.	78613047	78613475	0	1	428	0
chr17	78614258	78614619	A549_Myers.63564	0	.	78614258	78614619	0	1	361	0
chr17	78615338	78615724	A549_Myers.63565	0	.	78615338	78615724	0	1	386	0
chr17	78620768	78621668	A549_Myers.63567	0	.	78620768	78621668	0	1	900	0
chr17	78623378	78624258	A549_Myers.63569	0	.	78623378	78624258	0	1	880	0
chr17	78624385	78625275	A549_Myers.63570	0	.	78624385	78625275	0	1	890	0
chr17	78628981	78629445	B_Cells_Pritchard.2337841	0	.	78628981	78629445	0	1	464	0
chr17	78629229	78629743	B_cells_Cheung.141722	0	.	78629229	78629743	0	1	514	0
chr17	78647228	78648839	REMC_MyoepithelialBreast.68090	0	.	78647228	78648839	0	1	1611	0
chr17	78647552	78648021	brain_AmbionMAQC.32618	0	.	78647552	78648021	0	1	469	0
chr17	78647685	78648504	MCF10A_Thompson.15881	0	.	78647685	78648504	0	1	819	0
chr17	78647756	78648670	BT20_Thompson.15994	0	.	78647756	78648670	0	1	914	0
chr17	78647780	78651236	T47D_Burge_Thompson.21803	0	.	78647780	78651236	0	1	3456	0
chr17	78647939	78648268	liver_polyA+.98793	0	.	78647939	78648268	0	1	329	0
chr17	78648227	78648734	breast_Burge.30291	0	.	78648227	78648734	0	1	507	0
chr17	78648822	78649708	ZR751_Thompson.17964	0	.	78648822	78649708	0	1	886	0
chr17	78648903	78650035	CD4_Plagnol_activated.47830	0	.	78648903	78650035	0	1	1132	0
chr17	78648910	78650644	REMC_BreastStem.37426	0	.	78648910	78650644	0	1	1734	0
chr17	78648915	78651676	REMC_LuminalBreast.73480	0	.	78648915	78651676	0	1	2761	0
chr17	78648918	78649760	MCF10A_Thompson.15882	0	.	78648918	78649760	0	1	842	0
chr17	78648919	78650613	REMC_MyoepithelialBreast.68091	0	.	78648919	78650613	0	1	1694	0
chr17	78648952	78650977	BT20_Thompson.15995	0	.	78648952	78650977	0	1	2025	0
chr17	78649043	78650006	MIP101.50515	0	.	78649043	78650006	0	1	963	0
chr17	78649379	78650143	HeLa_polyA+_Chen.26809	0	.	78649379	78650143	0	1	764	0
chr17	78649462	78650377	brain_AmbionMAQC.32620	0	.	78649462	78650377	0	1	915	0
chr17	78649480	78649944	liver_polyA+.98795	0	.	78649480	78649944	0	1	464	0
chr17	78650242	78650835	A549_Myers.63581	0	.	78650242	78650835	0	1	593	0
chr17	78650448	78651253	liver_polyA+.98796	0	.	78650448	78651253	0	1	805	0
chr17	78650913	78651227	A549_Myers.63582	0	.	78650913	78651227	0	1	314	0
chr17	78650959	78651489	CD4_Plagnol_resting.46667	0	.	78650959	78651489	0	1	530	0
chr17	78651032	78651488	breast_Burge.30282	0	.	78651032	78651488	0	1	456	0
chr17	78651080	78651470	adipose_Burge.29201	0	.	78651080	78651470	0	1	390	0
chr17	78651990	78653741	T47D_Burge_Thompson.21804	0	.	78651990	78653741	0	1	1751	0
chr17	78652005	78652968	brain_AmbionMAQC.32621	0	.	78652005	78652968	0	1	963	0
chr17	78652011	78653382	HeLa_polyA+_Chen.26810	0	.	78652011	78653382	0	1	1371	0
chr17	78652014	78653120	ZR751_Thompson.17965	0	.	78652014	78653120	0	1	1106	0
chr17	78652037	78654024	REMC_LuminalBreast.73481	0	.	78652037	78654024	0	1	1987	0
chr17	78652041	78652602	BT20_Thompson.15998	0	.	78652041	78652602	0	1	561	0
chr17	78652056	78654034	REMC_BreastStem.37427	0	.	78652056	78654034	0	1	1978	0
chr17	78652290	78653754	H1_polyA+.85384	0	.	78652290	78653754	0	1	1464	0
chr17	78652345	78652903	HeLa_polyA-_Chen.14475	0	.	78652345	78652903	0	1	558	0
chr17	78652347	78652794	liver_polyA+.98797	0	.	78652347	78652794	0	1	447	0
chr17	78652762	78653603	A549_Myers.63584	0	.	78652762	78653603	0	1	841	0
chr17	78652916	78653757	BT20_Thompson.16004	0	.	78652916	78653757	0	1	841	0
chr17	78653995	78654433	CD4_Plagnol_resting.46668	0	.	78653995	78654433	0	1	438	0
chr17	78654031	78654740	prostate_carcinoma.72590	0	.	78654031	78654740	0	1	709	0
chr17	78654034	78654738	prostate_normal.42833	0	.	78654034	78654738	0	1	704	0
chr17	78654096	78654738	REMC_LuminalBreast.73482	0	.	78654096	78654738	0	1	642	0
chr17	78654113	78654613	BT20_Thompson.16005	0	.	78654113	78654613	0	1	500	0
chr17	78654134	78654651	REMC_BreastStem.37428	0	.	78654134	78654651	0	1	517	0
chr17	78654137	78654618	H1_polyA+.85385	0	.	78654137	78654618	0	1	481	0
chr17	78654147	78654693	REMC_MyoepithelialBreast.68093	0	.	78654147	78654693	0	1	546	0
chr17	78654150	78654567	T47D_Burge_Thompson.21805	0	.	78654150	78654567	0	1	417	0
chr17	78654235	78654553	breast_Burge.30285	0	.	78654235	78654553	0	1	318	0
chr17	78654281	78654742	MCF7_Burge_Thompson.23737	0	.	78654281	78654742	0	1	461	0
chr18	1641	2076	A549_Myers.63585	0	.	1641	2076	0	1	435	0
chr18	2250	6882	Rinn_00026224	0	+	2250	6882	0	3	133,204,1267	0,900,3365
chr18	127411	131924	Rinn_00026225	0	+	127411	131924	0	2	112,445	0,4068
chr18	130968	132236	BT474_Burge_Thompson.25358	0	.	130968	132236	0	1	1268	0
chr18	258147	260278	HIT000022398	0	+	258147	260278	0	1	2131	0
chr18	258148	258890	BT474_Burge_Thompson.25381	0	+	258148	258890	0	2	476,102	0,640
chr18	259083	260069	REMC_LuminalBreast.73527	0	.	259083	260069	0	1	986	0
chr18	262190	263185	prostate_carcinoma.72614	0	.	262190	263185	0	1	995	0
chr18	263526	266563	MIP101.50553	0	.	263526	266563	0	1	3037	0
chr18	263723	266609	H1_polyA+.85391	0	.	263723	266609	0	1	2886	0
chr18	265524	267060	B_cells_Cheung.141767	0	.	265524	267060	0	1	1536	0
chr18	282564	283193	B_Cells_Pritchard.2338225	0	.	282564	283193	0	1	629	0
chr18	294771	295328	REMC_BreastStem.37431	0	.	294771	295328	0	1	557	0
chr18	300953	303297	prostate_normal.42848	0	.	300953	303297	0	1	2344	0
chr18	302301	303637	REMC_BreastStem.37434	0	.	302301	303637	0	1	1336	0
chr18	305593	307983	REMC_BreastStem.37437	0	.	305593	307983	0	1	2390	0
chr18	305790	307145	BT474_Burge_Thompson.25384	0	.	305790	307145	0	1	1355	0
chr18	491052	505331	pHIT000118034	0	+	491052	505331	0	2	39,992	0,13287
chr18	822137	822446	A549_Myers.63631	0	.	822137	822446	0	1	309	0
chr18	822157	822511	HepG2_Caltech_ENCODE.27373	0	.	822157	822511	0	1	354	0
chr18	846542	846970	K562.32965	0	.	846542	846970	0	1	428	0
chr18	846546	846992	B_Cells_Pritchard.2339349	0	.	846546	846992	0	1	446	0
chr18	846602	846968	HepG2_Caltech_ENCODE.27374	0	.	846602	846968	0	1	366	0
chr18	846607	846944	melanoma_Garraway_short_term_cultures.50443	0	.	846607	846944	0	1	337	0
chr18	846621	846944	MeWo_Garraway.27069	0	.	846621	846944	0	1	323	0
chr18	846652	846966	H1_polyA+.85463	0	.	846652	846966	0	1	314	0
chr18	916035	917994	HIT000095860	0	-	916035	917994	0	2	849,60	0,1899
chr18	955705	958453	H1_polyA+.85466	0	.	955705	958453	0	1	2748	0
chr18	955803	957298	BT20_Thompson.16021	0	.	955803	957298	0	1	1495	0
chr18	966823	1174024	H1_polyA+.85467	0	+	966823	1174024	0	4	73,110,643,194	0,157020,182356,207007
chr18	972810	973869	melanoma_Garraway_short_term_cultures.50444	0	.	972810	973869	0	1	1059	0
chr18	980029	981347	H1_polyA+.85471	0	.	980029	981347	0	1	1318	0
chr18	983258	984249	MIP101.50578	0	.	983258	984249	0	1	991	0
chr18	983292	984189	K562.32969	0	.	983292	984189	0	1	897	0
chr18	994285	995015	MIP101.50580	0	.	994285	995015	0	1	730	0
chr18	995792	996931	MIP101.50582	0	.	995792	996931	0	1	1139	0
chr18	1106383	1106841	BT474_Burge_Thompson.25411	0	.	1106383	1106841	0	1	458	0
chr18	1115986	1116924	REMC_LuminalBreast.73545	0	.	1115986	1116924	0	1	938	0
chr18	1149180	1149485	MIP101.50585	0	.	1149180	1149485	0	1	305	0
chr18	1155150	1166701	H1_polyA+.85485	0	.	1155150	1166701	0	1	11551	0
chr18	1155153	1157056	K562.32975	0	.	1155153	1157056	0	1	1903	0
chr18	1196944	1197809	H1_polyA+.85493	0	.	1196944	1197809	0	1	865	0
chr18	1216914	1218208	H1_polyA+.85501	0	.	1216914	1218208	0	1	1294	0
chr18	1228431	1230663	MIP101.50592	0	.	1228431	1230663	0	1	2232	0
chr18	1230791	1231631	MIP101.50593	0	.	1230791	1231631	0	1	840	0
chr18	1353606	1354001	melanoma_Garraway_short_term_cultures.50459	0	.	1353606	1354001	0	1	395	0
chr18	1353617	1354069	K562.33030	0	.	1353617	1354069	0	1	452	0
chr18	1353671	1354401	B_cells_Cheung.142030	0	.	1353671	1354401	0	1	730	0
chr18	3053064	3053478	skeletal_muscle_Raymond.71908	0	.	3053064	3053478	0	1	414	0
chr18	3212659	3213198	B_cells_Cheung.142219	0	.	3212659	3213198	0	1	539	0
chr18	3214225	3214571	B_Cells_Pritchard.2344527	0	.	3214225	3214571	0	1	346	0
chr18	3215155	3217144	B_cells_Cheung.142222	0	.	3215155	3217144	0	1	1989	0
chr18	3215301	3216013	B_Cells_Pritchard.2344533	0	.	3215301	3216013	0	1	712	0
chr18	3219990	3221720	B_cells_Cheung.142225	0	.	3219990	3221720	0	1	1730	0
chr18	3226219	3227093	REMC_LuminalBreast.73760	0	.	3226219	3227093	0	1	874	0
chr18	3228284	3231960	K562.33190	0	.	3228284	3231960	0	1	3676	0
chr18	3228473	3232651	REMC_MyoepithelialBreast.68257	0	.	3228473	3232651	0	1	4178	0
chr18	3229109	3232599	REMC_LuminalBreast.73762	0	.	3229109	3232599	0	1	3490	0
chr18	3230446	3232216	B_Cells_Pritchard.2344575	0	.	3230446	3232216	0	1	1770	0
chr18	3231012	3231967	HeLa_polyA+_Chen.26879	0	.	3231012	3231967	0	1	955	0
chr18	3231708	3232265	HepG2_Caltech_ENCODE.27426	0	.	3231708	3232265	0	1	557	0
chr18	3232761	3234655	REMC_LuminalBreast.73763	0	.	3232761	3234655	0	1	1894	0
chr18	3233193	3234622	B_cells_Cheung.142233	0	.	3233193	3234622	0	1	1429	0
chr18	3236059	3236473	brain_AmbionMAQC.32722	0	.	3236059	3236473	0	1	414	0
chr18	3273208	3274227	melanoma_Garraway_short_term_cultures.50523	0	.	3273208	3274227	0	1	1019	0
chr18	3279010	3279877	MCF7_Burge_Thompson.23798	0	.	3279010	3279877	0	1	867	0
chr18	3281153	3282581	MDAMB468_Thompson.17824	0	.	3281153	3282581	0	1	1428	0
chr18	3295533	3349415	pHIT000118051	0	-	3295533	3349415	0	2	99,306	0,53576
chr18	3295533	3349415	pHIT000030710	0	-	3295533	3349415	0	4	99,95,160,306	0,13930,25903,53576
chr18	3295533	3349415	pHIT000092104	0	-	3295533	3349415	0	6	99,95,114,101,122,306	0,13930,18484,39688,42331,53576
chr18	3305498	3306401	K562.33091	0	.	3305498	3306401	0	1	903	0
chr18	3305507	3306681	H1_polyA+.85651	0	.	3305507	3306681	0	1	1174	0
chr18	3305957	3306696	HeLa_polyA+_Chen.26897	0	.	3305957	3306696	0	1	739	0
chr18	3316600	3317703	melanoma_Garraway_short_term_cultures.50525	0	.	3316600	3317703	0	1	1103	0
chr18	3331707	3333662	HeLa_polyA+_Chen.26918	0	.	3331707	3333662	0	1	1955	0
chr18	3334736	3335752	REMC_MyoepithelialBreast.68248	0	.	3334736	3335752	0	1	1016	0
chr18	3362079	3365526	BT20_Thompson.16085	0	.	3362079	3365526	0	1	3447	0
chr18	3363939	3364500	HeLa_polyA-_Chen.14543	0	.	3363939	3364500	0	1	561	0
chr18	3363998	3364346	A549_Myers.63690	0	.	3363998	3364346	0	1	348	0
chr18	3368799	3372989	BT20_Thompson.16088	0	.	3368799	3372989	0	1	4190	0
chr18	3371687	3372075	HeLa_polyA+_Chen.26971	0	.	3371687	3372075	0	1	388	0
chr18	3383675	3385942	BT20_Thompson.16049	0	.	3383675	3385942	0	1	2267	0
chr18	3384792	3385966	MDAMB468_Thompson.17823	0	.	3384792	3385966	0	1	1174	0
chr18	3461215	3461558	prostate_normal.42955	0	.	3461215	3461558	0	1	343	0
chr18	3467411	3468381	prostate_normal.42966	0	.	3467411	3468381	0	1	970	0
chr18	3467434	3468194	REMC_MyoepithelialBreast.68262	0	.	3467434	3468194	0	1	760	0
chr18	3467929	3468967	REMC_LuminalBreast.73645	0	.	3467929	3468967	0	1	1038	0
chr18	3467951	3468975	MIP101.50699	0	.	3467951	3468975	0	1	1024	0
chr18	3468381	3468981	prostate_normal.42957	0	.	3468381	3468981	0	1	600	0
chr18	3475845	3476946	REMC_LuminalBreast.73647	0	.	3475845	3476946	0	1	1101	0
chr18	3951560	3951990	A549_Myers.63727	0	.	3951560	3951990	0	1	430	0
chr18	3970892	3979689	B_cells_Cheung.145613	0	.	3970892	3979689	0	1	8797	0
chr18	3983972	3984642	B_Cells_Pritchard.2346973	0	.	3983972	3984642	0	1	670	0
chr18	3989335	3991012	B_Cells_Pritchard.2346987	0	.	3989335	3991012	0	1	1677	0
chr18	3991356	3995322	B_Cells_Pritchard.2346989	0	+	3991356	3995322	0	2	2065,416	0,3550
chr18	4001826	4002832	B_Cells_Pritchard.2347021	0	.	4001826	4002832	0	1	1006	0
chr18	4009985	4011114	B_Cells_Pritchard.2347057	0	.	4009985	4011114	0	1	1129	0
chr18	4058629	4061182	B_cells_Cheung.145654	0	.	4058629	4061182	0	1	2553	0
chr18	4084881	4090786	B_Cells_Pritchard.2347493	0	+	4084881	4090786	0	4	2845,207,374,805	0,2952,4704,5100
chr18	4092836	4093352	B_Cells_Pritchard.2347483	0	.	4092836	4093352	0	1	516	0
chr18	4102434	4105499	H1_polyA+.85963	0	.	4102434	4105499	0	1	3065	0
chr18	4102452	4102758	melanoma_Garraway_short_term_cultures.50583	0	.	4102452	4102758	0	1	306	0
chr18	4105401	4109832	B_Cells_Pritchard.2347529	0	.	4105401	4109832	0	1	4431	0
chr18	4109982	4111735	B_Cells_Pritchard.2347527	0	.	4109982	4111735	0	1	1753	0
chr18	4110909	4111266	H9_polyA+.33015	0	.	4110909	4111266	0	1	357	0
chr18	4117527	4126947	B_cells_Cheung.145665	0	.	4117527	4126947	0	1	9420	0
chr18	4118320	4120999	B_Cells_Pritchard.2347543	0	.	4118320	4120999	0	1	2679	0
chr18	4159886	4160572	H1_polyA+.85990	0	.	4159886	4160572	0	1	686	0
chr18	4167548	4168597	H1_polyA+.85994	0	.	4167548	4168597	0	1	1049	0
chr18	4174794	4177271	H1_polyA+.85655	0	.	4174794	4177271	0	1	2477	0
chr18	4202565	4213149	H1_polyA+.85667	0	.	4202565	4213149	0	1	10584	0
chr18	4213289	4216769	H1_polyA+.85668	0	.	4213289	4216769	0	1	3480	0
chr18	4214389	4215069	B_Cells_Pritchard.2347869	0	.	4214389	4215069	0	1	680	0
chr18	4214489	4215578	REMC_LuminalBreast.73695	0	.	4214489	4215578	0	1	1089	0
chr18	4225917	4240985	H1_polyA+.85672	0	.	4225917	4240985	0	1	15068	0
chr18	4238443	4239335	B_Cells_Pritchard.2347967	0	.	4238443	4239335	0	1	892	0
chr18	4238643	4239289	H1_rRNA-depleted_UCSD_REMC.63904	0	.	4238643	4239289	0	1	646	0
chr18	4247741	4259322	H1_polyA+.85675	0	.	4247741	4259322	0	1	11581	0
chr18	4253495	4258656	B_cells_Cheung.142270	0	.	4253495	4258656	0	1	5161	0
chr18	4254007	4264461	B_Cells_Pritchard.2348093	0	+	4254007	4264461	0	3	1210,2554,2843	0,1691,7611
chr18	4254214	4255198	prostate_carcinoma.72864	0	.	4254214	4255198	0	1	984	0
chr18	4254247	4255600	REMC_LuminalBreast.73702	0	.	4254247	4255600	0	1	1353	0
chr18	4254601	4286000	NR_036489	0	+	4254601	4286000	0	3	300,79,2841	0,10699,28558
chr18	4254632	4285405	HIT000023010	0	+	4254632	4285405	0	3	269,79,2246	0,10668,28527
chr18	4255690	4257466	prostate_carcinoma.72863	0	.	4255690	4257466	0	1	1776	0
chr18	4259612	4266422	H1_polyA+.85676	0	.	4259612	4266422	0	1	6810	0
chr18	4262415	4264962	B_cells_Cheung.142271	0	.	4262415	4264962	0	1	2547	0
chr18	4263695	4264489	REMC_LuminalBreast.73707	0	.	4263695	4264489	0	1	794	0
chr18	4264651	4265503	REMC_LuminalBreast.73708	0	.	4264651	4265503	0	1	852	0
chr18	4265076	4265786	B_Cells_Pritchard.2348037	0	.	4265076	4265786	0	1	710	0
chr18	4272364	4277334	H1_polyA+.85678	0	.	4272364	4277334	0	1	4970	0
chr18	4276582	4277245	melanoma_Garraway_short_term_cultures.50588	0	.	4276582	4277245	0	1	663	0
chr18	4276586	4277238	REMC_LuminalBreast.73713	0	.	4276586	4277238	0	1	652	0
chr18	4282655	4288447	H1_polyA+.85681	0	.	4282655	4288447	0	1	5792	0
chr18	4283062	4286003	B_Cells_Pritchard.2348121	0	.	4283062	4286003	0	1	2941	0
chr18	4283928	4284684	prostate_carcinoma.72866	0	.	4283928	4284684	0	1	756	0
chr18	4288870	4294837	H1_polyA+.85682	0	.	4288870	4294837	0	1	5967	0
chr18	4289002	4294660	B_cells_Cheung.142275	0	.	4289002	4294660	0	1	5658	0
chr18	4291547	4292517	B_Cells_Pritchard.2348137	0	.	4291547	4292517	0	1	970	0
chr18	4292652	4294223	B_Cells_Pritchard.2348133	0	.	4292652	4294223	0	1	1571	0
chr18	4294912	4301767	B_cells_Cheung.142277	0	.	4294912	4301767	0	1	6855	0
chr18	4294960	4298307	B_Cells_Pritchard.2348143	0	-	4294960	4298307	0	2	314,367	0,2980
chr18	4301995	4302656	B_cells_Cheung.142278	0	.	4301995	4302656	0	1	661	0
chr18	4302035	4323649	H1_polyA+.85686	0	.	4302035	4323649	0	1	21614	0
chr18	4302871	4305564	B_cells_Cheung.142279	0	.	4302871	4305564	0	1	2693	0
chr18	4305640	4310356	B_cells_Cheung.142280	0	.	4305640	4310356	0	1	4716	0
chr18	4306327	4307449	B_Cells_Pritchard.2348189	0	.	4306327	4307449	0	1	1122	0
chr18	4311725	4322372	B_cells_Cheung.142282	0	.	4311725	4322372	0	1	10647	0
chr18	4311787	4313007	B_Cells_Pritchard.2348209	0	.	4311787	4313007	0	1	1220	0
chr18	4320651	4348110	B_Cells_Pritchard.2348339	0	+	4320651	4348110	0	3	1585,136,4346	0,6668,23113
chr18	4323741	4326908	B_cells_Cheung.142284	0	.	4323741	4326908	0	1	3167	0
chr18	4324272	4326864	H1_polyA+.85687	0	.	4324272	4326864	0	1	2592	0
chr18	4327160	4348110	B_Cells_Pritchard.2348341	0	-	4327160	4348110	0	2	339,3224	0,17726
chr18	4333761	4353519	H1_polyA+.85690	0	.	4333761	4353519	0	1	19758	0
chr18	4333780	4336261	B_cells_Cheung.142291	0	.	4333780	4336261	0	1	2481	0
chr18	4334621	4335309	H9_polyA-_Chen.10619	0	.	4334621	4335309	0	1	688	0
chr18	4343761	4350736	B_cells_Cheung.142296	0	.	4343761	4350736	0	1	6975	0
chr18	4344925	4347164	prostate_carcinoma.72872	0	.	4344925	4347164	0	1	2239	0
chr18	4345497	4345868	prostate_normal.42991	0	.	4345497	4345868	0	1	371	0
chr18	4345860	4350692	REMC_LuminalBreast.73731	0	.	4345860	4350692	0	1	4832	0
chr18	4345916	4346321	H9_polyA+.33047	0	.	4345916	4346321	0	1	405	0
chr18	4345923	4347149	prostate_normal.42992	0	.	4345923	4347149	0	1	1226	0
chr18	4346374	4347163	melanoma_Garraway_short_term_cultures.50589	0	.	4346374	4347163	0	1	789	0
chr18	4351277	4353522	B_cells_Cheung.142298	0	.	4351277	4353522	0	1	2245	0
chr18	4352996	4353512	B_Cells_Pritchard.2348231	0	.	4352996	4353512	0	1	516	0
chr18	4357836	4368083	H1_polyA+.85692	0	.	4357836	4368083	0	1	10247	0
chr18	4358794	4364333	B_cells_Cheung.142303	0	.	4358794	4364333	0	1	5539	0
chr18	4358875	4360150	B_Cells_Pritchard.2348247	0	.	4358875	4360150	0	1	1275	0
chr18	4359982	4360914	melanoma_Garraway_short_term_cultures.50592	0	.	4359982	4360914	0	1	932	0
chr18	4360277	4361182	B_Cells_Pritchard.2348249	0	.	4360277	4361182	0	1	905	0
chr18	4361474	4363308	REMC_LuminalBreast.73733	0	.	4361474	4363308	0	1	1834	0
chr18	4368165	4377800	H1_polyA+.85693	0	.	4368165	4377800	0	1	9635	0
chr18	4373397	4379535	B_cells_Cheung.142310	0	.	4373397	4379535	0	1	6138	0
chr18	4377939	4383963	H1_polyA+.85694	0	.	4377939	4383963	0	1	6024	0
chr18	4383249	4383836	H1_rRNA-depleted_UCSD_REMC.63951	0	.	4383249	4383836	0	1	587	0
chr18	4384024	4404603	H1_polyA+.85695	0	.	4384024	4404603	0	1	20579	0
chr18	4387380	4391654	B_cells_Cheung.142313	0	.	4387380	4391654	0	1	4274	0
chr18	4389970	4390717	B_Cells_Pritchard.2348471	0	.	4389970	4390717	0	1	747	0
chr18	4394680	4398655	B_cells_Cheung.142318	0	.	4394680	4398655	0	1	3975	0
chr18	4397904	4399056	REMC_LuminalBreast.73738	0	.	4397904	4399056	0	1	1152	0
chr18	4400572	4404137	B_cells_Cheung.142322	0	.	4400572	4404137	0	1	3565	0
chr18	4402903	4403576	B_Cells_Pritchard.2348523	0	.	4402903	4403576	0	1	673	0
chr18	4407358	4413930	H1_polyA+.85697	0	.	4407358	4413930	0	1	6572	0
chr18	4409868	4412172	B_cells_Cheung.142328	0	.	4409868	4412172	0	1	2304	0
chr18	4412690	4416916	B_cells_Cheung.142329	0	.	4412690	4416916	0	1	4226	0
chr18	4414117	4429985	H1_polyA+.85698	0	.	4414117	4429985	0	1	15868	0
chr18	4415065	4416295	REMC_LuminalBreast.73740	0	.	4415065	4416295	0	1	1230	0
chr18	4416866	4417773	melanoma_Garraway_short_term_cultures.50595	0	.	4416866	4417773	0	1	907	0
chr18	4416989	4422431	B_cells_Cheung.142330	0	.	4416989	4422431	0	1	5442	0
chr18	4417018	4417808	H9_polyA-_Chen.10628	0	.	4417018	4417808	0	1	790	0
chr18	4417066	4418005	prostate_carcinoma.72876	0	.	4417066	4418005	0	1	939	0
chr18	4417917	4418709	H9_polyA-_Chen.10629	0	.	4417917	4418709	0	1	792	0
chr18	4430116	4435299	H1_polyA+.85699	0	.	4430116	4435299	0	1	5183	0
chr18	4430119	4435316	B_cells_Cheung.142334	0	.	4430119	4435316	0	1	5197	0
chr18	4435614	4444854	H1_polyA+.85700	0	.	4435614	4444854	0	1	9240	0
chr18	4443371	4445942	B_cells_Cheung.142339	0	.	4443371	4445942	0	1	2571	0
chr18	4443615	4445311	H9_polyA-_Chen.10642	0	.	4443615	4445311	0	1	1696	0
chr18	4443693	4445560	B_Cells_Pritchard.2348707	0	.	4443693	4445560	0	1	1867	0
chr18	4444222	4444543	H1_rRNA-depleted_UCSD_REMC.63970	0	.	4444222	4444543	0	1	321	0
chr18	4444757	4446090	pHIT000030715	0	+	4444757	4446090	0	2	80,259	0,1074
chr18	4444786	4445299	melanoma_Garraway_short_term_cultures.50596	0	.	4444786	4445299	0	1	513	0
chr18	4444809	4445468	H9_polyA+.33049	0	.	4444809	4445468	0	1	659	0
chr18	4444965	4445285	H1_rRNA-depleted_UCSD_REMC.63968	0	.	4444965	4445285	0	1	320	0
chr18	4444984	4445639	H1_polyA+.85701	0	.	4444984	4445639	0	1	655	0
chr18	4445002	4449407	prostate_carcinoma.72878	0	+	4445002	4449407	0	2	306,61	0,4344
chr18	4445003	4445369	prostate_normal.42994	0	.	4445003	4445369	0	1	366	0
chr18	4445006	4445562	brain_AmbionMAQC.32737	0	.	4445006	4445562	0	1	556	0
chr18	4445730	4446294	B_Cells_Pritchard.2348695	0	.	4445730	4446294	0	1	564	0
chr18	4656660	4657258	BT474_Burge_Thompson.25447	0	.	4656660	4657258	0	1	598	0
chr18	4656722	4657159	MDAMB468_Thompson.17867	0	.	4656722	4657159	0	1	437	0
chr18	4656794	4657346	B_Cells_Pritchard.2349097	0	.	4656794	4657346	0	1	552	0
chr18	4942617	4943026	B_Cells_Pritchard.2349685	0	.	4942617	4943026	0	1	409	0
chr18	4991490	4993320	H1_polyA+.85710	0	.	4991490	4993320	0	1	1830	0
chr18	4992606	5007417	B_Cells_Pritchard.2349825	0	+	4992606	5007417	0	2	527,77	0,14734
chr18	4992764	4993196	melanoma_Garraway_short_term_cultures.50598	0	.	4992764	4993196	0	1	432	0
chr18	4992766	4993273	B_cells_Cheung.142343	0	.	4992766	4993273	0	1	507	0
chr18	5080235	5080782	K562.33125	0	.	5080235	5080782	0	1	547	0
chr18	5187324	5187878	pHIT000118061	0	+	5187324	5187878	0	2	85,218	0,336
chr18	5199509	5204978	Rinn_00026245	0	+	5199509	5204978	0	2	461,746	0,4723
chr18	5219179	5220031	HepG2_Caltech_ENCODE.27444	0	.	5219179	5220031	0	1	852	0
chr18	5232500	5236435	prostate_carcinoma.72883	0	-	5232500	5236435	0	2	654,2580	0,1355
chr18	5232535	5235935	NEC_from_H9.55261	0	-	5232535	5235935	0	2	619,2080	0,1320
chr18	5232563	5236492	prostate_normal.42998	0	-	5232563	5236492	0	2	591,2637	0,1292
chr18	5236088	5236428	testes_Burge.39665	0	.	5236088	5236428	0	1	340	0
chr18	5236090	5236391	NEC_from_H9.55259	0	.	5236090	5236391	0	1	301	0
chr18	5252033	5252563	B_Cells_Pritchard.2350335	0	.	5252033	5252563	0	1	530	0
chr18	5255472	5256177	REMC_BreastStem.37586	0	.	5255472	5256177	0	1	705	0
chr18	5309250	5309696	B_cells_Cheung.142354	0	.	5309250	5309696	0	1	446	0
chr18	5369249	5371167	REMC_BreastStem.37597	0	.	5369249	5371167	0	1	1918	0
chr18	5376326	5377677	REMC_BreastStem.37600	0	.	5376326	5377677	0	1	1351	0
chr18	5722268	5722962	BT474_Burge_Thompson.25459	0	.	5722268	5722962	0	1	694	0
chr18	5802920	5859360	pHIT000092124	0	+	5802920	5859360	0	7	127,53,54,121,52,201,460	0,11154,15178,20614,25887,26388,55980
chr18	5802920	5859354	pHIT000091951	0	+	5802920	5859354	0	7	127,53,54,121,52,201,454	0,11154,15178,20614,25887,26388,55980
chr18	5818098	5859360	pHIT000030725	0	+	5818098	5859360	0	5	54,121,52,201,460	0,5436,10709,11210,40802
chr18	5885018	5885581	B_Cells_Pritchard.2351877	0	.	5885018	5885581	0	1	563	0
chr18	5885044	5885524	brain_AmbionMAQC.32774	0	.	5885044	5885524	0	1	480	0
chr18	5885650	5886303	brain_AmbionMAQC.32775	0	.	5885650	5886303	0	1	653	0
chr18	5885745	5886751	REMC_BreastStem.37611	0	.	5885745	5886751	0	1	1006	0
chr18	5885765	5886850	REMC_MyoepithelialBreast.68304	0	.	5885765	5886850	0	1	1085	0
chr18	5888062	5892737	H1_polyA+.85740	0	.	5888062	5892737	0	1	4675	0
chr18	5893125	5943283	pHIT000118068	0	+	5893125	5943283	0	5	61,84,58,136,282	0,10468,28701,35359,49876
chr18	5893125	5928620	pHIT000118066	0	+	5893125	5928620	0	4	61,84,58,136	0,10468,28701,35359
chr18	5893252	5898404	H1_polyA+.85741	0	.	5893252	5898404	0	1	5152	0
chr18	5904895	5913472	H1_polyA+.85738	0	.	5904895	5913472	0	1	8577	0
chr18	5937419	5939605	REMC_MyoepithelialBreast.68308	0	.	5937419	5939605	0	1	2186	0
chr18	5937915	5939514	REMC_LuminalBreast.73779	0	.	5937915	5939514	0	1	1599	0
chr18	5942550	5943397	HepG2_Caltech_ENCODE.27448	0	.	5942550	5943397	0	1	847	0
chr18	6531150	6580629	pHIT000118074	0	+	6531150	6580629	0	4	45,169,29,96	0,25374,48295,49383
chr18	6673354	6673829	K562.33133	0	.	6673354	6673829	0	1	475	0
chr18	6694816	6695140	K562.33134	0	.	6694816	6695140	0	1	324	0
chr18	6706392	6707312	K562.33140	0	.	6706392	6707312	0	1	920	0
chr18	6712299	6713172	K562.33142	0	.	6712299	6713172	0	1	873	0
chr18	6713612	6715398	K562.33143	0	.	6713612	6715398	0	1	1786	0
chr18	6910237	6910948	HepG2_Caltech_ENCODE.27489	0	.	6910237	6910948	0	1	711	0
chr18	6910238	6910631	prostate_normal.43027	0	.	6910238	6910631	0	1	393	0
chr18	6910277	6910662	adipose_Burge.29325	0	.	6910277	6910662	0	1	385	0
chr18	6910451	6910916	K562.33151	0	.	6910451	6910916	0	1	465	0
chr18	6915475	6918522	prostate_carcinoma.72922	0	-	6915475	6918522	0	3	2108,100,87	0,2643,2960
chr18	6915476	6918234	ENST00000512930	0	-	6915476	6918234	0	2	2107,116	0,2642
chr18	6915476	6918551	HIT000020202	0	-	6915476	6918551	0	3	2107,100,116	0,2642,2959
chr18	6915524	6917600	K562.33153	0	.	6915524	6917600	0	1	2076	0
chr18	6915656	6919944	HepG2_Caltech_ENCODE.27490	0	-	6915656	6919944	0	3	1927,100,1095	0,2462,3193
chr18	6915795	6919008	BT20_Thompson.16081	0	-	6915795	6919008	0	3	1788,100,159	0,2323,3054
chr18	6915938	6917568	melanoma_Garraway_short_term_cultures.50639	0	.	6915938	6917568	0	1	1630	0
chr18	6916663	6917394	REMC_MyoepithelialBreast.68458	0	.	6916663	6917394	0	1	731	0
chr18	8402514	8403159	K562.33155	0	.	8402514	8403159	0	1	645	0
chr18	8402669	8403858	melanoma_Garraway_short_term_cultures.50651	0	.	8402669	8403858	0	1	1189	0
chr18	8402670	8403165	CD4_Plagnol_resting.46868	0	.	8402670	8403165	0	1	495	0
chr18	8402671	8403295	B_cells_Cheung.142606	0	.	8402671	8403295	0	1	624	0
chr18	8402691	8403162	HepG2_Caltech_ENCODE.27497	0	.	8402691	8403162	0	1	471	0
chr18	8402720	8403801	MIP101.50745	0	.	8402720	8403801	0	1	1081	0
chr18	8402720	8403420	B_Cells_Pritchard.2358079	0	.	8402720	8403420	0	1	700	0
chr18	8402720	8403275	CD4_Plagnol_activated.48100	0	.	8402720	8403275	0	1	555	0
chr18	8402726	8403406	prostate_carcinoma.72966	0	.	8402726	8403406	0	1	680	0
chr18	8402727	8403739	NEC_from_H9.55346	0	+	8402727	8403739	0	2	395,258	0,754
chr18	8402727	8403159	NEC_from_H9.55345	0	.	8402727	8403159	0	1	432	0
chr18	8402728	8403170	H9_polyA+.33086	0	.	8402728	8403170	0	1	442	0
chr18	8402836	8403156	MCF7_Burge_Thompson.23833	0	.	8402836	8403156	0	1	320	0
chr18	8575660	8577087	B_Cells_Pritchard.2358575	0	.	8575660	8577087	0	1	1427	0
chr18	8576102	8578890	B_cells_Cheung.142621	0	-	8576102	8578890	0	2	929,379	0,2409
chr18	8576102	8577212	B_cells_Cheung.142622	0	.	8576102	8577212	0	1	1110	0
chr18	8577304	8577790	B_cells_Cheung.142624	0	.	8577304	8577790	0	1	486	0
chr18	8584939	8585329	B_cells_Cheung.142630	0	.	8584939	8585329	0	1	390	0
chr18	8592796	8593213	B_cells_Cheung.142636	0	.	8592796	8593213	0	1	417	0
chr18	8593887	8594602	B_cells_Cheung.142637	0	.	8593887	8594602	0	1	715	0
chr18	8680188	8680722	brain_AmbionMAQC.32788	0	.	8680188	8680722	0	1	534	0
chr18	8687597	8687979	brain_AmbionMAQC.33052	0	.	8687597	8687979	0	1	382	0
chr18	8691408	8692341	brain_AmbionMAQC.33055	0	.	8691408	8692341	0	1	933	0
chr18	8691728	8692064	A549_Myers.63849	0	.	8691728	8692064	0	1	336	0
chr18	8693138	8694432	brain_AmbionMAQC.33056	0	.	8693138	8694432	0	1	1294	0
chr18	8694533	8695106	brain_AmbionMAQC.33057	0	.	8694533	8695106	0	1	573	0
chr18	8903856	8912954	K562.33250	0	-	8903856	8912954	0	2	7423,8	0,9090
chr18	8903856	8911298	K562.33251	0	+	8903856	8911298	0	3	5209,547,1177	0,5709,6265
chr18	8941644	8944407	K562.33258	0	.	8941644	8944407	0	1	2763	0
chr18	8942761	8943528	MDAMB468_Thompson.17893	0	.	8942761	8943528	0	1	767	0
chr18	8980052	8980592	B_Cells_Pritchard.2359621	0	.	8980052	8980592	0	1	540	0
chr18	9005710	9007195	REMC_LuminalBreast.73824	0	.	9005710	9007195	0	1	1485	0
chr18	9006728	9007118	B_cells_Cheung.142651	0	.	9006728	9007118	0	1	390	0
chr18	9007399	9007759	A549_Myers.63860	0	.	9007399	9007759	0	1	360	0
chr18	9050573	9051952	B_cells_Cheung.142655	0	.	9050573	9051952	0	1	1379	0
chr18	9052011	9052818	B_Cells_Pritchard.2359905	0	+	9052011	9052818	0	1	807	0
chr18	9052485	9052903	B_cells_Cheung.142657	0	.	9052485	9052903	0	1	418	0
chr18	9055238	9055796	B_Cells_Pritchard.2360185	0	+	9055238	9055796	0	1	558	0
chr18	9281847	9282630	CD4_Plagnol_resting.47929	0	.	9281847	9282630	0	1	783	0
chr18	9281860	9283111	H1_polyA+.86119	0	.	9281860	9283111	0	1	1251	0
chr18	9286063	9288963	REMC_MyoepithelialBreast.68592	0	.	9286063	9288963	0	1	2900	0
chr18	9286866	9287554	CD4_Plagnol_resting.47933	0	.	9286866	9287554	0	1	688	0
chr18	9287694	9289166	REMC_LuminalBreast.73908	0	.	9287694	9289166	0	1	1472	0
chr18	9288356	9324481	MIP101.50997	0	-	9288356	9324481	0	4	28,1965,2109,347	0,19444,21685,35778
chr18	9290225	9291567	REMC_LuminalBreast.73909	0	.	9290225	9291567	0	1	1342	0
chr18	9295509	9298561	REMC_MyoepithelialBreast.68598	0	.	9295509	9298561	0	1	3052	0
chr18	9296203	9298902	REMC_BreastStem.37671	0	.	9296203	9298902	0	1	2699	0
chr18	9298075	9298498	CD4_Plagnol_resting.46887	0	.	9298075	9298498	0	1	423	0
chr18	9303407	9304327	REMC_BreastStem.37672	0	.	9303407	9304327	0	1	920	0
chr18	9303521	9304432	REMC_LuminalBreast.73915	0	.	9303521	9304432	0	1	911	0
chr18	9304575	9305192	H1_polyA+.86065	0	.	9304575	9305192	0	1	617	0
chr18	9306505	9324479	H1_polyA+.86068	0	-	9306505	9324479	0	3	2674,91,345	0,5554,17629
chr18	9308297	9310124	REMC_LuminalBreast.73917	0	.	9308297	9310124	0	1	1827	0
chr18	9308529	9324468	prostate_carcinoma.73017	0	-	9308529	9324468	0	3	589,2181,334	0,1529,15605
chr18	9308634	9324457	MDAMB468_Thompson.17904	0	-	9308634	9324457	0	3	545,91,323	0,3425,15500
chr18	9308641	9324452	HepG2_Caltech_ENCODE.27532	0	-	9308641	9324452	0	3	477,91,318	0,3418,15493
chr18	9308682	9324498	B_Cells_Pritchard.2360447	0	-	9308682	9324498	0	3	436,91,364	0,3377,15452
chr18	9308682	9324450	MCF7_Burge_Thompson.23845	0	-	9308682	9324450	0	3	436,91,316	0,3377,15452
chr18	9308961	9324444	prostate_normal.43096	0	-	9308961	9324444	0	3	157,91,310	0,3098,15173
chr18	9309496	9310403	H1_polyA+.86069	0	.	9309496	9310403	0	1	907	0
chr18	9310069	9310552	B_cells_Cheung.142677	0	.	9310069	9310552	0	1	483	0
chr18	9310069	9310425	prostate_normal.43097	0	.	9310069	9310425	0	1	356	0
chr18	9310930	9324457	B_cells_Cheung.142678	0	-	9310930	9324457	0	2	1220,323	0,13204
chr18	9312057	9324462	Rinn_00026411	0	-	9312057	9324462	0	2	93,329	0,12076
chr18	9394349	9394891	REMC_MyoepithelialBreast.68606	0	.	9394349	9394891	0	1	542	0
chr18	9409887	9411182	REMC_BreastStem.37679	0	.	9409887	9411182	0	1	1295	0
chr18	9423138	9424719	B_cells_Cheung.142711	0	.	9423138	9424719	0	1	1581	0
chr18	9423140	9425674	B_Cells_Pritchard.2361499	0	+	9423140	9425674	0	1	2534	0
chr18	9424789	9431356	B_cells_Cheung.142710	0	-	9424789	9431356	0	2	2368,174	0,6393
chr18	9436046	9436944	REMC_BreastStem.37682	0	.	9436046	9436944	0	1	898	0
chr18	9436176	9436943	B_Cells_Pritchard.2360779	0	.	9436176	9436943	0	1	767	0
chr18	9436228	9436765	B_cells_Cheung.142712	0	.	9436228	9436765	0	1	537	0
chr18	9529113	9532188	B_cells_Cheung.142770	0	.	9529113	9532188	0	1	3075	0
chr18	9529485	9530569	REMC_MyoepithelialBreast.68640	0	.	9529485	9530569	0	1	1084	0
chr18	9532649	9533387	REMC_MyoepithelialBreast.68642	0	.	9532649	9533387	0	1	738	0
chr18	9532914	9533575	B_cells_Cheung.142771	0	.	9532914	9533575	0	1	661	0
chr18	9661176	9662525	REMC_LuminalBreast.73974	0	.	9661176	9662525	0	1	1349	0
chr18	9692374	9695183	B_Cells_Pritchard.2361421	0	.	9692374	9695183	0	1	2809	0
chr18	9694343	9695272	B_cells_Cheung.142809	0	.	9694343	9695272	0	1	929	0
chr18	9853579	9854222	MCF7_Burge_Thompson.23862	0	.	9853579	9854222	0	1	643	0
chr18	9854544	9856559	K562.33271	0	.	9854544	9856559	0	1	2015	0
chr18	9855605	9857036	BT20_Thompson.16136	0	.	9855605	9857036	0	1	1431	0
chr18	9856199	9856920	BT474_Burge_Thompson.25519	0	.	9856199	9856920	0	1	721	0
chr18	9856616	9857101	K562.33272	0	.	9856616	9857101	0	1	485	0
chr18	9886683	9887710	REMC_MyoepithelialBreast.68686	0	.	9886683	9887710	0	1	1027	0
chr18	9886753	9887964	K562.33280	0	.	9886753	9887964	0	1	1211	0
chr18	9951010	9999385	pHIT000092091	0	-	9951010	9999385	0	6	277,153,248,105,240,60	0,8177,13026,25283,31371,48315
chr18	9957948	9958761	REMC_LuminalBreast.74033	0	.	9957948	9958761	0	1	813	0
chr18	9957983	9960513	REMC_MyoepithelialBreast.68699	0	.	9957983	9960513	0	1	2530	0
chr18	9961537	9965589	REMC_LuminalBreast.74035	0	.	9961537	9965589	0	1	4052	0
chr18	9963840	9965634	REMC_MyoepithelialBreast.68701	0	.	9963840	9965634	0	1	1794	0
chr18	9971840	9972178	REMC_MyoepithelialBreast.68705	0	.	9971840	9972178	0	1	338	0
chr18	9972257	9974761	REMC_MyoepithelialBreast.68702	0	.	9972257	9974761	0	1	2504	0
chr18	9972583	9975835	REMC_LuminalBreast.74038	0	.	9972583	9975835	0	1	3252	0
chr18	9977376	9978387	REMC_MyoepithelialBreast.68707	0	.	9977376	9978387	0	1	1011	0
chr18	10074966	10081873	MIP101.50840	0	.	10074966	10081873	0	1	6907	0
chr18	10130955	10132554	MIP101.50843	0	.	10130955	10132554	0	1	1599	0
chr18	10189054	10191309	MIP101.50848	0	.	10189054	10191309	0	1	2255	0
chr18	10233284	10237598	HIT000016409	0	-	10233284	10237598	0	3	197,1769,198	0,1110,4116
chr18	10260386	10261160	K562.33293	0	.	10260386	10261160	0	1	774	0
chr18	10330520	10331408	MeI_Garraway.13307	0	.	10330520	10331408	0	1	888	0
chr18	10397025	10400448	Rinn_00026418	0	-	10397025	10400448	0	3	21,120,730	0,725,2693
chr18	10401592	10404512	HIT000096125	0	-	10401592	10404512	0	1	2920	0
chr18	10438517	10443090	REMC_LuminalBreast.74039	0	.	10438517	10443090	0	1	4573	0
chr18	10438532	10441538	prostate_normal.43126	0	.	10438532	10441538	0	1	3006	0
chr18	10439945	10441106	MIP101.50851	0	.	10439945	10441106	0	1	1161	0
chr18	10439994	10441839	H1_polyA+.86176	0	.	10439994	10441839	0	1	1845	0
chr18	10592409	10594027	REMC_LuminalBreast.74055	0	.	10592409	10594027	0	1	1618	0
chr18	10592458	10593498	REMC_MyoepithelialBreast.68738	0	.	10592458	10593498	0	1	1040	0
chr18	10594363	10595786	REMC_LuminalBreast.74056	0	.	10594363	10595786	0	1	1423	0
chr18	10594688	10595449	MIP101.50885	0	.	10594688	10595449	0	1	761	0
chr18	10595016	10595563	REMC_MyoepithelialBreast.68739	0	.	10595016	10595563	0	1	547	0
chr18	10595149	10595449	K562.33305	0	.	10595149	10595449	0	1	300	0
chr18	10606814	10612686	pHIT000030757	0	-	10606814	10612686	0	3	200,194,14	0,1898,5858
chr18	11479030	11480912	Rinn_00026279	0	+	11479030	11480912	0	2	1210,535	0,1347
chr18	11555682	11557080	B_Cells_Pritchard.2366137	0	.	11555682	11557080	0	1	1398	0
chr18	11555710	11557136	B_cells_Cheung.143075	0	.	11555710	11557136	0	1	1426	0
chr18	11557844	11559214	B_cells_Cheung.143077	0	.	11557844	11559214	0	1	1370	0
chr18	11647113	11647887	testes_Burge.39808	0	.	11647113	11647887	0	1	774	0
chr18	11656440	11660164	HIT000093523	0	-	11656440	11660164	0	1	3724	0
chr18	11919964	11921685	REMC_MyoepithelialBreast.68790	0	.	11919964	11921685	0	1	1721	0
chr18	11926092	11927535	H1_polyA+.86274	0	.	11926092	11927535	0	1	1443	0
chr18	11926275	11926852	B_Cells_Pritchard.2366875	0	.	11926275	11926852	0	1	577	0
chr18	11926582	11927480	REMC_MyoepithelialBreast.68791	0	.	11926582	11927480	0	1	898	0
chr18	11933463	11935628	H1_polyA+.86278	0	.	11933463	11935628	0	1	2165	0
chr18	11937575	11938287	B_Cells_Pritchard.2366923	0	.	11937575	11938287	0	1	712	0
chr18	11937642	11938168	B_cells_Cheung.143112	0	.	11937642	11938168	0	1	526	0
chr18	12025541	12026291	H1_polyA+.86304	0	.	12025541	12026291	0	1	750	0
chr18	12028151	12029388	A549_Myers.63985	0	.	12028151	12029388	0	1	1237	0
chr18	12028687	12036325	pHIT000118128	0	+	12028687	12036325	0	2	676,104	0,7534
chr18	12028687	12029410	pHIT000030768	0	+	12028687	12029410	0	1	723	0
chr18	12030392	12032060	melanoma_Garraway_short_term_cultures.50787	0	.	12030392	12032060	0	1	1668	0
chr18	12030758	12031520	MeWo_Garraway.27295	0	.	12030758	12031520	0	1	762	0
chr18	12033633	12034395	B_Cells_Pritchard.2367241	0	.	12033633	12034395	0	1	762	0
chr18	12036015	12036497	B_cells_Cheung.143128	0	.	12036015	12036497	0	1	482	0
chr18	12063223	12066467	HIT000026308	0	-	12063223	12066467	0	1	3244	0
chr18	12063229	12066653	XR_038506	0	-	12063229	12066653	0	2	3326,90	0,3334
chr18	12063229	12066653	XR_015403	0	-	12063229	12066653	0	1	3424	0
chr18	12065074	12069751	XR_037218	0	-	12065074	12069751	0	3	1481,23,134	0,1489,4543
chr18	12065289	12066460	REMC_MyoepithelialBreast.68800	0	.	12065289	12066460	0	1	1171	0
chr18	12065289	12066462	REMC_LuminalBreast.74069	0	.	12065289	12066462	0	1	1173	0
chr18	12065292	12066457	H1_polyA+.86308	0	.	12065292	12066457	0	1	1165	0
chr18	12065869	12066458	HepG2_Caltech_ENCODE.27604	0	.	12065869	12066458	0	1	589	0
chr18	12065870	12066452	REMC_BreastStem.37784	0	.	12065870	12066452	0	1	582	0
chr18	12065871	12066451	H9_polyA+.33192	0	.	12065871	12066451	0	1	580	0
chr18	12065873	12066439	HeLa_polyA+_Chen.27081	0	.	12065873	12066439	0	1	566	0
chr18	12065877	12066440	H9_polyA-_Chen.10682	0	.	12065877	12066440	0	1	563	0
chr18	12065893	12066436	MDAMB231_Thompson.16571	0	.	12065893	12066436	0	1	543	0
chr18	12065895	12066436	MCF10A_Thompson.16004	0	.	12065895	12066436	0	1	541	0
chr18	12065895	12066433	T47D_Burge_Thompson.21926	0	.	12065895	12066433	0	1	538	0
chr18	12065895	12066436	ZR751_Thompson.18125	0	.	12065895	12066436	0	1	541	0
chr18	12065897	12066420	MCF7_Burge_Thompson.23886	0	.	12065897	12066420	0	1	523	0
chr18	12065898	12066425	BT474_Burge_Thompson.25553	0	.	12065898	12066425	0	1	527	0
chr18	12065900	12066421	BT20_Thompson.16156	0	.	12065900	12066421	0	1	521	0
chr18	12065900	12066429	B_Cells_Pritchard.2367383	0	.	12065900	12066429	0	1	529	0
chr18	12065903	12066404	HeLa_polyA-_Chen.14645	0	.	12065903	12066404	0	1	501	0
chr18	12065907	12066414	brain_AmbionMAQC.32875	0	.	12065907	12066414	0	1	507	0
chr18	12065908	12066423	prostate_carcinoma.73202	0	.	12065908	12066423	0	1	515	0
chr18	12065909	12066427	melanoma_Garraway_short_term_cultures.50791	0	.	12065909	12066427	0	1	518	0
chr18	12066056	12066436	B_cells_Cheung.143138	0	.	12066056	12066436	0	1	380	0
chr18	12066056	12066436	MDAMB468_Thompson.17959	0	.	12066056	12066436	0	1	380	0
chr18	12066069	12066423	prostate_normal.43193	0	.	12066069	12066423	0	1	354	0
chr18	12066069	12066420	NEC_from_H9.55564	0	.	12066069	12066420	0	1	351	0
chr18	12066071	12066465	A549_Myers.64019	0	.	12066071	12066465	0	1	394	0
chr18	12066085	12066404	HeLa_Bartel_WT_12hr.24916	0	.	12066085	12066404	0	1	319	0
chr18	12066085	12066411	HeLa_Bartel_miR-155_12hr.24909	0	.	12066085	12066411	0	1	326	0
chr18	12077069	12077462	A549_Myers.64020	0	.	12077069	12077462	0	1	393	0
chr18	12081597	12082044	B_cells_Cheung.143139	0	.	12081597	12082044	0	1	447	0
chr18	12081606	12082798	B_Cells_Pritchard.2367415	0	-	12081606	12082798	0	2	238,72	0,1120
chr18	12082105	12082521	B_cells_Cheung.143140	0	.	12082105	12082521	0	1	416	0
chr18	12082561	12083308	A549_Myers.64023	0	.	12082561	12083308	0	1	747	0
chr18	12218873	12224483	Rinn_00026427	0	-	12218873	12224483	0	2	1979,185	0,5425
chr18	12227174	12227720	A549_Myers.64025	0	.	12227174	12227720	0	1	546	0
chr18	12277957	12278325	A549_Myers.64030	0	.	12277957	12278325	0	1	368	0
chr18	12281085	12281523	prostate_normal.43199	0	.	12281085	12281523	0	1	438	0
chr18	12281103	12281986	REMC_LuminalBreast.74074	0	.	12281103	12281986	0	1	883	0
chr18	12281106	12281583	prostate_carcinoma.73213	0	.	12281106	12281583	0	1	477	0
chr18	12296174	12296571	adipose_Burge.29424	0	.	12296174	12296571	0	1	397	0
chr18	12296181	12296571	testes_Burge.39837	0	.	12296181	12296571	0	1	390	0
chr18	12296228	12296984	REMC_BreastStem.37787	0	.	12296228	12296984	0	1	756	0
chr18	12374153	12375089	H1_polyA+.86334	0	.	12374153	12375089	0	1	936	0
chr18	12423593	12425204	B_cells_Cheung.143260	0	.	12423593	12425204	0	1	1611	0
chr18	12423745	12425469	B_Cells_Pritchard.2367927	0	-	12423745	12425469	0	1	1724	0
chr18	12423758	12427456	H1_polyA+.86347	0	.	12423758	12427456	0	1	3698	0
chr18	12424278	12424651	H9_polyA+.33218	0	.	12424278	12424651	0	1	373	0
chr18	12425588	12426433	B_cells_Cheung.143261	0	.	12425588	12426433	0	1	845	0
chr18	12432848	12434037	melanoma_Garraway_short_term_cultures.50842	0	.	12432848	12434037	0	1	1189	0
chr18	12432851	12434488	K562.33370	0	.	12432851	12434488	0	1	1637	0
chr18	12432956	12434092	MIP101.51042	0	.	12432956	12434092	0	1	1136	0
chr18	12433355	12434093	prostate_normal.43228	0	.	12433355	12434093	0	1	738	0
chr18	12433369	12434047	REMC_BreastStem.37796	0	.	12433369	12434047	0	1	678	0
chr18	12729782	12739484	Rinn_00026679	0	-	12729782	12739484	0	2	147,193	0,9509
chr18	12757022	12757446	A549_Myers.64081	0	.	12757022	12757446	0	1	424	0
chr18	12764752	12765873	prostate_carcinoma.73322	0	.	12764752	12765873	0	1	1121	0
chr18	12767308	12767754	prostate_carcinoma.73323	0	.	12767308	12767754	0	1	446	0
chr18	12767344	12767741	H1_polyA+.86424	0	.	12767344	12767741	0	1	397	0
chr18	12767592	12768020	B_Cells_Pritchard.2368901	0	.	12767592	12768020	0	1	428	0
chr18	13644062	13644687	CD4_Plagnol_resting.47119	0	.	13644062	13644687	0	1	625	0
chr18	13644081	13644444	pHIT000030805	0	+	13644081	13644444	0	1	363	0
chr18	13647863	13648413	MIP101.51120	0	.	13647863	13648413	0	1	550	0
chr18	13647877	13648620	CD4_Plagnol_activated.48633	0	.	13647877	13648620	0	1	743	0
chr18	13759288	13762125	REMC_MyoepithelialBreast.69059	0	.	13759288	13762125	0	1	2837	0
chr18	13759318	13760151	REMC_LuminalBreast.74288	0	.	13759318	13760151	0	1	833	0
chr18	13858442	13859178	brain_AmbionMAQC.32989	0	.	13858442	13859178	0	1	736	0
chr18	13859277	13860727	brain_AmbionMAQC.32990	0	.	13859277	13860727	0	1	1450	0
chr18	13860878	13861323	brain_AmbionMAQC.32991	0	.	13860878	13861323	0	1	445	0
chr18	13861623	13862743	brain_AmbionMAQC.32992	0	.	13861623	13862743	0	1	1120	0
chr18	14037852	14039093	B_Cells_Pritchard.2372119	0	.	14037852	14039093	0	1	1241	0
chr18	14039649	14041038	H1_polyA+.86565	0	.	14039649	14041038	0	1	1389	0
chr18	14039707	14040923	MIP101.51145	0	.	14039707	14040923	0	1	1216	0
chr18	14044352	14045567	prostate_carcinoma.73519	0	.	14044352	14045567	0	1	1215	0
chr18	14044451	14044803	liver_polyA+.100070	0	.	14044451	14044803	0	1	352	0
chr18	14047047	14047704	prostate_carcinoma.73521	0	.	14047047	14047704	0	1	657	0
chr18	14047894	14051187	H1_polyA+.86569	0	.	14047894	14051187	0	1	3293	0
chr18	14047905	14051250	B_cells_Cheung.143602	0	.	14047905	14051250	0	1	3345	0
chr18	14048128	14048977	B_Cells_Pritchard.2372145	0	-	14048128	14048977	0	1	849	0
chr18	14063805	14075307	B_Cells_Pritchard.2372165	0	-	14063805	14075307	0	4	696,2887,99,432	0,833,4393,11070
chr18	14064589	14067632	B_cells_Cheung.143610	0	.	14064589	14067632	0	1	3043	0
chr18	14064663	14067525	brain_AmbionMAQC.33003	0	-	14064663	14067525	0	2	760,193	0,2669
chr18	14065099	14075081	H9_polyA+.33313	0	-	14065099	14075081	0	4	324,499,99,206	0,1927,3099,9776
chr18	14065682	14067527	REMC_LuminalBreast.74293	0	.	14065682	14067527	0	1	1845	0
chr18	14066206	14067537	melanoma_Garraway_short_term_cultures.50972	0	.	14066206	14067537	0	1	1331	0
chr18	14066465	14075186	prostate_carcinoma.73526	0	-	14066465	14075186	0	3	1060,99,311	0,1733,8410
chr18	14066551	14067512	NEC_from_H9.55717	0	.	14066551	14067512	0	1	961	0
chr18	14066621	14067674	BT474_Burge_Thompson.25630	0	.	14066621	14067674	0	1	1053	0
chr18	14066654	14067525	brain_AmbionMAQC.33005	0	.	14066654	14067525	0	1	871	0
chr18	14066676	14067534	HepG2_Caltech_ENCODE.27690	0	.	14066676	14067534	0	1	858	0
chr18	14067130	14068293	prostate_normal.43451	0	-	14067130	14068293	0	2	395,95	0,1068
chr18	14067176	14067493	H1_rRNA-depleted_UCSD_REMC.64395	0	.	14067176	14067493	0	1	317	0
chr18	14079431	14080934	B_Cells_Pritchard.2372185	0	.	14079431	14080934	0	1	1503	0
chr18	14079487	14080849	khalil_914	0	.	14079487	14080849	0	1	1362	0
chr18	14079583	14080961	prostate_carcinoma.73529	0	.	14079583	14080961	0	1	1378	0
chr18	14079584	14086545	MIP101.51156	0	.	14079584	14086545	0	1	6961	0
chr18	14079589	14080937	melanoma_Garraway_short_term_cultures.50973	0	.	14079589	14080937	0	1	1348	0
chr18	14079796	14080892	B_cells_Cheung.143622	0	.	14079796	14080892	0	1	1096	0
chr18	14079817	14080937	HeLa_polyA+_Chen.27216	0	.	14079817	14080937	0	1	1120	0
chr18	14079933	14081032	HIT000093481	0	+	14079933	14081032	0	1	1099	0
chr18	14079958	14080780	K562.33451	0	.	14079958	14080780	0	1	822	0
chr18	14080023	14080999	REMC_LuminalBreast.74294	0	.	14080023	14080999	0	1	976	0
chr18	14080412	14080721	testes_Burge.39922	0	.	14080412	14080721	0	1	309	0
chr18	14081191	14084443	B_cells_Cheung.143623	0	.	14081191	14084443	0	1	3252	0
chr18	14081222	14083354	prostate_carcinoma.73530	0	.	14081222	14083354	0	1	2132	0
chr18	14081223	14083425	B_Cells_Pritchard.2372187	0	.	14081223	14083425	0	1	2202	0
chr18	14081674	14082516	H9_polyA+.33315	0	.	14081674	14082516	0	1	842	0
chr18	14081693	14082868	melanoma_Garraway_short_term_cultures.50974	0	.	14081693	14082868	0	1	1175	0
chr18	14081698	14082732	HeLa_polyA+_Chen.27218	0	.	14081698	14082732	0	1	1034	0
chr18	14081888	14082541	prostate_normal.43453	0	.	14081888	14082541	0	1	653	0
chr18	14081922	14082588	K562.33452	0	.	14081922	14082588	0	1	666	0
chr18	14083692	14085695	REMC_LuminalBreast.74296	0	.	14083692	14085695	0	1	2003	0
chr18	14084951	14086492	prostate_carcinoma.73534	0	.	14084951	14086492	0	1	1541	0
chr18	14085027	14085402	NEC_from_H9.55723	0	.	14085027	14085402	0	1	375	0
chr18	14299987	14300385	B_cells_Cheung.143700	0	.	14299987	14300385	0	1	398	0
chr18	14322195	14322647	B_Cells_Pritchard.2372815	0	.	14322195	14322647	0	1	452	0
chr18	14326127	14336678	pHIT000030808	0	+	14326127	14336678	0	6	118,163,302,142,114,31	0,412,917,1401,5393,10520
chr18	14327421	14332587	HIT000094739	0	+	14327421	14332587	0	4	1474,129,270,1067	0,2089,2959,4099
chr18	14327421	14332523	NR_026756	0	+	14327421	14332523	0	4	1474,129,270,1003	0,2089,2959,4099
chr18	14381404	14407175	XR_037389	0	-	14381404	14407175	0	4	1670,941,185,130	0,1670,23308,25641
chr18	14381404	14384015	XR_017132	0	-	14381404	14384015	0	3	1670,843,25	0,1670,2586
chr18	14382087	14384015	XR_079233	0	-	14382087	14384015	0	2	970,811	0,1117
chr18	14620519	14620877	K562.33464	0	.	14620519	14620877	0	1	358	0
chr18	14846754	14851509	HIT000045747	0	+	14846754	14851509	0	3	1768,414,1287	0,2668,3468
chr18	14923380	14923732	BT474_Burge_Thompson.25653	0	.	14923380	14923732	0	1	352	0
chr18	14936234	14956143	MeWo_Garraway.27422	0	+	14936234	14956143	0	3	93,198,528	0,15850,19381
chr18	14936265	14963738	HIT000046116	0	+	14936265	14963738	0	4	62,214,198,1384	0,15803,19350,26089
chr18	14949499	14950629	melanoma_Garraway_short_term_cultures.50993	0	.	14949499	14950629	0	1	1130	0
chr18	14951994	14953570	MDAMB231_Thompson.16608	0	.	14951994	14953570	0	1	1576	0
chr18	14952068	14952925	melanoma_Garraway_short_term_cultures.50996	0	.	14952068	14952925	0	1	857	0
chr18	14955542	14956278	melanoma_Garraway_short_term_cultures.50999	0	.	14955542	14956278	0	1	736	0
chr18	14955572	14956538	MDAMB231_Thompson.16611	0	.	14955572	14956538	0	1	966	0
chr18	14956905	14957229	melanoma_Garraway_short_term_cultures.51000	0	.	14956905	14957229	0	1	324	0
chr18	14963836	14966022	MeWo_Garraway.27430	0	.	14963836	14966022	0	1	2186	0
chr18	14964565	14966569	melanoma_Garraway_short_term_cultures.51007	0	.	14964565	14966569	0	1	2004	0
chr18	14977451	14988332	MIP101.51179	0	+	14977451	14988332	0	2	85,283	0,10598
chr18	14980705	14983234	HIT000046701	0	-	14980705	14983234	0	1	2529	0
chr18	14987190	14988332	MIP101.51180	0	.	14987190	14988332	0	1	1142	0
chr18	14987242	14988269	MCF7_Burge_Thompson.23947	0	.	14987242	14988269	0	1	1027	0
chr18	14987272	14987689	brain_AmbionMAQC.33017	0	.	14987272	14987689	0	1	417	0
chr18	14987343	14987919	prostate_carcinoma.73546	0	.	14987343	14987919	0	1	576	0
chr18	14988512	14989483	MIP101.51184	0	.	14988512	14989483	0	1	971	0
chr18	16769796	16770204	melanoma_Garraway_short_term_cultures.51010	0	.	16769796	16770204	0	1	408	0
chr18	16990621	16991295	BT474_Burge_Thompson.25657	0	.	16990621	16991295	0	1	674	0
chr18	17470745	17476974	REMC_LuminalBreast.74362	0	.	17470745	17476974	0	1	6229	0
chr18	17472754	17474773	REMC_BreastStem.37932	0	.	17472754	17474773	0	1	2019	0
chr18	17707305	17710734	REMC_MyoepithelialBreast.69171	0	.	17707305	17710734	0	1	3429	0
chr18	17707321	17708680	REMC_LuminalBreast.74441	0	.	17707321	17708680	0	1	1359	0
chr18	17707472	17708199	B_cells_Cheung.143960	0	.	17707472	17708199	0	1	727	0
chr18	17916212	17916843	BT20_Thompson.16240	0	.	17916212	17916843	0	1	631	0
chr18	17920827	17922543	BT20_Thompson.16244	0	.	17920827	17922543	0	1	1716	0
chr18	17998630	18002752	pHIT000118182	0	-	17998630	18002752	0	2	188,127	0,3995
chr18	18000855	18001378	kidney_Gilad.64586	0	.	18000855	18001378	0	1	523	0
chr18	18000855	18002406	liver_polyA+.100236	0	.	18000855	18002406	0	1	1551	0
chr18	18000859	18002119	heart_Burge.21950	0	-	18000859	18002119	0	3	408,232,117	0,671,1143
chr18	18038198	18039116	REMC_MyoepithelialBreast.69180	0	.	18038198	18039116	0	1	918	0
chr18	18048186	18049792	REMC_LuminalBreast.74445	0	.	18048186	18049792	0	1	1606	0
chr18	18049910	18050823	REMC_LuminalBreast.74446	0	.	18049910	18050823	0	1	913	0
chr18	18050249	18050846	REMC_BreastStem.37983	0	.	18050249	18050846	0	1	597	0
chr18	18052550	18053759	REMC_BreastStem.37984	0	.	18052550	18053759	0	1	1209	0
chr18	18052818	18053258	BT474_Burge_Thompson.25679	0	.	18052818	18053258	0	1	440	0
chr18	18061621	18064110	REMC_LuminalBreast.74451	0	.	18061621	18064110	0	1	2489	0
chr18	18065754	18066867	REMC_LuminalBreast.74452	0	.	18065754	18066867	0	1	1113	0
chr18	18104853	18105326	B_Cells_Pritchard.2376269	0	.	18104853	18105326	0	1	473	0
chr18	18181870	18182539	prostate_carcinoma.73695	0	.	18181870	18182539	0	1	669	0
chr18	18182118	18183236	CD4_Plagnol_resting.47203	0	.	18182118	18183236	0	1	1118	0
chr18	18182171	18182488	liver_polyA+.100265	0	.	18182171	18182488	0	1	317	0
chr18	18182525	18182870	A549_Myers.64232	0	.	18182525	18182870	0	1	345	0
chr18	18182539	18183070	liver_polyA+.100266	0	.	18182539	18183070	0	1	531	0
chr18	18183162	18183488	ovary_Raymond.187459	0	.	18183162	18183488	0	1	326	0
chr18	18286629	18286950	T47D_Burge_Thompson.22015	0	.	18286629	18286950	0	1	321	0
chr18	18288644	18289390	K562.33525	0	.	18288644	18289390	0	1	746	0
chr18	18290402	18290980	K562.33524	0	.	18290402	18290980	0	1	578	0
chr18	18290568	18290909	liver_polyA+.100271	0	.	18290568	18290909	0	1	341	0
chr18	18297790	18304633	khalil_915	0	.	18297790	18304633	0	4	93,231,1130,329	0,3444,5366,6514
chr18	18299237	18299662	REMC_MyoepithelialBreast.69186	0	.	18299237	18299662	0	1	425	0
chr18	18346508	18347439	REMC_MyoepithelialBreast.69191	0	.	18346508	18347439	0	1	931	0
chr18	18372343	18373328	REMC_MyoepithelialBreast.69192	0	.	18372343	18373328	0	1	985	0
chr18	18413287	18414152	B_cells_Cheung.143975	0	.	18413287	18414152	0	1	865	0
chr18	18413509	18414301	REMC_MyoepithelialBreast.69200	0	.	18413509	18414301	0	1	792	0
chr18	18422990	18423996	liver_polyA+.100287	0	+	18422990	18423996	0	2	111,762	0,244
chr18	18423533	18423979	B_cells_Cheung.143978	0	.	18423533	18423979	0	1	446	0
chr18	18427903	18428683	liver_polyA+.100289	0	.	18427903	18428683	0	1	780	0
chr18	18433075	18433538	liver_polyA+.100292	0	.	18433075	18433538	0	1	463	0
chr18	18443519	18444093	B_cells_Cheung.143984	0	.	18443519	18444093	0	1	574	0
chr18	18443523	18443896	kidney_Gilad.64610	0	.	18443523	18443896	0	1	373	0
chr18	18443535	18444155	REMC_MyoepithelialBreast.69203	0	.	18443535	18444155	0	1	620	0
chr18	18443553	18444082	prostate_carcinoma.73704	0	.	18443553	18444082	0	1	529	0
chr18	18446934	18447410	B_cells_Cheung.143985	0	.	18446934	18447410	0	1	476	0
chr18	18447057	18447501	liver_polyA+.100300	0	.	18447057	18447501	0	1	444	0
chr18	18501174	18501531	B_Cells_Pritchard.2377263	0	.	18501174	18501531	0	1	357	0
chr18	18501507	18501848	liver_polyA+.100330	0	.	18501507	18501848	0	1	341	0
chr18	18519769	18520207	liver_polyA+.100336	0	.	18519769	18520207	0	1	438	0
chr18	18530626	18531224	B_cells_Cheung.144002	0	.	18530626	18531224	0	1	598	0
chr18	18649501	18650817	liver_polyA+.100370	0	+	18649501	18650817	0	2	91,819	0,497
chr18	18649686	18650454	H1_polyA+.86730	0	.	18649686	18650454	0	1	768	0
chr18	18650342	18650652	B_cells_Cheung.144020	0	.	18650342	18650652	0	1	310	0
chr18	18697022	18699318	B_cells_Cheung.144043	0	.	18697022	18699318	0	1	2296	0
chr18	18697123	18698321	kidney_Gilad.64701	0	.	18697123	18698321	0	1	1198	0
chr18	18697123	18698499	liver_polyA+.100421	0	.	18697123	18698499	0	1	1376	0
chr18	18733988	18735151	HeLa_polyA+_Chen.27286	0	.	18733988	18735151	0	1	1163	0
chr18	18734519	18735068	prostate_normal.43513	0	.	18734519	18735068	0	1	549	0
chr18	18734745	18735056	H9_polyA+.33379	0	.	18734745	18735056	0	1	311	0
chr18	18961934	18962573	B_cells_Cheung.144118	0	.	18961934	18962573	0	1	639	0
chr18	18962035	18962543	A549_Myers.64237	0	.	18962035	18962543	0	1	508	0
chr18	18962965	18963903	B_Cells_Pritchard.2378619	0	.	18962965	18963903	0	1	938	0
chr18	18963566	18963928	B_cells_Cheung.144119	0	.	18963566	18963928	0	1	362	0
chr18	18966745	18967268	B_cells_Cheung.144123	0	.	18966745	18967268	0	1	523	0
chr18	18966821	18967260	H1_polyA+.86728	0	.	18966821	18967260	0	1	439	0
chr18	19096198	19098328	B_Cells_Pritchard.2378749	0	.	19096198	19098328	0	1	2130	0
chr18	19100182	19101436	REMC_LuminalBreast.74562	0	.	19100182	19101436	0	1	1254	0
chr18	19100272	19102055	B_cells_Cheung.144151	0	.	19100272	19102055	0	1	1783	0
chr18	19101680	19108694	REMC_LuminalBreast.74563	0	.	19101680	19108694	0	1	7014	0
chr18	19103884	19104946	REMC_MyoepithelialBreast.69255	0	.	19103884	19104946	0	1	1062	0
chr18	19106585	19107492	REMC_MyoepithelialBreast.69257	0	.	19106585	19107492	0	1	907	0
chr18	19108237	19110051	H1_polyA+.86769	0	.	19108237	19110051	0	1	1814	0
chr18	19108374	19109196	B_cells_Cheung.144157	0	.	19108374	19109196	0	1	822	0
chr18	19108626	19109116	prostate_carcinoma.73721	0	.	19108626	19109116	0	1	490	0
chr18	19109323	19109982	prostate_carcinoma.73722	0	.	19109323	19109982	0	1	659	0
chr18	19109335	19110064	B_Cells_Pritchard.2378773	0	.	19109335	19110064	0	1	729	0
chr18	19109612	19110103	REMC_LuminalBreast.74565	0	.	19109612	19110103	0	1	491	0
chr18	19110353	19115971	REMC_LuminalBreast.74566	0	.	19110353	19115971	0	1	5618	0
chr18	19110555	19112801	REMC_MyoepithelialBreast.69259	0	.	19110555	19112801	0	1	2246	0
chr18	19111428	19112894	H1_polyA+.86770	0	.	19111428	19112894	0	1	1466	0
chr18	19111703	19112229	B_cells_Cheung.144160	0	.	19111703	19112229	0	1	526	0
chr18	19111709	19112471	prostate_carcinoma.73723	0	.	19111709	19112471	0	1	762	0
chr18	19111885	19112894	MIP101.51357	0	.	19111885	19112894	0	1	1009	0
chr18	19112001	19113372	B_Cells_Pritchard.2378781	0	.	19112001	19113372	0	1	1371	0
chr18	19112867	19113974	REMC_MyoepithelialBreast.69260	0	.	19112867	19113974	0	1	1107	0
chr18	19114026	19114780	REMC_MyoepithelialBreast.69261	0	.	19114026	19114780	0	1	754	0
chr18	19114726	19117600	H1_polyA+.86772	0	.	19114726	19117600	0	1	2874	0
chr18	19115134	19117401	REMC_MyoepithelialBreast.69262	0	.	19115134	19117401	0	1	2267	0
chr18	19115364	19116230	B_cells_Cheung.144163	0	.	19115364	19116230	0	1	866	0
chr18	19115471	19126942	B_Cells_Pritchard.2378787	0	+	19115471	19126942	0	2	2163,1139	0,10332
chr18	19115595	19116184	MIP101.51359	0	.	19115595	19116184	0	1	589	0
chr18	19123981	19124700	REMC_LuminalBreast.74570	0	.	19123981	19124700	0	1	719	0
chr18	19123981	19126177	B_cells_Cheung.144167	0	.	19123981	19126177	0	1	2196	0
chr18	19124054	19124665	prostate_carcinoma.73763	0	.	19124054	19124665	0	1	611	0
chr18	19124060	19124389	BT474_Burge_Thompson.25694	0	.	19124060	19124389	0	1	329	0
chr18	19124878	19127044	REMC_LuminalBreast.74571	0	.	19124878	19127044	0	1	2166	0
chr18	19125137	19127123	REMC_MyoepithelialBreast.69265	0	.	19125137	19127123	0	1	1986	0
chr18	19128253	19128697	brain_AmbionMAQC.33075	0	.	19128253	19128697	0	1	444	0
chr18	19128404	19128802	MDAMB231_Thompson.16633	0	.	19128404	19128802	0	1	398	0
chr18	19284645	19285349	B_Cells_Pritchard.2379091	0	-	19284645	19285349	0	1	704	0
chr18	19332270	19333507	REMC_MyoepithelialBreast.69274	0	.	19332270	19333507	0	1	1237	0
chr18	19332607	19333495	REMC_LuminalBreast.74612	0	.	19332607	19333495	0	1	888	0
chr18	19334416	19334927	B_cells_Cheung.144221	0	.	19334416	19334927	0	1	511	0
chr18	19790215	19792980	REMC_LuminalBreast.74722	0	.	19790215	19792980	0	1	2765	0
chr18	19790819	19815746	pHIT000118203	0	-	19790819	19815746	0	2	99,219	0,24708
chr18	19797163	19798849	prostate_carcinoma.73816	0	.	19797163	19798849	0	1	1686	0
chr18	19803675	19804694	REMC_MyoepithelialBreast.69306	0	.	19803675	19804694	0	1	1019	0
chr18	19804123	19804621	B_cells_Cheung.144319	0	.	19804123	19804621	0	1	498	0
chr18	19804246	19805106	B_Cells_Pritchard.2379825	0	.	19804246	19805106	0	1	860	0
chr18	19812941	19813685	B_cells_Cheung.144328	0	.	19812941	19813685	0	1	744	0
chr18	19819463	19819905	B_cells_Cheung.144335	0	.	19819463	19819905	0	1	442	0
chr18	20235987	20236665	prostate_carcinoma.73952	0	.	20235987	20236665	0	1	678	0
chr18	20236017	20236684	melanoma_Garraway_short_term_cultures.51226	0	.	20236017	20236684	0	1	667	0
chr18	20236028	20236628	MIP101.51485	0	.	20236028	20236628	0	1	600	0
chr18	20569363	20570322	B_Cells_Pritchard.2381697	0	.	20569363	20570322	0	1	959	0
chr18	20569527	20570690	H1_polyA+.86959	0	.	20569527	20570690	0	1	1163	0
chr18	20761872	20762798	REMC_MyoepithelialBreast.69394	0	.	20761872	20762798	0	1	926	0
chr18	20762718	20763184	B_Cells_Pritchard.2382155	0	.	20762718	20763184	0	1	466	0
chr18	20764758	20765472	REMC_MyoepithelialBreast.69396	0	.	20764758	20765472	0	1	714	0
chr18	20876308	20877782	REMC_LuminalBreast.74795	0	.	20876308	20877782	0	1	1474	0
chr18	20886767	20889371	REMC_LuminalBreast.74796	0	.	20886767	20889371	0	1	2604	0
chr18	21954711	21955063	B_Cells_Pritchard.2385047	0	-	21954711	21955063	0	1	352	0
chr18	22039245	22039560	B_Cells_Pritchard.2385235	0	.	22039245	22039560	0	1	315	0
chr18	22257058	22258723	REMC_LuminalBreast.74874	0	.	22257058	22258723	0	1	1665	0
chr18	22268378	22270458	REMC_LuminalBreast.74878	0	.	22268378	22270458	0	1	2080	0
chr18	22276079	22276686	REMC_MyoepithelialBreast.69459	0	.	22276079	22276686	0	1	607	0
chr18	22581691	22582525	kidney_Gilad.64836	0	.	22581691	22582525	0	1	834	0
chr18	22581691	22582536	liver_polyA+.100654	0	.	22581691	22582536	0	1	845	0
chr18	22585085	22586091	kidney_Gilad.64843	0	.	22585085	22586091	0	1	1006	0
chr18	22585085	22586091	liver_polyA+.100661	0	.	22585085	22586091	0	1	1006	0
chr18	22615379	22660474	pHIT000030851	0	-	22615379	22660474	0	4	98,108,124,48	0,3306,22509,45047
chr18	22665510	22665830	BT474_Burge_Thompson.25765	0	.	22665510	22665830	0	1	320	0
chr18	22665510	22665826	HepG2_Caltech_ENCODE.27840	0	.	22665510	22665826	0	1	316	0
chr18	22665511	22665831	B_Cells_Pritchard.2387481	0	.	22665511	22665831	0	1	320	0
chr18	22665511	22665830	ZR751_Thompson.18279	0	.	22665511	22665830	0	1	319	0
chr18	22665512	22665837	BT20_Thompson.16287	0	.	22665512	22665837	0	1	325	0
chr18	22665516	22665830	T47D_Burge_Thompson.22082	0	.	22665516	22665830	0	1	314	0
chr18	22665521	22665837	liver_polyA+.100663	0	.	22665521	22665837	0	1	316	0
chr18	22665521	22665838	prostate_normal.43647	0	.	22665521	22665838	0	1	317	0
chr18	22665527	22665838	brain_AmbionMAQC.33124	0	.	22665527	22665838	0	1	311	0
chr18	23252727	23254398	XR_078848	0	-	23252727	23254398	0	2	526,808	0,863
chr18	23286282	23287456	pHIT000118220	0	-	23286282	23287456	0	2	129,619	0,555
chr18	23579397	23580150	H1_polyA+.87064	0	.	23579397	23580150	0	1	753	0
chr18	23581521	23582560	H1_polyA+.87065	0	.	23581521	23582560	0	1	1039	0
chr18	25481185	25483538	Rinn_00026309	0	+	25481185	25483538	0	2	170,182	0,2171
chr18	26381032	26381452	B_cells_Cheung.144617	0	.	26381032	26381452	0	1	420	0
chr18	26819727	26820103	A549_Myers.64411	0	.	26819727	26820103	0	1	376	0
chr18	26939646	26940518	H1_polyA+.87084	0	.	26939646	26940518	0	1	872	0
chr18	27011098	27011580	B_cells_Cheung.144665	0	.	27011098	27011580	0	1	482	0
chr18	27037245	27037635	B_cells_Cheung.144666	0	.	27037245	27037635	0	1	390	0
chr18	27050894	27051716	B_Cells_Pritchard.2394735	0	.	27050894	27051716	0	1	822	0
chr18	27051062	27051389	BT474_Burge_Thompson.25775	0	.	27051062	27051389	0	1	327	0
chr18	27101994	27102410	B_cells_Cheung.144668	0	.	27101994	27102410	0	1	416	0
chr18	27102515	27103165	liver_polyA+.100743	0	.	27102515	27103165	0	1	650	0
chr18	27102515	27103165	kidney_Gilad.64894	0	.	27102515	27103165	0	1	650	0
chr18	27123129	27123660	H1_polyA+.87147	0	.	27123129	27123660	0	1	531	0
chr18	27396081	27421610	pHIT000091919	0	+	27396081	27421610	0	4	112,99,100,88	0,21650,23681,25441
chr18	27447943	27448793	melanoma_Garraway_short_term_cultures.51295	0	.	27447943	27448793	0	1	850	0
chr18	27535982	27538034	prostate_carcinoma.74103	0	.	27535982	27538034	0	1	2052	0
chr18	27536082	27536937	prostate_normal.43695	0	.	27536082	27536937	0	1	855	0
chr18	27536235	27536824	B_cells_Cheung.144713	0	.	27536235	27536824	0	1	589	0
chr18	27536244	27536935	B_Cells_Pritchard.2395875	0	.	27536244	27536935	0	1	691	0
chr18	27558002	27558807	B_cells_Cheung.144722	0	.	27558002	27558807	0	1	805	0
chr18	27558510	27560428	REMC_LuminalBreast.74942	0	.	27558510	27560428	0	1	1918	0
chr18	27559668	27560415	prostate_normal.43696	0	.	27559668	27560415	0	1	747	0
chr18	27559676	27560492	liver_polyA+.100779	0	.	27559676	27560492	0	1	816	0
chr18	27559676	27560491	prostate_carcinoma.74107	0	.	27559676	27560491	0	1	815	0
chr18	27559722	27560506	BT474_Burge_Thompson.25779	0	.	27559722	27560506	0	1	784	0
chr18	27559868	27560351	K562.33594	0	.	27559868	27560351	0	1	483	0
chr18	27559971	27560358	pHIT000030867	0	-	27559971	27560358	0	1	387	0
chr18	27560037	27560482	B_cells_Cheung.144725	0	.	27560037	27560482	0	1	445	0
chr18	27628234	27628610	B_cells_Cheung.144727	0	.	27628234	27628610	0	1	376	0
chr18	27659026	27660322	REMC_MyoepithelialBreast.69524	0	.	27659026	27660322	0	1	1296	0
chr18	27659672	27660207	B_Cells_Pritchard.2396285	0	.	27659672	27660207	0	1	535	0
chr18	27966697	27980384	B_Cells_Pritchard.2396543	0	-	27966697	27980384	0	6	868,1140,829,419,225,259	0,1373,2564,3449,4091,13428
chr18	27967653	27971434	B_cells_Cheung.144845	0	.	27967653	27971434	0	1	3781	0
chr18	27967983	27968969	REMC_BreastStem.38120	0	.	27967983	27968969	0	1	986	0
chr18	27968083	27968734	H1_polyA+.87268	0	.	27968083	27968734	0	1	651	0
chr18	27968142	27968482	CD4_Snyder.55758	0	.	27968142	27968482	0	1	340	0
chr18	27979724	27983617	REMC_LuminalBreast.74985	0	.	27979724	27983617	0	1	3893	0
chr18	27996062	27999390	REMC_LuminalBreast.74991	0	.	27996062	27999390	0	1	3328	0
chr18	27996719	27998684	REMC_BreastStem.38130	0	.	27996719	27998684	0	1	1965	0
chr18	27997861	27999268	H1_polyA+.87269	0	.	27997861	27999268	0	1	1407	0
chr18	28017285	28020153	REMC_LuminalBreast.75000	0	.	28017285	28020153	0	1	2868	0
chr18	28055911	28057377	REMC_LuminalBreast.75021	0	.	28055911	28057377	0	1	1466	0
chr18	28056382	28057150	prostate_carcinoma.74160	0	.	28056382	28057150	0	1	768	0
chr18	28061168	28062036	REMC_LuminalBreast.75023	0	.	28061168	28062036	0	1	868	0
chr18	28079520	28084737	REMC_LuminalBreast.75028	0	.	28079520	28084737	0	1	5217	0
chr18	28084880	28087151	REMC_LuminalBreast.75029	0	.	28084880	28087151	0	1	2271	0
chr18	28094591	28096655	H1_polyA+.87289	0	.	28094591	28096655	0	1	2064	0
chr18	28619788	28620232	HepG2_Caltech_ENCODE.27907	0	.	28619788	28620232	0	1	444	0
chr18	30121373	30121873	B_cells_Cheung.144912	0	.	30121373	30121873	0	1	500	0
chr18	30135000	30135661	B_cells_Cheung.144923	0	.	30135000	30135661	0	1	661	0
chr18	30325384	30326167	BT474_Burge_Thompson.25812	0	.	30325384	30326167	0	1	783	0
chr18	30734924	30737885	REMC_LuminalBreast.75094	0	.	30734924	30737885	0	1	2961	0
chr18	30738586	30739840	REMC_LuminalBreast.75095	0	.	30738586	30739840	0	1	1254	0
chr18	30739088	30739845	REMC_BreastStem.38151	0	.	30739088	30739845	0	1	757	0
chr18	30748146	30748601	HepG2_Caltech_ENCODE.27921	0	.	30748146	30748601	0	1	455	0
chr18	30984024	30984949	REMC_LuminalBreast.75157	0	.	30984024	30984949	0	1	925	0
chr18	30984663	30987257	REMC_MyoepithelialBreast.69682	0	.	30984663	30987257	0	1	2594	0
chr18	30985036	30987278	REMC_BreastStem.38157	0	.	30985036	30987278	0	1	2242	0
chr18	30985113	30987272	REMC_LuminalBreast.75158	0	.	30985113	30987272	0	1	2159	0
chr18	30993055	30994342	REMC_LuminalBreast.75160	0	.	30993055	30994342	0	1	1287	0
chr18	31142305	31144115	liver_polyA+.101039	0	.	31142305	31144115	0	1	1810	0
chr18	31156497	31158628	REMC_LuminalBreast.75178	0	.	31156497	31158628	0	1	2131	0
chr18	31180168	31181699	B_Cells_Pritchard.2403017	0	.	31180168	31181699	0	1	1531	0
chr18	31180357	31182831	H1_polyA+.87400	0	.	31180357	31182831	0	1	2474	0
chr18	31180498	31182315	MIP101.51775	0	.	31180498	31182315	0	1	1817	0
chr18	31180543	31181836	REMC_BreastStem.38168	0	.	31180543	31181836	0	1	1293	0
chr18	31180553	31181440	B_cells_Cheung.145019	0	.	31180553	31181440	0	1	887	0
chr18	31181367	31182811	HepG2_Caltech_ENCODE.27949	0	.	31181367	31182811	0	1	1444	0
chr18	31237894	31240490	HIT000009708	0	-	31237894	31240490	0	1	2596	0
chr18	31271830	31277336	khalil_922	0	.	31271830	31277336	0	2	557,23	0,5483
chr18	31557900	31560775	REMC_LuminalBreast.75220	0	.	31557900	31560775	0	1	2875	0
chr18	31558785	31560128	REMC_BreastStem.38176	0	.	31558785	31560128	0	1	1343	0
chr18	31560881	31563792	REMC_LuminalBreast.75221	0	.	31560881	31563792	0	1	2911	0
chr18	31560945	31561563	REMC_BreastStem.38177	0	.	31560945	31561563	0	1	618	0
chr18	31621450	31623994	H1_polyA+.87450	0	.	31621450	31623994	0	1	2544	0
chr18	31660624	31661313	H1_polyA+.87458	0	.	31660624	31661313	0	1	689	0
chr18	31670722	31672920	H1_polyA+.87463	0	.	31670722	31672920	0	1	2198	0
chr18	31673027	31677411	H1_polyA+.87464	0	.	31673027	31677411	0	1	4384	0
chr18	31679472	31680477	H1_polyA+.87465	0	.	31679472	31680477	0	1	1005	0
chr18	31702888	31705822	H1_polyA+.87470	0	.	31702888	31705822	0	1	2934	0
chr18	31707248	31714334	H1_polyA+.87472	0	.	31707248	31714334	0	1	7086	0
chr18	31714842	31715854	H1_polyA+.87473	0	.	31714842	31715854	0	1	1012	0
chr18	31716799	31718848	H1_polyA+.87474	0	.	31716799	31718848	0	1	2049	0
chr18	31728268	31731617	H1_polyA+.87477	0	.	31728268	31731617	0	1	3349	0
chr18	31741052	31742294	H1_polyA+.87482	0	.	31741052	31742294	0	1	1242	0
chr18	31742519	31755903	H1_polyA+.87483	0	.	31742519	31755903	0	1	13384	0
chr18	31756114	31774180	H1_polyA+.87485	0	.	31756114	31774180	0	1	18066	0
chr18	31756114	31782435	H1_polyA+.87484	0	-	31756114	31782435	0	2	17097,3026	0,23295
chr18	31774965	31777831	H1_polyA+.87488	0	.	31774965	31777831	0	1	2866	0
chr18	31782594	31784539	H1_polyA+.87489	0	.	31782594	31784539	0	1	1945	0
chr18	31783412	31784239	H1_rRNA-depleted_UCSD_REMC.65067	0	.	31783412	31784239	0	1	827	0
chr18	31783634	31784366	H9_polyA+.33584	0	.	31783634	31784366	0	1	732	0
chr18	31821299	31821887	H1_polyA+.87509	0	.	31821299	31821887	0	1	588	0
chr18	31821408	31821858	prostate_carcinoma.74300	0	.	31821408	31821858	0	1	450	0
chr18	31821550	31821971	REMC_MyoepithelialBreast.69765	0	.	31821550	31821971	0	1	421	0
chr18	32009353	32009813	IMR90_UCSD_REMC.37689	0	-	32009353	32009813	0	1	460	0
chr18	32013436	32014509	MCF7_Burge_Thompson.24556	0	.	32013436	32014509	0	1	1073	0
chr18	32013444	32014657	prostate_carcinoma.75047	0	.	32013444	32014657	0	1	1213	0
chr18	32013445	32014356	prostate_normal.43904	0	+	32013445	32014356	0	2	362,334	0,577
chr18	32013445	32014478	prostate_normal.43902	0	.	32013445	32014478	0	1	1033	0
chr18	32013445	32014517	CD4_Plagnol_activated.48764	0	.	32013445	32014517	0	1	1072	0
chr18	32013463	32014498	brain_AmbionMAQC.33237	0	.	32013463	32014498	0	1	1035	0
chr18	32015318	32017345	REMC_MyoepithelialBreast.69795	0	.	32015318	32017345	0	1	2027	0
chr18	32015908	32017526	melanoma_Garraway_short_term_cultures.51439	0	.	32015908	32017526	0	1	1618	0
chr18	32019144	32020283	REMC_BreastStem.38202	0	.	32019144	32020283	0	1	1139	0
chr18	32104553	32106137	HeLa_polyA+_Chen.27440	0	.	32104553	32106137	0	1	1584	0
chr18	32104566	32107061	REMC_LuminalBreast.75324	0	.	32104566	32107061	0	1	2495	0
chr18	32104580	32106183	ZR751_Thompson.18354	0	.	32104580	32106183	0	1	1603	0
chr18	32104585	32106090	HepG2_Caltech_ENCODE.27990	0	.	32104585	32106090	0	1	1505	0
chr18	32104596	32105272	B_cells_Cheung.145165	0	.	32104596	32105272	0	1	676	0
chr18	32104605	32106176	MIP101.52125	0	.	32104605	32106176	0	1	1571	0
chr18	32104658	32106042	MCF10A_Thompson.16205	0	.	32104658	32106042	0	1	1384	0
chr18	32104675	32106153	MDAMB231_Thompson.16788	0	.	32104675	32106153	0	1	1478	0
chr18	32104676	32106165	MeWo_Garraway.27694	0	.	32104676	32106165	0	1	1489	0
chr18	32104688	32106094	REMC_MyoepithelialBreast.69804	0	.	32104688	32106094	0	1	1406	0
chr18	32104690	32119730	B_Cells_Pritchard.2405407	0	+	32104690	32119730	0	2	1516,123	0,14917
chr18	32107252	32109028	REMC_LuminalBreast.75325	0	.	32107252	32109028	0	1	1776	0
chr18	32107632	32109113	HeLa_polyA+_Chen.27442	0	.	32107632	32109113	0	1	1481	0
chr18	33067146	33067915	REMC_MyoepithelialBreast.69956	0	.	33067146	33067915	0	1	769	0
chr18	33067985	33070312	MIP101.51901	0	.	33067985	33070312	0	1	2327	0
chr18	33068062	33070203	HIT000070762	0	-	33068062	33070203	0	1	2141	0
chr18	33068987	33071074	brain_AmbionMAQC.33420	0	.	33068987	33071074	0	1	2087	0
chr18	33069094	33071102	H1_polyA+.87635	0	.	33069094	33071102	0	1	2008	0
chr18	33069138	33070249	prostate_carcinoma.74366	0	.	33069138	33070249	0	1	1111	0
chr18	33069302	33071146	REMC_MyoepithelialBreast.69958	0	.	33069302	33071146	0	1	1844	0
chr18	33070323	33071170	prostate_carcinoma.74367	0	.	33070323	33071170	0	1	847	0
chr18	33070466	33071131	MIP101.51902	0	.	33070466	33071131	0	1	665	0
chr18	33071842	33073890	MIP101.51903	0	.	33071842	33073890	0	1	2048	0
chr18	33072831	33073511	REMC_MyoepithelialBreast.69960	0	.	33072831	33073511	0	1	680	0
chr18	35039708	35040580	H1_polyA+.87650	0	.	35039708	35040580	0	1	872	0
chr18	35074119	35133619	pHIT000030914	0	+	35074119	35133619	0	6	39,81,87,98,97,237	0,36977,45302,50392,57292,59263
chr18	35075119	35076489	MIP101.51913	0	.	35075119	35076489	0	1	1370	0
chr18	35085519	35086824	MIP101.51916	0	.	35085519	35086824	0	1	1305	0
chr18	35109645	35132799	MIP101.51918	0	-	35109645	35132799	0	2	4953,380	0,22774
chr18	35179622	35180341	melanoma_Garraway_short_term_cultures.51488	0	.	35179622	35180341	0	1	719	0
chr18	35182380	35189619	H1_polyA+.87667	0	.	35182380	35189619	0	1	7239	0
chr18	35186698	35187061	H1_rRNA-depleted_UCSD_REMC.65221	0	.	35186698	35187061	0	1	363	0
chr18	35193244	35193566	MIP101.51946	0	.	35193244	35193566	0	1	322	0
chr18	35199623	35213391	H1_polyA+.87676	0	.	35199623	35213391	0	1	13768	0
chr18	35203411	35204298	MIP101.51951	0	.	35203411	35204298	0	1	887	0
chr18	35216760	35221995	H1_polyA+.87678	0	.	35216760	35221995	0	1	5235	0
chr18	35222295	35222641	MIP101.51961	0	.	35222295	35222641	0	1	346	0
chr18	35297277	35299935	MIP101.51971	0	.	35297277	35299935	0	1	2658	0
chr18	35304528	35306408	MIP101.51974	0	.	35304528	35306408	0	1	1880	0
chr18	35327530	35347998	MIP101.51984	0	+	35327530	35347998	0	2	77,2458	0,18010
chr18	35345423	35345986	BT474_Burge_Thompson.25873	0	.	35345423	35345986	0	1	563	0
chr18	35357360	35358336	MIP101.51991	0	.	35357360	35358336	0	1	976	0
chr18	35363065	35363725	HeLa_polyA-_Chen.14819	0	.	35363065	35363725	0	1	660	0
chr18	35363087	35363781	H9_polyA-_Chen.10811	0	.	35363087	35363781	0	1	694	0
chr18	35363153	35363718	MIP101.51993	0	.	35363153	35363718	0	1	565	0
chr18	35491332	35494292	MIP101.52015	0	.	35491332	35494292	0	1	2960	0
chr18	35507034	35510393	MIP101.52023	0	.	35507034	35510393	0	1	3359	0
chr18	35515221	35517888	MIP101.52025	0	.	35515221	35517888	0	1	2667	0
chr18	35541809	35543055	MIP101.52034	0	.	35541809	35543055	0	1	1246	0
chr18	35543903	35545110	MIP101.52037	0	.	35543903	35545110	0	1	1207	0
chr18	35546184	35549625	MIP101.52039	0	.	35546184	35549625	0	1	3441	0
chr18	35568012	35570082	MIP101.52045	0	.	35568012	35570082	0	1	2070	0
chr18	35569437	35570895	HeLa_polyA-_Chen.14822	0	.	35569437	35570895	0	1	1458	0
chr18	35571117	35572526	HeLa_polyA-_Chen.14823	0	.	35571117	35572526	0	1	1409	0
chr18	35571797	35572448	H9_polyA-_Chen.10812	0	.	35571797	35572448	0	1	651	0
chr18	35582301	35584673	MIP101.52050	0	.	35582301	35584673	0	1	2372	0
chr18	35592845	35628807	khalil_929	0	.	35592845	35628807	0	8	153,195,302,399,640,37,1206,459	0,11176,12142,20911,26069,30042,34228,35503
chr18	35595215	35595522	H1_rRNA-depleted_UCSD_REMC.65292	0	.	35595215	35595522	0	1	307	0
chr18	35613228	35618989	MIP101.52060	0	.	35613228	35618989	0	1	5761	0
chr18	35655098	35656197	MIP101.52069	0	.	35655098	35656197	0	1	1099	0
chr18	35663353	35710412	pHIT000118272	0	+	35663353	35710412	0	4	70,88,116,63	0,12433,25625,46996
chr18	35674278	35675886	H1_polyA+.87761	0	.	35674278	35675886	0	1	1608	0
chr18	35675135	35710357	Rinn_00026204	0	-	35675135	35710357	0	3	699,107,93	0,20969,35129
chr18	35675563	35748129	pHIT000118273	0	+	35675563	35748129	0	2	311,122	0,72444
chr18	36809713	36810449	B_Cells_Pritchard.2414901	0	.	36809713	36810449	0	1	736	0
chr18	37324701	37325145	NEC_from_H9.56438	0	.	37324701	37325145	0	1	444	0
chr18	37332114	37334237	prostate_carcinoma.74380	0	.	37332114	37334237	0	1	2123	0
chr18	37396241	37403753	H1_polyA+.87790	0	.	37396241	37403753	0	1	7512	0
chr18	37406502	37407947	H1_polyA+.87793	0	.	37406502	37407947	0	1	1445	0
chr18	37408014	37410786	H1_polyA+.87794	0	.	37408014	37410786	0	1	2772	0
chr18	37412875	37415857	H1_polyA+.87796	0	.	37412875	37415857	0	1	2982	0
chr18	37418807	37430081	H1_polyA+.87798	0	.	37418807	37430081	0	1	11274	0
chr18	37434561	37436792	H1_polyA+.87802	0	.	37434561	37436792	0	1	2231	0
chr18	37442298	37452426	H1_polyA+.87804	0	.	37442298	37452426	0	1	10128	0
chr18	37442889	37443349	H1_rRNA-depleted_UCSD_REMC.65347	0	.	37442889	37443349	0	1	460	0
chr18	37915762	37919105	NEC_from_H9.56468	0	-	37915762	37919105	0	2	853,559	0,2784
chr18	37917943	37918931	MeWo_Garraway.27656	0	.	37917943	37918931	0	1	988	0
chr18	37918365	37919212	K562.33724	0	.	37918365	37919212	0	1	847	0
chr18	37918404	37919241	B_Cells_Pritchard.2416779	0	.	37918404	37919241	0	1	837	0
chr18	37918440	37919159	liver_polyA+.101209	0	.	37918440	37919159	0	1	719	0
chr18	37918442	37918928	kidney_Gilad.65172	0	.	37918442	37918928	0	1	486	0
chr18	37918454	37920620	ZR751_Thompson.18381	0	.	37918454	37920620	0	1	2166	0
chr18	37918455	37919044	T47D_Burge_Thompson.22180	0	.	37918455	37919044	0	1	589	0
chr18	37918474	37918984	HeLa_polyA+_Chen.27470	0	.	37918474	37918984	0	1	510	0
chr18	37918480	37919116	MDAMB231_Thompson.16806	0	.	37918480	37919116	0	1	636	0
chr18	37918482	37919172	brain_AmbionMAQC.33280	0	.	37918482	37919172	0	1	690	0
chr18	37918500	37918946	A549_Myers.64610	0	.	37918500	37918946	0	1	446	0
chr18	37918561	37919800	prostate_normal.43877	0	.	37918561	37919800	0	1	1239	0
chr18	37918616	37919175	H9_polyA+.33687	0	.	37918616	37919175	0	1	559	0
chr18	37919306	37921725	CD4_Plagnol_activated.48799	0	.	37919306	37921725	0	1	2419	0
chr18	37919327	37921775	B_cells_Cheung.145380	0	.	37919327	37921775	0	1	2448	0
chr18	37919362	37921766	B_Cells_Pritchard.2416781	0	.	37919362	37921766	0	1	2404	0
chr18	37919363	37921780	brain_AmbionMAQC.33281	0	.	37919363	37921780	0	1	2417	0
chr18	37919363	37921709	MCF10A_Thompson.16221	0	.	37919363	37921709	0	1	2346	0
chr18	37919609	37921679	H9_polyA+.33688	0	.	37919609	37921679	0	1	2070	0
chr18	37919628	37921762	HeLa_polyA+_Chen.27471	0	.	37919628	37921762	0	1	2134	0
chr18	37920048	37921770	CD4_Plagnol_resting.47518	0	.	37920048	37921770	0	1	1722	0
chr18	37920672	37921585	T47D_Burge_Thompson.22182	0	.	37920672	37921585	0	1	913	0
chr18	37920693	37921679	ZR751_Thompson.18380	0	.	37920693	37921679	0	1	986	0
chr18	37920931	37921619	K562.33726	0	.	37920931	37921619	0	1	688	0
chr18	37920946	37921706	MDAMB231_Thompson.16809	0	.	37920946	37921706	0	1	760	0
chr18	37922106	37922689	B_cells_Cheung.145381	0	.	37922106	37922689	0	1	583	0
chr18	37975166	37975626	B_cells_Cheung.145392	0	.	37975166	37975626	0	1	460	0
chr18	38012127	38012607	B_cells_Cheung.145398	0	.	38012127	38012607	0	1	480	0
chr18	38118357	38118900	B_cells_Cheung.145418	0	.	38118357	38118900	0	1	543	0
chr18	38121789	38122780	REMC_MyoepithelialBreast.69976	0	.	38121789	38122780	0	1	991	0
chr18	38138620	38139357	liver_polyA+.101247	0	.	38138620	38139357	0	1	737	0
chr18	38149803	38150288	B_cells_Cheung.145427	0	.	38149803	38150288	0	1	485	0
chr18	40157387	40365660	HIT000099378	0	-	40157387	40365660	0	5	1180,277,236,144,242	0,1727,2822,194800,208031
chr18	40157396	40365660	Rinn_00026205	0	-	40157396	40365660	0	5	1171,278,237,145,243	0,1717,2812,194790,208021
chr18	40157398	40365660	ENST00000511428	0	-	40157398	40365660	0	5	1169,277,236,144,242	0,1716,2811,194789,208020
chr18	40506614	40507748	prostate_carcinoma.74406	0	.	40506614	40507748	0	1	1134	0
chr18	40510877	40513680	HIT000092334	0	-	40510877	40513680	0	2	1975,102	0,2701
chr18	40511048	40513896	H1_polyA+.87830	0	-	40511048	40513896	0	2	1804,933	0,1915
chr18	40922416	40923405	REMC_BreastStem.38257	0	.	40922416	40923405	0	1	989	0
chr18	41520771	41523949	B_cells_Cheung.145722	0	.	41520771	41523949	0	1	3178	0
chr18	41520954	41523807	B_Cells_Pritchard.2425233	0	.	41520954	41523807	0	1	2853	0
chr18	41536436	41537282	B_Cells_Pritchard.2425243	0	.	41536436	41537282	0	1	846	0
chr18	41536986	41537338	B_cells_Cheung.145731	0	.	41536986	41537338	0	1	352	0
chr18	41537462	41538170	B_Cells_Pritchard.2425241	0	.	41537462	41538170	0	1	708	0
chr18	41538214	41538673	B_cells_Cheung.145733	0	.	41538214	41538673	0	1	459	0
chr18	41538387	41539033	B_Cells_Pritchard.2425245	0	.	41538387	41539033	0	1	646	0
chr18	41544072	41545450	B_Cells_Pritchard.2425269	0	.	41544072	41545450	0	1	1378	0
chr18	41547347	41553239	B_cells_Cheung.145739	0	.	41547347	41553239	0	1	5892	0
chr18	41547347	41556718	B_cells_Cheung.145738	0	+	41547347	41556718	0	2	3582,1533	0,7838
chr18	41547730	41553568	B_Cells_Pritchard.2425297	0	.	41547730	41553568	0	1	5838	0
chr18	41600822	41602116	REMC_LuminalBreast.75364	0	.	41600822	41602116	0	1	1294	0
chr18	41600828	41601931	H1_polyA+.87846	0	.	41600828	41601931	0	1	1103	0
chr18	41601172	41601620	B_Cells_Pritchard.2425385	0	.	41601172	41601620	0	1	448	0
chr18	41603020	41604578	prostate_normal.43956	0	.	41603020	41604578	0	1	1558	0
chr18	41605995	41606382	prostate_normal.43957	0	.	41605995	41606382	0	1	387	0
chr18	41605995	41606392	prostate_carcinoma.74543	0	.	41605995	41606392	0	1	397	0
chr18	41623904	41625469	REMC_LuminalBreast.75371	0	.	41623904	41625469	0	1	1565	0
chr18	41641641	41643534	REMC_LuminalBreast.75706	0	.	41641641	41643534	0	1	1893	0
chr18	41649015	41649893	REMC_LuminalBreast.75709	0	.	41649015	41649893	0	1	878	0
chr18	41804878	41806638	REMC_LuminalBreast.75755	0	.	41804878	41806638	0	1	1760	0
chr18	41810893	41811847	B_Cells_Pritchard.2425517	0	.	41810893	41811847	0	1	954	0
chr18	41812100	41813233	B_cells_Cheung.145805	0	.	41812100	41813233	0	1	1133	0
chr18	41813892	41815518	B_Cells_Pritchard.2425527	0	.	41813892	41815518	0	1	1626	0
chr18	41814768	41815368	MIP101.52179	0	.	41814768	41815368	0	1	600	0
chr18	41908316	41908689	B_cells_Cheung.145950	0	.	41908316	41908689	0	1	373	0
chr18	41911674	41912417	REMC_MyoepithelialBreast.69996	0	.	41911674	41912417	0	1	743	0
chr18	41913024	41915094	REMC_MyoepithelialBreast.69997	0	.	41913024	41915094	0	1	2070	0
chr18	41913052	41914922	B_cells_Cheung.145955	0	.	41913052	41914922	0	1	1870	0
chr18	41963546	41964537	B_cells_Cheung.146044	0	.	41963546	41964537	0	1	991	0
chr18	41966805	41967258	B_cells_Cheung.146049	0	.	41966805	41967258	0	1	453	0
chr18	41968746	41970214	B_cells_Cheung.146051	0	.	41968746	41970214	0	1	1468	0
chr18	41969218	41970274	MIP101.52201	0	.	41969218	41970274	0	1	1056	0
chr18	41969224	41970089	H1_polyA+.87910	0	.	41969224	41970089	0	1	865	0
chr18	41990538	41991903	MIP101.52208	0	.	41990538	41991903	0	1	1365	0
chr18	42001726	42002436	MIP101.52135	0	.	42001726	42002436	0	1	710	0
chr18	42102344	42109227	B_cells_Cheung.146104	0	.	42102344	42109227	0	1	6883	0
chr18	42102832	42108277	REMC_BreastStem.38289	0	.	42102832	42108277	0	1	5445	0
chr18	42104403	42109045	B_Cells_Pritchard.2426041	0	.	42104403	42109045	0	1	4642	0
chr18	42105385	42108701	H1_polyA+.87957	0	.	42105385	42108701	0	1	3316	0
chr18	42105462	42107008	CD4_Plagnol_resting.47576	0	.	42105462	42107008	0	1	1546	0
chr18	42109238	42111181	H1_polyA+.87958	0	.	42109238	42111181	0	1	1943	0
chr18	42110559	42111053	B_cells_Cheung.146106	0	.	42110559	42111053	0	1	494	0
chr18	42113593	42114546	B_cells_Cheung.146109	0	.	42113593	42114546	0	1	953	0
chr18	42115211	42118765	H1_polyA+.87961	0	.	42115211	42118765	0	1	3554	0
chr18	42116912	42118894	REMC_BreastStem.38293	0	.	42116912	42118894	0	1	1982	0
chr18	42117949	42118486	B_cells_Cheung.146112	0	.	42117949	42118486	0	1	537	0
chr18	42122254	42125635	REMC_BreastStem.38295	0	.	42122254	42125635	0	1	3381	0
chr18	42123422	42125701	H1_polyA+.87964	0	.	42123422	42125701	0	1	2279	0
chr18	42124275	42125589	CD4_Plagnol_activated.48931	0	.	42124275	42125589	0	1	1314	0
chr18	42124463	42125586	prostate_carcinoma.74560	0	.	42124463	42125586	0	1	1123	0
chr18	42124466	42125079	CD4_Plagnol_resting.47584	0	.	42124466	42125079	0	1	613	0
chr18	42124594	42125166	B_cells_Cheung.146120	0	.	42124594	42125166	0	1	572	0
chr18	42125119	42125631	brain_AmbionMAQC.33337	0	.	42125119	42125631	0	1	512	0
chr18	42125240	42125696	B_cells_Cheung.146121	0	.	42125240	42125696	0	1	456	0
chr18	42127725	42128269	B_cells_Cheung.146122	0	.	42127725	42128269	0	1	544	0
chr18	42130139	42132786	REMC_MyoepithelialBreast.70033	0	.	42130139	42132786	0	1	2647	0
chr18	42137905	42138459	BT474_Burge_Thompson.25912	0	.	42137905	42138459	0	1	554	0
chr18	42139070	42139960	REMC_MyoepithelialBreast.70037	0	.	42139070	42139960	0	1	890	0
chr18	42151485	42152423	REMC_MyoepithelialBreast.70039	0	.	42151485	42152423	0	1	938	0
chr18	42153456	42155600	REMC_LuminalBreast.75444	0	.	42153456	42155600	0	1	2144	0
chr18	42301514	42302064	B_Cells_Pritchard.2426733	0	.	42301514	42302064	0	1	550	0
chr18	42497952	42499958	brain_AmbionMAQC.33350	0	.	42497952	42499958	0	1	2006	0
chr18	42501759	42503913	brain_AmbionMAQC.33353	0	.	42501759	42503913	0	1	2154	0
chr18	42501782	42504250	HIT000015366	0	-	42501782	42504250	0	1	2468	0
chr18	42501782	42510827	HIT000011369	0	-	42501782	42510827	0	2	1102,939	0,8106
chr18	42501826	42503228	prostate_carcinoma.74585	0	.	42501826	42503228	0	1	1402	0
chr18	42501851	42503748	melanoma_Garraway_short_term_cultures.51570	0	.	42501851	42503748	0	1	1897	0
chr18	42501914	42502526	B_Cells_Pritchard.2427615	0	.	42501914	42502526	0	1	612	0
chr18	42502009	42503388	prostate_normal.44003	0	.	42502009	42503388	0	1	1379	0
chr18	42502487	42503048	H1_polyA+.87983	0	.	42502487	42503048	0	1	561	0
chr18	42502589	42506099	HIT000019900	0	-	42502589	42506099	0	1	3510	0
chr18	42502688	42503830	B_Cells_Pritchard.2427617	0	.	42502688	42503830	0	1	1142	0
chr18	42503133	42503889	H1_polyA+.87984	0	.	42503133	42503889	0	1	756	0
chr18	42503228	42503757	prostate_carcinoma.74587	0	.	42503228	42503757	0	1	529	0
chr18	42593684	42598369	HIT000047119	0	-	42593684	42598369	0	1	4685	0
chr18	42595624	42597016	H1_polyA+.87992	0	.	42595624	42597016	0	1	1392	0
chr18	42602195	42603722	brain_AmbionMAQC.33438	0	.	42602195	42603722	0	1	1527	0
chr18	42602732	42603717	H1_polyA+.87993	0	.	42602732	42603717	0	1	985	0
chr18	42604668	42605591	H1_polyA+.87994	0	.	42604668	42605591	0	1	923	0
chr18	42613912	42614345	brain_AmbionMAQC.33440	0	.	42613912	42614345	0	1	433	0
chr18	42617153	42617981	B_cells_Cheung.146157	0	.	42617153	42617981	0	1	828	0
chr18	42617191	42617979	MIP101.52156	0	.	42617191	42617979	0	1	788	0
chr18	42617235	42618006	H1_polyA+.87995	0	.	42617235	42618006	0	1	771	0
chr18	42617235	42617946	B_Cells_Pritchard.2427959	0	.	42617235	42617946	0	1	711	0
chr18	42618192	42618912	B_Cells_Pritchard.2427961	0	.	42618192	42618912	0	1	720	0
chr18	42618480	42618854	H1_polyA+.87996	0	.	42618480	42618854	0	1	374	0
chr18	42620061	42620573	B_cells_Cheung.146160	0	.	42620061	42620573	0	1	512	0
chr18	42620094	42620870	HepG2_Caltech_ENCODE.28069	0	.	42620094	42620870	0	1	776	0
chr18	42620177	42620576	H1_polyA+.87998	0	.	42620177	42620576	0	1	399	0
chr18	42622800	42631170	H1_polyA+.88159	0	.	42622800	42631170	0	1	8370	0
chr18	42625535	42628506	REMC_MyoepithelialBreast.70054	0	.	42625535	42628506	0	1	2971	0
chr18	42628278	42629941	B_Cells_Pritchard.2427989	0	.	42628278	42629941	0	1	1663	0
chr18	42628557	42629171	prostate_carcinoma.74627	0	.	42628557	42629171	0	1	614	0
chr18	42628598	42629090	HeLa_polyA+_Chen.27543	0	.	42628598	42629090	0	1	492	0
chr18	42628618	42634575	REMC_LuminalBreast.75453	0	.	42628618	42634575	0	1	5957	0
chr18	42628637	42629977	REMC_MyoepithelialBreast.70055	0	.	42628637	42629977	0	1	1340	0
chr18	42633352	42633746	B_cells_Cheung.146172	0	.	42633352	42633746	0	1	394	0
chr18	42633771	42635101	REMC_MyoepithelialBreast.70058	0	.	42633771	42635101	0	1	1330	0
chr18	42634660	42635899	REMC_LuminalBreast.75454	0	.	42634660	42635899	0	1	1239	0
chr18	42634687	42635065	B_cells_Cheung.146174	0	.	42634687	42635065	0	1	378	0
chr18	42634694	42635096	B_Cells_Pritchard.2428015	0	.	42634694	42635096	0	1	402	0
chr18	42634716	42635091	MIP101.52165	0	.	42634716	42635091	0	1	375	0
chr18	42883819	42886281	ZR751_Thompson.18420	0	.	42883819	42886281	0	1	2462	0
chr18	42884017	42886438	HeLa_polyA+_Chen.27560	0	.	42884017	42886438	0	1	2421	0
chr18	42884030	42885570	melanoma_Garraway_short_term_cultures.51600	0	.	42884030	42885570	0	1	1540	0
chr18	42884189	42884534	H9_polyA+.33759	0	.	42884189	42884534	0	1	345	0
chr18	42884265	42885362	brain_AmbionMAQC.33392	0	.	42884265	42885362	0	1	1097	0
chr18	43043914	43063518	H1_polyA+.88034	0	+	43043914	43063518	0	3	773,51,764	0,1431,18840
chr18	43477329	43477772	BT474_Burge_Thompson.25950	0	.	43477329	43477772	0	1	443	0
chr18	43574681	43575795	MIP101.52213	0	.	43574681	43575795	0	1	1114	0
chr18	43575479	43575991	B_Cells_Pritchard.2430215	0	+	43575479	43575991	0	1	512	0
chr18	43575904	43590061	pHIT000118322	0	+	43575904	43590061	0	3	159,105,96	0,1843,14061
chr18	43578033	43579323	REMC_LuminalBreast.75479	0	.	43578033	43579323	0	1	1290	0
chr18	43589033	43591762	REMC_LuminalBreast.75480	0	.	43589033	43591762	0	1	2729	0
chr18	43589172	43591580	B_cells_Cheung.146281	0	.	43589172	43591580	0	1	2408	0
chr18	43589321	43590340	melanoma_Garraway_short_term_cultures.51611	0	.	43589321	43590340	0	1	1019	0
chr18	43589330	43591340	HepG2_Caltech_ENCODE.28094	0	.	43589330	43591340	0	1	2010	0
chr18	43589331	43591021	prostate_carcinoma.74697	0	.	43589331	43591021	0	1	1690	0
chr18	43589431	43591000	MIP101.52212	0	.	43589431	43591000	0	1	1569	0
chr18	43589465	43590473	A549_Myers.64720	0	.	43589465	43590473	0	1	1008	0
chr18	43589795	43608139	H1_polyA+.88074	0	-	43589795	43608139	0	2	77,4935	0,13409
chr18	43591865	43593822	REMC_LuminalBreast.75481	0	.	43591865	43593822	0	1	1957	0
chr18	43592411	43593333	REMC_MyoepithelialBreast.70107	0	.	43592411	43593333	0	1	922	0
chr18	43594009	43597065	HepG2_Caltech_ENCODE.28097	0	.	43594009	43597065	0	1	3056	0
chr18	43600367	43608139	H1_polyA+.88073	0	.	43600367	43608139	0	1	7772	0
chr18	43600789	43607916	B_cells_Cheung.146291	0	.	43600789	43607916	0	1	7127	0
chr18	43601330	43608128	B_Cells_Pritchard.2430195	0	+	43601330	43608128	0	1	6798	0
chr18	43602662	43607934	HeLa_polyA+_Chen.27592	0	.	43602662	43607934	0	1	5272	0
chr18	43603025	43606931	REMC_MyoepithelialBreast.70104	0	.	43603025	43606931	0	1	3906	0
chr18	43604375	43607889	MIP101.52247	0	.	43604375	43607889	0	1	3514	0
chr18	43605188	43607176	prostate_carcinoma.74706	0	.	43605188	43607176	0	1	1988	0
chr18	43605294	43607941	H9_polyA+.33775	0	.	43605294	43607941	0	1	2647	0
chr18	43605338	43607352	melanoma_Garraway_short_term_cultures.51617	0	.	43605338	43607352	0	1	2014	0
chr18	43605532	43607929	HepG2_Caltech_ENCODE.28100	0	.	43605532	43607929	0	1	2397	0
chr18	43605648	43607245	CD4_Plagnol_resting.47630	0	.	43605648	43607245	0	1	1597	0
chr18	43606358	43607415	prostate_normal.44059	0	.	43606358	43607415	0	1	1057	0
chr18	43606717	43607293	CD4_Snyder.56118	0	.	43606717	43607293	0	1	576	0
chr18	43606931	43607938	REMC_MyoepithelialBreast.70113	0	.	43606931	43607938	0	1	1007	0
chr18	43608402	43608739	B_Cells_Pritchard.2430181	0	.	43608402	43608739	0	1	337	0
chr18	43611208	43611796	H9_polyA+.33776	0	.	43611208	43611796	0	1	588	0
chr18	43611255	43611802	prostate_carcinoma.74709	0	.	43611255	43611802	0	1	547	0
chr18	43712541	43712939	prostate_carcinoma.74679	0	.	43712541	43712939	0	1	398	0
chr18	43718678	43719234	prostate_carcinoma.74680	0	.	43718678	43719234	0	1	556	0
chr18	43770664	43772482	Rinn_00026519	0	-	43770664	43772482	0	2	318,144	0,1674
chr18	43781617	43783373	H1_polyA+.88067	0	.	43781617	43783373	0	1	1756	0
chr18	43786845	43787374	H1_polyA+.88068	0	.	43786845	43787374	0	1	529	0
chr18	43786961	43787293	B_Cells_Pritchard.2430663	0	.	43786961	43787293	0	1	332	0
chr18	43787873	43788413	A549_Myers.64730	0	.	43787873	43788413	0	1	540	0
chr18	43788616	43789008	A549_Myers.64731	0	.	43788616	43789008	0	1	392	0
chr18	43802620	43803500	REMC_MyoepithelialBreast.70116	0	.	43802620	43803500	0	1	880	0
chr18	44189952	44190334	testes_Burge.40422	0	.	44189952	44190334	0	1	382	0
chr18	44190536	44191192	A549_Myers.64738	0	.	44190536	44191192	0	1	656	0
chr18	44226959	44227283	A549_Myers.64739	0	.	44226959	44227283	0	1	324	0
chr18	44258984	44259342	H1_polyA+.88071	0	.	44258984	44259342	0	1	358	0
chr18	44648260	44649372	REMC_LuminalBreast.75544	0	.	44648260	44649372	0	1	1112	0
chr18	44656348	44656659	A549_Myers.64796	0	.	44656348	44656659	0	1	311	0
chr18	44659720	44661475	REMC_MyoepithelialBreast.70248	0	.	44659720	44661475	0	1	1755	0
chr18	44664528	44665674	REMC_MyoepithelialBreast.70251	0	.	44664528	44665674	0	1	1146	0
chr18	44665222	44667655	REMC_LuminalBreast.75552	0	.	44665222	44667655	0	1	2433	0
chr18	44667948	44669915	REMC_MyoepithelialBreast.70253	0	.	44667948	44669915	0	1	1967	0
chr18	44668595	44669133	B_Cells_Pritchard.2433253	0	.	44668595	44669133	0	1	538	0
chr18	44669969	44670285	B_Cells_Pritchard.2433259	0	.	44669969	44670285	0	1	316	0
chr18	44669970	44671790	REMC_MyoepithelialBreast.70254	0	.	44669970	44671790	0	1	1820	0
chr18	44670933	44671858	REMC_LuminalBreast.75553	0	.	44670933	44671858	0	1	925	0
chr18	44672555	44673162	REMC_MyoepithelialBreast.70255	0	.	44672555	44673162	0	1	607	0
chr18	44673218	44675076	REMC_MyoepithelialBreast.70256	0	.	44673218	44675076	0	1	1858	0
chr18	44675816	44677775	REMC_MyoepithelialBreast.70257	0	.	44675816	44677775	0	1	1959	0
chr18	44680133	44682019	REMC_LuminalBreast.75556	0	.	44680133	44682019	0	1	1886	0
chr18	44680866	44682350	REMC_MyoepithelialBreast.70261	0	.	44680866	44682350	0	1	1484	0
chr18	44682220	44683005	A549_Myers.64763	0	.	44682220	44683005	0	1	785	0
chr18	44683033	44684214	REMC_MyoepithelialBreast.70262	0	.	44683033	44684214	0	1	1181	0
chr18	44688828	44689498	REMC_MyoepithelialBreast.70264	0	.	44688828	44689498	0	1	670	0
chr18	44693393	44694445	REMC_MyoepithelialBreast.70267	0	.	44693393	44694445	0	1	1052	0
chr18	44697798	44698377	A549_Myers.64764	0	.	44697798	44698377	0	1	579	0
chr18	44732524	44733318	B_Cells_Pritchard.2433389	0	-	44732524	44733318	0	1	794	0
chr18	44732609	44733722	REMC_MyoepithelialBreast.70278	0	.	44732609	44733722	0	1	1113	0
chr18	44732679	44733280	REMC_BreastStem.38364	0	.	44732679	44733280	0	1	601	0
chr18	44732686	44733093	REMC_LuminalBreast.75574	0	.	44732686	44733093	0	1	407	0
chr18	44732765	44733669	CD4_Plagnol_resting.47662	0	.	44732765	44733669	0	1	904	0
chr18	44735016	44737484	REMC_MyoepithelialBreast.70280	0	.	44735016	44737484	0	1	2468	0
chr18	44736399	44737670	REMC_BreastStem.38366	0	.	44736399	44737670	0	1	1271	0
chr18	44736451	44737677	REMC_LuminalBreast.75575	0	.	44736451	44737677	0	1	1226	0
chr18	44736470	44736954	B_Cells_Pritchard.2433399	0	.	44736470	44736954	0	1	484	0
chr18	44742879	44743832	prostate_carcinoma.74729	0	.	44742879	44743832	0	1	953	0
chr18	44755267	44756214	prostate_carcinoma.74732	0	.	44755267	44756214	0	1	947	0
chr18	44755612	44757083	B_Cells_Pritchard.2433565	0	.	44755612	44757083	0	1	1471	0
chr18	44755835	44756176	B_cells_Cheung.146358	0	.	44755835	44756176	0	1	341	0
chr18	44756616	44758496	REMC_LuminalBreast.75576	0	.	44756616	44758496	0	1	1880	0
chr18	44762615	44763167	BT474_Burge_Thompson.25959	0	.	44762615	44763167	0	1	552	0
chr18	44767200	44768023	BT474_Burge_Thompson.25960	0	.	44767200	44768023	0	1	823	0
chr18	44770132	44771291	REMC_LuminalBreast.75577	0	.	44770132	44771291	0	1	1159	0
chr18	44773440	44774607	REMC_LuminalBreast.75579	0	.	44773440	44774607	0	1	1167	0
chr18	44775046	44801821	Rinn_00026520	0	-	44775046	44801821	0	2	1115,51	0,26724
chr18	44775057	44775609	HeLa_polyA+_Chen.27598	0	.	44775057	44775609	0	1	552	0
chr18	44775063	44776351	MCF7_Burge_Thompson.24171	0	.	44775063	44776351	0	1	1288	0
chr18	44775156	44776096	prostate_carcinoma.74733	0	.	44775156	44776096	0	1	940	0
chr18	44775228	44775706	ZR751_Thompson.18446	0	.	44775228	44775706	0	1	478	0
chr18	44775253	44776843	REMC_LuminalBreast.75580	0	.	44775253	44776843	0	1	1590	0
chr18	44777112	44783607	REMC_LuminalBreast.75581	0	.	44777112	44783607	0	1	6495	0
chr18	44778590	44778967	A549_Myers.64788	0	.	44778590	44778967	0	1	377	0
chr18	44783791	44785486	REMC_LuminalBreast.75582	0	.	44783791	44785486	0	1	1695	0
chr18	44785629	44790459	REMC_LuminalBreast.75583	0	.	44785629	44790459	0	1	4830	0
chr18	44787208	44789525	HeLa_polyA+_Chen.27606	0	.	44787208	44789525	0	1	2317	0
chr18	44787422	44789056	REMC_BreastStem.38337	0	.	44787422	44789056	0	1	1634	0
chr18	44789080	44789965	REMC_BreastStem.38339	0	.	44789080	44789965	0	1	885	0
chr18	44790563	44801902	REMC_LuminalBreast.75584	0	.	44790563	44801902	0	1	11339	0
chr18	44790589	44801902	REMC_LuminalBreast.75585	0	+	44790589	44801902	0	2	110,9386	0,1927
chr18	44792944	44796020	REMC_BreastStem.38341	0	.	44792944	44796020	0	1	3076	0
chr18	44793291	44796071	HeLa_polyA+_Chen.27609	0	.	44793291	44796071	0	1	2780	0
chr18	44793346	44794027	T47D_Burge_Thompson.22241	0	.	44793346	44794027	0	1	681	0
chr18	44793366	44794008	MCF7_Burge_Thompson.24174	0	.	44793366	44794008	0	1	642	0
chr18	44796213	44797265	REMC_MyoepithelialBreast.70284	0	.	44796213	44797265	0	1	1052	0
chr18	44796352	44797420	REMC_BreastStem.38342	0	.	44796352	44797420	0	1	1068	0
chr18	44796384	44797935	HeLa_polyA+_Chen.27610	0	.	44796384	44797935	0	1	1551	0
chr18	44796964	44797539	MCF7_Burge_Thompson.24175	0	.	44796964	44797539	0	1	575	0
chr18	44797100	44797969	A549_Myers.64791	0	.	44797100	44797969	0	1	869	0
chr18	44797504	44801873	REMC_BreastStem.38338	0	.	44797504	44801873	0	1	4369	0
chr18	44797537	44802510	B_Cells_Pritchard.2433871	0	+	44797537	44802510	0	2	540,139	0,4834
chr18	44797987	44801888	HeLa_polyA+_Chen.27611	0	.	44797987	44801888	0	1	3901	0
chr18	44798040	44800145	HIT000049460	0	-	44798040	44800145	0	1	2105	0
chr18	44798902	44801921	MCF7_Burge_Thompson.24176	0	.	44798902	44801921	0	1	3019	0
chr18	44798957	44799426	T47D_Burge_Thompson.22242	0	.	44798957	44799426	0	1	469	0
chr18	44799090	44799528	HeLa_polyA-_Chen.14934	0	.	44799090	44799528	0	1	438	0
chr18	44799179	44801361	REMC_MyoepithelialBreast.70285	0	.	44799179	44801361	0	1	2182	0
chr18	44799351	44800899	MIP101.52338	0	.	44799351	44800899	0	1	1548	0
chr18	44799655	44800466	T47D_Burge_Thompson.22243	0	.	44799655	44800466	0	1	811	0
chr18	44799756	44800267	HeLa_polyA-_Chen.14935	0	.	44799756	44800267	0	1	511	0
chr18	44799815	44800761	H1_polyA+.88144	0	.	44799815	44800761	0	1	946	0
chr18	44799884	44800305	A549_Myers.64792	0	.	44799884	44800305	0	1	421	0
chr18	44799894	44800311	BT474_Burge_Thompson.25962	0	.	44799894	44800311	0	1	417	0
chr18	44800448	44800912	BT474_Burge_Thompson.25963	0	.	44800448	44800912	0	1	464	0
chr18	44800996	44801723	T47D_Burge_Thompson.22244	0	.	44800996	44801723	0	1	727	0
chr18	44801928	44802520	A549_Myers.64794	0	.	44801928	44802520	0	1	592	0
chr18	44802416	44803310	REMC_BreastStem.38343	0	.	44802416	44803310	0	1	894	0
chr18	44804678	44805459	REMC_BreastStem.38345	0	.	44804678	44805459	0	1	781	0
chr18	44805007	44807053	REMC_LuminalBreast.75586	0	.	44805007	44807053	0	1	2046	0
chr18	44805034	44806608	REMC_MyoepithelialBreast.70286	0	.	44805034	44806608	0	1	1574	0
chr18	44805764	44809229	REMC_BreastStem.38346	0	.	44805764	44809229	0	1	3465	0
chr18	44807507	44809573	REMC_LuminalBreast.75587	0	.	44807507	44809573	0	1	2066	0
chr18	44808789	44809689	REMC_MyoepithelialBreast.70288	0	.	44808789	44809689	0	1	900	0
chr18	44809723	44815055	REMC_LuminalBreast.75588	0	.	44809723	44815055	0	1	5332	0
chr18	44809818	44814864	REMC_MyoepithelialBreast.70289	0	.	44809818	44814864	0	1	5046	0
chr18	44810407	44812427	REMC_BreastStem.38347	0	.	44810407	44812427	0	1	2020	0
chr18	45258619	45260509	H9_polyA+.33802	0	+	45258619	45260509	0	2	71,491	0,1399
chr18	45258851	45260514	REMC_MyoepithelialBreast.70291	0	.	45258851	45260514	0	1	1663	0
chr18	45258884	45260448	melanoma_Garraway_short_term_cultures.51662	0	.	45258884	45260448	0	1	1564	0
chr18	45258889	45260518	MCF10A_Thompson.16278	0	.	45258889	45260518	0	1	1629	0
chr18	45258894	45260506	BT474_Burge_Thompson.25969	0	.	45258894	45260506	0	1	1612	0
chr18	45259493	45260509	H9_polyA+.33801	0	.	45259493	45260509	0	1	1016	0
chr18	45259733	45260439	MDAMB468_Thompson.18267	0	.	45259733	45260439	0	1	706	0
chr18	45275638	45276439	MeWo_Garraway.27753	0	.	45275638	45276439	0	1	801	0
chr18	45275640	45277056	H1_polyA+.88167	0	.	45275640	45277056	0	1	1416	0
chr18	45275963	45277071	K562.33826	0	.	45275963	45277071	0	1	1108	0
chr18	45595605	45599166	H1_polyA+.88340	0	.	45595605	45599166	0	1	3561	0
chr18	45596963	45599354	REMC_LuminalBreast.75971	0	.	45596963	45599354	0	1	2391	0
chr18	45597420	45598732	REMC_MyoepithelialBreast.70309	0	.	45597420	45598732	0	1	1312	0
chr18	45597635	45599159	HepG2_Caltech_ENCODE.28132	0	.	45597635	45599159	0	1	1524	0
chr18	45597773	45599165	B_Cells_Pritchard.2435995	0	.	45597773	45599165	0	1	1392	0
chr18	45597830	45599177	B_cells_Cheung.146690	0	.	45597830	45599177	0	1	1347	0
chr18	45599363	45601678	B_cells_Cheung.146691	0	.	45599363	45601678	0	1	2315	0
chr18	45599380	45601576	B_Cells_Pritchard.2435997	0	.	45599380	45601576	0	1	2196	0
chr18	45599517	45599846	HeLa_polyA+_Chen.27634	0	.	45599517	45599846	0	1	329	0
chr18	46002397	46003759	REMC_LuminalBreast.75676	0	.	46002397	46003759	0	1	1362	0
chr18	46175583	46177131	MIP101.52479	0	.	46175583	46177131	0	1	1548	0
chr18	46186022	46187184	MIP101.52481	0	.	46186022	46187184	0	1	1162	0
chr18	46230040	46230580	B_cells_Cheung.146756	0	.	46230040	46230580	0	1	540	0
chr18	46230254	46236778	B_Cells_Pritchard.2437337	0	-	46230254	46236778	0	2	775,68	0,6456
chr18	46315233	46315901	BT474_Burge_Thompson.26006	0	.	46315233	46315901	0	1	668	0
chr18	46547404	46548081	B_Cells_Pritchard.2438201	0	.	46547404	46548081	0	1	677	0
chr18	46780231	46780601	B_cells_Cheung.147176	0	.	46780231	46780601	0	1	370	0
chr18	46780300	46780886	B_Cells_Pritchard.2438589	0	.	46780300	46780886	0	1	586	0
chr18	46780489	46780902	prostate_carcinoma.74893	0	.	46780489	46780902	0	1	413	0
chr18	46793329	46796127	B_cells_Cheung.147184	0	.	46793329	46796127	0	3	871,1058,372	0,1272,2426
chr18	46794710	46796084	REMC_LuminalBreast.75818	0	.	46794710	46796084	0	1	1374	0
chr18	46796978	46798608	B_cells_Cheung.147186	0	.	46796978	46798608	0	1	1630	0
chr18	46797064	46798406	REMC_MyoepithelialBreast.70463	0	.	46797064	46798406	0	1	1342	0
chr18	46797196	46798584	H1_polyA+.88401	0	.	46797196	46798584	0	1	1388	0
chr18	46797277	46799992	REMC_LuminalBreast.75819	0	.	46797277	46799992	0	1	2715	0
chr18	46799652	46802911	khalil_942	0	.	46799652	46802911	0	3	282,382,147	0,2290,3112
chr18	46800701	46802496	MIP101.52667	0	.	46800701	46802496	0	1	1795	0
chr18	46801978	46802299	B_cells_Cheung.147189	0	.	46801978	46802299	0	1	321	0
chr18	46802039	46802344	B_Cells_Pritchard.2438633	0	-	46802039	46802344	0	1	305	0
chr18	46866975	46868297	REMC_MyoepithelialBreast.70468	0	.	46866975	46868297	0	1	1322	0
chr18	46871104	46872047	MIP101.52689	0	.	46871104	46872047	0	1	943	0
chr18	46871563	46872067	prostate_carcinoma.74913	0	.	46871563	46872067	0	1	504	0
chr18	46874411	46875770	REMC_LuminalBreast.75832	0	.	46874411	46875770	0	1	1359	0
chr18	46874604	46875364	REMC_MyoepithelialBreast.70471	0	.	46874604	46875364	0	1	760	0
chr18	46877131	46885587	REMC_LuminalBreast.75834	0	.	46877131	46885587	0	1	8456	0
chr18	46877168	46880419	REMC_MyoepithelialBreast.70472	0	.	46877168	46880419	0	1	3251	0
chr18	46879474	46881217	MIP101.52692	0	.	46879474	46881217	0	1	1743	0
chr18	46879900	46880963	H1_polyA+.88313	0	.	46879900	46880963	0	1	1063	0
chr18	46880488	46882257	REMC_MyoepithelialBreast.70473	0	.	46880488	46882257	0	1	1769	0
chr18	46881029	46881558	H1_polyA+.88314	0	.	46881029	46881558	0	1	529	0
chr18	46881498	46882301	melanoma_Garraway_short_term_cultures.51746	0	.	46881498	46882301	0	1	803	0
chr18	46881659	46882266	H1_polyA+.88315	0	.	46881659	46882266	0	1	607	0
chr18	46881766	46882163	prostate_carcinoma.74914	0	.	46881766	46882163	0	1	397	0
chr18	46890506	46891038	B_Cells_Pritchard.2438693	0	.	46890506	46891038	0	1	532	0
chr18	46890695	46891196	A549_Myers.64878	0	.	46890695	46891196	0	1	501	0
chr18	46905543	46906928	REMC_MyoepithelialBreast.70477	0	.	46905543	46906928	0	1	1385	0
chr18	46916691	46919717	REMC_LuminalBreast.75787	0	.	46916691	46919717	0	1	3026	0
chr18	46917085	46919014	B_Cells_Pritchard.2438789	0	.	46917085	46919014	0	1	1929	0
chr18	46917186	46918780	REMC_MyoepithelialBreast.70483	0	.	46917186	46918780	0	1	1594	0
chr18	46917282	46918886	B_cells_Cheung.146990	0	.	46917282	46918886	0	1	1604	0
chr18	46917283	46918657	MIP101.52502	0	.	46917283	46918657	0	1	1374	0
chr18	46917737	46918447	REMC_BreastStem.38387	0	.	46917737	46918447	0	1	710	0
chr18	46920429	46928695	REMC_MyoepithelialBreast.70485	0	.	46920429	46928695	0	1	8266	0
chr18	46921691	46922302	B_Cells_Pritchard.2438801	0	.	46921691	46922302	0	1	611	0
chr18	46921767	46923091	H1_polyA+.88323	0	.	46921767	46923091	0	1	1324	0
chr18	46921789	46922267	B_cells_Cheung.146993	0	.	46921789	46922267	0	1	478	0
chr18	46921852	46923384	REMC_BreastStem.38390	0	.	46921852	46923384	0	1	1532	0
chr18	46923694	46925096	REMC_BreastStem.38391	0	.	46923694	46925096	0	1	1402	0
chr18	46924206	46924665	B_Cells_Pritchard.2438809	0	.	46924206	46924665	0	1	459	0
chr18	46925079	46928680	REMC_LuminalBreast.75792	0	.	46925079	46928680	0	1	3601	0
chr18	46925221	46929603	REMC_BreastStem.38392	0	.	46925221	46929603	0	1	4382	0
chr18	46928880	46934157	REMC_LuminalBreast.75793	0	.	46928880	46934157	0	1	5277	0
chr18	46929910	46934507	REMC_BreastStem.38393	0	.	46929910	46934507	0	1	4597	0
chr18	46929949	46933057	B_Cells_Pritchard.2438829	0	.	46929949	46933057	0	1	3108	0
chr18	46931434	46933388	B_cells_Cheung.147003	0	.	46931434	46933388	0	1	1954	0
chr18	46931623	46933172	H1_polyA+.88328	0	.	46931623	46933172	0	1	1549	0
chr18	46931787	46933167	MIP101.52503	0	.	46931787	46933167	0	1	1380	0
chr18	46934448	46941731	REMC_LuminalBreast.75794	0	.	46934448	46941731	0	1	7283	0
chr18	46934705	46938919	REMC_BreastStem.38394	0	.	46934705	46938919	0	1	4214	0
chr18	46938979	46940756	B_cells_Cheung.147009	0	.	46938979	46940756	0	1	1777	0
chr18	46939047	46941735	REMC_BreastStem.38395	0	.	46939047	46941735	0	1	2688	0
chr18	46939078	46940720	H1_polyA+.88333	0	.	46939078	46940720	0	1	1642	0
chr18	46939091	46940737	melanoma_Garraway_short_term_cultures.51752	0	.	46939091	46940737	0	1	1646	0
chr18	46939095	46940749	B_Cells_Pritchard.2438847	0	.	46939095	46940749	0	1	1654	0
chr18	46939096	46939799	CD4_Plagnol_activated.49159	0	.	46939096	46939799	0	1	703	0
chr18	46946408	46946856	B_cells_Cheung.147014	0	.	46946408	46946856	0	1	448	0
chr18	46946528	46946868	CD4_Plagnol_resting.47771	0	.	46946528	46946868	0	1	340	0
chr18	47343551	47344163	brain_AmbionMAQC.33522	0	.	47343551	47344163	0	1	612	0
chr18	47702098	47702923	B_cells_Cheung.147069	0	.	47702098	47702923	0	1	825	0
chr18	47736529	47737878	B_cells_Cheung.147073	0	.	47736529	47737878	0	1	1349	0
chr18	47738090	47738835	B_cells_Cheung.147074	0	.	47738090	47738835	0	1	745	0
chr18	48000558	48001158	B_cells_Cheung.147086	0	.	48000558	48001158	0	1	600	0
chr18	49457128	49458389	REMC_MyoepithelialBreast.70538	0	.	49457128	49458389	0	1	1261	0
chr18	49653446	49655906	REMC_LuminalBreast.75811	0	.	49653446	49655906	0	1	2460	0
chr18	49684599	49686520	REMC_LuminalBreast.75841	0	.	49684599	49686520	0	1	1921	0
chr18	49700953	49701423	BT474_Burge_Thompson.26035	0	.	49700953	49701423	0	1	470	0
chr18	49701012	49701569	prostate_carcinoma.74926	0	.	49701012	49701569	0	1	557	0
chr18	49701019	49701569	B_Cells_Pritchard.2445179	0	.	49701019	49701569	0	1	550	0
chr18	49701098	49701696	REMC_LuminalBreast.75848	0	.	49701098	49701696	0	1	598	0
chr18	49745054	49804529	pHIT000118363	0	+	49745054	49804529	0	4	141,85,189,204	0,29900,58985,59271
chr18	49757297	49757819	REMC_LuminalBreast.75858	0	.	49757297	49757819	0	1	522	0
chr18	49783556	49785094	REMC_LuminalBreast.75869	0	.	49783556	49785094	0	1	1538	0
chr18	49785622	49786714	REMC_LuminalBreast.75870	0	.	49785622	49786714	0	1	1092	0
chr18	49802741	49803927	REMC_LuminalBreast.75859	0	.	49802741	49803927	0	1	1186	0
chr18	49860662	49864306	REMC_LuminalBreast.75890	0	.	49860662	49864306	0	1	3644	0
chr18	49889519	49895627	REMC_LuminalBreast.75902	0	.	49889519	49895627	0	1	6108	0
chr18	49890589	49895453	REMC_MyoepithelialBreast.70579	0	.	49890589	49895453	0	1	4864	0
chr18	49891324	49894392	B_cells_Cheung.147143	0	.	49891324	49894392	0	1	3068	0
chr18	49891883	49894451	B_Cells_Pritchard.2445865	0	.	49891883	49894451	0	1	2568	0
chr18	49901931	49902855	REMC_MyoepithelialBreast.70581	0	.	49901931	49902855	0	1	924	0
chr18	49904491	49906230	REMC_MyoepithelialBreast.70582	0	.	49904491	49906230	0	1	1739	0
chr18	49904524	49907213	REMC_LuminalBreast.75904	0	.	49904524	49907213	0	1	2689	0
chr18	49919051	49926221	B_cells_Cheung.147263	0	.	49919051	49926221	0	1	7170	0
chr18	50091444	50093911	H1_polyA+.88421	0	.	50091444	50093911	0	1	2467	0
chr18	50093135	50096144	REMC_LuminalBreast.75912	0	.	50093135	50096144	0	1	3009	0
chr18	50093876	50095358	MIP101.52539	0	.	50093876	50095358	0	1	1482	0
chr18	50093911	50094374	H1_polyA+.88422	0	.	50093911	50094374	0	1	463	0
chr18	50094431	50096963	H1_polyA+.88423	0	.	50094431	50096963	0	1	2532	0
chr18	50096130	50096731	B_Cells_Pritchard.2446193	0	.	50096130	50096731	0	1	601	0
chr18	50195947	50259043	pHIT000118365	0	+	50195947	50259043	0	5	10,266,245,101,176	0,312,21583,21978,62920
chr18	50422179	50423104	REMC_LuminalBreast.75918	0	.	50422179	50423104	0	1	925	0
chr18	50715393	50715983	prostate_carcinoma.74976	0	.	50715393	50715983	0	1	590	0
chr18	50924132	50942535	HIT000018800	0	+	50924132	50942535	0	3	2750,130,187	0,11050,18216
chr18	51549675	51552809	H1_polyA+.88483	0	.	51549675	51552809	0	1	3134	0
chr18	51574562	51581402	H1_polyA+.88492	0	.	51574562	51581402	0	1	6840	0
chr18	51590388	51601841	H1_polyA+.88498	0	.	51590388	51601841	0	1	11453	0
chr18	51591544	51598387	Rinn_00026525	0	-	51591544	51598387	0	2	6715,11	0,6832
chr18	51594954	51599950	Rinn_00026208	0	-	51594954	51599950	0	2	3305,768	0,4228
chr18	51594955	51599950	ENST00000498862	0	-	51594955	51599950	0	2	3304,767	0,4228
chr18	51594955	51599951	HIT000047660	0	-	51594955	51599951	0	2	3304,768	0,4228
chr18	51635395	51637995	HIT000022634	0	+	51635395	51637995	0	1	2600	0
chr18	51650276	51652768	H1_polyA+.88509	0	.	51650276	51652768	0	1	2492	0
chr18	51656045	51657782	H1_polyA+.88510	0	.	51656045	51657782	0	1	1737	0
chr18	51656548	51657333	H9_polyA+.33912	0	.	51656548	51657333	0	1	785	0
chr18	51667164	51670401	H1_polyA+.88430	0	.	51667164	51670401	0	1	3237	0
chr18	51675584	51677971	H1_polyA+.88433	0	.	51675584	51677971	0	1	2387	0
chr18	51683581	51686097	H1_polyA+.88434	0	+	51683581	51686097	0	2	379,2006	0,510
chr18	51724753	51732432	H1_polyA+.88446	0	.	51724753	51732432	0	1	7679	0
chr18	51735396	51737748	H1_polyA+.88448	0	.	51735396	51737748	0	1	2352	0
chr18	51741821	51742195	H9_polyA-_Chen.10878	0	.	51741821	51742195	0	1	374	0
chr18	51750536	51751493	H9_polyA-_Chen.10880	0	.	51750536	51751493	0	1	957	0
chr18	51810177	51811574	H1_polyA+.88470	0	.	51810177	51811574	0	1	1397	0
chr18	52232151	52233627	H1_polyA+.88520	0	.	52232151	52233627	0	1	1476	0
chr18	52288847	52289216	B_Cells_Pritchard.2450413	0	.	52288847	52289216	0	1	369	0
chr18	52408061	52412494	REMC_MyoepithelialBreast.70574	0	.	52408061	52412494	0	1	4433	0
chr18	52410021	52411643	REMC_LuminalBreast.75938	0	.	52410021	52411643	0	1	1622	0
chr18	52852333	52852958	B_cells_Cheung.147292	0	.	52852333	52852958	0	1	625	0
chr18	52852564	52854613	prostate_carcinoma.75025	0	.	52852564	52854613	0	1	2049	0
chr18	52858142	52860315	MIP101.52627	0	.	52858142	52860315	0	1	2173	0
chr18	52863811	52867540	Rinn_00026340	0	+	52863811	52867540	0	2	449,1111	0,2618
chr18	52864168	52865215	MIP101.52629	0	.	52864168	52865215	0	1	1047	0
chr18	52864169	52865925	prostate_carcinoma.75027	0	.	52864169	52865925	0	1	1756	0
chr18	52864501	52865479	H1_polyA+.88526	0	.	52864501	52865479	0	1	978	0
chr18	52866387	52867202	prostate_carcinoma.75028	0	.	52866387	52867202	0	1	815	0
chr18	52866557	52867284	REMC_MyoepithelialBreast.70611	0	.	52866557	52867284	0	1	727	0
chr18	52866723	52867635	MIP101.52630	0	.	52866723	52867635	0	1	912	0
chr18	52868280	52868883	B_Cells_Pritchard.2452259	0	.	52868280	52868883	0	1	603	0
chr18	52869349	52870089	B_Cells_Pritchard.2452265	0	.	52869349	52870089	0	1	740	0
chr18	52869349	52869810	prostate_carcinoma.75029	0	.	52869349	52869810	0	1	461	0
chr18	52872541	52876368	B_Cells_Pritchard.2452275	0	-	52872541	52876368	0	2	1955,640	0,3187
chr18	52872623	52877089	H1_polyA+.88527	0	.	52872623	52877089	0	1	4466	0
chr18	52872623	52876952	H1_polyA+.88528	0	-	52872623	52876952	0	2	3606,46	0,4283
chr18	52872826	52874469	H1_rRNA-depleted_UCSD_REMC.65991	0	.	52872826	52874469	0	1	1643	0
chr18	52874252	52874668	H9_polyA+.33945	0	.	52874252	52874668	0	1	416	0
chr18	52880932	52882917	H1_polyA+.88529	0	.	52880932	52882917	0	1	1985	0
chr18	52946619	52948458	H1_polyA+.88534	0	.	52946619	52948458	0	1	1839	0
chr18	53052582	53053184	B_Cells_Pritchard.2452631	0	.	53052582	53053184	0	1	602	0
chr18	53130805	53132073	liver_polyA+.102162	0	.	53130805	53132073	0	1	1268	0
chr18	53144851	53145760	liver_polyA+.102173	0	.	53144851	53145760	0	1	909	0
chr18	53156890	53157245	liver_polyA+.102180	0	.	53156890	53157245	0	1	355	0
chr18	53158451	53158922	liver_polyA+.102183	0	.	53158451	53158922	0	1	471	0
chr18	53246049	53246440	testes_Burge.40612	0	.	53246049	53246440	0	1	391	0
chr18	53246182	53247199	HeLa_polyA-_Chen.14982	0	.	53246182	53247199	0	1	1017	0
chr18	53246358	53247432	HeLa_polyA+_Chen.27716	0	.	53246358	53247432	0	1	1074	0
chr18	53246478	53247597	liver_polyA+.102194	0	.	53246478	53247597	0	1	1119	0
chr18	53246554	53247143	testes_Burge.40611	0	.	53246554	53247143	0	1	589	0
chr18	53248424	53249166	HeLa_polyA+_Chen.27717	0	.	53248424	53249166	0	1	742	0
chr18	53345385	53345780	B_cells_Cheung.147314	0	.	53345385	53345780	0	1	395	0
chr18	53345795	53361757	pHIT000118374	0	+	53345795	53361757	0	5	56,91,84,132,177	0,4441,9044,11144,15785
chr18	53415528	53416036	B_cells_Cheung.147325	0	.	53415528	53416036	0	1	508	0
chr18	53442059	53442431	B_cells_Cheung.147336	0	.	53442059	53442431	0	1	372	0
chr18	53446150	53446924	B_Cells_Pritchard.2456279	0	-	53446150	53446924	0	1	774	0
chr18	53448489	53460257	B_cells_Cheung.147345	0	+	53448489	53460257	0	3	259,194,469	0,1311,11299
chr18	53448496	53460265	REMC_BreastStem.38473	0	+	53448496	53460265	0	2	252,477	0,11292
chr18	53448541	53460246	B_Cells_Pritchard.2456287	0	+	53448541	53460246	0	3	207,158,231	0,11247,11474
chr18	53448549	53459934	CD4_Plagnol_activated.49249	0	+	53448549	53459934	0	2	199,146	0,11239
chr18	53448576	53460162	H1_polyA+.88562	0	+	53448576	53460162	0	2	172,374	0,11212
chr18	53448586	53460347	H9_polyA+.33966	0	+	53448586	53460347	0	2	162,559	0,11202
chr18	53459593	53460482	REMC_LuminalBreast.76053	0	.	53459593	53460482	0	1	889	0
chr18	53459656	53460264	melanoma_Garraway_short_term_cultures.51820	0	.	53459656	53460264	0	1	608	0
chr18	53459697	53460461	H1_polyA+.88564	0	.	53459697	53460461	0	1	764	0
chr18	53459709	53460265	REMC_BreastStem.38474	0	.	53459709	53460265	0	1	556	0
chr18	53460800	53461268	REMC_LuminalBreast.76057	0	.	53460800	53461268	0	1	468	0
chr18	53460815	53461277	H1_polyA+.88565	0	.	53460815	53461277	0	1	462	0
chr18	53461876	53463422	REMC_LuminalBreast.76058	0	.	53461876	53463422	0	1	1546	0
chr18	53461902	53462243	B_cells_Cheung.147347	0	.	53461902	53462243	0	1	341	0
chr18	53463035	53463422	liver_polyA+.102222	0	.	53463035	53463422	0	1	387	0
chr18	53635612	53636423	REMC_LuminalBreast.75993	0	.	53635612	53636423	0	1	811	0
chr18	53635976	53636654	B_Cells_Pritchard.2453767	0	.	53635976	53636654	0	1	678	0
chr18	53648076	53649055	B_Cells_Pritchard.2453815	0	.	53648076	53649055	0	1	979	0
chr18	53654873	53655573	B_Cells_Pritchard.2453837	0	.	53654873	53655573	0	1	700	0
chr18	53657974	53659094	REMC_MyoepithelialBreast.70649	0	.	53657974	53659094	0	1	1120	0
chr18	53677816	53679108	REMC_MyoepithelialBreast.70654	0	.	53677816	53679108	0	1	1292	0
chr18	54223036	54224775	REMC_LuminalBreast.76010	0	.	54223036	54224775	0	1	1739	0
chr18	54223780	54224708	melanoma_Garraway_short_term_cultures.51877	0	.	54223780	54224708	0	1	928	0
chr18	54224025	54224396	liver_polyA+.102366	0	.	54224025	54224396	0	1	371	0
chr18	54224091	54224729	REMC_MyoepithelialBreast.71572	0	.	54224091	54224729	0	1	638	0
chr18	54225022	54225566	REMC_LuminalBreast.76011	0	.	54225022	54225566	0	1	544	0
chr18	54230307	54231807	REMC_LuminalBreast.76013	0	.	54230307	54231807	0	1	1500	0
chr18	54230943	54233954	liver_polyA+.102373	0	.	54230943	54233954	0	1	3011	0
chr18	54231114	54233364	REMC_MyoepithelialBreast.71575	0	.	54231114	54233364	0	1	2250	0
chr18	54235363	54236076	liver_polyA+.102372	0	.	54235363	54236076	0	1	713	0
chr18	54236494	54237502	HepG2_Caltech_ENCODE.28246	0	.	54236494	54237502	0	1	1008	0
chr18	54236914	54239789	REMC_MyoepithelialBreast.71577	0	.	54236914	54239789	0	1	2875	0
chr18	54242024	54243557	REMC_MyoepithelialBreast.70727	0	.	54242024	54243557	0	1	1533	0
chr18	54263352	54265240	REMC_MyoepithelialBreast.70734	0	.	54263352	54265240	0	1	1888	0
chr18	54269860	54271016	liver_polyA+.102379	0	.	54269860	54271016	0	1	1156	0
chr18	54284937	54286111	HepG2_Caltech_ENCODE.28251	0	.	54284937	54286111	0	1	1174	0
chr18	54455398	54456096	B_cells_Cheung.147818	0	.	54455398	54456096	0	1	698	0
chr18	54458356	54459589	B_Cells_Pritchard.2457663	0	+	54458356	54459589	0	1	1233	0
chr18	54458380	54459769	B_cells_Cheung.147821	0	.	54458380	54459769	0	1	1389	0
chr18	54471675	54481274	B_Cells_Pritchard.2457653	0	+	54471675	54481274	0	6	183,2277,122,1246,1113,1605	0,2762,5046,5304,6692,7994
chr18	54473407	54485389	B_Cells_Pritchard.2457655	0	-	54473407	54485389	0	7	435,1491,1884,1879,109,1598,81	0,1813,4246,6159,8370,8532,11901
chr18	54572755	54574154	CD4_Plagnol_resting.47966	0	.	54572755	54574154	0	1	1399	0
chr18	54573292	54574659	prostate_normal.44356	0	.	54573292	54574659	0	1	1367	0
chr18	54573548	54574602	melanoma_Garraway_short_term_cultures.51891	0	.	54573548	54574602	0	1	1054	0
chr18	54577789	54579139	REMC_MyoepithelialBreast.70760	0	.	54577789	54579139	0	1	1350	0
chr18	54579116	54579852	REMC_LuminalBreast.76021	0	.	54579116	54579852	0	1	736	0
chr18	54579325	54581613	REMC_MyoepithelialBreast.70762	0	.	54579325	54581613	0	1	2288	0
chr18	54579648	54581625	prostate_carcinoma.75355	0	.	54579648	54581625	0	1	1977	0
chr18	54579960	54581393	REMC_LuminalBreast.76022	0	.	54579960	54581393	0	1	1433	0
chr18	54580657	54581058	B_Cells_Pritchard.2456315	0	.	54580657	54581058	0	1	401	0
chr18	54580692	54581579	REMC_BreastStem.38483	0	.	54580692	54581579	0	1	887	0
chr18	54584577	54585477	prostate_carcinoma.75357	0	.	54584577	54585477	0	1	900	0
chr18	54586108	54587426	prostate_carcinoma.75358	0	.	54586108	54587426	0	1	1318	0
chr18	54586369	54586949	A549_Myers.65058	0	.	54586369	54586949	0	1	580	0
chr18	54586794	54587177	prostate_normal.44368	0	.	54586794	54587177	0	1	383	0
chr18	54588605	54589176	REMC_MyoepithelialBreast.70764	0	.	54588605	54589176	0	1	571	0
chr18	54588643	54589179	prostate_carcinoma.75361	0	.	54588643	54589179	0	1	536	0
chr18	54589962	54591029	REMC_MyoepithelialBreast.70765	0	.	54589962	54591029	0	1	1067	0
chr18	54590050	54591127	prostate_normal.44371	0	.	54590050	54591127	0	1	1077	0
chr18	54600056	54600398	B_Cells_Pritchard.2456351	0	+	54600056	54600398	0	1	342	0
chr18	54602558	54603198	B_Cells_Pritchard.2456469	0	+	54602558	54603198	0	2	177,375	0,265
chr18	54602609	54603140	BT474_Burge_Thompson.26080	0	.	54602609	54603140	0	1	531	0
chr18	54602804	54603166	A549_Myers.65060	0	.	54602804	54603166	0	1	362	0
chr18	54645980	54647118	prostate_normal.44375	0	.	54645980	54647118	0	1	1138	0
chr18	54656372	54657418	prostate_normal.44378	0	.	54656372	54657418	0	1	1046	0
chr18	54810119	54810872	B_Cells_Pritchard.2457255	0	.	54810119	54810872	0	1	753	0
chr18	54814131	54814629	prostate_carcinoma.75647	0	.	54814131	54814629	0	1	498	0
chr18	54890330	54890986	prostate_normal.44413	0	.	54890330	54890986	0	1	656	0
chr18	54902936	54903539	prostate_carcinoma.75372	0	.	54902936	54903539	0	1	603	0
chr18	55105544	55107201	REMC_MyoepithelialBreast.70792	0	.	55105544	55107201	0	1	1657	0
chr18	55214284	55214944	prostate_carcinoma.75389	0	.	55214284	55214944	0	1	660	0
chr18	55625897	55626344	B_Cells_Pritchard.2459629	0	+	55625897	55626344	0	1	447	0
chr18	55637083	55658649	B_Cells_Pritchard.2459675	0	+	55637083	55658649	0	5	211,814,122,108,319	0,4754,5773,5906,21247
chr18	55641442	55642659	B_cells_Cheung.147926	0	.	55641442	55642659	0	1	1217	0
chr18	55642175	55642628	H1_polyA+.88803	0	.	55642175	55642628	0	1	453	0
chr18	55642194	55642623	MeWo_Garraway.27859	0	.	55642194	55642623	0	1	429	0
chr18	55642245	55642608	K562.33972	0	.	55642245	55642608	0	1	363	0
chr18	55672308	55681594	B_Cells_Pritchard.2459757	0	-	55672308	55681594	0	3	377,339,27	0,377,9259
chr18	55756137	55756485	B_Cells_Pritchard.2460039	0	.	55756137	55756485	0	1	348	0
chr18	55828137	55829355	pHIT000118398	0	-	55828137	55829355	0	1	1218	0
chr18	55828233	55828876	K562.33979	0	.	55828233	55828876	0	1	643	0
chr18	55828382	55828740	HeLa_polyA+_Chen.27755	0	.	55828382	55828740	0	1	358	0
chr18	55828393	55828755	HepG2_Caltech_ENCODE.28289	0	.	55828393	55828755	0	1	362	0
chr18	55828395	55828752	H1_polyA+.88809	0	.	55828395	55828752	0	1	357	0
chr18	55828399	55828771	REMC_LuminalBreast.76096	0	.	55828399	55828771	0	1	372	0
chr18	55828582	55828997	B_cells_Cheung.147974	0	.	55828582	55828997	0	1	415	0
chr18	55828855	55829307	MIP101.52775	0	.	55828855	55829307	0	1	452	0
chr18	55829060	55829369	B_cells_Cheung.147975	0	.	55829060	55829369	0	1	309	0
chr18	55855706	55856354	B_Cells_Pritchard.2460287	0	.	55855706	55856354	0	1	648	0
chr18	57396428	57426810	khalil_950	0	.	57396428	57426810	0	11	303,191,299,227,228,27,668,867,498,138,91	0,2046,3635,4269,4788,9670,25027,27686,28815,29503,30291
chr18	57517613	57518236	B_Cells_Pritchard.2463333	0	.	57517613	57518236	0	1	623	0
chr18	57569482	57571879	brain_AmbionMAQC.33635	0	.	57569482	57571879	0	1	2397	0
chr18	57587613	57588261	REMC_MyoepithelialBreast.70809	0	.	57587613	57588261	0	1	648	0
chr18	57606599	57607630	REMC_MyoepithelialBreast.70812	0	.	57606599	57607630	0	1	1031	0
chr18	57610834	57616543	REMC_MyoepithelialBreast.70813	0	.	57610834	57616543	0	1	5709	0
chr18	57615293	57617755	REMC_LuminalBreast.76106	0	.	57615293	57617755	0	1	2462	0
chr18	57712698	57713055	A549_Myers.65155	0	.	57712698	57713055	0	1	357	0
chr18	57712975	57713689	prostate_carcinoma.75437	0	.	57712975	57713689	0	1	714	0
chr18	57712987	57714006	REMC_MyoepithelialBreast.70845	0	.	57712987	57714006	0	1	1019	0
chr18	57719150	57720744	prostate_carcinoma.75438	0	.	57719150	57720744	0	1	1594	0
chr18	57770460	57772554	REMC_MyoepithelialBreast.70847	0	.	57770460	57772554	0	1	2094	0
chr18	58126485	58127287	brain_AmbionMAQC.33646	0	.	58126485	58127287	0	1	802	0
chr18	58129583	58134442	REMC_LuminalBreast.76148	0	.	58129583	58134442	0	1	4859	0
chr18	58132307	58133337	REMC_MyoepithelialBreast.70879	0	.	58132307	58133337	0	1	1030	0
chr18	58132424	58133342	B_cells_Cheung.148121	0	.	58132424	58133342	0	1	918	0
chr18	58139110	58141720	REMC_LuminalBreast.76150	0	.	58139110	58141720	0	1	2610	0
chr18	58140859	58141978	H1_polyA+.88874	0	.	58140859	58141978	0	1	1119	0
chr18	58206503	58207617	CD4_Plagnol_resting.48003	0	.	58206503	58207617	0	1	1114	0
chr18	58206881	58209367	melanoma_Garraway_short_term_cultures.51964	0	.	58206881	58209367	0	1	2486	0
chr18	58207319	58208980	B_cells_Cheung.148151	0	.	58207319	58208980	0	1	1661	0
chr18	58207854	58208772	HeLa_polyA+_Chen.27770	0	.	58207854	58208772	0	1	918	0
chr18	58259755	58260737	REMC_LuminalBreast.76178	0	.	58259755	58260737	0	1	982	0
chr18	58259858	58260764	REMC_MyoepithelialBreast.70893	0	.	58259858	58260764	0	1	906	0
chr18	58260180	58260644	B_cells_Cheung.148153	0	.	58260180	58260644	0	1	464	0
chr18	58260220	58261320	pHIT000118415	0	-	58260220	58261320	0	3	156,121,270	0,584,830
chr18	58260288	58260874	H1_polyA+.88838	0	.	58260288	58260874	0	1	586	0
chr18	58260557	58261496	melanoma_Garraway_short_term_cultures.51965	0	.	58260557	58261496	0	1	939	0
chr18	58260663	58261085	K562.34009	0	.	58260663	58261085	0	1	422	0
chr18	58260841	58261430	REMC_LuminalBreast.76179	0	.	58260841	58261430	0	1	589	0
chr18	58260929	58261932	H1_polyA+.88839	0	.	58260929	58261932	0	1	1003	0
chr18	58260948	58261916	HepG2_Caltech_ENCODE.28315	0	+	58260948	58261916	0	2	401,91	0,877
chr18	58260971	58261677	B_cells_Cheung.148192	0	.	58260971	58261677	0	1	706	0
chr18	58269033	58270687	REMC_MyoepithelialBreast.70895	0	.	58269033	58270687	0	1	1654	0
chr18	58269291	58271089	REMC_LuminalBreast.76181	0	.	58269291	58271089	0	1	1798	0
chr18	58310836	58311459	B_Cells_Pritchard.2465001	0	.	58310836	58311459	0	1	623	0
chr18	58316596	58317947	MIP101.52851	0	.	58316596	58317947	0	1	1351	0
chr18	58316841	58317798	B_cells_Cheung.148166	0	.	58316841	58317798	0	1	957	0
chr18	58317321	58318426	prostate_normal.44528	0	.	58317321	58318426	0	1	1105	0
chr18	58322340	58323151	B_cells_Cheung.148170	0	.	58322340	58323151	0	1	811	0
chr18	58323865	58324232	liver_polyA+.102653	0	.	58323865	58324232	0	1	367	0
chr18	58424836	58434720	pHIT000118418	0	+	58424836	58434720	0	4	96,201,131,58	0,4326,4579,9826
chr18	58498826	58499716	B_Cells_Pritchard.2465377	0	.	58498826	58499716	0	1	890	0
chr18	58498826	58499669	B_cells_Cheung.148190	0	.	58498826	58499669	0	1	843	0
chr18	58806051	58807026	melanoma_Garraway_short_term_cultures.52008	0	.	58806051	58807026	0	1	975	0
chr18	58820331	58820780	B_Cells_Pritchard.2466531	0	.	58820331	58820780	0	1	449	0
chr18	58875702	58876099	B_Cells_Pritchard.2466727	0	.	58875702	58876099	0	1	397	0
chr18	58881269	58881628	ZR751_Thompson.18564	0	.	58881269	58881628	0	1	359	0
chr18	58893142	58893654	B_Cells_Pritchard.2466793	0	.	58893142	58893654	0	1	512	0
chr18	58909648	58910559	BT474_Burge_Thompson.26136	0	.	58909648	58910559	0	1	911	0
chr18	58939603	58940347	B_cells_Cheung.148199	0	.	58939603	58940347	0	1	744	0
chr18	59186855	59188999	REMC_MyoepithelialBreast.70927	0	.	59186855	59188999	0	1	2144	0
chr18	59188974	59190501	B_cells_Cheung.149894	0	.	59188974	59190501	0	1	1527	0
chr18	59189077	59190207	B_Cells_Pritchard.2501697	0	-	59189077	59190207	0	1	1130	0
chr18	59190628	59192463	B_cells_Cheung.149895	0	.	59190628	59192463	0	1	1835	0
chr18	59199293	59199808	CD4_Plagnol_resting.48663	0	.	59199293	59199808	0	1	515	0
chr18	59199503	59199827	CD4_Plagnol_activated.49420	0	.	59199503	59199827	0	1	324	0
chr18	59200798	59201699	B_cells_Cheung.148216	0	.	59200798	59201699	0	1	901	0
chr18	59201028	59202275	REMC_BreastStem.38601	0	.	59201028	59202275	0	1	1247	0
chr18	59201142	59201791	REMC_MyoepithelialBreast.70931	0	.	59201142	59201791	0	1	649	0
chr18	59386354	59387239	REMC_MyoepithelialBreast.70942	0	.	59386354	59387239	0	1	885	0
chr18	59627223	59629589	REMC_LuminalBreast.76327	0	.	59627223	59629589	0	1	2366	0
chr18	59643056	59643930	REMC_LuminalBreast.76331	0	.	59643056	59643930	0	1	874	0
chr18	59660701	59664928	REMC_LuminalBreast.76336	0	.	59660701	59664928	0	1	4227	0
chr18	59665008	59667226	REMC_LuminalBreast.76337	0	.	59665008	59667226	0	1	2218	0
chr18	59667336	59670376	REMC_LuminalBreast.76338	0	.	59667336	59670376	0	1	3040	0
chr18	59670489	59671876	REMC_LuminalBreast.76339	0	.	59670489	59671876	0	1	1387	0
chr18	59826977	59828154	REMC_LuminalBreast.76521	0	.	59826977	59828154	0	1	1177	0
chr18	59836804	59837831	REMC_MyoepithelialBreast.70963	0	.	59836804	59837831	0	1	1027	0
chr18	60031261	60078268	HIT000097254	0	-	60031261	60078268	0	3	2000,302,139	0,45171,46868
chr18	60031297	60078270	NR_033983	0	-	60031297	60078270	0	3	1964,302,141	0,45135,46832
chr18	61929818	61930509	K562.34040	0	.	61929818	61930509	0	1	691	0
chr18	62906100	62906896	H1_polyA+.89020	0	.	62906100	62906896	0	1	796	0
chr18	63272273	63302744	pHIT000031021	0	+	63272273	63302744	0	2	40,278	0,30193
chr18	63276141	63280927	H1_polyA+.89031	0	.	63276141	63280927	0	1	4786	0
chr18	63277284	63278189	REMC_LuminalBreast.76443	0	.	63277284	63278189	0	1	905	0
chr18	63281608	63283013	REMC_MyoepithelialBreast.70972	0	.	63281608	63283013	0	1	1405	0
chr18	63282072	63283696	REMC_LuminalBreast.76446	0	.	63282072	63283696	0	1	1624	0
chr18	63282129	63283976	REMC_BreastStem.38680	0	.	63282129	63283976	0	1	1847	0
chr18	63282139	63283516	H1_polyA+.89032	0	.	63282139	63283516	0	1	1377	0
chr18	63282714	63283332	H9_polyA+.34142	0	.	63282714	63283332	0	1	618	0
chr18	63293056	63295990	H1_polyA+.89040	0	.	63293056	63295990	0	1	2934	0
chr18	63294577	63295559	REMC_MyoepithelialBreast.70976	0	.	63294577	63295559	0	1	982	0
chr18	63294697	63297372	REMC_LuminalBreast.76449	0	.	63294697	63297372	0	1	2675	0
chr18	63295271	63295671	H9_polyA+.34143	0	.	63295271	63295671	0	1	400	0
chr18	63299992	63303183	HIT000026777	0	-	63299992	63303183	0	1	3191	0
chr18	63300033	63311080	H1_polyA+.89037	0	.	63300033	63311080	0	1	11047	0
chr18	63300754	63305890	REMC_MyoepithelialBreast.70979	0	.	63300754	63305890	0	1	5136	0
chr18	63301751	63303238	REMC_LuminalBreast.76451	0	.	63301751	63303238	0	1	1487	0
chr18	63302209	63303153	HeLa_polyA+_Chen.27807	0	.	63302209	63303153	0	1	944	0
chr18	63303401	63304140	REMC_LuminalBreast.76452	0	.	63303401	63304140	0	1	739	0
chr18	63303626	63304259	H1_rRNA-depleted_UCSD_REMC.66334	0	.	63303626	63304259	0	1	633	0
chr18	63311855	63313514	MIP101.53018	0	.	63311855	63313514	0	1	1659	0
chr18	63312855	63314557	REMC_LuminalBreast.76457	0	.	63312855	63314557	0	1	1702	0
chr18	63312980	63313737	IMR90_UCSD_REMC.38217	0	+	63312980	63313737	0	1	757	0
chr18	63313110	63313571	H9_polyA+.34146	0	.	63313110	63313571	0	1	461	0
chr18	64095971	64096410	HepG2_Caltech_ENCODE.28345	0	.	64095971	64096410	0	1	439	0
chr18	64095975	64096807	K562.34053	0	.	64095975	64096807	0	1	832	0
chr18	64095975	64096410	H1_polyA+.89036	0	.	64095975	64096410	0	1	435	0
chr18	64095980	64096419	H1_rRNA-depleted_UCSD_REMC.66357	0	.	64095980	64096419	0	1	439	0
chr18	64095983	64096412	HeLa_polyA+_Chen.27825	0	.	64095983	64096412	0	1	429	0
chr18	64096008	64096408	H9_polyA+.34152	0	.	64096008	64096408	0	1	400	0
chr18	64096012	64096751	B_Cells_Pritchard.2475443	0	.	64096012	64096751	0	1	739	0
chr18	64096014	64096411	REMC_MyoepithelialBreast.70987	0	.	64096014	64096411	0	1	397	0
chr18	64096014	64096415	REMC_LuminalBreast.76461	0	.	64096014	64096415	0	1	401	0
chr18	64096015	64096411	REMC_BreastStem.38694	0	.	64096015	64096411	0	1	396	0
chr18	64326923	64329215	B_cells_Cheung.148305	0	.	64326923	64329215	0	1	2292	0
chr18	64906547	64907380	prostate_carcinoma.75708	0	.	64906547	64907380	0	1	833	0
chr18	65781098	65781748	B_Cells_Pritchard.2478539	0	.	65781098	65781748	0	1	650	0
chr18	65788997	65789463	B_cells_Cheung.148486	0	.	65788997	65789463	0	1	466	0
chr18	65791783	65792244	B_Cells_Pritchard.2478573	0	.	65791783	65792244	0	1	461	0
chr18	65800701	65801262	B_cells_Cheung.148493	0	.	65800701	65801262	0	1	561	0
chr18	65800712	65801181	B_Cells_Pritchard.2478611	0	.	65800712	65801181	0	1	469	0
chr18	65801983	65802460	B_cells_Cheung.148496	0	.	65801983	65802460	0	1	477	0
chr18	65802048	65802407	B_Cells_Pritchard.2478617	0	.	65802048	65802407	0	1	359	0
chr18	65802644	65803211	B_Cells_Pritchard.2478619	0	.	65802644	65803211	0	1	567	0
chr18	65803268	65804862	B_cells_Cheung.148498	0	.	65803268	65804862	0	1	1594	0
chr18	65803339	65804306	B_Cells_Pritchard.2478621	0	.	65803339	65804306	0	1	967	0
chr18	65815169	65816308	B_cells_Cheung.148506	0	.	65815169	65816308	0	1	1139	0
chr18	65815461	65816453	B_Cells_Pritchard.2478659	0	.	65815461	65816453	0	1	992	0
chr18	65815576	65816443	melanoma_Garraway_short_term_cultures.52078	0	.	65815576	65816443	0	1	867	0
chr18	66104123	66104729	B_cells_Cheung.148596	0	.	66104123	66104729	0	1	606	0
chr18	66150641	66151166	B_Cells_Pritchard.2479025	0	.	66150641	66151166	0	1	525	0
chr18	66150696	66153534	melanoma_Garraway_short_term_cultures.52094	0	.	66150696	66153534	0	1	2838	0
chr18	66152956	66154154	B_cells_Cheung.148629	0	.	66152956	66154154	0	1	1198	0
chr18	66165213	66165716	REMC_LuminalBreast.76493	0	.	66165213	66165716	0	1	503	0
chr18	66166777	66170757	REMC_LuminalBreast.76495	0	.	66166777	66170757	0	1	3980	0
chr18	66166860	66167906	REMC_BreastStem.38701	0	.	66166860	66167906	0	1	1046	0
chr18	66167616	66169332	REMC_MyoepithelialBreast.70999	0	.	66167616	66169332	0	1	1716	0
chr18	66167640	66169280	HepG2_Caltech_ENCODE.28362	0	.	66167640	66169280	0	1	1640	0
chr18	66168233	66169171	MIP101.53072	0	.	66168233	66169171	0	1	938	0
chr18	66168549	66169107	A549_Myers.65315	0	.	66168549	66169107	0	1	558	0
chr18	66168796	66169857	melanoma_Garraway_short_term_cultures.52100	0	.	66168796	66169857	0	1	1061	0
chr18	66182997	66185452	REMC_LuminalBreast.76497	0	.	66182997	66185452	0	1	2455	0
chr18	66196416	66201034	REMC_LuminalBreast.76500	0	.	66196416	66201034	0	1	4618	0
chr18	66196416	66202122	REMC_LuminalBreast.76501	0	-	66196416	66202122	0	2	4229,790	0,4916
chr18	66198348	66202807	HIT000306902	0	-	66198348	66202807	0	3	2297,226,121	0,2984,4338
chr18	66199923	66200768	melanoma_Garraway_short_term_cultures.52101	0	.	66199923	66200768	0	1	845	0
chr18	66240929	66247214	REMC_LuminalBreast.76503	0	+	66240929	66247214	0	2	196,3162	0,3123
chr18	66448648	66469125	CD4_Plagnol_activated.49472	0	-	66448648	66469125	0	3	257,191,300	0,12100,20177
chr18	66448719	66469073	HIT000251309	0	-	66448719	66469073	0	3	186,227,203	0,12041,20151
chr18	66460098	66469392	CD4_Snyder.56803	0	-	66460098	66469392	0	2	841,567	0,8727
chr18	66550368	66550868	CD4_Plagnol_resting.48130	0	.	66550368	66550868	0	1	500	0
chr18	66821938	66822546	B_Cells_Pritchard.2480259	0	.	66821938	66822546	0	1	608	0
chr18	67338178	67397172	Rinn_00026212	0	-	67338178	67397172	0	5	1120,1269,84,99,151	0,2025,14250,28635,58843
chr18	68686829	68687366	brain_AmbionMAQC.33737	0	.	68686829	68687366	0	1	537	0
chr18	68687029	68687373	H1_polyA+.89224	0	.	68687029	68687373	0	1	344	0
chr18	68687063	68699614	Rinn_00026639	0	+	68687063	68699614	0	3	292,149,211	0,11237,12340
chr18	68687557	68688712	H1_polyA+.89225	0	.	68687557	68688712	0	1	1155	0
chr18	68687617	68688299	brain_AmbionMAQC.33738	0	.	68687617	68688299	0	1	682	0
chr18	68687708	68688023	H1_rRNA-depleted_UCSD_REMC.66417	0	.	68687708	68688023	0	1	315	0
chr18	68967291	68967797	K562.34076	0	.	68967291	68967797	0	1	506	0
chr18	68972570	68973585	BT20_Thompson.16568	0	.	68972570	68973585	0	1	1015	0
chr18	69067145	69067744	A549_Myers.65340	0	.	69067145	69067744	0	1	599	0
chr18	69067206	69067745	K562.34107	0	.	69067206	69067745	0	1	539	0
chr18	69067348	69067755	BT20_Thompson.16577	0	.	69067348	69067755	0	1	407	0
chr18	69143571	69144184	HeLa_polyA+_Chen.27831	0	.	69143571	69144184	0	1	613	0
chr18	69143591	69162217	H1_polyA+.89230	0	+	69143591	69162217	0	2	371,515	0,18111
chr18	69151290	69151685	HeLa_polyA+_Chen.27862	0	.	69151290	69151685	0	1	395	0
chr18	69175165	69210326	HeLa_polyA+_Chen.27837	0	+	69175165	69210326	0	4	850,126,1813,295	0,995,1789,34866
chr18	69190893	69191886	HeLa_polyA+_Chen.27845	0	.	69190893	69191886	0	1	993	0
chr18	69305113	69305461	IMR90_UCSD_REMC.38307	0	+	69305113	69305461	0	1	348	0
chr18	69453223	69504790	khalil_960	0	.	69453223	69504790	0	17	299,380,314,297,315,205,99,156,92,754,726,1766,306,443,251,340,353	0,743,1294,2582,6288,11328,20153,23263,25889,31639,32434,35282,39060,43056,43530,48861,51214
chr18	69979140	69981065	B_cells_Cheung.148740	0	.	69979140	69981065	0	1	1925	0
chr18	69997026	70002046	prostate_carcinoma.75766	0	.	69997026	70002046	0	1	5020	0
chr18	69997845	69999614	prostate_normal.44672	0	.	69997845	69999614	0	1	1769	0
chr18	69998068	70039819	pHIT000091817	0	-	69998068	70039819	0	4	134,172,81,69	0,2379,5077,41682
chr18	69998068	70003226	pHIT000031029	0	-	69998068	70003226	0	3	134,172,81	0,2379,5077
chr18	70115789	70116657	MIP101.53097	0	.	70115789	70116657	0	1	868	0
chr18	70115797	70116331	prostate_carcinoma.75774	0	.	70115797	70116331	0	1	534	0
chr18	70115805	70116993	H1_polyA+.89251	0	.	70115805	70116993	0	1	1188	0
chr18	70227662	70231436	HIT000095770	0	+	70227662	70231436	0	2	84,1632	0,2142
chr18	70908528	70909238	B_cells_Cheung.148795	0	.	70908528	70909238	0	1	710	0
chr18	70909697	70910196	B_Cells_Pritchard.2489239	0	.	70909697	70910196	0	1	499	0
chr18	70910869	70912096	prostate_carcinoma.75814	0	.	70910869	70912096	0	1	1227	0
chr18	70911048	70917218	B_Cells_Pritchard.2489245	0	.	70911048	70917218	0	1	6170	0
chr18	70911159	70915063	B_cells_Cheung.148796	0	.	70911159	70915063	0	1	3904	0
chr18	70912115	70913107	CD4_Plagnol_resting.48159	0	.	70912115	70913107	0	1	992	0
chr18	70912168	70914922	prostate_carcinoma.75816	0	.	70912168	70914922	0	1	2754	0
chr18	70912488	70913788	CD4_Plagnol_activated.49532	0	.	70912488	70913788	0	1	1300	0
chr18	70912855	70913758	prostate_normal.44702	0	.	70912855	70913758	0	1	903	0
chr18	70912977	70913850	BT474_Burge_Thompson.26185	0	.	70912977	70913850	0	1	873	0
chr18	70913169	70913828	CD4_Plagnol_resting.48160	0	.	70913169	70913828	0	1	659	0
chr18	70913614	70914855	REMC_MyoepithelialBreast.71035	0	.	70913614	70914855	0	1	1241	0
chr18	70913827	70914835	prostate_normal.44703	0	.	70913827	70914835	0	1	1008	0
chr18	70913952	70914808	CD4_Plagnol_resting.48162	0	.	70913952	70914808	0	1	856	0
chr18	70913999	70914797	MIP101.53120	0	.	70913999	70914797	0	1	798	0
chr18	70914000	70914833	CD4_Plagnol_activated.49533	0	.	70914000	70914833	0	1	833	0
chr18	70915869	70917193	prostate_carcinoma.75817	0	.	70915869	70917193	0	1	1324	0
chr18	70916613	70917191	B_cells_Cheung.148797	0	.	70916613	70917191	0	1	578	0
chr18	70917324	70918308	B_Cells_Pritchard.2489247	0	.	70917324	70918308	0	1	984	0
chr18	70927437	70927789	A549_Myers.65407	0	.	70927437	70927789	0	1	352	0
chr18	70929578	70930256	B_Cells_Pritchard.2489303	0	.	70929578	70930256	0	1	678	0
chr18	70944530	70947204	HIT000021086	0	-	70944530	70947204	0	1	2674	0
chr18	70966386	70976376	pHIT000118454	0	-	70966386	70976376	0	5	572,157,149,116,95	0,2042,6232,8536,9895
chr18	70966386	70976376	pHIT000118456	0	-	70966386	70976376	0	3	572,116,95	0,8536,9895
chr18	70970983	70972177	melanoma_Garraway_short_term_cultures.52139	0	.	70970983	70972177	0	1	1194	0
chr18	70971128	70971600	prostate_carcinoma.75819	0	.	70971128	70971600	0	1	472	0
chr18	70974531	70975871	prostate_carcinoma.75820	0	.	70974531	70975871	0	1	1340	0
chr18	70974531	70975871	prostate_carcinoma.75821	0	+	70974531	70975871	0	2	881,363	0,977
chr18	70974881	70975438	prostate_normal.44705	0	.	70974881	70975438	0	1	557	0
chr18	70975242	70976241	melanoma_Garraway_short_term_cultures.52140	0	.	70975242	70976241	0	1	999	0
chr18	70980870	70981467	melanoma_Garraway_short_term_cultures.52141	0	.	70980870	70981467	0	1	597	0
chr18	70981044	70981693	prostate_carcinoma.75825	0	.	70981044	70981693	0	1	649	0
chr18	70995337	71002978	khalil_964	0	.	70995337	71002978	0	8	44,70,362,71,30,389,297,415	0,3223,3418,3902,4605,5794,6870,7226
chr18	71006656	71012147	Rinn_00026566	0	-	71006656	71012147	0	2	3326,1522	0,3969
chr18	71007206	71012515	Rinn_00026567	0	-	71007206	71012515	0	3	1215,1201,1890	0,1575,3419
chr18	71008654	71009430	testes_Burge.40809	0	.	71008654	71009430	0	1	776	0
chr18	71017172	71018224	melanoma_Garraway_short_term_cultures.52142	0	.	71017172	71018224	0	1	1052	0
chr18	71017535	71018252	prostate_carcinoma.75901	0	.	71017535	71018252	0	1	717	0
chr18	71018314	71019915	prostate_carcinoma.75902	0	.	71018314	71019915	0	1	1601	0
chr18	71019014	71019680	melanoma_Garraway_short_term_cultures.52143	0	.	71019014	71019680	0	1	666	0
chr18	71030890	71031894	prostate_carcinoma.75904	0	.	71030890	71031894	0	1	1004	0
chr18	71173516	71174169	prostate_carcinoma.75846	0	.	71173516	71174169	0	1	653	0
chr18	71176246	71176997	prostate_carcinoma.75847	0	.	71176246	71176997	0	1	751	0
chr18	71202428	71203114	BT474_Burge_Thompson.26188	0	.	71202428	71203114	0	1	686	0
chr18	71296536	71297237	prostate_normal.44763	0	.	71296536	71297237	0	1	701	0
chr18	71296596	71297714	prostate_carcinoma.75848	0	.	71296596	71297714	0	1	1118	0
chr18	71304976	71307000	prostate_carcinoma.75850	0	.	71304976	71307000	0	1	2024	0
chr18	71305287	71306987	prostate_normal.44765	0	.	71305287	71306987	0	1	1700	0
chr18	71350304	71350673	B_Cells_Pritchard.2490489	0	.	71350304	71350673	0	1	369	0
chr18	71452471	71491156	pHIT000031048	0	-	71452471	71491156	0	4	529,130,47,44	0,26845,27988,38641
chr18	71567690	71568107	B_Cells_Pritchard.2490935	0	.	71567690	71568107	0	1	417	0
chr18	71893448	71897274	Rinn_00026570	0	-	71893448	71897274	0	2	3424,11	0,3815
chr18	71963940	71986213	HIT000097471	0	+	71963940	71986213	0	6	702,60,1308,138,88,514	0,946,2713,9939,21496,21759
chr18	71989695	71994751	khalil_967	0	.	71989695	71994751	0	2	51,411	0,4645
chr18	72088754	72100987	Rinn_00026374	0	+	72088754	72100987	0	6	33,235,111,106,193,229	0,3305,9011,9646,11325,12004
chr18	72112836	72113541	B_Cells_Pritchard.2492059	0	.	72112836	72113541	0	1	705	0
chr18	72112859	72113637	REMC_MyoepithelialBreast.71045	0	.	72112859	72113637	0	1	778	0
chr18	72112894	72113371	HepG2_Caltech_ENCODE.28392	0	.	72112894	72113371	0	1	477	0
chr18	72112899	72113621	H1_polyA+.89275	0	.	72112899	72113621	0	1	722	0
chr18	72152292	72154130	REMC_MyoepithelialBreast.71053	0	.	72152292	72154130	0	1	1838	0
chr18	72154272	72157255	REMC_MyoepithelialBreast.71054	0	.	72154272	72157255	0	1	2983	0
chr18	72180910	72182992	melanoma_Garraway_short_term_cultures.52151	0	.	72180910	72182992	0	1	2082	0
chr18	72181405	72187937	REMC_LuminalBreast.76560	0	.	72181405	72187937	0	1	6532	0
chr18	72183168	72187721	REMC_MyoepithelialBreast.71061	0	.	72183168	72187721	0	1	4553	0
chr18	72184734	72186526	REMC_BreastStem.38783	0	.	72184734	72186526	0	1	1792	0
chr18	72184762	72185950	H1_polyA+.89280	0	.	72184762	72185950	0	1	1188	0
chr18	72184818	72186949	melanoma_Garraway_short_term_cultures.52153	0	.	72184818	72186949	0	1	2131	0
chr18	72188848	72191098	REMC_LuminalBreast.76559	0	.	72188848	72191098	0	1	2250	0
chr18	72190191	72190790	REMC_MyoepithelialBreast.71062	0	.	72190191	72190790	0	1	599	0
chr18	72193353	72194501	H1_polyA+.89281	0	.	72193353	72194501	0	1	1148	0
chr18	72193844	72195867	REMC_BreastStem.38785	0	.	72193844	72195867	0	1	2023	0
chr18	72196133	72197535	B_cells_Cheung.148808	0	.	72196133	72197535	0	1	1402	0
chr18	72196442	72197499	H1_polyA+.89283	0	.	72196442	72197499	0	1	1057	0
chr18	72369446	72369925	prostate_normal.44774	0	.	72369446	72369925	0	1	479	0
chr18	72369598	72400771	Rinn_00026179	0	+	72369598	72400771	0	3	310,82,1853	0,1729,29320
chr18	72369599	72400771	ENST00000501504	0	+	72369599	72400771	0	3	309,81,1852	0,1729,29320
chr18	72369599	72400772	NR_015417	0	+	72369599	72400772	0	3	309,81,1853	0,1729,29320
chr18	72369599	72400771	HIT000018797	0	+	72369599	72400771	0	3	309,81,1852	0,1729,29320
chr18	72369644	72400815	B_cells_Cheung.148867	0	+	72369644	72400815	0	2	264,1896	0,29275
chr18	72369679	72400802	HIT000093832	0	+	72369679	72400802	0	3	229,81,1883	0,1649,29240
chr18	72375357	72376466	B_Cells_Pritchard.2492767	0	.	72375357	72376466	0	1	1109	0
chr18	72381501	72419429	B_Cells_Pritchard.2493393	0	+	72381501	72419429	0	5	122,86,866,974,54	0,3115,17418,18292,37874
chr18	72398938	72401111	REMC_BreastStem.38787	0	.	72398938	72401111	0	1	2173	0
chr18	72399072	72400654	HIT000388348	0	+	72399072	72400654	0	1	1582	0
chr18	72399800	72400745	HepG2_Caltech_ENCODE.28405	0	.	72399800	72400745	0	1	945	0
chr18	72399805	72400759	prostate_normal.44776	0	.	72399805	72400759	0	1	954	0
chr18	72399805	72400770	prostate_carcinoma.75887	0	.	72399805	72400770	0	1	965	0
chr18	72405480	72406237	REMC_MyoepithelialBreast.71101	0	.	72405480	72406237	0	1	757	0
chr18	72407350	72409728	REMC_MyoepithelialBreast.71105	0	.	72407350	72409728	0	1	2378	0
chr18	72409789	72412496	REMC_MyoepithelialBreast.71104	0	.	72409789	72412496	0	1	2707	0
chr18	72416265	72416917	REMC_MyoepithelialBreast.71107	0	.	72416265	72416917	0	1	652	0
chr18	72454125	72455212	REMC_MyoepithelialBreast.71108	0	.	72454125	72455212	0	1	1087	0
chr18	72454660	72455245	REMC_BreastStem.38791	0	.	72454660	72455245	0	1	585	0
chr18	72456117	72456823	REMC_MyoepithelialBreast.71109	0	.	72456117	72456823	0	1	706	0
chr18	72456155	72466877	Rinn_00026218	0	+	72456155	72466877	0	2	327,3177	0,7545
chr18	72456156	72466885	HIT000019812	0	-	72456156	72466885	0	2	326,3184	0,7545
chr18	72456156	72466877	ENST00000501193	0	+	72456156	72466877	0	2	326,3176	0,7545
chr18	72460249	72462129	prostate_carcinoma.75893	0	.	72460249	72462129	0	1	1880	0
chr18	72460721	72464504	HIT000047438	0	-	72460721	72464504	0	2	1418,803	0,2980
chr18	72461044	72464498	REMC_BreastStem.38792	0	+	72461044	72464498	0	3	1520,366,797	0,1874,2657
chr18	72461178	72462444	H1_polyA+.89288	0	.	72461178	72462444	0	1	1266	0
chr18	72461288	72462198	MCF7_Burge_Thompson.24365	0	.	72461288	72462198	0	1	910	0
chr18	72477678	72479227	REMC_BreastStem.38797	0	.	72477678	72479227	0	1	1549	0
chr18	72524122	72525977	MCF7_Burge_Thompson.24366	0	.	72524122	72525977	0	1	1855	0
chr18	72524678	72525906	ZR751_Thompson.18624	0	.	72524678	72525906	0	1	1228	0
chr18	72524818	72525615	prostate_carcinoma.75897	0	.	72524818	72525615	0	1	797	0
chr18	72526354	72527582	MCF7_Burge_Thompson.24367	0	.	72526354	72527582	0	1	1228	0
chr18	72530972	72534580	Rinn_00026196	0	+	72530972	72534580	0	2	1945,394	0,3214
chr18	72530973	72534580	ENST00000415242	0	+	72530973	72534580	0	2	1944,393	0,3214
chr18	72530973	72534580	HIT000046702	0	+	72530973	72534580	0	2	1944,393	0,3214
chr18	72531032	72532487	XR_039918	0	+	72531032	72532487	0	3	1073,85,296	0,1073,1159
chr18	72531033	72532487	HIT000388090	0	+	72531033	72532487	0	1	1454	0
chr18	72531033	72532486	HIT000388092	0	+	72531033	72532486	0	1	1453	0
chr18	72531127	72531521	XR_039920	0	+	72531127	72531521	0	1	394	0
chr18	72544973	72600323	pHIT000118467	0	-	72544973	72600323	0	4	170,122,439,343	0,32216,53782,55007
chr18	72598751	72600323	pHIT000118469	0	-	72598751	72600323	0	2	443,343	0,1229
chr18	72598987	72599404	BT474_Burge_Thompson.26206	0	.	72598987	72599404	0	1	417	0
chr18	72600157	72600629	A549_Myers.65449	0	.	72600157	72600629	0	1	472	0
chr18	72600530	72600890	melanoma_Garraway_short_term_cultures.52168	0	.	72600530	72600890	0	1	360	0
chr18	72624644	72625238	MIP101.53146	0	.	72624644	72625238	0	1	594	0
chr18	72628310	72629000	B_Cells_Pritchard.2493565	0	.	72628310	72629000	0	1	690	0
chr18	72632575	72633504	B_Cells_Pritchard.2493587	0	.	72632575	72633504	0	1	929	0
chr18	72648376	72651091	H1_polyA+.89319	0	.	72648376	72651091	0	1	2715	0
chr18	72648676	72650246	B_Cells_Pritchard.2493779	0	+	72648676	72650246	0	4	72,424,455,145	0,169,900,1425
chr18	72649327	72649829	liver_polyA+.103111	0	.	72649327	72649829	0	1	502	0
chr18	72650090	72651080	B_cells_Cheung.148901	0	.	72650090	72651080	0	1	990	0
chr18	72650120	72663251	prostate_normal.44791	0	-	72650120	72663251	0	4	51,64,88,933	0,6931,7578,12198
chr18	72650470	72651048	MIP101.53166	0	.	72650470	72651048	0	1	578	0
chr18	72651397	72655760	B_cells_Cheung.148902	0	.	72651397	72655760	0	1	4363	0
chr18	72651477	72652093	H1_polyA+.89320	0	.	72651477	72652093	0	1	616	0
chr18	72652878	72653352	CD4_Plagnol_resting.48182	0	.	72652878	72653352	0	1	474	0
chr18	72652899	72654232	H1_polyA+.89321	0	.	72652899	72654232	0	1	1333	0
chr18	72654375	72655734	H1_polyA+.89322	0	.	72654375	72655734	0	1	1359	0
chr18	72655030	72655457	prostate_carcinoma.76037	0	.	72655030	72655457	0	1	427	0
chr18	72657042	72663479	liver_polyA+.103113	0	-	72657042	72663479	0	3	73,88,520	0,656,5917
chr18	72657043	72663218	ZR751_Thompson.18628	0	-	72657043	72663218	0	3	72,88,259	0,655,5916
chr18	72657051	72663278	MDAMB231_Thompson.17067	0	-	72657051	72663278	0	2	735,319	0,5908
chr18	72657093	72663240	MCF10A_Thompson.16485	0	-	72657093	72663240	0	3	22,88,281	0,605,5866
chr18	72657141	72663257	REMC_MyoepithelialBreast.71120	0	-	72657141	72663257	0	2	645,298	0,5818
chr18	72657693	72663229	lymph_node_Burge.38326	0	-	72657693	72663229	0	3	93,33,270	0,766,5266
chr18	72657694	72663225	adipose_Burge.30096	0	-	72657694	72663225	0	2	92,266	0,5265
chr18	72657710	72663211	testes_Burge.40841	0	-	72657710	72663211	0	2	76,252	0,5249
chr18	72661726	72663319	K562.34116	0	.	72661726	72663319	0	1	1593	0
chr18	72661739	72663233	CD4_Plagnol_resting.48187	0	.	72661739	72663233	0	1	1494	0
chr18	72661745	72663334	brain_AmbionMAQC.33785	0	.	72661745	72663334	0	1	1589	0
chr18	72661750	72663254	CD4_Plagnol_activated.49555	0	.	72661750	72663254	0	1	1504	0
chr18	72661761	72663282	melanoma_Garraway_short_term_cultures.52171	0	.	72661761	72663282	0	1	1521	0
chr18	72661782	72663257	REMC_MyoepithelialBreast.71121	0	.	72661782	72663257	0	1	1475	0
chr18	72661790	72663235	REMC_LuminalBreast.76565	0	.	72661790	72663235	0	1	1445	0
chr18	72661807	72663240	BT474_Burge_Thompson.26210	0	.	72661807	72663240	0	1	1433	0
chr18	72662402	72663406	A549_Myers.65453	0	.	72662402	72663406	0	1	1004	0
chr18	72662829	72663230	MDAMB468_Thompson.18453	0	.	72662829	72663230	0	1	401	0
chr18	72662862	72663232	MCF7_Burge_Thompson.24372	0	.	72662862	72663232	0	1	370	0
chr18	72662887	72663479	liver_polyA+.103114	0	.	72662887	72663479	0	1	592	0
chr18	72813811	72816073	REMC_LuminalBreast.76585	0	.	72813811	72816073	0	1	2262	0
chr18	72813941	72816250	melanoma_Garraway_short_term_cultures.52192	0	.	72813941	72816250	0	1	2309	0
chr18	72814102	72816073	B_cells_Cheung.148969	0	.	72814102	72816073	0	1	1971	0
chr18	72814408	72815427	B_Cells_Pritchard.2493677	0	.	72814408	72815427	0	1	1019	0
chr18	72814872	72815629	CD4_Plagnol_resting.48189	0	.	72814872	72815629	0	1	757	0
chr18	72816478	72818509	B_Cells_Pritchard.2493681	0	.	72816478	72818509	0	1	2031	0
chr18	72816480	72818601	MIP101.53191	0	.	72816480	72818601	0	1	2121	0
chr18	72816492	72818603	B_cells_Cheung.148970	0	.	72816492	72818603	0	1	2111	0
chr18	72978184	72979400	H1_polyA+.89336	0	.	72978184	72979400	0	1	1216	0
chr18	73009918	73010331	A549_Myers.65508	0	.	73009918	73010331	0	1	413	0
chr18	73043557	73075708	pHIT000118487	0	-	73043557	73075708	0	2	278,109	0,32042
chr18	73050560	73050903	B_cells_Cheung.148996	0	.	73050560	73050903	0	1	343	0
chr18	73051059	73052581	B_Cells_Pritchard.2494295	0	.	73051059	73052581	0	1	1522	0
chr18	73115808	73116952	H1_polyA+.89361	0	.	73115808	73116952	0	1	1144	0
chr18	73115877	73116930	prostate_carcinoma.75914	0	.	73115877	73116930	0	1	1053	0
chr18	73276471	73315947	pHIT000118489	0	-	73276471	73315947	0	2	314,103	0,39373
chr18	73277460	73278199	H1_polyA+.89383	0	.	73277460	73278199	0	1	739	0
chr18	73282495	73284316	H1_polyA+.89385	0	.	73282495	73284316	0	1	1821	0
chr18	73295367	73296711	H1_polyA+.89374	0	.	73295367	73296711	0	1	1344	0
chr18	73299014	73301158	H1_polyA+.89376	0	.	73299014	73301158	0	1	2144	0
chr18	73305344	73307876	H1_polyA+.89379	0	.	73305344	73307876	0	1	2532	0
chr18	73326079	73328937	H1_polyA+.89394	0	.	73326079	73328937	0	1	2858	0
chr18	73339827	73340868	pHIT000118490	0	-	73339827	73340868	0	2	321,12	0,1029
chr18	73339853	73340954	H1_polyA+.89398	0	.	73339853	73340954	0	1	1101	0
chr18	73353281	73359169	pHIT000118491	0	-	73353281	73359169	0	3	200,97,453	0,633,5435
chr18	73358113	73359685	H1_polyA+.89403	0	.	73358113	73359685	0	1	1572	0
chr18	73359865	73361175	H1_polyA+.89404	0	.	73359865	73361175	0	1	1310	0
chr18	73367797	73368932	H1_polyA+.89405	0	.	73367797	73368932	0	1	1135	0
chr18	73387515	73388721	H1_polyA+.89413	0	.	73387515	73388721	0	1	1206	0
chr18	73388996	73390203	H1_polyA+.89411	0	.	73388996	73390203	0	1	1207	0
chr18	73389847	73390305	H9_polyA+.34229	0	.	73389847	73390305	0	1	458	0
chr18	73391159	73393595	H1_polyA+.89414	0	.	73391159	73393595	0	1	2436	0
chr18	73418536	73423293	H9_polyA+.34231	0	-	73418536	73423293	0	3	115,830,101	0,227,4656
chr18	73431185	73432492	H1_polyA+.89429	0	.	73431185	73432492	0	1	1307	0
chr18	73740821	73741398	A549_Myers.65514	0	.	73740821	73741398	0	1	577	0
chr18	73749866	73805104	K562.34156	0	-	73749866	73805104	0	4	8738,2898,285,44	0,9104,15631,55194
chr18	73763311	73764814	K562.34158	0	.	73763311	73764814	0	1	1503	0
chr18	73788836	73790838	K562.34165	0	.	73788836	73790838	0	1	2002	0
chr18	73798122	73798513	K562.34170	0	.	73798122	73798513	0	1	391	0
chr18	73810793	73834670	K562.34339	0	+	73810793	73834670	0	3	9779,9385,72	0,12664,23805
chr18	73811591	73817869	melanoma_Garraway_short_term_cultures.52238	0	.	73811591	73817869	0	1	6278	0
chr18	73812683	73831087	K562.34338	0	-	73812683	73831087	0	7	4936,1270,277,3763,186,96,51	0,7755,10697,11132,15072,18079,18353
chr18	73821986	73822573	melanoma_Garraway_short_term_cultures.52239	0	.	73821986	73822573	0	1	587	0
chr18	73823288	73826962	melanoma_Garraway_short_term_cultures.52240	0	.	73823288	73826962	0	1	3674	0
chr18	73903624	73904158	B_Cells_Pritchard.2495789	0	.	73903624	73904158	0	1	534	0
chr18	73941814	73966850	pHIT000118493	0	+	73941814	73966850	0	7	38,68,110,163,70,90,136	0,2328,2912,3681,4007,5159,24900
chr18	73998204	74001875	HIT000012025	0	+	73998204	74001875	0	2	120,2613	0,1058
chr18	74099091	74099633	prostate_carcinoma.75919	0	.	74099091	74099633	0	1	542	0
chr18	74099232	74099612	prostate_normal.44815	0	.	74099232	74099612	0	1	380	0
chr18	74104192	74104715	REMC_LuminalBreast.76643	0	.	74104192	74104715	0	1	523	0
chr18	74335642	74354298	pHIT000118495	0	+	74335642	74354298	0	4	104,123,115,151	0,3308,5951,18505
chr18	74335642	74366312	pHIT000118496	0	+	74335642	74366312	0	4	104,123,115,953	0,3308,5951,29717
chr18	74365359	74366418	pHIT000031073	0	+	74365359	74366418	0	1	1059	0
chr18	74365359	74382011	pHIT000118498	0	+	74365359	74382011	0	2	953,157	0,16495
chr18	74401370	74401930	B_Cells_Pritchard.2496767	0	.	74401370	74401930	0	1	560	0
chr18	74425425	74426098	B_cells_Cheung.149003	0	.	74425425	74426098	0	1	673	0
chr18	74425587	74512131	pHIT000118497	0	-	74425587	74512131	0	8	445,134,193,58,41,95,82,59	0,23825,72868,77592,78434,79421,82645,86485
chr18	74436661	74437027	pHIT000031075	0	+	74436661	74437027	0	1	366	0
chr18	74483961	74496598	pHIT000118500	0	+	74483961	74496598	0	3	161,87,535	0,9151,12102
chr18	74498404	74512131	pHIT000118502	0	-	74498404	74512131	0	6	244,58,41,95,82,59	0,4775,5617,6604,9828,13668
chr18	74537043	74537787	pHIT000118503	0	-	74537043	74537787	0	1	744	0
chr18	74564613	74565328	BT474_Burge_Thompson.26219	0	.	74564613	74565328	0	1	715	0
chr18	74564750	74565471	B_Cells_Pritchard.2497227	0	.	74564750	74565471	0	1	721	0
chr18	74592035	74592402	A549_Myers.65518	0	.	74592035	74592402	0	1	367	0
chr18	74656409	74659429	Rinn_00026382	0	+	74656409	74659429	0	2	1441,1489	0,1531
chr18	74669734	74670851	MIP101.53162	0	.	74669734	74670851	0	1	1117	0
chr18	74670757	74671107	A549_Myers.65520	0	.	74670757	74671107	0	1	350	0
chr18	74672529	74676063	MIP101.53163	0	-	74672529	74676063	0	2	2685,664	0,2870
chr18	74759455	74762003	pHIT000091821	0	+	74759455	74762003	0	3	280,123,75	0,479,2473
chr18	74759455	74761535	pHIT000118507	0	+	74759455	74761535	0	3	280,191,87	0,411,1993
chr18	74759455	74795023	pHIT000118505	0	+	74759455	74795023	0	6	280,123,75,140,27,171	0,479,2473,26640,34580,35397
chr18	74759455	74795023	pHIT000031076	0	+	74759455	74795023	0	5	280,123,140,27,171	0,479,26640,34580,35397
chr18	74825872	74826709	pHIT000031077	0	+	74825872	74826709	0	1	837	0
chr18	74837580	74840690	brain_AmbionMAQC.33794	0	-	74837580	74840690	0	5	837,141,107,285,917	0,962,1215,1870,2193
chr18	74837698	74840069	Rinn_00026584	0	-	74837698	74840069	0	2	719,1528	0,843
chr18	74837876	74840798	prostate_normal.44839	0	-	74837876	74840798	0	2	541,2256	0,666
chr18	74861991	74862883	brain_AmbionMAQC.33793	0	.	74861991	74862883	0	1	892	0
chr18	74902386	74902695	pHIT000118506	0	-	74902386	74902695	0	1	309	0
chr18	75241416	75244942	REMC_LuminalBreast.76705	0	.	75241416	75244942	0	1	3526	0
chr18	75242009	75244453	B_cells_Cheung.149143	0	.	75242009	75244453	0	1	2444	0
chr18	75242518	75243447	H1_polyA+.89468	0	.	75242518	75243447	0	1	929	0
chr18	75242716	75243866	CD4_Plagnol_activated.49560	0	.	75242716	75243866	0	1	1150	0
chr18	75243074	75244854	brain_AmbionMAQC.33796	0	.	75243074	75244854	0	1	1780	0
chr18	75244042	75245440	REMC_BreastStem.38813	0	.	75244042	75245440	0	1	1398	0
chr18	75244058	75244935	prostate_normal.44903	0	.	75244058	75244935	0	1	877	0
chr18	75244358	75244936	H1_polyA+.89469	0	.	75244358	75244936	0	1	578	0
chr18	75244511	75245093	B_cells_Cheung.149144	0	.	75244511	75245093	0	1	582	0
chr18	75244517	75247939	CD4_Plagnol_resting.48257	0	.	75244517	75247939	0	1	3422	0
chr18	75244639	75247949	CD4_Plagnol_activated.49562	0	.	75244639	75247949	0	1	3310	0
chr18	75245106	75254839	REMC_LuminalBreast.76706	0	-	75245106	75254839	0	2	618,6265	0,3468
chr18	75245155	75245773	B_cells_Cheung.149145	0	.	75245155	75245773	0	1	618	0
chr18	75246390	75247919	REMC_LuminalBreast.76708	0	.	75246390	75247919	0	1	1529	0
chr18	75246403	75247244	prostate_carcinoma.75975	0	.	75246403	75247244	0	1	841	0
chr18	75246466	75247090	prostate_normal.44907	0	.	75246466	75247090	0	1	624	0
chr18	75246713	75247263	brain_AmbionMAQC.33797	0	.	75246713	75247263	0	1	550	0
chr18	75247445	75247811	brain_AmbionMAQC.33798	0	.	75247445	75247811	0	1	366	0
chr18	75247489	75248078	B_Cells_Pritchard.2498749	0	+	75247489	75248078	0	1	589	0
chr18	75248030	75254839	REMC_LuminalBreast.76707	0	.	75248030	75254839	0	1	6809	0
chr18	75248086	75248968	CD4_Plagnol_resting.48216	0	.	75248086	75248968	0	1	882	0
chr18	75249063	75249460	brain_AmbionMAQC.33799	0	.	75249063	75249460	0	1	397	0
chr18	75249077	75250140	CD4_Plagnol_resting.48217	0	.	75249077	75250140	0	1	1063	0
chr18	75252791	75254984	CD4_Plagnol_activated.49564	0	.	75252791	75254984	0	1	2193	0
chr18	75252990	75253770	prostate_carcinoma.75979	0	.	75252990	75253770	0	1	780	0
chr18	75253528	75254716	CD4_Plagnol_resting.48392	0	.	75253528	75254716	0	1	1188	0
chr18	75254963	75255366	B_Cells_Pritchard.2498735	0	.	75254963	75255366	0	1	403	0
chr18	75254982	75255572	B_cells_Cheung.149152	0	.	75254982	75255572	0	1	590	0
chr18	75393395	75395811	REMC_LuminalBreast.76859	0	.	75393395	75395811	0	1	2416	0
chr18	75395943	75402797	REMC_LuminalBreast.76861	0	.	75395943	75402797	0	1	6854	0
chr18	75395943	75402797	REMC_LuminalBreast.76860	0	+	75395943	75402797	0	2	4874,1898	0,4956
chr18	75414342	75416354	REMC_LuminalBreast.76743	0	.	75414342	75416354	0	1	2012	0
chr18	75422385	75423680	REMC_LuminalBreast.76744	0	.	75422385	75423680	0	1	1295	0
chr18	75426736	75432293	REMC_LuminalBreast.76746	0	.	75426736	75432293	0	1	5557	0
chr18	75432714	75445049	REMC_LuminalBreast.76747	0	+	75432714	75445049	0	3	6376,1571,2569	0,6379,9766
chr18	75436716	75440470	prostate_carcinoma.76013	0	.	75436716	75440470	0	1	3754	0
chr18	75436716	75440470	prostate_carcinoma.76014	0	+	75436716	75440470	0	2	3227,201	0,3553
chr18	75437447	75440796	HIT000050685	0	+	75437447	75440796	0	1	3349	0
chr18	75437584	75438254	prostate_normal.44845	0	.	75437584	75438254	0	1	670	0
chr18	75438308	75439485	prostate_normal.44846	0	.	75438308	75439485	0	1	1177	0
chr18	75439050	75449999	HIT000026401	0	+	75439050	75449999	0	4	1358,218,220,2372	0,3430,7008,8577
chr18	75439715	75440176	prostate_normal.44847	0	.	75439715	75440176	0	1	461	0
chr18	75440838	75442239	prostate_normal.44848	0	.	75440838	75442239	0	1	1401	0
chr18	75440838	75446846	prostate_carcinoma.76015	0	.	75440838	75446846	0	1	6008	0
chr18	75440850	75441852	REMC_LuminalBreast.76749	0	.	75440850	75441852	0	1	1002	0
chr18	75441134	75441745	A549_Myers.65546	0	.	75441134	75441745	0	1	611	0
chr18	75441360	75442018	REMC_MyoepithelialBreast.71299	0	.	75441360	75442018	0	1	658	0
chr18	75442360	75444291	prostate_normal.44849	0	.	75442360	75444291	0	1	1931	0
chr18	75442485	75447749	Rinn_00026383	0	+	75442485	75447749	0	3	213,221,123	0,3572,5141
chr18	75442879	75443538	A549_Myers.65547	0	.	75442879	75443538	0	1	659	0
chr18	75443614	75443922	A549_Myers.65548	0	.	75443614	75443922	0	1	308	0
chr18	75444302	75446480	Rinn_00026588	0	-	75444302	75446480	0	3	259,200,304	0,848,1874
chr18	75445123	75446437	REMC_LuminalBreast.76748	0	.	75445123	75446437	0	1	1314	0
chr18	75445846	75499273	pHIT000118522	0	+	75445846	75499273	0	4	60,150,100,170	0,3013,52688,53257
chr18	75445891	75446381	B_Cells_Pritchard.2499085	0	.	75445891	75446381	0	1	490	0
chr18	75446896	75452867	prostate_carcinoma.76016	0	.	75446896	75452867	0	1	5971	0
chr18	75448033	75453818	REMC_LuminalBreast.76750	0	+	75448033	75453818	0	2	2664,2801	0,2984
chr18	75449761	75462696	H1_polyA+.89482	0	+	75449761	75462696	0	2	505,264	0,12671
chr18	75450392	75451224	prostate_normal.44852	0	.	75450392	75451224	0	1	832	0
chr18	75450589	75451338	B_Cells_Pritchard.2499103	0	.	75450589	75451338	0	1	749	0
chr18	75450795	75451973	H1_polyA+.89483	0	.	75450795	75451973	0	1	1178	0
chr18	75450892	75453818	REMC_LuminalBreast.76751	0	.	75450892	75453818	0	1	2926	0
chr18	75451274	75452756	prostate_normal.44853	0	.	75451274	75452756	0	1	1482	0
chr18	75458790	75460815	REMC_LuminalBreast.76754	0	.	75458790	75460815	0	1	2025	0
chr18	75471600	75476956	MIP101.53245	0	+	75471600	75476956	0	3	586,360,2779	0,1558,2577
chr18	75474118	75476956	MIP101.53244	0	.	75474118	75476956	0	1	2838	0
chr18	75475257	75475793	prostate_carcinoma.76017	0	.	75475257	75475793	0	1	536	0
chr18	75486125	75494066	B_Cells_Pritchard.2499235	0	.	75486125	75494066	0	1	7941	0
chr18	75487601	75493772	B_cells_Cheung.149187	0	.	75487601	75493772	0	1	6171	0
chr18	75488463	75499273	pHIT000118518	0	+	75488463	75499273	0	3	136,123,170	0,10048,10640
chr18	75490876	75492396	prostate_carcinoma.76019	0	.	75490876	75492396	0	1	1520	0
chr18	75494413	75494859	prostate_carcinoma.76021	0	.	75494413	75494859	0	1	446	0
chr18	75494616	75494979	H1_polyA+.89484	0	.	75494616	75494979	0	1	363	0
chr18	75495511	75496079	prostate_carcinoma.76023	0	.	75495511	75496079	0	1	568	0
chr18	75495771	75496623	B_Cells_Pritchard.2499245	0	.	75495771	75496623	0	1	852	0
chr18	75615698	75617611	HIT000043793	0	-	75615698	75617611	0	1	1913	0
chr18	75615864	75639206	pHIT000031091	0	-	75615864	75639206	0	3	224,70,81	0,416,23261
chr18	75616526	75617542	H9_polyA+.34254	0	.	75616526	75617542	0	1	1016	0
chr18	75616794	75617216	lymph_node_Burge.38393	0	.	75616794	75617216	0	1	422	0
chr18	75616965	75617604	REMC_BreastStem.38845	0	.	75616965	75617604	0	1	639	0
chr18	75617034	75617532	prostate_normal.44876	0	.	75617034	75617532	0	1	498	0
chr18	75626848	75627954	REMC_MyoepithelialBreast.71322	0	.	75626848	75627954	0	1	1106	0
chr18	75627727	75628032	B_Cells_Pritchard.2499539	0	.	75627727	75628032	0	1	305	0
chr18	75633205	75633649	A549_Myers.65567	0	.	75633205	75633649	0	1	444	0
chr18	75643803	75670781	pHIT000118526	0	+	75643803	75670781	0	7	156,190,492,110,178,28,2038	0,3491,5374,6120,9808,16276,24940
chr18	75647030	75653789	pHIT000118528	0	+	75647030	75653789	0	3	454,492,192	0,2147,6567
chr18	75649903	75650503	A549_Myers.65568	0	.	75649903	75650503	0	1	600	0
chr18	75659333	75659721	B_Cells_Pritchard.2499637	0	.	75659333	75659721	0	1	388	0
chr18	75659774	75660595	B_cells_Cheung.149209	0	.	75659774	75660595	0	1	821	0
chr18	75660260	75663069	B_Cells_Pritchard.2499641	0	.	75660260	75663069	0	1	2809	0
chr18	75660773	75663919	B_cells_Cheung.149210	0	.	75660773	75663919	0	1	3146	0
chr18	75663169	75663897	B_Cells_Pritchard.2499643	0	.	75663169	75663897	0	1	728	0
chr18	75664139	75665794	B_cells_Cheung.149211	0	.	75664139	75665794	0	1	1655	0
chr18	75664151	75665744	B_Cells_Pritchard.2499645	0	.	75664151	75665744	0	1	1593	0
chr18	75666177	75667694	B_cells_Cheung.149212	0	.	75666177	75667694	0	1	1517	0
chr18	75667733	75668775	B_Cells_Pritchard.2499653	0	.	75667733	75668775	0	1	1042	0
chr18	75667861	75668756	B_cells_Cheung.149213	0	.	75667861	75668756	0	1	895	0
chr18	75667952	75668395	testes_Burge.40915	0	.	75667952	75668395	0	1	443	0
chr18	75670512	75671607	B_Cells_Pritchard.2499659	0	.	75670512	75671607	0	1	1095	0
chr18	75670603	75671908	B_cells_Cheung.149214	0	.	75670603	75671908	0	1	1305	0
chr18	75676465	75676884	B_Cells_Pritchard.2499693	0	.	75676465	75676884	0	1	419	0
chr18	75677143	75677595	B_Cells_Pritchard.2499697	0	.	75677143	75677595	0	1	452	0
chr18	75677681	75678135	A549_Myers.65570	0	.	75677681	75678135	0	1	454	0
chr18	75711977	75714750	REMC_MyoepithelialBreast.71323	0	.	75711977	75714750	0	1	2773	0
chr18	75712156	75714800	REMC_BreastStem.38848	0	.	75712156	75714800	0	1	2644	0
chr18	75715562	75718026	REMC_MyoepithelialBreast.71326	0	.	75715562	75718026	0	1	2464	0
chr18	75716018	75717035	B_Cells_Pritchard.2499843	0	.	75716018	75717035	0	1	1017	0
chr18	75716578	75717925	REMC_BreastStem.38849	0	.	75716578	75717925	0	1	1347	0
chr18	75761858	75762226	liver_polyA+.103307	0	.	75761858	75762226	0	1	368	0
chr18	75813612	75817313	Rinn_00026386	0	+	75813612	75817313	0	2	455,3051	0,650
chr18	75814868	75815431	brain_AmbionMAQC.33834	0	.	75814868	75815431	0	1	563	0
chr18	75815840	75816691	MeWo_Garraway.28006	0	.	75815840	75816691	0	1	851	0
chr18	75815917	75817061	H1_polyA+.89507	0	.	75815917	75817061	0	1	1144	0
chr18	75816821	75817923	B_cells_Cheung.149302	0	.	75816821	75817923	0	1	1102	0
chr18	75822778	75823245	BT474_Burge_Thompson.26238	0	.	75822778	75823245	0	1	467	0
chr18	75865896	75866691	REMC_LuminalBreast.76816	0	.	75865896	75866691	0	1	795	0
chr18	75868574	75870049	REMC_LuminalBreast.76818	0	.	75868574	75870049	0	1	1475	0
chr18	75868628	75871794	REMC_MyoepithelialBreast.71363	0	.	75868628	75871794	0	1	3166	0
chr18	75870598	75872525	B_cells_Cheung.149333	0	.	75870598	75872525	0	1	1927	0
chr18	75875136	75876081	REMC_LuminalBreast.76821	0	.	75875136	75876081	0	1	945	0
chr18	75875553	75876326	REMC_MyoepithelialBreast.71367	0	.	75875553	75876326	0	1	773	0
chr18	75879041	75879417	REMC_LuminalBreast.76822	0	.	75879041	75879417	0	1	376	0
chr18	75879699	75881632	REMC_MyoepithelialBreast.71368	0	.	75879699	75881632	0	1	1933	0
chr18	75880825	75881667	REMC_LuminalBreast.76824	0	.	75880825	75881667	0	1	842	0
chr18	75882440	75882867	REMC_LuminalBreast.76825	0	.	75882440	75882867	0	1	427	0
chr18	75885965	75888495	REMC_MyoepithelialBreast.71371	0	.	75885965	75888495	0	1	2530	0
chr18	75886776	75887391	B_cells_Cheung.149335	0	.	75886776	75887391	0	1	615	0
chr18	75890225	75891804	REMC_MyoepithelialBreast.71373	0	.	75890225	75891804	0	1	1579	0
chr18	75891933	75893554	REMC_MyoepithelialBreast.71374	0	.	75891933	75893554	0	1	1621	0
chr18	75891940	75892464	B_Cells_Pritchard.2500061	0	.	75891940	75892464	0	1	524	0
chr18	75919116	75919921	HeLa_polyA+_Chen.27914	0	.	75919116	75919921	0	1	805	0
chr18	75919705	75920669	HepG2_Caltech_ENCODE.28472	0	.	75919705	75920669	0	1	964	0
chr18	75919804	75920688	T47D_Burge_Thompson.22468	0	.	75919804	75920688	0	1	884	0
chr18	75919836	75922043	REMC_MyoepithelialBreast.71382	0	.	75919836	75922043	0	1	2207	0
chr18	75919852	75920743	B_Cells_Pritchard.2500095	0	.	75919852	75920743	0	1	891	0
chr18	75926412	75928646	B_Cells_Pritchard.2500115	0	.	75926412	75928646	0	1	2234	0
chr18	75926731	75927280	A549_Myers.65598	0	.	75926731	75927280	0	1	549	0
chr18	75935487	75936194	prostate_carcinoma.76283	0	.	75935487	75936194	0	1	707	0
chr18	75936605	75937424	pHIT000031102	0	+	75936605	75937424	0	2	170,589	0,230
chr18	75942840	75943665	MIP101.53322	0	.	75942840	75943665	0	1	825	0
chr18	75942844	75943643	prostate_carcinoma.76285	0	.	75942844	75943643	0	1	799	0
chr19	111164	147755	pHIT000118543	0	+	111164	147755	0	5	26,97,258,232,210	0,33206,33553,33993,36381
chr19	116010	146398	XR_038092	0	+	116010	146398	0	5	166,651,37,193,1344	0,28162,28813,28851,29044
chr19	116011	147945	pHIT000118541	0	+	116011	147945	0	6	165,261,258,232,210,56	0,28359,28706,29146,31534,31878
chr19	144287	147965	pHIT000094149	0	+	144287	147965	0	4	180,258,182,76	0,430,1977,3602
chr19	144586	147965	pHIT000031107	0	+	144586	147965	0	4	45,258,182,76	0,131,1678,3303
chr19	203378	204340	REMC_LuminalBreast.76866	0	.	203378	204340	0	1	962	0
chr19	216936	218825	REMC_MyoepithelialBreast.71432	0	.	216936	218825	0	1	1889	0
chr19	217265	218772	B_cells_Cheung.149344	0	.	217265	218772	0	1	1507	0
chr19	217655	218779	MIP101.53355	0	.	217655	218779	0	1	1124	0
chr19	218109	218546	A549_Myers.65634	0	.	218109	218546	0	1	437	0
chr19	218120	218777	H1_polyA+.89532	0	.	218120	218777	0	1	657	0
chr19	218969	219645	REMC_MyoepithelialBreast.71433	0	.	218969	219645	0	1	676	0
chr19	226255	227087	MIP101.53356	0	.	226255	227087	0	1	832	0
chr19	226470	227843	REMC_MyoepithelialBreast.71435	0	.	226470	227843	0	1	1373	0
chr19	227199	228608	H1_polyA+.89533	0	.	227199	228608	0	1	1409	0
chr19	244606	246786	B_Cells_Pritchard.2500895	0	-	244606	246786	0	5	481,522,204,165,155	0,544,1138,1438,2025
chr19	244815	245396	B_cells_Cheung.149349	0	.	244815	245396	0	1	581	0
chr19	245448	246262	B_cells_Cheung.149350	0	.	245448	246262	0	1	814	0
chr19	245780	248276	REMC_MyoepithelialBreast.71440	0	.	245780	248276	0	1	2496	0
chr19	246484	248075	H1_polyA+.89542	0	.	246484	248075	0	1	1591	0
chr19	247133	248071	B_cells_Cheung.149351	0	.	247133	248071	0	1	938	0
chr19	252214	253794	H1_polyA+.89543	0	.	252214	253794	0	1	1580	0
chr19	252796	253556	REMC_MyoepithelialBreast.71441	0	.	252796	253556	0	1	760	0
chr19	308215	308883	MCF7_Burge_Thompson.24413	0	.	308215	308883	0	1	668	0
chr19	308383	308882	melanoma_Garraway_short_term_cultures.52344	0	.	308383	308882	0	1	499	0
chr19	308493	308892	B_cells_Cheung.149373	0	.	308493	308892	0	1	399	0
chr19	328605	329246	prostate_carcinoma.76206	0	.	328605	329246	0	1	641	0
chr19	328624	329759	B_cells_Cheung.149382	0	.	328624	329759	0	1	1135	0
chr19	328708	329338	prostate_normal.44970	0	.	328708	329338	0	1	630	0
chr19	334974	335718	B_cells_Cheung.149383	0	.	334974	335718	0	1	744	0
chr19	343201	343985	H1_polyA+.89552	0	.	343201	343985	0	1	784	0
chr19	344096	344583	H1_polyA+.89553	0	.	344096	344583	0	1	487	0
chr19	346476	347121	H1_polyA+.89554	0	.	346476	347121	0	1	645	0
chr19	346506	347075	REMC_BreastStem.38916	0	.	346506	347075	0	1	569	0
chr19	347792	349769	H1_polyA+.89555	0	.	347792	349769	0	1	1977	0
chr19	348117	349318	REMC_BreastStem.38917	0	.	348117	349318	0	1	1201	0
chr19	352293	354761	H1_polyA+.89559	0	.	352293	354761	0	1	2468	0
chr19	354341	354751	A549_Myers.65651	0	.	354341	354751	0	1	410	0
chr19	361215	361730	brain_AmbionMAQC.33889	0	.	361215	361730	0	1	515	0
chr19	362208	364248	REMC_LuminalBreast.76885	0	.	362208	364248	0	1	2040	0
chr19	362223	363210	brain_AmbionMAQC.33890	0	.	362223	363210	0	1	987	0
chr19	362325	363911	H1_polyA+.89556	0	.	362325	363911	0	1	1586	0
chr19	362333	363041	prostate_normal.45075	0	.	362333	363041	0	1	708	0
chr19	362573	364116	HepG2_Caltech_ENCODE.28486	0	.	362573	364116	0	1	1543	0
chr19	362684	364161	prostate_carcinoma.76218	0	.	362684	364161	0	1	1477	0
chr19	363423	364193	brain_AmbionMAQC.33891	0	.	363423	364193	0	1	770	0
chr19	364449	365389	brain_AmbionMAQC.33892	0	.	364449	365389	0	1	940	0
chr19	364853	365468	H1_polyA+.89562	0	.	364853	365468	0	1	615	0
chr19	427073	437551	HepG2_Caltech_ENCODE.28506	0	-	427073	437551	0	2	47,1720	0,8758
chr19	427514	430569	H1_polyA+.89590	0	.	427514	430569	0	1	3055	0
chr19	428769	430472	HepG2_Caltech_ENCODE.28511	0	.	428769	430472	0	1	1703	0
chr19	428786	429762	brain_AmbionMAQC.33896	0	.	428786	429762	0	1	976	0
chr19	428795	430455	prostate_carcinoma.76207	0	.	428795	430455	0	1	1660	0
chr19	429389	430404	B_Cells_Pritchard.2501309	0	.	429389	430404	0	1	1015	0
chr19	429817	430475	brain_AmbionMAQC.33897	0	.	429817	430475	0	1	658	0
chr19	429917	430563	B_cells_Cheung.149399	0	.	429917	430563	0	1	646	0
chr19	430835	432401	H1_polyA+.89591	0	.	430835	432401	0	1	1566	0
chr19	430979	431805	melanoma_Garraway_short_term_cultures.52359	0	.	430979	431805	0	1	826	0
chr19	432506	437552	H1_polyA+.89592	0	.	432506	437552	0	1	5046	0
chr19	433081	435222	B_Cells_Pritchard.2501323	0	.	433081	435222	0	1	2141	0
chr19	433152	435258	B_cells_Cheung.149400	0	.	433152	435258	0	1	2106	0
chr19	433177	434212	prostate_carcinoma.76208	0	.	433177	434212	0	1	1035	0
chr19	433214	433766	K562.34211	0	.	433214	433766	0	1	552	0
chr19	433364	433839	H9_polyA+.34294	0	.	433364	433839	0	1	475	0
chr19	435382	439310	HepG2_Caltech_ENCODE.28507	0	+	435382	439310	0	2	512,1305	0,2623
chr19	435406	437667	B_cells_Cheung.149403	0	.	435406	437667	0	1	2261	0
chr19	435410	437660	B_Cells_Pritchard.2501333	0	-	435410	437660	0	1	2250	0
chr19	435420	437479	prostate_carcinoma.76209	0	.	435420	437479	0	1	2059	0
chr19	435427	436735	HeLa_polyA+_Chen.27928	0	.	435427	436735	0	1	1308	0
chr19	435439	437454	MIP101.53445	0	.	435439	437454	0	1	2015	0
chr19	435470	437427	prostate_normal.44991	0	.	435470	437427	0	1	1957	0
chr19	435481	437662	K562.34214	0	.	435481	437662	0	1	2181	0
chr19	435483	436974	melanoma_Garraway_short_term_cultures.52361	0	.	435483	436974	0	1	1491	0
chr19	435696	437116	BT20_Thompson.16629	0	.	435696	437116	0	1	1420	0
chr19	436600	437310	H9_polyA+.34296	0	.	436600	437310	0	1	710	0
chr19	436826	437544	HeLa_polyA+_Chen.27929	0	.	436826	437544	0	1	718	0
chr19	436983	437523	REMC_MyoepithelialBreast.71458	0	.	436983	437523	0	1	540	0
chr19	437875	439288	H1_polyA+.89593	0	.	437875	439288	0	1	1413	0
chr19	437892	438569	REMC_LuminalBreast.76896	0	.	437892	438569	0	1	677	0
chr19	437914	438574	prostate_carcinoma.76211	0	.	437914	438574	0	1	660	0
chr19	438010	438790	B_cells_Cheung.149402	0	.	438010	438790	0	1	780	0
chr19	438029	438626	H9_polyA+.34297	0	.	438029	438626	0	1	597	0
chr19	438037	438565	MIP101.53446	0	.	438037	438565	0	1	528	0
chr19	438128	438683	K562.34215	0	.	438128	438683	0	1	555	0
chr19	438196	438771	HeLa_polyA+_Chen.27930	0	.	438196	438771	0	1	575	0
chr19	438953	439316	H1_rRNA-depleted_UCSD_REMC.66733	0	.	438953	439316	0	1	363	0
chr19	444017	445292	B_Cells_Pritchard.2501343	0	+	444017	445292	0	1	1275	0
chr19	444077	445144	brain_AmbionMAQC.33900	0	.	444077	445144	0	1	1067	0
chr19	444166	444986	MIP101.53448	0	.	444166	444986	0	1	820	0
chr19	444376	444809	A549_Myers.65666	0	.	444376	444809	0	1	433	0
chr19	444480	444934	prostate_carcinoma.76294	0	.	444480	444934	0	1	454	0
chr19	444500	445065	HeLa_polyA+_Chen.27932	0	.	444500	445065	0	1	565	0
chr19	471758	474151	REMC_LuminalBreast.76899	0	.	471758	474151	0	1	2393	0
chr19	471794	472530	CD4_Plagnol_activated.49682	0	.	471794	472530	0	1	736	0
chr19	471810	472617	H1_polyA+.89611	0	.	471810	472617	0	1	807	0
chr19	471812	472538	B_cells_Cheung.149420	0	.	471812	472538	0	1	726	0
chr19	473369	474270	REMC_MyoepithelialBreast.71462	0	.	473369	474270	0	1	901	0
chr19	473430	474145	HepG2_Caltech_ENCODE.28526	0	.	473430	474145	0	1	715	0
chr19	473565	474138	B_cells_Cheung.149422	0	.	473565	474138	0	1	573	0
chr19	473584	474328	H1_polyA+.89613	0	.	473584	474328	0	1	744	0
chr19	473629	474168	CD4_Plagnol_resting.48388	0	.	473629	474168	0	1	539	0
chr19	473634	474159	prostate_carcinoma.76306	0	.	473634	474159	0	1	525	0
chr19	473637	474159	prostate_normal.45003	0	.	473637	474159	0	1	522	0
chr19	474934	475773	HepG2_Caltech_ENCODE.28527	0	.	474934	475773	0	1	839	0
chr19	474989	475661	CD4_Plagnol_resting.48389	0	.	474989	475661	0	1	672	0
chr19	475001	475690	B_cells_Cheung.149423	0	.	475001	475690	0	1	689	0
chr19	475005	475839	B_Cells_Pritchard.2501601	0	+	475005	475839	0	1	834	0
chr19	475018	475727	prostate_carcinoma.76307	0	.	475018	475727	0	1	709	0
chr19	476084	476808	HepG2_Caltech_ENCODE.28528	0	.	476084	476808	0	1	724	0
chr19	476185	476669	prostate_carcinoma.76308	0	.	476185	476669	0	1	484	0
chr19	476193	476769	B_cells_Cheung.149424	0	.	476193	476769	0	1	576	0
chr19	476331	476679	MCF7_Burge_Thompson.24422	0	.	476331	476679	0	1	348	0
chr19	476860	477557	H1_polyA+.89614	0	.	476860	477557	0	1	697	0
chr19	477504	478239	HepG2_Caltech_ENCODE.28529	0	.	477504	478239	0	1	735	0
chr19	480387	480977	HepG2_Caltech_ENCODE.28531	0	.	480387	480977	0	1	590	0
chr19	505837	506278	B_Cells_Pritchard.2501389	0	.	505837	506278	0	1	441	0
chr19	507098	508433	HepG2_Caltech_ENCODE.28570	0	.	507098	508433	0	1	1335	0
chr19	507560	508364	CD4_Plagnol_resting.48391	0	.	507560	508364	0	1	804	0
chr19	507785	508394	B_Cells_Pritchard.2501397	0	.	507785	508394	0	1	609	0
chr19	509571	510385	B_Cells_Pritchard.2501405	0	.	509571	510385	0	1	814	0
chr19	509988	510437	B_cells_Cheung.149437	0	.	509988	510437	0	1	449	0
chr19	510464	511050	HeLa_polyA+_Chen.27950	0	.	510464	511050	0	1	586	0
chr19	510623	510939	B_Cells_Pritchard.2501407	0	.	510623	510939	0	1	316	0
chr19	513067	514742	HeLa_polyA+_Chen.27953	0	.	513067	514742	0	1	1675	0
chr19	513083	514998	B_cells_Cheung.149513	0	.	513083	514998	0	1	1915	0
chr19	513111	513810	melanoma_Garraway_short_term_cultures.52371	0	.	513111	513810	0	1	699	0
chr19	513120	514704	B_Cells_Pritchard.2501415	0	-	513120	514704	0	2	814,37	0,1547
chr19	513155	513980	BT20_Thompson.16684	0	.	513155	513980	0	1	825	0
chr19	513274	513841	prostate_carcinoma.76317	0	.	513274	513841	0	1	567	0
chr19	513280	513725	H9_polyA+.34347	0	.	513280	513725	0	1	445	0
chr19	514100	514585	prostate_carcinoma.76315	0	.	514100	514585	0	1	485	0
chr19	514124	514559	H9_polyA+.34348	0	.	514124	514559	0	1	435	0
chr19	514126	514585	B_Cells_Pritchard.2501417	0	-	514126	514585	0	1	459	0
chr19	517584	519373	REMC_LuminalBreast.76907	0	.	517584	519373	0	1	1789	0
chr19	517858	518633	ZR751_Thompson.18695	0	.	517858	518633	0	1	775	0
chr19	535743	536312	B_Cells_Pritchard.2502361	0	+	535743	536312	0	1	569	0
chr19	535936	538602	REMC_LuminalBreast.76917	0	.	535936	538602	0	1	2666	0
chr19	536451	537030	B_Cells_Pritchard.2502365	0	+	536451	537030	0	1	579	0
chr19	536725	538369	REMC_MyoepithelialBreast.71471	0	.	536725	538369	0	1	1644	0
chr19	537142	538307	B_Cells_Pritchard.2502367	0	+	537142	538307	0	1	1165	0
chr19	538840	539728	REMC_LuminalBreast.76918	0	.	538840	539728	0	1	888	0
chr19	584957	587076	liver_polyA+.103492	0	+	584957	587076	0	2	340,157	0,1962
chr19	585819	586690	B_cells_Cheung.149502	0	.	585819	586690	0	1	871	0
chr19	585849	586564	REMC_LuminalBreast.76931	0	.	585849	586564	0	1	715	0
chr19	586108	586748	B_Cells_Pritchard.2502465	0	+	586108	586748	0	1	640	0
chr19	586327	586685	prostate_carcinoma.76327	0	.	586327	586685	0	1	358	0
chr19	587954	589069	B_cells_Cheung.149505	0	.	587954	589069	0	1	1115	0
chr19	587977	589068	B_Cells_Pritchard.2502475	0	+	587977	589068	0	1	1091	0
chr19	587993	588943	REMC_MyoepithelialBreast.71480	0	.	587993	588943	0	1	950	0
chr19	589259	589872	REMC_LuminalBreast.76932	0	.	589259	589872	0	1	613	0
chr19	614481	619063	HIT000020886	0	+	614481	619063	0	2	1030,852	0,3730
chr19	616749	617184	B_cells_Cheung.149538	0	.	616749	617184	0	1	435	0
chr19	617675	618226	prostate_carcinoma.76337	0	.	617675	618226	0	1	551	0
chr19	617767	618237	B_cells_Cheung.149539	0	.	617767	618237	0	1	470	0
chr19	617793	618221	B_Cells_Pritchard.2502077	0	-	617793	618221	0	1	428	0
chr19	617835	618223	MIP101.53471	0	.	617835	618223	0	1	388	0
chr19	618427	619625	B_cells_Cheung.149540	0	.	618427	619625	0	1	1198	0
chr19	618440	618976	BT20_Thompson.16653	0	.	618440	618976	0	1	536	0
chr19	618473	618888	B_Cells_Pritchard.2502079	0	+	618473	618888	0	1	415	0
chr19	618577	618936	prostate_carcinoma.76338	0	.	618577	618936	0	1	359	0
chr19	620917	622244	B_cells_Cheung.149542	0	.	620917	622244	0	1	1327	0
chr19	622579	623118	B_cells_Cheung.149543	0	.	622579	623118	0	1	539	0
chr19	623519	624158	B_cells_Cheung.149545	0	.	623519	624158	0	1	639	0
chr19	623831	624155	B_Cells_Pritchard.2502113	0	-	623831	624155	0	1	324	0
chr19	653246	653842	B_cells_Cheung.149520	0	.	653246	653842	0	1	596	0
chr19	654168	655889	A549_Myers.65818	0	+	654168	655889	0	2	84,1009	0,712
chr19	723014	723491	HeLa_polyA+_Chen.27990	0	.	723014	723491	0	1	477	0
chr19	726107	726777	HeLa_polyA+_Chen.27992	0	.	726107	726777	0	1	670	0
chr19	727499	728000	HeLa_polyA+_Chen.27993	0	.	727499	728000	0	1	501	0
chr19	729800	730784	HeLa_polyA+_Chen.27994	0	.	729800	730784	0	1	984	0
chr19	730224	730715	prostate_carcinoma.76289	0	.	730224	730715	0	1	491	0
chr19	730296	730707	HeLa_polyA-_Chen.15157	0	.	730296	730707	0	1	411	0
chr19	731888	736325	HeLa_polyA+_Chen.28002	0	-	731888	736325	0	2	385,3122	0,1315
chr19	732001	734355	T47D_Burge_Thompson.22526	0	-	732001	734355	0	2	233,1152	0,1202
chr19	732005	733604	Rinn_00027152	0	-	732005	733604	0	2	232,402	0,1197
chr19	732566	737255	Rinn_00026862	0	+	732566	737255	0	2	1764,1442	0,3247
chr19	732853	733702	HeLa_polyA-_Chen.15158	0	.	732853	733702	0	1	849	0
chr19	733090	733667	MCF7_Burge_Thompson.25011	0	.	733090	733667	0	1	577	0
chr19	733766	734421	REMC_LuminalBreast.76944	0	.	733766	734421	0	1	655	0
chr19	733790	734341	H9_polyA+.34342	0	.	733790	734341	0	1	551	0
chr19	734978	736061	H1_polyA+.89696	0	.	734978	736061	0	1	1083	0
chr19	735050	736021	T47D_Burge_Thompson.22525	0	.	735050	736021	0	1	971	0
chr19	735637	735948	HeLa_Bartel_miR-1_12hr.24587	0	.	735637	735948	0	1	311	0
chr19	735707	736025	H9_polyA+.34343	0	.	735707	736025	0	1	318	0
chr19	737395	739155	H1_polyA+.89699	0	.	737395	739155	0	1	1760	0
chr19	737401	739162	HeLa_polyA+_Chen.27996	0	.	737401	739162	0	1	1761	0
chr19	738639	739100	MIP101.53511	0	.	738639	739100	0	1	461	0
chr19	739334	741185	HeLa_polyA+_Chen.27999	0	.	739334	741185	0	1	1851	0
chr19	739360	741168	H1_polyA+.89700	0	.	739360	741168	0	1	1808	0
chr19	739916	740868	MDAMB468_Thompson.18515	0	.	739916	740868	0	1	952	0
chr19	739932	740403	HepG2_Caltech_ENCODE.28582	0	.	739932	740403	0	1	471	0
chr19	741841	742457	HeLa_polyA+_Chen.27998	0	.	741841	742457	0	1	616	0
chr19	742007	742324	A549_Myers.65726	0	.	742007	742324	0	1	317	0
chr19	743172	743858	MIP101.53512	0	.	743172	743858	0	1	686	0
chr19	743546	743895	HeLa_polyA+_Chen.28000	0	.	743546	743895	0	1	349	0
chr19	774462	775158	A549_Myers.65733	0	.	774462	775158	0	1	696	0
chr19	774463	774909	B_cells_Cheung.149551	0	.	774463	774909	0	1	446	0
chr19	865877	866436	B_cells_Cheung.149566	0	.	865877	866436	0	1	559	0
chr19	865928	866365	B_Cells_Pritchard.2503863	0	+	865928	866365	0	1	437	0
chr19	866540	866886	B_cells_Cheung.149567	0	.	866540	866886	0	1	346	0
chr19	866541	866912	K562.34298	0	.	866541	866912	0	1	371	0
chr19	874537	875193	prostate_carcinoma.76602	0	.	874537	875193	0	1	656	0
chr19	924393	931429	NEC_from_H9.57524	0	-	924393	931429	0	2	802,50	0,6986
chr19	924425	924922	IMR90_UCSD_REMC.38483	0	-	924425	924922	0	1	497	0
chr19	925026	925443	H1_rRNA-depleted_UCSD_REMC.66815	0	.	925026	925443	0	1	417	0
chr19	925198	925527	adipose_Burge.30229	0	.	925198	925527	0	1	329	0
chr19	925204	925525	lymph_node_Burge.38546	0	.	925204	925525	0	1	321	0
chr19	925405	926752	HIT000087511	0	+	925405	926752	0	1	1347	0
chr19	925596	926484	lymph_node_Burge.38547	0	.	925596	926484	0	1	888	0
chr19	925609	926689	BT474_Burge_Thompson.26356	0	.	925609	926689	0	1	1080	0
chr19	925615	926593	brain_AmbionMAQC.33964	0	.	925615	926593	0	1	978	0
chr19	925617	926937	melanoma_Garraway_short_term_cultures.52443	0	.	925617	926937	0	1	1320	0
chr19	925619	931804	NEC_from_H9.57526	0	+	925619	931804	0	2	1158,72	0,6113
chr19	925619	926931	NEC_from_H9.57525	0	.	925619	926931	0	1	1312	0
chr19	925641	926296	colon_Burge.29388	0	.	925641	926296	0	1	655	0
chr19	925648	926745	MDAMB468_Thompson.18517	0	.	925648	926745	0	1	1097	0
chr19	925654	926502	H1_rRNA-depleted_UCSD_REMC.66816	0	.	925654	926502	0	1	848	0
chr19	925657	926041	MB435_Burge.33117	0	.	925657	926041	0	1	384	0
chr19	925695	926645	adipose_Burge.30231	0	.	925695	926645	0	1	950	0
chr19	925719	926501	testes_Burge.41049	0	.	925719	926501	0	1	782	0
chr19	925731	926036	liver_polyA+.103544	0	.	925731	926036	0	1	305	0
chr19	925882	926647	breast_Burge.31265	0	.	925882	926647	0	2	208,486	0,279
chr19	925918	926841	MCF10A_Thompson.16549	0	.	925918	926841	0	1	923	0
chr19	926148	926699	MB435_Burge.33118	0	.	926148	926699	0	1	551	0
chr19	926156	932912	liver_polyA+.103545	0	+	926156	932912	0	4	393,115,10,79	0,506,2716,6677
chr19	926193	932912	kidney_Gilad.66453	0	+	926193	932912	0	4	356,115,10,79	0,469,2679,6640
chr19	927394	928187	B_Cells_Pritchard.2504045	0	-	927394	928187	0	1	793	0
chr19	927446	928343	H1_polyA+.89877	0	.	927446	928343	0	1	897	0
chr19	927864	928493	BT474_Burge_Thompson.26357	0	.	927864	928493	0	1	629	0
chr19	930266	930856	B_Cells_Pritchard.2504049	0	+	930266	930856	0	1	590	0
chr19	930273	930734	A549_Myers.65939	0	.	930273	930734	0	1	461	0
chr19	933600	934240	A549_Myers.65941	0	.	933600	934240	0	1	640	0
chr19	947012	947994	HeLa_polyA+_Chen.28019	0	.	947012	947994	0	1	982	0
chr19	947155	947470	CD4_Snyder.57432	0	.	947155	947470	0	1	315	0
chr19	948190	949430	HeLa_polyA+_Chen.28021	0	.	948190	949430	0	1	1240	0
chr19	1392985	1393428	H1_rRNA-depleted_UCSD_REMC.66930	0	.	1392985	1393428	0	1	443	0
chr19	1396415	1397630	B_cells_Cheung.149803	0	.	1396415	1397630	0	1	1215	0
chr19	1397739	1399708	B_cells_Cheung.149804	0	.	1397739	1399708	0	1	1969	0
chr19	1465830	1466466	prostate_carcinoma.77288	0	.	1465830	1466466	0	1	636	0
chr19	1469664	1470084	prostate_carcinoma.77290	0	.	1469664	1470084	0	1	420	0
chr19	1473620	1474707	prostate_carcinoma.77292	0	.	1473620	1474707	0	1	1087	0
chr19	1473886	1474838	brain_AmbionMAQC.34021	0	.	1473886	1474838	0	1	952	0
chr19	1489717	1490317	B_cells_Cheung.149712	0	.	1489717	1490317	0	1	600	0
chr19	1489868	1490475	prostate_carcinoma.77302	0	.	1489868	1490475	0	1	607	0
chr19	1524577	1526045	HIT000026395	0	-	1524577	1526045	0	1	1468	0
chr19	1524594	1526474	HIT000017375	0	-	1524594	1526474	0	1	1880	0
chr19	1525266	1526154	MDAMB468_Thompson.18591	0	.	1525266	1526154	0	1	888	0
chr19	1525269	1526179	CD4_Plagnol_resting.48550	0	.	1525269	1526179	0	1	910	0
chr19	1525271	1526218	K562.34444	0	.	1525271	1526218	0	1	947	0
chr19	1525276	1526206	MCF7_Burge_Thompson.24606	0	.	1525276	1526206	0	1	930	0
chr19	1525278	1526152	melanoma_Garraway_short_term_cultures.52556	0	.	1525278	1526152	0	1	874	0
chr19	1525297	1526179	prostate_normal.45219	0	.	1525297	1526179	0	1	882	0
chr19	1525300	1525635	ZR751_Thompson.18766	0	.	1525300	1525635	0	1	335	0
chr19	1525300	1526171	testes_Burge.41179	0	.	1525300	1526171	0	1	871	0
chr19	1525340	1526157	MeWo_Garraway.28196	0	.	1525340	1526157	0	1	817	0
chr19	1525377	1526171	MB435_Burge.33261	0	.	1525377	1526171	0	1	794	0
chr19	1526949	1527309	IMR90_UCSD_REMC.38605	0	+	1526949	1527309	0	1	360	0
chr19	1545153	1545757	HeLa_polyA+_Chen.28089	0	.	1545153	1545757	0	1	604	0
chr19	1545165	1546039	CD4_Plagnol_activated.50092	0	.	1545165	1546039	0	1	874	0
chr19	1545168	1545861	CD4_Plagnol_resting.48718	0	.	1545168	1545861	0	1	693	0
chr19	1545173	1545705	H9_polyA+.34448	0	.	1545173	1545705	0	1	532	0
chr19	1545178	1545662	melanoma_Garraway_short_term_cultures.52564	0	.	1545178	1545662	0	1	484	0
chr19	1604947	1605437	B_cells_Cheung.149731	0	.	1604947	1605437	0	1	490	0
chr19	1608713	1609283	A549_Myers.65846	0	.	1608713	1609283	0	1	570	0
chr19	1614272	1614896	B_cells_Cheung.149732	0	.	1614272	1614896	0	1	624	0
chr19	1616527	1617237	B_cells_Cheung.149734	0	.	1616527	1617237	0	1	710	0
chr19	1618299	1620027	B_cells_Cheung.149735	0	.	1618299	1620027	0	1	1728	0
chr19	1620655	1621103	B_cells_Cheung.149737	0	.	1620655	1621103	0	1	448	0
chr19	1623090	1623537	A549_Myers.65847	0	.	1623090	1623537	0	1	447	0
chr19	1666651	1700666	pHIT000092216	0	+	1666651	1700666	0	4	118,71,67,173	0,17205,18945,33842
chr19	1676311	1677312	A549_Myers.65849	0	.	1676311	1677312	0	1	1001	0
chr19	1679943	1680251	A549_Myers.65850	0	.	1679943	1680251	0	1	308	0
chr19	1698889	1700211	MIP101.53558	0	.	1698889	1700211	0	1	1322	0
chr19	1699013	1699731	K562.34402	0	.	1699013	1699731	0	1	718	0
chr19	1699078	1699710	HeLa_polyA+_Chen.28103	0	+	1699078	1699710	0	2	262,199	0,433
chr19	1700431	1700851	A549_Myers.65852	0	.	1700431	1700851	0	1	420	0
chr19	1801758	1802299	B_cells_Cheung.149749	0	.	1801758	1802299	0	1	541	0
chr19	1815779	1816305	H9_polyA-_Chen.11098	0	.	1815779	1816305	0	1	526	0
chr19	1817781	1820255	H1_polyA+.89765	0	.	1817781	1820255	0	1	2474	0
chr19	1819575	1820288	B_cells_Cheung.149752	0	.	1819575	1820288	0	1	713	0
chr19	1821091	1821747	B_cells_Cheung.149754	0	.	1821091	1821747	0	1	656	0
chr19	1821255	1821671	CD4_Plagnol_activated.50032	0	.	1821255	1821671	0	1	416	0
chr19	1821264	1821751	H1_polyA+.89767	0	.	1821264	1821751	0	1	487	0
chr19	1821978	1822415	CD4_Plagnol_activated.50033	0	.	1821978	1822415	0	1	437	0
chr19	1822017	1823166	B_Cells_Pritchard.2503955	0	+	1822017	1823166	0	1	1149	0
chr19	1824582	1825602	REMC_LuminalBreast.77137	0	.	1824582	1825602	0	1	1020	0
chr19	1838174	1838493	B_cells_Cheung.149764	0	.	1838174	1838493	0	1	319	0
chr19	1838965	1839362	B_cells_Cheung.149765	0	.	1838965	1839362	0	1	397	0
chr19	1841023	1841802	B_cells_Cheung.149767	0	.	1841023	1841802	0	1	779	0
chr19	1842570	1843000	B_cells_Cheung.149768	0	.	1842570	1843000	0	1	430	0
chr19	1843986	1844584	B_cells_Cheung.149770	0	.	1843986	1844584	0	1	598	0
chr19	1848574	1849153	B_cells_Cheung.149776	0	.	1848574	1849153	0	1	579	0
chr19	1848590	1849020	A549_Myers.65888	0	.	1848590	1849020	0	1	430	0
chr19	1880001	1880340	B_cells_Cheung.149787	0	.	1880001	1880340	0	1	339	0
chr19	1882066	1882446	B_cells_Cheung.149789	0	.	1882066	1882446	0	1	380	0
chr19	1883438	1884015	H1_polyA+.89777	0	.	1883438	1884015	0	1	577	0
chr19	1884156	1887020	REMC_LuminalBreast.77168	0	.	1884156	1887020	0	1	2864	0
chr19	1884238	1885586	B_cells_Cheung.149792	0	.	1884238	1885586	0	1	1348	0
chr19	1884242	1885328	REMC_MyoepithelialBreast.71684	0	.	1884242	1885328	0	1	1086	0
chr19	1884267	1885550	HepG2_Caltech_ENCODE.28637	0	.	1884267	1885550	0	1	1283	0
chr19	1884271	1885527	CD4_Plagnol_activated.50057	0	.	1884271	1885527	0	1	1256	0
chr19	1884555	1885361	prostate_normal.45312	0	.	1884555	1885361	0	1	806	0
chr19	1884853	1885419	H9_polyA+.34476	0	.	1884853	1885419	0	1	566	0
chr19	1885673	1886438	CD4_Plagnol_activated.50058	0	.	1885673	1886438	0	1	765	0
chr19	1885705	1888989	B_cells_Cheung.149793	0	.	1885705	1888989	0	1	3284	0
chr19	1885724	1889507	H1_polyA+.89778	0	.	1885724	1889507	0	1	3783	0
chr19	1886835	1888420	REMC_MyoepithelialBreast.71685	0	.	1886835	1888420	0	1	1585	0
chr19	1886950	1887917	CD4_Plagnol_activated.50060	0	.	1886950	1887917	0	1	967	0
chr19	1886977	1888319	melanoma_Garraway_short_term_cultures.52606	0	.	1886977	1888319	0	1	1342	0
chr19	1887303	1888266	REMC_LuminalBreast.77169	0	.	1887303	1888266	0	1	963	0
chr19	1887406	1888905	K562.34427	0	.	1887406	1888905	0	1	1499	0
chr19	1888247	1888911	CD4_Plagnol_activated.50061	0	.	1888247	1888911	0	1	664	0
chr19	1888405	1889535	REMC_LuminalBreast.77170	0	.	1888405	1889535	0	1	1130	0
chr19	1934413	1934805	CD4_Plagnol_resting.48951	0	.	1934413	1934805	0	1	392	0
chr19	1934422	1934792	CD4_Plagnol_activated.50179	0	.	1934422	1934792	0	1	370	0
chr19	1985605	1986329	A549_Myers.65916	0	.	1985605	1986329	0	1	724	0
chr19	2005581	2006176	B_Cells_Pritchard.2507725	0	+	2005581	2006176	0	1	595	0
chr19	2005618	2006202	B_cells_Cheung.149841	0	.	2005618	2006202	0	1	584	0
chr19	2006434	2007721	B_cells_Cheung.149842	0	.	2006434	2007721	0	1	1287	0
chr19	2006448	2007716	B_Cells_Pritchard.2507729	0	+	2006448	2007716	0	1	1268	0
chr19	2006835	2007630	A549_Myers.65920	0	.	2006835	2007630	0	1	795	0
chr19	2007829	2008357	B_cells_Cheung.149843	0	.	2007829	2008357	0	1	528	0
chr19	2007838	2015213	B_Cells_Pritchard.2507731	0	-	2007838	2015213	0	2	441,398	0,6977
chr19	2007838	2014001	B_Cells_Pritchard.2507733	0	+	2007838	2014001	0	1	6163	0
chr19	2008436	2009041	B_cells_Cheung.149844	0	.	2008436	2009041	0	1	605	0
chr19	2009102	2012469	B_cells_Cheung.149845	0	.	2009102	2012469	0	1	3367	0
chr19	2009738	2010778	REMC_LuminalBreast.77534	0	.	2009738	2010778	0	1	1040	0
chr19	2010325	2011813	H1_polyA+.89800	0	.	2010325	2011813	0	1	1488	0
chr19	2010382	2011431	HepG2_Caltech_ENCODE.28775	0	.	2010382	2011431	0	1	1049	0
chr19	2010384	2011262	MIP101.53629	0	.	2010384	2011262	0	1	878	0
chr19	2010387	2011199	prostate_normal.45258	0	.	2010387	2011199	0	1	812	0
chr19	2010864	2011292	K562.34438	0	.	2010864	2011292	0	1	428	0
chr19	2011394	2012293	prostate_carcinoma.78413	0	.	2011394	2012293	0	1	899	0
chr19	2011544	2012448	MIP101.53630	0	.	2011544	2012448	0	1	904	0
chr19	2011570	2012427	HepG2_Caltech_ENCODE.28776	0	.	2011570	2012427	0	1	857	0
chr19	2012361	2014212	REMC_LuminalBreast.77536	0	.	2012361	2014212	0	1	1851	0
chr19	2012764	2014118	B_cells_Cheung.149846	0	.	2012764	2014118	0	1	1354	0
chr19	2015359	2016614	B_cells_Cheung.149848	0	.	2015359	2016614	0	1	1255	0
chr19	2015450	2016501	A549_Myers.65927	0	.	2015450	2016501	0	1	1051	0
chr19	2015458	2016537	HeLa_polyA+_Chen.28133	0	.	2015458	2016537	0	1	1079	0
chr19	2015963	2016645	CD4_Plagnol_activated.50206	0	.	2015963	2016645	0	1	682	0
chr19	2016005	2017451	REMC_LuminalBreast.77538	0	.	2016005	2017451	0	1	1446	0
chr19	2673661	2674703	A549_Myers.66094	0	.	2673661	2674703	0	1	1042	0
chr19	2678604	2681025	REMC_LuminalBreast.77293	0	.	2678604	2681025	0	1	2421	0
chr19	2678678	2679273	MIP101.53669	0	.	2678678	2679273	0	1	595	0
chr19	2678703	2681455	HIT000266274	0	-	2678703	2681455	0	2	577,509	0,2243
chr19	2678741	2679280	BT474_Burge_Thompson.26529	0	.	2678741	2679280	0	1	539	0
chr19	2678743	2679265	ZR751_Thompson.18853	0	.	2678743	2679265	0	1	522	0
chr19	2678743	2679247	prostate_normal.45336	0	.	2678743	2679247	0	1	504	0
chr19	2678746	2679269	H9_polyA+.34557	0	.	2678746	2679269	0	1	523	0
chr19	2678751	2679245	CD4_Plagnol_resting.48755	0	.	2678751	2679245	0	1	494	0
chr19	2678754	2679260	testes_Burge.41425	0	.	2678754	2679260	0	1	506	0
chr19	2678755	2679286	HeLa_polyA+_Chen.28166	0	.	2678755	2679286	0	1	531	0
chr19	2678757	2679270	brain_AmbionMAQC.34147	0	.	2678757	2679270	0	1	513	0
chr19	2678784	2679262	lymph_node_Burge.38992	0	.	2678784	2679262	0	1	478	0
chr19	2679331	2680396	brain_AmbionMAQC.34148	0	.	2679331	2680396	0	1	1065	0
chr19	2679441	2681045	ZR751_Thompson.18854	0	.	2679441	2681045	0	1	1604	0
chr19	2679922	2683085	MIP101.53671	0	+	2679922	2683085	0	2	480,508	0,2655
chr19	2680917	2681967	MDAMB231_Thompson.17246	0	.	2680917	2681967	0	1	1050	0
chr19	2680931	2681828	prostate_carcinoma.76469	0	.	2680931	2681828	0	1	897	0
chr19	2680955	2682010	HeLa_polyA+_Chen.28168	0	.	2680955	2682010	0	1	1055	0
chr19	2680986	2681744	prostate_normal.45338	0	.	2680986	2681744	0	1	758	0
chr19	2681052	2681502	MCF7_Burge_Thompson.24646	0	.	2681052	2681502	0	1	450	0
chr19	2681096	2681586	ZR751_Thompson.18852	0	.	2681096	2681586	0	1	490	0
chr19	2681130	2681681	lymph_node_Burge.38996	0	.	2681130	2681681	0	1	551	0
chr19	2681216	2681521	MB435_Burge.33444	0	.	2681216	2681521	0	1	305	0
chr19	2681391	2681986	REMC_LuminalBreast.77294	0	.	2681391	2681986	0	1	595	0
chr19	2681394	2681984	H9_polyA+.34560	0	.	2681394	2681984	0	1	590	0
chr19	2682126	2682477	testes_Burge.41429	0	.	2682126	2682477	0	1	351	0
chr19	2765978	2766784	CD4_Plagnol_resting.48774	0	.	2765978	2766784	0	1	806	0
chr19	2766029	2766788	CD4_Plagnol_activated.50299	0	.	2766029	2766788	0	1	759	0
chr19	2766090	2766738	BT20_Thompson.16813	0	.	2766090	2766738	0	1	648	0
chr19	2766103	2766777	A549_Myers.66117	0	.	2766103	2766777	0	1	674	0
chr19	2839722	2840132	B_Cells_Pritchard.2505537	0	.	2839722	2840132	0	1	410	0
chr19	2897836	2898709	REMC_MyoepithelialBreast.71839	0	.	2897836	2898709	0	1	873	0
chr19	2899859	2902359	B_cells_Cheung.150175	0	.	2899859	2902359	0	1	2500	0
chr19	2899874	2902075	B_Cells_Pritchard.2505715	0	-	2899874	2902075	0	1	2201	0
chr19	2901051	2901824	A549_Myers.66125	0	.	2901051	2901824	0	1	773	0
chr19	2901066	2901604	MCF7_Burge_Thompson.24662	0	.	2901066	2901604	0	1	538	0
chr19	2901067	2901490	ZR751_Thompson.18868	0	.	2901067	2901490	0	1	423	0
chr19	2916281	2916613	B_cells_Cheung.150189	0	.	2916281	2916613	0	1	332	0
chr19	2920110	2920590	B_cells_Cheung.150191	0	.	2920110	2920590	0	1	480	0
chr19	2925186	2925915	B_cells_Cheung.150196	0	.	2925186	2925915	0	1	729	0
chr19	2925279	2925899	B_Cells_Pritchard.2505739	0	+	2925279	2925899	0	1	620	0
chr19	3035877	3036368	B_Cells_Pritchard.2506059	0	+	3035877	3036368	0	1	491	0
chr19	3075605	3076013	MCF10A_Thompson.16692	0	.	3075605	3076013	0	1	408	0
chr19	3080711	3081383	REMC_BreastStem.39150	0	.	3080711	3081383	0	1	672	0
chr19	3082144	3082468	B_cells_Cheung.150234	0	.	3082144	3082468	0	1	324	0
chr19	3082145	3082449	CD4_Plagnol_resting.48844	0	.	3082145	3082449	0	1	304	0
chr19	3082153	3082525	K562.34543	0	.	3082153	3082525	0	1	372	0
chr19	3085408	3085789	B_cells_Cheung.150238	0	.	3085408	3085789	0	1	381	0
chr19	3118100	3119634	REMC_LuminalBreast.77363	0	.	3118100	3119634	0	1	1534	0
chr19	3118441	3119632	B_cells_Cheung.150250	0	.	3118441	3119632	0	1	1191	0
chr19	3118444	3119523	CD4_Plagnol_resting.48860	0	.	3118444	3119523	0	1	1079	0
chr19	3118448	3119469	CD4_Plagnol_activated.50361	0	.	3118448	3119469	0	1	1021	0
chr19	3121029	3124443	B_cells_Cheung.150252	0	.	3121029	3124443	0	1	3414	0
chr19	3122439	3123962	REMC_LuminalBreast.77366	0	+	3122439	3123962	0	2	134,772	0,751
chr19	3122684	3123962	REMC_LuminalBreast.77367	0	.	3122684	3123962	0	1	1278	0
chr19	3126771	3128691	REMC_LuminalBreast.77368	0	.	3126771	3128691	0	1	1920	0
chr19	3127345	3128676	CD4_Plagnol_activated.50375	0	.	3127345	3128676	0	1	1331	0
chr19	3127874	3128212	HeLa_polyA+_Chen.28204	0	.	3127874	3128212	0	1	338	0
chr19	3128075	3128644	A549_Myers.66154	0	.	3128075	3128644	0	1	569	0
chr19	3132890	3133259	melanoma_Garraway_short_term_cultures.52745	0	.	3132890	3133259	0	1	369	0
chr19	3162458	3162871	HeLa_polyA+_Chen.28207	0	.	3162458	3162871	0	1	413	0
chr19	3163102	3164590	HeLa_polyA+_Chen.28208	0	.	3163102	3164590	0	1	1488	0
chr19	3163149	3165291	B_cells_Cheung.150254	0	.	3163149	3165291	0	1	2142	0
chr19	3163239	3164600	B_Cells_Pritchard.2506211	0	.	3163239	3164600	0	1	1361	0
chr19	3167582	3168525	HeLa_polyA+_Chen.28210	0	.	3167582	3168525	0	1	943	0
chr19	3167602	3168560	B_Cells_Pritchard.2506223	0	.	3167602	3168560	0	1	958	0
chr19	3167699	3169029	H1_polyA+.90035	0	.	3167699	3169029	0	1	1330	0
chr19	3167727	3168584	B_cells_Cheung.150258	0	.	3167727	3168584	0	1	857	0
chr19	3167773	3168326	melanoma_Garraway_short_term_cultures.52748	0	.	3167773	3168326	0	1	553	0
chr19	3167781	3168430	prostate_carcinoma.76567	0	.	3167781	3168430	0	1	649	0
chr19	3167788	3168444	MIP101.53767	0	.	3167788	3168444	0	1	656	0
chr19	3169075	3169904	B_cells_Cheung.150260	0	.	3169075	3169904	0	1	829	0
chr19	3169220	3169876	H1_polyA+.90038	0	.	3169220	3169876	0	1	656	0
chr19	3169276	3169910	B_Cells_Pritchard.2506227	0	.	3169276	3169910	0	1	634	0
chr19	3173757	3174232	B_Cells_Pritchard.2506247	0	.	3173757	3174232	0	1	475	0
chr19	3265758	3297200	pHIT000118803	0	+	3265758	3297200	0	3	96,162,60	0,29506,31382
chr19	3275839	3276166	A549_Myers.66167	0	.	3275839	3276166	0	1	327	0
chr19	3286327	3286900	B_Cells_Pritchard.2506577	0	.	3286327	3286900	0	1	573	0
chr19	3287534	3287913	A549_Myers.66168	0	.	3287534	3287913	0	1	379	0
chr19	3288180	3288798	A549_Myers.66169	0	.	3288180	3288798	0	1	618	0
chr19	3289491	3290040	liver_polyA+.103984	0	.	3289491	3290040	0	1	549	0
chr19	3294974	3295394	A549_Myers.66171	0	.	3294974	3295394	0	1	420	0
chr19	3304391	3304916	prostate_carcinoma.76697	0	.	3304391	3304916	0	1	525	0
chr19	3304465	3304898	B_cells_Cheung.150267	0	.	3304465	3304898	0	1	433	0
chr19	3420338	3421377	REMC_BreastStem.39155	0	.	3420338	3421377	0	1	1039	0
chr19	3420692	3423819	REMC_LuminalBreast.77423	0	.	3420692	3423819	0	1	3127	0
chr19	3420929	3421857	REMC_MyoepithelialBreast.71857	0	.	3420929	3421857	0	1	928	0
chr19	3422730	3423412	REMC_BreastStem.39156	0	.	3422730	3423412	0	1	682	0
chr19	3422834	3423446	CD4_Plagnol_resting.48885	0	.	3422834	3423446	0	1	612	0
chr19	3422890	3423587	CD4_Plagnol_activated.50379	0	.	3422890	3423587	0	1	697	0
chr19	3422890	3423612	MCF7_Burge_Thompson.24685	0	.	3422890	3423612	0	1	722	0
chr19	3422901	3424137	B_cells_Cheung.150316	0	.	3422901	3424137	0	1	1236	0
chr19	3423104	3424281	REMC_MyoepithelialBreast.71858	0	.	3423104	3424281	0	1	1177	0
chr19	3435821	3437009	REMC_LuminalBreast.77427	0	.	3435821	3437009	0	1	1188	0
chr19	3437732	3438680	REMC_LuminalBreast.77428	0	.	3437732	3438680	0	1	948	0
chr19	3437839	3438636	H1_polyA+.89984	0	.	3437839	3438636	0	1	797	0
chr19	3438871	3439668	B_cells_Cheung.150322	0	.	3438871	3439668	0	1	797	0
chr19	3438908	3439699	REMC_LuminalBreast.77429	0	.	3438908	3439699	0	1	791	0
chr19	3438929	3439684	REMC_MyoepithelialBreast.71862	0	.	3438929	3439684	0	1	755	0
chr19	3439117	3439691	H1_polyA+.89985	0	.	3439117	3439691	0	1	574	0
chr19	3439231	3439679	CD4_Plagnol_activated.50381	0	.	3439231	3439679	0	1	448	0
chr19	3725363	3725924	brain_AmbionMAQC.34297	0	.	3725363	3725924	0	1	561	0
chr19	3880692	3882238	REMC_MyoepithelialBreast.73121	0	.	3880692	3882238	0	1	1546	0
chr19	3880762	3881644	REMC_BreastStem.39186	0	.	3880762	3881644	0	1	882	0
chr19	3880786	3881630	REMC_LuminalBreast.78511	0	.	3880786	3881630	0	1	844	0
chr19	3893755	3899209	REMC_MyoepithelialBreast.73126	0	-	3893755	3899209	0	2	4114,333	0,5121
chr19	3896949	3897736	prostate_carcinoma.77885	0	.	3896949	3897736	0	1	787	0
chr19	3897024	3897529	B_Cells_Pritchard.2513701	0	.	3897024	3897529	0	1	505	0
chr19	3897077	3897378	skeletal_muscle_Burge.26222	0	.	3897077	3897378	0	1	301	0
chr19	3898077	3898506	B_cells_Cheung.150396	0	.	3898077	3898506	0	1	429	0
chr19	3898140	3898498	B_Cells_Pritchard.2513705	0	.	3898140	3898498	0	1	358	0
chr19	3898191	3898525	skeletal_muscle_Burge.26223	0	.	3898191	3898525	0	1	334	0
chr19	3899420	3904894	REMC_BreastStem.39195	0	.	3899420	3904894	0	1	5474	0
chr19	3899462	3899930	H1_polyA+.90159	0	.	3899462	3899930	0	1	468	0
chr19	3900712	3901289	H1_polyA+.90160	0	.	3900712	3901289	0	1	577	0
chr19	3901492	3902007	B_Cells_Pritchard.2513719	0	.	3901492	3902007	0	1	515	0
chr19	3901529	3903182	B_cells_Cheung.150397	0	.	3901529	3903182	0	1	1653	0
chr19	3902125	3903353	B_Cells_Pritchard.2513721	0	.	3902125	3903353	0	1	1228	0
chr19	3902194	3903026	melanoma_Garraway_short_term_cultures.52833	0	.	3902194	3903026	0	1	832	0
chr19	3902584	3903079	MIP101.54362	0	.	3902584	3903079	0	1	495	0
chr19	3902721	3903181	CD4_Plagnol_resting.48976	0	.	3902721	3903181	0	1	460	0
chr19	4190623	4191749	HepG2_Caltech_ENCODE.28842	0	.	4190623	4191749	0	1	1126	0
chr19	4194322	4194821	HepG2_Caltech_ENCODE.28844	0	.	4194322	4194821	0	1	499	0
chr19	4221150	4221707	CD4_Plagnol_activated.50504	0	.	4221150	4221707	0	1	557	0
chr19	4223104	4224683	REMC_LuminalBreast.77521	0	.	4223104	4224683	0	1	1579	0
chr19	4223114	4224929	REMC_BreastStem.39292	0	.	4223114	4224929	0	1	1815	0
chr19	4223579	4225041	REMC_MyoepithelialBreast.71944	0	.	4223579	4225041	0	1	1462	0
chr19	4227413	4228379	REMC_MyoepithelialBreast.71945	0	.	4227413	4228379	0	1	966	0
chr19	4411570	4411965	B_cells_Cheung.150499	0	.	4411570	4411965	0	1	395	0
chr19	4419216	4419661	B_cells_Cheung.150502	0	.	4419216	4419661	0	1	445	0
chr19	4419228	4419610	B_Cells_Pritchard.2509511	0	+	4419228	4419610	0	1	382	0
chr19	4420507	4421578	prostate_carcinoma.76936	0	-	4420507	4421578	0	2	265,225	0,846
chr19	4469908	4470254	A549_Myers.66379	0	.	4469908	4470254	0	1	346	0
chr19	4469957	4471519	B_cells_Cheung.150522	0	.	4469957	4471519	0	1	1562	0
chr19	4470140	4471305	B_Cells_Pritchard.2508861	0	.	4470140	4471305	0	1	1165	0
chr19	4517099	4519526	HepG2_Caltech_ENCODE.28915	0	.	4517099	4519526	0	1	2427	0
chr19	4518140	4519374	brain_AmbionMAQC.34406	0	.	4518140	4519374	0	1	1234	0
chr19	4518170	4519464	melanoma_Garraway_short_term_cultures.52941	0	.	4518170	4519464	0	1	1294	0
chr19	4518264	4519305	A549_Myers.66385	0	.	4518264	4519305	0	1	1041	0
chr19	4520648	4522998	HIT000045462	0	+	4520648	4522998	0	1	2350	0
chr19	4521186	4522391	HepG2_Caltech_ENCODE.28917	0	.	4521186	4522391	0	1	1205	0
chr19	4521230	4521767	brain_AmbionMAQC.34407	0	.	4521230	4521767	0	1	537	0
chr19	4521245	4522225	melanoma_Garraway_short_term_cultures.52944	0	.	4521245	4522225	0	1	980	0
chr19	4524593	4524959	brain_AmbionMAQC.34409	0	.	4524593	4524959	0	1	366	0
chr19	4525938	4528823	HepG2_Caltech_ENCODE.28918	0	.	4525938	4528823	0	1	2885	0
chr19	4526083	4527373	melanoma_Garraway_short_term_cultures.52945	0	.	4526083	4527373	0	1	1290	0
chr19	4526664	4527843	brain_AmbionMAQC.34410	0	.	4526664	4527843	0	1	1179	0
chr19	4526879	4527337	MB435_Burge.33754	0	.	4526879	4527337	0	1	458	0
chr19	4528156	4528845	MB435_Burge.33756	0	.	4528156	4528845	0	1	689	0
chr19	4529038	4529997	HepG2_Caltech_ENCODE.28919	0	.	4529038	4529997	0	1	959	0
chr19	4529223	4530319	melanoma_Garraway_short_term_cultures.52946	0	.	4529223	4530319	0	1	1096	0
chr19	4529585	4530265	MB435_Burge.33757	0	.	4529585	4530265	0	1	680	0
chr19	4530488	4532260	HepG2_Caltech_ENCODE.28920	0	.	4530488	4532260	0	1	1772	0
chr19	4530744	4536152	pHIT000031664	0	+	4530744	4536152	0	3	126,80,145	0,463,5263
chr19	4531460	4531790	A549_Myers.66391	0	.	4531460	4531790	0	1	330	0
chr19	4532317	4532927	A549_Myers.66392	0	.	4532317	4532927	0	1	610	0
chr19	4532453	4532797	MDAMB231_Thompson.17316	0	.	4532453	4532797	0	1	344	0
chr19	4532457	4532826	ZR751_Thompson.18970	0	.	4532457	4532826	0	1	369	0
chr19	4532468	4532805	MB435_Burge.33716	0	.	4532468	4532805	0	1	337	0
chr19	4532481	4532799	colon_Burge.29924	0	.	4532481	4532799	0	1	318	0
chr19	4534144	4534544	A549_Myers.66393	0	.	4534144	4534544	0	1	400	0
chr19	4535021	4535340	A549_Myers.66394	0	.	4535021	4535340	0	1	319	0
chr19	4535992	4536334	A549_Myers.66395	0	.	4535992	4536334	0	1	342	0
chr19	4552990	4554227	REMC_MyoepithelialBreast.71988	0	.	4552990	4554227	0	1	1237	0
chr19	4556995	4569215	B_Cells_Pritchard.2509107	0	+	4556995	4569215	0	2	18,889	0,11331
chr19	4557953	4558762	REMC_BreastStem.39313	0	.	4557953	4558762	0	1	809	0
chr19	4567771	4569668	REMC_BreastStem.39541	0	.	4567771	4569668	0	1	1897	0
chr19	4567809	4569611	REMC_LuminalBreast.77598	0	.	4567809	4569611	0	1	1802	0
chr19	4568184	4569389	REMC_MyoepithelialBreast.71993	0	.	4568184	4569389	0	1	1205	0
chr19	4569849	4570233	REMC_BreastStem.39542	0	.	4569849	4570233	0	1	384	0
chr19	4570440	4574346	REMC_MyoepithelialBreast.71994	0	.	4570440	4574346	0	1	3906	0
chr19	4570444	4577213	REMC_BreastStem.39543	0	.	4570444	4577213	0	1	6769	0
chr19	4570460	4572728	REMC_LuminalBreast.77599	0	.	4570460	4572728	0	1	2268	0
chr19	4571798	4572412	B_Cells_Pritchard.2509571	0	-	4571798	4572412	0	1	614	0
chr19	4572864	4578474	REMC_LuminalBreast.77600	0	.	4572864	4578474	0	1	5610	0
chr19	4574109	4574460	B_cells_Cheung.150544	0	.	4574109	4574460	0	1	351	0
chr19	4577660	4578428	B_cells_Cheung.150548	0	.	4577660	4578428	0	1	768	0
chr19	4577722	4578044	prostate_carcinoma.76816	0	.	4577722	4578044	0	1	322	0
chr19	4578883	4581492	REMC_MyoepithelialBreast.71996	0	.	4578883	4581492	0	1	2609	0
chr19	4582805	4586485	REMC_LuminalBreast.77604	0	.	4582805	4586485	0	1	3680	0
chr19	4582898	4586483	REMC_MyoepithelialBreast.71998	0	.	4582898	4586483	0	1	3585	0
chr19	4583363	4583943	B_cells_Cheung.150557	0	.	4583363	4583943	0	1	580	0
chr19	4584015	4585338	B_cells_Cheung.150558	0	.	4584015	4585338	0	1	1323	0
chr19	4584093	4585355	prostate_carcinoma.76820	0	.	4584093	4585355	0	1	1262	0
chr19	4584117	4584490	prostate_normal.45507	0	.	4584117	4584490	0	1	373	0
chr19	4584191	4585505	H1_polyA+.90296	0	.	4584191	4585505	0	1	1314	0
chr19	4584216	4585005	melanoma_Garraway_short_term_cultures.52947	0	.	4584216	4585005	0	1	789	0
chr19	4586271	4586625	B_cells_Cheung.150560	0	.	4586271	4586625	0	1	354	0
chr19	4586686	4587285	B_cells_Cheung.150561	0	.	4586686	4587285	0	1	599	0
chr19	4586924	4587315	prostate_carcinoma.76823	0	.	4586924	4587315	0	1	391	0
chr19	4680836	4682453	B_cells_Cheung.150616	0	.	4680836	4682453	0	1	1617	0
chr19	4681722	4682300	prostate_carcinoma.76841	0	.	4681722	4682300	0	1	578	0
chr19	4684607	4684999	B_Cells_Pritchard.2509289	0	.	4684607	4684999	0	1	392	0
chr19	4688621	4689081	B_cells_Cheung.150618	0	.	4688621	4689081	0	1	460	0
chr19	4693438	4694539	BT474_Burge_Thompson.26689	0	.	4693438	4694539	0	1	1101	0
chr19	4723883	4724589	B_Cells_Pritchard.2509399	0	.	4723883	4724589	0	1	706	0
chr19	4723917	4724427	BT474_Burge_Thompson.26691	0	.	4723917	4724427	0	1	510	0
chr19	4724070	4724462	brain_AmbionMAQC.34424	0	.	4724070	4724462	0	1	392	0
chr19	4736138	4736536	brain_AmbionMAQC.34428	0	.	4736138	4736536	0	1	398	0
chr19	5105955	5108175	HIT000010472	0	+	5105955	5108175	0	1	2220	0
chr19	5106146	5107005	REMC_MyoepithelialBreast.72095	0	.	5106146	5107005	0	1	859	0
chr19	5106172	5106879	CD4_Plagnol_resting.49237	0	.	5106172	5106879	0	1	707	0
chr19	5106212	5107832	H1_polyA+.90383	0	.	5106212	5107832	0	1	1620	0
chr19	5106417	5107886	melanoma_Garraway_short_term_cultures.53011	0	.	5106417	5107886	0	1	1469	0
chr19	5106536	5109199	REMC_BreastStem.39378	0	.	5106536	5109199	0	1	2663	0
chr19	5106666	5107917	BT474_Burge_Thompson.26718	0	.	5106666	5107917	0	1	1251	0
chr19	5107030	5107913	CD4_Plagnol_resting.49238	0	.	5107030	5107913	0	1	883	0
chr19	5107172	5107910	CD4_Plagnol_activated.50665	0	.	5107172	5107910	0	1	738	0
chr19	5107521	5109180	REMC_MyoepithelialBreast.72096	0	.	5107521	5109180	0	1	1659	0
chr19	5108070	5109183	B_cells_Cheung.150707	0	.	5108070	5109183	0	1	1113	0
chr19	5108074	5109093	melanoma_Garraway_short_term_cultures.53012	0	.	5108074	5109093	0	1	1019	0
chr19	5108075	5109191	H1_polyA+.90384	0	.	5108075	5109191	0	1	1116	0
chr19	5108088	5109119	CD4_Plagnol_resting.49239	0	.	5108088	5109119	0	1	1031	0
chr19	5108102	5109130	CD4_Plagnol_activated.50666	0	.	5108102	5109130	0	1	1028	0
chr19	5108112	5109135	BT474_Burge_Thompson.26719	0	.	5108112	5109135	0	1	1023	0
chr19	5108187	5109233	K562.34747	0	-	5108187	5109233	0	2	507,148	0,898
chr19	5108187	5109233	K562.34746	0	.	5108187	5109233	0	1	1046	0
chr19	5110816	5112859	REMC_LuminalBreast.77693	0	.	5110816	5112859	0	1	2043	0
chr19	5110911	5112404	REMC_BreastStem.39379	0	.	5110911	5112404	0	1	1493	0
chr19	5112723	5113477	REMC_MyoepithelialBreast.72100	0	.	5112723	5113477	0	1	754	0
chr19	5113200	5113509	REMC_LuminalBreast.77694	0	.	5113200	5113509	0	1	309	0
chr19	5114457	5116602	REMC_LuminalBreast.77695	0	.	5114457	5116602	0	1	2145	0
chr19	5115049	5118211	REMC_MyoepithelialBreast.72102	0	.	5115049	5118211	0	1	3162	0
chr19	5115787	5118318	REMC_BreastStem.39381	0	.	5115787	5118318	0	1	2531	0
chr19	5116674	5118230	REMC_LuminalBreast.77696	0	.	5116674	5118230	0	1	1556	0
chr19	5117116	5118133	H1_polyA+.90386	0	.	5117116	5118133	0	1	1017	0
chr19	5117179	5118319	B_cells_Cheung.150711	0	.	5117179	5118319	0	1	1140	0
chr19	5119416	5124878	REMC_LuminalBreast.77698	0	.	5119416	5124878	0	1	5462	0
chr19	5121493	5122315	REMC_BreastStem.39384	0	.	5121493	5122315	0	1	822	0
chr19	5125064	5125375	B_cells_Cheung.150719	0	.	5125064	5125375	0	1	311	0
chr19	5127030	5130017	REMC_BreastStem.39388	0	.	5127030	5130017	0	1	2987	0
chr19	5127694	5130836	REMC_LuminalBreast.77700	0	.	5127694	5130836	0	1	3142	0
chr19	5128119	5129395	REMC_MyoepithelialBreast.72108	0	.	5128119	5129395	0	1	1276	0
chr19	5128173	5128844	B_cells_Cheung.150724	0	.	5128173	5128844	0	1	671	0
chr19	5129037	5130612	H1_polyA+.90391	0	.	5129037	5130612	0	1	1575	0
chr19	5129928	5130604	B_cells_Cheung.150726	0	.	5129928	5130604	0	1	676	0
chr19	5133362	5135253	REMC_LuminalBreast.77702	0	.	5133362	5135253	0	1	1891	0
chr19	5133365	5134258	melanoma_Garraway_short_term_cultures.53022	0	.	5133365	5134258	0	1	893	0
chr19	5133377	5134017	CD4_Plagnol_activated.50674	0	.	5133377	5134017	0	1	640	0
chr19	5133475	5134137	prostate_carcinoma.77000	0	.	5133475	5134137	0	1	662	0
chr19	5133653	5143192	B_Cells_Pritchard.2510031	0	+	5133653	5143192	0	3	636,446,432	0,763,9107
chr19	5134352	5135159	REMC_MyoepithelialBreast.72112	0	.	5134352	5135159	0	1	807	0
chr19	5135376	5135891	REMC_BreastStem.39390	0	.	5135376	5135891	0	1	515	0
chr19	5135387	5135919	B_cells_Cheung.150732	0	.	5135387	5135919	0	1	532	0
chr19	5135397	5135907	H1_polyA+.90394	0	.	5135397	5135907	0	1	510	0
chr19	5135399	5135945	HepG2_Caltech_ENCODE.28922	0	.	5135399	5135945	0	1	546	0
chr19	5135403	5138228	REMC_LuminalBreast.77703	0	.	5135403	5138228	0	1	2825	0
chr19	5135406	5136170	B_Cells_Pritchard.2510033	0	-	5135406	5136170	0	1	764	0
chr19	5135406	5135893	REMC_MyoepithelialBreast.72113	0	.	5135406	5135893	0	1	487	0
chr19	5136087	5138839	REMC_BreastStem.39391	0	.	5136087	5138839	0	1	2752	0
chr19	5137204	5137859	melanoma_Garraway_short_term_cultures.53024	0	.	5137204	5137859	0	1	655	0
chr19	5138969	5140415	REMC_BreastStem.39392	0	.	5138969	5140415	0	1	1446	0
chr19	5149682	5151007	REMC_LuminalBreast.77709	0	.	5149682	5151007	0	1	1325	0
chr19	5305633	5306102	B_Cells_Pritchard.2510457	0	.	5305633	5306102	0	1	469	0
chr19	5374507	5375188	BT474_Burge_Thompson.26742	0	.	5374507	5375188	0	1	681	0
chr19	5374570	5375025	B_Cells_Pritchard.2510681	0	.	5374570	5375025	0	1	455	0
chr19	5386060	5386781	B_Cells_Pritchard.2510729	0	.	5386060	5386781	0	1	721	0
chr19	5394969	5395776	B_Cells_Pritchard.2510767	0	.	5394969	5395776	0	1	807	0
chr19	5486340	5518935	pHIT000031702	0	-	5486340	5518935	0	3	24,43,260	0,22683,32335
chr19	5493656	5494035	B_cells_Cheung.150780	0	.	5493656	5494035	0	1	379	0
chr19	5497369	5518935	pHIT000031699	0	-	5497369	5518935	0	4	86,43,208,260	0,11654,19555,21306
chr19	5497369	5518935	pHIT000118933	0	-	5497369	5518935	0	4	86,130,208,260	0,15723,19555,21306
chr19	5500949	5501463	HeLa_polyA+_Chen.28370	0	.	5500949	5501463	0	1	514	0
chr19	5502138	5502439	HeLa_polyA+_Chen.28373	0	.	5502138	5502439	0	1	301	0
chr19	5502564	5503058	HeLa_polyA+_Chen.28374	0	.	5502564	5503058	0	1	494	0
chr19	5502748	5512629	H1_polyA+.90520	0	-	5502748	5512629	0	2	194,1022	0,8859
chr19	5506289	5507250	REMC_MyoepithelialBreast.72026	0	.	5506289	5507250	0	1	961	0
chr19	5506465	5507305	REMC_BreastStem.39365	0	.	5506465	5507305	0	1	840	0
chr19	5507453	5510370	B_Cells_Pritchard.2511087	0	-	5507453	5510370	0	2	66,1171	0,1746
chr19	5508990	5510293	CD4_Plagnol_activated.50688	0	.	5508990	5510293	0	1	1303	0
chr19	5508994	5510358	melanoma_Garraway_short_term_cultures.53044	0	.	5508994	5510358	0	1	1364	0
chr19	5509023	5518935	pHIT000118935	0	-	5509023	5518935	0	2	43,260	0,9652
chr19	5509139	5510376	MCF10A_Thompson.16792	0	.	5509139	5510376	0	1	1237	0
chr19	5509163	5510391	HIT000098664	0	-	5509163	5510391	0	1	1228	0
chr19	5509163	5519012	HIT000094465	0	-	5509163	5519012	0	3	3247,130,337	0,3929,9512
chr19	5509177	5519045	ENST00000448587	0	-	5509177	5519045	0	3	3233,130,370	0,3915,9498
chr19	5509177	5519037	ZR751_Thompson.19003	0	-	5509177	5519037	0	3	3233,130,362	0,3915,9498
chr19	5509177	5519005	NR_027064	0	-	5509177	5519005	0	3	3233,130,330	0,3915,9498
chr19	5509178	5519005	Rinn_00026760	0	-	5509178	5519005	0	3	3232,131,331	0,3913,9496
chr19	5509181	5519026	MCF7_Burge_Thompson.24839	0	-	5509181	5519026	0	3	3229,130,351	0,3911,9494
chr19	5509184	5510379	MDAMB468_Thompson.18738	0	.	5509184	5510379	0	1	1195	0
chr19	5509184	5510351	HeLa_polyA+_Chen.28376	0	.	5509184	5510351	0	1	1167	0
chr19	5509184	5510358	H1_polyA+.90517	0	.	5509184	5510358	0	1	1174	0
chr19	5509191	5510374	BT474_Burge_Thompson.26746	0	.	5509191	5510374	0	1	1183	0
chr19	5509196	5515069	prostate_normal.45614	0	-	5509196	5515069	0	2	1183,9	0,5864
chr19	5509196	5510363	B_cells_Cheung.150781	0	.	5509196	5510363	0	1	1167	0
chr19	5509201	5510363	BT20_Thompson.16914	0	.	5509201	5510363	0	1	1162	0
chr19	5509203	5510293	brain_AmbionMAQC.34464	0	.	5509203	5510293	0	1	1090	0
chr19	5509213	5515104	HME_Burge.32373	0	-	5509213	5515104	0	2	1166,44	0,5847
chr19	5509237	5510359	NEC_from_H9.58404	0	.	5509237	5510359	0	1	1122	0
chr19	5509286	5510065	MeI_Garraway.13882	0	.	5509286	5510065	0	1	779	0
chr19	5509452	5510329	HepG2_Caltech_ENCODE.28940	0	.	5509452	5510329	0	1	877	0
chr19	5510363	5518965	HIT000082250	0	-	5510363	5518965	0	3	2047,130,290	0,2729,8312
chr19	5510593	5519012	HeLa_polyA+_Chen.28378	0	-	5510593	5519012	0	3	1817,130,337	0,2499,8082
chr19	5510598	5512629	H1_polyA+.90519	0	.	5510598	5512629	0	1	2031	0
chr19	5510608	5512414	brain_AmbionMAQC.34465	0	.	5510608	5512414	0	1	1806	0
chr19	5510609	5512417	BT20_Thompson.16915	0	.	5510609	5512417	0	1	1808	0
chr19	5510612	5519041	BT474_Burge_Thompson.26747	0	-	5510612	5519041	0	3	1798,130,366	0,2480,8063
chr19	5510620	5512272	HepG2_Caltech_ENCODE.28941	0	.	5510620	5512272	0	1	1652	0
chr19	5510623	5518992	prostate_normal.45615	0	-	5510623	5518992	0	3	1787,130,317	0,2469,8052
chr19	5510627	5519017	MDAMB468_Thompson.18739	0	-	5510627	5519017	0	3	1783,130,342	0,2465,8048
chr19	5510628	5513446	B_Cells_Pritchard.2511145	0	+	5510628	5513446	0	1	2818	0
chr19	5510628	5513446	B_Cells_Pritchard.2511143	0	-	5510628	5513446	0	2	1782,354	0,2464
chr19	5510647	5512415	T47D_Burge_Thompson.22961	0	.	5510647	5512415	0	1	1768	0
chr19	5510650	5519024	MCF10A_Thompson.16793	0	-	5510650	5519024	0	3	1760,130,349	0,2442,8025
chr19	5510785	5511886	HME_Burge.32374	0	.	5510785	5511886	0	1	1101	0
chr19	5510802	5511748	HeLa_polyA-_Chen.15410	0	.	5510802	5511748	0	1	946	0
chr19	5510882	5513421	Rinn_00027166	0	-	5510882	5513421	0	2	1528,330	0,2209
chr19	5511125	5511486	NEC_from_H9.58403	0	.	5511125	5511486	0	1	361	0
chr19	5511194	5513205	HIT000388178	0	-	5511194	5513205	0	2	1216,113	0,1898
chr19	5511230	5519045	HIT000242957	0	-	5511230	5519045	0	3	1180,130,370	0,1862,7445
chr19	5511257	5512619	CD4_Plagnol_resting.49274	0	.	5511257	5512619	0	1	1362	0
chr19	5511308	5518861	HIT000271127	0	-	5511308	5518861	0	3	1102,130,186	0,1784,7367
chr19	5511352	5512419	MIP101.54188	0	.	5511352	5512419	0	1	1067	0
chr19	5511354	5512255	melanoma_Garraway_short_term_cultures.53045	0	.	5511354	5512255	0	1	901	0
chr19	5511430	5511896	A549_Myers.66567	0	.	5511430	5511896	0	1	466	0
chr19	5511538	5512393	NEC_from_H9.58406	0	.	5511538	5512393	0	1	855	0
chr19	5511799	5512215	HeLa_polyA-_Chen.15411	0	.	5511799	5512215	0	1	416	0
chr19	5511965	5512354	HME_Burge.32375	0	.	5511965	5512354	0	1	389	0
chr19	5512354	5519027	HME_Burge.32376	0	-	5512354	5519027	0	3	56,130,352	0,738,6321
chr19	5513076	5519012	BT20_Thompson.16916	0	-	5513076	5519012	0	2	146,337	0,5599
chr19	5514093	5514656	MIP101.54190	0	.	5514093	5514656	0	1	563	0
chr19	5514956	5515614	B_Cells_Pritchard.2511147	0	.	5514956	5515614	0	1	658	0
chr19	5514958	5515739	B_cells_Cheung.151602	0	.	5514958	5515739	0	1	781	0
chr19	5514965	5515524	prostate_carcinoma.77137	0	.	5514965	5515524	0	1	559	0
chr19	5514981	5515585	CD4_Plagnol_activated.50691	0	.	5514981	5515585	0	1	604	0
chr19	5514997	5516082	REMC_BreastStem.39487	0	.	5514997	5516082	0	1	1085	0
chr19	5515859	5517263	H1_polyA+.90521	0	.	5515859	5517263	0	1	1404	0
chr19	5515940	5516672	CD4_Plagnol_activated.50692	0	.	5515940	5516672	0	1	732	0
chr19	5516150	5517060	CD4_Plagnol_resting.49276	0	.	5516150	5517060	0	1	910	0
chr19	5516228	5517054	B_Cells_Pritchard.2511151	0	.	5516228	5517054	0	1	826	0
chr19	5516245	5518180	MIP101.54191	0	.	5516245	5518180	0	1	1935	0
chr19	5516856	5518526	B_cells_Cheung.151604	0	.	5516856	5518526	0	1	1670	0
chr19	5517097	5518668	melanoma_Garraway_short_term_cultures.53046	0	.	5517097	5518668	0	1	1571	0
chr19	5517099	5518566	REMC_BreastStem.39489	0	.	5517099	5518566	0	1	1467	0
chr19	5517121	5517628	CD4_Plagnol_resting.49275	0	.	5517121	5517628	0	1	507	0
chr19	5517166	5517961	B_Cells_Pritchard.2511153	0	.	5517166	5517961	0	1	795	0
chr19	5517479	5518216	H1_polyA+.90522	0	.	5517479	5518216	0	1	737	0
chr19	5517689	5518393	MDAMB468_Thompson.18740	0	.	5517689	5518393	0	1	704	0
chr19	5518347	5519138	A549_Myers.66568	0	.	5518347	5519138	0	1	791	0
chr19	5518673	5519037	H1_polyA+.90523	0	.	5518673	5519037	0	1	364	0
chr19	5518695	5519016	MB435_Burge.33835	0	.	5518695	5519016	0	1	321	0
chr19	5518749	5519586	B_Cells_Pritchard.2511157	0	.	5518749	5519586	0	1	837	0
chr19	5519081	5519764	REMC_BreastStem.39490	0	.	5519081	5519764	0	1	683	0
chr19	5520060	5521686	REMC_LuminalBreast.77797	0	.	5520060	5521686	0	1	1626	0
chr19	5520191	5520849	REMC_BreastStem.39491	0	.	5520191	5520849	0	1	658	0
chr19	5528097	5530731	REMC_BreastStem.39496	0	.	5528097	5530731	0	1	2634	0
chr19	5528518	5529877	B_cells_Cheung.151612	0	.	5528518	5529877	0	1	1359	0
chr19	5529337	5529802	CD4_Plagnol_activated.50695	0	.	5529337	5529802	0	1	465	0
chr19	5530288	5531920	B_cells_Cheung.151613	0	.	5530288	5531920	0	1	1632	0
chr19	5530349	5531901	CD4_Plagnol_resting.49280	0	.	5530349	5531901	0	1	1552	0
chr19	5530421	5531903	CD4_Plagnol_activated.50696	0	.	5530421	5531903	0	1	1482	0
chr19	5530834	5535877	REMC_BreastStem.39497	0	.	5530834	5535877	0	1	5043	0
chr19	5532445	5533911	B_cells_Cheung.151615	0	.	5532445	5533911	0	1	1466	0
chr19	5532474	5533893	CD4_Plagnol_activated.50697	0	.	5532474	5533893	0	1	1419	0
chr19	5532532	5533747	melanoma_Garraway_short_term_cultures.53048	0	.	5532532	5533747	0	1	1215	0
chr19	5532847	5533817	CD4_Plagnol_resting.49284	0	.	5532847	5533817	0	1	970	0
chr19	5536097	5536554	CD4_Plagnol_resting.49285	0	.	5536097	5536554	0	1	457	0
chr19	5623822	5625229	B_Cells_Pritchard.2513767	0	+	5623822	5625229	0	1	1407	0
chr19	5623876	5624750	melanoma_Garraway_short_term_cultures.53064	0	.	5623876	5624750	0	1	874	0
chr19	5624546	5625186	CD4_Plagnol_activated.50785	0	.	5624546	5625186	0	1	640	0
chr19	5625813	5627062	melanoma_Garraway_short_term_cultures.53065	0	.	5625813	5627062	0	1	1249	0
chr19	5625825	5626252	prostate_normal.45628	0	.	5625825	5626252	0	1	427	0
chr19	5625838	5626459	A549_Myers.66586	0	.	5625838	5626459	0	1	621	0
chr19	5626241	5627149	HeLa_polyA+_Chen.28383	0	.	5626241	5627149	0	1	908	0
chr19	5626877	5627680	HepG2_Caltech_ENCODE.29059	0	.	5626877	5627680	0	1	803	0
chr19	5743361	5745959	REMC_LuminalBreast.77761	0	.	5743361	5745959	0	1	2598	0
chr19	5748845	5751993	liver_polyA+.104544	0	+	5748845	5751993	0	3	437,61,1421	0,762,1727
chr19	5748901	5750399	REMC_LuminalBreast.77763	0	.	5748901	5750399	0	1	1498	0
chr19	5750151	5751993	liver_polyA+.104542	0	.	5750151	5751993	0	1	1842	0
chr19	5750558	5753307	REMC_LuminalBreast.77764	0	.	5750558	5753307	0	1	2749	0
chr19	5753473	5754894	REMC_LuminalBreast.77765	0	.	5753473	5754894	0	1	1421	0
chr19	5753521	5754064	B_Cells_Pritchard.2511607	0	.	5753521	5754064	0	1	543	0
chr19	5755181	5755955	REMC_LuminalBreast.77766	0	.	5755181	5755955	0	1	774	0
chr19	5755993	5756408	B_Cells_Pritchard.2511621	0	.	5755993	5756408	0	1	415	0
chr19	5756075	5756792	liver_polyA+.104550	0	.	5756075	5756792	0	1	717	0
chr19	5756082	5756460	colon_Burge.30029	0	.	5756082	5756460	0	1	378	0
chr19	5756620	5759748	REMC_LuminalBreast.77767	0	.	5756620	5759748	0	1	3128	0
chr19	5756795	5757190	A549_Myers.66525	0	.	5756795	5757190	0	1	395	0
chr19	5757631	5758421	prostate_carcinoma.77023	0	.	5757631	5758421	0	1	790	0
chr19	5757907	5758641	H1_rRNA-depleted_UCSD_REMC.67524	0	.	5757907	5758641	0	1	734	0
chr19	5759981	5762045	REMC_LuminalBreast.77768	0	.	5759981	5762045	0	1	2064	0
chr19	5762195	5764261	liver_polyA+.104559	0	+	5762195	5764261	0	3	436,65,1078	0,804,988
chr19	5763162	5766603	REMC_LuminalBreast.77770	0	.	5763162	5766603	0	1	3441	0
chr19	5763186	5764320	H1_polyA+.90443	0	.	5763186	5764320	0	1	1134	0
chr19	5763204	5763609	HepG2_Caltech_ENCODE.28956	0	.	5763204	5763609	0	1	405	0
chr19	5763230	5764103	prostate_carcinoma.77024	0	.	5763230	5764103	0	1	873	0
chr19	5763662	5764390	HepG2_Caltech_ENCODE.28957	0	.	5763662	5764390	0	1	728	0
chr19	5764999	5766433	liver_polyA+.104561	0	.	5764999	5766433	0	1	1434	0
chr19	5765356	5766433	B_Cells_Pritchard.2511657	0	.	5765356	5766433	0	1	1077	0
chr19	5766832	5771041	REMC_LuminalBreast.77771	0	.	5766832	5771041	0	1	4209	0
chr19	5767686	5768087	B_Cells_Pritchard.2511663	0	.	5767686	5768087	0	1	401	0
chr19	5767740	5768386	HepG2_Caltech_ENCODE.28958	0	.	5767740	5768386	0	1	646	0
chr19	5767812	5768176	liver_polyA+.104563	0	.	5767812	5768176	0	1	364	0
chr19	5769237	5770151	melanoma_Garraway_short_term_cultures.53090	0	.	5769237	5770151	0	1	914	0
chr19	5769239	5770245	H1_polyA+.90448	0	.	5769239	5770245	0	1	1006	0
chr19	5769264	5770309	HepG2_Caltech_ENCODE.28959	0	.	5769264	5770309	0	1	1045	0
chr19	5769282	5770262	liver_polyA+.104565	0	.	5769282	5770262	0	1	980	0
chr19	5769307	5770269	prostate_carcinoma.77028	0	.	5769307	5770269	0	1	962	0
chr19	5769553	5770034	B_Cells_Pritchard.2511679	0	+	5769553	5770034	0	1	481	0
chr19	5769553	5770234	B_Cells_Pritchard.2511681	0	-	5769553	5770234	0	1	681	0
chr19	5771293	5772303	REMC_LuminalBreast.77772	0	.	5771293	5772303	0	1	1010	0
chr19	5771687	5772314	HepG2_Caltech_ENCODE.28960	0	.	5771687	5772314	0	1	627	0
chr19	5771688	5772035	melanoma_Garraway_short_term_cultures.53091	0	.	5771688	5772035	0	1	347	0
chr19	5771695	5772293	B_Cells_Pritchard.2511731	0	-	5771695	5772293	0	1	598	0
chr19	5771696	5772996	H1_polyA+.90449	0	.	5771696	5772996	0	1	1300	0
chr19	5771758	5772337	MeWo_Garraway.28503	0	.	5771758	5772337	0	1	579	0
chr19	5771778	5772775	kidney_Gilad.67188	0	-	5771778	5772775	0	2	355,186	0,811
chr19	5772633	5773670	B_Cells_Pritchard.2511739	0	-	5772633	5773670	0	1	1037	0
chr19	5829739	5831197	REMC_MyoepithelialBreast.72591	0	.	5829739	5831197	0	1	1458	0
chr19	5831664	5832480	REMC_MyoepithelialBreast.72592	0	.	5831664	5832480	0	1	816	0
chr19	5831735	5834146	REMC_LuminalBreast.77787	0	.	5831735	5834146	0	1	2411	0
chr19	5832617	5834249	REMC_MyoepithelialBreast.72593	0	.	5832617	5834249	0	1	1632	0
chr19	5834403	5835039	REMC_MyoepithelialBreast.72594	0	.	5834403	5835039	0	1	636	0
chr19	5836353	5838509	REMC_MyoepithelialBreast.72595	0	.	5836353	5838509	0	1	2156	0
chr19	5836383	5836732	B_Cells_Pritchard.2513549	0	+	5836383	5836732	0	1	349	0
chr19	5932254	5932611	B_cells_Cheung.150886	0	.	5932254	5932611	0	1	357	0
chr19	5933963	5935358	REMC_BreastStem.39451	0	.	5933963	5935358	0	1	1395	0
chr19	5941273	5941833	B_cells_Cheung.150894	0	.	5941273	5941833	0	1	560	0
chr19	5941459	5941832	A549_Myers.66548	0	.	5941459	5941832	0	1	373	0
chr19	5941571	5941890	CD4_Plagnol_resting.49305	0	.	5941571	5941890	0	1	319	0
chr19	6151080	6151405	B_cells_Cheung.150947	0	.	6151080	6151405	0	1	325	0
chr19	6155894	6158278	REMC_LuminalBreast.77837	0	.	6155894	6158278	0	1	2384	0
chr19	6155913	6156532	B_Cells_Pritchard.2513035	0	+	6155913	6156532	0	1	619	0
chr19	6294133	6294816	B_Cells_Pritchard.2513429	0	.	6294133	6294816	0	1	683	0
chr19	6294243	6295053	prostate_carcinoma.77121	0	.	6294243	6295053	0	1	810	0
chr19	6294243	6294563	CD4_Snyder.57917	0	.	6294243	6294563	0	1	320	0
chr19	6297581	6298082	CD4_Plagnol_activated.50865	0	.	6297581	6298082	0	1	501	0
chr19	6298171	6298647	CD4_Plagnol_resting.49327	0	.	6298171	6298647	0	1	476	0
chr19	6345757	6346268	B_Cells_Pritchard.2513517	0	.	6345757	6346268	0	1	511	0
chr19	6345763	6346240	H1_polyA+.90566	0	.	6345763	6346240	0	1	477	0
chr19	6345772	6346278	B_cells_Cheung.150994	0	.	6345772	6346278	0	1	506	0
chr19	6354140	6354773	H1_polyA+.90568	0	.	6354140	6354773	0	1	633	0
chr19	6460078	6461631	HIT000049005	0	-	6460078	6461631	0	1	1553	0
chr19	6460308	6460911	A549_Myers.66627	0	.	6460308	6460911	0	1	603	0
chr19	6461532	6461963	B_cells_Cheung.151011	0	.	6461532	6461963	0	1	431	0
chr19	6464978	6465398	B_cells_Cheung.151012	0	.	6464978	6465398	0	1	420	0
chr19	6466955	6469513	B_cells_Cheung.151014	0	-	6466955	6469513	0	2	1138,358	0,2200
chr19	6467005	6468753	B_Cells_Pritchard.2513657	0	.	6467005	6468753	0	1	1748	0
chr19	6467041	6467874	BT474_Burge_Thompson.26809	0	.	6467041	6467874	0	1	833	0
chr19	6467248	6468081	A549_Myers.66628	0	.	6467248	6468081	0	1	833	0
chr19	6468127	6468723	B_cells_Cheung.151016	0	.	6468127	6468723	0	1	596	0
chr19	6468775	6469513	B_cells_Cheung.151015	0	.	6468775	6469513	0	1	738	0
chr19	6468893	6469756	B_Cells_Pritchard.2513659	0	.	6468893	6469756	0	1	863	0
chr19	6472027	6472764	B_Cells_Pritchard.2513671	0	.	6472027	6472764	0	1	737	0
chr19	6473022	6480889	B_cells_Cheung.151018	0	+	6473022	6480889	0	2	220,1490	0,6377
chr19	6479342	6480889	B_cells_Cheung.151020	0	.	6479342	6480889	0	1	1547	0
chr19	6489529	6493127	REMC_MyoepithelialBreast.72231	0	.	6489529	6493127	0	1	3598	0
chr19	6490609	6490969	CD4_Plagnol_activated.50852	0	.	6490609	6490969	0	1	360	0
chr19	6491241	6492937	B_cells_Cheung.151028	0	.	6491241	6492937	0	1	1696	0
chr19	6494741	6499319	REMC_MyoepithelialBreast.72233	0	.	6494741	6499319	0	1	4578	0
chr19	6499535	6505112	REMC_BreastStem.39520	0	.	6499535	6505112	0	1	5577	0
chr19	6501118	6503531	REMC_MyoepithelialBreast.72235	0	.	6501118	6503531	0	1	2413	0
chr19	6501837	6503485	REMC_LuminalBreast.77881	0	.	6501837	6503485	0	1	1648	0
chr19	6501880	6503435	B_Cells_Pritchard.2522267	0	+	6501880	6503435	0	1	1555	0
chr19	6501905	6503435	B_cells_Cheung.151037	0	.	6501905	6503435	0	1	1530	0
chr19	6502728	6503285	A549_Myers.66634	0	.	6502728	6503285	0	1	557	0
chr19	6505214	6510741	REMC_BreastStem.39521	0	.	6505214	6510741	0	1	5527	0
chr19	6506240	6508512	REMC_LuminalBreast.77883	0	.	6506240	6508512	0	1	2272	0
chr19	6506315	6513868	B_Cells_Pritchard.2522283	0	+	6506315	6513868	0	3	1271,105,354	0,6095,7199
chr19	6507120	6508486	B_cells_Cheung.151041	0	.	6507120	6508486	0	1	1366	0
chr19	6507132	6508057	REMC_MyoepithelialBreast.72238	0	.	6507132	6508057	0	1	925	0
chr19	6510991	6511715	REMC_BreastStem.39522	0	.	6510991	6511715	0	1	724	0
chr19	6511167	6511658	B_cells_Cheung.151046	0	.	6511167	6511658	0	1	491	0
chr19	6511845	6516626	REMC_BreastStem.39523	0	.	6511845	6516626	0	1	4781	0
chr19	6514601	6516187	B_Cells_Pritchard.2522297	0	+	6514601	6516187	0	1	1586	0
chr19	6514608	6516171	B_cells_Cheung.151050	0	.	6514608	6516171	0	1	1563	0
chr19	6514661	6516232	REMC_LuminalBreast.77886	0	.	6514661	6516232	0	1	1571	0
chr19	6524457	6528366	REMC_BreastStem.39528	0	.	6524457	6528366	0	1	3909	0
chr19	6524461	6525728	B_cells_Cheung.151060	0	.	6524461	6525728	0	1	1267	0
chr19	6524462	6525834	REMC_MyoepithelialBreast.72243	0	.	6524462	6525834	0	1	1372	0
chr19	6524466	6525770	REMC_LuminalBreast.77888	0	.	6524466	6525770	0	1	1304	0
chr19	6525990	6526755	REMC_LuminalBreast.77889	0	.	6525990	6526755	0	1	765	0
chr19	6529865	6530303	H1_polyA+.90598	0	.	6529865	6530303	0	1	438	0
chr19	6561920	6562604	B_cells_Cheung.151074	0	.	6561920	6562604	0	1	684	0
chr19	6568196	6568522	B_cells_Cheung.151079	0	.	6568196	6568522	0	1	326	0
chr19	6570870	6571315	HeLa_polyA+_Chen.28470	0	.	6570870	6571315	0	1	445	0
chr19	6601406	6602163	REMC_LuminalBreast.77894	0	.	6601406	6602163	0	1	757	0
chr19	6605312	6606360	B_Cells_Pritchard.2522641	0	+	6605312	6606360	0	1	1048	0
chr19	6607499	6608165	REMC_LuminalBreast.77898	0	.	6607499	6608165	0	1	666	0
chr19	6607515	6608158	REMC_BreastStem.39534	0	.	6607515	6608158	0	1	643	0
chr19	6607525	6608176	B_cells_Cheung.151115	0	.	6607525	6608176	0	1	651	0
chr19	6607532	6608030	CD4_Plagnol_activated.50863	0	.	6607532	6608030	0	1	498	0
chr19	6607548	6608035	B_Cells_Pritchard.2522651	0	-	6607548	6608035	0	1	487	0
chr19	6608282	6608967	B_cells_Cheung.151116	0	.	6608282	6608967	0	1	685	0
chr19	6608310	6608996	REMC_LuminalBreast.77899	0	.	6608310	6608996	0	1	686	0
chr19	6608347	6609008	REMC_BreastStem.39535	0	.	6608347	6609008	0	1	661	0
chr19	6608402	6608946	CD4_Plagnol_activated.50864	0	.	6608402	6608946	0	1	544	0
chr19	6608533	6608957	B_Cells_Pritchard.2522655	0	-	6608533	6608957	0	1	424	0
chr19	6609143	6610498	REMC_LuminalBreast.77900	0	.	6609143	6610498	0	1	1355	0
chr19	6609154	6610124	REMC_BreastStem.39536	0	.	6609154	6610124	0	1	970	0
chr19	6609173	6610368	B_cells_Cheung.151117	0	.	6609173	6610368	0	1	1195	0
chr19	6610610	6612495	B_cells_Cheung.151118	0	.	6610610	6612495	0	1	1885	0
chr19	6610997	6612055	REMC_BreastStem.39537	0	.	6610997	6612055	0	1	1058	0
chr19	6621830	6623361	prostate_carcinoma.77325	0	+	6621830	6623361	0	2	579,9	0,1522
chr19	6624598	6626890	REMC_MyoepithelialBreast.72254	0	.	6624598	6626890	0	1	2292	0
chr19	6625507	6626934	HepG2_Caltech_ENCODE.30655	0	.	6625507	6626934	0	1	1427	0
chr19	6625552	6626406	MCF10A_Thompson.17365	0	.	6625552	6626406	0	1	854	0
chr19	6625565	6626460	HeLa_polyA+_Chen.28474	0	.	6625565	6626460	0	1	895	0
chr19	6721181	6721860	REMC_MyoepithelialBreast.72267	0	.	6721181	6721860	0	1	679	0
chr19	6721415	6721998	REMC_BreastStem.39554	0	.	6721415	6721998	0	1	583	0
chr19	7246214	7246676	B_cells_Cheung.151252	0	.	7246214	7246676	0	1	462	0
chr19	7302012	7302359	prostate_normal.45771	0	.	7302012	7302359	0	1	347	0
chr19	7302074	7302723	B_cells_Cheung.151254	0	.	7302074	7302723	0	1	649	0
chr19	7302117	7302717	prostate_carcinoma.77261	0	-	7302117	7302717	0	2	131,454	0,146
chr19	7302258	7302711	B_Cells_Pritchard.2514937	0	.	7302258	7302711	0	1	453	0
chr19	7302793	7304909	REMC_LuminalBreast.78015	0	.	7302793	7304909	0	1	2116	0
chr19	7304262	7304964	B_Cells_Pritchard.2514945	0	.	7304262	7304964	0	1	702	0
chr19	7307127	7308513	B_Cells_Pritchard.2514955	0	.	7307127	7308513	0	1	1386	0
chr19	7307129	7307542	BT474_Burge_Thompson.26831	0	.	7307129	7307542	0	1	413	0
chr19	7307136	7309134	prostate_carcinoma.77264	0	.	7307136	7309134	0	1	1998	0
chr19	7315670	7316311	B_Cells_Pritchard.2514973	0	+	7315670	7316311	0	1	641	0
chr19	7317255	7318129	B_cells_Cheung.151260	0	.	7317255	7318129	0	1	874	0
chr19	7317360	7317991	H1_polyA+.90724	0	.	7317360	7317991	0	1	631	0
chr19	7317365	7317913	prostate_carcinoma.77265	0	.	7317365	7317913	0	1	548	0
chr19	7443722	7444247	NR_024491	0	-	7443722	7444247	0	1	525	0
chr19	7444624	7444977	B_cells_Cheung.151332	0	.	7444624	7444977	0	1	353	0
chr19	7444632	7444979	CD4_Plagnol_resting.49894	0	.	7444632	7444979	0	1	347	0
chr19	7533593	7534281	B_Cells_Pritchard.2515853	0	-	7533593	7534281	0	1	688	0
chr19	7533762	7534272	B_cells_Cheung.151378	0	.	7533762	7534272	0	1	510	0
chr19	7535807	7536727	B_Cells_Pritchard.2515863	0	-	7535807	7536727	0	1	920	0
chr19	7548762	7549421	B_Cells_Pritchard.2515595	0	.	7548762	7549421	0	1	659	0
chr19	7620849	7621612	B_cells_Cheung.151387	0	.	7620849	7621612	0	1	763	0
chr19	7656021	7657383	H9_polyA+.34924	0	.	7656021	7657383	0	1	1362	0
chr19	7656073	7657558	brain_AmbionMAQC.34578	0	.	7656073	7657558	0	1	1485	0
chr19	7656089	7657352	CD4_Plagnol_resting.49472	0	.	7656089	7657352	0	1	1263	0
chr19	7656108	7658073	REMC_LuminalBreast.78075	0	.	7656108	7658073	0	1	1965	0
chr19	7656117	7656858	HeLa_polyA+_Chen.28510	0	.	7656117	7656858	0	1	741	0
chr19	7656136	7657390	MCF7_Burge_Thompson.24932	0	.	7656136	7657390	0	1	1254	0
chr19	7656149	7657383	MIP101.54234	0	.	7656149	7657383	0	1	1234	0
chr19	7656232	7657391	CD4_Plagnol_activated.51043	0	.	7656232	7657391	0	1	1159	0
chr19	7656455	7657391	prostate_carcinoma.77455	0	.	7656455	7657391	0	1	936	0
chr19	7656544	7657393	lymph_node_Burge.39664	0	.	7656544	7657393	0	1	849	0
chr19	7656557	7657207	HepG2_Caltech_ENCODE.29066	0	.	7656557	7657207	0	1	650	0
chr19	7656637	7657393	BT474_Burge_Thompson.26845	0	.	7656637	7657393	0	1	756	0
chr19	7656706	7657363	REMC_MyoepithelialBreast.72304	0	.	7656706	7657363	0	1	657	0
chr19	7657656	7658574	brain_AmbionMAQC.34579	0	.	7657656	7658574	0	1	918	0
chr19	7657706	7658576	BT474_Burge_Thompson.26846	0	.	7657706	7658576	0	1	870	0
chr19	7657874	7658578	HeLa_polyA+_Chen.28512	0	.	7657874	7658578	0	1	704	0
chr19	7657928	7658545	CD4_Plagnol_activated.51044	0	.	7657928	7658545	0	1	617	0
chr19	7657931	7658576	prostate_carcinoma.77460	0	.	7657931	7658576	0	1	645	0
chr19	7657940	7658561	prostate_normal.45902	0	.	7657940	7658561	0	1	621	0
chr19	7657968	7658579	MCF7_Burge_Thompson.24931	0	.	7657968	7658579	0	1	611	0
chr19	7658017	7658571	lymph_node_Burge.39665	0	.	7658017	7658571	0	1	554	0
chr19	7658023	7658572	H9_polyA+.34925	0	.	7658023	7658572	0	1	549	0
chr19	7658023	7658525	colon_Burge.30200	0	.	7658023	7658525	0	1	502	0
chr19	7658030	7658489	MIP101.54235	0	.	7658030	7658489	0	1	459	0
chr19	7675152	7677463	B_Cells_Pritchard.2523183	0	+	7675152	7677463	0	2	204,1218	0,1093
chr19	7689417	7689853	B_cells_Cheung.151418	0	.	7689417	7689853	0	1	436	0
chr19	7696636	7697886	B_cells_Cheung.151426	0	.	7696636	7697886	0	1	1250	0
chr19	7762229	7762839	brain_AmbionMAQC.34588	0	.	7762229	7762839	0	1	610	0
chr19	7770701	7771491	brain_AmbionMAQC.34593	0	.	7770701	7771491	0	1	790	0
chr19	7787253	7787832	B_Cells_Pritchard.2516143	0	-	7787253	7787832	0	1	579	0
chr19	7790902	7791560	B_cells_Cheung.151445	0	.	7790902	7791560	0	1	658	0
chr19	7790908	7792441	B_Cells_Pritchard.2516155	0	.	7790908	7792441	0	1	1533	0
chr19	7838014	7838579	A549_Myers.66736	0	.	7838014	7838579	0	1	565	0
chr19	7838192	7838579	B_Cells_Pritchard.2516233	0	.	7838192	7838579	0	1	387	0
chr19	8164545	8165121	B_cells_Cheung.151517	0	.	8164545	8165121	0	1	576	0
chr19	8165359	8166663	B_cells_Cheung.151518	0	.	8165359	8166663	0	1	1304	0
chr19	8167196	8167616	B_cells_Cheung.151519	0	.	8167196	8167616	0	1	420	0
chr19	8234831	8237538	B_cells_Cheung.151535	0	.	8234831	8237538	0	1	2707	0
chr19	8234859	8237339	brain_AmbionMAQC.34634	0	.	8234859	8237339	0	1	2480	0
chr19	8234895	8235687	BT474_Burge_Thompson.26901	0	.	8234895	8235687	0	1	792	0
chr19	8234955	8235683	MDAMB468_Thompson.18854	0	.	8234955	8235683	0	1	728	0
chr19	8238106	8238901	REMC_MyoepithelialBreast.72355	0	.	8238106	8238901	0	1	795	0
chr19	8238218	8238798	REMC_LuminalBreast.78140	0	.	8238218	8238798	0	1	580	0
chr19	8238240	8238841	B_cells_Cheung.151537	0	.	8238240	8238841	0	1	601	0
chr19	8239542	8241612	REMC_BreastStem.39595	0	.	8239542	8241612	0	1	2070	0
chr19	8239978	8241342	REMC_LuminalBreast.78141	0	.	8239978	8241342	0	1	1364	0
chr19	8316994	8324123	REMC_LuminalBreast.78154	0	.	8316994	8324123	0	1	7129	0
chr19	8322386	8324094	REMC_MyoepithelialBreast.72366	0	.	8322386	8324094	0	1	1708	0
chr19	8322486	8323496	REMC_BreastStem.39609	0	.	8322486	8323496	0	1	1010	0
chr19	8322838	8323505	H1_polyA+.91032	0	.	8322838	8323505	0	1	667	0
chr19	8323062	8323809	B_cells_Cheung.151563	0	.	8323062	8323809	0	1	747	0
chr19	8324852	8325561	REMC_BreastStem.39610	0	.	8324852	8325561	0	1	709	0
chr19	8328879	8329339	B_cells_Cheung.151567	0	.	8328879	8329339	0	1	460	0
chr19	8328924	8332317	REMC_LuminalBreast.78156	0	.	8328924	8332317	0	1	3393	0
chr19	8332817	8334517	kidney_Gilad.67594	0	-	8332817	8334517	0	2	95,620	0,1080
chr19	8346650	8347217	HepG2_Caltech_ENCODE.29108	0	.	8346650	8347217	0	1	567	0
chr19	8347622	8349047	B_cells_Cheung.151577	0	.	8347622	8349047	0	1	1425	0
chr19	8348224	8348934	H1_polyA+.91040	0	.	8348224	8348934	0	1	710	0
chr19	8349710	8353723	REMC_MyoepithelialBreast.72379	0	.	8349710	8353723	0	1	4013	0
chr19	8350212	8351222	H1_polyA+.91043	0	.	8350212	8351222	0	1	1010	0
chr19	8350231	8351205	HepG2_Caltech_ENCODE.29109	0	.	8350231	8351205	0	1	974	0
chr19	8350261	8351249	K562.34971	0	.	8350261	8351249	0	1	988	0
chr19	8353856	8354252	REMC_LuminalBreast.78162	0	.	8353856	8354252	0	1	396	0
chr19	8353860	8354249	REMC_MyoepithelialBreast.72380	0	.	8353860	8354249	0	1	389	0
chr19	8354863	8355585	HepG2_Caltech_ENCODE.29111	0	.	8354863	8355585	0	1	722	0
chr19	8356965	8359251	K562.34972	0	.	8356965	8359251	0	1	2286	0
chr19	8357599	8358698	H1_polyA+.91046	0	.	8357599	8358698	0	1	1099	0
chr19	8377185	8377906	CD4_Plagnol_activated.51168	0	.	8377185	8377906	0	1	721	0
chr19	8377240	8377869	H1_polyA+.91052	0	.	8377240	8377869	0	1	629	0
chr19	8377262	8377830	REMC_BreastStem.39628	0	.	8377262	8377830	0	1	568	0
chr19	8377305	8377960	HepG2_Caltech_ENCODE.29115	0	.	8377305	8377960	0	1	655	0
chr19	8380879	8382859	REMC_BreastStem.39631	0	.	8380879	8382859	0	1	1980	0
chr19	8381377	8382044	B_cells_Cheung.151598	0	.	8381377	8382044	0	1	667	0
chr19	8381540	8382044	CD4_Plagnol_resting.49612	0	.	8381540	8382044	0	1	504	0
chr19	8412722	8413196	MIP101.54276	0	.	8412722	8413196	0	1	474	0
chr19	8412739	8413321	B_Cells_Pritchard.2520419	0	-	8412739	8413321	0	1	582	0
chr19	8476615	8477495	A549_Myers.66821	0	.	8476615	8477495	0	1	880	0
chr19	8489365	8489823	B_cells_Cheung.151658	0	.	8489365	8489823	0	1	458	0
chr19	8489531	8489832	prostate_carcinoma.77779	0	.	8489531	8489832	0	1	301	0
chr19	8549346	8550098	MIP101.54313	0	.	8549346	8550098	0	1	752	0
chr19	8549349	8549905	prostate_carcinoma.77794	0	.	8549349	8549905	0	1	556	0
chr19	8626428	8626766	B_Cells_Pritchard.2517763	0	.	8626428	8626766	0	1	338	0
chr19	8632769	8633234	B_Cells_Pritchard.2517795	0	.	8632769	8633234	0	1	465	0
chr19	8634369	8634862	B_Cells_Pritchard.2517801	0	.	8634369	8634862	0	1	493	0
chr19	8648654	8649362	K562.34987	0	.	8648654	8649362	0	1	708	0
chr19	8649470	8651424	K562.34988	0	.	8649470	8651424	0	1	1954	0
chr19	8649560	8651270	CD4_Plagnol_activated.51203	0	.	8649560	8651270	0	1	1710	0
chr19	8714178	8716573	pHIT000119072	0	-	8714178	8716573	0	4	627,68,65,77	0,863,1169,2318
chr19	8721638	8745282	pHIT000119073	0	-	8721638	8745282	0	17	627,68,65,354,284,17,65,354,284,68,65,354,235,310,68,65,77	0,863,1169,2322,7821,8392,8647,9800,15294,15814,16120,17273,21105,21566,22112,22418,23567
chr19	8761775	8762165	B_Cells_Pritchard.2518031	0	+	8761775	8762165	0	1	390	0
chr19	8778380	8779599	MIP101.54317	0	.	8778380	8779599	0	1	1219	0
chr19	8778396	8779628	B_cells_Cheung.151703	0	.	8778396	8779628	0	1	1232	0
chr19	8778402	8779416	B_Cells_Pritchard.2518067	0	+	8778402	8779416	0	1	1014	0
chr19	8778933	8779516	K562.34990	0	.	8778933	8779516	0	1	583	0
chr19	9916832	9917560	MCF7_Burge_Thompson.25108	0	.	9916832	9917560	0	1	728	0
chr19	9999336	9999674	A549_Myers.66924	0	.	9999336	9999674	0	1	338	0
chr19	10010206	10011490	kidney_Gilad.67781	0	.	10010206	10011490	0	1	1284	0
chr19	10050629	10051099	B_cells_Cheung.152017	0	.	10050629	10051099	0	1	470	0
chr19	10096028	10096563	CD4_Plagnol_activated.53291	0	.	10096028	10096563	0	1	535	0
chr19	10096738	10097098	CD4_Plagnol_activated.53292	0	.	10096738	10097098	0	1	360	0
chr19	10174511	10175250	B_cells_Cheung.168267	0	.	10174511	10175250	0	1	739	0
chr19	10175927	10176924	REMC_LuminalBreast.78622	0	.	10175927	10176924	0	1	997	0
chr19	10177921	10179805	B_cells_Cheung.168272	0	.	10177921	10179805	0	1	1884	0
chr19	10177980	10179714	REMC_LuminalBreast.78623	0	.	10177980	10179714	0	1	1734	0
chr19	10178168	10179350	H1_polyA+.91374	0	.	10178168	10179350	0	1	1182	0
chr19	10178176	10178868	CD4_Plagnol_activated.53309	0	.	10178176	10178868	0	1	692	0
chr19	10188416	10189155	H1_polyA+.91376	0	.	10188416	10189155	0	1	739	0
chr19	10191145	10191809	REMC_LuminalBreast.78628	0	.	10191145	10191809	0	1	664	0
chr19	10207529	10208501	H1_polyA+.91381	0	.	10207529	10208501	0	1	972	0
chr19	10207887	10208299	BT474_Burge_Thompson.27354	0	.	10207887	10208299	0	1	412	0
chr19	10209425	10210511	B_Cells_Pritchard.2522481	0	+	10209425	10210511	0	1	1086	0
chr19	10209458	10210400	H1_polyA+.91382	0	.	10209458	10210400	0	1	942	0
chr19	10215887	10217881	B_cells_Cheung.168294	0	.	10215887	10217881	0	1	1994	0
chr19	10219738	10220950	H1_polyA+.91391	0	.	10219738	10220950	0	1	1212	0
chr19	10219775	10221466	B_cells_Cheung.168297	0	.	10219775	10221466	0	1	1691	0
chr19	10221712	10222278	H1_polyA+.91392	0	.	10221712	10222278	0	1	566	0
chr19	10233300	10234159	B_cells_Cheung.168301	0	.	10233300	10234159	0	1	859	0
chr19	10318022	10319927	REMC_LuminalBreast.78389	0	.	10318022	10319927	0	1	1905	0
chr19	10318130	10319338	REMC_MyoepithelialBreast.72655	0	.	10318130	10319338	0	1	1208	0
chr19	10319256	10320196	B_cells_Cheung.168347	0	.	10319256	10320196	0	1	940	0
chr19	10319499	10320751	REMC_MyoepithelialBreast.72656	0	.	10319499	10320751	0	1	1252	0
chr19	10354266	10357351	REMC_BreastStem.39802	0	.	10354266	10357351	0	1	3085	0
chr19	10355328	10358232	REMC_LuminalBreast.78397	0	.	10355328	10358232	0	1	2904	0
chr19	10376720	10377668	H1_polyA+.91235	0	.	10376720	10377668	0	1	948	0
chr19	10379334	10381209	H1_polyA+.91237	0	.	10379334	10381209	0	1	1875	0
chr19	10379450	10381547	B_cells_Cheung.168379	0	.	10379450	10381547	0	1	2097	0
chr19	10379483	10381250	B_Cells_Pritchard.2527033	0	+	10379483	10381250	0	1	1767	0
chr19	10380688	10381045	MDAMB468_Thompson.18972	0	.	10380688	10381045	0	1	357	0
chr19	10381468	10382261	H1_polyA+.91238	0	.	10381468	10382261	0	1	793	0
chr19	10381819	10382289	B_cells_Cheung.168381	0	.	10381819	10382289	0	1	470	0
chr19	10385428	10385962	H1_polyA+.91241	0	.	10385428	10385962	0	1	534	0
chr19	10385437	10385957	B_cells_Cheung.168385	0	.	10385437	10385957	0	1	520	0
chr19	10387271	10388093	H1_polyA+.91242	0	.	10387271	10388093	0	1	822	0
chr19	10443610	10444033	B_cells_Cheung.152039	0	.	10443610	10444033	0	1	423	0
chr19	10447837	10448173	B_cells_Cheung.152045	0	.	10447837	10448173	0	1	336	0
chr19	10449902	10451765	MIP101.54472	0	.	10449902	10451765	0	1	1863	0
chr19	10449948	10452044	REMC_BreastStem.39789	0	.	10449948	10452044	0	1	2096	0
chr19	10450063	10451509	REMC_LuminalBreast.78403	0	.	10450063	10451509	0	1	1446	0
chr19	10450371	10451824	B_cells_Cheung.152046	0	.	10450371	10451824	0	1	1453	0
chr19	10450955	10451521	BT474_Burge_Thompson.27024	0	.	10450955	10451521	0	1	566	0
chr19	10451053	10451829	REMC_MyoepithelialBreast.72638	0	.	10451053	10451829	0	1	776	0
chr19	10451137	10451550	MDAMB468_Thompson.18979	0	.	10451137	10451550	0	1	413	0
chr19	10453618	10454322	B_cells_Cheung.152047	0	.	10453618	10454322	0	1	704	0
chr19	10453766	10454267	REMC_LuminalBreast.78404	0	.	10453766	10454267	0	1	501	0
chr19	10481849	10482467	brain_AmbionMAQC.34867	0	.	10481849	10482467	0	1	618	0
chr19	10510833	10511745	B_Cells_Pritchard.2528049	0	-	10510833	10511745	0	1	912	0
chr19	10542304	10542648	B_cells_Cheung.152070	0	.	10542304	10542648	0	1	344	0
chr19	10572392	10572736	B_cells_Cheung.152074	0	.	10572392	10572736	0	1	344	0
chr19	11251676	11252010	B_Cells_Pritchard.2523431	0	.	11251676	11252010	0	1	334	0
chr19	11265470	11265922	A549_Myers.67103	0	.	11265470	11265922	0	1	452	0
chr19	11265533	11266063	B_Cells_Pritchard.2523477	0	.	11265533	11266063	0	1	530	0
chr19	11265537	11265898	BT474_Burge_Thompson.27101	0	.	11265537	11265898	0	1	361	0
chr19	11338534	11341665	B_cells_Cheung.152262	0	.	11338534	11341665	0	1	3131	0
chr19	11338795	11339977	H1_polyA+.91511	0	.	11338795	11339977	0	1	1182	0
chr19	11338812	11339720	REMC_MyoepithelialBreast.72769	0	.	11338812	11339720	0	1	908	0
chr19	11338973	11339781	REMC_LuminalBreast.78594	0	.	11338973	11339781	0	1	808	0
chr19	11339085	11339964	MCF7_Burge_Thompson.25191	0	.	11339085	11339964	0	1	879	0
chr19	11339090	11339608	T47D_Burge_Thompson.23279	0	.	11339090	11339608	0	1	518	0
chr19	11339110	11339763	melanoma_Garraway_short_term_cultures.53736	0	.	11339110	11339763	0	1	653	0
chr19	11339482	11339908	K562.35323	0	.	11339482	11339908	0	1	426	0
chr19	11340521	11341688	prostate_carcinoma.78210	0	.	11340521	11341688	0	1	1167	0
chr19	11342928	11343513	B_cells_Cheung.152264	0	.	11342928	11343513	0	1	585	0
chr19	11506025	11507930	REMC_MyoepithelialBreast.72798	0	.	11506025	11507930	0	1	1905	0
chr19	11506452	11507132	REMC_LuminalBreast.78662	0	.	11506452	11507132	0	1	680	0
chr19	11506459	11507723	B_cells_Cheung.152279	0	+	11506459	11507723	0	2	281,83	0,1181
chr19	11506485	11507818	REMC_BreastStem.39899	0	.	11506485	11507818	0	1	1333	0
chr19	11506494	11507816	Rinn_00026898	0	+	11506494	11507816	0	2	246,177	0,1145
chr19	11533635	11535819	B_cells_Cheung.152293	0	.	11533635	11535819	0	1	2184	0
chr19	11535002	11535579	prostate_carcinoma.78079	0	.	11535002	11535579	0	1	577	0
chr19	11539728	11541303	H1_polyA+.91547	0	.	11539728	11541303	0	1	1575	0
chr19	11553537	11554259	B_cells_Cheung.152311	0	.	11553537	11554259	0	1	722	0
chr19	12612820	12613638	BT474_Burge_Thompson.27327	0	.	12612820	12613638	0	1	818	0
chr19	12612900	12613528	melanoma_Garraway_short_term_cultures.53890	0	.	12612900	12613528	0	1	628	0
chr19	12655535	12656991	REMC_BreastStem.40058	0	.	12655535	12656991	0	1	1456	0
chr19	12655592	12657043	H1_polyA+.91891	0	.	12655592	12657043	0	1	1451	0
chr19	12656512	12657374	MIP101.55992	0	-	12656512	12657374	0	2	271,253	0,609
chr19	12657611	12658689	REMC_BreastStem.40059	0	.	12657611	12658689	0	1	1078	0
chr19	12657655	12658143	BT474_Burge_Thompson.27317	0	.	12657655	12658143	0	1	488	0
chr19	12657670	12658359	CD4_Plagnol_activated.51784	0	.	12657670	12658359	0	1	689	0
chr19	12657684	12658707	H1_polyA+.91892	0	.	12657684	12658707	0	1	1023	0
chr19	12657786	12658421	K562.35490	0	.	12657786	12658421	0	1	635	0
chr19	12657817	12658384	T47D_Burge_Thompson.23442	0	.	12657817	12658384	0	1	567	0
chr19	12657853	12658599	HeLa_polyA+_Chen.28787	0	.	12657853	12658599	0	1	746	0
chr19	12657906	12658493	melanoma_Garraway_short_term_cultures.53905	0	.	12657906	12658493	0	1	587	0
chr19	12697909	12701335	B_cells_Cheung.153931	0	.	12697909	12701335	0	1	3426	0
chr19	13132880	13138363	B_cells_Cheung.153109	0	.	13132880	13138363	0	1	5483	0
chr19	13133047	13137945	H1_polyA+.92142	0	.	13133047	13137945	0	1	4898	0
chr19	13135933	13138265	REMC_LuminalBreast.79244	0	.	13135933	13138265	0	1	2332	0
chr19	13136317	13136853	A549_Myers.67259	0	.	13136317	13136853	0	1	536	0
chr19	13138551	13142759	REMC_LuminalBreast.79040	0	.	13138551	13142759	0	1	4208	0
chr19	13139100	13140038	H1_polyA+.92145	0	.	13139100	13140038	0	1	938	0
chr19	13139275	13140027	B_cells_Cheung.153111	0	.	13139275	13140027	0	1	752	0
chr19	13139322	13139865	A549_Myers.67260	0	.	13139322	13139865	0	1	543	0
chr19	13139620	13140012	CD4_Snyder.58672	0	.	13139620	13140012	0	1	392	0
chr19	13140132	13141394	B_cells_Cheung.153112	0	.	13140132	13141394	0	1	1262	0
chr19	13140156	13142701	H1_polyA+.92146	0	.	13140156	13142701	0	1	2545	0
chr19	13143721	13145819	H1_polyA+.92148	0	.	13143721	13145819	0	1	2098	0
chr19	13144059	13145902	BT474_Burge_Thompson.27399	0	+	13144059	13145902	0	2	681,38	0,1805
chr19	13152540	13153105	H1_polyA+.92153	0	.	13152540	13153105	0	1	565	0
chr19	13152555	13154128	B_cells_Cheung.153121	0	.	13152555	13154128	0	1	1573	0
chr19	13165170	13165715	B_cells_Cheung.153123	0	.	13165170	13165715	0	1	545	0
chr19	13531212	13532546	H1_polyA+.92043	0	.	13531212	13532546	0	1	1334	0
chr19	13543027	13543331	BT474_Burge_Thompson.27414	0	.	13543027	13543331	0	1	304	0
chr19	13566659	13567263	H1_polyA+.92052	0	.	13566659	13567263	0	1	604	0
chr19	13569187	13570095	H1_polyA+.92054	0	.	13569187	13570095	0	1	908	0
chr19	13571093	13572152	BT474_Burge_Thompson.27419	0	.	13571093	13572152	0	1	1059	0
chr19	13642329	13644538	Rinn_00027198	0	-	13642329	13644538	0	2	1184,137	0,2072
chr19	13763353	13764322	REMC_BreastStem.40124	0	.	13763353	13764322	0	1	969	0
chr19	13763490	13765067	REMC_MyoepithelialBreast.73282	0	.	13763490	13765067	0	1	1577	0
chr19	13764636	13765196	B_cells_Cheung.153173	0	.	13764636	13765196	0	1	560	0
chr19	13805266	13805757	A549_Myers.67295	0	.	13805266	13805757	0	1	491	0
chr19	13805441	13806261	HME_Burge.33189	0	.	13805441	13806261	0	1	820	0
chr19	13805991	13807184	MDAMB468_Thompson.19207	0	.	13805991	13807184	0	1	1193	0
chr19	13806108	13806759	brain_AmbionMAQC.35243	0	.	13806108	13806759	0	1	651	0
chr19	13806146	13806837	ZR751_Thompson.19384	0	.	13806146	13806837	0	1	691	0
chr19	13806192	13807170	HepG2_Caltech_ENCODE.29522	0	.	13806192	13807170	0	1	978	0
chr19	13806232	13806826	breast_Burge.32931	0	.	13806232	13806826	0	1	594	0
chr19	13806254	13806835	MeWo_Garraway.29081	0	.	13806254	13806835	0	1	581	0
chr19	13806303	13806888	HeLa_polyA-_Chen.15644	0	.	13806303	13806888	0	1	585	0
chr19	13806323	13806829	MB435_Burge.34674	0	.	13806323	13806829	0	1	506	0
chr19	13806335	13806909	BT474_Burge_Thompson.27446	0	.	13806335	13806909	0	1	574	0
chr19	13806343	13806834	MDAMB231_Thompson.17680	0	.	13806343	13806834	0	1	491	0
chr19	13807336	13808083	HepG2_Caltech_ENCODE.29521	0	.	13807336	13808083	0	1	747	0
chr19	13807347	13808081	T47D_Burge_Thompson.23459	0	.	13807347	13808081	0	1	734	0
chr19	13807435	13808097	BT20_Thompson.17276	0	.	13807435	13808097	0	1	662	0
chr19	13807455	13808084	MeWo_Garraway.29082	0	.	13807455	13808084	0	1	629	0
chr19	13807534	13808042	H9_polyA+.35581	0	.	13807534	13808042	0	1	508	0
chr19	13807535	13808088	lymph_node_Burge.40443	0	.	13807535	13808088	0	1	553	0
chr19	13807539	13808066	ZR751_Thompson.19385	0	.	13807539	13808066	0	1	527	0
chr19	13807575	13808074	brain_AmbionMAQC.35244	0	.	13807575	13808074	0	1	499	0
chr19	13807608	13807947	NEC_from_H9.59716	0	.	13807608	13807947	0	1	339	0
chr19	13810428	13811360	HeLa_Bartel_WT_12hr.26508	0	.	13810428	13811360	0	1	932	0
chr19	13810522	13811439	HeLa_polyA-_Chen.15649	0	.	13810522	13811439	0	1	917	0
chr19	13810643	13811442	MIP101.54894	0	.	13810643	13811442	0	1	799	0
chr19	13810772	13811504	HepG2_Caltech_ENCODE.29523	0	.	13810772	13811504	0	1	732	0
chr19	13812123	13813554	K562.35566	0	.	13812123	13813554	0	1	1431	0
chr19	13812133	13812872	T47D_Burge_Thompson.23461	0	.	13812133	13812872	0	1	739	0
chr19	13812293	13813394	HeLa_Bartel_WT_12hr.26509	0	.	13812293	13813394	0	1	1101	0
chr19	13812324	13812627	MB435_Burge.34688	0	.	13812324	13812627	0	1	303	0
chr19	13812355	13812662	H1_rRNA-depleted_UCSD_REMC.68695	0	.	13812355	13812662	0	1	307	0
chr19	13812930	13814155	HeLa_polyA-_Chen.15651	0	.	13812930	13814155	0	1	1225	0
chr19	13813406	13814036	HepG2_Caltech_ENCODE.29525	0	.	13813406	13814036	0	1	630	0
chr19	13813526	13814538	HeLa_Bartel_WT_12hr.26510	0	.	13813526	13814538	0	1	1012	0
chr19	13813707	13814734	HME_Burge.33168	0	.	13813707	13814734	0	1	1027	0
chr19	13814098	13814566	MB435_Burge.34701	0	.	13814098	13814566	0	1	468	0
chr19	13814122	13814433	A549_Myers.67297	0	.	13814122	13814433	0	1	311	0
chr19	13814796	13815167	B_cells_Cheung.153196	0	.	13814796	13815167	0	1	371	0
chr19	13815235	13815799	B_cells_Cheung.153197	0	.	13815235	13815799	0	1	564	0
chr19	13815499	13816121	HeLa_polyA-_Chen.15652	0	.	13815499	13816121	0	1	622	0
chr19	13815665	13816174	REMC_LuminalBreast.79070	0	.	13815665	13816174	0	1	509	0
chr19	13815856	13816811	B_cells_Cheung.153198	0	.	13815856	13816811	0	1	955	0
chr19	13816441	13817231	REMC_BreastStem.40207	0	.	13816441	13817231	0	1	790	0
chr19	13817574	13828051	REMC_LuminalBreast.79072	0	.	13817574	13828051	0	1	10477	0
chr19	13817586	13826649	REMC_MyoepithelialBreast.73283	0	.	13817586	13826649	0	1	9063	0
chr19	13817609	13820490	B_Cells_Pritchard.2529779	0	+	13817609	13820490	0	2	392,1264	0,1617
chr19	13818179	13819168	B_Cells_Pritchard.2529781	0	+	13818179	13819168	0	1	989	0
chr19	13818184	13818949	REMC_BreastStem.40208	0	.	13818184	13818949	0	1	765	0
chr19	13818253	13819923	A549_Myers.67298	0	.	13818253	13819923	0	3	503,192,370	0,727,1300
chr19	13818700	13820314	B_cells_Cheung.153202	0	.	13818700	13820314	0	1	1614	0
chr19	13819064	13821108	REMC_BreastStem.40209	0	.	13819064	13821108	0	1	2044	0
chr19	13819119	13820309	CD4_Plagnol_activated.51923	0	.	13819119	13820309	0	1	1190	0
chr19	13819425	13819842	HeLa_polyA-_Chen.15645	0	.	13819425	13819842	0	1	417	0
chr19	13823359	13827937	REMC_BreastStem.40132	0	.	13823359	13827937	0	1	4578	0
chr19	13825195	13837251	B_Cells_Pritchard.2529817	0	-	13825195	13837251	0	4	82,935,567,280	0,10125,11137,11776
chr19	13826751	13828088	REMC_MyoepithelialBreast.73284	0	.	13826751	13828088	0	1	1337	0
chr19	13832260	13833655	REMC_MyoepithelialBreast.73287	0	.	13832260	13833655	0	1	1395	0
chr19	13832288	13834121	REMC_LuminalBreast.79076	0	.	13832288	13834121	0	1	1833	0
chr19	13832299	13834174	REMC_BreastStem.40135	0	.	13832299	13834174	0	1	1875	0
chr19	13832643	13833134	B_cells_Cheung.153204	0	.	13832643	13833134	0	1	491	0
chr19	13833241	13833548	A549_Myers.67301	0	.	13833241	13833548	0	1	307	0
chr19	13835300	13837251	B_Cells_Pritchard.2529815	0	+	13835300	13837251	0	1	1951	0
chr19	13835974	13836769	REMC_LuminalBreast.79078	0	.	13835974	13836769	0	1	795	0
chr19	13836025	13836792	REMC_MyoepithelialBreast.73289	0	.	13836025	13836792	0	1	767	0
chr19	13836191	13837123	A549_Myers.67303	0	.	13836191	13837123	0	1	932	0
chr19	13837414	13838814	B_Cells_Pritchard.2529857	0	+	13837414	13838814	0	1	1400	0
chr19	13837862	13839860	REMC_MyoepithelialBreast.73291	0	.	13837862	13839860	0	2	864,1071	0,927
chr19	13838952	13839861	REMC_LuminalBreast.79080	0	.	13838952	13839861	0	1	909	0
chr19	13839020	13839912	REMC_BreastStem.40138	0	.	13839020	13839912	0	1	892	0
chr19	13839125	13839860	B_Cells_Pritchard.2529861	0	+	13839125	13839860	0	1	735	0
chr19	13840479	13841026	brain_AmbionMAQC.35246	0	.	13840479	13841026	0	1	547	0
chr19	13840507	13841819	REMC_BreastStem.40139	0	.	13840507	13841819	0	1	1312	0
chr19	13840513	13840902	B_cells_Cheung.153215	0	.	13840513	13840902	0	1	389	0
chr19	13840515	13840987	REMC_LuminalBreast.79081	0	.	13840515	13840987	0	1	472	0
chr19	13840568	13841642	REMC_MyoepithelialBreast.73292	0	.	13840568	13841642	0	1	1074	0
chr19	13841146	13841772	brain_AmbionMAQC.35247	0	.	13841146	13841772	0	1	626	0
chr19	13841301	13841818	B_cells_Cheung.153217	0	.	13841301	13841818	0	1	517	0
chr19	13979676	13981385	REMC_BreastStem.40149	0	.	13979676	13981385	0	1	1709	0
chr19	13979714	13987854	B_Cells_Pritchard.2532399	0	-	13979714	13987854	0	2	417,326	0,7814
chr19	13980260	13981470	REMC_LuminalBreast.79103	0	.	13980260	13981470	0	1	1210	0
chr19	13989994	13990811	B_cells_Cheung.153269	0	.	13989994	13990811	0	1	817	0
chr19	14043516	14044206	ZR751_Thompson.19408	0	.	14043516	14044206	0	1	690	0
chr19	14112300	14115218	B_cells_Cheung.153405	0	.	14112300	14115218	0	1	2918	0
chr19	14237722	14238222	H1_polyA+.92176	0	.	14237722	14238222	0	1	500	0
chr19	14238528	14241799	H1_polyA+.92177	0	.	14238528	14241799	0	1	3271	0
chr19	14239156	14239764	B_cells_Cheung.153318	0	.	14239156	14239764	0	1	608	0
chr19	14243509	14246089	H1_polyA+.92179	0	.	14243509	14246089	0	1	2580	0
chr19	14248780	14252716	H1_polyA+.92181	0	.	14248780	14252716	0	1	3936	0
chr19	14250438	14250941	B_cells_Cheung.153326	0	.	14250438	14250941	0	1	503	0
chr19	14253049	14253515	H1_polyA+.92182	0	.	14253049	14253515	0	1	466	0
chr19	14275179	14276116	H1_polyA+.92190	0	.	14275179	14276116	0	1	937	0
chr19	14275514	14276173	B_cells_Cheung.153336	0	.	14275514	14276173	0	1	659	0
chr19	14276453	14297348	B_Cells_Pritchard.2530701	0	+	14276453	14297348	0	3	1225,501,246	0,15469,20649
chr19	14276629	14278263	H1_polyA+.92191	0	.	14276629	14278263	0	1	1634	0
chr19	14286118	14286968	B_Cells_Pritchard.2530753	0	+	14286118	14286968	0	1	850	0
chr19	14286126	14286840	B_cells_Cheung.153343	0	.	14286126	14286840	0	1	714	0
chr19	14286132	14286726	H1_polyA+.92193	0	.	14286132	14286726	0	1	594	0
chr19	14297473	14297851	B_cells_Cheung.153352	0	.	14297473	14297851	0	1	378	0
chr19	14305028	14305795	B_cells_Cheung.153357	0	.	14305028	14305795	0	1	767	0
chr19	14305059	14305602	BT474_Burge_Thompson.27504	0	.	14305059	14305602	0	1	543	0
chr19	14305078	14305816	ZR751_Thompson.19414	0	.	14305078	14305816	0	1	738	0
chr19	14305282	14305836	HeLa_polyA+_Chen.28891	0	.	14305282	14305836	0	1	554	0
chr19	14305403	14305741	B_Cells_Pritchard.2530829	0	+	14305403	14305741	0	1	338	0
chr19	14305425	14305755	A549_Myers.67367	0	.	14305425	14305755	0	1	330	0
chr19	14305553	14315723	Rinn_00026773	0	+	14305553	14315723	0	2	278,487	0,9683
chr19	14310822	14311282	B_cells_Cheung.153362	0	.	14310822	14311282	0	1	460	0
chr19	14316115	14317517	HeLa_polyA+_Chen.28897	0	.	14316115	14317517	0	1	1402	0
chr19	14316130	14317613	H1_polyA+.92199	0	.	14316130	14317613	0	1	1483	0
chr19	14316502	14317513	BT20_Thompson.17311	0	.	14316502	14317513	0	1	1011	0
chr19	14316503	14317727	B_Cells_Pritchard.2530883	0	.	14316503	14317727	0	1	1224	0
chr19	14317055	14317464	MB435_Burge.34763	0	.	14317055	14317464	0	1	409	0
chr19	14317976	14334732	B_Cells_Pritchard.2530885	0	-	14317976	14334732	0	2	168,1069	0,15687
chr19	14319649	14320494	B_cells_Cheung.153589	0	.	14319649	14320494	0	1	845	0
chr19	14321149	14321972	B_cells_Cheung.153590	0	.	14321149	14321972	0	1	823	0
chr19	14321352	14321783	B_Cells_Pritchard.2530905	0	+	14321352	14321783	0	1	431	0
chr19	14321367	14321953	BT474_Burge_Thompson.27507	0	.	14321367	14321953	0	1	586	0
chr19	14322200	14322759	B_cells_Cheung.153591	0	.	14322200	14322759	0	1	559	0
chr19	14326823	14327976	H1_polyA+.92204	0	.	14326823	14327976	0	1	1153	0
chr19	14326831	14327911	B_cells_Cheung.153595	0	.	14326831	14327911	0	1	1080	0
chr19	14328702	14331707	H1_polyA+.92206	0	.	14328702	14331707	0	1	3005	0
chr19	14331948	14334740	H1_polyA+.92207	0	.	14331948	14334740	0	1	2792	0
chr19	14333491	14334326	B_cells_Cheung.153602	0	.	14333491	14334326	0	1	835	0
chr19	14333698	14334125	prostate_carcinoma.78512	0	.	14333698	14334125	0	1	427	0
chr19	14333704	14334326	H9_polyA+.35618	0	.	14333704	14334326	0	1	622	0
chr19	14334361	14334741	BT474_Burge_Thompson.27509	0	.	14334361	14334741	0	1	380	0
chr19	14334985	14336256	B_cells_Cheung.153603	0	.	14334985	14336256	0	1	1271	0
chr19	14335008	14335981	B_Cells_Pritchard.2541675	0	+	14335008	14335981	0	1	973	0
chr19	14335029	14335857	H1_polyA+.92208	0	.	14335029	14335857	0	1	828	0
chr19	14335255	14335690	H9_polyA+.35619	0	.	14335255	14335690	0	1	435	0
chr19	14335339	14335796	ZR751_Thompson.19416	0	.	14335339	14335796	0	1	457	0
chr19	14335342	14335885	BT474_Burge_Thompson.27510	0	.	14335342	14335885	0	1	543	0
chr19	14335347	14335656	T47D_Burge_Thompson.23504	0	.	14335347	14335656	0	1	309	0
chr19	14341172	14341788	REMC_BreastStem.40168	0	.	14341172	14341788	0	1	616	0
chr19	14346698	14348133	B_cells_Cheung.153608	0	.	14346698	14348133	0	1	1435	0
chr19	14347137	14348006	CD4_Snyder.58730	0	.	14347137	14348006	0	1	869	0
chr19	14347151	14348261	B_Cells_Pritchard.2541717	0	+	14347151	14348261	0	1	1110	0
chr19	14347664	14348326	BT474_Burge_Thompson.27523	0	.	14347664	14348326	0	1	662	0
chr19	14349635	14350018	B_cells_Cheung.153609	0	.	14349635	14350018	0	1	383	0
chr19	14393010	14393954	REMC_LuminalBreast.79159	0	.	14393010	14393954	0	1	944	0
chr19	14399296	14399621	BT474_Burge_Thompson.27529	0	.	14399296	14399621	0	1	325	0
chr19	14469298	14469782	A549_Myers.67388	0	.	14469298	14469782	0	1	484	0
chr19	14475192	14475509	breast_Burge.33042	0	.	14475192	14475509	0	1	317	0
chr19	14482323	14482714	CD4_Snyder.58766	0	.	14482323	14482714	0	1	391	0
chr19	15063775	15064253	B_Cells_Pritchard.2532079	0	.	15063775	15064253	0	1	478	0
chr19	15072684	15073442	B_Cells_Pritchard.2532111	0	.	15072684	15073442	0	1	758	0
chr19	15075480	15077449	REMC_LuminalBreast.79214	0	.	15075480	15077449	0	1	1969	0
chr19	15099402	15099773	B_cells_Cheung.153569	0	.	15099402	15099773	0	1	371	0
chr19	15101417	15103488	REMC_LuminalBreast.79220	0	.	15101417	15103488	0	1	2071	0
chr19	15104922	15105933	REMC_LuminalBreast.79222	0	.	15104922	15105933	0	1	1011	0
chr19	15106435	15112787	REMC_LuminalBreast.79223	0	.	15106435	15112787	0	1	6352	0
chr19	15118969	15123341	REMC_LuminalBreast.79225	0	.	15118969	15123341	0	1	4372	0
chr19	15123533	15127800	REMC_LuminalBreast.79226	0	.	15123533	15127800	0	1	4267	0
chr19	15128076	15129700	MDAMB468_Thompson.19362	0	-	15128076	15129700	0	2	591,34	0,1590
chr19	15174386	15175177	REMC_MyoepithelialBreast.73326	0	.	15174386	15175177	0	1	791	0
chr19	15180945	15186511	REMC_LuminalBreast.79574	0	.	15180945	15186511	0	1	5566	0
chr19	15184352	15184993	REMC_MyoepithelialBreast.73330	0	.	15184352	15184993	0	1	641	0
chr19	15185434	15186469	REMC_MyoepithelialBreast.73331	0	.	15185434	15186469	0	1	1035	0
chr19	15185461	15196803	MIP101.55145	0	-	15185461	15196803	0	2	884,59	0,11283
chr19	15185730	15186518	H1_polyA+.92329	0	.	15185730	15186518	0	1	788	0
chr19	15186672	15197008	REMC_LuminalBreast.79575	0	.	15186672	15197008	0	1	10336	0
chr19	15188880	15189823	REMC_MyoepithelialBreast.73334	0	.	15188880	15189823	0	1	943	0
chr19	15189941	15191098	REMC_MyoepithelialBreast.73335	0	.	15189941	15191098	0	1	1157	0
chr19	15189942	15190861	H1_polyA+.92331	0	.	15189942	15190861	0	1	919	0
chr19	15192249	15192596	B_Cells_Pritchard.2532359	0	.	15192249	15192596	0	1	347	0
chr19	15193900	15195530	REMC_MyoepithelialBreast.73338	0	.	15193900	15195530	0	1	1630	0
chr19	15195259	15195701	A549_Myers.67431	0	.	15195259	15195701	0	1	442	0
chr19	15195304	15196327	H1_polyA+.92334	0	.	15195304	15196327	0	1	1023	0
chr19	15304402	15305056	brain_AmbionMAQC.35356	0	.	15304402	15305056	0	1	654	0
chr19	15304404	15304777	H1_rRNA-depleted_UCSD_REMC.68893	0	.	15304404	15304777	0	1	373	0
chr19	15304414	15312874	H1_polyA+.92380	0	+	15304414	15312874	0	2	45,4572	0,3888
chr19	15304414	15305416	H1_polyA+.92381	0	.	15304414	15305416	0	1	1002	0
chr19	15304430	15304873	CD4_Snyder.58824	0	.	15304430	15304873	0	1	443	0
chr19	15304455	15304849	MB435_Burge.34867	0	.	15304455	15304849	0	1	394	0
chr19	15304570	15304886	BT474_Burge_Thompson.28672	0	.	15304570	15304886	0	1	316	0
chr19	15307016	15312874	H1_polyA+.92382	0	.	15307016	15312874	0	1	5858	0
chr19	15308659	15312897	B_cells_Cheung.153584	0	.	15308659	15312897	0	1	4238	0
chr19	15308786	15310505	melanoma_Garraway_short_term_cultures.54195	0	.	15308786	15310505	0	1	1719	0
chr19	15311226	15311790	CD4_Plagnol_resting.50619	0	.	15311226	15311790	0	1	564	0
chr19	15311230	15312881	CD4_Plagnol_activated.53262	0	.	15311230	15312881	0	1	1651	0
chr19	15311948	15312819	melanoma_Garraway_short_term_cultures.54197	0	.	15311948	15312819	0	1	871	0
chr19	15312981	15313919	B_cells_Cheung.153585	0	.	15312981	15313919	0	1	938	0
chr19	15313053	15318738	REMC_BreastStem.40488	0	.	15313053	15318738	0	1	5685	0
chr19	15315106	15316530	CD4_Plagnol_activated.53266	0	.	15315106	15316530	0	1	1424	0
chr19	15316127	15316553	HeLa_polyA+_Chen.28948	0	.	15316127	15316553	0	1	426	0
chr19	15316163	15316508	melanoma_Garraway_short_term_cultures.54200	0	.	15316163	15316508	0	1	345	0
chr19	15316660	15318483	CD4_Plagnol_activated.53267	0	.	15316660	15318483	0	1	1823	0
chr19	15934498	15934893	B_Cells_Pritchard.2534093	0	.	15934498	15934893	0	1	395	0
chr19	15951614	15985678	pHIT000119386	0	-	15951614	15985678	0	8	178,86,163,122,128,54,85,30	0,10156,12309,13287,17498,17723,19087,34034
chr19	16076484	16079774	REMC_LuminalBreast.79277	0	.	16076484	16079774	0	1	3290	0
chr19	16079988	16082178	REMC_LuminalBreast.79278	0	.	16079988	16082178	0	1	2190	0
chr19	16080073	16081002	B_cells_Cheung.153788	0	.	16080073	16081002	0	1	929	0
chr19	16165161	16166032	REMC_LuminalBreast.79289	0	.	16165161	16166032	0	1	871	0
chr19	16209302	16210703	REMC_BreastStem.40253	0	.	16209302	16210703	0	1	1401	0
chr19	16210892	16212483	B_cells_Cheung.153733	0	.	16210892	16212483	0	1	1591	0
chr19	16210962	16212251	brain_AmbionMAQC.35461	0	.	16210962	16212251	0	1	1289	0
chr19	16210968	16211318	CD4_Plagnol_resting.50771	0	.	16210968	16211318	0	1	350	0
chr19	16211120	16212932	REMC_MyoepithelialBreast.73380	0	.	16211120	16212932	0	1	1812	0
chr19	16211413	16212305	CD4_Plagnol_activated.52112	0	.	16211413	16212305	0	1	892	0
chr19	16211769	16213637	CD4_Plagnol_resting.50773	0	.	16211769	16213637	0	1	1868	0
chr19	16212193	16212846	REMC_LuminalBreast.79294	0	.	16212193	16212846	0	1	653	0
chr19	16213736	16214526	REMC_MyoepithelialBreast.73382	0	.	16213736	16214526	0	1	790	0
chr19	16213788	16214533	B_cells_Cheung.153735	0	.	16213788	16214533	0	1	745	0
chr19	16213797	16214506	CD4_Plagnol_resting.50774	0	.	16213797	16214506	0	1	709	0
chr19	16214143	16214647	REMC_LuminalBreast.79296	0	.	16214143	16214647	0	1	504	0
chr19	16214152	16214583	CD4_Plagnol_activated.52114	0	.	16214152	16214583	0	1	431	0
chr19	16224492	16225347	B_Cells_Pritchard.2534785	0	.	16224492	16225347	0	1	855	0
chr19	16263561	16271547	B_Cells_Pritchard.2534891	0	+	16263561	16271547	0	2	630,209	0,7777
chr19	16264813	16265363	REMC_BreastStem.40258	0	.	16264813	16265363	0	1	550	0
chr19	16278466	16279239	prostate_carcinoma.78792	0	.	16278466	16279239	0	1	773	0
chr19	16278676	16279168	ZR751_Thompson.19486	0	.	16278676	16279168	0	1	492	0
chr19	16278748	16279201	B_Cells_Pritchard.2534933	0	+	16278748	16279201	0	1	453	0
chr19	16285237	16286623	REMC_LuminalBreast.79298	0	.	16285237	16286623	0	1	1386	0
chr19	16301652	16302903	CD4_Plagnol_resting.51013	0	.	16301652	16302903	0	1	1251	0
chr19	16301708	16302678	CD4_Plagnol_activated.52129	0	.	16301708	16302678	0	1	970	0
chr19	16302104	16302882	melanoma_Garraway_short_term_cultures.54259	0	.	16302104	16302882	0	1	778	0
chr19	16303743	16304288	melanoma_Garraway_short_term_cultures.54261	0	.	16303743	16304288	0	1	545	0
chr19	16303746	16304288	CD4_Plagnol_activated.52132	0	.	16303746	16304288	0	1	542	0
chr19	16303752	16304286	B_Cells_Pritchard.2535019	0	-	16303752	16304286	0	1	534	0
chr19	16303761	16304297	CD4_Snyder.58930	0	.	16303761	16304297	0	1	536	0
chr19	16306828	16315781	REMC_BreastStem.40261	0	.	16306828	16315781	0	1	8953	0
chr19	16308127	16311621	REMC_LuminalBreast.79305	0	.	16308127	16311621	0	1	3494	0
chr19	16308132	16311490	REMC_MyoepithelialBreast.73386	0	.	16308132	16311490	0	1	3358	0
chr19	16309297	16309884	B_Cells_Pritchard.2535033	0	-	16309297	16309884	0	1	587	0
chr19	16313588	16314790	REMC_MyoepithelialBreast.73388	0	.	16313588	16314790	0	1	1202	0
chr19	16318337	16318675	B_Cells_Pritchard.2535061	0	-	16318337	16318675	0	1	338	0
chr19	16319444	16320232	HepG2_Caltech_ENCODE.29646	0	.	16319444	16320232	0	1	788	0
chr19	16319511	16321055	REMC_BreastStem.40265	0	.	16319511	16321055	0	1	1544	0
chr19	16319518	16321009	REMC_LuminalBreast.79310	0	.	16319518	16321009	0	1	1491	0
chr19	16319518	16320929	REMC_MyoepithelialBreast.73390	0	.	16319518	16320929	0	1	1411	0
chr19	16319599	16320466	H1_polyA+.92433	0	.	16319599	16320466	0	1	867	0
chr19	16322850	16323564	REMC_LuminalBreast.79312	0	.	16322850	16323564	0	1	714	0
chr19	16323427	16323848	CD4_Plagnol_resting.50782	0	.	16323427	16323848	0	1	421	0
chr19	16323446	16323983	B_cells_Cheung.153753	0	.	16323446	16323983	0	1	537	0
chr19	16324078	16324400	B_cells_Cheung.153754	0	.	16324078	16324400	0	1	322	0
chr19	16601045	16601568	MDAMB468_Thompson.19358	0	.	16601045	16601568	0	1	523	0
chr19	16601068	16601602	HeLa_polyA+_Chen.29010	0	.	16601068	16601602	0	1	534	0
chr19	16601100	16601413	ZR751_Thompson.19502	0	.	16601100	16601413	0	1	313	0
chr19	16678548	16678941	B_cells_Cheung.153828	0	.	16678548	16678941	0	1	393	0
chr19	16683480	16684199	H1_polyA+.92504	0	.	16683480	16684199	0	1	719	0
chr19	16853358	16854051	brain_AmbionMAQC.35509	0	.	16853358	16854051	0	1	693	0
chr19	16854848	16855307	B_cells_Cheung.153858	0	.	16854848	16855307	0	1	459	0
chr19	17194623	17195773	REMC_BreastStem.40445	0	.	17194623	17195773	0	1	1150	0
chr19	17261914	17262524	B_cells_Cheung.154012	0	.	17261914	17262524	0	1	610	0
chr19	17319142	17319507	BT474_Burge_Thompson.27728	0	.	17319142	17319507	0	1	365	0
chr19	17359052	17359417	prostate_carcinoma.80613	0	.	17359052	17359417	0	1	365	0
chr19	17360135	17361603	H1_polyA+.92582	0	.	17360135	17361603	0	1	1468	0
chr19	17361713	17362487	H1_polyA+.92583	0	.	17361713	17362487	0	1	774	0
chr19	17361795	17362460	prostate_carcinoma.80615	0	.	17361795	17362460	0	1	665	0
chr19	17361880	17362526	BT20_Thompson.17442	0	.	17361880	17362526	0	1	646	0
chr19	17425035	17425683	prostate_carcinoma.78875	0	.	17425035	17425683	0	1	648	0
chr19	17671510	17671843	B_Cells_Pritchard.2537619	0	.	17671510	17671843	0	1	333	0
chr19	17709079	17710667	B_cells_Cheung.154052	0	.	17709079	17710667	0	1	1588	0
chr19	17709082	17709853	CD4_Plagnol_resting.51080	0	.	17709082	17709853	0	1	771	0
chr19	17710748	17712302	B_cells_Cheung.154053	0	.	17710748	17712302	0	1	1554	0
chr19	17710897	17711831	CD4_Plagnol_activated.52422	0	.	17710897	17711831	0	1	934	0
chr19	17710948	17711835	CD4_Plagnol_resting.51081	0	.	17710948	17711835	0	1	887	0
chr19	17712400	17714721	B_cells_Cheung.154054	0	.	17712400	17714721	0	1	2321	0
chr19	17712433	17714701	B_Cells_Pritchard.2537733	0	+	17712433	17714701	0	1	2268	0
chr19	17762459	17763392	REMC_LuminalBreast.79487	0	.	17762459	17763392	0	1	933	0
chr19	17822517	17822996	B_cells_Cheung.154139	0	.	17822517	17822996	0	1	479	0
chr19	17823231	17823826	B_cells_Cheung.154140	0	.	17823231	17823826	0	1	595	0
chr19	17836674	17838178	H9_polyA-_Chen.11614	0	.	17836674	17838178	0	1	1504	0
chr19	17836807	17837865	HeLa_polyA-_Chen.15806	0	.	17836807	17837865	0	1	1058	0
chr19	17836826	17838553	B_cells_Cheung.154105	0	.	17836826	17838553	0	1	1727	0
chr19	17836962	17837846	CD4_Plagnol_activated.52448	0	.	17836962	17837846	0	1	884	0
chr19	17837082	17838226	melanoma_Garraway_short_term_cultures.54553	0	.	17837082	17838226	0	1	1144	0
chr19	17837096	17837894	brain_AmbionMAQC.35624	0	.	17837096	17837894	0	1	798	0
chr19	17837673	17838272	CD4_Plagnol_resting.51028	0	.	17837673	17838272	0	1	599	0
chr19	17840296	17841321	brain_AmbionMAQC.35625	0	.	17840296	17841321	0	1	1025	0
chr19	17841866	17842515	CD4_Plagnol_activated.52451	0	.	17841866	17842515	0	1	649	0
chr19	17841893	17842521	CD4_Plagnol_resting.51029	0	.	17841893	17842521	0	1	628	0
chr19	17841947	17842286	B_cells_Cheung.154108	0	.	17841947	17842286	0	1	339	0
chr19	17898303	17898623	B_cells_Cheung.154126	0	.	17898303	17898623	0	1	320	0
chr19	17917550	17918537	REMC_BreastStem.40366	0	.	17917550	17918537	0	1	987	0
chr19	17917564	17918431	CD4_Plagnol_activated.52460	0	.	17917564	17918431	0	1	867	0
chr19	17918716	17919764	B_cells_Cheung.154142	0	.	17918716	17919764	0	1	1048	0
chr19	17918729	17919915	B_Cells_Pritchard.2538093	0	+	17918729	17919915	0	1	1186	0
chr19	17919264	17920397	A549_Myers.67741	0	.	17919264	17920397	0	1	1133	0
chr19	17919969	17921382	B_cells_Cheung.154143	0	.	17919969	17921382	0	1	1413	0
chr19	17920123	17921387	B_Cells_Pritchard.2538097	0	+	17920123	17921387	0	1	1264	0
chr19	17987009	17987698	B_cells_Cheung.154187	0	.	17987009	17987698	0	1	689	0
chr19	17987787	17988255	B_Cells_Pritchard.2538179	0	+	17987787	17988255	0	1	468	0
chr19	17988925	17989788	CD4_Plagnol_activated.52468	0	.	17988925	17989788	0	1	863	0
chr19	17992329	17993926	B_Cells_Pritchard.2538199	0	+	17992329	17993926	0	1	1597	0
chr19	17995006	17996670	H1_polyA+.92689	0	.	17995006	17996670	0	1	1664	0
chr19	17995105	17996671	B_cells_Cheung.154190	0	.	17995105	17996671	0	1	1566	0
chr19	17995560	17996195	brain_AmbionMAQC.35634	0	.	17995560	17996195	0	1	635	0
chr19	17995633	17996657	REMC_LuminalBreast.79526	0	.	17995633	17996657	0	1	1024	0
chr19	17998061	17998485	H1_polyA+.92690	0	.	17998061	17998485	0	1	424	0
chr19	17998126	17998491	HeLa_polyA+_Chen.29147	0	.	17998126	17998491	0	1	365	0
chr19	17998167	17998616	B_cells_Cheung.154193	0	.	17998167	17998616	0	1	449	0
chr19	18000019	18002200	B_cells_Cheung.154195	0	.	18000019	18002200	0	1	2181	0
chr19	18000969	18001698	REMC_LuminalBreast.79527	0	.	18000969	18001698	0	1	729	0
chr19	18012285	18012621	pHIT000032739	0	+	18012285	18012621	0	1	336	0
chr19	18016425	18017676	REMC_MyoepithelialBreast.73561	0	.	18016425	18017676	0	1	1251	0
chr19	18021253	18023275	REMC_BreastStem.40373	0	.	18021253	18023275	0	1	2022	0
chr19	18022838	18023221	REMC_MyoepithelialBreast.73563	0	.	18022838	18023221	0	1	383	0
chr19	18029344	18029724	CD4_Plagnol_activated.52475	0	.	18029344	18029724	0	1	380	0
chr19	18029355	18029718	CD4_Plagnol_resting.51126	0	.	18029355	18029718	0	1	363	0
chr19	18158344	18159307	REMC_BreastStem.40382	0	.	18158344	18159307	0	1	963	0
chr19	18158492	18159295	REMC_MyoepithelialBreast.73577	0	.	18158492	18159295	0	1	803	0
chr19	18161561	18161907	B_cells_Cheung.154556	0	.	18161561	18161907	0	1	346	0
chr19	18247405	18247718	ovary_Raymond.198179	0	.	18247405	18247718	0	1	313	0
chr19	18249145	18249543	H1_polyA+.92725	0	.	18249145	18249543	0	1	398	0
chr19	18249725	18250239	BT474_Burge_Thompson.27802	0	.	18249725	18250239	0	1	514	0
chr19	18249772	18250405	CD4_Plagnol_resting.51165	0	.	18249772	18250405	0	1	633	0
chr19	18249781	18250276	melanoma_Garraway_short_term_cultures.54604	0	.	18249781	18250276	0	1	495	0
chr19	18249785	18250253	CD4_Snyder.59285	0	.	18249785	18250253	0	1	468	0
chr19	18249808	18250242	breast_Burge.33696	0	.	18249808	18250242	0	1	434	0
chr19	18249817	18250245	HepG2_Caltech_ENCODE.29805	0	.	18249817	18250245	0	1	428	0
chr19	18249848	18250354	HeLa_polyA+_Chen.29159	0	.	18249848	18250354	0	1	506	0
chr19	18256368	18256961	B_cells_Cheung.154230	0	.	18256368	18256961	0	1	593	0
chr19	18256373	18256863	H1_polyA+.92730	0	.	18256373	18256863	0	1	490	0
chr19	18256374	18256843	HeLa_polyA+_Chen.29162	0	.	18256374	18256843	0	1	469	0
chr19	18258601	18260567	B_cells_Cheung.154234	0	.	18258601	18260567	0	1	1966	0
chr19	18259074	18260561	REMC_LuminalBreast.79595	0	.	18259074	18260561	0	1	1487	0
chr19	18259538	18260478	melanoma_Garraway_short_term_cultures.54609	0	.	18259538	18260478	0	1	940	0
chr19	18261626	18262722	B_cells_Cheung.154237	0	.	18261626	18262722	0	1	1096	0
chr19	18261644	18262299	K562.35885	0	.	18261644	18262299	0	1	655	0
chr19	18261667	18263125	REMC_LuminalBreast.79596	0	.	18261667	18263125	0	1	1458	0
chr19	18261673	18262716	B_Cells_Pritchard.2538869	0	-	18261673	18262716	0	1	1043	0
chr19	18261743	18262695	CD4_Snyder.59288	0	.	18261743	18262695	0	1	952	0
chr19	18262085	18262419	A549_Myers.67851	0	.	18262085	18262419	0	1	334	0
chr19	18262817	18268380	B_cells_Cheung.154238	0	.	18262817	18268380	0	1	5563	0
chr19	18262837	18265690	B_Cells_Pritchard.2538873	0	.	18262837	18265690	0	1	2853	0
chr19	18262907	18263391	K562.35886	0	.	18262907	18263391	0	1	484	0
chr19	18262965	18263851	CD4_Plagnol_resting.51182	0	.	18262965	18263851	0	1	886	0
chr19	18262978	18263292	A549_Myers.67852	0	.	18262978	18263292	0	1	314	0
chr19	18263310	18264030	prostate_normal.47117	0	.	18263310	18264030	0	1	720	0
chr19	18263345	18263691	A549_Myers.67853	0	.	18263345	18263691	0	1	346	0
chr19	18263628	18264651	K562.35887	0	.	18263628	18264651	0	1	1023	0
chr19	18263872	18264627	CD4_Plagnol_activated.52518	0	.	18263872	18264627	0	1	755	0
chr19	18264542	18265006	HeLa_polyA-_Chen.15825	0	.	18264542	18265006	0	1	464	0
chr19	18265819	18267335	H1_polyA+.92722	0	.	18265819	18267335	0	1	1516	0
chr19	18265847	18266447	CD4_Snyder.59289	0	.	18265847	18266447	0	1	600	0
chr19	18265849	18268373	B_Cells_Pritchard.2538987	0	+	18265849	18268373	0	1	2524	0
chr19	18265849	18266892	B_Cells_Pritchard.2538989	0	-	18265849	18266892	0	1	1043	0
chr19	18266101	18266688	A549_Myers.67856	0	.	18266101	18266688	0	1	587	0
chr19	18266544	18267290	K562.35902	0	.	18266544	18267290	0	1	746	0
chr19	18266599	18267370	brain_AmbionMAQC.35705	0	.	18266599	18267370	0	1	771	0
chr19	18266760	18267281	prostate_normal.47120	0	.	18266760	18267281	0	1	521	0
chr19	18267457	18268122	HeLa_polyA+_Chen.29166	0	.	18267457	18268122	0	1	665	0
chr19	18267597	18268190	H1_polyA+.92723	0	.	18267597	18268190	0	1	593	0
chr19	18270230	18270727	B_cells_Cheung.154242	0	.	18270230	18270727	0	1	497	0
chr19	18274357	18274908	B_Cells_Pritchard.2539005	0	+	18274357	18274908	0	1	551	0
chr19	18274581	18274888	B_cells_Cheung.154245	0	.	18274581	18274888	0	1	307	0
chr19	18275196	18275712	CD4_Snyder.59291	0	.	18275196	18275712	0	1	516	0
chr19	18275201	18275537	A549_Myers.67858	0	.	18275201	18275537	0	1	336	0
chr19	18275419	18277644	CD4_Plagnol_resting.51183	0	.	18275419	18277644	0	1	2225	0
chr19	18275453	18277552	CD4_Plagnol_activated.52519	0	.	18275453	18277552	0	1	2099	0
chr19	18275756	18276244	HepG2_Caltech_ENCODE.29810	0	.	18275756	18276244	0	1	488	0
chr19	18300508	18301548	H1_polyA+.92734	0	.	18300508	18301548	0	1	1040	0
chr19	18303392	18303708	prostate_carcinoma.79053	0	.	18303392	18303708	0	1	316	0
chr19	18303393	18303842	B_cells_Cheung.154254	0	.	18303393	18303842	0	1	449	0
chr19	18306955	18307617	B_cells_Cheung.154258	0	.	18306955	18307617	0	1	662	0
chr19	18307028	18307647	H1_polyA+.92739	0	.	18307028	18307647	0	1	619	0
chr19	18307037	18307582	prostate_carcinoma.79055	0	.	18307037	18307582	0	1	545	0
chr19	18553725	18554741	REMC_MyoepithelialBreast.73637	0	.	18553725	18554741	0	1	1016	0
chr19	18554444	18555621	REMC_LuminalBreast.79637	0	.	18554444	18555621	0	1	1177	0
chr19	18555745	18556632	REMC_LuminalBreast.79638	0	.	18555745	18556632	0	1	887	0
chr19	18555784	18556633	REMC_MyoepithelialBreast.73638	0	.	18555784	18556633	0	1	849	0
chr19	18601159	18601719	B_cells_Cheung.154343	0	.	18601159	18601719	0	1	560	0
chr19	18644390	18644885	B_cells_Cheung.154349	0	.	18644390	18644885	0	1	495	0
chr19	18646402	18646957	B_cells_Cheung.154350	0	.	18646402	18646957	0	1	555	0
chr19	18646403	18647589	REMC_LuminalBreast.79641	0	.	18646403	18647589	0	1	1186	0
chr19	18646410	18646943	B_Cells_Pritchard.2539601	0	+	18646410	18646943	0	1	533	0
chr19	18647352	18647852	B_cells_Cheung.154351	0	.	18647352	18647852	0	1	500	0
chr19	18647544	18647943	B_Cells_Pritchard.2539609	0	+	18647544	18647943	0	1	399	0
chr19	18647612	18649368	REMC_MyoepithelialBreast.73659	0	.	18647612	18649368	0	1	1756	0
chr19	18653465	18654298	REMC_MyoepithelialBreast.73660	0	.	18653465	18654298	0	1	833	0
chr19	18770678	18772305	prostate_carcinoma.79151	0	+	18770678	18772305	0	4	655,51,122,184	0,715,969,1443
chr19	18775451	18776145	prostate_carcinoma.79104	0	.	18775451	18776145	0	1	694	0
chr19	18916496	18918682	REMC_LuminalBreast.79719	0	.	18916496	18918682	0	1	2186	0
chr19	18917026	18917719	REMC_MyoepithelialBreast.73713	0	.	18917026	18917719	0	1	693	0
chr19	18917124	18921068	NEC_from_H9.60469	0	-	18917124	18921068	0	2	268,206	0,3738
chr19	18919607	18921222	REMC_MyoepithelialBreast.73714	0	.	18919607	18921222	0	1	1615	0
chr19	18919731	18921958	H1_polyA+.92888	0	.	18919731	18921958	0	1	2227	0
chr19	18919854	18920570	NEC_from_H9.60473	0	.	18919854	18920570	0	1	716	0
chr19	18919930	18920777	B_Cells_Pritchard.2540213	0	.	18919930	18920777	0	1	847	0
chr19	18920544	18921207	prostate_carcinoma.79153	0	.	18920544	18921207	0	1	663	0
chr19	18922987	18923571	REMC_LuminalBreast.79720	0	.	18922987	18923571	0	1	584	0
chr19	18925366	18926372	REMC_LuminalBreast.79721	0	.	18925366	18926372	0	1	1006	0
chr19	18925464	18926427	REMC_MyoepithelialBreast.73716	0	.	18925464	18926427	0	1	963	0
chr19	18926789	18927875	REMC_MyoepithelialBreast.73717	0	.	18926789	18927875	0	1	1086	0
chr19	18927057	18927552	B_Cells_Pritchard.2540241	0	.	18927057	18927552	0	1	495	0
chr19	19032656	19034382	H1_polyA+.93039	0	.	19032656	19034382	0	1	1726	0
chr19	19032693	19033398	REMC_LuminalBreast.79754	0	.	19032693	19033398	0	1	705	0
chr19	19032745	19034151	MIP101.55474	0	.	19032745	19034151	0	1	1406	0
chr19	19033317	19034765	B_cells_Cheung.154466	0	.	19033317	19034765	0	1	1448	0
chr19	19175672	19180564	B_Cells_Pritchard.2540775	0	+	19175672	19180564	0	2	240,1139	0,3753
chr19	19332740	19333455	B_cells_Cheung.154502	0	.	19332740	19333455	0	1	715	0
chr19	19335781	19336196	B_Cells_Pritchard.2541125	0	-	19335781	19336196	0	1	415	0
chr19	19344157	19344799	melanoma_Garraway_short_term_cultures.54775	0	.	19344157	19344799	0	1	642	0
chr19	19482241	19483106	melanoma_Garraway_short_term_cultures.54791	0	.	19482241	19483106	0	1	865	0
chr19	19482254	19483020	CD4_Plagnol_activated.52800	0	.	19482254	19483020	0	1	766	0
chr19	19519903	19521190	melanoma_Garraway_short_term_cultures.54797	0	.	19519903	19521190	0	1	1287	0
chr19	19519918	19521147	REMC_MyoepithelialBreast.73766	0	.	19519918	19521147	0	1	1229	0
chr19	19521259	19522634	REMC_BreastStem.40675	0	.	19521259	19522634	0	1	1375	0
chr19	19521274	19522271	REMC_MyoepithelialBreast.73767	0	.	19521274	19522271	0	1	997	0
chr19	19525341	19527455	REMC_LuminalBreast.79767	0	.	19525341	19527455	0	1	2114	0
chr19	19526452	19527047	melanoma_Garraway_short_term_cultures.54798	0	.	19526452	19527047	0	1	595	0
chr19	19526460	19527090	REMC_BreastStem.40676	0	.	19526460	19527090	0	1	630	0
chr19	19530018	19531076	CD4_Plagnol_activated.52805	0	.	19530018	19531076	0	1	1058	0
chr19	19530487	19530863	A549_Myers.68004	0	.	19530487	19530863	0	1	376	0
chr19	19591517	19592123	prostate_carcinoma.80515	0	.	19591517	19592123	0	1	606	0
chr19	19591674	19593891	B_cells_Cheung.154583	0	.	19591674	19593891	0	1	2217	0
chr19	19591721	19593518	CD4_Plagnol_resting.52065	0	.	19591721	19593518	0	1	1797	0
chr19	32423826	32430455	B_Cells_Pritchard.2552393	0	-	32423826	32430455	0	5	283,213,210,49,152	0,610,3209,4730,6477
chr19	32821229	32829224	Rinn_00026812	0	-	32821229	32829224	0	2	197,132	0,7863
chr19	32881012	32881752	K562.36294	0	.	32881012	32881752	0	1	740	0
chr19	32882246	32883212	K562.36295	0	.	32882246	32883212	0	1	966	0
chr19	32889789	32890142	MDAMB468_Thompson.19926	0	.	32889789	32890142	0	1	353	0
chr19	32893960	32894681	BT20_Thompson.17922	0	.	32893960	32894681	0	1	721	0
chr19	32896799	32897736	REMC_MyoepithelialBreast.74319	0	.	32896799	32897736	0	1	937	0
chr19	32904378	32970702	REMC_MyoepithelialBreast.74476	0	.	32904378	32970702	0	1	66324	0
chr19	32916551	32918563	H1_polyA+.93650	0	.	32916551	32918563	0	1	2012	0
chr19	32916715	32917696	MCF10A_Thompson.17543	0	.	32916715	32917696	0	1	981	0
chr19	32924726	32925635	MIP101.55876	0	.	32924726	32925635	0	1	909	0
chr19	32928578	32979192	H1_polyA+.93653	0	-	32928578	32979192	0	2	510,3445	0,47169
chr19	32928771	32977027	H9_polyA+.36572	0	-	32928771	32977027	0	3	317,233,748	0,46976,47508
chr19	32928843	32979197	HeLa_polyA+_Chen.29436	0	-	32928843	32979197	0	2	245,3450	0,46904
chr19	32930931	32931954	REMC_LuminalBreast.80330	0	.	32930931	32931954	0	1	1023	0
chr19	32931073	32931900	MCF10A_Thompson.17547	0	.	32931073	32931900	0	1	827	0
chr19	32932562	32938448	MCF10A_Thompson.17548	0	.	32932562	32938448	0	1	5886	0
chr19	32937180	32938634	B_cells_Cheung.156086	0	.	32937180	32938634	0	1	1454	0
chr19	32937405	32938432	B_Cells_Pritchard.2552861	0	.	32937405	32938432	0	1	1027	0
chr19	32937461	32938221	melanoma_Garraway_short_term_cultures.55114	0	.	32937461	32938221	0	1	760	0
chr19	32937697	32938178	H1_polyA+.93656	0	.	32937697	32938178	0	1	481	0
chr19	32937865	32938609	REMC_LuminalBreast.80331	0	.	32937865	32938609	0	1	744	0
chr19	32940037	32958072	HepG2_Caltech_ENCODE.30122	0	.	32940037	32958072	0	1	18035	0
chr19	32940050	32964289	B_Cells_Pritchard.2555283	0	-	32940050	32964289	0	6	3249,5473,4086,1619,1429,1165	0,9492,15137,19223,21053,23074
chr19	32940050	32966674	B_Cells_Pritchard.2555281	0	+	32940050	32966674	0	2	25622,231	0,26393
chr19	32940076	32960964	melanoma_Garraway_short_term_cultures.55116	0	.	32940076	32960964	0	1	20888	0
chr19	32940088	32962620	REMC_LuminalBreast.80327	0	.	32940088	32962620	0	1	22532	0
chr19	32946952	32965648	B_cells_Cheung.156092	0	.	32946952	32965648	0	1	18696	0
chr19	32948900	32952577	HeLa_polyA+_Chen.29442	0	.	32948900	32952577	0	1	3677	0
chr19	32949578	32953452	H9_polyA+.36584	0	+	32949578	32953452	0	2	613,1706	0,2168
chr19	32949678	32952588	H1_polyA+.93660	0	.	32949678	32952588	0	1	2910	0
chr19	32950429	32954757	MeI_Garraway.14473	0	.	32950429	32954757	0	1	4328	0
chr19	32950962	32952259	MDAMB468_Thompson.19938	0	.	32950962	32952259	0	1	1297	0
chr19	32951110	32966975	MCF10A_Thompson.17550	0	+	32951110	32966975	0	4	8433,133,111,3751	0,8902,10298,12114
chr19	32951787	32953360	BT474_Burge_Thompson.28180	0	.	32951787	32953360	0	1	1573	0
chr19	32951826	32952281	HeLa_polyA-_Chen.15932	0	.	32951826	32952281	0	1	455	0
chr19	32951897	32959908	CD4_Plagnol_resting.51745	0	.	32951897	32959908	0	1	8011	0
chr19	32951902	32960426	CD4_Plagnol_activated.53152	0	.	32951902	32960426	0	1	8524	0
chr19	32952683	32954723	HeLa_polyA+_Chen.29443	0	.	32952683	32954723	0	1	2040	0
chr19	32953261	32965018	H1_polyA+.93662	0	.	32953261	32965018	0	1	11757	0
chr19	32953630	32957614	H9_polyA+.36585	0	+	32953630	32957614	0	2	1094,587	0,3397
chr19	32953817	32954724	MDAMB468_Thompson.19939	0	.	32953817	32954724	0	1	907	0
chr19	32954076	32954719	brain_AmbionMAQC.36090	0	.	32954076	32954719	0	1	643	0
chr19	32954181	32954725	liver_polyA+.107490	0	.	32954181	32954725	0	1	544	0
chr19	32954228	32954970	BT474_Burge_Thompson.28181	0	.	32954228	32954970	0	1	742	0
chr19	32958380	32958696	H1_rRNA-depleted_UCSD_REMC.70011	0	.	32958380	32958696	0	1	316	0
chr19	32959479	32960084	kidney_Gilad.69337	0	.	32959479	32960084	0	1	605	0
chr19	32959479	32960457	liver_polyA+.107495	0	.	32959479	32960457	0	1	978	0
chr19	32960014	32960892	CD4_Plagnol_resting.51746	0	.	32960014	32960892	0	1	878	0
chr19	32961081	32964578	CD4_Plagnol_activated.53153	0	.	32961081	32964578	0	1	3497	0
chr19	32961094	32965648	melanoma_Garraway_short_term_cultures.55117	0	.	32961094	32965648	0	1	4554	0
chr19	32961209	32965650	MDAMB468_Thompson.19942	0	.	32961209	32965650	0	1	4441	0
chr19	32961358	32961866	MeI_Garraway.14477	0	.	32961358	32961866	0	1	508	0
chr19	32962768	32964043	REMC_LuminalBreast.80333	0	.	32962768	32964043	0	1	1275	0
chr19	32963193	32964385	H9_polyA+.36590	0	.	32963193	32964385	0	1	1192	0
chr19	32963230	32964146	CD4_Plagnol_resting.51748	0	.	32963230	32964146	0	1	916	0
chr19	32963748	32964211	H1_rRNA-depleted_UCSD_REMC.70021	0	.	32963748	32964211	0	1	463	0
chr19	32970741	32986837	B_Cells_Pritchard.2555889	0	-	32970741	32986837	0	4	54,83,5513,3768	0,3825,5006,12328
chr19	32973056	32991964	REMC_LuminalBreast.80328	0	+	32973056	32991964	0	3	3342,423,3612	0,7445,15296
chr19	32973248	32988999	MCF7_Burge_Thompson.26082	0	+	32973248	32988999	0	4	1205,205,592,647	0,2945,7253,15104
chr19	32974571	32979074	prostate_normal.47675	0	-	32974571	32979074	0	3	78,233,2795	0,1176,1708
chr19	32975089	32982099	B_cells_Cheung.156103	0	+	32975089	32982099	0	4	1309,78,929,134	0,1703,5412,6876
chr19	32975148	32992806	MIP101.55880	0	+	32975148	32992806	0	3	1250,1464,735	0,5353,16923
chr19	32975417	32982088	B_Cells_Pritchard.2555885	0	+	32975417	32982088	0	3	1819,3292,123	0,2215,6548
chr19	32975490	32991797	HepG2_Caltech_ENCODE.30123	0	+	32975490	32991797	0	2	908,3445	0,12862
chr19	32975683	32991937	ZR751_Thompson.19805	0	+	32975683	32991937	0	2	674,3585	0,12669
chr19	32975734	32991851	MCF10A_Thompson.17557	0	+	32975734	32991851	0	3	664,423,3499	0,4767,12618
chr19	32975744	32976971	MCF7_Burge_Thompson.26083	0	.	32975744	32976971	0	1	1227	0
chr19	32975744	32992760	BT474_Burge_Thompson.28182	0	+	32975744	32992760	0	4	654,160,423,4408	0,966,4757,12608
chr19	32975747	32981421	MDAMB231_Thompson.18088	0	+	32975747	32981421	0	2	651,920	0,4754
chr19	32975825	32976148	breast_Burge.33636	0	.	32975825	32976148	0	1	323	0
chr19	32975831	32989476	T47D_Burge_Thompson.24106	0	+	32975831	32989476	0	2	567,1124	0,12521
chr19	32976198	32979074	prostate_normal.47677	0	.	32976198	32979074	0	1	2876	0
chr19	32976215	32992824	MDAMB468_Thompson.19946	0	+	32976215	32992824	0	3	183,423,4472	0,4286,12137
chr19	32976241	32989524	ENST00000444167	0	+	32976241	32989524	0	2	157,1172	0,12111
chr19	32976241	32989591	HIT000090961	0	+	32976241	32989591	0	2	157,1239	0,12111
chr19	32976300	32980834	HeLa_Bartel_miR-155_12hr.27016	0	+	32976300	32980834	0	2	57,333	0,4201
chr19	32976745	32981355	NEC_from_H9.61004	0	-	32976745	32981355	0	2	225,93	0,4517
chr19	32976759	32989819	HeLa_polyA+_Chen.29437	0	+	32976759	32989819	0	3	111,423,1467	0,3742,11593
chr19	32976771	32979172	HIT000019864	0	+	32976771	32979172	0	1	2401	0
chr19	32976779	32994286	H1_polyA+.93655	0	+	32976779	32994286	0	4	91,423,581,5216	0,3722,11573,12291
chr19	32976784	32981262	brain_AmbionMAQC.36097	0	+	32976784	32981262	0	2	86,761	0,3717
chr19	32976784	32978818	brain_AmbionMAQC.36096	0	.	32976784	32978818	0	1	2034	0
chr19	32977238	32978365	CD4_Plagnol_activated.53156	0	.	32977238	32978365	0	1	1127	0
chr19	32977573	32979909	melanoma_Garraway_short_term_cultures.55124	0	.	32977573	32979909	0	1	2336	0
chr19	32977732	32978813	H9_polyA+.36592	0	.	32977732	32978813	0	1	1081	0
chr19	32978059	32978823	A549_Myers.68178	0	.	32978059	32978823	0	1	764	0
chr19	32980064	32992838	melanoma_Garraway_short_term_cultures.55125	0	+	32980064	32992838	0	2	860,4486	0,8288
chr19	32980064	32982100	melanoma_Garraway_short_term_cultures.55126	0	.	32980064	32982100	0	1	2036	0
chr19	32980166	32981561	CD4_Plagnol_resting.51751	0	.	32980166	32981561	0	1	1395	0
chr19	32980239	32981341	CD4_Plagnol_activated.53158	0	.	32980239	32981341	0	1	1102	0
chr19	32980514	32989033	REMC_BreastStem.40911	0	+	32980514	32989033	0	2	410,681	0,7838
chr19	32980516	32981326	T47D_Burge_Thompson.24107	0	.	32980516	32981326	0	1	810	0
chr19	32980522	32981202	MeI_Garraway.14480	0	.	32980522	32981202	0	1	680	0
chr19	32980570	32988541	HeLa_polyA-_Chen.15935	0	+	32980570	32988541	0	2	354,189	0,7782
chr19	32980822	32981221	liver_polyA+.107511	0	.	32980822	32981221	0	1	399	0
chr19	32985567	32989010	prostate_normal.47687	0	-	32985567	32989010	0	2	213,332	0,3111
chr19	32987071	32992522	B_cells_Cheung.156102	0	.	32987071	32992522	0	1	5451	0
chr19	32987095	32993820	B_Cells_Pritchard.2552863	0	+	32987095	32993820	0	4	2048,2354,89,602	0,2632,5604,6123
chr19	32987286	32990325	CD4_Plagnol_activated.53161	0	.	32987286	32990325	0	1	3039	0
chr19	32987432	32992838	melanoma_Garraway_short_term_cultures.55127	0	.	32987432	32992838	0	1	5406	0
chr19	32987547	32989696	brain_AmbionMAQC.36101	0	.	32987547	32989696	0	1	2149	0
chr19	32987568	32992519	B_Cells_Pritchard.2552865	0	-	32987568	32992519	0	3	30,1473,3312	0,106,1639
chr19	32987605	32989010	A549_Myers.68167	0	.	32987605	32989010	0	1	1405	0
chr19	32987691	32988171	BT474_Burge_Thompson.28185	0	.	32987691	32988171	0	1	480	0
chr19	32987776	32989082	prostate_normal.47688	0	+	32987776	32989082	0	2	1157,12	0,1294
chr19	32987822	32988196	HeLa_polyA+_Chen.29451	0	.	32987822	32988196	0	1	374	0
chr19	32987950	33057153	pHIT000119642	0	+	32987950	33057153	0	5	15,207,149,121,96	0,402,20929,22539,69107
chr19	32987950	33010610	pHIT000032989	0	+	32987950	33010610	0	4	15,207,149,121	0,402,20929,22539
chr19	32988206	32988942	MDAMB231_Thompson.18091	0	.	32988206	32988942	0	1	736	0
chr19	32988293	32988942	MCF7_Burge_Thompson.26084	0	.	32988293	32988942	0	1	649	0
chr19	32988335	32988979	H9_polyA+.36574	0	.	32988335	32988979	0	1	644	0
chr19	32988346	32989043	MeWo_Garraway.29739	0	.	32988346	32989043	0	1	697	0
chr19	32988348	32990325	CD4_Plagnol_resting.51752	0	.	32988348	32990325	0	1	1977	0
chr19	32988351	32989330	MeI_Garraway.14481	0	.	32988351	32989330	0	1	979	0
chr19	32988359	32988676	NEC_from_H9.61008	0	.	32988359	32988676	0	1	317	0
chr19	32988376	32988969	liver_polyA+.107513	0	.	32988376	32988969	0	1	593	0
chr19	32988403	32988800	H9_polyA-_Chen.11888	0	.	32988403	32988800	0	1	397	0
chr19	32988598	32989308	HeLa_polyA-_Chen.15934	0	.	32988598	32989308	0	1	710	0
chr19	32989227	32989680	prostate_normal.47691	0	.	32989227	32989680	0	1	453	0
chr19	32989306	32989621	liver_polyA+.107514	0	.	32989306	32989621	0	1	315	0
chr19	32989323	32989707	HeLa_Bartel_miR-155_12hr.27018	0	.	32989323	32989707	0	1	384	0
chr19	32992610	32993648	HeLa_polyA+_Chen.29412	0	.	32992610	32993648	0	1	1038	0
chr19	32992686	32993719	HepG2_Caltech_ENCODE.30129	0	.	32992686	32993719	0	1	1033	0
chr19	33027328	33028535	prostate_carcinoma.79863	0	.	33027328	33028535	0	1	1207	0
chr19	33034144	33034729	A549_Myers.68164	0	.	33034144	33034729	0	1	585	0
chr19	33058903	33059675	prostate_carcinoma.79868	0	.	33058903	33059675	0	1	772	0
chr19	33065114	33066441	REMC_LuminalBreast.80287	0	.	33065114	33066441	0	1	1327	0
chr19	33071860	33072178	A549_Myers.68185	0	.	33071860	33072178	0	1	318	0
chr19	33087105	33087825	REMC_MyoepithelialBreast.74345	0	.	33087105	33087825	0	1	720	0
chr19	33087157	33088758	prostate_carcinoma.79873	0	.	33087157	33088758	0	1	1601	0
chr19	33087939	33089933	REMC_MyoepithelialBreast.74346	0	.	33087939	33089933	0	1	1994	0
chr19	33090087	33092323	REMC_MyoepithelialBreast.74347	0	.	33090087	33092323	0	1	2236	0
chr19	33091983	33092318	A549_Myers.68186	0	.	33091983	33092318	0	1	335	0
chr19	33092574	33092980	A549_Myers.68187	0	.	33092574	33092980	0	1	406	0
chr19	33094673	33097820	REMC_MyoepithelialBreast.74348	0	.	33094673	33097820	0	1	3147	0
chr19	33094711	33097834	REMC_LuminalBreast.80291	0	.	33094711	33097834	0	1	3123	0
chr19	33096083	33096987	prostate_carcinoma.79875	0	.	33096083	33096987	0	1	904	0
chr19	33138953	33168331	REMC_MyoepithelialBreast.74354	0	+	33138953	33168331	0	7	71,35,101,244,120,163,942	0,2299,7060,9725,14199,27205,28436
chr19	33148660	33168094	REMC_LuminalBreast.80295	0	+	33148660	33168094	0	3	262,163,705	0,17498,18729
chr19	33167152	33168115	prostate_carcinoma.79878	0	.	33167152	33168115	0	1	963	0
chr19	33178607	33190672	B_cells_Cheung.156118	0	+	33178607	33190672	0	3	691,52,424	0,9147,11641
chr19	33203450	33204158	B_cells_Cheung.156126	0	.	33203450	33204158	0	1	708	0
chr19	33251459	33254395	B_cells_Cheung.156139	0	.	33251459	33254395	0	1	2936	0
chr19	33252061	33254652	B_Cells_Pritchard.2553561	0	-	33252061	33254652	0	2	743,149	0,2442
chr19	33259451	33260902	B_cells_Cheung.156146	0	.	33259451	33260902	0	1	1451	0
chr19	33289582	33289884	B_Cells_Pritchard.2553679	0	.	33289582	33289884	0	1	302	0
chr19	33347646	33380537	pHIT000119643	0	+	33347646	33380537	0	2	178,189	0,32702
chr19	33472366	33472921	prostate_carcinoma.79880	0	.	33472366	33472921	0	1	555	0
chr19	33474406	33474714	H1_rRNA-depleted_UCSD_REMC.70033	0	.	33474406	33474714	0	1	308	0
chr19	33490704	33491012	A549_Myers.68199	0	.	33490704	33491012	0	1	308	0
chr19	33596723	33609641	H1_polyA+.93969	0	.	33596723	33609641	0	1	12918	0
chr19	33598654	33614470	K562.36584	0	.	33598654	33614470	0	1	15816	0
chr19	33601322	33728026	K562.36585	0	-	33601322	33728026	0	7	1336,2850,208,219,137,379,655	0,1973,18032,18340,19006,47826,126049
chr19	33605007	33606467	MIP101.55896	0	.	33605007	33606467	0	1	1460	0
chr19	33610183	33610535	A549_Myers.68201	0	.	33610183	33610535	0	1	352	0
chr19	33615160	33616234	H1_polyA+.93973	0	.	33615160	33616234	0	1	1074	0
chr19	33616348	33616705	H1_polyA+.93974	0	.	33616348	33616705	0	1	357	0
chr19	33616854	33620480	K562.36586	0	+	33616854	33620480	0	2	362,2212	0,1414
chr19	33617137	33620030	H1_polyA+.93970	0	.	33617137	33620030	0	1	2893	0
chr19	33618397	33619921	B_cells_Cheung.156161	0	.	33618397	33619921	0	1	1524	0
chr19	33628133	33629095	B_cells_Cheung.156162	0	.	33628133	33629095	0	1	962	0
chr19	33641742	33642449	B_cells_Cheung.156170	0	.	33641742	33642449	0	1	707	0
chr19	33642597	33727911	B_cells_Cheung.156171	0	-	33642597	33727911	0	5	595,704,379,26,540	0,1436,6551,75249,84774
chr19	33646141	33646491	A549_Myers.68203	0	.	33646141	33646491	0	1	350	0
chr19	33647984	33648924	B_cells_Cheung.156174	0	.	33647984	33648924	0	1	940	0
chr19	33667798	33673912	K562.36606	0	.	33667798	33673912	0	1	6114	0
chr19	33671748	33673576	H1_polyA+.93986	0	.	33671748	33673576	0	1	1828	0
chr19	33674596	33815475	HIT000095124	0	-	33674596	33815475	0	2	1174,109	0,140770
chr19	33674608	33676022	H1_polyA+.93987	0	.	33674608	33676022	0	1	1414	0
chr19	33674611	33815475	Rinn_00026844	0	-	33674611	33815475	0	2	1159,110	0,140754
chr19	33674612	33815475	ENST00000512358	0	-	33674612	33815475	0	2	1158,109	0,140754
chr19	33674856	33718248	K562.36608	0	-	33674856	33718248	0	2	914,402	0,42990
chr19	33682916	33683858	H1_polyA+.93989	0	.	33682916	33683858	0	1	942	0
chr19	33684099	33684887	H1_polyA+.93990	0	.	33684099	33684887	0	1	788	0
chr19	33688032	33688899	H1_polyA+.93992	0	.	33688032	33688899	0	1	867	0
chr19	33703449	33745364	pHIT000032990	0	+	33703449	33745364	0	3	72,172,57	0,23569,41858
chr19	33705495	33706511	H1_polyA+.93998	0	.	33705495	33706511	0	1	1016	0
chr19	33707440	33708095	H1_polyA+.94000	0	.	33707440	33708095	0	1	655	0
chr19	33722890	33729970	H1_polyA+.93971	0	.	33722890	33729970	0	1	7080	0
chr19	33730759	33731525	H1_polyA+.94007	0	.	33730759	33731525	0	1	766	0
chr19	33738623	33741017	H1_polyA+.94010	0	.	33738623	33741017	0	1	2394	0
chr19	33741222	33754187	H1_polyA+.94011	0	.	33741222	33754187	0	1	12965	0
chr19	33760092	33763934	H1_polyA+.94015	0	.	33760092	33763934	0	1	3842	0
chr19	33765655	33772868	H1_polyA+.94017	0	.	33765655	33772868	0	1	7213	0
chr19	33773688	33790299	H1_polyA+.94018	0	.	33773688	33790299	0	1	16611	0
chr19	33784497	33785022	B_cells_Cheung.156186	0	.	33784497	33785022	0	1	525	0
chr19	33789251	33798222	K562.40084	0	.	33789251	33798222	0	1	8971	0
chr19	33789266	33790297	B_cells_Cheung.156189	0	.	33789266	33790297	0	1	1031	0
chr19	33789446	33798222	K562.40085	0	+	33789446	33798222	0	3	405,2064,3037	0,3391,5739
chr19	33790442	33793207	H1_polyA+.94020	0	.	33790442	33793207	0	1	2765	0
chr19	33790499	33798269	B_cells_Cheung.156190	0	.	33790499	33798269	0	1	7770	0
chr19	33790499	33798269	B_cells_Cheung.156191	0	+	33790499	33798269	0	2	2579,4541	0,3229
chr19	33793297	33795798	H1_polyA+.94021	0	.	33793297	33795798	0	1	2501	0
chr19	33795906	33800129	H1_polyA+.94022	0	.	33795906	33800129	0	1	4223	0
chr19	33800323	33806329	H1_polyA+.94019	0	.	33800323	33806329	0	1	6006	0
chr19	33800346	33801436	melanoma_Garraway_short_term_cultures.55136	0	.	33800346	33801436	0	1	1090	0
chr19	33800807	33802077	K562.40086	0	.	33800807	33802077	0	1	1270	0
chr19	33815846	33817049	H1_polyA+.94031	0	.	33815846	33817049	0	1	1203	0
chr19	33817693	33827928	H1_polyA+.94032	0	.	33817693	33827928	0	1	10235	0
chr19	33822726	33823790	K562.36380	0	.	33822726	33823790	0	1	1064	0
chr19	33823905	33825726	K562.36381	0	.	33823905	33825726	0	1	1821	0
chr19	33834756	33841870	H1_polyA+.94035	0	.	33834756	33841870	0	1	7114	0
chr19	33837667	33838076	A549_Myers.68211	0	.	33837667	33838076	0	1	409	0
chr19	33973403	33975845	H1_polyA+.93724	0	.	33973403	33975845	0	1	2442	0
chr19	33976146	33976975	A549_Myers.68216	0	.	33976146	33976975	0	1	829	0
chr19	34015874	34016527	A549_Myers.68217	0	.	34015874	34016527	0	1	653	0
chr19	34029167	34029649	B_Cells_Pritchard.2555685	0	.	34029167	34029649	0	1	482	0
chr19	34054119	34054500	A549_Myers.68220	0	.	34054119	34054500	0	1	381	0
chr19	34068471	34069547	melanoma_Garraway_short_term_cultures.55142	0	.	34068471	34069547	0	1	1076	0
chr19	34068800	34069747	MeWo_Garraway.29745	0	.	34068800	34069747	0	1	947	0
chr19	34186344	34194522	brain_AmbionMAQC.36105	0	+	34186344	34194522	0	3	143,79,1045	0,576,7133
chr19	34195272	34196682	brain_AmbionMAQC.36106	0	.	34195272	34196682	0	1	1410	0
chr19	34197171	34198038	brain_AmbionMAQC.36102	0	.	34197171	34198038	0	1	867	0
chr19	34268755	34269180	A549_Myers.68241	0	.	34268755	34269180	0	1	425	0
chr19	34287228	34287552	A549_Myers.68244	0	.	34287228	34287552	0	1	324	0
chr19	34311022	34311820	A549_Myers.68249	0	.	34311022	34311820	0	1	798	0
chr19	34352416	34386011	pHIT000032991	0	+	34352416	34386011	0	4	61,202,168,16	0,16514,23589,33579
chr19	34381524	34382036	B_cells_Cheung.156196	0	.	34381524	34382036	0	1	512	0
chr19	34398678	34399629	B_Cells_Pritchard.2556951	0	+	34398678	34399629	0	1	951	0
chr19	34398876	34399626	B_cells_Cheung.156210	0	.	34398876	34399626	0	1	750	0
chr19	34443172	34443515	A549_Myers.68255	0	.	34443172	34443515	0	1	343	0
chr19	34445971	34446512	A549_Myers.68256	0	.	34445971	34446512	0	1	541	0
chr19	34450873	34451231	A549_Myers.68257	0	.	34450873	34451231	0	1	358	0
chr19	34469757	34708502	HIT000019648	0	-	34469757	34708502	0	10	552,188,194,250,545,162,90,192,80,332	0,104410,105871,108323,109396,110159,111614,125764,141720,238413
chr19	34476554	34477093	A549_Myers.68262	0	.	34476554	34477093	0	1	539	0
chr19	34482339	34482758	A549_Myers.68264	0	.	34482339	34482758	0	1	419	0
chr19	34554441	34554874	A549_Myers.68270	0	.	34554441	34554874	0	1	433	0
chr19	34556144	34556548	A549_Myers.68271	0	.	34556144	34556548	0	1	404	0
chr19	34570220	34570577	A549_Myers.68274	0	.	34570220	34570577	0	1	357	0
chr19	34580189	34580712	A549_Myers.68276	0	.	34580189	34580712	0	1	523	0
chr19	34583308	34583664	A549_Myers.68277	0	.	34583308	34583664	0	1	356	0
chr19	34584495	34584862	A549_Myers.68279	0	.	34584495	34584862	0	1	367	0
chr19	34585079	34585499	A549_Myers.68280	0	.	34585079	34585499	0	1	420	0
chr19	34588087	34588729	A549_Myers.68282	0	.	34588087	34588729	0	1	642	0
chr19	34592868	34593513	brain_AmbionMAQC.36118	0	.	34592868	34593513	0	1	645	0
chr19	34593718	34594076	A549_Myers.68283	0	.	34593718	34594076	0	1	358	0
chr19	34596383	34596690	A549_Myers.68285	0	.	34596383	34596690	0	1	307	0
chr19	34601150	34601463	A549_Myers.68286	0	.	34601150	34601463	0	1	313	0
chr19	34611623	34612007	A549_Myers.68289	0	.	34611623	34612007	0	1	384	0
chr19	34615436	34615840	A549_Myers.68290	0	.	34615436	34615840	0	1	404	0
chr19	34670740	34671464	melanoma_Garraway_short_term_cultures.55156	0	.	34670740	34671464	0	1	724	0
chr19	34670926	34671568	brain_AmbionMAQC.36120	0	.	34670926	34671568	0	1	642	0
chr19	34678629	34679588	brain_AmbionMAQC.36137	0	.	34678629	34679588	0	1	959	0
chr19	34682615	34683097	A549_Myers.68293	0	.	34682615	34683097	0	1	482	0
chr19	34683304	34683661	A549_Myers.68294	0	.	34683304	34683661	0	1	357	0
chr19	34684982	34685467	A549_Myers.68295	0	.	34684982	34685467	0	1	485	0
chr19	34685877	34687523	brain_AmbionMAQC.36138	0	.	34685877	34687523	0	1	1646	0
chr19	34687131	34687585	A549_Myers.68296	0	.	34687131	34687585	0	1	454	0
chr19	34689710	34690126	brain_AmbionMAQC.36139	0	.	34689710	34690126	0	1	416	0
chr19	34689712	34691788	HIT000019794	0	-	34689712	34691788	0	1	2076	0
chr19	34691177	34691897	H1_polyA+.93731	0	.	34691177	34691897	0	1	720	0
chr19	34695451	34696255	melanoma_Garraway_short_term_cultures.55157	0	.	34695451	34696255	0	1	804	0
chr19	34696703	34697029	melanoma_Garraway_short_term_cultures.55158	0	.	34696703	34697029	0	1	326	0
chr19	34697255	34698177	H1_polyA+.93732	0	.	34697255	34698177	0	1	922	0
chr19	34697510	34698423	brain_AmbionMAQC.36140	0	.	34697510	34698423	0	1	913	0
chr19	34698090	34698546	A549_Myers.68300	0	.	34698090	34698546	0	1	456	0
chr19	34699987	34701116	brain_AmbionMAQC.36142	0	.	34699987	34701116	0	1	1129	0
chr19	34700676	34701139	A549_Myers.68303	0	.	34700676	34701139	0	1	463	0
chr19	34701583	34702160	brain_AmbionMAQC.36143	0	.	34701583	34702160	0	1	577	0
chr19	34702263	34702870	brain_AmbionMAQC.36144	0	.	34702263	34702870	0	1	607	0
chr19	34703157	34703682	A549_Myers.68306	0	.	34703157	34703682	0	1	525	0
chr19	34758729	34759083	A549_Myers.68322	0	.	34758729	34759083	0	1	354	0
chr19	34771904	34772398	B_Cells_Pritchard.2557651	0	.	34771904	34772398	0	1	494	0
chr19	34774244	34775166	B_Cells_Pritchard.2557655	0	.	34774244	34775166	0	1	922	0
chr19	34777038	34777356	A549_Myers.68326	0	.	34777038	34777356	0	1	318	0
chr19	34802000	34803168	REMC_MyoepithelialBreast.74364	0	.	34802000	34803168	0	1	1168	0
chr19	34803483	34804229	A549_Myers.68330	0	.	34803483	34804229	0	1	746	0
chr19	34805377	34807617	REMC_MyoepithelialBreast.74365	0	.	34805377	34807617	0	1	2240	0
chr19	34806878	34807383	A549_Myers.68333	0	.	34806878	34807383	0	1	505	0
chr19	34810943	34813800	REMC_MyoepithelialBreast.74367	0	.	34810943	34813800	0	1	2857	0
chr19	34814056	34814714	prostate_carcinoma.79891	0	.	34814056	34814714	0	1	658	0
chr19	34818668	34820813	REMC_MyoepithelialBreast.74369	0	.	34818668	34820813	0	1	2145	0
chr19	34819739	34820921	REMC_LuminalBreast.80305	0	.	34819739	34820921	0	1	1182	0
chr19	34826105	34827866	REMC_MyoepithelialBreast.74372	0	.	34826105	34827866	0	1	1761	0
chr19	34827533	34829679	REMC_LuminalBreast.80308	0	.	34827533	34829679	0	1	2146	0
chr19	34833587	34834418	B_Cells_Pritchard.2557781	0	.	34833587	34834418	0	1	831	0
chr19	34834056	34839119	REMC_MyoepithelialBreast.74378	0	.	34834056	34839119	0	1	5063	0
chr19	34839170	34841703	REMC_MyoepithelialBreast.74373	0	.	34839170	34841703	0	1	2533	0
chr19	34839698	34840669	MIP101.55905	0	.	34839698	34840669	0	1	971	0
chr19	34839785	34840275	MeWo_Garraway.29755	0	.	34839785	34840275	0	1	490	0
chr19	34839818	34840192	prostate_normal.47696	0	.	34839818	34840192	0	1	374	0
chr19	34842663	34843094	B_Cells_Pritchard.2557821	0	-	34842663	34843094	0	1	431	0
chr19	34842756	34843291	B_cells_Cheung.156225	0	.	34842756	34843291	0	1	535	0
chr19	34844941	34846345	B_Cells_Pritchard.2557833	0	-	34844941	34846345	0	1	1404	0
chr19	34845201	34846091	H1_polyA+.93740	0	.	34845201	34846091	0	1	890	0
chr19	34859448	34860613	A549_Myers.68347	0	.	34859448	34860613	0	1	1165	0
chr19	34860100	34860592	B_Cells_Pritchard.2557909	0	.	34860100	34860592	0	1	492	0
chr19	34860893	34862153	B_Cells_Pritchard.2557913	0	.	34860893	34862153	0	1	1260	0
chr19	34860925	34861459	B_cells_Cheung.156227	0	.	34860925	34861459	0	1	534	0
chr19	34861607	34863313	B_cells_Cheung.156228	0	.	34861607	34863313	0	1	1706	0
chr19	34862254	34867502	REMC_MyoepithelialBreast.74380	0	.	34862254	34867502	0	1	5248	0
chr19	34862426	34863763	B_Cells_Pritchard.2557917	0	.	34862426	34863763	0	1	1337	0
chr19	34863330	34864344	A549_Myers.68358	0	.	34863330	34864344	0	1	1014	0
chr19	34863924	34864299	B_cells_Cheung.156229	0	.	34863924	34864299	0	1	375	0
chr19	34864677	34865023	A549_Myers.68359	0	.	34864677	34865023	0	1	346	0
chr19	34867597	34870754	B_cells_Cheung.156232	0	.	34867597	34870754	0	1	3157	0
chr19	34869539	34872306	REMC_MyoepithelialBreast.74383	0	.	34869539	34872306	0	1	2767	0
chr19	34869584	34870341	REMC_BreastStem.40918	0	.	34869584	34870341	0	1	757	0
chr19	34869889	34870666	prostate_carcinoma.79944	0	.	34869889	34870666	0	1	777	0
chr19	34869907	34870646	brain_AmbionMAQC.36123	0	.	34869907	34870646	0	1	739	0
chr19	34869977	34870374	A549_Myers.68361	0	.	34869977	34870374	0	1	397	0
chr19	34872734	34879429	REMC_LuminalBreast.80313	0	.	34872734	34879429	0	1	6695	0
chr19	34872936	34875407	REMC_MyoepithelialBreast.74384	0	.	34872936	34875407	0	1	2471	0
chr19	34874623	34875041	B_cells_Cheung.156235	0	.	34874623	34875041	0	1	418	0
chr19	34876274	34878650	REMC_MyoepithelialBreast.74385	0	.	34876274	34878650	0	1	2376	0
chr19	34876315	34876864	B_cells_Cheung.156237	0	.	34876315	34876864	0	1	549	0
chr19	34876753	34878098	brain_AmbionMAQC.36127	0	.	34876753	34878098	0	1	1345	0
chr19	34877053	34877706	prostate_normal.47724	0	.	34877053	34877706	0	1	653	0
chr19	34877453	34879425	B_cells_Cheung.156239	0	.	34877453	34879425	0	1	1972	0
chr19	34877698	34878593	BT474_Burge_Thompson.28192	0	.	34877698	34878593	0	1	895	0
chr19	34877768	34879305	Rinn_00027288	0	-	34877768	34879305	0	2	366,84	0,1453
chr19	34878214	34879320	brain_AmbionMAQC.36128	0	.	34878214	34879320	0	1	1106	0
chr19	34878699	34879069	skeletal_muscle_Raymond.76875	0	.	34878699	34879069	0	1	370	0
chr19	34879792	34880233	REMC_LuminalBreast.80314	0	.	34879792	34880233	0	1	441	0
chr19	34905873	34907384	B_Cells_Pritchard.2558031	0	.	34905873	34907384	0	1	1511	0
chr19	34937501	34937861	A549_Myers.68382	0	.	34937501	34937861	0	1	360	0
chr19	34940528	34940967	A549_Myers.68392	0	.	34940528	34940967	0	1	439	0
chr19	34942721	34943211	A549_Myers.68393	0	.	34942721	34943211	0	1	490	0
chr19	34951430	34953103	A549_Myers.68397	0	-	34951430	34953103	0	2	333,302	0,1371
chr19	34954315	34954704	A549_Myers.68399	0	.	34954315	34954704	0	1	389	0
chr19	34957874	34958194	A549_Myers.68402	0	.	34957874	34958194	0	1	320	0
chr19	34960723	34961593	A549_Myers.68403	0	.	34960723	34961593	0	1	870	0
chr19	34962472	34962962	B_Cells_Pritchard.2558209	0	.	34962472	34962962	0	1	490	0
chr19	34962594	34963178	A549_Myers.68404	0	.	34962594	34963178	0	1	584	0
chr19	34964286	34964751	A549_Myers.68405	0	.	34964286	34964751	0	1	465	0
chr19	34964506	34964818	B_Cells_Pritchard.2558221	0	.	34964506	34964818	0	1	312	0
chr19	34966530	34967128	A549_Myers.68407	0	.	34966530	34967128	0	1	598	0
chr19	34974240	34974867	A549_Myers.68409	0	.	34974240	34974867	0	1	627	0
chr19	34975856	34976308	BT474_Burge_Thompson.28198	0	.	34975856	34976308	0	1	452	0
chr19	34975971	34976488	B_Cells_Pritchard.2558275	0	.	34975971	34976488	0	1	517	0
chr19	34989728	34991033	B_Cells_Pritchard.2558343	0	.	34989728	34991033	0	1	1305	0
chr19	34989733	34990207	B_cells_Cheung.156270	0	.	34989733	34990207	0	1	474	0
chr19	34991296	34991603	B_cells_Cheung.156272	0	.	34991296	34991603	0	1	307	0
chr19	34992603	34993577	B_cells_Cheung.156274	0	.	34992603	34993577	0	1	974	0
chr19	35014432	35014909	A549_Myers.68422	0	.	35014432	35014909	0	1	477	0
chr19	35016171	35016654	A549_Myers.68424	0	.	35016171	35016654	0	1	483	0
chr19	35024114	35104399	pHIT000119658	0	+	35024114	35104399	0	2	80,490	0,79795
chr19	35026023	35026658	A549_Myers.68416	0	.	35026023	35026658	0	1	635	0
chr19	35026977	35027495	A549_Myers.68417	0	.	35026977	35027495	0	1	518	0
chr19	35027558	35028770	A549_Myers.68418	0	.	35027558	35028770	0	1	1212	0
chr19	35041276	35041857	A549_Myers.68428	0	.	35041276	35041857	0	1	581	0
chr19	35041670	35042028	B_Cells_Pritchard.2558517	0	-	35041670	35042028	0	1	358	0
chr19	35055728	35056931	A549_Myers.68426	0	.	35055728	35056931	0	1	1203	0
chr19	35057020	35057494	A549_Myers.68425	0	.	35057020	35057494	0	1	474	0
chr19	35061726	35063902	A549_Myers.68433	0	-	35061726	35063902	0	2	682,76	0,2100
chr19	35092430	35092743	B_Cells_Pritchard.2558663	0	.	35092430	35092743	0	1	313	0
chr19	35104048	35104405	MIP101.55915	0	.	35104048	35104405	0	1	357	0
chr19	35104061	35104483	A549_Myers.68437	0	.	35104061	35104483	0	1	422	0
chr19	35212408	35213721	B_Cells_Pritchard.2559159	0	.	35212408	35213721	0	1	1313	0
chr19	35233914	35235584	B_Cells_Pritchard.2559229	0	.	35233914	35235584	0	1	1670	0
chr19	35234220	35235452	prostate_carcinoma.79936	0	.	35234220	35235452	0	1	1232	0
chr19	35237778	35239318	REMC_LuminalBreast.80350	0	.	35237778	35239318	0	1	1540	0
chr19	35241368	35242953	B_Cells_Pritchard.2559251	0	.	35241368	35242953	0	1	1585	0
chr19	35241642	35242792	melanoma_Garraway_short_term_cultures.55196	0	.	35241642	35242792	0	1	1150	0
chr19	35243965	35244552	B_Cells_Pritchard.2559257	0	.	35243965	35244552	0	1	587	0
chr19	35244063	35244635	prostate_carcinoma.79938	0	.	35244063	35244635	0	1	572	0
chr19	35244064	35246348	A549_Myers.68448	0	+	35244064	35246348	0	2	335,1547	0,737
chr19	35246477	35246998	A549_Myers.68447	0	.	35246477	35246998	0	1	521	0
chr19	35249198	35249566	A549_Myers.68451	0	.	35249198	35249566	0	1	368	0
chr19	35253315	35253630	A549_Myers.68453	0	.	35253315	35253630	0	1	315	0
chr19	35259889	35260285	A549_Myers.68457	0	.	35259889	35260285	0	1	396	0
chr19	35260675	35261253	A549_Myers.68458	0	.	35260675	35261253	0	1	578	0
chr19	35273292	35273644	A549_Myers.68462	0	.	35273292	35273644	0	1	352	0
chr19	35276868	35277630	A549_Myers.68464	0	.	35276868	35277630	0	1	762	0
chr19	35277962	35278477	A549_Myers.68465	0	.	35277962	35278477	0	1	515	0
chr19	35279264	35279666	A549_Myers.68466	0	.	35279264	35279666	0	1	402	0
chr19	35286450	35287044	B_Cells_Pritchard.2559449	0	.	35286450	35287044	0	1	594	0
chr19	35287210	35287594	B_Cells_Pritchard.2559447	0	.	35287210	35287594	0	1	384	0
chr19	35287695	35288507	B_Cells_Pritchard.2559451	0	.	35287695	35288507	0	1	812	0
chr19	35287879	35288296	A549_Myers.68468	0	.	35287879	35288296	0	1	417	0
chr19	35289476	35289997	BT474_Burge_Thompson.28202	0	.	35289476	35289997	0	1	521	0
chr19	35289647	35290058	A549_Myers.68469	0	.	35289647	35290058	0	1	411	0
chr19	35298620	35299552	B_Cells_Pritchard.2559489	0	.	35298620	35299552	0	1	932	0
chr19	35298638	35299334	BT474_Burge_Thompson.28203	0	.	35298638	35299334	0	1	696	0
chr19	35302374	35302687	B_Cells_Pritchard.2559503	0	.	35302374	35302687	0	1	313	0
chr19	35315424	35315936	A549_Myers.68480	0	.	35315424	35315936	0	1	512	0
chr19	35331413	35332015	A549_Myers.68485	0	.	35331413	35332015	0	1	602	0
chr19	35332538	35332860	A549_Myers.68486	0	.	35332538	35332860	0	1	322	0
chr19	35335490	35335856	A549_Myers.68488	0	.	35335490	35335856	0	1	366	0
chr19	35349831	35350246	A549_Myers.68490	0	.	35349831	35350246	0	1	415	0
chr19	35352051	35352921	A549_Myers.68492	0	.	35352051	35352921	0	1	870	0
chr19	35390052	35390584	A549_Myers.68496	0	.	35390052	35390584	0	1	532	0
chr19	35405183	35405780	A549_Myers.68499	0	.	35405183	35405780	0	1	597	0
chr19	35409868	35410863	A549_Myers.68503	0	.	35409868	35410863	0	1	995	0
chr19	35807889	35831349	pHIT000033007	0	+	35807889	35831349	0	2	30,279	0,23181
chr19	35813800	35814272	A549_Myers.68551	0	.	35813800	35814272	0	1	472	0
chr19	35848930	35849286	A549_Myers.68556	0	.	35848930	35849286	0	1	356	0
chr19	35850216	35893748	pHIT000033008	0	+	35850216	35893748	0	4	27,120,67,245	0,7798,19130,43287
chr19	35850216	35893748	pHIT000093974	0	+	35850216	35893748	0	4	27,120,13,245	0,7798,17795,43287
chr19	35852033	35852937	A549_Myers.68558	0	.	35852033	35852937	0	1	904	0
chr19	35856246	35856577	A549_Myers.68559	0	.	35856246	35856577	0	1	331	0
chr19	35894546	35896276	prostate_carcinoma.79962	0	.	35894546	35896276	0	1	1730	0
chr19	35894710	35896380	melanoma_Garraway_short_term_cultures.55205	0	.	35894710	35896380	0	1	1670	0
chr19	35895062	35896090	MeI_Garraway.14487	0	.	35895062	35896090	0	1	1028	0
chr19	35963567	35994424	pHIT000119668	0	-	35963567	35994424	0	6	93,69,174,187,67,127	0,1983,12344,18981,20318,30730
chr19	36095296	36095870	A549_Myers.68570	0	.	36095296	36095870	0	1	574	0
chr19	36256045	36256634	B_Cells_Pritchard.2562135	0	.	36256045	36256634	0	1	589	0
chr19	36278122	36278557	BT474_Burge_Thompson.28205	0	.	36278122	36278557	0	1	435	0
chr19	36285041	36285629	BT474_Burge_Thompson.28206	0	.	36285041	36285629	0	1	588	0
chr19	36292960	36293379	A549_Myers.68581	0	.	36292960	36293379	0	1	419	0
chr19	36309324	36311606	HIT000015415	0	-	36309324	36311606	0	1	2282	0
chr19	36333082	36334279	prostate_normal.47738	0	.	36333082	36334279	0	1	1197	0
chr19	36363852	36365142	REMC_MyoepithelialBreast.74426	0	.	36363852	36365142	0	1	1290	0
chr19	36363871	36365047	prostate_carcinoma.79965	0	.	36363871	36365047	0	1	1176	0
chr19	36422756	36425622	H1_polyA+.93774	0	.	36422756	36425622	0	1	2866	0
chr19	36423193	36425625	prostate_carcinoma.79970	0	.	36423193	36425625	0	1	2432	0
chr19	36424190	36425589	REMC_MyoepithelialBreast.74428	0	.	36424190	36425589	0	1	1399	0
chr19	36424678	36425546	REMC_BreastStem.40950	0	.	36424678	36425546	0	1	868	0
chr19	36424936	36425604	prostate_normal.47742	0	.	36424936	36425604	0	1	668	0
chr19	36915632	36916337	B_Cells_Pritchard.2563755	0	.	36915632	36916337	0	1	705	0
chr19	37011378	37011823	A549_Myers.68633	0	.	37011378	37011823	0	1	445	0
chr19	37091235	37091567	A549_Myers.68634	0	.	37091235	37091567	0	1	332	0
chr19	37149643	37208741	Rinn_00027297	0	-	37149643	37208741	0	3	736,134,282	0,43525,58816
chr19	37206169	37206481	A549_Myers.68639	0	.	37206169	37206481	0	1	312	0
chr19	37254358	37254836	Rinn_00027298	0	-	37254358	37254836	0	2	315,41	0,437
chr19	37276594	37361954	pHIT000119676	0	+	37276594	37361954	0	3	59,79,303	0,11072,85057
chr19	37364297	37364667	A549_Myers.68648	0	.	37364297	37364667	0	1	370	0
chr19	37405875	37406408	B_Cells_Pritchard.2565103	0	.	37405875	37406408	0	1	533	0
chr19	37448663	37449126	A549_Myers.68660	0	.	37448663	37449126	0	1	463	0
chr19	37469949	37471224	A549_Myers.68662	0	+	37469949	37471224	0	2	40,310	0,965
chr19	37572454	37577548	B_cells_Cheung.156336	0	.	37572454	37577548	0	1	5094	0
chr19	37572498	37582599	B_Cells_Pritchard.2565559	0	+	37572498	37582599	0	6	682,819,1923,468,66,111	0,799,2123,4238,8629,9990
chr19	37572790	37573149	prostate_normal.47785	0	.	37572790	37573149	0	1	359	0
chr19	37572794	37582599	B_Cells_Pritchard.2565561	0	-	37572794	37582599	0	7	285,212,970,930,197,24,103	0,1067,1722,2760,6542,9033,9702
chr19	37572801	37573142	prostate_carcinoma.80071	0	.	37572801	37573142	0	1	341	0
chr19	37572802	37573149	A549_Myers.68684	0	.	37572802	37573149	0	1	347	0
chr19	37577648	37579478	B_cells_Cheung.156339	0	.	37577648	37579478	0	1	1830	0
chr19	37583243	37584603	prostate_carcinoma.80075	0	.	37583243	37584603	0	1	1360	0
chr19	37584039	37584538	K562.36468	0	.	37584039	37584538	0	1	499	0
chr19	37584218	37585138	melanoma_Garraway_short_term_cultures.55217	0	.	37584218	37585138	0	1	920	0
chr19	37584233	37585208	REMC_LuminalBreast.80358	0	.	37584233	37585208	0	1	975	0
chr19	37676956	37677390	B_Cells_Pritchard.2565823	0	.	37676956	37677390	0	1	434	0
chr19	37776352	37779239	B_Cells_Pritchard.2567039	0	+	37776352	37779239	0	2	373,886	0,2001
chr19	37862436	37863007	MDAMB468_Thompson.19827	0	.	37862436	37863007	0	1	571	0
chr19	37898400	37898869	B_cells_Cheung.156429	0	.	37898400	37898869	0	1	469	0
chr19	37899041	37899745	B_cells_Cheung.156430	0	.	37899041	37899745	0	1	704	0
chr19	38005478	38008508	B_cells_Cheung.156434	0	.	38005478	38008508	0	1	3030	0
chr19	38006742	38007356	A549_Myers.68760	0	.	38006742	38007356	0	1	614	0
chr19	38006827	38008268	prostate_carcinoma.80057	0	.	38006827	38008268	0	1	1441	0
chr19	38058270	38060649	HepG2_Caltech_ENCODE.30181	0	.	38058270	38060649	0	1	2379	0
chr19	38058330	38060600	prostate_normal.47843	0	.	38058330	38060600	0	1	2270	0
chr19	38058464	38060627	BT474_Burge_Thompson.28231	0	.	38058464	38060627	0	1	2163	0
chr19	38058563	38060634	ZR751_Thompson.19845	0	.	38058563	38060634	0	1	2071	0
chr19	38058616	38060615	MDAMB231_Thompson.18118	0	.	38058616	38060615	0	1	1999	0
chr19	38058667	38060644	H9_polyA+.36656	0	.	38058667	38060644	0	1	1977	0
chr19	38058668	38060577	melanoma_Garraway_short_term_cultures.55257	0	.	38058668	38060577	0	1	1909	0
chr19	38058669	38060499	brain_AmbionMAQC.36201	0	.	38058669	38060499	0	1	1830	0
chr19	38058669	38059922	CD4_Plagnol_resting.51827	0	.	38058669	38059922	0	1	1253	0
chr19	38058670	38060422	K562.36503	0	.	38058670	38060422	0	1	1752	0
chr19	38058670	38060636	B_cells_Cheung.156439	0	.	38058670	38060636	0	1	1966	0
chr19	38058672	38060449	REMC_BreastStem.40985	0	.	38058672	38060449	0	1	1777	0
chr19	38058682	38060616	CD4_Plagnol_activated.53389	0	.	38058682	38060616	0	1	1934	0
chr19	38058682	38060611	MCF7_Burge_Thompson.26145	0	.	38058682	38060611	0	1	1929	0
chr19	38058683	38060620	BT20_Thompson.17847	0	.	38058683	38060620	0	1	1937	0
chr19	38058684	38060592	T47D_Burge_Thompson.24134	0	.	38058684	38060592	0	1	1908	0
chr19	38058685	38060379	HME_Burge.33919	0	+	38058685	38060379	0	2	227,143	0,1551
chr19	38058692	38060614	MDAMB468_Thompson.19836	0	.	38058692	38060614	0	1	1922	0
chr19	38058723	38060624	MCF10A_Thompson.17593	0	.	38058723	38060624	0	1	1901	0
chr19	38058976	38060487	A549_Myers.68775	0	.	38058976	38060487	0	1	1511	0
chr19	38058987	38059454	lymph_node_Burge.41481	0	.	38058987	38059454	0	1	467	0
chr19	38058999	38059472	HME_Burge.33920	0	.	38058999	38059472	0	1	473	0
chr19	38059005	38059472	testes_Burge.43665	0	.	38059005	38059472	0	1	467	0
chr19	38059013	38060640	HeLa_polyA+_Chen.29495	0	.	38059013	38060640	0	1	1627	0
chr19	38059013	38059455	IMR90_UCSD_REMC.40411	0	+	38059013	38059455	0	1	442	0
chr19	38059064	38059572	adipose_Burge.32189	0	.	38059064	38059572	0	1	508	0
chr19	38059084	38059440	skeletal_muscle_Burge.24255	0	.	38059084	38059440	0	1	356	0
chr19	38059091	38059565	colon_Burge.31406	0	.	38059091	38059565	0	1	474	0
chr19	38059108	38059467	breast_Burge.33672	0	.	38059108	38059467	0	1	359	0
chr19	38252416	38252742	A549_Myers.68785	0	.	38252416	38252742	0	1	326	0
chr19	38492249	38493655	prostate_carcinoma.80132	0	.	38492249	38493655	0	1	1406	0
chr19	38492484	38493149	A549_Myers.68921	0	.	38492484	38493149	0	1	665	0
chr19	38494029	38494650	prostate_carcinoma.80133	0	.	38494029	38494650	0	1	621	0
chr19	38705989	38708515	melanoma_Garraway_short_term_cultures.55318	0	+	38705989	38708515	0	2	253,880	0,1646
chr19	38707155	38707560	A549_Myers.68977	0	.	38707155	38707560	0	1	405	0
chr19	38707571	38708537	H1_polyA+.94060	0	.	38707571	38708537	0	1	966	0
chr19	38707765	38708511	B_Cells_Pritchard.2568609	0	.	38707765	38708511	0	1	746	0
chr19	38707837	38708245	A549_Myers.68978	0	.	38707837	38708245	0	1	408	0
chr19	38716622	38716957	A549_Myers.68981	0	.	38716622	38716957	0	1	335	0
chr19	38717850	38718235	A549_Myers.68982	0	.	38717850	38718235	0	1	385	0
chr19	38721392	38721814	A549_Myers.68983	0	.	38721392	38721814	0	1	422	0
chr19	38726062	38726462	B_Cells_Pritchard.2568695	0	.	38726062	38726462	0	1	400	0
chr19	38731982	38732326	A549_Myers.68988	0	.	38731982	38732326	0	1	344	0
chr19	38737090	38737508	A549_Myers.68990	0	.	38737090	38737508	0	1	418	0
chr19	38737278	38737831	B_cells_Cheung.156617	0	.	38737278	38737831	0	1	553	0
chr19	38741087	38741636	A549_Myers.68992	0	.	38741087	38741636	0	1	549	0
chr19	38741742	38742127	A549_Myers.68993	0	.	38741742	38742127	0	1	385	0
chr19	38742940	38743413	A549_Myers.68994	0	.	38742940	38743413	0	1	473	0
chr19	38795657	38796050	A549_Myers.69009	0	.	38795657	38796050	0	1	393	0
chr19	38959538	38959990	A549_Myers.69070	0	.	38959538	38959990	0	1	452	0
chr19	38960277	38962273	A549_Myers.69071	0	.	38960277	38962273	0	1	1996	0
chr19	38963057	38963858	A549_Myers.69073	0	.	38963057	38963858	0	1	801	0
chr19	39000626	39001428	melanoma_Garraway_short_term_cultures.55332	0	.	39000626	39001428	0	1	802	0
chr19	39002444	39005905	A549_Myers.69078	0	+	39002444	39005905	0	2	1346,45	0,3416
chr19	39003279	39004148	melanoma_Garraway_short_term_cultures.55333	0	.	39003279	39004148	0	1	869	0
chr19	39003420	39004101	REMC_MyoepithelialBreast.74556	0	.	39003420	39004101	0	1	681	0
chr19	39003800	39004188	A549_Myers.69079	0	.	39003800	39004188	0	1	388	0
chr19	39011253	39011626	A549_Myers.69081	0	.	39011253	39011626	0	1	373	0
chr19	39031966	39033083	BT474_Burge_Thompson.28281	0	.	39031966	39033083	0	1	1117	0
chr19	39049500	39049947	A549_Myers.69087	0	.	39049500	39049947	0	1	447	0
chr19	39051534	39052170	A549_Myers.69088	0	.	39051534	39052170	0	1	636	0
chr19	39066377	39066894	A549_Myers.69090	0	.	39066377	39066894	0	1	517	0
chr19	39077430	39077952	A549_Myers.69092	0	.	39077430	39077952	0	1	522	0
chr19	39086675	39088846	REMC_LuminalBreast.80538	0	.	39086675	39088846	0	1	2171	0
chr19	39086695	39088906	BT474_Burge_Thompson.28285	0	.	39086695	39088906	0	1	2211	0
chr19	39086697	39097102	H1_polyA+.94066	0	.	39086697	39097102	0	1	10405	0
chr19	39086698	39087428	BT20_Thompson.17897	0	.	39086698	39087428	0	1	730	0
chr19	39086703	39087425	prostate_carcinoma.80175	0	.	39086703	39087425	0	1	722	0
chr19	39086708	39087439	ZR751_Thompson.19874	0	.	39086708	39087439	0	1	731	0
chr19	39087392	39090392	NEC_from_H9.61184	0	-	39087392	39090392	0	2	54,383	0,2617
chr19	39087572	39088790	BT20_Thompson.17898	0	.	39087572	39088790	0	1	1218	0
chr19	39087584	39090729	prostate_carcinoma.80176	0	.	39087584	39090729	0	1	3145	0
chr19	39087615	39088650	ZR751_Thompson.19876	0	.	39087615	39088650	0	1	1035	0
chr19	39087618	39088820	MCF7_Burge_Thompson.26173	0	.	39087618	39088820	0	1	1202	0
chr19	39087713	39088266	REMC_MyoepithelialBreast.74546	0	.	39087713	39088266	0	1	553	0
chr19	39087878	39088980	prostate_normal.47900	0	.	39087878	39088980	0	1	1102	0
chr19	39087934	39088985	MDAMB468_Thompson.19862	0	.	39087934	39088985	0	1	1051	0
chr19	39088669	39089239	A549_Myers.69093	0	.	39088669	39089239	0	1	570	0
chr19	39088986	39091148	MCF7_Burge_Thompson.26174	0	.	39088986	39091148	0	1	2162	0
chr19	39088996	39091185	BT20_Thompson.17901	0	.	39088996	39091185	0	1	2189	0
chr19	39089001	39091102	ZR751_Thompson.19877	0	.	39089001	39091102	0	1	2101	0
chr19	39089021	39091262	T47D_Burge_Thompson.24186	0	.	39089021	39091262	0	1	2241	0
chr19	39089051	39091637	MDAMB468_Thompson.19864	0	.	39089051	39091637	0	1	2586	0
chr19	39089062	39090499	prostate_normal.47901	0	.	39089062	39090499	0	1	1437	0
chr19	39089077	39091106	H9_polyA+.36696	0	.	39089077	39091106	0	1	2029	0
chr19	39089095	39090631	REMC_LuminalBreast.80539	0	.	39089095	39090631	0	1	1536	0
chr19	39089096	39091136	HIT000043953	0	-	39089096	39091136	0	1	2040	0
chr19	39089105	39089413	liver_polyA+.107786	0	.	39089105	39089413	0	1	308	0
chr19	39089170	39090392	brain_AmbionMAQC.36243	0	.	39089170	39090392	0	1	1222	0
chr19	39089320	39090206	A549_Myers.69094	0	.	39089320	39090206	0	1	886	0
chr19	39089371	39090658	MIP101.56106	0	.	39089371	39090658	0	1	1287	0
chr19	39089550	39090513	liver_polyA+.107787	0	.	39089550	39090513	0	1	963	0
chr19	39089603	39090740	BT474_Burge_Thompson.28286	0	.	39089603	39090740	0	1	1137	0
chr19	39089652	39090392	NEC_from_H9.61185	0	.	39089652	39090392	0	1	740	0
chr19	39089686	39090850	REMC_MyoepithelialBreast.74547	0	.	39089686	39090850	0	1	1164	0
chr19	39111240	39111617	A549_Myers.69096	0	.	39111240	39111617	0	1	377	0
chr19	39130573	39131059	A549_Myers.69099	0	.	39130573	39131059	0	1	486	0
chr19	39143320	39144021	melanoma_Garraway_short_term_cultures.55335	0	.	39143320	39144021	0	1	701	0
chr19	39146423	39146924	A549_Myers.69101	0	.	39146423	39146924	0	1	501	0
chr19	39179794	39181439	melanoma_Garraway_short_term_cultures.55336	0	.	39179794	39181439	0	1	1645	0
chr19	39180012	39180847	MeWo_Garraway.29857	0	.	39180012	39180847	0	1	835	0
chr19	39316961	39317886	A549_Myers.69119	0	.	39316961	39317886	0	1	925	0
chr19	39317068	39318340	HeLa_polyA+_Chen.29528	0	.	39317068	39318340	0	1	1272	0
chr19	39317306	39322157	B_Cells_Pritchard.2570541	0	-	39317306	39322157	0	2	973,64	0,4787
chr19	39317306	39324677	B_Cells_Pritchard.2570543	0	+	39317306	39324677	0	2	728,32	0,7339
chr19	39317342	39318156	B_cells_Cheung.156627	0	.	39317342	39318156	0	1	814	0
chr19	39317366	39318757	REMC_MyoepithelialBreast.74548	0	.	39317366	39318757	0	1	1391	0
chr19	39317371	39318076	REMC_BreastStem.41023	0	.	39317371	39318076	0	1	705	0
chr19	39336390	39336718	A549_Myers.69121	0	.	39336390	39336718	0	1	328	0
chr19	39351837	39353926	REMC_LuminalBreast.80541	0	.	39351837	39353926	0	1	2089	0
chr19	39352662	39353950	H1_polyA+.94162	0	.	39352662	39353950	0	1	1288	0
chr19	39352665	39353057	B_cells_Cheung.156630	0	.	39352665	39353057	0	1	392	0
chr19	39352669	39353041	B_Cells_Pritchard.2570631	0	-	39352669	39353041	0	1	372	0
chr19	39352737	39353049	prostate_carcinoma.80180	0	.	39352737	39353049	0	1	312	0
chr19	39415005	39422827	REMC_MyoepithelialBreast.74576	0	.	39415005	39422827	0	1	7822	0
chr19	39417700	39422237	REMC_LuminalBreast.80543	0	.	39417700	39422237	0	1	4537	0
chr19	39420881	39422069	H1_polyA+.94127	0	.	39420881	39422069	0	1	1188	0
chr19	39421365	39422182	melanoma_Garraway_short_term_cultures.55376	0	.	39421365	39422182	0	1	817	0
chr19	39421603	39422184	B_cells_Cheung.156668	0	.	39421603	39422184	0	1	581	0
chr19	39426126	39428922	REMC_LuminalBreast.80546	0	.	39426126	39428922	0	1	2796	0
chr19	39430008	39431288	REMC_MyoepithelialBreast.74560	0	.	39430008	39431288	0	1	1280	0
chr19	39539340	39540414	CD4_Plagnol_activated.53483	0	.	39539340	39540414	0	1	1074	0
chr19	39539361	39540765	H1_polyA+.94160	0	.	39539361	39540765	0	1	1404	0
chr19	39539487	39541264	REMC_MyoepithelialBreast.74602	0	.	39539487	39541264	0	1	1777	0
chr19	39539848	39540825	prostate_carcinoma.81081	0	.	39539848	39540825	0	1	977	0
chr19	39539908	39540365	CD4_Plagnol_resting.51909	0	.	39539908	39540365	0	1	457	0
chr19	39539923	39540843	A549_Myers.69455	0	.	39539923	39540843	0	1	920	0
chr19	39539955	39540638	K562.36565	0	.	39539955	39540638	0	1	683	0
chr19	39540490	39541603	REMC_LuminalBreast.80582	0	.	39540490	39541603	0	1	1113	0
chr19	39540961	39541663	brain_AmbionMAQC.36426	0	.	39540961	39541663	0	1	702	0
chr19	39540968	39541879	prostate_normal.48151	0	.	39540968	39541879	0	1	911	0
chr19	39541050	39541603	H1_polyA+.94161	0	.	39541050	39541603	0	1	553	0
chr19	39541364	39542189	REMC_MyoepithelialBreast.74603	0	.	39541364	39542189	0	1	825	0
chr19	39656728	39657263	CD4_Plagnol_resting.51960	0	.	39656728	39657263	0	1	535	0
chr19	39658500	39659898	CD4_Plagnol_activated.53522	0	.	39658500	39659898	0	1	1398	0
chr19	39658597	39659920	melanoma_Garraway_short_term_cultures.55427	0	.	39658597	39659920	0	1	1323	0
chr19	39658718	39659933	CD4_Plagnol_resting.51962	0	.	39658718	39659933	0	1	1215	0
chr19	39659003	39663224	A549_Myers.69480	0	-	39659003	39663224	0	2	935,61	0,4160
chr19	39659137	39659841	REMC_BreastStem.41048	0	.	39659137	39659841	0	1	704	0
chr19	39659309	39659866	HepG2_Caltech_ENCODE.30260	0	.	39659309	39659866	0	1	557	0
chr19	39659319	39659787	prostate_normal.47949	0	.	39659319	39659787	0	1	468	0
chr19	39663300	39663600	A549_Myers.69483	0	.	39663300	39663600	0	1	300	0
chr19	39685028	39689325	H1_polyA+.94400	0	.	39685028	39689325	0	1	4297	0
chr19	39685070	39689642	REMC_MyoepithelialBreast.74661	0	.	39685070	39689642	0	1	4572	0
chr19	39685075	39689268	REMC_BreastStem.41052	0	.	39685075	39689268	0	1	4193	0
chr19	39685232	39686063	T47D_Burge_Thompson.24219	0	.	39685232	39686063	0	1	831	0
chr19	39685235	39689225	MCF10A_Thompson.17625	0	.	39685235	39689225	0	1	3990	0
chr19	39685379	39685830	H9_polyA+.36750	0	.	39685379	39685830	0	1	451	0
chr19	39685384	39689486	REMC_LuminalBreast.80606	0	.	39685384	39689486	0	1	4102	0
chr19	39685438	39686216	MCF7_Burge_Thompson.26205	0	.	39685438	39686216	0	1	778	0
chr19	39685456	39686965	melanoma_Garraway_short_term_cultures.55433	0	.	39685456	39686965	0	1	1509	0
chr19	39685456	39686439	BT474_Burge_Thompson.28320	0	.	39685456	39686439	0	1	983	0
chr19	39685458	39689083	MIP101.56124	0	.	39685458	39689083	0	1	3625	0
chr19	39685575	39689201	prostate_normal.47937	0	.	39685575	39689201	0	1	3626	0
chr19	39685939	39687414	H9_polyA+.36751	0	.	39685939	39687414	0	1	1475	0
chr19	39686025	39687905	HepG2_Caltech_ENCODE.30264	0	.	39686025	39687905	0	1	1880	0
chr19	39686267	39687257	MCF7_Burge_Thompson.26206	0	.	39686267	39687257	0	1	990	0
chr19	39686498	39688641	BT474_Burge_Thompson.28321	0	.	39686498	39688641	0	1	2143	0
chr19	39686527	39687667	MDAMB231_Thompson.18181	0	.	39686527	39687667	0	1	1140	0
chr19	39686550	39687365	T47D_Burge_Thompson.24220	0	.	39686550	39687365	0	1	815	0
chr19	39686598	39687150	NEC_from_H9.61273	0	.	39686598	39687150	0	1	552	0
chr19	39686878	39689043	ZR751_Thompson.19895	0	.	39686878	39689043	0	1	2165	0
chr19	39686936	39687421	brain_AmbionMAQC.36276	0	.	39686936	39687421	0	1	485	0
chr19	39687182	39687548	adipose_Burge.32266	0	.	39687182	39687548	0	1	366	0
chr19	39687365	39689089	T47D_Burge_Thompson.24221	0	.	39687365	39689089	0	1	1724	0
chr19	39687455	39687938	A549_Myers.69486	0	.	39687455	39687938	0	1	483	0
chr19	39687652	39688808	H9_polyA+.36752	0	.	39687652	39688808	0	1	1156	0
chr19	39687919	39689224	melanoma_Garraway_short_term_cultures.55434	0	.	39687919	39689224	0	1	1305	0
chr19	39687973	39688897	brain_AmbionMAQC.36277	0	.	39687973	39688897	0	1	924	0
chr19	39688003	39689089	MCF7_Burge_Thompson.26207	0	.	39688003	39689089	0	1	1086	0
chr19	39689986	39695446	REMC_MyoepithelialBreast.74657	0	.	39689986	39695446	0	1	5460	0
chr19	39689988	39692478	REMC_BreastStem.41053	0	.	39689988	39692478	0	1	2490	0
chr19	39690285	39695044	REMC_LuminalBreast.80607	0	.	39690285	39695044	0	1	4759	0
chr19	39691112	39692133	melanoma_Garraway_short_term_cultures.55436	0	.	39691112	39692133	0	1	1021	0
chr19	39692545	39693505	REMC_BreastStem.41054	0	.	39692545	39693505	0	1	960	0
chr19	39692585	39692927	H1_polyA+.94402	0	.	39692585	39692927	0	1	342	0
chr19	39759477	39760436	Rinn_00026763	0	-	39759477	39760436	0	3	262,192,150	0,532,809
chr19	39759486	39760183	REMC_MyoepithelialBreast.74604	0	.	39759486	39760183	0	1	697	0
chr19	39759490	39760171	BT474_Burge_Thompson.28302	0	.	39759490	39760171	0	1	681	0
chr19	39759490	39760925	brain_AmbionMAQC.36279	0	-	39759490	39760925	0	3	195,191,638	0,520,797
chr19	39759496	39761710	prostate_normal.47954	0	.	39759496	39761710	0	1	2214	0
chr19	39759501	39760858	B_cells_Cheung.156696	0	-	39759501	39760858	0	2	700,571	0,786
chr19	39759550	39760193	T47D_Burge_Thompson.24222	0	.	39759550	39760193	0	1	643	0
chr19	39759775	39760197	liver_polyA+.107892	0	.	39759775	39760197	0	1	422	0
chr19	39760634	39763102	REMC_LuminalBreast.80609	0	.	39760634	39763102	0	1	2468	0
chr19	39762022	39762935	prostate_normal.47956	0	.	39762022	39762935	0	1	913	0
chr19	39762089	39762576	brain_AmbionMAQC.36281	0	.	39762089	39762576	0	1	487	0
chr19	39762244	39762931	B_Cells_Pritchard.2570973	0	+	39762244	39762931	0	1	687	0
chr19	39768268	39771165	REMC_MyoepithelialBreast.74606	0	.	39768268	39771165	0	1	2897	0
chr19	39769401	39769756	B_cells_Cheung.156700	0	.	39769401	39769756	0	1	355	0
chr19	39769636	39770666	REMC_BreastStem.41065	0	.	39769636	39770666	0	1	1030	0
chr19	39772796	39775089	H1_polyA+.94172	0	.	39772796	39775089	0	1	2293	0
chr19	39773661	39774595	B_Cells_Pritchard.2571011	0	+	39773661	39774595	0	1	934	0
chr19	39773787	39774884	BT474_Burge_Thompson.28303	0	.	39773787	39774884	0	1	1097	0
chr19	39774072	39774439	HeLa_polyA+_Chen.29578	0	.	39774072	39774439	0	1	367	0
chr19	39779114	39779427	B_Cells_Pritchard.2571029	0	-	39779114	39779427	0	1	313	0
chr19	39779156	39779604	REMC_LuminalBreast.80611	0	.	39779156	39779604	0	1	448	0
chr19	39779349	39779916	A549_Myers.69163	0	.	39779349	39779916	0	1	567	0
chr19	39780398	39782108	REMC_LuminalBreast.80612	0	.	39780398	39782108	0	1	1710	0
chr19	39780676	39781662	B_Cells_Pritchard.2571041	0	-	39780676	39781662	0	1	986	0
chr19	39780717	39781641	prostate_carcinoma.80225	0	.	39780717	39781641	0	1	924	0
chr19	39782165	39788715	REMC_LuminalBreast.80613	0	.	39782165	39788715	0	1	6550	0
chr19	39783145	39784498	REMC_MyoepithelialBreast.74613	0	.	39783145	39784498	0	1	1353	0
chr19	39783301	39784234	melanoma_Garraway_short_term_cultures.55442	0	.	39783301	39784234	0	1	933	0
chr19	39783382	39784104	B_cells_Cheung.156710	0	.	39783382	39784104	0	1	722	0
chr19	39789508	39794412	B_cells_Cheung.156716	0	.	39789508	39794412	0	1	4904	0
chr19	39789559	39794363	B_Cells_Pritchard.2571061	0	.	39789559	39794363	0	1	4804	0
chr19	39789578	39798544	REMC_LuminalBreast.80615	0	.	39789578	39798544	0	1	8966	0
chr19	39790655	39791839	prostate_carcinoma.80230	0	.	39790655	39791839	0	1	1184	0
chr19	39790693	39794131	H1_polyA+.94177	0	.	39790693	39794131	0	1	3438	0
chr19	39792505	39793205	REMC_MyoepithelialBreast.74618	0	.	39792505	39793205	0	1	700	0
chr19	39792582	39793864	melanoma_Garraway_short_term_cultures.55444	0	.	39792582	39793864	0	1	1282	0
chr19	39803382	39808109	H1_polyA+.94183	0	.	39803382	39808109	0	1	4727	0
chr19	39803386	39807590	REMC_LuminalBreast.80617	0	.	39803386	39807590	0	1	4204	0
chr19	39804377	39805354	melanoma_Garraway_short_term_cultures.55446	0	.	39804377	39805354	0	1	977	0
chr19	39804381	39805669	B_cells_Cheung.156723	0	.	39804381	39805669	0	1	1288	0
chr19	39804449	39805354	prostate_carcinoma.80232	0	.	39804449	39805354	0	1	905	0
chr19	39804455	39808081	B_Cells_Pritchard.2571095	0	.	39804455	39808081	0	1	3626	0
chr19	39804531	39805563	REMC_MyoepithelialBreast.74625	0	.	39804531	39805563	0	1	1032	0
chr19	39804615	39805354	HeLa_polyA+_Chen.29582	0	.	39804615	39805354	0	1	739	0
chr19	39809607	39809980	REMC_LuminalBreast.80619	0	.	39809607	39809980	0	1	373	0
chr19	39814614	39819721	prostate_carcinoma.80235	0	-	39814614	39819721	0	2	182,4384	0,723
chr19	39815307	39820138	prostate_carcinoma.80236	0	.	39815307	39820138	0	1	4831	0
chr19	39816410	39817837	REMC_MyoepithelialBreast.74627	0	.	39816410	39817837	0	1	1427	0
chr19	39817916	39819539	B_Cells_Pritchard.2571119	0	-	39817916	39819539	0	1	1623	0
chr19	39817960	39820253	pHIT000119728	0	-	39817960	39820253	0	4	531,53,108,34	0,860,1613,2259
chr19	39817983	39819373	REMC_MyoepithelialBreast.74628	0	.	39817983	39819373	0	1	1390	0
chr19	39818125	39819471	HeLa_polyA+_Chen.29586	0	.	39818125	39819471	0	1	1346	0
chr19	39825702	39826319	HeLa_polyA+_Chen.29590	0	.	39825702	39826319	0	1	617	0
chr19	39826572	39831190	B_cells_Cheung.156732	0	.	39826572	39831190	0	1	4618	0
chr19	39827009	39828264	H1_polyA+.94189	0	.	39827009	39828264	0	1	1255	0
chr19	39827610	39828216	liver_polyA+.107914	0	.	39827610	39828216	0	1	606	0
chr19	39827806	39830258	REMC_MyoepithelialBreast.74632	0	.	39827806	39830258	0	1	2452	0
chr19	39828122	39829590	HIT000340762	0	+	39828122	39829590	0	1	1468	0
chr19	39828124	39828644	H9_polyA+.36755	0	.	39828124	39828644	0	1	520	0
chr19	39828772	39829281	H1_polyA+.94190	0	.	39828772	39829281	0	1	509	0
chr19	39829977	39832185	B_Cells_Pritchard.2571155	0	+	39829977	39832185	0	2	484,419	0,1789
chr19	39829978	39832708	REMC_LuminalBreast.80651	0	.	39829978	39832708	0	1	2730	0
chr19	39830052	39831471	H1_polyA+.94191	0	.	39830052	39831471	0	1	1419	0
chr19	39841776	39842161	REMC_LuminalBreast.80655	0	.	39841776	39842161	0	1	385	0
chr19	39843737	39846515	REMC_LuminalBreast.80656	0	.	39843737	39846515	0	1	2778	0
chr19	39845582	39847969	B_Cells_Pritchard.2571203	0	.	39845582	39847969	0	1	2387	0
chr19	39847880	39848445	H1_polyA+.94197	0	.	39847880	39848445	0	1	565	0
chr19	39848841	39850501	B_Cells_Pritchard.2571207	0	.	39848841	39850501	0	1	1660	0
chr19	39848877	39849692	HeLa_polyA+_Chen.29593	0	.	39848877	39849692	0	1	815	0
chr19	39848880	39849268	A549_Myers.69168	0	.	39848880	39849268	0	1	388	0
chr19	39848887	39849460	BT474_Burge_Thompson.28325	0	.	39848887	39849460	0	1	573	0
chr19	39848908	39850523	prostate_carcinoma.80243	0	.	39848908	39850523	0	1	1615	0
chr19	39848921	39850796	B_cells_Cheung.156739	0	.	39848921	39850796	0	1	1875	0
chr19	39850948	39851320	B_cells_Cheung.156740	0	.	39850948	39851320	0	1	372	0
chr19	39857814	39858840	BT474_Burge_Thompson.28326	0	.	39857814	39858840	0	1	1026	0
chr19	39858272	39858809	MeWo_Garraway.29918	0	.	39858272	39858809	0	1	537	0
chr19	39858354	39858787	T47D_Burge_Thompson.24223	0	.	39858354	39858787	0	1	433	0
chr19	39858361	39858991	H9_polyA+.36756	0	.	39858361	39858991	0	1	630	0
chr19	39858361	39858780	K562.36569	0	.	39858361	39858780	0	1	419	0
chr19	39858837	39860326	HIT000491804	0	-	39858837	39860326	0	1	1489	0
chr19	39929311	39929909	B_Cells_Pritchard.2571375	0	.	39929311	39929909	0	1	598	0
chr19	39930304	39932537	prostate_carcinoma.80261	0	.	39930304	39932537	0	1	2233	0
chr19	39930323	39931409	REMC_LuminalBreast.80637	0	.	39930323	39931409	0	1	1086	0
chr19	39930719	39932113	H1_polyA+.94203	0	.	39930719	39932113	0	1	1394	0
chr19	39930731	39931831	REMC_MyoepithelialBreast.74668	0	.	39930731	39931831	0	1	1100	0
chr19	39963943	39965610	prostate_carcinoma.80268	0	.	39963943	39965610	0	1	1667	0
chr19	39985077	40008745	pHIT000119732	0	+	39985077	40008745	0	3	88,97,559	0,511,23109
chr19	39994577	40000314	MIP101.56138	0	.	39994577	40000314	0	1	5737	0
chr19	39995018	40000236	prostate_carcinoma.80272	0	.	39995018	40000236	0	1	5218	0
chr19	39995038	40000227	MCF7_Burge_Thompson.26226	0	.	39995038	40000227	0	1	5189	0
chr19	39995083	39997305	H9_polyA+.36777	0	.	39995083	39997305	0	1	2222	0
chr19	39995383	39997402	CD4_Plagnol_resting.51996	0	.	39995383	39997402	0	1	2019	0
chr19	39995383	39996650	REMC_LuminalBreast.80644	0	.	39995383	39996650	0	1	1267	0
chr19	39995507	39997184	NEC_from_H9.61308	0	.	39995507	39997184	0	1	1677	0
chr19	39995625	39996556	CD4_Plagnol_activated.53581	0	.	39995625	39996556	0	1	931	0
chr19	39997256	40000165	NEC_from_H9.61309	0	+	39997256	40000165	0	2	170,2441	0,468
chr19	39997508	40000235	CD4_Plagnol_resting.51994	0	.	39997508	40000235	0	1	2727	0
chr19	39998086	39999957	prostate_normal.47996	0	.	39998086	39999957	0	1	1871	0
chr19	39998431	39999789	K562.36579	0	.	39998431	39999789	0	1	1358	0
chr19	39998875	39999454	CD4_Snyder.59895	0	.	39998875	39999454	0	1	579	0
chr19	40021656	40022074	A549_Myers.69191	0	.	40021656	40022074	0	1	418	0
chr19	40031884	40034562	K562.36580	0	-	40031884	40034562	0	2	409,1150	0,1528
chr19	40032922	40033554	CD4_Plagnol_activated.53585	0	.	40032922	40033554	0	1	632	0
chr19	40034312	40034629	CD4_Snyder.59899	0	.	40034312	40034629	0	1	317	0
chr19	40034313	40034808	A549_Myers.69192	0	.	40034313	40034808	0	1	495	0
chr19	40049058	40049861	MCF7_Burge_Thompson.26228	0	.	40049058	40049861	0	1	803	0
chr19	40049082	40049818	prostate_normal.48001	0	.	40049082	40049818	0	1	736	0
chr19	40049092	40049873	XR_038711	0	+	40049092	40049873	0	1	781	0
chr19	40049299	40050023	B_Cells_Pritchard.2571735	0	.	40049299	40050023	0	1	724	0
chr19	40087536	40109565	H1_polyA+.94216	0	-	40087536	40109565	0	3	995,808,93	0,18239,21936
chr19	40087536	40089104	H1_polyA+.94217	0	.	40087536	40089104	0	1	1568	0
chr19	40087559	40087873	testes_Burge.43798	0	.	40087559	40087873	0	1	314	0
chr19	40087693	40088140	H9_polyA+.36781	0	.	40087693	40088140	0	1	447	0
chr19	40087779	40088903	prostate_carcinoma.80282	0	.	40087779	40088903	0	1	1124	0
chr19	40087859	40088606	A549_Myers.69196	0	.	40087859	40088606	0	1	747	0
chr19	40098422	40099454	H1_polyA+.94219	0	.	40098422	40099454	0	1	1032	0
chr19	40131068	40134760	H1_polyA+.94230	0	.	40131068	40134760	0	1	3692	0
chr19	40131169	40133514	B_Cells_Pritchard.2571929	0	.	40131169	40133514	0	1	2345	0
chr19	40131175	40134707	REMC_LuminalBreast.80662	0	.	40131175	40134707	0	1	3532	0
chr19	40131780	40133532	B_cells_Cheung.156797	0	.	40131780	40133532	0	1	1752	0
chr19	40131781	40133440	MIP101.56152	0	.	40131781	40133440	0	1	1659	0
chr19	40131794	40133616	prostate_carcinoma.80295	0	.	40131794	40133616	0	1	1822	0
chr19	40131959	40134367	HepG2_Caltech_ENCODE.30281	0	.	40131959	40134367	0	1	2408	0
chr19	40132179	40133504	melanoma_Garraway_short_term_cultures.55468	0	.	40132179	40133504	0	1	1325	0
chr19	40132384	40133112	CD4_Plagnol_activated.53588	0	.	40132384	40133112	0	1	728	0
chr19	40132839	40133432	CD4_Plagnol_resting.52012	0	.	40132839	40133432	0	1	593	0
chr19	40132840	40133581	prostate_normal.48009	0	.	40132840	40133581	0	1	741	0
chr19	40134758	40137452	REMC_LuminalBreast.80664	0	.	40134758	40137452	0	1	2694	0
chr19	40136589	40137511	B_cells_Cheung.156802	0	.	40136589	40137511	0	1	922	0
chr19	40136839	40137458	K562.36647	0	.	40136839	40137458	0	1	619	0
chr19	40210723	40211487	CD4_Plagnol_resting.52018	0	.	40210723	40211487	0	1	764	0
chr19	40210813	40211487	CD4_Plagnol_activated.53621	0	.	40210813	40211487	0	1	674	0
chr19	40291159	40292001	prostate_carcinoma.80361	0	.	40291159	40292001	0	1	842	0
chr19	40291323	40292026	brain_AmbionMAQC.36341	0	.	40291323	40292026	0	1	703	0
chr19	40292138	40292934	H1_polyA+.94255	0	.	40292138	40292934	0	1	796	0
chr19	40292273	40292955	prostate_carcinoma.80362	0	.	40292273	40292955	0	1	682	0
chr19	40292512	40292951	A549_Myers.69262	0	.	40292512	40292951	0	1	439	0
chr19	40295857	40296397	prostate_carcinoma.80363	0	.	40295857	40296397	0	1	540	0
chr19	40295960	40296400	HeLa_polyA+_Chen.29623	0	.	40295960	40296400	0	1	440	0
chr19	40353798	40355035	REMC_LuminalBreast.80684	0	.	40353798	40355035	0	1	1237	0
chr19	40354154	40354822	B_cells_Cheung.156831	0	.	40354154	40354822	0	1	668	0
chr19	40356013	40359678	REMC_LuminalBreast.80678	0	.	40356013	40359678	0	1	3665	0
chr19	40356929	40357585	CD4_Plagnol_resting.52035	0	.	40356929	40357585	0	1	656	0
chr19	40357119	40357909	REMC_BreastStem.41083	0	.	40357119	40357909	0	1	790	0
chr19	40360385	40361313	REMC_LuminalBreast.80680	0	.	40360385	40361313	0	1	928	0
chr19	40365176	40366381	REMC_LuminalBreast.80682	0	.	40365176	40366381	0	1	1205	0
chr19	40387897	40398614	Rinn_00027002	0	+	40387897	40398614	0	3	122,241,238	0,997,10479
chr19	40387897	40398614	Rinn_00027003	0	+	40387897	40398614	0	4	122,241,113,238	0,997,5717,10479
chr19	40394388	40395605	CD4_Snyder.59936	0	.	40394388	40395605	0	1	1217	0
chr19	40394776	40395510	CD4_Plagnol_resting.52037	0	.	40394776	40395510	0	1	734	0
chr19	40395042	40395613	CD4_Plagnol_activated.53614	0	.	40395042	40395613	0	1	571	0
chr19	40498290	40499004	brain_AmbionMAQC.36478	0	.	40498290	40499004	0	1	714	0
chr19	40498292	40498960	B_cells_Cheung.157931	0	.	40498292	40498960	0	1	668	0
chr19	40508454	40508861	B_cells_Cheung.157937	0	.	40508454	40508861	0	1	407	0
chr19	40531370	40532551	melanoma_Garraway_short_term_cultures.55541	0	.	40531370	40532551	0	1	1181	0
chr19	40531772	40532356	CD4_Plagnol_activated.53634	0	.	40531772	40532356	0	1	584	0
chr19	40532272	40532658	ovary_Raymond.199937	0	.	40532272	40532658	0	1	386	0
chr19	40532682	40533013	A549_Myers.69342	0	.	40532682	40533013	0	1	331	0
chr19	40544738	40545120	A549_Myers.69345	0	.	40544738	40545120	0	1	382	0
chr19	40546484	40546799	A549_Myers.69346	0	.	40546484	40546799	0	1	315	0
chr19	40564603	40565229	B_cells_Cheung.156873	0	.	40564603	40565229	0	1	626	0
chr19	40564685	40578983	B_Cells_Pritchard.2572995	0	-	40564685	40578983	0	3	452,78,8	0,1041,14290
chr19	40564869	40567050	H1_polyA+.94334	0	-	40564869	40567050	0	3	230,628,391	0,944,1790
chr19	40565708	40567050	H1_polyA+.94333	0	.	40565708	40567050	0	1	1342	0
chr19	40565714	40567081	B_cells_Cheung.156874	0	.	40565714	40567081	0	1	1367	0
chr19	40581131	40581614	A549_Myers.69354	0	.	40581131	40581614	0	1	483	0
chr19	40587760	40588148	B_cells_Cheung.156878	0	.	40587760	40588148	0	1	388	0
chr19	40588727	40589031	B_cells_Cheung.156880	0	.	40588727	40589031	0	1	304	0
chr19	40591578	40593374	MeWo_Garraway.29972	0	.	40591578	40593374	0	1	1796	0
chr19	40595047	40596844	B_cells_Cheung.156883	0	.	40595047	40596844	0	1	1797	0
chr19	40595110	40595784	MeI_Garraway.14561	0	.	40595110	40595784	0	1	674	0
chr19	40596065	40597477	melanoma_Garraway_short_term_cultures.55549	0	.	40596065	40597477	0	1	1412	0
chr19	40596916	40597552	B_cells_Cheung.156884	0	.	40596916	40597552	0	1	636	0
chr19	40603102	40603605	A549_Myers.69357	0	.	40603102	40603605	0	1	503	0
chr19	40604107	40604521	A549_Myers.69358	0	.	40604107	40604521	0	1	414	0
chr19	40606558	40617389	prostate_carcinoma.80395	0	-	40606558	40617389	0	6	33,82,693,2602,1181,1059	0,2541,3291,4923,8105,9772
chr19	40606621	40611435	prostate_carcinoma.80396	0	-	40606621	40611435	0	3	254,1038,189	0,1201,4625
chr19	40606736	40607790	B_cells_Cheung.156892	0	.	40606736	40607790	0	1	1054	0
chr19	40606803	40607394	ENST00000413796	0	-	40606803	40607394	0	2	389,61	0,530
chr19	40606917	40607567	prostate_normal.48116	0	.	40606917	40607567	0	1	650	0
chr19	40607866	40608390	B_cells_Cheung.156893	0	.	40607866	40608390	0	1	524	0
chr19	40613801	40614258	B_cells_Cheung.156897	0	.	40613801	40614258	0	1	457	0
chr19	40617151	40617480	A549_Myers.69360	0	.	40617151	40617480	0	1	329	0
chr19	40621098	40621973	B_cells_Cheung.156903	0	.	40621098	40621973	0	1	875	0
chr19	40622023	40622970	B_cells_Cheung.156904	0	.	40622023	40622970	0	1	947	0
chr19	40623497	40623917	B_cells_Cheung.156905	0	.	40623497	40623917	0	1	420	0
chr19	40643291	40643605	B_cells_Cheung.156913	0	.	40643291	40643605	0	1	314	0
chr19	40643668	40644224	B_cells_Cheung.156914	0	.	40643668	40644224	0	1	556	0
chr19	40759387	40760566	H1_polyA+.94455	0	.	40759387	40760566	0	1	1179	0
chr19	40759477	40759955	B_cells_Cheung.156937	0	.	40759477	40759955	0	1	478	0
chr19	40760941	40762173	H1_polyA+.94456	0	.	40760941	40762173	0	1	1232	0
chr19	40792466	40792866	A549_Myers.69412	0	.	40792466	40792866	0	1	400	0
chr19	40821461	40822386	CD4_Plagnol_resting.52119	0	.	40821461	40822386	0	1	925	0
chr19	40821467	40822328	CD4_Plagnol_activated.53657	0	.	40821467	40822328	0	1	861	0
chr19	40843566	40844469	B_cells_Cheung.156975	0	.	40843566	40844469	0	1	903	0
chr19	40843625	40844570	melanoma_Garraway_short_term_cultures.55572	0	.	40843625	40844570	0	1	945	0
chr19	40843636	40845230	REMC_MyoepithelialBreast.74712	0	.	40843636	40845230	0	1	1594	0
chr19	40843647	40844471	CD4_Plagnol_activated.53660	0	.	40843647	40844471	0	1	824	0
chr19	40843858	40844627	REMC_LuminalBreast.80710	0	.	40843858	40844627	0	1	769	0
chr19	40844015	40844469	B_Cells_Pritchard.2574195	0	+	40844015	40844469	0	1	454	0
chr19	40844065	40844488	MIP101.56199	0	.	40844065	40844488	0	1	423	0
chr19	40879801	40880145	B_cells_Cheung.156948	0	.	40879801	40880145	0	1	344	0
chr19	40885376	40885899	B_cells_Cheung.156953	0	.	40885376	40885899	0	1	523	0
chr19	40885408	40885842	B_Cells_Pritchard.2574099	0	-	40885408	40885842	0	1	434	0
chr19	40886006	40886538	B_cells_Cheung.156954	0	.	40886006	40886538	0	1	532	0
chr19	41180221	41180675	K562.36743	0	.	41180221	41180675	0	1	454	0
chr19	41180801	41182354	REMC_LuminalBreast.80730	0	.	41180801	41182354	0	1	1553	0
chr19	41181658	41183339	B_cells_Cheung.157021	0	.	41181658	41183339	0	1	1681	0
chr19	41181662	41182398	H1_polyA+.94441	0	.	41181662	41182398	0	1	736	0
chr19	41181692	41183239	BT474_Burge_Thompson.28411	0	.	41181692	41183239	0	1	1547	0
chr19	41181704	41182403	CD4_Plagnol_resting.52175	0	.	41181704	41182403	0	1	699	0
chr19	41181714	41182805	K562.36746	0	.	41181714	41182805	0	1	1091	0
chr19	41181724	41183020	brain_AmbionMAQC.36465	0	.	41181724	41183020	0	1	1296	0
chr19	41181739	41182364	REMC_MyoepithelialBreast.74758	0	.	41181739	41182364	0	1	625	0
chr19	41181892	41182232	A549_Myers.69581	0	.	41181892	41182232	0	1	340	0
chr19	41289573	41290041	A549_Myers.69615	0	.	41289573	41290041	0	1	468	0
chr19	41289626	41290025	HeLa_polyA+_Chen.29724	0	.	41289626	41290025	0	1	399	0
chr19	41289750	41290402	T47D_Burge_Thompson.24322	0	.	41289750	41290402	0	1	652	0
chr19	41290135	41293059	REMC_LuminalBreast.80746	0	.	41290135	41293059	0	1	2924	0
chr19	41290152	41290982	prostate_carcinoma.81310	0	.	41290152	41290982	0	1	830	0
chr19	41290311	41291291	MIP101.56749	0	.	41290311	41291291	0	1	980	0
chr19	41290608	41291420	B_cells_Cheung.157064	0	.	41290608	41291420	0	1	812	0
chr19	41310871	41314119	REMC_LuminalBreast.80756	0	.	41310871	41314119	0	1	3248	0
chr19	41316979	41319266	REMC_LuminalBreast.80759	0	.	41316979	41319266	0	1	2287	0
chr19	41319454	41320396	REMC_LuminalBreast.80751	0	.	41319454	41320396	0	1	942	0
chr19	41319472	41319987	prostate_carcinoma.81316	0	.	41319472	41319987	0	1	515	0
chr19	41319755	41320091	A549_Myers.69623	0	.	41319755	41320091	0	1	336	0
chr19	41339649	41340993	REMC_LuminalBreast.81054	0	.	41339649	41340993	0	1	1344	0
chr19	41339930	41340978	REMC_MyoepithelialBreast.74854	0	.	41339930	41340978	0	1	1048	0
chr19	41341156	41345741	REMC_LuminalBreast.81055	0	.	41341156	41345741	0	1	4585	0
chr19	41346169	41347011	B_cells_Cheung.157086	0	.	41346169	41347011	0	1	842	0
chr19	41347456	41354710	REMC_LuminalBreast.81058	0	.	41347456	41354710	0	1	7254	0
chr19	41347548	41349777	REMC_BreastStem.41316	0	.	41347548	41349777	0	1	2229	0
chr19	41347566	41352740	REMC_MyoepithelialBreast.74859	0	.	41347566	41352740	0	1	5174	0
chr19	41347751	41349949	B_cells_Cheung.157088	0	.	41347751	41349949	0	1	2198	0
chr19	41347890	41350621	B_Cells_Pritchard.2580537	0	+	41347890	41350621	0	2	663,476	0,2255
chr19	41348262	41349567	CD4_Plagnol_resting.52214	0	.	41348262	41349567	0	1	1305	0
chr19	41348401	41349172	melanoma_Garraway_short_term_cultures.55657	0	.	41348401	41349172	0	1	771	0
chr19	41348423	41349183	H1_polyA+.94475	0	.	41348423	41349183	0	1	760	0
chr19	41351109	41352685	REMC_BreastStem.41318	0	.	41351109	41352685	0	1	1576	0
chr19	41351673	41352581	B_cells_Cheung.157090	0	.	41351673	41352581	0	1	908	0
chr19	41352920	41354499	REMC_MyoepithelialBreast.74860	0	.	41352920	41354499	0	1	1579	0
chr19	41354018	41354449	H1_polyA+.94480	0	.	41354018	41354449	0	1	431	0
chr19	41354084	41354453	REMC_BreastStem.41319	0	.	41354084	41354453	0	1	369	0
chr19	41354737	41359237	REMC_MyoepithelialBreast.74861	0	.	41354737	41359237	0	1	4500	0
chr19	41354839	41359263	REMC_LuminalBreast.81059	0	.	41354839	41359263	0	1	4424	0
chr19	41354848	41359228	REMC_BreastStem.41320	0	.	41354848	41359228	0	1	4380	0
chr19	41359400	41361298	REMC_BreastStem.41321	0	.	41359400	41361298	0	1	1898	0
chr19	41359410	41361301	REMC_MyoepithelialBreast.74862	0	.	41359410	41361301	0	1	1891	0
chr19	42999832	43002776	prostate_normal.48452	0	+	42999832	43002776	0	3	349,121,73	0,2144,2871
chr19	42999837	43000975	prostate_carcinoma.80971	0	.	42999837	43000975	0	1	1138	0
chr19	42999890	43009118	HIT000428551	0	+	42999890	43009118	0	5	291,121,83,96,467	0,2086,2813,6400,8761
chr19	42999895	43002311	REMC_LuminalBreast.81060	0	+	42999895	43002311	0	2	311,335	0,2081
chr19	42999901	43006386	REMC_MyoepithelialBreast.75040	0	+	42999901	43006386	0	4	305,121,83,96	0,2075,2802,6389
chr19	42999908	43002868	H9_polyA+.37105	0	+	42999908	43002868	0	3	273,121,165	0,2068,2795
chr19	42999915	43002012	heart_Burge.24017	0	+	42999915	43002012	0	2	266,36	0,2061
chr19	43001855	43010507	prostate_carcinoma.80972	0	+	43001855	43010507	0	4	242,83,99,1856	0,848,4432,6796
chr19	43006207	43007812	T47D_Burge_Thompson.24464	0	-	43006207	43007812	0	2	990,264	0,1341
chr19	43006549	43007146	H9_polyA+.37108	0	.	43006549	43007146	0	1	597	0
chr19	43007111	43007976	prostate_normal.48455	0	.	43007111	43007976	0	1	865	0
chr19	43015549	43016367	brain_AmbionMAQC.36757	0	.	43015549	43016367	0	1	818	0
chr19	43415690	43416135	B_cells_Cheung.157953	0	.	43415690	43416135	0	1	445	0
chr19	43429177	43429888	brain_AmbionMAQC.36761	0	.	43429177	43429888	0	1	711	0
chr19	43442285	43442893	H1_polyA+.95369	0	.	43442285	43442893	0	1	608	0
chr19	43478477	43480172	REMC_LuminalBreast.81106	0	.	43478477	43480172	0	1	1695	0
chr19	43480505	43482327	REMC_LuminalBreast.81107	0	.	43480505	43482327	0	1	1822	0
chr19	43820613	43822550	B_cells_Cheung.158713	0	.	43820613	43822550	0	2	1022,524	0,1413
chr19	43821343	43823226	prostate_normal.48574	0	+	43821343	43823226	0	2	78,454	0,1429
chr19	43822075	43822550	brain_AmbionMAQC.36821	0	.	43822075	43822550	0	1	475	0
chr19	43822097	43822537	prostate_carcinoma.81146	0	.	43822097	43822537	0	1	440	0
chr19	43822770	43824004	REMC_LuminalBreast.81141	0	.	43822770	43824004	0	1	1234	0
chr19	43822774	43823324	B_cells_Cheung.158714	0	.	43822774	43823324	0	1	550	0
chr19	43822786	43823244	prostate_carcinoma.81147	0	.	43822786	43823244	0	1	458	0
chr19	43822793	43823322	H1_polyA+.94930	0	.	43822793	43823322	0	1	529	0
chr19	43822802	43823301	brain_AmbionMAQC.36822	0	.	43822802	43823301	0	1	499	0
chr19	43824313	43825163	B_cells_Cheung.158715	0	.	43824313	43825163	0	1	850	0
chr19	43827222	43827801	B_cells_Cheung.158719	0	.	43827222	43827801	0	1	579	0
chr19	43929596	43931434	REMC_MyoepithelialBreast.75084	0	.	43929596	43931434	0	1	1838	0
chr19	43929597	43931271	HepG2_Caltech_ENCODE.30586	0	.	43929597	43931271	0	1	1674	0
chr19	43932356	43933916	REMC_MyoepithelialBreast.75086	0	.	43932356	43933916	0	1	1560	0
chr19	43935195	43947205	REMC_LuminalBreast.81568	0	.	43935195	43947205	0	1	12010	0
chr19	43947369	43950104	REMC_LuminalBreast.81182	0	.	43947369	43950104	0	1	2735	0
chr19	43947756	43949483	REMC_MyoepithelialBreast.75098	0	.	43947756	43949483	0	1	1727	0
chr19	43957827	43959019	REMC_LuminalBreast.81184	0	.	43957827	43959019	0	1	1192	0
chr19	43964727	43965366	REMC_LuminalBreast.81188	0	.	43964727	43965366	0	1	639	0
chr19	43969024	43969944	REMC_LuminalBreast.81192	0	.	43969024	43969944	0	1	920	0
chr19	43977186	43977929	REMC_LuminalBreast.81197	0	.	43977186	43977929	0	1	743	0
chr19	44094448	44096017	brain_AmbionMAQC.36853	0	.	44094448	44096017	0	1	1569	0
chr19	44095086	44095938	BT20_Thompson.18200	0	.	44095086	44095938	0	1	852	0
chr19	44096255	44096680	prostate_normal.48768	0	.	44096255	44096680	0	1	425	0
chr19	44096278	44096738	HeLa_polyA+_Chen.29863	0	.	44096278	44096738	0	1	460	0
chr19	44163499	44163894	A549_Myers.70256	0	.	44163499	44163894	0	1	395	0
chr19	44171227	44172071	A549_Myers.70257	0	+	44171227	44172071	0	2	45,306	0,538
chr19	44185238	44185714	H1_polyA+.95034	0	.	44185238	44185714	0	1	476	0
chr19	44186349	44190215	H1_polyA+.95036	0	.	44186349	44190215	0	1	3866	0
chr19	44188903	44189827	brain_AmbionMAQC.36866	0	.	44188903	44189827	0	1	924	0
chr19	44188954	44190231	B_cells_Cheung.158139	0	.	44188954	44190231	0	1	1277	0
chr19	44190357	44194393	H1_polyA+.95038	0	.	44190357	44194393	0	1	4036	0
chr19	44191462	44193827	REMC_LuminalBreast.81344	0	.	44191462	44193827	0	1	2365	0
chr19	44191560	44194392	T47D_Burge_Thompson.24545	0	.	44191560	44194392	0	1	2832	0
chr19	44192494	44194393	B_cells_Cheung.158143	0	.	44192494	44194393	0	1	1899	0
chr19	44192641	44194278	MCF7_Burge_Thompson.26524	0	.	44192641	44194278	0	1	1637	0
chr19	44192705	44194091	brain_AmbionMAQC.36870	0	.	44192705	44194091	0	1	1386	0
chr19	44196438	44197030	Rinn_00027754	0	-	44196438	44197030	0	2	304,165	0,427
chr19	44196443	44197150	REMC_LuminalBreast.81346	0	.	44196443	44197150	0	1	707	0
chr19	44197641	44199438	B_cells_Cheung.158148	0	.	44197641	44199438	0	1	1797	0
chr19	44198576	44198911	prostate_carcinoma.81126	0	.	44198576	44198911	0	1	335	0
chr19	44202419	44204176	H1_polyA+.95045	0	.	44202419	44204176	0	1	1757	0
chr19	44203271	44203954	B_cells_Cheung.158149	0	.	44203271	44203954	0	1	683	0
chr19	44233714	44234026	brain_AmbionMAQC.36872	0	.	44233714	44234026	0	1	312	0
chr19	44235697	44236618	A549_Myers.70272	0	.	44235697	44236618	0	1	921	0
chr19	44239832	44266548	MDAMB468_Thompson.20258	0	-	44239832	44266548	0	2	284,261	0,26455
chr19	44239884	44240783	H1_polyA+.95048	0	.	44239884	44240783	0	1	899	0
chr19	44240356	44240789	A549_Myers.70274	0	.	44240356	44240789	0	1	433	0
chr19	44240539	44240895	B_Cells_Pritchard.2581075	0	.	44240539	44240895	0	1	356	0
chr19	44252861	44254063	H1_polyA+.95054	0	.	44252861	44254063	0	1	1202	0
chr19	44252974	44254266	brain_AmbionMAQC.36899	0	.	44252974	44254266	0	1	1292	0
chr19	44254915	44255318	brain_AmbionMAQC.36900	0	.	44254915	44255318	0	1	403	0
chr19	44254915	44255457	H1_polyA+.95055	0	.	44254915	44255457	0	1	542	0
chr19	44256021	44257106	H1_polyA+.95056	0	.	44256021	44257106	0	1	1085	0
chr19	44295557	44296423	brain_AmbionMAQC.36894	0	.	44295557	44296423	0	1	866	0
chr19	44295570	44295993	H1_polyA+.95067	0	.	44295570	44295993	0	1	423	0
chr19	44295600	44296423	BT20_Thompson.18214	0	.	44295600	44296423	0	1	823	0
chr19	44295630	44296368	melanoma_Garraway_short_term_cultures.56196	0	.	44295630	44296368	0	1	738	0
chr19	44295669	44296216	MDAMB468_Thompson.20257	0	.	44295669	44296216	0	1	547	0
chr19	44296696	44297265	BT20_Thompson.18215	0	.	44296696	44297265	0	1	569	0
chr19	44297583	44298514	brain_AmbionMAQC.36896	0	.	44297583	44298514	0	1	931	0
chr19	44363069	44364384	B_cells_Cheung.158170	0	.	44363069	44364384	0	1	1315	0
chr19	44363073	44364281	H1_polyA+.95070	0	.	44363073	44364281	0	1	1208	0
chr19	44363116	44368044	A549_Myers.70328	0	-	44363116	44368044	0	2	56,574	0,4354
chr19	44363241	44365034	BT20_Thompson.18218	0	.	44363241	44365034	0	1	1793	0
chr19	44363589	44365059	BT474_Burge_Thompson.28780	0	.	44363589	44365059	0	1	1470	0
chr19	44363700	44364344	CD4_Plagnol_activated.54279	0	.	44363700	44364344	0	1	644	0
chr19	44363703	44365030	A549_Myers.70330	0	.	44363703	44365030	0	1	1327	0
chr19	44363775	44364218	B_Cells_Pritchard.2581357	0	.	44363775	44364218	0	1	443	0
chr19	44364190	44365002	prostate_normal.48627	0	.	44364190	44365002	0	1	812	0
chr19	44365041	44367311	REMC_MyoepithelialBreast.75137	0	.	44365041	44367311	0	1	2270	0
chr19	44367389	44368052	H1_polyA+.95073	0	.	44367389	44368052	0	1	663	0
chr19	44367397	44368126	REMC_MyoepithelialBreast.75138	0	.	44367397	44368126	0	1	729	0
chr19	44367430	44368079	MIP101.56694	0	.	44367430	44368079	0	1	649	0
chr19	44367473	44368209	BT474_Burge_Thompson.28781	0	.	44367473	44368209	0	1	736	0
chr19	44369611	44374629	REMC_LuminalBreast.81361	0	.	44369611	44374629	0	1	5018	0
chr19	44369643	44370020	REMC_MyoepithelialBreast.75140	0	.	44369643	44370020	0	1	377	0
chr19	44369667	44370935	BT20_Thompson.18219	0	.	44369667	44370935	0	1	1268	0
chr19	44369706	44370900	BT474_Burge_Thompson.28782	0	.	44369706	44370900	0	1	1194	0
chr19	44369787	44370623	MIP101.56696	0	.	44369787	44370623	0	1	836	0
chr19	44369798	44370637	prostate_normal.48604	0	.	44369798	44370637	0	1	839	0
chr19	44371249	44371576	prostate_normal.48605	0	.	44371249	44371576	0	1	327	0
chr19	44374741	44376984	REMC_LuminalBreast.81362	0	.	44374741	44376984	0	1	2243	0
chr19	44376304	44376634	A549_Myers.70338	0	.	44376304	44376634	0	1	330	0
chr19	44377149	44378081	REMC_LuminalBreast.81363	0	.	44377149	44378081	0	1	932	0
chr19	44388603	44389952	REMC_LuminalBreast.81367	0	.	44388603	44389952	0	1	1349	0
chr19	44393285	44395353	REMC_LuminalBreast.81370	0	.	44393285	44395353	0	1	2068	0
chr19	44395593	44401449	REMC_LuminalBreast.81371	0	.	44395593	44401449	0	1	5856	0
chr19	44402198	44402815	BT474_Burge_Thompson.28789	0	.	44402198	44402815	0	1	617	0
chr19	44402231	44402855	B_Cells_Pritchard.2581487	0	.	44402231	44402855	0	1	624	0
chr19	44402274	44403081	REMC_LuminalBreast.81372	0	.	44402274	44403081	0	1	807	0
chr19	44403181	44404269	REMC_LuminalBreast.81373	0	.	44403181	44404269	0	1	1088	0
chr19	44404462	44409100	REMC_LuminalBreast.81374	0	.	44404462	44409100	0	1	4638	0
chr19	44409174	44409652	REMC_LuminalBreast.81375	0	.	44409174	44409652	0	1	478	0
chr19	44412648	44413740	REMC_LuminalBreast.81378	0	.	44412648	44413740	0	1	1092	0
chr19	44414850	44416548	REMC_LuminalBreast.81379	0	.	44414850	44416548	0	1	1698	0
chr19	44417672	44418664	REMC_LuminalBreast.81381	0	.	44417672	44418664	0	1	992	0
chr19	44419889	44420502	MIP101.56701	0	.	44419889	44420502	0	1	613	0
chr19	44419964	44420574	A549_Myers.70355	0	.	44419964	44420574	0	1	610	0
chr19	44420073	44420435	B_cells_Cheung.158180	0	.	44420073	44420435	0	1	362	0
chr19	44429612	44431059	pHIT000094340	0	-	44429612	44431059	0	6	99,261,144,72,87,54	0,256,575,791,1296,1393
chr19	44430786	44432459	H1_polyA+.95075	0	.	44430786	44432459	0	1	1673	0
chr19	44430794	44431095	A549_Myers.70358	0	.	44430794	44431095	0	1	301	0
chr19	44444880	44445707	H1_polyA+.95078	0	.	44444880	44445707	0	1	827	0
chr19	44445954	44447240	H1_polyA+.95079	0	.	44445954	44447240	0	1	1286	0
chr19	44446629	44447164	A549_Myers.70362	0	.	44446629	44447164	0	1	535	0
chr19	44446861	44448297	pHIT000033385	0	+	44446861	44448297	0	4	126,153,66,99	0,718,929,1337
chr19	44486100	44486405	CD4_Plagnol_resting.52734	0	.	44486100	44486405	0	1	305	0
chr19	44487188	44488097	A549_Myers.70369	0	.	44487188	44488097	0	1	909	0
chr19	44503525	44504696	CD4_Plagnol_activated.54287	0	.	44503525	44504696	0	1	1171	0
chr19	44503654	44504147	prostate_carcinoma.82972	0	.	44503654	44504147	0	1	493	0
chr19	44503687	44504755	CD4_Plagnol_resting.52741	0	.	44503687	44504755	0	1	1068	0
chr19	44505213	44506110	B_Cells_Pritchard.2581807	0	-	44505213	44506110	0	1	897	0
chr19	44506575	44506951	B_Cells_Pritchard.2581815	0	-	44506575	44506951	0	1	376	0
chr19	44506594	44507255	CD4_Plagnol_activated.55494	0	.	44506594	44507255	0	1	661	0
chr19	44508183	44509301	CD4_Plagnol_activated.55496	0	.	44508183	44509301	0	1	1118	0
chr19	44508796	44509204	A549_Myers.70374	0	.	44508796	44509204	0	1	408	0
chr19	44522169	44522717	B_cells_Cheung.158202	0	.	44522169	44522717	0	1	548	0
chr19	44593507	44594554	A549_Myers.70716	0	.	44593507	44594554	0	1	1047	0
chr19	44612723	44614088	REMC_BreastStem.41377	0	.	44612723	44614088	0	1	1365	0
chr19	44612870	44613895	melanoma_Garraway_short_term_cultures.56256	0	.	44612870	44613895	0	1	1025	0
chr19	44612988	44614041	B_Cells_Pritchard.2594855	0	-	44612988	44614041	0	1	1053	0
chr19	44716862	44717767	REMC_MyoepithelialBreast.75273	0	.	44716862	44717767	0	1	905	0
chr19	44717871	44719585	H1_polyA+.95112	0	.	44717871	44719585	0	1	1714	0
chr19	44874896	44877135	prostate_carcinoma.81212	0	-	44874896	44877135	0	2	2042,89	0,2150
chr19	44875312	44877555	prostate_carcinoma.81210	0	.	44875312	44877555	0	1	2243	0
chr19	45299940	45308956	B_Cells_Pritchard.2583593	0	+	45299940	45308956	0	3	931,169,1498	0,3819,7518
chr19	45309380	45311329	B_Cells_Pritchard.2583615	0	+	45309380	45311329	0	1	1949	0
chr19	45310187	45311323	B_cells_Cheung.158387	0	.	45310187	45311323	0	1	1136	0
chr19	45340033	45340462	B_cells_Cheung.158400	0	.	45340033	45340462	0	1	429	0
chr19	45384645	45385110	B_cells_Cheung.158406	0	.	45384645	45385110	0	1	465	0
chr19	45488047	45489084	B_cells_Cheung.158446	0	.	45488047	45489084	0	1	1037	0
chr19	45489443	45490896	REMC_LuminalBreast.81473	0	.	45489443	45490896	0	1	1453	0
chr19	45499863	45500852	H1_polyA+.95193	0	.	45499863	45500852	0	1	989	0
chr19	45499863	45500453	HeLa_polyA+_Chen.29990	0	.	45499863	45500453	0	1	590	0
chr19	45499865	45500863	B_cells_Cheung.158462	0	.	45499865	45500863	0	1	998	0
chr19	45500104	45500842	K562.37222	0	.	45500104	45500842	0	1	738	0
chr19	45500116	45500806	REMC_LuminalBreast.81476	0	.	45500116	45500806	0	1	690	0
chr19	45500444	45500836	MIP101.56990	0	.	45500444	45500836	0	1	392	0
chr19	45501165	45503856	REMC_LuminalBreast.81477	0	.	45501165	45503856	0	1	2691	0
chr19	45501459	45503864	B_cells_Cheung.158451	0	.	45501459	45503864	0	1	2405	0
chr19	45501517	45502815	K562.37223	0	.	45501517	45502815	0	1	1298	0
chr19	45501547	45503894	H1_polyA+.95194	0	.	45501547	45503894	0	1	2347	0
chr19	45504843	45505649	HeLa_polyA+_Chen.29993	0	.	45504843	45505649	0	1	806	0
chr19	45504862	45505624	B_cells_Cheung.158465	0	.	45504862	45505624	0	1	762	0
chr19	45504940	45505961	H1_polyA+.95196	0	.	45504940	45505961	0	1	1021	0
chr19	45505033	45505556	MeWo_Garraway.30362	0	.	45505033	45505556	0	1	523	0
chr19	45509668	45510092	B_cells_Cheung.158471	0	.	45509668	45510092	0	1	424	0
chr19	45612382	45613101	A549_Myers.70583	0	.	45612382	45613101	0	1	719	0
chr19	45616857	45617803	B_Cells_Pritchard.2584195	0	+	45616857	45617803	0	1	946	0
chr19	45617054	45617365	A549_Myers.70587	0	.	45617054	45617365	0	1	311	0
chr19	45617426	45617739	A549_Myers.70588	0	.	45617426	45617739	0	1	313	0
chr19	45618527	45619115	BT474_Burge_Thompson.28921	0	.	45618527	45619115	0	1	588	0
chr19	45630021	45631560	REMC_LuminalBreast.81496	0	.	45630021	45631560	0	1	1539	0
chr19	45630162	45631566	H1_polyA+.95396	0	.	45630162	45631566	0	1	1404	0
chr19	45630339	45631591	B_cells_Cheung.158521	0	.	45630339	45631591	0	1	1252	0
chr19	45630683	45631367	REMC_MyoepithelialBreast.75346	0	.	45630683	45631367	0	1	684	0
chr19	45630893	45632210	B_Cells_Pritchard.2584253	0	+	45630893	45632210	0	1	1317	0
chr19	45631203	45632190	A549_Myers.70595	0	.	45631203	45632190	0	1	987	0
chr19	45631732	45632609	REMC_LuminalBreast.81497	0	.	45631732	45632609	0	1	877	0
chr19	45831619	45832098	A549_Myers.70647	0	.	45831619	45832098	0	1	479	0
chr19	45832152	45832567	A549_Myers.70648	0	.	45832152	45832567	0	1	415	0
chr19	45838427	45838818	A549_Myers.70650	0	.	45838427	45838818	0	1	391	0
chr19	45855038	45858004	REMC_LuminalBreast.81509	0	.	45855038	45858004	0	1	2966	0
chr19	45855753	45857378	REMC_MyoepithelialBreast.75364	0	.	45855753	45857378	0	1	1625	0
chr19	45859158	45860732	REMC_LuminalBreast.81511	0	.	45859158	45860732	0	1	1574	0
chr19	45860178	45860531	B_cells_Cheung.158585	0	.	45860178	45860531	0	1	353	0
chr19	45860614	45861970	A549_Myers.70651	0	.	45860614	45861970	0	1	1356	0
chr19	45860863	45861849	REMC_MyoepithelialBreast.75365	0	.	45860863	45861849	0	1	986	0
chr19	45861273	45861943	melanoma_Garraway_short_term_cultures.56406	0	.	45861273	45861943	0	1	670	0
chr19	45964901	45965473	CD4_Plagnol_resting.52883	0	.	45964901	45965473	0	1	572	0
chr19	45966293	45967485	B_cells_Cheung.158780	0	.	45966293	45967485	0	1	1192	0
chr19	45966466	45967473	CD4_Plagnol_activated.54416	0	.	45966466	45967473	0	1	1007	0
chr19	45966964	45967430	CD4_Plagnol_resting.52885	0	.	45966964	45967430	0	1	466	0
chr19	46010442	46011298	B_cells_Cheung.158655	0	.	46010442	46011298	0	1	856	0
chr19	46010706	46011059	melanoma_Garraway_short_term_cultures.56450	0	.	46010706	46011059	0	1	353	0
chr19	46011354	46013802	HIT000045303	0	+	46011354	46013802	0	1	2448	0
chr19	46011516	46012525	melanoma_Garraway_short_term_cultures.56451	0	.	46011516	46012525	0	1	1009	0
chr19	46011587	46011991	CD4_Plagnol_activated.54435	0	.	46011587	46011991	0	1	404	0
chr19	46011636	46012014	BT474_Burge_Thompson.29150	0	.	46011636	46012014	0	1	378	0
chr19	46012645	46013492	REMC_MyoepithelialBreast.75391	0	.	46012645	46013492	0	1	847	0
chr19	46012828	46013548	B_cells_Cheung.158658	0	.	46012828	46013548	0	1	720	0
chr19	46012835	46013513	melanoma_Garraway_short_term_cultures.56452	0	.	46012835	46013513	0	1	678	0
chr19	46012857	46013228	BT474_Burge_Thompson.29152	0	.	46012857	46013228	0	1	371	0
chr19	46014362	46015935	REMC_MyoepithelialBreast.75393	0	.	46014362	46015935	0	1	1573	0
chr19	46523887	46524409	liver_polyA+.109191	0	.	46523887	46524409	0	1	522	0
chr19	46523926	46524287	HeLa_polyA+_Chen.30071	0	.	46523926	46524287	0	1	361	0
chr19	46524623	46527322	REMC_BreastStem.41571	0	.	46524623	46527322	0	1	2699	0
chr19	46524629	46527262	CD4_Plagnol_activated.55689	0	.	46524629	46527262	0	1	2633	0
chr19	46524634	46527225	melanoma_Garraway_short_term_cultures.56506	0	.	46524634	46527225	0	1	2591	0
chr19	46524634	46525326	MIP101.57082	0	.	46524634	46525326	0	1	692	0
chr19	46524635	46527264	CD4_Plagnol_resting.53781	0	.	46524635	46527264	0	1	2629	0
chr19	46524667	46525082	liver_polyA+.109192	0	.	46524667	46525082	0	1	415	0
chr19	46524668	46525285	prostate_normal.49101	0	.	46524668	46525285	0	1	617	0
chr19	46524685	46525322	HeLa_polyA+_Chen.30072	0	.	46524685	46525322	0	1	637	0
chr19	46524742	46526575	BT20_Thompson.18361	0	.	46524742	46526575	0	1	1833	0
chr19	46525461	46527050	H1_polyA+.95639	0	.	46525461	46527050	0	1	1589	0
chr19	46525522	46526079	liver_polyA+.109193	0	.	46525522	46526079	0	1	557	0
chr19	46525551	46525865	CD4_Snyder.60479	0	.	46525551	46525865	0	1	314	0
chr19	46525625	46526291	MDAMB468_Thompson.20408	0	.	46525625	46526291	0	1	666	0
chr19	46525747	46526246	K562.37342	0	.	46525747	46526246	0	1	499	0
chr19	46525838	46526618	MCF7_Burge_Thompson.26763	0	.	46525838	46526618	0	1	780	0
chr19	46525857	46526802	HeLa_polyA+_Chen.30074	0	.	46525857	46526802	0	1	945	0
chr19	46526149	46527061	CD4_Snyder.60481	0	.	46526149	46527061	0	1	912	0
chr19	46526297	46527036	K562.37343	0	.	46526297	46527036	0	1	739	0
chr19	46526431	46527063	liver_polyA+.109194	0	.	46526431	46527063	0	1	632	0
chr19	46692297	46693177	prostate_normal.48845	0	.	46692297	46693177	0	1	880	0
chr19	46698379	46699105	ZR751_Thompson.20259	0	-	46698379	46699105	0	2	158,464	0,262
chr19	46698660	46699003	MCF7_Burge_Thompson.26740	0	.	46698660	46699003	0	1	343	0
chr19	46698680	46698994	A549_Myers.70769	0	.	46698680	46698994	0	1	314	0
chr19	46714516	46716974	B_cells_Cheung.158736	0	.	46714516	46716974	0	1	2458	0
chr19	46714524	46715321	REMC_BreastStem.41506	0	.	46714524	46715321	0	1	797	0
chr19	46714610	46716386	REMC_LuminalBreast.81574	0	.	46714610	46716386	0	1	1776	0
chr19	46716457	46718448	REMC_LuminalBreast.81575	0	.	46716457	46718448	0	1	1991	0
chr19	46717232	46718507	B_cells_Cheung.158737	0	.	46717232	46718507	0	1	1275	0
chr19	46717426	46718279	REMC_MyoepithelialBreast.75433	0	.	46717426	46718279	0	1	853	0
chr19	46724660	46726572	REMC_MyoepithelialBreast.75435	0	.	46724660	46726572	0	1	1912	0
chr19	46726340	46729890	BT474_Burge_Thompson.29024	0	.	46726340	46729890	0	1	3550	0
chr19	46726635	46730791	REMC_MyoepithelialBreast.75437	0	.	46726635	46730791	0	1	4156	0
chr19	46726727	46730305	REMC_BreastStem.41512	0	.	46726727	46730305	0	1	3578	0
chr19	46726763	46732032	prostate_carcinoma.81660	0	.	46726763	46732032	0	1	5269	0
chr19	46726768	46728856	BT20_Thompson.18359	0	.	46726768	46728856	0	1	2088	0
chr19	46726884	46729790	CD4_Snyder.60534	0	.	46726884	46729790	0	1	2906	0
chr19	46728984	46729751	K562.37280	0	.	46728984	46729751	0	1	767	0
chr19	46729024	46729737	T47D_Burge_Thompson.24730	0	.	46729024	46729737	0	1	713	0
chr19	47071362	47072010	melanoma_Garraway_short_term_cultures.56566	0	.	47071362	47072010	0	1	648	0
chr19	47104477	47104837	lymph_node_Burge.43516	0	.	47104477	47104837	0	1	360	0
chr19	47106117	47107290	H1_polyA+.95581	0	.	47106117	47107290	0	1	1173	0
chr19	47106179	47106612	prostate_carcinoma.81757	0	.	47106179	47106612	0	1	433	0
chr19	47106188	47106999	melanoma_Garraway_short_term_cultures.56573	0	.	47106188	47106999	0	1	811	0
chr19	47106205	47107071	MIP101.57014	0	.	47106205	47107071	0	1	866	0
chr19	47106595	47110533	A549_Myers.70827	0	.	47106595	47110533	0	1	3938	0
chr19	47106892	47115193	lung_Raymond.72340	0	+	47106892	47115193	0	2	122,528	0,7773
chr19	47107125	47108339	melanoma_Garraway_short_term_cultures.56574	0	.	47107125	47108339	0	1	1214	0
chr19	47107228	47108171	MIP101.57015	0	.	47107228	47108171	0	1	943	0
chr19	47107507	47108341	H1_polyA+.95582	0	.	47107507	47108341	0	1	834	0
chr19	47108668	47109236	prostate_carcinoma.81758	0	.	47108668	47109236	0	1	568	0
chr19	47108722	47109250	MCF7_Burge_Thompson.26790	0	.	47108722	47109250	0	1	528	0
chr19	47108764	47109316	BT474_Burge_Thompson.29087	0	.	47108764	47109316	0	1	552	0
chr19	47109572	47110647	melanoma_Garraway_short_term_cultures.56575	0	.	47109572	47110647	0	1	1075	0
chr19	47109812	47110561	brain_AmbionMAQC.41532	0	.	47109812	47110561	0	1	749	0
chr19	47109969	47110474	MCF7_Burge_Thompson.26791	0	.	47109969	47110474	0	1	505	0
chr19	47110179	47110553	prostate_normal.48886	0	.	47110179	47110553	0	1	374	0
chr19	47111158	47111758	prostate_carcinoma.81759	0	.	47111158	47111758	0	1	600	0
chr19	47111163	47113254	brain_AmbionMAQC.41533	0	.	47111163	47113254	0	1	2091	0
chr19	47111178	47113342	A549_Myers.70828	0	.	47111178	47113342	0	1	2164	0
chr19	47111185	47111752	prostate_normal.48887	0	.	47111185	47111752	0	1	567	0
chr19	47111809	47112758	HepG2_Caltech_ENCODE.30821	0	.	47111809	47112758	0	1	949	0
chr19	47111986	47113267	MIP101.57016	0	.	47111986	47113267	0	1	1281	0
chr19	47112001	47112662	MDAMB231_Thompson.18478	0	.	47112001	47112662	0	1	661	0
chr19	47112032	47112508	MCF7_Burge_Thompson.26792	0	.	47112032	47112508	0	1	476	0
chr19	47112103	47113156	melanoma_Garraway_short_term_cultures.56576	0	.	47112103	47113156	0	1	1053	0
chr19	47114250	47114721	BT474_Burge_Thompson.29088	0	.	47114250	47114721	0	1	471	0
chr19	47114658	47115294	MCF7_Burge_Thompson.26789	0	.	47114658	47115294	0	1	636	0
chr19	47440180	47440957	prostate_carcinoma.81832	0	.	47440180	47440957	0	1	777	0
chr19	47463778	47464587	B_Cells_Pritchard.2588383	0	.	47463778	47464587	0	1	809	0
chr19	47465266	47466320	CD4_Plagnol_resting.53082	0	.	47465266	47466320	0	1	1054	0
chr19	48527435	48527994	HeLa_polyA+_Chen.30180	0	.	48527435	48527994	0	1	559	0
chr19	48531042	48535066	REMC_MyoepithelialBreast.75760	0	.	48531042	48535066	0	1	4024	0
chr19	48536827	48537565	REMC_MyoepithelialBreast.75762	0	.	48536827	48537565	0	1	738	0
chr19	48539189	48539795	REMC_MyoepithelialBreast.75765	0	.	48539189	48539795	0	1	606	0
chr19	48545959	48546508	H1_polyA+.95742	0	.	48545959	48546508	0	1	549	0
chr19	48837202	48838221	prostate_carcinoma.82187	0	.	48837202	48838221	0	1	1019	0
chr19	48837228	48838124	REMC_LuminalBreast.82059	0	.	48837228	48838124	0	1	896	0
chr19	48839349	48839789	H1_polyA+.95756	0	.	48839349	48839789	0	1	440	0
chr19	48839486	48839801	melanoma_Garraway_short_term_cultures.56742	0	.	48839486	48839801	0	1	315	0
chr19	48868985	48871531	REMC_MyoepithelialBreast.75823	0	.	48868985	48871531	0	1	2546	0
chr19	48869716	48872068	REMC_LuminalBreast.82061	0	.	48869716	48872068	0	1	2352	0
chr19	48870710	48871451	REMC_BreastStem.41639	0	.	48870710	48871451	0	1	741	0
chr19	48871277	48871739	HeLa_polyA+_Chen.30199	0	.	48871277	48871739	0	1	462	0
chr19	48871278	48871723	A549_Myers.71095	0	.	48871278	48871723	0	1	445	0
chr19	48871827	48872383	A549_Myers.71096	0	.	48871827	48872383	0	1	556	0
chr19	48872750	48873511	REMC_LuminalBreast.82062	0	.	48872750	48873511	0	1	761	0
chr19	48890674	48891243	A549_Myers.71101	0	.	48890674	48891243	0	1	569	0
chr19	48918559	48920267	REMC_MyoepithelialBreast.75827	0	.	48918559	48920267	0	1	1708	0
chr19	48918845	48919390	B_cells_Cheung.159094	0	.	48918845	48919390	0	1	545	0
chr19	48920827	48922655	B_cells_Cheung.159097	0	.	48920827	48922655	0	1	1828	0
chr19	48921044	48922165	REMC_LuminalBreast.81796	0	.	48921044	48922165	0	1	1121	0
chr19	48923646	48925426	pHIT000033797	0	+	48923646	48925426	0	2	96,333	0,1447
chr19	48924427	48925655	BT20_Thompson.18416	0	.	48924427	48925655	0	1	1228	0
chr19	48924478	48925590	MCF7_Burge_Thompson.26850	0	.	48924478	48925590	0	1	1112	0
chr19	48924687	48925075	MIP101.57111	0	.	48924687	48925075	0	1	388	0
chr19	48953209	48954658	B_cells_Cheung.159102	0	.	48953209	48954658	0	1	1449	0
chr19	48958748	48960305	melanoma_Garraway_short_term_cultures.56765	0	.	48958748	48960305	0	1	1557	0
chr19	48958805	48959234	B_cells_Cheung.159106	0	.	48958805	48959234	0	1	429	0
chr19	48958827	48959802	REMC_MyoepithelialBreast.75838	0	.	48958827	48959802	0	1	975	0
chr19	48959320	48960337	B_cells_Cheung.159107	0	.	48959320	48960337	0	1	1017	0
chr19	48959474	48960331	prostate_normal.49016	0	.	48959474	48960331	0	1	857	0
chr19	49782702	49783813	REMC_LuminalBreast.81935	0	.	49782702	49783813	0	1	1111	0
chr19	49791771	49792125	A549_Myers.71244	0	.	49791771	49792125	0	1	354	0
chr19	49794750	49795940	REMC_LuminalBreast.81936	0	.	49794750	49795940	0	1	1190	0
chr19	49803956	49804945	REMC_LuminalBreast.81938	0	.	49803956	49804945	0	1	989	0
chr19	49835448	49837163	REMC_LuminalBreast.81948	0	.	49835448	49837163	0	1	1715	0
chr19	49837279	49837912	prostate_carcinoma.82082	0	.	49837279	49837912	0	1	633	0
chr19	49864045	49865515	H9_polyA+.37639	0	.	49864045	49865515	0	1	1470	0
chr19	49864076	49865516	melanoma_Garraway_short_term_cultures.56907	0	.	49864076	49865516	0	1	1440	0
chr19	49864505	49865340	B_cells_Cheung.159369	0	.	49864505	49865340	0	1	835	0
chr19	49864572	49865306	B_Cells_Pritchard.2592901	0	-	49864572	49865306	0	1	734	0
chr19	49883562	49885646	liver_polyA+.109583	0	+	49883562	49885646	0	2	132,1842	0,242
chr19	49884243	49885204	B_cells_Cheung.159379	0	.	49884243	49885204	0	1	961	0
chr19	49884407	49884910	MDAMB231_Thompson.18604	0	.	49884407	49884910	0	1	503	0
chr19	49884532	49885486	melanoma_Garraway_short_term_cultures.56912	0	.	49884532	49885486	0	1	954	0
chr19	49884657	49885356	T47D_Burge_Thompson.24896	0	.	49884657	49885356	0	1	699	0
chr19	49884678	49885488	prostate_normal.49206	0	.	49884678	49885488	0	1	810	0
chr19	49884709	49885117	kidney_Gilad.70772	0	.	49884709	49885117	0	1	408	0
chr19	49884747	49885082	colon_Raymond.101863	0	.	49884747	49885082	0	1	335	0
chr19	49884763	49885647	HepG2_Caltech_ENCODE.30989	0	.	49884763	49885647	0	1	884	0
chr19	49892015	49893084	REMC_MyoepithelialBreast.75974	0	.	49892015	49893084	0	1	1069	0
chr19	49892062	49893017	A549_Myers.71274	0	.	49892062	49893017	0	1	955	0
chr19	49909719	49910114	B_cells_Cheung.159388	0	.	49909719	49910114	0	1	395	0
chr19	49910069	49914627	H1_polyA+.95919	0	-	49910069	49914627	0	3	1123,716,286	0,3496,4272
chr19	49910136	49914923	HepG2_Caltech_ENCODE.30992	0	+	49910136	49914923	0	2	1860,1513	0,3274
chr19	49910939	49912143	HepG2_Caltech_ENCODE.30993	0	.	49910939	49912143	0	1	1204	0
chr19	49911655	49912310	B_Cells_Pritchard.2593077	0	.	49911655	49912310	0	1	655	0
chr19	49913211	49914154	kidney_Gilad.70791	0	-	49913211	49914154	0	2	57,643	0,300
chr19	49913337	49914977	B_cells_Cheung.159395	0	.	49913337	49914977	0	1	1640	0
chr19	49913398	49914853	B_Cells_Pritchard.2593085	0	.	49913398	49914853	0	1	1455	0
chr19	49913474	49914281	H1_polyA+.95921	0	.	49913474	49914281	0	1	807	0
chr19	49914008	49914672	MIP101.57249	0	.	49914008	49914672	0	1	664	0
chr19	49914035	49914682	BT474_Burge_Thompson.29274	0	.	49914035	49914682	0	1	647	0
chr19	49914076	49914588	T47D_Burge_Thompson.24866	0	.	49914076	49914588	0	1	512	0
chr19	49917051	49918214	B_cells_Cheung.159399	0	.	49917051	49918214	0	1	1163	0
chr19	49917083	49918027	B_Cells_Pritchard.2593089	0	.	49917083	49918027	0	1	944	0
chr19	49918265	49919654	B_cells_Cheung.159400	0	.	49918265	49919654	0	1	1389	0
chr19	49918780	49919589	B_Cells_Pritchard.2593095	0	.	49918780	49919589	0	1	809	0
chr19	49921310	49923857	REMC_LuminalBreast.81987	0	.	49921310	49923857	0	1	2547	0
chr19	49921375	49921796	B_cells_Cheung.159402	0	.	49921375	49921796	0	1	421	0
chr19	49921473	49926652	B_Cells_Pritchard.2593099	0	+	49921473	49926652	0	2	267,60	0,5119
chr19	49926094	49928150	REMC_LuminalBreast.81989	0	.	49926094	49928150	0	1	2056	0
chr19	49927624	49928054	A549_Myers.71290	0	.	49927624	49928054	0	1	430	0
chr19	49929296	49930758	REMC_LuminalBreast.81991	0	.	49929296	49930758	0	1	1462	0
chr19	49931881	49932646	B_Cells_Pritchard.2593125	0	.	49931881	49932646	0	1	765	0
chr19	49932000	49935246	REMC_LuminalBreast.81992	0	.	49932000	49935246	0	1	3246	0
chr19	49932700	49942746	Rinn_00027580	0	+	49932700	49942746	0	3	239,94,1067	0,7440,8979
chr19	49935372	49936308	REMC_LuminalBreast.81994	0	.	49935372	49936308	0	1	936	0
chr19	49940140	49942746	Rinn_00027767	0	-	49940140	49942746	0	2	908,1541	0,1065
chr19	49940262	49941641	B_Cells_Pritchard.2593157	0	.	49940262	49941641	0	1	1379	0
chr19	49940267	49942245	melanoma_Garraway_short_term_cultures.56916	0	.	49940267	49942245	0	1	1978	0
chr19	49940469	49940854	B_cells_Cheung.159407	0	.	49940469	49940854	0	1	385	0
chr19	49940794	49941407	MDAMB468_Thompson.20572	0	.	49940794	49941407	0	1	613	0
chr19	49940886	49941469	REMC_BreastStem.41686	0	.	49940886	49941469	0	1	583	0
chr19	49940896	49941801	ZR751_Thompson.20423	0	.	49940896	49941801	0	1	905	0
chr19	49941116	49942232	BT474_Burge_Thompson.29278	0	.	49941116	49942232	0	1	1116	0
chr19	49941131	49941912	kidney_Gilad.70813	0	.	49941131	49941912	0	1	781	0
chr19	49941235	49941577	B_cells_Cheung.159408	0	.	49941235	49941577	0	1	342	0
chr19	49941507	49942382	MDAMB468_Thompson.20573	0	.	49941507	49942382	0	1	875	0
chr19	49941632	49942071	B_cells_Cheung.159409	0	.	49941632	49942071	0	1	439	0
chr19	49942124	49942437	B_cells_Cheung.159410	0	.	49942124	49942437	0	1	313	0
chr19	49997108	50001120	REMC_MyoepithelialBreast.75981	0	.	49997108	50001120	0	1	4012	0
chr19	49997114	49998220	REMC_BreastStem.41688	0	.	49997114	49998220	0	1	1106	0
chr19	49997137	50000698	H9_polyA+.37648	0	+	49997137	50000698	0	2	1399,1975	0,1586
chr19	49997139	50000689	ZR751_Thompson.20471	0	.	49997139	50000689	0	1	3550	0
chr19	49997166	49998502	BT20_Thompson.18478	0	.	49997166	49998502	0	1	1336	0
chr19	49997168	49998502	MCF10A_Thompson.18022	0	.	49997168	49998502	0	1	1334	0
chr19	50002113	50002460	liver_polyA+.109621	0	.	50002113	50002460	0	1	347	0
chr19	50021336	50022677	REMC_LuminalBreast.82005	0	.	50021336	50022677	0	1	1341	0
chr19	50036381	50038776	REMC_LuminalBreast.82009	0	.	50036381	50038776	0	1	2395	0
chr19	50105628	50108266	REMC_BreastStem.41710	0	.	50105628	50108266	0	1	2638	0
chr19	50106771	50107701	REMC_LuminalBreast.82047	0	.	50106771	50107701	0	1	930	0
chr19	50145980	50147161	prostate_carcinoma.82414	0	.	50145980	50147161	0	1	1181	0
chr19	50146141	50147148	MIP101.57284	0	.	50146141	50147148	0	1	1007	0
chr19	50146162	50147432	prostate_normal.49294	0	+	50146162	50147432	0	2	144,241	0,1029
chr19	50146162	50146714	prostate_normal.49295	0	.	50146162	50146714	0	1	552	0
chr19	50146165	50147471	MCF7_Burge_Thompson.26913	0	.	50146165	50147471	0	1	1306	0
chr19	50146216	50147552	melanoma_Garraway_short_term_cultures.56954	0	.	50146216	50147552	0	1	1336	0
chr19	50146411	50147828	K562.37588	0	.	50146411	50147828	0	1	1417	0
chr19	50188699	50189677	B_Cells_Pritchard.2594553	0	-	50188699	50189677	0	1	978	0
chr19	50192834	50193395	REMC_BreastStem.41718	0	.	50192834	50193395	0	1	561	0
chr19	50192973	50193786	REMC_MyoepithelialBreast.76043	0	.	50192973	50193786	0	1	813	0
chr19	50193009	50193779	REMC_LuminalBreast.82065	0	.	50193009	50193779	0	1	770	0
chr19	50193014	50193800	B_cells_Cheung.159875	0	.	50193014	50193800	0	1	786	0
chr19	50377909	50378315	prostate_carcinoma.82511	0	.	50377909	50378315	0	1	406	0
chr19	50377950	50378323	MDAMB468_Thompson.20615	0	.	50377950	50378323	0	1	373	0
chr19	50382175	50382975	BT474_Burge_Thompson.29331	0	.	50382175	50382975	0	1	800	0
chr19	50382430	50383155	prostate_carcinoma.82514	0	.	50382430	50383155	0	1	725	0
chr19	50382622	50383146	MCF7_Burge_Thompson.26953	0	.	50382622	50383146	0	1	524	0
chr19	50386497	50387986	B_cells_Cheung.159470	0	.	50386497	50387986	0	1	1489	0
chr19	50386535	50387255	BT474_Burge_Thompson.29332	0	.	50386535	50387255	0	1	720	0
chr19	50386829	50387956	prostate_carcinoma.82517	0	.	50386829	50387956	0	1	1127	0
chr19	50386860	50387961	MCF7_Burge_Thompson.26954	0	.	50386860	50387961	0	1	1101	0
chr19	50397457	50398294	B_cells_Cheung.159474	0	.	50397457	50398294	0	1	837	0
chr19	50397578	50398440	MIP101.57418	0	.	50397578	50398440	0	1	862	0
chr19	50397598	50397934	prostate_normal.49266	0	.	50397598	50397934	0	1	336	0
chr19	50433345	50434248	A549_Myers.71406	0	.	50433345	50434248	0	1	903	0
chr19	50433351	50434018	B_Cells_Pritchard.2594065	0	.	50433351	50434018	0	1	667	0
chr19	50433430	50434143	pHIT000033890	0	-	50433430	50434143	0	2	131,523	0,190
chr19	50433631	50434289	liver_polyA+.109662	0	.	50433631	50434289	0	1	658	0
chr19	50433650	50434136	colon_Burge.32268	0	.	50433650	50434136	0	1	486	0
chr19	50445867	50446241	B_Cells_Pritchard.2594127	0	-	50445867	50446241	0	1	374	0
chr19	50519357	50519860	BT474_Burge_Thompson.29342	0	.	50519357	50519860	0	1	503	0
chr19	50519531	50519851	B_Cells_Pritchard.2594253	0	.	50519531	50519851	0	1	320	0
chr19	50523757	50524519	REMC_LuminalBreast.82093	0	.	50523757	50524519	0	1	762	0
chr19	50528547	50529642	REMC_LuminalBreast.82095	0	.	50528547	50529642	0	1	1095	0
chr19	50567592	50567930	prostate_carcinoma.82208	0	.	50567592	50567930	0	1	338	0
chr19	50569950	50570815	REMC_LuminalBreast.105597	0	.	50569950	50570815	0	1	865	0
chr19	50569963	50570647	REMC_MyoepithelialBreast.126901	0	.	50569963	50570647	0	1	684	0
chr19	50570915	50572305	REMC_LuminalBreast.105598	0	.	50570915	50572305	0	1	1390	0
chr19	50799766	50803518	B_Cells_Pritchard.3382657	0	+	50799766	50803518	0	2	306,1625	0,2127
chr19	50800773	50803161	B_Cells_Pritchard.3382655	0	-	50800773	50803161	0	4	30,127,154,25	0,1383,1646,2363
chr19	50801906	50802579	H1_polyA+.96122	0	.	50801906	50802579	0	1	673	0
chr19	50801950	50802696	REMC_LuminalBreast.82113	0	.	50801950	50802696	0	1	746	0
chr19	50802038	50803023	A549_Myers.71549	0	.	50802038	50803023	0	1	985	0
chr19	50859049	50859573	B_Cells_Pritchard.3387931	0	+	50859049	50859573	0	1	524	0
chr19	50859067	50860155	A549_Myers.71560	0	.	50859067	50860155	0	1	1088	0
chr19	50880176	50881382	B_cells_Cheung.159840	0	.	50880176	50881382	0	1	1206	0
chr19	50900100	50902428	REMC_BreastStem.41779	0	.	50900100	50902428	0	1	2328	0
chr19	50901556	50902797	HepG2_Caltech_ENCODE.31091	0	.	50901556	50902797	0	1	1241	0
chr19	50956847	50957397	B_Cells_Pritchard.2594959	0	.	50956847	50957397	0	1	550	0
chr19	50958220	50958763	A549_Myers.71544	0	.	50958220	50958763	0	1	543	0
chr19	50988901	50989432	B_cells_Cheung.159688	0	.	50988901	50989432	0	1	531	0
chr19	51124272	51125020	BT474_Burge_Thompson.29413	0	.	51124272	51125020	0	1	748	0
chr19	51124315	51124924	B_Cells_Pritchard.2595207	0	.	51124315	51124924	0	1	609	0
chr19	51182388	51188627	B_Cells_Pritchard.2595449	0	+	51182388	51188627	0	2	384,118	0,6121
chr19	51222864	51232968	B_Cells_Pritchard.2595493	0	-	51222864	51232968	0	4	249,787,32,3052	0,5579,6850,7052
chr19	51222864	51232968	B_Cells_Pritchard.2595491	0	+	51222864	51232968	0	4	825,359,348,2515	0,5981,7167,7589
chr19	51222870	51223199	A549_Myers.71630	0	.	51222870	51223199	0	1	329	0
chr19	51225436	51226484	B_cells_Cheung.159735	0	.	51225436	51226484	0	1	1048	0
chr19	51225480	51226148	brain_AmbionMAQC.37536	0	.	51225480	51226148	0	1	668	0
chr19	51225488	51226099	prostate_normal.49403	0	.	51225488	51226099	0	1	611	0
chr19	51226816	51229206	brain_AmbionMAQC.37537	0	.	51226816	51229206	0	1	2390	0
chr19	51227101	51228386	B_cells_Cheung.159737	0	.	51227101	51228386	0	1	1285	0
chr19	51227107	51228322	B_Cells_Pritchard.2595531	0	+	51227107	51228322	0	3	492,259,184	0,715,1031
chr19	51227887	51228319	prostate_carcinoma.82335	0	.	51227887	51228319	0	1	432	0
chr19	51227929	51228313	prostate_normal.49405	0	.	51227929	51228313	0	1	384	0
chr19	51228885	51229264	MIP101.57475	0	.	51228885	51229264	0	1	379	0
chr19	51229951	51232997	H1_polyA+.96231	0	.	51229951	51232997	0	1	3046	0
chr19	51230688	51232976	B_cells_Cheung.159741	0	.	51230688	51232976	0	1	2288	0
chr19	51230695	51232147	brain_AmbionMAQC.37538	0	.	51230695	51232147	0	1	1452	0
chr19	51230740	51232210	prostate_normal.49408	0	.	51230740	51232210	0	1	1470	0
chr19	51230771	51231306	H9_polyA+.37796	0	.	51230771	51231306	0	1	535	0
chr19	51231110	51231879	A549_Myers.71634	0	.	51231110	51231879	0	1	769	0
chr19	51231446	51232229	prostate_carcinoma.82337	0	.	51231446	51232229	0	1	783	0
chr19	51232248	51232736	brain_AmbionMAQC.37539	0	.	51232248	51232736	0	1	488	0
chr19	51232335	51232990	prostate_carcinoma.82339	0	.	51232335	51232990	0	1	655	0
chr19	51295366	51296811	REMC_LuminalBreast.82169	0	.	51295366	51296811	0	1	1445	0
chr19	51357758	51359412	melanoma_Garraway_short_term_cultures.57216	0	.	51357758	51359412	0	1	1654	0
chr19	51357889	51359310	MCF10A_Thompson.18101	0	.	51357889	51359310	0	1	1421	0
chr19	51368370	51369134	MCF10A_Thompson.18102	0	.	51368370	51369134	0	1	764	0
chr19	51374795	51392695	HME_Burge.34998	0	-	51374795	51392695	0	2	23,960	0,16940
chr19	51376398	51391518	Rinn_00027056	0	+	51376398	51391518	0	2	39,314	0,14806
chr19	51382856	51383861	REMC_LuminalBreast.82172	0	.	51382856	51383861	0	1	1005	0
chr19	51384126	51387543	melanoma_Garraway_short_term_cultures.57217	0	.	51384126	51387543	0	1	3417	0
chr19	51384145	51387544	MDAMB468_Thompson.20680	0	.	51384145	51387544	0	1	3399	0
chr19	51384147	51386229	HeLa_polyA+_Chen.30379	0	.	51384147	51386229	0	1	2082	0
chr19	51384242	51387559	MCF10A_Thompson.18128	0	.	51384242	51387559	0	1	3317	0
chr19	51384618	51387536	MIP101.57493	0	.	51384618	51387536	0	1	2918	0
chr19	51384989	51387548	BT20_Thompson.18553	0	.	51384989	51387548	0	1	2559	0
chr19	51385634	51386091	HME_Burge.35002	0	.	51385634	51386091	0	1	457	0
chr19	51387672	51389835	MDAMB468_Thompson.20682	0	.	51387672	51389835	0	1	2163	0
chr19	51387791	51391058	melanoma_Garraway_short_term_cultures.57218	0	.	51387791	51391058	0	1	3267	0
chr19	51387804	51391047	MCF10A_Thompson.18130	0	.	51387804	51391047	0	1	3243	0
chr19	51388142	51391054	BT20_Thompson.18555	0	.	51388142	51391054	0	1	2912	0
chr19	51388258	51393100	K562.37690	0	.	51388258	51393100	0	1	4842	0
chr19	51388304	51395003	HeLa_polyA+_Chen.30380	0	.	51388304	51395003	0	1	6699	0
chr19	51389990	51391021	MDAMB468_Thompson.20683	0	.	51389990	51391021	0	1	1031	0
chr19	51391162	51393005	melanoma_Garraway_short_term_cultures.57219	0	.	51391162	51393005	0	1	1843	0
chr19	51391281	51393089	REMC_LuminalBreast.82174	0	.	51391281	51393089	0	1	1808	0
chr19	51391316	51392695	HME_Burge.34999	0	.	51391316	51392695	0	1	1379	0
chr19	51391487	51392700	A549_Myers.71652	0	.	51391487	51392700	0	2	728,485	0,728
chr19	51391499	51393074	MCF10A_Thompson.18131	0	.	51391499	51393074	0	1	1575	0
chr19	51391511	51398199	BT20_Thompson.18556	0	-	51391511	51398199	0	2	2028,263	0,6425
chr19	51393190	51394977	melanoma_Garraway_short_term_cultures.57220	0	.	51393190	51394977	0	1	1787	0
chr19	51393259	51409593	prostate_carcinoma.82343	0	+	51393259	51409593	0	2	94,496	0,15838
chr19	51395161	51398219	melanoma_Garraway_short_term_cultures.57221	0	.	51395161	51398219	0	1	3058	0
chr19	51395170	51396277	REMC_LuminalBreast.82177	0	.	51395170	51396277	0	1	1107	0
chr19	51395254	51397486	HeLa_polyA+_Chen.30370	0	.	51395254	51397486	0	1	2232	0
chr19	51395921	51397194	prostate_carcinoma.82344	0	.	51395921	51397194	0	1	1273	0
chr19	51396025	51399343	Rinn_00027057	0	+	51396025	51399343	0	3	714,98,196	0,2630,3122
chr19	51396975	51397498	REMC_LuminalBreast.82178	0	.	51396975	51397498	0	1	523	0
chr19	51398521	51407672	Rinn_00026793	0	+	51398521	51407672	0	6	232,164,117,239,109,461	0,626,1379,5506,6736,8690
chr19	51399132	51399551	MCF10A_Thompson.18132	0	.	51399132	51399551	0	1	419	0
chr19	51400184	51401296	REMC_LuminalBreast.82180	0	.	51400184	51401296	0	1	1112	0
chr19	51400450	51401642	MCF10A_Thompson.18133	0	.	51400450	51401642	0	1	1192	0
chr19	51400548	51401835	melanoma_Garraway_short_term_cultures.57222	0	.	51400548	51401835	0	1	1287	0
chr19	51401502	51403062	REMC_LuminalBreast.82181	0	.	51401502	51403062	0	1	1560	0
chr19	51401839	51405185	HIT000047395	0	+	51401839	51405185	0	1	3346	0
chr19	51403212	51404276	melanoma_Garraway_short_term_cultures.57224	0	.	51403212	51404276	0	1	1064	0
chr19	51403635	51409612	REMC_LuminalBreast.82182	0	+	51403635	51409612	0	4	631,1158,702,719	0,1623,4243,5258
chr19	51404029	51408642	Rinn_00027582	0	+	51404029	51408642	0	5	237,109,120,222,218	0,1228,3182,3856,4395
chr19	51404034	51410554	Rinn_00027059	0	+	51404034	51410554	0	4	232,109,695,1662	0,1223,3851,4858
chr19	51404034	51410554	Rinn_00027058	0	+	51404034	51410554	0	5	232,109,222,148,1662	0,1223,3851,4398,4858
chr19	51405337	51409932	Rinn_00026754	0	+	51405337	51409932	0	6	29,71,120,222,156,1040	0,1367,1874,2548,3087,3555
chr19	51405338	51409934	NR_027003	0	+	51405338	51409934	0	6	28,70,119,221,155,1041	0,1367,1874,2548,3087,3555
chr19	51405338	51409938	HIT000025664	0	+	51405338	51409938	0	6	28,70,119,221,155,1045	0,1367,1874,2548,3087,3555
chr19	51406596	51407005	A549_Myers.71658	0	.	51406596	51407005	0	1	409	0
chr19	51406978	51409612	REMC_LuminalBreast.82183	0	.	51406978	51409612	0	1	2634	0
chr19	51407207	51407525	A549_Myers.71659	0	.	51407207	51407525	0	1	318	0
chr19	51407235	51407704	brain_AmbionMAQC.37545	0	.	51407235	51407704	0	1	469	0
chr19	51407873	51408766	melanoma_Garraway_short_term_cultures.57225	0	.	51407873	51408766	0	1	893	0
chr19	51408413	51409612	MCF10A_Thompson.18135	0	+	51408413	51409612	0	2	167,719	0,480
chr19	51408557	51409594	brain_AmbionMAQC.37547	0	+	51408557	51409594	0	2	23,701	0,336
chr19	51408736	51409594	brain_AmbionMAQC.37546	0	.	51408736	51409594	0	1	858	0
chr19	51408752	51409627	REMC_MyoepithelialBreast.76101	0	.	51408752	51409627	0	1	875	0
chr19	51408817	51409552	MDAMB468_Thompson.20677	0	.	51408817	51409552	0	1	735	0
chr19	51408837	51409612	BT20_Thompson.18558	0	.	51408837	51409612	0	1	775	0
chr19	51408877	51409637	HeLa_polyA+_Chen.30374	0	.	51408877	51409637	0	1	760	0
chr19	51408884	51409614	melanoma_Garraway_short_term_cultures.57226	0	.	51408884	51409614	0	1	730	0
chr19	51415220	51415638	A549_Myers.71661	0	.	51415220	51415638	0	1	418	0
chr19	51417049	51417471	A549_Myers.71662	0	.	51417049	51417471	0	1	422	0
chr19	51466546	51467970	H1_polyA+.96240	0	.	51466546	51467970	0	1	1424	0
chr19	51467225	51467620	B_cells_Cheung.159748	0	.	51467225	51467620	0	1	395	0
chr19	51486969	51487308	B_Cells_Pritchard.2596119	0	.	51486969	51487308	0	1	339	0
chr19	51487002	51487308	BT474_Burge_Thompson.29426	0	.	51487002	51487308	0	1	306	0
chr19	51588134	51590108	REMC_BreastStem.41805	0	.	51588134	51590108	0	1	1974	0
chr19	51588766	51589975	prostate_normal.49430	0	.	51588766	51589975	0	1	1209	0
chr19	51589192	51590014	REMC_MyoepithelialBreast.76118	0	.	51589192	51590014	0	1	822	0
chr19	51589539	51590116	REMC_LuminalBreast.82225	0	.	51589539	51590116	0	1	577	0
chr19	51590735	51591312	liver_polyA+.109906	0	.	51590735	51591312	0	1	577	0
chr19	51590761	51591995	H1_polyA+.96277	0	.	51590761	51591995	0	1	1234	0
chr19	51590772	51591312	A549_Myers.71701	0	.	51590772	51591312	0	1	540	0
chr19	51590785	51591317	melanoma_Garraway_short_term_cultures.57239	0	.	51590785	51591317	0	1	532	0
chr19	51596556	51596976	melanoma_Garraway_short_term_cultures.57243	0	.	51596556	51596976	0	1	420	0
chr19	51596634	51597079	REMC_MyoepithelialBreast.76121	0	.	51596634	51597079	0	1	445	0
chr19	51598550	51600122	H1_polyA+.96279	0	.	51598550	51600122	0	1	1572	0
chr19	51598756	51599348	HepG2_Caltech_ENCODE.31142	0	.	51598756	51599348	0	1	592	0
chr19	51598763	51599934	prostate_normal.49436	0	.	51598763	51599934	0	1	1171	0
chr19	51598853	51599654	A549_Myers.71692	0	.	51598853	51599654	0	1	801	0
chr19	51598940	51599336	testes_Burge.45064	0	.	51598940	51599336	0	1	396	0
chr19	51599019	51600415	REMC_MyoepithelialBreast.76123	0	.	51599019	51600415	0	1	1396	0
chr19	51599482	51600116	prostate_carcinoma.82383	0	.	51599482	51600116	0	1	634	0
chr19	51600526	51601291	prostate_carcinoma.82384	0	.	51600526	51601291	0	1	765	0
chr19	51600630	51601365	H1_polyA+.96280	0	.	51600630	51601365	0	1	735	0
chr19	51602032	51604218	REMC_BreastStem.41804	0	.	51602032	51604218	0	1	2186	0
chr19	51602112	51602814	REMC_MyoepithelialBreast.76124	0	.	51602112	51602814	0	1	702	0
chr19	51602147	51602764	H1_polyA+.96281	0	.	51602147	51602764	0	1	617	0
chr19	51602896	51603975	K562.37694	0	.	51602896	51603975	0	1	1079	0
chr19	51602911	51603833	prostate_normal.49434	0	.	51602911	51603833	0	1	922	0
chr19	51602912	51604163	melanoma_Garraway_short_term_cultures.57245	0	.	51602912	51604163	0	1	1251	0
chr19	51602914	51603501	prostate_carcinoma.82387	0	.	51602914	51603501	0	1	587	0
chr19	51602928	51603863	HME_Burge.35023	0	.	51602928	51603863	0	1	935	0
chr19	51602997	51604167	REMC_MyoepithelialBreast.76125	0	.	51602997	51604167	0	1	1170	0
chr19	51603029	51603843	breast_Burge.34891	0	.	51603029	51603843	0	1	814	0
chr19	51603462	51603903	H1_rRNA-depleted_UCSD_REMC.71994	0	.	51603462	51603903	0	1	441	0
chr19	51603501	51603950	prostate_carcinoma.82381	0	.	51603501	51603950	0	1	449	0
chr19	51619799	51624036	brain_AmbionMAQC.37570	0	-	51619799	51624036	0	2	627,3292	0,945
chr19	51620645	51624036	brain_AmbionMAQC.37572	0	.	51620645	51624036	0	1	3391	0
chr19	51620774	51621795	REMC_MyoepithelialBreast.76130	0	.	51620774	51621795	0	1	1021	0
chr19	51621041	51624039	prostate_carcinoma.82390	0	.	51621041	51624039	0	1	2998	0
chr19	51621881	51622715	H9_polyA+.37821	0	.	51621881	51622715	0	1	834	0
chr19	51621898	51623674	REMC_MyoepithelialBreast.76131	0	.	51621898	51623674	0	1	1776	0
chr19	51621917	51623978	prostate_normal.49442	0	.	51621917	51623978	0	1	2061	0
chr19	51622823	51623829	H9_polyA+.37822	0	.	51622823	51623829	0	1	1006	0
chr19	51623472	51624122	A549_Myers.71708	0	.	51623472	51624122	0	1	650	0
chr19	51659675	51660571	H1_polyA+.96286	0	.	51659675	51660571	0	1	896	0
chr19	51699081	51699573	B_Cells_Pritchard.2596685	0	.	51699081	51699573	0	1	492	0
chr19	51709403	51710448	H1_polyA+.96291	0	.	51709403	51710448	0	1	1045	0
chr19	51710233	51710739	B_Cells_Pritchard.2596737	0	.	51710233	51710739	0	1	506	0
chr19	51806960	51808216	B_cells_Cheung.159815	0	.	51806960	51808216	0	1	1256	0
chr19	51806965	51808089	CD4_Plagnol_activated.55147	0	.	51806965	51808089	0	1	1124	0
chr19	51810877	51811435	B_cells_Cheung.159819	0	.	51810877	51811435	0	1	558	0
chr19	51810882	51811436	CD4_Plagnol_activated.55149	0	.	51810882	51811436	0	1	554	0
chr19	51811701	51813018	CD4_Plagnol_activated.55150	0	.	51811701	51813018	0	1	1317	0
chr19	51811715	51812615	B_Cells_Pritchard.2597189	0	-	51811715	51812615	0	1	900	0
chr19	51824847	51825430	CD4_Plagnol_activated.55155	0	.	51824847	51825430	0	1	583	0
chr19	51825699	51827164	CD4_Plagnol_activated.55156	0	.	51825699	51827164	0	1	1465	0
chr19	51831377	51831893	prostate_normal.49472	0	.	51831377	51831893	0	1	516	0
chr19	51831906	51834253	HIT000011938	0	+	51831906	51834253	0	1	2347	0
chr19	51831906	51833322	HIT000003484	0	+	51831906	51833322	0	1	1416	0
chr19	51831929	51834258	HIT000291895	0	+	51831929	51834258	0	1	2329	0
chr19	51832019	51834183	brain_AmbionMAQC.38977	0	.	51832019	51834183	0	1	2164	0
chr19	51832024	51834339	CD4_Plagnol_activated.55161	0	.	51832024	51834339	0	1	2315	0
chr19	51832172	51832728	CD4_Plagnol_resting.53568	0	.	51832172	51832728	0	1	556	0
chr19	51832173	51834402	H1_polyA+.96305	0	.	51832173	51834402	0	1	2229	0
chr19	51832176	51832708	A549_Myers.71739	0	.	51832176	51832708	0	1	532	0
chr19	51832176	51832666	B_Cells_Pritchard.2597205	0	+	51832176	51832666	0	1	490	0
chr19	51832377	51832696	H1_rRNA-depleted_UCSD_REMC.72018	0	.	51832377	51832696	0	1	319	0
chr19	51832790	51834244	CD4_Plagnol_resting.53569	0	.	51832790	51834244	0	1	1454	0
chr19	51832827	51833756	melanoma_Garraway_short_term_cultures.57253	0	.	51832827	51833756	0	1	929	0
chr19	51832833	51833885	prostate_normal.49744	0	.	51832833	51833885	0	1	1052	0
chr19	51832944	51834238	B_Cells_Pritchard.2597209	0	+	51832944	51834238	0	1	1294	0
chr19	51833158	51834412	A549_Myers.71740	0	.	51833158	51834412	0	1	1254	0
chr19	51833198	51833512	H1_rRNA-depleted_UCSD_REMC.72019	0	.	51833198	51833512	0	1	314	0
chr19	51834376	51835064	B_Cells_Pritchard.2596969	0	.	51834376	51835064	0	1	688	0
chr19	51834506	51835069	A549_Myers.71741	0	.	51834506	51835069	0	1	563	0
chr19	51858522	51858922	testes_Burge.45119	0	.	51858522	51858922	0	1	400	0
chr19	51862795	51863878	REMC_MyoepithelialBreast.76141	0	.	51862795	51863878	0	1	1083	0
chr19	51956449	51961334	REMC_MyoepithelialBreast.76161	0	.	51956449	51961334	0	1	4885	0
chr19	51957180	51958260	H1_polyA+.96440	0	.	51957180	51958260	0	1	1080	0
chr19	51957314	51961337	REMC_BreastStem.41830	0	.	51957314	51961337	0	1	4023	0
chr19	51957324	51958301	REMC_LuminalBreast.82442	0	.	51957324	51958301	0	1	977	0
chr19	51961526	51962846	H1_polyA+.96442	0	.	51961526	51962846	0	1	1320	0
chr19	51961542	51962699	melanoma_Garraway_short_term_cultures.57285	0	.	51961542	51962699	0	1	1157	0
chr19	51961566	51962784	REMC_MyoepithelialBreast.76162	0	.	51961566	51962784	0	1	1218	0
chr19	51961575	51962553	CD4_Plagnol_resting.53606	0	.	51961575	51962553	0	1	978	0
chr19	51961581	51962782	REMC_LuminalBreast.82444	0	.	51961581	51962782	0	1	1201	0
chr19	51961612	51962438	H9_polyA+.37841	0	.	51961612	51962438	0	1	826	0
chr19	51961619	51962552	CD4_Plagnol_activated.55191	0	.	51961619	51962552	0	1	933	0
chr19	51961627	51962871	B_cells_Cheung.160205	0	.	51961627	51962871	0	1	1244	0
chr19	51961683	51962390	brain_AmbionMAQC.37587	0	.	51961683	51962390	0	1	707	0
chr19	51961728	51962109	ovary_Raymond.202415	0	.	51961728	51962109	0	1	381	0
chr19	51962059	51962462	BT474_Burge_Thompson.29566	0	.	51962059	51962462	0	1	403	0
chr19	51963173	51968661	REMC_MyoepithelialBreast.76163	0	.	51963173	51968661	0	1	5488	0
chr19	52004701	52005136	pHIT000034035	0	+	52004701	52005136	0	1	435	0
chr19	52004744	52005131	A549_Myers.71821	0	.	52004744	52005131	0	1	387	0
chr19	52008419	52008747	A549_Myers.71822	0	.	52008419	52008747	0	1	328	0
chr19	52008435	52009003	BT474_Burge_Thompson.29437	0	.	52008435	52009003	0	1	568	0
chr19	52008485	52008996	B_Cells_Pritchard.2597371	0	.	52008485	52008996	0	1	511	0
chr19	52008557	52008990	ZR751_Thompson.20550	0	.	52008557	52008990	0	1	433	0
chr19	52016685	52017549	B_cells_Cheung.159830	0	.	52016685	52017549	0	1	864	0
chr19	52016695	52017565	HepG2_Caltech_ENCODE.31176	0	.	52016695	52017565	0	1	870	0
chr19	52016715	52017820	B_Cells_Pritchard.2597573	0	+	52016715	52017820	0	1	1105	0
chr19	52016897	52028665	B_Cells_Pritchard.2597575	0	-	52016897	52028665	0	3	86,279,403	0,236,11365
chr19	52024729	52025320	REMC_LuminalBreast.82229	0	.	52024729	52025320	0	1	591	0
chr19	52025719	52026939	REMC_LuminalBreast.82230	0	.	52025719	52026939	0	1	1220	0
chr19	52029786	52030521	A549_Myers.71825	0	.	52029786	52030521	0	1	735	0
chr19	52029789	52030391	prostate_normal.49478	0	.	52029789	52030391	0	1	602	0
chr19	52031606	52032157	B_cells_Cheung.159833	0	.	52031606	52032157	0	1	551	0
chr19	52051573	52052068	A549_Myers.71834	0	.	52051573	52052068	0	1	495	0
chr19	52054684	52055256	MeWo_Garraway.30851	0	.	52054684	52055256	0	1	572	0
chr19	52054693	52055205	melanoma_Garraway_short_term_cultures.57294	0	.	52054693	52055205	0	1	512	0
chr19	52054726	52055905	K562.37724	0	.	52054726	52055905	0	1	1179	0
chr19	52054729	52055203	liver_polyA+.109980	0	.	52054729	52055203	0	1	474	0
chr19	52054729	52055734	prostate_carcinoma.82426	0	.	52054729	52055734	0	1	1005	0
chr19	52054734	52055487	H9_polyA+.37852	0	.	52054734	52055487	0	1	753	0
chr19	52054985	52055436	H1_rRNA-depleted_UCSD_REMC.72049	0	.	52054985	52055436	0	1	451	0
chr19	52055341	52055988	CD4_Plagnol_resting.53611	0	.	52055341	52055988	0	1	647	0
chr19	52055358	52055886	liver_polyA+.109981	0	.	52055358	52055886	0	1	528	0
chr19	52055506	52055990	H9_polyA-_Chen.12229	0	.	52055506	52055990	0	1	484	0
chr19	52055548	52056017	H9_polyA+.37853	0	.	52055548	52056017	0	1	469	0
chr19	52055656	52056073	testes_Burge.45137	0	.	52055656	52056073	0	1	417	0
chr19	52201666	52202314	H1_polyA+.96392	0	.	52201666	52202314	0	1	648	0
chr19	52201917	52202301	B_cells_Cheung.159850	0	.	52201917	52202301	0	1	384	0
chr19	52210104	52210984	REMC_LuminalBreast.82287	0	.	52210104	52210984	0	1	880	0
chr19	52211835	52212393	REMC_MyoepithelialBreast.76184	0	.	52211835	52212393	0	1	558	0
chr19	52251579	52251997	REMC_LuminalBreast.82296	0	.	52251579	52251997	0	1	418	0
chr19	52251936	52253144	HeLa_polyA+_Chen.30405	0	.	52251936	52253144	0	1	1208	0
chr19	52252142	52253547	REMC_LuminalBreast.82297	0	.	52252142	52253547	0	1	1405	0
chr19	52252243	52253110	REMC_MyoepithelialBreast.76190	0	.	52252243	52253110	0	1	867	0
chr19	52253578	52254244	HeLa_polyA+_Chen.30406	0	.	52253578	52254244	0	1	666	0
chr19	52257046	52257526	B_cells_Cheung.159860	0	.	52257046	52257526	0	1	480	0
chr19	52257099	52257447	REMC_LuminalBreast.82300	0	.	52257099	52257447	0	1	348	0
chr19	52257101	52257601	HeLa_polyA+_Chen.30408	0	.	52257101	52257601	0	1	500	0
chr19	52257758	52258190	B_Cells_Pritchard.2598159	0	-	52257758	52258190	0	1	432	0
chr19	52406992	52407661	B_cells_Cheung.159987	0	.	52406992	52407661	0	1	669	0
chr19	52407046	52408550	REMC_LuminalBreast.82352	0	.	52407046	52408550	0	1	1504	0
chr19	52407046	52407769	REMC_MyoepithelialBreast.76225	0	.	52407046	52407769	0	1	723	0
chr19	52410173	52411908	REMC_LuminalBreast.82354	0	.	52410173	52411908	0	1	1735	0
chr19	52412100	52412744	REMC_LuminalBreast.82355	0	.	52412100	52412744	0	1	644	0
chr19	52430952	52433684	B_cells_Cheung.160000	0	.	52430952	52433684	0	1	2732	0
chr19	52431045	52435292	T47D_Burge_Thompson.25040	0	-	52431045	52435292	0	2	92,316	0,3931
chr19	52431257	52431913	HepG2_Caltech_ENCODE.31212	0	.	52431257	52431913	0	1	656	0
chr19	52432349	52434530	REMC_MyoepithelialBreast.76280	0	.	52432349	52434530	0	1	2181	0
chr19	52432946	52433738	REMC_BreastStem.41868	0	.	52432946	52433738	0	1	792	0
chr19	52433623	52435968	REMC_LuminalBreast.82361	0	.	52433623	52435968	0	1	2345	0
chr19	52433756	52436244	B_cells_Cheung.160002	0	.	52433756	52436244	0	1	2488	0
chr19	52433826	52434630	H1_polyA+.96452	0	.	52433826	52434630	0	1	804	0
chr19	52433858	52435834	CD4_Plagnol_activated.55254	0	.	52433858	52435834	0	1	1976	0
chr19	52433942	52434501	MeI_Garraway.14859	0	.	52433942	52434501	0	1	559	0
chr19	52433965	52434680	HepG2_Caltech_ENCODE.31213	0	.	52433965	52434680	0	1	715	0
chr19	52434054	52434504	A549_Myers.72017	0	.	52434054	52434504	0	1	450	0
chr19	52434902	52436025	H1_polyA+.96455	0	.	52434902	52436025	0	1	1123	0
chr19	52435023	52435355	MCF7_Burge_Thompson.27128	0	.	52435023	52435355	0	1	332	0
chr19	52435056	52436236	REMC_MyoepithelialBreast.76282	0	.	52435056	52436236	0	1	1180	0
chr19	52436196	52439678	H1_polyA+.96453	0	.	52436196	52439678	0	1	3482	0
chr19	52436257	52446576	H1_polyA+.96454	0	+	52436257	52446576	0	2	1464,720	0,9599
chr19	52436341	52438323	B_cells_Cheung.160004	0	.	52436341	52438323	0	1	1982	0
chr19	52436375	52436975	A549_Myers.72015	0	.	52436375	52436975	0	1	600	0
chr19	52436380	52438361	REMC_MyoepithelialBreast.76283	0	.	52436380	52438361	0	1	1981	0
chr19	52436395	52437913	HepG2_Caltech_ENCODE.31214	0	.	52436395	52437913	0	1	1518	0
chr19	52436407	52438298	REMC_LuminalBreast.82363	0	.	52436407	52438298	0	1	1891	0
chr19	52436451	52437740	BT474_Burge_Thompson.29463	0	.	52436451	52437740	0	1	1289	0
chr19	52436522	52439385	CD4_Plagnol_activated.55255	0	.	52436522	52439385	0	1	2863	0
chr19	52436534	52439608	REMC_BreastStem.41870	0	.	52436534	52439608	0	1	3074	0
chr19	52436545	52437407	prostate_normal.49515	0	.	52436545	52437407	0	1	862	0
chr19	52436584	52438292	melanoma_Garraway_short_term_cultures.57365	0	.	52436584	52438292	0	1	1708	0
chr19	52436593	52437729	K562.37750	0	.	52436593	52437729	0	1	1136	0
chr19	52437044	52437677	A549_Myers.72018	0	.	52437044	52437677	0	1	633	0
chr19	52437044	52438319	A549_Myers.72020	0	-	52437044	52438319	0	2	235,256	0,1019
chr19	52437845	52438363	MIP101.57641	0	.	52437845	52438363	0	1	518	0
chr19	52437966	52438319	A549_Myers.72019	0	.	52437966	52438319	0	1	353	0
chr19	52438437	52438820	B_cells_Cheung.160005	0	.	52438437	52438820	0	1	383	0
chr19	52438449	52439812	REMC_LuminalBreast.82362	0	.	52438449	52439812	0	1	1363	0
chr19	52438470	52440286	REMC_MyoepithelialBreast.76281	0	.	52438470	52440286	0	1	1816	0
chr19	52438923	52439567	B_cells_Cheung.160003	0	.	52438923	52439567	0	1	644	0
chr19	52438928	52439296	BT474_Burge_Thompson.29462	0	.	52438928	52439296	0	1	368	0
chr19	52438966	52439452	MIP101.57642	0	.	52438966	52439452	0	1	486	0
chr19	52439876	52440313	REMC_LuminalBreast.82364	0	.	52439876	52440313	0	1	437	0
chr19	52439962	52440575	H1_polyA+.96456	0	.	52439962	52440575	0	1	613	0
chr19	52444852	52449501	REMC_LuminalBreast.82367	0	.	52444852	52449501	0	1	4649	0
chr19	52444962	52446009	REMC_MyoepithelialBreast.76286	0	.	52444962	52446009	0	1	1047	0
chr19	52472499	52473255	melanoma_Garraway_short_term_cultures.57375	0	.	52472499	52473255	0	1	756	0
chr19	52473332	52473674	B_cells_Cheung.160012	0	.	52473332	52473674	0	1	342	0
chr19	52473363	52475905	REMC_MyoepithelialBreast.76291	0	.	52473363	52475905	0	1	2542	0
chr19	52476105	52482606	REMC_LuminalBreast.82372	0	.	52476105	52482606	0	1	6501	0
chr19	52480691	52481650	REMC_MyoepithelialBreast.76294	0	.	52480691	52481650	0	1	959	0
chr19	52480706	52481256	B_cells_Cheung.160019	0	.	52480706	52481256	0	1	550	0
chr19	52484500	52485767	B_cells_Cheung.160023	0	.	52484500	52485767	0	1	1267	0
chr19	52485662	52486776	REMC_LuminalBreast.82374	0	.	52485662	52486776	0	1	1114	0
chr19	52487007	52502483	prostate_carcinoma.82715	0	-	52487007	52502483	0	2	132,393	0,15083
chr19	52490890	52492858	REMC_MyoepithelialBreast.76300	0	.	52490890	52492858	0	1	1968	0
chr19	52491167	52491831	BT474_Burge_Thompson.29468	0	.	52491167	52491831	0	1	664	0
chr19	52491306	52491925	K562.37762	0	.	52491306	52491925	0	1	619	0
chr19	52494696	52495756	REMC_MyoepithelialBreast.76264	0	.	52494696	52495756	0	1	1060	0
chr19	52495006	52495573	MIP101.57653	0	.	52495006	52495573	0	1	567	0
chr19	52495086	52495547	A549_Myers.72029	0	.	52495086	52495547	0	1	461	0
chr19	52501600	52502483	prostate_carcinoma.82716	0	.	52501600	52502483	0	1	883	0
chr19	52502027	52502461	B_cells_Cheung.160039	0	.	52502027	52502461	0	1	434	0
chr19	52518473	52519621	prostate_carcinoma.82731	0	.	52518473	52519621	0	1	1148	0
chr19	52518641	52518967	prostate_normal.49607	0	.	52518641	52518967	0	1	326	0
chr19	52519051	52519505	prostate_normal.49601	0	.	52519051	52519505	0	1	454	0
chr19	52580268	52580693	BT474_Burge_Thompson.29499	0	.	52580268	52580693	0	1	425	0
chr19	52580787	52586923	BT474_Burge_Thompson.29500	0	+	52580787	52586923	0	2	281,732	0,5404
chr19	52587585	52588125	HeLa_polyA+_Chen.30463	0	.	52587585	52588125	0	1	540	0
chr19	52590278	52591077	REMC_LuminalBreast.82398	0	.	52590278	52591077	0	1	799	0
chr19	52593822	52594440	A549_Myers.71953	0	.	52593822	52594440	0	1	618	0
chr19	52595813	52597167	REMC_BreastStem.41888	0	.	52595813	52597167	0	1	1354	0
chr19	52596087	52597006	REMC_LuminalBreast.82400	0	.	52596087	52597006	0	1	919	0
chr19	52616612	52616972	B_cells_Cheung.160070	0	.	52616612	52616972	0	1	360	0
chr19	52618674	52619046	A549_Myers.71960	0	.	52618674	52619046	0	1	372	0
chr19	52668450	52669175	H1_polyA+.96508	0	.	52668450	52669175	0	1	725	0
chr19	52668451	52668797	brain_AmbionMAQC.37755	0	.	52668451	52668797	0	1	346	0
chr19	52668479	52669165	prostate_normal.49639	0	.	52668479	52669165	0	1	686	0
chr19	52668488	52669195	BT474_Burge_Thompson.29526	0	.	52668488	52669195	0	1	707	0
chr19	52793171	52793603	H1_polyA+.96539	0	.	52793171	52793603	0	1	432	0
chr19	52795294	52795954	A549_Myers.71999	0	.	52795294	52795954	0	1	660	0
chr19	52796386	52796919	B_cells_Cheung.160132	0	.	52796386	52796919	0	1	533	0
chr19	52902121	52902650	A549_Myers.72039	0	.	52902121	52902650	0	1	529	0
chr19	52957894	52958310	BT474_Burge_Thompson.29553	0	.	52957894	52958310	0	1	416	0
chr19	52957934	52958465	CD4_Plagnol_resting.53743	0	.	52957934	52958465	0	1	531	0
chr19	52960318	52962752	REMC_BreastStem.41913	0	.	52960318	52962752	0	1	2434	0
chr19	52960514	52961370	B_cells_Cheung.160171	0	.	52960514	52961370	0	1	856	0
chr19	52960538	52961118	BT474_Burge_Thompson.29554	0	.	52960538	52961118	0	1	580	0
chr19	52960575	52961262	CD4_Plagnol_activated.55356	0	.	52960575	52961262	0	1	687	0
chr19	52966095	52967448	REMC_MyoepithelialBreast.76396	0	.	52966095	52967448	0	1	1353	0
chr19	52968812	52969831	REMC_BreastStem.41916	0	.	52968812	52969831	0	1	1019	0
chr19	52968846	52969950	REMC_MyoepithelialBreast.76399	0	.	52968846	52969950	0	1	1104	0
chr19	52981649	52984138	REMC_MyoepithelialBreast.76404	0	.	52981649	52984138	0	1	2489	0
chr19	52983289	52984258	REMC_LuminalBreast.82495	0	.	52983289	52984258	0	1	969	0
chr19	52983524	52984065	B_Cells_Pritchard.2600263	0	+	52983524	52984065	0	1	541	0
chr19	52985193	52986261	REMC_LuminalBreast.82496	0	.	52985193	52986261	0	1	1068	0
chr19	53054315	53056581	pHIT000034104	0	+	53054315	53056581	0	4	25,170,285,180	0,866,1555,2086
chr19	53054315	53056581	pHIT000093776	0	+	53054315	53056581	0	3	25,170,180	0,866,2086
chr19	53056053	53056569	liver_polyA+.110589	0	.	53056053	53056569	0	1	516	0
chr19	53058494	53059194	HepG2_Caltech_ENCODE.31248	0	.	53058494	53059194	0	1	700	0
chr19	53108119	53150870	NR_024217	0	+	53108119	53150870	0	3	120,120,120	0,15767,42631
chr19	53307954	53308999	B_Cells_Pritchard.2600021	0	-	53307954	53308999	0	1	1045	0
chr19	53307979	53309182	REMC_LuminalBreast.82509	0	.	53307979	53309182	0	1	1203	0
chr19	53308006	53308962	MIP101.57786	0	.	53308006	53308962	0	1	956	0
chr19	53308011	53309109	melanoma_Garraway_short_term_cultures.57459	0	.	53308011	53309109	0	1	1098	0
chr19	53308036	53308988	H1_polyA+.96600	0	.	53308036	53308988	0	1	952	0
chr19	53308241	53308994	CD4_Plagnol_resting.53756	0	.	53308241	53308994	0	1	753	0
chr19	53454537	53454859	B_cells_Cheung.160216	0	.	53454537	53454859	0	1	322	0
chr19	53459087	53459685	H1_polyA+.96664	0	.	53459087	53459685	0	1	598	0
chr19	53485811	53486413	HeLa_polyA+_Chen.30511	0	.	53485811	53486413	0	1	602	0
chr19	53485901	53486480	H9_polyA+.37985	0	.	53485901	53486480	0	1	579	0
chr19	53485915	53486559	A549_Myers.72107	0	.	53485915	53486559	0	1	644	0
chr19	53575490	53575862	H1_polyA+.96710	0	.	53575490	53575862	0	1	372	0
chr19	53587670	53588112	CD4_Plagnol_activated.55421	0	.	53587670	53588112	0	1	442	0
chr19	53956039	53956526	B_Cells_Pritchard.2601581	0	-	53956039	53956526	0	1	487	0
chr19	54119440	54120240	BT20_Thompson.18673	0	.	54119440	54120240	0	1	800	0
chr19	54119440	54122494	B_cells_Cheung.160469	0	.	54119440	54122494	0	1	3054	0
chr19	54119442	54121082	melanoma_Garraway_short_term_cultures.57645	0	.	54119442	54121082	0	1	1640	0
chr19	54119445	54120225	CD4_Plagnol_activated.55488	0	.	54119445	54120225	0	1	780	0
chr19	54119445	54121162	CD4_Plagnol_resting.53953	0	.	54119445	54121162	0	1	1717	0
chr19	54119447	54120426	MDAMB231_Thompson.18772	0	.	54119447	54120426	0	1	979	0
chr19	54119451	54120287	K562.37933	0	.	54119451	54120287	0	1	836	0
chr19	54122021	54122360	CD4_Plagnol_activated.55492	0	.	54122021	54122360	0	1	339	0
chr19	54124757	54125296	REMC_BreastStem.45222	0	.	54124757	54125296	0	1	539	0
chr19	54124945	54125324	B_cells_Cheung.160473	0	.	54124945	54125324	0	1	379	0
chr19	54126240	54126940	B_cells_Cheung.160474	0	.	54126240	54126940	0	1	700	0
chr19	54126544	54126895	melanoma_Garraway_short_term_cultures.57649	0	.	54126544	54126895	0	1	351	0
chr19	54141682	54142867	REMC_MyoepithelialBreast.76439	0	.	54141682	54142867	0	1	1185	0
chr19	54260785	54261170	skeletal_muscle_Burge.25169	0	.	54260785	54261170	0	1	385	0
chr19	54408757	54409318	REMC_LuminalBreast.82659	0	.	54408757	54409318	0	1	561	0
chr19	54409442	54411770	REMC_LuminalBreast.82660	0	.	54409442	54411770	0	1	2328	0
chr19	54410871	54411639	H1_polyA+.96862	0	.	54410871	54411639	0	1	768	0
chr19	54412226	54413287	REMC_LuminalBreast.82661	0	.	54412226	54413287	0	1	1061	0
chr19	54412271	54413508	H1_polyA+.96863	0	.	54412271	54413508	0	1	1237	0
chr19	54413651	54416430	H1_polyA+.96864	0	.	54413651	54416430	0	1	2779	0
chr19	54418147	54419277	REMC_LuminalBreast.82663	0	.	54418147	54419277	0	1	1130	0
chr19	54418178	54419052	H1_polyA+.96866	0	.	54418178	54419052	0	1	874	0
chr19	54424362	54426372	H1_polyA+.96871	0	.	54424362	54426372	0	1	2010	0
chr19	54424532	54424988	liver_polyA+.110636	0	.	54424532	54424988	0	1	456	0
chr19	54424596	54424941	BT474_Burge_Thompson.29679	0	.	54424596	54424941	0	1	345	0
chr19	54425888	54428418	REMC_LuminalBreast.82666	0	.	54425888	54428418	0	1	2530	0
chr19	54429592	54430311	liver_polyA+.110638	0	.	54429592	54430311	0	1	719	0
chr19	54429677	54430294	BT474_Burge_Thompson.29680	0	.	54429677	54430294	0	1	617	0
chr19	54429700	54430231	A549_Myers.72364	0	.	54429700	54430231	0	1	531	0
chr19	54429716	54430298	prostate_normal.49918	0	.	54429716	54430298	0	1	582	0
chr19	54431709	54432565	REMC_LuminalBreast.82668	0	.	54431709	54432565	0	1	856	0
chr19	54432769	54436489	REMC_LuminalBreast.82669	0	.	54432769	54436489	0	1	3720	0
chr19	54432771	54433177	H1_polyA+.96874	0	.	54432771	54433177	0	1	406	0
chr19	54436672	54443104	REMC_LuminalBreast.82658	0	.	54436672	54443104	0	1	6432	0
chr19	54437010	54451518	prostate_carcinoma.83597	0	-	54437010	54451518	0	2	136,1449	0,13059
chr19	54449600	54452871	REMC_LuminalBreast.82672	0	.	54449600	54452871	0	1	3271	0
chr19	54449624	54451512	H1_polyA+.96883	0	.	54449624	54451512	0	1	1888	0
chr19	54450089	54450958	BT474_Burge_Thompson.29684	0	.	54450089	54450958	0	1	869	0
chr19	54450106	54451647	prostate_normal.49925	0	.	54450106	54451647	0	1	1541	0
chr19	54451754	54452126	prostate_normal.49926	0	.	54451754	54452126	0	1	372	0
chr19	54453068	54456288	REMC_LuminalBreast.82673	0	.	54453068	54456288	0	1	3220	0
chr19	54456523	54461739	REMC_LuminalBreast.82674	0	.	54456523	54461739	0	1	5216	0
chr19	54461852	54463520	REMC_LuminalBreast.82675	0	.	54461852	54463520	0	1	1668	0
chr19	54481841	54483449	REMC_LuminalBreast.82677	0	.	54481841	54483449	0	1	1608	0
chr19	54576462	54576868	melanoma_Garraway_short_term_cultures.57732	0	.	54576462	54576868	0	1	406	0
chr19	54822530	54822981	brain_AmbionMAQC.37893	0	.	54822530	54822981	0	1	451	0
chr19	54823963	54825499	REMC_MyoepithelialBreast.76628	0	.	54823963	54825499	0	1	1536	0
chr19	54824117	54824832	melanoma_Garraway_short_term_cultures.57775	0	.	54824117	54824832	0	1	715	0
chr19	54824143	54825308	ZR751_Thompson.20684	0	.	54824143	54825308	0	1	1165	0
chr19	54824167	54826559	CD4_Plagnol_activated.55617	0	.	54824167	54826559	0	1	2392	0
chr19	54824272	54825305	HeLa_polyA+_Chen.30627	0	.	54824272	54825305	0	1	1033	0
chr19	54824307	54826813	CD4_Plagnol_resting.54017	0	+	54824307	54826813	0	2	599,13	0,2493
chr19	54824324	54825452	REMC_LuminalBreast.82739	0	.	54824324	54825452	0	1	1128	0
chr19	54824349	54825609	BT20_Thompson.18733	0	.	54824349	54825609	0	1	1260	0
chr19	54824530	54825617	B_Cells_Pritchard.2603109	0	+	54824530	54825617	0	1	1087	0
chr19	54824586	54825307	MDAMB468_Thompson.20857	0	.	54824586	54825307	0	1	721	0
chr19	54826752	54827364	ZR751_Thompson.20685	0	.	54826752	54827364	0	1	612	0
chr19	54826754	54827417	HeLa_polyA+_Chen.30632	0	.	54826754	54827417	0	1	663	0
chr19	54827515	54828630	HeLa_polyA+_Chen.30633	0	.	54827515	54828630	0	1	1115	0
chr19	54827534	54828592	REMC_MyoepithelialBreast.76631	0	.	54827534	54828592	0	1	1058	0
chr19	54827545	54828647	B_Cells_Pritchard.2603115	0	+	54827545	54828647	0	1	1102	0
chr19	54827558	54828581	melanoma_Garraway_short_term_cultures.57779	0	.	54827558	54828581	0	1	1023	0
chr19	54827558	54828645	CD4_Plagnol_activated.55619	0	.	54827558	54828645	0	1	1087	0
chr19	54827598	54828646	BT20_Thompson.18736	0	.	54827598	54828646	0	1	1048	0
chr19	54827787	54828648	ZR751_Thompson.20687	0	.	54827787	54828648	0	1	861	0
chr19	54827818	54828584	MCF7_Burge_Thompson.27365	0	.	54827818	54828584	0	1	766	0
chr19	54828005	54828580	H9_polyA+.38151	0	.	54828005	54828580	0	1	575	0
chr19	55158231	55158917	REMC_BreastStem.42073	0	.	55158231	55158917	0	1	686	0
chr19	55250782	55251320	prostate_normal.49948	0	.	55250782	55251320	0	1	538	0
chr19	55250806	55251855	B_cells_Cheung.160747	0	.	55250806	55251855	0	1	1049	0
chr19	55256830	55261774	B_Cells_Pritchard.2603761	0	-	55256830	55261774	0	2	904,1449	0,3495
chr19	55260165	55261696	B_cells_Cheung.160752	0	.	55260165	55261696	0	1	1531	0
chr19	55261095	55261710	brain_AmbionMAQC.37947	0	.	55261095	55261710	0	1	615	0
chr19	55263611	55264819	prostate_carcinoma.83104	0	+	55263611	55264819	0	2	94,353	0,855
chr19	55267173	55267696	prostate_carcinoma.83106	0	.	55267173	55267696	0	1	523	0
chr19	55382143	55383110	REMC_LuminalBreast.82818	0	.	55382143	55383110	0	1	967	0
chr19	55679807	55680204	NEC_from_H9.63843	0	.	55679807	55680204	0	1	397	0
chr19	55679811	55695887	A549_Myers.72563	0	-	55679811	55695887	0	2	1021,13	0,16063
chr19	55679811	55681033	A549_Myers.72564	0	.	55679811	55681033	0	1	1222	0
chr19	55679975	55681932	HIT000015360	0	+	55679975	55681932	0	1	1957	0
chr19	55680168	55681167	MCF7_Burge_Thompson.27469	0	.	55680168	55681167	0	1	999	0
chr19	55680172	55680855	MeWo_Garraway.31155	0	.	55680172	55680855	0	1	683	0
chr19	55680178	55681336	MDAMB231_Thompson.18822	0	.	55680178	55681336	0	1	1158	0
chr19	55680223	55681377	K562.38102	0	.	55680223	55681377	0	1	1154	0
chr19	55680226	55681115	testes_Burge.45850	0	.	55680226	55681115	0	1	889	0
chr19	55681388	55683179	brain_AmbionMAQC.38026	0	.	55681388	55683179	0	1	1791	0
chr19	55681448	55682574	H9_polyA+.38234	0	.	55681448	55682574	0	1	1126	0
chr19	55681468	55681994	MCF7_Burge_Thompson.27470	0	.	55681468	55681994	0	1	526	0
chr19	55681468	55682118	BT20_Thompson.18825	0	.	55681468	55682118	0	1	650	0
chr19	55681468	55682069	melanoma_Garraway_short_term_cultures.57875	0	.	55681468	55682069	0	1	601	0
chr19	55681470	55683107	CD4_Plagnol_resting.54468	0	.	55681470	55683107	0	1	1637	0
chr19	55681541	55682613	liver_polyA+.110862	0	.	55681541	55682613	0	1	1072	0
chr19	55681806	55683093	HeLa_polyA+_Chen.30685	0	.	55681806	55683093	0	1	1287	0
chr19	55681938	55683126	K562.38104	0	.	55681938	55683126	0	1	1188	0
chr19	55682339	55683100	MCF7_Burge_Thompson.27471	0	.	55682339	55683100	0	1	761	0
chr19	55682632	55683044	H9_polyA+.38235	0	.	55682632	55683044	0	1	412	0
chr19	55682665	55683092	breast_Burge.35444	0	.	55682665	55683092	0	1	427	0
chr19	55682691	55683101	colon_Burge.32893	0	.	55682691	55683101	0	1	410	0
chr19	55682723	55683092	testes_Burge.45851	0	.	55682723	55683092	0	1	369	0
chr19	55682743	55683085	liver_polyA+.110865	0	.	55682743	55683085	0	1	342	0
chr19	55682760	55683072	colon_Raymond.103046	0	.	55682760	55683072	0	1	312	0
chr19	55682841	55693406	heart_Raymond.50463	0	+	55682841	55693406	0	3	213,61,115	0,979,10450
chr19	55683361	55685173	ZR751_Thompson.20751	0	.	55683361	55685173	0	1	1812	0
chr19	55683367	55686255	REMC_LuminalBreast.82873	0	.	55683367	55686255	0	1	2888	0
chr19	55683387	55684293	testes_Burge.45852	0	.	55683387	55684293	0	1	906	0
chr19	55683390	55685130	liver_polyA+.110868	0	-	55683390	55685130	0	2	770,802	0,938
chr19	55683390	55685130	liver_polyA+.110867	0	+	55683390	55685130	0	3	256,447,811	0,428,929
chr19	55683390	55684265	liver_polyA+.110866	0	.	55683390	55684265	0	1	875	0
chr19	55683390	55689043	brain_AmbionMAQC.38027	0	.	55683390	55689043	0	1	5653	0
chr19	55683392	55684569	kidney_Gilad.71724	0	-	55683392	55684569	0	2	768,241	0,936
chr19	55683392	55687353	REMC_MyoepithelialBreast.76664	0	.	55683392	55687353	0	1	3961	0
chr19	55683392	55684569	kidney_Gilad.71723	0	+	55683392	55684569	0	3	254,428,250	0,426,927
chr19	55683402	55684594	skeletal_muscle_Raymond.78564	0	.	55683402	55684594	0	1	1192	0
chr19	55683411	55684488	lymph_node_Burge.43700	0	.	55683411	55684488	0	1	1077	0
chr19	55683418	55684253	testes_Raymond.138073	0	.	55683418	55684253	0	1	835	0
chr19	55683418	55693981	testes_Raymond.138072	0	-	55683418	55693981	0	2	742,52	0,10511
chr19	55683423	55685199	MCF7_Burge_Thompson.27473	0	.	55683423	55685199	0	1	1776	0
chr19	55683547	55689437	MB435_Burge.37403	0	+	55683547	55689437	0	2	562,19	0,5871
chr19	55683625	55684255	colon_Raymond.103042	0	.	55683625	55684255	0	1	630	0
chr19	55683662	55684709	colon_Burge.32895	0	.	55683662	55684709	0	1	1047	0
chr19	55683674	55692330	kidney_Raymond.81994	0	+	55683674	55692330	0	3	332,110,13	0,1188,8643
chr19	55683680	55684255	ovary_Raymond.203227	0	.	55683680	55684255	0	1	575	0
chr19	55683687	55685173	H9_polyA+.38236	0	.	55683687	55685173	0	1	1486	0
chr19	55683790	55684715	K562.38105	0	.	55683790	55684715	0	1	925	0
chr19	55684043	55685184	skeletal_muscle_Burge.25386	0	.	55684043	55685184	0	3	243,364,418	0,304,723
chr19	55684147	55685162	HeLa_polyA+_Chen.30686	0	.	55684147	55685162	0	1	1015	0
chr19	55684349	55685137	testes_Burge.45853	0	.	55684349	55685137	0	1	788	0
chr19	55684383	55685115	T47D_Burge_Thompson.25316	0	.	55684383	55685115	0	1	732	0
chr19	55684488	55685141	lymph_node_Burge.43703	0	.	55684488	55685141	0	1	653	0
chr19	55684747	55685073	colon_Raymond.103048	0	.	55684747	55685073	0	1	326	0
chr19	55684749	55685115	kidney_Gilad.71721	0	.	55684749	55685115	0	1	366	0
chr19	55684788	55685162	colon_Burge.32896	0	.	55684788	55685162	0	1	374	0
chr19	55684808	55685131	HME_Burge.35527	0	.	55684808	55685131	0	1	323	0
chr19	55685322	55686279	H1_polyA+.97083	0	.	55685322	55686279	0	1	957	0
chr19	55685429	55685795	H9_polyA+.38237	0	.	55685429	55685795	0	1	366	0
chr19	55685454	55685892	liver_polyA+.110869	0	.	55685454	55685892	0	1	438	0
chr19	55685509	55686272	MCF7_Burge_Thompson.27474	0	.	55685509	55686272	0	1	763	0
chr19	55686001	55686381	HeLa_polyA+_Chen.30688	0	.	55686001	55686381	0	1	380	0
chr19	55686323	55686754	A549_Myers.72567	0	.	55686323	55686754	0	1	431	0
chr19	55686398	55687329	MCF7_Burge_Thompson.27472	0	.	55686398	55687329	0	1	931	0
chr19	55686403	55689530	colon_Burge.32898	0	+	55686403	55689530	0	2	454,66	0,3061
chr19	55686403	55687097	colon_Burge.32897	0	.	55686403	55687097	0	1	694	0
chr19	55686409	55687129	MIP101.58054	0	.	55686409	55687129	0	1	720	0
chr19	55686425	55687264	REMC_LuminalBreast.82874	0	.	55686425	55687264	0	1	839	0
chr19	55686473	55686846	colon_Raymond.103043	0	.	55686473	55686846	0	1	373	0
chr19	55686509	55687124	HeLa_polyA+_Chen.30689	0	.	55686509	55687124	0	1	615	0
chr19	55686549	55687113	lung_Raymond.72970	0	.	55686549	55687113	0	1	564	0
chr19	55686767	55687104	liver_polyA+.110870	0	.	55686767	55687104	0	1	337	0
chr19	55686956	55687287	HME_Burge.35530	0	.	55686956	55687287	0	1	331	0
chr19	55687390	55687825	MCF7_Burge_Thompson.27475	0	.	55687390	55687825	0	1	435	0
chr19	55688145	55689038	CD4_Plagnol_resting.54469	0	.	55688145	55689038	0	1	893	0
chr19	55688164	55688688	REMC_LuminalBreast.82875	0	.	55688164	55688688	0	1	524	0
chr19	55688166	55688717	skeletal_muscle_Burge.25387	0	.	55688166	55688717	0	1	551	0
chr19	55688175	55688666	H1_polyA+.97084	0	.	55688175	55688666	0	1	491	0
chr19	55688191	55688694	breast_Burge.35430	0	.	55688191	55688694	0	1	503	0
chr19	55688795	55691005	REMC_LuminalBreast.82877	0	.	55688795	55691005	0	1	2210	0
chr19	55689294	55689601	prostate_normal.49998	0	.	55689294	55689601	0	1	307	0
chr19	55689334	55694735	skeletal_muscle_Raymond.78566	0	-	55689334	55694735	0	2	1169,62	0,5339
chr19	55689496	55690548	REMC_MyoepithelialBreast.76665	0	.	55689496	55690548	0	1	1052	0
chr19	55689561	55689965	HeLa_polyA+_Chen.30690	0	.	55689561	55689965	0	1	404	0
chr19	55689629	55693686	breast_Burge.35432	0	+	55689629	55693686	0	2	381,68	0,3989
chr19	55689629	55690192	breast_Burge.35431	0	.	55689629	55690192	0	1	563	0
chr19	55691105	55693840	brain_AmbionMAQC.38029	0	.	55691105	55693840	0	1	2735	0
chr19	55691120	55693923	CD4_Plagnol_activated.55813	0	.	55691120	55693923	0	1	2803	0
chr19	55691396	55691706	liver_polyA+.110872	0	.	55691396	55691706	0	1	310	0
chr19	55691691	55695915	CD4_Plagnol_resting.54471	0	+	55691691	55695915	0	2	2075,1891	0,2333
chr19	55691770	55692544	MCF7_Burge_Thompson.27476	0	.	55691770	55692544	0	1	774	0
chr19	55692390	55693604	testes_Raymond.138074	0	.	55692390	55693604	0	1	1214	0
chr19	55692469	55693775	colon_Raymond.103044	0	.	55692469	55693775	0	1	1306	0
chr19	55693191	55693931	H1_polyA+.97086	0	.	55693191	55693931	0	1	740	0
chr19	55693204	55693691	prostate_normal.49999	0	.	55693204	55693691	0	1	487	0
chr19	55693344	55693679	B_Cells_Pritchard.2604941	0	-	55693344	55693679	0	1	335	0
chr19	55693969	55694315	brain_AmbionMAQC.38030	0	.	55693969	55694315	0	1	346	0
chr19	55694799	55697151	CD4_Plagnol_activated.55815	0	.	55694799	55697151	0	1	2352	0
chr19	55694880	55695437	brain_AmbionMAQC.38031	0	.	55694880	55695437	0	1	557	0
chr19	55694973	55695545	H1_polyA+.97087	0	.	55694973	55695545	0	1	572	0
chr19	55694987	55695557	ZR751_Thompson.20752	0	.	55694987	55695557	0	1	570	0
chr19	55695263	55695726	A549_Myers.72568	0	.	55695263	55695726	0	1	463	0
chr19	55695973	55697191	CD4_Plagnol_resting.54473	0	.	55695973	55697191	0	1	1218	0
chr19	55695979	55696955	REMC_LuminalBreast.82880	0	.	55695979	55696955	0	1	976	0
chr19	55696014	55696360	prostate_normal.50000	0	.	55696014	55696360	0	1	346	0
chr19	55696016	55696945	A549_Myers.72569	0	.	55696016	55696945	0	1	929	0
chr19	55696323	55696908	H1_polyA+.97088	0	.	55696323	55696908	0	1	585	0
chr19	55696446	55697498	prostate_normal.50001	0	.	55696446	55697498	0	1	1052	0
chr19	55697122	55697490	prostate_carcinoma.83117	0	.	55697122	55697490	0	1	368	0
chr19	55697156	55697758	REMC_LuminalBreast.82881	0	.	55697156	55697758	0	1	602	0
chr19	55698336	55699469	REMC_MyoepithelialBreast.76648	0	.	55698336	55699469	0	1	1133	0
chr19	55698342	55698909	B_cells_Cheung.160812	0	.	55698342	55698909	0	1	567	0
chr19	55698423	55699071	REMC_LuminalBreast.82882	0	.	55698423	55699071	0	1	648	0
chr19	55775109	55775526	B_Cells_Pritchard.2605185	0	.	55775109	55775526	0	1	417	0
chr19	55802187	55803048	H1_polyA+.97073	0	.	55802187	55803048	0	1	861	0
chr19	55802297	55803004	brain_AmbionMAQC.37980	0	.	55802297	55803004	0	1	707	0
chr19	55803210	55803526	K562.38119	0	.	55803210	55803526	0	1	316	0
chr19	55840952	55841463	A549_Myers.72601	0	.	55840952	55841463	0	1	511	0
chr19	55915280	55915744	A549_Myers.72628	0	.	55915280	55915744	0	1	464	0
chr19	55936067	55936745	B_Cells_Pritchard.2605657	0	+	55936067	55936745	0	1	678	0
chr19	55971202	55979128	H1_polyA+.97119	0	+	55971202	55979128	0	2	20,730	0,7196
chr19	55971780	55973842	REMC_MyoepithelialBreast.76686	0	.	55971780	55973842	0	1	2062	0
chr19	55972104	55979426	REMC_LuminalBreast.82895	0	.	55972104	55979426	0	1	7322	0
chr19	55972951	55973734	melanoma_Garraway_short_term_cultures.57901	0	.	55972951	55973734	0	1	783	0
chr19	55973967	55975634	melanoma_Garraway_short_term_cultures.57902	0	.	55973967	55975634	0	1	1667	0
chr19	55975869	55976443	B_cells_Cheung.160835	0	.	55975869	55976443	0	1	574	0
chr19	55979601	55980011	CD4_Plagnol_activated.55783	0	.	55979601	55980011	0	1	410	0
chr19	55979660	55980093	melanoma_Garraway_short_term_cultures.57904	0	.	55979660	55980093	0	1	433	0
chr19	55980270	55981370	CD4_Plagnol_activated.55784	0	.	55980270	55981370	0	1	1100	0
chr19	56007226	56008461	B_Cells_Pritchard.2605855	0	.	56007226	56008461	0	1	1235	0
chr19	56280320	56280697	HeLa_polyA+_Chen.30711	0	.	56280320	56280697	0	1	377	0
chr19	56280368	56280707	prostate_normal.50025	0	.	56280368	56280707	0	1	339	0
chr19	56283290	56286669	B_cells_Cheung.160876	0	.	56283290	56286669	0	1	3379	0
chr19	56283310	56286663	REMC_LuminalBreast.82934	0	.	56283310	56286663	0	1	3353	0
chr19	56283318	56286685	REMC_MyoepithelialBreast.76696	0	.	56283318	56286685	0	1	3367	0
chr19	56283846	56286714	H1_polyA+.97161	0	.	56283846	56286714	0	1	2868	0
chr19	56283894	56286665	melanoma_Garraway_short_term_cultures.57922	0	.	56283894	56286665	0	1	2771	0
chr19	56283910	56285438	prostate_carcinoma.83274	0	.	56283910	56285438	0	1	1528	0
chr19	56283919	56285327	HeLa_polyA+_Chen.30721	0	.	56283919	56285327	0	1	1408	0
chr19	56283964	56285263	CD4_Plagnol_activated.55801	0	.	56283964	56285263	0	1	1299	0
chr19	56284003	56286660	REMC_BreastStem.42130	0	.	56284003	56286660	0	1	2657	0
chr19	56284069	56284846	MCF7_Burge_Thompson.27500	0	.	56284069	56284846	0	1	777	0
chr19	56285119	56286681	MCF7_Burge_Thompson.27501	0	.	56285119	56286681	0	1	1562	0
chr19	56285339	56286688	CD4_Plagnol_activated.55802	0	.	56285339	56286688	0	1	1349	0
chr19	56285544	56286639	prostate_carcinoma.83275	0	.	56285544	56286639	0	1	1095	0
chr19	56285585	56286269	A549_Myers.72681	0	.	56285585	56286269	0	1	684	0
chr19	56285588	56286669	prostate_normal.50029	0	.	56285588	56286669	0	1	1081	0
chr19	56285593	56286498	HeLa_polyA+_Chen.30722	0	.	56285593	56286498	0	1	905	0
chr19	56285786	56286677	CD4_Plagnol_resting.54180	0	.	56285786	56286677	0	1	891	0
chr19	56286958	56291245	B_cells_Cheung.160877	0	.	56286958	56291245	0	1	4287	0
chr19	56286959	56287716	CD4_Plagnol_activated.55803	0	.	56286959	56287716	0	1	757	0
chr19	56286959	56287283	HeLa_polyA+_Chen.30723	0	.	56286959	56287283	0	1	324	0
chr19	56286960	56290692	CD4_Plagnol_resting.54181	0	.	56286960	56290692	0	1	3732	0
chr19	56287044	56288610	melanoma_Garraway_short_term_cultures.57923	0	.	56287044	56288610	0	1	1566	0
chr19	56287089	56289297	H1_polyA+.97162	0	.	56287089	56289297	0	1	2208	0
chr19	56287292	56288146	MIP101.58094	0	.	56287292	56288146	0	1	854	0
chr19	56287373	56289612	REMC_LuminalBreast.82935	0	.	56287373	56289612	0	1	2239	0
chr19	56287402	56288448	prostate_normal.50030	0	.	56287402	56288448	0	1	1046	0
chr19	56287473	56289993	REMC_BreastStem.42131	0	.	56287473	56289993	0	1	2520	0
chr19	56287756	56288395	MCF7_Burge_Thompson.27502	0	.	56287756	56288395	0	1	639	0
chr19	56287831	56288333	CD4_Plagnol_activated.55804	0	.	56287831	56288333	0	1	502	0
chr19	56288400	56290015	CD4_Plagnol_activated.55805	0	.	56288400	56290015	0	1	1615	0
chr19	56288788	56290250	A549_Myers.72683	0	.	56288788	56290250	0	1	1462	0
chr19	56288808	56289993	brain_AmbionMAQC.38014	0	.	56288808	56289993	0	1	1185	0
chr19	56288888	56289665	HeLa_polyA+_Chen.30726	0	.	56288888	56289665	0	1	777	0
chr19	56288896	56289220	MCF7_Burge_Thompson.27503	0	.	56288896	56289220	0	1	324	0
chr19	56288942	56290048	melanoma_Garraway_short_term_cultures.57924	0	.	56288942	56290048	0	1	1106	0
chr19	56289202	56289748	prostate_normal.50031	0	.	56289202	56289748	0	1	546	0
chr19	56289336	56289666	MCF7_Burge_Thompson.27504	0	.	56289336	56289666	0	1	330	0
chr19	56289370	56291459	H1_polyA+.97163	0	.	56289370	56291459	0	1	2089	0
chr19	56307350	56307701	A549_Myers.72688	0	.	56307350	56307701	0	1	351	0
chr19	56414471	56417871	B_cells_Cheung.160897	0	.	56414471	56417871	0	1	3400	0
chr19	56414737	56416466	HeLa_polyA+_Chen.30718	0	.	56414737	56416466	0	1	1729	0
chr19	56437629	56438781	B_Cells_Pritchard.2607159	0	.	56437629	56438781	0	1	1152	0
chr19	56474332	56476309	testes_Burge.45798	0	+	56474332	56476309	0	2	34,410	0,1567
chr19	56474387	56477855	pHIT000034490	0	+	56474387	56477855	0	4	19,354,264,302	0,1512,2564,3166
chr19	56474387	56488983	pHIT000120428	0	+	56474387	56488983	0	5	19,354,264,103,140	0,1512,2564,3598,14456
chr19	56489656	56490241	H9_polyA+.38282	0	.	56489656	56490241	0	1	585	0
chr19	56489936	56490264	A549_Myers.72699	0	.	56489936	56490264	0	1	328	0
chr19	56491348	56494739	H1_polyA+.97184	0	.	56491348	56494739	0	1	3391	0
chr19	56495468	56497194	H1_polyA+.97185	0	.	56495468	56497194	0	1	1726	0
chr19	56498195	56499290	H1_polyA+.97186	0	.	56498195	56499290	0	1	1095	0
chr19	56589472	56590247	MIP101.58118	0	.	56589472	56590247	0	1	775	0
chr19	56592357	56596022	H1_polyA+.97226	0	.	56592357	56596022	0	1	3665	0
chr19	56595330	56596036	B_Cells_Pritchard.2607591	0	.	56595330	56596036	0	1	706	0
chr19	56595377	56595980	K562.38161	0	.	56595377	56595980	0	1	603	0
chr19	56600370	56602169	B_cells_Cheung.160929	0	.	56600370	56602169	0	1	1799	0
chr19	56600371	56604263	B_Cells_Pritchard.2607883	0	+	56600371	56604263	0	2	1775,127	0,3765
chr19	56600706	56602181	H1_polyA+.97227	0	.	56600706	56602181	0	1	1475	0
chr19	56600782	56601882	K562.38164	0	.	56600782	56601882	0	1	1100	0
chr19	56601332	56601860	MIP101.58128	0	.	56601332	56601860	0	1	528	0
chr19	56601662	56602064	H1_rRNA-depleted_UCSD_REMC.72816	0	.	56601662	56602064	0	1	402	0
chr19	58789283	58790408	B_Cells_Pritchard.2612173	0	.	58789283	58790408	0	1	1125	0
chr19	58840433	58840757	MIP101.58335	0	.	58840433	58840757	0	1	324	0
chr19	58867111	58867961	H1_polyA+.97557	0	.	58867111	58867961	0	1	850	0
chr19	58874376	58874858	H9_polyA-_Chen.12411	0	.	58874376	58874858	0	1	482	0
chr19	58875213	58876539	H1_polyA+.97561	0	.	58875213	58876539	0	1	1326	0
chr19	58877820	58878343	H1_rRNA-depleted_UCSD_REMC.73184	0	.	58877820	58878343	0	1	523	0
chr19	58878731	58879808	H1_polyA+.97563	0	.	58878731	58879808	0	1	1077	0
chr19	58890798	58892227	H1_polyA+.97564	0	.	58890798	58892227	0	1	1429	0
chr19	59026832	59028541	H1_polyA+.97661	0	+	59026832	59028541	0	2	236,513	0,1196
chr19	59027152	59027828	H9_polyA+.38614	0	.	59027152	59027828	0	1	676	0
chr19	59041591	59043911	REMC_LuminalBreast.83250	0	.	59041591	59043911	0	1	2320	0
chr19	59042243	59043185	REMC_MyoepithelialBreast.77027	0	.	59042243	59043185	0	1	942	0
chr19	59042467	59043060	prostate_carcinoma.83646	0	.	59042467	59043060	0	1	593	0
chr19	59048618	59050030	HIT000014583	0	+	59048618	59050030	0	1	1412	0
chr19	59048874	59050185	REMC_MyoepithelialBreast.77131	0	.	59048874	59050185	0	1	1311	0
chr19	59056986	59057357	H1_polyA+.97682	0	.	59056986	59057357	0	1	371	0
chr19	59103774	59104302	H1_rRNA-depleted_UCSD_REMC.73215	0	.	59103774	59104302	0	1	528	0
chr19	59146559	59147311	brain_AmbionMAQC.38372	0	.	59146559	59147311	0	1	752	0
chr19	59146568	59146890	NEC_from_H9.64245	0	.	59146568	59146890	0	1	322	0
chr19	59146607	59147306	H9_polyA+.38639	0	.	59146607	59147306	0	1	699	0
chr19	59153633	59154194	B_Cells_Pritchard.2613471	0	.	59153633	59154194	0	1	561	0
chr19	59153663	59154174	brain_AmbionMAQC.38360	0	.	59153663	59154174	0	1	511	0
chr19	59154262	59154896	brain_AmbionMAQC.38361	0	.	59154262	59154896	0	1	634	0
chr19	59155275	59155763	A549_Myers.72917	0	.	59155275	59155763	0	1	488	0
chr19	59216489	59216836	A549_Myers.72927	0	.	59216489	59216836	0	1	347	0
chr19	59328429	59329819	H1_polyA+.98083	0	.	59328429	59329819	0	1	1390	0
chr19	59392260	59393342	REMC_MyoepithelialBreast.77056	0	.	59392260	59393342	0	1	1082	0
chr19	59392864	59393285	B_cells_Cheung.162951	0	.	59392864	59393285	0	1	421	0
chr19	59546889	59547491	B_Cells_Pritchard.2614327	0	.	59546889	59547491	0	1	602	0
chr19	59548576	59549182	B_cells_Cheung.161918	0	.	59548576	59549182	0	1	606	0
chr19	59549340	59552777	B_cells_Cheung.161919	0	.	59549340	59552777	0	1	3437	0
chr19	59549785	59550190	B_Cells_Pritchard.2614339	0	.	59549785	59550190	0	1	405	0
chr19	59580131	59580613	B_cells_Cheung.161932	0	.	59580131	59580613	0	1	482	0
chr19	59583885	59584647	BT474_Burge_Thompson.30145	0	.	59583885	59584647	0	1	762	0
chr19	59591703	59592227	B_cells_Cheung.161933	0	.	59591703	59592227	0	1	524	0
chr19	59640774	59641215	CD4_Plagnol_activated.56210	0	.	59640774	59641215	0	1	441	0
chr19	59643044	59646639	B_cells_Cheung.161945	0	.	59643044	59646639	0	1	3595	0
chr19	59643150	59643550	brain_AmbionMAQC.38548	0	.	59643150	59643550	0	1	400	0
chr19	59645757	59646624	REMC_LuminalBreast.83356	0	.	59645757	59646624	0	1	867	0
chr19	59645824	59646664	REMC_MyoepithelialBreast.77078	0	.	59645824	59646664	0	1	840	0
chr19	59645944	59646613	HepG2_Caltech_ENCODE.31744	0	.	59645944	59646613	0	1	669	0
chr19	59645989	59646549	CD4_Plagnol_activated.56215	0	.	59645989	59646549	0	1	560	0
chr19	59646119	59646524	brain_AmbionMAQC.38552	0	.	59646119	59646524	0	1	405	0
chr19	59646153	59646551	CD4_Plagnol_resting.54658	0	.	59646153	59646551	0	1	398	0
chr19	59646245	59646590	K562.38554	0	.	59646245	59646590	0	1	345	0
chr19	59646251	59646585	melanoma_Garraway_short_term_cultures.58332	0	.	59646251	59646585	0	1	334	0
chr19	59647194	59648295	B_cells_Cheung.161947	0	.	59647194	59648295	0	1	1101	0
chr19	59647252	59648289	HeLa_polyA+_Chen.30928	0	.	59647252	59648289	0	1	1037	0
chr19	59647585	59649390	REMC_MyoepithelialBreast.77079	0	.	59647585	59649390	0	1	1805	0
chr19	59648479	59649293	HeLa_polyA+_Chen.30929	0	.	59648479	59649293	0	1	814	0
chr19	59648504	59649270	brain_AmbionMAQC.38554	0	.	59648504	59649270	0	1	766	0
chr19	59648504	59649308	BT20_Thompson.19043	0	.	59648504	59649308	0	1	804	0
chr19	59648509	59649336	H1_polyA+.97771	0	.	59648509	59649336	0	1	827	0
chr19	59648518	59649250	HepG2_Caltech_ENCODE.31747	0	.	59648518	59649250	0	1	732	0
chr19	59648520	59649246	K562.38566	0	.	59648520	59649246	0	1	726	0
chr19	59648530	59649236	melanoma_Garraway_short_term_cultures.58335	0	.	59648530	59649236	0	1	706	0
chr19	59648533	59648984	A549_Myers.72966	0	.	59648533	59648984	0	1	451	0
chr19	59648540	59648938	CD4_Snyder.61459	0	.	59648540	59648938	0	1	398	0
chr19	59648544	59649370	H9_polyA+.38701	0	.	59648544	59649370	0	1	826	0
chr19	59648550	59649255	MCF7_Burge_Thompson.34028	0	.	59648550	59649255	0	1	705	0
chr19	59648554	59649219	REMC_BreastStem.42367	0	.	59648554	59649219	0	1	665	0
chr19	59648556	59649237	CD4_Plagnol_resting.54750	0	.	59648556	59649237	0	1	681	0
chr19	59648577	59649515	MCF10A_Thompson.18547	0	.	59648577	59649515	0	1	938	0
chr19	59648577	59649244	CD4_Plagnol_activated.56218	0	.	59648577	59649244	0	1	667	0
chr19	59648591	59648894	NEC_from_H9.64362	0	.	59648591	59648894	0	1	303	0
chr19	59648746	59649252	BT474_Burge_Thompson.30155	0	.	59648746	59649252	0	1	506	0
chr19	59725936	59726395	B_Cells_Pritchard.2614733	0	.	59725936	59726395	0	1	459	0
chr19	59727905	59728526	B_Cells_Pritchard.2614741	0	.	59727905	59728526	0	1	621	0
chr19	60119750	60120636	H1_polyA+.97733	0	.	60119750	60120636	0	1	886	0
chr19	60123319	60124015	H1_polyA+.97736	0	.	60123319	60124015	0	1	696	0
chr19	60123321	60123649	B_Cells_Pritchard.2615711	0	.	60123321	60123649	0	1	328	0
chr19	60206066	60212357	H1_polyA+.97801	0	+	60206066	60212357	0	2	560,254	0,6037
chr19	60206066	60207562	H1_polyA+.97802	0	.	60206066	60207562	0	1	1496	0
chr19	60210444	60211719	REMC_LuminalBreast.83314	0	.	60210444	60211719	0	1	1275	0
chr19	60212021	60212896	REMC_LuminalBreast.83315	0	.	60212021	60212896	0	1	875	0
chr19	60214225	60214886	H1_polyA+.97812	0	.	60214225	60214886	0	1	661	0
chr19	60214318	60214891	REMC_LuminalBreast.83316	0	.	60214318	60214891	0	1	573	0
chr19	60214320	60214864	REMC_MyoepithelialBreast.77090	0	.	60214320	60214864	0	1	544	0
chr19	60274184	60274651	A549_Myers.73010	0	.	60274184	60274651	0	1	467	0
chr19	60292144	60292549	HME_Burge.35801	0	.	60292144	60292549	0	1	405	0
chr19	60292550	60292857	liver_polyA+.111411	0	.	60292550	60292857	0	1	307	0
chr19	60292739	60293081	colon_Raymond.103467	0	.	60292739	60293081	0	1	342	0
chr19	60292739	60293071	ovary_Raymond.204124	0	.	60292739	60293071	0	1	332	0
chr19	60374382	60375275	BT20_Thompson.19033	0	.	60374382	60375275	0	1	893	0
chr19	60416427	60421467	REMC_LuminalBreast.83347	0	.	60416427	60421467	0	1	5040	0
chr19	60418401	60420803	HepG2_Caltech_ENCODE.32568	0	.	60418401	60420803	0	1	2402	0
chr19	60418474	60420541	K562.38557	0	.	60418474	60420541	0	1	2067	0
chr19	60418474	60420489	K562.38558	0	+	60418474	60420489	0	2	856,818	0,1197
chr19	60418485	60419399	REMC_BreastStem.42397	0	.	60418485	60419399	0	1	914	0
chr19	60418759	60419378	REMC_MyoepithelialBreast.77128	0	.	60418759	60419378	0	1	619	0
chr19	60419453	60421389	B_cells_Cheung.162086	0	.	60419453	60421389	0	1	1936	0
chr19	60419467	60420134	CD4_Plagnol_activated.56263	0	.	60419467	60420134	0	1	667	0
chr19	60419498	60420378	REMC_MyoepithelialBreast.77129	0	.	60419498	60420378	0	1	880	0
chr19	60419537	60420640	brain_AmbionMAQC.38440	0	.	60419537	60420640	0	1	1103	0
chr19	60419585	60420451	REMC_BreastStem.42398	0	.	60419585	60420451	0	1	866	0
chr19	60419688	60420446	melanoma_Garraway_short_term_cultures.58407	0	.	60419688	60420446	0	1	758	0
chr19	60419788	60420568	MeI_Garraway.15092	0	.	60419788	60420568	0	1	780	0
chr19	60419907	60420492	CD4_Plagnol_resting.54703	0	.	60419907	60420492	0	1	585	0
chr19	60420198	60420746	CD4_Plagnol_activated.56264	0	.	60420198	60420746	0	1	548	0
chr19	60422269	60428104	K562.38561	0	-	60422269	60428104	0	2	170,2274	0,3561
chr19	60422370	60427269	REMC_MyoepithelialBreast.77130	0	.	60422370	60427269	0	1	4899	0
chr19	60423043	60428116	REMC_LuminalBreast.83349	0	.	60423043	60428116	0	1	5073	0
chr19	60423175	60425492	B_cells_Cheung.162089	0	.	60423175	60425492	0	1	2317	0
chr19	60423180	60424793	CD4_Plagnol_activated.56267	0	.	60423180	60424793	0	1	1613	0
chr19	60423187	60425338	melanoma_Garraway_short_term_cultures.58408	0	.	60423187	60425338	0	1	2151	0
chr19	60423195	60424057	CD4_Plagnol_resting.54708	0	.	60423195	60424057	0	1	862	0
chr19	60425560	60428285	B_cells_Cheung.162090	0	.	60425560	60428285	0	1	2725	0
chr19	60425790	60428104	K562.38560	0	.	60425790	60428104	0	1	2314	0
chr19	60425848	60427720	melanoma_Garraway_short_term_cultures.58409	0	.	60425848	60427720	0	1	1872	0
chr19	60425853	60428076	CD4_Plagnol_activated.56268	0	.	60425853	60428076	0	1	2223	0
chr19	60425905	60426699	HeLa_polyA+_Chen.30947	0	.	60425905	60426699	0	1	794	0
chr19	60426207	60426955	MDAMB231_Thompson.19042	0	.	60426207	60426955	0	1	748	0
chr19	60426295	60427958	BT20_Thompson.19039	0	.	60426295	60427958	0	1	1663	0
chr19	60426570	60427567	REMC_BreastStem.42399	0	.	60426570	60427567	0	1	997	0
chr19	60427064	60427679	brain_AmbionMAQC.38442	0	.	60427064	60427679	0	1	615	0
chr19	60427160	60428088	A549_Myers.73072	0	.	60427160	60428088	0	1	928	0
chr19	60463496	60464044	B_Cells_Pritchard.2616511	0	-	60463496	60464044	0	1	548	0
chr19	60463499	60464349	B_cells_Cheung.162094	0	.	60463499	60464349	0	1	850	0
chr19	60539975	60541260	REMC_MyoepithelialBreast.77142	0	.	60539975	60541260	0	1	1285	0
chr19	60574984	60575812	HeLa_polyA+_Chen.30961	0	.	60574984	60575812	0	1	828	0
chr19	60575050	60576465	MDAMB468_Thompson.21226	0	.	60575050	60576465	0	1	1415	0
chr19	60575102	60576067	BT20_Thompson.19094	0	.	60575102	60576067	0	1	965	0
chr19	60575111	60575866	H1_polyA+.97938	0	.	60575111	60575866	0	1	755	0
chr19	60575116	60576021	brain_AmbionMAQC.38458	0	.	60575116	60576021	0	1	905	0
chr19	60575116	60575930	MCF10A_Thompson.18539	0	.	60575116	60575930	0	1	814	0
chr19	60575138	60575930	B_Cells_Pritchard.2616833	0	.	60575138	60575930	0	1	792	0
chr19	60575146	60575910	B_cells_Cheung.162133	0	.	60575146	60575910	0	1	764	0
chr19	60575155	60576385	MCF7_Burge_Thompson.27749	0	.	60575155	60576385	0	1	1230	0
chr19	60575319	60576380	ZR751_Thompson.20925	0	.	60575319	60576380	0	1	1061	0
chr19	60575888	60577674	HeLa_polyA+_Chen.30960	0	.	60575888	60577674	0	1	1786	0
chr19	60576695	60577226	MCF7_Burge_Thompson.27750	0	.	60576695	60577226	0	1	531	0
chr19	60576812	60578097	B_Cells_Pritchard.2616839	0	.	60576812	60578097	0	1	1285	0
chr19	60576852	60577688	BT20_Thompson.19095	0	.	60576852	60577688	0	1	836	0
chr19	60576893	60577596	MDAMB468_Thompson.21227	0	.	60576893	60577596	0	1	703	0
chr19	60576926	60578102	MCF10A_Thompson.18540	0	.	60576926	60578102	0	1	1176	0
chr19	60577342	60578103	MCF7_Burge_Thompson.27751	0	.	60577342	60578103	0	1	761	0
chr19	60577700	60578292	MDAMB468_Thompson.21228	0	.	60577700	60578292	0	1	592	0
chr19	60577752	60578134	HeLa_polyA+_Chen.30962	0	.	60577752	60578134	0	1	382	0
chr19	60612269	60613942	REMC_BreastStem.42531	0	.	60612269	60613942	0	1	1673	0
chr19	60612441	60616324	REMC_LuminalBreast.83373	0	.	60612441	60616324	0	1	3883	0
chr19	60612449	60613293	B_cells_Cheung.162177	0	.	60612449	60613293	0	1	844	0
chr19	60649665	60650055	brain_AmbionMAQC.38478	0	.	60649665	60650055	0	1	390	0
chr19	60650158	60652741	brain_AmbionMAQC.38476	0	.	60650158	60652741	0	1	2583	0
chr19	60650756	60651973	H1_polyA+.97946	0	.	60650756	60651973	0	1	1217	0
chr19	60650806	60651373	A549_Myers.73142	0	.	60650806	60651373	0	1	567	0
chr19	60651003	60651542	B_Cells_Pritchard.2617001	0	.	60651003	60651542	0	1	539	0
chr19	60651005	60651451	BT474_Burge_Thompson.30216	0	.	60651005	60651451	0	1	446	0
chr19	60651089	60651552	MCF7_Burge_Thompson.27747	0	.	60651089	60651552	0	1	463	0
chr19	60651505	60651818	BT474_Burge_Thompson.30217	0	.	60651505	60651818	0	1	313	0
chr19	60651691	60652476	B_Cells_Pritchard.2617003	0	-	60651691	60652476	0	2	409,239	0,546
chr19	60651842	60653045	A549_Myers.73143	0	-	60651842	60653045	0	3	79,115,598	0,143,605
chr19	60654775	60655138	brain_AmbionMAQC.38479	0	.	60654775	60655138	0	1	363	0
chr19	60665171	60665699	B_Cells_Pritchard.2617031	0	+	60665171	60665699	0	1	528	0
chr19	60666103	60668046	H9_polyA+.38786	0	-	60666103	60668046	0	2	1043,486	0,1457
chr19	60666570	60667445	MIP101.58464	0	.	60666570	60667445	0	1	875	0
chr19	60666650	60667733	pHIT000093085	0	-	60666650	60667733	0	2	496,173	0,910
chr19	60668753	60669118	A549_Myers.73148	0	.	60668753	60669118	0	1	365	0
chr19	60668863	60669654	B_Cells_Pritchard.2617047	0	.	60668863	60669654	0	1	791	0
chr19	60669611	60670077	MIP101.58466	0	.	60669611	60670077	0	1	466	0
chr19	60670429	60671443	MIP101.58467	0	.	60670429	60671443	0	1	1014	0
chr19	60727535	60729585	Rinn_00027424	0	-	60727535	60729585	0	2	836,157	0,1893
chr19	60729430	60730808	A549_Myers.73164	0	.	60729430	60730808	0	1	1378	0
chr19	60729855	60730395	H1_polyA+.97874	0	.	60729855	60730395	0	1	540	0
chr19	60730907	60731245	A549_Myers.73165	0	.	60730907	60731245	0	1	338	0
chr19	60730979	60731467	brain_AmbionMAQC.38489	0	.	60730979	60731467	0	1	488	0
chr19	60750271	60750869	A549_Myers.73172	0	.	60750271	60750869	0	1	598	0
chr19	60750628	60753409	H9_polyA+.38800	0	-	60750628	60753409	0	2	192,578	0,2203
chr19	60752808	60753577	A549_Myers.73173	0	.	60752808	60753577	0	1	769	0
chr19	60771222	60771937	B_Cells_Pritchard.2617355	0	.	60771222	60771937	0	1	715	0
chr19	60785658	60790802	A549_Myers.88315	0	-	60785658	60790802	0	3	25,574,411	0,3072,4733
chr19	60788699	60789569	B_Cells_Pritchard.2617397	0	.	60788699	60789569	0	1	870	0
chr19	60807581	60808291	REMC_MyoepithelialBreast.77185	0	.	60807581	60808291	0	1	710	0
chr19	60807791	60808449	BT474_Burge_Thompson.30234	0	.	60807791	60808449	0	1	658	0
chr19	60829993	60830747	H1_polyA+.98116	0	.	60829993	60830747	0	1	754	0
chr19	60834713	60835646	B_Cells_Pritchard.2617439	0	+	60834713	60835646	0	1	933	0
chr19	60901536	60901893	brain_AmbionMAQC.38527	0	.	60901536	60901893	0	1	357	0
chr19	60902210	60903027	B_cells_Cheung.170038	0	.	60902210	60903027	0	1	817	0
chr19	60902210	60903033	K562.38995	0	.	60902210	60903033	0	1	823	0
chr19	60904607	60908627	B_Cells_Pritchard.2617477	0	+	60904607	60908627	0	3	1159,44,1890	0,1558,2130
chr19	60905262	60906612	H1_polyA+.97888	0	.	60905262	60906612	0	1	1350	0
chr19	60905264	60905995	melanoma_Garraway_short_term_cultures.58487	0	.	60905264	60905995	0	1	731	0
chr19	60905404	60906009	CD4_Plagnol_activated.56742	0	.	60905404	60906009	0	1	605	0
chr19	60905414	60905947	BT20_Thompson.19084	0	.	60905414	60905947	0	1	533	0
chr19	60905417	60905999	prostate_carcinoma.90029	0	.	60905417	60905999	0	1	582	0
chr19	60905429	60905928	CD4_Plagnol_resting.54777	0	.	60905429	60905928	0	1	499	0
chr19	60905429	60906016	HepG2_Caltech_ENCODE.31878	0	.	60905429	60906016	0	1	587	0
chr19	60905432	60905879	H9_polyA+.38834	0	.	60905432	60905879	0	1	447	0
chr19	60906173	60906571	CD4_Plagnol_resting.54778	0	.	60906173	60906571	0	1	398	0
chr19	60906741	60907293	H1_rRNA-depleted_UCSD_REMC.73512	0	.	60906741	60907293	0	1	552	0
chr19	60906749	60908982	B_cells_Cheung.162210	0	.	60906749	60908982	0	1	2233	0
chr19	60906774	60908602	CD4_Plagnol_resting.54779	0	.	60906774	60908602	0	1	1828	0
chr19	60906778	60908201	liver_polyA+.111530	0	.	60906778	60908201	0	1	1423	0
chr19	60906779	60909567	melanoma_Garraway_short_term_cultures.58488	0	.	60906779	60909567	0	1	2788	0
chr19	60906790	60908893	K562.38993	0	.	60906790	60908893	0	1	2103	0
chr19	60906792	60907390	HeLa_polyA+_Chen.31010	0	.	60906792	60907390	0	1	598	0
chr19	60906797	60907686	MeWo_Garraway.31543	0	.	60906797	60907686	0	1	889	0
chr19	60906808	60909588	BT20_Thompson.19085	0	.	60906808	60909588	0	1	2780	0
chr19	60906818	60907289	H9_polyA+.38835	0	.	60906818	60907289	0	1	471	0
chr19	60906964	60908548	MDAMB468_Thompson.21254	0	.	60906964	60908548	0	1	1584	0
chr19	60907227	60908697	T47D_Burge_Thompson.25608	0	.	60907227	60908697	0	1	1470	0
chr19	60907239	60908592	MCF7_Burge_Thompson.27787	0	.	60907239	60908592	0	1	1353	0
chr19	60907577	60908319	H9_polyA+.38836	0	.	60907577	60908319	0	1	742	0
chr19	60907649	60908990	HeLa_polyA+_Chen.31011	0	.	60907649	60908990	0	1	1341	0
chr19	60907716	60908237	brain_AmbionMAQC.38530	0	.	60907716	60908237	0	1	521	0
chr19	61269860	61281976	Rinn_00026836	0	+	61269860	61281976	0	4	293,516,165,688	0,9877,10495,11428
chr19	61269861	61282023	HIT000096460	0	+	61269861	61282023	0	4	292,515,164,734	0,9877,10495,11428
chr19	61269861	61281976	ENST00000505773	0	+	61269861	61281976	0	4	292,515,164,687	0,9877,10495,11428
chr19	61277921	61278788	REMC_LuminalBreast.83409	0	.	61277921	61278788	0	1	867	0
chr19	61279343	61280599	REMC_MyoepithelialBreast.77200	0	.	61279343	61280599	0	1	1256	0
chr19	61279759	61280778	B_Cells_Pritchard.2618479	0	.	61279759	61280778	0	1	1019	0
chr19	61283819	61284238	REMC_MyoepithelialBreast.77202	0	.	61283819	61284238	0	1	419	0
chr19	61283824	61284827	REMC_BreastStem.42442	0	.	61283824	61284827	0	1	1003	0
chr19	61283841	61284808	B_Cells_Pritchard.2618489	0	.	61283841	61284808	0	1	967	0
chr19	61283849	61284543	H1_polyA+.97890	0	.	61283849	61284543	0	1	694	0
chr19	61283850	61284184	B_cells_Cheung.162235	0	.	61283850	61284184	0	1	334	0
chr19	61283862	61284559	prostate_carcinoma.83967	0	.	61283862	61284559	0	1	697	0
chr19	61285997	61287561	melanoma_Garraway_short_term_cultures.58495	0	.	61285997	61287561	0	1	1564	0
chr19	61286061	61287742	MCF7_Burge_Thompson.27788	0	.	61286061	61287742	0	1	1681	0
chr19	61286075	61287639	CD4_Plagnol_activated.56327	0	+	61286075	61287639	0	2	111,700	0,864
chr19	61286146	61287657	K562.38725	0	.	61286146	61287657	0	1	1511	0
chr19	61286248	61287632	BT20_Thompson.19089	0	.	61286248	61287632	0	1	1384	0
chr19	61286347	61287292	MDAMB468_Thompson.21267	0	.	61286347	61287292	0	1	945	0
chr19	61286363	61287574	MCF10A_Thompson.18574	0	.	61286363	61287574	0	1	1211	0
chr19	61286470	61287559	prostate_normal.50677	0	.	61286470	61287559	0	1	1089	0
chr19	61286570	61287705	T47D_Burge_Thompson.25609	0	.	61286570	61287705	0	1	1135	0
chr19	61286839	61287210	MB435_Burge.37675	0	.	61286839	61287210	0	1	371	0
chr19	61286931	61287375	BT474_Burge_Thompson.30253	0	.	61286931	61287375	0	1	444	0
chr19	61286932	61287573	CD4_Plagnol_resting.54784	0	.	61286932	61287573	0	1	641	0
chr19	61286937	61287237	A549_Myers.73215	0	.	61286937	61287237	0	1	300	0
chr19	61286978	61289400	MDAMB231_Thompson.19089	0	.	61286978	61289400	0	1	2422	0
chr19	61286979	61287383	brain_AmbionMAQC.38531	0	.	61286979	61287383	0	1	404	0
chr19	61287042	61287348	H9_polyA+.38837	0	.	61287042	61287348	0	1	306	0
chr19	63778450	63778766	HME_Burge.36184	0	.	63778450	63778766	0	1	316	0
chr19	63778464	63778921	CD4_Snyder.61830	0	.	63778464	63778921	0	1	457	0
chr19	63778704	63784947	pHIT000092760	0	+	63778704	63784947	0	2	63,324	0,5919
chr19	63778909	63779932	REMC_BreastStem.42721	0	.	63778909	63779932	0	1	1023	0
chr19	63784426	63784901	heart_Burge.25078	0	.	63784426	63784901	0	1	475	0
chr19	63784431	63785179	IMR90_UCSD_REMC.42506	0	-	63784431	63785179	0	1	748	0
chr19	63784437	63784900	HeLa_Bartel_miR-1_12hr.26952	0	.	63784437	63784900	0	1	463	0
chr19	63784443	63785088	HeLa_Bartel_WT_12hr.28081	0	.	63784443	63785088	0	1	645	0
chr19	63784453	63785167	skeletal_muscle_Burge.25616	0	.	63784453	63785167	0	1	714	0
chr19	63784576	63785125	HeLa_Bartel_WT_32hr.10431	0	.	63784576	63785125	0	1	549	0
chr19	63785806	63787734	T47D_Burge_Thompson.26491	0	.	63785806	63787734	0	1	1928	0
chr19	63785809	63786997	MeI_Garraway.15232	0	.	63785809	63786997	0	1	1188	0
chr19	63785809	63786997	MeI_Garraway.15231	0	-	63785809	63786997	0	2	122,830	0,358
chr19	63785824	63786570	skeletal_muscle_Burge.25617	0	.	63785824	63786570	0	1	746	0
chr19	63785900	63786549	IMR90_UCSD_REMC.42505	0	-	63785900	63786549	0	1	649	0
chr19	63785917	63787425	HeLa_polyA-_Chen.16546	0	.	63785917	63787425	0	1	1508	0
chr19	63785950	63787463	breast_Burge.36004	0	.	63785950	63787463	0	1	1513	0
chr19	63785970	63787035	MB435_Burge.38298	0	.	63785970	63787035	0	1	1065	0
chr19	63786020	63786551	HME_Burge.36009	0	.	63786020	63786551	0	1	531	0
chr19	63786100	63787377	HIT000091054	0	+	63786100	63787377	0	1	1277	0
chr19	63786101	63786716	lymph_node_Burge.44459	0	.	63786101	63786716	0	1	615	0
chr19	63786271	63787220	HeLa_Bartel_WT_12hr.28064	0	.	63786271	63787220	0	1	949	0
chr19	63786433	63787273	NEC_from_H9.65063	0	.	63786433	63787273	0	1	840	0
chr19	63788902	63789230	K562.39039	0	.	63788902	63789230	0	1	328	0
chr19	63788943	63789938	MIP101.58741	0	.	63788943	63789938	0	1	995	0
chr19	63788946	63789774	MDAMB231_Thompson.19264	0	.	63788946	63789774	0	1	828	0
chr19	63803670	63803990	K562.39044	0	.	63803670	63803990	0	1	320	0
chr2	18038	19642	REMC_MyoepithelialBreast.77625	0	.	18038	19642	0	1	1604	0
chr2	18067	20539	REMC_LuminalBreast.83842	0	.	18067	20539	0	1	2472	0
chr2	184144	190400	XR_079464	0	-	184144	190400	0	6	3282,261,319,398,52,68	0,3303,3667,4037,5029,6188
chr2	184477	188451	HIT000096073	0	-	184477	188451	0	1	3974	0
chr2	187567	192605	Rinn_00002784	0	+	187567	192605	0	2	2334,2443	0,2595
chr2	187568	192605	ENST00000437798	0	+	187568	192605	0	2	2333,2442	0,2595
chr2	187876	192657	HIT000259482	0	+	187876	192657	0	2	2025,2494	0,2287
chr2	188352	200331	Rinn_00004654	0	+	188352	200331	0	4	263,159,68,848	0,1390,1810,11131
chr2	189374	201224	Rinn_00003527	0	+	189374	201224	0	3	527,68,1741	0,788,10109
chr2	199992	204651	pHIT000099232	0	+	199992	204651	0	3	20,192,481	0,653,4178
chr2	200619	204651	pHIT000099230	0	+	200619	204651	0	2	218,481	0,3551
chr2	284377	289900	REMC_LuminalBreast.83855	0	+	284377	289900	0	2	1998,3462	0,2061
chr2	284748	286828	HepG2_Caltech_ENCODE.32138	0	.	284748	286828	0	1	2080	0
chr2	285132	287607	REMC_MyoepithelialBreast.77644	0	.	285132	287607	0	1	2475	0
chr2	288432	289610	REMC_MyoepithelialBreast.77646	0	.	288432	289610	0	1	1178	0
chr2	290026	293732	REMC_LuminalBreast.83856	0	.	290026	293732	0	1	3706	0
chr2	291246	291975	REMC_BreastStem.42728	0	.	291246	291975	0	1	729	0
chr2	291449	293052	REMC_MyoepithelialBreast.77647	0	.	291449	293052	0	1	1603	0
chr2	307975	311285	pHIT000003715	0	+	307975	311285	0	2	88,404	0,2906
chr2	308709	309745	A549_Myers.73692	0	-	308709	309745	0	2	386,495	0,541
chr2	308873	309567	BT474_Burge_Thompson.30620	0	.	308873	309567	0	1	694	0
chr2	308885	309586	MCF7_Burge_Thompson.28068	0	.	308885	309586	0	1	701	0
chr2	308903	309592	B_Cells_Pritchard.2624275	0	.	308903	309592	0	1	689	0
chr2	309059	309745	A549_Myers.73693	0	.	309059	309745	0	1	686	0
chr2	309209	309557	ZR751_Thompson.21184	0	.	309209	309557	0	1	348	0
chr2	378930	379981	REMC_LuminalBreast.83858	0	.	378930	379981	0	1	1051	0
chr2	379689	381511	HeLa_polyA+_Chen.31307	0	.	379689	381511	0	1	1822	0
chr2	380087	383083	REMC_LuminalBreast.83859	0	.	380087	383083	0	1	2996	0
chr2	380936	381296	BT474_Burge_Thompson.30621	0	.	380936	381296	0	1	360	0
chr2	382092	383041	prostate_carcinoma.84315	0	.	382092	383041	0	1	949	0
chr2	382484	383453	HeLa_polyA+_Chen.31311	0	.	382484	383453	0	1	969	0
chr2	382658	383352	BT474_Burge_Thompson.30622	0	.	382658	383352	0	1	694	0
chr2	383095	383399	prostate_carcinoma.84316	0	.	383095	383399	0	1	304	0
chr2	383513	384095	HeLa_polyA+_Chen.31312	0	.	383513	384095	0	1	582	0
chr2	383796	384254	prostate_carcinoma.84317	0	.	383796	384254	0	1	458	0
chr2	485729	486627	Rinn_00004655	0	+	485729	486627	0	2	209,516	0,382
chr2	485793	486628	Rinn_00003531	0	+	485793	486628	0	2	145,445	0,390
chr2	485798	492029	B_cells_Cheung.163126	0	+	485798	492029	0	2	2056,422	0,5809
chr2	485821	487877	B_Cells_Pritchard.2624639	0	.	485821	487877	0	1	2056	0
chr2	485822	486129	testes_Burge.46576	0	.	485822	486129	0	1	307	0
chr2	486198	486627	testes_Burge.46577	0	.	486198	486627	0	1	429	0
chr2	491185	492013	B_Cells_Pritchard.2624661	0	.	491185	492013	0	1	828	0
chr2	491598	491945	A549_Myers.73698	0	.	491598	491945	0	1	347	0
chr2	512031	512513	A549_Myers.73699	0	.	512031	512513	0	1	482	0
chr2	516698	517445	B_Cells_Pritchard.2624711	0	.	516698	517445	0	1	747	0
chr2	516774	517533	BT474_Burge_Thompson.30623	0	.	516774	517533	0	1	759	0
chr2	524354	525158	BT474_Burge_Thompson.30624	0	.	524354	525158	0	1	804	0
chr2	535803	536667	Rinn_00002791	0	+	535803	536667	0	2	233,429	0,435
chr2	535804	536667	ENST00000454477	0	+	535804	536667	0	2	232,428	0,435
chr2	535804	536697	HIT000095109	0	+	535804	536697	0	2	232,458	0,435
chr2	547823	554135	Rinn_00003532	0	+	547823	554135	0	7	454,258,109,64,61,238,295	0,909,1284,2253,4545,5246,6017
chr2	571842	572679	pHIT000003716	0	+	571842	572679	0	2	58,350	0,487
chr2	578033	578371	A549_Myers.73702	0	.	578033	578371	0	1	338	0
chr2	584761	591215	pHIT000003717	0	+	584761	591215	0	3	123,76,566	0,1556,5888
chr2	594009	617559	pHIT000003718	0	-	594009	617559	0	7	156,122,149,72,71,163,53	0,2596,16118,18028,18517,20264,23497
chr2	594313	594766	REMC_LuminalBreast.83860	0	.	594313	594766	0	1	453	0
chr2	594402	594788	A549_Myers.73703	0	.	594402	594788	0	1	386	0
chr2	610123	617559	pHIT000099234	0	-	610123	617559	0	3	153,163,53	0,4150,7383
chr2	610675	617559	pHIT000099237	0	-	610675	617559	0	3	96,163,53	0,3598,6831
chr2	626179	627136	A549_Myers.73706	0	.	626179	627136	0	1	957	0
chr2	626242	626812	pHIT000003719	0	+	626242	626812	0	1	570	0
chr2	626565	627119	HeLa_polyA-_Chen.16556	0	.	626565	627119	0	1	554	0
chr2	626583	628395	HeLa_polyA+_Chen.31318	0	.	626583	628395	0	1	1812	0
chr2	630748	631861	HeLa_polyA+_Chen.31319	0	.	630748	631861	0	1	1113	0
chr2	637674	638141	A549_Myers.73707	0	.	637674	638141	0	1	467	0
chr2	639732	640314	HeLa_polyA+_Chen.31321	0	.	639732	640314	0	1	582	0
chr2	650668	651395	B_Cells_Pritchard.2624969	0	.	650668	651395	0	1	727	0
chr2	651058	651526	B_cells_Cheung.163127	0	.	651058	651526	0	1	468	0
chr2	651225	652661	REMC_LuminalBreast.83863	0	.	651225	652661	0	1	1436	0
chr2	652150	652809	REMC_MyoepithelialBreast.77649	0	.	652150	652809	0	1	659	0
chr2	653812	656523	Rinn_00003534	0	+	653812	656523	0	2	1895,758	0,1953
chr2	653812	656523	Rinn_00003533	0	+	653812	656523	0	3	1431,178,994	0,1485,1717
chr2	653890	657014	Rinn_00004657	0	+	653890	657014	0	2	1357,1714	0,1410
chr2	656253	656932	T47D_Burge_Thompson.25921	0	.	656253	656932	0	1	679	0
chr2	656542	656945	H9_polyA+.39271	0	.	656542	656945	0	1	403	0
chr2	673493	674967	H1_polyA+.98248	0	.	673493	674967	0	1	1474	0
chr2	673629	674324	B_Cells_Pritchard.2624993	0	.	673629	674324	0	1	695	0
chr2	673767	675351	HepG2_Caltech_ENCODE.32144	0	.	673767	675351	0	1	1584	0
chr2	675574	676319	HepG2_Caltech_ENCODE.32145	0	.	675574	676319	0	1	745	0
chr2	678114	678883	H9_polyA+.39278	0	.	678114	678883	0	1	769	0
chr2	678226	678896	HepG2_Caltech_ENCODE.32146	0	.	678226	678896	0	1	670	0
chr2	678389	679432	B_Cells_Pritchard.2625011	0	.	678389	679432	0	1	1043	0
chr2	679970	680700	B_Cells_Pritchard.2625013	0	.	679970	680700	0	1	730	0
chr2	680008	680380	A549_Myers.73720	0	.	680008	680380	0	1	372	0
chr2	683209	687855	Rinn_00003537	0	+	683209	687855	0	2	436,710	0,3936
chr2	683508	687471	MB435_Burge.37860	0	+	683508	687471	0	2	137,325	0,3638
chr2	687057	687611	B_Cells_Pritchard.2625037	0	.	687057	687611	0	1	554	0
chr2	714965	721195	ENST00000433724	0	-	714965	721195	0	2	317,176	0,6054
chr2	718103	718893	A549_Myers.73724	0	-	718103	718893	0	2	441,95	0,695
chr2	729663	739423	H1_polyA+.98250	0	+	729663	739423	0	2	1467,1766	0,7994
chr2	730141	731012	K562.39077	0	+	730141	731012	0	2	162,646	0,225
chr2	730873	739421	REMC_LuminalBreast.83866	0	+	730873	739421	0	2	257,1764	0,6784
chr2	730877	739385	MCF7_Burge_Thompson.28075	0	+	730877	739385	0	2	253,1728	0,6780
chr2	736154	736936	H1_polyA+.98253	0	.	736154	736936	0	1	782	0
chr2	737420	739423	H1_polyA+.98249	0	.	737420	739423	0	1	2003	0
chr2	737430	739421	REMC_LuminalBreast.83867	0	.	737430	739421	0	1	1991	0
chr2	737582	738921	H9_polyA+.39279	0	.	737582	738921	0	1	1339	0
chr2	737624	738873	BT474_Burge_Thompson.30627	0	.	737624	738873	0	1	1249	0
chr2	738084	738854	MIP101.58768	0	.	738084	738854	0	1	770	0
chr2	738163	738881	NEC_from_H9.65100	0	.	738163	738881	0	1	718	0
chr2	738232	738872	B_Cells_Pritchard.2625211	0	.	738232	738872	0	1	640	0
chr2	738509	739375	REMC_MyoepithelialBreast.77656	0	.	738509	739375	0	1	866	0
chr2	769761	854113	HIT000097746	0	-	769761	854113	0	4	827,221,239,310	0,26275,69896,84042
chr2	769836	854112	NR_033880	0	-	769836	854112	0	4	752,221,239,309	0,26200,69821,83967
chr2	769836	854112	Rinn_00002657	0	-	769836	854112	0	4	752,222,240,310	0,26199,69820,83966
chr2	769836	854112	ENST00000414556	0	-	769836	854112	0	4	752,221,239,309	0,26200,69821,83967
chr2	784523	785232	B_Cells_Pritchard.2625363	0	.	784523	785232	0	1	709	0
chr2	795614	797941	MCF7_Burge_Thompson.28076	0	.	795614	797941	0	1	2327	0
chr2	807614	807924	A549_Myers.73731	0	.	807614	807924	0	1	310	0
chr2	810568	811283	B_Cells_Pritchard.2625429	0	.	810568	811283	0	1	715	0
chr2	834693	835408	B_Cells_Pritchard.2625525	0	.	834693	835408	0	1	715	0
chr2	838985	839523	B_cells_Cheung.163142	0	.	838985	839523	0	1	538	0
chr2	847403	847736	BT474_Burge_Thompson.30632	0	.	847403	847736	0	1	333	0
chr2	847414	849050	B_Cells_Pritchard.2625585	0	.	847414	849050	0	1	1636	0
chr2	848502	848872	prostate_carcinoma.84326	0	.	848502	848872	0	1	370	0
chr2	849903	850750	B_Cells_Pritchard.2625591	0	.	849903	850750	0	1	847	0
chr2	850643	851199	CD4_Snyder.61879	0	.	850643	851199	0	1	556	0
chr2	851935	852419	CD4_Snyder.61882	0	.	851935	852419	0	1	484	0
chr2	851995	852458	B_Cells_Pritchard.2625599	0	.	851995	852458	0	1	463	0
chr2	853890	856372	pHIT000003721	0	-	853890	856372	0	2	1181,154	0,2328
chr2	855772	877070	prostate_carcinoma.84327	0	+	855772	877070	0	2	248,8913	0,12385
chr2	856746	865202	pHIT000003722	0	-	856746	865202	0	3	317,211,603	0,455,7853
chr2	857201	865202	pHIT000074253	0	-	857201	865202	0	2	211,603	0,7398
chr2	857536	858013	A549_Myers.73733	0	.	857536	858013	0	1	477	0
chr2	863364	863879	B_cells_Cheung.163146	0	.	863364	863879	0	1	515	0
chr2	865845	866226	A549_Myers.73735	0	.	865845	866226	0	1	381	0
chr2	865863	866783	B_Cells_Pritchard.2625651	0	.	865863	866783	0	1	920	0
chr2	866965	867615	B_Cells_Pritchard.2625653	0	.	866965	867615	0	1	650	0
chr2	870143	876992	B_Cells_Pritchard.2625669	0	.	870143	876992	0	1	6849	0
chr2	870915	872843	B_cells_Cheung.163150	0	.	870915	872843	0	1	1928	0
chr2	875890	877104	B_cells_Cheung.163152	0	.	875890	877104	0	1	1214	0
chr2	876202	877072	prostate_normal.51079	0	.	876202	877072	0	1	870	0
chr2	877200	879235	B_cells_Cheung.163153	0	.	877200	879235	0	1	2035	0
chr2	878971	879337	A549_Myers.73736	0	.	878971	879337	0	1	366	0
chr2	885983	887649	Rinn_00005059	0	-	885983	887649	0	3	155,158,73	0,1263,1593
chr2	892963	894546	H1_polyA+.98255	0	.	892963	894546	0	1	1583	0
chr2	915788	916100	A549_Myers.73737	0	.	915788	916100	0	1	312	0
chr2	917352	918075	pHIT000003724	0	-	917352	918075	0	1	723	0
chr2	917437	918211	pHIT000074254	0	+	917437	918211	0	1	774	0
chr2	935319	935960	ENST00000456949	0	-	935319	935960	0	2	168,364	0,277
chr2	935326	936491	B_cells_Cheung.163154	0	-	935326	936491	0	2	161,895	0,270
chr2	935369	936471	prostate_carcinoma.84329	0	-	935369	936471	0	2	831,142	0,960
chr2	1526493	1531052	BT474_Burge_Thompson.30705	0	-	1526493	1531052	0	2	937,297	0,4262
chr2	1526607	1527169	T47D_Burge_Thompson.26001	0	.	1526607	1527169	0	1	562	0
chr2	1526684	1527151	B_Cells_Pritchard.2627631	0	.	1526684	1527151	0	1	467	0
chr2	1526703	1527775	B_cells_Cheung.163220	0	.	1526703	1527775	0	1	1072	0
chr2	1530640	1531067	B_Cells_Pritchard.2627651	0	.	1530640	1531067	0	1	427	0
chr2	1531449	1534529	prostate_carcinoma.84701	0	.	1531449	1534529	0	1	3080	0
chr2	1531926	1548217	prostate_carcinoma.84702	0	-	1531926	1548217	0	2	1523,186	0,16105
chr2	1533019	1533445	A549_Myers.73761	0	.	1533019	1533445	0	1	426	0
chr2	1534851	1538385	H1_polyA+.98323	0	.	1534851	1538385	0	1	3534	0
chr2	1539212	1539928	H1_polyA+.98324	0	.	1539212	1539928	0	1	716	0
chr2	1539524	1539937	prostate_normal.51115	0	.	1539524	1539937	0	1	413	0
chr2	1540029	1540919	H1_polyA+.98325	0	.	1540029	1540919	0	1	890	0
chr2	1541355	1542865	H1_polyA+.98326	0	.	1541355	1542865	0	1	1510	0
chr2	1541381	1542018	prostate_normal.51116	0	.	1541381	1542018	0	1	637	0
chr2	1541473	1542145	H9_polyA+.39381	0	.	1541473	1542145	0	1	672	0
chr2	1541484	1543077	prostate_carcinoma.84705	0	.	1541484	1543077	0	1	1593	0
chr2	1541703	1546396	Rinn_00004668	0	+	1541703	1546396	0	3	70,646,522	0,2336,4171
chr2	1541703	1546396	Rinn_00004669	0	+	1541703	1546396	0	3	70,662,522	0,2336,4171
chr2	1541903	1542369	A549_Myers.73764	0	.	1541903	1542369	0	1	466	0
chr2	1544047	1545021	T47D_Burge_Thompson.25949	0	.	1544047	1545021	0	1	974	0
chr2	1544077	1545379	H1_polyA+.98327	0	.	1544077	1545379	0	1	1302	0
chr2	1545133	1547662	T47D_Burge_Thompson.25950	0	.	1545133	1547662	0	1	2529	0
chr2	1545559	1547674	H1_polyA+.98328	0	.	1545559	1547674	0	1	2115	0
chr2	1545896	1546956	MCF7_Burge_Thompson.28086	0	.	1545896	1546956	0	1	1060	0
chr2	1545913	1547642	MIP101.58778	0	.	1545913	1547642	0	1	1729	0
chr2	1545926	1547086	prostate_normal.51118	0	.	1545926	1547086	0	1	1160	0
chr2	1546727	1547683	ZR751_Thompson.21210	0	.	1546727	1547683	0	1	956	0
chr2	1546858	1547300	REMC_LuminalBreast.83872	0	.	1546858	1547300	0	1	442	0
chr2	1547156	1547657	prostate_normal.51119	0	.	1547156	1547657	0	1	501	0
chr2	1547307	1547677	BT474_Burge_Thompson.30714	0	.	1547307	1547677	0	1	370	0
chr2	1547315	1547694	H9_polyA+.39383	0	.	1547315	1547694	0	1	379	0
chr2	1549841	1550749	prostate_normal.51121	0	.	1549841	1550749	0	1	908	0
chr2	1550871	1567634	pHIT000003726	0	-	1550871	1567634	0	2	1293,96	0,16667
chr2	1551981	1554567	H1_polyA+.98331	0	.	1551981	1554567	0	1	2586	0
chr2	1552561	1555974	prostate_normal.51123	0	.	1552561	1555974	0	1	3413	0
chr2	1552595	1555781	MIP101.58780	0	.	1552595	1555781	0	1	3186	0
chr2	1552609	1553710	MCF7_Burge_Thompson.28087	0	.	1552609	1553710	0	1	1101	0
chr2	1552634	1553157	H9_polyA+.39385	0	.	1552634	1553157	0	1	523	0
chr2	1552694	1554099	REMC_LuminalBreast.83874	0	.	1552694	1554099	0	1	1405	0
chr2	1552700	1555781	T47D_Burge_Thompson.25954	0	.	1552700	1555781	0	1	3081	0
chr2	1552700	1572473	T47D_Burge_Thompson.25953	0	-	1552700	1572473	0	4	2497,135,169,942	0,2946,18542,18831
chr2	1553291	1553668	BT474_Burge_Thompson.30718	0	.	1553291	1553668	0	1	377	0
chr2	1553932	1554688	BT474_Burge_Thompson.30719	0	.	1553932	1554688	0	1	756	0
chr2	1554722	1559285	H1_polyA+.98332	0	.	1554722	1559285	0	1	4563	0
chr2	1556884	1559489	REMC_LuminalBreast.83876	0	.	1556884	1559489	0	1	2605	0
chr2	1562336	1563723	H1_polyA+.98335	0	.	1562336	1563723	0	1	1387	0
chr2	1562402	1563289	MIP101.58781	0	.	1562402	1563289	0	1	887	0
chr2	1564138	1565293	REMC_BreastStem.42756	0	.	1564138	1565293	0	1	1155	0
chr2	1564714	1569588	H1_polyA+.98336	0	.	1564714	1569588	0	1	4874	0
chr2	1565716	1566228	T47D_Burge_Thompson.25956	0	.	1565716	1566228	0	1	512	0
chr2	1565724	1566186	BT474_Burge_Thompson.30721	0	.	1565724	1566186	0	1	462	0
chr2	1565931	1566604	ZR751_Thompson.21214	0	.	1565931	1566604	0	1	673	0
chr2	1566164	1569858	MIP101.58783	0	.	1566164	1569858	0	1	3694	0
chr2	1567104	1567847	T47D_Burge_Thompson.25957	0	.	1567104	1567847	0	1	743	0
chr2	1567203	1567661	BT474_Burge_Thompson.30722	0	.	1567203	1567661	0	1	458	0
chr2	1567437	1587551	prostate_normal.51124	0	-	1567437	1587551	0	3	3974,166,495	0,12047,19619
chr2	1567438	1567847	MCF7_Burge_Thompson.28089	0	.	1567438	1567847	0	1	409	0
chr2	1568350	1569369	H9_polyA+.39389	0	.	1568350	1569369	0	1	1019	0
chr2	1568584	1569635	REMC_LuminalBreast.83879	0	.	1568584	1569635	0	1	1051	0
chr2	1568785	1569478	T47D_Burge_Thompson.25958	0	.	1568785	1569478	0	1	693	0
chr2	1568810	1569344	ZR751_Thompson.21215	0	.	1568810	1569344	0	1	534	0
chr2	1568995	1569439	BT474_Burge_Thompson.30725	0	.	1568995	1569439	0	1	444	0
chr2	1569651	1570690	H1_polyA+.98338	0	.	1569651	1570690	0	1	1039	0
chr2	1569868	1570481	T47D_Burge_Thompson.25959	0	.	1569868	1570481	0	1	613	0
chr2	1570021	1570359	BT474_Burge_Thompson.30727	0	.	1570021	1570359	0	1	338	0
chr2	1570023	1571390	ZR751_Thompson.21216	0	.	1570023	1571390	0	1	1367	0
chr2	1570101	1589803	T47D_Burge_Thompson.25961	0	+	1570101	1589803	0	2	270,83	0,19619
chr2	1570614	1571145	T47D_Burge_Thompson.25962	0	.	1570614	1571145	0	1	531	0
chr2	1570614	1571173	BT474_Burge_Thompson.30729	0	.	1570614	1571173	0	1	559	0
chr2	1570627	1571071	MCF7_Burge_Thompson.28090	0	.	1570627	1571071	0	1	444	0
chr2	1570955	1571676	H9_polyA+.39390	0	.	1570955	1571676	0	1	721	0
chr2	1571236	1571714	BT474_Burge_Thompson.30730	0	.	1571236	1571714	0	1	478	0
chr2	1571242	1572473	T47D_Burge_Thompson.25955	0	.	1571242	1572473	0	1	1231	0
chr2	1571439	1591554	H1_polyA+.98337	0	.	1571439	1591554	0	1	20115	0
chr2	1571744	1572459	H9_polyA+.39391	0	.	1571744	1572459	0	1	715	0
chr2	1572053	1575622	MIP101.58785	0	.	1572053	1575622	0	1	3569	0
chr2	1572639	1574355	REMC_LuminalBreast.83880	0	.	1572639	1574355	0	1	1716	0
chr2	1572912	1588087	T47D_Burge_Thompson.25964	0	-	1572912	1588087	0	2	13,1383	0,13792
chr2	1573368	1573772	prostate_normal.51126	0	.	1573368	1573772	0	1	404	0
chr2	1573386	1573919	H9_polyA+.39392	0	.	1573386	1573919	0	1	533	0
chr2	1573829	1575017	T47D_Burge_Thompson.25965	0	.	1573829	1575017	0	1	1188	0
chr2	1573989	1575143	H9_polyA+.39393	0	.	1573989	1575143	0	1	1154	0
chr2	1574113	1574585	BT474_Burge_Thompson.30734	0	.	1574113	1574585	0	1	472	0
chr2	1574259	1575182	A549_Myers.73768	0	.	1574259	1575182	0	1	923	0
chr2	1574912	1575668	REMC_LuminalBreast.83881	0	.	1574912	1575668	0	1	756	0
chr2	1575919	1576913	T47D_Burge_Thompson.25966	0	.	1575919	1576913	0	1	994	0
chr2	1576356	1576998	REMC_LuminalBreast.83882	0	.	1576356	1576998	0	1	642	0
chr2	1576497	1577103	H9_polyA+.39394	0	.	1576497	1577103	0	1	606	0
chr2	1576603	1578251	MIP101.58786	0	.	1576603	1578251	0	1	1648	0
chr2	1577180	1577651	BT474_Burge_Thompson.30736	0	.	1577180	1577651	0	1	471	0
chr2	1577180	1578469	T47D_Burge_Thompson.25967	0	.	1577180	1578469	0	1	1289	0
chr2	1577190	1578667	H9_polyA+.39395	0	.	1577190	1578667	0	1	1477	0
chr2	1577719	1579723	ZR751_Thompson.21218	0	.	1577719	1579723	0	1	2004	0
chr2	1577811	1578540	MCF7_Burge_Thompson.28091	0	.	1577811	1578540	0	1	729	0
chr2	1577812	1578645	BT474_Burge_Thompson.30737	0	.	1577812	1578645	0	1	833	0
chr2	1577893	1583723	prostate_normal.51125	0	+	1577893	1583723	0	2	905,4594	0,1236
chr2	1577899	1578612	REMC_LuminalBreast.83883	0	.	1577899	1578612	0	1	713	0
chr2	1578168	1578666	HeLa_polyA+_Chen.31327	0	.	1578168	1578666	0	1	498	0
chr2	1578718	1581441	H9_polyA+.39396	0	.	1578718	1581441	0	1	2723	0
chr2	1578721	1579833	BT474_Burge_Thompson.30738	0	.	1578721	1579833	0	1	1112	0
chr2	1578729	1581071	A549_Myers.73769	0	+	1578729	1581071	0	2	69,267	0,2075
chr2	1578750	1579589	T47D_Burge_Thompson.25968	0	.	1578750	1579589	0	1	839	0
chr2	1578770	1579607	REMC_LuminalBreast.83884	0	.	1578770	1579607	0	1	837	0
chr2	1579731	1580142	MCF7_Burge_Thompson.28092	0	.	1579731	1580142	0	1	411	0
chr2	1579815	1580772	REMC_LuminalBreast.83885	0	.	1579815	1580772	0	1	957	0
chr2	1579838	1581030	ZR751_Thompson.21219	0	.	1579838	1581030	0	1	1192	0
chr2	1579918	1580772	BT474_Burge_Thompson.30739	0	.	1579918	1580772	0	1	854	0
chr2	1579966	1580627	T47D_Burge_Thompson.25969	0	.	1579966	1580627	0	1	661	0
chr2	1580856	1581576	T47D_Burge_Thompson.25970	0	.	1580856	1581576	0	1	720	0
chr2	1580917	1581627	MIP101.58787	0	.	1580917	1581627	0	1	710	0
chr2	1581192	1582751	REMC_LuminalBreast.83886	0	.	1581192	1582751	0	1	1559	0
chr2	1582061	1582955	H9_polyA+.39397	0	.	1582061	1582955	0	1	894	0
chr2	1582267	1583470	T47D_Burge_Thompson.25972	0	.	1582267	1583470	0	1	1203	0
chr2	1583077	1583476	H9_polyA+.39398	0	.	1583077	1583476	0	1	399	0
chr2	1583527	1584044	H9_polyA+.39399	0	.	1583527	1584044	0	1	517	0
chr2	1585258	1588334	ZR751_Thompson.21220	0	.	1585258	1588334	0	1	3076	0
chr2	1586359	1587536	BT474_Burge_Thompson.30744	0	.	1586359	1587536	0	1	1177	0
chr2	1586865	1587589	MCF7_Burge_Thompson.28093	0	.	1586865	1587589	0	1	724	0
chr2	1586941	1589464	REMC_LuminalBreast.83888	0	.	1586941	1589464	0	1	2523	0
chr2	1587176	1587896	H9_polyA+.39404	0	.	1587176	1587896	0	1	720	0
chr2	1588449	1589805	T47D_Burge_Thompson.25960	0	.	1588449	1589805	0	1	1356	0
chr2	1588500	1591287	prostate_normal.51128	0	.	1588500	1591287	0	1	2787	0
chr2	1589206	1590096	H9_polyA+.39406	0	.	1589206	1590096	0	1	890	0
chr2	1589355	1611700	MIP101.58788	0	-	1589355	1611700	0	3	389,786,9	0,13140,22336
chr2	1589951	1591688	T47D_Burge_Thompson.25974	0	.	1589951	1591688	0	1	1737	0
chr2	1590801	1592186	REMC_LuminalBreast.83889	0	.	1590801	1592186	0	1	1385	0
chr2	1592624	1592938	A549_Myers.73770	0	.	1592624	1592938	0	1	314	0
chr2	1594676	1595468	prostate_carcinoma.84709	0	.	1594676	1595468	0	1	792	0
chr2	1595205	1596429	REMC_LuminalBreast.83891	0	.	1595205	1596429	0	1	1224	0
chr2	1595574	1596263	prostate_carcinoma.84710	0	.	1595574	1596263	0	1	689	0
chr2	1596368	1597242	prostate_carcinoma.84711	0	.	1596368	1597242	0	1	874	0
chr2	1596487	1597557	REMC_LuminalBreast.83892	0	.	1596487	1597557	0	1	1070	0
chr2	1597389	1599821	prostate_carcinoma.84712	0	.	1597389	1599821	0	1	2432	0
chr2	1597390	1599830	H1_polyA+.98340	0	.	1597390	1599830	0	1	2440	0
chr2	1597611	1600477	REMC_LuminalBreast.83869	0	.	1597611	1600477	0	1	2866	0
chr2	1599926	1601820	ZR751_Thompson.21222	0	.	1599926	1601820	0	1	1894	0
chr2	1600141	1600884	MIP101.58790	0	.	1600141	1600884	0	1	743	0
chr2	1600316	1601255	T47D_Burge_Thompson.25977	0	.	1600316	1601255	0	1	939	0
chr2	1600363	1601229	MCF7_Burge_Thompson.28094	0	.	1600363	1601229	0	1	866	0
chr2	1600543	1603480	REMC_LuminalBreast.83893	0	-	1600543	1603480	0	2	1276,985	0,1952
chr2	1601130	1603495	H9_polyA+.39409	0	-	1601130	1603495	0	2	33,1000	0,1365
chr2	1602454	1603480	REMC_LuminalBreast.83894	0	.	1602454	1603480	0	1	1026	0
chr2	1603283	1608198	HIT000048852	0	-	1603283	1608198	0	2	1475,171	0,4744
chr2	1603287	1608198	Rinn_00003150	0	-	1603287	1608198	0	2	1471,172	0,4739
chr2	1603288	1608198	ENST00000366424	0	-	1603288	1608198	0	2	1470,171	0,4739
chr2	1603623	1608351	H9_polyA+.39411	0	-	1603623	1608351	0	2	1135,324	0,4404
chr2	1603623	1609536	REMC_LuminalBreast.84011	0	-	1603623	1609536	0	2	1135,1509	0,4404
chr2	1603663	1608196	ZR751_Thompson.21225	0	-	1603663	1608196	0	2	1095,169	0,4364
chr2	1603679	1607178	T47D_Burge_Thompson.26004	0	-	1603679	1607178	0	2	1079,227	0,3272
chr2	1603689	1609495	BT474_Burge_Thompson.30658	0	-	1603689	1609495	0	2	1069,1468	0,4338
chr2	1603870	1604722	MCF7_Burge_Thompson.28097	0	.	1603870	1604722	0	1	852	0
chr2	1603877	1604785	MIP101.58793	0	.	1603877	1604785	0	1	908	0
chr2	1603885	1604734	prostate_normal.51130	0	.	1603885	1604734	0	1	849	0
chr2	1609712	1611144	MIP101.58795	0	.	1609712	1611144	0	1	1432	0
chr2	1609990	1611118	H1_polyA+.98636	0	.	1609990	1611118	0	1	1128	0
chr2	1728594	1732313	H1_polyA+.98472	0	.	1728594	1732313	0	1	3719	0
chr2	1728718	1729834	BT20_Thompson.19365	0	.	1728718	1729834	0	1	1116	0
chr2	1729119	1730083	REMC_BreastStem.42761	0	.	1729119	1730083	0	1	964	0
chr2	1732587	1733597	H1_polyA+.98473	0	.	1732587	1733597	0	1	1010	0
chr2	1732651	1736708	Rinn_00003544	0	+	1732651	1736708	0	3	318,246,1159	0,1356,2898
chr2	1733552	1736680	REMC_LuminalBreast.83902	0	+	1733552	1736680	0	2	701,1130	0,1998
chr2	1734558	1736680	REMC_LuminalBreast.83903	0	.	1734558	1736680	0	1	2122	0
chr2	1736416	1737016	prostate_carcinoma.84370	0	.	1736416	1737016	0	1	600	0
chr2	2555173	2555523	A549_Myers.73822	0	.	2555173	2555523	0	1	350	0
chr2	2556033	2556439	A549_Myers.73823	0	.	2556033	2556439	0	1	406	0
chr2	2608454	2610617	prostate_carcinoma.84376	0	.	2608454	2610617	0	1	2163	0
chr2	2617294	2619100	prostate_carcinoma.84382	0	.	2617294	2619100	0	1	1806	0
chr2	2619361	2622875	prostate_carcinoma.84383	0	.	2619361	2622875	0	1	3514	0
chr2	2620801	2622872	prostate_normal.51147	0	.	2620801	2622872	0	1	2071	0
chr2	2621958	2622554	BT474_Burge_Thompson.30661	0	.	2621958	2622554	0	1	596	0
chr2	2623038	2625184	prostate_carcinoma.84384	0	.	2623038	2625184	0	1	2146	0
chr2	2623045	2624432	prostate_normal.51148	0	.	2623045	2624432	0	1	1387	0
chr2	2623685	2624252	brain_AmbionMAQC.39118	0	.	2623685	2624252	0	1	567	0
chr2	2623861	2625031	BT474_Burge_Thompson.30662	0	.	2623861	2625031	0	1	1170	0
chr2	2625689	2626431	A549_Myers.73827	0	.	2625689	2626431	0	1	742	0
chr2	2626658	2627740	B_Cells_Pritchard.2629879	0	.	2626658	2627740	0	1	1082	0
chr2	2626752	2627178	prostate_carcinoma.84385	0	.	2626752	2627178	0	1	426	0
chr2	2627918	2628300	A549_Myers.73828	0	.	2627918	2628300	0	1	382	0
chr2	2631551	2632594	prostate_carcinoma.84387	0	.	2631551	2632594	0	1	1043	0
chr2	2633769	2634080	A549_Myers.73830	0	.	2633769	2634080	0	1	311	0
chr2	2634333	2635669	prostate_carcinoma.84388	0	.	2634333	2635669	0	1	1336	0
chr2	2637524	2639717	prostate_carcinoma.84389	0	.	2637524	2639717	0	1	2193	0
chr2	2643360	2644438	prostate_carcinoma.84390	0	.	2643360	2644438	0	1	1078	0
chr2	2643568	2643913	A549_Myers.73831	0	.	2643568	2643913	0	1	345	0
chr2	2646180	2647920	A549_Myers.73832	0	.	2646180	2647920	0	1	1740	0
chr2	2648121	2648529	A549_Myers.73833	0	.	2648121	2648529	0	1	408	0
chr2	2681493	2682104	A549_Myers.73835	0	.	2681493	2682104	0	1	611	0
chr2	2685160	2685925	brain_AmbionMAQC.39123	0	.	2685160	2685925	0	1	765	0
chr2	2691124	2691944	brain_AmbionMAQC.39124	0	.	2691124	2691944	0	1	820	0
chr2	2691278	2691611	A549_Myers.73836	0	.	2691278	2691611	0	1	333	0
chr2	2692619	2693175	A549_Myers.73837	0	.	2692619	2693175	0	1	556	0
chr2	2703283	2703923	brain_AmbionMAQC.39127	0	.	2703283	2703923	0	1	640	0
chr2	2703999	2704434	brain_AmbionMAQC.39126	0	.	2703999	2704434	0	1	435	0
chr2	2704715	2705430	brain_AmbionMAQC.39128	0	.	2704715	2705430	0	1	715	0
chr2	2713978	2714357	A549_Myers.73841	0	.	2713978	2714357	0	1	379	0
chr2	2732796	2733212	A549_Myers.73843	0	.	2732796	2733212	0	1	416	0
chr2	2750218	2750831	brain_AmbionMAQC.39130	0	.	2750218	2750831	0	1	613	0
chr2	2762718	2763409	brain_AmbionMAQC.39133	0	.	2762718	2763409	0	1	691	0
chr2	2763696	2764077	brain_AmbionMAQC.39132	0	.	2763696	2764077	0	1	381	0
chr2	2767948	2769068	B_Cells_Pritchard.2630257	0	.	2767948	2769068	0	1	1120	0
chr2	2768018	2769010	B_cells_Cheung.163229	0	.	2768018	2769010	0	1	992	0
chr2	2807933	2808653	brain_AmbionMAQC.39135	0	.	2807933	2808653	0	1	720	0
chr2	2817562	2818357	brain_AmbionMAQC.39136	0	.	2817562	2818357	0	1	795	0
chr2	2822295	2822599	A549_Myers.73848	0	.	2822295	2822599	0	1	304	0
chr2	2830790	2831105	brain_AmbionMAQC.39141	0	.	2830790	2831105	0	1	315	0
chr2	2835126	2835771	H1_polyA+.98476	0	.	2835126	2835771	0	1	645	0
chr2	2842756	2843062	A549_Myers.73850	0	.	2842756	2843062	0	1	306	0
chr2	2849194	2855477	B_cells_Cheung.163232	0	-	2849194	2855477	0	2	212,747	0,5536
chr2	2849979	2851100	B_cells_Cheung.163235	0	.	2849979	2851100	0	1	1121	0
chr2	2850156	2851152	B_Cells_Pritchard.2630545	0	.	2850156	2851152	0	1	996	0
chr2	2851315	2852331	B_Cells_Pritchard.2630547	0	.	2851315	2852331	0	1	1016	0
chr2	2852040	2852519	B_cells_Cheung.163237	0	.	2852040	2852519	0	1	479	0
chr2	2853335	2854010	Rinn_00003154	0	-	2853335	2854010	0	2	443,137	0,538
chr2	2853394	2853729	B_Cells_Pritchard.2630553	0	.	2853394	2853729	0	1	335	0
chr2	2853395	2854091	B_cells_Cheung.163240	0	.	2853395	2854091	0	1	696	0
chr2	2854669	2855477	B_cells_Cheung.163234	0	.	2854669	2855477	0	1	808	0
chr2	2854868	2855536	Rinn_00002797	0	+	2854868	2855536	0	2	74,400	0,268
chr2	2854915	2855536	Rinn_00002798	0	+	2854915	2855536	0	2	46,400	0,221
chr2	2854916	2855536	ENST00000412813	0	+	2854916	2855536	0	2	45,399	0,221
chr2	2858025	2858391	A549_Myers.73853	0	.	2858025	2858391	0	1	366	0
chr2	2915423	2915784	B_Cells_Pritchard.2630741	0	.	2915423	2915784	0	1	361	0
chr2	2915461	2915957	B_cells_Cheung.163241	0	.	2915461	2915957	0	1	496	0
chr2	2915543	2915957	A549_Myers.73855	0	.	2915543	2915957	0	1	414	0
chr2	3028229	3028597	A549_Myers.73859	0	.	3028229	3028597	0	1	368	0
chr2	3028345	3029409	prostate_carcinoma.84391	0	+	3028345	3029409	0	2	448,222	0,842
chr2	3028543	3045564	HepG2_Caltech_ENCODE.32149	0	+	3028543	3045564	0	2	40,315	0,16706
chr2	3028566	3029159	B_Cells_Pritchard.2631133	0	.	3028566	3029159	0	1	593	0
chr2	3031293	3031691	A549_Myers.73860	0	.	3031293	3031691	0	1	398	0
chr2	3044683	3046026	B_Cells_Pritchard.2631203	0	.	3044683	3046026	0	1	1343	0
chr2	3080535	3080854	A549_Myers.73863	0	.	3080535	3080854	0	1	319	0
chr2	3088387	3088867	B_Cells_Pritchard.2631319	0	.	3088387	3088867	0	1	480	0
chr2	3089648	3091250	B_Cells_Pritchard.2631325	0	.	3089648	3091250	0	1	1602	0
chr2	3091398	3092310	B_Cells_Pritchard.2631327	0	.	3091398	3092310	0	1	912	0
chr2	3091583	3091926	A549_Myers.73864	0	.	3091583	3091926	0	1	343	0
chr2	3091840	3092327	HepG2_Caltech_ENCODE.32151	0	.	3091840	3092327	0	1	487	0
chr2	3092706	3093928	B_Cells_Pritchard.2631331	0	.	3092706	3093928	0	1	1222	0
chr2	3092757	3093643	prostate_normal.51150	0	.	3092757	3093643	0	1	886	0
chr2	3093153	3093777	A549_Myers.73865	0	+	3093153	3093777	0	2	507,62	0,562
chr2	3093196	3093730	prostate_carcinoma.84392	0	.	3093196	3093730	0	1	534	0
chr2	3097305	3097893	B_Cells_Pritchard.2631351	0	.	3097305	3097893	0	1	588	0
chr2	3108351	3111127	B_Cells_Pritchard.2631393	0	.	3108351	3111127	0	1	2776	0
chr2	3113295	3115050	HepG2_Caltech_ENCODE.32158	0	.	3113295	3115050	0	1	1755	0
chr2	3113731	3114949	MIP101.58802	0	.	3113731	3114949	0	1	1218	0
chr2	3113760	3114952	B_Cells_Pritchard.2631403	0	.	3113760	3114952	0	1	1192	0
chr2	3117244	3117706	B_cells_Cheung.163247	0	.	3117244	3117706	0	1	462	0
chr2	3119671	3122507	HepG2_Caltech_ENCODE.32156	0	.	3119671	3122507	0	1	2836	0
chr2	3120081	3121866	prostate_carcinoma.84394	0	.	3120081	3121866	0	1	1785	0
chr2	3120113	3121798	brain_AmbionMAQC.39145	0	.	3120113	3121798	0	1	1685	0
chr2	3120193	3121689	H1_polyA+.98477	0	.	3120193	3121689	0	1	1496	0
chr2	3120322	3121356	prostate_normal.51152	0	.	3120322	3121356	0	1	1034	0
chr2	3120322	3126616	prostate_normal.51151	0	+	3120322	3126616	0	2	843,79	0,6215
chr2	3120404	3120798	A549_Myers.73866	0	.	3120404	3120798	0	1	394	0
chr2	3120420	3121874	B_cells_Cheung.163252	0	.	3120420	3121874	0	1	1454	0
chr2	3120919	3121633	HeLa_polyA+_Chen.31336	0	.	3120919	3121633	0	1	714	0
chr2	3120957	3121608	A549_Myers.73867	0	.	3120957	3121608	0	1	651	0
chr2	3124104	3125133	HepG2_Caltech_ENCODE.32161	0	.	3124104	3125133	0	1	1029	0
chr2	3125137	3125968	brain_AmbionMAQC.39147	0	.	3125137	3125968	0	1	831	0
chr2	3125186	3125918	HepG2_Caltech_ENCODE.32162	0	.	3125186	3125918	0	1	732	0
chr2	3125290	3125883	B_Cells_Pritchard.2631441	0	.	3125290	3125883	0	1	593	0
chr2	3126266	3126783	brain_AmbionMAQC.39146	0	.	3126266	3126783	0	1	517	0
chr2	3128349	3164052	pHIT000099257	0	+	3128349	3164052	0	2	123,861	0,34842
chr2	3129844	3131072	brain_AmbionMAQC.39148	0	.	3129844	3131072	0	1	1228	0
chr2	3130192	3133489	HepG2_Caltech_ENCODE.32163	0	.	3130192	3133489	0	1	3297	0
chr2	3130923	3131455	B_Cells_Pritchard.2631459	0	.	3130923	3131455	0	1	532	0
chr2	3131385	3132927	MIP101.58807	0	.	3131385	3132927	0	1	1542	0
chr2	3132035	3133188	B_cells_Cheung.163258	0	.	3132035	3133188	0	1	1153	0
chr2	3132123	3133100	prostate_carcinoma.84396	0	.	3132123	3133100	0	1	977	0
chr2	3132398	3164052	pHIT000099255	0	+	3132398	3164052	0	2	131,832	0,30822
chr2	3133804	3134179	B_Cells_Pritchard.2631467	0	.	3133804	3134179	0	1	375	0
chr2	3137006	3137895	B_cells_Cheung.163260	0	.	3137006	3137895	0	1	889	0
chr2	3137029	3137927	B_Cells_Pritchard.2631481	0	.	3137029	3137927	0	1	898	0
chr2	3137442	3138980	HepG2_Caltech_ENCODE.32165	0	.	3137442	3138980	0	1	1538	0
chr2	3139461	3140779	H1_polyA+.98478	0	.	3139461	3140779	0	1	1318	0
chr2	3139461	3140250	B_Cells_Pritchard.2631489	0	.	3139461	3140250	0	1	789	0
chr2	3143538	3144045	B_Cells_Pritchard.2631501	0	.	3143538	3144045	0	1	507	0
chr2	3143598	3144311	H1_polyA+.98480	0	.	3143598	3144311	0	1	713	0
chr2	3149768	3150495	B_cells_Cheung.163271	0	.	3149768	3150495	0	1	727	0
chr2	3149772	3150566	HepG2_Caltech_ENCODE.32166	0	.	3149772	3150566	0	1	794	0
chr2	3149782	3150468	B_Cells_Pritchard.2631529	0	.	3149782	3150468	0	1	686	0
chr2	3151259	3152040	B_Cells_Pritchard.2631535	0	.	3151259	3152040	0	1	781	0
chr2	3153422	3154270	B_cells_Cheung.163273	0	.	3153422	3154270	0	1	848	0
chr2	3153606	3154098	A549_Myers.73870	0	.	3153606	3154098	0	1	492	0
chr2	3153609	3154352	B_Cells_Pritchard.2631545	0	.	3153609	3154352	0	1	743	0
chr2	3155794	3156202	B_cells_Cheung.163275	0	.	3155794	3156202	0	1	408	0
chr2	3157091	3157702	B_cells_Cheung.163276	0	.	3157091	3157702	0	1	611	0
chr2	3157249	3157916	B_Cells_Pritchard.2631563	0	.	3157249	3157916	0	1	667	0
chr2	3157526	3158169	A549_Myers.73872	0	.	3157526	3158169	0	1	643	0
chr2	3157780	3158576	B_cells_Cheung.163277	0	.	3157780	3158576	0	1	796	0
chr2	3159568	3160367	H1_polyA+.98483	0	.	3159568	3160367	0	1	799	0
chr2	3161652	3162165	B_cells_Cheung.163281	0	.	3161652	3162165	0	1	513	0
chr2	3162680	3163720	B_Cells_Pritchard.2631583	0	.	3162680	3163720	0	1	1040	0
chr2	3163059	3163463	brain_AmbionMAQC.39150	0	.	3163059	3163463	0	1	404	0
chr2	3163080	3163463	A549_Myers.73874	0	.	3163080	3163463	0	1	383	0
chr2	3163193	3163496	B_cells_Cheung.163282	0	.	3163193	3163496	0	1	303	0
chr2	3163542	3164062	HeLa_polyA+_Chen.31339	0	.	3163542	3164062	0	1	520	0
chr2	3163567	3164091	H1_polyA+.98485	0	.	3163567	3164091	0	1	524	0
chr2	3163570	3164052	B_cells_Cheung.163283	0	.	3163570	3164052	0	1	482	0
chr2	3163572	3164027	CD4_Plagnol_activated.56813	0	.	3163572	3164027	0	1	455	0
chr2	3163574	3164216	H9_polyA+.39413	0	.	3163574	3164216	0	1	642	0
chr2	3163584	3164086	HepG2_Caltech_ENCODE.32167	0	.	3163584	3164086	0	1	502	0
chr2	3163589	3163943	brain_AmbionMAQC.39151	0	.	3163589	3163943	0	1	354	0
chr2	3163618	3165590	prostate_carcinoma.84399	0	.	3163618	3165590	0	1	1972	0
chr2	3165829	3167388	prostate_carcinoma.84400	0	.	3165829	3167388	0	1	1559	0
chr2	3165837	3166938	brain_AmbionMAQC.39152	0	.	3165837	3166938	0	1	1101	0
chr2	3166092	3167399	B_cells_Cheung.163287	0	.	3166092	3167399	0	1	1307	0
chr2	3166207	3167397	B_Cells_Pritchard.2631595	0	.	3166207	3167397	0	1	1190	0
chr2	3166650	3167425	H1_polyA+.98487	0	.	3166650	3167425	0	1	775	0
chr2	3167662	3168418	H1_polyA+.98488	0	.	3167662	3168418	0	1	756	0
chr2	3167688	3168452	B_cells_Cheung.163288	0	.	3167688	3168452	0	1	764	0
chr2	3167742	3168438	prostate_carcinoma.84401	0	.	3167742	3168438	0	1	696	0
chr2	3167758	3168418	brain_AmbionMAQC.39153	0	.	3167758	3168418	0	1	660	0
chr2	3168703	3170190	H1_polyA+.98489	0	.	3168703	3170190	0	1	1487	0
chr2	3168703	3170190	H1_polyA+.98490	0	-	3168703	3170190	0	2	253,1009	0,478
chr2	3168724	3169083	B_cells_Cheung.163289	0	.	3168724	3169083	0	1	359	0
chr2	3168726	3169042	prostate_carcinoma.84402	0	.	3168726	3169042	0	1	316	0
chr2	3169574	3169951	A549_Myers.73876	0	.	3169574	3169951	0	1	377	0
chr2	3468157	3471400	REMC_LuminalBreast.83923	0	.	3468157	3471400	0	1	3243	0
chr2	3468736	3469228	B_Cells_Pritchard.2632027	0	.	3468736	3469228	0	1	492	0
chr2	3469583	3477432	B_Cells_Pritchard.2632031	0	+	3469583	3477432	0	2	516,89	0,7760
chr2	3470242	3471387	H1_polyA+.98580	0	.	3470242	3471387	0	1	1145	0
chr2	3471458	3473363	REMC_MyoepithelialBreast.77702	0	.	3471458	3473363	0	1	1905	0
chr2	3473244	3477432	H1_polyA+.98581	0	.	3473244	3477432	0	1	4188	0
chr2	3473308	3474685	REMC_LuminalBreast.83925	0	.	3473308	3474685	0	1	1377	0
chr2	3474584	3475374	B_cells_Cheung.163379	0	.	3474584	3475374	0	1	790	0
chr2	3474832	3475959	REMC_LuminalBreast.83926	0	.	3474832	3475959	0	1	1127	0
chr2	3866958	3870080	prostate_carcinoma.84485	0	.	3866958	3870080	0	1	3122	0
chr2	3869544	3870134	B_cells_Cheung.163426	0	.	3869544	3870134	0	1	590	0
chr2	3869575	3870192	B_Cells_Pritchard.2632883	0	.	3869575	3870192	0	1	617	0
chr2	3872167	3873152	prostate_carcinoma.84486	0	.	3872167	3873152	0	1	985	0
chr2	3945648	3952001	A549_Myers.74028	0	-	3945648	3952001	0	2	579,61	0,6292
chr2	3977009	3977331	A549_Myers.74030	0	.	3977009	3977331	0	1	322	0
chr2	3998308	3999160	Rinn_00003164	0	-	3998308	3999160	0	2	231,152	0,700
chr2	3998309	3999143	Rinn_00003165	0	-	3998309	3999143	0	2	258,135	0,699
chr2	3998310	3999143	ENST00000457371	0	-	3998310	3999143	0	2	257,134	0,699
chr2	4160979	4162472	prostate_normal.51212	0	.	4160979	4162472	0	1	1493	0
chr2	4161118	4162903	prostate_carcinoma.84489	0	.	4161118	4162903	0	1	1785	0
chr2	4162612	4206253	pHIT000003752	0	-	4162612	4206253	0	3	230,194,116	0,3480,43525
chr2	4653630	4681687	Rinn_00005063	0	-	4653630	4681687	0	5	2225,167,218,58,58	0,6727,23146,24346,27999
chr2	4653681	4681687	Rinn_00002658	0	-	4653681	4681687	0	5	2174,167,218,62,58	0,6676,23095,24295,27948
chr2	4655663	4681668	Rinn_00003168	0	-	4655663	4681668	0	4	192,218,62,39	0,21113,22313,25966
chr2	5733873	5737608	H1_polyA+.98616	0	.	5733873	5737608	0	1	3735	0
chr2	5762463	5763101	B_Cells_Pritchard.2636219	0	.	5762463	5763101	0	1	638	0
chr2	5784031	5787925	HIT000278037	0	-	5784031	5787925	0	2	131,1615	0,2279
chr2	5786295	5787301	H9_polyA+.39461	0	.	5786295	5787301	0	1	1006	0
chr2	5899551	5900130	B_Cells_Pritchard.2636513	0	.	5899551	5900130	0	1	579	0
chr2	5924641	5925058	A549_Myers.74043	0	.	5924641	5925058	0	1	417	0
chr2	5992138	5992647	BT474_Burge_Thompson.30814	0	.	5992138	5992647	0	1	509	0
chr2	6030652	6037333	HIT000057579	0	+	6030652	6037333	0	1	6681	0
chr2	6031166	6032786	brain_AmbionMAQC.39217	0	.	6031166	6032786	0	1	1620	0
chr2	6034332	6037645	BT474_Burge_Thompson.30820	0	.	6034332	6037645	0	1	3313	0
chr2	6035720	6037537	brain_AmbionMAQC.39221	0	.	6035720	6037537	0	1	1817	0
chr2	6038862	6039434	BT474_Burge_Thompson.30821	0	.	6038862	6039434	0	1	572	0
chr2	6039559	6042480	Rinn_00002685	0	+	6039559	6042480	0	2	96,2601	0,320
chr2	6039559	6045815	Rinn_00002638	0	+	6039559	6045815	0	3	96,561,2809	0,320,3447
chr2	6039560	6045815	NR_026833	0	+	6039560	6045815	0	3	95,560,2808	0,320,3447
chr2	6039560	6042480	HIT000042914	0	+	6039560	6042480	0	2	95,2600	0,320
chr2	6039560	6042480	ENST00000444416	0	+	6039560	6042480	0	2	95,2600	0,320
chr2	6039578	6041830	HIT000502866	0	+	6039578	6041830	0	1	2252	0
chr2	6039945	6041824	BT474_Burge_Thompson.30822	0	.	6039945	6041824	0	1	1879	0
chr2	6042849	6045483	BT474_Burge_Thompson.30823	0	.	6042849	6045483	0	1	2634	0
chr2	6042934	6084149	pHIT000003754	0	-	6042934	6084149	0	3	225,149,13	0,639,41202
chr2	6042993	6056272	HIT000020569	0	+	6042993	6056272	0	3	2824,89,178	0,10549,13101
chr2	6043004	6045098	HIT000286877	0	-	6043004	6045098	0	1	2094	0
chr2	6045267	6046078	H1_polyA+.98629	0	.	6045267	6046078	0	1	811	0
chr2	6046153	6048437	H1_polyA+.98630	0	.	6046153	6048437	0	1	2284	0
chr2	6047200	6047723	brain_AmbionMAQC.39222	0	.	6047200	6047723	0	1	523	0
chr2	6320242	6320563	B_Cells_Pritchard.2637359	0	.	6320242	6320563	0	1	321	0
chr2	6475441	6475896	B_cells_Cheung.163436	0	.	6475441	6475896	0	1	455	0
chr2	6704787	6706683	HIT000022295	0	+	6704787	6706683	0	1	1896	0
chr2	7825343	7825772	B_Cells_Pritchard.2641145	0	.	7825343	7825772	0	1	429	0
chr2	7883531	7888775	REMC_LuminalBreast.83970	0	+	7883531	7888775	0	3	322,139,2672	0,755,2572
chr2	7883793	7886455	B_cells_Cheung.163551	0	+	7883793	7886455	0	2	60,352	0,2310
chr2	7886112	7886453	B_Cells_Pritchard.2641283	0	.	7886112	7886453	0	1	341	0
chr2	7886525	7887799	REMC_MyoepithelialBreast.77741	0	.	7886525	7887799	0	1	1274	0
chr2	7903923	7907152	H1_polyA+.98680	0	.	7903923	7907152	0	1	3229	0
chr2	7904934	7908842	HIT000045778	0	-	7904934	7908842	0	1	3908	0
chr2	7926524	7957234	pHIT000099289	0	+	7926524	7957234	0	4	81,250,122,270	0,12865,26784,30440
chr2	7934138	7935075	H1_rRNA-depleted_UCSD_REMC.74424	0	.	7934138	7935075	0	1	937	0
chr2	7935772	7936107	H1_rRNA-depleted_UCSD_REMC.74422	0	.	7935772	7936107	0	1	335	0
chr2	7936498	7937218	H9_polyA+.39474	0	.	7936498	7937218	0	1	720	0
chr2	7938486	7942135	H9_polyA+.39476	0	.	7938486	7942135	0	1	3649	0
chr2	7939563	7939928	H1_rRNA-depleted_UCSD_REMC.74431	0	.	7939563	7939928	0	1	365	0
chr2	7942271	7950293	H1_polyA+.98685	0	.	7942271	7950293	0	1	8022	0
chr2	7942321	7946831	H9_polyA+.39477	0	.	7942321	7946831	0	1	4510	0
chr2	7946299	7946640	H1_rRNA-depleted_UCSD_REMC.74436	0	.	7946299	7946640	0	1	341	0
chr2	7946959	7947961	H9_polyA+.39478	0	.	7946959	7947961	0	1	1002	0
chr2	7950354	7953302	H1_polyA+.98696	0	.	7950354	7953302	0	1	2948	0
chr2	7955211	7955662	H1_rRNA-depleted_UCSD_REMC.74440	0	.	7955211	7955662	0	1	451	0
chr2	7979986	8036892	HIT000097623	0	-	7979986	8036892	0	4	1944,135,138,39	0,45740,54304,56867
chr2	7980006	8034396	NR_015405	0	-	7980006	8034396	0	3	1924,135,106	0,45720,54284
chr2	7980006	8036892	ENST00000426969	0	-	7980006	8036892	0	4	1924,135,138,39	0,45720,54284,56847
chr2	7981205	8034396	HIT000386435	0	-	7981205	8034396	0	3	725,135,106	0,44521,53085
chr2	8016940	8017911	MIP101.58887	0	.	8016940	8017911	0	1	971	0
chr2	8032452	8032829	B_Cells_Pritchard.2641531	0	.	8032452	8032829	0	1	377	0
chr2	8085609	8100683	pHIT000099290	0	-	8085609	8100683	0	2	171,141	0,14933
chr2	8125127	8125563	B_Cells_Pritchard.2641789	0	.	8125127	8125563	0	1	436	0
chr2	8131498	8131918	liver_polyA+.112332	0	.	8131498	8131918	0	1	420	0
chr2	8174275	8174782	liver_polyA+.112346	0	.	8174275	8174782	0	1	507	0
chr2	8176594	8177176	liver_polyA+.112347	0	.	8176594	8177176	0	1	582	0
chr2	8196884	8219177	HepG2_Caltech_ENCODE.32214	0	+	8196884	8219177	0	3	181,2000,836	0,3585,21457
chr2	8202560	8204670	HepG2_Caltech_ENCODE.32216	0	.	8202560	8204670	0	1	2110	0
chr2	8207689	8208072	A549_Myers.74087	0	.	8207689	8208072	0	1	383	0
chr2	8209300	8211753	HepG2_Caltech_ENCODE.32215	0	.	8209300	8211753	0	1	2453	0
chr2	8218682	8219020	A549_Myers.74089	0	.	8218682	8219020	0	1	338	0
chr2	8219447	8220412	HepG2_Caltech_ENCODE.32222	0	.	8219447	8220412	0	1	965	0
chr2	8220680	8222360	HepG2_Caltech_ENCODE.32223	0	.	8220680	8222360	0	1	1680	0
chr2	8264723	8386000	ENST00000442956	0	-	8264723	8386000	0	10	898,77,221,75,106,394,118,124,143,186	0,36422,80195,87469,87631,89697,92533,105583,117399,121091
chr2	8264723	8386000	HIT000047451	0	-	8264723	8386000	0	10	898,77,221,75,106,394,118,124,143,186	0,36422,80195,87469,87631,89697,92533,105583,117399,121091
chr2	8344673	8345278	MIP101.58890	0	.	8344673	8345278	0	1	605	0
chr2	8344703	8345338	prostate_carcinoma.84569	0	.	8344703	8345338	0	1	635	0
chr2	8350830	8352464	MIP101.58891	0	.	8350830	8352464	0	1	1634	0
chr2	8371656	8372494	MIP101.58894	0	.	8371656	8372494	0	1	838	0
chr2	8374616	8375781	MIP101.58895	0	.	8374616	8375781	0	1	1165	0
chr2	8378942	8384697	MIP101.58897	0	.	8378942	8384697	0	1	5755	0
chr2	8383471	8384006	B_Cells_Pritchard.2642587	0	.	8383471	8384006	0	1	535	0
chr2	8384837	8386390	MIP101.58898	0	.	8384837	8386390	0	1	1553	0
chr2	8390541	8391537	MIP101.58901	0	.	8390541	8391537	0	1	996	0
chr2	8392259	8393230	MIP101.58902	0	.	8392259	8393230	0	1	971	0
chr2	8401794	8406492	MIP101.58906	0	.	8401794	8406492	0	1	4698	0
chr2	8406802	8407846	MIP101.58909	0	.	8406802	8407846	0	1	1044	0
chr2	8409601	8410564	MIP101.58911	0	.	8409601	8410564	0	1	963	0
chr2	8414963	8416300	MIP101.58913	0	.	8414963	8416300	0	1	1337	0
chr2	8417338	8417714	B_Cells_Pritchard.2642727	0	.	8417338	8417714	0	1	376	0
chr2	8418399	8418821	B_cells_Cheung.163602	0	.	8418399	8418821	0	1	422	0
chr2	8419880	8420463	MIP101.58915	0	.	8419880	8420463	0	1	583	0
chr2	8420570	8426793	MIP101.58907	0	.	8420570	8426793	0	1	6223	0
chr2	8425515	8426458	B_cells_Cheung.163606	0	.	8425515	8426458	0	1	943	0
chr2	8425769	8426251	B_Cells_Pritchard.2642759	0	.	8425769	8426251	0	1	482	0
chr2	8425885	8426218	A549_Myers.74100	0	.	8425885	8426218	0	1	333	0
chr2	8433845	8440212	MIP101.58918	0	.	8433845	8440212	0	1	6367	0
chr2	8438247	8439959	B_cells_Cheung.163617	0	.	8438247	8439959	0	1	1712	0
chr2	8444400	8449881	B_cells_Cheung.163623	0	-	8444400	8449881	0	2	4992,348	0,5133
chr2	8446074	8449655	B_Cells_Pritchard.2642819	0	-	8446074	8449655	0	2	3318,122	0,3459
chr2	8448418	8449365	prostate_carcinoma.84577	0	.	8448418	8449365	0	1	947	0
chr2	8449958	8450534	B_cells_Cheung.163624	0	.	8449958	8450534	0	1	576	0
chr2	8450226	8450878	B_Cells_Pritchard.2642823	0	.	8450226	8450878	0	1	652	0
chr2	8452631	8453094	B_cells_Cheung.163625	0	.	8452631	8453094	0	1	463	0
chr2	8455736	8456523	A549_Myers.74101	0	.	8455736	8456523	0	1	787	0
chr2	8461505	8461874	A549_Myers.74102	0	.	8461505	8461874	0	1	369	0
chr2	8479014	8479409	B_cells_Cheung.163631	0	.	8479014	8479409	0	1	395	0
chr2	8479754	8480090	A549_Myers.74105	0	.	8479754	8480090	0	1	336	0
chr2	8480746	8498114	prostate_carcinoma.84578	0	+	8480746	8498114	0	2	10,2165	0,15203
chr2	8483431	8484127	B_cells_Cheung.163635	0	.	8483431	8484127	0	1	696	0
chr2	8483734	8485367	MIP101.58928	0	.	8483734	8485367	0	1	1633	0
chr2	8486237	8488602	MIP101.58929	0	.	8486237	8488602	0	1	2365	0
chr2	8490259	8491994	B_cells_Cheung.163641	0	.	8490259	8491994	0	1	1735	0
chr2	8491003	8491911	B_Cells_Pritchard.2642987	0	.	8491003	8491911	0	1	908	0
chr2	8496034	8498509	MIP101.58933	0	.	8496034	8498509	0	1	2475	0
chr2	8496068	8496991	CD4_Plagnol_activated.56935	0	.	8496068	8496991	0	1	923	0
chr2	8498683	8500324	MIP101.58934	0	.	8498683	8500324	0	1	1641	0
chr2	8501532	8502151	MIP101.58936	0	.	8501532	8502151	0	1	619	0
chr2	8508735	8510406	MIP101.58941	0	.	8508735	8510406	0	1	1671	0
chr2	8509326	8509797	B_cells_Cheung.163654	0	.	8509326	8509797	0	1	471	0
chr2	8509367	8510724	B_Cells_Pritchard.2643041	0	.	8509367	8510724	0	1	1357	0
chr2	8512277	8513188	B_cells_Cheung.163659	0	.	8512277	8513188	0	1	911	0
chr2	8512835	8514389	MIP101.58943	0	.	8512835	8514389	0	1	1554	0
chr2	8512836	8513148	A549_Myers.74106	0	.	8512836	8513148	0	1	312	0
chr2	8513340	8514132	B_Cells_Pritchard.2643055	0	.	8513340	8514132	0	1	792	0
chr2	8514837	8515399	B_Cells_Pritchard.2643061	0	.	8514837	8515399	0	1	562	0
chr2	8515186	8521273	MIP101.58944	0	.	8515186	8521273	0	1	6087	0
chr2	8516035	8521263	B_cells_Cheung.163663	0	.	8516035	8521263	0	1	5228	0
chr2	8516399	8519457	CD4_Plagnol_activated.56936	0	.	8516399	8519457	0	1	3058	0
chr2	8517326	8521218	B_Cells_Pritchard.2643071	0	.	8517326	8521218	0	1	3892	0
chr2	8518096	8518817	CD4_Plagnol_resting.55389	0	.	8518096	8518817	0	1	721	0
chr2	8522901	8525897	B_cells_Cheung.163646	0	.	8522901	8525897	0	1	2996	0
chr2	8522950	8525875	B_Cells_Pritchard.2643081	0	.	8522950	8525875	0	1	2925	0
chr2	8523281	8525843	MIP101.58946	0	.	8523281	8525843	0	1	2562	0
chr2	8526175	8532203	B_cells_Cheung.163665	0	.	8526175	8532203	0	1	6028	0
chr2	8526178	8532208	B_Cells_Pritchard.2643083	0	.	8526178	8532208	0	1	6030	0
chr2	8526242	8529772	MIP101.58947	0	.	8526242	8529772	0	1	3530	0
chr2	8526643	8527964	prostate_carcinoma.84581	0	.	8526643	8527964	0	1	1321	0
chr2	8536399	8538178	MIP101.58951	0	.	8536399	8538178	0	1	1779	0
chr2	8536864	8537933	B_Cells_Pritchard.2643091	0	.	8536864	8537933	0	1	1069	0
chr2	8537215	8537910	B_cells_Cheung.163672	0	.	8537215	8537910	0	1	695	0
chr2	8538357	8539132	B_cells_Cheung.163674	0	.	8538357	8539132	0	1	775	0
chr2	8538642	8539688	MIP101.58952	0	.	8538642	8539688	0	1	1046	0
chr2	8539196	8541130	B_cells_Cheung.163647	0	.	8539196	8541130	0	1	1934	0
chr2	8540370	8541015	MIP101.58953	0	.	8540370	8541015	0	1	645	0
chr2	8546064	8547267	B_Cells_Pritchard.2643107	0	.	8546064	8547267	0	1	1203	0
chr2	8551128	8555524	MIP101.58955	0	.	8551128	8555524	0	1	4396	0
chr2	8551751	8552081	B_cells_Cheung.163684	0	.	8551751	8552081	0	1	330	0
chr2	8552221	8553474	prostate_carcinoma.84584	0	.	8552221	8553474	0	1	1253	0
chr2	8559973	8561352	MIP101.58958	0	.	8559973	8561352	0	1	1379	0
chr2	8561700	8562571	MIP101.58959	0	.	8561700	8562571	0	1	871	0
chr2	8563684	8565430	B_Cells_Pritchard.2643177	0	.	8563684	8565430	0	1	1746	0
chr2	8566302	8567052	B_Cells_Pritchard.2643181	0	.	8566302	8567052	0	1	750	0
chr2	8568009	8570759	MIP101.58961	0	.	8568009	8570759	0	1	2750	0
chr2	8570114	8570772	B_cells_Cheung.163690	0	.	8570114	8570772	0	1	658	0
chr2	8571148	8573363	B_Cells_Pritchard.2643197	0	.	8571148	8573363	0	1	2215	0
chr2	8571302	8571708	B_cells_Cheung.163691	0	.	8571302	8571708	0	1	406	0
chr2	8572527	8572908	B_cells_Cheung.163693	0	.	8572527	8572908	0	1	381	0
chr2	8572950	8573500	MIP101.58962	0	.	8572950	8573500	0	1	550	0
chr2	8573757	8574936	MIP101.58963	0	.	8573757	8574936	0	1	1179	0
chr2	8575316	8575837	B_Cells_Pritchard.2643205	0	.	8575316	8575837	0	1	521	0
chr2	8575428	8575979	B_cells_Cheung.163695	0	.	8575428	8575979	0	1	551	0
chr2	8584711	8639073	pHIT000099292	0	-	8584711	8639073	0	3	75,193,80	0,53676,54282
chr2	8587186	8588039	MIP101.58966	0	.	8587186	8588039	0	1	853	0
chr2	8587345	8587656	A549_Myers.74116	0	.	8587345	8587656	0	1	311	0
chr2	8589057	8602879	MIP101.58960	0	-	8589057	8602879	0	2	13623,151	0,13671
chr2	8590335	8595490	prostate_carcinoma.84587	0	.	8590335	8595490	0	1	5155	0
chr2	8590358	8591903	B_cells_Cheung.163701	0	.	8590358	8591903	0	1	1545	0
chr2	8590375	8591913	B_Cells_Pritchard.2643261	0	.	8590375	8591913	0	1	1538	0
chr2	8592867	8595489	B_Cells_Pritchard.2643265	0	.	8592867	8595489	0	1	2622	0
chr2	8592916	8593711	A549_Myers.74117	0	.	8592916	8593711	0	1	795	0
chr2	8595545	8599506	prostate_carcinoma.84588	0	.	8595545	8599506	0	1	3961	0
chr2	8595745	8600242	B_Cells_Pritchard.2643267	0	.	8595745	8600242	0	1	4497	0
chr2	8596729	8597180	B_cells_Cheung.163707	0	.	8596729	8597180	0	1	451	0
chr2	8597639	8598121	A549_Myers.74118	0	.	8597639	8598121	0	1	482	0
chr2	8598918	8599659	B_cells_Cheung.163710	0	.	8598918	8599659	0	1	741	0
chr2	8600157	8602010	prostate_carcinoma.84589	0	.	8600157	8602010	0	1	1853	0
chr2	8600361	8602482	B_Cells_Pritchard.2643269	0	.	8600361	8602482	0	1	2121	0
chr2	8600812	8601223	B_cells_Cheung.163712	0	.	8600812	8601223	0	1	411	0
chr2	8601297	8601672	B_cells_Cheung.163713	0	.	8601297	8601672	0	1	375	0
chr2	8602671	8603956	B_Cells_Pritchard.2643271	0	.	8602671	8603956	0	1	1285	0
chr2	8604272	8605319	MIP101.58968	0	.	8604272	8605319	0	1	1047	0
chr2	8605010	8605313	B_cells_Cheung.163715	0	.	8605010	8605313	0	1	303	0
chr2	8605370	8605767	B_Cells_Pritchard.2643279	0	.	8605370	8605767	0	1	397	0
chr2	8606464	8607132	prostate_carcinoma.84591	0	.	8606464	8607132	0	1	668	0
chr2	8615835	8616158	B_cells_Cheung.163719	0	.	8615835	8616158	0	1	323	0
chr2	8615850	8617061	prostate_carcinoma.84595	0	.	8615850	8617061	0	1	1211	0
chr2	8617389	8641373	HIT000055669	0	-	8617389	8641373	0	6	8143,134,231,142,137,76	0,10639,17102,18761,20102,23908
chr2	8617413	8641373	ENST00000454224	0	-	8617413	8641373	0	6	8119,134,231,142,137,76	0,10615,17078,18737,20078,23884
chr2	8620956	8629638	prostate_carcinoma.84598	0	.	8620956	8629638	0	1	8682	0
chr2	8621748	8623082	H1_polyA+.98703	0	.	8621748	8623082	0	1	1334	0
chr2	8622064	8624014	MIP101.58976	0	.	8622064	8624014	0	1	1950	0
chr2	8623300	8625606	B_Cells_Pritchard.2643355	0	-	8623300	8625606	0	1	2306	0
chr2	8623442	8625501	B_Cells_Pritchard.2643353	0	+	8623442	8625501	0	3	180,423,334	0,247,1725
chr2	8626196	8627382	MIP101.58978	0	.	8626196	8627382	0	1	1186	0
chr2	8626700	8627600	BT474_Burge_Thompson.30838	0	.	8626700	8627600	0	1	900	0
chr2	8626753	8637973	B_Cells_Pritchard.2643333	0	-	8626753	8637973	0	3	1409,231,1823	0,7738,9397
chr2	8629215	8629665	A549_Myers.74129	0	.	8629215	8629665	0	1	450	0
chr2	8633596	8634014	A549_Myers.74132	0	.	8633596	8634014	0	1	418	0
chr2	8633647	8639120	khalil_1000	0	.	8633647	8639120	0	5	497,268,191,50,333	0,792,3782,4413,5140
chr2	8634491	8636888	T47D_Burge_Thompson.26040	0	-	8634491	8636888	0	2	231,738	0,1659
chr2	8634495	8641358	prostate_carcinoma.84599	0	-	8634495	8641358	0	3	227,142,61	0,1655,6802
chr2	8636139	8638901	prostate_carcinoma.84600	0	.	8636139	8638901	0	1	2762	0
chr2	8636142	8636762	B_cells_Cheung.163724	0	.	8636142	8636762	0	1	620	0
chr2	8636689	8638521	H1_polyA+.98704	0	.	8636689	8638521	0	1	1832	0
chr2	8638091	8640043	B_Cells_Pritchard.2643407	0	.	8638091	8640043	0	1	1952	0
chr2	8638978	8640440	prostate_carcinoma.84601	0	.	8638978	8640440	0	1	1462	0
chr2	8639895	8641459	MIP101.58980	0	.	8639895	8641459	0	1	1564	0
chr2	8641341	8641813	A549_Myers.74134	0	.	8641341	8641813	0	1	472	0
chr2	8643432	8644507	MIP101.58982	0	.	8643432	8644507	0	1	1075	0
chr2	8649586	8650739	MIP101.58987	0	.	8649586	8650739	0	1	1153	0
chr2	8652023	8656133	MIP101.58984	0	.	8652023	8656133	0	1	4110	0
chr2	8654116	8654809	MCF10A_Thompson.18788	0	.	8654116	8654809	0	1	693	0
chr2	8654177	8654997	prostate_carcinoma.84602	0	.	8654177	8654997	0	1	820	0
chr2	8654560	8655665	A549_Myers.74139	0	.	8654560	8655665	0	1	1105	0
chr2	8656677	8658595	HepG2_Caltech_ENCODE.32225	0	.	8656677	8658595	0	1	1918	0
chr2	8656869	8658015	prostate_carcinoma.84603	0	.	8656869	8658015	0	1	1146	0
chr2	8668840	8669145	A549_Myers.74144	0	.	8668840	8669145	0	1	305	0
chr2	8673974	8703479	pHIT000003756	0	+	8673974	8703479	0	5	104,199,133,228,233	0,9577,21901,24210,29272
chr2	8680495	8681117	A549_Myers.74147	0	.	8680495	8681117	0	1	622	0
chr2	8684124	8684533	A549_Myers.74152	0	.	8684124	8684533	0	1	409	0
chr2	8684187	8684530	liver_polyA+.112371	0	.	8684187	8684530	0	1	343	0
chr2	8690708	8691227	A549_Myers.74158	0	.	8690708	8691227	0	1	519	0
chr2	8691532	8691866	A549_Myers.74159	0	.	8691532	8691866	0	1	334	0
chr2	8702187	8702888	A549_Myers.74163	0	.	8702187	8702888	0	1	701	0
chr2	8703148	8703500	A549_Myers.74164	0	.	8703148	8703500	0	1	352	0
chr2	8717208	8717729	A549_Myers.74166	0	.	8717208	8717729	0	1	521	0
chr2	8724004	8726092	ZR751_Thompson.21263	0	.	8724004	8726092	0	1	2088	0
chr2	8724154	8728858	MCF7_Burge_Thompson.28146	0	+	8724154	8728858	0	2	1644,2752	0,1952
chr2	8724215	8725307	melanoma_Garraway_short_term_cultures.59109	0	.	8724215	8725307	0	1	1092	0
chr2	8724222	8727874	Rinn_00004690	0	+	8724222	8727874	0	2	655,2856	0,796
chr2	8724229	8727186	brain_AmbionMAQC.39244	0	.	8724229	8727186	0	1	2957	0
chr2	8724308	8725065	NEC_from_H9.65213	0	.	8724308	8725065	0	1	757	0
chr2	8724313	8725516	B_cells_Cheung.163729	0	.	8724313	8725516	0	1	1203	0
chr2	8724317	8725512	K562.39127	0	.	8724317	8725512	0	1	1195	0
chr2	8724456	8725383	testes_Burge.46694	0	.	8724456	8725383	0	1	927	0
chr2	8724742	8727281	BT474_Burge_Thompson.30841	0	.	8724742	8727281	0	1	2539	0
chr2	8724833	8727182	MeWo_Garraway.31918	0	.	8724833	8727182	0	1	2349	0
chr2	8725001	8726598	REMC_BreastStem.42810	0	.	8725001	8726598	0	1	1597	0
chr2	8725080	8725557	HeLa_polyA+_Chen.31367	0	.	8725080	8725557	0	1	477	0
chr2	8725118	8725518	NEC_from_H9.65214	0	.	8725118	8725518	0	1	400	0
chr2	8725563	8725934	K562.39128	0	.	8725563	8725934	0	1	371	0
chr2	8725663	8726067	liver_polyA+.112376	0	.	8725663	8726067	0	1	404	0
chr2	8733696	8734129	prostate_normal.51248	0	.	8733696	8734129	0	1	433	0
chr2	8734246	8734709	A549_Myers.74174	0	.	8734246	8734709	0	1	463	0
chr2	8742661	8769810	pHIT000003758	0	-	8742661	8769810	0	4	23,221,99,107	0,827,26670,27042
chr2	8743217	8744432	BT474_Burge_Thompson.30844	0	.	8743217	8744432	0	1	1215	0
chr2	8750570	8751519	BT474_Burge_Thompson.30845	0	.	8750570	8751519	0	1	949	0
chr2	8750940	8751431	A549_Myers.74180	0	.	8750940	8751431	0	1	491	0
chr2	8756337	8757180	REMC_BreastStem.42815	0	.	8756337	8757180	0	1	843	0
chr2	8759249	8760309	REMC_MyoepithelialBreast.77746	0	.	8759249	8760309	0	1	1060	0
chr2	8769249	8769834	pHIT000099296	0	-	8769249	8769834	0	2	181,131	0,454
chr2	8779091	8780134	CD4_Plagnol_activated.56943	0	.	8779091	8780134	0	1	1043	0
chr2	8899216	8900977	prostate_carcinoma.84617	0	.	8899216	8900977	0	1	1761	0
chr2	8901311	8907363	REMC_LuminalBreast.84012	0	.	8901311	8907363	0	1	6052	0
chr2	8901434	8901966	prostate_carcinoma.84618	0	.	8901434	8901966	0	1	532	0
chr2	8902224	8905655	prostate_carcinoma.84619	0	.	8902224	8905655	0	1	3431	0
chr2	8902268	8902754	prostate_normal.51260	0	.	8902268	8902754	0	1	486	0
chr2	8905755	8907323	prostate_carcinoma.84620	0	.	8905755	8907323	0	1	1568	0
chr2	9154850	9155222	A549_Myers.74215	0	.	9154850	9155222	0	1	372	0
chr2	9160483	9161723	H1_polyA+.98789	0	.	9160483	9161723	0	1	1240	0
chr2	9160532	9161487	BT20_Thompson.19396	0	.	9160532	9161487	0	1	955	0
chr2	9160532	9167437	BT20_Thompson.19397	0	+	9160532	9167437	0	3	355,270,4862	0,1364,2043
chr2	9160544	9167051	MIP101.59010	0	+	9160544	9167051	0	2	1622,4476	0,2031
chr2	9160566	9167438	BT474_Burge_Thompson.30860	0	+	9160566	9167438	0	4	1174,45,308,4863	0,1178,1292,2009
chr2	9161859	9167426	H1_polyA+.98790	0	+	9161859	9167426	0	2	307,4851	0,716
chr2	9162530	9167051	MIP101.59009	0	.	9162530	9167051	0	1	4521	0
chr2	9163623	9164385	MDAMB468_Thompson.21626	0	.	9163623	9164385	0	1	762	0
chr2	9164121	9167902	Rinn_00004136	0	-	9164121	9167902	0	3	734,107,51	0,1872,3730
chr2	9164172	9167459	HIT000055122	0	+	9164172	9167459	0	1	3287	0
chr2	9164466	9165392	MDAMB468_Thompson.21627	0	.	9164466	9165392	0	1	926	0
chr2	9200182	9200566	A549_Myers.74229	0	.	9200182	9200566	0	1	384	0
chr2	9206721	9207247	A549_Myers.74232	0	.	9206721	9207247	0	1	526	0
chr2	9241296	9241644	B_Cells_Pritchard.2644913	0	.	9241296	9241644	0	1	348	0
chr2	9620288	9621867	B_cells_Cheung.164078	0	.	9620288	9621867	0	3	455,423,537	0,532,1042
chr2	9626164	9627504	B_cells_Cheung.164082	0	.	9626164	9627504	0	1	1340	0
chr2	9709490	9710315	prostate_carcinoma.84728	0	-	9709490	9710315	0	2	344,309	0,516
chr2	9731601	9765993	Rinn_00002817	0	+	9731601	9765993	0	5	199,100,148,1096,314	0,10335,11651,18450,34078
chr2	9731602	9765993	ENST00000483023	0	+	9731602	9765993	0	5	198,99,147,1095,313	0,10335,11651,18450,34078
chr2	9733602	9734124	A549_Myers.74337	0	.	9733602	9734124	0	1	522	0
chr2	9737022	9737400	A549_Myers.74338	0	.	9737022	9737400	0	1	378	0
chr2	9751330	9751686	A549_Myers.74341	0	.	9751330	9751686	0	1	356	0
chr2	9755846	9756252	A549_Myers.74342	0	.	9755846	9756252	0	1	406	0
chr2	9762211	9762524	A549_Myers.74345	0	.	9762211	9762524	0	1	313	0
chr2	9769345	9769722	A549_Myers.74347	0	.	9769345	9769722	0	1	377	0
chr2	9794713	9795026	A549_Myers.74350	0	.	9794713	9795026	0	1	313	0
chr2	9801078	9801570	A549_Myers.74352	0	.	9801078	9801570	0	1	492	0
chr2	9808722	9809092	A549_Myers.74355	0	.	9808722	9809092	0	1	370	0
chr2	9810075	9810762	A549_Myers.74356	0	.	9810075	9810762	0	1	687	0
chr2	9811109	9811594	B_Cells_Pritchard.2646409	0	.	9811109	9811594	0	1	485	0
chr2	9811549	9813550	REMC_LuminalBreast.84059	0	.	9811549	9813550	0	1	2001	0
chr2	9811628	9812213	A549_Myers.74359	0	.	9811628	9812213	0	1	585	0
chr2	9811733	9812586	B_Cells_Pritchard.2646411	0	.	9811733	9812586	0	1	853	0
chr2	9811781	9812429	MDAMB468_Thompson.21648	0	.	9811781	9812429	0	1	648	0
chr2	9811794	9812508	B_cells_Cheung.163915	0	.	9811794	9812508	0	1	714	0
chr2	9812011	9813868	prostate_carcinoma.84729	0	.	9812011	9813868	0	1	1857	0
chr2	9813679	9814969	REMC_LuminalBreast.84060	0	.	9813679	9814969	0	1	1290	0
chr2	9814536	9815090	MDAMB468_Thompson.21649	0	.	9814536	9815090	0	1	554	0
chr2	9825372	9825901	A549_Myers.74365	0	.	9825372	9825901	0	1	529	0
chr2	9827264	9828696	A549_Myers.74367	0	.	9827264	9828696	0	1	1432	0
chr2	9831319	9831785	B_Cells_Pritchard.2646495	0	.	9831319	9831785	0	1	466	0
chr2	9835583	9836092	A549_Myers.74370	0	.	9835583	9836092	0	1	509	0
chr2	9851921	9852275	A549_Myers.74374	0	.	9851921	9852275	0	1	354	0
chr2	9858679	9859149	A549_Myers.74378	0	.	9858679	9859149	0	1	470	0
chr2	9867139	9867473	A549_Myers.74380	0	.	9867139	9867473	0	1	334	0
chr2	9871923	9872542	A549_Myers.74384	0	.	9871923	9872542	0	1	619	0
chr2	9992349	9996117	B_Cells_Pritchard.2646797	0	-	9992349	9996117	0	2	1328,2207	0,1561
chr2	9993339	9996139	B_cells_Cheung.163946	0	.	9993339	9996139	0	1	2800	0
chr2	9993780	9996065	H1_polyA+.98855	0	.	9993780	9996065	0	1	2285	0
chr2	9993789	9995971	REMC_BreastStem.42847	0	.	9993789	9995971	0	1	2182	0
chr2	9993799	9996043	CD4_Plagnol_activated.57016	0	.	9993799	9996043	0	1	2244	0
chr2	9993830	9996034	HepG2_Caltech_ENCODE.32269	0	.	9993830	9996034	0	1	2204	0
chr2	9993905	9996044	MDAMB231_Thompson.19334	0	.	9993905	9996044	0	1	2139	0
chr2	9993909	9996047	melanoma_Garraway_short_term_cultures.59223	0	.	9993909	9996047	0	1	2138	0
chr2	9993912	9996139	CD4_Plagnol_resting.55447	0	.	9993912	9996139	0	1	2227	0
chr2	9993913	9996021	MDAMB468_Thompson.21659	0	.	9993913	9996021	0	1	2108	0
chr2	9993914	9995428	ZR751_Thompson.21289	0	.	9993914	9995428	0	1	1514	0
chr2	9993915	9996040	MCF7_Burge_Thompson.28195	0	.	9993915	9996040	0	1	2125	0
chr2	9993925	9996284	prostate_carcinoma.84737	0	.	9993925	9996284	0	1	2359	0
chr2	9993930	9995988	H9_polyA+.39507	0	.	9993930	9995988	0	1	2058	0
chr2	9993949	9994776	MeI_Garraway.15284	0	.	9993949	9994776	0	1	827	0
chr2	9993964	9996043	HeLa_polyA+_Chen.31391	0	.	9993964	9996043	0	1	2079	0
chr2	9993968	9996042	MCF10A_Thompson.18802	0	.	9993968	9996042	0	1	2074	0
chr2	9993975	9996046	prostate_normal.51313	0	.	9993975	9996046	0	1	2071	0
chr2	9994064	9995164	BT474_Burge_Thompson.30869	0	.	9994064	9995164	0	1	1100	0
chr2	9994327	9995916	MeWo_Garraway.31948	0	.	9994327	9995916	0	1	1589	0
chr2	9995238	9996091	BT474_Burge_Thompson.30870	0	.	9995238	9996091	0	1	853	0
chr2	9995248	9995982	BT20_Thompson.19404	0	.	9995248	9995982	0	1	734	0
chr2	9995472	9995782	breast_Burge.36059	0	.	9995472	9995782	0	1	310	0
chr2	9997208	9999596	pHIT000003774	0	-	9997208	9999596	0	2	208,122	0,2266
chr2	10062886	10063405	liver_polyA+.112535	0	.	10062886	10063405	0	1	519	0
chr2	10064234	10064774	A549_Myers.74415	0	.	10064234	10064774	0	1	540	0
chr2	10069079	10069585	A549_Myers.74418	0	.	10069079	10069585	0	1	506	0
chr2	10074437	10074900	B_cells_Cheung.163956	0	.	10074437	10074900	0	1	463	0
chr2	10076366	10078491	MIP101.59108	0	.	10076366	10078491	0	1	2125	0
chr2	10079108	10081929	MIP101.59109	0	.	10079108	10081929	0	1	2821	0
chr2	10080268	10080634	liver_polyA+.112541	0	.	10080268	10080634	0	1	366	0
chr2	10086889	10088458	K562.39201	0	.	10086889	10088458	0	1	1569	0
chr2	10087030	10087505	B_Cells_Pritchard.2647177	0	.	10087030	10087505	0	1	475	0
chr2	10091913	10094735	Rinn_00004140	0	-	10091913	10094735	0	2	216,485	0,2337
chr2	10093497	10094145	K562.39203	0	.	10093497	10094145	0	1	648	0
chr2	10093670	10094626	A549_Myers.74424	0	.	10093670	10094626	0	1	956	0
chr2	10094954	10095906	K562.39204	0	.	10094954	10095906	0	1	952	0
chr2	10096564	10098948	B_cells_Cheung.163964	0	.	10096564	10098948	0	1	2384	0
chr2	10096666	10099766	liver_polyA+.112542	0	-	10096666	10099766	0	2	1237,435	0,2665
chr2	10096682	10098987	REMC_MyoepithelialBreast.77805	0	.	10096682	10098987	0	1	2305	0
chr2	10096706	10098830	HeLa_polyA+_Chen.31415	0	.	10096706	10098830	0	1	2124	0
chr2	10096726	10099015	REMC_BreastStem.42850	0	.	10096726	10099015	0	1	2289	0
chr2	10096733	10099257	K562.39205	0	.	10096733	10099257	0	1	2524	0
chr2	10097553	10097905	colon_Burge.33503	0	.	10097553	10097905	0	1	352	0
chr2	10097992	10098767	brain_AmbionMAQC.39320	0	.	10097992	10098767	0	1	775	0
chr2	10098000	10098832	BT474_Burge_Thompson.30874	0	.	10098000	10098832	0	1	832	0
chr2	10098013	10098816	MDAMB231_Thompson.19349	0	.	10098013	10098816	0	1	803	0
chr2	10098094	10098811	H9_polyA+.39516	0	.	10098094	10098811	0	1	717	0
chr2	10098150	10098839	melanoma_Garraway_short_term_cultures.59228	0	.	10098150	10098839	0	1	689	0
chr2	10098150	10098730	MDAMB468_Thompson.21654	0	.	10098150	10098730	0	1	580	0
chr2	10098157	10098825	MIP101.59112	0	.	10098157	10098825	0	1	668	0
chr2	10098166	10098785	MeWo_Garraway.31950	0	.	10098166	10098785	0	1	619	0
chr2	10098185	10098799	NEC_from_H9.65343	0	.	10098185	10098799	0	1	614	0
chr2	10098190	10098636	A549_Myers.74428	0	.	10098190	10098636	0	1	446	0
chr2	10098257	10098792	BT20_Thompson.19408	0	.	10098257	10098792	0	1	535	0
chr2	10098921	10100067	HeLa_polyA+_Chen.31418	0	.	10098921	10100067	0	1	1146	0
chr2	10099066	10099755	B_cells_Cheung.163965	0	.	10099066	10099755	0	1	689	0
chr2	10099088	10099867	NEC_from_H9.65341	0	.	10099088	10099867	0	1	779	0
chr2	10099096	10099928	MeWo_Garraway.31951	0	.	10099096	10099928	0	1	832	0
chr2	10099149	10100050	MCF7_Burge_Thompson.28199	0	.	10099149	10100050	0	1	901	0
chr2	10099272	10099897	brain_AmbionMAQC.39322	0	.	10099272	10099897	0	1	625	0
chr2	10151034	10151887	B_Cells_Pritchard.2647303	0	.	10151034	10151887	0	1	853	0
chr2	10152016	10152579	B_Cells_Pritchard.2647305	0	.	10152016	10152579	0	1	563	0
chr2	10153697	10154612	B_Cells_Pritchard.2647313	0	.	10153697	10154612	0	1	915	0
chr2	10162212	10163784	H1_polyA+.98860	0	.	10162212	10163784	0	1	1572	0
chr2	10162339	10163791	B_cells_Cheung.163976	0	.	10162339	10163791	0	1	1452	0
chr2	10164304	10165289	B_cells_Cheung.163977	0	.	10164304	10165289	0	1	985	0
chr2	10164349	10173357	K562.39198	0	-	10164349	10173357	0	2	439,47	0,8961
chr2	10164355	10165843	H1_polyA+.98861	0	.	10164355	10165843	0	1	1488	0
chr2	10178034	10178493	HeLa_polyA-_Chen.16613	0	.	10178034	10178493	0	1	459	0
chr2	10270362	10276573	BT474_Burge_Thompson.30924	0	+	10270362	10276573	0	2	795,2830	0,3381
chr2	10270910	10276765	B_Cells_Pritchard.2647407	0	+	10270910	10276765	0	2	376,3853	0,2002
chr2	10271380	10276907	H1_polyA+.98880	0	.	10271380	10276907	0	1	5527	0
chr2	10271484	10272464	B_cells_Cheung.164026	0	.	10271484	10272464	0	1	980	0
chr2	10271642	10272493	MIP101.59152	0	.	10271642	10272493	0	1	851	0
chr2	10271688	10277018	melanoma_Garraway_short_term_cultures.59278	0	.	10271688	10277018	0	1	5330	0
chr2	10271775	10272460	BT474_Burge_Thompson.30927	0	.	10271775	10272460	0	1	685	0
chr2	10272537	10274180	B_cells_Cheung.164027	0	.	10272537	10274180	0	1	1643	0
chr2	10272644	10276613	MIP101.59153	0	.	10272644	10276613	0	1	3969	0
chr2	10272663	10273264	K562.39236	0	.	10272663	10273264	0	1	601	0
chr2	10272732	10273078	A549_Myers.74497	0	.	10272732	10273078	0	1	346	0
chr2	10272742	10273364	H9_polyA+.39574	0	.	10272742	10273364	0	1	622	0
chr2	10272770	10273592	BT474_Burge_Thompson.30928	0	.	10272770	10273592	0	1	822	0
chr2	10272789	10273686	HeLa_polyA+_Chen.31480	0	.	10272789	10273686	0	1	897	0
chr2	10273642	10276573	BT474_Burge_Thompson.30926	0	.	10273642	10276573	0	1	2931	0
chr2	10273744	10276966	HepG2_Caltech_ENCODE.32293	0	.	10273744	10276966	0	1	3222	0
chr2	10273761	10275400	K562.39237	0	.	10273761	10275400	0	1	1639	0
chr2	10274258	10276613	H9_polyA+.39578	0	.	10274258	10276613	0	1	2355	0
chr2	10274282	10275908	B_cells_Cheung.164028	0	.	10274282	10275908	0	1	1626	0
chr2	10274558	10275456	HeLa_polyA+_Chen.31482	0	.	10274558	10275456	0	1	898	0
chr2	10274876	10275531	MDAMB468_Thompson.21690	0	.	10274876	10275531	0	1	655	0
chr2	10275530	10276116	K562.39238	0	.	10275530	10276116	0	1	586	0
chr2	10275535	10276073	HeLa_polyA+_Chen.31481	0	.	10275535	10276073	0	1	538	0
chr2	10275540	10276020	A549_Myers.74495	0	.	10275540	10276020	0	1	480	0
chr2	10283292	10283743	A549_Myers.74500	0	.	10283292	10283743	0	1	451	0
chr2	10291307	10291837	A549_Myers.74502	0	.	10291307	10291837	0	1	530	0
chr2	10293269	10293856	A549_Myers.74503	0	.	10293269	10293856	0	1	587	0
chr2	10297981	10298590	A549_Myers.74505	0	.	10297981	10298590	0	1	609	0
chr2	10313680	10314132	A549_Myers.74510	0	.	10313680	10314132	0	1	452	0
chr2	10314950	10315493	A549_Myers.74512	0	.	10314950	10315493	0	1	543	0
chr2	10321960	10322416	A549_Myers.74513	0	.	10321960	10322416	0	1	456	0
chr2	10329011	10329501	A549_Myers.74519	0	.	10329011	10329501	0	1	490	0
chr2	10487423	10490055	REMC_MyoepithelialBreast.77867	0	.	10487423	10490055	0	1	2632	0
chr2	10487459	10489632	B_cells_Cheung.164370	0	.	10487459	10489632	0	3	807,372,840	0,905,1333
chr2	10488347	10489906	REMC_LuminalBreast.84105	0	.	10488347	10489906	0	1	1559	0
chr2	10488405	10490345	REMC_BreastStem.42865	0	.	10488405	10490345	0	1	1940	0
chr2	10490679	10491466	REMC_LuminalBreast.84106	0	.	10490679	10491466	0	1	787	0
chr2	10490689	10491710	HeLa_polyA+_Chen.31486	0	.	10490689	10491710	0	1	1021	0
chr2	10490694	10491732	B_Cells_Pritchard.2648221	0	.	10490694	10491732	0	1	1038	0
chr2	10490707	10491747	REMC_BreastStem.42866	0	.	10490707	10491747	0	1	1040	0
chr2	10490844	10491398	brain_AmbionMAQC.39334	0	.	10490844	10491398	0	1	554	0
chr2	10491672	10492434	A549_Myers.74613	0	.	10491672	10492434	0	1	762	0
chr2	10492299	10495159	REMC_BreastStem.42867	0	.	10492299	10495159	0	1	2860	0
chr2	10492417	10493210	REMC_LuminalBreast.84107	0	.	10492417	10493210	0	1	793	0
chr2	10492881	10494659	B_cells_Cheung.164371	0	.	10492881	10494659	0	1	1778	0
chr2	10493223	10493995	prostate_normal.51339	0	.	10493223	10493995	0	1	772	0
chr2	10493439	10494209	A549_Myers.74616	0	.	10493439	10494209	0	1	770	0
chr2	10519932	10520689	A549_Myers.74622	0	.	10519932	10520689	0	1	757	0
chr2	10527223	10527540	A549_Myers.74623	0	.	10527223	10527540	0	1	317	0
chr2	10552002	10552480	A549_Myers.74628	0	.	10552002	10552480	0	1	478	0
chr2	10555335	10556001	A549_Myers.74629	0	.	10555335	10556001	0	1	666	0
chr2	10557443	10558106	A549_Myers.74630	0	.	10557443	10558106	0	1	663	0
chr2	10575522	10576723	B_Cells_Pritchard.2648507	0	.	10575522	10576723	0	1	1201	0
chr2	10581918	10582280	A549_Myers.74633	0	.	10581918	10582280	0	1	362	0
chr2	10582335	10583958	REMC_LuminalBreast.84120	0	.	10582335	10583958	0	1	1623	0
chr2	10582345	10584574	REMC_MyoepithelialBreast.77871	0	.	10582345	10584574	0	1	2229	0
chr2	10583286	10583625	B_cells_Cheung.164092	0	.	10583286	10583625	0	1	339	0
chr2	10583452	10584132	B_Cells_Pritchard.2648543	0	.	10583452	10584132	0	1	680	0
chr2	10587553	10588874	REMC_MyoepithelialBreast.77874	0	.	10587553	10588874	0	1	1321	0
chr2	10590260	10590982	REMC_MyoepithelialBreast.77875	0	.	10590260	10590982	0	1	722	0
chr2	10591200	10593684	REMC_MyoepithelialBreast.77876	0	.	10591200	10593684	0	1	2484	0
chr2	10591763	10593228	REMC_LuminalBreast.84123	0	.	10591763	10593228	0	1	1465	0
chr2	10593324	10593635	A549_Myers.74636	0	.	10593324	10593635	0	1	311	0
chr2	10603841	10605363	REMC_MyoepithelialBreast.77880	0	.	10603841	10605363	0	1	1522	0
chr2	10605836	10608484	REMC_MyoepithelialBreast.77881	0	.	10605836	10608484	0	1	2648	0
chr2	10606520	10608174	REMC_LuminalBreast.84127	0	.	10606520	10608174	0	1	1654	0
chr2	10608913	10610096	REMC_MyoepithelialBreast.77882	0	.	10608913	10610096	0	1	1183	0
chr2	10609059	10609419	A549_Myers.74639	0	.	10609059	10609419	0	1	360	0
chr2	10609806	10611239	REMC_LuminalBreast.84128	0	.	10609806	10611239	0	1	1433	0
chr2	10610236	10611629	REMC_MyoepithelialBreast.77883	0	.	10610236	10611629	0	1	1393	0
chr2	10611874	10615425	REMC_MyoepithelialBreast.77884	0	.	10611874	10615425	0	1	3551	0
chr2	10613662	10614496	B_Cells_Pritchard.2648643	0	.	10613662	10614496	0	1	834	0
chr2	10614046	10617680	REMC_LuminalBreast.84142	0	.	10614046	10617680	0	1	3634	0
chr2	10615214	10615850	A549_Myers.74641	0	.	10615214	10615850	0	1	636	0
chr2	10615577	10616858	REMC_BreastStem.42879	0	.	10615577	10616858	0	1	1281	0
chr2	10615943	10616306	A549_Myers.74642	0	.	10615943	10616306	0	1	363	0
chr2	10617636	10624700	B_Cells_Pritchard.2648659	0	+	10617636	10624700	0	5	879,255,647,2253,544	0,2233,2871,4199,6520
chr2	10617751	10618094	khalil_1002	0	.	10617751	10618094	0	1	343	0
chr2	10622629	10624459	HepG2_Caltech_ENCODE.32335	0	.	10622629	10624459	0	1	1830	0
chr2	10623473	10624458	HeLa_polyA+_Chen.31490	0	.	10623473	10624458	0	1	985	0
chr2	10903173	10903609	A549_Myers.74684	0	.	10903173	10903609	0	1	436	0
chr2	10935875	10937109	B_Cells_Pritchard.2649333	0	+	10935875	10937109	0	1	1234	0
chr2	10944699	10945014	B_Cells_Pritchard.2649361	0	.	10944699	10945014	0	1	315	0
chr2	10973248	10973564	A549_Myers.74693	0	.	10973248	10973564	0	1	316	0
chr2	10978652	10978980	A549_Myers.74695	0	.	10978652	10978980	0	1	328	0
chr2	10982545	10982954	A549_Myers.74697	0	.	10982545	10982954	0	1	409	0
chr2	10989403	10989721	A549_Myers.74698	0	.	10989403	10989721	0	1	318	0
chr2	10989860	10990213	A549_Myers.74699	0	.	10989860	10990213	0	1	353	0
chr2	10990463	10990893	A549_Myers.74700	0	.	10990463	10990893	0	1	430	0
chr2	10991892	10992288	A549_Myers.74701	0	.	10991892	10992288	0	1	396	0
chr2	10993667	10994390	A549_Myers.74704	0	.	10993667	10994390	0	1	723	0
chr2	11019647	11020081	A549_Myers.74708	0	.	11019647	11020081	0	1	434	0
chr2	11050253	11051737	BT20_Thompson.19440	0	.	11050253	11051737	0	1	1484	0
chr2	11052015	11053656	BT20_Thompson.19441	0	.	11052015	11053656	0	1	1641	0
chr2	11053099	11136970	pHIT000099323	0	-	11053099	11136970	0	2	162,162	0,83709
chr2	11063068	11063490	A549_Myers.74713	0	.	11063068	11063490	0	1	422	0
chr2	11081275	11083502	A549_Myers.74714	0	+	11081275	11083502	0	2	567,120	0,2107
chr2	11130752	11131154	A549_Myers.74715	0	.	11130752	11131154	0	1	402	0
chr2	11156695	11157967	brain_AmbionMAQC.39366	0	.	11156695	11157967	0	1	1272	0
chr2	11169668	11170944	brain_AmbionMAQC.39368	0	.	11169668	11170944	0	1	1276	0
chr2	11170066	11170736	ZR751_Thompson.21311	0	.	11170066	11170736	0	1	670	0
chr2	11187416	11187736	A549_Myers.74724	0	.	11187416	11187736	0	1	320	0
chr2	11422995	11423391	A549_Myers.74749	0	.	11422995	11423391	0	1	396	0
chr2	11429102	11463955	pHIT000003802	0	-	11429102	11463955	0	4	251,70,112,86	0,1272,20209,34767
chr2	11430428	11433153	REMC_LuminalBreast.84199	0	.	11430428	11433153	0	1	2725	0
chr2	11431805	11432123	kidney_Gilad.72790	0	.	11431805	11432123	0	1	318	0
chr2	11447823	11449782	REMC_LuminalBreast.84201	0	.	11447823	11449782	0	1	1959	0
chr2	11453953	11457225	REMC_LuminalBreast.84203	0	.	11453953	11457225	0	1	3272	0
chr2	11464934	11470624	REMC_BreastStem.42898	0	.	11464934	11470624	0	1	5690	0
chr2	11465396	11470620	REMC_MyoepithelialBreast.77962	0	.	11465396	11470620	0	1	5224	0
chr2	11466823	11469043	REMC_LuminalBreast.84208	0	.	11466823	11469043	0	1	2220	0
chr2	11468493	11470624	REMC_BreastStem.42899	0	+	11468493	11470624	0	2	41,1892	0,239
chr2	11469158	11470831	REMC_LuminalBreast.84209	0	.	11469158	11470831	0	1	1673	0
chr2	11474440	11474897	B_cells_Cheung.164217	0	.	11474440	11474897	0	1	457	0
chr2	11477378	11487205	REMC_LuminalBreast.84213	0	.	11477378	11487205	0	1	9827	0
chr2	11477813	11478950	REMC_BreastStem.42904	0	.	11477813	11478950	0	1	1137	0
chr2	11478081	11479829	H1_polyA+.99078	0	.	11478081	11479829	0	1	1748	0
chr2	11479878	11488187	REMC_BreastStem.42906	0	.	11479878	11488187	0	1	8309	0
chr2	11480113	11481966	REMC_MyoepithelialBreast.77967	0	.	11480113	11481966	0	1	1853	0
chr2	11482468	11484800	REMC_MyoepithelialBreast.77968	0	.	11482468	11484800	0	1	2332	0
chr2	11482625	11483011	B_cells_Cheung.164222	0	.	11482625	11483011	0	1	386	0
chr2	11483468	11484448	Rinn_00003578	0	+	11483468	11484448	0	2	285,587	0,393
chr2	11483562	11484151	brain_AmbionMAQC.39385	0	.	11483562	11484151	0	1	589	0
chr2	11483611	11484978	H1_polyA+.99080	0	.	11483611	11484978	0	1	1367	0
chr2	11487265	11488177	REMC_LuminalBreast.84214	0	.	11487265	11488177	0	1	912	0
chr2	11487410	11488145	B_cells_Cheung.164225	0	.	11487410	11488145	0	1	735	0
chr2	11497297	11498456	B_Cells_Pritchard.2651065	0	.	11497297	11498456	0	1	1159	0
chr2	11499113	11500410	REMC_BreastStem.42912	0	.	11499113	11500410	0	1	1297	0
chr2	11499120	11500933	H1_polyA+.99087	0	.	11499120	11500933	0	1	1813	0
chr2	11536400	11537261	B_cells_Cheung.164259	0	.	11536400	11537261	0	1	861	0
chr2	11536412	11537426	B_Cells_Pritchard.2651273	0	.	11536412	11537426	0	1	1014	0
chr2	11537789	11541384	MCF7_Burge_Thompson.28824	0	.	11537789	11541384	0	1	3595	0
chr2	11538177	11541157	T47D_Burge_Thompson.26321	0	.	11538177	11541157	0	1	2980	0
chr2	11538177	11541337	T47D_Burge_Thompson.26322	0	+	11538177	11541337	0	2	2854,75	0,3085
chr2	11539295	11539878	BT474_Burge_Thompson.30967	0	.	11539295	11539878	0	1	583	0
chr2	11539517	11540617	ZR751_Thompson.21320	0	.	11539517	11540617	0	1	1100	0
chr2	11539584	11540175	prostate_carcinoma.84898	0	.	11539584	11540175	0	1	591	0
chr2	11539885	11540512	A549_Myers.74781	0	.	11539885	11540512	0	1	627	0
chr2	11539964	11541388	BT474_Burge_Thompson.30970	0	.	11539964	11541388	0	1	1424	0
chr2	11540165	11542097	HepG2_Caltech_ENCODE.32391	0	.	11540165	11542097	0	1	1932	0
chr2	11540165	11542567	HepG2_Caltech_ENCODE.32392	0	+	11540165	11542567	0	2	375,23	0,2379
chr2	11540629	11540987	prostate_normal.51391	0	.	11540629	11540987	0	1	358	0
chr2	11540665	11541438	prostate_carcinoma.84899	0	.	11540665	11541438	0	1	773	0
chr2	11540705	11541259	H9_polyA+.39623	0	.	11540705	11541259	0	1	554	0
chr2	11544476	11548271	REMC_LuminalBreast.84228	0	.	11544476	11548271	0	1	3795	0
chr2	11546031	11546462	REMC_BreastStem.42922	0	.	11546031	11546462	0	1	431	0
chr2	11549754	11550810	REMC_LuminalBreast.84230	0	.	11549754	11550810	0	1	1056	0
chr2	11551332	11553168	REMC_LuminalBreast.84231	0	.	11551332	11553168	0	1	1836	0
chr2	11552256	11553047	H1_polyA+.99102	0	.	11552256	11553047	0	1	791	0
chr2	11553403	11553711	MCF7_Burge_Thompson.28826	0	.	11553403	11553711	0	1	308	0
chr2	11571240	11572287	HepG2_Caltech_ENCODE.32396	0	.	11571240	11572287	0	1	1047	0
chr2	11571482	11572799	H1_polyA+.99109	0	.	11571482	11572799	0	1	1317	0
chr2	11887572	11887921	A549_Myers.74858	0	.	11887572	11887921	0	1	349	0
chr2	11921242	11922081	B_Cells_Pritchard.2652233	0	.	11921242	11922081	0	1	839	0
chr2	11932406	11932757	B_cells_Cheung.165832	0	.	11932406	11932757	0	1	351	0
chr2	11934879	11936653	B_cells_Cheung.165835	0	.	11934879	11936653	0	1	1774	0
chr2	11948911	11951912	B_cells_Cheung.165846	0	.	11948911	11951912	0	1	3001	0
chr2	11953444	11958117	B_cells_Cheung.165848	0	.	11953444	11958117	0	1	4673	0
chr2	11959837	11961031	B_cells_Cheung.165851	0	.	11959837	11961031	0	1	1194	0
chr2	11960223	11961245	B_Cells_Pritchard.2652385	0	.	11960223	11961245	0	1	1022	0
chr2	11964451	11965418	B_cells_Cheung.165857	0	.	11964451	11965418	0	1	967	0
chr2	11971381	11973549	B_cells_Cheung.165864	0	.	11971381	11973549	0	1	2168	0
chr2	11975448	11976434	B_cells_Cheung.165866	0	.	11975448	11976434	0	1	986	0
chr2	11977676	11981092	B_cells_Cheung.165869	0	.	11977676	11981092	0	1	3416	0
chr2	11981349	11983637	B_cells_Cheung.165870	0	.	11981349	11983637	0	1	2288	0
chr2	11981367	11984117	B_Cells_Pritchard.2652471	0	.	11981367	11984117	0	1	2750	0
chr2	11987636	11989067	B_Cells_Pritchard.2652485	0	.	11987636	11989067	0	1	1431	0
chr2	11988468	11989055	B_cells_Cheung.165877	0	.	11988468	11989055	0	2	229,148	0,439
chr2	11989583	11991909	B_cells_Cheung.165879	0	.	11989583	11991909	0	1	2326	0
chr2	11991960	11992687	B_cells_Cheung.165880	0	.	11991960	11992687	0	1	727	0
chr2	12008313	12008846	B_cells_Cheung.165899	0	.	12008313	12008846	0	1	533	0
chr2	12011546	12012354	B_cells_Cheung.165903	0	.	12011546	12012354	0	1	808	0
chr2	12040375	12042081	B_Cells_Pritchard.2652723	0	.	12040375	12042081	0	1	1706	0
chr2	12040382	12043140	B_cells_Cheung.165921	0	.	12040382	12043140	0	1	2758	0
chr2	12042207	12043423	B_Cells_Pritchard.2652725	0	.	12042207	12043423	0	1	1216	0
chr2	12044149	12045448	B_cells_Cheung.165922	0	.	12044149	12045448	0	1	1299	0
chr2	12044226	12045699	B_Cells_Pritchard.2652731	0	.	12044226	12045699	0	1	1473	0
chr2	12047008	12047792	B_cells_Cheung.165924	0	.	12047008	12047792	0	1	784	0
chr2	12050941	12052850	B_cells_Cheung.165928	0	.	12050941	12052850	0	1	1909	0
chr2	12058367	12058826	B_cells_Cheung.165929	0	.	12058367	12058826	0	1	459	0
chr2	12076715	12078158	B_Cells_Pritchard.2652747	0	.	12076715	12078158	0	1	1443	0
chr2	12080329	12080851	liver_polyA+.112849	0	.	12080329	12080851	0	1	522	0
chr2	12080329	12080851	kidney_Gilad.72824	0	.	12080329	12080851	0	1	522	0
chr2	12095870	12105628	B_cells_Cheung.165935	0	.	12095870	12105628	0	1	9758	0
chr2	12099426	12100277	B_Cells_Pritchard.2652803	0	.	12099426	12100277	0	1	851	0
chr2	12103755	12104555	B_Cells_Pritchard.2652815	0	.	12103755	12104555	0	1	800	0
chr2	12113177	12122283	B_cells_Cheung.165939	0	.	12113177	12122283	0	1	9106	0
chr2	12117605	12118970	B_Cells_Pritchard.2652865	0	.	12117605	12118970	0	1	1365	0
chr2	12121342	12122518	B_Cells_Pritchard.2652877	0	.	12121342	12122518	0	1	1176	0
chr2	12122450	12125838	B_cells_Cheung.165940	0	.	12122450	12125838	0	1	3388	0
chr2	12124301	12125831	B_Cells_Pritchard.2652885	0	.	12124301	12125831	0	1	1530	0
chr2	12126118	12133196	B_cells_Cheung.165941	0	-	12126118	12133196	0	2	5263,1643	0,5435
chr2	12126936	12129374	B_Cells_Pritchard.2652889	0	.	12126936	12129374	0	1	2438	0
chr2	12129604	12139930	B_Cells_Pritchard.2652893	0	-	12129604	12139930	0	5	1177,1670,525,1182,1118	0,1264,7250,7841,9208
chr2	12133638	12140407	B_cells_Cheung.165942	0	.	12133638	12140407	0	1	6769	0
chr2	12140523	12142664	B_cells_Cheung.165943	0	.	12140523	12142664	0	1	2141	0
chr2	12140830	12141708	B_Cells_Pritchard.2652891	0	+	12140830	12141708	0	1	878	0
chr2	12142907	12144202	B_cells_Cheung.165944	0	.	12142907	12144202	0	1	1295	0
chr2	12150257	12156377	B_cells_Cheung.165948	0	.	12150257	12156377	0	1	6120	0
chr2	12156838	12160517	B_cells_Cheung.165949	0	.	12156838	12160517	0	1	3679	0
chr2	12158171	12159174	B_Cells_Pritchard.2652949	0	.	12158171	12159174	0	1	1003	0
chr2	12162132	12178046	B_cells_Cheung.165827	0	.	12162132	12178046	0	1	15914	0
chr2	12167559	12171547	B_Cells_Pritchard.2652963	0	.	12167559	12171547	0	1	3988	0
chr2	12169639	12169982	MB435_Burge.38094	0	.	12169639	12169982	0	1	343	0
chr2	12171757	12173310	B_Cells_Pritchard.2652965	0	.	12171757	12173310	0	1	1553	0
chr2	12178187	12180087	B_cells_Cheung.165951	0	.	12178187	12180087	0	1	1900	0
chr2	12178775	12179893	B_Cells_Pritchard.2652983	0	.	12178775	12179893	0	1	1118	0
chr2	12185815	12221388	pHIT000099341	0	-	12185815	12221388	0	4	106,127,184,195	0,16466,27571,35378
chr2	12190423	12191681	B_Cells_Pritchard.2653005	0	.	12190423	12191681	0	1	1258	0
chr2	12198086	12198758	B_cells_Cheung.165953	0	.	12198086	12198758	0	1	672	0
chr2	12202044	12204928	B_cells_Cheung.165955	0	.	12202044	12204928	0	1	2884	0
chr2	12203356	12203826	B_Cells_Pritchard.2653051	0	.	12203356	12203826	0	1	470	0
chr2	12204014	12204901	B_Cells_Pritchard.2653053	0	.	12204014	12204901	0	1	887	0
chr2	12227787	12228196	B_Cells_Pritchard.2653123	0	.	12227787	12228196	0	1	409	0
chr2	12228731	12229508	B_Cells_Pritchard.2653127	0	.	12228731	12229508	0	1	777	0
chr2	12232130	12234241	B_Cells_Pritchard.2653139	0	.	12232130	12234241	0	1	2111	0
chr2	12233881	12234241	MB435_Burge.38103	0	.	12233881	12234241	0	1	360	0
chr2	12251789	12263416	B_cells_Cheung.165965	0	.	12251789	12263416	0	1	11627	0
chr2	12253474	12262702	B_Cells_Pritchard.2653205	0	.	12253474	12262702	0	1	9228	0
chr2	12271862	12274229	B_cells_Cheung.165969	0	.	12271862	12274229	0	1	2367	0
chr2	12279244	12282610	B_cells_Cheung.165972	0	.	12279244	12282610	0	1	3366	0
chr2	12305190	12308022	B_cells_Cheung.165985	0	.	12305190	12308022	0	1	2832	0
chr2	12308192	12310747	B_cells_Cheung.165986	0	.	12308192	12310747	0	1	2555	0
chr2	12336623	12338069	B_cells_Cheung.166000	0	.	12336623	12338069	0	1	1446	0
chr2	12341000	12341972	B_Cells_Pritchard.2653545	0	.	12341000	12341972	0	1	972	0
chr2	12344963	12345530	B_cells_Cheung.166004	0	.	12344963	12345530	0	1	567	0
chr2	12346256	12347100	B_Cells_Pritchard.2653563	0	.	12346256	12347100	0	1	844	0
chr2	12348549	12352357	B_cells_Cheung.166007	0	.	12348549	12352357	0	1	3808	0
chr2	12353537	12356170	B_cells_Cheung.166009	0	.	12353537	12356170	0	1	2633	0
chr2	12358750	12360062	B_cells_Cheung.166012	0	.	12358750	12360062	0	1	1312	0
chr2	12361027	12361929	B_cells_Cheung.166013	0	.	12361027	12361929	0	1	902	0
chr2	12362540	12363569	B_cells_Cheung.166014	0	.	12362540	12363569	0	1	1029	0
chr2	12363670	12364828	B_cells_Cheung.166015	0	.	12363670	12364828	0	1	1158	0
chr2	12369522	12373188	B_Cells_Pritchard.2653595	0	.	12369522	12373188	0	1	3666	0
chr2	12371281	12373297	melanoma_Garraway_short_term_cultures.59354	0	.	12371281	12373297	0	1	2016	0
chr2	12371732	12372882	MeWo_Garraway.32043	0	.	12371732	12372882	0	1	1150	0
chr2	12371796	12373432	MeI_Garraway.15331	0	.	12371796	12373432	0	1	1636	0
chr2	12371803	12372460	MB435_Burge.38105	0	.	12371803	12372460	0	1	657	0
chr2	12373796	12374668	melanoma_Garraway_short_term_cultures.59356	0	.	12373796	12374668	0	1	872	0
chr2	12375102	12379855	melanoma_Garraway_short_term_cultures.59355	0	.	12375102	12379855	0	1	4753	0
chr2	12382703	12383444	melanoma_Garraway_short_term_cultures.59359	0	.	12382703	12383444	0	1	741	0
chr2	12392273	12393648	melanoma_Garraway_short_term_cultures.59364	0	.	12392273	12393648	0	1	1375	0
chr2	12395093	12395523	B_Cells_Pritchard.2653691	0	-	12395093	12395523	0	1	430	0
chr2	12405881	12411112	B_cells_Cheung.166022	0	.	12405881	12411112	0	1	5231	0
chr2	12408499	12410520	melanoma_Garraway_short_term_cultures.59369	0	.	12408499	12410520	0	1	2021	0
chr2	12415819	12418111	B_cells_Cheung.166025	0	.	12415819	12418111	0	1	2292	0
chr2	12425207	12426642	B_cells_Cheung.166031	0	.	12425207	12426642	0	1	1435	0
chr2	12430698	12433175	B_cells_Cheung.166034	0	.	12430698	12433175	0	1	2477	0
chr2	12431307	12432264	melanoma_Garraway_short_term_cultures.59377	0	.	12431307	12432264	0	1	957	0
chr2	12431468	12431805	B_Cells_Pritchard.2653863	0	.	12431468	12431805	0	1	337	0
chr2	12451692	12453254	melanoma_Garraway_short_term_cultures.59382	0	.	12451692	12453254	0	1	1562	0
chr2	12463050	12463779	melanoma_Garraway_short_term_cultures.59388	0	.	12463050	12463779	0	1	729	0
chr2	12466328	12468063	melanoma_Garraway_short_term_cultures.59390	0	.	12466328	12468063	0	1	1735	0
chr2	12466443	12468038	B_cells_Cheung.166051	0	.	12466443	12468038	0	1	1595	0
chr2	12470466	12472907	B_cells_Cheung.166053	0	.	12470466	12472907	0	1	2441	0
chr2	12480172	12481208	B_cells_Cheung.166056	0	.	12480172	12481208	0	1	1036	0
chr2	12480684	12481427	melanoma_Garraway_short_term_cultures.59396	0	.	12480684	12481427	0	1	743	0
chr2	12483231	12484511	B_cells_Cheung.166059	0	.	12483231	12484511	0	1	1280	0
chr2	12484946	12486438	melanoma_Garraway_short_term_cultures.59398	0	.	12484946	12486438	0	1	1492	0
chr2	12485090	12488706	B_cells_Cheung.166060	0	.	12485090	12488706	0	1	3616	0
chr2	12488960	12490777	B_cells_Cheung.166061	0	.	12488960	12490777	0	1	1817	0
chr2	12498190	12498567	CD4_Snyder.62121	0	.	12498190	12498567	0	1	377	0
chr2	12506370	12507160	CD4_Snyder.62137	0	.	12506370	12507160	0	1	790	0
chr2	12506421	12507192	B_cells_Cheung.166072	0	.	12506421	12507192	0	1	771	0
chr2	12507816	12508731	B_cells_Cheung.166074	0	.	12507816	12508731	0	1	915	0
chr2	12525103	12527614	B_cells_Cheung.166086	0	.	12525103	12527614	0	1	2511	0
chr2	12540723	12547870	B_cells_Cheung.166094	0	.	12540723	12547870	0	1	7147	0
chr2	12544930	12547172	B_Cells_Pritchard.2654277	0	.	12544930	12547172	0	1	2242	0
chr2	12545052	12546205	melanoma_Garraway_short_term_cultures.59415	0	.	12545052	12546205	0	1	1153	0
chr2	12545073	12545786	MeI_Garraway.15339	0	.	12545073	12545786	0	1	713	0
chr2	12550503	12552034	B_cells_Cheung.166096	0	.	12550503	12552034	0	1	1531	0
chr2	12550540	12551465	B_Cells_Pritchard.2654291	0	.	12550540	12551465	0	1	925	0
chr2	12555211	12558884	B_cells_Cheung.166099	0	.	12555211	12558884	0	1	3673	0
chr2	12560086	12560474	B_cells_Cheung.166100	0	.	12560086	12560474	0	1	388	0
chr2	12605176	12605523	B_Cells_Pritchard.2654455	0	.	12605176	12605523	0	1	347	0
chr2	12619287	12622702	B_cells_Cheung.164375	0	.	12619287	12622702	0	1	3415	0
chr2	12629403	12630543	K562.39372	0	.	12629403	12630543	0	1	1140	0
chr2	12629873	12630185	B_cells_Cheung.164380	0	.	12629873	12630185	0	1	312	0
chr2	12629892	12630212	MeI_Garraway.15343	0	.	12629892	12630212	0	1	320	0
chr2	12677942	12678960	REMC_LuminalBreast.84299	0	.	12677942	12678960	0	1	1018	0
chr2	12739080	12740437	prostate_carcinoma.84940	0	.	12739080	12740437	0	1	1357	0
chr2	12739106	12739507	prostate_normal.51472	0	.	12739106	12739507	0	1	401	0
chr2	12739671	12740581	prostate_normal.51470	0	.	12739671	12740581	0	1	910	0
chr2	12758407	12759988	melanoma_Garraway_short_term_cultures.59440	0	.	12758407	12759988	0	1	1581	0
chr2	12758634	12761211	H1_polyA+.99140	0	.	12758634	12761211	0	1	2577	0
chr2	12758863	12760204	MIP101.59273	0	.	12758863	12760204	0	1	1341	0
chr2	12759071	12760933	prostate_carcinoma.84942	0	.	12759071	12760933	0	1	1862	0
chr2	12759100	12759917	MeI_Garraway.15349	0	.	12759100	12759917	0	1	817	0
chr2	12761271	12774325	H1_polyA+.99141	0	-	12761271	12774325	0	2	671,534	0,12520
chr2	12765308	12767074	REMC_LuminalBreast.84306	0	.	12765308	12767074	0	1	1766	0
chr2	12939583	12984254	Rinn_00004149	0	-	12939583	12984254	0	3	247,102,78	0,33819,44593
chr2	12986078	12986987	melanoma_Garraway_short_term_cultures.59447	0	.	12986078	12986987	0	1	909	0
chr2	13005446	13006929	melanoma_Garraway_short_term_cultures.59450	0	.	13005446	13006929	0	1	1483	0
chr2	13058086	13058731	melanoma_Garraway_short_term_cultures.59462	0	.	13058086	13058731	0	1	645	0
chr2	13059161	13064518	prostate_carcinoma.84951	0	-	13059161	13064518	0	3	1023,434,72	0,1932,5285
chr2	13059161	13060977	prostate_carcinoma.84950	0	.	13059161	13060977	0	1	1816	0
chr2	13480735	13481887	HepG2_Caltech_ENCODE.32425	0	.	13480735	13481887	0	1	1152	0
chr2	13482302	13498781	HepG2_Caltech_ENCODE.32426	0	+	13482302	13498781	0	2	3706,48	0,16431
chr2	13538576	13539787	HepG2_Caltech_ENCODE.32435	0	.	13538576	13539787	0	1	1211	0
chr2	13562313	13583831	HepG2_Caltech_ENCODE.32439	0	-	13562313	13583831	0	2	8,9740	0,11778
chr2	13563602	13583831	HepG2_Caltech_ENCODE.32440	0	+	13563602	13583831	0	2	142,9722	0,10507
chr2	13568213	13568718	B_Cells_Pritchard.2656059	0	.	13568213	13568718	0	1	505	0
chr2	13568302	13568722	B_cells_Cheung.164391	0	.	13568302	13568722	0	1	420	0
chr2	13576829	13578345	B_cells_Cheung.164396	0	.	13576829	13578345	0	1	1516	0
chr2	13577053	13578258	B_Cells_Pritchard.2656095	0	.	13577053	13578258	0	1	1205	0
chr2	13584180	13584511	HepG2_Caltech_ENCODE.32444	0	.	13584180	13584511	0	1	331	0
chr2	13599743	13600062	prostate_carcinoma.84956	0	.	13599743	13600062	0	1	319	0
chr2	13606286	13609855	prostate_carcinoma.84957	0	.	13606286	13609855	0	1	3569	0
chr2	13611058	13611797	B_cells_Cheung.164418	0	.	13611058	13611797	0	1	739	0
chr2	13625646	13627421	B_cells_Cheung.164429	0	.	13625646	13627421	0	1	1775	0
chr2	13673605	13675856	B_cells_Cheung.164441	0	.	13673605	13675856	0	1	2251	0
chr2	13705293	13706566	B_cells_Cheung.164459	0	.	13705293	13706566	0	1	1273	0
chr2	13705838	13706235	B_Cells_Pritchard.2656529	0	.	13705838	13706235	0	1	397	0
chr2	13706618	13709756	B_cells_Cheung.164460	0	.	13706618	13709756	0	1	3138	0
chr2	13714813	13716722	B_cells_Cheung.164466	0	.	13714813	13716722	0	1	1909	0
chr2	13716950	13718321	B_cells_Cheung.164467	0	.	13716950	13718321	0	1	1371	0
chr2	13732700	13734230	B_Cells_Pritchard.2656649	0	.	13732700	13734230	0	1	1530	0
chr2	13733617	13734776	B_cells_Cheung.164480	0	.	13733617	13734776	0	1	1159	0
chr2	13766934	13767573	prostate_carcinoma.84984	0	.	13766934	13767573	0	1	639	0
chr2	13802417	13804570	B_cells_Cheung.164514	0	.	13802417	13804570	0	1	2153	0
chr2	13804036	13804540	prostate_carcinoma.84997	0	.	13804036	13804540	0	1	504	0
chr2	13804037	13804563	B_Cells_Pritchard.2656857	0	.	13804037	13804563	0	1	526	0
chr2	13805884	13806312	B_cells_Cheung.164516	0	.	13805884	13806312	0	1	428	0
chr2	13819002	13819992	B_cells_Cheung.164525	0	.	13819002	13819992	0	1	990	0
chr2	13834676	13835542	prostate_carcinoma.85006	0	.	13834676	13835542	0	1	866	0
chr2	13844358	13844977	prostate_carcinoma.85012	0	.	13844358	13844977	0	1	619	0
chr2	13977253	13978275	prostate_carcinoma.85036	0	.	13977253	13978275	0	1	1022	0
chr2	14182611	14184082	prostate_carcinoma.85059	0	.	14182611	14184082	0	1	1471	0
chr2	14726594	14731241	prostate_carcinoma.85072	0	.	14726594	14731241	0	1	4647	0
chr2	14728224	14730569	REMC_LuminalBreast.84324	0	.	14728224	14730569	0	1	2345	0
chr2	14728534	14730483	MIP101.59281	0	.	14728534	14730483	0	1	1949	0
chr2	14729381	14730530	prostate_normal.51533	0	.	14729381	14730530	0	1	1149	0
chr2	14803737	14804050	A549_Myers.74874	0	.	14803737	14804050	0	1	313	0
chr2	14930038	14930649	B_Cells_Pritchard.2658913	0	.	14930038	14930649	0	1	611	0
chr2	14961763	14962093	B_cells_Cheung.164548	0	.	14961763	14962093	0	1	330	0
chr2	15106599	15108641	B_cells_Cheung.164554	0	.	15106599	15108641	0	1	2042	0
chr2	15132631	15133285	prostate_carcinoma.85075	0	.	15132631	15133285	0	1	654	0
chr2	15148479	15149234	B_cells_Cheung.164562	0	.	15148479	15149234	0	1	755	0
chr2	15187894	15188272	B_cells_Cheung.164567	0	.	15187894	15188272	0	1	378	0
chr2	15189326	15189629	B_cells_Cheung.164568	0	.	15189326	15189629	0	1	303	0
chr2	15645895	15647371	B_Cells_Pritchard.2664597	0	+	15645895	15647371	0	1	1476	0
chr2	15645917	15647435	H1_polyA+.99271	0	.	15645917	15647435	0	1	1518	0
chr2	15645979	15647365	prostate_carcinoma.85085	0	.	15645979	15647365	0	1	1386	0
chr2	15698799	15700990	melanoma_Garraway_short_term_cultures.59482	0	.	15698799	15700990	0	1	2191	0
chr2	15699590	15700940	REMC_MyoepithelialBreast.78110	0	.	15699590	15700940	0	1	1350	0
chr2	15732709	15733087	A549_Myers.74899	0	.	15732709	15733087	0	1	378	0
chr2	15820864	15821167	A549_Myers.74902	0	.	15820864	15821167	0	1	303	0
chr2	15828213	15828529	A549_Myers.74903	0	.	15828213	15828529	0	1	316	0
chr2	16041747	16042341	A549_Myers.74909	0	.	16041747	16042341	0	1	594	0
chr2	16141859	16143072	HepG2_Caltech_ENCODE.32456	0	.	16141859	16143072	0	1	1213	0
chr2	16148856	16149268	A549_Myers.74912	0	.	16148856	16149268	0	1	412	0
chr2	16151391	16151790	A549_Myers.74913	0	.	16151391	16151790	0	1	399	0
chr2	16247177	16248975	Rinn_00002833	0	+	16247177	16248975	0	3	27,86,527	0,83,1271
chr2	16271774	16272943	Rinn_00003215	0	-	16271774	16272943	0	2	280,137	0,1032
chr2	16361071	16364315	Rinn_00003216	0	-	16361071	16364315	0	2	570,172	0,3072
chr2	16552886	16553247	A549_Myers.74917	0	.	16552886	16553247	0	1	361	0
chr2	16586438	16590444	HIT000046611	0	-	16586438	16590444	0	1	4006	0
chr2	17022760	17024183	B_cells_Cheung.164767	0	.	17022760	17024183	0	1	1423	0
chr2	17022943	17023732	prostate_carcinoma.85112	0	.	17022943	17023732	0	1	789	0
chr2	17149646	17151399	HIT000328513	0	+	17149646	17151399	0	1	1753	0
chr2	17702786	17704070	HepG2_Caltech_ENCODE.32474	0	.	17702786	17704070	0	1	1284	0
chr2	17702816	17703614	brain_AmbionMAQC.39443	0	.	17702816	17703614	0	1	798	0
chr2	17703738	17705366	H1_polyA+.99321	0	.	17703738	17705366	0	1	1628	0
chr2	17704430	17705086	B_Cells_Pritchard.2665301	0	.	17704430	17705086	0	1	656	0
chr2	17704708	17705600	B_cells_Cheung.164783	0	.	17704708	17705600	0	1	892	0
chr2	17706405	17707011	B_Cells_Pritchard.2665307	0	.	17706405	17707011	0	1	606	0
chr2	17920114	17921698	prostate_carcinoma.85139	0	.	17920114	17921698	0	1	1584	0
chr2	17920166	17921505	prostate_normal.51568	0	.	17920166	17921505	0	1	1339	0
chr2	17920258	17921510	BT20_Thompson.19468	0	.	17920258	17921510	0	1	1252	0
chr2	17920379	17922168	MIP101.59367	0	.	17920379	17922168	0	1	1789	0
chr2	17921435	17921796	H1_rRNA-depleted_UCSD_REMC.74792	0	.	17921435	17921796	0	1	361	0
chr2	18524866	18564059	pHIT000099355	0	-	18524866	18564059	0	5	271,112,106,123,129	0,1888,7410,34063,39064
chr2	18524866	18587007	pHIT000003824	0	-	18524866	18587007	0	6	271,112,106,60,123,6	0,1888,7410,25419,34063,62135
chr2	18525122	18587007	pHIT000074170	0	-	18525122	18587007	0	6	15,107,106,60,123,6	0,1637,7154,25163,33807,61879
chr2	18592173	18594761	REMC_LuminalBreast.84407	0	.	18592173	18594761	0	1	2588	0
chr2	18592988	18595661	REMC_BreastStem.42962	0	.	18592988	18595661	0	1	2673	0
chr2	18593131	18594756	HepG2_Caltech_ENCODE.32484	0	.	18593131	18594756	0	1	1625	0
chr2	18593147	18593987	CD4_Plagnol_resting.55644	0	.	18593147	18593987	0	1	840	0
chr2	18593155	18593705	B_Cells_Pritchard.2667017	0	.	18593155	18593705	0	1	550	0
chr2	18593808	18595546	B_Cells_Pritchard.2667019	0	.	18593808	18595546	0	1	1738	0
chr2	18594812	18598401	HepG2_Caltech_ENCODE.32485	0	.	18594812	18598401	0	1	3589	0
chr2	18594816	18595444	B_cells_Cheung.164834	0	.	18594816	18595444	0	1	628	0
chr2	18643600	18644819	MIP101.59386	0	.	18643600	18644819	0	1	1219	0
chr2	18650856	18652657	B_Cells_Pritchard.2667127	0	.	18650856	18652657	0	1	1801	0
chr2	18651942	18652760	prostate_carcinoma.85169	0	.	18651942	18652760	0	1	818	0
chr2	18772380	18775389	REMC_LuminalBreast.84428	0	.	18772380	18775389	0	1	3009	0
chr2	18772724	18775528	B_cells_Cheung.164877	0	.	18772724	18775528	0	1	2804	0
chr2	18774159	18775657	liver_polyA+.113007	0	-	18774159	18775657	0	2	271,991	0,507
chr2	18774355	18775383	kidney_Gilad.72945	0	-	18774355	18775383	0	2	75,717	0,311
chr2	18774552	18774983	CD4_Plagnol_resting.55651	0	.	18774552	18774983	0	1	431	0
chr2	18776456	18778496	REMC_MyoepithelialBreast.78213	0	.	18776456	18778496	0	1	2040	0
chr2	18777735	18778708	REMC_LuminalBreast.84430	0	.	18777735	18778708	0	1	973	0
chr2	18781473	18783365	REMC_LuminalBreast.84431	0	.	18781473	18783365	0	1	1892	0
chr2	18785476	18786682	REMC_LuminalBreast.84433	0	.	18785476	18786682	0	1	1206	0
chr2	18787007	18789216	REMC_LuminalBreast.84434	0	.	18787007	18789216	0	1	2209	0
chr2	18787470	18788174	B_Cells_Pritchard.2667603	0	.	18787470	18788174	0	1	704	0
chr2	18787595	18788313	prostate_carcinoma.85170	0	.	18787595	18788313	0	1	718	0
chr2	18787623	18788422	B_cells_Cheung.164880	0	.	18787623	18788422	0	1	799	0
chr2	18818872	18819210	B_cells_Cheung.164884	0	.	18818872	18819210	0	1	338	0
chr2	18834815	18839108	pHIT000099356	0	-	18834815	18839108	0	4	184,199,117,184	0,1864,2263,4109
chr2	18844911	18868461	pHIT000099357	0	-	18844911	18868461	0	3	155,231,130	0,11843,23420
chr2	18868215	18868559	A549_Myers.74966	0	.	18868215	18868559	0	1	344	0
chr2	18900317	18901229	REMC_MyoepithelialBreast.78223	0	.	18900317	18901229	0	1	912	0
chr2	18904194	18905479	REMC_MyoepithelialBreast.78224	0	.	18904194	18905479	0	1	1285	0
chr2	18905880	18907437	REMC_LuminalBreast.84449	0	.	18905880	18907437	0	1	1557	0
chr2	18918828	18919287	B_cells_Cheung.164891	0	.	18918828	18919287	0	1	459	0
chr2	18918959	18920127	REMC_MyoepithelialBreast.78229	0	.	18918959	18920127	0	1	1168	0
chr2	18925291	18926031	REMC_LuminalBreast.84456	0	.	18925291	18926031	0	1	740	0
chr2	18930472	18931397	REMC_MyoepithelialBreast.78233	0	.	18930472	18931397	0	1	925	0
chr2	18930673	18931564	REMC_LuminalBreast.84457	0	.	18930673	18931564	0	1	891	0
chr2	18940513	18942017	REMC_MyoepithelialBreast.78236	0	.	18940513	18942017	0	1	1504	0
chr2	18994095	18994402	liver_polyA+.113029	0	.	18994095	18994402	0	1	307	0
chr2	18998497	18999306	REMC_MyoepithelialBreast.78153	0	.	18998497	18999306	0	1	809	0
chr2	18998649	19001974	HIT000048092	0	+	18998649	19001974	0	1	3325	0
chr2	19004960	19006983	REMC_MyoepithelialBreast.78156	0	.	19004960	19006983	0	1	2023	0
chr2	19005114	19006999	REMC_LuminalBreast.84460	0	.	19005114	19006999	0	1	1885	0
chr2	19045325	19046005	B_Cells_Pritchard.2668479	0	.	19045325	19046005	0	1	680	0
chr2	19089875	19127183	H1_polyA+.99387	0	-	19089875	19127183	0	2	66,859	0,36449
chr2	19095484	19097734	MIP101.59394	0	.	19095484	19097734	0	1	2250	0
chr2	19096113	19097051	prostate_carcinoma.85180	0	.	19096113	19097051	0	1	938	0
chr2	19096887	19099051	REMC_LuminalBreast.84469	0	.	19096887	19099051	0	1	2164	0
chr2	19098451	19100490	MIP101.59395	0	.	19098451	19100490	0	1	2039	0
chr2	19125519	19127116	REMC_MyoepithelialBreast.78178	0	.	19125519	19127116	0	1	1597	0
chr2	19126562	19127561	prostate_carcinoma.85181	0	.	19126562	19127561	0	1	999	0
chr2	19126766	19127507	B_Cells_Pritchard.2668741	0	.	19126766	19127507	0	1	741	0
chr2	19126776	19127214	liver_polyA+.113042	0	.	19126776	19127214	0	1	438	0
chr2	19131518	19133287	REMC_LuminalBreast.84478	0	.	19131518	19133287	0	1	1769	0
chr2	19132028	19132973	REMC_MyoepithelialBreast.78180	0	.	19132028	19132973	0	1	945	0
chr2	19135446	19136322	H1_polyA+.99386	0	.	19135446	19136322	0	1	876	0
chr2	19141061	19142933	REMC_LuminalBreast.84482	0	.	19141061	19142933	0	1	1872	0
chr2	19143453	19145409	REMC_MyoepithelialBreast.78185	0	.	19143453	19145409	0	1	1956	0
chr2	19153270	19154096	REMC_LuminalBreast.84483	0	.	19153270	19154096	0	1	826	0
chr2	19153453	19154044	REMC_MyoepithelialBreast.78189	0	.	19153453	19154044	0	1	591	0
chr2	19154261	19155573	REMC_LuminalBreast.84484	0	.	19154261	19155573	0	1	1312	0
chr2	19155628	19156604	REMC_LuminalBreast.84485	0	.	19155628	19156604	0	1	976	0
chr2	19155728	19156611	REMC_MyoepithelialBreast.78191	0	.	19155728	19156611	0	1	883	0
chr2	19242655	19243985	B_Cells_Pritchard.2669111	0	.	19242655	19243985	0	1	1330	0
chr2	19242664	19243717	B_cells_Cheung.164921	0	.	19242664	19243717	0	1	1053	0
chr2	19244172	19244879	B_cells_Cheung.164923	0	.	19244172	19244879	0	1	707	0
chr2	19266000	19266752	B_Cells_Pritchard.2669199	0	.	19266000	19266752	0	1	752	0
chr2	19266882	19267424	B_Cells_Pritchard.2669201	0	.	19266882	19267424	0	1	542	0
chr2	19267626	19268088	prostate_carcinoma.85187	0	.	19267626	19268088	0	1	462	0
chr2	19300674	19301318	B_cells_Cheung.164938	0	.	19300674	19301318	0	1	644	0
chr2	19301589	19303311	B_Cells_Pritchard.2669345	0	.	19301589	19303311	0	1	1722	0
chr2	19303450	19304988	B_cells_Cheung.164941	0	.	19303450	19304988	0	1	1538	0
chr2	19303525	19304468	prostate_carcinoma.85189	0	.	19303525	19304468	0	1	943	0
chr2	19304076	19304936	B_Cells_Pritchard.2669343	0	.	19304076	19304936	0	1	860	0
chr2	19308211	19309179	B_Cells_Pritchard.2669365	0	.	19308211	19309179	0	1	968	0
chr2	19308373	19309194	B_cells_Cheung.164944	0	.	19308373	19309194	0	1	821	0
chr2	19311779	19313145	B_cells_Cheung.164948	0	.	19311779	19313145	0	1	1366	0
chr2	19327172	19327513	B_cells_Cheung.164957	0	.	19327172	19327513	0	1	341	0
chr2	19335379	19335991	B_cells_Cheung.164965	0	.	19335379	19335991	0	1	612	0
chr2	19338485	19338869	B_cells_Cheung.164968	0	.	19338485	19338869	0	1	384	0
chr2	19343455	19343757	B_Cells_Pritchard.2669501	0	.	19343455	19343757	0	1	302	0
chr2	19344423	19346866	B_Cells_Pritchard.2669519	0	.	19344423	19346866	0	1	2443	0
chr2	19384927	19385781	prostate_carcinoma.85195	0	.	19384927	19385781	0	1	854	0
chr2	19393755	19394393	B_Cells_Pritchard.2669697	0	.	19393755	19394393	0	1	638	0
chr2	19393799	19394586	B_cells_Cheung.164995	0	.	19393799	19394586	0	1	787	0
chr2	19407048	19411400	MIP101.59409	0	+	19407048	19411400	0	2	1416,1246	0,3106
chr2	19408734	19411243	REMC_LuminalBreast.84493	0	.	19408734	19411243	0	1	2509	0
chr2	19408734	19411271	HepG2_Caltech_ENCODE.32497	0	.	19408734	19411271	0	1	2537	0
chr2	19408737	19411259	K562.39384	0	.	19408737	19411259	0	1	2522	0
chr2	19408741	19411342	H1_polyA+.99392	0	.	19408741	19411342	0	1	2601	0
chr2	19408759	19411286	B_cells_Cheung.165011	0	.	19408759	19411286	0	1	2527	0
chr2	19408781	19411272	prostate_carcinoma.85202	0	.	19408781	19411272	0	1	2491	0
chr2	19408782	19411556	B_Cells_Pritchard.2669839	0	+	19408782	19411556	0	2	993,1643	0,1131
chr2	19408793	19411274	BT20_Thompson.19483	0	.	19408793	19411274	0	1	2481	0
chr2	19409707	19411273	MCF7_Burge_Thompson.28282	0	.	19409707	19411273	0	1	1566	0
chr2	19409796	19411400	MIP101.59410	0	.	19409796	19411400	0	1	1604	0
chr2	19410262	19411244	BT474_Burge_Thompson.31026	0	.	19410262	19411244	0	1	982	0
chr2	19410713	19411250	CD4_Snyder.62250	0	.	19410713	19411250	0	1	537	0
chr2	19410894	19411244	MB435_Burge.38155	0	.	19410894	19411244	0	1	350	0
chr2	19410905	19411278	T47D_Burge_Thompson.26145	0	.	19410905	19411278	0	1	373	0
chr2	19474813	19476160	REMC_MyoepithelialBreast.78243	0	.	19474813	19476160	0	1	1347	0
chr2	19478690	19479877	REMC_MyoepithelialBreast.78244	0	.	19478690	19479877	0	1	1187	0
chr2	19554811	19558904	REMC_MyoepithelialBreast.78259	0	.	19554811	19558904	0	1	4093	0
chr2	19570737	19572007	REMC_MyoepithelialBreast.78262	0	.	19570737	19572007	0	1	1270	0
chr2	19572312	19574536	REMC_MyoepithelialBreast.78263	0	.	19572312	19574536	0	1	2224	0
chr2	19574581	19576615	REMC_LuminalBreast.84499	0	.	19574581	19576615	0	1	2034	0
chr2	19575172	19577759	REMC_MyoepithelialBreast.78265	0	.	19575172	19577759	0	1	2587	0
chr2	19577330	19580471	REMC_LuminalBreast.84500	0	.	19577330	19580471	0	1	3141	0
chr2	19579626	19582529	REMC_MyoepithelialBreast.78267	0	.	19579626	19582529	0	1	2903	0
chr2	19581823	19583339	REMC_LuminalBreast.84501	0	.	19581823	19583339	0	1	1516	0
chr2	19584727	19585405	REMC_MyoepithelialBreast.78270	0	.	19584727	19585405	0	1	678	0
chr2	19628473	19629278	REMC_MyoepithelialBreast.78281	0	.	19628473	19629278	0	1	805	0
chr2	19634291	19635100	REMC_MyoepithelialBreast.78284	0	.	19634291	19635100	0	1	809	0
chr2	19636402	19637638	REMC_MyoepithelialBreast.78285	0	.	19636402	19637638	0	1	1236	0
chr2	19642408	19643123	REMC_MyoepithelialBreast.78289	0	.	19642408	19643123	0	1	715	0
chr2	19651978	19653749	REMC_LuminalBreast.84512	0	.	19651978	19653749	0	1	1771	0
chr2	19652215	19652682	B_Cells_Pritchard.2670273	0	.	19652215	19652682	0	1	467	0
chr2	19663262	19663976	REMC_LuminalBreast.84515	0	.	19663262	19663976	0	1	714	0
chr2	19672091	19673801	REMC_LuminalBreast.84516	0	.	19672091	19673801	0	1	1710	0
chr2	19688996	19689535	A549_Myers.74993	0	.	19688996	19689535	0	1	539	0
chr2	19809122	19809494	A549_Myers.75001	0	.	19809122	19809494	0	1	372	0
chr2	19809567	19809954	A549_Myers.75002	0	.	19809567	19809954	0	1	387	0
chr2	19861600	19861990	A549_Myers.75006	0	.	19861600	19861990	0	1	390	0
chr2	19865614	19866324	A549_Myers.75010	0	.	19865614	19866324	0	1	710	0
chr2	19879743	19880843	REMC_MyoepithelialBreast.78302	0	.	19879743	19880843	0	1	1100	0
chr2	19913685	19946890	pHIT000003828	0	+	19913685	19946890	0	12	98,107,92,87,69,118,90,65,233,267,121,91	0,6836,8731,14139,18440,19052,21813,21990,22688,30908,32171,33114
chr2	19926547	19927338	A549_Myers.75017	0	.	19926547	19927338	0	1	791	0
chr2	19930055	19954242	B_Cells_Pritchard.2671241	0	+	19930055	19954242	0	7	3733,204,233,6434,534,91,6890	0,5579,6318,9012,15510,16744,17297
chr2	19932037	19934364	prostate_carcinoma.85205	0	.	19932037	19934364	0	1	2327	0
chr2	19932095	19948289	NR_033875	0	+	19932095	19948289	0	10	99,118,145,204,233,141,965,121,91,898	0,642,1548,3539,4278,6949,10382,13761,14704,15296
chr2	19932101	19940635	ENST00000438692	0	+	19932101	19940635	0	5	93,118,204,233,1591	0,636,3533,4272,6943
chr2	19932101	19940635	HIT000005670	0	+	19932101	19940635	0	5	93,118,204,233,1591	0,636,3533,4272,6943
chr2	19932115	19948289	ENST00000449086	0	+	19932115	19948289	0	10	79,118,145,204,233,141,965,121,91,898	0,622,1528,3519,4258,6929,10362,13741,14684,15276
chr2	19932115	19948304	HIT000263128	0	+	19932115	19948304	0	10	79,118,145,204,233,141,965,121,91,913	0,622,1528,3519,4258,6929,10362,13741,14684,15276
chr2	19932131	19935772	Rinn_00002844	0	+	19932131	19935772	0	5	63,83,119,123,139	0,184,605,1534,3502
chr2	19932149	19951567	pHIT000099359	0	+	19932149	19951567	0	9	45,118,90,65,233,267,121,91,164	0,588,3349,3526,4224,12444,13707,14650,19254
chr2	19934679	19936219	REMC_MyoepithelialBreast.78314	0	.	19934679	19936219	0	1	1540	0
chr2	19934717	19935211	B_cells_Cheung.165019	0	.	19934717	19935211	0	1	494	0
chr2	19935924	19936907	REMC_LuminalBreast.84521	0	.	19935924	19936907	0	1	983	0
chr2	19936257	19936882	CD4_Snyder.62251	0	.	19936257	19936882	0	1	625	0
chr2	19936344	19936846	CD4_Plagnol_resting.55666	0	.	19936344	19936846	0	1	502	0
chr2	19937242	19954242	B_Cells_Pritchard.2671243	0	-	19937242	19954242	0	2	3146,13465	0,3535
chr2	19938933	19940332	REMC_LuminalBreast.84522	0	.	19938933	19940332	0	1	1399	0
chr2	19939040	19945421	CD4_Plagnol_resting.55669	0	.	19939040	19945421	0	1	6381	0
chr2	19939040	19940039	CD4_Plagnol_activated.57255	0	.	19939040	19940039	0	1	999	0
chr2	19939102	19939629	H9_polyA+.39669	0	.	19939102	19939629	0	1	527	0
chr2	19939126	19939491	CD4_Snyder.62252	0	.	19939126	19939491	0	1	365	0
chr2	19940765	19950937	B_cells_Cheung.165023	0	+	19940765	19950937	0	5	4095,181,121,91,3546	0,4182,5091,6034,6626
chr2	19940918	19943678	H1_polyA+.99396	0	.	19940918	19943678	0	1	2760	0
chr2	19940946	19942298	CD4_Plagnol_activated.57258	0	.	19940946	19942298	0	1	1352	0
chr2	19940964	19943709	prostate_normal.51590	0	.	19940964	19943709	0	1	2745	0
chr2	19943791	19945973	H1_polyA+.99398	0	+	19943791	19945973	0	2	1069,117	0,2065
chr2	19945830	19947066	CD4_Plagnol_resting.55661	0	.	19945830	19947066	0	1	1236	0
chr2	19946755	19950770	prostate_normal.51592	0	+	19946755	19950770	0	2	135,3379	0,636
chr2	19946862	19951141	H1_polyA+.99399	0	+	19946862	19951141	0	2	28,3750	0,529
chr2	19946894	19951141	H1_polyA+.99400	0	.	19946894	19951141	0	1	4247	0
chr2	19947252	19950776	CD4_Plagnol_resting.55662	0	.	19947252	19950776	0	1	3524	0
chr2	19947324	19950920	CD4_Plagnol_activated.57261	0	.	19947324	19950920	0	1	3596	0
chr2	19951042	19956209	B_cells_Cheung.165025	0	.	19951042	19956209	0	1	5167	0
chr2	19951143	19952093	CD4_Plagnol_resting.55660	0	.	19951143	19952093	0	1	950	0
chr2	20081440	20083449	REMC_LuminalBreast.84527	0	.	20081440	20083449	0	1	2009	0
chr2	20081613	20084847	REMC_MyoepithelialBreast.78325	0	.	20081613	20084847	0	1	3234	0
chr2	20083716	20084846	REMC_LuminalBreast.84528	0	.	20083716	20084846	0	1	1130	0
chr2	20129406	20129771	A549_Myers.75047	0	.	20129406	20129771	0	1	365	0
chr2	20134607	20134918	A549_Myers.75048	0	.	20134607	20134918	0	1	311	0
chr2	20154965	20158958	HeLa_polyA+_Chen.31609	0	.	20154965	20158958	0	1	3993	0
chr2	20155403	20155887	A549_Myers.75053	0	.	20155403	20155887	0	1	484	0
chr2	20156869	20157680	A549_Myers.75055	0	.	20156869	20157680	0	1	811	0
chr2	20193123	20193669	A549_Myers.75068	0	.	20193123	20193669	0	1	546	0
chr2	20205596	20206515	A549_Myers.75073	0	.	20205596	20206515	0	1	919	0
chr2	20209010	20209319	A549_Myers.75074	0	.	20209010	20209319	0	1	309	0
chr2	20227479	20227936	B_Cells_Pritchard.2671717	0	.	20227479	20227936	0	1	457	0
chr2	20228043	20228508	BT474_Burge_Thompson.31034	0	.	20228043	20228508	0	1	465	0
chr2	20228157	20228740	B_Cells_Pritchard.2671721	0	.	20228157	20228740	0	1	583	0
chr2	20228879	20229617	B_Cells_Pritchard.2671719	0	.	20228879	20229617	0	1	738	0
chr2	20230352	20231591	B_Cells_Pritchard.2671725	0	.	20230352	20231591	0	1	1239	0
chr2	20230581	20231178	A549_Myers.75078	0	.	20230581	20231178	0	1	597	0
chr2	20233754	20234518	B_Cells_Pritchard.2671731	0	.	20233754	20234518	0	1	764	0
chr2	20245641	20248987	MDAMB231_Thompson.19421	0	.	20245641	20248987	0	1	3346	0
chr2	20245641	20246602	HepG2_Caltech_ENCODE.32520	0	.	20245641	20246602	0	1	961	0
chr2	20245854	20247094	melanoma_Garraway_short_term_cultures.59541	0	.	20245854	20247094	0	1	1240	0
chr2	20247174	20248658	HepG2_Caltech_ENCODE.32521	0	.	20247174	20248658	0	1	1484	0
chr2	20247325	20248447	B_Cells_Pritchard.2671759	0	.	20247325	20248447	0	1	1122	0
chr2	20247530	20248833	melanoma_Garraway_short_term_cultures.59542	0	.	20247530	20248833	0	1	1303	0
chr2	20289728	20290035	XR_078927	0	+	20289728	20290035	0	1	307	0
chr2	20291882	20293082	REMC_LuminalBreast.84536	0	.	20291882	20293082	0	1	1200	0
chr2	20298596	20299728	REMC_LuminalBreast.84538	0	.	20298596	20299728	0	1	1132	0
chr2	20299209	20299712	REMC_BreastStem.42999	0	.	20299209	20299712	0	1	503	0
chr2	20300171	20301379	melanoma_Garraway_short_term_cultures.59545	0	.	20300171	20301379	0	1	1208	0
chr2	20300295	20301086	REMC_BreastStem.43000	0	.	20300295	20301086	0	1	791	0
chr2	20304594	20305744	REMC_BreastStem.43002	0	.	20304594	20305744	0	1	1150	0
chr2	20304786	20305741	B_cells_Cheung.165267	0	.	20304786	20305741	0	1	955	0
chr2	20304811	20305747	melanoma_Garraway_short_term_cultures.59547	0	.	20304811	20305747	0	1	936	0
chr2	20305196	20305799	A549_Myers.75112	0	.	20305196	20305799	0	1	603	0
chr2	20305834	20308283	REMC_MyoepithelialBreast.78351	0	.	20305834	20308283	0	1	2449	0
chr2	20305874	20308137	REMC_BreastStem.43003	0	.	20305874	20308137	0	1	2263	0
chr2	20305915	20306739	B_cells_Cheung.165268	0	.	20305915	20306739	0	1	824	0
chr2	20420957	20421318	B_cells_Cheung.165068	0	.	20420957	20421318	0	1	361	0
chr2	20484636	20487878	B_Cells_Pritchard.2672019	0	.	20484636	20487878	0	1	3242	0
chr2	20485049	20485525	B_cells_Cheung.165076	0	.	20485049	20485525	0	1	476	0
chr2	20487504	20488445	BT474_Burge_Thompson.31037	0	.	20487504	20488445	0	1	941	0
chr2	20488018	20488486	B_Cells_Pritchard.2672021	0	.	20488018	20488486	0	1	468	0
chr2	20519270	20522285	REMC_MyoepithelialBreast.78364	0	.	20519270	20522285	0	1	3015	0
chr2	20520996	20522525	REMC_LuminalBreast.84551	0	.	20520996	20522525	0	1	1529	0
chr2	20522417	20523438	REMC_MyoepithelialBreast.78365	0	.	20522417	20523438	0	1	1021	0
chr2	20522692	20523431	REMC_LuminalBreast.84552	0	.	20522692	20523431	0	1	739	0
chr2	20522787	20524858	REMC_BreastStem.43068	0	.	20522787	20524858	0	1	2071	0
chr2	20525040	20527578	REMC_BreastStem.43069	0	.	20525040	20527578	0	1	2538	0
chr2	20525046	20525933	REMC_MyoepithelialBreast.78368	0	.	20525046	20525933	0	1	887	0
chr2	20527741	20531601	REMC_BreastStem.43070	0	-	20527741	20531601	0	2	2415,1138	0,2722
chr2	20527977	20532665	REMC_MyoepithelialBreast.78370	0	-	20527977	20532665	0	2	2179,2202	0,2486
chr2	20528945	20530154	REMC_LuminalBreast.84559	0	.	20528945	20530154	0	1	1209	0
chr2	20531059	20531782	REMC_LuminalBreast.84560	0	.	20531059	20531782	0	1	723	0
chr2	20532227	20534792	REMC_BreastStem.43072	0	.	20532227	20534792	0	1	2565	0
chr2	20535733	20536919	REMC_BreastStem.43073	0	.	20535733	20536919	0	1	1186	0
chr2	20535762	20537178	REMC_MyoepithelialBreast.78372	0	.	20535762	20537178	0	1	1416	0
chr2	20541888	20543493	B_cells_Cheung.165081	0	-	20541888	20543493	0	2	309,238	0,1367
chr2	20554082	20554515	A549_Myers.75143	0	.	20554082	20554515	0	1	433	0
chr2	20575383	20576019	B_Cells_Pritchard.2672263	0	.	20575383	20576019	0	1	636	0
chr2	20586557	20587284	HeLa_polyA+_Chen.31623	0	.	20586557	20587284	0	1	727	0
chr2	20591846	20592418	liver_polyA+.113149	0	.	20591846	20592418	0	1	572	0
chr2	20594479	20599216	HeLa_polyA+_Chen.31627	0	.	20594479	20599216	0	1	4737	0
chr2	20594940	20596599	HeLa_polyA-_Chen.16682	0	.	20594940	20596599	0	1	1659	0
chr2	20595238	20604579	pHIT000003840	0	-	20595238	20604579	0	4	25,148,98,152	0,2109,6616,9189
chr2	20596941	20597730	liver_polyA+.113155	0	.	20596941	20597730	0	1	789	0
chr2	20596951	20597417	A549_Myers.75152	0	.	20596951	20597417	0	1	466	0
chr2	20597426	20603342	Rinn_00005102	0	-	20597426	20603342	0	3	69,336,215	0,4984,5701
chr2	20598158	20598468	A549_Myers.75153	0	.	20598158	20598468	0	1	310	0
chr2	20600828	20603342	Rinn_00005104	0	-	20600828	20603342	0	3	778,336,215	0,1582,2299
chr2	20603555	20603915	A549_Myers.75158	0	.	20603555	20603915	0	1	360	0
chr2	20605606	20605945	A549_Myers.75160	0	.	20605606	20605945	0	1	339	0
chr2	20612342	20612675	A549_Myers.75161	0	.	20612342	20612675	0	1	333	0
chr2	20619857	20621629	prostate_carcinoma.85265	0	.	20619857	20621629	0	1	1772	0
chr2	20619906	20620598	B_cells_Cheung.165085	0	.	20619906	20620598	0	1	692	0
chr2	20621082	20621810	B_cells_Cheung.165086	0	.	20621082	20621810	0	1	728	0
chr2	20621757	20622633	prostate_carcinoma.85266	0	.	20621757	20622633	0	1	876	0
chr2	20621967	20622895	brain_AmbionMAQC.39482	0	.	20621967	20622895	0	1	928	0
chr2	20724312	20726309	prostate_carcinoma.85281	0	.	20724312	20726309	0	1	1997	0
chr2	20724819	20725234	A549_Myers.75209	0	.	20724819	20725234	0	1	415	0
chr2	20726634	20727003	prostate_normal.51652	0	.	20726634	20727003	0	1	369	0
chr2	20735390	20745720	prostate_carcinoma.85282	0	-	20735390	20745720	0	2	5836,3932	0,6398
chr2	20737597	20739492	brain_AmbionMAQC.39485	0	.	20737597	20739492	0	1	1895	0
chr2	20738043	20739124	CD4_Plagnol_resting.55698	0	.	20738043	20739124	0	1	1081	0
chr2	20738493	20738806	lymph_node_Burge.44540	0	.	20738493	20738806	0	1	313	0
chr2	20738540	20739030	B_cells_Cheung.165121	0	.	20738540	20739030	0	1	490	0
chr2	20740517	20740923	H9_polyA+.39689	0	.	20740517	20740923	0	1	406	0
chr2	20740539	20742225	CD4_Plagnol_activated.57289	0	.	20740539	20742225	0	1	1686	0
chr2	20741049	20742478	HIT000222641	0	-	20741049	20742478	0	1	1429	0
chr2	20741335	20742512	melanoma_Garraway_short_term_cultures.59581	0	.	20741335	20742512	0	1	1177	0
chr2	20741506	20742421	brain_AmbionMAQC.39487	0	.	20741506	20742421	0	1	915	0
chr2	20741507	20742456	kidney_Gilad.73042	0	.	20741507	20742456	0	1	949	0
chr2	20741512	20742643	CD4_Plagnol_resting.55701	0	.	20741512	20742643	0	1	1131	0
chr2	20741524	20744159	REMC_LuminalBreast.84570	0	.	20741524	20744159	0	1	2635	0
chr2	20741543	20742456	liver_polyA+.113189	0	.	20741543	20742456	0	1	913	0
chr2	20741800	20742474	MeI_Garraway.15377	0	.	20741800	20742474	0	1	674	0
chr2	20741968	20743010	REMC_MyoepithelialBreast.78383	0	.	20741968	20743010	0	1	1042	0
chr2	20742438	20744586	K562.39442	0	.	20742438	20744586	0	1	2148	0
chr2	20743980	20744888	melanoma_Garraway_short_term_cultures.59583	0	.	20743980	20744888	0	1	908	0
chr2	20744422	20745543	REMC_LuminalBreast.84571	0	.	20744422	20745543	0	1	1121	0
chr2	20744645	20745659	prostate_normal.51656	0	.	20744645	20745659	0	1	1014	0
chr2	20744769	20747017	REMC_MyoepithelialBreast.78384	0	.	20744769	20747017	0	1	2248	0
chr2	20745260	20746050	CD4_Snyder.62305	0	.	20745260	20746050	0	1	790	0
chr2	20943442	20943842	A549_Myers.75233	0	.	20943442	20943842	0	1	400	0
chr2	21075713	21077294	HIT000270375	0	+	21075713	21077294	0	1	1581	0
chr2	21120604	21122386	Rinn_00003598	0	+	21120604	21122386	0	2	390,1093	0,689
chr2	21120604	21122386	Rinn_00003597	0	+	21120604	21122386	0	3	39,231,1093	0,159,689
chr2	21120611	21122045	HepG2_Caltech_ENCODE.33970	0	+	21120611	21122045	0	3	32,305,751	0,78,683
chr2	21139110	21139451	liver_polyA+.113237	0	.	21139110	21139451	0	1	341	0
chr2	21152157	21152516	liver_polyA+.113242	0	.	21152157	21152516	0	1	359	0
chr2	21192667	21193991	B_cells_Cheung.165136	0	.	21192667	21193991	0	1	1324	0
chr2	21219720	21220033	B_cells_Cheung.165148	0	.	21219720	21220033	0	1	313	0
chr2	21257897	21258224	B_cells_Cheung.165153	0	.	21257897	21258224	0	1	327	0
chr2	21326864	21327435	B_cells_Cheung.165171	0	.	21326864	21327435	0	1	571	0
chr2	21338002	21338666	B_cells_Cheung.165172	0	.	21338002	21338666	0	1	664	0
chr2	21339469	21340459	B_cells_Cheung.165173	0	.	21339469	21340459	0	1	990	0
chr2	21341197	21341841	B_cells_Cheung.165174	0	.	21341197	21341841	0	1	644	0
chr2	21350727	21351112	B_cells_Cheung.165179	0	.	21350727	21351112	0	1	385	0
chr2	21365212	21365538	liver_polyA+.113275	0	.	21365212	21365538	0	1	326	0
chr2	21369182	21369612	B_cells_Cheung.165191	0	.	21369182	21369612	0	1	430	0
chr2	21395424	21395956	B_cells_Cheung.165196	0	.	21395424	21395956	0	1	532	0
chr2	21447563	21448288	B_cells_Cheung.165211	0	.	21447563	21448288	0	1	725	0
chr2	21457647	21458238	B_cells_Cheung.165212	0	.	21457647	21458238	0	1	591	0
chr2	21458334	21459796	B_cells_Cheung.165213	0	.	21458334	21459796	0	1	1462	0
chr2	21464200	21466090	B_cells_Cheung.165215	0	.	21464200	21466090	0	1	1890	0
chr2	21464887	21465269	A549_Myers.75240	0	.	21464887	21465269	0	1	382	0
chr2	21482280	21482723	B_cells_Cheung.165220	0	.	21482280	21482723	0	1	443	0
chr2	21508180	21508878	B_cells_Cheung.165222	0	.	21508180	21508878	0	1	698	0
chr2	21717593	21718697	B_cells_Cheung.165257	0	.	21717593	21718697	0	1	1104	0
chr2	23088560	23105277	liver_polyA+.113279	0	+	23088560	23105277	0	2	60,1934	0,14783
chr2	23095160	23104379	liver_polyA+.113278	0	-	23095160	23104379	0	3	263,129,136	0,7037,9083
chr2	23095371	23167378	Rinn_00004179	0	-	23095371	23167378	0	5	52,110,130,72,257	0,1288,6825,8871,71750
chr2	23100949	23101281	liver_polyA+.113287	0	.	23100949	23101281	0	1	332	0
chr2	23103289	23105277	liver_polyA+.113281	0	.	23103289	23105277	0	1	1988	0
chr2	23103915	23104321	kidney_Gilad.73109	0	.	23103915	23104321	0	1	406	0
chr2	23106978	23275432	Rinn_00003232	0	-	23106978	23275432	0	4	59,99,103,249	0,47216,60143,168205
chr2	23192449	23193636	liver_polyA+.113318	0	.	23192449	23193636	0	1	1187	0
chr2	23202146	23203092	HIT000007898	0	-	23202146	23203092	0	1	946	0
chr2	23203921	23204981	liver_polyA+.113326	0	.	23203921	23204981	0	1	1060	0
chr2	23318400	23318818	A549_Myers.75243	0	.	23318400	23318818	0	1	418	0
chr2	23407038	23408420	Rinn_00003233	0	-	23407038	23408420	0	4	208,80,182,59	0,294,1050,1323
chr2	23424028	23428240	Rinn_00002854	0	+	23424028	23428240	0	2	121,773	0,3439
chr2	23424029	23428240	ENST00000415245	0	+	23424029	23428240	0	2	120,772	0,3439
chr2	23427978	23428548	A549_Myers.75248	0	.	23427978	23428548	0	1	570	0
chr2	23451425	23451880	B_Cells_Pritchard.2678647	0	.	23451425	23451880	0	1	455	0
chr2	23791973	23797300	REMC_LuminalBreast.84608	0	.	23791973	23797300	0	1	5327	0
chr2	23794381	23798668	B_cells_Cheung.165344	0	.	23794381	23798668	0	1	4287	0
chr2	23796941	23799664	H1_polyA+.99495	0	.	23796941	23799664	0	1	2723	0
chr2	23796946	23798562	B_Cells_Pritchard.2679543	0	+	23796946	23798562	0	1	1616	0
chr2	23796978	23797975	prostate_carcinoma.85337	0	.	23796978	23797975	0	1	997	0
chr2	23799205	23799843	B_cells_Cheung.165346	0	.	23799205	23799843	0	1	638	0
chr2	23799522	23800651	B_Cells_Pritchard.2679559	0	+	23799522	23800651	0	1	1129	0
chr2	23801437	23806762	H1_polyA+.99497	0	.	23801437	23806762	0	1	5325	0
chr2	23801449	23806816	REMC_LuminalBreast.84611	0	.	23801449	23806816	0	1	5367	0
chr2	23801464	23806824	REMC_MyoepithelialBreast.78490	0	.	23801464	23806824	0	1	5360	0
chr2	23806230	23806567	B_cells_Cheung.165357	0	.	23806230	23806567	0	1	337	0
chr2	23806971	23813123	REMC_LuminalBreast.84598	0	.	23806971	23813123	0	1	6152	0
chr2	23808900	23811389	B_cells_Cheung.165362	0	.	23808900	23811389	0	1	2489	0
chr2	23819814	23823604	REMC_MyoepithelialBreast.78493	0	.	23819814	23823604	0	1	3790	0
chr2	23821557	23822079	REMC_BreastStem.43108	0	.	23821557	23822079	0	1	522	0
chr2	24078452	24078781	IMR90_UCSD_REMC.42927	0	-	24078452	24078781	0	1	329	0
chr2	24852332	24852660	B_cells_Cheung.165678	0	.	24852332	24852660	0	1	328	0
chr2	24996710	24997704	MIP101.59635	0	.	24996710	24997704	0	1	994	0
chr2	24999240	24999822	B_Cells_Pritchard.2682161	0	.	24999240	24999822	0	1	582	0
chr2	24999412	24999778	A549_Myers.75435	0	.	24999412	24999778	0	1	366	0
chr2	25000425	25000990	B_Cells_Pritchard.2682165	0	.	25000425	25000990	0	1	565	0
chr2	25002949	25003951	B_Cells_Pritchard.2682175	0	.	25002949	25003951	0	1	1002	0
chr2	25003200	25003898	B_cells_Cheung.165808	0	.	25003200	25003898	0	1	698	0
chr2	25048476	25049194	HIT000050131	0	+	25048476	25049194	0	1	718	0
chr2	25048537	25049195	ENST00000422449	0	+	25048537	25049195	0	2	166,197	0,461
chr2	25050265	25050965	B_cells_Cheung.165817	0	.	25050265	25050965	0	1	700	0
chr2	25062481	25079977	prostate_carcinoma.85538	0	-	25062481	25079977	0	2	272,669	0,16827
chr2	25062960	25063306	B_Cells_Pritchard.2682561	0	.	25062960	25063306	0	1	346	0
chr2	25069440	25070014	B_Cells_Pritchard.2682585	0	.	25069440	25070014	0	1	574	0
chr2	25077103	25077523	B_Cells_Pritchard.2682609	0	.	25077103	25077523	0	1	420	0
chr2	25116423	25117337	prostate_carcinoma.85546	0	.	25116423	25117337	0	1	914	0
chr2	25116554	25117065	brain_AmbionMAQC.39546	0	.	25116554	25117065	0	1	511	0
chr2	25116737	25117087	B_Cells_Pritchard.2682755	0	.	25116737	25117087	0	1	350	0
chr2	25280684	25285575	Rinn_00002860	0	+	25280684	25285575	0	2	238,230	0,4661
chr2	25280685	25285575	ENST00000431650	0	+	25280685	25285575	0	2	237,229	0,4661
chr2	25292341	25292880	A549_Myers.75480	0	.	25292341	25292880	0	1	539	0
chr2	25292406	25293036	B_Cells_Pritchard.2683009	0	+	25292406	25293036	0	1	630	0
chr2	25292658	25292979	B_cells_Cheung.166112	0	.	25292658	25292979	0	1	321	0
chr2	25300549	25300863	B_Cells_Pritchard.2683055	0	.	25300549	25300863	0	1	314	0
chr2	25300701	25301025	A549_Myers.75481	0	.	25300701	25301025	0	1	324	0
chr2	25303416	25303979	B_Cells_Pritchard.2683073	0	.	25303416	25303979	0	1	563	0
chr2	25421103	25421863	B_cells_Cheung.166159	0	.	25421103	25421863	0	1	760	0
chr2	25421108	25421696	prostate_carcinoma.85617	0	.	25421108	25421696	0	1	588	0
chr2	25421119	25421916	REMC_LuminalBreast.84792	0	.	25421119	25421916	0	1	797	0
chr2	25425252	25427084	REMC_LuminalBreast.84794	0	.	25425252	25427084	0	1	1832	0
chr2	25425984	25426978	REMC_MyoepithelialBreast.78669	0	.	25425984	25426978	0	1	994	0
chr2	25427185	25428367	REMC_MyoepithelialBreast.78670	0	.	25427185	25428367	0	1	1182	0
chr2	25427222	25429738	REMC_LuminalBreast.84795	0	.	25427222	25429738	0	1	2516	0
chr2	25431043	25443554	REMC_LuminalBreast.84818	0	.	25431043	25443554	0	1	12511	0
chr2	25431061	25433404	REMC_MyoepithelialBreast.78673	0	.	25431061	25433404	0	1	2343	0
chr2	25431084	25431989	B_cells_Cheung.166163	0	.	25431084	25431989	0	1	905	0
chr2	25431105	25431912	HepG2_Caltech_ENCODE.32632	0	.	25431105	25431912	0	1	807	0
chr2	25431127	25433229	prostate_carcinoma.85621	0	.	25431127	25433229	0	1	2102	0
chr2	25431284	25433002	prostate_normal.51833	0	.	25431284	25433002	0	1	1718	0
chr2	25431607	25432664	brain_AmbionMAQC.39569	0	.	25431607	25432664	0	1	1057	0
chr2	25431841	25432256	A549_Myers.75522	0	.	25431841	25432256	0	1	415	0
chr2	25434428	25437396	REMC_MyoepithelialBreast.78700	0	.	25434428	25437396	0	1	2968	0
chr2	25437636	25442348	REMC_MyoepithelialBreast.78701	0	.	25437636	25442348	0	1	4712	0
chr2	25437924	25438352	prostate_carcinoma.85623	0	.	25437924	25438352	0	1	428	0
chr2	25438312	25438698	A549_Myers.75524	0	.	25438312	25438698	0	1	386	0
chr2	25438566	25443537	B_cells_Cheung.166164	0	.	25438566	25443537	0	1	4971	0
chr2	25439684	25440227	CD4_Plagnol_resting.55854	0	.	25439684	25440227	0	1	543	0
chr2	25442562	25443559	REMC_MyoepithelialBreast.78702	0	.	25442562	25443559	0	1	997	0
chr2	25442963	25443480	prostate_carcinoma.85627	0	.	25442963	25443480	0	1	517	0
chr2	25447257	25449409	brain_AmbionMAQC.39573	0	.	25447257	25449409	0	1	2152	0
chr2	25447487	25450588	BT20_Thompson.19545	0	.	25447487	25450588	0	1	3101	0
chr2	25448088	25450783	HIT000021386	0	+	25448088	25450783	0	1	2695	0
chr2	25448343	25448990	H9_polyA+.39793	0	.	25448343	25448990	0	1	647	0
chr2	25448499	25449319	BT474_Burge_Thompson.31142	0	.	25448499	25449319	0	1	820	0
chr2	25448558	25449827	MIP101.59667	0	.	25448558	25449827	0	1	1269	0
chr2	25448624	25449371	ZR751_Thompson.21434	0	.	25448624	25449371	0	1	747	0
chr2	25449056	25449982	CD4_Plagnol_resting.55876	0	.	25449056	25449982	0	1	926	0
chr2	25449489	25450674	brain_AmbionMAQC.39574	0	.	25449489	25450674	0	1	1185	0
chr2	25449766	25450363	HeLa_polyA+_Chen.31694	0	.	25449766	25450363	0	1	597	0
chr2	25449965	25450419	A549_Myers.75528	0	.	25449965	25450419	0	1	454	0
chr2	25775113	25776111	REMC_LuminalBreast.84814	0	.	25775113	25776111	0	1	998	0
chr2	25789919	25790986	REMC_LuminalBreast.84815	0	.	25789919	25790986	0	1	1067	0
chr2	25802337	25803519	REMC_LuminalBreast.84816	0	.	25802337	25803519	0	1	1182	0
chr2	25806921	25808072	ZR751_Thompson.21435	0	.	25806921	25808072	0	1	1151	0
chr2	25807692	25808801	H9_polyA+.39824	0	+	25807692	25808801	0	2	248,466	0,643
chr2	25808057	25808833	HeLa_polyA+_Chen.31698	0	.	25808057	25808833	0	1	776	0
chr2	25808170	25809279	melanoma_Garraway_short_term_cultures.59799	0	.	25808170	25809279	0	1	1109	0
chr2	25808251	25809513	B_cells_Cheung.166175	0	.	25808251	25809513	0	1	1262	0
chr2	25808289	25808808	MCF7_Burge_Thompson.28373	0	.	25808289	25808808	0	1	519	0
chr2	25808380	25810558	NEC_from_H9.65865	0	+	25808380	25810558	0	2	468,131	0,2047
chr2	25808439	25809088	K562.39523	0	.	25808439	25809088	0	1	649	0
chr2	26073998	26074466	A549_Myers.75589	0	.	26073998	26074466	0	1	468	0
chr2	26221327	26224509	REMC_BreastStem.43212	0	.	26221327	26224509	0	1	3182	0
chr2	26232715	26233340	REMC_LuminalBreast.84879	0	.	26232715	26233340	0	1	625	0
chr2	26234357	26235660	REMC_MyoepithelialBreast.78771	0	.	26234357	26235660	0	1	1303	0
chr2	26240680	26241387	REMC_MyoepithelialBreast.78775	0	.	26240680	26241387	0	1	707	0
chr2	26369690	26370523	REMC_LuminalBreast.84903	0	.	26369690	26370523	0	1	833	0
chr2	26374963	26376422	REMC_LuminalBreast.84905	0	.	26374963	26376422	0	1	1459	0
chr2	26375148	26375594	H1_rRNA-depleted_UCSD_REMC.75257	0	.	26375148	26375594	0	1	446	0
chr2	26722682	26725246	prostate_carcinoma.85775	0	.	26722682	26725246	0	1	2564	0
chr2	26730680	26731390	prostate_normal.51937	0	.	26730680	26731390	0	1	710	0
chr2	26736520	26737300	prostate_carcinoma.85777	0	.	26736520	26737300	0	1	780	0
chr2	26749836	26751502	prostate_carcinoma.85778	0	-	26749836	26751502	0	2	59,753	0,913
chr2	26750966	26751530	prostate_normal.51941	0	.	26750966	26751530	0	1	564	0
chr2	26752154	26752542	A549_Myers.75711	0	.	26752154	26752542	0	1	388	0
chr2	26882399	26883134	B_Cells_Pritchard.2688015	0	+	26882399	26883134	0	1	735	0
chr2	26882868	26883426	B_cells_Cheung.166413	0	.	26882868	26883426	0	1	558	0
chr2	26883563	26883945	B_cells_Cheung.166414	0	.	26883563	26883945	0	1	382	0
chr2	26893039	26893508	BT474_Burge_Thompson.31205	0	.	26893039	26893508	0	1	469	0
chr2	27038026	27038442	A549_Myers.75778	0	.	27038026	27038442	0	1	416	0
chr2	27230785	27231849	prostate_carcinoma.85850	0	.	27230785	27231849	0	1	1064	0
chr2	27643573	27644355	B_Cells_Pritchard.2688891	0	.	27643573	27644355	0	1	782	0
chr2	27643662	27649265	BT20_Thompson.19609	0	.	27643662	27649265	0	1	5603	0
chr2	27644195	27644817	melanoma_Garraway_short_term_cultures.59979	0	.	27644195	27644817	0	1	622	0
chr2	27644357	27644976	B_cells_Cheung.166667	0	.	27644357	27644976	0	1	619	0
chr2	27644457	27644894	B_Cells_Pritchard.2688893	0	.	27644457	27644894	0	1	437	0
chr2	27644881	27645799	prostate_normal.52006	0	.	27644881	27645799	0	1	918	0
chr2	27645014	27646748	B_Cells_Pritchard.2688895	0	.	27645014	27646748	0	1	1734	0
chr2	27645036	27646743	K562.39682	0	.	27645036	27646743	0	1	1707	0
chr2	27645051	27645433	B_cells_Cheung.166668	0	.	27645051	27645433	0	1	382	0
chr2	27645094	27645543	testes_Burge.47330	0	.	27645094	27645543	0	1	449	0
chr2	27645649	27646247	B_cells_Cheung.166669	0	.	27645649	27646247	0	1	598	0
chr2	27646300	27646816	B_cells_Cheung.166670	0	.	27646300	27646816	0	1	516	0
chr2	27647067	27647489	K562.39681	0	.	27647067	27647489	0	1	422	0
chr2	27647385	27647868	B_cells_Cheung.166671	0	.	27647385	27647868	0	1	483	0
chr2	27647411	27647988	B_Cells_Pritchard.2688899	0	.	27647411	27647988	0	1	577	0
chr2	27648114	27649894	H1_polyA+.100145	0	.	27648114	27649894	0	1	1780	0
chr2	27648682	27649096	B_Cells_Pritchard.2688903	0	.	27648682	27649096	0	1	414	0
chr2	27649092	27649685	prostate_carcinoma.86012	0	.	27649092	27649685	0	1	593	0
chr2	27649383	27650453	BT20_Thompson.19610	0	.	27649383	27650453	0	1	1070	0
chr2	27649391	27650828	B_Cells_Pritchard.2688905	0	.	27649391	27650828	0	1	1437	0
chr2	27649572	27649955	K562.39683	0	.	27649572	27649955	0	1	383	0
chr2	27649848	27650586	prostate_carcinoma.86013	0	.	27649848	27650586	0	1	738	0
chr2	27650983	27651467	B_Cells_Pritchard.2688907	0	.	27650983	27651467	0	1	484	0
chr2	27792271	27831270	Rinn_00003611	0	+	27792271	27831270	0	4	832,173,84,340	0,945,36970,38659
chr2	27792285	27792907	A549_Myers.75889	0	.	27792285	27792907	0	1	622	0
chr2	27792300	27832075	Rinn_00003616	0	+	27792300	27832075	0	5	803,173,70,84,1145	0,916,11686,36941,38630
chr2	27792300	27832075	Rinn_00003615	0	+	27792300	27832075	0	4	803,173,77,1145	0,916,36941,38630
chr2	27792300	27793908	Rinn_00004725	0	+	27792300	27793908	0	3	803,173,388	0,916,1220
chr2	27792300	27814714	Rinn_00003612	0	+	27792300	27814714	0	3	803,173,72	0,916,22342
chr2	27792300	27815609	Rinn_00003614	0	+	27792300	27815609	0	3	803,173,889	0,916,22420
chr2	27792300	27815736	Rinn_00004726	0	+	27792300	27815736	0	4	803,173,70,1094	0,916,11686,22342
chr2	27792313	27792651	heart_Raymond.51950	0	.	27792313	27792651	0	1	338	0
chr2	27799628	27800232	A549_Myers.75894	0	.	27799628	27800232	0	1	604	0
chr2	27800148	27800993	H1_polyA+.100187	0	.	27800148	27800993	0	1	845	0
chr2	27810761	27812131	HepG2_Caltech_ENCODE.32746	0	.	27810761	27812131	0	1	1370	0
chr2	27811027	27811923	REMC_LuminalBreast.85219	0	.	27811027	27811923	0	1	896	0
chr2	27811029	27812019	H1_polyA+.100188	0	.	27811029	27812019	0	1	990	0
chr2	27811058	27811983	prostate_carcinoma.86059	0	.	27811058	27811983	0	1	925	0
chr2	27811074	27811981	REMC_MyoepithelialBreast.78941	0	.	27811074	27811981	0	1	907	0
chr2	27811078	27811981	prostate_normal.52023	0	.	27811078	27811981	0	1	903	0
chr2	27812186	27814914	HepG2_Caltech_ENCODE.32747	0	.	27812186	27814914	0	1	2728	0
chr2	27829082	27829487	A549_Myers.75901	0	.	27829082	27829487	0	1	405	0
chr2	27829227	27833993	Rinn_00003617	0	+	27829227	27833993	0	2	91,242	0,4524
chr2	27829671	27840875	MIP101.59897	0	+	27829671	27840875	0	3	1885,247,71	0,4081,11133
chr2	27829707	27830259	liver_polyA+.114140	0	.	27829707	27830259	0	1	552	0
chr2	27830051	27830914	REMC_MyoepithelialBreast.78942	0	.	27830051	27830914	0	1	863	0
chr2	27831204	27831986	MIP101.59898	0	.	27831204	27831986	0	1	782	0
chr2	27832208	27833129	REMC_LuminalBreast.85221	0	.	27832208	27833129	0	1	921	0
chr2	27832249	27834686	H1_polyA+.100189	0	.	27832249	27834686	0	1	2437	0
chr2	27840999	27843026	HepG2_Caltech_ENCODE.32751	0	.	27840999	27843026	0	1	2027	0
chr2	27841859	27844429	REMC_LuminalBreast.85225	0	.	27841859	27844429	0	1	2570	0
chr2	27844310	27845870	HepG2_Caltech_ENCODE.32752	0	.	27844310	27845870	0	1	1560	0
chr2	27844686	27845846	REMC_LuminalBreast.85226	0	.	27844686	27845846	0	1	1160	0
chr2	28417232	28419294	REMC_LuminalBreast.85172	0	.	28417232	28419294	0	1	2062	0
chr2	28423036	28423418	A549_Myers.75965	0	.	28423036	28423418	0	1	382	0
chr2	28423599	28423955	A549_Myers.75966	0	.	28423599	28423955	0	1	356	0
chr2	28432397	28433117	A549_Myers.75970	0	.	28432397	28433117	0	1	720	0
chr2	28435733	28436415	BT474_Burge_Thompson.31259	0	.	28435733	28436415	0	1	682	0
chr2	28435779	28436310	B_cells_Cheung.166749	0	.	28435779	28436310	0	1	531	0
chr2	28435922	28440479	HeLa_polyA+_Chen.31831	0	+	28435922	28440479	0	2	536,21	0,4536
chr2	28435950	28437485	REMC_LuminalBreast.85173	0	.	28435950	28437485	0	1	1535	0
chr2	28435979	28437686	B_Cells_Pritchard.2691151	0	.	28435979	28437686	0	1	1707	0
chr2	28437043	28437432	A549_Myers.75973	0	.	28437043	28437432	0	1	389	0
chr2	28438322	28442052	MIP101.59957	0	.	28438322	28442052	0	1	3730	0
chr2	28440485	28441336	prostate_carcinoma.86129	0	.	28440485	28441336	0	1	851	0
chr2	28440518	28442202	CD4_Plagnol_activated.57759	0	.	28440518	28442202	0	1	1684	0
chr2	28440546	28442082	REMC_LuminalBreast.85175	0	.	28440546	28442082	0	1	1536	0
chr2	28440688	28441688	REMC_BreastStem.43375	0	.	28440688	28441688	0	1	1000	0
chr2	28440756	28442211	CD4_Plagnol_resting.56150	0	.	28440756	28442211	0	1	1455	0
chr2	28440760	28442295	B_cells_Cheung.166751	0	.	28440760	28442295	0	1	1535	0
chr2	28440845	28442353	REMC_MyoepithelialBreast.78970	0	.	28440845	28442353	0	1	1508	0
chr2	28440979	28442103	BT474_Burge_Thompson.31260	0	.	28440979	28442103	0	1	1124	0
chr2	28441041	28442076	MCF7_Burge_Thompson.28467	0	.	28441041	28442076	0	1	1035	0
chr2	28441081	28442078	MDAMB231_Thompson.19572	0	.	28441081	28442078	0	1	997	0
chr2	28453378	28454084	A549_Myers.75978	0	.	28453378	28454084	0	1	706	0
chr2	28459242	28459655	A549_Myers.75981	0	.	28459242	28459655	0	1	413	0
chr2	28462488	28463458	MCF7_Burge_Thompson.28469	0	.	28462488	28463458	0	1	970	0
chr2	28462847	28463483	prostate_carcinoma.86132	0	.	28462847	28463483	0	1	636	0
chr2	28462859	28463722	BT474_Burge_Thompson.31393	0	.	28462859	28463722	0	1	863	0
chr2	28462882	28463557	prostate_normal.52058	0	.	28462882	28463557	0	1	675	0
chr2	28464496	28465032	prostate_carcinoma.86133	0	.	28464496	28465032	0	1	536	0
chr2	28466457	28467674	A549_Myers.75982	0	.	28466457	28467674	0	1	1217	0
chr2	28466667	28468117	MCF7_Burge_Thompson.28470	0	.	28466667	28468117	0	1	1450	0
chr2	28466940	28468146	prostate_carcinoma.86650	0	.	28466940	28468146	0	1	1206	0
chr2	28466998	28467634	B_cells_Cheung.166752	0	.	28466998	28467634	0	1	636	0
chr2	28467358	28467903	prostate_normal.52059	0	.	28467358	28467903	0	1	545	0
chr2	28495107	28504286	REMC_LuminalBreast.85344	0	.	28495107	28504286	0	1	9179	0
chr2	28497276	28497932	MIP101.59963	0	.	28497276	28497932	0	1	656	0
chr2	28498579	28501736	MCF10A_Thompson.19043	0	.	28498579	28501736	0	1	3157	0
chr2	28499033	28499358	CD4_Plagnol_resting.56159	0	.	28499033	28499358	0	1	325	0
chr2	28499039	28499389	B_Cells_Pritchard.2691313	0	.	28499039	28499389	0	1	350	0
chr2	28499058	28501242	prostate_normal.52080	0	.	28499058	28501242	0	1	2184	0
chr2	28499093	28499960	CD4_Plagnol_activated.57765	0	.	28499093	28499960	0	1	867	0
chr2	28499129	28500931	MIP101.59964	0	.	28499129	28500931	0	1	1802	0
chr2	28499332	28500130	A549_Myers.75993	0	.	28499332	28500130	0	1	798	0
chr2	28499475	28500358	MeWo_Garraway.32316	0	.	28499475	28500358	0	1	883	0
chr2	28499504	28500089	adipose_Burge.34676	0	.	28499504	28500089	0	1	585	0
chr2	28499533	28500914	BT474_Burge_Thompson.31268	0	.	28499533	28500914	0	1	1381	0
chr2	28499707	28500242	colon_Burge.33907	0	.	28499707	28500242	0	1	535	0
chr2	28499801	28500389	B_Cells_Pritchard.2691317	0	.	28499801	28500389	0	1	588	0
chr2	28499935	28500849	melanoma_Garraway_short_term_cultures.60037	0	.	28499935	28500849	0	1	914	0
chr2	28500542	28500866	skeletal_muscle_Burge.26077	0	.	28500542	28500866	0	1	324	0
chr2	28500968	28502623	melanoma_Garraway_short_term_cultures.60038	0	.	28500968	28502623	0	1	1655	0
chr2	28501271	28503039	MIP101.59965	0	.	28501271	28503039	0	1	1768	0
chr2	28501333	28503099	MeWo_Garraway.32318	0	.	28501333	28503099	0	1	1766	0
chr2	28501867	28502984	prostate_normal.52082	0	.	28501867	28502984	0	1	1117	0
chr2	28501877	28503033	CD4_Plagnol_activated.57767	0	.	28501877	28503033	0	1	1156	0
chr2	28501897	28502828	BT20_Thompson.19639	0	.	28501897	28502828	0	1	931	0
chr2	28503570	28503948	prostate_normal.52083	0	.	28503570	28503948	0	1	378	0
chr2	28504201	28504752	prostate_normal.52084	0	.	28504201	28504752	0	1	551	0
chr2	28506605	28508565	prostate_carcinoma.86141	0	.	28506605	28508565	0	1	1960	0
chr2	28507792	28508376	A549_Myers.75998	0	.	28507792	28508376	0	1	584	0
chr2	28508976	28510937	REMC_LuminalBreast.85194	0	.	28508976	28510937	0	1	1961	0
chr2	28510852	28511157	A549_Myers.75999	0	.	28510852	28511157	0	1	305	0
chr2	28510990	28513297	REMC_LuminalBreast.85195	0	.	28510990	28513297	0	1	2307	0
chr2	28512947	28513682	A549_Myers.76000	0	.	28512947	28513682	0	1	735	0
chr2	28514238	28517165	REMC_MyoepithelialBreast.79154	0	.	28514238	28517165	0	1	2927	0
chr2	28514459	28517187	REMC_BreastStem.43411	0	.	28514459	28517187	0	1	2728	0
chr2	28515254	28517661	REMC_LuminalBreast.85197	0	.	28515254	28517661	0	1	2407	0
chr2	28516026	28516365	A549_Myers.76001	0	.	28516026	28516365	0	1	339	0
chr2	28525474	28525781	A549_Myers.76002	0	.	28525474	28525781	0	1	307	0
chr2	28528426	28529072	A549_Myers.76003	0	.	28528426	28529072	0	1	646	0
chr2	28529591	28529930	A549_Myers.76004	0	.	28529591	28529930	0	1	339	0
chr2	28729751	28733808	REMC_LuminalBreast.85207	0	.	28729751	28733808	0	1	4057	0
chr2	28733927	28735659	REMC_LuminalBreast.85208	0	.	28733927	28735659	0	1	1732	0
chr2	28737654	28738199	REMC_LuminalBreast.85210	0	.	28737654	28738199	0	1	545	0
chr2	28738326	28743043	REMC_LuminalBreast.85211	0	.	28738326	28743043	0	1	4717	0
chr2	28745047	28753276	REMC_LuminalBreast.85212	0	.	28745047	28753276	0	1	8229	0
chr2	28758859	28760144	REMC_LuminalBreast.85215	0	.	28758859	28760144	0	1	1285	0
chr2	28761741	28762235	B_Cells_Pritchard.2692237	0	.	28761741	28762235	0	1	494	0
chr2	28778777	28779202	A549_Myers.76041	0	.	28778777	28779202	0	1	425	0
chr2	28778976	28779408	prostate_carcinoma.86570	0	.	28778976	28779408	0	1	432	0
chr2	28783493	28784429	prostate_carcinoma.86573	0	.	28783493	28784429	0	1	936	0
chr2	28802706	28803240	B_cells_Cheung.167048	0	.	28802706	28803240	0	1	534	0
chr2	28813929	28814523	B_cells_Cheung.167056	0	.	28813929	28814523	0	1	594	0
chr2	28815985	28816320	H1_rRNA-depleted_UCSD_REMC.75515	0	.	28815985	28816320	0	1	335	0
chr2	28825826	28826690	HeLa_polyA+_Chen.31862	0	.	28825826	28826690	0	1	864	0
chr2	28825850	28826239	A549_Myers.76044	0	.	28825850	28826239	0	1	389	0
chr2	28948561	28949873	REMC_MyoepithelialBreast.79484	0	.	28948561	28949873	0	1	1312	0
chr2	28948676	28949269	B_cells_Cheung.167014	0	.	28948676	28949269	0	1	593	0
chr2	28965874	28968407	REMC_MyoepithelialBreast.79491	0	.	28965874	28968407	0	1	2533	0
chr2	28967337	28968002	B_Cells_Pritchard.2692629	0	.	28967337	28968002	0	1	665	0
chr2	28967337	28969135	HepG2_Caltech_ENCODE.32800	0	.	28967337	28969135	0	1	1798	0
chr2	28967500	28968419	H1_polyA+.100268	0	.	28967500	28968419	0	1	919	0
chr2	29025959	29029595	B_cells_Cheung.167033	0	.	29025959	29029595	0	1	3636	0
chr2	29026593	29029639	REMC_LuminalBreast.85935	0	.	29026593	29029639	0	1	3046	0
chr2	29027485	29029752	CD4_Plagnol_activated.57798	0	.	29027485	29029752	0	1	2267	0
chr2	29027954	29029297	ZR751_Thompson.21545	0	.	29027954	29029297	0	1	1343	0
chr2	29027981	29029041	MIP101.60051	0	.	29027981	29029041	0	1	1060	0
chr2	29028170	29029399	REMC_BreastStem.43429	0	.	29028170	29029399	0	1	1229	0
chr2	29028249	29029483	brain_AmbionMAQC.39766	0	.	29028249	29029483	0	1	1234	0
chr2	29028291	29029003	prostate_normal.52113	0	.	29028291	29029003	0	1	712	0
chr2	29028470	29028819	A549_Myers.76063	0	.	29028470	29028819	0	1	349	0
chr2	29166997	29168424	REMC_MyoepithelialBreast.79115	0	.	29166997	29168424	0	1	1427	0
chr2	30198469	30198905	B_Cells_Pritchard.2695923	0	.	30198469	30198905	0	1	436	0
chr2	30208714	30220174	ENST00000455424	0	-	30208714	30220174	0	3	299,99,3165	0,3907,8295
chr2	30241916	30244626	REMC_BreastStem.43459	0	.	30241916	30244626	0	1	2710	0
chr2	30242597	30258909	REMC_LuminalBreast.86279	0	.	30242597	30258909	0	1	16312	0
chr2	30243269	30244753	CD4_Snyder.62974	0	.	30243269	30244753	0	1	1484	0
chr2	30244001	30244499	A549_Myers.76137	0	.	30244001	30244499	0	1	498	0
chr2	30250556	30252226	REMC_BreastStem.43465	0	.	30250556	30252226	0	1	1670	0
chr2	30253422	30259041	REMC_MyoepithelialBreast.79425	0	.	30253422	30259041	0	1	5619	0
chr2	30253972	30255640	REMC_BreastStem.43467	0	.	30253972	30255640	0	1	1668	0
chr2	30255167	30255815	CD4_Snyder.62985	0	.	30255167	30255815	0	1	648	0
chr2	30255293	30255715	A549_Myers.76139	0	.	30255293	30255715	0	1	422	0
chr2	30258962	30259387	REMC_LuminalBreast.86280	0	.	30258962	30259387	0	1	425	0
chr2	30262402	30262935	REMC_BreastStem.43471	0	.	30262402	30262935	0	1	533	0
chr2	30279745	30281780	REMC_LuminalBreast.85345	0	.	30279745	30281780	0	1	2035	0
chr2	30280543	30282285	REMC_MyoepithelialBreast.79157	0	.	30280543	30282285	0	1	1742	0
chr2	30408918	30435926	Rinn_00004739	0	+	30408918	30435926	0	3	38,1407,90	0,17387,26918
chr2	30408918	30435926	Rinn_00004738	0	+	30408918	30435926	0	3	38,211,90	0,17387,26918
chr2	30412497	30413956	B_Cells_Pritchard.2696603	0	.	30412497	30413956	0	1	1459	0
chr2	30412607	30413548	B_cells_Cheung.167151	0	.	30412607	30413548	0	1	941	0
chr2	30414279	30414762	B_cells_Cheung.167154	0	.	30414279	30414762	0	1	483	0
chr2	30414337	30414975	B_Cells_Pritchard.2696599	0	.	30414337	30414975	0	1	638	0
chr2	30423029	30435926	Rinn_00004740	0	+	30423029	30435926	0	3	456,1407,90	0,3276,12807
chr2	30424377	30425136	prostate_carcinoma.86242	0	.	30424377	30425136	0	1	759	0
chr2	30426020	30435996	REMC_MyoepithelialBreast.79166	0	+	30426020	30435996	0	2	496,159	0,9817
chr2	30426159	30436820	Rinn_00003622	0	+	30426159	30436820	0	2	357,984	0,9677
chr2	30426311	30427170	B_cells_Cheung.167159	0	.	30426311	30427170	0	1	859	0
chr2	30426315	30427063	prostate_carcinoma.86243	0	.	30426315	30427063	0	1	748	0
chr2	30427408	30428111	prostate_normal.52135	0	.	30427408	30428111	0	1	703	0
chr2	30428120	30428730	B_Cells_Pritchard.2696667	0	.	30428120	30428730	0	1	610	0
chr2	30435844	30436770	prostate_carcinoma.86245	0	.	30435844	30436770	0	1	926	0
chr2	30435892	30436855	B_Cells_Pritchard.2696689	0	.	30435892	30436855	0	1	963	0
chr2	30436168	30436829	heart_Burge.25517	0	.	30436168	30436829	0	1	661	0
chr2	30739643	30740092	A549_Myers.76179	0	.	30739643	30740092	0	1	449	0
chr2	30754131	30756265	HIT000013905	0	-	30754131	30756265	0	2	885,1215	0,919
chr2	30768613	30769026	A549_Myers.76181	0	.	30768613	30769026	0	1	413	0
chr2	30771775	30773024	BT474_Burge_Thompson.31300	0	.	30771775	30773024	0	1	1249	0
chr2	31247191	31248079	HIT000252850	0	-	31247191	31248079	0	1	888	0
chr2	31346327	31347998	CD4_Plagnol_resting.56237	0	.	31346327	31347998	0	1	1671	0
chr2	31346329	31346907	B_cells_Cheung.167265	0	.	31346329	31346907	0	1	578	0
chr2	31351999	31357065	REMC_LuminalBreast.85410	0	.	31351999	31357065	0	1	5066	0
chr2	31354348	31356431	REMC_MyoepithelialBreast.79310	0	.	31354348	31356431	0	1	2083	0
chr2	31355449	31356097	prostate_carcinoma.86297	0	.	31355449	31356097	0	1	648	0
chr2	31360763	31363050	REMC_MyoepithelialBreast.79312	0	.	31360763	31363050	0	1	2287	0
chr2	31361780	31363297	H1_polyA+.100397	0	.	31361780	31363297	0	1	1517	0
chr2	31370012	31371234	H1_polyA+.100365	0	.	31370012	31371234	0	1	1222	0
chr2	31372303	31374767	REMC_MyoepithelialBreast.79317	0	.	31372303	31374767	0	1	2464	0
chr2	31378011	31378899	H1_polyA+.100368	0	.	31378011	31378899	0	1	888	0
chr2	31383666	31384832	REMC_MyoepithelialBreast.79324	0	.	31383666	31384832	0	1	1166	0
chr2	31388100	31389704	REMC_MyoepithelialBreast.79327	0	.	31388100	31389704	0	1	1604	0
chr2	31391865	31393482	H1_polyA+.100375	0	.	31391865	31393482	0	1	1617	0
chr2	31400193	31404884	REMC_MyoepithelialBreast.79330	0	.	31400193	31404884	0	1	4691	0
chr2	31405036	31409492	REMC_MyoepithelialBreast.79331	0	.	31405036	31409492	0	1	4456	0
chr2	31504978	31506209	REMC_LuminalBreast.85422	0	.	31504978	31506209	0	1	1231	0
chr2	31506430	31507704	REMC_LuminalBreast.85423	0	.	31506430	31507704	0	1	1274	0
chr2	31556736	31557798	H1_polyA+.100388	0	.	31556736	31557798	0	1	1062	0
chr2	31668231	31668730	ZR751_Thompson.21569	0	.	31668231	31668730	0	1	499	0
chr2	31668319	31668736	BT474_Burge_Thompson.31320	0	.	31668319	31668736	0	1	417	0
chr2	31668332	31668719	B_Cells_Pritchard.2700105	0	.	31668332	31668719	0	1	387	0
chr2	31730189	31730638	liver_polyA+.114452	0	.	31730189	31730638	0	1	449	0
chr2	31731305	31732218	liver_polyA+.114454	0	.	31731305	31732218	0	1	913	0
chr2	31733955	31734370	liver_polyA+.114456	0	.	31733955	31734370	0	1	415	0
chr2	31743319	31744277	prostate_carcinoma.86310	0	.	31743319	31744277	0	1	958	0
chr2	31750140	31751178	liver_polyA+.114465	0	-	31750140	31751178	0	4	205,80,295,56	0,215,534,982
chr2	31752567	31753436	liver_polyA+.114469	0	.	31752567	31753436	0	1	869	0
chr2	31767248	31768023	prostate_carcinoma.86315	0	.	31767248	31768023	0	1	775	0
chr2	31767385	31768171	liver_polyA+.114479	0	.	31767385	31768171	0	1	786	0
chr2	31767627	31768171	kidney_Gilad.73903	0	.	31767627	31768171	0	1	544	0
chr2	31768221	31768936	prostate_carcinoma.86316	0	.	31768221	31768936	0	1	715	0
chr2	31787252	31787663	liver_polyA+.114494	0	.	31787252	31787663	0	1	411	0
chr2	31856440	31857081	B_Cells_Pritchard.2700581	0	.	31856440	31857081	0	1	641	0
chr2	31856619	31857139	A549_Myers.76253	0	.	31856619	31857139	0	1	520	0
chr2	31884276	31884692	A549_Myers.76254	0	.	31884276	31884692	0	1	416	0
chr2	31892031	31892663	prostate_carcinoma.86322	0	.	31892031	31892663	0	1	632	0
chr2	31897845	31899303	B_Cells_Pritchard.2700693	0	.	31897845	31899303	0	1	1458	0
chr2	31906023	31906529	REMC_MyoepithelialBreast.79353	0	.	31906023	31906529	0	1	506	0
chr2	31906361	31933493	B_Cells_Pritchard.2700847	0	-	31906361	31933493	0	12	158,372,2258,566,80,437,537,606,1347,212,79,3339	0,1200,3987,9918,10575,10659,11364,11929,12829,15534,15761,23793
chr2	31911966	31916835	REMC_LuminalBreast.85432	0	.	31911966	31916835	0	1	4869	0
chr2	31912774	31916219	REMC_MyoepithelialBreast.79357	0	.	31912774	31916219	0	1	3445	0
chr2	31913044	31913505	B_cells_Cheung.167281	0	.	31913044	31913505	0	1	461	0
chr2	31913731	31915095	B_cells_Cheung.167282	0	.	31913731	31915095	0	1	1364	0
chr2	31914127	31915048	HepG2_Caltech_ENCODE.32833	0	.	31914127	31915048	0	1	921	0
chr2	31914127	31916142	B_Cells_Pritchard.2700893	0	+	31914127	31916142	0	1	2015	0
chr2	31916907	31917436	HepG2_Caltech_ENCODE.32835	0	.	31916907	31917436	0	1	529	0
chr2	31916920	31917478	B_cells_Cheung.167284	0	.	31916920	31917478	0	1	558	0
chr2	31916925	31917474	CD4_Plagnol_resting.56242	0	.	31916925	31917474	0	1	549	0
chr2	31916942	31917461	prostate_carcinoma.86336	0	.	31916942	31917461	0	1	519	0
chr2	31917064	31918730	REMC_MyoepithelialBreast.79359	0	.	31917064	31918730	0	1	1666	0
chr2	31922293	31944387	REMC_LuminalBreast.85436	0	.	31922293	31944387	0	1	22094	0
chr2	31922335	31929013	REMC_MyoepithelialBreast.79362	0	.	31922335	31929013	0	1	6678	0
chr2	31926668	31929026	B_cells_Cheung.167294	0	.	31926668	31929026	0	1	2358	0
chr2	31927845	31928935	H1_polyA+.100408	0	.	31927845	31928935	0	1	1090	0
chr2	31933830	31941680	HepG2_Caltech_ENCODE.32845	0	.	31933830	31941680	0	1	7850	0
chr2	31933841	31943648	B_Cells_Pritchard.2700723	0	-	31933841	31943648	0	6	2673,873,74,445,1210,1805	0,3562,4547,4651,6594,8002
chr2	31937397	31944537	REMC_MyoepithelialBreast.79364	0	.	31937397	31944537	0	1	7140	0
chr2	31939810	31941699	H1_polyA+.100413	0	.	31939810	31941699	0	1	1889	0
chr2	31940101	31941701	B_cells_Cheung.167302	0	.	31940101	31941701	0	1	1600	0
chr2	32700298	32701438	B_cells_Cheung.167554	0	.	32700298	32701438	0	1	1140	0
chr2	32700300	32702385	REMC_MyoepithelialBreast.79670	0	.	32700300	32702385	0	1	2085	0
chr2	32700374	32702441	REMC_LuminalBreast.85500	0	.	32700374	32702441	0	1	2067	0
chr2	32700382	32702358	HepG2_Caltech_ENCODE.32885	0	.	32700382	32702358	0	1	1976	0
chr2	32700389	32701888	B_Cells_Pritchard.2702265	0	.	32700389	32701888	0	1	1499	0
chr2	32700446	32701472	melanoma_Garraway_short_term_cultures.60269	0	.	32700446	32701472	0	1	1026	0
chr2	32700535	32701972	H1_polyA+.100783	0	.	32700535	32701972	0	1	1437	0
chr2	32701248	32702120	REMC_BreastStem.43551	0	.	32701248	32702120	0	1	872	0
chr2	32702596	32705121	REMC_LuminalBreast.85501	0	.	32702596	32705121	0	1	2525	0
chr2	32904013	33007710	NR_027098	0	+	32904013	33007710	0	6	68,221,103,61,1337,201	0,15570,73097,76620,99910,103496
chr2	32904013	33005264	ENST00000414054	0	+	32904013	33005264	0	5	68,221,103,61,1341	0,15570,73097,76620,99910
chr2	32904013	33007710	HIT000020037	0	+	32904013	33007710	0	6	68,221,103,61,1345,192	0,15570,73097,76620,99910,103505
chr2	32945092	32945678	B_Cells_Pritchard.2703141	0	.	32945092	32945678	0	1	586	0
chr2	32945266	32945599	HepG2_Caltech_ENCODE.32888	0	.	32945266	32945599	0	1	333	0
chr2	32945278	32945673	CD4_Plagnol_resting.56344	0	.	32945278	32945673	0	1	395	0
chr2	32945282	32945583	MeWo_Garraway.32414	0	.	32945282	32945583	0	1	301	0
chr2	32945293	32945687	H1_rRNA-depleted_UCSD_REMC.75728	0	.	32945293	32945687	0	1	394	0
chr2	32945300	32945684	MeI_Garraway.15559	0	.	32945300	32945684	0	1	384	0
chr2	32945303	32945700	K562.39813	0	.	32945303	32945700	0	1	397	0
chr2	32945309	32945682	MIP101.60266	0	.	32945309	32945682	0	1	373	0
chr2	32945331	32945692	melanoma_Garraway_short_term_cultures.60272	0	.	32945331	32945692	0	1	361	0
chr2	32961371	33005094	HIT000388342	0	+	32961371	33005094	0	4	26,103,61,1174	0,15739,19262,42549
chr2	32961371	33005093	NR_027100	0	+	32961371	33005093	0	4	26,103,61,1170	0,15739,19262,42552
chr2	32961371	33005094	HIT000388341	0	+	32961371	33005094	0	4	26,103,61,1171	0,15739,19262,42552
chr2	32961371	33005093	ENST00000435075	0	+	32961371	33005093	0	4	26,103,61,1170	0,15739,19262,42552
chr2	32987090	32995193	prostate_carcinoma.86500	0	+	32987090	32995193	0	3	9,138,180	0,7688,7923
chr2	32993098	32995192	liver_polyA+.114747	0	+	32993098	32995192	0	3	58,121,179	0,1697,1915
chr2	32994736	32995193	A549_Myers.76333	0	+	32994736	32995193	0	2	180,180	0,277
chr2	32994736	32995193	A549_Myers.76334	0	.	32994736	32995193	0	1	457	0
chr2	32994746	32995184	IMR90_UCSD_REMC.43387	0	+	32994746	32995184	0	1	438	0
chr2	32994746	32995195	H1_rRNA-depleted_UCSD_REMC.75727	0	.	32994746	32995195	0	1	449	0
chr2	32994748	32995196	K562.39829	0	.	32994748	32995196	0	1	448	0
chr2	32994752	32995184	HepG2_Caltech_ENCODE.32889	0	.	32994752	32995184	0	1	432	0
chr2	32994768	32995189	H1_polyA+.100541	0	.	32994768	32995189	0	1	421	0
chr2	32994769	32995195	melanoma_Garraway_short_term_cultures.60273	0	.	32994769	32995195	0	1	426	0
chr2	32994772	32995186	BT474_Burge_Thompson.31345	0	.	32994772	32995186	0	1	414	0
chr2	32994774	32995196	CD4_Snyder.63237	0	.	32994774	32995196	0	1	422	0
chr2	32994775	32995195	B_cells_Cheung.167665	0	.	32994775	32995195	0	1	420	0
chr2	32994776	32995184	CD4_Plagnol_activated.57909	0	.	32994776	32995184	0	1	408	0
chr2	32994777	32995193	CD4_Plagnol_resting.56345	0	.	32994777	32995193	0	1	416	0
chr2	32994783	32995191	MeWo_Garraway.32416	0	.	32994783	32995191	0	1	408	0
chr2	32994784	32995188	HeLa_Bartel_WT_32hr.10625	0	.	32994784	32995188	0	1	404	0
chr2	32994785	32995186	MCF7_Burge_Thompson.28544	0	.	32994785	32995186	0	1	401	0
chr2	32994785	32995195	B_Cells_Pritchard.2703267	0	+	32994785	32995195	0	1	410	0
chr2	32994808	32995141	IMR90_UCSD_REMC.43388	0	-	32994808	32995141	0	1	333	0
chr2	32994812	32995168	BT20_Thompson.19699	0	.	32994812	32995168	0	1	356	0
chr2	33684701	33687213	H1_polyA+.100624	0	.	33684701	33687213	0	1	2512	0
chr2	33685074	33685533	B_Cells_Pritchard.2705337	0	.	33685074	33685533	0	1	459	0
chr2	33688846	33699756	H1_polyA+.100626	0	.	33688846	33699756	0	1	10910	0
chr2	33692500	33693197	B_cells_Cheung.167795	0	.	33692500	33693197	0	1	697	0
chr2	33692829	33693286	H9_polyA+.40117	0	.	33692829	33693286	0	1	457	0
chr2	33699913	33701371	B_cells_Cheung.167799	0	.	33699913	33701371	0	1	1458	0
chr2	33699926	33706203	H1_polyA+.100627	0	.	33699926	33706203	0	1	6277	0
chr2	33740677	33741705	H1_polyA+.100646	0	.	33740677	33741705	0	1	1028	0
chr2	33742400	33742719	H9_polyA+.40128	0	.	33742400	33742719	0	1	319	0
chr2	33778802	33779182	A549_Myers.76370	0	.	33778802	33779182	0	1	380	0
chr2	33790010	33792146	melanoma_Garraway_short_term_cultures.60301	0	.	33790010	33792146	0	1	2136	0
chr2	33790031	33792141	MeWo_Garraway.32433	0	.	33790031	33792141	0	1	2110	0
chr2	33793298	33796964	MeWo_Garraway.32440	0	.	33793298	33796964	0	1	3666	0
chr2	33794710	33795179	B_cells_Cheung.167818	0	.	33794710	33795179	0	1	469	0
chr2	33794738	33796983	melanoma_Garraway_short_term_cultures.60305	0	.	33794738	33796983	0	1	2245	0
chr2	33797208	33803873	melanoma_Garraway_short_term_cultures.60306	0	.	33797208	33803873	0	1	6665	0
chr2	33797777	33800555	MeWo_Garraway.32441	0	.	33797777	33800555	0	1	2778	0
chr2	33809782	33810674	melanoma_Garraway_short_term_cultures.60308	0	.	33809782	33810674	0	1	892	0
chr2	33814832	33815265	MeWo_Garraway.32437	0	.	33814832	33815265	0	1	433	0
chr2	33815212	33815950	melanoma_Garraway_short_term_cultures.60311	0	.	33815212	33815950	0	1	738	0
chr2	33815347	33815921	MeWo_Garraway.32444	0	.	33815347	33815921	0	1	574	0
chr2	33836017	33837009	melanoma_Garraway_short_term_cultures.60316	0	.	33836017	33837009	0	1	992	0
chr2	33836019	33836980	MeWo_Garraway.32469	0	.	33836019	33836980	0	1	961	0
chr2	33871073	33872425	MeWo_Garraway.32461	0	.	33871073	33872425	0	1	1352	0
chr2	33871075	33872417	melanoma_Garraway_short_term_cultures.60329	0	.	33871075	33872417	0	1	1342	0
chr2	33876386	33876771	melanoma_Garraway_short_term_cultures.60332	0	.	33876386	33876771	0	1	385	0
chr2	33879604	33880553	MeWo_Garraway.32470	0	.	33879604	33880553	0	1	949	0
chr2	33899102	33900196	melanoma_Garraway_short_term_cultures.60339	0	.	33899102	33900196	0	1	1094	0
chr2	33899197	33899770	MeI_Garraway.15578	0	.	33899197	33899770	0	1	573	0
chr2	33899213	33899898	MeWo_Garraway.32500	0	.	33899213	33899898	0	1	685	0
chr2	33935458	33935863	MeWo_Garraway.32512	0	.	33935458	33935863	0	1	405	0
chr2	33935461	33936195	melanoma_Garraway_short_term_cultures.60350	0	.	33935461	33936195	0	1	734	0
chr2	34032530	34033176	melanoma_Garraway_short_term_cultures.60378	0	.	34032530	34033176	0	1	646	0
chr2	34032612	34032922	MeWo_Garraway.32810	0	.	34032612	34032922	0	1	310	0
chr2	34033351	34035239	melanoma_Garraway_short_term_cultures.60379	0	.	34033351	34035239	0	1	1888	0
chr2	34033509	34034924	MeWo_Garraway.32811	0	.	34033509	34034924	0	1	1415	0
chr2	34133491	34133854	MeWo_Garraway.32823	0	.	34133491	34133854	0	1	363	0
chr2	34148041	34151566	melanoma_Garraway_short_term_cultures.60393	0	.	34148041	34151566	0	1	3525	0
chr2	34184269	34186035	melanoma_Garraway_short_term_cultures.60399	0	.	34184269	34186035	0	1	1766	0
chr2	34281419	34282134	MeI_Garraway.15584	0	.	34281419	34282134	0	1	715	0
chr2	34281554	34282222	melanoma_Garraway_short_term_cultures.60412	0	.	34281554	34282222	0	1	668	0
chr2	34511653	34512409	melanoma_Garraway_short_term_cultures.60425	0	.	34511653	34512409	0	1	756	0
chr2	34564812	34566510	melanoma_Garraway_short_term_cultures.60431	0	.	34564812	34566510	0	1	1698	0
chr2	34577002	34579149	melanoma_Garraway_short_term_cultures.60437	0	.	34577002	34579149	0	1	2147	0
chr2	34756020	34756938	B_Cells_Pritchard.2707843	0	.	34756020	34756938	0	1	918	0
chr2	34756150	34801365	HIT000296228	0	-	34756150	34801365	0	3	348,199,796	0,35999,44419
chr2	34861655	34862233	B_Cells_Pritchard.2708103	0	.	34861655	34862233	0	1	578	0
chr2	34883945	34884328	kidney_Raymond.84911	0	.	34883945	34884328	0	1	383	0
chr2	36314494	36315144	B_Cells_Pritchard.2710637	0	.	36314494	36315144	0	1	650	0
chr2	36433882	36436260	REMC_MyoepithelialBreast.79458	0	-	36433882	36436260	0	2	1746,526	0,1852
chr2	36434521	36436303	H1_polyA+.100608	0	-	36434521	36436303	0	2	1107,569	0,1213
chr2	36434887	36436249	REMC_LuminalBreast.85591	0	-	36434887	36436249	0	2	741,515	0,847
chr2	36435395	36436148	Rinn_00005129	0	-	36435395	36436148	0	2	233,384	0,369
chr2	36435395	36436217	NR_037631	0	-	36435395	36436217	0	2	233,483	0,339
chr2	36435396	36436158	REMC_BreastStem.43561	0	-	36435396	36436158	0	2	232,424	0,338
chr2	36435398	36436285	BT20_Thompson.19707	0	-	36435398	36436285	0	2	230,551	0,336
chr2	36435398	36436240	H9_polyA+.40135	0	-	36435398	36436240	0	2	230,506	0,336
chr2	36435398	36436269	HeLa_polyA+_Chen.31951	0	-	36435398	36436269	0	2	230,535	0,336
chr2	36435410	36436140	Rinn_00004205	0	-	36435410	36436140	0	2	218,407	0,323
chr2	36435422	36436231	MDAMB231_Thompson.19662	0	-	36435422	36436231	0	2	206,497	0,312
chr2	36918474	36922135	MCF10A_Thompson.19094	0	.	36918474	36922135	0	1	3661	0
chr2	36919233	36922118	prostate_normal.52316	0	.	36919233	36922118	0	1	2885	0
chr2	36919312	36921438	CD4_Snyder.63251	0	.	36919312	36921438	0	1	2126	0
chr2	36919751	36921330	HeLa_polyA+_Chen.31953	0	.	36919751	36921330	0	1	1579	0
chr2	36919965	36922593	K562.39845	0	.	36919965	36922593	0	1	2628	0
chr2	36920245	36922687	MeWo_Garraway.32528	0	.	36920245	36922687	0	1	2442	0
chr2	36920450	36922193	MCF7_Burge_Thompson.28555	0	.	36920450	36922193	0	1	1743	0
chr2	36920489	36921702	brain_AmbionMAQC.39874	0	.	36920489	36921702	0	1	1213	0
chr2	36920582	36921573	MDAMB231_Thompson.19664	0	.	36920582	36921573	0	1	991	0
chr2	36920702	36922408	T47D_Burge_Thompson.26390	0	.	36920702	36922408	0	1	1706	0
chr2	36920714	36921541	ZR751_Thompson.21619	0	.	36920714	36921541	0	1	827	0
chr2	37405602	37407428	Rinn_00003636	0	+	37405602	37407428	0	2	552,306	0,1520
chr2	37405712	37406123	testes_Burge.47645	0	.	37405712	37406123	0	1	411	0
chr2	37422207	37423365	REMC_LuminalBreast.85794	0	.	37422207	37423365	0	1	1158	0
chr2	37422336	37422718	MeI_Garraway.15722	0	.	37422336	37422718	0	1	382	0
chr2	37455686	37464071	REMC_LuminalBreast.85735	0	-	37455686	37464071	0	2	1263,6828	0,1557
chr2	37458965	37459443	B_cells_Cheung.168154	0	.	37458965	37459443	0	1	478	0
chr2	37460128	37461765	REMC_MyoepithelialBreast.79586	0	.	37460128	37461765	0	1	1637	0
chr2	37464889	37465242	H1_polyA+.100785	0	.	37464889	37465242	0	1	353	0
chr2	37469364	37470209	REMC_LuminalBreast.85739	0	.	37469364	37470209	0	1	845	0
chr2	37472074	37472927	REMC_MyoepithelialBreast.79588	0	.	37472074	37472927	0	1	853	0
chr2	37607051	37617032	B_cells_Cheung.168155	0	-	37607051	37617032	0	3	367,98,187	0,6284,9794
chr2	37646734	37652453	B_Cells_Pritchard.2713237	0	.	37646734	37652453	0	1	5719	0
chr2	37654810	37655322	B_cells_Cheung.168180	0	.	37654810	37655322	0	1	512	0
chr2	37657603	37658687	B_Cells_Pritchard.2713221	0	.	37657603	37658687	0	1	1084	0
chr2	37665594	37666484	B_cells_Cheung.168189	0	.	37665594	37666484	0	1	890	0
chr2	37665603	37666595	B_Cells_Pritchard.2713235	0	.	37665603	37666595	0	1	992	0
chr2	37680542	37685381	Rinn_00003638	0	+	37680542	37685381	0	2	467,427	0,4412
chr2	37680543	37693860	CD4_Plagnol_activated.58130	0	+	37680543	37693860	0	4	466,917,138,1041	0,4412,5339,12276
chr2	37680546	37681626	REMC_LuminalBreast.85741	0	.	37680546	37681626	0	1	1080	0
chr2	37680567	37693077	Rinn_00003640	0	+	37680567	37693077	0	2	442,259	0,12251
chr2	37680567	37685942	Rinn_00003639	0	+	37680567	37685942	0	2	442,61	0,5314
chr2	37680568	37682967	CD4_Snyder.63369	0	.	37680568	37682967	0	1	2399	0
chr2	37680569	37681020	CD4_Plagnol_resting.56479	0	.	37680569	37681020	0	1	451	0
chr2	37684108	37685992	CD4_Plagnol_resting.56481	0	.	37684108	37685992	0	1	1884	0
chr2	37684160	37687943	B_Cells_Pritchard.2713267	0	.	37684160	37687943	0	1	3783	0
chr2	37684775	37685992	prostate_carcinoma.86658	0	.	37684775	37685992	0	1	1217	0
chr2	37684823	37686020	CD4_Plagnol_activated.58131	0	.	37684823	37686020	0	1	1197	0
chr2	37685076	37688010	B_cells_Cheung.168161	0	.	37685076	37688010	0	1	2934	0
chr2	37688069	37690995	B_Cells_Pritchard.2713263	0	.	37688069	37690995	0	1	2926	0
chr2	37690354	37691741	B_cells_Cheung.168200	0	.	37690354	37691741	0	1	1387	0
chr2	37694362	37697253	B_Cells_Pritchard.2713271	0	.	37694362	37697253	0	1	2891	0
chr2	37694366	37695977	REMC_MyoepithelialBreast.79595	0	.	37694366	37695977	0	1	1611	0
chr2	37696931	37698012	REMC_LuminalBreast.85743	0	.	37696931	37698012	0	1	1081	0
chr2	37706047	37707582	REMC_MyoepithelialBreast.79599	0	.	37706047	37707582	0	1	1535	0
chr2	37714602	37715832	CD4_Plagnol_resting.56488	0	.	37714602	37715832	0	1	1230	0
chr2	37714712	37716455	melanoma_Garraway_short_term_cultures.60552	0	.	37714712	37716455	0	1	1743	0
chr2	37715038	37716444	CD4_Plagnol_activated.58139	0	.	37715038	37716444	0	1	1406	0
chr2	37715159	37716488	REMC_BreastStem.43677	0	.	37715159	37716488	0	1	1329	0
chr2	37841022	37842332	B_cells_Cheung.168429	0	.	37841022	37842332	0	1	1310	0
chr2	37841103	37842298	B_Cells_Pritchard.2713615	0	.	37841103	37842298	0	1	1195	0
chr2	37843195	37843534	liver_polyA+.115108	0	.	37843195	37843534	0	1	339	0
chr2	37843204	37843534	kidney_Gilad.74283	0	.	37843204	37843534	0	1	330	0
chr2	37865712	37867248	B_Cells_Pritchard.2713721	0	.	37865712	37867248	0	1	1536	0
chr2	37865869	37866982	REMC_BreastStem.43685	0	.	37865869	37866982	0	1	1113	0
chr2	37866491	37867051	B_cells_Cheung.168441	0	.	37866491	37867051	0	1	560	0
chr2	37871146	37872756	B_cells_Cheung.168446	0	.	37871146	37872756	0	1	1610	0
chr2	37906893	37910045	HIT000013801	0	+	37906893	37910045	0	3	1632,106,151	0,2686,3001
chr2	37909526	37909905	B_cells_Cheung.168460	0	.	37909526	37909905	0	1	379	0
chr2	37960380	37962433	B_Cells_Pritchard.2714023	0	.	37960380	37962433	0	1	2053	0
chr2	37965600	37966494	B_Cells_Pritchard.2714037	0	.	37965600	37966494	0	1	894	0
chr2	37966600	37967210	B_Cells_Pritchard.2714039	0	.	37966600	37967210	0	1	610	0
chr2	37966759	37967170	B_cells_Cheung.168473	0	.	37966759	37967170	0	1	411	0
chr2	37969790	37970407	B_cells_Cheung.168476	0	.	37969790	37970407	0	1	617	0
chr2	37969796	37977346	B_Cells_Pritchard.2714047	0	-	37969796	37977346	0	2	3625,933	0,6617
chr2	37971439	37972789	B_cells_Cheung.168479	0	.	37971439	37972789	0	1	1350	0
chr2	37971456	37972091	A549_Myers.76550	0	.	37971456	37972091	0	1	635	0
chr2	37973811	37974479	B_cells_Cheung.168481	0	.	37973811	37974479	0	1	668	0
chr2	37984944	37987200	B_Cells_Pritchard.2714089	0	.	37984944	37987200	0	1	2256	0
chr2	38201541	38202189	MCF10A_Thompson.19249	0	.	38201541	38202189	0	1	648	0
chr2	38202580	38204527	HIT000006971	0	+	38202580	38204527	0	1	1947	0
chr2	38210090	38211099	prostate_carcinoma.86775	0	.	38210090	38211099	0	1	1009	0
chr2	38212150	38213001	B_Cells_Pritchard.2714731	0	.	38212150	38213001	0	1	851	0
chr2	38215353	38215665	REMC_LuminalBreast.85883	0	.	38215353	38215665	0	1	312	0
chr2	38222274	38225692	B_cells_Cheung.168588	0	.	38222274	38225692	0	4	601,419,478,449	0,1018,2421,2969
chr2	38226919	38227969	prostate_normal.52408	0	.	38226919	38227969	0	1	1050	0
chr2	38233891	38236455	B_Cells_Pritchard.2714761	0	.	38233891	38236455	0	1	2564	0
chr2	38234041	38237029	prostate_carcinoma.86777	0	.	38234041	38237029	0	1	2988	0
chr2	38234189	38235996	MCF7_Burge_Thompson.28598	0	.	38234189	38235996	0	1	1807	0
chr2	38234413	38235771	REMC_MyoepithelialBreast.79751	0	.	38234413	38235771	0	1	1358	0
chr2	38234664	38235662	MDAMB468_Thompson.22071	0	.	38234664	38235662	0	1	998	0
chr2	38234817	38235565	REMC_BreastStem.43772	0	.	38234817	38235565	0	1	748	0
chr2	38234861	38235673	prostate_normal.52410	0	.	38234861	38235673	0	1	812	0
chr2	38242668	38262487	prostate_carcinoma.86786	0	-	38242668	38262487	0	2	64,4331	0,15488
chr2	38245418	38246000	B_cells_Cheung.168596	0	.	38245418	38246000	0	1	582	0
chr2	38254318	38264151	REMC_LuminalBreast.85892	0	.	38254318	38264151	0	1	9833	0
chr2	38257701	38262487	prostate_carcinoma.86787	0	.	38257701	38262487	0	1	4786	0
chr2	38259393	38260377	B_cells_Cheung.168605	0	.	38259393	38260377	0	1	984	0
chr2	38260661	38261576	REMC_MyoepithelialBreast.79753	0	.	38260661	38261576	0	1	915	0
chr2	38260752	38262468	prostate_normal.52416	0	.	38260752	38262468	0	1	1716	0
chr2	38260815	38262489	B_cells_Cheung.168606	0	.	38260815	38262489	0	1	1674	0
chr2	38260901	38262467	B_Cells_Pritchard.2714869	0	.	38260901	38262467	0	1	1566	0
chr2	38260933	38261376	MCF7_Burge_Thompson.28600	0	.	38260933	38261376	0	1	443	0
chr2	38270752	38273846	MCF10A_Thompson.19253	0	.	38270752	38273846	0	1	3094	0
chr2	38271381	38272368	MeWo_Garraway.32610	0	.	38271381	38272368	0	1	987	0
chr2	38271531	38272527	prostate_carcinoma.86745	0	.	38271531	38272527	0	1	996	0
chr2	38271712	38272227	B_cells_Cheung.168612	0	.	38271712	38272227	0	1	515	0
chr2	38271865	38272429	prostate_normal.52418	0	.	38271865	38272429	0	1	564	0
chr2	38273239	38280136	REMC_LuminalBreast.85895	0	.	38273239	38280136	0	2	3418,2402	0,4495
chr2	38279240	38280039	B_cells_Cheung.168619	0	.	38279240	38280039	0	1	799	0
chr2	38279362	38280316	MCF10A_Thompson.19257	0	.	38279362	38280316	0	1	954	0
chr2	38279749	38281784	prostate_carcinoma.86748	0	.	38279749	38281784	0	1	2035	0
chr2	38280312	38280734	B_cells_Cheung.168620	0	.	38280312	38280734	0	1	422	0
chr2	38301935	38307351	REMC_LuminalBreast.85901	0	.	38301935	38307351	0	1	5416	0
chr2	38316764	38318375	REMC_LuminalBreast.85906	0	.	38316764	38318375	0	1	1611	0
chr2	38463634	38466115	REMC_LuminalBreast.85814	0	.	38463634	38466115	0	1	2481	0
chr2	38466353	38466885	REMC_LuminalBreast.85815	0	.	38466353	38466885	0	1	532	0
chr2	38472146	38472607	B_Cells_Pritchard.2715401	0	.	38472146	38472607	0	1	461	0
chr2	38475147	38475571	REMC_LuminalBreast.85816	0	.	38475147	38475571	0	1	424	0
chr2	38486685	38488574	prostate_carcinoma.86794	0	.	38486685	38488574	0	1	1889	0
chr2	38526394	38528421	prostate_carcinoma.86798	0	.	38526394	38528421	0	1	2027	0
chr2	38526914	38528180	prostate_normal.52435	0	.	38526914	38528180	0	1	1266	0
chr2	38528733	38530527	prostate_carcinoma.86799	0	.	38528733	38530527	0	1	1794	0
chr2	38529267	38530163	prostate_normal.52436	0	.	38529267	38530163	0	1	896	0
chr2	38530800	38531875	prostate_carcinoma.86900	0	.	38530800	38531875	0	1	1075	0
chr2	38532075	38532665	MeI_Garraway.15646	0	.	38532075	38532665	0	1	590	0
chr2	38532956	38535904	prostate_carcinoma.86901	0	.	38532956	38535904	0	1	2948	0
chr2	38533628	38535115	prostate_normal.52439	0	.	38533628	38535115	0	1	1487	0
chr2	38536208	38537501	prostate_carcinoma.86905	0	.	38536208	38537501	0	1	1293	0
chr2	38537858	38538794	prostate_normal.52441	0	.	38537858	38538794	0	1	936	0
chr2	38537887	38539735	prostate_carcinoma.86906	0	.	38537887	38539735	0	1	1848	0
chr2	38597940	38599279	REMC_LuminalBreast.85835	0	.	38597940	38599279	0	1	1339	0
chr2	38603202	38604902	REMC_LuminalBreast.85839	0	.	38603202	38604902	0	1	1700	0
chr2	38603393	38604796	prostate_carcinoma.86914	0	.	38603393	38604796	0	1	1403	0
chr2	38619487	38640445	REMC_LuminalBreast.85848	0	.	38619487	38640445	0	1	20958	0
chr2	38622173	38640445	REMC_LuminalBreast.85849	0	-	38622173	38640445	0	2	48,18054	0,218
chr2	38622535	38623936	REMC_MyoepithelialBreast.79764	0	.	38622535	38623936	0	1	1401	0
chr2	38623574	38624044	CD4_Plagnol_resting.56524	0	.	38623574	38624044	0	1	470	0
chr2	38624382	38628972	REMC_MyoepithelialBreast.79765	0	.	38624382	38628972	0	1	4590	0
chr2	38625174	38629324	H1_polyA+.100889	0	.	38625174	38629324	0	1	4150	0
chr2	38625898	38631040	B_cells_Cheung.168674	0	.	38625898	38631040	0	1	5142	0
chr2	38626834	38627897	B_Cells_Pritchard.2715817	0	.	38626834	38627897	0	1	1063	0
chr2	38627139	38628954	melanoma_Garraway_short_term_cultures.60589	0	.	38627139	38628954	0	1	1815	0
chr2	38627184	38627974	HepG2_Caltech_ENCODE.32969	0	.	38627184	38627974	0	1	790	0
chr2	38627210	38627824	REMC_BreastStem.43745	0	.	38627210	38627824	0	1	614	0
chr2	38728534	38730147	REMC_LuminalBreast.85866	0	.	38728534	38730147	0	1	1613	0
chr2	38730409	38732072	REMC_LuminalBreast.85867	0	.	38730409	38732072	0	1	1663	0
chr2	38731241	38731872	REMC_MyoepithelialBreast.79780	0	.	38731241	38731872	0	1	631	0
chr2	38863933	38865702	CD4_Plagnol_resting.56575	0	.	38863933	38865702	0	1	1769	0
chr2	38864187	38865568	REMC_LuminalBreast.85909	0	.	38864187	38865568	0	1	1381	0
chr2	38864230	38865551	MDAMB468_Thompson.22013	0	.	38864230	38865551	0	1	1321	0
chr2	38864264	38865642	CD4_Plagnol_activated.58180	0	.	38864264	38865642	0	1	1378	0
chr2	38864497	38865407	T47D_Burge_Thompson.26466	0	.	38864497	38865407	0	1	910	0
chr2	38864504	38865597	brain_AmbionMAQC.39997	0	.	38864504	38865597	0	1	1093	0
chr2	38864504	38865530	MCF10A_Thompson.19146	0	.	38864504	38865530	0	1	1026	0
chr2	38864524	38865537	ZR751_Thompson.21659	0	.	38864524	38865537	0	1	1013	0
chr2	38865031	38865586	HeLa_polyA+_Chen.32006	0	.	38865031	38865586	0	1	555	0
chr2	38865057	38865629	melanoma_Garraway_short_term_cultures.60619	0	.	38865057	38865629	0	1	572	0
chr2	38865066	38865621	MeWo_Garraway.32620	0	.	38865066	38865621	0	1	555	0
chr2	38865067	38865643	lymph_node_Burge.45124	0	.	38865067	38865643	0	1	576	0
chr2	38865072	38865608	prostate_normal.52466	0	.	38865072	38865608	0	1	536	0
chr2	38865082	38865521	BT474_Burge_Thompson.31423	0	.	38865082	38865521	0	1	439	0
chr2	39630206	39631656	B_cells_Cheung.168964	0	.	39630206	39631656	0	1	1450	0
chr2	39665991	39666554	HepG2_Caltech_ENCODE.33048	0	.	39665991	39666554	0	1	563	0
chr2	39679950	39681500	B_Cells_Pritchard.2718615	0	.	39679950	39681500	0	1	1550	0
chr2	39680018	39681587	BT474_Burge_Thompson.31445	0	.	39680018	39681587	0	1	1569	0
chr2	39680024	39681554	ZR751_Thompson.21682	0	.	39680024	39681554	0	1	1530	0
chr2	39805289	39808173	prostate_carcinoma.87085	0	.	39805289	39808173	0	1	2884	0
chr2	39806590	39807849	REMC_MyoepithelialBreast.79914	0	.	39806590	39807849	0	1	1259	0
chr2	41135644	41163670	HIT000012915	0	+	41135644	41163670	0	3	256,111,1496	0,4736,26530
chr2	41245097	41245923	prostate_carcinoma.87018	0	.	41245097	41245923	0	1	826	0
chr2	41459901	41460309	K562.39993	0	.	41459901	41460309	0	1	408	0
chr2	41495286	41495792	A549_Myers.76675	0	.	41495286	41495792	0	1	506	0
chr2	41950682	41951002	A549_Myers.76682	0	.	41950682	41951002	0	1	320	0
chr2	41957482	41959352	HeLa_polyA+_Chen.32040	0	.	41957482	41959352	0	1	1870	0
chr2	41958216	41959458	HeLa_polyA-_Chen.16912	0	.	41958216	41959458	0	1	1242	0
chr2	41959813	41960279	HeLa_polyA+_Chen.32041	0	.	41959813	41960279	0	1	466	0
chr2	42013829	42014287	A549_Myers.76687	0	.	42013829	42014287	0	1	458	0
chr2	42047347	42048136	A549_Myers.76691	0	.	42047347	42048136	0	1	789	0
chr2	42073241	42073622	A549_Myers.76694	0	.	42073241	42073622	0	1	381	0
chr2	42140637	42141466	REMC_BreastStem.43808	0	.	42140637	42141466	0	1	829	0
chr2	42141902	42143852	REMC_BreastStem.43809	0	.	42141902	42143852	0	1	1950	0
chr2	42144099	42146245	REMC_BreastStem.43810	0	.	42144099	42146245	0	1	2146	0
chr2	42149311	42149826	B_Cells_Pritchard.2723695	0	.	42149311	42149826	0	1	515	0
chr2	42149426	42150193	A549_Myers.76704	0	.	42149426	42150193	0	1	767	0
chr2	42149451	42150258	REMC_BreastStem.43812	0	.	42149451	42150258	0	1	807	0
chr2	42153445	42153811	A549_Myers.76706	0	.	42153445	42153811	0	1	366	0
chr2	42154799	42159263	REMC_BreastStem.43805	0	.	42154799	42159263	0	1	4464	0
chr2	42177822	42191283	B_Cells_Pritchard.2723887	0	+	42177822	42191283	0	2	872,4946	0,8515
chr2	42181837	42183267	CD4_Snyder.63530	0	.	42181837	42183267	0	1	1430	0
chr2	42181962	42183274	B_Cells_Pritchard.2723915	0	+	42181962	42183274	0	1	1312	0
chr2	42182010	42183259	B_cells_Cheung.169077	0	.	42182010	42183259	0	1	1249	0
chr2	42182026	42182398	A549_Myers.76711	0	.	42182026	42182398	0	1	372	0
chr2	42186854	42188615	B_cells_Cheung.169079	0	.	42186854	42188615	0	1	1761	0
chr2	42191393	42192045	B_Cells_Pritchard.2723815	0	.	42191393	42192045	0	1	652	0
chr2	42191556	42191927	B_cells_Cheung.169081	0	.	42191556	42191927	0	1	371	0
chr2	42208589	42209029	B_Cells_Pritchard.2724003	0	+	42208589	42209029	0	1	440	0
chr2	42213348	42214161	A549_Myers.76713	0	.	42213348	42214161	0	1	813	0
chr2	42234929	42235412	B_cells_Cheung.169095	0	.	42234929	42235412	0	1	483	0
chr2	42235911	42236750	B_cells_Cheung.169096	0	.	42235911	42236750	0	1	839	0
chr2	42451303	42455753	H1_polyA+.101756	0	.	42451303	42455753	0	1	4450	0
chr2	42452042	42454460	REMC_LuminalBreast.86119	0	.	42452042	42454460	0	1	2418	0
chr2	42455892	42457234	H1_polyA+.101757	0	.	42455892	42457234	0	1	1342	0
chr2	42456314	42457002	REMC_LuminalBreast.86121	0	.	42456314	42457002	0	1	688	0
chr2	42460784	42463430	H1_polyA+.101760	0	.	42460784	42463430	0	1	2646	0
chr2	42463573	42466542	H1_polyA+.101761	0	.	42463573	42466542	0	1	2969	0
chr2	42472599	42474493	H1_polyA+.101764	0	.	42472599	42474493	0	1	1894	0
chr2	42482018	42486272	H1_polyA+.101767	0	.	42482018	42486272	0	1	4254	0
chr2	42487491	42490299	H1_polyA+.101769	0	.	42487491	42490299	0	1	2808	0
chr2	42503740	42504182	H1_rRNA-depleted_UCSD_REMC.76171	0	.	42503740	42504182	0	1	442	0
chr2	42505898	42506203	B_cells_Cheung.169109	0	.	42505898	42506203	0	1	305	0
chr2	42513642	42514373	H9_polyA-_Chen.12877	0	.	42513642	42514373	0	1	731	0
chr2	42513738	42514416	HepG2_Caltech_ENCODE.33084	0	.	42513738	42514416	0	1	678	0
chr2	43159598	43160508	prostate_carcinoma.87142	0	.	43159598	43160508	0	1	910	0
chr2	43159827	43160662	MCF7_Burge_Thompson.28662	0	.	43159827	43160662	0	1	835	0
chr2	43160957	43161644	MCF7_Burge_Thompson.28663	0	.	43160957	43161644	0	1	687	0
chr2	43160967	43164697	BT20_Thompson.19780	0	.	43160967	43164697	0	1	3730	0
chr2	43161345	43161668	A549_Myers.76818	0	.	43161345	43161668	0	1	323	0
chr2	43162041	43164647	MCF7_Burge_Thompson.28664	0	.	43162041	43164647	0	1	2606	0
chr2	43163056	43164668	prostate_carcinoma.87139	0	.	43163056	43164668	0	1	1612	0
chr2	43163213	43163552	A549_Myers.76820	0	.	43163213	43163552	0	1	339	0
chr2	43175088	43176552	prostate_carcinoma.87148	0	.	43175088	43176552	0	1	1464	0
chr2	43182652	43182969	A549_Myers.76824	0	.	43182652	43182969	0	1	317	0
chr2	43187690	43188635	B_Cells_Pritchard.2727375	0	.	43187690	43188635	0	1	945	0
chr2	43204568	43204935	A549_Myers.76826	0	.	43204568	43204935	0	1	367	0
chr2	43208902	43209287	A549_Myers.76832	0	.	43208902	43209287	0	1	385	0
chr2	43208984	43302448	pHIT000073271	0	+	43208984	43302448	0	5	121,88,125,116,18	0,26463,91494,92911,93446
chr2	43210994	43211442	A549_Myers.76833	0	.	43210994	43211442	0	1	448	0
chr2	43211638	43212454	A549_Myers.76834	0	.	43211638	43212454	0	1	816	0
chr2	43215040	43215424	A549_Myers.76837	0	.	43215040	43215424	0	1	384	0
chr2	43229866	43230881	H1_polyA+.101112	0	.	43229866	43230881	0	1	1015	0
chr2	43230013	43231343	REMC_LuminalBreast.86174	0	.	43230013	43231343	0	1	1330	0
chr2	43230156	43231326	prostate_carcinoma.87154	0	.	43230156	43231326	0	1	1170	0
chr2	43230226	43230985	HeLa_polyA+_Chen.32063	0	.	43230226	43230985	0	1	759	0
chr2	43230252	43230930	prostate_normal.52604	0	.	43230252	43230930	0	1	678	0
chr2	43230400	43230753	B_Cells_Pritchard.2727523	0	.	43230400	43230753	0	1	353	0
chr2	43230642	43231422	MIP101.60611	0	.	43230642	43231422	0	1	780	0
chr2	43230888	43231363	B_Cells_Pritchard.2727525	0	.	43230888	43231363	0	1	475	0
chr2	43232735	43237088	prostate_carcinoma.87155	0	.	43232735	43237088	0	1	4353	0
chr2	43233790	43234136	A549_Myers.76842	0	.	43233790	43234136	0	1	346	0
chr2	43237358	43239492	A549_Myers.76845	0	-	43237358	43239492	0	2	78,245	0,1889
chr2	43239036	43239492	A549_Myers.76846	0	.	43239036	43239492	0	1	456	0
chr2	43242112	43242828	prostate_carcinoma.87156	0	.	43242112	43242828	0	1	716	0
chr2	43242966	43258145	prostate_carcinoma.87157	0	-	43242966	43258145	0	2	380,68	0,15111
chr2	43246402	43246779	B_Cells_Pritchard.2727587	0	.	43246402	43246779	0	1	377	0
chr2	43248574	43249341	REMC_MyoepithelialBreast.80040	0	.	43248574	43249341	0	1	767	0
chr2	43249262	43251295	REMC_LuminalBreast.86176	0	.	43249262	43251295	0	1	2033	0
chr2	43249393	43250527	prostate_carcinoma.87159	0	.	43249393	43250527	0	1	1134	0
chr2	43249690	43250197	A549_Myers.76854	0	.	43249690	43250197	0	1	507	0
chr2	43249766	43255856	B_Cells_Pritchard.2727605	0	+	43249766	43255856	0	2	2991,341	0,5749
chr2	43251303	43252174	prostate_carcinoma.87160	0	.	43251303	43252174	0	1	871	0
chr2	43251789	43252125	A549_Myers.76858	0	.	43251789	43252125	0	1	336	0
chr2	43257608	43259310	prostate_carcinoma.87158	0	.	43257608	43259310	0	1	1702	0
chr2	43258362	43258967	B_Cells_Pritchard.2727633	0	.	43258362	43258967	0	1	605	0
chr2	43260944	43262496	B_Cells_Pritchard.2727645	0	.	43260944	43262496	0	1	1552	0
chr2	43271054	43271494	B_Cells_Pritchard.2727681	0	.	43271054	43271494	0	1	440	0
chr2	43271999	43273069	REMC_LuminalBreast.86194	0	.	43271999	43273069	0	1	1070	0
chr2	43272065	43272967	B_Cells_Pritchard.2727685	0	.	43272065	43272967	0	1	902	0
chr2	43272083	43272468	A549_Myers.76864	0	.	43272083	43272468	0	1	385	0
chr2	43273264	43274212	REMC_MyoepithelialBreast.80041	0	.	43273264	43274212	0	1	948	0
chr2	43273393	43274376	A549_Myers.76865	0	.	43273393	43274376	0	1	983	0
chr2	43273888	43274328	B_Cells_Pritchard.2727689	0	.	43273888	43274328	0	1	440	0
chr2	43274450	43275933	REMC_LuminalBreast.86195	0	.	43274450	43275933	0	1	1483	0
chr2	43274885	43276233	B_cells_Cheung.169245	0	.	43274885	43276233	0	1	1348	0
chr2	43275869	43276224	prostate_carcinoma.87167	0	.	43275869	43276224	0	1	355	0
chr2	43275903	43276220	A549_Myers.76868	0	.	43275903	43276220	0	1	317	0
chr2	43276034	43276896	REMC_LuminalBreast.86196	0	.	43276034	43276896	0	1	862	0
chr2	43278832	43280194	REMC_MyoepithelialBreast.80043	0	.	43278832	43280194	0	1	1362	0
chr2	43279114	43279525	A549_Myers.76870	0	.	43279114	43279525	0	1	411	0
chr2	43279942	43280972	B_Cells_Pritchard.2727707	0	.	43279942	43280972	0	1	1030	0
chr2	43281293	43282434	REMC_BreastStem.43845	0	.	43281293	43282434	0	1	1141	0
chr2	43281308	43282313	REMC_MyoepithelialBreast.80045	0	.	43281308	43282313	0	1	1005	0
chr2	43281365	43282868	REMC_LuminalBreast.86198	0	.	43281365	43282868	0	1	1503	0
chr2	43283581	43285250	REMC_MyoepithelialBreast.80047	0	.	43283581	43285250	0	1	1669	0
chr2	43283584	43285182	REMC_BreastStem.43847	0	.	43283584	43285182	0	1	1598	0
chr2	43283837	43287698	REMC_LuminalBreast.86200	0	.	43283837	43287698	0	1	3861	0
chr2	43284039	43285055	B_Cells_Pritchard.2727717	0	.	43284039	43285055	0	1	1016	0
chr2	43284295	43284727	B_cells_Cheung.169249	0	.	43284295	43284727	0	1	432	0
chr2	43287741	43288859	B_Cells_Pritchard.2727729	0	.	43287741	43288859	0	1	1118	0
chr2	43287746	43288483	REMC_MyoepithelialBreast.80049	0	.	43287746	43288483	0	1	737	0
chr2	43287920	43288952	REMC_BreastStem.43849	0	.	43287920	43288952	0	1	1032	0
chr2	43287929	43291370	REMC_LuminalBreast.86201	0	.	43287929	43291370	0	1	3441	0
chr2	43287929	43288835	B_cells_Cheung.169252	0	.	43287929	43288835	0	1	906	0
chr2	43289305	43291722	REMC_MyoepithelialBreast.80050	0	.	43289305	43291722	0	1	2417	0
chr2	43289786	43292150	REMC_BreastStem.43850	0	.	43289786	43292150	0	1	2364	0
chr2	43290724	43291794	B_cells_Cheung.169254	0	.	43290724	43291794	0	1	1070	0
chr2	43290755	43291689	MIP101.60616	0	.	43290755	43291689	0	1	934	0
chr2	43291522	43292735	REMC_LuminalBreast.86202	0	.	43291522	43292735	0	1	1213	0
chr2	43291793	43294679	REMC_MyoepithelialBreast.80051	0	.	43291793	43294679	0	1	2886	0
chr2	43292881	43293595	REMC_LuminalBreast.86203	0	.	43292881	43293595	0	1	714	0
chr2	43293754	43294932	REMC_LuminalBreast.86204	0	.	43293754	43294932	0	1	1178	0
chr2	43294890	43295988	H1_polyA+.101115	0	.	43294890	43295988	0	1	1098	0
chr2	43294940	43295651	B_cells_Cheung.169258	0	.	43294940	43295651	0	1	711	0
chr2	43298280	43302011	pHIT000099565	0	+	43298280	43302011	0	4	18,81,202,116	0,994,2121,3615
chr2	43298280	43302448	pHIT000099569	0	+	43298280	43302448	0	5	18,81,202,116,18	0,994,2121,3615,4150
chr2	43298908	43300312	REMC_LuminalBreast.86205	0	.	43298908	43300312	0	1	1404	0
chr2	43299292	43302448	pHIT000004111	0	+	43299292	43302448	0	4	63,202,116,18	0,1109,2603,3138
chr2	43299461	43300267	CD4_Plagnol_resting.56720	0	.	43299461	43300267	0	1	806	0
chr2	43299502	43300978	prostate_carcinoma.87445	0	.	43299502	43300978	0	1	1476	0
chr2	43299529	43300333	H1_polyA+.101116	0	.	43299529	43300333	0	1	804	0
chr2	43299537	43300289	CD4_Snyder.63684	0	.	43299537	43300289	0	1	752	0
chr2	43299583	43299958	BT474_Burge_Thompson.31461	0	.	43299583	43299958	0	1	375	0
chr2	43299588	43300288	CD4_Plagnol_activated.58313	0	.	43299588	43300288	0	1	700	0
chr2	43299626	43300062	breast_Burge.36759	0	.	43299626	43300062	0	1	436	0
chr2	43299677	43300009	adipose_Raymond.58534	0	.	43299677	43300009	0	1	332	0
chr2	43299681	43299994	spleen_Raymond.165520	0	.	43299681	43299994	0	1	313	0
chr2	43299721	43300153	lung_Raymond.75847	0	.	43299721	43300153	0	1	432	0
chr2	43299744	43300180	colon_Raymond.107011	0	.	43299744	43300180	0	1	436	0
chr2	43961087	43962097	kidney_Gilad.74735	0	.	43961087	43962097	0	1	1010	0
chr2	43964532	43965687	REMC_LuminalBreast.86210	0	.	43964532	43965687	0	1	1155	0
chr2	44167721	44168162	A549_Myers.76944	0	.	44167721	44168162	0	1	441	0
chr2	44865124	44866586	B_Cells_Pritchard.2732021	0	.	44865124	44866586	0	1	1462	0
chr2	44868189	44872756	B_Cells_Pritchard.2732025	0	+	44868189	44872756	0	2	3582,135	0,4432
chr2	44870443	44874452	B_cells_Cheung.169828	0	.	44870443	44874452	0	1	4009	0
chr2	44880349	44884525	B_Cells_Pritchard.2732049	0	.	44880349	44884525	0	1	4176	0
chr2	44880538	44883686	H1_polyA+.101377	0	-	44880538	44883686	0	2	2499,128	0,3020
chr2	44880538	44883342	H1_polyA+.101376	0	.	44880538	44883342	0	1	2804	0
chr2	44880646	44883089	B_cells_Cheung.169836	0	.	44880646	44883089	0	1	2443	0
chr2	44885146	44887216	B_Cells_Pritchard.2732053	0	.	44885146	44887216	0	1	2070	0
chr2	44897516	44899548	B_Cells_Pritchard.2732201	0	.	44897516	44899548	0	1	2032	0
chr2	44900983	44904703	B_Cells_Pritchard.2732545	0	+	44900983	44904703	0	1	3720	0
chr2	44900996	44901742	B_cells_Cheung.169844	0	.	44900996	44901742	0	1	746	0
chr2	44905425	44907568	B_Cells_Pritchard.2732205	0	.	44905425	44907568	0	1	2143	0
chr2	44905445	44907665	B_cells_Cheung.169847	0	.	44905445	44907665	0	1	2220	0
chr2	44907766	44913388	B_Cells_Pritchard.2732467	0	-	44907766	44913388	0	2	259,3645	0,1977
chr2	44908980	44914868	B_cells_Cheung.169849	0	.	44908980	44914868	0	1	5888	0
chr2	44913589	44914757	B_Cells_Pritchard.2732371	0	.	44913589	44914757	0	1	1168	0
chr2	44914950	44918088	B_cells_Cheung.169850	0	.	44914950	44918088	0	1	3138	0
chr2	44914951	44918580	B_Cells_Pritchard.2732375	0	+	44914951	44918580	0	1	3629	0
chr2	44928883	44929307	B_cells_Cheung.169880	0	.	44928883	44929307	0	1	424	0
chr2	44989512	44989943	B_cells_Cheung.169903	0	.	44989512	44989943	0	1	431	0
chr2	45000674	45004199	MDAMB468_Thompson.22087	0	.	45000674	45004199	0	1	3525	0
chr2	45000781	45005152	B_Cells_Pritchard.2732793	0	+	45000781	45005152	0	1	4371	0
chr2	45000835	45003110	HIT000046705	0	-	45000835	45003110	0	1	2275	0
chr2	45000922	45019014	H1_polyA+.101380	0	+	45000922	45019014	0	3	533,28,6902	0,1959,11190
chr2	45000922	45004257	H1_polyA+.101381	0	.	45000922	45004257	0	1	3335	0
chr2	45001102	45004361	NEC_from_H9.66961	0	.	45001102	45004361	0	1	3259	0
chr2	45001718	45004166	XR_079462	0	-	45001718	45004166	0	1	2448	0
chr2	45001723	45004215	T47D_Burge_Thompson.26520	0	.	45001723	45004215	0	1	2492	0
chr2	45002172	45003083	MDAMB231_Thompson.19771	0	.	45002172	45003083	0	1	911	0
chr2	45002294	45003288	B_cells_Cheung.169906	0	.	45002294	45003288	0	1	994	0
chr2	45002315	45002803	A549_Myers.76981	0	.	45002315	45002803	0	1	488	0
chr2	45003988	45019842	Rinn_00003268	0	-	45003988	45019842	0	2	234,378	0,15476
chr2	45003989	45019842	ENST00000437916	0	-	45003989	45019842	0	2	233,377	0,15476
chr2	45008596	45016556	NEC_from_H9.66968	0	.	45008596	45016556	0	1	7960	0
chr2	45009096	45009712	MDAMB468_Thompson.22088	0	.	45009096	45009712	0	1	616	0
chr2	45009157	45009799	A549_Myers.76987	0	.	45009157	45009799	0	1	642	0
chr2	45009172	45010225	B_Cells_Pritchard.2732791	0	.	45009172	45010225	0	1	1053	0
chr2	45009490	45019861	H1_polyA+.101378	0	-	45009490	45019861	0	2	1400,3939	0,6432
chr2	45010070	45010755	T47D_Burge_Thompson.26521	0	.	45010070	45010755	0	1	685	0
chr2	45010145	45010611	B_cells_Cheung.169910	0	.	45010145	45010611	0	1	466	0
chr2	45010194	45011230	MDAMB231_Thompson.19775	0	.	45010194	45011230	0	1	1036	0
chr2	45010427	45011547	MDAMB468_Thompson.22089	0	.	45010427	45011547	0	1	1120	0
chr2	45011714	45019893	MDAMB468_Thompson.22090	0	-	45011714	45019893	0	2	4367,428	0,7751
chr2	45011721	45020648	B_Cells_Pritchard.2732937	0	-	45011721	45020648	0	1	8927	0
chr2	45011848	45015850	H1_polyA+.101382	0	.	45011848	45015850	0	1	4002	0
chr2	45014267	45015177	A549_Myers.76989	0	.	45014267	45015177	0	1	910	0
chr2	45015304	45019906	A549_Myers.76982	0	.	45015304	45019906	0	1	4602	0
chr2	45015683	45017778	T47D_Burge_Thompson.26523	0	.	45015683	45017778	0	1	2095	0
chr2	45016608	45017468	MDAMB468_Thompson.22092	0	.	45016608	45017468	0	1	860	0
chr2	45017539	45019893	MDAMB468_Thompson.22091	0	.	45017539	45019893	0	1	2354	0
chr2	45017750	45019334	MDAMB231_Thompson.19777	0	.	45017750	45019334	0	1	1584	0
chr2	45018272	45018858	B_cells_Cheung.169914	0	.	45018272	45018858	0	1	586	0
chr2	45018379	45019274	BT20_Thompson.19800	0	.	45018379	45019274	0	1	895	0
chr2	45018562	45020757	HIT000090880	0	+	45018562	45020757	0	1	2195	0
chr2	45018631	45019669	NEC_from_H9.66964	0	.	45018631	45019669	0	1	1038	0
chr2	45018994	45019852	B_cells_Cheung.169915	0	.	45018994	45019852	0	1	858	0
chr2	45019463	45019897	T47D_Burge_Thompson.26524	0	.	45019463	45019897	0	1	434	0
chr2	45019726	45020043	NEC_from_H9.66965	0	.	45019726	45020043	0	1	317	0
chr2	45021225	45022137	Rinn_00003272	0	-	45021225	45022137	0	2	251,308	0,604
chr2	45021226	45022137	ENST00000456467	0	-	45021226	45022137	0	2	250,307	0,604
chr2	45029219	45030721	H1_polyA+.101388	0	.	45029219	45030721	0	1	1502	0
chr2	45029459	45045615	pHIT000099582	0	+	45029459	45045615	0	5	161,44,200,53,94	0,997,3820,13652,16062
chr2	45029737	45030474	B_cells_Cheung.169917	0	.	45029737	45030474	0	1	737	0
chr2	45029973	45030770	A549_Myers.76994	0	.	45029973	45030770	0	1	797	0
chr2	45030867	45032665	NEC_from_H9.66960	0	.	45030867	45032665	0	1	1798	0
chr2	45031811	45033150	A549_Myers.76995	0	.	45031811	45033150	0	1	1339	0
chr2	45033559	45034616	B_Cells_Pritchard.2732799	0	.	45033559	45034616	0	1	1057	0
chr2	45033787	45034611	NEC_from_H9.66967	0	.	45033787	45034611	0	1	824	0
chr2	45035305	45049401	Rinn_00002884	0	+	45035305	45049401	0	4	109,46,188,2342	0,2458,6398,11754
chr2	45035707	45036740	A549_Myers.76997	0	.	45035707	45036740	0	1	1033	0
chr2	45038772	45040620	NEC_from_H9.66970	0	-	45038772	45040620	0	2	457,217	0,1631
chr2	45038795	45039476	REMC_BreastStem.43909	0	.	45038795	45039476	0	1	681	0
chr2	45040455	45040806	A549_Myers.76998	0	.	45040455	45040806	0	1	351	0
chr2	45041708	45042985	H1_polyA+.101390	0	-	45041708	45042985	0	2	870,12	0,1265
chr2	45041898	45042361	B_Cells_Pritchard.2732835	0	.	45041898	45042361	0	1	463	0
chr2	45042878	45043778	B_Cells_Pritchard.2732841	0	.	45042878	45043778	0	1	900	0
chr2	45047567	45049065	NEC_from_H9.66973	0	.	45047567	45049065	0	1	1498	0
chr2	45047587	45049298	B_Cells_Pritchard.2732857	0	.	45047587	45049298	0	1	1711	0
chr2	45048159	45048977	B_cells_Cheung.169911	0	.	45048159	45048977	0	1	818	0
chr2	45048340	45049153	H1_polyA+.101391	0	.	45048340	45049153	0	1	813	0
chr2	45048517	45049405	HIT000302731	0	-	45048517	45049405	0	1	888	0
chr2	45048615	45049102	REMC_BreastStem.43907	0	.	45048615	45049102	0	1	487	0
chr2	45050389	45050955	B_cells_Cheung.169912	0	.	45050389	45050955	0	1	566	0
chr2	45050400	45050840	B_Cells_Pritchard.2732861	0	.	45050400	45050840	0	1	440	0
chr2	45093807	45095306	A549_Myers.77004	0	.	45093807	45095306	0	1	1499	0
chr2	45093845	45094497	MDAMB231_Thompson.19780	0	.	45093845	45094497	0	1	652	0
chr2	45093857	45094634	H1_polyA+.101395	0	.	45093857	45094634	0	1	777	0
chr2	45093859	45094595	prostate_normal.52692	0	.	45093859	45094595	0	1	736	0
chr2	45120071	45120380	H1_polyA+.101396	0	.	45120071	45120380	0	1	309	0
chr2	45130538	45130919	A549_Myers.77012	0	.	45130538	45130919	0	1	381	0
chr2	45241278	45242222	REMC_BreastStem.43915	0	.	45241278	45242222	0	1	944	0
chr2	45249167	45250028	prostate_carcinoma.87351	0	.	45249167	45250028	0	1	861	0
chr2	45249384	45250063	A549_Myers.77015	0	.	45249384	45250063	0	1	679	0
chr2	45250118	45251137	prostate_normal.52694	0	.	45250118	45251137	0	1	1019	0
chr2	45250127	45251075	A549_Myers.77016	0	.	45250127	45251075	0	1	948	0
chr2	45250143	45252539	prostate_carcinoma.87352	0	.	45250143	45252539	0	1	2396	0
chr2	45361341	45362717	prostate_carcinoma.87359	0	.	45361341	45362717	0	1	1376	0
chr2	45385672	45386035	A549_Myers.77031	0	.	45385672	45386035	0	1	363	0
chr2	45462074	45464659	REMC_MyoepithelialBreast.80309	0	.	45462074	45464659	0	1	2585	0
chr2	45465359	45467806	prostate_carcinoma.87374	0	.	45465359	45467806	0	1	2447	0
chr2	45466200	45467320	K562.40088	0	.	45466200	45467320	0	1	1120	0
chr2	45466622	45467236	prostate_normal.52698	0	.	45466622	45467236	0	1	614	0
chr2	45466625	45467303	melanoma_Garraway_short_term_cultures.60891	0	.	45466625	45467303	0	1	678	0
chr2	45466652	45467806	REMC_BreastStem.43917	0	.	45466652	45467806	0	1	1154	0
chr2	45466665	45467259	CD4_Plagnol_resting.56818	0	.	45466665	45467259	0	1	594	0
chr2	45466667	45467098	spleen_Raymond.165961	0	.	45466667	45467098	0	1	431	0
chr2	45719851	45720900	REMC_BreastStem.43919	0	.	45719851	45720900	0	1	1049	0
chr2	45723070	45724320	REMC_BreastStem.43920	0	.	45723070	45724320	0	1	1250	0
chr2	45724204	45724655	A549_Myers.77043	0	.	45724204	45724655	0	1	451	0
chr2	45728683	45730815	REMC_LuminalBreast.86551	0	.	45728683	45730815	0	1	2132	0
chr2	45729276	45730613	REMC_BreastStem.43922	0	.	45729276	45730613	0	1	1337	0
chr2	45729383	45731233	MCF7_Burge_Thompson.28703	0	.	45729383	45731233	0	1	1850	0
chr2	45729384	45731468	Rinn_00004240	0	-	45729384	45731468	0	2	642,874	0,1210
chr2	45729402	45730856	melanoma_Garraway_short_term_cultures.60894	0	.	45729402	45730856	0	1	1454	0
chr2	45729415	45731196	MIP101.60792	0	.	45729415	45731196	0	1	1781	0
chr2	45729855	45730866	HepG2_Caltech_ENCODE.33193	0	.	45729855	45730866	0	1	1011	0
chr2	45729911	45730315	liver_polyA+.115850	0	.	45729911	45730315	0	1	404	0
chr2	45730520	45731161	brain_AmbionMAQC.40130	0	.	45730520	45731161	0	1	641	0
chr2	46310776	46311172	A549_Myers.77111	0	.	46310776	46311172	0	1	396	0
chr2	46472945	46474890	K562.40159	0	.	46472945	46474890	0	1	1945	0
chr2	46473747	46474064	A549_Myers.77141	0	.	46473747	46474064	0	1	317	0
chr2	46474607	46504366	REMC_MyoepithelialBreast.80981	0	.	46474607	46504366	0	1	29759	0
chr2	46474607	46504366	REMC_MyoepithelialBreast.80980	0	+	46474607	46504366	0	3	11267,227,11723	0,15840,18036
chr2	46474609	46477049	REMC_LuminalBreast.86582	0	.	46474609	46477049	0	1	2440	0
chr2	46477061	46501796	REMC_BreastStem.44150	0	.	46477061	46501796	0	1	24735	0
chr2	46487763	46491817	K562.40164	0	.	46487763	46491817	0	2	2434,1297	0,2757
chr2	46489231	46489691	A549_Myers.77143	0	.	46489231	46489691	0	1	460	0
chr2	46489829	46490473	A549_Myers.77144	0	.	46489829	46490473	0	1	644	0
chr2	46492341	46493060	B_Cells_Pritchard.2737061	0	.	46492341	46493060	0	1	719	0
chr2	46499250	46500582	REMC_LuminalBreast.86587	0	.	46499250	46500582	0	1	1332	0
chr2	46708626	46738222	prostate_carcinoma.87549	0	-	46708626	46738222	0	2	23,11826	0,17770
chr2	46715164	46719312	B_Cells_Pritchard.2737539	0	+	46715164	46719312	0	2	2896,476	0,3672
chr2	46715178	46723608	REMC_MyoepithelialBreast.80480	0	.	46715178	46723608	0	1	8430	0
chr2	46715196	46718669	REMC_LuminalBreast.87057	0	.	46715196	46718669	0	1	3473	0
chr2	46715203	46718197	REMC_BreastStem.44077	0	.	46715203	46718197	0	1	2994	0
chr2	46715213	46718092	B_cells_Cheung.170124	0	.	46715213	46718092	0	1	2879	0
chr2	46715223	46718669	H1_polyA+.101529	0	.	46715223	46718669	0	1	3446	0
chr2	46719411	46721232	REMC_LuminalBreast.87059	0	.	46719411	46721232	0	1	1821	0
chr2	46720021	46721203	B_cells_Cheung.170128	0	.	46720021	46721203	0	1	1182	0
chr2	46720055	46721206	H1_polyA+.101531	0	.	46720055	46721206	0	1	1151	0
chr2	46725106	46727668	REMC_BreastStem.44082	0	.	46725106	46727668	0	1	2562	0
chr2	46725167	46725818	CD4_Snyder.64009	0	.	46725167	46725818	0	1	651	0
chr2	46725171	46726876	B_cells_Cheung.170132	0	.	46725171	46726876	0	1	1705	0
chr2	46725176	46731866	MIP101.60826	0	.	46725176	46731866	0	1	6690	0
chr2	46725177	46726013	prostate_normal.52766	0	.	46725177	46726013	0	1	836	0
chr2	46725181	46728432	B_Cells_Pritchard.2737533	0	.	46725181	46728432	0	1	3251	0
chr2	46726230	46732943	prostate_normal.52764	0	.	46726230	46732943	0	1	6713	0
chr2	46726941	46731589	B_cells_Cheung.170119	0	.	46726941	46731589	0	1	4648	0
chr2	46727071	46729835	HIT000044122	0	+	46727071	46729835	0	1	2764	0
chr2	46727628	46728455	CD4_Snyder.64014	0	.	46727628	46728455	0	1	827	0
chr2	46727655	46728568	brain_AmbionMAQC.40159	0	.	46727655	46728568	0	1	913	0
chr2	46731707	46733600	B_cells_Cheung.170091	0	.	46731707	46733600	0	1	1893	0
chr2	46732286	46736629	HIT000047361	0	+	46732286	46736629	0	1	4343	0
chr2	46732457	46733767	HepG2_Caltech_ENCODE.33222	0	.	46732457	46733767	0	1	1310	0
chr2	46732929	46733695	B_Cells_Pritchard.2737549	0	.	46732929	46733695	0	1	766	0
chr2	46733029	46733432	A549_Myers.77196	0	.	46733029	46733432	0	1	403	0
chr2	46735606	46738223	HepG2_Caltech_ENCODE.33224	0	.	46735606	46738223	0	1	2617	0
chr2	46736158	46738225	REMC_MyoepithelialBreast.80484	0	.	46736158	46738225	0	1	2067	0
chr2	46736530	46737200	prostate_normal.52769	0	.	46736530	46737200	0	1	670	0
chr2	46738543	46741037	H1_polyA+.101537	0	.	46738543	46741037	0	1	2494	0
chr2	46739519	46751481	REMC_BreastStem.44084	0	+	46739519	46751481	0	3	149,109,2409	0,9364,9553
chr2	46740294	46741247	prostate_carcinoma.87567	0	.	46740294	46741247	0	1	953	0
chr2	46740694	46743112	REMC_LuminalBreast.87063	0	.	46740694	46743112	0	1	2418	0
chr2	46742524	46743560	H1_polyA+.101538	0	.	46742524	46743560	0	1	1036	0
chr2	46742933	46745975	prostate_carcinoma.87568	0	.	46742933	46745975	0	1	3042	0
chr2	46743465	46745491	REMC_LuminalBreast.87064	0	.	46743465	46745491	0	1	2026	0
chr2	46745634	46747917	REMC_LuminalBreast.87065	0	.	46745634	46747917	0	1	2283	0
chr2	46746308	46756202	prostate_carcinoma.87569	0	-	46746308	46756202	0	2	4559,329	0,9565
chr2	46746308	46751846	prostate_carcinoma.87570	0	.	46746308	46751846	0	1	5538	0
chr2	46746511	46748165	B_cells_Cheung.170102	0	.	46746511	46748165	0	1	1654	0
chr2	46746563	46747438	REMC_BreastStem.44086	0	.	46746563	46747438	0	1	875	0
chr2	46747214	46750944	H1_polyA+.101540	0	.	46747214	46750944	0	1	3730	0
chr2	46748553	46749817	B_Cells_Pritchard.2737617	0	.	46748553	46749817	0	1	1264	0
chr2	46748736	46749316	B_cells_Cheung.170104	0	.	46748736	46749316	0	1	580	0
chr2	46749058	46751481	REMC_BreastStem.44085	0	.	46749058	46751481	0	1	2423	0
chr2	46749512	46751421	HIT000043069	0	-	46749512	46751421	0	1	1909	0
chr2	46749597	46750726	B_cells_Cheung.170105	0	.	46749597	46750726	0	1	1129	0
chr2	46749618	46750976	prostate_normal.52775	0	.	46749618	46750976	0	1	1358	0
chr2	46758641	46759768	REMC_LuminalBreast.86601	0	.	46758641	46759768	0	1	1127	0
chr2	46758645	46759685	melanoma_Garraway_short_term_cultures.61027	0	.	46758645	46759685	0	1	1040	0
chr2	46763948	46764832	prostate_carcinoma.87574	0	.	46763948	46764832	0	1	884	0
chr2	46763951	46765625	melanoma_Garraway_short_term_cultures.61029	0	.	46763951	46765625	0	1	1674	0
chr2	46763952	46764861	REMC_BreastStem.44088	0	.	46763952	46764861	0	1	909	0
chr2	46763953	46765634	REMC_LuminalBreast.86603	0	.	46763953	46765634	0	1	1681	0
chr2	46763990	46779446	B_Cells_Pritchard.2737673	0	-	46763990	46779446	0	2	405,459	0,14997
chr2	46764020	46764856	H1_polyA+.101493	0	.	46764020	46764856	0	1	836	0
chr2	46852030	46857926	REMC_LuminalBreast.86613	0	.	46852030	46857926	0	1	5896	0
chr2	46854877	46855630	H1_polyA+.101547	0	.	46854877	46855630	0	1	753	0
chr2	46855140	46856227	B_cells_Cheung.170185	0	.	46855140	46856227	0	1	1087	0
chr2	46855184	46855933	REMC_BreastStem.44108	0	.	46855184	46855933	0	1	749	0
chr2	46857999	46872078	REMC_LuminalBreast.86614	0	.	46857999	46872078	0	1	14079	0
chr2	46858425	46860888	HIT000007214	0	-	46858425	46860888	0	1	2463	0
chr2	46858637	46859675	B_Cells_Pritchard.2737925	0	.	46858637	46859675	0	1	1038	0
chr2	46858675	46860911	melanoma_Garraway_short_term_cultures.61043	0	.	46858675	46860911	0	1	2236	0
chr2	46858678	46859635	HepG2_Caltech_ENCODE.33241	0	.	46858678	46859635	0	1	957	0
chr2	46858697	46860977	H1_polyA+.101548	0	.	46858697	46860977	0	1	2280	0
chr2	46858834	46859560	B_cells_Cheung.170190	0	.	46858834	46859560	0	1	726	0
chr2	46858982	46859573	MeWo_Garraway.32781	0	.	46858982	46859573	0	1	591	0
chr2	46859817	46863705	B_cells_Cheung.170191	0	.	46859817	46863705	0	1	3888	0
chr2	46861447	46862471	HepG2_Caltech_ENCODE.33243	0	.	46861447	46862471	0	1	1024	0
chr2	46862009	46862947	REMC_BreastStem.44110	0	.	46862009	46862947	0	1	938	0
chr2	46863865	46864635	MIP101.60834	0	.	46863865	46864635	0	1	770	0
chr2	46863882	46865450	prostate_carcinoma.87532	0	.	46863882	46865450	0	1	1568	0
chr2	46863962	46867271	B_Cells_Pritchard.2737931	0	.	46863962	46867271	0	1	3309	0
chr2	46864246	46865574	B_cells_Cheung.170193	0	.	46864246	46865574	0	1	1328	0
chr2	46867455	46868837	REMC_MyoepithelialBreast.80505	0	.	46867455	46868837	0	1	1382	0
chr2	46867571	46868572	prostate_carcinoma.87534	0	.	46867571	46868572	0	1	1001	0
chr2	46867571	46868911	melanoma_Garraway_short_term_cultures.61045	0	.	46867571	46868911	0	1	1340	0
chr2	46867572	46868985	B_cells_Cheung.170197	0	.	46867572	46868985	0	1	1413	0
chr2	46867572	46869071	REMC_BreastStem.44113	0	.	46867572	46869071	0	1	1499	0
chr2	46867577	46868972	B_Cells_Pritchard.2737935	0	.	46867577	46868972	0	1	1395	0
chr2	46867614	46868962	prostate_normal.52788	0	.	46867614	46868962	0	1	1348	0
chr2	46867719	46868981	HepG2_Caltech_ENCODE.33246	0	.	46867719	46868981	0	1	1262	0
chr2	46871933	46876370	REMC_MyoepithelialBreast.80507	0	.	46871933	46876370	0	1	4437	0
chr2	46874174	46877407	REMC_LuminalBreast.86615	0	.	46874174	46877407	0	1	3233	0
chr2	46875455	46876196	B_Cells_Pritchard.2737963	0	.	46875455	46876196	0	1	741	0
chr2	46875702	46876358	H1_polyA+.101551	0	.	46875702	46876358	0	1	656	0
chr2	46876705	46877663	melanoma_Garraway_short_term_cultures.61046	0	.	46876705	46877663	0	1	958	0
chr2	46876914	46878324	B_Cells_Pritchard.2737987	0	.	46876914	46878324	0	1	1410	0
chr2	46877629	46880513	REMC_LuminalBreast.86616	0	.	46877629	46880513	0	1	2884	0
chr2	46878446	46879855	B_Cells_Pritchard.2737989	0	.	46878446	46879855	0	1	1409	0
chr2	46878599	46879870	B_cells_Cheung.170206	0	.	46878599	46879870	0	1	1271	0
chr2	46878695	46879681	prostate_carcinoma.87537	0	.	46878695	46879681	0	1	986	0
chr2	46878758	46879695	HepG2_Caltech_ENCODE.33247	0	.	46878758	46879695	0	1	937	0
chr2	46882085	46883601	REMC_MyoepithelialBreast.80510	0	.	46882085	46883601	0	1	1516	0
chr2	46882370	46884864	REMC_LuminalBreast.86619	0	.	46882370	46884864	0	1	2494	0
chr2	46884060	46885095	B_Cells_Pritchard.2738005	0	.	46884060	46885095	0	1	1035	0
chr2	46884150	46884914	REMC_MyoepithelialBreast.80511	0	.	46884150	46884914	0	1	764	0
chr2	46884265	46885033	B_cells_Cheung.170207	0	.	46884265	46885033	0	1	768	0
chr2	46887341	46888144	REMC_LuminalBreast.86621	0	.	46887341	46888144	0	1	803	0
chr2	46891205	46892734	REMC_LuminalBreast.86618	0	.	46891205	46892734	0	1	1529	0
chr2	46891772	46892943	H1_polyA+.101553	0	.	46891772	46892943	0	1	1171	0
chr2	46893144	46896360	REMC_LuminalBreast.86624	0	.	46893144	46896360	0	1	3216	0
chr2	46893752	46894540	prostate_carcinoma.87539	0	.	46893752	46894540	0	1	788	0
chr2	46895870	46896262	B_cells_Cheung.170214	0	.	46895870	46896262	0	1	392	0
chr2	46951038	46951586	A549_Myers.77235	0	.	46951038	46951586	0	1	548	0
chr2	46954803	46955221	A549_Myers.77237	0	.	46954803	46955221	0	1	418	0
chr2	46958252	46959411	prostate_carcinoma.87547	0	.	46958252	46959411	0	1	1159	0
chr2	46959040	46959449	A549_Myers.77239	0	.	46959040	46959449	0	1	409	0
chr2	46962035	46962915	A549_Myers.77241	0	.	46962035	46962915	0	1	880	0
chr2	46970037	46970373	REMC_MyoepithelialBreast.80527	0	.	46970037	46970373	0	1	336	0
chr2	46978189	46980240	REMC_LuminalBreast.86924	0	.	46978189	46980240	0	1	2051	0
chr2	47271623	47273764	REMC_MyoepithelialBreast.80736	0	.	47271623	47273764	0	1	2141	0
chr2	47272149	47272731	brain_AmbionMAQC.40242	0	.	47272149	47272731	0	1	582	0
chr2	47272613	47273351	H1_polyA+.101580	0	.	47272613	47273351	0	1	738	0
chr2	47272841	47273446	brain_AmbionMAQC.40243	0	.	47272841	47273446	0	1	605	0
chr2	47274518	47275431	REMC_MyoepithelialBreast.80737	0	.	47274518	47275431	0	1	913	0
chr2	47275390	47275814	A549_Myers.77340	0	.	47275390	47275814	0	1	424	0
chr2	47352131	47353387	B_Cells_Pritchard.2739145	0	.	47352131	47353387	0	1	1256	0
chr2	47352870	47353458	A549_Myers.77344	0	.	47352870	47353458	0	1	588	0
chr2	47361824	47362427	B_cells_Cheung.170274	0	.	47361824	47362427	0	1	603	0
chr2	47362930	47365426	B_Cells_Pritchard.2739181	0	.	47362930	47365426	0	1	2496	0
chr2	47364044	47365922	B_cells_Cheung.170276	0	.	47364044	47365922	0	1	1878	0
chr2	47364046	47364524	A549_Myers.77349	0	.	47364046	47364524	0	1	478	0
chr2	47373094	47373470	B_cells_Cheung.170282	0	.	47373094	47373470	0	1	376	0
chr2	47373189	47373515	prostate_carcinoma.87656	0	.	47373189	47373515	0	1	326	0
chr2	47379374	47379839	B_cells_Cheung.170287	0	.	47379374	47379839	0	1	465	0
chr2	47387475	47408320	HepG2_Caltech_ENCODE.33288	0	+	47387475	47408320	0	2	1466,1898	0,18947
chr2	47389520	47392281	HepG2_Caltech_ENCODE.33291	0	.	47389520	47392281	0	1	2761	0
chr2	47389675	47391530	HIT000017026	0	-	47389675	47391530	0	1	1855	0
chr2	47390360	47392279	prostate_normal.52811	0	.	47390360	47392279	0	1	1919	0
chr2	47391242	47392079	H1_polyA+.101586	0	.	47391242	47392079	0	1	837	0
chr2	47391254	47391650	B_cells_Cheung.170301	0	.	47391254	47391650	0	1	396	0
chr2	47398973	47399590	HepG2_Caltech_ENCODE.33292	0	.	47398973	47399590	0	1	617	0
chr2	47403584	47404748	prostate_carcinoma.87669	0	.	47403584	47404748	0	1	1164	0
chr2	47405699	47408349	H1_polyA+.101633	0	.	47405699	47408349	0	1	2650	0
chr2	47405857	47409427	REMC_LuminalBreast.86881	0	.	47405857	47409427	0	1	3570	0
chr2	47408401	47414467	HepG2_Caltech_ENCODE.33289	0	.	47408401	47414467	0	1	6066	0
chr2	47408408	47410072	H1_polyA+.101634	0	.	47408408	47410072	0	1	1664	0
chr2	47409237	47409909	prostate_normal.52815	0	.	47409237	47409909	0	1	672	0
chr2	47409492	47410022	B_cells_Cheung.170306	0	.	47409492	47410022	0	1	530	0
chr2	47409565	47409893	H9_polyA+.40449	0	.	47409565	47409893	0	1	328	0
chr2	47411118	47414479	H1_polyA+.101636	0	.	47411118	47414479	0	1	3361	0
chr2	47411702	47425160	ENST00000418539	0	+	47411702	47425160	0	1	13458	0
chr2	47412761	47413571	prostate_carcinoma.87655	0	.	47412761	47413571	0	1	810	0
chr2	47413281	47416304	MIP101.60865	0	+	47413281	47416304	0	2	139,185	0,2838
chr2	47414551	47415972	REMC_LuminalBreast.86885	0	.	47414551	47415972	0	1	1421	0
chr2	47414654	47415980	H1_polyA+.101638	0	.	47414654	47415980	0	1	1326	0
chr2	47416750	47418412	H1_polyA+.101640	0	.	47416750	47418412	0	1	1662	0
chr2	47416850	47417353	A549_Myers.77362	0	.	47416850	47417353	0	1	503	0
chr2	47418761	47419618	prostate_carcinoma.87677	0	.	47418761	47419618	0	1	857	0
chr2	47418840	47419652	H1_polyA+.101641	0	.	47418840	47419652	0	1	812	0
chr2	47422060	47422676	H9_polyA-_Chen.12925	0	.	47422060	47422676	0	1	616	0
chr2	47468857	47469181	A549_Myers.77371	0	.	47468857	47469181	0	1	324	0
chr2	47653104	47655515	HIT000010047	0	+	47653104	47655515	0	1	2411	0
chr2	47698449	47698901	A549_Myers.77385	0	.	47698449	47698901	0	1	452	0
chr2	47710762	47711536	prostate_carcinoma.87636	0	.	47710762	47711536	0	1	774	0
chr2	47765079	47765894	H1_polyA+.101663	0	.	47765079	47765894	0	1	815	0
chr2	47765316	47765943	B_cells_Cheung.170352	0	.	47765316	47765943	0	1	627	0
chr2	47766058	47768838	H1_polyA+.101664	0	.	47766058	47768838	0	1	2780	0
chr2	47766177	47766974	HepG2_Caltech_ENCODE.33315	0	.	47766177	47766974	0	1	797	0
chr2	47766323	47767166	prostate_carcinoma.87640	0	.	47766323	47767166	0	1	843	0
chr2	47768600	47769649	HepG2_Caltech_ENCODE.33316	0	.	47768600	47769649	0	1	1049	0
chr2	47768968	47769693	prostate_carcinoma.87641	0	.	47768968	47769693	0	1	725	0
chr2	47768992	47770109	H1_polyA+.101665	0	.	47768992	47770109	0	1	1117	0
chr2	47788744	47790610	B_cells_Cheung.170362	0	.	47788744	47790610	0	1	1866	0
chr2	47788822	47790729	H1_polyA+.101670	0	.	47788822	47790729	0	1	1907	0
chr2	47803447	47804288	H1_polyA+.101679	0	.	47803447	47804288	0	1	841	0
chr2	47803624	47804013	B_Cells_Pritchard.2740751	0	.	47803624	47804013	0	1	389	0
chr2	47805393	47805799	B_Cells_Pritchard.2740761	0	-	47805393	47805799	0	1	406	0
chr2	47824457	47825115	B_Cells_Pritchard.2740851	0	.	47824457	47825115	0	1	658	0
chr2	47833037	47833371	B_cells_Cheung.170378	0	.	47833037	47833371	0	1	334	0
chr2	47848553	47848866	A549_Myers.77396	0	.	47848553	47848866	0	1	313	0
chr2	47852929	47854231	REMC_MyoepithelialBreast.80748	0	.	47852929	47854231	0	1	1302	0
chr2	47987479	47987855	K562.40178	0	.	47987479	47987855	0	1	376	0
chr2	47987481	47987924	CD4_Snyder.64135	0	.	47987481	47987924	0	1	443	0
chr2	47989528	47990198	B_Cells_Pritchard.2741183	0	.	47989528	47990198	0	1	670	0
chr2	47995389	47996301	prostate_carcinoma.87694	0	.	47995389	47996301	0	1	912	0
chr2	48127994	48170924	H9_polyA+.40504	0	+	48127994	48170924	0	2	413,175	0,42755
chr2	48160356	48192365	pHIT000072931	0	-	48160356	48192365	0	2	114,459	0,31550
chr2	48191906	48192365	pHIT000004159	0	-	48191906	48192365	0	1	459	0
chr2	48192074	48192593	A549_Myers.77412	0	.	48192074	48192593	0	1	519	0
chr2	48192458	48194977	REMC_MyoepithelialBreast.80761	0	.	48192458	48194977	0	1	2519	0
chr2	48192596	48194363	REMC_LuminalBreast.86915	0	.	48192596	48194363	0	1	1767	0
chr2	48193617	48198469	HIT000097263	0	+	48193617	48198469	0	1	4852	0
chr2	48197743	48219971	pHIT000004160	0	+	48197743	48219971	0	5	69,53,95,149,174	0,13877,14015,14278,22054
chr2	48235962	48236820	B_Cells_Pritchard.2741939	0	.	48235962	48236820	0	1	858	0
chr2	48236965	48237286	A549_Myers.77415	0	.	48236965	48237286	0	1	321	0
chr2	48323463	48324251	H1_polyA+.101699	0	.	48323463	48324251	0	1	788	0
chr2	48324922	48325326	B_Cells_Pritchard.2742335	0	.	48324922	48325326	0	1	404	0
chr2	48324950	48325291	B_cells_Cheung.170448	0	.	48324950	48325291	0	1	341	0
chr2	48325052	48325361	A549_Myers.77417	0	.	48325052	48325361	0	1	309	0
chr2	48336176	48336921	B_Cells_Pritchard.2742363	0	.	48336176	48336921	0	1	745	0
chr2	48382361	48383399	REMC_LuminalBreast.86917	0	.	48382361	48383399	0	1	1038	0
chr2	48463508	48466148	REMC_MyoepithelialBreast.80794	0	.	48463508	48466148	0	1	2640	0
chr2	48467446	48468552	REMC_MyoepithelialBreast.80797	0	.	48467446	48468552	0	1	1106	0
chr2	48467543	48468513	REMC_LuminalBreast.86951	0	.	48467543	48468513	0	1	970	0
chr2	48469081	48470801	REMC_MyoepithelialBreast.80798	0	.	48469081	48470801	0	1	1720	0
chr2	48469272	48471355	REMC_LuminalBreast.86952	0	.	48469272	48471355	0	1	2083	0
chr2	48598664	48601032	melanoma_Garraway_short_term_cultures.61154	0	.	48598664	48601032	0	1	2368	0
chr2	48602277	48603754	REMC_LuminalBreast.86963	0	.	48602277	48603754	0	1	1477	0
chr2	51113247	51409079	XR_041272	0	+	51113247	51409079	0	3	411,99,50	0,19750,295782
chr2	51530543	51530855	B_cells_Cheung.170755	0	.	51530543	51530855	0	1	312	0
chr2	51590987	51591316	B_cells_Cheung.170756	0	.	51590987	51591316	0	1	329	0
chr2	51806234	51808747	HepG2_Caltech_ENCODE.33374	0	.	51806234	51808747	0	1	2513	0
chr2	51854271	51854886	K562.40206	0	.	51854271	51854886	0	1	615	0
chr2	52439749	52441339	H1_polyA+.101952	0	.	52439749	52441339	0	1	1590	0
chr2	52460473	52463080	H1_polyA+.101962	0	.	52460473	52463080	0	1	2607	0
chr2	52495186	52496700	H1_polyA+.101943	0	.	52495186	52496700	0	1	1514	0
chr2	53030520	53031430	H1_polyA+.101969	0	.	53030520	53031430	0	1	910	0
chr2	53064616	53065640	H1_polyA+.101977	0	.	53064616	53065640	0	1	1024	0
chr2	53088838	53147994	pHIT000099624	0	+	53088838	53147994	0	3	59,435,107	0,13821,59049
chr2	53126866	53127532	H1_polyA+.101988	0	.	53126866	53127532	0	1	666	0
chr2	53167621	53169098	H1_polyA+.101994	0	.	53167621	53169098	0	1	1477	0
chr2	53437129	53437479	A549_Myers.77462	0	.	53437129	53437479	0	1	350	0
chr2	53499640	53502039	BT20_Thompson.19852	0	.	53499640	53502039	0	1	2399	0
chr2	53503374	53504189	MDAMB468_Thompson.22159	0	.	53503374	53504189	0	1	815	0
chr2	53503704	53504554	BT20_Thompson.19851	0	.	53503704	53504554	0	1	850	0
chr2	54058907	54059634	melanoma_Garraway_short_term_cultures.61233	0	.	54058907	54059634	0	1	727	0
chr2	54060631	54067270	REMC_LuminalBreast.86987	0	.	54060631	54067270	0	1	6639	0
chr2	54061684	54062087	melanoma_Garraway_short_term_cultures.61234	0	.	54061684	54062087	0	1	403	0
chr2	54065533	54066977	B_cells_Cheung.170908	0	.	54065533	54066977	0	1	1444	0
chr2	54067361	54070982	REMC_LuminalBreast.86990	0	.	54067361	54070982	0	1	3621	0
chr2	54068552	54071325	HIT000095300	0	+	54068552	54071325	0	1	2773	0
chr2	54076242	54083428	REMC_LuminalBreast.86995	0	.	54076242	54083428	0	1	7186	0
chr2	54079301	54080671	B_Cells_Pritchard.2756215	0	+	54079301	54080671	0	1	1370	0
chr2	54085562	54087513	REMC_LuminalBreast.86997	0	.	54085562	54087513	0	1	1951	0
chr2	54085811	54086159	B_cells_Cheung.170944	0	.	54085811	54086159	0	1	348	0
chr2	54087071	54087717	prostate_carcinoma.88123	0	.	54087071	54087717	0	1	646	0
chr2	54094225	54094975	liver_polyA+.116403	0	+	54094225	54094975	0	2	170,230	0,520
chr2	54095375	54097366	B_cells_Cheung.170957	0	.	54095375	54097366	0	1	1991	0
chr2	54099215	54100139	H1_polyA+.102110	0	.	54099215	54100139	0	1	924	0
chr2	54099556	54107082	REMC_LuminalBreast.87003	0	.	54099556	54107082	0	1	7526	0
chr2	54103998	54104835	H1_polyA+.102114	0	.	54103998	54104835	0	1	837	0
chr2	54104693	54106072	REMC_BreastStem.44249	0	.	54104693	54106072	0	1	1379	0
chr2	54105121	54106365	B_cells_Cheung.170967	0	.	54105121	54106365	0	1	1244	0
chr2	54105184	54106563	B_Cells_Pritchard.2756281	0	+	54105184	54106563	0	1	1379	0
chr2	54105475	54106579	H1_polyA+.102115	0	.	54105475	54106579	0	1	1104	0
chr2	54119374	54120472	B_Cells_Pritchard.2756309	0	+	54119374	54120472	0	1	1098	0
chr2	54119935	54120455	B_cells_Cheung.170985	0	.	54119935	54120455	0	1	520	0
chr2	54120079	54120451	H1_polyA+.102123	0	.	54120079	54120451	0	1	372	0
chr2	54120565	54122749	REMC_LuminalBreast.87010	0	.	54120565	54122749	0	1	2184	0
chr2	54120600	54128278	B_Cells_Pritchard.2752583	0	+	54120600	54128278	0	5	2160,877,369,153,1223	0,3686,4586,6146,6455
chr2	54121782	54122774	B_cells_Cheung.170987	0	.	54121782	54122774	0	1	992	0
chr2	54121804	54122753	prostate_normal.52903	0	.	54121804	54122753	0	1	949	0
chr2	54126937	54131430	REMC_LuminalBreast.87012	0	.	54126937	54131430	0	1	4493	0
chr2	54129914	54130699	prostate_carcinoma.88149	0	.	54129914	54130699	0	1	785	0
chr2	54130194	54130687	B_Cells_Pritchard.2752603	0	+	54130194	54130687	0	1	493	0
chr2	54130208	54130877	H1_polyA+.102131	0	.	54130208	54130877	0	1	669	0
chr2	54133349	54135686	REMC_LuminalBreast.87015	0	.	54133349	54135686	0	1	2337	0
chr2	54133489	54134375	melanoma_Garraway_short_term_cultures.61254	0	.	54133489	54134375	0	1	886	0
chr2	54133651	54134830	HepG2_Caltech_ENCODE.33425	0	.	54133651	54134830	0	1	1179	0
chr2	54133823	54134872	prostate_normal.52909	0	.	54133823	54134872	0	1	1049	0
chr2	54133837	54134435	prostate_carcinoma.88144	0	.	54133837	54134435	0	1	598	0
chr2	54148451	54149283	B_cells_Cheung.171011	0	.	54148451	54149283	0	1	832	0
chr2	54149627	54150054	B_cells_Cheung.171012	0	.	54149627	54150054	0	1	427	0
chr2	54152955	54153336	B_cells_Cheung.171017	0	.	54152955	54153336	0	1	381	0
chr2	54158109	54158581	B_cells_Cheung.171047	0	.	54158109	54158581	0	1	472	0
chr2	54163596	54179735	B_Cells_Pritchard.2752679	0	+	54163596	54179735	0	2	1547,156	0,15983
chr2	54163611	54165122	H1_polyA+.102038	0	.	54163611	54165122	0	1	1511	0
chr2	54165198	54165984	B_cells_Cheung.171082	0	.	54165198	54165984	0	1	786	0
chr2	54178703	54181053	REMC_LuminalBreast.87030	0	.	54178703	54181053	0	1	2350	0
chr2	54179053	54179420	B_cells_Cheung.171087	0	.	54179053	54179420	0	1	367	0
chr2	54179442	54180441	H1_polyA+.102042	0	.	54179442	54180441	0	1	999	0
chr2	54179488	54180714	prostate_carcinoma.88157	0	.	54179488	54180714	0	1	1226	0
chr2	54181170	54185552	REMC_LuminalBreast.87031	0	.	54181170	54185552	0	1	4382	0
chr2	54182254	54183754	B_cells_Cheung.171091	0	.	54182254	54183754	0	1	1500	0
chr2	54182676	54183886	prostate_carcinoma.88161	0	.	54182676	54183886	0	1	1210	0
chr2	54182896	54184173	H1_polyA+.102043	0	.	54182896	54184173	0	1	1277	0
chr2	54182926	54183668	prostate_normal.52917	0	.	54182926	54183668	0	1	742	0
chr2	54182970	54183904	B_Cells_Pritchard.2752701	0	.	54182970	54183904	0	1	934	0
chr2	54185532	54186961	REMC_MyoepithelialBreast.80885	0	.	54185532	54186961	0	1	1429	0
chr2	54185727	54188924	REMC_LuminalBreast.87032	0	.	54185727	54188924	0	1	3197	0
chr2	54185732	54186289	B_cells_Cheung.171093	0	.	54185732	54186289	0	1	557	0
chr2	54753758	54754407	pHIT000004184	0	-	54753758	54754407	0	2	154,179	0,470
chr2	54760209	54762000	REMC_LuminalBreast.87069	0	.	54760209	54762000	0	1	1791	0
chr2	54761438	54761744	A549_Myers.77529	0	.	54761438	54761744	0	1	306	0
chr2	54781154	54781956	REMC_MyoepithelialBreast.80965	0	.	54781154	54781956	0	1	802	0
chr2	54789168	54789808	A549_Myers.77530	0	.	54789168	54789808	0	1	640	0
chr2	54789947	54790687	MIP101.61087	0	.	54789947	54790687	0	1	740	0
chr2	54790294	54790759	prostate_carcinoma.87864	0	.	54790294	54790759	0	1	465	0
chr2	54803012	54803908	REMC_LuminalBreast.87074	0	.	54803012	54803908	0	1	896	0
chr2	55200641	55201805	K562.40544	0	.	55200641	55201805	0	1	1164	0
chr2	55202926	55203583	K562.40545	0	.	55202926	55203583	0	1	657	0
chr2	55203182	55203536	A549_Myers.77560	0	.	55203182	55203536	0	1	354	0
chr2	55217887	55218589	B_Cells_Pritchard.2755699	0	.	55217887	55218589	0	1	702	0
chr2	55218084	55218549	brain_AmbionMAQC.40322	0	.	55218084	55218549	0	1	465	0
chr2	55222438	55248544	pHIT000073055	0	+	55222438	55248544	0	6	59,69,106,120,106,143	0,14884,16757,19185,22081,25963
chr2	55236877	55237981	REMC_LuminalBreast.87151	0	.	55236877	55237981	0	1	1104	0
chr2	55353705	55354579	REMC_MyoepithelialBreast.80999	0	.	55353705	55354579	0	1	874	0
chr2	55354692	55355658	REMC_MyoepithelialBreast.81000	0	.	55354692	55355658	0	1	966	0
chr2	55356373	55356737	HeLa_polyA+_Chen.32270	0	.	55356373	55356737	0	1	364	0
chr2	55362181	55362796	HeLa_polyA+_Chen.32274	0	.	55362181	55362796	0	1	615	0
chr2	55518320	55520098	A549_Myers.77585	0	-	55518320	55520098	0	2	474,47	0,1731
chr2	55575538	55576671	REMC_MyoepithelialBreast.81028	0	.	55575538	55576671	0	1	1133	0
chr2	55575719	55576691	REMC_LuminalBreast.87174	0	.	55575719	55576691	0	1	972	0
chr2	55575878	55576546	melanoma_Garraway_short_term_cultures.61349	0	.	55575878	55576546	0	1	668	0
chr2	55593063	55593758	B_Cells_Pritchard.2756907	0	.	55593063	55593758	0	1	695	0
chr2	55626741	55627041	melanoma_Garraway_short_term_cultures.61358	0	.	55626741	55627041	0	1	300	0
chr2	55699755	55700303	liver_polyA+.116586	0	.	55699755	55700303	0	1	548	0
chr2	55699812	55703281	HeLa_polyA+_Chen.32280	0	.	55699812	55703281	0	1	3469	0
chr2	55699814	55700230	MCF7_Burge_Thompson.28855	0	.	55699814	55700230	0	1	416	0
chr2	55699877	55700274	kidney_Gilad.75269	0	.	55699877	55700274	0	1	397	0
chr2	55700521	55705110	H1_polyA+.102239	0	.	55700521	55705110	0	1	4589	0
chr2	55700599	55704809	REMC_LuminalBreast.87196	0	.	55700599	55704809	0	1	4210	0
chr2	55701699	55703069	HeLa_polyA-_Chen.17049	0	.	55701699	55703069	0	1	1370	0
chr2	55701712	55702828	BT20_Thompson.19888	0	.	55701712	55702828	0	1	1116	0
chr2	55701714	55703230	REMC_BreastStem.44350	0	.	55701714	55703230	0	1	1516	0
chr2	55701736	55704660	melanoma_Garraway_short_term_cultures.61368	0	.	55701736	55704660	0	1	2924	0
chr2	55701736	55705110	K562.40375	0	.	55701736	55705110	0	1	3374	0
chr2	55701741	55704753	CD4_Snyder.64534	0	.	55701741	55704753	0	1	3012	0
chr2	55701750	55703379	prostate_normal.53093	0	.	55701750	55703379	0	1	1629	0
chr2	55701771	55704845	REMC_MyoepithelialBreast.81045	0	.	55701771	55704845	0	1	3074	0
chr2	55701805	55702832	liver_polyA+.116580	0	.	55701805	55702832	0	1	1027	0
chr2	55702010	55703144	CD4_Plagnol_activated.58710	0	.	55702010	55703144	0	1	1134	0
chr2	55702057	55702846	MCF7_Burge_Thompson.28856	0	.	55702057	55702846	0	1	789	0
chr2	55702075	55702815	brain_AmbionMAQC.40356	0	.	55702075	55702815	0	1	740	0
chr2	55702164	55702607	BT474_Burge_Thompson.31619	0	.	55702164	55702607	0	1	443	0
chr2	55702272	55703366	CD4_Plagnol_resting.57158	0	.	55702272	55703366	0	1	1094	0
chr2	55702284	55702746	H9_polyA+.40623	0	.	55702284	55702746	0	1	462	0
chr2	55703064	55703544	A549_Myers.77607	0	.	55703064	55703544	0	1	480	0
chr2	55705057	55712801	B_Cells_Pritchard.2757033	0	+	55705057	55712801	0	4	3117,634,1139,76	0,3120,5303,7668
chr2	55710291	55711522	REMC_LuminalBreast.87198	0	.	55710291	55711522	0	1	1231	0
chr2	55712354	55713300	REMC_MyoepithelialBreast.81050	0	.	55712354	55713300	0	1	946	0
chr2	55712757	55713568	REMC_LuminalBreast.87200	0	.	55712757	55713568	0	1	811	0
chr2	55826321	55827609	REMC_MyoepithelialBreast.81071	0	.	55826321	55827609	0	1	1288	0
chr2	55828460	55829012	REMC_MyoepithelialBreast.81073	0	.	55828460	55829012	0	1	552	0
chr2	55841004	55844534	REMC_MyoepithelialBreast.81082	0	.	55841004	55844534	0	1	3530	0
chr2	55855393	55861937	REMC_MyoepithelialBreast.81090	0	.	55855393	55861937	0	1	6544	0
chr2	55876290	55877676	REMC_MyoepithelialBreast.81098	0	.	55876290	55877676	0	1	1386	0
chr2	56207135	56207756	H1_rRNA-depleted_UCSD_REMC.77009	0	.	56207135	56207756	0	1	621	0
chr2	56247841	56248264	H1_rRNA-depleted_UCSD_REMC.77020	0	.	56247841	56248264	0	1	423	0
chr2	56255818	56261115	H1_polyA+.102257	0	.	56255818	56261115	0	1	5297	0
chr2	56255822	56257303	ZR751_Thompson.21819	0	.	56255822	56257303	0	1	1481	0
chr2	56255825	56257004	T47D_Burge_Thompson.26656	0	.	56255825	56257004	0	1	1179	0
chr2	56255829	56257290	MCF7_Burge_Thompson.28881	0	.	56255829	56257290	0	1	1461	0
chr2	56255882	56257341	MIP101.61175	0	.	56255882	56257341	0	1	1459	0
chr2	57050466	57050958	B_Cells_Pritchard.2759563	0	.	57050466	57050958	0	1	492	0
chr2	57375624	57375960	B_cells_Cheung.171417	0	.	57375624	57375960	0	1	336	0
chr2	57476269	57476910	B_cells_Cheung.171441	0	.	57476269	57476910	0	1	641	0
chr2	57476963	57477770	B_cells_Cheung.171442	0	.	57476963	57477770	0	1	807	0
chr2	57477870	57478445	B_cells_Cheung.171443	0	.	57477870	57478445	0	1	575	0
chr2	57478090	57479925	B_Cells_Pritchard.2760711	0	.	57478090	57479925	0	1	1835	0
chr2	57577501	57578593	B_cells_Cheung.171469	0	.	57577501	57578593	0	1	1092	0
chr2	57663414	57665249	B_cells_Cheung.171501	0	.	57663414	57665249	0	1	1835	0
chr2	57663422	57664290	B_Cells_Pritchard.2761271	0	.	57663422	57664290	0	1	868	0
chr2	57665402	57666034	B_Cells_Pritchard.2761279	0	.	57665402	57666034	0	1	632	0
chr2	57730366	57732250	B_cells_Cheung.171523	0	.	57730366	57732250	0	1	1884	0
chr2	57730392	57732519	B_Cells_Pritchard.2761481	0	.	57730392	57732519	0	1	2127	0
chr2	57732838	57733966	B_Cells_Pritchard.2761485	0	.	57732838	57733966	0	1	1128	0
chr2	57733333	57733913	B_cells_Cheung.171526	0	.	57733333	57733913	0	1	580	0
chr2	57735461	57735904	B_Cells_Pritchard.2761489	0	.	57735461	57735904	0	1	443	0
chr2	57830013	57848057	B_Cells_Pritchard.2762073	0	+	57830013	57848057	0	2	72,2333	0,15711
chr2	57845347	57847927	B_cells_Cheung.171545	0	.	57845347	57847927	0	1	2580	0
chr2	57845399	57846440	H1_polyA+.102270	0	.	57845399	57846440	0	1	1041	0
chr2	57851263	57851772	B_Cells_Pritchard.2761961	0	.	57851263	57851772	0	1	509	0
chr2	57874074	57874640	B_cells_Cheung.171562	0	.	57874074	57874640	0	1	566	0
chr2	57917305	57917899	B_cells_Cheung.171568	0	.	57917305	57917899	0	1	594	0
chr2	57917362	57917835	B_Cells_Pritchard.2762163	0	.	57917362	57917835	0	1	473	0
chr2	57930142	57931642	B_Cells_Pritchard.2762215	0	.	57930142	57931642	0	1	1500	0
chr2	57930463	57930768	B_cells_Cheung.171570	0	.	57930463	57930768	0	1	305	0
chr2	57930618	57931061	A549_Myers.77642	0	.	57930618	57931061	0	1	443	0
chr2	57931316	57931646	A549_Myers.77643	0	.	57931316	57931646	0	1	330	0
chr2	58356515	58377187	ENST00000454367	0	+	58356515	58377187	0	3	306,356,151	0,17812,20521
chr2	58509023	58509824	A549_Myers.77688	0	.	58509023	58509824	0	1	801	0
chr2	58548993	58550976	H1_polyA+.102352	0	.	58548993	58550976	0	1	1983	0
chr2	58559068	58560839	H1_polyA+.102356	0	.	58559068	58560839	0	1	1771	0
chr2	58614337	58614738	H1_rRNA-depleted_UCSD_REMC.77070	0	.	58614337	58614738	0	1	401	0
chr2	58630403	58630720	H1_rRNA-depleted_UCSD_REMC.77071	0	.	58630403	58630720	0	1	317	0
chr2	58820963	58821367	K562.40399	0	.	58820963	58821367	0	1	404	0
chr2	59008204	59012811	H1_polyA+.102390	0	.	59008204	59012811	0	1	4607	0
chr2	59009639	59010974	REMC_LuminalBreast.87289	0	.	59009639	59010974	0	1	1335	0
chr2	59109870	59112534	H1_polyA+.102392	0	.	59109870	59112534	0	1	2664	0
chr2	60241112	60241437	A549_Myers.77743	0	.	60241112	60241437	0	1	325	0
chr2	60635403	60636020	MIP101.61234	0	.	60635403	60636020	0	1	617	0
chr2	60662270	60662767	A549_Myers.77755	0	.	60662270	60662767	0	1	497	0
chr2	60755210	60755552	A549_Myers.77757	0	.	60755210	60755552	0	1	342	0
chr2	60884202	60885535	B_Cells_Pritchard.2768429	0	.	60884202	60885535	0	1	1333	0
chr2	60898421	60898797	B_cells_Cheung.171742	0	.	60898421	60898797	0	1	376	0
chr2	60900807	60901155	B_Cells_Pritchard.2768503	0	.	60900807	60901155	0	1	348	0
chr2	60915965	60917219	B_Cells_Pritchard.2768579	0	.	60915965	60917219	0	1	1254	0
chr2	61010427	61014638	CD4_Plagnol_activated.59102	0	.	61010427	61014638	0	1	4211	0
chr2	61010446	61012483	BT20_Thompson.19916	0	.	61010446	61012483	0	1	2037	0
chr2	61010448	61013042	H1_polyA+.102493	0	.	61010448	61013042	0	1	2594	0
chr2	61010454	61012670	MDAMB468_Thompson.22266	0	.	61010454	61012670	0	1	2216	0
chr2	61010482	61012647	melanoma_Garraway_short_term_cultures.61437	0	.	61010482	61012647	0	1	2165	0
chr2	61013106	61016280	MDAMB468_Thompson.22267	0	.	61013106	61016280	0	1	3174	0
chr2	61014638	61016367	CD4_Plagnol_activated.59135	0	.	61014638	61016367	0	1	1729	0
chr2	61014660	61016303	melanoma_Garraway_short_term_cultures.61440	0	.	61014660	61016303	0	1	1643	0
chr2	61015489	61016055	MeWo_Garraway.33029	0	.	61015489	61016055	0	1	566	0
chr2	61134646	61138955	REMC_MyoepithelialBreast.81226	0	.	61134646	61138955	0	1	4309	0
chr2	61134668	61136035	HepG2_Caltech_ENCODE.33566	0	.	61134668	61136035	0	1	1367	0
chr2	61134688	61138882	REMC_LuminalBreast.88016	0	.	61134688	61138882	0	1	4194	0
chr2	61134719	61137319	H1_polyA+.102510	0	.	61134719	61137319	0	1	2600	0
chr2	61136109	61138984	B_cells_Cheung.171776	0	.	61136109	61138984	0	1	2875	0
chr2	61136109	61137377	MDAMB468_Thompson.22276	0	.	61136109	61137377	0	1	1268	0
chr2	61136161	61137159	BT474_Burge_Thompson.31651	0	.	61136161	61137159	0	1	998	0
chr2	61136172	61138823	HepG2_Caltech_ENCODE.33567	0	.	61136172	61138823	0	1	2651	0
chr2	61137485	61140234	H1_polyA+.102511	0	.	61137485	61140234	0	1	2749	0
chr2	61137859	61139694	REMC_BreastStem.44851	0	.	61137859	61139694	0	1	1835	0
chr2	61555962	61556665	CD4_Plagnol_resting.57294	0	.	61555962	61556665	0	1	703	0
chr2	61555973	61556985	CD4_Plagnol_activated.58900	0	.	61555973	61556985	0	1	1012	0
chr2	61762690	61763715	REMC_MyoepithelialBreast.81231	0	.	61762690	61763715	0	1	1025	0
chr2	61774590	61775307	B_Cells_Pritchard.2770327	0	+	61774590	61775307	0	1	717	0
chr2	61775033	61775780	A549_Myers.77839	0	.	61775033	61775780	0	1	747	0
chr2	61824624	61845550	Rinn_00004271	0	-	61824624	61845550	0	2	1138,880	0,20046
chr2	61825278	61847241	REMC_LuminalBreast.87355	0	-	61825278	61847241	0	2	484,2570	0,19393
chr2	61836769	61837077	B_cells_Cheung.171885	0	.	61836769	61837077	0	1	308	0
chr2	61839460	61845920	B_Cells_Pritchard.2770527	0	-	61839460	61845920	0	2	100,1860	0,4600
chr2	61840795	61845920	B_Cells_Pritchard.2770525	0	+	61840795	61845920	0	2	348,1559	0,3566
chr2	61841967	61847241	REMC_LuminalBreast.87356	0	.	61841967	61847241	0	1	5274	0
chr2	61843249	61844896	REMC_MyoepithelialBreast.81234	0	.	61843249	61844896	0	1	1647	0
chr2	61843387	61845557	H1_polyA+.102538	0	.	61843387	61845557	0	1	2170	0
chr2	61843541	61845609	prostate_carcinoma.88175	0	.	61843541	61845609	0	1	2068	0
chr2	61843552	61844893	REMC_BreastStem.44468	0	.	61843552	61844893	0	1	1341	0
chr2	61843641	61845719	B_cells_Cheung.171894	0	.	61843641	61845719	0	1	2078	0
chr2	61843844	61845066	HepG2_Caltech_ENCODE.33601	0	.	61843844	61845066	0	1	1222	0
chr2	61844101	61844944	melanoma_Garraway_short_term_cultures.61545	0	.	61844101	61844944	0	1	843	0
chr2	61844149	61845014	K562.40473	0	.	61844149	61845014	0	1	865	0
chr2	61844157	61862135	MCF7_Burge_Thompson.28932	0	+	61844157	61862135	0	2	568,57	0,17921
chr2	61844158	61844962	CD4_Snyder.64779	0	.	61844158	61844962	0	1	804	0
chr2	61844166	61844999	HeLa_polyA-_Chen.17093	0	.	61844166	61844999	0	1	833	0
chr2	61844207	61844887	MIP101.61331	0	.	61844207	61844887	0	1	680	0
chr2	61844249	61844756	HeLa_polyA+_Chen.32353	0	.	61844249	61844756	0	1	507	0
chr2	61844330	61845431	T47D_Burge_Thompson.26693	0	.	61844330	61845431	0	1	1101	0
chr2	61844360	61845529	A549_Myers.77841	0	.	61844360	61845529	0	1	1169	0
chr2	61844378	61845018	prostate_normal.53163	0	.	61844378	61845018	0	1	640	0
chr2	61844395	61845265	BT20_Thompson.19937	0	.	61844395	61845265	0	1	870	0
chr2	61844418	61844885	MeWo_Garraway.33067	0	.	61844418	61844885	0	1	467	0
chr2	61844529	61844885	liver_polyA+.116907	0	.	61844529	61844885	0	1	356	0
chr2	61844975	61845689	REMC_BreastStem.44470	0	.	61844975	61845689	0	1	714	0
chr2	61854011	61854381	B_Cells_Pritchard.2770575	0	.	61854011	61854381	0	1	370	0
chr2	61874052	61874473	A549_Myers.77842	0	.	61874052	61874473	0	1	421	0
chr2	61874064	61874429	B_Cells_Pritchard.2770649	0	.	61874064	61874429	0	1	365	0
chr2	61890093	61891098	B_Cells_Pritchard.2770715	0	.	61890093	61891098	0	1	1005	0
chr2	61940423	61940840	B_cells_Cheung.171978	0	.	61940423	61940840	0	1	417	0
chr2	61941785	61943821	REMC_MyoepithelialBreast.81244	0	.	61941785	61943821	0	1	2036	0
chr2	62227967	62236739	REMC_LuminalBreast.87367	0	.	62227967	62236739	0	1	8772	0
chr2	62230996	62234588	B_cells_Cheung.171988	0	.	62230996	62234588	0	1	3592	0
chr2	62231619	62232333	HeLa_polyA+_Chen.32376	0	.	62231619	62232333	0	1	714	0
chr2	62231935	62234623	HIT000043190	0	+	62231935	62234623	0	1	2688	0
chr2	62234609	62236370	REMC_MyoepithelialBreast.81256	0	.	62234609	62236370	0	1	1761	0
chr2	62234684	62236341	H1_polyA+.102630	0	.	62234684	62236341	0	1	1657	0
chr2	62235289	62236355	B_cells_Cheung.171990	0	.	62235289	62236355	0	1	1066	0
chr2	62241542	62244201	REMC_LuminalBreast.87370	0	.	62241542	62244201	0	1	2659	0
chr2	62241880	62244473	B_cells_Cheung.171994	0	.	62241880	62244473	0	1	2593	0
chr2	62244043	62245919	H1_polyA+.102633	0	.	62244043	62245919	0	1	1876	0
chr2	62244305	62246172	REMC_LuminalBreast.87371	0	.	62244305	62246172	0	1	1867	0
chr2	62244408	62245906	melanoma_Garraway_short_term_cultures.61577	0	.	62244408	62245906	0	1	1498	0
chr2	62244475	62246006	REMC_MyoepithelialBreast.81260	0	.	62244475	62246006	0	1	1531	0
chr2	62244538	62245936	B_cells_Cheung.171995	0	.	62244538	62245936	0	1	1398	0
chr2	62244592	62245914	B_Cells_Pritchard.2771673	0	.	62244592	62245914	0	1	1322	0
chr2	62244642	62245908	prostate_carcinoma.88213	0	.	62244642	62245908	0	1	1266	0
chr2	62246543	62248668	REMC_LuminalBreast.87372	0	.	62246543	62248668	0	1	2125	0
chr2	62246666	62248656	B_cells_Cheung.171996	0	.	62246666	62248656	0	1	1990	0
chr2	62246838	62248337	REMC_MyoepithelialBreast.81261	0	.	62246838	62248337	0	1	1499	0
chr2	62247047	62248166	H1_polyA+.102634	0	.	62247047	62248166	0	1	1119	0
chr2	62247079	62248169	melanoma_Garraway_short_term_cultures.61578	0	.	62247079	62248169	0	1	1090	0
chr2	62248723	62250775	REMC_LuminalBreast.87373	0	.	62248723	62250775	0	1	2052	0
chr2	62251162	62251873	B_Cells_Pritchard.2771691	0	.	62251162	62251873	0	1	711	0
chr2	62260782	62263785	B_Cells_Pritchard.2771715	0	.	62260782	62263785	0	1	3003	0
chr2	62261115	62272160	HepG2_Caltech_ENCODE.33619	0	+	62261115	62272160	0	2	46,1684	0,9361
chr2	62261281	62262088	B_cells_Cheung.172012	0	.	62261281	62262088	0	1	807	0
chr2	62263895	62268752	B_cells_Cheung.172016	0	-	62263895	62268752	0	2	316,1055	0,3802
chr2	62267746	62268585	REMC_LuminalBreast.87382	0	.	62267746	62268585	0	1	839	0
chr2	62267793	62269469	REMC_MyoepithelialBreast.81290	0	.	62267793	62269469	0	1	1676	0
chr2	62267892	62272156	H1_polyA+.102638	0	.	62267892	62272156	0	1	4264	0
chr2	62268818	62270266	B_cells_Cheung.172018	0	.	62268818	62270266	0	1	1448	0
chr2	62268825	62271329	REMC_LuminalBreast.87383	0	.	62268825	62271329	0	1	2504	0
chr2	62269880	62272160	HepG2_Caltech_ENCODE.33618	0	.	62269880	62272160	0	1	2280	0
chr2	62270345	62272133	B_cells_Cheung.172019	0	.	62270345	62272133	0	1	1788	0
chr2	62270778	62272149	melanoma_Garraway_short_term_cultures.61580	0	.	62270778	62272149	0	1	1371	0
chr2	62271419	62271773	liver_polyA+.116964	0	.	62271419	62271773	0	1	354	0
chr2	62272930	62274114	HepG2_Caltech_ENCODE.33625	0	.	62272930	62274114	0	1	1184	0
chr2	62272940	62274274	REMC_MyoepithelialBreast.81291	0	.	62272940	62274274	0	1	1334	0
chr2	62272963	62274099	B_Cells_Pritchard.2771725	0	+	62272963	62274099	0	1	1136	0
chr2	62272968	62273295	liver_polyA+.116966	0	.	62272968	62273295	0	1	327	0
chr2	62310901	62313636	B_cells_Cheung.172027	0	.	62310901	62313636	0	1	2735	0
chr2	62310924	62313526	H1_polyA+.102644	0	.	62310924	62313526	0	1	2602	0
chr2	62310925	62313422	HepG2_Caltech_ENCODE.33632	0	.	62310925	62313422	0	1	2497	0
chr2	62311248	62312444	REMC_BreastStem.44486	0	.	62311248	62312444	0	1	1196	0
chr2	62314269	62317667	B_cells_Cheung.172029	0	.	62314269	62317667	0	1	3398	0
chr2	62314274	62317597	B_Cells_Pritchard.2772051	0	.	62314274	62317597	0	1	3323	0
chr2	62319898	62322622	B_cells_Cheung.172033	0	.	62319898	62322622	0	1	2724	0
chr2	62319950	62322558	B_Cells_Pritchard.2772059	0	-	62319950	62322558	0	2	1094,103	0,2505
chr2	62320162	62321153	REMC_BreastStem.44487	0	.	62320162	62321153	0	1	991	0
chr2	62320390	62320957	H1_polyA+.102646	0	.	62320390	62320957	0	1	567	0
chr2	62323012	62326459	B_cells_Cheung.172035	0	.	62323012	62326459	0	1	3447	0
chr2	62323035	62323449	CD4_Plagnol_resting.57325	0	.	62323035	62323449	0	1	414	0
chr2	62326599	62327291	B_cells_Cheung.172036	0	.	62326599	62327291	0	1	692	0
chr2	62330216	62331240	B_cells_Cheung.172039	0	.	62330216	62331240	0	1	1024	0
chr2	62335278	62336360	B_cells_Cheung.172043	0	.	62335278	62336360	0	1	1082	0
chr2	62352962	62353730	B_cells_Cheung.172059	0	.	62352962	62353730	0	1	768	0
chr2	62356896	62359135	B_cells_Cheung.172063	0	.	62356896	62359135	0	1	2239	0
chr2	62358895	62360814	REMC_LuminalBreast.87412	0	.	62358895	62360814	0	1	1919	0
chr2	62360961	62364220	REMC_LuminalBreast.87413	0	.	62360961	62364220	0	1	3259	0
chr2	62365164	62366231	B_Cells_Pritchard.2772171	0	.	62365164	62366231	0	1	1067	0
chr2	62365176	62366801	B_cells_Cheung.172069	0	.	62365176	62366801	0	1	1625	0
chr2	62365193	62365639	REMC_LuminalBreast.87414	0	.	62365193	62365639	0	1	446	0
chr2	62368179	62369015	B_cells_Cheung.172072	0	.	62368179	62369015	0	1	836	0
chr2	62371488	62372492	REMC_LuminalBreast.87416	0	.	62371488	62372492	0	1	1004	0
chr2	62371559	62373279	B_cells_Cheung.172076	0	.	62371559	62373279	0	1	1720	0
chr2	62373448	62375081	B_cells_Cheung.172077	0	.	62373448	62375081	0	1	1633	0
chr2	62373486	62375070	B_Cells_Pritchard.2772205	0	.	62373486	62375070	0	1	1584	0
chr2	62376648	62377778	B_cells_Cheung.172079	0	.	62376648	62377778	0	1	1130	0
chr2	62376713	62377575	B_Cells_Pritchard.2772213	0	.	62376713	62377575	0	1	862	0
chr2	62376887	62378678	K562.40551	0	.	62376887	62378678	0	1	1791	0
chr2	62378805	62380311	K562.40552	0	.	62378805	62380311	0	1	1506	0
chr2	62381457	62382033	B_cells_Cheung.172083	0	.	62381457	62382033	0	1	576	0
chr2	62382808	62383984	REMC_LuminalBreast.87420	0	.	62382808	62383984	0	1	1176	0
chr2	62384319	62385184	REMC_MyoepithelialBreast.81282	0	.	62384319	62385184	0	1	865	0
chr2	62384652	62386924	B_Cells_Pritchard.2772243	0	.	62384652	62386924	0	1	2272	0
chr2	62386216	62386896	B_cells_Cheung.172088	0	.	62386216	62386896	0	1	680	0
chr2	62388508	62391802	REMC_LuminalBreast.87424	0	.	62388508	62391802	0	1	3294	0
chr2	62396037	62398038	REMC_LuminalBreast.87427	0	.	62396037	62398038	0	1	2001	0
chr2	62398958	62402545	B_cells_Cheung.172098	0	.	62398958	62402545	0	1	3587	0
chr2	62401104	62401795	REMC_MyoepithelialBreast.81287	0	.	62401104	62401795	0	1	691	0
chr2	62401154	62401891	H1_polyA+.102650	0	.	62401154	62401891	0	1	737	0
chr2	62401174	62402314	REMC_LuminalBreast.87429	0	.	62401174	62402314	0	1	1140	0
chr2	62404045	62405641	B_Cells_Pritchard.2772281	0	.	62404045	62405641	0	1	1596	0
chr2	62404353	62406069	B_cells_Cheung.172102	0	.	62404353	62406069	0	1	1716	0
chr2	62404380	62405669	REMC_LuminalBreast.87432	0	.	62404380	62405669	0	1	1289	0
chr2	62404902	62405476	K562.40560	0	.	62404902	62405476	0	1	574	0
chr2	62421396	62423322	REMC_LuminalBreast.87437	0	.	62421396	62423322	0	1	1926	0
chr2	62421433	62422350	K562.40566	0	.	62421433	62422350	0	1	917	0
chr2	62421554	62422121	B_cells_Cheung.172117	0	.	62421554	62422121	0	1	567	0
chr2	62441953	62443173	REMC_LuminalBreast.87441	0	.	62441953	62443173	0	1	1220	0
chr2	62442250	62443450	B_cells_Cheung.172127	0	.	62442250	62443450	0	1	1200	0
chr2	62443255	62444128	REMC_LuminalBreast.87442	0	.	62443255	62444128	0	1	873	0
chr2	62446738	62447866	B_Cells_Pritchard.2772389	0	.	62446738	62447866	0	1	1128	0
chr2	62449697	62451914	B_Cells_Pritchard.2772397	0	.	62449697	62451914	0	1	2217	0
chr2	62449762	62451914	B_cells_Cheung.172134	0	.	62449762	62451914	0	1	2152	0
chr2	62450363	62451192	K562.40572	0	.	62450363	62451192	0	1	829	0
chr2	62456915	62458328	B_cells_Cheung.172143	0	.	62456915	62458328	0	1	1413	0
chr2	62459435	62460420	B_cells_Cheung.172146	0	.	62459435	62460420	0	1	985	0
chr2	62461957	62463612	REMC_LuminalBreast.87448	0	.	62461957	62463612	0	1	1655	0
chr2	62462055	62463312	B_cells_Cheung.172149	0	.	62462055	62463312	0	1	1257	0
chr2	62473623	62533267	B_cells_Cheung.172157	0	+	62473623	62533267	0	6	115,397,905,24,1360,257	0,46688,48749,51017,56856,59387
chr2	62475153	62476263	REMC_LuminalBreast.87450	0	.	62475153	62476263	0	1	1110	0
chr2	62475755	62476118	B_cells_Cheung.172162	0	.	62475755	62476118	0	1	363	0
chr2	62483821	62484628	B_cells_Cheung.172169	0	.	62483821	62484628	0	1	807	0
chr2	62486977	62491975	B_cells_Cheung.172173	0	.	62486977	62491975	0	1	4998	0
chr2	62487866	62489819	B_Cells_Pritchard.2772563	0	+	62487866	62489819	0	1	1953	0
chr2	62488541	62490351	K562.40581	0	.	62488541	62490351	0	1	1810	0
chr2	62492342	62492902	B_cells_Cheung.172174	0	.	62492342	62492902	0	1	560	0
chr2	62499685	62502912	B_Cells_Pritchard.2772583	0	+	62499685	62502912	0	2	895,379	0,2848
chr2	62500099	62500940	B_cells_Cheung.172188	0	.	62500099	62500940	0	1	841	0
chr2	62501037	62501609	B_cells_Cheung.172189	0	.	62501037	62501609	0	1	572	0
chr2	62501204	62502129	REMC_LuminalBreast.87453	0	.	62501204	62502129	0	1	925	0
chr2	62505983	62508890	B_Cells_Pritchard.2772607	0	.	62505983	62508890	0	1	2907	0
chr2	62506911	62508236	K562.40591	0	.	62506911	62508236	0	1	1325	0
chr2	62507151	62507582	A549_Myers.77894	0	.	62507151	62507582	0	1	431	0
chr2	62520880	62524950	B_Cells_Pritchard.2772649	0	.	62520880	62524950	0	1	4070	0
chr2	62522144	62523776	B_cells_Cheung.172158	0	.	62522144	62523776	0	1	1632	0
chr2	62522329	62533257	REMC_BreastStem.44501	0	+	62522329	62533257	0	4	108,1232,152,247	0,6756,8178,10681
chr2	62522335	62523268	REMC_MyoepithelialBreast.81327	0	.	62522335	62523268	0	1	933	0
chr2	62523963	62524889	B_cells_Cheung.172159	0	.	62523963	62524889	0	1	926	0
chr2	62528060	62530327	B_Cells_Pritchard.2772661	0	.	62528060	62530327	0	1	2267	0
chr2	62528315	62530654	REMC_MyoepithelialBreast.81328	0	.	62528315	62530654	0	1	2339	0
chr2	62528565	62530357	B_cells_Cheung.172210	0	.	62528565	62530357	0	1	1792	0
chr2	62529183	62529542	K562.40599	0	.	62529183	62529542	0	1	359	0
chr2	62530427	62531905	B_Cells_Pritchard.2772663	0	.	62530427	62531905	0	1	1478	0
chr2	62534589	62535237	B_cells_Cheung.172214	0	.	62534589	62535237	0	1	648	0
chr2	62534596	62535316	B_Cells_Pritchard.2772669	0	.	62534596	62535316	0	1	720	0
chr2	62534760	62535186	A549_Myers.77897	0	.	62534760	62535186	0	1	426	0
chr2	62537487	62538104	A549_Myers.77899	0	.	62537487	62538104	0	1	617	0
chr2	62537642	62538526	B_Cells_Pritchard.2772677	0	.	62537642	62538526	0	1	884	0
chr2	62537798	62538115	B_cells_Cheung.172217	0	.	62537798	62538115	0	1	317	0
chr2	62538653	62540375	B_Cells_Pritchard.2772679	0	.	62538653	62540375	0	1	1722	0
chr2	62538827	62539909	B_cells_Cheung.172219	0	.	62538827	62539909	0	1	1082	0
chr2	62540102	62541683	REMC_LuminalBreast.87455	0	.	62540102	62541683	0	1	1581	0
chr2	62540652	62541208	B_cells_Cheung.172220	0	.	62540652	62541208	0	1	556	0
chr2	62540836	62544682	B_Cells_Pritchard.2772683	0	+	62540836	62544682	0	2	3610,205	0,3641
chr2	62541298	62544685	B_cells_Cheung.172221	0	.	62541298	62544685	0	1	3387	0
chr2	62543449	62544682	HepG2_Caltech_ENCODE.33637	0	.	62543449	62544682	0	1	1233	0
chr2	62543624	62544707	REMC_MyoepithelialBreast.81329	0	.	62543624	62544707	0	1	1083	0
chr2	62547113	62547597	A549_Myers.77904	0	.	62547113	62547597	0	1	484	0
chr2	62616594	62616925	A549_Myers.77911	0	.	62616594	62616925	0	1	331	0
chr2	62651718	62652115	A549_Myers.77914	0	.	62651718	62652115	0	1	397	0
chr2	62669291	62670030	H1_polyA+.102669	0	.	62669291	62670030	0	1	739	0
chr2	63129024	63129574	A549_Myers.77942	0	.	63129024	63129574	0	1	550	0
chr2	64106465	64109189	REMC_LuminalBreast.87698	0	.	64106465	64109189	0	1	2724	0
chr2	64112601	64122095	REMC_LuminalBreast.87700	0	.	64112601	64122095	0	1	9494	0
chr2	64119418	64121655	REMC_MyoepithelialBreast.81433	0	.	64119418	64121655	0	1	2237	0
chr2	64123077	64128043	REMC_LuminalBreast.87701	0	.	64123077	64128043	0	1	4966	0
chr2	64129902	64133948	REMC_LuminalBreast.87703	0	.	64129902	64133948	0	1	4046	0
chr2	64131528	64133480	REMC_MyoepithelialBreast.81438	0	.	64131528	64133480	0	1	1952	0
chr2	64150505	64150913	B_cells_Cheung.172565	0	.	64150505	64150913	0	1	408	0
chr2	64160244	64169593	REMC_MyoepithelialBreast.81453	0	.	64160244	64169593	0	1	9349	0
chr2	64162691	64163524	MIP101.61505	0	.	64162691	64163524	0	1	833	0
chr2	64166692	64167732	MIP101.61506	0	.	64166692	64167732	0	1	1040	0
chr2	64166853	64169606	B_Cells_Pritchard.2777717	0	.	64166853	64169606	0	1	2753	0
chr2	64167158	64168080	H1_polyA+.102801	0	.	64167158	64168080	0	1	922	0
chr2	64167162	64168492	REMC_LuminalBreast.87869	0	.	64167162	64168492	0	1	1330	0
chr2	64246116	64247616	B_cells_Cheung.172926	0	.	64246116	64247616	0	1	1500	0
chr2	64247391	64249111	B_Cells_Pritchard.2777817	0	-	64247391	64249111	0	1	1720	0
chr2	64261506	64262335	B_Cells_Pritchard.2777861	0	.	64261506	64262335	0	1	829	0
chr2	64263584	64264743	B_cells_Cheung.172935	0	.	64263584	64264743	0	1	1159	0
chr2	64263918	64264423	B_Cells_Pritchard.2777869	0	.	64263918	64264423	0	1	505	0
chr2	64265708	64286123	HIT000025625	0	-	64265708	64286123	0	6	672,116,103,131,96,2196	0,3946,7285,16157,17922,18219
chr2	64265715	64286123	ENST00000431020	0	-	64265715	64286123	0	6	665,116,103,131,96,2196	0,3939,7278,16150,17915,18212
chr2	64265716	64286123	NR_033837	0	-	64265716	64286123	0	6	664,116,103,131,96,2196	0,3938,7277,16149,17914,18211
chr2	64265717	64286123	Rinn_00002666	0	-	64265717	64286123	0	6	663,117,104,132,97,2197	0,3936,7275,16147,17912,18209
chr2	64270521	64273951	B_cells_Cheung.172937	0	.	64270521	64273951	0	1	3430	0
chr2	64274107	64276141	B_cells_Cheung.172938	0	.	64274107	64276141	0	1	2034	0
chr2	64285858	64286738	H1_polyA+.102815	0	.	64285858	64286738	0	1	880	0
chr2	64287250	64288189	H1_polyA+.102816	0	.	64287250	64288189	0	1	939	0
chr2	64288289	64294150	H1_polyA+.102818	0	.	64288289	64294150	0	1	5861	0
chr2	64289323	64292911	REMC_LuminalBreast.87749	0	.	64289323	64292911	0	1	3588	0
chr2	64290377	64290765	B_cells_Cheung.172944	0	.	64290377	64290765	0	1	388	0
chr2	64290945	64294092	B_cells_Cheung.172945	0	.	64290945	64294092	0	1	3147	0
chr2	64291474	64292087	H9_polyA+.40891	0	.	64291474	64292087	0	1	613	0
chr2	64291823	64292659	H1_rRNA-depleted_UCSD_REMC.77470	0	.	64291823	64292659	0	1	836	0
chr2	64296486	64299375	H1_polyA+.102819	0	.	64296486	64299375	0	1	2889	0
chr2	64301055	64301757	H9_polyA+.40897	0	.	64301055	64301757	0	1	702	0
chr2	64315453	64317211	H1_polyA+.102820	0	.	64315453	64317211	0	1	1758	0
chr2	64315471	64316949	B_Cells_Pritchard.2778009	0	.	64315471	64316949	0	1	1478	0
chr2	64322183	64322904	H1_polyA+.102825	0	.	64322183	64322904	0	1	721	0
chr2	64322701	64328122	B_Cells_Pritchard.2778029	0	.	64322701	64328122	0	1	5421	0
chr2	64325349	64326131	H9_polyA+.40906	0	.	64325349	64326131	0	1	782	0
chr2	64330156	64332912	prostate_carcinoma.88343	0	.	64330156	64332912	0	1	2756	0
chr2	64333667	64334385	H9_polyA+.40899	0	.	64333667	64334385	0	1	718	0
chr2	64345398	64346711	REMC_LuminalBreast.87752	0	.	64345398	64346711	0	1	1313	0
chr2	64346223	64347222	H9_polyA-_Chen.13039	0	.	64346223	64347222	0	1	999	0
chr2	64346569	64347084	H9_polyA+.40915	0	.	64346569	64347084	0	1	515	0
chr2	64355926	64359662	H1_polyA+.102828	0	.	64355926	64359662	0	1	3736	0
chr2	64358654	64359430	B_Cells_Pritchard.2778071	0	.	64358654	64359430	0	1	776	0
chr2	64362833	64367894	H1_polyA+.102831	0	.	64362833	64367894	0	1	5061	0
chr2	64363734	64364473	H9_polyA+.40925	0	.	64363734	64364473	0	1	739	0
chr2	64363769	64366736	B_Cells_Pritchard.2778091	0	.	64363769	64366736	0	1	2967	0
chr2	64364015	64364423	H1_rRNA-depleted_UCSD_REMC.77506	0	.	64364015	64364423	0	1	408	0
chr2	64364755	64366116	H9_polyA+.40926	0	.	64364755	64366116	0	1	1361	0
chr2	64364836	64365343	B_cells_Cheung.172770	0	.	64364836	64365343	0	1	507	0
chr2	64365015	64365367	H1_rRNA-depleted_UCSD_REMC.77507	0	.	64365015	64365367	0	1	352	0
chr2	64367894	64371169	H1_polyA+.102832	0	.	64367894	64371169	0	1	3275	0
chr2	64370703	64371152	H9_polyA+.40931	0	.	64370703	64371152	0	1	449	0
chr2	64371316	64372483	H9_polyA+.40932	0	.	64371316	64372483	0	1	1167	0
chr2	64371376	64373476	H1_polyA+.102833	0	.	64371376	64373476	0	1	2100	0
chr2	64423494	64424705	H1_polyA+.102840	0	.	64423494	64424705	0	1	1211	0
chr2	64425072	64425524	B_cells_Cheung.172776	0	.	64425072	64425524	0	1	452	0
chr2	64425093	64425623	B_Cells_Pritchard.2778275	0	.	64425093	64425623	0	1	530	0
chr2	64425122	64425507	prostate_normal.53237	0	.	64425122	64425507	0	1	385	0
chr2	64456982	64466876	REMC_LuminalBreast.87757	0	.	64456982	64466876	0	1	9894	0
chr2	64457343	64476648	REMC_MyoepithelialBreast.81526	0	.	64457343	64476648	0	1	19305	0
chr2	64459244	64464806	prostate_carcinoma.88351	0	.	64459244	64464806	0	1	5562	0
chr2	64462047	64464850	B_cells_Cheung.172780	0	.	64462047	64464850	0	1	2803	0
chr2	64462201	64463875	prostate_normal.53242	0	.	64462201	64463875	0	1	1674	0
chr2	64462388	64464728	B_Cells_Pritchard.2778393	0	.	64462388	64464728	0	1	2340	0
chr2	64471475	64475985	H1_polyA+.102848	0	.	64471475	64475985	0	1	4510	0
chr2	64471681	64475102	B_cells_Cheung.172790	0	.	64471681	64475102	0	1	3421	0
chr2	64471685	64475845	prostate_carcinoma.88355	0	.	64471685	64475845	0	1	4160	0
chr2	64472290	64473309	HepG2_Caltech_ENCODE.33741	0	.	64472290	64473309	0	1	1019	0
chr2	64472331	64475854	B_Cells_Pritchard.2778419	0	.	64472331	64475854	0	1	3523	0
chr2	64476753	64477550	B_Cells_Pritchard.2778423	0	.	64476753	64477550	0	1	797	0
chr2	64476860	64477241	B_cells_Cheung.172794	0	.	64476860	64477241	0	1	381	0
chr2	64480402	64480789	B_cells_Cheung.172797	0	.	64480402	64480789	0	1	387	0
chr2	64481105	64481454	B_cells_Cheung.172798	0	.	64481105	64481454	0	1	349	0
chr2	64481142	64482105	prostate_carcinoma.88361	0	.	64481142	64482105	0	1	963	0
chr2	64482526	64484875	REMC_LuminalBreast.87761	0	.	64482526	64484875	0	1	2349	0
chr2	64482558	64483998	REMC_MyoepithelialBreast.81527	0	.	64482558	64483998	0	1	1440	0
chr2	64486609	64489424	REMC_MyoepithelialBreast.81529	0	.	64486609	64489424	0	1	2815	0
chr2	64491971	64492572	B_cells_Cheung.172804	0	.	64491971	64492572	0	1	601	0
chr2	64492495	64493263	H1_polyA+.102850	0	.	64492495	64493263	0	1	768	0
chr2	64495772	64498274	B_cells_Cheung.172806	0	.	64495772	64498274	0	1	2502	0
chr2	64499265	64500825	H1_polyA+.102852	0	.	64499265	64500825	0	1	1560	0
chr2	64502943	64503885	B_cells_Cheung.172810	0	.	64502943	64503885	0	1	942	0
chr2	64503644	64505128	REMC_BreastStem.44612	0	.	64503644	64505128	0	1	1484	0
chr2	64503644	64505130	H1_polyA+.102853	0	.	64503644	64505130	0	1	1486	0
chr2	64503755	64508573	REMC_MyoepithelialBreast.81532	0	.	64503755	64508573	0	1	4818	0
chr2	64504633	64506045	B_Cells_Pritchard.2778583	0	.	64504633	64506045	0	1	1412	0
chr2	64504753	64505950	prostate_carcinoma.88362	0	.	64504753	64505950	0	1	1197	0
chr2	64507820	64508585	H1_polyA+.102857	0	.	64507820	64508585	0	1	765	0
chr2	64507833	64508560	B_cells_Cheung.172813	0	.	64507833	64508560	0	1	727	0
chr2	64511002	64511377	B_Cells_Pritchard.2778597	0	.	64511002	64511377	0	1	375	0
chr2	64522762	64523558	B_Cells_Pritchard.2778639	0	.	64522762	64523558	0	1	796	0
chr2	64522769	64524268	B_cells_Cheung.172821	0	.	64522769	64524268	0	1	1499	0
chr2	64522791	64524616	H1_polyA+.102862	0	.	64522791	64524616	0	1	1825	0
chr2	64522821	64525089	prostate_carcinoma.88364	0	.	64522821	64525089	0	1	2268	0
chr2	64522902	64523233	H1_rRNA-depleted_UCSD_REMC.77519	0	.	64522902	64523233	0	1	331	0
chr2	64524033	64525393	REMC_BreastStem.44607	0	.	64524033	64525393	0	1	1360	0
chr2	64524709	64525277	B_cells_Cheung.172822	0	.	64524709	64525277	0	1	568	0
chr2	64525648	64526588	B_cells_Cheung.172823	0	.	64525648	64526588	0	1	940	0
chr2	64526121	64526599	B_Cells_Pritchard.2778647	0	.	64526121	64526599	0	1	478	0
chr2	64528767	64529833	REMC_BreastStem.44618	0	.	64528767	64529833	0	1	1066	0
chr2	64548146	64549292	REMC_LuminalBreast.87763	0	.	64548146	64549292	0	1	1146	0
chr2	64559596	64560162	prostate_normal.53248	0	.	64559596	64560162	0	1	566	0
chr2	64560869	64586320	prostate_normal.53251	0	-	64560869	64586320	0	3	4298,732,1478	0,21627,23973
chr2	64561965	64581298	pHIT000099709	0	+	64561965	64581298	0	3	98,106,142	0,6864,19191
chr2	64565722	64571539	prostate_carcinoma.88371	0	.	64565722	64571539	0	1	5817	0
chr2	64570628	64571072	prostate_normal.53253	0	.	64570628	64571072	0	1	444	0
chr2	64678347	64681268	REMC_MyoepithelialBreast.81537	0	.	64678347	64681268	0	1	2921	0
chr2	64679263	64681367	B_Cells_Pritchard.2779009	0	.	64679263	64681367	0	1	2104	0
chr2	64681367	64685819	REMC_MyoepithelialBreast.81538	0	.	64681367	64685819	0	1	4452	0
chr2	64681622	64682797	B_Cells_Pritchard.2779011	0	.	64681622	64682797	0	1	1175	0
chr2	64681632	64682637	B_cells_Cheung.172888	0	.	64681632	64682637	0	1	1005	0
chr2	64684797	64686318	B_cells_Cheung.172893	0	.	64684797	64686318	0	1	1521	0
chr2	64685917	64689422	REMC_MyoepithelialBreast.81539	0	.	64685917	64689422	0	1	3505	0
chr2	64686563	64689255	B_cells_Cheung.172890	0	.	64686563	64689255	0	1	2692	0
chr2	64687547	64689255	B_Cells_Pritchard.2779015	0	.	64687547	64689255	0	1	1708	0
chr2	64687611	64696637	Rinn_00002908	0	+	64687611	64696637	0	4	208,321,114,747	0,5791,6203,8279
chr2	64687995	64697134	HIT000096636	0	+	64687995	64697134	0	4	63,320,113,1243	0,5408,5820,7896
chr2	64687998	64697120	ENST00000417695	0	+	64687998	64697120	0	4	60,320,113,1229	0,5405,5817,7893
chr2	64688546	64689422	REMC_BreastStem.44623	0	.	64688546	64689422	0	1	876	0
chr2	64689518	64691014	B_cells_Cheung.172894	0	.	64689518	64691014	0	1	1496	0
chr2	64689593	64691001	B_Cells_Pritchard.2779017	0	.	64689593	64691001	0	1	1408	0
chr2	64689627	64690286	A549_Myers.78007	0	.	64689627	64690286	0	1	659	0
chr2	64690229	64690893	K562.40640	0	.	64690229	64690893	0	1	664	0
chr2	64697200	64699508	B_Cells_Pritchard.2779051	0	.	64697200	64699508	0	1	2308	0
chr2	64698500	64699630	B_cells_Cheung.172902	0	.	64698500	64699630	0	1	1130	0
chr2	64698558	64702610	REMC_BreastStem.44639	0	.	64698558	64702610	0	1	4052	0
chr2	64703171	64703638	B_Cells_Pritchard.2779063	0	.	64703171	64703638	0	1	467	0
chr2	64706381	64707329	B_Cells_Pritchard.2779079	0	.	64706381	64707329	0	1	948	0
chr2	64706473	64707310	REMC_BreastStem.44641	0	.	64706473	64707310	0	1	837	0
chr2	64706929	64707317	B_cells_Cheung.172904	0	.	64706929	64707317	0	1	388	0
chr2	64707617	64708071	B_Cells_Pritchard.2779081	0	.	64707617	64708071	0	1	454	0
chr2	64707620	64708251	B_cells_Cheung.172905	0	.	64707620	64708251	0	1	631	0
chr2	64710113	64710447	A549_Myers.78011	0	.	64710113	64710447	0	1	334	0
chr2	64832012	64833145	B_cells_Cheung.172959	0	.	64832012	64833145	0	1	1133	0
chr2	64832128	64833146	REMC_LuminalBreast.87824	0	.	64832128	64833146	0	1	1018	0
chr2	64832313	64833106	REMC_MyoepithelialBreast.81546	0	.	64832313	64833106	0	1	793	0
chr2	64848035	64850500	B_cells_Cheung.174379	0	.	64848035	64850500	0	1	2465	0
chr2	64848475	64849041	A549_Myers.78023	0	.	64848475	64849041	0	1	566	0
chr2	64848548	64849416	B_Cells_Pritchard.2779501	0	-	64848548	64849416	0	1	868	0
chr2	64848699	64849531	REMC_BreastStem.44626	0	.	64848699	64849531	0	1	832	0
chr2	64848706	64849996	REMC_MyoepithelialBreast.81547	0	.	64848706	64849996	0	1	1290	0
chr2	64848885	64849822	REMC_LuminalBreast.87825	0	.	64848885	64849822	0	1	937	0
chr2	64869215	64869919	B_cells_Cheung.174383	0	.	64869215	64869919	0	1	704	0
chr2	64876216	64877342	B_Cells_Pritchard.2779665	0	.	64876216	64877342	0	1	1126	0
chr2	64876487	64876886	B_cells_Cheung.174386	0	.	64876487	64876886	0	1	399	0
chr2	64878995	64879733	B_Cells_Pritchard.2779671	0	.	64878995	64879733	0	1	738	0
chr2	64894180	64894490	B_Cells_Pritchard.2779739	0	.	64894180	64894490	0	1	310	0
chr2	64900076	64900439	B_cells_Cheung.174396	0	.	64900076	64900439	0	1	363	0
chr2	64909071	64909702	B_cells_Cheung.174401	0	.	64909071	64909702	0	1	631	0
chr2	64915715	64916344	B_cells_Cheung.174405	0	.	64915715	64916344	0	1	629	0
chr2	64916448	64917289	B_cells_Cheung.174406	0	.	64916448	64917289	0	1	841	0
chr2	64917520	64918315	B_cells_Cheung.174407	0	.	64917520	64918315	0	1	795	0
chr2	64926879	64930511	B_Cells_Pritchard.2779909	0	.	64926879	64930511	0	1	3632	0
chr2	64931139	64937054	B_Cells_Pritchard.2779911	0	-	64931139	64937054	0	3	583,1073,546	0,4163,5369
chr2	64935237	64937105	B_cells_Cheung.174414	0	.	64935237	64937105	0	1	1868	0
chr2	64937289	64972506	B_Cells_Pritchard.2780055	0	-	64937289	64972506	0	15	7070,6041,57,78,803,73,1801,292,902,419,5555,674,3824,328,1047	0,7999,14040,14731,14816,15937,16188,17989,19339,20658,21178,27642,28451,32299,34170
chr2	64937289	64969916	B_Cells_Pritchard.2780053	0	+	64937289	64969916	0	5	15496,86,5272,181,4000	0,21178,21474,27655,28627
chr2	64938259	64939171	H1_polyA+.102874	0	.	64938259	64939171	0	1	912	0
chr2	64939933	64940796	A549_Myers.78028	0	.	64939933	64940796	0	1	863	0
chr2	64944050	64945691	REMC_LuminalBreast.87826	0	.	64944050	64945691	0	1	1641	0
chr2	64945685	64946148	A549_Myers.78030	0	.	64945685	64946148	0	1	463	0
chr2	64964391	64972047	B_cells_Cheung.174374	0	.	64964391	64972047	0	1	7656	0
chr2	64968092	64970638	HIT000045650	0	-	64968092	64970638	0	1	2546	0
chr2	64970005	64971373	B_Cells_Pritchard.2780069	0	-	64970005	64971373	0	1	1368	0
chr2	64972623	64973095	B_cells_Cheung.174416	0	.	64972623	64973095	0	1	472	0
chr2	64972626	64974588	B_Cells_Pritchard.2780091	0	+	64972626	64974588	0	3	414,43,273	0,1355,1689
chr2	64982476	64985775	Rinn_00003305	0	-	64982476	64985775	0	2	2782,148	0,3151
chr2	64982477	64985775	ENST00000449259	0	-	64982477	64985775	0	2	2781,147	0,3151
chr2	64986037	64986456	A549_Myers.78034	0	.	64986037	64986456	0	1	419	0
chr2	65001022	65006956	B_cells_Cheung.174376	0	.	65001022	65006956	0	1	5934	0
chr2	65006071	65006542	prostate_carcinoma.88433	0	.	65006071	65006542	0	1	471	0
chr2	65017812	65018719	H1_polyA+.102878	0	.	65017812	65018719	0	1	907	0
chr2	65018099	65019077	B_Cells_Pritchard.2779935	0	-	65018099	65019077	0	1	978	0
chr2	65024041	65024698	B_cells_Cheung.172968	0	.	65024041	65024698	0	1	657	0
chr2	65024499	65027781	B_Cells_Pritchard.2779947	0	.	65024499	65027781	0	1	3282	0
chr2	65031009	65032551	H1_polyA+.102885	0	-	65031009	65032551	0	2	177,653	0,889
chr2	65032850	65035490	H1_polyA+.102880	0	.	65032850	65035490	0	1	2640	0
chr2	65042990	65043293	HepG2_Caltech_ENCODE.33762	0	.	65042990	65043293	0	1	303	0
chr2	65043330	65044289	REMC_LuminalBreast.87832	0	.	65043330	65044289	0	1	959	0
chr2	65046169	65048476	B_cells_Cheung.172985	0	.	65046169	65048476	0	1	2307	0
chr2	65054109	65057813	B_cells_Cheung.172991	0	.	65054109	65057813	0	1	3704	0
chr2	65055357	65057787	REMC_LuminalBreast.87836	0	.	65055357	65057787	0	1	2430	0
chr2	65056676	65057772	B_Cells_Pritchard.2780035	0	.	65056676	65057772	0	1	1096	0
chr2	65061957	65063980	B_cells_Cheung.172996	0	.	65061957	65063980	0	1	2023	0
chr2	65061959	65063431	B_Cells_Pritchard.2780045	0	.	65061959	65063431	0	1	1472	0
chr2	65258063	65258834	B_Cells_Pritchard.2780385	0	.	65258063	65258834	0	1	771	0
chr2	65267162	65267495	B_cells_Cheung.173107	0	.	65267162	65267495	0	1	333	0
chr2	65289271	65290199	B_cells_Cheung.173119	0	.	65289271	65290199	0	1	928	0
chr2	65291111	65292067	B_cells_Cheung.173122	0	.	65291111	65292067	0	1	956	0
chr2	65299530	65300609	B_cells_Cheung.173128	0	.	65299530	65300609	0	1	1079	0
chr2	65304634	65305814	REMC_MyoepithelialBreast.81613	0	.	65304634	65305814	0	1	1180	0
chr2	65352948	65354634	B_cells_Cheung.173154	0	.	65352948	65354634	0	1	1686	0
chr2	65353135	65354616	REMC_MyoepithelialBreast.81633	0	.	65353135	65354616	0	1	1481	0
chr2	65361053	65362914	REMC_MyoepithelialBreast.81636	0	.	65361053	65362914	0	1	1861	0
chr2	65362392	65363524	REMC_LuminalBreast.87882	0	.	65362392	65363524	0	1	1132	0
chr2	65370211	65379381	REMC_MyoepithelialBreast.81639	0	.	65370211	65379381	0	1	9170	0
chr2	65371836	65376509	REMC_BreastStem.44668	0	.	65371836	65376509	0	1	4673	0
chr2	65371847	65376387	melanoma_Garraway_short_term_cultures.61784	0	.	65371847	65376387	0	1	4540	0
chr2	65373555	65376372	REMC_LuminalBreast.87890	0	.	65373555	65376372	0	1	2817	0
chr2	65374148	65374508	B_cells_Cheung.173165	0	.	65374148	65374508	0	1	360	0
chr2	65374788	65376391	B_cells_Cheung.173166	0	.	65374788	65376391	0	1	1603	0
chr2	65375298	65376391	B_Cells_Pritchard.2780423	0	.	65375298	65376391	0	1	1093	0
chr2	65378196	65379263	melanoma_Garraway_short_term_cultures.61786	0	.	65378196	65379263	0	1	1067	0
chr2	65378296	65379283	B_cells_Cheung.173169	0	.	65378296	65379283	0	1	987	0
chr2	65378315	65379298	prostate_carcinoma.88484	0	.	65378315	65379298	0	1	983	0
chr2	65378317	65379317	REMC_BreastStem.44670	0	.	65378317	65379317	0	1	1000	0
chr2	65378366	65379385	REMC_LuminalBreast.87892	0	.	65378366	65379385	0	1	1019	0
chr2	65378572	65379276	B_Cells_Pritchard.2780431	0	.	65378572	65379276	0	1	704	0
chr2	65379481	65384910	REMC_MyoepithelialBreast.81640	0	.	65379481	65384910	0	1	5429	0
chr2	65379821	65384934	REMC_BreastStem.44671	0	.	65379821	65384934	0	1	5113	0
chr2	65379869	65383342	B_cells_Cheung.173171	0	.	65379869	65383342	0	1	3473	0
chr2	65379869	65384023	melanoma_Garraway_short_term_cultures.61787	0	.	65379869	65384023	0	1	4154	0
chr2	65379873	65381634	REMC_LuminalBreast.87893	0	.	65379873	65381634	0	1	1761	0
chr2	65380618	65381622	B_Cells_Pritchard.2780437	0	.	65380618	65381622	0	1	1004	0
chr2	65381768	65383976	REMC_LuminalBreast.87894	0	.	65381768	65383976	0	1	2208	0
chr2	65388282	65389030	MDAMB231_Thompson.20005	0	.	65388282	65389030	0	1	748	0
chr2	65388379	65389029	liver_polyA+.117455	0	.	65388379	65389029	0	1	650	0
chr2	65388599	65389025	A549_Myers.78071	0	.	65388599	65389025	0	1	426	0
chr2	65522572	65522875	testes_Burge.48343	0	.	65522572	65522875	0	1	303	0
chr2	65584363	65585951	melanoma_Garraway_short_term_cultures.61805	0	.	65584363	65585951	0	1	1588	0
chr2	65584453	65585221	K562.40717	0	.	65584453	65585221	0	1	768	0
chr2	65627720	65631417	K562.40724	0	.	65627720	65631417	0	1	3697	0
chr2	65627766	65628802	prostate_carcinoma.88513	0	.	65627766	65628802	0	1	1036	0
chr2	65631666	65632004	K562.40725	0	.	65631666	65632004	0	1	338	0
chr2	65670186	65720815	HIT000024354	0	-	65670186	65720815	0	4	271,133,1206,63	0,1356,11608,50566
chr2	65670202	65720815	Rinn_00003308	0	-	65670202	65720815	0	4	255,134,1207,64	0,1339,11591,50549
chr2	65670203	65720815	ENST00000420724	0	-	65670203	65720815	0	4	254,133,1206,63	0,1339,11591,50549
chr2	65703204	65705243	prostate_carcinoma.88517	0	.	65703204	65705243	0	1	2039	0
chr2	65761550	65782449	ENST00000429449	0	+	65761550	65782449	0	5	110,178,204,83,2615	0,10869,15682,17967,18284
chr2	65870604	65871173	A549_Myers.78099	0	.	65870604	65871173	0	1	569	0
chr2	65870676	65874171	HIT000047995	0	+	65870676	65874171	0	1	3495	0
chr2	66320411	66321255	H1_polyA+.103239	0	.	66320411	66321255	0	1	844	0
chr2	66327576	66343676	H1_polyA+.103237	0	-	66327576	66343676	0	2	259,12262	0,3838
chr2	66330853	66359099	H1_polyA+.103238	0	+	66330853	66359099	0	2	18942,7158	0,21088
chr2	66334652	66335065	H1_rRNA-depleted_UCSD_REMC.77599	0	.	66334652	66335065	0	1	413	0
chr2	66360907	66390505	H1_polyA+.103246	0	.	66360907	66390505	0	1	29598	0
chr2	66414320	66416521	H1_polyA+.103215	0	.	66414320	66416521	0	1	2201	0
chr2	66452132	66453218	H1_polyA+.103223	0	.	66452132	66453218	0	1	1086	0
chr2	66463940	66507596	XR_015993	0	+	66463940	66507596	0	4	45,98,1555,1286	0,6093,7607,42370
chr2	66463940	66473678	XR_041503	0	+	66463940	66473678	0	3	45,98,2131	0,6093,7607
chr2	66463941	66473086	ENST00000428647	0	+	66463941	66473086	0	3	44,97,1538	0,6093,7607
chr2	66463941	66473095	HIT000096693	0	+	66463941	66473095	0	3	44,97,1547	0,6093,7607
chr2	66504950	66512479	prostate_carcinoma.88519	0	-	66504950	66512479	0	2	2848,24	0,7505
chr2	66505588	66507997	prostate_normal.53333	0	.	66505588	66507997	0	1	2409	0
chr2	66507036	66507373	brain_AmbionMAQC.40581	0	.	66507036	66507373	0	1	337	0
chr2	66507344	66507757	A549_Myers.78100	0	.	66507344	66507757	0	1	413	0
chr2	66656654	66657137	A549_Myers.78112	0	.	66656654	66657137	0	1	483	0
chr2	66773647	66784050	prostate_carcinoma.88534	0	.	66773647	66784050	0	1	10403	0
chr2	66775511	66777455	HIT000006649	0	-	66775511	66777455	0	1	1944	0
chr2	66775796	66776371	prostate_normal.53336	0	.	66775796	66776371	0	1	575	0
chr2	66811932	66812878	prostate_carcinoma.88540	0	.	66811932	66812878	0	1	946	0
chr2	67167008	67167461	melanoma_Garraway_short_term_cultures.61822	0	.	67167008	67167461	0	1	453	0
chr2	67167712	67169763	melanoma_Garraway_short_term_cultures.61823	0	.	67167712	67169763	0	1	2051	0
chr2	67176965	67177924	melanoma_Garraway_short_term_cultures.61825	0	.	67176965	67177924	0	1	959	0
chr2	67191025	67192350	melanoma_Garraway_short_term_cultures.61828	0	.	67191025	67192350	0	1	1325	0
chr2	67194508	67195821	melanoma_Garraway_short_term_cultures.61829	0	.	67194508	67195821	0	1	1313	0
chr2	67232045	67232610	melanoma_Garraway_short_term_cultures.61836	0	.	67232045	67232610	0	1	565	0
chr2	67232772	67233228	melanoma_Garraway_short_term_cultures.61837	0	.	67232772	67233228	0	1	456	0
chr2	67269631	67270128	H1_polyA+.103265	0	.	67269631	67270128	0	1	497	0
chr2	67280454	67281199	H1_polyA+.103268	0	.	67280454	67281199	0	1	745	0
chr2	67293605	67296541	melanoma_Garraway_short_term_cultures.61843	0	.	67293605	67296541	0	1	2936	0
chr2	67367952	67369240	prostate_carcinoma.88544	0	.	67367952	67369240	0	1	1288	0
chr2	67412455	67412924	H1_rRNA-depleted_UCSD_REMC.77638	0	.	67412455	67412924	0	1	469	0
chr2	67458114	67458801	prostate_carcinoma.88545	0	.	67458114	67458801	0	1	687	0
chr2	67462554	67464081	REMC_LuminalBreast.87914	0	.	67462554	67464081	0	1	1527	0
chr2	67468042	67468745	melanoma_Garraway_short_term_cultures.61858	0	.	67468042	67468745	0	1	703	0
chr2	67516655	67552308	pHIT000072658	0	-	67516655	67552308	0	7	11,81,99,35,98,192,57	0,2405,2576,22676,28887,34861,35596
chr2	67516655	67551708	pHIT000004271	0	-	67516655	67551708	0	6	11,81,99,35,98,192	0,2405,2576,22676,28887,34861
chr2	67529730	67530642	melanoma_Garraway_short_term_cultures.61865	0	.	67529730	67530642	0	1	912	0
chr2	67624355	67625363	melanoma_Garraway_short_term_cultures.61869	0	.	67624355	67625363	0	1	1008	0
chr2	67630854	67631800	melanoma_Garraway_short_term_cultures.61870	0	.	67630854	67631800	0	1	946	0
chr2	67752359	67753634	BT474_Burge_Thompson.31740	0	.	67752359	67753634	0	1	1275	0
chr2	67752470	67753649	B_Cells_Pritchard.2785397	0	.	67752470	67753649	0	1	1179	0
chr2	68193963	68194680	B_cells_Cheung.173312	0	.	68193963	68194680	0	1	717	0
chr2	68201330	68202421	B_cells_Cheung.173317	0	.	68201330	68202421	0	1	1091	0
chr2	68201336	68202383	B_Cells_Pritchard.2787223	0	-	68201336	68202383	0	1	1047	0
chr2	68201973	68202291	pHIT000004274	0	-	68201973	68202291	0	1	318	0
chr2	68203034	68203448	B_cells_Cheung.173318	0	.	68203034	68203448	0	1	414	0
chr2	68203111	68203427	A549_Myers.78132	0	.	68203111	68203427	0	1	316	0
chr2	68512155	68512655	A549_Myers.78155	0	.	68512155	68512655	0	1	500	0
chr2	68514141	68514589	A549_Myers.78156	0	.	68514141	68514589	0	1	448	0
chr2	68908710	68910369	CD4_Plagnol_resting.57507	0	.	68908710	68910369	0	1	1659	0
chr2	68909817	68910316	B_Cells_Pritchard.2788401	0	.	68909817	68910316	0	1	499	0
chr2	68917702	68918257	CD4_Plagnol_activated.59081	0	.	68917702	68918257	0	1	555	0
chr2	69344739	69345130	A549_Myers.78232	0	.	69344739	69345130	0	1	391	0
chr2	69352411	69353713	REMC_BreastStem.44751	0	.	69352411	69353713	0	1	1302	0
chr2	69358286	69361586	REMC_BreastStem.44753	0	.	69358286	69361586	0	1	3300	0
chr2	69370554	69373884	REMC_BreastStem.44759	0	.	69370554	69373884	0	1	3330	0
chr2	69373627	69378877	pHIT000004288	0	+	69373627	69378877	0	3	107,137,410	0,4042,4840
chr2	69377348	69378119	A549_Myers.78237	0	.	69377348	69378119	0	1	771	0
chr2	69377875	69379140	REMC_BreastStem.44779	0	.	69377875	69379140	0	1	1265	0
chr2	69378225	69378959	A549_Myers.78238	0	.	69378225	69378959	0	1	734	0
chr2	69380514	69380931	A549_Myers.78239	0	.	69380514	69380931	0	1	417	0
chr2	69385911	69387682	REMC_BreastStem.44856	0	.	69385911	69387682	0	1	1771	0
chr2	69387320	69388325	A549_Myers.78241	0	.	69387320	69388325	0	1	1005	0
chr2	69387903	69388749	prostate_normal.53503	0	.	69387903	69388749	0	1	846	0
chr2	69387903	69395731	prostate_normal.53502	0	+	69387903	69395731	0	2	805,53	0,7775
chr2	69393371	69394468	REMC_BreastStem.44858	0	.	69393371	69394468	0	1	1097	0
chr2	69469525	69470803	B_Cells_Pritchard.2789839	0	.	69469525	69470803	0	1	1278	0
chr2	69474036	69475297	REMC_LuminalBreast.88099	0	.	69474036	69475297	0	1	1261	0
chr2	69474135	69475093	B_cells_Cheung.173408	0	.	69474135	69475093	0	1	958	0
chr2	69525291	69526938	REMC_LuminalBreast.88105	0	.	69525291	69526938	0	1	1647	0
chr2	69526053	69526941	REMC_BreastStem.44787	0	.	69526053	69526941	0	1	888	0
chr2	69526295	69526929	H1_polyA+.103389	0	.	69526295	69526929	0	1	634	0
chr2	69527947	69528693	REMC_LuminalBreast.88107	0	.	69527947	69528693	0	1	746	0
chr2	69528804	69529821	REMC_BreastStem.44789	0	.	69528804	69529821	0	1	1017	0
chr2	69528805	69529770	REMC_LuminalBreast.88108	0	.	69528805	69529770	0	1	965	0
chr2	70196150	70197529	B_Cells_Pritchard.2791497	0	+	70196150	70197529	0	1	1379	0
chr2	70196187	70197195	B_cells_Cheung.173608	0	.	70196187	70197195	0	1	1008	0
chr2	70200432	70200850	B_cells_Cheung.173610	0	.	70200432	70200850	0	1	418	0
chr2	70202433	70205342	H1_polyA+.103480	0	.	70202433	70205342	0	1	2909	0
chr2	70202433	70205956	H1_polyA+.103479	0	-	70202433	70205956	0	2	2628,275	0,3248
chr2	70203184	70206616	REMC_MyoepithelialBreast.81907	0	.	70203184	70206616	0	1	3432	0
chr2	70203415	70205308	prostate_carcinoma.88872	0	.	70203415	70205308	0	1	1893	0
chr2	70203415	70206358	prostate_carcinoma.88870	0	+	70203415	70206358	0	2	881,40	0,2903
chr2	70203475	70204479	MIP101.61857	0	.	70203475	70204479	0	1	1004	0
chr2	70203480	70204703	REMC_LuminalBreast.88228	0	.	70203480	70204703	0	1	1223	0
chr2	70203536	70207474	B_cells_Cheung.173617	0	-	70203536	70207474	0	2	1525,1793	0,2145
chr2	70203536	70205357	B_cells_Cheung.173615	0	.	70203536	70205357	0	1	1821	0
chr2	70203591	70204343	A549_Myers.78385	0	.	70203591	70204343	0	1	752	0
chr2	70203591	70206922	B_Cells_Pritchard.2791583	0	-	70203591	70206922	0	3	1470,714,68	0,2062,3263
chr2	70203591	70206922	B_Cells_Pritchard.2791581	0	+	70203591	70206922	0	2	1762,1343	0,1988
chr2	70203596	70204334	prostate_normal.53492	0	.	70203596	70204334	0	1	738	0
chr2	70203597	70204748	brain_AmbionMAQC.40658	0	.	70203597	70204748	0	1	1151	0
chr2	70203650	70206098	MCF7_Burge_Thompson.29090	0	-	70203650	70206098	0	2	1411,417	0,2031
chr2	70203666	70203992	liver_polyA+.117986	0	.	70203666	70203992	0	1	326	0
chr2	70203794	70205011	melanoma_Garraway_short_term_cultures.62014	0	.	70203794	70205011	0	1	1217	0
chr2	70204435	70205956	prostate_carcinoma.88873	0	-	70204435	70205956	0	2	626,275	0,1246
chr2	70204575	70205050	liver_polyA+.117988	0	.	70204575	70205050	0	1	475	0
chr2	70204608	70205316	MIP101.61858	0	.	70204608	70205316	0	1	708	0
chr2	70204645	70205089	MB435_Burge.39464	0	.	70204645	70205089	0	1	444	0
chr2	70204646	70205075	H9_polyA+.41089	0	.	70204646	70205075	0	1	429	0
chr2	70204657	70205952	HIT000088663	0	-	70204657	70205952	0	2	404,271	0,1024
chr2	70204670	70223340	Rinn_00004302	0	-	70204670	70223340	0	2	391,37	0,18633
chr2	70204671	70205952	NR_024444	0	-	70204671	70205952	0	2	390,271	0,1010
chr2	70204671	70205952	Rinn_00002667	0	-	70204671	70205952	0	2	390,272	0,1009
chr2	70204671	70205953	ENST00000414141	0	-	70204671	70205953	0	2	390,272	0,1010
chr2	70204688	70205166	A549_Myers.78386	0	.	70204688	70205166	0	1	478	0
chr2	70204698	70205123	BT474_Burge_Thompson.31795	0	.	70204698	70205123	0	1	425	0
chr2	70204699	70205933	prostate_normal.53493	0	-	70204699	70205933	0	2	362,252	0,982
chr2	70204708	70205057	adipose_Burge.35420	0	.	70204708	70205057	0	1	349	0
chr2	70204712	70206127	MeI_Garraway.15966	0	-	70204712	70206127	0	2	349,446	0,969
chr2	70204714	70205087	breast_Burge.37238	0	.	70204714	70205087	0	1	373	0
chr2	70204716	70205026	testes_Burge.48449	0	.	70204716	70205026	0	1	310	0
chr2	70204734	70205396	REMC_BreastStem.44862	0	.	70204734	70205396	0	1	662	0
chr2	70205606	70207474	B_cells_Cheung.173616	0	.	70205606	70207474	0	1	1868	0
chr2	70205735	70206083	A549_Myers.78388	0	.	70205735	70206083	0	1	348	0
chr2	70210192	70210869	B_cells_Cheung.173622	0	.	70210192	70210869	0	1	677	0
chr2	70213892	70215812	REMC_MyoepithelialBreast.81910	0	.	70213892	70215812	0	1	1920	0
chr2	70215589	70216104	B_cells_Cheung.173627	0	.	70215589	70216104	0	1	515	0
chr2	70220583	70222928	REMC_MyoepithelialBreast.81912	0	.	70220583	70222928	0	1	2345	0
chr2	70221502	70222999	REMC_BreastStem.44865	0	.	70221502	70222999	0	1	1497	0
chr2	70221658	70222932	MIP101.61863	0	.	70221658	70222932	0	1	1274	0
chr2	70222044	70222938	H9_polyA-_Chen.13083	0	.	70222044	70222938	0	1	894	0
chr2	70223509	70226166	REMC_MyoepithelialBreast.81913	0	.	70223509	70226166	0	1	2657	0
chr2	70225502	70226168	B_cells_Cheung.173635	0	.	70225502	70226168	0	1	666	0
chr2	70482630	70484434	HIT000043963	0	-	70482630	70484434	0	1	1804	0
chr2	70512078	70514944	REMC_LuminalBreast.88333	0	.	70512078	70514944	0	1	2866	0
chr2	70522604	70524931	REMC_MyoepithelialBreast.81968	0	.	70522604	70524931	0	1	2327	0
chr2	70523363	70524451	melanoma_Garraway_short_term_cultures.62053	0	.	70523363	70524451	0	1	1088	0
chr2	70525867	70526796	REMC_MyoepithelialBreast.81969	0	.	70525867	70526796	0	1	929	0
chr2	70650101	70651205	MCF10A_Thompson.19501	0	.	70650101	70651205	0	1	1104	0
chr2	70650120	70651117	MIP101.61937	0	.	70650120	70651117	0	1	997	0
chr2	70650489	70651488	REMC_LuminalBreast.88304	0	.	70650489	70651488	0	1	999	0
chr2	70884132	70884459	MIP101.61939	0	.	70884132	70884459	0	1	327	0
chr2	70902705	70904232	prostate_carcinoma.88966	0	.	70902705	70904232	0	1	1527	0
chr2	70908402	70909302	prostate_carcinoma.88968	0	.	70908402	70909302	0	1	900	0
chr2	70968103	70968518	A549_Myers.78463	0	.	70968103	70968518	0	1	415	0
chr2	70968490	70968959	melanoma_Garraway_short_term_cultures.62086	0	.	70968490	70968959	0	1	469	0
chr2	70968619	70969012	A549_Myers.78464	0	.	70968619	70969012	0	1	393	0
chr2	70969573	70969929	A549_Myers.78465	0	.	70969573	70969929	0	1	356	0
chr2	70973697	70975229	melanoma_Garraway_short_term_cultures.62087	0	.	70973697	70975229	0	1	1532	0
chr2	70975065	70975999	HepG2_Caltech_ENCODE.33954	0	.	70975065	70975999	0	1	934	0
chr2	70976155	70977104	HepG2_Caltech_ENCODE.33955	0	.	70976155	70977104	0	1	949	0
chr2	71077750	71078875	REMC_MyoepithelialBreast.82019	0	.	71077750	71078875	0	1	1125	0
chr2	71081203	71082112	B_cells_Cheung.173767	0	.	71081203	71082112	0	1	909	0
chr2	71081657	71082191	A549_Myers.78510	0	.	71081657	71082191	0	1	534	0
chr2	71082174	71082699	B_cells_Cheung.173768	0	.	71082174	71082699	0	1	525	0
chr2	71088944	71089313	A549_Myers.78512	0	.	71088944	71089313	0	1	369	0
chr2	71138411	71139547	B_cells_Cheung.173774	0	.	71138411	71139547	0	1	1136	0
chr2	71140786	71141091	B_cells_Cheung.173775	0	.	71140786	71141091	0	1	305	0
chr2	71160922	71163946	REMC_LuminalBreast.88319	0	.	71160922	71163946	0	1	3024	0
chr2	71161871	71163843	REMC_MyoepithelialBreast.82003	0	.	71161871	71163843	0	1	1972	0
chr2	71162570	71163838	REMC_BreastStem.44899	0	.	71162570	71163838	0	1	1268	0
chr2	71162621	71163814	H1_polyA+.103598	0	.	71162621	71163814	0	1	1193	0
chr2	71162787	71163470	CD4_Plagnol_activated.59271	0	.	71162787	71163470	0	1	683	0
chr2	71162910	71163790	CD4_Plagnol_resting.57708	0	.	71162910	71163790	0	1	880	0
chr2	71162928	71163836	B_cells_Cheung.173785	0	.	71162928	71163836	0	1	908	0
chr2	71162946	71163486	melanoma_Garraway_short_term_cultures.62107	0	.	71162946	71163486	0	1	540	0
chr2	71170000	71170409	H1_polyA+.103600	0	.	71170000	71170409	0	1	409	0
chr2	71234301	71234981	A549_Myers.78523	0	.	71234301	71234981	0	1	680	0
chr2	71247696	71248298	prostate_carcinoma.89016	0	.	71247696	71248298	0	1	602	0
chr2	71349446	71350564	MIP101.61970	0	.	71349446	71350564	0	1	1118	0
chr2	71518554	71519101	H1_polyA+.103636	0	.	71518554	71519101	0	1	547	0
chr2	71521537	71526198	REMC_LuminalBreast.88350	0	.	71521537	71526198	0	1	4661	0
chr2	71521825	71526125	REMC_MyoepithelialBreast.82022	0	.	71521825	71526125	0	1	4300	0
chr2	71522904	71525099	MIP101.62001	0	.	71522904	71525099	0	1	2195	0
chr2	71523080	71526120	H1_polyA+.103638	0	.	71523080	71526120	0	1	3040	0
chr2	71523129	71525112	CD4_Plagnol_activated.59293	0	.	71523129	71525112	0	1	1983	0
chr2	71523354	71525126	B_cells_Cheung.173832	0	.	71523354	71525126	0	1	1772	0
chr2	71524022	71525114	CD4_Plagnol_resting.57739	0	.	71524022	71525114	0	1	1092	0
chr2	71524050	71525112	melanoma_Garraway_short_term_cultures.62160	0	.	71524050	71525112	0	1	1062	0
chr2	71524068	71525116	brain_AmbionMAQC.40747	0	.	71524068	71525116	0	1	1048	0
chr2	71524596	71525099	prostate_normal.53616	0	.	71524596	71525099	0	1	503	0
chr2	71524657	71525127	K562.40919	0	.	71524657	71525127	0	1	470	0
chr2	71770253	71772077	H1_polyA+.103643	0	.	71770253	71772077	0	1	1824	0
chr2	71771459	71771769	A549_Myers.78598	0	.	71771459	71771769	0	1	310	0
chr2	71776800	71777149	A549_Myers.78600	0	.	71776800	71777149	0	1	349	0
chr2	71823740	71824404	brain_AmbionMAQC.40752	0	.	71823740	71824404	0	1	664	0
chr2	71867496	71867801	A549_Myers.78606	0	.	71867496	71867801	0	1	305	0
chr2	71932485	71933039	A549_Myers.78613	0	.	71932485	71933039	0	1	554	0
chr2	71959237	71959753	A549_Myers.78615	0	.	71959237	71959753	0	1	516	0
chr2	71963131	71963459	A549_Myers.78616	0	.	71963131	71963459	0	1	328	0
chr2	71963602	71964171	A549_Myers.78617	0	.	71963602	71964171	0	1	569	0
chr2	72006153	72013287	khalil_1071	0	.	72006153	72013287	0	6	211,205,645,507,153,191	0,692,2470,3290,5362,6943
chr2	72013262	72014047	A549_Myers.78623	0	.	72013262	72014047	0	1	785	0
chr2	72083900	72084288	A549_Myers.78627	0	.	72083900	72084288	0	1	388	0
chr2	72113319	72113754	A549_Myers.78630	0	.	72113319	72113754	0	1	435	0
chr2	72114274	72114612	A549_Myers.78631	0	.	72114274	72114612	0	1	338	0
chr2	72121971	72122343	K562.40939	0	.	72121971	72122343	0	1	372	0
chr2	72164367	72164678	A549_Myers.78636	0	.	72164367	72164678	0	1	311	0
chr2	72171220	72171811	A549_Myers.78637	0	.	72171220	72171811	0	1	591	0
chr2	72185480	72186083	BT474_Burge_Thompson.31855	0	.	72185480	72186083	0	1	603	0
chr2	72193697	72195272	pHIT000004342	0	+	72193697	72195272	0	2	58,245	0,1330
chr2	72195212	72195769	A549_Myers.78643	0	.	72195212	72195769	0	1	557	0
chr2	72196294	72197279	A549_Myers.78644	0	.	72196294	72197279	0	1	985	0
chr2	72208104	72208412	A549_Myers.78645	0	.	72208104	72208412	0	1	308	0
chr2	72252932	72254414	HepG2_Caltech_ENCODE.33994	0	.	72252932	72254414	0	1	1482	0
chr2	72253149	72255124	REMC_BreastStem.44930	0	.	72253149	72255124	0	1	1975	0
chr2	72253761	72254515	brain_AmbionMAQC.40757	0	.	72253761	72254515	0	1	754	0
chr2	72254300	72255142	prostate_normal.53634	0	.	72254300	72255142	0	1	842	0
chr2	72254390	72255125	H9_polyA+.41161	0	.	72254390	72255125	0	1	735	0
chr2	72254410	72254744	H1_rRNA-depleted_UCSD_REMC.78007	0	.	72254410	72254744	0	1	334	0
chr2	72254585	72255834	HepG2_Caltech_ENCODE.33995	0	.	72254585	72255834	0	1	1249	0
chr2	72942967	72944056	A549_Myers.78688	0	.	72942967	72944056	0	1	1089	0
chr2	72974579	72974956	A549_Myers.78694	0	.	72974579	72974956	0	1	377	0
chr2	72994142	72995262	brain_AmbionMAQC.40762	0	.	72994142	72995262	0	1	1120	0
chr2	72995825	72996333	H9_polyA+.41163	0	.	72995825	72996333	0	1	508	0
chr2	73018048	73018812	HepG2_Caltech_ENCODE.34005	0	.	73018048	73018812	0	1	764	0
chr2	73018209	73018526	A549_Myers.78706	0	.	73018209	73018526	0	1	317	0
chr2	73256293	73256888	B_Cells_Pritchard.2798593	0	.	73256293	73256888	0	1	595	0
chr2	73258023	73258735	A549_Myers.78776	0	.	73258023	73258735	0	1	712	0
chr2	73691798	73692334	prostate_carcinoma.89152	0	.	73691798	73692334	0	1	536	0
chr2	73706009	73706841	prostate_carcinoma.89154	0	.	73706009	73706841	0	1	832	0
chr2	73714452	73716056	REMC_LuminalBreast.88393	0	.	73714452	73716056	0	1	1604	0
chr2	73785237	73786142	prostate_carcinoma.89165	0	.	73785237	73786142	0	1	905	0
chr2	73788770	73790237	prostate_carcinoma.89168	0	.	73788770	73790237	0	1	1467	0
chr2	73789366	73789673	brain_AmbionMAQC.40834	0	.	73789366	73789673	0	1	307	0
chr2	73791495	73792769	prostate_carcinoma.89170	0	.	73791495	73792769	0	1	1274	0
chr2	73791581	73792398	REMC_LuminalBreast.88442	0	.	73791581	73792398	0	1	817	0
chr2	73799052	73801173	REMC_BreastStem.44995	0	.	73799052	73801173	0	1	2121	0
chr2	73799056	73800150	B_Cells_Pritchard.2800161	0	.	73799056	73800150	0	1	1094	0
chr2	73799562	73801277	REMC_MyoepithelialBreast.82245	0	.	73799562	73801277	0	1	1715	0
chr2	73799851	73800383	brain_AmbionMAQC.40835	0	.	73799851	73800383	0	1	532	0
chr2	73819585	73821703	prostate_carcinoma.89177	0	.	73819585	73821703	0	1	2118	0
chr2	73819996	73821785	melanoma_Garraway_short_term_cultures.62237	0	.	73819996	73821785	0	1	1789	0
chr2	73820197	73821386	MIP101.62183	0	.	73820197	73821386	0	1	1189	0
chr2	73820529	73821528	brain_AmbionMAQC.40842	0	.	73820529	73821528	0	1	999	0
chr2	73821744	73823318	prostate_normal.53708	0	+	73821744	73823318	0	2	39,559	0,1015
chr2	73830571	73832294	HepG2_Caltech_ENCODE.34055	0	.	73830571	73832294	0	1	1723	0
chr2	73830686	73832249	HeLa_polyA+_Chen.32654	0	.	73830686	73832249	0	1	1563	0
chr2	73831428	73832233	H9_polyA+.41216	0	.	73831428	73832233	0	1	805	0
chr2	73831433	73832249	brain_AmbionMAQC.40847	0	.	73831433	73832249	0	1	816	0
chr2	73831857	73832258	CD4_Snyder.65531	0	.	73831857	73832258	0	1	401	0
chr2	74049547	74052000	REMC_LuminalBreast.88464	0	.	74049547	74052000	0	1	2453	0
chr2	74050453	74051848	MIP101.62223	0	.	74050453	74051848	0	1	1395	0
chr2	74054898	74055280	B_cells_Cheung.175082	0	.	74054898	74055280	0	1	382	0
chr2	74055616	74058347	REMC_LuminalBreast.88467	0	.	74055616	74058347	0	1	2731	0
chr2	74055788	74056732	B_cells_Cheung.175084	0	.	74055788	74056732	0	1	944	0
chr2	74055856	74056717	CD4_Plagnol_resting.57898	0	.	74055856	74056717	0	1	861	0
chr2	74056948	74058103	H1_polyA+.103935	0	.	74056948	74058103	0	1	1155	0
chr2	74057752	74058102	B_cells_Cheung.175087	0	.	74057752	74058102	0	1	350	0
chr2	74061734	74062184	prostate_normal.55383	0	.	74061734	74062184	0	1	450	0
chr2	74061742	74062209	prostate_carcinoma.96306	0	.	74061742	74062209	0	1	467	0
chr2	74063940	74065847	CD4_Plagnol_activated.59696	0	.	74063940	74065847	0	1	1907	0
chr2	74064009	74066296	A549_Myers.78839	0	.	74064009	74066296	0	1	2287	0
chr2	74064124	74064670	K562.41009	0	.	74064124	74064670	0	1	546	0
chr2	74064173	74065297	HeLa_polyA+_Chen.32665	0	.	74064173	74065297	0	1	1124	0
chr2	74064612	74064997	BT474_Burge_Thompson.31941	0	.	74064612	74064997	0	1	385	0
chr2	74064620	74065007	T47D_Burge_Thompson.26901	0	.	74064620	74065007	0	1	387	0
chr2	74064724	74065104	prostate_normal.53755	0	.	74064724	74065104	0	1	380	0
chr2	74065164	74065797	CD4_Plagnol_resting.57902	0	.	74065164	74065797	0	1	633	0
chr2	74190282	74193107	B_Cells_Pritchard.2800801	0	.	74190282	74193107	0	1	2825	0
chr2	74197378	74197771	B_cells_Cheung.174269	0	.	74197378	74197771	0	1	393	0
chr2	74199986	74203106	B_cells_Cheung.174272	0	.	74199986	74203106	0	1	3120	0
chr2	74199991	74202384	melanoma_Garraway_short_term_cultures.62281	0	.	74199991	74202384	0	1	2393	0
chr2	74200010	74202460	BT20_Thompson.20117	0	.	74200010	74202460	0	1	2450	0
chr2	74200017	74202405	MCF7_Burge_Thompson.29179	0	.	74200017	74202405	0	1	2388	0
chr2	74200027	74202419	K562.41013	0	.	74200027	74202419	0	1	2392	0
chr2	74200392	74202397	A549_Myers.78877	0	.	74200392	74202397	0	1	2005	0
chr2	74200772	74202431	MCF10A_Thompson.19545	0	.	74200772	74202431	0	1	1659	0
chr2	74200906	74202492	brain_AmbionMAQC.40866	0	.	74200906	74202492	0	1	1586	0
chr2	74200908	74203110	BT474_Burge_Thompson.31897	0	.	74200908	74203110	0	1	2202	0
chr2	74200965	74201911	HeLa_polyA+_Chen.32666	0	.	74200965	74201911	0	1	946	0
chr2	74200978	74202462	MDAMB231_Thompson.20124	0	.	74200978	74202462	0	1	1484	0
chr2	74200992	74202442	MDAMB468_Thompson.22436	0	.	74200992	74202442	0	1	1450	0
chr2	74200999	74201353	pHIT000004392	0	+	74200999	74201353	0	1	354	0
chr2	74201002	74201418	CD4_Snyder.65569	0	.	74201002	74201418	0	1	416	0
chr2	74201004	74202451	T47D_Burge_Thompson.26907	0	.	74201004	74202451	0	1	1447	0
chr2	74201026	74201711	CD4_Plagnol_activated.59492	0	.	74201026	74201711	0	1	685	0
chr2	74201795	74202296	NEC_from_H9.68257	0	.	74201795	74202296	0	1	501	0
chr2	74203177	74204423	B_cells_Cheung.174273	0	.	74203177	74204423	0	1	1246	0
chr2	74203405	74204580	REMC_MyoepithelialBreast.82412	0	.	74203405	74204580	0	1	1175	0
chr2	74204062	74204383	BT20_Thompson.20120	0	.	74204062	74204383	0	1	321	0
chr2	74204063	74204399	BT474_Burge_Thompson.31899	0	.	74204063	74204399	0	1	336	0
chr2	74204672	74205216	B_cells_Cheung.174274	0	.	74204672	74205216	0	1	544	0
chr2	74204891	74205241	REMC_LuminalBreast.88549	0	.	74204891	74205241	0	1	350	0
chr2	74211018	74212500	B_cells_Cheung.174278	0	.	74211018	74212500	0	1	1482	0
chr2	74211084	74212370	H1_polyA+.103939	0	.	74211084	74212370	0	1	1286	0
chr2	74211258	74212900	BT474_Burge_Thompson.31902	0	.	74211258	74212900	0	1	1642	0
chr2	74211489	74212697	REMC_LuminalBreast.88553	0	.	74211489	74212697	0	1	1208	0
chr2	74211540	74212834	prostate_carcinoma.96352	0	.	74211540	74212834	0	1	1294	0
chr2	74228643	74229689	ENST00000529783	0	+	74228643	74229689	0	2	470,161	0,885
chr2	74228664	74230876	melanoma_Garraway_short_term_cultures.62293	0	+	74228664	74230876	0	2	449,1544	0,668
chr2	74228674	74230928	H9_polyA+.41238	0	+	74228674	74230928	0	2	439,1596	0,658
chr2	74228678	74230854	MeWo_Garraway.33442	0	+	74228678	74230854	0	2	435,1522	0,654
chr2	74228697	74230872	MeI_Garraway.16044	0	+	74228697	74230872	0	2	416,1540	0,635
chr2	74228719	74231519	Rinn_00003733	0	+	74228719	74231519	0	2	394,2179	0,621
chr2	74229900	74230916	HeLa_polyA+_Chen.32681	0	.	74229900	74230916	0	1	1016	0
chr2	74230301	74230876	MCF7_Burge_Thompson.29188	0	.	74230301	74230876	0	1	575	0
chr2	74268766	74269638	B_cells_Cheung.174305	0	.	74268766	74269638	0	1	872	0
chr2	74427126	74429019	B_cells_Cheung.174364	0	.	74427126	74429019	0	1	1893	0
chr2	74427225	74428943	REMC_MyoepithelialBreast.82452	0	.	74427225	74428943	0	1	1718	0
chr2	74437398	74440310	HIT000046117	0	+	74437398	74440310	0	1	2912	0
chr2	74437637	74439869	H9_polyA+.41257	0	.	74437637	74439869	0	1	2232	0
chr2	74437670	74438699	NEC_from_H9.68290	0	.	74437670	74438699	0	1	1029	0
chr2	74437674	74439173	melanoma_Garraway_short_term_cultures.62336	0	.	74437674	74439173	0	1	1499	0
chr2	74437760	74439067	HeLa_polyA+_Chen.32706	0	.	74437760	74439067	0	1	1307	0
chr2	74437872	74438482	CD4_Plagnol_activated.59569	0	.	74437872	74438482	0	1	610	0
chr2	74437965	74438351	testes_Burge.48675	0	.	74437965	74438351	0	1	386	0
chr2	74437981	74438603	CD4_Plagnol_resting.57959	0	.	74437981	74438603	0	1	622	0
chr2	74438137	74438634	BT474_Burge_Thompson.31921	0	.	74438137	74438634	0	1	497	0
chr2	74438189	74439428	MCF7_Burge_Thompson.29203	0	.	74438189	74439428	0	1	1239	0
chr2	74438223	74439685	K562.41036	0	.	74438223	74439685	0	1	1462	0
chr2	74439467	74440416	MDAMB468_Thompson.22453	0	.	74439467	74440416	0	1	949	0
chr2	74478853	74479554	REMC_LuminalBreast.88520	0	.	74478853	74479554	0	1	701	0
chr2	74479043	74479927	REMC_MyoepithelialBreast.82139	0	.	74479043	74479927	0	1	884	0
chr2	74480056	74481403	brain_AmbionMAQC.41657	0	.	74480056	74481403	0	1	1347	0
chr2	74480094	74481467	REMC_MyoepithelialBreast.82140	0	.	74480094	74481467	0	1	1373	0
chr2	74989253	74990256	B_cells_Cheung.174583	0	.	74989253	74990256	0	1	1003	0
chr2	74989470	75000339	B_Cells_Pritchard.2802181	0	-	74989470	75000339	0	2	939,71	0,10798
chr2	74989594	74990332	MCF7_Burge_Thompson.29524	0	.	74989594	74990332	0	1	738	0
chr2	74989605	75000323	prostate_normal.53833	0	-	74989605	75000323	0	2	804,55	0,10663
chr2	74989607	74990324	prostate_carcinoma.89406	0	.	74989607	74990324	0	1	717	0
chr2	74990951	74991465	melanoma_Garraway_short_term_cultures.62401	0	.	74990951	74991465	0	1	514	0
chr2	74990966	74991472	MCF7_Burge_Thompson.29526	0	.	74990966	74991472	0	1	506	0
chr2	74991126	74991452	prostate_carcinoma.89407	0	.	74991126	74991452	0	1	326	0
chr2	74993219	74993761	MCF7_Burge_Thompson.29528	0	.	74993219	74993761	0	1	542	0
chr2	74996090	74996392	A549_Myers.78954	0	.	74996090	74996392	0	1	302	0
chr2	74996157	74996863	B_cells_Cheung.174588	0	.	74996157	74996863	0	1	706	0
chr2	75000490	75000806	MCF7_Burge_Thompson.29536	0	.	75000490	75000806	0	1	316	0
chr2	75001279	75002522	B_Cells_Pritchard.2802189	0	.	75001279	75002522	0	1	1243	0
chr2	75001325	75002599	prostate_carcinoma.89410	0	.	75001325	75002599	0	1	1274	0
chr2	75001366	75004332	B_cells_Cheung.174593	0	.	75001366	75004332	0	1	2966	0
chr2	75001645	75002204	prostate_normal.53834	0	.	75001645	75002204	0	1	559	0
chr2	75003258	75004004	CD4_Plagnol_resting.57986	0	.	75003258	75004004	0	1	746	0
chr2	75004851	75005559	MCF7_Burge_Thompson.29542	0	.	75004851	75005559	0	1	708	0
chr2	75008523	75010303	CD4_Plagnol_activated.59619	0	.	75008523	75010303	0	1	1780	0
chr2	75008588	75009041	MCF7_Burge_Thompson.29545	0	.	75008588	75009041	0	1	453	0
chr2	75011888	75014313	B_Cells_Pritchard.2802197	0	-	75011888	75014313	0	1	2425	0
chr2	75018931	75019860	MeWo_Garraway.33526	0	.	75018931	75019860	0	1	929	0
chr2	75024235	75029964	B_cells_Cheung.174600	0	.	75024235	75029964	0	1	5729	0
chr2	75032258	75035717	B_cells_Cheung.174602	0	.	75032258	75035717	0	1	3459	0
chr2	75033185	75033992	melanoma_Garraway_short_term_cultures.62417	0	.	75033185	75033992	0	1	807	0
chr2	75033376	75034124	prostate_carcinoma.89419	0	.	75033376	75034124	0	1	748	0
chr2	75033604	75034201	K562.41079	0	.	75033604	75034201	0	1	597	0
chr2	75035818	75038089	B_cells_Cheung.174603	0	.	75035818	75038089	0	1	2271	0
chr2	75060150	75062345	H1_polyA+.104126	0	.	75060150	75062345	0	1	2195	0
chr2	75060354	75062235	REMC_LuminalBreast.88618	0	.	75060354	75062235	0	1	1881	0
chr2	75066627	75067033	B_Cells_Pritchard.2802365	0	-	75066627	75067033	0	1	406	0
chr2	75069437	75070042	REMC_MyoepithelialBreast.82206	0	.	75069437	75070042	0	1	605	0
chr2	75074011	75075985	REMC_MyoepithelialBreast.82208	0	.	75074011	75075985	0	1	1974	0
chr2	75075396	75077791	B_cells_Cheung.174619	0	.	75075396	75077791	0	1	2395	0
chr2	75076615	75077907	H1_polyA+.104133	0	.	75076615	75077907	0	1	1292	0
chr2	75078808	75080525	MIP101.62315	0	.	75078808	75080525	0	1	1717	0
chr2	75078832	75081240	H1_polyA+.104134	0	.	75078832	75081240	0	1	2408	0
chr2	75078905	75079553	B_cells_Cheung.174621	0	.	75078905	75079553	0	1	648	0
chr2	75078920	75080472	HepG2_Caltech_ENCODE.34133	0	.	75078920	75080472	0	1	1552	0
chr2	75078959	75079651	REMC_MyoepithelialBreast.82210	0	.	75078959	75079651	0	1	692	0
chr2	75281186	75281654	A549_Myers.78974	0	.	75281186	75281654	0	1	468	0
chr2	75289393	75290251	B_Cells_Pritchard.2803243	0	.	75289393	75290251	0	1	858	0
chr2	75290872	75291424	B_Cells_Pritchard.2803247	0	.	75290872	75291424	0	1	552	0
chr2	75303183	75303812	B_Cells_Pritchard.2803273	0	.	75303183	75303812	0	1	629	0
chr2	75311732	75317452	B_cells_Cheung.174695	0	.	75311732	75317452	0	1	5720	0
chr2	75311802	75318761	B_Cells_Pritchard.2803279	0	+	75311802	75318761	0	2	5645,1063	0,5896
chr2	75317837	75318178	A549_Myers.78976	0	.	75317837	75318178	0	1	341	0
chr2	75320549	75322967	B_cells_Cheung.174699	0	.	75320549	75322967	0	1	2418	0
chr2	75321181	75322835	B_Cells_Pritchard.2803289	0	.	75321181	75322835	0	1	1654	0
chr2	75321530	75322052	A549_Myers.78980	0	.	75321530	75322052	0	1	522	0
chr2	75329354	75362254	B_cells_Cheung.174697	0	+	75329354	75362254	0	2	27879,3540	0,29360
chr2	75342633	75360602	B_Cells_Pritchard.2803327	0	-	75342633	75360602	0	2	7236,10187	0,7782
chr2	75342633	75360602	B_Cells_Pritchard.2803325	0	+	75342633	75360602	0	5	2634,955,1083,3717,7469	0,3722,4755,5838,10500
chr2	75356324	75357227	prostate_carcinoma.89435	0	.	75356324	75357227	0	1	903	0
chr2	75358730	75360256	melanoma_Garraway_short_term_cultures.62420	0	.	75358730	75360256	0	1	1526	0
chr2	75383030	75383617	B_Cells_Pritchard.2803373	0	.	75383030	75383617	0	1	587	0
chr2	75385248	75387081	B_Cells_Pritchard.2803381	0	.	75385248	75387081	0	1	1833	0
chr2	75392310	75393222	B_Cells_Pritchard.2803407	0	.	75392310	75393222	0	1	912	0
chr2	75393374	75394853	B_Cells_Pritchard.2803409	0	.	75393374	75394853	0	1	1479	0
chr2	75395010	75400265	B_cells_Cheung.174718	0	.	75395010	75400265	0	1	5255	0
chr2	75413384	75418142	B_cells_Cheung.174724	0	.	75413384	75418142	0	1	4758	0
chr2	75425592	75426805	B_Cells_Pritchard.2803501	0	.	75425592	75426805	0	1	1213	0
chr2	75462555	75472454	B_cells_Cheung.174746	0	.	75462555	75472454	0	1	9899	0
chr2	75463597	75470332	B_Cells_Pritchard.2803581	0	+	75463597	75470332	0	6	1421,547,165,46,32,2161	0,1778,3400,4104,4316,4574
chr2	75487431	75490923	B_cells_Cheung.174756	0	.	75487431	75490923	0	1	3492	0
chr2	75487489	75490756	B_Cells_Pritchard.2803625	0	.	75487489	75490756	0	1	3267	0
chr2	75519268	75520120	B_Cells_Pritchard.2803705	0	.	75519268	75520120	0	1	852	0
chr2	75725517	75726268	H1_polyA+.104170	0	.	75725517	75726268	0	1	751	0
chr2	75901285	75901623	B_cells_Cheung.174806	0	.	75901285	75901623	0	1	338	0
chr2	75902782	75903735	B_cells_Cheung.174808	0	.	75902782	75903735	0	1	953	0
chr2	75904333	75905797	B_cells_Cheung.174809	0	.	75904333	75905797	0	1	1464	0
chr2	75975164	75975873	K562.41120	0	.	75975164	75975873	0	1	709	0
chr2	75995867	75999537	K562.41129	0	.	75995867	75999537	0	1	3670	0
chr2	76010254	76010670	B_cells_Cheung.174835	0	.	76010254	76010670	0	1	416	0
chr2	76021749	76022658	B_cells_Cheung.174838	0	.	76021749	76022658	0	1	909	0
chr2	76021882	76022256	K562.41132	0	.	76021882	76022256	0	1	374	0
chr2	76029679	76030677	K562.41134	0	.	76029679	76030677	0	1	998	0
chr2	76049439	76055786	B_cells_Cheung.174841	0	.	76049439	76055786	0	1	6347	0
chr2	76052396	76053061	melanoma_Garraway_short_term_cultures.62451	0	.	76052396	76053061	0	1	665	0
chr2	76053169	76054088	melanoma_Garraway_short_term_cultures.62452	0	.	76053169	76054088	0	1	919	0
chr2	76053402	76054546	K562.41141	0	.	76053402	76054546	0	1	1144	0
chr2	76121746	76122163	B_cells_Cheung.174845	0	.	76121746	76122163	0	1	417	0
chr2	76147960	76149311	B_cells_Cheung.174853	0	.	76147960	76149311	0	1	1351	0
chr2	76148303	76149114	K562.41149	0	.	76148303	76149114	0	1	811	0
chr2	76327664	76328127	A549_Myers.79023	0	.	76327664	76328127	0	1	463	0
chr2	77860087	77861203	HepG2_Caltech_ENCODE.34193	0	.	77860087	77861203	0	1	1116	0
chr2	77899819	77900512	HepG2_Caltech_ENCODE.34201	0	.	77899819	77900512	0	1	693	0
chr2	77904904	77905707	HepG2_Caltech_ENCODE.34202	0	.	77904904	77905707	0	1	803	0
chr2	78031775	78032150	K562.41175	0	.	78031775	78032150	0	1	375	0
chr2	78136900	78137919	HepG2_Caltech_ENCODE.34222	0	.	78136900	78137919	0	1	1019	0
chr2	78178017	78181189	HepG2_Caltech_ENCODE.34226	0	.	78178017	78181189	0	1	3172	0
chr2	78190814	78191804	HepG2_Caltech_ENCODE.34230	0	.	78190814	78191804	0	1	990	0
chr2	78207824	78208828	HepG2_Caltech_ENCODE.34241	0	.	78207824	78208828	0	1	1004	0
chr2	78758486	78758787	B_Cells_Pritchard.2809607	0	.	78758486	78758787	0	1	301	0
chr2	78857701	78858843	MeI_Garraway.16090	0	.	78857701	78858843	0	1	1142	0
chr2	80780022	80950826	Rinn_00003327	0	-	80780022	80950826	0	5	239,64,95,229,147	0,4244,77082,81387,170657
chr2	81562222	81562729	B_Cells_Pritchard.2814573	0	.	81562222	81562729	0	1	507	0
chr2	81662346	81665192	K562.41246	0	.	81662346	81665192	0	1	2846	0
chr2	81662868	81665029	BT20_Thompson.20202	0	.	81662868	81665029	0	1	2161	0
chr2	81663082	81664079	T47D_Burge_Thompson.26956	0	.	81663082	81664079	0	1	997	0
chr2	81663333	81665231	HIT000082477	0	+	81663333	81665231	0	1	1898	0
chr2	81663412	81664615	B_cells_Cheung.174963	0	.	81663412	81664615	0	1	1203	0
chr2	81663499	81664354	HIT000390985	0	+	81663499	81664354	0	1	855	0
chr2	81955791	81956554	prostate_carcinoma.89468	0	.	81955791	81956554	0	1	763	0
chr2	84395583	84395922	A549_Myers.79067	0	.	84395583	84395922	0	1	339	0
chr2	84988432	84990498	REMC_LuminalBreast.88678	0	.	84988432	84990498	0	1	2066	0
chr2	84988569	84989356	HeLa_polyA-_Chen.17328	0	.	84988569	84989356	0	1	787	0
chr2	84988873	84990230	CD4_Plagnol_activated.59655	0	.	84988873	84990230	0	1	1357	0
chr2	84988889	84990405	H1_polyA+.104477	0	.	84988889	84990405	0	1	1516	0
chr2	84989529	84990410	B_cells_Cheung.175708	0	.	84989529	84990410	0	1	881	0
chr2	84989590	84990883	HeLa_polyA+_Chen.32794	0	.	84989590	84990883	0	1	1293	0
chr2	84989706	84990395	HeLa_polyA-_Chen.17329	0	.	84989706	84990395	0	1	689	0
chr2	84989868	84990659	melanoma_Garraway_short_term_cultures.62602	0	.	84989868	84990659	0	1	791	0
chr2	84994338	84995871	REMC_MyoepithelialBreast.82286	0	.	84994338	84995871	0	1	1533	0
chr2	84994374	84996409	REMC_LuminalBreast.88681	0	.	84994374	84996409	0	1	2035	0
chr2	85003011	85004355	REMC_LuminalBreast.88686	0	.	85003011	85004355	0	1	1344	0
chr2	85003646	85004351	REMC_MyoepithelialBreast.82295	0	.	85003646	85004351	0	1	705	0
chr2	85004536	85005134	B_cells_Cheung.175718	0	.	85004536	85005134	0	1	598	0
chr2	85005439	85006853	REMC_LuminalBreast.88687	0	.	85005439	85006853	0	1	1414	0
chr2	85009033	85014063	REMC_MyoepithelialBreast.82297	0	.	85009033	85014063	0	1	5030	0
chr2	85010128	85015696	REMC_LuminalBreast.88690	0	.	85010128	85015696	0	1	5568	0
chr2	85011991	85014114	B_cells_Cheung.175722	0	.	85011991	85014114	0	1	2123	0
chr2	85011997	85014068	B_Cells_Pritchard.2822009	0	-	85011997	85014068	0	1	2071	0
chr2	85012877	85013651	HeLa_polyA+_Chen.32808	0	.	85012877	85013651	0	1	774	0
chr2	85014170	85018657	REMC_MyoepithelialBreast.82298	0	.	85014170	85018657	0	1	4487	0
chr2	85015797	85026290	REMC_LuminalBreast.88691	0	.	85015797	85026290	0	1	10493	0
chr2	85019827	85029169	REMC_MyoepithelialBreast.82300	0	.	85019827	85029169	0	1	9342	0
chr2	85021320	85026104	B_Cells_Pritchard.2822035	0	-	85021320	85026104	0	1	4784	0
chr2	85022346	85024698	H1_polyA+.104571	0	.	85022346	85024698	0	1	2352	0
chr2	85022773	85023762	melanoma_Garraway_short_term_cultures.62605	0	.	85022773	85023762	0	1	989	0
chr2	85022883	85023902	HeLa_polyA+_Chen.32810	0	.	85022883	85023902	0	1	1019	0
chr2	85026208	85035370	B_Cells_Pritchard.2822039	0	-	85026208	85035370	0	2	2408,3502	0,5660
chr2	85026208	85033874	B_Cells_Pritchard.2822037	0	+	85026208	85033874	0	4	2415,2463,687,693	0,2742,5473,6973
chr2	85031047	85031416	B_cells_Cheung.175735	0	.	85031047	85031416	0	1	369	0
chr2	85031655	85038174	REMC_MyoepithelialBreast.82303	0	.	85031655	85038174	0	1	6519	0
chr2	85031699	85035415	REMC_LuminalBreast.88694	0	.	85031699	85035415	0	1	3716	0
chr2	85034191	85035438	HeLa_polyA+_Chen.32797	0	.	85034191	85035438	0	1	1247	0
chr2	85035546	85038215	REMC_LuminalBreast.88695	0	.	85035546	85038215	0	1	2669	0
chr2	85036774	85045037	B_Cells_Pritchard.2822047	0	-	85036774	85045037	0	1	8263	0
chr2	85038311	85039593	CD4_Plagnol_resting.58129	0	.	85038311	85039593	0	1	1282	0
chr2	85038339	85039670	melanoma_Garraway_short_term_cultures.62616	0	.	85038339	85039670	0	1	1331	0
chr2	85038348	85039596	CD4_Plagnol_activated.59659	0	.	85038348	85039596	0	1	1248	0
chr2	85038723	85039612	A549_Myers.79117	0	.	85038723	85039612	0	1	889	0
chr2	85038743	85039582	HepG2_Caltech_ENCODE.34323	0	.	85038743	85039582	0	1	839	0
chr2	85038786	85039623	H9_polyA+.41364	0	.	85038786	85039623	0	1	837	0
chr2	85039237	85039679	kidney_Gilad.76742	0	.	85039237	85039679	0	1	442	0
chr2	85041576	85042022	melanoma_Garraway_short_term_cultures.62618	0	.	85041576	85042022	0	1	446	0
chr2	85041841	85051372	REMC_MyoepithelialBreast.82305	0	-	85041841	85051372	0	2	622,7823	0,1708
chr2	85041961	85047999	REMC_BreastStem.45150	0	-	85041961	85047999	0	3	502,2112,544	0,950,5494
chr2	85042075	85044942	HeLa_polyA+_Chen.32818	0	.	85042075	85044942	0	1	2867	0
chr2	85042186	85044601	H9_polyA+.41371	0	.	85042186	85044601	0	1	2415	0
chr2	85042199	85044967	melanoma_Garraway_short_term_cultures.62619	0	.	85042199	85044967	0	1	2768	0
chr2	85042211	85045011	HepG2_Caltech_ENCODE.34326	0	.	85042211	85045011	0	1	2800	0
chr2	85042861	85044890	K562.41262	0	.	85042861	85044890	0	1	2029	0
chr2	85042977	85044463	CD4_Plagnol_activated.59663	0	.	85042977	85044463	0	1	1486	0
chr2	85042986	85044902	MeWo_Garraway.33500	0	.	85042986	85044902	0	1	1916	0
chr2	85042987	85044697	MCF7_Burge_Thompson.29272	0	.	85042987	85044697	0	1	1710	0
chr2	85043185	85044861	prostate_normal.53893	0	.	85043185	85044861	0	1	1676	0
chr2	85043418	85044429	CD4_Plagnol_resting.58132	0	.	85043418	85044429	0	1	1011	0
chr2	85043502	85044897	liver_polyA+.118654	0	.	85043502	85044897	0	1	1395	0
chr2	85043860	85044467	NEC_from_H9.68494	0	.	85043860	85044467	0	1	607	0
chr2	85045048	85046324	HeLa_polyA+_Chen.32820	0	.	85045048	85046324	0	1	1276	0
chr2	85045110	85046381	REMC_BreastStem.45151	0	.	85045110	85046381	0	1	1271	0
chr2	85045141	85047314	HepG2_Caltech_ENCODE.34327	0	.	85045141	85047314	0	1	2173	0
chr2	85045144	85046154	CD4_Plagnol_activated.59665	0	.	85045144	85046154	0	1	1010	0
chr2	85045153	85046648	melanoma_Garraway_short_term_cultures.62620	0	.	85045153	85046648	0	1	1495	0
chr2	85045174	85046284	MeWo_Garraway.33501	0	.	85045174	85046284	0	1	1110	0
chr2	85045196	85046481	BT20_Thompson.20210	0	.	85045196	85046481	0	1	1285	0
chr2	85045522	85046333	K562.41266	0	.	85045522	85046333	0	1	811	0
chr2	85045541	85046165	H9_polyA+.41373	0	.	85045541	85046165	0	1	624	0
chr2	85144728	85147981	HIT000097936	0	-	85144728	85147981	0	2	585,2565	0,688
chr2	85144767	85147981	ENST00000508627	0	-	85144767	85147981	0	2	546,2565	0,649
chr2	85392396	85392957	BT474_Burge_Thompson.32057	0	.	85392396	85392957	0	1	561	0
chr2	85393758	85394614	kidney_Gilad.76793	0	-	85393758	85394614	0	2	39,493	0,363
chr2	85394155	85394864	HeLa_polyA+_Chen.32828	0	.	85394155	85394864	0	1	709	0
chr2	85394162	85394589	A549_Myers.79229	0	.	85394162	85394589	0	1	427	0
chr2	85394178	85394636	lymph_node_Burge.46210	0	.	85394178	85394636	0	1	458	0
chr2	85394181	85394635	HME_Burge.37687	0	.	85394181	85394635	0	1	454	0
chr2	85394806	85395599	MeWo_Garraway.33521	0	.	85394806	85395599	0	1	793	0
chr2	85394964	85395578	A549_Myers.79230	0	.	85394964	85395578	0	1	614	0
chr2	85395096	85395563	brain_AmbionMAQC.41199	0	.	85395096	85395563	0	1	467	0
chr2	85411732	85413085	REMC_BreastStem.45170	0	.	85411732	85413085	0	1	1353	0
chr2	85519901	85521607	HIT000098843	0	-	85519901	85521607	0	1	1706	0
chr2	85520380	85520931	H1_polyA+.104636	0	.	85520380	85520931	0	1	551	0
chr2	85526929	85527231	A549_Myers.79208	0	.	85526929	85527231	0	1	302	0
chr2	85529742	85530158	A549_Myers.79211	0	.	85529742	85530158	0	1	416	0
chr2	85539251	85539553	A549_Myers.79214	0	.	85539251	85539553	0	1	302	0
chr2	85578081	85578686	K562.41279	0	.	85578081	85578686	0	1	605	0
chr2	85618087	85619520	HIT000087328	0	-	85618087	85619520	0	1	1433	0
chr2	85731745	85732407	B_cells_Cheung.175123	0	.	85731745	85732407	0	1	662	0
chr2	85731766	85732392	CD4_Plagnol_activated.59970	0	.	85731766	85732392	0	1	626	0
chr2	85756032	85756355	B_cells_Cheung.175136	0	.	85756032	85756355	0	1	323	0
chr2	85759028	85760230	A549_Myers.79249	0	.	85759028	85760230	0	1	1202	0
chr2	85760292	85761636	A549_Myers.79250	0	+	85760292	85761636	0	2	77,282	0,1062
chr2	85790500	85794199	HIT000013687	0	+	85790500	85794199	0	3	65,628,1376	0,1549,2323
chr2	85792255	85796656	Rinn_00004835	0	+	85792255	85796656	0	2	106,846	0,3555
chr2	85794573	85795042	A549_Myers.79258	0	.	85794573	85795042	0	1	469	0
chr2	85812332	85821179	Rinn_00004324	0	-	85812332	85821179	0	2	22,410	0,8437
chr2	85814675	85815056	A549_Myers.79263	0	.	85814675	85815056	0	1	381	0
chr2	85821989	85822735	A549_Myers.79265	0	.	85821989	85822735	0	1	746	0
chr2	85823154	85823599	A549_Myers.79266	0	.	85823154	85823599	0	1	445	0
chr2	85826931	85827353	A549_Myers.79268	0	.	85826931	85827353	0	1	422	0
chr2	85873639	85874012	A549_Myers.79291	0	.	85873639	85874012	0	1	373	0
chr2	85875978	85876516	A549_Myers.79293	0	.	85875978	85876516	0	1	538	0
chr2	85876662	85876990	A549_Myers.79294	0	.	85876662	85876990	0	1	328	0
chr2	85877419	85878293	melanoma_Garraway_short_term_cultures.62709	0	.	85877419	85878293	0	1	874	0
chr2	85877526	85878313	prostate_carcinoma.89592	0	.	85877526	85878313	0	1	787	0
chr2	85884680	85885358	prostate_carcinoma.89595	0	.	85884680	85885358	0	1	678	0
chr2	85892215	85892583	A549_Myers.79302	0	.	85892215	85892583	0	1	368	0
chr2	85904488	85905630	melanoma_Garraway_short_term_cultures.62710	0	.	85904488	85905630	0	1	1142	0
chr2	85974320	85975214	melanoma_Garraway_short_term_cultures.62732	0	.	85974320	85975214	0	1	894	0
chr2	85978096	85978784	prostate_carcinoma.89612	0	.	85978096	85978784	0	1	688	0
chr2	85978251	85978926	brain_AmbionMAQC.41059	0	.	85978251	85978926	0	1	675	0
chr2	85978334	85978850	melanoma_Garraway_short_term_cultures.62734	0	.	85978334	85978850	0	1	516	0
chr2	85982191	85985526	Rinn_00004838	0	+	85982191	85985526	0	2	954,1022	0,2313
chr2	85983955	85985437	Rinn_00005192	0	-	85983955	85985437	0	2	331,723	0,759
chr2	85984034	85985231	B_Cells_Pritchard.2823483	0	.	85984034	85985231	0	1	1197	0
chr2	85984135	85985432	prostate_carcinoma.89609	0	.	85984135	85985432	0	1	1297	0
chr2	85984322	85985622	melanoma_Garraway_short_term_cultures.62737	0	.	85984322	85985622	0	1	1300	0
chr2	85984551	85985305	brain_AmbionMAQC.41062	0	.	85984551	85985305	0	1	754	0
chr2	86005018	86006237	melanoma_Garraway_short_term_cultures.62746	0	.	86005018	86006237	0	1	1219	0
chr2	86007589	86010201	HIT000005185	0	-	86007589	86010201	0	1	2612	0
chr2	86034869	86035610	ZR751_Thompson.22138	0	.	86034869	86035610	0	1	741	0
chr2	86059442	86060008	B_Cells_Pritchard.2823717	0	.	86059442	86060008	0	1	566	0
chr2	86076998	86077462	B_Cells_Pritchard.2823805	0	.	86076998	86077462	0	1	464	0
chr2	86092249	86092719	A549_Myers.79360	0	.	86092249	86092719	0	1	470	0
chr2	86092934	86093268	A549_Myers.79361	0	.	86092934	86093268	0	1	334	0
chr2	86093279	86094105	BT474_Burge_Thompson.32051	0	.	86093279	86094105	0	1	826	0
chr2	86093304	86097685	REMC_BreastStem.45191	0	.	86093304	86097685	0	1	4381	0
chr2	86093747	86097030	REMC_LuminalBreast.88841	0	.	86093747	86097030	0	1	3283	0
chr2	86097119	86100205	REMC_LuminalBreast.88842	0	.	86097119	86100205	0	1	3086	0
chr2	86098379	86099909	REMC_BreastStem.45193	0	.	86098379	86099909	0	1	1530	0
chr2	86098581	86100156	BT474_Burge_Thompson.32052	0	.	86098581	86100156	0	1	1575	0
chr2	86098594	86099055	A549_Myers.79590	0	.	86098594	86099055	0	1	461	0
chr2	86100384	86104509	BT474_Burge_Thompson.32148	0	.	86100384	86104509	0	1	4125	0
chr2	86100551	86105591	B_cells_Cheung.175209	0	.	86100551	86105591	0	1	5040	0
chr2	86100675	86104403	HeLa_polyA+_Chen.32878	0	.	86100675	86104403	0	1	3728	0
chr2	86100808	86104399	MCF7_Burge_Thompson.29309	0	.	86100808	86104399	0	1	3591	0
chr2	86100809	86102128	HIT000265050	0	-	86100809	86102128	0	1	1319	0
chr2	86100812	86104401	MCF10A_Thompson.19650	0	.	86100812	86104401	0	1	3589	0
chr2	86100818	86105542	ZR751_Thompson.22172	0	.	86100818	86105542	0	1	4724	0
chr2	86100849	86104502	NR_026984	0	-	86100849	86104502	0	1	3653	0
chr2	86100853	86105543	MeWo_Garraway.33620	0	.	86100853	86105543	0	1	4690	0
chr2	86100861	86104418	CD4_Plagnol_activated.59789	0	.	86100861	86104418	0	1	3557	0
chr2	86100861	86104421	MDAMB231_Thompson.20290	0	.	86100861	86104421	0	1	3560	0
chr2	86100875	86104378	brain_AmbionMAQC.41079	0	.	86100875	86104378	0	1	3503	0
chr2	86100884	86104421	BT20_Thompson.20242	0	.	86100884	86104421	0	1	3537	0
chr2	86100959	86104402	K562.41310	0	.	86100959	86104402	0	1	3443	0
chr2	86100968	86104386	T47D_Burge_Thompson.27005	0	.	86100968	86104386	0	1	3418	0
chr2	86101049	86104492	prostate_carcinoma.89625	0	-	86101049	86104492	0	2	2255,896	0,2547
chr2	86101197	86104426	melanoma_Garraway_short_term_cultures.62750	0	.	86101197	86104426	0	1	3229	0
chr2	86101221	86104416	CD4_Plagnol_resting.58194	0	.	86101221	86104416	0	1	3195	0
chr2	86101247	86103256	liver_polyA+.118868	0	.	86101247	86103256	0	1	2009	0
chr2	86101291	86103558	MeI_Garraway.16156	0	.	86101291	86103558	0	1	2267	0
chr2	86101403	86103585	NEC_from_H9.68597	0	.	86101403	86103585	0	1	2182	0
chr2	86101523	86104146	HIT000004086	0	-	86101523	86104146	0	1	2623	0
chr2	86101536	86102774	skeletal_muscle_Burge.26906	0	.	86101536	86102774	0	1	1238	0
chr2	86101553	86102266	kidney_Gilad.76897	0	.	86101553	86102266	0	1	713	0
chr2	86101580	86102582	MB435_Burge.39896	0	.	86101580	86102582	0	1	1002	0
chr2	86101624	86102187	colon_Burge.34966	0	.	86101624	86102187	0	1	563	0
chr2	86101667	86102234	HME_Burge.37770	0	.	86101667	86102234	0	1	567	0
chr2	86102751	86103122	HeLa_Bartel_WT_32hr.10936	0	.	86102751	86103122	0	1	371	0
chr2	86103725	86104359	MeI_Garraway.16157	0	.	86103725	86104359	0	1	634	0
chr2	86509261	86510195	B_Cells_Pritchard.2824525	0	.	86509261	86510195	0	1	934	0
chr2	86576064	86577279	REMC_BreastStem.45236	0	.	86576064	86577279	0	1	1215	0
chr2	86576142	86576628	CD4_Plagnol_resting.58243	0	.	86576142	86576628	0	1	486	0
chr2	86576145	86577610	CD4_Plagnol_activated.59835	0	.	86576145	86577610	0	1	1465	0
chr2	86576173	86577089	melanoma_Garraway_short_term_cultures.62795	0	.	86576173	86577089	0	1	916	0
chr2	86576189	86577296	H1_polyA+.104730	0	.	86576189	86577296	0	1	1107	0
chr2	86580168	86581307	HeLa_polyA+_Chen.32914	0	.	86580168	86581307	0	1	1139	0
chr2	86580226	86583285	HIT000017724	0	+	86580226	86583285	0	2	865,2154	0,905
chr2	86580250	86582131	H9_polyA+.41542	0	.	86580250	86582131	0	1	1881	0
chr2	86580270	86581944	MCF10A_Thompson.19710	0	.	86580270	86581944	0	1	1674	0
chr2	86580633	86581915	melanoma_Garraway_short_term_cultures.62798	0	.	86580633	86581915	0	1	1282	0
chr2	86581919	86582727	HeLa_polyA+_Chen.32915	0	.	86581919	86582727	0	1	808	0
chr2	86582052	86582871	T47D_Burge_Thompson.27048	0	.	86582052	86582871	0	1	819	0
chr2	86582180	86582662	colon_Burge.35021	0	.	86582180	86582662	0	1	482	0
chr2	86582196	86582655	H9_polyA+.41543	0	.	86582196	86582655	0	1	459	0
chr2	86890035	86890787	brain_AmbionMAQC.41145	0	.	86890035	86890787	0	1	752	0
chr2	86890048	86890525	MCF7_Burge_Thompson.29368	0	.	86890048	86890525	0	1	477	0
chr2	86890143	86890630	A549_Myers.79416	0	.	86890143	86890630	0	1	487	0
chr2	87557247	87558001	REMC_LuminalBreast.88974	0	.	87557247	87558001	0	1	754	0
chr2	87560545	87561997	REMC_MyoepithelialBreast.82559	0	.	87560545	87561997	0	1	1452	0
chr2	87561401	87562020	REMC_BreastStem.45261	0	.	87561401	87562020	0	1	619	0
chr2	87561403	87562005	REMC_LuminalBreast.88980	0	.	87561403	87562005	0	1	602	0
chr2	87562818	87564255	REMC_MyoepithelialBreast.82561	0	.	87562818	87564255	0	1	1437	0
chr2	87564663	87565023	REMC_LuminalBreast.88985	0	.	87564663	87565023	0	1	360	0
chr2	87569168	87570706	REMC_MyoepithelialBreast.82567	0	.	87569168	87570706	0	1	1538	0
chr2	87569539	87570013	REMC_LuminalBreast.88992	0	.	87569539	87570013	0	1	474	0
chr2	87571183	87571582	REMC_MyoepithelialBreast.82568	0	.	87571183	87571582	0	1	399	0
chr2	87597838	87598267	REMC_MyoepithelialBreast.82587	0	.	87597838	87598267	0	1	429	0
chr2	87598840	87599150	REMC_BreastStem.45279	0	.	87598840	87599150	0	1	310	0
chr2	87666081	87669874	HIT000043472	0	+	87666081	87669874	0	1	3793	0
chr2	87669143	87669691	K562.41410	0	.	87669143	87669691	0	1	548	0
chr2	87669249	87669669	REMC_LuminalBreast.89025	0	.	87669249	87669669	0	1	420	0
chr2	87669364	87669693	REMC_MyoepithelialBreast.82618	0	.	87669364	87669693	0	1	329	0
chr2	87753455	87753759	REMC_MyoepithelialBreast.82627	0	.	87753455	87753759	0	1	304	0
chr2	88083685	88084038	A549_Myers.79424	0	.	88083685	88084038	0	1	353	0
chr2	88102446	88103412	REMC_LuminalBreast.89034	0	.	88102446	88103412	0	1	966	0
chr2	88220503	88221463	H1_polyA+.104796	0	.	88220503	88221463	0	1	960	0
chr2	88270449	88271710	REMC_LuminalBreast.89037	0	.	88270449	88271710	0	1	1261	0
chr2	88276598	88277624	HepG2_Caltech_ENCODE.34423	0	.	88276598	88277624	0	1	1026	0
chr2	88363560	88363930	A549_Myers.79435	0	.	88363560	88363930	0	1	370	0
chr2	88430886	88431446	B_Cells_Pritchard.2826873	0	.	88430886	88431446	0	1	560	0
chr2	88431451	88432183	A549_Myers.79436	0	.	88431451	88432183	0	1	732	0
chr2	88431454	88432566	H1_polyA+.104806	0	.	88431454	88432566	0	1	1112	0
chr2	88434768	88435277	H1_polyA+.104808	0	.	88434768	88435277	0	1	509	0
chr2	88515007	88515853	REMC_MyoepithelialBreast.82658	0	.	88515007	88515853	0	1	846	0
chr2	88515957	88518274	REMC_MyoepithelialBreast.82659	0	.	88515957	88518274	0	1	2317	0
chr2	88519915	88525141	REMC_MyoepithelialBreast.82660	0	.	88519915	88525141	0	1	5226	0
chr2	88618008	88630913	pHIT000004598	0	+	88618008	88630913	0	3	57,51,261	0,2225,12644
chr2	88621466	88623683	H1_polyA+.104845	0	.	88621466	88623683	0	1	2217	0
chr2	88711383	88711867	prostate_normal.54055	0	.	88711383	88711867	0	1	484	0
chr2	88711485	88711846	liver_polyA+.119081	0	.	88711485	88711846	0	1	361	0
chr2	88713084	88713555	B_Cells_Pritchard.2827671	0	.	88713084	88713555	0	1	471	0
chr2	88721496	88722231	BT474_Burge_Thompson.32123	0	.	88721496	88722231	0	1	735	0
chr2	88721619	88722031	ZR751_Thompson.22193	0	.	88721619	88722031	0	1	412	0
chr2	88753445	88755626	H1_polyA+.104871	0	.	88753445	88755626	0	1	2181	0
chr2	88754361	88755615	K562.41399	0	.	88754361	88755615	0	1	1254	0
chr2	88755740	88756252	K562.41400	0	.	88755740	88756252	0	1	512	0
chr2	88755751	88757140	B_cells_Cheung.175516	0	.	88755751	88757140	0	1	1389	0
chr2	88755765	88756428	B_Cells_Pritchard.2827773	0	.	88755765	88756428	0	1	663	0
chr2	88757252	88765789	H1_polyA+.104873	0	.	88757252	88765789	0	1	8537	0
chr2	88757269	88757677	B_Cells_Pritchard.2827777	0	.	88757269	88757677	0	1	408	0
chr2	88758710	88761057	melanoma_Garraway_short_term_cultures.62839	0	.	88758710	88761057	0	1	2347	0
chr2	88758933	88760841	MIP101.62587	0	.	88758933	88760841	0	1	1908	0
chr2	88759021	88763126	B_cells_Cheung.175521	0	.	88759021	88763126	0	1	4105	0
chr2	88759058	88762258	prostate_carcinoma.89757	0	.	88759058	88762258	0	1	3200	0
chr2	88759171	88762085	HepG2_Caltech_ENCODE.34442	0	.	88759171	88762085	0	1	2914	0
chr2	88759399	88769786	B_Cells_Pritchard.2827869	0	+	88759399	88769786	0	4	3677,2414,923,166	0,6520,9091,10221
chr2	88759865	88760559	brain_AmbionMAQC.41165	0	.	88759865	88760559	0	1	694	0
chr2	88759882	88760728	prostate_normal.54058	0	.	88759882	88760728	0	1	846	0
chr2	88761074	88762264	MIP101.62588	0	.	88761074	88762264	0	1	1190	0
chr2	88765255	88769406	HepG2_Caltech_ENCODE.34444	0	.	88765255	88769406	0	1	4151	0
chr2	88765927	88769747	H1_polyA+.104874	0	.	88765927	88769747	0	1	3820	0
chr2	88765927	88767052	MIP101.62591	0	.	88765927	88767052	0	1	1125	0
chr2	88765931	88768340	B_cells_Cheung.175523	0	.	88765931	88768340	0	1	2409	0
chr2	88767660	88768468	melanoma_Garraway_short_term_cultures.62841	0	.	88767660	88768468	0	1	808	0
chr2	88844721	88845378	B_Cells_Pritchard.2827981	0	.	88844721	88845378	0	1	657	0
chr2	88845458	88845977	pHIT000004601	0	+	88845458	88845977	0	1	519	0
chr2	88888859	88892087	HIT000045876	0	+	88888859	88892087	0	1	3228	0
chr2	88890818	88893214	B_cells_Cheung.176343	0	.	88890818	88893214	0	1	2396	0
chr2	88890860	88899061	B_Cells_Pritchard.2828093	0	-	88890860	88899061	0	2	1486,159	0,8042
chr2	88891098	88899059	HIT000302610	0	-	88891098	88899059	0	2	1226,157	0,7804
chr2	88896054	88897542	B_cells_Cheung.176346	0	.	88896054	88897542	0	1	1488	0
chr2	88898693	88899297	B_cells_Cheung.176347	0	.	88898693	88899297	0	1	604	0
chr2	88911840	88915611	B_Cells_Pritchard.2828143	0	.	88911840	88915611	0	1	3771	0
chr2	88911840	88913363	prostate_carcinoma.89774	0	.	88911840	88913363	0	1	1523	0
chr2	88925596	88931108	B_Cells_Pritchard.2828167	0	.	88925596	88931108	0	1	5512	0
chr2	88927602	88929693	B_cells_Cheung.176357	0	.	88927602	88929693	0	1	2091	0
chr2	88929801	88931108	B_cells_Cheung.176358	0	.	88929801	88931108	0	1	1307	0
chr2	88931232	88931630	B_cells_Cheung.176359	0	.	88931232	88931630	0	1	398	0
chr2	88940078	88940642	lymph_node_Burge.46377	0	.	88940078	88940642	0	1	564	0
chr2	88949630	88950526	B_cells_Cheung.175569	0	-	88949630	88950526	0	2	409,90	0,806
chr2	88994246	88994844	B_Cells_Pritchard.2828391	0	.	88994246	88994844	0	1	598	0
chr2	88997907	88998837	B_Cells_Pritchard.2828405	0	.	88997907	88998837	0	1	930	0
chr2	89050803	89053021	pHIT000004606	0	-	89050803	89053021	0	3	369,199,128	0,838,2090
chr2	91033613	91034055	A549_Myers.79479	0	.	91033613	91034055	0	1	442	0
chr2	91058921	91059480	ZR751_Thompson.22197	0	.	91058921	91059480	0	1	559	0
chr2	91058921	91059372	BT474_Burge_Thompson.32130	0	.	91058921	91059372	0	1	451	0
chr2	91059049	91059395	A549_Myers.79484	0	.	91059049	91059395	0	1	346	0
chr2	91123418	91123796	A549_Myers.79485	0	.	91123418	91123796	0	1	378	0
chr2	91123438	91123750	brain_AmbionMAQC.41172	0	.	91123438	91123750	0	1	312	0
chr2	91124824	91125465	BT20_Thompson.20309	0	.	91124824	91125465	0	1	641	0
chr2	91125589	91126166	A549_Myers.79488	0	.	91125589	91126166	0	1	577	0
chr2	91126670	91127959	brain_AmbionMAQC.41176	0	.	91126670	91127959	0	1	1289	0
chr2	91126963	91127694	REMC_BreastStem.45300	0	.	91126963	91127694	0	1	731	0
chr2	91131165	91132089	REMC_MyoepithelialBreast.82683	0	.	91131165	91132089	0	1	924	0
chr2	91131172	91132625	REMC_BreastStem.45301	0	.	91131172	91132625	0	1	1453	0
chr2	91131193	91132396	REMC_LuminalBreast.89049	0	.	91131193	91132396	0	1	1203	0
chr2	91131321	91131952	BT20_Thompson.20314	0	.	91131321	91131952	0	1	631	0
chr2	91131404	91131706	brain_AmbionMAQC.41177	0	.	91131404	91131706	0	1	302	0
chr2	91131417	91131940	prostate_carcinoma.89841	0	.	91131417	91131940	0	1	523	0
chr2	91139882	91140255	A549_Myers.79492	0	.	91139882	91140255	0	1	373	0
chr2	91173551	91183629	HepG2_Caltech_ENCODE.34509	0	.	91173551	91183629	0	1	10078	0
chr2	91175170	91179084	REMC_LuminalBreast.89055	0	.	91175170	91179084	0	1	3914	0
chr2	91175226	91177928	H1_polyA+.104894	0	.	91175226	91177928	0	1	2702	0
chr2	91175369	91184587	REMC_BreastStem.45312	0	.	91175369	91184587	0	1	9218	0
chr2	91175442	91176642	B_cells_Cheung.175665	0	.	91175442	91176642	0	1	1200	0
chr2	91175541	91176620	HeLa_polyA+_Chen.32940	0	.	91175541	91176620	0	1	1079	0
chr2	91175577	91184567	REMC_MyoepithelialBreast.82689	0	.	91175577	91184567	0	1	8990	0
chr2	91175631	91176104	prostate_carcinoma.89913	0	.	91175631	91176104	0	1	473	0
chr2	91175653	91176625	prostate_normal.54094	0	.	91175653	91176625	0	1	972	0
chr2	91175673	91183591	melanoma_Garraway_short_term_cultures.62852	0	.	91175673	91183591	0	1	7918	0
chr2	91175791	91176623	K562.41426	0	.	91175791	91176623	0	1	832	0
chr2	91175838	91176376	brain_AmbionMAQC.41184	0	.	91175838	91176376	0	1	538	0
chr2	91176172	91182890	MIP101.62600	0	-	91176172	91182890	0	3	274,1002,1771	0,1880,4947
chr2	91179141	91185574	REMC_LuminalBreast.89056	0	.	91179141	91185574	0	1	6433	0
chr2	91179220	91182189	BT474_Burge_Thompson.32138	0	.	91179220	91182189	0	1	2969	0
chr2	91179686	91183357	B_cells_Cheung.175669	0	.	91179686	91183357	0	1	3671	0
chr2	91179696	91181905	BT20_Thompson.20319	0	.	91179696	91181905	0	1	2209	0
chr2	91179801	91183338	HeLa_polyA+_Chen.32944	0	.	91179801	91183338	0	1	3537	0
chr2	91179827	91183116	prostate_carcinoma.89906	0	.	91179827	91183116	0	1	3289	0
chr2	91179831	91180150	breast_Burge.37656	0	.	91179831	91180150	0	1	319	0
chr2	91179836	91183332	A549_Myers.79507	0	.	91179836	91183332	0	1	3496	0
chr2	91179856	91181793	MDAMB231_Thompson.20312	0	.	91179856	91181793	0	1	1937	0
chr2	91180990	91182227	K562.41430	0	.	91180990	91182227	0	1	1237	0
chr2	91181079	91183599	H1_polyA+.104897	0	.	91181079	91183599	0	1	2520	0
chr2	91237854	91263863	ENST00000436174	0	-	91237854	91263863	0	10	101,214,53,110,127,165,105,102,117,51	0,10349,11842,12402,13493,13842,19716,20013,25644,25958
chr2	91248204	91266498	ENST00000445955	0	-	91248204	91266498	0	8	217,119,188,198,141,102,117,117	0,2045,3488,3902,9345,9663,15294,18177
chr2	91273297	91275495	XR_041473	0	-	91273297	91275495	0	1	2198	0
chr2	91324050	91324412	A549_Myers.79522	0	.	91324050	91324412	0	1	362	0
chr2	91540544	91543218	Rinn_00004331	0	-	91540544	91543218	0	2	102,434	0,2240
chr2	91601005	91606480	HIT000057783	0	+	91601005	91606480	0	1	5475	0
chr2	94791758	94792241	BT20_Thompson.20330	0	.	94791758	94792241	0	1	483	0
chr2	94792457	94793330	prostate_carcinoma.89863	0	.	94792457	94793330	0	1	873	0
chr2	94792594	94793351	BT20_Thompson.20329	0	.	94792594	94793351	0	1	757	0
chr2	94794411	94796036	BT20_Thompson.20331	0	.	94794411	94796036	0	1	1625	0
chr2	94798505	94798924	BT20_Thompson.20335	0	.	94798505	94798924	0	1	419	0
chr2	94798529	94799319	prostate_carcinoma.89880	0	.	94798529	94799319	0	1	790	0
chr2	94798930	94800055	K562.41450	0	.	94798930	94800055	0	1	1125	0
chr2	94890741	94891143	HepG2_Caltech_ENCODE.34456	0	.	94890741	94891143	0	1	402	0
chr2	94890777	94891159	MIP101.62612	0	.	94890777	94891159	0	1	382	0
chr2	94891539	94892263	K562.41453	0	.	94891539	94892263	0	1	724	0
chr2	94891751	94892202	MIP101.62614	0	.	94891751	94892202	0	1	451	0
chr2	94976354	94976814	K562.41473	0	.	94976354	94976814	0	1	460	0
chr2	94977086	94978957	BT20_Thompson.20376	0	.	94977086	94978957	0	1	1871	0
chr2	95024210	95024673	A549_Myers.79566	0	.	95024210	95024673	0	1	463	0
chr2	95039130	95039674	B_cells_Cheung.175782	0	.	95039130	95039674	0	1	544	0
chr2	95044289	95044660	B_Cells_Pritchard.2830261	0	.	95044289	95044660	0	1	371	0
chr2	95045688	95046265	B_cells_Cheung.175785	0	.	95045688	95046265	0	1	577	0
chr2	95051655	95052240	A549_Myers.79570	0	.	95051655	95052240	0	1	585	0
chr2	95053133	95055041	HIT000047029	0	-	95053133	95055041	0	1	1908	0
chr2	95091266	95091679	A549_Myers.79577	0	.	95091266	95091679	0	1	413	0
chr2	95096316	95096835	B_cells_Cheung.175789	0	.	95096316	95096835	0	1	519	0
chr2	95104376	95105375	CD4_Snyder.66059	0	.	95104376	95105375	0	1	999	0
chr2	95104409	95105857	CD4_Plagnol_activated.59983	0	.	95104409	95105857	0	1	1448	0
chr2	95104409	95105857	CD4_Plagnol_activated.59984	0	+	95104409	95105857	0	2	224,642	0,806
chr2	95106189	95106892	B_Cells_Pritchard.2830407	0	.	95106189	95106892	0	1	703	0
chr2	95106203	95106734	A549_Myers.79578	0	.	95106203	95106734	0	1	531	0
chr2	95114141	95114837	B_cells_Cheung.175794	0	.	95114141	95114837	0	1	696	0
chr2	95222159	95245078	pHIT000099896	0	+	95222159	95245078	0	5	60,43,89,103,1268	0,15107,15963,18933,21651
chr2	95235822	95255149	H1_polyA+.104916	0	+	95235822	95255149	0	5	1487,89,103,90,11339	0,2300,5270,5845,7988
chr2	95236366	95254375	REMC_LuminalBreast.89097	0	+	95236366	95254375	0	4	943,89,100,10565	0,1756,5291,7444
chr2	95236384	95237314	MDAMB468_Thompson.22637	0	.	95236384	95237314	0	1	930	0
chr2	95236385	95241198	B_cells_Cheung.175821	0	+	95236385	95241198	0	3	924,89,106	0,1737,4707
chr2	95236402	95237009	prostate_normal.54143	0	.	95236402	95237009	0	1	607	0
chr2	95236413	95237069	melanoma_Garraway_short_term_cultures.62902	0	.	95236413	95237069	0	1	656	0
chr2	95236427	95236957	CD4_Plagnol_resting.58385	0	.	95236427	95236957	0	1	530	0
chr2	95236540	95237518	A549_Myers.79637	0	.	95236540	95237518	0	1	978	0
chr2	95236984	95237310	H9_polyA+.41601	0	.	95236984	95237310	0	1	326	0
chr2	95237009	95244324	ENST00000425953	0	+	95237009	95244324	0	5	300,89,103,90,514	0,1113,4083,4658,6801
chr2	95237290	95245078	pHIT000099897	0	+	95237290	95245078	0	4	19,89,103,1268	0,832,3802,6520
chr2	95238118	95248535	H9_polyA+.41611	0	+	95238118	95248535	0	4	93,103,90,4725	0,2974,3549,5692
chr2	95241098	95252663	REMC_MyoepithelialBreast.82716	0	+	95241098	95252663	0	3	97,90,8853	0,569,2712
chr2	95241120	95245809	H9_polyA-_Chen.13267	0	+	95241120	95245809	0	3	75,90,1999	0,547,2690
chr2	95241697	95249061	NEC_from_H9.68773	0	+	95241697	95249061	0	4	60,450,3274,136	0,2113,3510,7228
chr2	95241723	95246140	T47D_Burge_Thompson.27117	0	+	95241723	95246140	0	2	34,2330	0,2087
chr2	95241730	95245227	MCF7_Burge_Thompson.29437	0	+	95241730	95245227	0	2	27,1417	0,2080
chr2	95243787	95248577	H1_polyA+.104918	0	.	95243787	95248577	0	1	4790	0
chr2	95243811	95252335	B_cells_Cheung.175822	0	.	95243811	95252335	0	1	8524	0
chr2	95243827	95245857	prostate_carcinoma.89926	0	.	95243827	95245857	0	1	2030	0
chr2	95243846	95244719	melanoma_Garraway_short_term_cultures.62903	0	.	95243846	95244719	0	1	873	0
chr2	95243854	95248548	MDAMB468_Thompson.22640	0	.	95243854	95248548	0	1	4694	0
chr2	95243893	95244557	REMC_BreastStem.45327	0	.	95243893	95244557	0	1	664	0
chr2	95243926	95244227	ovary_Raymond.220909	0	.	95243926	95244227	0	1	301	0
chr2	95243926	95244227	kidney_Raymond.88641	0	.	95243926	95244227	0	1	301	0
chr2	95243926	95244311	testes_Raymond.149955	0	.	95243926	95244311	0	1	385	0
chr2	95243961	95244311	spleen_Raymond.172035	0	.	95243961	95244311	0	1	350	0
chr2	95244118	95244490	CD4_Plagnol_resting.58386	0	.	95244118	95244490	0	1	372	0
chr2	95244166	95244477	brain_AmbionMAQC.41230	0	.	95244166	95244477	0	1	311	0
chr2	95244219	95246087	CD4_Plagnol_activated.60039	0	.	95244219	95246087	0	1	1868	0
chr2	95244392	95245391	MCF10A_Thompson.19738	0	.	95244392	95245391	0	1	999	0
chr2	95244573	95244925	H1_rRNA-depleted_UCSD_REMC.79000	0	.	95244573	95244925	0	1	352	0
chr2	95244587	95245143	brain_AmbionMAQC.41231	0	.	95244587	95245143	0	1	556	0
chr2	95244684	95245227	CD4_Plagnol_resting.58388	0	.	95244684	95245227	0	1	543	0
chr2	95244750	95245140	NEC_from_H9.68774	0	.	95244750	95245140	0	1	390	0
chr2	95245536	95246678	MeWo_Garraway.33688	0	.	95245536	95246678	0	1	1142	0
chr2	95248647	95262659	H1_polyA+.104917	0	-	95248647	95262659	0	2	4340,9535	0,4477
chr2	95248735	95253107	MDAMB468_Thompson.22641	0	.	95248735	95253107	0	1	4372	0
chr2	95248751	95250285	melanoma_Garraway_short_term_cultures.62906	0	.	95248751	95250285	0	1	1534	0
chr2	95248766	95251066	B_Cells_Pritchard.2830945	0	-	95248766	95251066	0	1	2300	0
chr2	95248786	95250731	MCF10A_Thompson.19740	0	.	95248786	95250731	0	1	1945	0
chr2	95248805	95251103	prostate_carcinoma.89929	0	.	95248805	95251103	0	1	2298	0
chr2	95248900	95250279	prostate_normal.54144	0	.	95248900	95250279	0	1	1379	0
chr2	95248919	95251638	CD4_Plagnol_activated.60041	0	.	95248919	95251638	0	1	2719	0
chr2	95249003	95249587	brain_AmbionMAQC.41251	0	.	95249003	95249587	0	1	584	0
chr2	95249236	95249586	H9_polyA-_Chen.13269	0	.	95249236	95249586	0	1	350	0
chr2	95249252	95250393	CD4_Plagnol_resting.58391	0	.	95249252	95250393	0	1	1141	0
chr2	95249381	95249759	HME_Burge.37868	0	.	95249381	95249759	0	1	378	0
chr2	95249697	95250740	HIT000395571	0	-	95249697	95250740	0	1	1043	0
chr2	95249738	95250291	brain_AmbionMAQC.41258	0	.	95249738	95250291	0	1	553	0
chr2	95250358	95252893	MeWo_Garraway.33695	0	.	95250358	95252893	0	1	2535	0
chr2	95251215	95253592	prostate_carcinoma.89930	0	.	95251215	95253592	0	1	2377	0
chr2	95251787	95252185	H9_polyA+.41606	0	.	95251787	95252185	0	1	398	0
chr2	95255847	95259712	REMC_LuminalBreast.89098	0	.	95255847	95259712	0	1	3865	0
chr2	95256673	95258546	REMC_MyoepithelialBreast.82719	0	.	95256673	95258546	0	1	1873	0
chr2	95257086	95257521	brain_AmbionMAQC.41259	0	.	95257086	95257521	0	1	435	0
chr2	95257089	95258559	prostate_carcinoma.89933	0	.	95257089	95258559	0	1	1470	0
chr2	95257246	95259049	MeWo_Garraway.33696	0	.	95257246	95259049	0	1	1803	0
chr2	95270801	95272403	H1_polyA+.104923	0	.	95270801	95272403	0	1	1602	0
chr2	95271009	95271412	B_cells_Cheung.175844	0	.	95271009	95271412	0	1	403	0
chr2	95287677	95290863	H1_polyA+.104926	0	+	95287677	95290863	0	2	1034,1869	0,1317
chr2	95287677	95290863	H1_polyA+.104927	0	.	95287677	95290863	0	1	3186	0
chr2	95288374	95290834	prostate_carcinoma.89935	0	.	95288374	95290834	0	1	2460	0
chr2	95288798	95289322	prostate_normal.54147	0	.	95288798	95289322	0	1	524	0
chr2	95289544	95290102	B_Cells_Pritchard.2830795	0	.	95289544	95290102	0	1	558	0
chr2	95289605	95293122	REMC_LuminalBreast.89101	0	.	95289605	95293122	0	1	3517	0
chr2	95291626	95299368	H1_polyA+.104929	0	.	95291626	95299368	0	1	7742	0
chr2	95293390	95296355	REMC_LuminalBreast.89102	0	.	95293390	95296355	0	1	2965	0
chr2	95293490	95298235	REMC_MyoepithelialBreast.82723	0	.	95293490	95298235	0	1	4745	0
chr2	95294035	95295362	prostate_normal.54149	0	.	95294035	95295362	0	1	1327	0
chr2	95294114	95294834	B_Cells_Pritchard.2830817	0	.	95294114	95294834	0	1	720	0
chr2	95294263	95294612	H9_polyA+.41613	0	.	95294263	95294612	0	1	349	0
chr2	95294673	95295265	brain_AmbionMAQC.41264	0	.	95294673	95295265	0	1	592	0
chr2	95296470	95297550	B_Cells_Pritchard.2830829	0	.	95296470	95297550	0	1	1080	0
chr2	95296741	95297773	prostate_normal.54151	0	.	95296741	95297773	0	1	1032	0
chr2	95297028	95297669	brain_AmbionMAQC.41266	0	.	95297028	95297669	0	1	641	0
chr2	95297214	95297721	B_cells_Cheung.175847	0	.	95297214	95297721	0	1	507	0
chr2	95297849	95298381	prostate_normal.54152	0	.	95297849	95298381	0	1	532	0
chr2	95299515	95301822	H1_polyA+.104930	0	.	95299515	95301822	0	1	2307	0
chr2	95299517	95301798	prostate_normal.54154	0	.	95299517	95301798	0	1	2281	0
chr2	95299802	95300621	B_cells_Cheung.175849	0	.	95299802	95300621	0	1	819	0
chr2	95300383	95301090	brain_AmbionMAQC.41268	0	.	95300383	95301090	0	1	707	0
chr2	95301200	95302170	brain_AmbionMAQC.41269	0	.	95301200	95302170	0	1	970	0
chr2	95322499	95323248	BT474_Burge_Thompson.32164	0	.	95322499	95323248	0	1	749	0
chr2	95323008	95324063	ZR751_Thompson.22259	0	.	95323008	95324063	0	1	1055	0
chr2	95323107	95324154	MCF7_Burge_Thompson.29470	0	.	95323107	95324154	0	1	1047	0
chr2	95323242	95324384	MDAMB468_Thompson.22740	0	.	95323242	95324384	0	1	1142	0
chr2	95323301	95324134	BT474_Burge_Thompson.32165	0	.	95323301	95324134	0	1	833	0
chr2	95323553	95324750	BT20_Thompson.20482	0	.	95323553	95324750	0	1	1197	0
chr2	95323818	95324659	REMC_MyoepithelialBreast.82728	0	.	95323818	95324659	0	1	841	0
chr2	95418527	95418861	A549_Myers.79672	0	.	95418527	95418861	0	1	334	0
chr2	95420303	95420613	B_Cells_Pritchard.2831277	0	.	95420303	95420613	0	1	310	0
chr2	95444057	95446027	K562.41481	0	.	95444057	95446027	0	1	1970	0
chr2	95444482	95446072	HIT000017847	0	+	95444482	95446072	0	1	1590	0
chr2	95444753	95445400	B_cells_Cheung.175877	0	.	95444753	95445400	0	1	647	0
chr2	95552886	95554276	B_Cells_Pritchard.2831363	0	-	95552886	95554276	0	3	283,283,739	0,295,651
chr2	95559240	95561035	BT474_Burge_Thompson.32181	0	.	95559240	95561035	0	1	1795	0
chr2	95559306	95560946	brain_AmbionMAQC.41295	0	.	95559306	95560946	0	1	1640	0
chr2	95559332	95562151	REMC_MyoepithelialBreast.82750	0	.	95559332	95562151	0	1	2819	0
chr2	95559529	95561744	MeWo_Garraway.33716	0	.	95559529	95561744	0	1	2215	0
chr2	95559859	95563426	melanoma_Garraway_short_term_cultures.62937	0	.	95559859	95563426	0	1	3567	0
chr2	95565984	95566664	BT20_Thompson.20365	0	.	95565984	95566664	0	1	680	0
chr2	95565987	95566697	MeWo_Garraway.33715	0	.	95565987	95566697	0	1	710	0
chr2	95566147	95566646	prostate_carcinoma.89981	0	.	95566147	95566646	0	1	499	0
chr2	95566175	95566610	CD4_Plagnol_resting.58398	0	.	95566175	95566610	0	1	435	0
chr2	95566211	95566694	ZR751_Thompson.22236	0	.	95566211	95566694	0	1	483	0
chr2	95567476	95570783	REMC_LuminalBreast.89138	0	.	95567476	95570783	0	1	3307	0
chr2	95568582	95569274	prostate_carcinoma.89982	0	.	95568582	95569274	0	1	692	0
chr2	95568611	95570033	B_cells_Cheung.175885	0	.	95568611	95570033	0	1	1422	0
chr2	95568628	95569216	MDAMB468_Thompson.22668	0	.	95568628	95569216	0	1	588	0
chr2	95568630	95568957	MCF7_Burge_Thompson.29458	0	.	95568630	95568957	0	1	327	0
chr2	95744147	95745185	REMC_LuminalBreast.89143	0	.	95744147	95745185	0	1	1038	0
chr2	95772408	95774480	REMC_LuminalBreast.89154	0	.	95772408	95774480	0	1	2072	0
chr2	95788776	95789935	REMC_LuminalBreast.89156	0	.	95788776	95789935	0	1	1159	0
chr2	95790664	95791664	REMC_LuminalBreast.89157	0	.	95790664	95791664	0	1	1000	0
chr2	95819128	95827321	HIT000497542_01	0	+	95819128	95827321	0	9	75,123,114,74,105,129,672,100,177	0,2506,2779,3591,4077,4391,6835,7819,8016
chr2	95819128	95827321	ENST00000471661	0	+	95819128	95827321	0	9	75,123,114,74,105,129,672,100,177	0,2506,2779,3591,4077,4391,6835,7819,8016
chr2	95819139	95829643	ENST00000417140	0	+	95819139	95829643	0	13	64,123,114,74,105,129,672,100,213,123,83,839,264	0,2495,2768,3580,4066,4380,6824,7808,8005,8609,8902,9311,10240
chr2	95819140	95829643	ENST00000428300	0	+	95819140	95829643	0	14	63,69,114,74,105,129,672,100,213,123,83,119,71,264	0,2548,2767,3579,4065,4379,6823,7807,8004,8608,8901,9310,10078,10239
chr2	95819142	95844708	XR_036906	0	+	95819142	95844708	0	17	97,70,115,75,106,130,101,135,101,214,124,82,120,72,188,58,63	0,2545,2764,3576,4062,4376,6820,7358,7804,8001,8605,8898,9307,10075,10254,10443,25503
chr2	95819142	95829654	XR_037057	0	+	95819142	95829654	0	16	97,70,115,75,106,130,101,135,101,214,124,84,120,72,185,72	0,2545,2764,3576,4062,4376,6820,7358,7804,8001,8605,8898,9307,10075,10254,10440
chr2	95821694	95829641	ENST00000444924	0	+	95821694	95829641	0	14	63,114,74,105,129,100,134,100,213,123,83,119,71,244	0,213,1025,1511,1825,4269,4807,5253,5450,6054,6347,6756,7524,7703
chr2	95823203	95829643	ENST00000458519	0	+	95823203	95829643	0	7	107,129,672,924,83,839,264	0,316,2760,3744,4838,5247,6176
chr2	95828551	95830813	REMC_LuminalBreast.89159	0	.	95828551	95830813	0	1	2262	0
chr2	95833598	95835406	REMC_LuminalBreast.89162	0	.	95833598	95835406	0	1	1808	0
chr2	95836539	95845058	HIT000018062	0	+	95836539	95845058	0	3	238,239,1217	0,6985,7302
chr2	95836539	95845565	HIT000014206	0	+	95836539	95845565	0	2	238,2041	0,6985
chr2	95836543	95846237	HIT000014210	0	-	95836543	95846237	0	2	234,2713	0,6981
chr2	95836571	95847010	K562.41504	0	-	95836571	95847010	0	4	206,37,1632,812	0,6824,6953,9627
chr2	95836578	95856456	HIT000027351	0	-	95836578	95856456	0	3	199,96,2781	0,6946,17097
chr2	95837191	95846124	prostate_normal.54182	0	+	95837191	95846124	0	3	179,57,85	0,7031,8848
chr2	95841607	95850800	REMC_LuminalBreast.89464	0	.	95841607	95850800	0	1	9193	0
chr2	95843484	95846317	HepG2_Caltech_ENCODE.34495	0	.	95843484	95846317	0	1	2833	0
chr2	95843895	95846208	HIT000388745	0	+	95843895	95846208	0	1	2313	0
chr2	95843913	95864376	B_Cells_Pritchard.2832073	0	-	95843913	95864376	0	25	269,177,188,93,298,364,227,74,8,297,596,208,442,547,194,594,293,1130,116,169,196,97,159,290,233	0,2395,3207,3660,5327,5881,6295,10564,10668,10822,11172,12366,14120,14651,15289,15597,16560,16918,18275,18771,18997,19318,19434,19837,20230
chr2	95843913	95863430	B_Cells_Pritchard.2832075	0	+	95843913	95863430	0	17	359,591,8,94,105,252,213,49,8,726,255,9,197,114,30,97,60	0,1795,2414,3243,3648,3786,5322,6584,11183,11191,12320,13996,18285,18630,18946,19087,19457
chr2	95844531	95850566	REMC_MyoepithelialBreast.82762	0	.	95844531	95850566	0	1	6035	0
chr2	95845868	95847010	K562.41505	0	.	95845868	95847010	0	1	1142	0
chr2	95846746	95850570	REMC_BreastStem.45345	0	.	95846746	95850570	0	1	3824	0
chr2	95848031	95849554	B_cells_Cheung.175904	0	.	95848031	95849554	0	1	1523	0
chr2	95848703	95849537	HepG2_Caltech_ENCODE.34498	0	.	95848703	95849537	0	1	834	0
chr2	95853750	95863472	REMC_LuminalBreast.89471	0	+	95853750	95863472	0	2	9095,209	0,9513
chr2	95853750	95867383	REMC_LuminalBreast.89470	0	.	95853750	95867383	0	1	13633	0
chr2	95853758	95854297	REMC_MyoepithelialBreast.82765	0	.	95853758	95854297	0	1	539	0
chr2	95853780	95856858	B_cells_Cheung.175908	0	.	95853780	95856858	0	1	3078	0
chr2	95854388	95856136	melanoma_Garraway_short_term_cultures.62954	0	.	95854388	95856136	0	1	1748	0
chr2	95854729	95856179	HepG2_Caltech_ENCODE.34500	0	.	95854729	95856179	0	1	1450	0
chr2	95854933	95855594	MCF7_Burge_Thompson.29463	0	.	95854933	95855594	0	1	661	0
chr2	95855109	95855601	MIP101.62649	0	.	95855109	95855601	0	1	492	0
chr2	95856619	95857366	HepG2_Caltech_ENCODE.34502	0	.	95856619	95857366	0	1	747	0
chr2	95857865	95864332	REMC_MyoepithelialBreast.82769	0	.	95857865	95864332	0	1	6467	0
chr2	95857976	95860715	REMC_BreastStem.45352	0	.	95857976	95860715	0	1	2739	0
chr2	95858038	95860110	H1_polyA+.104974	0	.	95858038	95860110	0	1	2072	0
chr2	95858131	95858443	MIP101.62652	0	.	95858131	95858443	0	1	312	0
chr2	95858531	95860119	B_cells_Cheung.175909	0	.	95858531	95860119	0	1	1588	0
chr2	95859543	95860099	HeLa_polyA+_Chen.32989	0	.	95859543	95860099	0	1	556	0
chr2	95859563	95860098	melanoma_Garraway_short_term_cultures.62959	0	.	95859563	95860098	0	1	535	0
chr2	95859630	95860070	K562.41489	0	.	95859630	95860070	0	1	440	0
chr2	95859766	95860073	CD4_Plagnol_resting.58406	0	.	95859766	95860073	0	1	307	0
chr2	95860854	95862400	H1_polyA+.104978	0	.	95860854	95862400	0	1	1546	0
chr2	95861049	95862840	HepG2_Caltech_ENCODE.34504	0	.	95861049	95862840	0	1	1791	0
chr2	95861056	95865339	B_cells_Cheung.175913	0	.	95861056	95865339	0	1	4283	0
chr2	95861089	95861879	H9_polyA+.41622	0	.	95861089	95861879	0	1	790	0
chr2	95861453	95864429	REMC_BreastStem.45353	0	.	95861453	95864429	0	1	2976	0
chr2	95861595	95862411	MDAMB468_Thompson.22681	0	.	95861595	95862411	0	1	816	0
chr2	95861823	95862612	melanoma_Garraway_short_term_cultures.62961	0	.	95861823	95862612	0	1	789	0
chr2	95861993	95862632	K562.41491	0	.	95861993	95862632	0	1	639	0
chr2	95862517	95863183	H1_polyA+.104979	0	.	95862517	95863183	0	1	666	0
chr2	95862723	95863123	melanoma_Garraway_short_term_cultures.62962	0	.	95862723	95863123	0	1	400	0
chr2	95862742	95863176	brain_AmbionMAQC.41317	0	.	95862742	95863176	0	1	434	0
chr2	95862792	95863169	MDAMB468_Thompson.22682	0	.	95862792	95863169	0	1	377	0
chr2	95863870	95864527	K562.41493	0	.	95863870	95864527	0	1	657	0
chr2	95864153	95864529	CD4_Plagnol_activated.60053	0	.	95864153	95864529	0	1	376	0
chr2	95864183	95864533	brain_AmbionMAQC.41320	0	.	95864183	95864533	0	1	350	0
chr2	95864831	95865242	brain_AmbionMAQC.41321	0	.	95864831	95865242	0	1	411	0
chr2	95865448	95866713	REMC_MyoepithelialBreast.82770	0	.	95865448	95866713	0	1	1265	0
chr2	95865475	95866645	B_cells_Cheung.175911	0	.	95865475	95866645	0	1	1170	0
chr2	95865547	95866587	B_Cells_Pritchard.2832135	0	+	95865547	95866587	0	2	256,784	0,256
chr2	95865593	95866095	H1_polyA+.104981	0	.	95865593	95866095	0	1	502	0
chr2	95865610	95866661	HepG2_Caltech_ENCODE.34506	0	.	95865610	95866661	0	1	1051	0
chr2	95865819	95866658	REMC_BreastStem.45355	0	.	95865819	95866658	0	1	839	0
chr2	95865973	95866497	K562.41494	0	.	95865973	95866497	0	1	524	0
chr2	95866163	95866640	H1_polyA+.104982	0	.	95866163	95866640	0	1	477	0
chr2	95866168	95866513	brain_AmbionMAQC.41323	0	.	95866168	95866513	0	1	345	0
chr2	95866168	95866579	MDAMB468_Thompson.22683	0	.	95866168	95866579	0	1	411	0
chr2	96021981	96022699	REMC_LuminalBreast.89244	0	.	96021981	96022699	0	1	718	0
chr2	96108173	96110106	REMC_LuminalBreast.89291	0	.	96108173	96110106	0	1	1933	0
chr2	96114790	96116040	REMC_LuminalBreast.89293	0	.	96114790	96116040	0	1	1250	0
chr2	96114888	96115830	REMC_MyoepithelialBreast.82798	0	.	96114888	96115830	0	1	942	0
chr2	96131712	96132664	REMC_MyoepithelialBreast.82802	0	.	96131712	96132664	0	1	952	0
chr2	96138884	96140155	REMC_LuminalBreast.89301	0	.	96138884	96140155	0	1	1271	0
chr2	96146687	96147182	B_Cells_Pritchard.2832061	0	.	96146687	96147182	0	1	495	0
chr2	96147356	96148493	prostate_carcinoma.90015	0	.	96147356	96148493	0	1	1137	0
chr2	96147763	96150769	B_Cells_Pritchard.2832067	0	.	96147763	96150769	0	1	3006	0
chr2	96148066	96149188	REMC_BreastStem.45369	0	.	96148066	96149188	0	1	1122	0
chr2	96148567	96149226	prostate_carcinoma.90016	0	.	96148567	96149226	0	1	659	0
chr2	96148683	96149394	B_cells_Cheung.175976	0	.	96148683	96149394	0	1	711	0
chr2	96150342	96151300	prostate_carcinoma.90017	0	.	96150342	96151300	0	1	958	0
chr2	96150536	96151516	CD4_Plagnol_activated.60069	0	.	96150536	96151516	0	1	980	0
chr2	96150879	96151301	B_Cells_Pritchard.2832069	0	.	96150879	96151301	0	1	422	0
chr2	96151420	96152080	B_Cells_Pritchard.2832071	0	.	96151420	96152080	0	1	660	0
chr2	96179372	96181296	B_cells_Cheung.175977	0	.	96179372	96181296	0	1	1924	0
chr2	96179478	96181095	B_Cells_Pritchard.2832183	0	.	96179478	96181095	0	1	1617	0
chr2	96181450	96182212	B_cells_Cheung.175978	0	.	96181450	96182212	0	1	762	0
chr2	96181520	96184446	B_Cells_Pritchard.2832187	0	.	96181520	96184446	0	1	2926	0
chr2	96182516	96185260	B_cells_Cheung.175979	0	.	96182516	96185260	0	1	2744	0
chr2	96184725	96185191	B_Cells_Pritchard.2832191	0	.	96184725	96185191	0	1	466	0
chr2	96185353	96187387	B_cells_Cheung.175980	0	.	96185353	96187387	0	1	2034	0
chr2	96185511	96189492	B_Cells_Pritchard.2832193	0	.	96185511	96189492	0	1	3981	0
chr2	96187459	96189436	B_cells_Cheung.175981	0	.	96187459	96189436	0	1	1977	0
chr2	96191224	96192066	B_cells_Cheung.175985	0	.	96191224	96192066	0	1	842	0
chr2	96191232	96194978	B_Cells_Pritchard.2832199	0	.	96191232	96194978	0	1	3746	0
chr2	96192140	96194978	B_cells_Cheung.175986	0	.	96192140	96194978	0	1	2838	0
chr2	96195546	96212766	B_Cells_Pritchard.2832213	0	-	96195546	96212766	0	2	71,238	0,16982
chr2	96272526	96273062	MDAMB468_Thompson.22749	0	.	96272526	96273062	0	1	536	0
chr2	96272548	96274667	CD4_Plagnol_activated.60181	0	.	96272548	96274667	0	3	577,310,539	0,1052,1580
chr2	96272560	96273212	brain_AmbionMAQC.41605	0	.	96272560	96273212	0	1	652	0
chr2	96273359	96274752	HepG2_Caltech_ENCODE.34600	0	.	96273359	96274752	0	1	1393	0
chr2	96273985	96274712	CD4_Plagnol_resting.60748	0	.	96273985	96274712	0	1	727	0
chr2	96273985	96274628	MCF10A_Thompson.19771	0	.	96273985	96274628	0	1	643	0
chr2	96274103	96274663	MDAMB468_Thompson.22750	0	.	96274103	96274663	0	1	560	0
chr2	96274107	96274723	MeWo_Garraway.33818	0	.	96274107	96274723	0	1	616	0
chr2	96274123	96274594	HeLa_polyA+_Chen.33005	0	.	96274123	96274594	0	1	471	0
chr2	96274126	96274634	melanoma_Garraway_short_term_cultures.62990	0	.	96274126	96274634	0	1	508	0
chr2	96274136	96274645	MIP101.62761	0	.	96274136	96274645	0	1	509	0
chr2	96274148	96274727	H1_polyA+.107353	0	.	96274148	96274727	0	1	579	0
chr2	96274149	96274649	prostate_normal.54280	0	.	96274149	96274649	0	1	500	0
chr2	96274162	96274667	ZR751_Thompson.22243	0	.	96274162	96274667	0	1	505	0
chr2	96274163	96274507	NEC_from_H9.68804	0	.	96274163	96274507	0	1	344	0
chr2	96274188	96274712	MCF7_Burge_Thompson.29497	0	.	96274188	96274712	0	1	524	0
chr2	96274798	96277743	B_cells_Cheung.176003	0	.	96274798	96277743	0	1	2945	0
chr2	96274836	96276933	melanoma_Garraway_short_term_cultures.62991	0	.	96274836	96276933	0	1	2097	0
chr2	96274867	96276907	HepG2_Caltech_ENCODE.34601	0	.	96274867	96276907	0	1	2040	0
chr2	96274909	96276582	MCF10A_Thompson.19772	0	.	96274909	96276582	0	1	1673	0
chr2	96274914	96277046	CD4_Plagnol_activated.60180	0	.	96274914	96277046	0	1	2132	0
chr2	96274918	96275901	ZR751_Thompson.22244	0	.	96274918	96275901	0	1	983	0
chr2	96274921	96276803	MCF7_Burge_Thompson.29498	0	.	96274921	96276803	0	1	1882	0
chr2	96274925	96276919	MIP101.62762	0	.	96274925	96276919	0	1	1994	0
chr2	96274930	96276831	prostate_normal.54281	0	.	96274930	96276831	0	1	1901	0
chr2	96274933	96276897	H1_polyA+.107354	0	.	96274933	96276897	0	1	1964	0
chr2	96274938	96275918	MeWo_Garraway.33819	0	.	96274938	96275918	0	1	980	0
chr2	96274942	96276016	HeLa_polyA+_Chen.33004	0	.	96274942	96276016	0	1	1074	0
chr2	96275070	96275917	BT20_Thompson.20375	0	.	96275070	96275917	0	1	847	0
chr2	96275535	96276104	MDAMB468_Thompson.22687	0	.	96275535	96276104	0	1	569	0
chr2	96275548	96276251	brain_AmbionMAQC.41609	0	.	96275548	96276251	0	1	703	0
chr2	96277167	96277696	ZR751_Thompson.22245	0	.	96277167	96277696	0	1	529	0
chr2	96277182	96277705	CD4_Plagnol_activated.60182	0	.	96277182	96277705	0	1	523	0
chr2	96278011	96278638	BT20_Thompson.20385	0	.	96278011	96278638	0	1	627	0
chr2	96278011	96278640	MDAMB468_Thompson.22700	0	.	96278011	96278640	0	1	629	0
chr2	96278011	96278637	MCF10A_Thompson.19762	0	.	96278011	96278637	0	1	626	0
chr2	96278014	96278619	MDAMB231_Thompson.20363	0	.	96278014	96278619	0	1	605	0
chr2	96278090	96278532	breast_Burge.37693	0	.	96278090	96278532	0	1	442	0
chr2	96278114	96278632	H9_polyA+.41638	0	.	96278114	96278632	0	1	518	0
chr2	96341680	96345987	H1_polyA+.105028	0	.	96341680	96345987	0	1	4307	0
chr2	96349783	96351838	B_Cells_Pritchard.2871869	0	+	96349783	96351838	0	1	2055	0
chr2	96349804	96351523	CD4_Plagnol_activated.60360	0	.	96349804	96351523	0	1	1719	0
chr2	96350689	96351339	prostate_normal.54222	0	.	96350689	96351339	0	1	650	0
chr2	96350758	96351122	testes_Burge.49134	0	.	96350758	96351122	0	1	364	0
chr2	96351208	96351644	A549_Myers.79704	0	.	96351208	96351644	0	1	436	0
chr2	96583760	96585092	CD4_Plagnol_activated.60094	0	.	96583760	96585092	0	1	1332	0
chr2	96583765	96584743	A549_Myers.79732	0	.	96583765	96584743	0	1	978	0
chr2	96583802	96585033	B_Cells_Pritchard.2833109	0	.	96583802	96585033	0	1	1231	0
chr2	96583830	96584893	B_cells_Cheung.176064	0	.	96583830	96584893	0	1	1063	0
chr2	96584099	96585710	REMC_MyoepithelialBreast.82841	0	.	96584099	96585710	0	1	1611	0
chr2	96585847	96593252	REMC_LuminalBreast.89314	0	.	96585847	96593252	0	1	7405	0
chr2	96585960	96588879	REMC_MyoepithelialBreast.82842	0	.	96585960	96588879	0	1	2919	0
chr2	96587376	96588210	CD4_Plagnol_activated.60097	0	.	96587376	96588210	0	1	834	0
chr2	96587549	96588457	prostate_carcinoma.90049	0	.	96587549	96588457	0	1	908	0
chr2	96589278	96590058	B_Cells_Pritchard.2833125	0	.	96589278	96590058	0	1	780	0
chr2	96590731	96594350	MIP101.62700	0	.	96590731	96594350	0	1	3619	0
chr2	96590751	96591175	B_cells_Cheung.176066	0	.	96590751	96591175	0	1	424	0
chr2	96593344	96596560	REMC_LuminalBreast.89315	0	.	96593344	96596560	0	1	3216	0
chr2	96594422	96595250	REMC_MyoepithelialBreast.82888	0	.	96594422	96595250	0	1	828	0
chr2	96594440	96595267	REMC_BreastStem.45550	0	.	96594440	96595267	0	1	827	0
chr2	96594467	96595362	MIP101.62701	0	.	96594467	96595362	0	1	895	0
chr2	96594565	96595276	B_cells_Cheung.176069	0	.	96594565	96595276	0	1	711	0
chr2	96600458	96610719	REMC_LuminalBreast.89318	0	.	96600458	96610719	0	1	10261	0
chr2	96601686	96603372	H1_polyA+.105040	0	.	96601686	96603372	0	1	1686	0
chr2	96602709	96604994	REMC_MyoepithelialBreast.82892	0	.	96602709	96604994	0	1	2285	0
chr2	96602894	96603594	MIP101.62706	0	.	96602894	96603594	0	1	700	0
chr2	96608598	96610609	REMC_MyoepithelialBreast.82896	0	.	96608598	96610609	0	1	2011	0
chr2	96609980	96610495	B_cells_Cheung.176079	0	.	96609980	96610495	0	1	515	0
chr2	96782822	96783286	B_Cells_Pritchard.2833677	0	.	96782822	96783286	0	1	464	0
chr2	96841541	96843651	HeLa_polyA+_Chen.33017	0	-	96841541	96843651	0	2	412,694	0,1416
chr2	96902237	96902772	NEC_from_H9.68929	0	.	96902237	96902772	0	1	535	0
chr2	96902241	96902808	liver_polyA+.119277	0	.	96902241	96902808	0	1	567	0
chr2	96902313	96902707	kidney_Gilad.77196	0	.	96902313	96902707	0	1	394	0
chr2	96902330	96902812	MB435_Burge.40087	0	.	96902330	96902812	0	1	482	0
chr2	96902342	96902698	H1_rRNA-depleted_UCSD_REMC.79178	0	.	96902342	96902698	0	1	356	0
chr2	96902400	96902760	CD4_Plagnol_activated.60138	0	.	96902400	96902760	0	1	360	0
chr2	97109490	97109907	H1_polyA+.105116	0	.	97109490	97109907	0	1	417	0
chr2	97109493	97109888	B_cells_Cheung.176117	0	.	97109493	97109888	0	1	395	0
chr2	97109494	97109916	REMC_BreastStem.45418	0	.	97109494	97109916	0	1	422	0
chr2	97298433	97301221	Rinn_00004341	0	-	97298433	97301221	0	2	52,264	0,2524
chr2	97298632	97299875	Rinn_00004342	0	-	97298632	97299875	0	2	256,156	0,1087
chr2	97311416	97312197	K562.41553	0	.	97311416	97312197	0	1	781	0
chr2	97447966	97457332	ENST00000492960	0	-	97447966	97457332	0	4	332,221,130,2280	0,6348,6864,7086
chr2	97448018	97457332	HIT000092643_03	0	-	97448018	97457332	0	4	280,221,130,2280	0,6296,6812,7034
chr2	97448064	97457772	ENST00000485316	0	-	97448064	97457772	0	2	234,2720	0,6988
chr2	97648785	97651635	B_Cells_Pritchard.2834809	0	-	97648785	97651635	0	4	399,320,517,1050	0,584,960,1800
chr2	97650577	97655016	REMC_MyoepithelialBreast.82938	0	.	97650577	97655016	0	1	4439	0
chr2	97650606	97652846	REMC_BreastStem.45449	0	.	97650606	97652846	0	1	2240	0
chr2	97651121	97653682	HepG2_Caltech_ENCODE.34570	0	.	97651121	97653682	0	1	2561	0
chr2	97651618	97653682	HepG2_Caltech_ENCODE.34571	0	+	97651618	97653682	0	2	25,1751	0,313
chr2	97651774	97653848	H1_polyA+.105149	0	.	97651774	97653848	0	1	2074	0
chr2	97651823	97662617	B_Cells_Pritchard.2834813	0	-	97651823	97662617	0	7	402,852,189,938,3420,1372,870	0,447,1658,2244,3910,7513,9924
chr2	97652254	97652928	brain_AmbionMAQC.41406	0	.	97652254	97652928	0	1	674	0
chr2	97652308	97652951	prostate_normal.54298	0	.	97652308	97652951	0	1	643	0
chr2	97652335	97652970	H9_polyA+.41695	0	.	97652335	97652970	0	1	635	0
chr2	97652393	97653039	melanoma_Garraway_short_term_cultures.63120	0	.	97652393	97653039	0	1	646	0
chr2	97652406	97653153	HeLa_polyA+_Chen.33059	0	.	97652406	97653153	0	1	747	0
chr2	97652640	97685967	HIT000095642	0	+	97652640	97685967	0	10	89,169,106,91,84,103,65,111,151,404	0,1585,4710,5885,6099,19149,20517,29280,31408,32923
chr2	97652640	97685951	ENST00000451384	0	+	97652640	97685951	0	10	89,169,106,87,84,99,72,111,151,388	0,1585,4710,5889,6099,19149,20510,29280,31408,32923
chr2	97652670	97684219	ENST00000458149	0	+	97652670	97684219	0	8	59,116,106,80,99,72,111,171	0,1415,4680,6073,19119,20480,29250,31378
chr2	97655673	97672271	B_Cells_Pritchard.2834811	0	+	97655673	97672271	0	3	3032,84,482	0,3066,16116
chr2	97655956	97685915	K562.41580	0	+	97655956	97685915	0	7	1496,341,84,72,111,1014,352	0,2319,2783,17194,25964,28092,29607
chr2	97655971	97657066	H9_polyA+.41698	0	.	97655971	97657066	0	1	1095	0
chr2	97655974	97657481	HeLa_polyA+_Chen.33063	0	.	97655974	97657481	0	1	1507	0
chr2	97662738	97663587	REMC_MyoepithelialBreast.82939	0	.	97662738	97663587	0	1	849	0
chr2	97662742	97663587	REMC_BreastStem.45451	0	.	97662742	97663587	0	1	845	0
chr2	97662750	97663566	B_cells_Cheung.176570	0	.	97662750	97663566	0	1	816	0
chr2	97662753	97663552	REMC_LuminalBreast.89487	0	.	97662753	97663552	0	1	799	0
chr2	97663775	97664504	REMC_MyoepithelialBreast.82940	0	.	97663775	97664504	0	1	729	0
chr2	97663788	97664525	REMC_LuminalBreast.89488	0	.	97663788	97664525	0	1	737	0
chr2	97672931	97685912	B_Cells_Pritchard.2834851	0	+	97672931	97685912	0	4	291,111,151,349	0,8989,11117,12632
chr2	97673028	97686147	H1_polyA+.105155	0	+	97673028	97686147	0	4	194,26,111,2099	0,4440,8892,11020
chr2	97681774	97686160	prostate_normal.54300	0	+	97681774	97686160	0	2	257,2112	0,2274
chr2	97681914	97685789	MIP101.62816	0	+	97681914	97685789	0	2	117,1741	0,2134
chr2	97681929	97685030	brain_AmbionMAQC.41387	0	+	97681929	97685030	0	2	102,982	0,2119
chr2	97682610	97683641	B_cells_Cheung.176579	0	.	97682610	97683641	0	1	1031	0
chr2	97683053	97683560	REMC_MyoepithelialBreast.82946	0	.	97683053	97683560	0	1	507	0
chr2	97683136	97683633	prostate_carcinoma.90195	0	.	97683136	97683633	0	1	497	0
chr2	97683964	97685030	brain_AmbionMAQC.41388	0	.	97683964	97685030	0	1	1066	0
chr2	97683964	97686160	prostate_normal.54301	0	.	97683964	97686160	0	1	2196	0
chr2	97684045	97684689	T47D_Burge_Thompson.27165	0	.	97684045	97684689	0	1	644	0
chr2	97684055	97685331	melanoma_Garraway_short_term_cultures.63123	0	.	97684055	97685331	0	1	1276	0
chr2	97684078	97684917	H9_polyA+.41699	0	.	97684078	97684917	0	1	839	0
chr2	97685173	97685912	brain_AmbionMAQC.41389	0	.	97685173	97685912	0	1	739	0
chr2	97689813	97690539	BT474_Burge_Thompson.32231	0	.	97689813	97690539	0	1	726	0
chr2	97724068	97726331	B_cells_Cheung.176228	0	.	97724068	97726331	0	1	2263	0
chr2	97724069	97726266	CD4_Plagnol_resting.58767	0	.	97724069	97726266	0	1	2197	0
chr2	97724403	97725246	H1_polyA+.105159	0	.	97724403	97725246	0	1	843	0
chr2	97726468	97731923	REMC_MyoepithelialBreast.83077	0	-	97726468	97731923	0	2	1091,2929	0,2526
chr2	97726468	97731923	REMC_MyoepithelialBreast.83078	0	.	97726468	97731923	0	1	5455	0
chr2	97726496	97727874	CD4_Plagnol_activated.61061	0	.	97726496	97727874	0	1	1378	0
chr2	97726505	97727681	prostate_carcinoma.90132	0	.	97726505	97727681	0	1	1176	0
chr2	97726508	97727864	B_cells_Cheung.176229	0	.	97726508	97727864	0	1	1356	0
chr2	97726508	97727304	melanoma_Garraway_short_term_cultures.63126	0	.	97726508	97727304	0	1	796	0
chr2	97726524	97728125	CD4_Plagnol_resting.58768	0	.	97726524	97728125	0	1	1601	0
chr2	97726546	97727813	REMC_BreastStem.45507	0	.	97726546	97727813	0	1	1267	0
chr2	97728211	97729820	B_cells_Cheung.176230	0	.	97728211	97729820	0	1	1609	0
chr2	97728229	97731905	CD4_Plagnol_activated.61062	0	.	97728229	97731905	0	1	3676	0
chr2	97728273	97729204	prostate_carcinoma.90133	0	.	97728273	97729204	0	1	931	0
chr2	97728611	97729775	REMC_BreastStem.45508	0	.	97728611	97729775	0	1	1164	0
chr2	97729241	97731884	CD4_Plagnol_resting.58770	0	.	97729241	97731884	0	1	2643	0
chr2	97729257	97729810	prostate_carcinoma.90134	0	.	97729257	97729810	0	1	553	0
chr2	97735664	97737365	CD4_Plagnol_activated.61068	0	.	97735664	97737365	0	1	1701	0
chr2	97735716	97737301	CD4_Plagnol_resting.58772	0	.	97735716	97737301	0	1	1585	0
chr2	97736066	97737354	B_Cells_Pritchard.2834887	0	.	97736066	97737354	0	1	1288	0
chr2	97736755	97737376	B_cells_Cheung.176233	0	.	97736755	97737376	0	1	621	0
chr2	97980423	97983266	REMC_MyoepithelialBreast.82947	0	.	97980423	97983266	0	1	2843	0
chr2	97980470	97984822	prostate_carcinoma.90156	0	.	97980470	97984822	0	1	4352	0
chr2	97980667	97984873	B_cells_Cheung.176323	0	.	97980667	97984873	0	1	4206	0
chr2	97980681	97985328	B_Cells_Pritchard.2835527	0	.	97980681	97985328	0	1	4647	0
chr2	97982004	97982806	MIP101.62802	0	.	97982004	97982806	0	1	802	0
chr2	97989983	97990663	B_cells_Cheung.176326	0	.	97989983	97990663	0	1	680	0
chr2	98575048	98576991	REMC_BreastStem.45454	0	.	98575048	98576991	0	1	1943	0
chr2	98575431	98577109	BT20_Thompson.20413	0	.	98575431	98577109	0	1	1678	0
chr2	98579274	98579775	liver_polyA+.119407	0	.	98579274	98579775	0	1	501	0
chr2	98714286	98734453	MDAMB468_Thompson.22756	0	+	98714286	98734453	0	2	304,239	0,19928
chr2	98717069	98718339	B_cells_Cheung.176389	0	.	98717069	98718339	0	1	1270	0
chr2	98717083	98718298	prostate_carcinoma.90198	0	.	98717083	98718298	0	1	1215	0
chr2	98717714	98718275	B_Cells_Pritchard.2837099	0	.	98717714	98718275	0	1	561	0
chr2	98719308	98719820	prostate_carcinoma.90199	0	.	98719308	98719820	0	1	512	0
chr2	98719519	98719930	B_cells_Cheung.176391	0	.	98719519	98719930	0	1	411	0
chr2	98725500	98726645	CD4_Plagnol_resting.58586	0	.	98725500	98726645	0	1	1145	0
chr2	98725512	98726060	BT474_Burge_Thompson.32247	0	.	98725512	98726060	0	1	548	0
chr2	98725519	98726211	prostate_carcinoma.90207	0	.	98725519	98726211	0	1	692	0
chr2	98725524	98726208	MCF7_Burge_Thompson.29558	0	.	98725524	98726208	0	1	684	0
chr2	98725524	98726325	B_cells_Cheung.176398	0	.	98725524	98726325	0	1	801	0
chr2	98725525	98726176	prostate_normal.54361	0	.	98725525	98726176	0	1	651	0
chr2	98725546	98726710	B_Cells_Pritchard.2837125	0	.	98725546	98726710	0	1	1164	0
chr2	98725557	98726201	CD4_Plagnol_activated.60221	0	.	98725557	98726201	0	1	644	0
chr2	98731702	98732595	B_Cells_Pritchard.2837155	0	.	98731702	98732595	0	1	893	0
chr2	98731709	98734682	prostate_carcinoma.90205	0	.	98731709	98734682	0	1	2973	0
chr2	98731729	98732629	B_cells_Cheung.176404	0	.	98731729	98732629	0	1	900	0
chr2	98731730	98732582	prostate_normal.54363	0	.	98731730	98732582	0	1	852	0
chr2	98744401	98746213	prostate_carcinoma.90236	0	.	98744401	98746213	0	1	1812	0
chr2	98745267	98746445	CD4_Plagnol_resting.58588	0	.	98745267	98746445	0	1	1178	0
chr2	98753818	98757253	prostate_normal.54368	0	.	98753818	98757253	0	1	3435	0
chr2	98753819	98758221	prostate_carcinoma.90241	0	.	98753819	98758221	0	1	4402	0
chr2	98754476	98755026	CD4_Plagnol_activated.60225	0	.	98754476	98755026	0	1	550	0
chr2	98757413	98758242	prostate_normal.54369	0	.	98757413	98758242	0	1	829	0
chr2	99488596	99491900	B_Cells_Pritchard.2838829	0	-	99488596	99491900	0	6	131,490,385,219,289,181	0,197,1906,2349,2632,3123
chr2	99493175	99493874	B_cells_Cheung.176587	0	.	99493175	99493874	0	1	699	0
chr2	99507301	99507651	B_Cells_Pritchard.2838913	0	.	99507301	99507651	0	1	350	0
chr2	99512517	99513260	prostate_normal.54447	0	.	99512517	99513260	0	1	743	0
chr2	99514161	99515418	REMC_LuminalBreast.89630	0	.	99514161	99515418	0	1	1257	0
chr2	99519510	99523013	REMC_LuminalBreast.89632	0	.	99519510	99523013	0	1	3503	0
chr2	99523459	99525632	REMC_LuminalBreast.89633	0	.	99523459	99525632	0	1	2173	0
chr2	100220779	100229796	khalil_1092	0	.	100220779	100229796	0	4	108,361,181,457	0,2513,5195,8560
chr2	100223474	100241936	pHIT000004743	0	+	100223474	100241936	0	4	101,127,114,87	0,6531,13075,18375
chr2	100225400	100225844	B_Cells_Pritchard.2841349	0	.	100225400	100225844	0	1	444	0
chr2	100225523	100232156	Rinn_00002951	0	+	100225523	100232156	0	3	256,128,200	0,4481,6433
chr2	100225524	100232156	ENST00000441036	0	+	100225524	100232156	0	3	255,127,199	0,4481,6433
chr2	100225911	100226235	A549_Myers.79934	0	.	100225911	100226235	0	1	324	0
chr2	100243440	100245401	REMC_BreastStem.45521	0	.	100243440	100245401	0	1	1961	0
chr2	100245523	100248208	REMC_BreastStem.45522	0	.	100245523	100248208	0	1	2685	0
chr2	100245523	100248208	REMC_BreastStem.45523	0	-	100245523	100248208	0	2	874,1577	0,1108
chr2	100249595	100250556	REMC_BreastStem.45524	0	.	100249595	100250556	0	1	961	0
chr2	100563342	100563750	B_Cells_Pritchard.2842153	0	+	100563342	100563750	0	1	408	0
chr2	100563348	100563656	B_cells_Cheung.176807	0	.	100563348	100563656	0	1	308	0
chr2	100563366	100563970	CD4_Snyder.66484	0	.	100563366	100563970	0	1	604	0
chr2	100652784	100658932	Rinn_00003340	0	-	100652784	100658932	0	2	281,283	0,5865
chr2	100652785	100658932	ENST00000414965	0	-	100652785	100658932	0	2	280,282	0,5865
chr2	100686212	100687419	REMC_LuminalBreast.89724	0	.	100686212	100687419	0	1	1207	0
chr2	100698729	100699906	REMC_LuminalBreast.89730	0	.	100698729	100699906	0	1	1177	0
chr2	100700945	100709017	REMC_LuminalBreast.89732	0	.	100700945	100709017	0	1	8072	0
chr2	100702636	100703408	REMC_MyoepithelialBreast.83217	0	.	100702636	100703408	0	1	772	0
chr2	100713856	100715730	REMC_LuminalBreast.89735	0	.	100713856	100715730	0	1	1874	0
chr2	100720669	100723432	REMC_LuminalBreast.89738	0	.	100720669	100723432	0	1	2763	0
chr2	100723568	100725905	REMC_LuminalBreast.89739	0	.	100723568	100725905	0	1	2337	0
chr2	100724732	100725992	REMC_BreastStem.45536	0	.	100724732	100725992	0	1	1260	0
chr2	100725231	100725884	REMC_MyoepithelialBreast.83218	0	.	100725231	100725884	0	1	653	0
chr2	100776220	100780171	REMC_LuminalBreast.89741	0	.	100776220	100780171	0	1	3951	0
chr2	100777808	100778644	prostate_carcinoma.90561	0	.	100777808	100778644	0	1	836	0
chr2	100780717	100782480	REMC_LuminalBreast.89742	0	.	100780717	100782480	0	1	1763	0
chr2	100782662	100786359	REMC_LuminalBreast.89743	0	.	100782662	100786359	0	1	3697	0
chr2	100801248	100801814	MB435_Burge.40211	0	.	100801248	100801814	0	1	566	0
chr2	100801283	100801971	prostate_normal.54551	0	.	100801283	100801971	0	1	688	0
chr2	100801340	100801814	prostate_carcinoma.90563	0	.	100801340	100801814	0	1	474	0
chr2	101373106	101373813	melanoma_Garraway_short_term_cultures.63382	0	.	101373106	101373813	0	1	707	0
chr2	101462282	101469716	Rinn_00002954	0	+	101462282	101469716	0	3	105,198,90	0,6029,7344
chr2	101462283	101469716	ENST00000427042	0	+	101462283	101469716	0	3	104,197,89	0,6029,7344
chr2	101608249	101609073	HepG2_Caltech_ENCODE.34748	0	.	101608249	101609073	0	1	824	0
chr2	101613467	101614893	REMC_LuminalBreast.89907	0	.	101613467	101614893	0	1	1426	0
chr2	101879329	101883048	HepG2_Caltech_ENCODE.35352	0	.	101879329	101883048	0	1	3719	0
chr2	101881630	101882216	CD4_Snyder.66605	0	.	101881630	101882216	0	1	586	0
chr2	101882768	101891445	REMC_BreastStem.45614	0	.	101882768	101891445	0	1	8677	0
chr2	101884482	101885374	melanoma_Garraway_short_term_cultures.63388	0	.	101884482	101885374	0	1	892	0
chr2	101894353	101894962	REMC_BreastStem.45615	0	.	101894353	101894962	0	1	609	0
chr2	101897792	101899531	REMC_BreastStem.45618	0	.	101897792	101899531	0	1	1739	0
chr2	101907444	101908834	REMC_BreastStem.45622	0	.	101907444	101908834	0	1	1390	0
chr2	101917987	101919939	REMC_BreastStem.45627	0	.	101917987	101919939	0	1	1952	0
chr2	101918395	101919731	REMC_MyoepithelialBreast.83292	0	.	101918395	101919731	0	1	1336	0
chr2	101921306	101921647	REMC_MyoepithelialBreast.83295	0	.	101921306	101921647	0	1	341	0
chr2	101921622	101921946	REMC_BreastStem.45628	0	.	101921622	101921946	0	1	324	0
chr2	101921779	101922291	REMC_MyoepithelialBreast.83296	0	.	101921779	101922291	0	1	512	0
chr2	101922944	101940776	REMC_LuminalBreast.90197	0	-	101922944	101940776	0	2	7674,9282	0,8550
chr2	101922944	101940776	REMC_LuminalBreast.90198	0	.	101922944	101940776	0	1	17832	0
chr2	101925395	101927746	REMC_MyoepithelialBreast.83299	0	.	101925395	101927746	0	1	2351	0
chr2	101935853	101936545	REMC_MyoepithelialBreast.83304	0	.	101935853	101936545	0	1	692	0
chr2	101942957	101946464	REMC_LuminalBreast.89911	0	.	101942957	101946464	0	1	3507	0
chr2	101942957	101970566	REMC_LuminalBreast.89910	0	+	101942957	101970566	0	3	2105,567,4751	0,4207,22858
chr2	101944949	101970061	ENST00000508786	0	+	101944949	101970061	0	3	113,138,3476	0,2644,21636
chr2	101944949	101970061	HIT000012491	0	+	101944949	101970061	0	3	113,138,3476	0,2644,21636
chr2	101960672	101962776	REMC_LuminalBreast.89919	0	.	101960672	101962776	0	1	2104	0
chr2	101963020	101964028	REMC_LuminalBreast.89920	0	.	101963020	101964028	0	1	1008	0
chr2	101966521	101970533	liver_polyA+.119880	0	+	101966521	101970533	0	4	194,2449,319,212	0,853,3442,3800
chr2	101967301	101969754	BT20_Thompson.20486	0	.	101967301	101969754	0	1	2453	0
chr2	101968574	101969103	lymph_node_Burge.46726	0	.	101968574	101969103	0	1	529	0
chr2	101968614	101969210	kidney_Gilad.77551	0	.	101968614	101969210	0	1	596	0
chr2	101971384	101971883	liver_polyA+.119882	0	.	101971384	101971883	0	1	499	0
chr2	101971384	101971883	kidney_Gilad.77556	0	.	101971384	101971883	0	1	499	0
chr2	102046970	102047377	A549_Myers.80112	0	.	102046970	102047377	0	1	407	0
chr2	102233247	102233724	A549_Myers.80133	0	.	102233247	102233724	0	1	477	0
chr2	102233772	102234091	testes_Burge.49405	0	.	102233772	102234091	0	1	319	0
chr2	102234416	102236082	REMC_MyoepithelialBreast.83328	0	.	102234416	102236082	0	1	1666	0
chr2	102697862	102698345	lymph_node_Burge.46788	0	.	102697862	102698345	0	1	483	0
chr2	102697868	102698357	colon_Burge.35334	0	.	102697868	102698357	0	1	489	0
chr2	102697872	102698297	testes_Burge.49415	0	.	102697872	102698297	0	1	425	0
chr2	102697899	102698467	H1_rRNA-depleted_UCSD_REMC.79444	0	.	102697899	102698467	0	1	568	0
chr2	102883066	102883716	B_cells_Cheung.177110	0	.	102883066	102883716	0	1	650	0
chr2	102914668	102916130	H1_polyA+.105534	0	.	102914668	102916130	0	1	1462	0
chr2	103127145	103127618	B_cells_Cheung.177117	0	.	103127145	103127618	0	1	473	0
chr2	103387859	103388899	K562.41749	0	.	103387859	103388899	0	1	1040	0
chr2	104416156	104503722	ENST00000451400	0	+	104416156	104503722	0	4	1257,1541,343,637	0,72599,84792,86929
chr2	104416156	104503722	HIT000046831	0	+	104416156	104503722	0	4	1257,1541,343,637	0,72599,84792,86929
chr2	104417235	104495646	Rinn_00002650	0	+	104417235	104495646	0	4	178,439,176,715	0,71519,72885,77696
chr2	104417236	104495647	NR_015399	0	+	104417236	104495647	0	4	177,438,175,715	0,71519,72885,77696
chr2	104417242	104495646	Rinn_00004860	0	+	104417242	104495646	0	4	171,269,176,715	0,71512,72878,77689
chr2	104417267	104495666	HIT000025801	0	+	104417267	104495666	0	4	146,438,175,734	0,71488,72854,77665
chr2	104417267	104495647	ENST00000447380	0	+	104417267	104495647	0	4	146,438,175,715	0,71488,72854,77665
chr2	104417342	104495597	HIT000386449	0	+	104417342	104495597	0	4	71,438,175,665	0,71413,72779,77590
chr2	104417371	104495640	HIT000286829	0	+	104417371	104495640	0	4	42,438,175,708	0,71384,72750,77561
chr2	104418910	104495646	Rinn_00004861	0	+	104418910	104495646	0	4	99,269,176,715	0,69844,71210,76021
chr2	104418910	104495646	Rinn_00004862	0	+	104418910	104495646	0	4	99,439,176,715	0,69844,71210,76021
chr2	104486209	104495646	Rinn_00004863	0	+	104486209	104495646	0	4	45,269,176,715	0,2545,3911,8722
chr2	104488758	104495705	brain_AmbionMAQC.41614	0	+	104488758	104495705	0	3	435,175,773	0,1363,6174
chr2	104490086	104495651	Rinn_00003806	0	+	104490086	104495651	0	2	210,720	0,4845
chr2	104494928	104495718	melanoma_Garraway_short_term_cultures.63409	0	.	104494928	104495718	0	1	790	0
chr2	104648328	104649746	ENST00000457400	0	+	104648328	104649746	0	3	173,177,185	0,291,1233
chr2	104729270	104732518	brain_AmbionMAQC.41620	0	-	104729270	104732518	0	2	771,307	0,2941
chr2	104729519	104739111	Rinn_00005218	0	-	104729519	104739111	0	3	522,169,142	0,2691,9450
chr2	104729519	104737537	Rinn_00005217	0	-	104729519	104737537	0	4	522,169,116,89	0,2691,7695,7929
chr2	104729526	104738055	Rinn_00004360	0	-	104729526	104738055	0	5	515,169,116,103,331	0,2684,7688,7922,8198
chr2	104729526	104738645	Rinn_00002759	0	-	104729526	104738645	0	3	515,169,1431	0,2684,7688
chr2	104729527	104738645	ENST00000424321	0	-	104729527	104738645	0	3	514,168,1430	0,2684,7688
chr2	104729527	104738645	HIT000015661	0	-	104729527	104738645	0	3	514,168,1430	0,2684,7688
chr2	104732179	104733206	prostate_carcinoma.90816	0	.	104732179	104733206	0	1	1027	0
chr2	104737214	104738584	prostate_carcinoma.90817	0	.	104737214	104738584	0	1	1370	0
chr2	104737751	104738665	brain_AmbionMAQC.41621	0	.	104737751	104738665	0	1	914	0
chr2	104799248	104799869	brain_AmbionMAQC.41689	0	.	104799248	104799869	0	1	621	0
chr2	104801232	104801815	brain_AmbionMAQC.41690	0	.	104801232	104801815	0	1	583	0
chr2	104807068	104808191	melanoma_Garraway_short_term_cultures.63411	0	.	104807068	104808191	0	1	1123	0
chr2	104818952	104820505	melanoma_Garraway_short_term_cultures.63414	0	.	104818952	104820505	0	1	1553	0
chr2	104818989	104819445	brain_AmbionMAQC.41692	0	.	104818989	104819445	0	1	456	0
chr2	104825090	104828033	brain_AmbionMAQC.41693	0	.	104825090	104828033	0	1	2943	0
chr2	104835966	104836313	A549_Myers.80179	0	.	104835966	104836313	0	1	347	0
chr2	104835988	104836493	melanoma_Garraway_short_term_cultures.63415	0	.	104835988	104836493	0	1	505	0
chr2	104836787	104837180	adipose_Burge.36112	0	.	104836787	104837180	0	1	393	0
chr2	104844346	104845417	brain_AmbionMAQC.41696	0	.	104844346	104845417	0	1	1071	0
chr2	104846135	104847357	brain_AmbionMAQC.41697	0	.	104846135	104847357	0	1	1222	0
chr2	104848386	104855342	ENST00000433433	0	-	104848386	104855342	0	2	2896,207	0,6749
chr2	104848386	104855274	HIT000020353	0	+	104848386	104855274	0	2	2896,139	0,6749
chr2	104852262	104855437	brain_AmbionMAQC.41699	0	-	104852262	104855437	0	2	578,27	0,3148
chr2	104852735	104855485	ENST00000434764	0	-	104852735	104855485	0	2	105,350	0,2400
chr2	104854820	104855314	brain_AmbionMAQC.41700	0	.	104854820	104855314	0	1	494	0
chr2	104855023	104855391	testes_Burge.49422	0	.	104855023	104855391	0	1	368	0
chr2	104855946	104856327	A549_Myers.80183	0	.	104855946	104856327	0	1	381	0
chr2	104861771	104862076	brain_AmbionMAQC.41701	0	.	104861771	104862076	0	1	305	0
chr2	104930988	104931589	prostate_carcinoma.90818	0	.	104930988	104931589	0	1	601	0
chr2	105084667	105085567	B_cells_Cheung.177141	0	.	105084667	105085567	0	1	900	0
chr2	105085086	105085559	A549_Myers.80188	0	.	105085086	105085559	0	1	473	0
chr2	105085094	105102023	pHIT000004774	0	+	105085094	105102023	0	4	248,167,182,126	0,5972,13470,16803
chr2	105085094	105091233	pHIT000099986	0	+	105085094	105091233	0	2	248,167	0,5972
chr2	105085094	105098746	pHIT000073351	0	+	105085094	105098746	0	3	248,167,182	0,5972,13470
chr2	105086090	105087250	REMC_MyoepithelialBreast.83355	0	.	105086090	105087250	0	1	1160	0
chr2	105086552	105088584	REMC_LuminalBreast.89959	0	.	105086552	105088584	0	1	2032	0
chr2	105087350	105088477	REMC_MyoepithelialBreast.83356	0	.	105087350	105088477	0	1	1127	0
chr2	105087543	105087857	B_cells_Cheung.177143	0	.	105087543	105087857	0	1	314	0
chr2	105098279	105100656	REMC_MyoepithelialBreast.83360	0	.	105098279	105100656	0	1	2377	0
chr2	105098571	105101412	REMC_LuminalBreast.89964	0	.	105098571	105101412	0	1	2841	0
chr2	105101963	105102358	B_Cells_Pritchard.2852985	0	.	105101963	105102358	0	1	395	0
chr2	105228111	105228845	prostate_carcinoma.90846	0	.	105228111	105228845	0	1	734	0
chr2	105230676	105231928	MIP101.63051	0	.	105230676	105231928	0	1	1252	0
chr2	105230985	105232019	prostate_carcinoma.90847	0	.	105230985	105232019	0	1	1034	0
chr2	105231125	105231840	B_cells_Cheung.177154	0	.	105231125	105231840	0	1	715	0
chr2	105232271	105233447	prostate_carcinoma.90848	0	.	105232271	105233447	0	1	1176	0
chr2	105232567	105233445	REMC_MyoepithelialBreast.84361	0	.	105232567	105233445	0	1	878	0
chr2	105240691	105242763	B_cells_Cheung.177212	0	.	105240691	105242763	0	1	2072	0
chr2	105335474	105339093	MDAMB468_Thompson.22871	0	.	105335474	105339093	0	1	3619	0
chr2	105337561	105339021	H1_polyA+.105612	0	.	105337561	105339021	0	1	1460	0
chr2	105337578	105339057	melanoma_Garraway_short_term_cultures.63437	0	.	105337578	105339057	0	1	1479	0
chr2	105337638	105338964	K562.41806	0	.	105337638	105338964	0	1	1326	0
chr2	105338535	105339063	BT20_Thompson.20506	0	.	105338535	105339063	0	1	528	0
chr2	105424048	105424858	BT20_Thompson.20512	0	.	105424048	105424858	0	1	810	0
chr2	105562380	105562950	melanoma_Garraway_short_term_cultures.63465	0	.	105562380	105562950	0	1	570	0
chr2	105576002	105576870	MeI_Garraway.16326	0	.	105576002	105576870	0	1	868	0
chr2	105579886	105580252	A549_Myers.80234	0	.	105579886	105580252	0	1	366	0
chr2	105590872	105591500	melanoma_Garraway_short_term_cultures.63475	0	.	105590872	105591500	0	1	628	0
chr2	105899258	105900283	REMC_LuminalBreast.90066	0	.	105899258	105900283	0	1	1025	0
chr2	105904030	105905114	REMC_MyoepithelialBreast.83491	0	.	105904030	105905114	0	1	1084	0
chr2	105907125	105907688	B_cells_Cheung.177236	0	.	105907125	105907688	0	1	563	0
chr2	105907201	105907911	B_Cells_Pritchard.2855105	0	.	105907201	105907911	0	1	710	0
chr2	105918604	105919623	B_Cells_Pritchard.2855197	0	.	105918604	105919623	0	1	1019	0
chr2	105926307	105926943	B_Cells_Pritchard.2855267	0	.	105926307	105926943	0	1	636	0
chr2	105933557	105934177	B_Cells_Pritchard.2855291	0	.	105933557	105934177	0	1	620	0
chr2	105935013	105936296	B_cells_Cheung.177239	0	.	105935013	105936296	0	1	1283	0
chr2	105935051	105938643	B_Cells_Pritchard.2855299	0	.	105935051	105938643	0	1	3592	0
chr2	105935084	105935865	CD4_Plagnol_resting.58820	0	.	105935084	105935865	0	1	781	0
chr2	105935331	105935938	REMC_MyoepithelialBreast.83492	0	.	105935331	105935938	0	1	607	0
chr2	105936483	105937337	CD4_Plagnol_activated.60478	0	.	105936483	105937337	0	1	854	0
chr2	106064712	106073358	REMC_LuminalBreast.90072	0	.	106064712	106073358	0	1	8646	0
chr2	106065213	106074644	REMC_MyoepithelialBreast.83498	0	.	106065213	106074644	0	1	9431	0
chr2	106070937	106073083	CD4_Plagnol_activated.60484	0	.	106070937	106073083	0	1	2146	0
chr2	106071085	106073073	B_Cells_Pritchard.2855717	0	.	106071085	106073073	0	1	1988	0
chr2	106181572	106187512	REMC_LuminalBreast.90101	0	.	106181572	106187512	0	1	5940	0
chr2	106183679	106184501	prostate_carcinoma.90914	0	.	106183679	106184501	0	1	822	0
chr2	106189176	106194883	REMC_LuminalBreast.90102	0	.	106189176	106194883	0	1	5707	0
chr2	106190124	106190917	REMC_MyoepithelialBreast.83529	0	.	106190124	106190917	0	1	793	0
chr2	106195757	106200049	REMC_LuminalBreast.90103	0	.	106195757	106200049	0	1	4292	0
chr2	106258828	106259233	B_Cells_Pritchard.2855923	0	.	106258828	106259233	0	1	405	0
chr2	106293384	106294402	HepG2_Caltech_ENCODE.34829	0	.	106293384	106294402	0	1	1018	0
chr2	106538200	106538814	prostate_carcinoma.90923	0	.	106538200	106538814	0	1	614	0
chr2	106553409	106554087	prostate_carcinoma.90925	0	.	106553409	106554087	0	1	678	0
chr2	106643427	106677781	pHIT000099997	0	+	106643427	106677781	0	2	111,222	0,34132
chr2	106980299	106980708	A549_Myers.80297	0	.	106980299	106980708	0	1	409	0
chr2	107116350	107116869	B_Cells_Pritchard.2857599	0	.	107116350	107116869	0	1	519	0
chr2	107345205	107390217	Rinn_00002970	0	+	107345205	107390217	0	4	61,238,135,186	0,18720,43668,44826
chr2	107512374	107539214	HIT000305544	0	+	107512374	107539214	0	3	213,132,1194	0,2161,25646
chr2	107512374	107539214	ENST00000443205	0	+	107512374	107539214	0	3	213,132,1194	0,2161,25646
chr2	107551871	107552622	K562.41817	0	.	107551871	107552622	0	1	751	0
chr2	107576664	107578239	K562.41827	0	.	107576664	107578239	0	1	1575	0
chr2	107599142	107600153	K562.41832	0	.	107599142	107600153	0	1	1011	0
chr2	107672893	107686625	K562.42051	0	.	107672893	107686625	0	1	13732	0
chr2	107716525	107717165	K562.42077	0	.	107716525	107717165	0	1	640	0
chr2	107722128	107725634	K562.42081	0	.	107722128	107725634	0	1	3506	0
chr2	108027584	108028922	prostate_carcinoma.90943	0	.	108027584	108028922	0	1	1338	0
chr2	108145311	108148037	prostate_carcinoma.90955	0	.	108145311	108148037	0	1	2726	0
chr2	108148275	108151300	prostate_carcinoma.90956	0	.	108148275	108151300	0	1	3025	0
chr2	108203397	108204398	prostate_carcinoma.90959	0	.	108203397	108204398	0	1	1001	0
chr2	108203590	108204349	prostate_normal.54731	0	.	108203590	108204349	0	1	759	0
chr2	108210047	108219480	MIP101.63124	0	.	108210047	108219480	0	1	9433	0
chr2	108211344	108219480	MIP101.63125	0	-	108211344	108219480	0	3	796,1675,1998	0,1429,6138
chr2	108211754	108215093	Rinn_00004374	0	-	108211754	108215093	0	2	352,2321	0,1018
chr2	108211843	108214753	prostate_carcinoma.90960	0	.	108211843	108214753	0	1	2910	0
chr2	108211864	108214114	prostate_normal.54732	0	.	108211864	108214114	0	1	2250	0
chr2	108212112	108215093	Rinn_00004375	0	-	108212112	108215093	0	2	28,2321	0,660
chr2	108212489	108213557	B_cells_Cheung.177315	0	.	108212489	108213557	0	1	1068	0
chr2	108214938	108217629	prostate_carcinoma.90964	0	.	108214938	108217629	0	1	2691	0
chr2	108405175	108405844	B_cells_Cheung.177336	0	.	108405175	108405844	0	1	669	0
chr2	108405299	108405996	B_Cells_Pritchard.2860067	0	.	108405299	108405996	0	1	697	0
chr2	108513273	108513876	B_cells_Cheung.177882	0	.	108513273	108513876	0	1	603	0
chr2	108676046	108676796	REMC_LuminalBreast.90237	0	.	108676046	108676796	0	1	750	0
chr2	108676101	108676793	REMC_BreastStem.45706	0	.	108676101	108676793	0	1	692	0
chr2	108684022	108685248	REMC_BreastStem.45708	0	.	108684022	108685248	0	1	1226	0
chr2	108684456	108686570	REMC_LuminalBreast.90242	0	.	108684456	108686570	0	1	2114	0
chr2	108684460	108685816	REMC_MyoepithelialBreast.83643	0	.	108684460	108685816	0	1	1356	0
chr2	108687060	108687809	REMC_BreastStem.45710	0	.	108687060	108687809	0	1	749	0
chr2	108862288	108864945	BT20_Thompson.20542	0	.	108862288	108864945	0	1	2657	0
chr2	108863135	108864945	MDAMB231_Thompson.20505	0	.	108863135	108864945	0	1	1810	0
chr2	108863150	108865025	REMC_MyoepithelialBreast.83670	0	.	108863150	108865025	0	1	1875	0
chr2	108863743	108866330	REMC_BreastStem.45748	0	.	108863743	108866330	0	1	2587	0
chr2	108863946	108864468	brain_AmbionMAQC.41766	0	.	108863946	108864468	0	1	522	0
chr2	108864201	108864954	ZR751_Thompson.22436	0	.	108864201	108864954	0	1	753	0
chr2	108864231	108864963	MDAMB468_Thompson.22877	0	.	108864231	108864963	0	1	732	0
chr2	108864603	108864948	H1_rRNA-depleted_UCSD_REMC.79641	0	.	108864603	108864948	0	1	345	0
chr2	108864661	108864970	CD4_Plagnol_resting.58893	0	.	108864661	108864970	0	1	309	0
chr2	108864860	108866921	A549_Myers.80356	0	.	108864860	108866921	0	1	2061	0
chr2	108865043	108866919	MIP101.63480	0	.	108865043	108866919	0	1	1876	0
chr2	108865057	108866943	NEC_from_H9.69348	0	.	108865057	108866943	0	1	1886	0
chr2	108865119	108866790	MDAMB468_Thompson.22878	0	.	108865119	108866790	0	1	1671	0
chr2	108865957	108867001	ZR751_Thompson.22438	0	.	108865957	108867001	0	1	1044	0
chr2	108866153	108867018	MCF7_Burge_Thompson.29698	0	.	108866153	108867018	0	1	865	0
chr2	108866192	108866800	prostate_normal.54785	0	.	108866192	108866800	0	1	608	0
chr2	108866194	108867310	brain_AmbionMAQC.41768	0	.	108866194	108867310	0	1	1116	0
chr2	108866310	108867853	MDAMB231_Thompson.20504	0	.	108866310	108867853	0	1	1543	0
chr2	108873154	108876059	H1_polyA+.105808	0	.	108873154	108876059	0	1	2905	0
chr2	108874019	108875346	REMC_MyoepithelialBreast.83673	0	.	108874019	108875346	0	1	1327	0
chr2	108874218	108875427	B_Cells_Pritchard.2861261	0	.	108874218	108875427	0	1	1209	0
chr2	108874273	108874993	B_cells_Cheung.177578	0	.	108874273	108874993	0	1	720	0
chr2	109000611	109002010	MIP101.63280	0	.	109000611	109002010	0	1	1399	0
chr2	109027938	109041032	pHIT000100016	0	-	109027938	109041032	0	3	120,216,66	0,7969,13028
chr2	109029584	109029946	A549_Myers.80369	0	.	109029584	109029946	0	1	362	0
chr2	109110197	109111818	HIT000063226	0	-	109110197	109111818	0	1	1621	0
chr2	109111436	109111772	IMR90_UCSD_REMC.45461	0	-	109111436	109111772	0	1	336	0
chr2	109630072	109632887	pHIT000074221	0	+	109630072	109632887	0	3	86,160,132	0,2091,2683
chr2	109634518	109635040	prostate_carcinoma.91080	0	.	109634518	109635040	0	1	522	0
chr2	109638651	109639155	A549_Myers.80395	0	.	109638651	109639155	0	1	504	0
chr2	109642792	109644059	prostate_carcinoma.91083	0	.	109642792	109644059	0	1	1267	0
chr2	109808154	109808983	REMC_LuminalBreast.90350	0	.	109808154	109808983	0	1	829	0
chr2	110137189	110164930	pHIT000100020	0	-	110137189	110164930	0	17	124,128,63,50,180,76,203,117,202,153,61,124,141,172,88,100,58	0,1837,3079,3489,5062,5578,6231,10664,11529,12758,14716,15133,17255,19867,25200,25595,27683
chr2	110137189	110164930	pHIT000072879	0	-	110137189	110164930	0	16	124,170,63,180,203,117,202,153,55,124,141,172,33,88,64,58	0,167,3079,5062,6231,10664,11529,12758,13720,15133,17255,19867,24296,25200,25595,27683
chr2	110137189	110164930	pHIT000004808	0	-	110137189	110164930	0	16	124,128,63,180,203,117,202,153,61,124,141,172,33,88,100,58	0,1837,3079,5062,6231,10664,11529,12758,14716,15133,17255,19867,24296,25200,25595,27683
chr2	110186083	110186544	A549_Myers.80425	0	.	110186083	110186544	0	1	461	0
chr2	110186610	110187152	A549_Myers.80423	0	.	110186610	110187152	0	1	542	0
chr2	111084961	111086450	ENST00000458252	0	+	111084961	111086450	0	2	280,467	0,1022
chr2	111108566	111109114	H9_polyA+.41951	0	.	111108566	111109114	0	1	548	0
chr2	111108630	111109127	K562.41901	0	.	111108630	111109127	0	1	497	0
chr2	111108644	111108992	melanoma_Garraway_short_term_cultures.63623	0	.	111108644	111108992	0	1	348	0
chr2	111108668	111108985	HeLa_polyA+_Chen.33382	0	.	111108668	111108985	0	1	317	0
chr2	111183615	111190687	HIT000096641	0	+	111183615	111190687	0	2	3855,590	0,6482
chr2	111186118	111186891	B_Cells_Pritchard.2864389	0	.	111186118	111186891	0	1	773	0
chr2	111200362	111200946	B_Cells_Pritchard.2864457	0	.	111200362	111200946	0	1	584	0
chr2	111200506	111201080	H1_polyA+.105936	0	.	111200506	111201080	0	1	574	0
chr2	111643717	111644644	CD4_Plagnol_activated.60594	0	.	111643717	111644644	0	1	927	0
chr2	111646137	111647027	melanoma_Garraway_short_term_cultures.63631	0	.	111646137	111647027	0	1	890	0
chr2	111646552	111647607	REMC_BreastStem.45865	0	.	111646552	111647607	0	1	1055	0
chr2	111650510	111650981	A549_Myers.80481	0	.	111650510	111650981	0	1	471	0
chr2	111655108	111655565	HepG2_Caltech_ENCODE.34907	0	.	111655108	111655565	0	1	457	0
chr2	111656322	111657759	K562.41919	0	.	111656322	111657759	0	1	1437	0
chr2	111656528	111659105	REMC_BreastStem.45867	0	.	111656528	111659105	0	1	2577	0
chr2	111661273	111664043	REMC_LuminalBreast.90386	0	.	111661273	111664043	0	1	2770	0
chr2	111661716	111662518	REMC_BreastStem.45792	0	.	111661716	111662518	0	1	802	0
chr2	111663024	111664103	REMC_BreastStem.45793	0	.	111663024	111664103	0	1	1079	0
chr2	111667092	111669067	REMC_MyoepithelialBreast.84052	0	.	111667092	111669067	0	1	1975	0
chr2	111669961	111671331	K562.42019	0	.	111669961	111671331	0	1	1370	0
chr2	111669965	111671739	HepG2_Caltech_ENCODE.34909	0	.	111669965	111671739	0	1	1774	0
chr2	111669975	111671568	REMC_LuminalBreast.90388	0	.	111669975	111671568	0	1	1593	0
chr2	111670150	111671509	REMC_BreastStem.45795	0	.	111670150	111671509	0	1	1359	0
chr2	111670244	111671970	B_Cells_Pritchard.2866053	0	.	111670244	111671970	0	1	1726	0
chr2	111670305	111671323	MIP101.63367	0	.	111670305	111671323	0	1	1018	0
chr2	111670374	111671289	MCF10A_Thompson.19942	0	.	111670374	111671289	0	1	915	0
chr2	111670476	111671926	prostate_carcinoma.91154	0	.	111670476	111671926	0	1	1450	0
chr2	111670567	111671298	MDAMB231_Thompson.20560	0	.	111670567	111671298	0	1	731	0
chr2	111680907	111715354	REMC_BreastStem.45800	0	-	111680907	111715354	0	5	1802,1534,112,1104,1505	0,1896,26768,31090,32942
chr2	111681825	111682338	CD4_Plagnol_activated.60595	0	.	111681825	111682338	0	1	513	0
chr2	111681828	111682712	prostate_normal.54859	0	.	111681828	111682712	0	1	884	0
chr2	111681829	111682706	CD4_Plagnol_resting.58928	0	.	111681829	111682706	0	1	877	0
chr2	111681829	111682711	brain_AmbionMAQC.41804	0	.	111681829	111682711	0	1	882	0
chr2	111681854	111682407	HeLa_Bartel_WT_12hr.29912	0	.	111681854	111682407	0	1	553	0
chr2	111682810	111721136	khalil_1106	0	.	111682810	111721136	0	8	224,209,177,2018,1023,221,586,644	0,318,11459,12422,26375,27669,28885,37682
chr2	111684667	111686114	REMC_BreastStem.45803	0	.	111684667	111686114	0	1	1447	0
chr2	111690940	111694602	MIP101.63372	0	.	111690940	111694602	0	1	3662	0
chr2	111691238	111692263	REMC_LuminalBreast.90451	0	.	111691238	111692263	0	1	1025	0
chr2	111694783	111697336	REMC_LuminalBreast.90453	0	.	111694783	111697336	0	1	2553	0
chr2	111694888	111697286	MIP101.63373	0	.	111694888	111697286	0	1	2398	0
chr2	111695523	111697295	melanoma_Garraway_short_term_cultures.63642	0	.	111695523	111697295	0	1	1772	0
chr2	111695659	111697281	prostate_carcinoma.91160	0	.	111695659	111697281	0	1	1622	0
chr2	111696497	111697272	MDAMB231_Thompson.20564	0	.	111696497	111697272	0	1	775	0
chr2	111696654	111697281	BT20_Thompson.20573	0	.	111696654	111697281	0	1	627	0
chr2	111696682	111697238	MCF10A_Thompson.19946	0	.	111696682	111697238	0	1	556	0
chr2	111696934	111697248	A549_Myers.80500	0	.	111696934	111697248	0	1	314	0
chr2	111696965	111697290	K562.42031	0	.	111696965	111697290	0	1	325	0
chr2	111696966	111697306	H1_polyA+.105953	0	.	111696966	111697306	0	1	340	0
chr2	111697434	111700593	K562.42032	0	.	111697434	111700593	0	1	3159	0
chr2	111701583	111712985	prostate_carcinoma.91162	0	-	111701583	111712985	0	2	110,1462	0,9940
chr2	111701886	111703034	MIP101.63376	0	.	111701886	111703034	0	1	1148	0
chr2	111702165	111703013	REMC_BreastStem.45808	0	.	111702165	111703013	0	1	848	0
chr2	111702470	111707675	REMC_LuminalBreast.90457	0	.	111702470	111707675	0	1	5205	0
chr2	111703176	111706671	MIP101.63377	0	.	111703176	111706671	0	1	3495	0
chr2	111705442	111706713	REMC_BreastStem.45809	0	.	111705442	111706713	0	1	1271	0
chr2	111709246	111713445	REMC_BreastStem.45801	0	.	111709246	111713445	0	1	4199	0
chr2	111711051	111713095	HIT000049978	0	-	111711051	111713095	0	1	2044	0
chr2	111711148	111725572	MDAMB468_Thompson.22932	0	-	111711148	111725572	0	3	1953,195,3377	0,2701,11047
chr2	111711159	111713177	BT20_Thompson.20574	0	.	111711159	111713177	0	1	2018	0
chr2	111711167	111714505	H1_polyA+.105956	0	-	111711167	111714505	0	2	1934,656	0,2682
chr2	111711176	111714045	HepG2_Caltech_ENCODE.34913	0	-	111711176	111714045	0	2	1925,196	0,2673
chr2	111711284	111712447	T47D_Burge_Thompson.27373	0	.	111711284	111712447	0	1	1163	0
chr2	111711313	111714176	melanoma_Garraway_short_term_cultures.63647	0	.	111711313	111714176	0	1	2863	0
chr2	111711531	111713205	B_Cells_Pritchard.2866215	0	.	111711531	111713205	0	1	1674	0
chr2	111711543	111712620	CD4_Plagnol_activated.60596	0	.	111711543	111712620	0	1	1077	0
chr2	111711555	111713149	MIP101.63380	0	.	111711555	111713149	0	1	1594	0
chr2	111711562	111712579	ZR751_Thompson.22456	0	.	111711562	111712579	0	1	1017	0
chr2	111711567	111713232	A549_Myers.80504	0	.	111711567	111713232	0	1	1665	0
chr2	111711571	111714035	prostate_normal.54860	0	-	111711571	111714035	0	2	1530,186	0,2278
chr2	111711770	111712616	XR_078937	0	-	111711770	111712616	0	1	846	0
chr2	111712100	111712606	HeLa_polyA+_Chen.33388	0	.	111712100	111712606	0	1	506	0
chr2	111712127	111712965	B_cells_Cheung.177888	0	.	111712127	111712965	0	1	838	0
chr2	111716380	111727082	REMC_LuminalBreast.90449	0	.	111716380	111727082	0	1	10702	0
chr2	111718815	111721956	REMC_BreastStem.45802	0	.	111718815	111721956	0	1	3141	0
chr2	111720130	111721266	B_Cells_Pritchard.2866237	0	.	111720130	111721266	0	1	1136	0
chr2	111720132	111722056	H1_polyA+.105957	0	.	111720132	111722056	0	1	1924	0
chr2	111720140	111725572	MDAMB468_Thompson.22933	0	.	111720140	111725572	0	1	5432	0
chr2	111720145	111723568	MIP101.63385	0	.	111720145	111723568	0	1	3423	0
chr2	111720145	111723568	MIP101.63384	0	-	111720145	111723568	0	2	1461,1373	0,2050
chr2	111720164	111721163	prostate_carcinoma.91166	0	.	111720164	111721163	0	1	999	0
chr2	111720195	111721780	MCF7_Burge_Thompson.29719	0	.	111720195	111721780	0	1	1585	0
chr2	111720264	111722432	prostate_normal.54861	0	.	111720264	111722432	0	1	2168	0
chr2	111720469	111721234	T47D_Burge_Thompson.27375	0	.	111720469	111721234	0	1	765	0
chr2	111720581	111721274	BT20_Thompson.20576	0	.	111720581	111721274	0	1	693	0
chr2	111722056	111725558	H1_polyA+.105958	0	.	111722056	111725558	0	1	3502	0
chr2	111723976	111726812	prostate_carcinoma.91165	0	.	111723976	111726812	0	1	2836	0
chr2	111724091	111725182	prostate_normal.54862	0	.	111724091	111725182	0	1	1091	0
chr2	111724258	111725413	HepG2_Caltech_ENCODE.34914	0	.	111724258	111725413	0	1	1155	0
chr2	111724428	111725537	MIP101.63386	0	.	111724428	111725537	0	1	1109	0
chr2	111724518	111725175	MCF7_Burge_Thompson.29720	0	.	111724518	111725175	0	1	657	0
chr2	111724519	111725568	REMC_BreastStem.45811	0	.	111724519	111725568	0	1	1049	0
chr2	111724864	111725178	liver_polyA+.120307	0	.	111724864	111725178	0	1	314	0
chr2	111745107	111745573	REMC_MyoepithelialBreast.83756	0	.	111745107	111745573	0	1	466	0
chr2	111795480	111798860	HIT000020119	0	+	111795480	111798860	0	1	3380	0
chr2	111901418	111901736	REMC_MyoepithelialBreast.83796	0	.	111901418	111901736	0	1	318	0
chr2	111904913	111905409	REMC_MyoepithelialBreast.83800	0	.	111904913	111905409	0	1	496	0
chr2	111904922	111905405	REMC_LuminalBreast.90427	0	.	111904922	111905405	0	1	483	0
chr2	111904940	111905411	REMC_BreastStem.45813	0	.	111904940	111905411	0	1	471	0
chr2	111909388	111909956	REMC_BreastStem.45816	0	.	111909388	111909956	0	1	568	0
chr2	111933413	111933737	REMC_BreastStem.45822	0	.	111933413	111933737	0	1	324	0
chr2	111934308	111935889	REMC_BreastStem.45823	0	.	111934308	111935889	0	1	1581	0
chr2	111934309	111935352	REMC_MyoepithelialBreast.83821	0	.	111934309	111935352	0	1	1043	0
chr2	111934905	111935374	REMC_LuminalBreast.90461	0	.	111934905	111935374	0	1	469	0
chr2	111939922	111940265	REMC_MyoepithelialBreast.83827	0	.	111939922	111940265	0	1	343	0
chr2	111941384	111942371	REMC_BreastStem.45828	0	.	111941384	111942371	0	1	987	0
chr2	111941399	111942393	REMC_MyoepithelialBreast.83829	0	.	111941399	111942393	0	1	994	0
chr2	111942535	111943427	REMC_MyoepithelialBreast.83830	0	.	111942535	111943427	0	1	892	0
chr2	111942872	111943378	REMC_BreastStem.45830	0	.	111942872	111943378	0	1	506	0
chr2	111943051	111943476	REMC_LuminalBreast.90472	0	.	111943051	111943476	0	1	425	0
chr2	111946603	111947634	REMC_LuminalBreast.90478	0	.	111946603	111947634	0	1	1031	0
chr2	111946872	111947638	REMC_BreastStem.45833	0	.	111946872	111947638	0	1	766	0
chr2	111948791	111949235	REMC_LuminalBreast.90480	0	.	111948791	111949235	0	1	444	0
chr2	111953965	111954660	REMC_LuminalBreast.90486	0	.	111953965	111954660	0	1	695	0
chr2	111954405	111955123	REMC_MyoepithelialBreast.83844	0	.	111954405	111955123	0	1	718	0
chr2	111955372	111956638	REMC_MyoepithelialBreast.83845	0	.	111955372	111956638	0	1	1266	0
chr2	111955402	111956198	REMC_LuminalBreast.90488	0	.	111955402	111956198	0	1	796	0
chr2	111965576	111975056	Rinn_00002978	0	+	111965576	111975056	0	2	740,1216	0,8264
chr2	111965577	111975056	HIT000017277	0	-	111965577	111975056	0	2	739,1215	0,8264
chr2	111965577	111975056	ENST00000442030	0	+	111965577	111975056	0	2	739,1215	0,8264
chr2	112011222	112011706	BT474_Burge_Thompson.32481	0	.	112011222	112011706	0	1	484	0
chr2	112092642	112093320	B_cells_Cheung.177896	0	.	112092642	112093320	0	1	678	0
chr2	112097393	112097891	B_Cells_Pritchard.2866461	0	.	112097393	112097891	0	1	498	0
chr2	112124704	112127155	H1_polyA+.105967	0	.	112124704	112127155	0	1	2451	0
chr2	112140341	112141159	H1_polyA+.105968	0	.	112140341	112141159	0	1	818	0
chr2	112164981	112166267	H1_polyA+.105972	0	.	112164981	112166267	0	1	1286	0
chr2	112174964	112176815	H1_polyA+.105976	0	.	112174964	112176815	0	1	1851	0
chr2	112175527	112177083	MIP101.63391	0	.	112175527	112177083	0	1	1556	0
chr2	112175588	112176894	MCF7_Burge_Thompson.29722	0	.	112175588	112176894	0	1	1306	0
chr2	112175714	112176688	REMC_LuminalBreast.90506	0	.	112175714	112176688	0	1	974	0
chr2	112176151	112176992	prostate_carcinoma.91172	0	.	112176151	112176992	0	1	841	0
chr2	112176549	112177085	A549_Myers.80513	0	.	112176549	112177085	0	1	536	0
chr2	112177320	112179942	H1_polyA+.105977	0	.	112177320	112179942	0	1	2622	0
chr2	112177378	112178752	MCF7_Burge_Thompson.29723	0	.	112177378	112178752	0	1	1374	0
chr2	112177971	112178504	prostate_carcinoma.91174	0	.	112177971	112178504	0	1	533	0
chr2	112183402	112184711	H1_polyA+.105978	0	.	112183402	112184711	0	1	1309	0
chr2	112370133	112371189	B_Cells_Pritchard.2867005	0	.	112370133	112371189	0	1	1056	0
chr2	112525231	112528795	B_Cells_Pritchard.2867369	0	-	112525231	112528795	0	1	3564	0
chr2	112527435	112528037	melanoma_Garraway_short_term_cultures.63671	0	.	112527435	112528037	0	1	602	0
chr2	112954594	112955167	H1_polyA+.106077	0	.	112954594	112955167	0	1	573	0
chr2	113008322	113010856	melanoma_Garraway_short_term_cultures.63709	0	.	113008322	113010856	0	1	2534	0
chr2	113008356	113011301	H1_polyA+.106096	0	.	113008356	113011301	0	1	2945	0
chr2	113008365	113009160	CD4_Plagnol_resting.58974	0	.	113008365	113009160	0	1	795	0
chr2	113009805	113010837	CD4_Plagnol_activated.60678	0	.	113009805	113010837	0	1	1032	0
chr2	113013268	113014342	H1_polyA+.106098	0	.	113013268	113014342	0	1	1074	0
chr2	113067384	113069769	REMC_LuminalBreast.90582	0	.	113067384	113069769	0	1	2385	0
chr2	113067432	113069061	HepG2_Caltech_ENCODE.34985	0	.	113067432	113069061	0	1	1629	0
chr2	113067443	113069408	H1_polyA+.106103	0	.	113067443	113069408	0	1	1965	0
chr2	113068647	113069760	B_cells_Cheung.178146	0	.	113068647	113069760	0	1	1113	0
chr2	113069180	113069763	REMC_MyoepithelialBreast.84018	0	.	113069180	113069763	0	1	583	0
chr2	113071368	113072363	B_cells_Cheung.178149	0	.	113071368	113072363	0	1	995	0
chr2	113071391	113072600	HepG2_Caltech_ENCODE.34987	0	.	113071391	113072600	0	1	1209	0
chr2	113076488	113081222	REMC_LuminalBreast.90584	0	.	113076488	113081222	0	1	4734	0
chr2	113078704	113081453	HepG2_Caltech_ENCODE.34989	0	.	113078704	113081453	0	1	2749	0
chr2	113079478	113081218	REMC_MyoepithelialBreast.84020	0	.	113079478	113081218	0	1	1740	0
chr2	113079980	113081261	B_Cells_Pritchard.2868793	0	-	113079980	113081261	0	2	990,291	0,990
chr2	113080007	113081117	prostate_normal.54929	0	.	113080007	113081117	0	1	1110	0
chr2	113080013	113080622	B_cells_Cheung.178157	0	.	113080013	113080622	0	1	609	0
chr2	113115879	113119738	HIT000044215	0	-	113115879	113119738	0	5	151,111,115,57,1592	0,247,1347,2127,2267
chr2	113115879	113119738	ENST00000457336	0	-	113115879	113119738	0	5	151,107,115,57,1592	0,251,1347,2127,2267
chr2	113115979	113119777	Rinn_00005230	0	-	113115979	113119777	0	3	51,108,301	0,150,3497
chr2	113119060	113119755	HIT000306593	0	-	113119060	113119755	0	2	403,193	0,502
chr2	113119078	113119755	Rinn_00004392	0	-	113119078	113119755	0	2	293,279	0,398
chr2	113145508	113167950	REMC_MyoepithelialBreast.84109	0	.	113145508	113167950	0	1	22442	0
chr2	113145512	113157089	REMC_LuminalBreast.90664	0	.	113145512	113157089	0	1	11577	0
chr2	113148372	113148673	CD4_Plagnol_resting.58999	0	.	113148372	113148673	0	1	301	0
chr2	113148444	113153979	REMC_BreastStem.45915	0	.	113148444	113153979	0	1	5535	0
chr2	113152826	113170085	B_Cells_Pritchard.2868943	0	-	113152826	113170085	0	2	309,52	0,17207
chr2	113155683	113157031	REMC_BreastStem.45903	0	.	113155683	113157031	0	1	1348	0
chr2	113160070	113160941	REMC_LuminalBreast.90590	0	.	113160070	113160941	0	1	871	0
chr2	113160149	113161112	REMC_BreastStem.45905	0	.	113160149	113161112	0	1	963	0
chr2	113170687	113171710	REMC_LuminalBreast.90596	0	.	113170687	113171710	0	1	1023	0
chr2	113170748	113171650	REMC_MyoepithelialBreast.84025	0	.	113170748	113171650	0	1	902	0
chr2	113178170	113179126	REMC_MyoepithelialBreast.84032	0	.	113178170	113179126	0	1	956	0
chr2	113179108	113180148	REMC_LuminalBreast.90601	0	.	113179108	113180148	0	1	1040	0
chr2	113179229	113180149	REMC_MyoepithelialBreast.84033	0	.	113179229	113180149	0	1	920	0
chr2	113184360	113185150	REMC_MyoepithelialBreast.84035	0	.	113184360	113185150	0	1	790	0
chr2	113264225	113264698	B_cells_Cheung.178332	0	.	113264225	113264698	0	1	473	0
chr2	113264918	113265925	B_cells_Cheung.178333	0	.	113264918	113265925	0	1	1007	0
chr2	113270619	113272494	B_cells_Cheung.178338	0	.	113270619	113272494	0	1	1875	0
chr2	113276802	113280520	B_cells_Cheung.178341	0	.	113276802	113280520	0	1	3718	0
chr2	113279082	113280223	B_Cells_Pritchard.2869429	0	.	113279082	113280223	0	1	1141	0
chr2	113281257	113281963	B_cells_Cheung.178342	0	.	113281257	113281963	0	1	706	0
chr2	113284664	113289148	REMC_MyoepithelialBreast.84043	0	.	113284664	113289148	0	1	4484	0
chr2	113284868	113285972	B_cells_Cheung.178344	0	.	113284868	113285972	0	2	466,540	0,564
chr2	113284894	113286569	B_Cells_Pritchard.2869459	0	-	113284894	113286569	0	1	1675	0
chr2	113284943	113285893	REMC_BreastStem.45916	0	.	113284943	113285893	0	1	950	0
chr2	113285218	113286569	B_Cells_Pritchard.2869457	0	+	113285218	113286569	0	1	1351	0
chr2	113293815	113294885	REMC_MyoepithelialBreast.84047	0	.	113293815	113294885	0	1	1070	0
chr2	113295011	113296912	REMC_MyoepithelialBreast.84048	0	.	113295011	113296912	0	1	1901	0
chr2	113295816	113296437	H1_polyA+.106134	0	.	113295816	113296437	0	1	621	0
chr2	113296095	113297412	melanoma_Garraway_short_term_cultures.63748	0	.	113296095	113297412	0	1	1317	0
chr2	113296310	113296837	B_cells_Cheung.178234	0	.	113296310	113296837	0	1	527	0
chr2	113320858	113321176	B_cells_Cheung.178249	0	.	113320858	113321176	0	1	318	0
chr2	113325940	113326310	B_cells_Cheung.178253	0	.	113325940	113326310	0	1	370	0
chr2	113337595	113337919	B_cells_Cheung.178262	0	.	113337595	113337919	0	1	324	0
chr2	113341902	113343618	B_cells_Cheung.178265	0	.	113341902	113343618	0	1	1716	0
chr2	113342669	113343531	H1_polyA+.106152	0	.	113342669	113343531	0	1	862	0
chr2	113357642	113358188	B_Cells_Pritchard.2869851	0	.	113357642	113358188	0	1	546	0
chr2	113367880	113368464	B_Cells_Pritchard.2869899	0	.	113367880	113368464	0	1	584	0
chr2	113378792	113380616	H1_polyA+.106161	0	.	113378792	113380616	0	1	1824	0
chr2	113379640	113380184	B_cells_Cheung.178277	0	.	113379640	113380184	0	1	544	0
chr2	113385149	113385539	B_Cells_Pritchard.2869971	0	.	113385149	113385539	0	1	390	0
chr2	113405809	113406206	B_Cells_Pritchard.2870059	0	.	113405809	113406206	0	1	397	0
chr2	113415603	113421847	HIT000057145	0	-	113415603	113421847	0	1	6244	0
chr2	113677866	113683256	MCF7_Burge_Thompson.29789	0	-	113677866	113683256	0	2	608,1097	0,4293
chr2	113677875	113679041	B_Cells_Pritchard.2878897	0	-	113677875	113679041	0	1	1166	0
chr2	113679872	113681326	HeLa_polyA+_Chen.33440	0	.	113679872	113681326	0	1	1454	0
chr2	113679884	113681529	MCF7_Burge_Thompson.29791	0	.	113679884	113681529	0	1	1645	0
chr2	113679973	113683444	HIT000043490	0	+	113679973	113683444	0	1	3471	0
chr2	113681724	113688555	B_Cells_Pritchard.2870755	0	+	113681724	113688555	0	2	426,2533	0,4298
chr2	113681749	113684163	REMC_MyoepithelialBreast.84061	0	.	113681749	113684163	0	1	2414	0
chr2	113681769	113683694	B_cells_Cheung.180183	0	.	113681769	113683694	0	1	1925	0
chr2	113684052	113685434	B_cells_Cheung.180184	0	.	113684052	113685434	0	1	1382	0
chr2	113684582	113685352	melanoma_Garraway_short_term_cultures.63758	0	.	113684582	113685352	0	1	770	0
chr2	113686715	113687353	A549_Myers.80663	0	.	113686715	113687353	0	1	638	0
chr2	113686955	113687362	B_cells_Cheung.180186	0	.	113686955	113687362	0	1	407	0
chr2	113687066	113687978	HepG2_Caltech_ENCODE.35019	0	.	113687066	113687978	0	1	912	0
chr2	113687155	113687471	kidney_Raymond.89636	0	.	113687155	113687471	0	1	316	0
chr2	113687220	113687918	REMC_MyoepithelialBreast.84063	0	.	113687220	113687918	0	1	698	0
chr2	113756995	113757307	A549_Myers.80694	0	.	113756995	113757307	0	1	312	0
chr2	113878635	113879655	B_Cells_Pritchard.2870959	0	.	113878635	113879655	0	1	1020	0
chr2	113987388	113989341	HIT000251988	0	-	113987388	113989341	0	3	207,69,311	0,405,1642
chr2	114049084	114049615	K562.42087	0	.	114049084	114049615	0	1	531	0
chr2	114075731	114076724	K562.42105	0	.	114075731	114076724	0	1	993	0
chr2	114076193	114076941	B_cells_Cheung.178392	0	.	114076193	114076941	0	1	748	0
chr2	114077137	114077766	B_cells_Cheung.178393	0	.	114077137	114077766	0	1	629	0
chr2	114079913	114081961	HIT000324546	0	+	114079913	114081961	0	1	2048	0
chr2	114080333	114080634	REMC_MyoepithelialBreast.84095	0	.	114080333	114080634	0	1	301	0
chr2	114143211	114147238	Rinn_00002985	0	+	114143211	114147238	0	4	37,90,160,324	0,2672,3414,3703
chr2	114170705	114175140	REMC_LuminalBreast.90739	0	.	114170705	114175140	0	1	4435	0
chr2	114171653	114173835	REMC_MyoepithelialBreast.84124	0	.	114171653	114173835	0	1	2182	0
chr2	114172781	114173681	MIP101.63566	0	.	114172781	114173681	0	1	900	0
chr2	114174363	114174938	B_cells_Cheung.178433	0	.	114174363	114174938	0	1	575	0
chr2	114178121	114178607	REMC_BreastStem.45940	0	.	114178121	114178607	0	1	486	0
chr2	114292536	114298162	B_Cells_Pritchard.2871657	0	-	114292536	114298162	0	2	456,2250	0,3376
chr2	114293185	114294054	REMC_BreastStem.45932	0	.	114293185	114294054	0	1	869	0
chr2	114293282	114304510	prostate_carcinoma.91424	0	+	114293282	114304510	0	2	9,1434	0,9794
chr2	114295874	114297047	B_cells_Cheung.178475	0	.	114295874	114297047	0	1	1173	0
chr2	114296278	114297840	HepG2_Caltech_ENCODE.35066	0	.	114296278	114297840	0	1	1562	0
chr2	114303062	114304558	B_cells_Cheung.178483	0	.	114303062	114304558	0	1	1496	0
chr2	114309029	114310731	B_cells_Cheung.179876	0	.	114309029	114310731	0	1	1702	0
chr2	114311015	114315894	B_cells_Cheung.179877	0	.	114311015	114315894	0	1	4879	0
chr2	114313923	114315243	REMC_MyoepithelialBreast.84311	0	.	114313923	114315243	0	1	1320	0
chr2	114313995	114315222	REMC_LuminalBreast.90704	0	.	114313995	114315222	0	1	1227	0
chr2	114316659	114317791	REMC_MyoepithelialBreast.84312	0	.	114316659	114317791	0	1	1132	0
chr2	114325344	114327877	REMC_LuminalBreast.90708	0	.	114325344	114327877	0	1	2533	0
chr2	114326211	114327754	B_cells_Cheung.179885	0	.	114326211	114327754	0	1	1543	0
chr2	114328120	114338327	REMC_LuminalBreast.90854	0	.	114328120	114338327	0	1	10207	0
chr2	114357838	114358442	H1_polyA+.106501	0	.	114357838	114358442	0	1	604	0
chr2	114439122	114444459	HepG2_Caltech_ENCODE.35077	0	.	114439122	114444459	0	1	5337	0
chr2	114441825	114444131	B_cells_Cheung.178504	0	.	114441825	114444131	0	1	2306	0
chr2	114443027	114444042	prostate_carcinoma.91459	0	.	114443027	114444042	0	1	1015	0
chr2	114443065	114443665	melanoma_Garraway_short_term_cultures.63808	0	.	114443065	114443665	0	1	600	0
chr2	114443523	114446397	Rinn_00004414	0	-	114443523	114446397	0	2	1224,136	0,2738
chr2	114445512	114449440	B_cells_Cheung.178506	0	.	114445512	114449440	0	1	3928	0
chr2	114451018	114452026	B_cells_Cheung.178510	0	.	114451018	114452026	0	1	1008	0
chr2	114451536	114453826	testes_Burge.49685	0	.	114451536	114453826	0	1	2290	0
chr2	114452958	114453685	B_Cells_Pritchard.2871929	0	.	114452958	114453685	0	1	727	0
chr2	114453759	114454083	pHIT000004837	0	-	114453759	114454083	0	1	324	0
chr2	114453899	114454295	testes_Burge.49684	0	.	114453899	114454295	0	1	396	0
chr2	114454000	114454696	B_Cells_Pritchard.2871931	0	.	114454000	114454696	0	1	696	0
chr2	114454002	114454559	B_cells_Cheung.178513	0	.	114454002	114454559	0	1	557	0
chr2	114457263	114458300	REMC_BreastStem.45951	0	.	114457263	114458300	0	1	1037	0
chr2	114457893	114458320	B_cells_Cheung.178517	0	.	114457893	114458320	0	1	427	0
chr2	114461720	114463437	REMC_BreastStem.45953	0	.	114461720	114463437	0	1	1717	0
chr2	114464753	114466900	B_cells_Cheung.178522	0	.	114464753	114466900	0	1	2147	0
chr2	114465000	114466571	B_Cells_Pritchard.2871975	0	.	114465000	114466571	0	1	1571	0
chr2	114465221	114467878	REMC_BreastStem.45955	0	.	114465221	114467878	0	1	2657	0
chr2	114470718	114471255	B_cells_Cheung.178526	0	.	114470718	114471255	0	1	537	0
chr2	114470790	114471206	B_Cells_Pritchard.2872001	0	.	114470790	114471206	0	1	416	0
chr2	114474908	114475509	B_cells_Cheung.178528	0	.	114474908	114475509	0	1	601	0
chr2	114475593	114476537	B_cells_Cheung.178529	0	.	114475593	114476537	0	1	944	0
chr2	114475744	114476792	prostate_carcinoma.91461	0	.	114475744	114476792	0	1	1048	0
chr2	114475769	114476389	HepG2_Caltech_ENCODE.35081	0	.	114475769	114476389	0	1	620	0
chr2	114475865	114476528	B_Cells_Pritchard.2872021	0	-	114475865	114476528	0	1	663	0
chr2	114475902	114476489	melanoma_Garraway_short_term_cultures.63809	0	.	114475902	114476489	0	1	587	0
chr2	114504767	114505797	REMC_LuminalBreast.90724	0	.	114504767	114505797	0	1	1030	0
chr2	114505511	114551488	pHIT000100063	0	-	114505511	114551488	0	3	202,113,87	0,36687,45890
chr2	114515335	114516952	REMC_LuminalBreast.90728	0	.	114515335	114516952	0	1	1617	0
chr2	114539908	114541837	REMC_LuminalBreast.90740	0	.	114539908	114541837	0	1	1929	0
chr2	116678191	116678594	B_Cells_Pritchard.2875899	0	.	116678191	116678594	0	1	403	0
chr2	116887489	116888270	BT474_Burge_Thompson.32550	0	.	116887489	116888270	0	1	781	0
chr2	116887584	116888174	B_Cells_Pritchard.2876253	0	.	116887584	116888174	0	1	590	0
chr2	117532588	117533422	H1_polyA+.106358	0	.	117532588	117533422	0	1	834	0
chr2	117535575	117537370	H1_polyA+.106359	0	.	117535575	117537370	0	1	1795	0
chr2	117539285	117541791	H1_polyA+.106361	0	.	117539285	117541791	0	1	2506	0
chr2	117556951	117557927	H1_polyA+.106364	0	.	117556951	117557927	0	1	976	0
chr2	117607562	117608174	melanoma_Garraway_short_term_cultures.63821	0	.	117607562	117608174	0	1	612	0
chr2	117693293	117696248	H1_polyA+.106374	0	.	117693293	117696248	0	1	2955	0
chr2	117701873	117707360	H1_polyA+.106376	0	.	117701873	117707360	0	1	5487	0
chr2	117753536	117754137	H9_polyA+.42079	0	.	117753536	117754137	0	1	601	0
chr2	117753536	117754183	H1_polyA+.106381	0	.	117753536	117754183	0	1	647	0
chr2	117753536	117765140	H1_polyA+.106382	0	+	117753536	117765140	0	2	529,828	0,10776
chr2	117759710	117760423	H9_polyA+.42080	0	.	117759710	117760423	0	1	713	0
chr2	117762899	117764944	H9_polyA+.42089	0	.	117762899	117764944	0	1	2045	0
chr2	117792152	117793236	H1_polyA+.106399	0	.	117792152	117793236	0	1	1084	0
chr2	117813100	117814175	H1_polyA+.106406	0	.	117813100	117814175	0	1	1075	0
chr2	117816784	117818241	H1_polyA+.106408	0	.	117816784	117818241	0	1	1457	0
chr2	117838547	117839767	H1_polyA+.106419	0	.	117838547	117839767	0	1	1220	0
chr2	117844210	117848518	H1_polyA+.106421	0	.	117844210	117848518	0	1	4308	0
chr2	117849749	117876230	H1_polyA+.106423	0	.	117849749	117876230	0	1	26481	0
chr2	117876570	117879958	H1_polyA+.106424	0	.	117876570	117879958	0	1	3388	0
chr2	117880092	117885709	H1_polyA+.106425	0	.	117880092	117885709	0	1	5617	0
chr2	117887966	117891114	H1_polyA+.106427	0	.	117887966	117891114	0	1	3148	0
chr2	117920135	117921096	H1_polyA+.106440	0	.	117920135	117921096	0	1	961	0
chr2	117927740	117933157	H1_polyA+.106445	0	.	117927740	117933157	0	1	5417	0
chr2	117936240	117937943	H1_polyA+.106446	0	.	117936240	117937943	0	1	1703	0
chr2	117938545	117941857	H1_polyA+.106448	0	.	117938545	117941857	0	1	3312	0
chr2	117942080	117947976	H1_polyA+.106449	0	.	117942080	117947976	0	1	5896	0
chr2	117950875	117951732	H1_polyA+.106452	0	.	117950875	117951732	0	1	857	0
chr2	117962246	117968460	H1_polyA+.106456	0	.	117962246	117968460	0	1	6214	0
chr2	117970187	117971515	H1_polyA+.106458	0	.	117970187	117971515	0	1	1328	0
chr2	117974820	117982693	H1_polyA+.106457	0	.	117974820	117982693	0	1	7873	0
chr2	118007212	118011790	H1_polyA+.106466	0	.	118007212	118011790	0	1	4578	0
chr2	118014825	118017691	H1_polyA+.106469	0	.	118014825	118017691	0	1	2866	0
chr2	118034365	118039604	H1_polyA+.106473	0	.	118034365	118039604	0	1	5239	0
chr2	118043571	118049145	H1_polyA+.106475	0	.	118043571	118049145	0	1	5574	0
chr2	118045394	118046085	H9_polyA-_Chen.13397	0	.	118045394	118046085	0	1	691	0
chr2	118062046	118067497	H1_polyA+.106483	0	.	118062046	118067497	0	1	5451	0
chr2	118069304	118073889	H1_polyA+.106484	0	.	118069304	118073889	0	1	4585	0
chr2	118075513	118083997	H1_polyA+.106485	0	.	118075513	118083997	0	1	8484	0
chr2	118085159	118096793	H1_polyA+.106488	0	.	118085159	118096793	0	1	11634	0
chr2	118234332	118234640	H1_polyA+.106491	0	.	118234332	118234640	0	1	308	0
chr2	118307859	118308538	CD4_Plagnol_activated.60761	0	.	118307859	118308538	0	1	679	0
chr2	118308183	118308558	liver_polyA+.120596	0	.	118308183	118308558	0	1	375	0
chr2	118308947	118316358	B_Cells_Pritchard.2878951	0	-	118308947	118316358	0	1	7411	0
chr2	118308947	118320229	B_Cells_Pritchard.2878949	0	+	118308947	118320229	0	5	1527,246,2492,950,1251	0,1753,2756,6350,10031
chr2	118308949	118313097	B_cells_Cheung.178553	0	.	118308949	118313097	0	1	4148	0
chr2	118308949	118310456	melanoma_Garraway_short_term_cultures.63832	0	.	118308949	118310456	0	1	1507	0
chr2	118308955	118309381	CD4_Plagnol_activated.60762	0	.	118308955	118309381	0	1	426	0
chr2	118308965	118310484	CD4_Plagnol_resting.59094	0	.	118308965	118310484	0	1	1519	0
chr2	118308966	118310440	liver_polyA+.120597	0	.	118308966	118310440	0	1	1474	0
chr2	118308983	118309700	ZR751_Thompson.22515	0	.	118308983	118309700	0	1	717	0
chr2	118309041	118310472	prostate_normal.55041	0	.	118309041	118310472	0	1	1431	0
chr2	118309433	118310739	T47D_Burge_Thompson.27458	0	.	118309433	118310739	0	1	1306	0
chr2	118309461	118310369	BT20_Thompson.20639	0	.	118309461	118310369	0	1	908	0
chr2	118309470	118313065	CD4_Plagnol_activated.60764	0	.	118309470	118313065	0	1	3595	0
chr2	118309488	118309801	H1_rRNA-depleted_UCSD_REMC.80007	0	.	118309488	118309801	0	1	313	0
chr2	118309497	118310258	MeWo_Garraway.34170	0	.	118309497	118310258	0	1	761	0
chr2	118309499	118310886	pHIT000100069	0	+	118309499	118310886	0	3	163,140,153	0,931,1234
chr2	118309499	118328818	pHIT000004841	0	+	118309499	118328818	0	4	163,140,120,198	0,931,1234,19121
chr2	118310004	118310534	brain_AmbionMAQC.41935	0	.	118310004	118310534	0	1	530	0
chr2	118310394	118312250	Rinn_00002986	0	+	118310394	118312250	0	3	176,247,548	0,305,1308
chr2	118310395	118312250	ENST00000439955	0	+	118310395	118312250	0	3	175,246,547	0,305,1308
chr2	118310545	118313064	prostate_carcinoma.91471	0	.	118310545	118313064	0	1	2519	0
chr2	118310545	118316046	CD4_Plagnol_resting.59095	0	.	118310545	118316046	0	1	5501	0
chr2	118312864	118314235	ZR751_Thompson.22517	0	.	118312864	118314235	0	1	1371	0
chr2	118313159	118316399	B_cells_Cheung.178555	0	.	118313159	118316399	0	1	3240	0
chr2	118313171	118315042	CD4_Plagnol_activated.60765	0	.	118313171	118315042	0	1	1871	0
chr2	118313176	118316739	melanoma_Garraway_short_term_cultures.63834	0	.	118313176	118316739	0	1	3563	0
chr2	118313335	118314427	liver_polyA+.120602	0	.	118313335	118314427	0	1	1092	0
chr2	118313356	118314209	A549_Myers.80750	0	.	118313356	118314209	0	1	853	0
chr2	118315732	118316117	ZR751_Thompson.22519	0	.	118315732	118316117	0	1	385	0
chr2	118318105	118320081	REMC_LuminalBreast.90757	0	.	118318105	118320081	0	1	1976	0
chr2	118318386	118320029	REMC_BreastStem.45970	0	.	118318386	118320029	0	1	1643	0
chr2	118318629	118320080	melanoma_Garraway_short_term_cultures.63835	0	.	118318629	118320080	0	1	1451	0
chr2	118488219	118489736	HIT000027080	0	+	118488219	118489736	0	1	1517	0
chr2	118543801	118544965	prostate_carcinoma.91477	0	.	118543801	118544965	0	1	1164	0
chr2	118585429	118586119	liver_polyA+.120627	0	.	118585429	118586119	0	1	690	0
chr2	118588148	118592305	B_Cells_Pritchard.2879579	0	.	118588148	118592305	0	1	4157	0
chr2	118588671	118589710	B_cells_Cheung.178595	0	.	118588671	118589710	0	1	1039	0
chr2	118589649	118596792	HepG2_Caltech_ENCODE.35104	0	.	118589649	118596792	0	1	7143	0
chr2	118589804	118592193	B_cells_Cheung.178596	0	.	118589804	118592193	0	1	2389	0
chr2	118591016	118592693	REMC_MyoepithelialBreast.84149	0	.	118591016	118592693	0	1	1677	0
chr2	118602814	118605335	prostate_carcinoma.91487	0	.	118602814	118605335	0	1	2521	0
chr2	118602887	118604889	prostate_normal.55048	0	.	118602887	118604889	0	1	2002	0
chr2	118658833	118660694	MIP101.63619	0	.	118658833	118660694	0	1	1861	0
chr2	118659816	118660750	prostate_carcinoma.91491	0	.	118659816	118660750	0	1	934	0
chr2	118659832	118660407	BT474_Burge_Thompson.32571	0	.	118659832	118660407	0	1	575	0
chr2	118660117	118660454	H1_rRNA-depleted_UCSD_REMC.80048	0	.	118660117	118660454	0	1	337	0
chr2	118660287	118660752	A549_Myers.80787	0	.	118660287	118660752	0	1	465	0
chr2	118697463	118700295	B_Cells_Pritchard.2879967	0	.	118697463	118700295	0	1	2832	0
chr2	118698583	118699517	B_cells_Cheung.178603	0	.	118698583	118699517	0	1	934	0
chr2	118699588	118700374	B_cells_Cheung.178604	0	.	118699588	118700374	0	1	786	0
chr2	118934016	118964447	H1_polyA+.106586	0	-	118934016	118964447	0	2	161,303	0,30128
chr2	119154270	119154799	A549_Myers.80789	0	.	119154270	119154799	0	1	529	0
chr2	119235773	119236505	MDAMB468_Thompson.23003	0	.	119235773	119236505	0	1	732	0
chr2	119236557	119238779	MDAMB468_Thompson.23004	0	.	119236557	119238779	0	1	2222	0
chr2	119307797	119309103	MB435_Burge.40542	0	-	119307797	119309103	0	3	652,175,63	0,736,1243
chr2	119309064	119310079	BT474_Burge_Thompson.32577	0	.	119309064	119310079	0	1	1015	0
chr2	119309464	119310201	MeWo_Garraway.34195	0	.	119309464	119310201	0	1	737	0
chr2	119309536	119309903	MB435_Burge.40543	0	.	119309536	119309903	0	1	367	0
chr2	119327522	119349378	pHIT000004850	0	-	119327522	119349378	0	5	41,232,240,100,86	0,251,3649,5991,21770
chr2	119329480	119330094	A549_Myers.80794	0	.	119329480	119330094	0	1	614	0
chr2	119352491	119353899	REMC_LuminalBreast.90762	0	.	119352491	119353899	0	1	1408	0
chr2	119354014	119358203	REMC_LuminalBreast.90763	0	.	119354014	119358203	0	1	4189	0
chr2	119394955	119396361	REMC_LuminalBreast.90765	0	.	119394955	119396361	0	1	1406	0
chr2	119396649	119398174	REMC_LuminalBreast.90766	0	.	119396649	119398174	0	1	1525	0
chr2	119499727	119500465	A549_Myers.80795	0	.	119499727	119500465	0	1	738	0
chr2	119611669	119612018	A549_Myers.80796	0	.	119611669	119612018	0	1	349	0
chr2	119638630	119642291	H1_polyA+.106603	0	.	119638630	119642291	0	1	3661	0
chr2	119642416	119643936	H1_polyA+.106604	0	.	119642416	119643936	0	1	1520	0
chr2	119644750	119646200	H1_polyA+.106605	0	.	119644750	119646200	0	1	1450	0
chr2	119648225	119648659	B_Cells_Pritchard.2882381	0	.	119648225	119648659	0	1	434	0
chr2	119648365	119648854	A549_Myers.80799	0	.	119648365	119648854	0	1	489	0
chr2	119669974	119670378	liver_polyA+.120648	0	.	119669974	119670378	0	1	404	0
chr2	119848522	119852219	REMC_LuminalBreast.90794	0	.	119848522	119852219	0	1	3697	0
chr2	119894630	119896022	HepG2_Caltech_ENCODE.35124	0	.	119894630	119896022	0	1	1392	0
chr2	119900942	119901271	A549_Myers.80831	0	.	119900942	119901271	0	1	329	0
chr2	120161922	120163133	REMC_LuminalBreast.90805	0	.	120161922	120163133	0	1	1211	0
chr2	120162216	120163459	MCF7_Burge_Thompson.29825	0	.	120162216	120163459	0	1	1243	0
chr2	120162244	120162905	BT474_Burge_Thompson.32583	0	.	120162244	120162905	0	1	661	0
chr2	120162304	120163537	brain_AmbionMAQC.41988	0	.	120162304	120163537	0	1	1233	0
chr2	120162368	120163608	CD4_Plagnol_resting.59154	0	.	120162368	120163608	0	1	1240	0
chr2	120162452	120163206	MeWo_Garraway.34200	0	.	120162452	120163206	0	1	754	0
chr2	120162581	120163876	liver_polyA+.120693	0	.	120162581	120163876	0	1	1295	0
chr2	120162674	120163194	T47D_Burge_Thompson.27471	0	.	120162674	120163194	0	1	520	0
chr2	120162875	120163827	HeLa_polyA+_Chen.33510	0	.	120162875	120163827	0	1	952	0
chr2	120162981	120163526	kidney_Gilad.78051	0	.	120162981	120163526	0	1	545	0
chr2	120164502	120166218	prostate_carcinoma.91530	0	.	120164502	120166218	0	1	1716	0
chr2	120164767	120166193	HepG2_Caltech_ENCODE.35129	0	.	120164767	120166193	0	1	1426	0
chr2	120165495	120166752	B_cells_Cheung.178645	0	.	120165495	120166752	0	1	1257	0
chr2	120165677	120166699	A549_Myers.80854	0	.	120165677	120166699	0	1	1022	0
chr2	120166965	120168565	HepG2_Caltech_ENCODE.35130	0	.	120166965	120168565	0	1	1600	0
chr2	120166983	120169109	H1_polyA+.106643	0	.	120166983	120169109	0	1	2126	0
chr2	120167034	120169782	B_Cells_Pritchard.2883705	0	.	120167034	120169782	0	1	2748	0
chr2	120167051	120169510	prostate_carcinoma.91531	0	.	120167051	120169510	0	1	2459	0
chr2	120167216	120168396	melanoma_Garraway_short_term_cultures.63869	0	.	120167216	120168396	0	1	1180	0
chr2	120167490	120168461	prostate_normal.55091	0	.	120167490	120168461	0	1	971	0
chr2	120167494	120168299	HeLa_polyA+_Chen.33512	0	.	120167494	120168299	0	1	805	0
chr2	120167821	120168381	BT474_Burge_Thompson.32584	0	.	120167821	120168381	0	1	560	0
chr2	120167993	120168342	A549_Myers.80855	0	.	120167993	120168342	0	1	349	0
chr2	120168160	120168973	B_cells_Cheung.178647	0	.	120168160	120168973	0	1	813	0
chr2	120169882	120170858	B_Cells_Pritchard.2883707	0	.	120169882	120170858	0	1	976	0
chr2	120174787	120178217	B_cells_Cheung.178650	0	+	120174787	120178217	0	3	353,437,79	0,2830,3351
chr2	120174881	120175329	prostate_carcinoma.91536	0	.	120174881	120175329	0	1	448	0
chr2	120174982	120175482	B_Cells_Pritchard.2883725	0	.	120174982	120175482	0	1	500	0
chr2	120177167	120178374	H1_polyA+.106645	0	.	120177167	120178374	0	1	1207	0
chr2	120177652	120178125	A549_Myers.80846	0	.	120177652	120178125	0	1	473	0
chr2	120177654	120178267	prostate_carcinoma.91538	0	.	120177654	120178267	0	1	613	0
chr2	120177662	120178381	B_Cells_Pritchard.2883735	0	.	120177662	120178381	0	1	719	0
chr2	120177676	120178005	H9_polyA+.42147	0	.	120177676	120178005	0	1	329	0
chr2	120177686	120178183	prostate_normal.55083	0	.	120177686	120178183	0	1	497	0
chr2	120181074	120182359	HepG2_Caltech_ENCODE.35133	0	.	120181074	120182359	0	1	1285	0
chr2	120181689	120182218	B_Cells_Pritchard.2883751	0	.	120181689	120182218	0	1	529	0
chr2	120185877	120187080	prostate_carcinoma.91539	0	.	120185877	120187080	0	1	1203	0
chr2	120189382	120190962	H1_polyA+.106648	0	.	120189382	120190962	0	1	1580	0
chr2	120189685	120191303	prostate_carcinoma.91540	0	.	120189685	120191303	0	1	1618	0
chr2	120189856	120190617	prostate_normal.55092	0	.	120189856	120190617	0	1	761	0
chr2	120189857	120190365	B_Cells_Pritchard.2883783	0	.	120189857	120190365	0	1	508	0
chr2	120203000	120205577	HepG2_Caltech_ENCODE.35138	0	.	120203000	120205577	0	1	2577	0
chr2	120203794	120205424	prostate_normal.55094	0	.	120203794	120205424	0	1	1630	0
chr2	120204108	120205442	prostate_carcinoma.91545	0	.	120204108	120205442	0	1	1334	0
chr2	120205700	120207592	HepG2_Caltech_ENCODE.35139	0	.	120205700	120207592	0	1	1892	0
chr2	120206171	120207049	prostate_normal.55095	0	.	120206171	120207049	0	1	878	0
chr2	120225824	120226446	HepG2_Caltech_ENCODE.35140	0	.	120225824	120226446	0	1	622	0
chr2	120459025	120460203	B_Cells_Pritchard.2884417	0	.	120459025	120460203	0	1	1178	0
chr2	120459225	120460974	REMC_MyoepithelialBreast.84192	0	.	120459225	120460974	0	1	1749	0
chr2	120459254	120460308	B_cells_Cheung.178731	0	.	120459254	120460308	0	1	1054	0
chr2	120459376	120460061	CD4_Plagnol_resting.59187	0	.	120459376	120460061	0	1	685	0
chr2	120459377	120459973	CD4_Snyder.67197	0	.	120459377	120459973	0	1	596	0
chr2	120459379	120460013	CD4_Plagnol_activated.60810	0	.	120459379	120460013	0	1	634	0
chr2	120459381	120460592	MIP101.63671	0	.	120459381	120460592	0	1	1211	0
chr2	120459398	120460922	brain_AmbionMAQC.41995	0	.	120459398	120460922	0	1	1524	0
chr2	120459486	120460903	REMC_LuminalBreast.90832	0	.	120459486	120460903	0	1	1417	0
chr2	120459734	120460899	HepG2_Caltech_ENCODE.35149	0	.	120459734	120460899	0	1	1165	0
chr2	120655615	120656878	REMC_BreastStem.46024	0	.	120655615	120656878	0	1	1263	0
chr2	120655823	120658066	B_cells_Cheung.178797	0	.	120655823	120658066	0	1	2243	0
chr2	120656625	120658382	H1_polyA+.106695	0	.	120656625	120658382	0	1	1757	0
chr2	120656993	120658357	REMC_BreastStem.46025	0	.	120656993	120658357	0	1	1364	0
chr2	120657625	120658381	B_Cells_Pritchard.2885001	0	.	120657625	120658381	0	1	756	0
chr2	120677117	120681184	MIP101.63696	0	.	120677117	120681184	0	1	4067	0
chr2	120677214	120678509	REMC_BreastStem.46034	0	.	120677214	120678509	0	1	1295	0
chr2	120677481	120679095	B_Cells_Pritchard.2885053	0	+	120677481	120679095	0	1	1614	0
chr2	120678054	120678621	A549_Myers.80887	0	.	120678054	120678621	0	1	567	0
chr2	120678397	120680585	pHIT000073491	0	+	120678397	120680585	0	2	174,238	0,1950
chr2	120678397	120680743	pHIT000004864	0	+	120678397	120680743	0	2	174,396	0,1950
chr2	120679328	120681236	B_Cells_Pritchard.2885063	0	.	120679328	120681236	0	1	1908	0
chr2	120679431	120681017	REMC_BreastStem.46035	0	.	120679431	120681017	0	1	1586	0
chr2	120679712	120681263	H1_polyA+.106701	0	.	120679712	120681263	0	1	1551	0
chr2	120680349	120681170	prostate_carcinoma.91642	0	.	120680349	120681170	0	1	821	0
chr2	120680442	120680994	B_cells_Cheung.178803	0	.	120680442	120680994	0	1	552	0
chr2	120682007	120683530	B_cells_Cheung.178806	0	.	120682007	120683530	0	1	1523	0
chr2	120682487	120684928	B_Cells_Pritchard.2885067	0	.	120682487	120684928	0	1	2441	0
chr2	120691507	120692777	HIT000262946	0	-	120691507	120692777	0	1	1270	0
chr2	120691516	120693560	HIT000015847	0	-	120691516	120693560	0	1	2044	0
chr2	120691524	120694531	melanoma_Garraway_short_term_cultures.63903	0	.	120691524	120694531	0	1	3007	0
chr2	120691531	120694530	CD4_Plagnol_resting.59201	0	.	120691531	120694530	0	1	2999	0
chr2	120691533	120692284	lymph_node_Burge.47065	0	.	120691533	120692284	0	1	751	0
chr2	120691538	120694574	prostate_normal.55137	0	.	120691538	120694574	0	1	3036	0
chr2	120691546	120694532	MCF10A_Thompson.20020	0	.	120691546	120694532	0	1	2986	0
chr2	120691551	120694513	brain_AmbionMAQC.42006	0	.	120691551	120694513	0	1	2962	0
chr2	120691552	120692553	MeI_Garraway.16434	0	.	120691552	120692553	0	1	1001	0
chr2	120691564	120694543	BT474_Burge_Thompson.32599	0	+	120691564	120694543	0	2	1845,471	0,2508
chr2	120691564	120694543	BT474_Burge_Thompson.32598	0	.	120691564	120694543	0	1	2979	0
chr2	120691564	120694519	BT20_Thompson.20675	0	.	120691564	120694519	0	1	2955	0
chr2	120691569	120694524	A549_Myers.80955	0	.	120691569	120694524	0	1	2955	0
chr2	120691574	120692227	skeletal_muscle_Burge.27356	0	.	120691574	120692227	0	1	653	0
chr2	120691578	120693997	MeWo_Garraway.34224	0	.	120691578	120693997	0	1	2419	0
chr2	120691612	120692894	T47D_Burge_Thompson.27495	0	.	120691612	120692894	0	1	1282	0
chr2	120691626	120692279	colon_Burge.35509	0	.	120691626	120692279	0	1	653	0
chr2	120691636	120694509	MDAMB231_Thompson.20637	0	.	120691636	120694509	0	1	2873	0
chr2	120691651	120692683	adipose_Burge.36328	0	.	120691651	120692683	0	1	1032	0
chr2	120691833	120692171	liver_polyA+.120830	0	.	120691833	120692171	0	1	338	0
chr2	120691833	120692563	NEC_from_H9.69727	0	.	120691833	120692563	0	1	730	0
chr2	120691865	120692886	testes_Burge.49766	0	.	120691865	120692886	0	1	1021	0
chr2	120691870	120692555	HeLa_Bartel_WT_12hr.30011	0	.	120691870	120692555	0	1	685	0
chr2	120691939	120692830	breast_Burge.38114	0	.	120691939	120692830	0	1	891	0
chr2	120692048	120692886	HME_Burge.38376	0	.	120692048	120692886	0	1	838	0
chr2	120692230	120692691	heart_Burge.26779	0	.	120692230	120692691	0	1	461	0
chr2	120702528	120705468	CD4_Plagnol_activated.60834	0	.	120702528	120705468	0	1	2940	0
chr2	120703519	120704041	CD4_Plagnol_resting.59202	0	.	120703519	120704041	0	1	522	0
chr2	120704625	120706528	prostate_carcinoma.91644	0	.	120704625	120706528	0	1	1903	0
chr2	120704660	120705489	MIP101.63699	0	.	120704660	120705489	0	1	829	0
chr2	120709718	120710198	prostate_carcinoma.91600	0	.	120709718	120710198	0	1	480	0
chr2	120709807	120710200	prostate_normal.55122	0	.	120709807	120710200	0	1	393	0
chr2	120710413	120711445	prostate_carcinoma.91601	0	.	120710413	120711445	0	1	1032	0
chr2	120770962	120775015	REMC_LuminalBreast.91315	0	.	120770962	120775015	0	1	4053	0
chr2	120771000	120773462	B_Cells_Pritchard.2885409	0	.	120771000	120773462	0	1	2462	0
chr2	120771000	120773344	B_cells_Cheung.178823	0	.	120771000	120773344	0	1	2344	0
chr2	120771017	120773885	prostate_carcinoma.91617	0	.	120771017	120773885	0	1	2868	0
chr2	120771043	120773873	MIP101.63713	0	.	120771043	120773873	0	1	2830	0
chr2	120775167	120777142	REMC_LuminalBreast.91316	0	.	120775167	120777142	0	1	1975	0
chr2	120775249	120777131	B_cells_Cheung.178825	0	.	120775249	120777131	0	1	1882	0
chr2	120776705	120777494	REMC_BreastStem.46044	0	.	120776705	120777494	0	1	789	0
chr2	120780078	120780559	B_Cells_Pritchard.2885419	0	.	120780078	120780559	0	1	481	0
chr2	120781550	120782027	B_cells_Cheung.178827	0	.	120781550	120782027	0	1	477	0
chr2	120781577	120782342	B_Cells_Pritchard.2885425	0	.	120781577	120782342	0	1	765	0
chr2	120786718	120791315	B_Cells_Pritchard.2885445	0	.	120786718	120791315	0	1	4597	0
chr2	120786931	120787506	A549_Myers.80904	0	.	120786931	120787506	0	1	575	0
chr2	120788249	120789073	prostate_carcinoma.91620	0	.	120788249	120789073	0	1	824	0
chr2	120789593	120789959	B_cells_Cheung.178829	0	.	120789593	120789959	0	1	366	0
chr2	120790975	120791337	B_cells_Cheung.178831	0	.	120790975	120791337	0	1	362	0
chr2	120792532	120793002	B_Cells_Pritchard.2885453	0	.	120792532	120793002	0	1	470	0
chr2	120793154	120802239	Rinn_00003832	0	+	120793154	120802239	0	2	30,345	0,8740
chr2	120799056	120799696	B_Cells_Pritchard.2885483	0	.	120799056	120799696	0	1	640	0
chr2	120801695	120802027	A549_Myers.80906	0	.	120801695	120802027	0	1	332	0
chr2	120801896	120802223	B_Cells_Pritchard.2885495	0	.	120801896	120802223	0	1	327	0
chr2	120806772	120807801	prostate_carcinoma.91621	0	.	120806772	120807801	0	1	1029	0
chr2	120811203	120811507	A549_Myers.80911	0	.	120811203	120811507	0	1	304	0
chr2	120827357	120828116	A549_Myers.80913	0	.	120827357	120828116	0	1	759	0
chr2	120863130	120863504	A549_Myers.80919	0	.	120863130	120863504	0	1	374	0
chr2	120869291	120869611	A549_Myers.80920	0	.	120869291	120869611	0	1	320	0
chr2	120869965	120873087	khalil_1116	0	.	120869965	120873087	0	3	451,102,466	0,1635,2656
chr2	120870211	120874026	BT474_Burge_Thompson.32610	0	.	120870211	120874026	0	1	3815	0
chr2	120870258	120873719	T47D_Burge_Thompson.27500	0	.	120870258	120873719	0	1	3461	0
chr2	120871384	120872167	A549_Myers.80922	0	.	120871384	120872167	0	1	783	0
chr2	120873282	120873703	A549_Myers.80924	0	.	120873282	120873703	0	1	421	0
chr2	120873856	120874354	A549_Myers.80925	0	.	120873856	120874354	0	1	498	0
chr2	120874178	120874869	BT474_Burge_Thompson.32611	0	.	120874178	120874869	0	1	691	0
chr2	120875234	120876074	A549_Myers.80927	0	.	120875234	120876074	0	1	840	0
chr2	120889030	120889411	BT20_Thompson.20677	0	.	120889030	120889411	0	1	381	0
chr2	120889032	120889413	MDAMB468_Thompson.23027	0	.	120889032	120889413	0	1	381	0
chr2	120889037	120889410	BT474_Burge_Thompson.32612	0	.	120889037	120889410	0	1	373	0
chr2	120906748	120907331	A549_Myers.80932	0	.	120906748	120907331	0	1	583	0
chr2	120916937	120917774	A549_Myers.80935	0	.	120916937	120917774	0	1	837	0
chr2	120937631	120938000	A549_Myers.80939	0	.	120937631	120938000	0	1	369	0
chr2	120938373	120940370	HepG2_Caltech_ENCODE.35169	0	.	120938373	120940370	0	1	1997	0
chr2	120938380	120940395	NR_027181	0	-	120938380	120940395	0	1	2015	0
chr2	120938380	120940167	HIT000010994	0	-	120938380	120940167	0	1	1787	0
chr2	120939170	120940275	HIT000340334	0	-	120939170	120940275	0	1	1105	0
chr2	120939177	120940263	HIT000387161	0	-	120939177	120940263	0	1	1086	0
chr2	120939278	120939649	A549_Myers.80940	0	.	120939278	120939649	0	1	371	0
chr2	120956572	120959791	prostate_carcinoma.91625	0	.	120956572	120959791	0	1	3219	0
chr2	120958396	120959776	liver_polyA+.120843	0	.	120958396	120959776	0	1	1380	0
chr2	120958834	120959352	prostate_normal.55140	0	.	120958834	120959352	0	1	518	0
chr2	120983091	120983517	A549_Myers.80943	0	.	120983091	120983517	0	1	426	0
chr2	121000083	121000717	A549_Myers.80946	0	.	121000083	121000717	0	1	634	0
chr2	121015218	121042317	pHIT000004876	0	+	121015218	121042317	0	4	122,35,110,39	0,804,11142,27060
chr2	121017842	121019241	prostate_carcinoma.91627	0	.	121017842	121019241	0	1	1399	0
chr2	121017907	121018921	HepG2_Caltech_ENCODE.35170	0	.	121017907	121018921	0	1	1014	0
chr2	121023687	121027423	prostate_carcinoma.91629	0	.	121023687	121027423	0	1	3736	0
chr2	121051013	121051854	Rinn_00003833	0	+	121051013	121051854	0	2	352,275	0,566
chr2	121051013	121056022	Rinn_00003834	0	+	121051013	121056022	0	2	352,1493	0,3516
chr2	121054316	121056190	REMC_LuminalBreast.90876	0	.	121054316	121056190	0	1	1874	0
chr2	121060897	121061433	A549_Myers.80952	0	.	121060897	121061433	0	1	536	0
chr2	121070537	121078265	Rinn_00003836	0	+	121070537	121078265	0	2	336,454	0,7274
chr2	121086002	121109034	pHIT000100093	0	+	121086002	121109034	0	2	382,104	0,22928
chr2	121147460	121147865	A549_Myers.80961	0	.	121147460	121147865	0	1	405	0
chr2	121153106	121153444	A549_Myers.80964	0	.	121153106	121153444	0	1	338	0
chr2	121183307	121184563	Rinn_00003393	0	-	121183307	121184563	0	2	217,255	0,1001
chr2	121183308	121184563	ENST00000421820	0	-	121183308	121184563	0	2	216,254	0,1001
chr2	121202765	121206191	H1_polyA+.106713	0	.	121202765	121206191	0	1	3426	0
chr2	121204706	121205874	prostate_carcinoma.91630	0	.	121204706	121205874	0	1	1168	0
chr2	121204730	121205876	A549_Myers.80969	0	.	121204730	121205876	0	1	1146	0
chr2	121206302	121208386	H1_polyA+.106714	0	.	121206302	121208386	0	1	2084	0
chr2	121206475	121206921	H9_polyA+.42179	0	.	121206475	121206921	0	1	446	0
chr2	121206485	121209650	A549_Myers.80971	0	-	121206485	121209650	0	2	169,385	0,2780
chr2	121209063	121209650	A549_Myers.80972	0	.	121209063	121209650	0	1	587	0
chr2	121505748	121506141	A549_Myers.81059	0	.	121505748	121506141	0	1	393	0
chr2	121518620	121575153	pHIT000100099	0	+	121518620	121575153	0	4	124,53,6,157	0,1274,17853,56376
chr2	121526562	121526923	A549_Myers.81061	0	.	121526562	121526923	0	1	361	0
chr2	121536552	121537079	A549_Myers.81063	0	.	121536552	121537079	0	1	527	0
chr2	121548668	121549472	REMC_MyoepithelialBreast.84259	0	.	121548668	121549472	0	1	804	0
chr2	121550003	121550396	A549_Myers.81082	0	.	121550003	121550396	0	1	393	0
chr2	121551056	121551384	A549_Myers.81083	0	.	121551056	121551384	0	1	328	0
chr2	121555884	121556221	A549_Myers.81084	0	.	121555884	121556221	0	1	337	0
chr2	121573501	121573813	A549_Myers.81086	0	.	121573501	121573813	0	1	312	0
chr2	121601742	121602317	A549_Myers.81088	0	.	121601742	121602317	0	1	575	0
chr2	121607860	121608466	A549_Myers.81090	0	.	121607860	121608466	0	1	606	0
chr2	121610636	121660794	REMC_LuminalBreast.90878	0	-	121610636	121660794	0	3	1745,164,322	0,47036,49836
chr2	121621675	121622877	REMC_LuminalBreast.90880	0	.	121621675	121622877	0	1	1202	0
chr2	121623121	121624799	REMC_LuminalBreast.90881	0	.	121623121	121624799	0	1	1678	0
chr2	121628820	121630417	REMC_LuminalBreast.90882	0	.	121628820	121630417	0	1	1597	0
chr2	121640229	121641348	REMC_LuminalBreast.90886	0	.	121640229	121641348	0	1	1119	0
chr2	121643397	121649469	REMC_LuminalBreast.90888	0	.	121643397	121649469	0	1	6072	0
chr2	121657116	121660794	REMC_LuminalBreast.90879	0	.	121657116	121660794	0	1	3678	0
chr2	121665312	121667750	REMC_LuminalBreast.90891	0	.	121665312	121667750	0	1	2438	0
chr2	121667894	121673029	REMC_LuminalBreast.90892	0	.	121667894	121673029	0	1	5135	0
chr2	121673155	121678953	REMC_LuminalBreast.90893	0	.	121673155	121678953	0	1	5798	0
chr2	121674202	121674634	A549_Myers.81096	0	.	121674202	121674634	0	1	432	0
chr2	121682604	121684891	REMC_LuminalBreast.90895	0	.	121682604	121684891	0	1	2287	0
chr2	121682854	121683225	B_Cells_Pritchard.2887965	0	.	121682854	121683225	0	1	371	0
chr2	121684674	121685287	A549_Myers.81097	0	.	121684674	121685287	0	1	613	0
chr2	121684956	121687262	REMC_LuminalBreast.90896	0	.	121684956	121687262	0	1	2306	0
chr2	121686254	121686636	B_Cells_Pritchard.2887983	0	.	121686254	121686636	0	1	382	0
chr2	121687284	121687923	B_Cells_Pritchard.2887985	0	.	121687284	121687923	0	1	639	0
chr2	121770377	121770682	A549_Myers.81115	0	.	121770377	121770682	0	1	305	0
chr2	121798466	121799834	REMC_LuminalBreast.90906	0	.	121798466	121799834	0	1	1368	0
chr2	121801316	121803270	REMC_LuminalBreast.90908	0	.	121801316	121803270	0	1	1954	0
chr2	121801637	121803736	REMC_MyoepithelialBreast.84287	0	.	121801637	121803736	0	1	2099	0
chr2	121805590	121807103	REMC_LuminalBreast.90910	0	.	121805590	121807103	0	1	1513	0
chr2	121806370	121807122	REMC_MyoepithelialBreast.84289	0	.	121806370	121807122	0	1	752	0
chr2	121808151	121809096	REMC_MyoepithelialBreast.84291	0	.	121808151	121809096	0	1	945	0
chr2	122124033	122125583	Rinn_00002719	0	+	122124033	122125583	0	3	116,82,1071	0,312,479
chr2	122124524	122125545	MDAMB468_Thompson.23037	0	.	122124524	122125545	0	1	1021	0
chr2	122124529	122125569	MeI_Garraway.16445	0	.	122124529	122125569	0	1	1040	0
chr2	122124537	122125305	H9_polyA+.42245	0	.	122124537	122125305	0	1	768	0
chr2	122124552	122125228	liver_polyA+.120931	0	.	122124552	122125228	0	1	676	0
chr2	122124560	122125145	H1_rRNA-depleted_UCSD_REMC.80326	0	.	122124560	122125145	0	1	585	0
chr2	122124673	122125139	MB435_Burge.40598	0	.	122124673	122125139	0	1	466	0
chr2	122124702	122125227	NEC_from_H9.69789	0	.	122124702	122125227	0	1	525	0
chr2	122124767	122125110	IMR90_UCSD_REMC.45770	0	-	122124767	122125110	0	1	343	0
chr2	122126032	122127586	REMC_MyoepithelialBreast.84294	0	.	122126032	122127586	0	1	1554	0
chr2	122127220	122128306	prostate_normal.55169	0	.	122127220	122128306	0	1	1086	0
chr2	122127473	122127856	spleen_Raymond.175749	0	.	122127473	122127856	0	1	383	0
chr2	122127479	122127853	ovary_Raymond.224595	0	.	122127479	122127853	0	1	374	0
chr2	122128041	122128355	HepG2_Caltech_ENCODE.35185	0	.	122128041	122128355	0	1	314	0
chr2	122128382	122131195	B_cells_Cheung.178878	0	.	122128382	122131195	0	1	2813	0
chr2	122133501	122134478	B_cells_Cheung.178881	0	.	122133501	122134478	0	1	977	0
chr2	122133520	122134816	K562.42295	0	.	122133520	122134816	0	1	1296	0
chr2	122138620	122145608	H1_polyA+.107104	0	.	122138620	122145608	0	1	6988	0
chr2	122141028	122145528	B_cells_Cheung.178889	0	.	122141028	122145528	0	1	4500	0
chr2	122145718	122151024	H1_polyA+.107112	0	.	122145718	122151024	0	1	5306	0
chr2	122147888	122149133	B_cells_Cheung.178894	0	.	122147888	122149133	0	1	1245	0
chr2	122149711	122151012	B_cells_Cheung.178896	0	.	122149711	122151012	0	1	1301	0
chr2	122159805	122160908	H1_polyA+.107117	0	.	122159805	122160908	0	1	1103	0
chr2	122165148	122167011	H1_polyA+.107120	0	.	122165148	122167011	0	1	1863	0
chr2	122166111	122166529	B_cells_Cheung.178908	0	.	122166111	122166529	0	1	418	0
chr2	122168322	122169871	H1_polyA+.107121	0	.	122168322	122169871	0	1	1549	0
chr2	122168434	122169437	HepG2_Caltech_ENCODE.35199	0	.	122168434	122169437	0	1	1003	0
chr2	122168629	122169502	B_cells_Cheung.178909	0	.	122168629	122169502	0	1	873	0
chr2	122168889	122169458	prostate_carcinoma.91684	0	.	122168889	122169458	0	1	569	0
chr2	122171372	122171814	B_cells_Cheung.178910	0	.	122171372	122171814	0	1	442	0
chr2	122173445	122175054	H1_polyA+.107123	0	.	122173445	122175054	0	1	1609	0
chr2	122173686	122174466	B_Cells_Pritchard.2889205	0	+	122173686	122174466	0	1	780	0
chr2	122173881	122174467	A549_Myers.81140	0	.	122173881	122174467	0	1	586	0
chr2	122174280	122175203	REMC_MyoepithelialBreast.84298	0	.	122174280	122175203	0	1	923	0
chr2	122245137	122246758	REMC_LuminalBreast.91044	0	.	122245137	122246758	0	1	1621	0
chr2	122251205	122251921	REMC_LuminalBreast.91046	0	.	122251205	122251921	0	1	716	0
chr2	122251246	122253251	REMC_MyoepithelialBreast.84320	0	.	122251246	122253251	0	1	2005	0
chr2	122264510	122270402	ENST00000435895	0	+	122264510	122270402	0	5	55,323,47,225,116	0,666,2724,4033,5776
chr2	122268542	122269098	B_Cells_Pritchard.2889621	0	.	122268542	122269098	0	1	556	0
chr2	122364156	122364523	B_Cells_Pritchard.2889973	0	.	122364156	122364523	0	1	367	0
chr2	122376357	122681210	melanoma_Garraway_short_term_cultures.63962	0	+	122376357	122681210	0	3	678,114,102	0,42022,304751
chr2	122376463	122377005	B_Cells_Pritchard.2890005	0	.	122376463	122377005	0	1	542	0
chr2	122421693	122422920	melanoma_Garraway_short_term_cultures.63965	0	.	122421693	122422920	0	1	1227	0
chr2	122439662	122440292	melanoma_Garraway_short_term_cultures.63971	0	.	122439662	122440292	0	1	630	0
chr2	122445025	122446171	melanoma_Garraway_short_term_cultures.63975	0	.	122445025	122446171	0	1	1146	0
chr2	122449912	122450455	B_Cells_Pritchard.2890273	0	.	122449912	122450455	0	1	543	0
chr2	122469129	122470289	REMC_MyoepithelialBreast.84334	0	.	122469129	122470289	0	1	1160	0
chr2	122469716	122472659	HIT000019895	0	+	122469716	122472659	0	1	2943	0
chr2	122477636	122478814	melanoma_Garraway_short_term_cultures.63983	0	.	122477636	122478814	0	1	1178	0
chr2	122481086	122482382	melanoma_Garraway_short_term_cultures.63984	0	.	122481086	122482382	0	1	1296	0
chr2	122501565	122502429	melanoma_Garraway_short_term_cultures.63988	0	.	122501565	122502429	0	1	864	0
chr2	122514912	122517609	melanoma_Garraway_short_term_cultures.63990	0	.	122514912	122517609	0	1	2697	0
chr2	122517855	122518491	melanoma_Garraway_short_term_cultures.63991	0	.	122517855	122518491	0	1	636	0
chr2	122588238	122588829	melanoma_Garraway_short_term_cultures.63999	0	.	122588238	122588829	0	1	591	0
chr2	122627403	122627984	melanoma_Garraway_short_term_cultures.64001	0	.	122627403	122627984	0	1	581	0
chr2	122630297	122631691	melanoma_Garraway_short_term_cultures.64002	0	.	122630297	122631691	0	1	1394	0
chr2	122639481	122640436	melanoma_Garraway_short_term_cultures.64007	0	.	122639481	122640436	0	1	955	0
chr2	122648152	122648954	melanoma_Garraway_short_term_cultures.64008	0	.	122648152	122648954	0	1	802	0
chr2	122659872	122660455	melanoma_Garraway_short_term_cultures.64009	0	.	122659872	122660455	0	1	583	0
chr2	122691721	122693827	melanoma_Garraway_short_term_cultures.64014	0	.	122691721	122693827	0	1	2106	0
chr2	122709808	122710648	melanoma_Garraway_short_term_cultures.64022	0	.	122709808	122710648	0	1	840	0
chr2	122712333	122713507	REMC_MyoepithelialBreast.84350	0	.	122712333	122713507	0	1	1174	0
chr2	122715009	122717293	melanoma_Garraway_short_term_cultures.64026	0	.	122715009	122717293	0	1	2284	0
chr2	122717573	122720189	melanoma_Garraway_short_term_cultures.64027	0	.	122717573	122720189	0	1	2616	0
chr2	122750555	122751480	melanoma_Garraway_short_term_cultures.64031	0	.	122750555	122751480	0	1	925	0
chr2	122766666	122767709	melanoma_Garraway_short_term_cultures.64036	0	.	122766666	122767709	0	1	1043	0
chr2	122773014	122773889	melanoma_Garraway_short_term_cultures.64037	0	.	122773014	122773889	0	1	875	0
chr2	122879463	122881135	melanoma_Garraway_short_term_cultures.64053	0	.	122879463	122881135	0	1	1672	0
chr2	123034538	123036140	prostate_carcinoma.91724	0	.	123034538	123036140	0	1	1602	0
chr2	123038337	123040588	prostate_carcinoma.91726	0	.	123038337	123040588	0	1	2251	0
chr2	123056403	123057225	prostate_normal.55184	0	.	123056403	123057225	0	1	822	0
chr2	123057223	123058237	melanoma_Garraway_short_term_cultures.64063	0	.	123057223	123058237	0	1	1014	0
chr2	123133391	123139054	prostate_carcinoma.91734	0	.	123133391	123139054	0	1	5663	0
chr2	123134194	123139000	H1_polyA+.106941	0	+	123134194	123139000	0	4	1711,363,152,1166	0,2388,2831,3640
chr2	123134762	123135970	B_cells_Cheung.178957	0	.	123134762	123135970	0	1	1208	0
chr2	123138039	123138959	melanoma_Garraway_short_term_cultures.64066	0	.	123138039	123138959	0	1	920	0
chr2	123141573	123142038	prostate_carcinoma.91737	0	.	123141573	123142038	0	1	465	0
chr2	123151154	123153272	prostate_carcinoma.91742	0	.	123151154	123153272	0	1	2118	0
chr2	123212309	123222479	Rinn_00003846	0	+	123212309	123222479	0	2	27,320	0,9850
chr2	123277766	123282647	Rinn_00005248	0	-	123277766	123282647	0	2	157,284	0,4597
chr2	123282009	123282562	B_Cells_Pritchard.2892421	0	.	123282009	123282562	0	1	553	0
chr2	123301383	123301818	B_Cells_Pritchard.2892507	0	.	123301383	123301818	0	1	435	0
chr2	123310538	123313230	B_cells_Cheung.179131	0	.	123310538	123313230	0	1	2692	0
chr2	123311589	123312994	B_Cells_Pritchard.2892551	0	.	123311589	123312994	0	1	1405	0
chr2	123324220	123327132	B_cells_Cheung.179145	0	.	123324220	123327132	0	1	2912	0
chr2	123332499	123335544	B_cells_Cheung.179153	0	.	123332499	123335544	0	1	3045	0
chr2	123333101	123334348	B_Cells_Pritchard.2892605	0	-	123333101	123334348	0	1	1247	0
chr2	123333288	123333988	prostate_carcinoma.91750	0	.	123333288	123333988	0	1	700	0
chr2	123337019	123338001	B_cells_Cheung.179155	0	.	123337019	123338001	0	1	982	0
chr2	123337213	123338023	B_Cells_Pritchard.2892621	0	.	123337213	123338023	0	1	810	0
chr2	123345010	123345762	B_cells_Cheung.179167	0	.	123345010	123345762	0	1	752	0
chr2	124486091	124488460	HIT000017060	0	-	124486091	124488460	0	1	2369	0
chr2	125435011	125435435	B_Cells_Pritchard.2896737	0	.	125435011	125435435	0	1	424	0
chr2	125923493	125923839	B_cells_Cheung.179056	0	.	125923493	125923839	0	1	346	0
chr2	125940552	125941212	B_cells_Cheung.179057	0	.	125940552	125941212	0	1	660	0
chr2	126627109	126627818	K562.42203	0	.	126627109	126627818	0	1	709	0
chr2	126647667	126648625	K562.42205	0	.	126647667	126648625	0	1	958	0
chr2	126781895	126782477	K562.42212	0	.	126781895	126782477	0	1	582	0
chr2	126782141	126782497	B_Cells_Pritchard.2899465	0	.	126782141	126782497	0	1	356	0
chr2	126956699	126957071	A549_Myers.81160	0	.	126956699	126957071	0	1	372	0
chr2	127008170	127010574	K562.42221	0	.	127008170	127010574	0	1	2404	0
chr2	127172379	127172790	B_Cells_Pritchard.2900341	0	.	127172379	127172790	0	1	411	0
chr2	127203905	127205007	REMC_MyoepithelialBreast.84370	0	.	127203905	127205007	0	1	1102	0
chr2	127217065	127218522	REMC_MyoepithelialBreast.84372	0	.	127217065	127218522	0	1	1457	0
chr2	127250591	127251077	A549_Myers.81165	0	.	127250591	127251077	0	1	486	0
chr2	127250703	127251122	B_Cells_Pritchard.2900627	0	.	127250703	127251122	0	1	419	0
chr2	127355504	127360501	HIT000045743	0	+	127355504	127360501	0	1	4997	0
chr2	127360011	127360762	A549_Myers.81166	0	.	127360011	127360762	0	1	751	0
chr2	127372941	127373681	ENST00000454927	0	+	127372941	127373681	0	3	222,75,113	0,321,627
chr2	127372953	127376143	ENST00000458326	0	+	127372953	127376143	0	7	156,75,90,55,69,40,229	0,309,615,891,2302,2457,2961
chr2	127372960	127376143	ENST00000450035	0	+	127372960	127376143	0	7	149,75,90,84,69,40,229	0,302,608,1021,2295,2450,2954
chr2	127372979	127373473	ENST00000437793	0	+	127372979	127373473	0	2	184,211	0,283
chr2	127373264	127376143	ENST00000436605	0	+	127373264	127376143	0	5	73,90,18,69,229	0,304,617,1991,2650
chr2	127410906	127490663	pHIT000100113	0	+	127410906	127490663	0	5	71,97,112,92,117	0,519,1256,41784,79640
chr2	127445842	127446576	A549_Myers.81167	0	.	127445842	127446576	0	1	734	0
chr2	127453991	127454350	A549_Myers.81168	0	.	127453991	127454350	0	1	359	0
chr2	127498176	127500453	H1_polyA+.106952	0	.	127498176	127500453	0	1	2277	0
chr2	127498232	127499769	HIT000265163	0	-	127498232	127499769	0	1	1537	0
chr2	127498505	127500049	brain_AmbionMAQC.42060	0	.	127498505	127500049	0	1	1544	0
chr2	127498558	127499889	A549_Myers.81169	0	.	127498558	127499889	0	1	1331	0
chr2	127607034	127620630	pHIT000100119	0	+	127607034	127620630	0	3	72,65,271	0,249,13325
chr2	127607034	127620621	pHIT000100118	0	+	127607034	127620621	0	3	72,65,262	0,249,13325
chr2	127609316	127613042	prostate_carcinoma.91775	0	.	127609316	127613042	0	1	3726	0
chr2	127609879	127611121	prostate_normal.55194	0	.	127609879	127611121	0	1	1242	0
chr2	127627979	127629196	REMC_BreastStem.46091	0	.	127627979	127629196	0	1	1217	0
chr2	127863733	127864378	prostate_carcinoma.91899	0	.	127863733	127864378	0	1	645	0
chr2	127863920	127864433	REMC_MyoepithelialBreast.84544	0	.	127863920	127864433	0	1	513	0
chr2	127873062	127874957	MIP101.63799	0	.	127873062	127874957	0	1	1895	0
chr2	127874468	127874981	REMC_MyoepithelialBreast.84547	0	.	127874468	127874981	0	1	513	0
chr2	127874831	127876403	REMC_LuminalBreast.91177	0	.	127874831	127876403	0	1	1572	0
chr2	127875578	127876290	B_cells_Cheung.179210	0	.	127875578	127876290	0	1	712	0
chr2	127876973	127879635	REMC_MyoepithelialBreast.84549	0	.	127876973	127879635	0	1	2662	0
chr2	127877541	127878182	prostate_carcinoma.91791	0	.	127877541	127878182	0	1	641	0
chr2	127877555	127881632	H1_polyA+.107292	0	.	127877555	127881632	0	1	4077	0
chr2	127877637	127878066	liver_polyA+.121036	0	.	127877637	127878066	0	1	429	0
chr2	127878259	127879455	MCF10A_Thompson.20064	0	.	127878259	127879455	0	1	1196	0
chr2	127878502	127879602	HeLa_polyA+_Chen.33555	0	.	127878502	127879602	0	1	1100	0
chr2	127878597	127879447	A549_Myers.81233	0	.	127878597	127879447	0	1	850	0
chr2	127878873	127879296	ZR751_Thompson.22581	0	.	127878873	127879296	0	1	423	0
chr2	127880712	127882224	prostate_carcinoma.91793	0	.	127880712	127882224	0	1	1512	0
chr2	127881952	127882865	MCF7_Burge_Thompson.29888	0	.	127881952	127882865	0	1	913	0
chr2	127882075	127882853	A549_Myers.81237	0	.	127882075	127882853	0	1	778	0
chr2	127882229	127882726	T47D_Burge_Thompson.27537	0	.	127882229	127882726	0	1	497	0
chr2	127882285	127883198	REMC_BreastStem.46181	0	.	127882285	127883198	0	1	913	0
chr2	127882447	127882757	H1_polyA+.107293	0	.	127882447	127882757	0	1	310	0
chr2	127882642	127883763	REMC_MyoepithelialBreast.84389	0	.	127882642	127883763	0	1	1121	0
chr2	127884746	127886997	REMC_MyoepithelialBreast.84390	0	.	127884746	127886997	0	1	2251	0
chr2	127885234	127886294	Rinn_00004436	0	-	127885234	127886294	0	2	624,158	0,902
chr2	127889707	127890624	A549_Myers.81239	0	.	127889707	127890624	0	1	917	0
chr2	127889924	127890311	liver_polyA+.121041	0	.	127889924	127890311	0	1	387	0
chr2	127890539	127891016	liver_polyA+.121042	0	.	127890539	127891016	0	1	477	0
chr2	127905132	127907060	REMC_LuminalBreast.91085	0	.	127905132	127907060	0	1	1928	0
chr2	127905467	127906714	prostate_carcinoma.91806	0	.	127905467	127906714	0	1	1247	0
chr2	127905615	127906842	REMC_MyoepithelialBreast.84399	0	.	127905615	127906842	0	1	1227	0
chr2	128157951	128158316	A549_Myers.81305	0	.	128157951	128158316	0	1	365	0
chr2	128158327	128159062	REMC_LuminalBreast.91128	0	.	128158327	128159062	0	1	735	0
chr2	128160878	128164503	REMC_LuminalBreast.91130	0	.	128160878	128164503	0	1	3625	0
chr2	128164629	128166444	REMC_LuminalBreast.91131	0	.	128164629	128166444	0	1	1815	0
chr2	128165761	128166223	B_cells_Cheung.179291	0	.	128165761	128166223	0	1	462	0
chr2	128165783	128166492	prostate_carcinoma.91840	0	.	128165783	128166492	0	1	709	0
chr2	128171685	128173979	melanoma_Garraway_short_term_cultures.64136	0	.	128171685	128173979	0	1	2294	0
chr2	128314464	128315590	REMC_LuminalBreast.91146	0	.	128314464	128315590	0	1	1126	0
chr2	128314616	128315593	REMC_BreastStem.46123	0	.	128314616	128315593	0	1	977	0
chr2	128314665	128315527	REMC_MyoepithelialBreast.84555	0	.	128314665	128315527	0	1	862	0
chr2	128314758	128315698	H1_polyA+.107015	0	.	128314758	128315698	0	1	940	0
chr2	128315113	128315473	BT474_Burge_Thompson.32651	0	.	128315113	128315473	0	1	360	0
chr2	128316962	128318740	CD4_Plagnol_activated.60957	0	.	128316962	128318740	0	1	1778	0
chr2	128317585	128318723	liver_polyA+.121163	0	.	128317585	128318723	0	1	1138	0
chr2	128317593	128318739	brain_AmbionMAQC.42104	0	.	128317593	128318739	0	1	1146	0
chr2	128317595	128318740	melanoma_Garraway_short_term_cultures.64172	0	.	128317595	128318740	0	1	1145	0
chr2	128317602	128318749	MDAMB468_Thompson.23067	0	.	128317602	128318749	0	1	1147	0
chr2	128317609	128318742	MCF7_Burge_Thompson.29891	0	.	128317609	128318742	0	1	1133	0
chr2	128317680	128318644	MeI_Garraway.16470	0	.	128317680	128318644	0	1	964	0
chr2	128318031	128318735	A549_Myers.81346	0	.	128318031	128318735	0	1	704	0
chr2	128363580	128363958	H1_polyA+.107027	0	.	128363580	128363958	0	1	378	0
chr2	128366855	128367957	melanoma_Garraway_short_term_cultures.64193	0	.	128366855	128367957	0	1	1102	0
chr2	128366860	128368006	MeWo_Garraway.34310	0	.	128366860	128368006	0	1	1146	0
chr2	128366865	128367939	MeI_Garraway.16469	0	.	128366865	128367939	0	1	1074	0
chr2	128366884	128368097	B_Cells_Pritchard.2903177	0	.	128366884	128368097	0	1	1213	0
chr2	128366895	128368597	REMC_MyoepithelialBreast.84617	0	.	128366895	128368597	0	1	1702	0
chr2	128367513	128367850	liver_polyA+.121183	0	.	128367513	128367850	0	1	337	0
chr2	128367547	128367859	prostate_normal.55248	0	.	128367547	128367859	0	1	312	0
chr2	128371319	128371668	B_cells_Cheung.179335	0	.	128371319	128371668	0	1	349	0
chr2	128376660	128377250	REMC_LuminalBreast.91180	0	.	128376660	128377250	0	1	590	0
chr2	128376794	128377250	melanoma_Garraway_short_term_cultures.64200	0	.	128376794	128377250	0	1	456	0
chr2	128377573	128381177	REMC_BreastStem.46190	0	.	128377573	128381177	0	1	3604	0
chr2	128381337	128382183	REMC_BreastStem.46148	0	.	128381337	128382183	0	1	846	0
chr2	128382478	128383707	REMC_BreastStem.46149	0	.	128382478	128383707	0	1	1229	0
chr2	128400157	128401167	REMC_BreastStem.46158	0	.	128400157	128401167	0	1	1010	0
chr2	128403372	128404324	REMC_BreastStem.46160	0	.	128403372	128404324	0	1	952	0
chr2	128410627	128411561	REMC_BreastStem.46163	0	.	128410627	128411561	0	1	934	0
chr2	128563258	128563767	H1_polyA+.107129	0	.	128563258	128563767	0	1	509	0
chr2	128672227	128673376	REMC_BreastStem.46185	0	.	128672227	128673376	0	1	1149	0
chr2	128672451	128673479	H1_polyA+.107529	0	.	128672451	128673479	0	1	1028	0
chr2	128672468	128673574	B_cells_Cheung.179401	0	.	128672468	128673574	0	1	1106	0
chr2	128672479	128673487	melanoma_Garraway_short_term_cultures.64209	0	.	128672479	128673487	0	1	1008	0
chr2	128672512	128673262	CD4_Plagnol_activated.60998	0	.	128672512	128673262	0	1	750	0
chr2	128672630	128673444	MIP101.63907	0	.	128672630	128673444	0	1	814	0
chr2	128680408	128682619	REMC_MyoepithelialBreast.84597	0	.	128680408	128682619	0	1	2211	0
chr2	128681591	128682381	REMC_LuminalBreast.91212	0	.	128681591	128682381	0	1	790	0
chr2	128681972	128682523	B_cells_Cheung.179407	0	.	128681972	128682523	0	1	551	0
chr2	128683454	128683814	REMC_LuminalBreast.91214	0	.	128683454	128683814	0	1	360	0
chr2	128684612	128685828	REMC_LuminalBreast.91215	0	.	128684612	128685828	0	1	1216	0
chr2	128685201	128686065	REMC_MyoepithelialBreast.84599	0	.	128685201	128686065	0	1	864	0
chr2	128688329	128689678	REMC_LuminalBreast.91217	0	.	128688329	128689678	0	1	1349	0
chr2	128689131	128689478	B_Cells_Pritchard.2909363	0	+	128689131	128689478	0	1	347	0
chr2	128689680	128690815	REMC_MyoepithelialBreast.84601	0	.	128689680	128690815	0	1	1135	0
chr2	128690013	128690710	REMC_LuminalBreast.91218	0	.	128690013	128690710	0	1	697	0
chr2	128693757	128695783	REMC_LuminalBreast.91221	0	.	128693757	128695783	0	1	2026	0
chr2	128694357	128695633	REMC_BreastStem.46192	0	.	128694357	128695633	0	1	1276	0
chr2	128703444	128704407	REMC_LuminalBreast.91226	0	.	128703444	128704407	0	1	963	0
chr2	128704539	128706385	REMC_LuminalBreast.91227	0	.	128704539	128706385	0	1	1846	0
chr2	128704756	128705651	REMC_MyoepithelialBreast.84608	0	.	128704756	128705651	0	1	895	0
chr2	128704787	128705594	HepG2_Caltech_ENCODE.35281	0	.	128704787	128705594	0	1	807	0
chr2	128704928	128705449	H1_polyA+.107132	0	.	128704928	128705449	0	1	521	0
chr2	128707164	128708157	REMC_BreastStem.46196	0	.	128707164	128708157	0	1	993	0
chr2	128707225	128707752	B_Cells_Pritchard.2903831	0	.	128707225	128707752	0	1	527	0
chr2	128707305	128708392	REMC_LuminalBreast.91228	0	.	128707305	128708392	0	1	1087	0
chr2	128707574	128709656	REMC_MyoepithelialBreast.84610	0	.	128707574	128709656	0	1	2082	0
chr2	128707612	128707922	A549_Myers.81356	0	.	128707612	128707922	0	1	310	0
chr2	128794762	128795998	H1_polyA+.107155	0	.	128794762	128795998	0	1	1236	0
chr2	128796296	128797025	A549_Myers.81390	0	.	128796296	128797025	0	1	729	0
chr2	128797793	128798821	H1_polyA+.107156	0	.	128797793	128798821	0	1	1028	0
chr2	128805525	128808436	REMC_LuminalBreast.91245	0	.	128805525	128808436	0	1	2911	0
chr2	128805563	128806654	H1_polyA+.107159	0	.	128805563	128806654	0	1	1091	0
chr2	128820034	128820521	prostate_carcinoma.91951	0	.	128820034	128820521	0	1	487	0
chr2	128821503	128822148	prostate_carcinoma.91952	0	.	128821503	128822148	0	1	645	0
chr2	128822464	128823791	REMC_LuminalBreast.91248	0	.	128822464	128823791	0	1	1327	0
chr2	128827676	128828909	H1_polyA+.107168	0	.	128827676	128828909	0	1	1233	0
chr2	128832856	128833630	H1_polyA+.107170	0	.	128832856	128833630	0	1	774	0
chr2	128832997	128833450	A549_Myers.81393	0	.	128832997	128833450	0	1	453	0
chr2	128836444	128836800	H1_rRNA-depleted_UCSD_REMC.80491	0	.	128836444	128836800	0	1	356	0
chr2	128840342	128841054	REMC_LuminalBreast.91251	0	.	128840342	128841054	0	1	712	0
chr2	128847974	128848332	A549_Myers.81395	0	.	128847974	128848332	0	1	358	0
chr2	128849511	128853091	HIT000048097	0	+	128849511	128853091	0	1	3580	0
chr2	128849572	128850009	A549_Myers.81396	0	.	128849572	128850009	0	1	437	0
chr2	128875998	128876428	BT474_Burge_Thompson.32688	0	.	128875998	128876428	0	1	430	0
chr2	128880593	128881054	B_Cells_Pritchard.2904405	0	.	128880593	128881054	0	1	461	0
chr2	128889342	128890131	REMC_LuminalBreast.91252	0	.	128889342	128890131	0	1	789	0
chr2	128893628	128894534	H1_polyA+.107171	0	.	128893628	128894534	0	1	906	0
chr2	128908359	128909255	prostate_carcinoma.91956	0	.	128908359	128909255	0	1	896	0
chr2	128912008	128912766	prostate_carcinoma.91957	0	.	128912008	128912766	0	1	758	0
chr2	128920414	128920867	A549_Myers.81397	0	.	128920414	128920867	0	1	453	0
chr2	128921279	128921863	prostate_carcinoma.91958	0	.	128921279	128921863	0	1	584	0
chr2	128922239	128922925	prostate_carcinoma.91959	0	.	128922239	128922925	0	1	686	0
chr2	128925170	128926473	prostate_carcinoma.91961	0	.	128925170	128926473	0	1	1303	0
chr2	128927475	128928629	REMC_LuminalBreast.91261	0	.	128927475	128928629	0	1	1154	0
chr2	128939189	128939583	B_Cells_Pritchard.2904541	0	.	128939189	128939583	0	1	394	0
chr2	128961929	128963553	REMC_LuminalBreast.91268	0	.	128961929	128963553	0	1	1624	0
chr2	128962202	128962941	prostate_carcinoma.91964	0	.	128962202	128962941	0	1	739	0
chr2	128963839	128964519	REMC_LuminalBreast.91269	0	.	128963839	128964519	0	1	680	0
chr2	129054533	129055620	Rinn_00003400	0	-	129054533	129055620	0	2	160,199	0,888
chr2	129067174	129069253	prostate_carcinoma.91967	0	.	129067174	129069253	0	1	2079	0
chr2	129068429	129069246	prostate_normal.55296	0	.	129068429	129069246	0	1	817	0
chr2	129118812	129122221	H1_polyA+.107173	0	+	129118812	129122221	0	2	1380,1154	0,2255
chr2	129120800	129122221	H1_polyA+.107174	0	.	129120800	129122221	0	1	1421	0
chr2	129164141	129164893	B_Cells_Pritchard.2905211	0	.	129164141	129164893	0	1	752	0
chr2	129212829	129214702	H1_polyA+.107179	0	.	129212829	129214702	0	1	1873	0
chr2	129341868	129343861	H1_polyA+.107183	0	.	129341868	129343861	0	1	1993	0
chr2	129615833	129616985	B_cells_Cheung.179471	0	.	129615833	129616985	0	1	1152	0
chr2	129774035	129774371	A549_Myers.81412	0	.	129774035	129774371	0	1	336	0
chr2	129821573	129822152	B_Cells_Pritchard.2906831	0	.	129821573	129822152	0	1	579	0
chr2	129834105	129835023	B_Cells_Pritchard.2906883	0	.	129834105	129835023	0	1	918	0
chr2	129834118	129834714	B_cells_Cheung.179476	0	.	129834118	129834714	0	1	596	0
chr2	129850648	129850985	B_Cells_Pritchard.2906971	0	.	129850648	129850985	0	1	337	0
chr2	129910713	129914516	B_cells_Cheung.179477	0	.	129910713	129914516	0	1	3803	0
chr2	129910714	129917111	B_Cells_Pritchard.2907123	0	.	129910714	129917111	0	1	6397	0
chr2	130038468	130040252	HIT000049524	0	-	130038468	130040252	0	1	1784	0
chr2	130059967	130062045	Rinn_00004444	0	-	130059967	130062045	0	2	539,963	0,1115
chr2	130233044	130234822	B_Cells_Pritchard.2907887	0	+	130233044	130234822	0	2	554,198	0,1580
chr2	130233062	130233835	BT474_Burge_Thompson.32694	0	.	130233062	130233835	0	1	773	0
chr2	130233330	130233761	MCF7_Burge_Thompson.29938	0	.	130233330	130233761	0	1	431	0
chr2	130233887	130234349	BT474_Burge_Thompson.32695	0	.	130233887	130234349	0	1	462	0
chr2	130233913	130234269	B_Cells_Pritchard.2907893	0	+	130233913	130234269	0	1	356	0
chr2	130270324	130270824	A549_Myers.81417	0	.	130270324	130270824	0	1	500	0
chr2	130334522	130335070	B_cells_Cheung.179481	0	.	130334522	130335070	0	1	548	0
chr2	130342135	130343545	B_Cells_Pritchard.2908267	0	.	130342135	130343545	0	1	1410	0
chr2	130342183	130343751	B_cells_Cheung.179485	0	.	130342183	130343751	0	1	1568	0
chr2	130342190	130343578	H1_polyA+.107187	0	.	130342190	130343578	0	1	1388	0
chr2	130342317	130343575	prostate_carcinoma.91970	0	.	130342317	130343575	0	1	1258	0
chr2	130342320	130342731	BT474_Burge_Thompson.32697	0	.	130342320	130342731	0	1	411	0
chr2	130342856	130343574	MIP101.63932	0	.	130342856	130343574	0	1	718	0
chr2	130348574	130348933	B_Cells_Pritchard.2908287	0	.	130348574	130348933	0	1	359	0
chr2	130449131	130449872	REMC_LuminalBreast.91272	0	.	130449131	130449872	0	1	741	0
chr2	130524937	130525253	HepG2_Caltech_ENCODE.35318	0	.	130524937	130525253	0	1	316	0
chr2	130774390	130774777	A549_Myers.81430	0	.	130774390	130774777	0	1	387	0
chr2	130776637	130777010	A549_Myers.81431	0	.	130776637	130777010	0	1	373	0
chr2	130792033	130792336	A549_Myers.81432	0	.	130792033	130792336	0	1	303	0
chr2	130810187	130810978	REMC_MyoepithelialBreast.84662	0	.	130810187	130810978	0	1	791	0
chr2	130825388	130826953	B_cells_Cheung.179573	0	.	130825388	130826953	0	1	1565	0
chr2	130825399	130826325	prostate_normal.55353	0	.	130825399	130826325	0	1	926	0
chr2	130826063	130826939	melanoma_Garraway_short_term_cultures.64265	0	.	130826063	130826939	0	1	876	0
chr2	130827137	130827559	B_cells_Cheung.179574	0	.	130827137	130827559	0	1	422	0
chr2	130827161	130828144	B_Cells_Pritchard.2909379	0	.	130827161	130828144	0	1	983	0
chr2	130851452	130851947	B_cells_Cheung.179588	0	.	130851452	130851947	0	1	495	0
chr2	130852647	130856167	B_cells_Cheung.179590	0	.	130852647	130856167	0	1	3520	0
chr2	130856228	130857888	B_cells_Cheung.179591	0	.	130856228	130857888	0	1	1660	0
chr2	130856264	130856891	prostate_carcinoma.92037	0	.	130856264	130856891	0	1	627	0
chr2	130860506	130862358	B_cells_Cheung.179595	0	.	130860506	130862358	0	1	1852	0
chr2	130862461	130865388	B_Cells_Pritchard.2909517	0	.	130862461	130865388	0	1	2927	0
chr2	130864443	130865913	prostate_carcinoma.92039	0	.	130864443	130865913	0	1	1470	0
chr2	130864687	130865360	A549_Myers.81447	0	.	130864687	130865360	0	1	673	0
chr2	130864758	130865324	B_cells_Cheung.179601	0	.	130864758	130865324	0	1	566	0
chr2	130865537	130865998	B_Cells_Pritchard.2909519	0	.	130865537	130865998	0	1	461	0
chr2	131140607	131153944	Rinn_00003872	0	+	131140607	131153944	0	2	10221,178	0,13159
chr2	131155270	131165732	HIT000018148	0	+	131155270	131165732	0	5	1013,198,223,171,155	0,2103,3906,8925,10307
chr2	131155270	131165734	ENST00000450440	0	+	131155270	131165734	0	5	1013,198,223,171,157	0,2103,3906,8925,10307
chr2	131269380	131270736	prostate_carcinoma.92057	0	.	131269380	131270736	0	1	1356	0
chr2	131271733	131272206	B_Cells_Pritchard.2909851	0	.	131271733	131272206	0	1	473	0
chr2	131271980	131272490	brain_AmbionMAQC.42212	0	.	131271980	131272490	0	1	510	0
chr2	131293838	131294238	brain_AmbionMAQC.42214	0	.	131293838	131294238	0	1	400	0
chr2	131303235	131303798	B_Cells_Pritchard.2909975	0	.	131303235	131303798	0	1	563	0
chr2	131303341	131303814	BT474_Burge_Thompson.32745	0	.	131303341	131303814	0	1	473	0
chr2	131309007	131310846	H1_polyA+.107321	0	-	131309007	131310846	0	2	1061,494	0,1345
chr2	131309647	131310754	melanoma_Garraway_short_term_cultures.64276	0	.	131309647	131310754	0	1	1107	0
chr2	131309813	131310536	prostate_normal.55344	0	-	131309813	131310536	0	2	255,184	0,539
chr2	131309916	131310774	Rinn_00003404	0	-	131309916	131310774	0	2	152,423	0,435
chr2	131310206	131310846	prostate_carcinoma.92064	0	.	131310206	131310846	0	1	640	0
chr2	132103553	132104795	REMC_LuminalBreast.91394	0	.	132103553	132104795	0	1	1242	0
chr2	132104206	132104759	B_cells_Cheung.179792	0	.	132104206	132104759	0	1	553	0
chr2	132104305	132104758	MCF7_Burge_Thompson.30054	0	.	132104305	132104758	0	1	453	0
chr2	132105043	132105514	MeI_Garraway.16504	0	.	132105043	132105514	0	1	471	0
chr2	132107966	132111221	B_cells_Cheung.179797	0	.	132107966	132111221	0	1	3255	0
chr2	132108030	132110343	BT474_Burge_Thompson.32820	0	+	132108030	132110343	0	2	1395,280	0,2033
chr2	132108125	132108768	MCF7_Burge_Thompson.30056	0	.	132108125	132108768	0	1	643	0
chr2	132108623	132108979	K562.42417	0	.	132108623	132108979	0	1	356	0
chr2	132108822	132110410	MCF7_Burge_Thompson.30057	0	.	132108822	132110410	0	1	1588	0
chr2	132108844	132109730	BT20_Thompson.20842	0	.	132108844	132109730	0	1	886	0
chr2	132119149	132120236	B_cells_Cheung.179808	0	.	132119149	132120236	0	1	1087	0
chr2	132119163	132119871	K562.42422	0	.	132119163	132119871	0	1	708	0
chr2	132119173	132120047	BT474_Burge_Thompson.32828	0	.	132119173	132120047	0	1	874	0
chr2	132119238	132120024	B_Cells_Pritchard.2911487	0	.	132119238	132120024	0	1	786	0
chr2	132119263	132119919	testes_Raymond.153175	0	.	132119263	132119919	0	1	656	0
chr2	132120701	132121025	B_Cells_Pritchard.2911493	0	.	132120701	132121025	0	1	324	0
chr2	132120826	132121155	BT474_Burge_Thompson.32829	0	.	132120826	132121155	0	1	329	0
chr2	132131897	132132239	B_cells_Cheung.179821	0	.	132131897	132132239	0	1	342	0
chr2	132132134	132132861	B_Cells_Pritchard.2911545	0	.	132132134	132132861	0	1	727	0
chr2	132149695	132150023	B_Cells_Pritchard.2911603	0	.	132149695	132150023	0	1	328	0
chr2	132154221	132154907	B_Cells_Pritchard.2911623	0	.	132154221	132154907	0	1	686	0
chr2	132303843	132306074	ENST00000437330	0	-	132303843	132306074	0	3	395,84,83	0,471,2148
chr2	132438773	132453916	ENST00000419362	0	-	132438773	132453916	0	3	2042,75,92	0,2585,15051
chr2	132438773	132453917	HIT000043688	0	-	132438773	132453917	0	3	2042,75,93	0,2585,15051
chr2	132507457	132509063	H1_polyA+.107460	0	.	132507457	132509063	0	1	1606	0
chr2	132512149	132512827	Rinn_00004897	0	+	132512149	132512827	0	2	520,22	0,656
chr2	132733321	132733847	BT20_Thompson.20863	0	.	132733321	132733847	0	1	526	0
chr2	132733569	132733915	B_cells_Cheung.180710	0	.	132733569	132733915	0	1	346	0
chr2	132735585	132735930	REMC_LuminalBreast.91412	0	.	132735585	132735930	0	1	345	0
chr2	132735585	132735930	REMC_BreastStem.46308	0	.	132735585	132735930	0	1	345	0
chr2	132735585	132736256	REMC_MyoepithelialBreast.84772	0	.	132735585	132736256	0	1	671	0
chr2	132735585	132735930	HeLa_polyA+_Chen.33682	0	.	132735585	132735930	0	1	345	0
chr2	132740662	132742182	REMC_MyoepithelialBreast.84775	0	.	132740662	132742182	0	1	1520	0
chr2	132740816	132741368	melanoma_Garraway_short_term_cultures.64348	0	.	132740816	132741368	0	1	552	0
chr2	132742565	132744010	REMC_MyoepithelialBreast.84776	0	.	132742565	132744010	0	1	1445	0
chr2	132743149	132743766	K562.42548	0	.	132743149	132743766	0	1	617	0
chr2	132743149	132744014	melanoma_Garraway_short_term_cultures.64350	0	.	132743149	132744014	0	1	865	0
chr2	132743166	132743695	BT20_Thompson.20874	0	.	132743166	132743695	0	1	529	0
chr2	132743166	132743795	B_cells_Cheung.180693	0	.	132743166	132743795	0	1	629	0
chr2	132743440	132743998	H1_rRNA-depleted_UCSD_REMC.80619	0	.	132743440	132743998	0	1	558	0
chr2	132744262	132745892	REMC_MyoepithelialBreast.84777	0	.	132744262	132745892	0	1	1630	0
chr2	132744638	132744947	MeWo_Garraway.34410	0	.	132744638	132744947	0	1	309	0
chr2	132744647	132746447	melanoma_Garraway_short_term_cultures.64352	0	.	132744647	132746447	0	1	1800	0
chr2	132744817	132745123	B_cells_Cheung.180695	0	.	132744817	132745123	0	1	306	0
chr2	132744850	132745883	B_Cells_Pritchard.2954873	0	-	132744850	132745883	0	2	218,679	0,354
chr2	132745349	132745956	B_cells_Cheung.180696	0	.	132745349	132745956	0	1	607	0
chr2	132745397	132745892	MeI_Garraway.16510	0	.	132745397	132745892	0	1	495	0
chr2	132745402	132745894	BT20_Thompson.20878	0	.	132745402	132745894	0	1	492	0
chr2	132745404	132745894	BT474_Burge_Thompson.32888	0	.	132745404	132745894	0	1	490	0
chr2	132746110	132751554	B_Cells_Pritchard.2954877	0	-	132746110	132751554	0	4	297,97,154,662	0,1291,1569,4782
chr2	132749819	132751617	B_cells_Cheung.180702	0	.	132749819	132751617	0	2	924,723	0,1075
chr2	132750680	132751399	H1_polyA+.108424	0	.	132750680	132751399	0	1	719	0
chr2	132750683	132751552	MeWo_Garraway.34414	0	-	132750683	132751552	0	2	87,480	0,389
chr2	132750816	132751393	BT474_Burge_Thompson.32892	0	.	132750816	132751393	0	1	577	0
chr2	132750875	132751552	MeWo_Garraway.34413	0	.	132750875	132751552	0	1	677	0
chr2	132751015	132751408	H9_polyA+.42487	0	.	132751015	132751408	0	1	393	0
chr2	132754511	132754878	ZR751_Thompson.22707	0	.	132754511	132754878	0	1	367	0
chr2	132754569	132754957	MCF7_Burge_Thompson.30159	0	.	132754569	132754957	0	1	388	0
chr2	132759836	132768420	Rinn_00003407	0	-	132759836	132768420	0	3	99,165,61	0,3107,8523
chr2	132760374	132760877	melanoma_Garraway_short_term_cultures.64361	0	.	132760374	132760877	0	1	503	0
chr2	132761423	132761755	K562.42449	0	.	132761423	132761755	0	1	332	0
chr2	132761446	132761756	melanoma_Garraway_short_term_cultures.64363	0	.	132761446	132761756	0	1	310	0
chr2	132761918	132762228	melanoma_Garraway_short_term_cultures.64364	0	.	132761918	132762228	0	1	310	0
chr2	132805679	132806813	HIT000386051	0	-	132805679	132806813	0	1	1134	0
chr2	132805782	132806795	XR_078939	0	-	132805782	132806795	0	1	1013	0
chr2	132819709	132821430	K562.42452	0	.	132819709	132821430	0	1	1721	0
chr2	132819710	132821364	HepG2_Caltech_ENCODE.35438	0	.	132819710	132821364	0	1	1654	0
chr2	132820621	132821398	melanoma_Garraway_short_term_cultures.64370	0	.	132820621	132821398	0	1	777	0
chr2	132820718	132821386	MIP101.64021	0	.	132820718	132821386	0	1	668	0
chr2	132820722	132821364	REMC_LuminalBreast.91421	0	.	132820722	132821364	0	1	642	0
chr2	132821523	132821894	prostate_carcinoma.92163	0	.	132821523	132821894	0	1	371	0
chr2	132821524	132821884	A549_Myers.81570	0	.	132821524	132821884	0	1	360	0
chr2	134284492	134284836	BT474_Burge_Thompson.32853	0	.	134284492	134284836	0	1	344	0
chr2	134284542	134285298	B_Cells_Pritchard.2916871	0	.	134284542	134285298	0	1	756	0
chr2	134285926	134286480	B_Cells_Pritchard.2916875	0	.	134285926	134286480	0	1	554	0
chr2	134289558	134290137	A549_Myers.81629	0	.	134289558	134290137	0	1	579	0
chr2	134923321	134928653	A549_Myers.81640	0	-	134923321	134928653	0	2	691,1325	0,4007
chr2	134924050	134925415	IMR90_UCSD_REMC.46043	0	-	134924050	134925415	0	1	1365	0
chr2	134928018	134928631	kidney_Gilad.78530	0	.	134928018	134928631	0	1	613	0
chr2	136461350	136462112	prostate_carcinoma.92324	0	.	136461350	136462112	0	1	762	0
chr2	136462282	136478538	B_Cells_Pritchard.2922635	0	+	136462282	136478538	0	10	163,655,1805,1670,862,844,9,135,1151,1008	0,313,2627,7330,9009,10186,11311,11991,12196,15248
chr2	136463992	136466723	B_cells_Cheung.180544	0	.	136463992	136466723	0	1	2731	0
chr2	136464161	136465651	HepG2_Caltech_ENCODE.35521	0	.	136464161	136465651	0	1	1490	0
chr2	136472469	136475645	B_cells_Cheung.180551	0	+	136472469	136475645	0	2	409,1167	0,2009
chr2	136473540	136475639	prostate_carcinoma.92325	0	.	136473540	136475639	0	1	2099	0
chr2	136473875	136474725	CD4_Plagnol_resting.59657	0	.	136473875	136474725	0	1	850	0
chr2	136474283	136475622	MIP101.64244	0	.	136474283	136475622	0	1	1339	0
chr2	136474499	136475473	prostate_normal.55494	0	.	136474499	136475473	0	1	974	0
chr2	136474522	136474847	liver_polyA+.121743	0	.	136474522	136474847	0	1	325	0
chr2	136474561	136475629	melanoma_Garraway_short_term_cultures.64559	0	.	136474561	136475629	0	1	1068	0
chr2	136478701	136479648	HepG2_Caltech_ENCODE.35526	0	.	136478701	136479648	0	1	947	0
chr2	136478778	136479357	B_cells_Cheung.180552	0	.	136478778	136479357	0	1	579	0
chr2	136478782	136481500	H1_polyA+.107662	0	.	136478782	136481500	0	1	2718	0
chr2	136478783	136480488	B_Cells_Pritchard.2922659	0	.	136478783	136480488	0	1	1705	0
chr2	136478789	136480982	prostate_carcinoma.92327	0	.	136478789	136480982	0	1	2193	0
chr2	136478796	136479416	MIP101.64246	0	.	136478796	136479416	0	1	620	0
chr2	136483487	136484673	REMC_LuminalBreast.91957	0	.	136483487	136484673	0	1	1186	0
chr2	136483567	136491373	B_Cells_Pritchard.2922675	0	-	136483567	136491373	0	5	24,541,189,1528,1964	0,289,987,2613,5842
chr2	136486483	136487552	REMC_LuminalBreast.91958	0	.	136486483	136487552	0	1	1069	0
chr2	136567518	136580272	pHIT000004979	0	-	136567518	136580272	0	3	153,127,29	0,2514,12725
chr2	136598263	136600292	CD4_Snyder.67930	0	.	136598263	136600292	0	1	2029	0
chr2	136605515	136611455	CD4_Snyder.67928	0	.	136605515	136611455	0	1	5940	0
chr2	136611657	136612035	CD4_Snyder.67914	0	.	136611657	136612035	0	1	378	0
chr2	136678719	136679198	B_Cells_Pritchard.2923249	0	+	136678719	136679198	0	1	479	0
chr2	136704792	136707285	HIT000289694	0	+	136704792	136707285	0	1	2493	0
chr2	136705542	136706200	CD4_Plagnol_activated.61365	0	.	136705542	136706200	0	1	658	0
chr2	136759998	136760388	B_cells_Cheung.180567	0	.	136759998	136760388	0	1	390	0
chr2	136779229	136779605	B_Cells_Pritchard.2923559	0	.	136779229	136779605	0	1	376	0
chr2	138231458	138232629	B_Cells_Pritchard.2926501	0	.	138231458	138232629	0	1	1171	0
chr2	138272940	138274639	B_cells_Cheung.180603	0	.	138272940	138274639	0	1	1699	0
chr2	138273200	138274501	B_Cells_Pritchard.2926643	0	.	138273200	138274501	0	1	1301	0
chr2	138415551	138416940	HepG2_Caltech_ENCODE.35510	0	.	138415551	138416940	0	1	1389	0
chr2	138493240	138519642	pHIT000074027	0	+	138493240	138519642	0	4	21,79,113,99	0,16200,17493,26303
chr2	138540729	138541330	ZR751_Thompson.22749	0	.	138540729	138541330	0	1	601	0
chr2	138542698	138546955	B_Cells_Pritchard.2927237	0	+	138542698	138546955	0	3	389,756,1500	0,1375,2757
chr2	138543942	138545306	HepG2_Caltech_ENCODE.35534	0	.	138543942	138545306	0	1	1364	0
chr2	138543945	138544963	REMC_LuminalBreast.91636	0	.	138543945	138544963	0	1	1018	0
chr2	138544146	138544838	H1_polyA+.107634	0	.	138544146	138544838	0	1	692	0
chr2	138544271	138545041	B_cells_Cheung.180631	0	.	138544271	138545041	0	1	770	0
chr2	138544482	138545363	REMC_MyoepithelialBreast.84898	0	.	138544482	138545363	0	1	881	0
chr2	138545199	138546054	H1_polyA+.107635	0	.	138545199	138546054	0	1	855	0
chr2	138545551	138686927	REMC_LuminalBreast.91647	0	-	138545551	138686927	0	5	7573,202,102,95,131	0,80954,82293,84156,141245
chr2	138552174	138552710	B_Cells_Pritchard.2927269	0	.	138552174	138552710	0	1	536	0
chr2	138555322	138556472	B_cells_Cheung.180643	0	.	138555322	138556472	0	1	1150	0
chr2	138555569	138556454	B_Cells_Pritchard.2927283	0	.	138555569	138556454	0	1	885	0
chr2	138561962	138562700	B_Cells_Pritchard.2927311	0	.	138561962	138562700	0	1	738	0
chr2	138625826	138626745	B_Cells_Pritchard.2927617	0	.	138625826	138626745	0	1	919	0
chr2	138626267	138626710	B_cells_Cheung.180655	0	.	138626267	138626710	0	1	443	0
chr2	138664410	138664931	B_Cells_Pritchard.2927757	0	.	138664410	138664931	0	1	521	0
chr2	138666393	138667146	B_Cells_Pritchard.2927769	0	.	138666393	138667146	0	1	753	0
chr2	138666500	138667157	B_cells_Cheung.180662	0	.	138666500	138667157	0	1	657	0
chr2	138698966	138699632	B_cells_Cheung.180668	0	.	138698966	138699632	0	1	666	0
chr2	138701916	138702654	B_cells_Cheung.180671	0	.	138701916	138702654	0	1	738	0
chr2	138880024	138883981	B_Cells_Pritchard.2928389	0	.	138880024	138883981	0	1	3957	0
chr2	138881298	138883984	B_cells_Cheung.180966	0	.	138881298	138883984	0	1	2686	0
chr2	138887411	138887904	kidney_Gilad.78744	0	+	138887411	138887904	0	2	359,52	0,441
chr2	138892052	138893659	REMC_LuminalBreast.91661	0	.	138892052	138893659	0	1	1607	0
chr2	138935656	138936045	B_cells_Cheung.180997	0	.	138935656	138936045	0	1	389	0
chr2	138953208	138953931	B_Cells_Pritchard.2928627	0	.	138953208	138953931	0	1	723	0
chr2	138958604	138959626	H1_polyA+.107683	0	.	138958604	138959626	0	1	1022	0
chr2	138959141	138959583	B_Cells_Pritchard.2928647	0	.	138959141	138959583	0	1	442	0
chr2	138959249	138959589	melanoma_Garraway_short_term_cultures.64583	0	.	138959249	138959589	0	1	340	0
chr2	138960262	138961723	B_Cells_Pritchard.2928649	0	.	138960262	138961723	0	1	1461	0
chr2	138964638	138974648	MIP101.64307	0	.	138964638	138974648	0	1	10010	0
chr2	138965149	138972318	H1_polyA+.107686	0	.	138965149	138972318	0	1	7169	0
chr2	138966775	138969240	HepG2_Caltech_ENCODE.35545	0	.	138966775	138969240	0	1	2465	0
chr2	138967674	138969401	REMC_LuminalBreast.91677	0	.	138967674	138969401	0	1	1727	0
chr2	138968300	138970969	K562.42659	0	.	138968300	138970969	0	1	2669	0
chr2	138968337	138969221	prostate_carcinoma.92396	0	.	138968337	138969221	0	1	884	0
chr2	138968379	138970874	melanoma_Garraway_short_term_cultures.64585	0	.	138968379	138970874	0	1	2495	0
chr2	138968725	138969152	B_cells_Cheung.181030	0	.	138968725	138969152	0	1	427	0
chr2	138969342	138971496	HepG2_Caltech_ENCODE.35546	0	.	138969342	138971496	0	1	2154	0
chr2	138971317	138972968	melanoma_Garraway_short_term_cultures.64586	0	.	138971317	138972968	0	1	1651	0
chr2	138971445	138974586	REMC_LuminalBreast.91679	0	.	138971445	138974586	0	1	3141	0
chr2	138972421	138972893	K562.42661	0	.	138972421	138972893	0	1	472	0
chr2	139053279	139058667	REMC_MyoepithelialBreast.85041	0	.	139053279	139058667	0	1	5388	0
chr2	139056456	139058087	H1_polyA+.107694	0	.	139056456	139058087	0	1	1631	0
chr2	139056668	139058073	REMC_BreastStem.46471	0	.	139056668	139058073	0	1	1405	0
chr2	139057155	139058812	REMC_LuminalBreast.91686	0	.	139057155	139058812	0	1	1657	0
chr2	139061426	139070216	REMC_LuminalBreast.91728	0	.	139061426	139070216	0	1	8790	0
chr2	139061735	139064029	B_Cells_Pritchard.2928863	0	.	139061735	139064029	0	1	2294	0
chr2	139061765	139087291	REMC_MyoepithelialBreast.85044	0	+	139061765	139087291	0	3	7397,496,273	0,16338,25253
chr2	139061854	139062454	CD4_Snyder.67947	0	.	139061854	139062454	0	1	600	0
chr2	139074877	139077105	REMC_MyoepithelialBreast.85050	0	.	139074877	139077105	0	1	2228	0
chr2	139076151	139084040	REMC_LuminalBreast.91732	0	.	139076151	139084040	0	1	7889	0
chr2	139077213	139084003	REMC_MyoepithelialBreast.85045	0	.	139077213	139084003	0	1	6790	0
chr2	139079921	139083195	REMC_BreastStem.46461	0	.	139079921	139083195	0	1	3274	0
chr2	139081867	139082322	B_cells_Cheung.180786	0	.	139081867	139082322	0	1	455	0
chr2	139082023	139082345	B_Cells_Pritchard.2928991	0	.	139082023	139082345	0	1	322	0
chr2	139900556	139904119	K562.42575	0	.	139900556	139904119	0	1	3563	0
chr2	139928253	139929650	K562.42578	0	.	139928253	139929650	0	1	1397	0
chr2	143302297	143303047	B_Cells_Pritchard.2936035	0	.	143302297	143303047	0	1	750	0
chr2	143302697	143303947	B_cells_Cheung.180819	0	.	143302697	143303947	0	1	1250	0
chr2	143303151	143303873	B_Cells_Pritchard.2936037	0	.	143303151	143303873	0	1	722	0
chr2	143304171	143305512	B_Cells_Pritchard.2936039	0	.	143304171	143305512	0	1	1341	0
chr2	143305086	143306340	B_cells_Cheung.180822	0	.	143305086	143306340	0	1	1254	0
chr2	143330632	143335376	B_cells_Cheung.180837	0	.	143330632	143335376	0	1	4744	0
chr2	143339084	143344105	B_cells_Cheung.180847	0	.	143339084	143344105	0	1	5021	0
chr2	143342714	143344326	REMC_LuminalBreast.92199	0	.	143342714	143344326	0	1	1612	0
chr2	143346263	143348348	REMC_LuminalBreast.92202	0	.	143346263	143348348	0	1	2085	0
chr2	143519174	143529999	REMC_LuminalBreast.91910	0	.	143519174	143529999	0	1	10825	0
chr2	143519386	143521916	HeLa_polyA+_Chen.33833	0	.	143519386	143521916	0	1	2530	0
chr2	143520592	143521887	MCF7_Burge_Thompson.30147	0	.	143520592	143521887	0	1	1295	0
chr2	143520686	143521866	HepG2_Caltech_ENCODE.35576	0	.	143520686	143521866	0	1	1180	0
chr2	143520872	143521876	MCF10A_Thompson.20226	0	.	143520872	143521876	0	1	1004	0
chr2	143524203	143524633	HeLa_polyA-_Chen.17746	0	.	143524203	143524633	0	1	430	0
chr2	143524233	143524702	HeLa_polyA+_Chen.33831	0	.	143524233	143524702	0	1	469	0
chr2	143524374	143524674	B_Cells_Pritchard.2936497	0	.	143524374	143524674	0	1	300	0
chr2	143525543	143528149	HeLa_polyA+_Chen.33834	0	.	143525543	143528149	0	1	2606	0
chr2	143525567	143528153	B_Cells_Pritchard.2936501	0	.	143525567	143528153	0	1	2586	0
chr2	143526581	143527069	B_cells_Cheung.180862	0	.	143526581	143527069	0	1	488	0
chr2	143534958	143536376	REMC_LuminalBreast.91913	0	.	143534958	143536376	0	1	1418	0
chr2	144412077	144415005	B_cells_Cheung.180923	0	.	144412077	144415005	0	1	2928	0
chr2	144412112	144415465	REMC_LuminalBreast.91961	0	.	144412112	144415465	0	1	3353	0
chr2	144412112	144415474	brain_AmbionMAQC.42393	0	.	144412112	144415474	0	1	3362	0
chr2	144412113	144415453	H1_polyA+.107772	0	.	144412113	144415453	0	1	3340	0
chr2	144412113	144412705	CD4_Plagnol_resting.59808	0	.	144412113	144412705	0	1	592	0
chr2	144412113	144412658	prostate_normal.55593	0	.	144412113	144412658	0	1	545	0
chr2	144412116	144415462	B_Cells_Pritchard.2939003	0	.	144412116	144415462	0	1	3346	0
chr2	144412116	144412894	CD4_Plagnol_activated.61480	0	.	144412116	144412894	0	1	778	0
chr2	144412116	144415457	prostate_carcinoma.92454	0	.	144412116	144415457	0	1	3341	0
chr2	144412127	144412769	HepG2_Caltech_ENCODE.35584	0	.	144412127	144412769	0	1	642	0
chr2	144814541	144814901	B_cells_Cheung.181103	0	.	144814541	144814901	0	1	360	0
chr2	144823538	144826473	REMC_BreastStem.46521	0	.	144823538	144826473	0	1	2935	0
chr2	144828653	144829581	REMC_BreastStem.46523	0	.	144828653	144829581	0	1	928	0
chr2	144834574	144836087	REMC_BreastStem.46526	0	.	144834574	144836087	0	1	1513	0
chr2	144836181	144837230	REMC_BreastStem.46527	0	.	144836181	144837230	0	1	1049	0
chr2	144837289	144845653	REMC_BreastStem.46529	0	.	144837289	144845653	0	1	8364	0
chr2	145377605	145656540	H1_polyA+.107764	0	+	145377605	145656540	0	4	235,109,400,300	0,37289,268429,278635
chr2	145378711	145379139	H1_rRNA-depleted_UCSD_REMC.80915	0	.	145378711	145379139	0	1	428	0
chr2	145497208	145626539	HIT000221602	0	+	145497208	145626539	0	2	102,1032	0,128299
chr2	145650452	145652955	melanoma_Garraway_short_term_cultures.64675	0	.	145650452	145652955	0	1	2503	0
chr2	145655412	145663324	melanoma_Garraway_short_term_cultures.64663	0	.	145655412	145663324	0	1	7912	0
chr2	145656824	145658442	MeWo_Garraway.34511	0	.	145656824	145658442	0	1	1618	0
chr2	145657783	145658859	MeI_Garraway.16585	0	.	145657783	145658859	0	1	1076	0
chr2	146074943	146077461	Rinn_00003416	0	-	146074943	146077461	0	3	158,65,187	0,2182,2331
chr2	147639026	147639555	B_Cells_Pritchard.2945081	0	.	147639026	147639555	0	1	529	0
chr2	148988862	148989446	CD4_Snyder.68246	0	.	148988862	148989446	0	1	584	0
chr2	148997053	148997935	B_cells_Cheung.181223	0	.	148997053	148997935	0	1	882	0
chr2	148999436	149002769	REMC_MyoepithelialBreast.85063	0	.	148999436	149002769	0	1	3333	0
chr2	149000094	149002477	B_cells_Cheung.181226	0	.	149000094	149002477	0	1	2383	0
chr2	149000115	149004917	B_Cells_Pritchard.2948465	0	.	149000115	149004917	0	1	4802	0
chr2	149002509	149003094	prostate_carcinoma.92534	0	.	149002509	149003094	0	1	585	0
chr2	149002534	149004383	B_cells_Cheung.181227	0	.	149002534	149004383	0	1	1849	0
chr2	149002931	149006226	REMC_MyoepithelialBreast.85062	0	.	149002931	149006226	0	1	3295	0
chr2	149005019	149006614	B_Cells_Pritchard.2948467	0	.	149005019	149006614	0	1	1595	0
chr2	149005096	149006529	B_cells_Cheung.181229	0	.	149005096	149006529	0	1	1433	0
chr2	149005246	149005731	prostate_carcinoma.92535	0	.	149005246	149005731	0	1	485	0
chr2	149006717	149008034	B_Cells_Pritchard.2948469	0	.	149006717	149008034	0	1	1317	0
chr2	149006919	149009569	REMC_MyoepithelialBreast.85064	0	.	149006919	149009569	0	1	2650	0
chr2	149006936	149008816	B_cells_Cheung.181230	0	.	149006936	149008816	0	1	1880	0
chr2	149021890	149022819	REMC_LuminalBreast.92080	0	.	149021890	149022819	0	1	929	0
chr2	149034826	149035414	REMC_LuminalBreast.92082	0	.	149034826	149035414	0	1	588	0
chr2	149263555	149264454	REMC_LuminalBreast.92083	0	.	149263555	149264454	0	1	899	0
chr2	149282357	149282889	REMC_MyoepithelialBreast.85066	0	.	149282357	149282889	0	1	532	0
chr2	149288773	149289969	H1_polyA+.107797	0	.	149288773	149289969	0	1	1196	0
chr2	150172772	150173107	liver_polyA+.122155	0	.	150172772	150173107	0	1	335	0
chr2	150172772	150173107	kidney_Gilad.78953	0	.	150172772	150173107	0	1	335	0
chr2	150229555	150230278	HepG2_Caltech_ENCODE.35646	0	.	150229555	150230278	0	1	723	0
chr2	150240134	150245531	HepG2_Caltech_ENCODE.35652	0	.	150240134	150245531	0	1	5397	0
chr2	150310268	150311138	liver_polyA+.122197	0	.	150310268	150311138	0	1	870	0
chr2	150342759	150343190	liver_polyA+.122200	0	.	150342759	150343190	0	1	431	0
chr2	150373608	150374064	liver_polyA+.122202	0	.	150373608	150374064	0	1	456	0
chr2	150425187	150425777	kidney_Gilad.78983	0	.	150425187	150425777	0	1	590	0
chr2	150441491	150442586	HepG2_Caltech_ENCODE.35672	0	.	150441491	150442586	0	1	1095	0
chr2	150468978	150469809	HepG2_Caltech_ENCODE.35676	0	.	150468978	150469809	0	1	831	0
chr2	150479484	150480574	liver_polyA+.122239	0	.	150479484	150480574	0	1	1090	0
chr2	150479506	150480236	kidney_Gilad.79003	0	.	150479506	150480236	0	1	730	0
chr2	150481402	150482272	liver_polyA+.122241	0	.	150481402	150482272	0	1	870	0
chr2	150508870	150509837	liver_polyA+.122254	0	.	150508870	150509837	0	1	967	0
chr2	150783740	150784309	liver_polyA+.122279	0	.	150783740	150784309	0	1	569	0
chr2	150824382	150828315	liver_polyA+.122301	0	.	150824382	150828315	0	1	3933	0
chr2	150825530	150827211	kidney_Gilad.79050	0	.	150825530	150827211	0	1	1681	0
chr2	150874983	150875544	liver_polyA+.122316	0	.	150874983	150875544	0	1	561	0
chr2	150875033	150875544	kidney_Gilad.79060	0	.	150875033	150875544	0	1	511	0
chr2	150946689	150948757	REMC_MyoepithelialBreast.85141	0	.	150946689	150948757	0	1	2068	0
chr2	150948908	150950443	REMC_MyoepithelialBreast.85142	0	.	150948908	150950443	0	1	1535	0
chr2	151023434	151024725	REMC_LuminalBreast.92126	0	.	151023434	151024725	0	1	1291	0
chr2	151023621	151026063	REMC_MyoepithelialBreast.85155	0	.	151023621	151026063	0	1	2442	0
chr2	151275903	151276769	REMC_MyoepithelialBreast.85167	0	.	151275903	151276769	0	1	866	0
chr2	151880267	151880844	BT474_Burge_Thompson.32967	0	.	151880267	151880844	0	1	577	0
chr2	152304388	152305349	REMC_MyoepithelialBreast.85241	0	.	152304388	152305349	0	1	961	0
chr2	152304471	152305900	HepG2_Caltech_ENCODE.35697	0	.	152304471	152305900	0	1	1429	0
chr2	152304490	152305529	prostate_carcinoma.92643	0	.	152304490	152305529	0	1	1039	0
chr2	152304533	152305154	B_Cells_Pritchard.2955587	0	.	152304533	152305154	0	1	621	0
chr2	152304539	152305239	prostate_normal.55683	0	.	152304539	152305239	0	1	700	0
chr2	152304620	152305164	B_cells_Cheung.181495	0	.	152304620	152305164	0	1	544	0
chr2	152304626	152305446	melanoma_Garraway_short_term_cultures.64782	0	.	152304626	152305446	0	1	820	0
chr2	152304667	152305279	K562.42730	0	.	152304667	152305279	0	1	612	0
chr2	152304731	152305328	REMC_LuminalBreast.92245	0	.	152304731	152305328	0	1	597	0
chr2	152304747	152305172	brain_AmbionMAQC.42476	0	.	152304747	152305172	0	1	425	0
chr2	152305541	152306871	REMC_MyoepithelialBreast.85242	0	.	152305541	152306871	0	1	1330	0
chr2	152305938	152306905	prostate_carcinoma.92645	0	.	152305938	152306905	0	1	967	0
chr2	152305955	152306899	B_Cells_Pritchard.2955599	0	.	152305955	152306899	0	1	944	0
chr2	152305966	152307056	HepG2_Caltech_ENCODE.35698	0	.	152305966	152307056	0	1	1090	0
chr2	152306175	152307489	REMC_LuminalBreast.92246	0	.	152306175	152307489	0	1	1314	0
chr2	152307717	152308831	REMC_LuminalBreast.92247	0	.	152307717	152308831	0	1	1114	0
chr2	152325872	152327161	REMC_LuminalBreast.92252	0	.	152325872	152327161	0	1	1289	0
chr2	152325950	152328762	REMC_MyoepithelialBreast.85251	0	.	152325950	152328762	0	1	2812	0
chr2	152326027	152327196	B_Cells_Pritchard.2955643	0	.	152326027	152327196	0	1	1169	0
chr2	152327611	152332822	HepG2_Caltech_ENCODE.35708	0	.	152327611	152332822	0	1	5211	0
chr2	152329085	152330715	REMC_MyoepithelialBreast.85253	0	.	152329085	152330715	0	1	1630	0
chr2	152338802	152343008	REMC_MyoepithelialBreast.85257	0	.	152338802	152343008	0	1	4206	0
chr2	152340596	152343087	H1_polyA+.107918	0	.	152340596	152343087	0	1	2491	0
chr2	152340918	152342922	MIP101.64573	0	.	152340918	152342922	0	1	2004	0
chr2	152341023	152345101	HIT000017161	0	+	152341023	152345101	0	1	4078	0
chr2	152341041	152343217	HepG2_Caltech_ENCODE.35709	0	.	152341041	152343217	0	1	2176	0
chr2	152341041	152342574	B_cells_Cheung.181510	0	.	152341041	152342574	0	1	1533	0
chr2	152341109	152343238	K562.42760	0	.	152341109	152343238	0	1	2129	0
chr2	152341948	152342414	prostate_normal.55694	0	.	152341948	152342414	0	1	466	0
chr2	152341950	152343060	prostate_carcinoma.92650	0	.	152341950	152343060	0	1	1110	0
chr2	152341969	152342797	melanoma_Garraway_short_term_cultures.64784	0	.	152341969	152342797	0	1	828	0
chr2	152342001	152343036	REMC_BreastStem.46575	0	.	152342001	152343036	0	1	1035	0
chr2	152343954	152345120	HepG2_Caltech_ENCODE.35711	0	.	152343954	152345120	0	1	1166	0
chr2	152344718	152345100	BT474_Burge_Thompson.32969	0	.	152344718	152345100	0	1	382	0
chr2	152345508	152351870	REMC_LuminalBreast.92262	0	.	152345508	152351870	0	1	6362	0
chr2	152345519	152350759	H1_polyA+.107920	0	.	152345519	152350759	0	1	5240	0
chr2	152347277	152348900	K562.42763	0	.	152347277	152348900	0	1	1623	0
chr2	152348195	152350735	REMC_MyoepithelialBreast.85260	0	.	152348195	152350735	0	1	2540	0
chr2	152350331	152353131	khalil_1155	0	.	152350331	152353131	0	3	296,323,1103	0,595,1697
chr2	152352263	152353326	prostate_carcinoma.92658	0	.	152352263	152353326	0	1	1063	0
chr2	152352455	152353130	CD4_Plagnol_activated.61587	0	.	152352455	152353130	0	1	675	0
chr2	152352469	152353564	REMC_BreastStem.46579	0	.	152352469	152353564	0	1	1095	0
chr2	152352694	152353377	prostate_normal.55697	0	.	152352694	152353377	0	1	683	0
chr2	152673418	152674187	B_cells_Cheung.181798	0	.	152673418	152674187	0	1	769	0
chr2	153830270	153830833	Rinn_00003906	0	+	153830270	153830833	0	2	57,388	0,175
chr2	154073041	154073380	B_Cells_Pritchard.2959771	0	.	154073041	154073380	0	1	339	0
chr2	154093176	154094185	H1_polyA+.108209	0	.	154093176	154094185	0	1	1009	0
chr2	154095863	154097278	H1_polyA+.108210	0	.	154095863	154097278	0	1	1415	0
chr2	155109636	155110596	B_cells_Cheung.182112	0	.	155109636	155110596	0	1	960	0
chr2	155109837	155110385	B_Cells_Pritchard.2961627	0	.	155109837	155110385	0	1	548	0
chr2	155111564	155111943	B_Cells_Pritchard.2961633	0	.	155111564	155111943	0	1	379	0
chr2	155114865	155115284	B_Cells_Pritchard.2961647	0	.	155114865	155115284	0	1	419	0
chr2	155248321	155248832	B_cells_Cheung.182160	0	.	155248321	155248832	0	1	511	0
chr2	155254215	155257809	MIP101.64618	0	.	155254215	155257809	0	1	3594	0
chr2	155254805	155257005	prostate_carcinoma.92771	0	-	155254805	155257005	0	2	522,1564	0,636
chr2	155254876	155257100	MCF7_Burge_Thompson.30247	0	.	155254876	155257100	0	1	2224	0
chr2	155255182	155256023	prostate_normal.55743	0	.	155255182	155256023	0	1	841	0
chr2	155255423	155256173	liver_polyA+.122507	0	.	155255423	155256173	0	1	750	0
chr2	155255437	155256779	brain_AmbionMAQC.42525	0	.	155255437	155256779	0	1	1342	0
chr2	155261219	155262575	ENST00000443901	0	-	155261219	155262575	0	2	281,151	0,1205
chr2	155597495	155598543	K562.42775	0	.	155597495	155598543	0	1	1048	0
chr2	155790667	155796276	Rinn_00004477	0	-	155790667	155796276	0	2	108,465	0,5144
chr2	155969276	155971149	K562.42784	0	.	155969276	155971149	0	1	1873	0
chr2	156011272	156011616	K562.42785	0	.	156011272	156011616	0	1	344	0
chr2	156364306	156366548	H1_polyA+.108230	0	.	156364306	156366548	0	1	2242	0
chr2	156393852	156394167	H1_rRNA-depleted_UCSD_REMC.81346	0	.	156393852	156394167	0	1	315	0
chr2	156515741	156518727	prostate_carcinoma.92790	0	.	156515741	156518727	0	1	2986	0
chr2	156569183	156572483	H1_polyA+.108239	0	.	156569183	156572483	0	1	3300	0
chr2	156569220	156574428	MIP101.64635	0	.	156569220	156574428	0	1	5208	0
chr2	156570148	156572943	prostate_carcinoma.92802	0	.	156570148	156572943	0	1	2795	0
chr2	156570194	156572405	BT474_Burge_Thompson.33002	0	.	156570194	156572405	0	1	2211	0
chr2	156570204	156572420	prostate_normal.55754	0	.	156570204	156572420	0	1	2216	0
chr2	156570430	156570745	H9_polyA+.42738	0	.	156570430	156570745	0	1	315	0
chr2	156570887	156572487	T47D_Burge_Thompson.27792	0	.	156570887	156572487	0	1	1600	0
chr2	156576705	156586660	MIP101.64637	0	.	156576705	156586660	0	1	9955	0
chr2	156576707	156579936	prostate_carcinoma.92806	0	.	156576707	156579936	0	1	3229	0
chr2	156578020	156579965	K562.42808	0	.	156578020	156579965	0	1	1945	0
chr2	156578332	156580023	NEC_from_H9.70576	0	.	156578332	156580023	0	1	1691	0
chr2	156579302	156579932	H9_polyA+.42749	0	.	156579302	156579932	0	1	630	0
chr2	156584747	156586650	ZR751_Thompson.22822	0	.	156584747	156586650	0	1	1903	0
chr2	156584940	156586651	REMC_LuminalBreast.92410	0	.	156584940	156586651	0	1	1711	0
chr2	156585239	156586666	NEC_from_H9.70580	0	.	156585239	156586666	0	1	1427	0
chr2	156585572	156586381	prostate_normal.55760	0	.	156585572	156586381	0	1	809	0
chr2	156585832	156586512	H9_polyA+.42748	0	.	156585832	156586512	0	1	680	0
chr2	156628794	156629988	H1_polyA+.108248	0	.	156628794	156629988	0	1	1194	0
chr2	156655353	156658603	H1_polyA+.108255	0	.	156655353	156658603	0	1	3250	0
chr2	156671810	156673153	H1_polyA+.108256	0	.	156671810	156673153	0	1	1343	0
chr2	156674813	156675816	H1_polyA+.108257	0	.	156674813	156675816	0	1	1003	0
chr2	156675176	156675790	prostate_carcinoma.92815	0	.	156675176	156675790	0	1	614	0
chr2	156710936	156712797	H1_polyA+.108269	0	.	156710936	156712797	0	1	1861	0
chr2	156711269	156712239	MIP101.64647	0	.	156711269	156712239	0	1	970	0
chr2	156713074	156714215	H1_polyA+.108270	0	.	156713074	156714215	0	1	1141	0
chr2	156714585	156715737	H1_polyA+.108271	0	.	156714585	156715737	0	1	1152	0
chr2	156734689	156736493	H1_polyA+.108277	0	.	156734689	156736493	0	1	1804	0
chr2	156737047	156738059	H1_polyA+.108278	0	.	156737047	156738059	0	1	1012	0
chr2	156737222	156738726	MIP101.64654	0	.	156737222	156738726	0	1	1504	0
chr2	156737319	156737693	CD4_Snyder.68512	0	.	156737319	156737693	0	1	374	0
chr2	156742085	156748356	H1_polyA+.108280	0	.	156742085	156748356	0	1	6271	0
chr2	156748476	156750751	H1_polyA+.108281	0	.	156748476	156750751	0	1	2275	0
chr2	156748498	156750283	MIP101.64659	0	.	156748498	156750283	0	1	1785	0
chr2	156748962	156750342	prostate_carcinoma.92825	0	.	156748962	156750342	0	1	1380	0
chr2	156751651	156753248	prostate_carcinoma.92826	0	.	156751651	156753248	0	1	1597	0
chr2	156751808	156754911	H1_polyA+.108282	0	.	156751808	156754911	0	1	3103	0
chr2	156781438	156783417	H1_polyA+.108289	0	.	156781438	156783417	0	1	1979	0
chr2	156789632	156791840	H1_polyA+.108291	0	.	156789632	156791840	0	1	2208	0
chr2	156794174	156795631	H1_polyA+.108293	0	.	156794174	156795631	0	1	1457	0
chr2	156799719	156800296	H1_polyA+.108296	0	.	156799719	156800296	0	1	577	0
chr2	156805646	156807953	H1_polyA+.108301	0	.	156805646	156807953	0	1	2307	0
chr2	156817032	156818355	H1_polyA+.108308	0	.	156817032	156818355	0	1	1323	0
chr2	156885044	156887056	REMC_MyoepithelialBreast.85546	0	.	156885044	156887056	0	1	2012	0
chr2	156907320	156908673	CD4_Snyder.68515	0	.	156907320	156908673	0	1	1353	0
chr2	156914913	156915514	K562.42831	0	.	156914913	156915514	0	1	601	0
chr2	156914962	156915568	B_cells_Cheung.182228	0	.	156914962	156915568	0	1	606	0
chr2	156925528	156932303	REMC_LuminalBreast.92428	0	+	156925528	156932303	0	2	322,745	0,6030
chr2	156925665	156932341	H1_polyA+.108338	0	+	156925665	156932341	0	2	185,783	0,5893
chr2	156964809	156965377	A549_Myers.82035	0	.	156964809	156965377	0	1	568	0
chr2	156964810	156965447	MCF7_Burge_Thompson.30253	0	.	156964810	156965447	0	1	637	0
chr2	157287046	157287555	H1_polyA+.108344	0	.	157287046	157287555	0	1	509	0
chr2	157289249	157289884	H1_polyA+.108347	0	.	157289249	157289884	0	1	635	0
chr2	157289251	157289883	H9_polyA+.42766	0	.	157289251	157289883	0	1	632	0
chr2	157392006	157392465	B_Cells_Pritchard.2965941	0	.	157392006	157392465	0	1	459	0
chr2	157895946	157896624	CD4_Snyder.68542	0	.	157895946	157896624	0	1	678	0
chr2	157906184	157907069	B_Cells_Pritchard.2966899	0	.	157906184	157907069	0	1	885	0
chr2	157906184	157906718	B_cells_Cheung.182338	0	.	157906184	157906718	0	1	534	0
chr2	157907624	157909113	B_Cells_Pritchard.2966903	0	.	157907624	157909113	0	1	1489	0
chr2	157908193	157908752	CD4_Plagnol_resting.59980	0	.	157908193	157908752	0	1	559	0
chr2	157908201	157909411	B_cells_Cheung.182345	0	.	157908201	157909411	0	1	1210	0
chr2	157908230	157908645	CD4_Snyder.68552	0	.	157908230	157908645	0	1	415	0
chr2	157910040	157913613	B_Cells_Pritchard.2966909	0	-	157910040	157913613	0	2	962,1278	0,2295
chr2	157912277	157913684	B_cells_Cheung.182348	0	.	157912277	157913684	0	1	1407	0
chr2	157917802	157918291	B_cells_Cheung.182349	0	.	157917802	157918291	0	1	489	0
chr2	157917839	157918299	B_Cells_Pritchard.2966917	0	.	157917839	157918299	0	1	460	0
chr2	157919659	157924961	CD4_Snyder.68567	0	.	157919659	157924961	0	1	5302	0
chr2	157926784	157927165	CD4_Snyder.68568	0	.	157926784	157927165	0	1	381	0
chr2	157926795	157927173	B_cells_Cheung.182360	0	.	157926795	157927173	0	1	378	0
chr2	157926800	157927178	B_Cells_Pritchard.2966941	0	.	157926800	157927178	0	1	378	0
chr2	157927318	157933308	CD4_Snyder.68572	0	.	157927318	157933308	0	1	5990	0
chr2	157928114	157930041	B_cells_Cheung.182362	0	.	157928114	157930041	0	1	1927	0
chr2	157928596	157930376	B_Cells_Pritchard.2966949	0	.	157928596	157930376	0	1	1780	0
chr2	157945255	157947441	CD4_Snyder.68573	0	.	157945255	157947441	0	1	2186	0
chr2	157947284	157947667	B_cells_Cheung.182372	0	.	157947284	157947667	0	1	383	0
chr2	157954806	157957509	B_cells_Cheung.182378	0	.	157954806	157957509	0	1	2703	0
chr2	157955648	157962049	CD4_Snyder.68591	0	.	157955648	157962049	0	1	6401	0
chr2	157955741	157957510	B_Cells_Pritchard.2967027	0	.	157955741	157957510	0	1	1769	0
chr2	157957654	157962125	CD4_Plagnol_activated.61692	0	.	157957654	157962125	0	1	4471	0
chr2	157957714	157965221	B_Cells_Pritchard.2972969	0	-	157957714	157965221	0	3	4420,327,242	0,5474,7265
chr2	157957714	157965221	B_Cells_Pritchard.2972967	0	+	157957714	157965221	0	3	2447,32,97	0,4407,7410
chr2	157958010	157962149	B_cells_Cheung.182389	0	.	157958010	157962149	0	1	4139	0
chr2	157958559	157962051	CD4_Plagnol_resting.59985	0	.	157958559	157962051	0	1	3492	0
chr2	157965674	157970308	B_Cells_Pritchard.2972979	0	-	157965674	157970308	0	5	324,228,79,9,86	0,1987,2273,2352,4548
chr2	158232117	158233835	REMC_LuminalBreast.92472	0	.	158232117	158233835	0	1	1718	0
chr2	158242751	158243993	REMC_LuminalBreast.92478	0	.	158242751	158243993	0	1	1242	0
chr2	158260626	158261932	REMC_LuminalBreast.92484	0	.	158260626	158261932	0	1	1306	0
chr2	158262070	158263752	REMC_LuminalBreast.92485	0	.	158262070	158263752	0	1	1682	0
chr2	158268035	158269393	REMC_BreastStem.46624	0	.	158268035	158269393	0	1	1358	0
chr2	158287297	158295353	REMC_LuminalBreast.92524	0	-	158287297	158295353	0	2	3615,2432	0,5624
chr2	158287297	158290960	REMC_LuminalBreast.92522	0	.	158287297	158290960	0	1	3663	0
chr2	158288523	158289402	REMC_MyoepithelialBreast.85600	0	.	158288523	158289402	0	1	879	0
chr2	158535260	158536932	REMC_LuminalBreast.92496	0	.	158535260	158536932	0	1	1672	0
chr2	159275556	159277334	REMC_LuminalBreast.92629	0	.	159275556	159277334	0	1	1778	0
chr2	159286054	159287279	REMC_LuminalBreast.92633	0	.	159286054	159287279	0	1	1225	0
chr2	159301277	159304560	HIT000048275	0	-	159301277	159304560	0	1	3283	0
chr2	159875597	159877020	REMC_LuminalBreast.92646	0	.	159875597	159877020	0	1	1423	0
chr2	160471125	160474963	B_Cells_Pritchard.2973073	0	.	160471125	160474963	0	1	3838	0
chr2	160473733	160476562	REMC_LuminalBreast.94131	0	.	160473733	160476562	0	1	2829	0
chr2	160489551	160493313	prostate_carcinoma.93060	0	.	160489551	160493313	0	1	3762	0
chr2	160637652	160640619	REMC_LuminalBreast.92775	0	.	160637652	160640619	0	1	2967	0
chr2	160640696	160644446	REMC_LuminalBreast.92776	0	.	160640696	160644446	0	1	3750	0
chr2	160643071	160646673	REMC_MyoepithelialBreast.86031	0	.	160643071	160646673	0	1	3602	0
chr2	160645386	160646845	REMC_LuminalBreast.92778	0	.	160645386	160646845	0	1	1459	0
chr2	160647140	160650435	REMC_MyoepithelialBreast.86032	0	.	160647140	160650435	0	1	3295	0
chr2	160648309	160650941	REMC_LuminalBreast.92780	0	.	160648309	160650941	0	1	2632	0
chr2	160651782	160656959	REMC_LuminalBreast.92782	0	.	160651782	160656959	0	1	5177	0
chr2	160653011	160656966	REMC_MyoepithelialBreast.86035	0	.	160653011	160656966	0	1	3955	0
chr2	160662260	160663705	REMC_MyoepithelialBreast.86038	0	.	160662260	160663705	0	1	1445	0
chr2	160662450	160663739	REMC_LuminalBreast.92942	0	.	160662450	160663739	0	1	1289	0
chr2	161183032	161184709	MIP101.64920	0	.	161183032	161184709	0	1	1677	0
chr2	161212565	161213187	MIP101.64925	0	.	161212565	161213187	0	1	622	0
chr2	161212882	161213250	prostate_normal.55942	0	.	161212882	161213250	0	1	368	0
chr2	161213019	161213475	A549_Myers.82250	0	.	161213019	161213475	0	1	456	0
chr2	161341629	161342131	A549_Myers.82252	0	.	161341629	161342131	0	1	502	0
chr2	161664589	161669474	B_cells_Cheung.182875	0	.	161664589	161669474	0	1	4885	0
chr2	161669621	161670913	B_cells_Cheung.182876	0	.	161669621	161670913	0	1	1292	0
chr2	161673543	161681120	B_cells_Cheung.182868	0	.	161673543	161681120	0	1	7577	0
chr2	161698919	161700047	B_cells_Cheung.182887	0	.	161698919	161700047	0	1	1128	0
chr2	161803552	161804258	A549_Myers.82264	0	.	161803552	161804258	0	1	706	0
chr2	161830822	161846633	pHIT000074335	0	-	161830822	161846633	0	2	170,139	0,15672
chr2	163502688	163503151	brain_AmbionMAQC.42677	0	.	163502688	163503151	0	1	463	0
chr2	165188019	165189955	H1_polyA+.108795	0	.	165188019	165189955	0	1	1936	0
chr2	165194862	165198558	REMC_LuminalBreast.93051	0	.	165194862	165198558	0	1	3696	0
chr2	165194862	165201754	REMC_MyoepithelialBreast.86752	0	.	165194862	165201754	0	1	6892	0
chr2	165198637	165201799	REMC_LuminalBreast.93052	0	.	165198637	165201799	0	1	3162	0
chr2	165202108	165204300	REMC_MyoepithelialBreast.86753	0	.	165202108	165204300	0	1	2192	0
chr2	165202466	165204281	REMC_LuminalBreast.93053	0	.	165202466	165204281	0	1	1815	0
chr2	165207780	165209795	prostate_carcinoma.93270	0	.	165207780	165209795	0	1	2015	0
chr2	165212707	165213129	HeLa_polyA+_Chen.34002	0	.	165212707	165213129	0	1	422	0
chr2	166289863	166291590	REMC_MyoepithelialBreast.86209	0	.	166289863	166291590	0	1	1727	0
chr2	166359606	166374766	ENST00000425688	0	+	166359606	166374766	0	3	229,402,148	0,6330,15012
chr2	166371029	166373004	melanoma_Garraway_short_term_cultures.65198	0	.	166371029	166373004	0	1	1975	0
chr2	166371036	166373003	REMC_LuminalBreast.93188	0	.	166371036	166373003	0	1	1967	0
chr2	166371071	166372992	prostate_carcinoma.93389	0	.	166371071	166372992	0	1	1921	0
chr2	166371251	166373002	REMC_BreastStem.46857	0	.	166371251	166373002	0	1	1751	0
chr2	166372313	166373021	MeI_Garraway.16679	0	.	166372313	166373021	0	1	708	0
chr2	166372324	166373005	MeWo_Garraway.34776	0	.	166372324	166373005	0	1	681	0
chr2	166372404	166373025	B_cells_Cheung.183382	0	.	166372404	166373025	0	1	621	0
chr2	166372475	166372959	REMC_MyoepithelialBreast.86287	0	.	166372475	166372959	0	1	484	0
chr2	166373268	166375482	REMC_BreastStem.46858	0	.	166373268	166375482	0	1	2214	0
chr2	166373306	166376788	REMC_MyoepithelialBreast.86288	0	.	166373306	166376788	0	1	3482	0
chr2	166373764	166375920	REMC_LuminalBreast.93185	0	.	166373764	166375920	0	1	2156	0
chr2	166374617	166375121	B_Cells_Pritchard.2984081	0	.	166374617	166375121	0	1	504	0
chr2	166374622	166375146	B_cells_Cheung.183383	0	.	166374622	166375146	0	1	524	0
chr2	166378157	166378956	REMC_MyoepithelialBreast.86290	0	.	166378157	166378956	0	1	799	0
chr2	166378243	166378957	prostate_carcinoma.93392	0	.	166378243	166378957	0	1	714	0
chr2	166378273	166378914	B_cells_Cheung.183386	0	.	166378273	166378914	0	1	641	0
chr2	166378405	166378907	B_Cells_Pritchard.2984101	0	.	166378405	166378907	0	1	502	0
chr2	166379142	166380131	MeWo_Garraway.34782	0	.	166379142	166380131	0	1	989	0
chr2	166379241	166379631	B_Cells_Pritchard.2984097	0	.	166379241	166379631	0	1	390	0
chr2	166397242	166398022	prostate_carcinoma.93393	0	.	166397242	166398022	0	1	780	0
chr2	166397262	166397964	MeWo_Garraway.34784	0	.	166397262	166397964	0	1	702	0
chr2	166397262	166397653	liver_polyA+.123298	0	.	166397262	166397653	0	1	391	0
chr2	166397264	166397644	B_Cells_Pritchard.2984185	0	.	166397264	166397644	0	1	380	0
chr2	166411554	166420461	B_cells_Cheung.183397	0	.	166411554	166420461	0	1	8907	0
chr2	166414788	166415766	H1_polyA+.108863	0	.	166414788	166415766	0	1	978	0
chr2	166415027	166415345	prostate_carcinoma.93400	0	.	166415027	166415345	0	1	318	0
chr2	166415056	166420505	B_Cells_Pritchard.2984261	0	.	166415056	166420505	0	1	5449	0
chr2	166416933	166420584	HepG2_Caltech_ENCODE.35993	0	.	166416933	166420584	0	1	3651	0
chr2	166417680	166419452	liver_polyA+.123308	0	.	166417680	166419452	0	1	1772	0
chr2	166417774	166421338	MIP101.65073	0	.	166417774	166421338	0	1	3564	0
chr2	166418330	166419572	H1_polyA+.108865	0	.	166418330	166419572	0	1	1242	0
chr2	167857534	167858176	A549_Myers.82404	0	.	167857534	167858176	0	1	642	0
chr2	167857844	167858653	H9_polyA-_Chen.13638	0	.	167857844	167858653	0	1	809	0
chr2	167857854	167858383	brain_AmbionMAQC.42756	0	.	167857854	167858383	0	1	529	0
chr2	167858201	167858860	H1_rRNA-depleted_UCSD_REMC.82579	0	.	167858201	167858860	0	1	659	0
chr2	167858768	167949470	pHIT000005082	0	-	167858768	167949470	0	2	296,67	0,90635
chr2	167858768	167949461	pHIT000100300	0	-	167858768	167949461	0	2	296,58	0,90635
chr2	167893357	167894408	H1_polyA+.109316	0	.	167893357	167894408	0	1	1051	0
chr2	167894580	167895523	H1_polyA+.109317	0	.	167894580	167895523	0	1	943	0
chr2	167895852	167896960	H9_polyA-_Chen.13645	0	.	167895852	167896960	0	1	1108	0
chr2	167896024	167896506	H1_rRNA-depleted_UCSD_REMC.82602	0	.	167896024	167896506	0	1	482	0
chr2	167926113	167927548	H1_polyA+.109336	0	.	167926113	167927548	0	1	1435	0
chr2	167927016	167928949	HIT000002640	0	+	167927016	167928949	0	1	1933	0
chr2	167944101	167956703	H1_polyA+.109348	0	.	167944101	167956703	0	1	12602	0
chr2	167944980	167945369	H9_polyA-_Chen.13650	0	.	167944980	167945369	0	1	389	0
chr2	167963106	167963997	H1_polyA+.109355	0	.	167963106	167963997	0	1	891	0
chr2	167970958	167975135	H1_polyA+.109361	0	.	167970958	167975135	0	1	4177	0
chr2	167981195	167981691	H9_polyA-_Chen.13653	0	.	167981195	167981691	0	1	496	0
chr2	167994322	167995667	H1_polyA+.109369	0	.	167994322	167995667	0	1	1345	0
chr2	167994840	167995480	H1_rRNA-depleted_UCSD_REMC.82649	0	.	167994840	167995480	0	1	640	0
chr2	167998345	167999471	H1_polyA+.109372	0	.	167998345	167999471	0	1	1126	0
chr2	168060357	168060784	H1_polyA+.109387	0	.	168060357	168060784	0	1	427	0
chr2	168130077	168130523	H1_polyA+.109411	0	.	168130077	168130523	0	1	446	0
chr2	168158379	168158724	H1_rRNA-depleted_UCSD_REMC.82680	0	.	168158379	168158724	0	1	345	0
chr2	168271071	168272015	melanoma_Garraway_short_term_cultures.65240	0	.	168271071	168272015	0	1	944	0
chr2	168446766	168450680	K562.43196	0	.	168446766	168450680	0	1	3914	0
chr2	168450887	168456949	K562.43176	0	.	168450887	168456949	0	1	6062	0
chr2	168499342	168500267	K562.43177	0	.	168499342	168500267	0	1	925	0
chr2	168506560	168507470	REMC_MyoepithelialBreast.86282	0	.	168506560	168507470	0	1	910	0
chr2	168983672	168984375	BT474_Burge_Thompson.33107	0	.	168983672	168984375	0	1	703	0
chr2	168984875	168985188	B_cells_Cheung.183446	0	.	168984875	168985188	0	1	313	0
chr2	168992284	168993224	ZR751_Thompson.22928	0	.	168992284	168993224	0	1	940	0
chr2	168992621	168993253	MCF10A_Thompson.20387	0	.	168992621	168993253	0	1	632	0
chr2	169348902	169349631	REMC_MyoepithelialBreast.86302	0	.	169348902	169349631	0	1	729	0
chr2	169928469	169928806	A549_Myers.82440	0	.	169928469	169928806	0	1	337	0
chr2	170343281	170343584	B_cells_Cheung.183633	0	.	170343281	170343584	0	1	303	0
chr2	170344016	170344720	B_cells_Cheung.183635	0	.	170344016	170344720	0	1	704	0
chr2	170663299	170664253	B_cells_Cheung.184038	0	.	170663299	170664253	0	1	954	0
chr2	170678631	170679454	B_cells_Cheung.184045	0	.	170678631	170679454	0	1	823	0
chr2	170711622	170712043	B_Cells_Pritchard.2992665	0	.	170711622	170712043	0	1	421	0
chr2	171292831	171305595	pHIT000005110	0	-	171292831	171305595	0	2	185,208	0,12556
chr2	171293101	171295363	K562.43172	0	.	171293101	171295363	0	1	2262	0
chr2	171294068	171295581	HepG2_Caltech_ENCODE.36425	0	.	171294068	171295581	0	1	1513	0
chr2	171478109	171480836	H1_polyA+.109162	0	.	171478109	171480836	0	1	2727	0
chr2	171478603	171479627	B_Cells_Pritchard.3042553	0	+	171478603	171479627	0	1	1024	0
chr2	171478756	171479621	B_cells_Cheung.183943	0	.	171478756	171479621	0	1	865	0
chr2	171479981	171480492	B_cells_Cheung.183944	0	.	171479981	171480492	0	1	511	0
chr2	171479983	171480492	B_Cells_Pritchard.3042557	0	+	171479983	171480492	0	1	509	0
chr2	171480205	171480650	H9_polyA+.43102	0	.	171480205	171480650	0	1	445	0
chr2	171480271	171480772	HepG2_Caltech_ENCODE.36160	0	.	171480271	171480772	0	1	501	0
chr2	171481364	171483451	H1_polyA+.109164	0	.	171481364	171483451	0	1	2087	0
chr2	171481823	171482673	B_cells_Cheung.183945	0	.	171481823	171482673	0	1	850	0
chr2	171487453	171488720	HepG2_Caltech_ENCODE.36162	0	.	171487453	171488720	0	1	1267	0
chr2	171487714	171488151	B_cells_Cheung.183949	0	.	171487714	171488151	0	1	437	0
chr2	171534634	171535262	H1_polyA+.109185	0	.	171534634	171535262	0	1	628	0
chr2	171536295	171536943	B_cells_Cheung.184052	0	.	171536295	171536943	0	1	648	0
chr2	171538249	171538585	A549_Myers.82536	0	.	171538249	171538585	0	1	336	0
chr2	171538640	171538950	A549_Myers.82537	0	.	171538640	171538950	0	1	310	0
chr2	171539655	171542374	REMC_MyoepithelialBreast.86472	0	.	171539655	171542374	0	1	2719	0
chr2	171539969	171551018	B_Cells_Pritchard.2996155	0	+	171539969	171551018	0	4	153,135,95,1360	0,8819,9125,9689
chr2	171540327	171541357	REMC_BreastStem.47193	0	.	171540327	171541357	0	1	1030	0
chr2	171546550	171547768	REMC_LuminalBreast.93377	0	.	171546550	171547768	0	1	1218	0
chr2	171547883	171552567	REMC_BreastStem.47197	0	.	171547883	171552567	0	1	4684	0
chr2	171548103	171550986	melanoma_Garraway_short_term_cultures.65386	0	.	171548103	171550986	0	1	2883	0
chr2	171548651	171550900	prostate_carcinoma.93652	0	.	171548651	171550900	0	1	2249	0
chr2	171548756	171551250	REMC_MyoepithelialBreast.86476	0	.	171548756	171551250	0	1	2494	0
chr2	171549585	171550514	CD4_Plagnol_activated.62033	0	.	171549585	171550514	0	1	929	0
chr2	171807479	171834018	B_Cells_Pritchard.2995841	0	+	171807479	171834018	0	5	27,430,156,144,397	0,19993,25554,25885,26142
chr2	171826384	171827357	B_cells_Cheung.184083	0	.	171826384	171827357	0	1	973	0
chr2	171826411	171827341	REMC_LuminalBreast.93351	0	.	171826411	171827341	0	1	930	0
chr2	171826736	171827334	MIP101.65399	0	.	171826736	171827334	0	1	598	0
chr2	171826818	171827331	melanoma_Garraway_short_term_cultures.65412	0	.	171826818	171827331	0	1	513	0
chr2	171828142	171828736	B_cells_Cheung.184085	0	.	171828142	171828736	0	1	594	0
chr2	171836346	171837346	REMC_LuminalBreast.93355	0	.	171836346	171837346	0	1	1000	0
chr2	171842004	171842430	B_cells_Cheung.184093	0	.	171842004	171842430	0	1	426	0
chr2	171843989	171845847	REMC_BreastStem.46968	0	.	171843989	171845847	0	1	1858	0
chr2	171849016	171849904	REMC_MyoepithelialBreast.86570	0	.	171849016	171849904	0	1	888	0
chr2	171862192	171863988	HepG2_Caltech_ENCODE.36187	0	.	171862192	171863988	0	1	1796	0
chr2	171863581	171864007	MIP101.65414	0	.	171863581	171864007	0	1	426	0
chr2	171866088	171867591	REMC_LuminalBreast.93358	0	.	171866088	171867591	0	1	1503	0
chr2	171866645	171867496	B_Cells_Pritchard.2996109	0	.	171866645	171867496	0	1	851	0
chr2	171866745	171867449	B_cells_Cheung.184114	0	.	171866745	171867449	0	1	704	0
chr2	171868349	171869646	REMC_LuminalBreast.93359	0	.	171868349	171869646	0	1	1297	0
chr2	171869235	171869699	B_cells_Cheung.184116	0	.	171869235	171869699	0	1	464	0
chr2	171874884	171878067	REMC_LuminalBreast.93362	0	.	171874884	171878067	0	1	3183	0
chr2	171875398	171877919	H1_polyA+.109903	0	.	171875398	171877919	0	1	2521	0
chr2	171875480	171878236	REMC_MyoepithelialBreast.86582	0	.	171875480	171878236	0	1	2756	0
chr2	171875708	171877936	REMC_BreastStem.46972	0	.	171875708	171877936	0	1	2228	0
chr2	171875989	171877897	HepG2_Caltech_ENCODE.36189	0	.	171875989	171877897	0	1	1908	0
chr2	171876020	171878597	Rinn_00003048	0	+	171876020	171878597	0	2	1908,352	0,2225
chr2	171876021	171878597	ENST00000514012	0	+	171876021	171878597	0	2	1907,351	0,2225
chr2	171876643	171877900	HeLa_polyA+_Chen.34094	0	.	171876643	171877900	0	1	1257	0
chr2	171877043	171877414	B_cells_Cheung.184123	0	.	171877043	171877414	0	1	371	0
chr2	171878314	171878762	MDAMB468_Thompson.23451	0	.	171878314	171878762	0	1	448	0
chr2	172059218	172060824	B_cells_Cheung.184178	0	.	172059218	172060824	0	1	1606	0
chr2	172317617	172318157	HepG2_Caltech_ENCODE.36229	0	.	172317617	172318157	0	1	540	0
chr2	172320154	172322994	REMC_LuminalBreast.93448	0	.	172320154	172322994	0	1	2840	0
chr2	172320213	172321525	REMC_MyoepithelialBreast.86615	0	.	172320213	172321525	0	1	1312	0
chr2	172320456	172321107	H1_polyA+.109280	0	.	172320456	172321107	0	1	651	0
chr2	172320752	172321097	REMC_BreastStem.47022	0	.	172320752	172321097	0	1	345	0
chr2	172321632	172331138	REMC_MyoepithelialBreast.86616	0	.	172321632	172331138	0	1	9506	0
chr2	172325315	172331077	H1_polyA+.109283	0	.	172325315	172331077	0	1	5762	0
chr2	172331183	172334990	B_cells_Cheung.184256	0	.	172331183	172334990	0	1	3807	0
chr2	172331210	172333175	B_Cells_Pritchard.2997187	0	-	172331210	172333175	0	2	1326,503	0,1462
chr2	172331222	172335738	H1_polyA+.109284	0	.	172331222	172335738	0	1	4516	0
chr2	172331238	172333177	melanoma_Garraway_short_term_cultures.65458	0	.	172331238	172333177	0	1	1939	0
chr2	172331250	172333272	REMC_MyoepithelialBreast.86617	0	.	172331250	172333272	0	1	2022	0
chr2	172331361	172338967	REMC_BreastStem.47027	0	.	172331361	172338967	0	1	7606	0
chr2	172331434	172332246	CD4_Plagnol_resting.60434	0	.	172331434	172332246	0	1	812	0
chr2	172331453	172332867	CD4_Plagnol_activated.62136	0	.	172331453	172332867	0	1	1414	0
chr2	172331467	172339986	prostate_carcinoma.93796	0	-	172331467	172339986	0	2	1727,8	0,8511
chr2	172331582	172331964	prostate_normal.56252	0	.	172331582	172331964	0	1	382	0
chr2	172333297	172334767	prostate_carcinoma.93797	0	.	172333297	172334767	0	1	1470	0
chr2	172333362	172335137	melanoma_Garraway_short_term_cultures.65459	0	.	172333362	172335137	0	1	1775	0
chr2	172333369	172338878	REMC_MyoepithelialBreast.86618	0	.	172333369	172338878	0	1	5509	0
chr2	172333387	172334875	prostate_normal.56255	0	.	172333387	172334875	0	1	1488	0
chr2	172338237	172340600	HIT000007416	0	-	172338237	172340600	0	2	650,1451	0,912
chr2	172342235	172344349	REMC_MyoepithelialBreast.86621	0	.	172342235	172344349	0	1	2114	0
chr2	172654577	172654883	IMR90_UCSD_REMC.46706	0	-	172654577	172654883	0	1	306	0
chr2	172667585	172668252	A549_Myers.82633	0	.	172667585	172668252	0	1	667	0
chr2	172669910	172670426	B_Cells_Pritchard.2998149	0	.	172669910	172670426	0	1	516	0
chr2	172678426	172679657	prostate_carcinoma.93838	0	.	172678426	172679657	0	1	1231	0
chr2	172737994	172738467	A549_Myers.82642	0	.	172737994	172738467	0	1	473	0
chr2	172745496	172746029	A549_Myers.82641	0	.	172745496	172746029	0	1	533	0
chr2	172801027	172809450	prostate_carcinoma.93760	0	.	172801027	172809450	0	1	8423	0
chr2	172801036	172809450	prostate_normal.56282	0	-	172801036	172809450	0	2	194,2706	0,5708
chr2	172805094	172805495	prostate_normal.56286	0	.	172805094	172805495	0	1	401	0
chr2	172874148	172897114	Rinn_00003942	0	+	172874148	172897114	0	2	42,792	0,22174
chr2	172888259	172896711	Rinn_00003050	0	+	172888259	172896711	0	2	123,389	0,8063
chr2	172888260	172896711	ENST00000445613	0	+	172888260	172896711	0	2	122,388	0,8063
chr2	172895969	172896935	MIP101.65388	0	.	172895969	172896935	0	1	966	0
chr2	172896152	172896797	prostate_carcinoma.93763	0	.	172896152	172896797	0	1	645	0
chr2	172896305	172896663	testes_Burge.50598	0	.	172896305	172896663	0	1	358	0
chr2	172896322	172896829	prostate_normal.56289	0	.	172896322	172896829	0	1	507	0
chr2	172896322	172899181	Rinn_00005278	0	-	172896322	172899181	0	2	788,113	0,2746
chr2	172925079	172999062	pHIT000073199	0	-	172925079	172999062	0	3	240,114,66	0,43706,73917
chr2	173086212	173087557	B_cells_Cheung.186078	0	.	173086212	173087557	0	1	1345	0
chr2	173090209	173091447	B_cells_Cheung.186079	0	.	173090209	173091447	0	1	1238	0
chr2	173092001	173093877	B_cells_Cheung.186080	0	.	173092001	173093877	0	1	1876	0
chr2	173093309	173094681	B_Cells_Pritchard.2999173	0	.	173093309	173094681	0	1	1372	0
chr2	173094019	173096598	B_cells_Cheung.186081	0	.	173094019	173096598	0	1	2579	0
chr2	173094071	173096804	REMC_LuminalBreast.93591	0	.	173094071	173096804	0	1	2733	0
chr2	173097625	173098181	B_cells_Cheung.186083	0	.	173097625	173098181	0	1	556	0
chr2	173097763	173098219	B_Cells_Pritchard.2999191	0	.	173097763	173098219	0	1	456	0
chr2	173106314	173110641	B_cells_Cheung.186090	0	.	173106314	173110641	0	1	4327	0
chr2	173106811	173109307	H1_polyA+.110710	0	.	173106811	173109307	0	1	2496	0
chr2	173109436	173110800	H1_polyA+.110711	0	.	173109436	173110800	0	1	1364	0
chr2	173115484	173116288	B_cells_Cheung.186095	0	.	173115484	173116288	0	1	804	0
chr2	173202180	173202534	prostate_carcinoma.93810	0	.	173202180	173202534	0	1	354	0
chr2	173202194	173202684	HeLa_polyA+_Chen.34136	0	.	173202194	173202684	0	1	490	0
chr2	173204034	173204849	B_cells_Cheung.184324	0	.	173204034	173204849	0	1	815	0
chr2	173216333	173216712	A549_Myers.82662	0	.	173216333	173216712	0	1	379	0
chr2	173255153	173255692	B_cells_Cheung.184355	0	.	173255153	173255692	0	1	539	0
chr2	173285059	173285814	B_cells_Cheung.184361	0	.	173285059	173285814	0	1	755	0
chr2	173287751	173289352	H1_polyA+.109506	0	.	173287751	173289352	0	1	1601	0
chr2	173897626	173898097	B_Cells_Pritchard.3001533	0	.	173897626	173898097	0	1	471	0
chr2	173923301	173923883	H1_polyA+.109658	0	.	173923301	173923883	0	1	582	0
chr2	174038136	174038489	A549_Myers.82686	0	.	174038136	174038489	0	1	353	0
chr2	174135722	174136030	H1_rRNA-depleted_UCSD_REMC.82303	0	.	174135722	174136030	0	1	308	0
chr2	174180507	174181749	MIP101.65512	0	.	174180507	174181749	0	1	1242	0
chr2	174216458	174218336	MIP101.65523	0	.	174216458	174218336	0	1	1878	0
chr2	174265103	174266535	MIP101.65527	0	.	174265103	174266535	0	1	1432	0
chr2	174265669	174266604	MCF7_Burge_Thompson.30475	0	.	174265669	174266604	0	1	935	0
chr2	174265673	174266595	K562.43324	0	.	174265673	174266595	0	1	922	0
chr2	174265692	174271398	K562.43325	0	+	174265692	174271398	0	2	32,705	0,5001
chr2	174265866	174266249	H1_rRNA-depleted_UCSD_REMC.82334	0	.	174265866	174266249	0	1	383	0
chr2	174266585	174272336	H1_polyA+.109612	0	-	174266585	174272336	0	2	9,1635	0,4116
chr2	174270515	174272336	H1_polyA+.109613	0	.	174270515	174272336	0	1	1821	0
chr2	174270588	174272351	MIP101.65525	0	.	174270588	174272351	0	1	1763	0
chr2	174270696	174271136	BT20_Thompson.21168	0	.	174270696	174271136	0	1	440	0
chr2	174270699	174271518	HeLa_polyA+_Chen.34148	0	.	174270699	174271518	0	1	819	0
chr2	174270702	174271994	MCF7_Burge_Thompson.30476	0	.	174270702	174271994	0	1	1292	0
chr2	174270974	174271402	prostate_carcinoma.93847	0	.	174270974	174271402	0	1	428	0
chr2	174304983	174309782	H1_polyA+.109627	0	.	174304983	174309782	0	1	4799	0
chr2	174312438	174317728	H1_polyA+.109629	0	.	174312438	174317728	0	1	5290	0
chr2	174323617	174324612	H1_polyA+.109631	0	.	174323617	174324612	0	1	995	0
chr2	174334535	174335839	H1_polyA+.109632	0	.	174334535	174335839	0	1	1304	0
chr2	174343959	174347161	H1_polyA+.109637	0	.	174343959	174347161	0	1	3202	0
chr2	174345027	174346069	MIP101.65541	0	.	174345027	174346069	0	1	1042	0
chr2	174356912	174358321	H1_polyA+.109640	0	.	174356912	174358321	0	1	1409	0
chr2	174375844	174376826	H1_polyA+.109645	0	.	174375844	174376826	0	1	982	0
chr2	174376162	174376725	MIP101.65548	0	.	174376162	174376725	0	1	563	0
chr2	174377266	174380193	H1_polyA+.109646	0	.	174377266	174380193	0	1	2927	0
chr2	174378848	174380278	MIP101.65549	0	.	174378848	174380278	0	1	1430	0
chr2	174543500	174543933	MIP101.65651	0	.	174543500	174543933	0	1	433	0
chr2	174552697	174553364	B_cells_Cheung.184497	0	.	174552697	174553364	0	1	667	0
chr2	174560576	174563166	HIT000019892	0	-	174560576	174563166	0	1	2590	0
chr2	174585810	174587272	REMC_BreastStem.47080	0	.	174585810	174587272	0	1	1462	0
chr2	174585881	174586360	BT474_Burge_Thompson.33261	0	.	174585881	174586360	0	1	479	0
chr2	174585896	174586368	B_Cells_Pritchard.3003521	0	.	174585896	174586368	0	1	472	0
chr2	174586086	174587528	REMC_LuminalBreast.93496	0	.	174586086	174587528	0	1	1442	0
chr2	174586155	174587745	REMC_MyoepithelialBreast.86774	0	.	174586155	174587745	0	1	1590	0
chr2	174598253	174600188	HIT000262988	0	+	174598253	174600188	0	1	1935	0
chr2	174598389	174600145	HIT000334471	0	+	174598389	174600145	0	1	1756	0
chr2	174598511	174599066	pHIT000005145	0	+	174598511	174599066	0	1	555	0
chr2	174598706	174599673	prostate_carcinoma.93873	0	.	174598706	174599673	0	1	967	0
chr2	174598735	174599287	A549_Myers.82710	0	.	174598735	174599287	0	1	552	0
chr2	174612569	174612901	A549_Myers.82713	0	.	174612569	174612901	0	1	332	0
chr2	174622250	174624691	REMC_LuminalBreast.93499	0	.	174622250	174624691	0	1	2441	0
chr2	174622292	174623658	H1_polyA+.109663	0	.	174622292	174623658	0	1	1366	0
chr2	174622368	174623183	REMC_MyoepithelialBreast.86781	0	.	174622368	174623183	0	1	815	0
chr2	174623244	174629417	REMC_MyoepithelialBreast.86782	0	.	174623244	174629417	0	1	6173	0
chr2	174624612	174625286	HepG2_Caltech_ENCODE.36291	0	.	174624612	174625286	0	1	674	0
chr2	174624743	174626260	REMC_LuminalBreast.93500	0	.	174624743	174626260	0	1	1517	0
chr2	174626339	174628136	REMC_LuminalBreast.93501	0	.	174626339	174628136	0	1	1797	0
chr2	174626416	174627109	A549_Myers.82715	0	.	174626416	174627109	0	1	693	0
chr2	174629904	174637344	REMC_MyoepithelialBreast.86783	0	.	174629904	174637344	0	1	7440	0
chr2	174634427	174636914	REMC_LuminalBreast.93505	0	.	174634427	174636914	0	1	2487	0
chr2	174635339	174636920	REMC_BreastStem.47084	0	.	174635339	174636920	0	1	1581	0
chr2	174636763	174637325	B_cells_Cheung.184499	0	.	174636763	174637325	0	1	562	0
chr2	174637468	174639104	REMC_BreastStem.47087	0	.	174637468	174639104	0	1	1636	0
chr2	174638064	174639453	REMC_LuminalBreast.93506	0	.	174638064	174639453	0	1	1389	0
chr2	174638072	174638656	B_cells_Cheung.184500	0	.	174638072	174638656	0	1	584	0
chr2	174640403	174640921	B_cells_Cheung.184502	0	.	174640403	174640921	0	1	518	0
chr2	174642882	174643951	REMC_BreastStem.47095	0	.	174642882	174643951	0	1	1069	0
chr2	174642887	174643714	melanoma_Garraway_short_term_cultures.65535	0	.	174642887	174643714	0	1	827	0
chr2	174643063	174643878	B_cells_Cheung.184507	0	.	174643063	174643878	0	1	815	0
chr2	174898999	174903617	Rinn_00003051	0	+	174898999	174903617	0	3	1385,381,1360	0,2430,3258
chr2	174900081	174900568	A549_Myers.82739	0	.	174900081	174900568	0	1	487	0
chr2	174901327	174901777	K562.43355	0	.	174901327	174901777	0	1	450	0
chr2	174905391	174906037	A549_Myers.82742	0	.	174905391	174906037	0	1	646	0
chr2	174905569	174906694	Rinn_00004501	0	-	174905569	174906694	0	2	465,165	0,960
chr2	174912989	174913624	A549_Myers.82746	0	.	174912989	174913624	0	1	635	0
chr2	174914994	174915437	A549_Myers.82748	0	.	174914994	174915437	0	1	443	0
chr2	174916605	174917174	B_Cells_Pritchard.3004441	0	.	174916605	174917174	0	1	569	0
chr2	174916809	174917812	REMC_BreastStem.47138	0	.	174916809	174917812	0	1	1003	0
chr2	174916948	174917526	prostate_carcinoma.93891	0	.	174916948	174917526	0	1	578	0
chr2	175107159	175107695	B_Cells_Pritchard.3005039	0	.	175107159	175107695	0	1	536	0
chr2	175107642	175108065	CD4_Plagnol_resting.60518	0	.	175107642	175108065	0	1	423	0
chr2	175109488	175109884	CD4_Plagnol_resting.60816	0	.	175109488	175109884	0	1	396	0
chr2	175118424	175120760	CD4_Plagnol_resting.60820	0	.	175118424	175120760	0	1	2336	0
chr2	175118539	175120518	CD4_Plagnol_activated.62272	0	.	175118539	175120518	0	1	1979	0
chr2	175118607	175120412	prostate_carcinoma.93970	0	.	175118607	175120412	0	1	1805	0
chr2	175118652	175120657	B_Cells_Pritchard.3005121	0	.	175118652	175120657	0	1	2005	0
chr2	175119567	175120241	melanoma_Garraway_short_term_cultures.65587	0	.	175119567	175120241	0	1	674	0
chr2	175123509	175123876	B_Cells_Pritchard.3005143	0	-	175123509	175123876	0	1	367	0
chr2	175123536	175123901	CD4_Plagnol_resting.60824	0	.	175123536	175123901	0	1	365	0
chr2	175269224	175269603	A549_Myers.82763	0	.	175269224	175269603	0	1	379	0
chr2	175302405	175303314	pHIT000005165	0	+	175302405	175303314	0	3	72,147,225	0,246,684
chr2	175302758	175303504	A549_Myers.82765	0	.	175302758	175303504	0	1	746	0
chr2	175304306	175308416	BT20_Thompson.21199	0	.	175304306	175308416	0	1	4110	0
chr2	175316366	175318384	BT20_Thompson.21201	0	.	175316366	175318384	0	1	2018	0
chr2	175341572	175341877	A549_Myers.82767	0	.	175341572	175341877	0	1	305	0
chr2	175345113	175346689	BT20_Thompson.21202	0	.	175345113	175346689	0	1	1576	0
chr2	175345855	175346464	melanoma_Garraway_short_term_cultures.65628	0	.	175345855	175346464	0	1	609	0
chr2	175600142	175601250	REMC_LuminalBreast.93544	0	.	175600142	175601250	0	1	1108	0
chr2	175600508	175601095	B_cells_Cheung.184840	0	.	175600508	175601095	0	1	587	0
chr2	175611813	175614129	B_Cells_Pritchard.3006175	0	.	175611813	175614129	0	1	2316	0
chr2	175611821	175613225	B_cells_Cheung.184843	0	.	175611821	175613225	0	1	1404	0
chr2	175613033	175614563	REMC_LuminalBreast.93550	0	.	175613033	175614563	0	1	1530	0
chr2	175618552	175632927	B_Cells_Pritchard.3006237	0	+	175618552	175632927	0	4	292,133,28,2895	0,9707,11364,11480
chr2	175619334	175620124	REMC_BreastStem.47168	0	.	175619334	175620124	0	1	790	0
chr2	175619375	175620156	melanoma_Garraway_short_term_cultures.65634	0	.	175619375	175620156	0	1	781	0
chr2	175619391	175619740	B_cells_Cheung.184847	0	.	175619391	175619740	0	1	349	0
chr2	175620350	175621574	REMC_LuminalBreast.93554	0	.	175620350	175621574	0	1	1224	0
chr2	175620616	175622001	melanoma_Garraway_short_term_cultures.65635	0	.	175620616	175622001	0	1	1385	0
chr2	175623596	175624771	B_cells_Cheung.184854	0	.	175623596	175624771	0	1	1175	0
chr2	175623608	175626348	B_Cells_Pritchard.3006265	0	+	175623608	175626348	0	2	1021,1555	0,1185
chr2	175629876	175633480	REMC_BreastStem.47175	0	.	175629876	175633480	0	1	3604	0
chr2	175629918	175632940	melanoma_Garraway_short_term_cultures.65642	0	.	175629918	175632940	0	1	3022	0
chr2	175629920	175631852	B_cells_Cheung.184863	0	.	175629920	175631852	0	1	1932	0
chr2	175630470	175633364	REMC_LuminalBreast.93560	0	.	175630470	175633364	0	1	2894	0
chr2	175635738	175636643	B_Cells_Pritchard.3006199	0	.	175635738	175636643	0	1	905	0
chr2	175635800	175637491	REMC_LuminalBreast.93562	0	.	175635800	175637491	0	1	1691	0
chr2	175638473	175640078	H1_polyA+.109780	0	.	175638473	175640078	0	1	1605	0
chr2	175641716	175643050	H1_polyA+.109781	0	.	175641716	175643050	0	1	1334	0
chr2	175641751	175642827	REMC_BreastStem.47178	0	.	175641751	175642827	0	1	1076	0
chr2	176112364	176156047	pHIT000073306	0	+	176112364	176156047	0	5	85,113,149,139,168	0,33477,38278,41365,43515
chr2	176153580	176154552	prostate_carcinoma.93990	0	.	176153580	176154552	0	1	972	0
chr2	176166594	176170689	H1_polyA+.109867	0	-	176166594	176170689	0	2	50,2323	0,1772
chr2	176168215	176169611	MIP101.65652	0	.	176168215	176169611	0	1	1396	0
chr2	176171235	176174248	MIP101.65654	0	.	176171235	176174248	0	1	3013	0
chr2	176171837	176175619	H1_polyA+.109868	0	.	176171837	176175619	0	1	3782	0
chr2	176182122	176184540	MIP101.65657	0	.	176182122	176184540	0	1	2418	0
chr2	176191838	176194777	H1_polyA+.109873	0	.	176191838	176194777	0	1	2939	0
chr2	176191979	176192806	MIP101.65661	0	.	176191979	176192806	0	1	827	0
chr2	176192979	176195991	MIP101.65662	0	.	176192979	176195991	0	1	3012	0
chr2	176193616	176195226	HepG2_Caltech_ENCODE.36345	0	.	176193616	176195226	0	1	1610	0
chr2	176196874	176200167	H1_polyA+.109876	0	.	176196874	176200167	0	1	3293	0
chr2	176196927	176203372	MIP101.65664	0	.	176196927	176203372	0	1	6445	0
chr2	176201633	176202184	H1_polyA+.109877	0	.	176201633	176202184	0	1	551	0
chr2	176202654	176203948	H1_polyA+.109878	0	.	176202654	176203948	0	1	1294	0
chr2	176219217	176221007	H1_polyA+.109884	0	.	176219217	176221007	0	1	1790	0
chr2	176219670	176220588	MIP101.65665	0	.	176219670	176220588	0	1	918	0
chr2	176221845	176223538	H1_polyA+.109886	0	.	176221845	176223538	0	1	1693	0
chr2	176224995	176225405	H1_polyA+.109888	0	.	176224995	176225405	0	1	410	0
chr2	176226901	176229839	H1_polyA+.109890	0	.	176226901	176229839	0	1	2938	0
chr2	176233920	176235702	MIP101.65672	0	.	176233920	176235702	0	1	1782	0
chr2	176244434	176244915	HepG2_Caltech_ENCODE.36366	0	.	176244434	176244915	0	1	481	0
chr2	176430389	176431787	HepG2_Caltech_ENCODE.36337	0	.	176430389	176431787	0	1	1398	0
chr2	176432422	176433986	HepG2_Caltech_ENCODE.36414	0	.	176432422	176433986	0	1	1564	0
chr2	176493785	176495135	B_Cells_Pritchard.3007897	0	.	176493785	176495135	0	1	1350	0
chr2	176577892	176580438	H1_polyA+.109912	0	.	176577892	176580438	0	1	2546	0
chr2	176578402	176580504	melanoma_Garraway_short_term_cultures.65658	0	.	176578402	176580504	0	1	2102	0
chr2	176578404	176580456	B_cells_Cheung.184923	0	.	176578404	176580456	0	1	2052	0
chr2	176578537	176579562	prostate_normal.56415	0	.	176578537	176579562	0	1	1025	0
chr2	176578578	176579694	BT20_Thompson.21213	0	.	176578578	176579694	0	1	1116	0
chr2	176578580	176580197	B_Cells_Pritchard.3008187	0	.	176578580	176580197	0	1	1617	0
chr2	176578608	176579801	brain_AmbionMAQC.43023	0	.	176578608	176579801	0	1	1193	0
chr2	176581793	176583376	B_cells_Cheung.184926	0	.	176581793	176583376	0	1	1583	0
chr2	176583567	176584051	prostate_carcinoma.94002	0	.	176583567	176584051	0	1	484	0
chr2	176658977	176659568	A549_Myers.82814	0	.	176658977	176659568	0	1	591	0
chr2	176660996	176661650	prostate_normal.56615	0	.	176660996	176661650	0	1	654	0
chr2	176661031	176662359	prostate_carcinoma.94186	0	.	176661031	176662359	0	1	1328	0
chr2	176746155	176751090	HIT000098612	0	-	176746155	176751090	0	3	3511,163,406	0,4150,4529
chr2	176746168	176751090	ENST00000416928	0	-	176746168	176751090	0	3	3498,163,406	0,4137,4516
chr2	176747187	176751017	BT20_Thompson.21217	0	-	176747187	176751017	0	3	2479,163,333	0,3118,3497
chr2	176747669	176751095	testes_Burge.50735	0	-	176747669	176751095	0	3	1997,163,411	0,2636,3015
chr2	176748200	176748503	adipose_Burge.36969	0	.	176748200	176748503	0	1	303	0
chr2	176748240	176749010	lymph_node_Burge.47782	0	.	176748240	176749010	0	1	770	0
chr2	176749445	176751099	ENST00000456876	0	-	176749445	176751099	0	2	221,415	0,1239
chr2	176750302	176751022	MCF7_Burge_Thompson.30528	0	-	176750302	176751022	0	2	166,338	0,382
chr2	177164709	177199233	pHIT000100374	0	+	177164709	177199233	0	5	21,115,133,73,40	0,27561,28635,28900,34484
chr2	177203023	177203470	B_cells_Cheung.185006	0	.	177203023	177203470	0	1	447	0
chr2	177256136	177258295	pHIT000100375	0	+	177256136	177258295	0	3	101,52,153	0,1585,2006
chr2	177330100	177332441	H1_polyA+.109976	0	.	177330100	177332441	0	1	2341	0
chr2	177330154	177330937	melanoma_Garraway_short_term_cultures.65697	0	.	177330154	177330937	0	1	783	0
chr2	177338954	177340240	prostate_carcinoma.94077	0	.	177338954	177340240	0	1	1286	0
chr2	177341817	177342788	prostate_carcinoma.94078	0	.	177341817	177342788	0	1	971	0
chr2	177410213	177410582	prostate_carcinoma.94089	0	.	177410213	177410582	0	1	369	0
chr2	177608049	177608912	prostate_carcinoma.94094	0	.	177608049	177608912	0	1	863	0
chr2	177660378	177662011	prostate_carcinoma.94095	0	.	177660378	177662011	0	1	1633	0
chr2	177772052	177775919	REMC_MyoepithelialBreast.87950	0	.	177772052	177775919	0	1	3867	0
chr2	177772158	177776056	REMC_LuminalBreast.94269	0	.	177772158	177776056	0	1	3898	0
chr2	177773144	177774686	B_cells_Cheung.185019	0	.	177773144	177774686	0	1	1542	0
chr2	177773761	177776163	REMC_BreastStem.47730	0	.	177773761	177776163	0	1	2402	0
chr2	177774235	177775906	H1_polyA+.109980	0	.	177774235	177775906	0	1	1671	0
chr2	179089065	179091545	B_cells_Cheung.185280	0	.	179089065	179091545	0	1	2480	0
chr2	179089215	179091945	B_Cells_Pritchard.3013999	0	.	179089215	179091945	0	1	2730	0
chr2	179089827	179090404	CD4_Plagnol_resting.60671	0	.	179089827	179090404	0	1	577	0
chr2	179089845	179091734	REMC_LuminalBreast.93703	0	.	179089845	179091734	0	1	1889	0
chr2	179089872	179090808	CD4_Plagnol_activated.62386	0	.	179089872	179090808	0	1	936	0
chr2	179089897	179095287	REMC_BreastStem.47250	0	.	179089897	179095287	0	1	5390	0
chr2	179091944	179095182	REMC_LuminalBreast.93704	0	.	179091944	179095182	0	1	3238	0
chr2	179651946	179653029	REMC_LuminalBreast.93691	0	.	179651946	179653029	0	1	1083	0
chr2	179653107	179653930	REMC_LuminalBreast.93692	0	.	179653107	179653930	0	1	823	0
chr2	179654657	179660466	REMC_LuminalBreast.93693	0	.	179654657	179660466	0	1	5809	0
chr2	179659424	179660327	REMC_MyoepithelialBreast.87082	0	.	179659424	179660327	0	1	903	0
chr2	179661903	179662309	REMC_LuminalBreast.93695	0	.	179661903	179662309	0	1	406	0
chr2	179665632	179672837	REMC_LuminalBreast.93698	0	.	179665632	179672837	0	1	7205	0
chr2	179666455	179670880	REMC_BreastStem.47274	0	.	179666455	179670880	0	1	4425	0
chr2	179666661	179669711	REMC_MyoepithelialBreast.87083	0	.	179666661	179669711	0	1	3050	0
chr2	179934262	179937215	HepG2_Caltech_ENCODE.36551	0	.	179934262	179937215	0	1	2953	0
chr2	179942570	179944118	HepG2_Caltech_ENCODE.36557	0	.	179942570	179944118	0	1	1548	0
chr2	180000125	180002479	pHIT000005220	0	-	180000125	180002479	0	3	170,73,170	0,1522,2184
chr2	180486804	180487358	B_Cells_Pritchard.3016725	0	.	180486804	180487358	0	1	554	0
chr2	180674815	180675629	prostate_carcinoma.94362	0	.	180674815	180675629	0	1	814	0
chr2	180691591	180693412	prostate_normal.56626	0	.	180691591	180693412	0	1	1821	0
chr2	180931310	180934789	prostate_carcinoma.94323	0	.	180931310	180934789	0	1	3479	0
chr2	180948914	180951227	prostate_carcinoma.94330	0	.	180948914	180951227	0	1	2313	0
chr2	180965214	180965674	prostate_carcinoma.94336	0	.	180965214	180965674	0	1	460	0
chr2	180987587	180991358	prostate_carcinoma.94346	0	.	180987587	180991358	0	1	3771	0
chr2	181001487	181002046	prostate_carcinoma.94353	0	.	181001487	181002046	0	1	559	0
chr2	181046948	181048005	prostate_carcinoma.94369	0	.	181046948	181048005	0	1	1057	0
chr2	181063798	181064745	prostate_carcinoma.94371	0	.	181063798	181064745	0	1	947	0
chr2	181127977	181129607	prostate_carcinoma.94392	0	.	181127977	181129607	0	1	1630	0
chr2	181128386	181129233	prostate_normal.56630	0	.	181128386	181129233	0	1	847	0
chr2	181135282	181135772	prostate_normal.56633	0	.	181135282	181135772	0	1	490	0
chr2	181199789	181200674	prostate_carcinoma.94405	0	.	181199789	181200674	0	1	885	0
chr2	181272322	181273135	prostate_carcinoma.94713	0	.	181272322	181273135	0	1	813	0
chr2	181272755	181273253	A549_Myers.83030	0	.	181272755	181273253	0	1	498	0
chr2	181293385	181296123	prostate_carcinoma.94726	0	+	181293385	181296123	0	2	898,1707	0,1031
chr2	181298957	181302580	prostate_carcinoma.94728	0	.	181298957	181302580	0	1	3623	0
chr2	181298970	181302570	prostate_normal.56666	0	.	181298970	181302570	0	1	3600	0
chr2	181309225	181319237	prostate_carcinoma.94729	0	.	181309225	181319237	0	1	10012	0
chr2	181327884	181335203	prostate_carcinoma.94739	0	.	181327884	181335203	0	1	7319	0
chr2	181329303	181332346	prostate_normal.56648	0	.	181329303	181332346	0	1	3043	0
chr2	181359604	181368103	prostate_carcinoma.94750	0	.	181359604	181368103	0	1	8499	0
chr2	181360748	181377389	prostate_normal.56654	0	-	181360748	181377389	0	2	1842,401	0,16240
chr2	181405786	181406475	prostate_normal.56696	0	.	181405786	181406475	0	1	689	0
chr2	181414062	181423658	prostate_carcinoma.94769	0	.	181414062	181423658	0	1	9596	0
chr2	181416436	181420077	prostate_normal.56701	0	.	181416436	181420077	0	1	3641	0
chr2	181430188	181430502	prostate_carcinoma.94777	0	.	181430188	181430502	0	1	314	0
chr2	181465088	181465901	prostate_normal.56672	0	.	181465088	181465901	0	1	813	0
chr2	181499960	181501105	prostate_carcinoma.94426	0	.	181499960	181501105	0	1	1145	0
chr2	181500466	181501150	prostate_normal.56676	0	.	181500466	181501150	0	1	684	0
chr2	181535283	181536804	prostate_carcinoma.94435	0	.	181535283	181536804	0	1	1521	0
chr2	181664991	181665942	REMC_LuminalBreast.93742	0	.	181664991	181665942	0	1	951	0
chr2	181672139	181673514	REMC_MyoepithelialBreast.87131	0	.	181672139	181673514	0	1	1375	0
chr2	181672297	181673122	REMC_BreastStem.47302	0	.	181672297	181673122	0	1	825	0
chr2	181733774	181734318	B_cells_Cheung.185702	0	.	181733774	181734318	0	1	544	0
chr2	181734065	181734379	CD4_Snyder.70170	0	.	181734065	181734379	0	1	314	0
chr2	181778723	181785489	B_cells_Cheung.185735	0	.	181778723	181785489	0	1	6766	0
chr2	181780923	181782027	B_Cells_Pritchard.3019433	0	.	181780923	181782027	0	1	1104	0
chr2	181780996	181781396	CD4_Snyder.70192	0	.	181780996	181781396	0	1	400	0
chr2	182514213	182515251	REMC_LuminalBreast.93763	0	.	182514213	182515251	0	1	1038	0
chr2	182704594	182705147	brain_AmbionMAQC.43163	0	.	182704594	182705147	0	1	553	0
chr2	183201709	183202372	prostate_carcinoma.94499	0	.	183201709	183202372	0	1	663	0
chr2	183355806	183358250	H1_polyA+.110187	0	.	183355806	183358250	0	1	2444	0
chr2	183355809	183358251	REMC_MyoepithelialBreast.87143	0	.	183355809	183358251	0	1	2442	0
chr2	183369830	183370590	REMC_MyoepithelialBreast.87148	0	.	183369830	183370590	0	1	760	0
chr2	183459735	183462770	REMC_MyoepithelialBreast.87380	0	.	183459735	183462770	0	1	3035	0
chr2	183459912	183461917	REMC_LuminalBreast.93783	0	.	183459912	183461917	0	1	2005	0
chr2	183466036	183471271	REMC_MyoepithelialBreast.87382	0	.	183466036	183471271	0	1	5235	0
chr2	183466420	183468629	REMC_BreastStem.47332	0	.	183466420	183468629	0	1	2209	0
chr2	183466835	183468903	REMC_LuminalBreast.93785	0	.	183466835	183468903	0	1	2068	0
chr2	183473737	183475624	melanoma_Garraway_short_term_cultures.65881	0	.	183473737	183475624	0	1	1887	0
chr2	183474465	183478897	REMC_BreastStem.47335	0	.	183474465	183478897	0	1	4432	0
chr2	183474483	183478860	REMC_LuminalBreast.93789	0	.	183474483	183478860	0	1	4377	0
chr2	183474727	183475247	B_cells_Cheung.185917	0	.	183474727	183475247	0	1	520	0
chr2	183474826	183484436	prostate_carcinoma.94520	0	-	183474826	183484436	0	2	356,1321	0,8289
chr2	183477244	183478872	melanoma_Garraway_short_term_cultures.65883	0	.	183477244	183478872	0	1	1628	0
chr2	183481814	183492650	H1_polyA+.110198	0	-	183481814	183492650	0	2	8857,789	0,10047
chr2	183481814	183492650	H1_polyA+.110197	0	.	183481814	183492650	0	1	10836	0
chr2	183484208	183490076	MIP101.66001	0	.	183484208	183490076	0	1	5868	0
chr2	183488284	183489456	liver_polyA+.124520	0	.	183488284	183489456	0	1	1172	0
chr2	183753347	183765992	REMC_LuminalBreast.93819	0	.	183753347	183765992	0	1	12645	0
chr2	183753402	183762502	REMC_MyoepithelialBreast.87208	0	.	183753402	183762502	0	1	9100	0
chr2	183755491	183763791	H1_polyA+.110253	0	.	183755491	183763791	0	1	8300	0
chr2	183763935	183778524	H1_polyA+.110254	0	.	183763935	183778524	0	1	14589	0
chr2	183764645	183773941	REMC_MyoepithelialBreast.87211	0	.	183764645	183773941	0	1	9296	0
chr2	183766165	183774528	REMC_LuminalBreast.93820	0	.	183766165	183774528	0	1	8363	0
chr2	183770138	183772592	B_cells_Cheung.186021	0	.	183770138	183772592	0	1	2454	0
chr2	183772008	183773052	REMC_BreastStem.47345	0	.	183772008	183773052	0	1	1044	0
chr2	183772139	183772481	MIP101.65920	0	.	183772139	183772481	0	1	342	0
chr2	183772648	183773764	B_cells_Cheung.186022	0	.	183772648	183773764	0	1	1116	0
chr2	183772663	183773203	MIP101.65921	0	.	183772663	183773203	0	1	540	0
chr2	183799981	183801259	REMC_LuminalBreast.93832	0	.	183799981	183801259	0	1	1278	0
chr2	183837547	183838365	B_cells_Cheung.186050	0	.	183837547	183838365	0	1	818	0
chr2	183958637	183959673	REMC_MyoepithelialBreast.87241	0	.	183958637	183959673	0	1	1036	0
chr2	183977337	183977929	B_Cells_Pritchard.3024237	0	.	183977337	183977929	0	1	592	0
chr2	184100828	184102498	REMC_MyoepithelialBreast.87267	0	.	184100828	184102498	0	1	1670	0
chr2	184563428	184563794	B_cells_Cheung.186056	0	.	184563428	184563794	0	1	366	0
chr2	184565599	184566395	B_Cells_Pritchard.3025265	0	.	184565599	184566395	0	1	796	0
chr2	184679302	184680033	B_cells_Cheung.186109	0	.	184679302	184680033	0	1	731	0
chr2	184688180	184688840	B_cells_Cheung.186111	0	.	184688180	184688840	0	1	660	0
chr2	184959997	184960541	B_cells_Cheung.186125	0	.	184959997	184960541	0	1	544	0
chr2	185168218	185171285	prostate_carcinoma.94584	0	-	185168218	185171285	0	2	1130,46	0,3021
chr2	185988205	185989827	H1_polyA+.110273	0	.	185988205	185989827	0	1	1622	0
chr2	186023002	186032498	H1_polyA+.110279	0	.	186023002	186032498	0	1	9496	0
chr2	186024708	186025616	B_cells_Cheung.186132	0	.	186024708	186025616	0	1	908	0
chr2	186026678	186029257	prostate_carcinoma.94592	0	-	186026678	186029257	0	2	658,57	0,2522
chr2	186029294	186029909	H9_polyA+.43502	0	.	186029294	186029909	0	1	615	0
chr2	186045701	186046674	H9_polyA+.43506	0	.	186045701	186046674	0	1	973	0
chr2	186045800	186046952	H9_polyA-_Chen.13750	0	.	186045800	186046952	0	1	1152	0
chr2	186046168	186048934	H1_polyA+.110282	0	.	186046168	186048934	0	1	2766	0
chr2	186062635	186068292	H1_polyA+.110289	0	.	186062635	186068292	0	1	5657	0
chr2	186096051	186096997	H1_polyA+.110297	0	.	186096051	186096997	0	1	946	0
chr2	186096197	186097003	B_cells_Cheung.186164	0	.	186096197	186097003	0	1	806	0
chr2	186097202	186097813	B_cells_Cheung.186165	0	.	186097202	186097813	0	1	611	0
chr2	186097204	186099046	H1_polyA+.110298	0	.	186097204	186099046	0	1	1842	0
chr2	186115404	186117210	H1_polyA+.110305	0	.	186115404	186117210	0	1	1806	0
chr2	186116278	186116765	H1_rRNA-depleted_UCSD_REMC.83091	0	.	186116278	186116765	0	1	487	0
chr2	186131981	186132931	H1_polyA+.110312	0	.	186131981	186132931	0	1	950	0
chr2	186210459	186211575	H1_polyA+.110343	0	.	186210459	186211575	0	1	1116	0
chr2	186496291	186497507	B_cells_Cheung.186260	0	.	186496291	186497507	0	1	1216	0
chr2	186504465	186505762	B_cells_Cheung.186268	0	.	186504465	186505762	0	1	1297	0
chr2	186509755	186517491	B_cells_Cheung.186274	0	.	186509755	186517491	0	1	7736	0
chr2	186510684	186516496	REMC_LuminalBreast.93868	0	.	186510684	186516496	0	1	5812	0
chr2	186513736	186514750	REMC_MyoepithelialBreast.87288	0	.	186513736	186514750	0	1	1014	0
chr2	186513745	186515297	prostate_carcinoma.94607	0	.	186513745	186515297	0	1	1552	0
chr2	186513747	186514273	prostate_normal.56775	0	.	186513747	186514273	0	1	526	0
chr2	186513799	186514732	H1_polyA+.110373	0	.	186513799	186514732	0	1	933	0
chr2	186513871	186514624	melanoma_Garraway_short_term_cultures.65912	0	.	186513871	186514624	0	1	753	0
chr2	186531464	186532634	B_cells_Cheung.186290	0	.	186531464	186532634	0	1	1170	0
chr2	186531481	186534352	REMC_LuminalBreast.93875	0	.	186531481	186534352	0	1	2871	0
chr2	186531540	186534021	HepG2_Caltech_ENCODE.36651	0	.	186531540	186534021	0	1	2481	0
chr2	186531584	186532599	REMC_MyoepithelialBreast.87294	0	.	186531584	186532599	0	1	1015	0
chr2	186534415	186542228	REMC_LuminalBreast.93876	0	.	186534415	186542228	0	1	7813	0
chr2	186535539	186538401	B_Cells_Pritchard.3029631	0	.	186535539	186538401	0	1	2862	0
chr2	186536399	186541720	REMC_MyoepithelialBreast.87296	0	.	186536399	186541720	0	1	5321	0
chr2	186544861	186545879	REMC_LuminalBreast.93879	0	.	186544861	186545879	0	1	1018	0
chr2	186559278	186560799	B_cells_Cheung.186325	0	.	186559278	186560799	0	1	1521	0
chr2	186559991	186560761	B_Cells_Pritchard.3029707	0	.	186559991	186560761	0	1	770	0
chr2	186572501	186575374	H1_polyA+.110382	0	.	186572501	186575374	0	1	2873	0
chr2	186572710	186573421	prostate_carcinoma.94615	0	.	186572710	186573421	0	1	711	0
chr2	186573337	186575366	REMC_LuminalBreast.93890	0	.	186573337	186575366	0	1	2029	0
chr2	186615582	186616603	B_Cells_Pritchard.3029877	0	.	186615582	186616603	0	1	1021	0
chr2	186615957	186616606	B_cells_Cheung.186425	0	.	186615957	186616606	0	1	649	0
chr2	186679957	186681162	H1_polyA+.110409	0	.	186679957	186681162	0	1	1205	0
chr2	186680207	186681304	B_cells_Cheung.186380	0	.	186680207	186681304	0	1	1097	0
chr2	186680306	186681151	B_Cells_Pritchard.3029983	0	.	186680306	186681151	0	1	845	0
chr2	186701379	186704823	H1_polyA+.110421	0	.	186701379	186704823	0	1	3444	0
chr2	186701567	186704843	B_cells_Cheung.186447	0	.	186701567	186704843	0	1	3276	0
chr2	186704909	186707888	B_cells_Cheung.186479	0	.	186704909	186707888	0	1	2979	0
chr2	186705555	186707102	B_Cells_Pritchard.3030161	0	.	186705555	186707102	0	1	1547	0
chr2	186706085	186707723	REMC_LuminalBreast.93919	0	.	186706085	186707723	0	1	1638	0
chr2	186717532	186718092	B_cells_Cheung.186489	0	.	186717532	186718092	0	1	560	0
chr2	186719872	186720179	B_cells_Cheung.186492	0	.	186719872	186720179	0	1	307	0
chr2	186722281	186724725	B_cells_Cheung.186480	0	.	186722281	186724725	0	1	2444	0
chr2	186722518	186724115	H1_polyA+.110428	0	.	186722518	186724115	0	1	1597	0
chr2	186723291	186725256	REMC_LuminalBreast.93920	0	.	186723291	186725256	0	1	1965	0
chr2	186723448	186724322	B_Cells_Pritchard.3030261	0	+	186723448	186724322	0	1	874	0
chr2	186723456	186724127	prostate_carcinoma.94658	0	.	186723456	186724127	0	1	671	0
chr2	186723526	186724275	prostate_normal.56777	0	.	186723526	186724275	0	1	749	0
chr2	186727919	186731161	REMC_BreastStem.47351	0	.	186727919	186731161	0	1	3242	0
chr2	186727951	186730433	H1_polyA+.110430	0	.	186727951	186730433	0	1	2482	0
chr2	186729449	186731986	HepG2_Caltech_ENCODE.36671	0	.	186729449	186731986	0	1	2537	0
chr2	186729832	186730435	B_Cells_Pritchard.3030199	0	.	186729832	186730435	0	1	603	0
chr2	186730798	186734566	H1_polyA+.110431	0	.	186730798	186734566	0	1	3768	0
chr2	186732060	186733067	HepG2_Caltech_ENCODE.36672	0	.	186732060	186733067	0	1	1007	0
chr2	186738763	186740664	H1_polyA+.110434	0	.	186738763	186740664	0	1	1901	0
chr2	186739108	186740307	HepG2_Caltech_ENCODE.36675	0	.	186739108	186740307	0	1	1199	0
chr2	186739274	186740391	B_Cells_Pritchard.3030327	0	.	186739274	186740391	0	1	1117	0
chr2	186745721	186746234	B_cells_Cheung.186656	0	.	186745721	186746234	0	1	513	0
chr2	186751531	186765437	B_Cells_Pritchard.3030425	0	-	186751531	186765437	0	2	4063,1434	0,12472
chr2	186759111	186759712	REMC_MyoepithelialBreast.87331	0	.	186759111	186759712	0	1	601	0
chr2	186759349	186760311	B_cells_Cheung.186468	0	.	186759349	186760311	0	1	962	0
chr2	186760380	186765439	B_cells_Cheung.186469	0	.	186760380	186765439	0	1	5059	0
chr2	186780989	186788068	H1_polyA+.110446	0	.	186780989	186788068	0	1	7079	0
chr2	186782625	186786486	REMC_LuminalBreast.93939	0	.	186782625	186786486	0	1	3861	0
chr2	186784491	186786768	REMC_MyoepithelialBreast.87342	0	.	186784491	186786768	0	1	2277	0
chr2	186802261	186803388	B_cells_Cheung.186501	0	.	186802261	186803388	0	1	1127	0
chr2	186813114	186814532	B_cells_Cheung.186502	0	.	186813114	186814532	0	1	1418	0
chr2	186820802	186822415	MIP101.65989	0	.	186820802	186822415	0	1	1613	0
chr2	186837584	186838104	B_cells_Cheung.186518	0	.	186837584	186838104	0	1	520	0
chr2	186852307	186854406	REMC_MyoepithelialBreast.87352	0	.	186852307	186854406	0	1	2099	0
chr2	186853036	186854663	B_cells_Cheung.186530	0	.	186853036	186854663	0	1	1627	0
chr2	186853051	186855187	H1_polyA+.110455	0	.	186853051	186855187	0	1	2136	0
chr2	186853059	186853719	B_Cells_Pritchard.3030683	0	.	186853059	186853719	0	1	660	0
chr2	186865363	186866212	H1_polyA+.110457	0	.	186865363	186866212	0	1	849	0
chr2	186875321	186875686	B_cells_Cheung.186548	0	.	186875321	186875686	0	1	365	0
chr2	186877058	186877425	B_Cells_Pritchard.3030769	0	.	186877058	186877425	0	1	367	0
chr2	186882463	186883602	B_Cells_Pritchard.3030793	0	.	186882463	186883602	0	1	1139	0
chr2	186916956	186917583	REMC_LuminalBreast.93957	0	.	186916956	186917583	0	1	627	0
chr2	186917472	186918423	B_cells_Cheung.186582	0	.	186917472	186918423	0	1	951	0
chr2	186917656	186918361	H1_polyA+.110472	0	.	186917656	186918361	0	1	705	0
chr2	186917848	186918349	B_Cells_Pritchard.3030911	0	.	186917848	186918349	0	1	501	0
chr2	186925149	186926082	REMC_LuminalBreast.93960	0	.	186925149	186926082	0	1	933	0
chr2	186932363	186933915	REMC_LuminalBreast.93964	0	.	186932363	186933915	0	1	1552	0
chr2	186932871	186934432	B_cells_Cheung.186602	0	.	186932871	186934432	0	1	1561	0
chr2	186932942	186934326	MIP101.65991	0	.	186932942	186934326	0	1	1384	0
chr2	186933117	186933745	K562.43778	0	.	186933117	186933745	0	1	628	0
chr2	186933175	186934418	H1_polyA+.110483	0	.	186933175	186934418	0	1	1243	0
chr2	186976148	186979183	REMC_LuminalBreast.93977	0	.	186976148	186979183	0	1	3035	0
chr2	186976167	186982920	H1_polyA+.110499	0	.	186976167	186982920	0	1	6753	0
chr2	186977562	186981885	B_cells_Cheung.186687	0	.	186977562	186981885	0	1	4323	0
chr2	186977570	186981791	B_Cells_Pritchard.3031177	0	+	186977570	186981791	0	1	4221	0
chr2	186977963	186979080	prostate_carcinoma.94677	0	.	186977963	186979080	0	1	1117	0
chr2	186978446	186980247	REMC_MyoepithelialBreast.87368	0	.	186978446	186980247	0	1	1801	0
chr2	186978671	186979321	liver_polyA+.124595	0	.	186978671	186979321	0	1	650	0
chr2	186983298	186983669	B_cells_Cheung.186690	0	.	186983298	186983669	0	1	371	0
chr2	186983734	186984398	B_cells_Cheung.186691	0	.	186983734	186984398	0	1	664	0
chr2	186983759	186984268	B_Cells_Pritchard.3031039	0	.	186983759	186984268	0	1	509	0
chr2	186984964	186985468	H1_polyA+.110501	0	.	186984964	186985468	0	1	504	0
chr2	186987291	186987833	REMC_LuminalBreast.93982	0	.	186987291	186987833	0	1	542	0
chr2	186990456	186999469	H1_polyA+.110505	0	.	186990456	186999469	0	1	9013	0
chr2	186993040	186993896	B_cells_Cheung.186699	0	.	186993040	186993896	0	1	856	0
chr2	186993215	186993895	B_Cells_Pritchard.3031077	0	.	186993215	186993895	0	1	680	0
chr2	187004242	187012781	B_cells_Cheung.186669	0	.	187004242	187012781	0	1	8539	0
chr2	187004264	187005250	H1_polyA+.110509	0	.	187004264	187005250	0	1	986	0
chr2	187004806	187005197	B_Cells_Pritchard.3031159	0	.	187004806	187005197	0	1	391	0
chr2	187004889	187005287	REMC_LuminalBreast.94182	0	.	187004889	187005287	0	1	398	0
chr2	187005872	187009697	REMC_LuminalBreast.94184	0	.	187005872	187009697	0	1	3825	0
chr2	187005967	187007280	H1_polyA+.110511	0	.	187005967	187007280	0	1	1313	0
chr2	187005972	187006878	B_Cells_Pritchard.3031163	0	.	187005972	187006878	0	1	906	0
chr2	187007416	187008265	H1_polyA+.110512	0	.	187007416	187008265	0	1	849	0
chr2	187016389	187027317	H1_polyA+.110517	0	.	187016389	187027317	0	1	10928	0
chr2	187023236	187025767	B_cells_Cheung.186678	0	.	187023236	187025767	0	1	2531	0
chr2	187023576	187025863	REMC_LuminalBreast.94188	0	.	187023576	187025863	0	1	2287	0
chr2	187086428	187094691	B_Cells_Pritchard.3031351	0	+	187086428	187094691	0	6	1190,1312,657,157,89,365	0,1504,3463,4220,7632,7898
chr2	187087946	187112560	REMC_MyoepithelialBreast.87477	0	.	187087946	187112560	0	1	24614	0
chr2	187087947	187094739	H1_polyA+.110527	0	.	187087947	187094739	0	1	6792	0
chr2	187087959	187110518	REMC_LuminalBreast.94192	0	.	187087959	187110518	0	1	22559	0
chr2	187093019	187094709	B_cells_Cheung.186680	0	.	187093019	187094709	0	1	1690	0
chr2	187093545	187094493	K562.43941	0	.	187093545	187094493	0	1	948	0
chr2	187094033	187094692	CD4_Plagnol_activated.62494	0	.	187094033	187094692	0	1	659	0
chr2	187098946	187101050	B_cells_Cheung.186683	0	.	187098946	187101050	0	1	2104	0
chr2	187099119	187101715	REMC_BreastStem.47388	0	.	187099119	187101715	0	1	2596	0
chr2	187099127	187100393	prostate_carcinoma.94695	0	.	187099127	187100393	0	1	1266	0
chr2	187099193	187101313	melanoma_Garraway_short_term_cultures.65937	0	.	187099193	187101313	0	1	2120	0
chr2	187111179	187112486	REMC_LuminalBreast.94198	0	.	187111179	187112486	0	1	1307	0
chr2	187131850	187133287	REMC_BreastStem.47359	0	.	187131850	187133287	0	1	1437	0
chr2	187156969	187158417	H1_polyA+.110534	0	.	187156969	187158417	0	1	1448	0
chr2	187594749	187597666	melanoma_Garraway_short_term_cultures.65953	0	.	187594749	187597666	0	1	2917	0
chr2	187595497	187596968	prostate_carcinoma.94732	0	.	187595497	187596968	0	1	1471	0
chr2	187595522	187597201	B_Cells_Pritchard.3032667	0	.	187595522	187597201	0	1	1679	0
chr2	187596229	187596841	prostate_normal.56792	0	.	187596229	187596841	0	1	612	0
chr2	187627150	187627820	melanoma_Garraway_short_term_cultures.65958	0	.	187627150	187627820	0	1	670	0
chr2	187627556	187628248	B_Cells_Pritchard.3032749	0	.	187627556	187628248	0	1	692	0
chr2	187627949	187628958	melanoma_Garraway_short_term_cultures.65959	0	.	187627949	187628958	0	1	1009	0
chr2	187709411	187710276	melanoma_Garraway_short_term_cultures.65963	0	.	187709411	187710276	0	1	865	0
chr2	188146033	188147604	HepG2_Caltech_ENCODE.36708	0	.	188146033	188147604	0	1	1571	0
chr2	188210371	188211833	H9_polyA+.43543	0	.	188210371	188211833	0	1	1462	0
chr2	188210373	188215984	H1_polyA+.110567	0	.	188210373	188215984	0	1	5611	0
chr2	188210881	188211345	H1_rRNA-depleted_UCSD_REMC.83220	0	.	188210881	188211345	0	1	464	0
chr2	188222624	188228262	H1_polyA+.110568	0	.	188222624	188228262	0	1	5638	0
chr2	188227169	188228106	H9_polyA+.43554	0	.	188227169	188228106	0	1	937	0
chr2	188234438	188242457	H1_polyA+.110569	0	.	188234438	188242457	0	1	8019	0
chr2	188238675	188241319	H9_polyA+.43561	0	.	188238675	188241319	0	1	2644	0
chr2	188240936	188241347	H9_polyA-_Chen.13771	0	.	188240936	188241347	0	1	411	0
chr2	188247490	188248550	H9_polyA+.43567	0	.	188247490	188248550	0	1	1060	0
chr2	188294529	188295597	H1_polyA+.110585	0	.	188294529	188295597	0	1	1068	0
chr2	188303759	188304081	B_cells_Cheung.186807	0	.	188303759	188304081	0	1	322	0
chr2	188354692	188357400	H1_polyA+.111038	0	.	188354692	188357400	0	1	2708	0
chr2	188361101	188363017	H1_polyA+.111044	0	.	188361101	188363017	0	1	1916	0
chr2	188505730	188507142	H1_polyA+.111081	0	.	188505730	188507142	0	1	1412	0
chr2	188592532	188593460	H1_polyA+.111114	0	.	188592532	188593460	0	1	928	0
chr2	188601011	188602463	H1_polyA+.111120	0	.	188601011	188602463	0	1	1452	0
chr2	188606282	188613595	H1_polyA+.111108	0	-	188606282	188613595	0	2	1128,1364	0,5949
chr2	188609339	188609684	H9_polyA+.43581	0	.	188609339	188609684	0	1	345	0
chr2	188609342	188609739	H1_polyA+.111124	0	.	188609342	188609739	0	1	397	0
chr2	188612060	188613565	H9_polyA+.43579	0	.	188612060	188613565	0	1	1505	0
chr2	188612083	188613595	H1_polyA+.111109	0	.	188612083	188613595	0	1	1512	0
chr2	188612096	188613582	H1_rRNA-depleted_UCSD_REMC.83296	0	.	188612096	188613582	0	1	1486	0
chr2	188612098	188613406	H9_polyA-_Chen.13773	0	.	188612098	188613406	0	1	1308	0
chr2	188612099	188613712	H9_polyA+.43578	0	-	188612099	188613712	0	2	567,763	0,850
chr2	188612253	188612661	NEC_from_H9.71710	0	.	188612253	188612661	0	1	408	0
chr2	188794833	188795601	K562.43811	0	.	188794833	188795601	0	1	768	0
chr2	188805275	188806328	H1_polyA+.110638	0	.	188805275	188806328	0	1	1053	0
chr2	188826877	188829236	H1_polyA+.110648	0	.	188826877	188829236	0	1	2359	0
chr2	188828431	188830882	K562.43888	0	.	188828431	188830882	0	1	2451	0
chr2	188843860	188844218	K562.43894	0	.	188843860	188844218	0	1	358	0
chr2	189169479	189176728	MCF7_Burge_Thompson.30616	0	-	189169479	189176728	0	2	2350,4457	0,2792
chr2	189172110	189176728	MCF7_Burge_Thompson.30618	0	.	189172110	189176728	0	1	4618	0
chr2	189933938	189934502	B_cells_Cheung.186832	0	.	189933938	189934502	0	1	564	0
chr2	189933953	189934372	B_Cells_Pritchard.3037031	0	.	189933953	189934372	0	1	419	0
chr2	189992419	189992903	B_cells_Cheung.186845	0	.	189992419	189992903	0	1	484	0
chr2	190050339	190051245	H9_polyA+.43593	0	.	190050339	190051245	0	1	906	0
chr2	190099905	190113140	pHIT000072772	0	-	190099905	190113140	0	3	255,57,60	0,7575,13175
chr2	190244830	190246078	HepG2_Caltech_ENCODE.36726	0	.	190244830	190246078	0	1	1248	0
chr2	190245416	190246001	MDAMB468_Thompson.23610	0	.	190245416	190246001	0	1	585	0
chr2	190975950	190976476	B_cells_Cheung.187026	0	.	190975950	190976476	0	1	526	0
chr2	190976128	190976443	B_Cells_Pritchard.3039437	0	.	190976128	190976443	0	1	315	0
chr2	191114759	191115228	B_cells_Cheung.187716	0	.	191114759	191115228	0	1	469	0
chr2	191117404	191120288	B_cells_Cheung.187718	0	.	191117404	191120288	0	1	2884	0
chr2	191117656	191118948	B_Cells_Pritchard.3039737	0	.	191117656	191118948	0	1	1292	0
chr2	191127990	191128814	REMC_LuminalBreast.94327	0	.	191127990	191128814	0	1	824	0
chr2	191144589	191144964	B_Cells_Pritchard.3039819	0	.	191144589	191144964	0	1	375	0
chr2	191144610	191145035	B_cells_Cheung.187728	0	.	191144610	191145035	0	1	425	0
chr2	191145848	191147871	H1_polyA+.110784	0	.	191145848	191147871	0	1	2023	0
chr2	191147523	191147865	B_cells_Cheung.187730	0	.	191147523	191147865	0	1	342	0
chr2	191155945	191158940	B_cells_Cheung.187737	0	.	191155945	191158940	0	3	397,946,1335	0,632,1660
chr2	191156048	191157690	MIP101.66231	0	.	191156048	191157690	0	1	1642	0
chr2	191156561	191157574	B_Cells_Pritchard.3039851	0	.	191156561	191157574	0	1	1013	0
chr2	191180730	191181801	MIP101.66240	0	.	191180730	191181801	0	1	1071	0
chr2	191180745	191181948	H1_polyA+.110788	0	.	191180745	191181948	0	1	1203	0
chr2	191181018	191181790	B_Cells_Pritchard.3039943	0	.	191181018	191181790	0	1	772	0
chr2	191187444	191188514	H1_polyA+.110789	0	.	191187444	191188514	0	1	1070	0
chr2	191188945	191189338	B_Cells_Pritchard.3039973	0	+	191188945	191189338	0	1	393	0
chr2	191197389	191199888	MIP101.66242	0	.	191197389	191199888	0	1	2499	0
chr2	191204661	191206412	B_cells_Cheung.187174	0	.	191204661	191206412	0	1	1751	0
chr2	191205754	191206401	REMC_LuminalBreast.94345	0	.	191205754	191206401	0	1	647	0
chr2	191210582	191212048	REMC_MyoepithelialBreast.87565	0	.	191210582	191212048	0	1	1466	0
chr2	191212808	191215360	REMC_MyoepithelialBreast.87567	0	.	191212808	191215360	0	1	2552	0
chr2	191213191	191215203	B_cells_Cheung.187177	0	.	191213191	191215203	0	1	2012	0
chr2	191213224	191214800	H1_polyA+.110793	0	.	191213224	191214800	0	1	1576	0
chr2	191213418	191214365	CD4_Plagnol_resting.60944	0	.	191213418	191214365	0	1	947	0
chr2	191213501	191215143	CD4_Plagnol_activated.62592	0	.	191213501	191215143	0	1	1642	0
chr2	191213798	191215075	MIP101.66245	0	.	191213798	191215075	0	1	1277	0
chr2	191213845	191215901	REMC_LuminalBreast.94349	0	.	191213845	191215901	0	1	2056	0
chr2	191276858	191277349	B_cells_Cheung.187074	0	.	191276858	191277349	0	1	491	0
chr2	191326797	191328092	MDAMB231_Thompson.21301	0	.	191326797	191328092	0	1	1295	0
chr2	191326818	191327741	H1_polyA+.110835	0	.	191326818	191327741	0	1	923	0
chr2	191333091	191333471	K562.43980	0	.	191333091	191333471	0	1	380	0
chr2	191377501	191379581	B_Cells_Pritchard.3040629	0	.	191377501	191379581	0	1	2080	0
chr2	191377574	191379560	BT20_Thompson.21348	0	.	191377574	191379560	0	1	1986	0
chr2	191382203	191382925	HeLa_polyA+_Chen.34440	0	.	191382203	191382925	0	1	722	0
chr2	191382602	191383350	B_Cells_Pritchard.3040643	0	.	191382602	191383350	0	1	748	0
chr2	191382605	191383488	HepG2_Caltech_ENCODE.36788	0	.	191382605	191383488	0	1	883	0
chr2	191384185	191384729	B_Cells_Pritchard.3040649	0	.	191384185	191384729	0	1	544	0
chr2	191385834	191387763	MCF10A_Thompson.20650	0	.	191385834	191387763	0	1	1929	0
chr2	191397203	191397515	B_cells_Cheung.187121	0	.	191397203	191397515	0	1	312	0
chr2	191407747	191408930	B_cells_Cheung.187129	0	.	191407747	191408930	0	1	1183	0
chr2	191419337	191421062	B_Cells_Pritchard.3040739	0	.	191419337	191421062	0	1	1725	0
chr2	191419523	191421015	REMC_MyoepithelialBreast.87612	0	.	191419523	191421015	0	1	1492	0
chr2	191419656	191420188	B_cells_Cheung.187137	0	.	191419656	191420188	0	1	532	0
chr2	191423275	191424407	B_Cells_Pritchard.3040747	0	.	191423275	191424407	0	1	1132	0
chr2	191423278	191423714	B_cells_Cheung.187143	0	.	191423278	191423714	0	1	436	0
chr2	191430342	191431241	B_Cells_Pritchard.3040763	0	.	191430342	191431241	0	1	899	0
chr2	191431737	191445962	B_Cells_Pritchard.3040775	0	+	191431737	191445962	0	3	1070,1502,998	0,11705,13227
chr2	192010808	192012047	REMC_LuminalBreast.94410	0	.	192010808	192012047	0	1	1239	0
chr2	192018036	192025228	REMC_LuminalBreast.94414	0	.	192018036	192025228	0	1	7192	0
chr2	192020438	192021441	REMC_MyoepithelialBreast.87653	0	.	192020438	192021441	0	1	1003	0
chr2	192040146	192042615	REMC_LuminalBreast.94418	0	.	192040146	192042615	0	1	2469	0
chr2	192072982	192073407	A549_Myers.83300	0	.	192072982	192073407	0	1	425	0
chr2	192270739	192272556	melanoma_Garraway_short_term_cultures.66119	0	.	192270739	192272556	0	1	1817	0
chr2	192270742	192297677	REMC_LuminalBreast.96812	0	.	192270742	192297677	0	1	26935	0
chr2	192270768	192281779	REMC_MyoepithelialBreast.87970	0	.	192270768	192281779	0	1	11011	0
chr2	192272325	192272845	CD4_Plagnol_activated.62665	0	.	192272325	192272845	0	1	520	0
chr2	192272325	192272671	B_cells_Cheung.187440	0	.	192272325	192272671	0	1	346	0
chr2	192272393	192272703	B_Cells_Pritchard.3042289	0	.	192272393	192272703	0	1	310	0
chr2	192272959	192277267	B_Cells_Pritchard.3042291	0	.	192272959	192277267	0	1	4308	0
chr2	192273016	192275095	melanoma_Garraway_short_term_cultures.66120	0	.	192273016	192275095	0	1	2079	0
chr2	192273100	192274403	CD4_Plagnol_activated.62666	0	.	192273100	192274403	0	1	1303	0
chr2	192273257	192274962	prostate_carcinoma.94961	0	.	192273257	192274962	0	1	1705	0
chr2	192275795	192276596	melanoma_Garraway_short_term_cultures.66121	0	.	192275795	192276596	0	1	801	0
chr2	192275844	192277113	B_cells_Cheung.187441	0	.	192275844	192277113	0	1	1269	0
chr2	192282514	192283551	CD4_Plagnol_resting.60991	0	.	192282514	192283551	0	1	1037	0
chr2	192282517	192297607	REMC_BreastStem.47550	0	.	192282517	192297607	0	1	15090	0
chr2	192282524	192287374	B_Cells_Pritchard.3042297	0	.	192282524	192287374	0	1	4850	0
chr2	192282539	192283573	CD4_Plagnol_activated.62675	0	.	192282539	192283573	0	1	1034	0
chr2	192282556	192283300	CD4_Snyder.70728	0	.	192282556	192283300	0	1	744	0
chr2	192288736	192289187	CD4_Plagnol_resting.61008	0	.	192288736	192289187	0	1	451	0
chr2	192298663	192306336	REMC_MyoepithelialBreast.87974	0	.	192298663	192306336	0	1	7673	0
chr2	192302933	192304977	REMC_BreastStem.47554	0	.	192302933	192304977	0	1	2044	0
chr2	192307667	192308548	REMC_LuminalBreast.96813	0	.	192307667	192308548	0	1	881	0
chr2	192311833	192313399	B_Cells_Pritchard.3042363	0	.	192311833	192313399	0	1	1566	0
chr2	192316679	192323236	REMC_MyoepithelialBreast.87976	0	.	192316679	192323236	0	1	6557	0
chr2	192322816	192324100	REMC_BreastStem.47512	0	.	192322816	192324100	0	1	1284	0
chr2	192331323	192333085	REMC_MyoepithelialBreast.87673	0	.	192331323	192333085	0	1	1762	0
chr2	192331387	192332108	REMC_LuminalBreast.94450	0	.	192331387	192332108	0	1	721	0
chr2	192345132	192346749	REMC_MyoepithelialBreast.87676	0	.	192345132	192346749	0	1	1617	0
chr2	192346919	192348148	REMC_MyoepithelialBreast.87677	0	.	192346919	192348148	0	1	1229	0
chr2	192351848	192396044	REMC_MyoepithelialBreast.87682	0	+	192351848	192396044	0	6	752,149,162,121,97,3113	0,6463,13457,32643,35465,41083
chr2	192436352	192437652	K562.44048	0	.	192436352	192437652	0	1	1300	0
chr2	192438954	192440965	REMC_MyoepithelialBreast.87697	0	.	192438954	192440965	0	1	2011	0
chr2	192444188	192446223	REMC_MyoepithelialBreast.87699	0	.	192444188	192446223	0	1	2035	0
chr2	192456412	192457295	REMC_MyoepithelialBreast.87703	0	.	192456412	192457295	0	1	883	0
chr2	192474547	192475382	REMC_MyoepithelialBreast.87710	0	.	192474547	192475382	0	1	835	0
chr2	192479796	192481238	REMC_MyoepithelialBreast.87713	0	.	192479796	192481238	0	1	1442	0
chr2	192479938	192481070	K562.44007	0	.	192479938	192481070	0	1	1132	0
chr2	192774944	192775953	prostate_carcinoma.95043	0	.	192774944	192775953	0	1	1009	0
chr2	193057165	193057796	prostate_carcinoma.95058	0	.	193057165	193057796	0	1	631	0
chr2	193117330	193117857	prostate_normal.56953	0	.	193117330	193117857	0	1	527	0
chr2	193326870	193333571	prostate_carcinoma.95063	0	.	193326870	193333571	0	1	6701	0
chr2	193353863	193356918	prostate_carcinoma.95068	0	.	193353863	193356918	0	1	3055	0
chr2	193703263	193705711	H1_polyA+.110890	0	.	193703263	193705711	0	1	2448	0
chr2	193713421	193715364	H1_polyA+.110892	0	.	193713421	193715364	0	1	1943	0
chr2	193723902	193725122	H1_polyA+.110896	0	.	193723902	193725122	0	1	1220	0
chr2	194075709	194087052	H1_polyA+.110932	0	.	194075709	194087052	0	1	11343	0
chr2	194078036	194079570	melanoma_Garraway_short_term_cultures.66130	0	.	194078036	194079570	0	1	1534	0
chr2	194091895	194095741	H1_polyA+.110934	0	.	194091895	194095741	0	1	3846	0
chr2	194113916	194127046	H1_polyA+.110944	0	.	194113916	194127046	0	1	13130	0
chr2	194114894	194115741	melanoma_Garraway_short_term_cultures.66137	0	.	194114894	194115741	0	1	847	0
chr2	194123166	194123515	H1_rRNA-depleted_UCSD_REMC.83523	0	.	194123166	194123515	0	1	349	0
chr2	194129045	194130502	H1_polyA+.110937	0	.	194129045	194130502	0	1	1457	0
chr2	194130680	194138337	H1_polyA+.110938	0	.	194130680	194138337	0	1	7657	0
chr2	194152411	194159133	H1_polyA+.110959	0	.	194152411	194159133	0	1	6722	0
chr2	194156201	194160376	melanoma_Garraway_short_term_cultures.66150	0	.	194156201	194160376	0	1	4175	0
chr2	194157251	194157996	H9_polyA+.43729	0	.	194157251	194157996	0	1	745	0
chr2	194159224	194161593	H1_polyA+.110962	0	.	194159224	194161593	0	1	2369	0
chr2	194164772	194170265	H1_polyA+.110946	0	.	194164772	194170265	0	1	5493	0
chr2	194164816	194169281	melanoma_Garraway_short_term_cultures.66153	0	.	194164816	194169281	0	1	4465	0
chr2	194164929	194165774	H9_polyA+.43730	0	.	194164929	194165774	0	1	845	0
chr2	194166145	194166655	MB435_Burge.41564	0	.	194166145	194166655	0	1	510	0
chr2	194169453	194170184	melanoma_Garraway_short_term_cultures.66154	0	.	194169453	194170184	0	1	731	0
chr2	194189077	194193509	H1_polyA+.110954	0	.	194189077	194193509	0	1	4432	0
chr2	194284633	194285869	H1_polyA+.110990	0	.	194284633	194285869	0	1	1236	0
chr2	194416573	194443129	H1_polyA+.111006	0	+	194416573	194443129	0	2	121,2858	0,23698
chr2	194440197	194443129	H1_polyA+.111005	0	.	194440197	194443129	0	1	2932	0
chr2	194440352	194440965	B_Cells_Pritchard.3045637	0	.	194440352	194440965	0	1	613	0
chr2	194440398	194441204	H9_polyA+.43734	0	.	194440398	194441204	0	1	806	0
chr2	194441658	194442170	H9_polyA+.43735	0	.	194441658	194442170	0	1	512	0
chr2	194693386	194694538	B_Cells_Pritchard.3046057	0	.	194693386	194694538	0	1	1152	0
chr2	194696599	194698561	H1_polyA+.111010	0	.	194696599	194698561	0	1	1962	0
chr2	194701624	194701956	B_Cells_Pritchard.3046091	0	.	194701624	194701956	0	1	332	0
chr2	195972966	195973322	CD4_Snyder.70765	0	.	195972966	195973322	0	1	356	0
chr2	196112783	196113220	B_cells_Cheung.187254	0	.	196112783	196113220	0	1	437	0
chr2	196122896	196125368	HeLa_polyA+_Chen.34460	0	.	196122896	196125368	0	1	2472	0
chr2	196125420	196126329	HeLa_polyA+_Chen.34459	0	.	196125420	196126329	0	1	909	0
chr2	196125710	196126170	B_Cells_Pritchard.3048273	0	.	196125710	196126170	0	1	460	0
chr2	196647754	196648209	B_cells_Cheung.187420	0	.	196647754	196648209	0	1	455	0
chr2	196753043	196753963	CD4_Plagnol_activated.63044	0	.	196753043	196753963	0	1	920	0
chr2	196753245	196753896	B_Cells_Pritchard.3049841	0	-	196753245	196753896	0	1	651	0
chr2	197385764	197386996	REMC_BreastStem.47531	0	.	197385764	197386996	0	1	1232	0
chr2	197386037	197387014	REMC_LuminalBreast.94520	0	.	197386037	197387014	0	1	977	0
chr2	197387362	197399684	REMC_BreastStem.47532	0	.	197387362	197399684	0	1	12322	0
chr2	197391126	197395020	REMC_LuminalBreast.94523	0	.	197391126	197395020	0	1	3894	0
chr2	197391144	197399781	REMC_MyoepithelialBreast.87784	0	.	197391144	197399781	0	1	8637	0
chr2	197399572	197400323	B_cells_Cheung.187514	0	.	197399572	197400323	0	1	751	0
chr2	197399809	197401074	REMC_BreastStem.47533	0	.	197399809	197401074	0	1	1265	0
chr2	197404518	197404922	brain_AmbionMAQC.43353	0	.	197404518	197404922	0	1	404	0
chr2	198127689	198142301	prostate_carcinoma.95346	0	-	198127689	198142301	0	3	57,117,1046	0,549,13566
chr2	198140852	198142644	REMC_LuminalBreast.94579	0	.	198140852	198142644	0	1	1792	0
chr2	198141022	198142496	H1_polyA+.111205	0	.	198141022	198142496	0	1	1474	0
chr2	198141182	198142313	REMC_BreastStem.47572	0	.	198141182	198142313	0	1	1131	0
chr2	198141195	198142459	melanoma_Garraway_short_term_cultures.66294	0	.	198141195	198142459	0	1	1264	0
chr2	198141197	198142301	prostate_carcinoma.95347	0	.	198141197	198142301	0	1	1104	0
chr2	198141238	198142300	brain_AmbionMAQC.43413	0	.	198141238	198142300	0	1	1062	0
chr2	198141475	198142079	REMC_MyoepithelialBreast.87890	0	.	198141475	198142079	0	1	604	0
chr2	198141595	198142656	B_cells_Cheung.187814	0	.	198141595	198142656	0	1	1061	0
chr2	198256676	198260491	H1_polyA+.111239	0	.	198256676	198260491	0	1	3815	0
chr2	198259065	198259816	HeLa_polyA+_Chen.34515	0	.	198259065	198259816	0	1	751	0
chr2	198259381	198259926	prostate_carcinoma.95250	0	.	198259381	198259926	0	1	545	0
chr2	198728163	198728781	CD4_Plagnol_resting.61229	0	.	198728163	198728781	0	1	618	0
chr2	200268606	200268969	B_Cells_Pritchard.3057575	0	.	200268606	200268969	0	1	363	0
chr2	200269020	200269373	A549_Myers.83498	0	.	200269020	200269373	0	1	353	0
chr2	200331306	200332061	prostate_carcinoma.95284	0	.	200331306	200332061	0	1	755	0
chr2	200331354	200331953	B_Cells_Pritchard.3057713	0	.	200331354	200331953	0	1	599	0
chr2	200333586	200346702	Rinn_00005309	0	-	200333586	200346702	0	2	217,274	0,12842
chr2	200337100	200338724	prostate_carcinoma.95287	0	.	200337100	200338724	0	1	1624	0
chr2	200337672	200338374	B_cells_Cheung.187882	0	.	200337672	200338374	0	1	702	0
chr2	200340904	200342366	MIP101.66391	0	.	200340904	200342366	0	1	1462	0
chr2	200341572	200342451	prostate_carcinoma.95289	0	.	200341572	200342451	0	1	879	0
chr2	200341622	200342275	B_Cells_Pritchard.3057747	0	.	200341622	200342275	0	1	653	0
chr2	200341629	200342111	B_cells_Cheung.187884	0	.	200341629	200342111	0	1	482	0
chr2	200342551	200343225	B_Cells_Pritchard.3057745	0	.	200342551	200343225	0	1	674	0
chr2	200342562	200344035	MIP101.66392	0	.	200342562	200344035	0	1	1473	0
chr2	200352461	200353460	B_Cells_Pritchard.3057781	0	.	200352461	200353460	0	1	999	0
chr2	200365264	200365714	HepG2_Caltech_ENCODE.36890	0	.	200365264	200365714	0	1	450	0
chr2	200365290	200365864	T47D_Burge_Thompson.28286	0	.	200365290	200365864	0	1	574	0
chr2	200365290	200365807	brain_AmbionMAQC.43447	0	.	200365290	200365807	0	1	517	0
chr2	200365316	200365752	kidney_Raymond.95324	0	.	200365316	200365752	0	1	436	0
chr2	200371374	200372232	brain_AmbionMAQC.43450	0	.	200371374	200372232	0	1	858	0
chr2	200373724	200374625	B_cells_Cheung.187906	0	.	200373724	200374625	0	1	901	0
chr2	200385479	200424111	ENST00000420128	0	-	200385479	200424111	0	5	213,186,96,122,404	0,7060,33563,36336,38228
chr2	200385557	200392719	Rinn_00004545	0	-	200385557	200392719	0	2	135,181	0,6981
chr2	200391696	200392069	kidney_Gilad.80929	0	.	200391696	200392069	0	1	373	0
chr2	200392422	200424088	REMC_LuminalBreast.94617	0	-	200392422	200424088	0	6	303,732,96,122,255,49	0,24346,26620,29393,31285,31617
chr2	200401937	200424155	B_cells_Cheung.187913	0	-	200401937	200424155	0	4	118,96,122,116	0,17105,19878,22102
chr2	200402839	200424110	MIP101.66407	0	-	200402839	200424110	0	6	14,169,1594,96,133,384	0,3891,13067,16203,18976,20887
chr2	200405441	200405949	MIP101.66408	0	.	200405441	200405949	0	1	508	0
chr2	200405894	200406207	B_cells_Cheung.187929	0	.	200405894	200406207	0	1	313	0
chr2	200405967	200407893	H1_polyA+.111279	0	.	200405967	200407893	0	1	1926	0
chr2	200406232	200407263	prostate_carcinoma.95300	0	.	200406232	200407263	0	1	1031	0
chr2	200416093	200424139	prostate_carcinoma.95301	0	-	200416093	200424139	0	4	1407,96,122,413	0,2949,5722,7633
chr2	200416104	200424133	BT20_Thompson.21421	0	-	200416104	200424133	0	4	1396,96,122,94	0,2938,5711,7935
chr2	200417181	200424138	B_Cells_Pritchard.3058069	0	-	200417181	200424138	0	4	319,96,122,431	0,1861,4634,6526
chr2	200417183	200421925	MCF7_Burge_Thompson.30746	0	-	200417183	200421925	0	3	317,96,110	0,1859,4632
chr2	200417287	200424135	brain_AmbionMAQC.43455	0	-	200417287	200424135	0	4	213,96,122,428	0,1755,4528,6420
chr2	200419039	200424183	ZR751_Thompson.23260	0	-	200419039	200424183	0	3	99,122,476	0,2776,4668
chr2	200421807	200424229	liver_polyA+.125367	0	-	200421807	200424229	0	3	130,210,190	0,1900,2232
chr2	200421916	200424085	prostate_normal.57078	0	-	200421916	200424085	0	2	21,378	0,1791
chr2	200423665	200424486	A549_Myers.83505	0	.	200423665	200424486	0	1	821	0
chr2	200423706	200424111	MCF7_Burge_Thompson.30747	0	.	200423706	200424111	0	1	405	0
chr2	200423709	200424138	BT20_Thompson.21423	0	.	200423709	200424138	0	1	429	0
chr2	200423715	200424155	B_cells_Cheung.187915	0	.	200423715	200424155	0	1	440	0
chr2	200456342	200457689	REMC_LuminalBreast.94618	0	.	200456342	200457689	0	1	1347	0
chr2	200458198	200459492	REMC_MyoepithelialBreast.87962	0	.	200458198	200459492	0	1	1294	0
chr2	200458782	200460773	H1_polyA+.111284	0	.	200458782	200460773	0	1	1991	0
chr2	200477540	200479931	MIP101.66467	0	.	200477540	200479931	0	1	2391	0
chr2	200477643	200479338	B_Cells_Pritchard.3058097	0	.	200477643	200479338	0	1	1695	0
chr2	200477683	200479010	B_cells_Cheung.187947	0	.	200477683	200479010	0	1	1327	0
chr2	200477699	200478569	REMC_LuminalBreast.94620	0	.	200477699	200478569	0	1	870	0
chr2	200583341	200585249	REMC_MyoepithelialBreast.88002	0	.	200583341	200585249	0	1	1908	0
chr2	200583530	200584706	REMC_LuminalBreast.94641	0	.	200583530	200584706	0	1	1176	0
chr2	200583555	200584399	B_Cells_Pritchard.3058395	0	.	200583555	200584399	0	1	844	0
chr2	200630051	200631024	REMC_BreastStem.47605	0	.	200630051	200631024	0	1	973	0
chr2	200631531	200634413	REMC_MyoepithelialBreast.87982	0	.	200631531	200634413	0	1	2882	0
chr2	200696486	200698141	HepG2_Caltech_ENCODE.36899	0	.	200696486	200698141	0	1	1655	0
chr2	200697280	200697984	K562.44144	0	.	200697280	200697984	0	1	704	0
chr2	200769528	200770924	H1_polyA+.111304	0	.	200769528	200770924	0	1	1396	0
chr2	201056675	201057318	B_cells_Cheung.187974	0	.	201056675	201057318	0	1	643	0
chr2	201056752	201057151	A549_Myers.83548	0	.	201056752	201057151	0	1	399	0
chr2	201057459	201060700	REMC_MyoepithelialBreast.88059	0	.	201057459	201060700	0	1	3241	0
chr2	201397889	201398249	HepG2_Caltech_ENCODE.36933	0	.	201397889	201398249	0	1	360	0
chr2	201397899	201398373	HeLa_polyA-_Chen.18090	0	.	201397899	201398373	0	1	474	0
chr2	201399418	201402673	REMC_MyoepithelialBreast.88215	0	.	201399418	201402673	0	1	3255	0
chr2	201399435	201401921	B_cells_Cheung.188013	0	.	201399435	201401921	0	1	2486	0
chr2	201402004	201402696	B_cells_Cheung.188014	0	.	201402004	201402696	0	1	692	0
chr2	201402051	201402709	REMC_BreastStem.47626	0	.	201402051	201402709	0	1	658	0
chr2	201402051	201402692	CD4_Plagnol_activated.62981	0	.	201402051	201402692	0	1	641	0
chr2	201402148	201402671	CD4_Snyder.71438	0	.	201402148	201402671	0	1	523	0
chr2	201402310	201402669	CD4_Plagnol_resting.61248	0	.	201402310	201402669	0	1	359	0
chr2	201410347	201411902	REMC_MyoepithelialBreast.88219	0	.	201410347	201411902	0	1	1555	0
chr2	201410464	201411992	REMC_BreastStem.47631	0	.	201410464	201411992	0	1	1528	0
chr2	201410912	201411677	REMC_LuminalBreast.94719	0	.	201410912	201411677	0	1	765	0
chr2	201424166	201424896	melanoma_Garraway_short_term_cultures.66374	0	.	201424166	201424896	0	1	730	0
chr2	201424371	201424898	CD4_Plagnol_activated.62984	0	.	201424371	201424898	0	1	527	0
chr2	201480011	201481342	B_cells_Cheung.190293	0	.	201480011	201481342	0	1	1331	0
chr2	201480115	201481349	B_Cells_Pritchard.3060307	0	-	201480115	201481349	0	1	1234	0
chr2	201480490	201481345	REMC_MyoepithelialBreast.88066	0	.	201480490	201481345	0	1	855	0
chr2	201538538	201540455	REMC_BreastStem.47659	0	.	201538538	201540455	0	1	1917	0
chr2	201538745	201542544	MIP101.66731	0	.	201538745	201542544	0	1	3799	0
chr2	201538820	201540272	prostate_normal.57249	0	.	201538820	201540272	0	1	1452	0
chr2	201539344	201540179	HepG2_Caltech_ENCODE.36953	0	.	201539344	201540179	0	1	835	0
chr2	201542694	201543408	REMC_LuminalBreast.94764	0	.	201542694	201543408	0	1	714	0
chr2	201660477	201661097	H1_polyA+.111720	0	.	201660477	201661097	0	1	620	0
chr2	201660602	201661301	B_cells_Cheung.188042	0	.	201660602	201661301	0	1	699	0
chr2	201665021	201666909	H1_polyA+.111725	0	.	201665021	201666909	0	1	1888	0
chr2	201666055	201666892	REMC_LuminalBreast.94802	0	.	201666055	201666892	0	1	837	0
chr2	201676603	201677915	REMC_MyoepithelialBreast.88064	0	.	201676603	201677915	0	1	1312	0
chr2	201677998	201679553	B_cells_Cheung.188061	0	.	201677998	201679553	0	1	1555	0
chr2	201678213	201679501	REMC_MyoepithelialBreast.88065	0	.	201678213	201679501	0	1	1288	0
chr2	201741412	201742311	BT474_Burge_Thompson.33539	0	.	201741412	201742311	0	1	899	0
chr2	201741413	201742547	MCF7_Burge_Thompson.30784	0	.	201741413	201742547	0	1	1134	0
chr2	201741533	201742575	MDAMB468_Thompson.23733	0	.	201741533	201742575	0	1	1042	0
chr2	201741535	201742548	melanoma_Garraway_short_term_cultures.66432	0	.	201741535	201742548	0	1	1013	0
chr2	201741554	201742575	CD4_Plagnol_activated.63701	0	.	201741554	201742575	0	3	357,223,166	0,535,855
chr2	201741678	201742603	HeLa_polyA+_Chen.34591	0	.	201741678	201742603	0	1	925	0
chr2	201742074	201742580	ZR751_Thompson.23289	0	.	201742074	201742580	0	1	506	0
chr2	201742081	201742580	BT20_Thompson.21445	0	.	201742081	201742580	0	1	499	0
chr2	201742090	201745951	MCF10A_Thompson.20769	0	.	201742090	201745951	0	1	3861	0
chr2	201742306	201744647	HIT000045267	0	+	201742306	201744647	0	1	2341	0
chr2	201742420	201746144	BT474_Burge_Thompson.33540	0	.	201742420	201746144	0	1	3724	0
chr2	201742684	201744040	H1_polyA+.111752	0	.	201742684	201744040	0	1	1356	0
chr2	201742690	201746219	B_cells_Cheung.188082	0	.	201742690	201746219	0	1	3529	0
chr2	201742692	201744045	MCF7_Burge_Thompson.30785	0	.	201742692	201744045	0	1	1353	0
chr2	201742692	201745720	ZR751_Thompson.23291	0	.	201742692	201745720	0	1	3028	0
chr2	201742692	201746338	CD4_Plagnol_activated.63702	0	.	201742692	201746338	0	1	3646	0
chr2	201742694	201743643	BT20_Thompson.21446	0	.	201742694	201743643	0	1	949	0
chr2	201742765	201743345	HeLa_polyA+_Chen.34590	0	.	201742765	201743345	0	1	580	0
chr2	201742802	201743746	brain_AmbionMAQC.43514	0	.	201742802	201743746	0	1	944	0
chr2	201742816	201745977	MDAMB468_Thompson.23736	0	.	201742816	201745977	0	1	3161	0
chr2	201742833	201744701	HIT000044537	0	+	201742833	201744701	0	1	1868	0
chr2	201746457	201750033	REMC_MyoepithelialBreast.88255	0	.	201746457	201750033	0	1	3576	0
chr2	201746534	201751144	Rinn_00003986	0	+	201746534	201751144	0	2	2256,730	0,3880
chr2	201746538	201751530	Rinn_00003987	0	+	201746538	201751530	0	2	2257,1116	0,3876
chr2	201746569	201751267	CD4_Plagnol_activated.63704	0	+	201746569	201751267	0	2	115,623	0,4075
chr2	201746894	201748511	B_cells_Cheung.188084	0	.	201746894	201748511	0	1	1617	0
chr2	201746916	201748424	BT474_Burge_Thompson.33541	0	.	201746916	201748424	0	1	1508	0
chr2	201746934	201748071	melanoma_Garraway_short_term_cultures.66435	0	.	201746934	201748071	0	1	1137	0
chr2	201747208	201748125	ZR751_Thompson.23292	0	.	201747208	201748125	0	1	917	0
chr2	201747225	201748115	brain_AmbionMAQC.43516	0	.	201747225	201748115	0	1	890	0
chr2	201747344	201749656	HIT000016454	0	-	201747344	201749656	0	1	2312	0
chr2	201747456	201748139	liver_polyA+.125621	0	.	201747456	201748139	0	1	683	0
chr2	201747593	201754759	liver_polyA+.125622	0	-	201747593	201754759	0	2	481,77	0,7089
chr2	201747658	201748116	CD4_Snyder.71510	0	.	201747658	201748116	0	1	458	0
chr2	201748514	201749961	HepG2_Caltech_ENCODE.36976	0	.	201748514	201749961	0	1	1447	0
chr2	201750186	201752667	REMC_BreastStem.47692	0	.	201750186	201752667	0	1	2481	0
chr2	201750231	201751295	B_cells_Cheung.188086	0	.	201750231	201751295	0	1	1064	0
chr2	201750235	201752574	REMC_MyoepithelialBreast.88256	0	.	201750235	201752574	0	1	2339	0
chr2	201750244	201751792	HepG2_Caltech_ENCODE.36977	0	.	201750244	201751792	0	1	1548	0
chr2	201750410	201751267	CD4_Plagnol_activated.63705	0	.	201750410	201751267	0	1	857	0
chr2	201750437	201751289	brain_AmbionMAQC.43519	0	.	201750437	201751289	0	1	852	0
chr2	201751374	201752333	CD4_Plagnol_resting.61956	0	.	201751374	201752333	0	1	959	0
chr2	201751413	201751861	B_cells_Cheung.188087	0	.	201751413	201751861	0	1	448	0
chr2	201751426	201752283	CD4_Plagnol_activated.63708	0	.	201751426	201752283	0	1	857	0
chr2	201751508	201752330	brain_AmbionMAQC.43520	0	.	201751508	201752330	0	1	822	0
chr2	201751909	201752296	HepG2_Caltech_ENCODE.36978	0	.	201751909	201752296	0	1	387	0
chr2	201751913	201752334	B_cells_Cheung.188088	0	.	201751913	201752334	0	1	421	0
chr2	201752891	201754362	REMC_LuminalBreast.94816	0	.	201752891	201754362	0	1	1471	0
chr2	202057726	202058918	melanoma_Garraway_short_term_cultures.66468	0	.	202057726	202058918	0	1	1192	0
chr2	202499252	202499998	H1_polyA+.111499	0	.	202499252	202499998	0	1	746	0
chr2	202509481	202514483	H1_polyA+.111503	0	.	202509481	202514483	0	1	5002	0
chr2	202516760	202519995	H1_polyA+.111506	0	.	202516760	202519995	0	1	3235	0
chr2	202529400	202529970	H9_polyA+.43992	0	.	202529400	202529970	0	1	570	0
chr2	202529473	202530152	H1_rRNA-depleted_UCSD_REMC.83950	0	.	202529473	202530152	0	1	679	0
chr2	202531432	202534949	H1_polyA+.111510	0	.	202531432	202534949	0	1	3517	0
chr2	202535187	202543044	H1_polyA+.111497	0	.	202535187	202543044	0	1	7857	0
chr2	202536939	202537264	NEC_from_H9.72321	0	.	202536939	202537264	0	1	325	0
chr2	202536946	202537811	H9_polyA+.44000	0	.	202536946	202537811	0	1	865	0
chr2	202541524	202541955	H9_polyA+.43997	0	.	202541524	202541955	0	1	431	0
chr2	202544882	202545727	H9_polyA-_Chen.13917	0	.	202544882	202545727	0	1	845	0
chr2	202545687	202555974	H1_polyA+.111498	0	+	202545687	202555974	0	2	29,2311	0,7976
chr2	202552607	202555974	H1_polyA+.111496	0	-	202552607	202555974	0	2	80,2972	0,395
chr2	202553041	202555844	prostate_carcinoma.95447	0	+	202553041	202555844	0	2	186,2418	0,385
chr2	202553328	202553804	H1_rRNA-depleted_UCSD_REMC.83965	0	.	202553328	202553804	0	1	476	0
chr2	202553343	202554373	prostate_normal.57170	0	.	202553343	202554373	0	1	1030	0
chr2	202553376	202555843	H9_polyA+.44006	0	.	202553376	202555843	0	1	2467	0
chr2	202556107	202559935	H1_polyA+.111512	0	.	202556107	202559935	0	1	3828	0
chr2	202556147	202558188	prostate_carcinoma.95448	0	.	202556147	202558188	0	1	2041	0
chr2	202557302	202557615	H1_rRNA-depleted_UCSD_REMC.83968	0	.	202557302	202557615	0	1	313	0
chr2	202558311	202558891	prostate_carcinoma.95449	0	.	202558311	202558891	0	1	580	0
chr2	202560090	202560935	H1_polyA+.111513	0	.	202560090	202560935	0	1	845	0
chr2	202561611	202562717	H1_polyA+.111514	0	.	202561611	202562717	0	1	1106	0
chr2	202567604	202570566	H1_polyA+.111517	0	.	202567604	202570566	0	1	2962	0
chr2	202569028	202569989	REMC_MyoepithelialBreast.88164	0	.	202569028	202569989	0	1	961	0
chr2	202581804	202585077	H1_polyA+.111523	0	.	202581804	202585077	0	1	3273	0
chr2	202599022	202599993	H1_polyA+.111528	0	.	202599022	202599993	0	1	971	0
chr2	202602103	202604858	H1_polyA+.111530	0	.	202602103	202604858	0	1	2755	0
chr2	202603147	202604884	REMC_MyoepithelialBreast.88175	0	.	202603147	202604884	0	1	1737	0
chr2	202604994	202606308	NEC_from_H9.72328	0	.	202604994	202606308	0	1	1314	0
chr2	202605719	202606318	BT20_Thompson.21479	0	.	202605719	202606318	0	1	599	0
chr2	202618795	202621581	REMC_BreastStem.47701	0	.	202618795	202621581	0	1	2786	0
chr2	202619463	202620291	REMC_MyoepithelialBreast.88180	0	.	202619463	202620291	0	1	828	0
chr2	202620385	202622292	REMC_MyoepithelialBreast.88181	0	.	202620385	202622292	0	1	1907	0
chr2	202622430	202623882	REMC_BreastStem.47702	0	.	202622430	202623882	0	1	1452	0
chr2	202626181	202627295	REMC_BreastStem.47703	0	.	202626181	202627295	0	1	1114	0
chr2	202886560	202887815	B_cells_Cheung.188456	0	.	202886560	202887815	0	1	1255	0
chr2	202887963	202892644	B_cells_Cheung.188457	0	.	202887963	202892644	0	1	4681	0
chr2	202893825	202906590	B_Cells_Pritchard.3071779	0	-	202893825	202906590	0	9	2668,945,276,358,980,760,14,14,27	0,2668,3838,4278,4744,6755,9570,9585,12738
chr2	202894759	202895946	melanoma_Garraway_short_term_cultures.66539	0	.	202894759	202895946	0	1	1187	0
chr2	202895193	202896023	CD4_Plagnol_activated.63082	0	.	202895193	202896023	0	1	830	0
chr2	202896013	202896341	CD4_Plagnol_resting.61368	0	.	202896013	202896341	0	1	328	0
chr2	202898528	202899809	REMC_MyoepithelialBreast.88395	0	.	202898528	202899809	0	1	1281	0
chr2	202902073	202903217	REMC_MyoepithelialBreast.88397	0	.	202902073	202903217	0	1	1144	0
chr2	202906102	202906815	CD4_Plagnol_activated.63090	0	.	202906102	202906815	0	1	713	0
chr2	202906320	202906958	REMC_MyoepithelialBreast.88399	0	.	202906320	202906958	0	1	638	0
chr2	202920385	202922603	REMC_MyoepithelialBreast.88406	0	.	202920385	202922603	0	1	2218	0
chr2	202921671	202924858	B_cells_Cheung.188467	0	.	202921671	202924858	0	1	3187	0
chr2	202923641	202926634	REMC_MyoepithelialBreast.88408	0	.	202923641	202926634	0	1	2993	0
chr2	202940215	202940699	B_cells_Cheung.188285	0	.	202940215	202940699	0	1	484	0
chr2	202944393	202945775	REMC_BreastStem.47717	0	.	202944393	202945775	0	1	1382	0
chr2	202944571	202946067	REMC_LuminalBreast.94944	0	.	202944571	202946067	0	1	1496	0
chr2	202944586	202945790	REMC_MyoepithelialBreast.88229	0	.	202944586	202945790	0	1	1204	0
chr2	202944606	202946117	B_cells_Cheung.188290	0	.	202944606	202946117	0	1	1511	0
chr2	202944663	202945856	MIP101.66570	0	.	202944663	202945856	0	1	1193	0
chr2	202944784	202945984	H1_polyA+.111575	0	.	202944784	202945984	0	1	1200	0
chr2	202944833	202945663	HepG2_Caltech_ENCODE.37033	0	.	202944833	202945663	0	1	830	0
chr2	203142538	203142844	B_cells_Cheung.188298	0	.	203142538	203142844	0	1	306	0
chr2	203143098	203143971	B_cells_Cheung.188299	0	.	203143098	203143971	0	1	873	0
chr2	203143099	203143796	CD4_Plagnol_activated.63137	0	.	203143099	203143796	0	1	697	0
chr2	203143105	203143576	CD4_Plagnol_resting.61405	0	.	203143105	203143576	0	1	471	0
chr2	203143105	203143921	melanoma_Garraway_short_term_cultures.66629	0	.	203143105	203143921	0	1	816	0
chr2	203143120	203144032	B_Cells_Pritchard.3063883	0	.	203143120	203144032	0	1	912	0
chr2	203450813	203452538	REMC_BreastStem.47742	0	.	203450813	203452538	0	1	1725	0
chr2	203879815	203885508	REMC_LuminalBreast.95701	0	.	203879815	203885508	0	1	5693	0
chr2	203879849	203885433	REMC_MyoepithelialBreast.89030	0	.	203879849	203885433	0	1	5584	0
chr2	203880993	203882099	HepG2_Caltech_ENCODE.37092	0	.	203880993	203882099	0	1	1106	0
chr2	203881520	203882611	H1_polyA+.111850	0	.	203881520	203882611	0	1	1091	0
chr2	203881550	203882658	B_cells_Cheung.188751	0	.	203881550	203882658	0	1	1108	0
chr2	203881570	203882679	CD4_Plagnol_resting.61486	0	.	203881570	203882679	0	1	1109	0
chr2	203881609	203882218	CD4_Plagnol_activated.63226	0	.	203881609	203882218	0	1	609	0
chr2	203881689	203882231	BT474_Burge_Thompson.33616	0	.	203881689	203882231	0	1	542	0
chr2	203897188	203897591	B_cells_Cheung.188758	0	.	203897188	203897591	0	1	403	0
chr2	204540575	204541017	CD4_Plagnol_resting.61539	0	.	204540575	204541017	0	1	442	0
chr2	204541655	204543936	B_Cells_Pritchard.3067463	0	.	204541655	204543936	0	1	2281	0
chr2	204663423	204682817	Rinn_00003081	0	+	204663423	204682817	0	5	137,108,60,158,112	0,886,11757,15894,19282
chr2	206498771	206499151	A549_Myers.83904	0	.	206498771	206499151	0	1	380	0
chr2	206532493	206533671	REMC_MyoepithelialBreast.88416	0	.	206532493	206533671	0	1	1178	0
chr2	206538847	206541090	REMC_MyoepithelialBreast.88421	0	.	206538847	206541090	0	1	2243	0
chr2	206549186	206549875	REMC_MyoepithelialBreast.88425	0	.	206549186	206549875	0	1	689	0
chr2	206549195	206549650	B_Cells_Pritchard.3071417	0	.	206549195	206549650	0	1	455	0
chr2	206561897	206563755	REMC_MyoepithelialBreast.88432	0	.	206561897	206563755	0	1	1858	0
chr2	206561920	206563836	B_Cells_Pritchard.3071459	0	.	206561920	206563836	0	1	1916	0
chr2	206561939	206562278	BT474_Burge_Thompson.33628	0	.	206561939	206562278	0	1	339	0
chr2	206561949	206563553	B_cells_Cheung.188851	0	.	206561949	206563553	0	1	1604	0
chr2	206689830	206691780	HeLa_polyA+_Chen.34710	0	.	206689830	206691780	0	1	1950	0
chr2	206689834	206691343	melanoma_Garraway_short_term_cultures.66805	0	.	206689834	206691343	0	1	1509	0
chr2	206689835	206691289	MeWo_Garraway.35576	0	.	206689835	206691289	0	1	1454	0
chr2	206689836	206691830	MDAMB468_Thompson.23864	0	.	206689836	206691830	0	1	1994	0
chr2	206689843	206691329	MCF10A_Thompson.20886	0	.	206689843	206691329	0	1	1486	0
chr2	206689846	206691438	T47D_Burge_Thompson.28429	0	.	206689846	206691438	0	1	1592	0
chr2	206689847	206691277	BT20_Thompson.21549	0	.	206689847	206691277	0	1	1430	0
chr2	206689849	206691346	CD4_Plagnol_resting.61619	0	.	206689849	206691346	0	1	1497	0
chr2	206689853	206691319	BT474_Burge_Thompson.33688	0	.	206689853	206691319	0	1	1466	0
chr2	206689855	206691416	CD4_Plagnol_activated.63333	0	.	206689855	206691416	0	1	1561	0
chr2	206690010	206691307	MDAMB231_Thompson.21552	0	.	206690010	206691307	0	1	1297	0
chr2	206690620	206691326	liver_polyA+.126228	0	.	206690620	206691326	0	1	706	0
chr2	206690621	206691281	A549_Myers.83932	0	.	206690621	206691281	0	1	660	0
chr2	206690647	206691329	NEC_from_H9.72556	0	.	206690647	206691329	0	1	682	0
chr2	206690655	206691091	HeLa_Bartel_miR-155_12hr.31380	0	.	206690655	206691091	0	1	436	0
chr2	206690732	206691287	MeI_Garraway.17085	0	.	206690732	206691287	0	1	555	0
chr2	206692671	206693644	skeletal_muscle_Burge.28311	0	.	206692671	206693644	0	1	973	0
chr2	206692737	206693285	A549_Myers.83933	0	.	206692737	206693285	0	1	548	0
chr2	206692739	206693298	NEC_from_H9.72558	0	.	206692739	206693298	0	1	559	0
chr2	206692763	206693963	H1_rRNA-depleted_UCSD_REMC.84212	0	.	206692763	206693963	0	1	1200	0
chr2	206692940	206693427	HeLa_polyA-_Chen.18149	0	.	206692940	206693427	0	1	487	0
chr2	206837032	206839212	HIT000004479	0	-	206837032	206839212	0	1	2180	0
chr2	207369718	207432698	pHIT000005407	0	-	207369718	207432698	0	4	57,111,189,138	0,16896,29215,62842
chr2	207369718	207434517	pHIT000100536	0	-	207369718	207434517	0	4	57,111,189,171	0,16896,29215,64628
chr2	207371131	207374916	prostate_carcinoma.95822	0	.	207371131	207374916	0	1	3785	0
chr2	207372625	207374211	MIP101.66802	0	.	207372625	207374211	0	1	1586	0
chr2	207373069	207374598	B_Cells_Pritchard.3073891	0	.	207373069	207374598	0	1	1529	0
chr2	207373572	207374174	brain_AmbionMAQC.43706	0	.	207373572	207374174	0	1	602	0
chr2	207378179	207379819	REMC_LuminalBreast.95293	0	.	207378179	207379819	0	1	1640	0
chr2	207378286	207380212	H9_polyA+.44188	0	.	207378286	207380212	0	1	1926	0
chr2	207378297	207378972	REMC_BreastStem.47857	0	.	207378297	207378972	0	1	675	0
chr2	207378343	207379254	B_cells_Cheung.189001	0	.	207378343	207379254	0	1	911	0
chr2	207385565	207386073	B_cells_Cheung.189002	0	.	207385565	207386073	0	1	508	0
chr2	207403426	207405430	REMC_LuminalBreast.95302	0	.	207403426	207405430	0	1	2004	0
chr2	207403428	207404745	REMC_MyoepithelialBreast.88494	0	.	207403428	207404745	0	1	1317	0
chr2	207405525	207407903	REMC_LuminalBreast.95303	0	.	207405525	207407903	0	1	2378	0
chr2	207405985	207408489	REMC_MyoepithelialBreast.88496	0	.	207405985	207408489	0	1	2504	0
chr2	207411551	207413573	REMC_MyoepithelialBreast.88499	0	.	207411551	207413573	0	1	2022	0
chr2	207411715	207412909	REMC_LuminalBreast.95305	0	.	207411715	207412909	0	1	1194	0
chr2	207413974	207415169	H1_polyA+.112080	0	.	207413974	207415169	0	1	1195	0
chr2	207418646	207423271	REMC_LuminalBreast.95255	0	.	207418646	207423271	0	1	4625	0
chr2	207418649	207422302	REMC_MyoepithelialBreast.88502	0	.	207418649	207422302	0	1	3653	0
chr2	207418762	207420804	MIP101.66810	0	.	207418762	207420804	0	1	2042	0
chr2	207420229	207421641	H1_polyA+.112084	0	.	207420229	207421641	0	1	1412	0
chr2	207420633	207421295	B_Cells_Pritchard.3074059	0	.	207420633	207421295	0	1	662	0
chr2	207420764	207421826	REMC_BreastStem.47861	0	.	207420764	207421826	0	1	1062	0
chr2	207421810	207422748	MIP101.66811	0	.	207421810	207422748	0	1	938	0
chr2	207422448	207424056	REMC_MyoepithelialBreast.88503	0	.	207422448	207424056	0	1	1608	0
chr2	207423043	207423376	liver_polyA+.126273	0	.	207423043	207423376	0	1	333	0
chr2	207434695	207436330	REMC_LuminalBreast.95260	0	.	207434695	207436330	0	1	1635	0
chr2	207434727	207435633	prostate_carcinoma.95830	0	.	207434727	207435633	0	1	906	0
chr2	207434974	207435599	B_Cells_Pritchard.3074113	0	.	207434974	207435599	0	1	625	0
chr2	207435073	207435970	REMC_MyoepithelialBreast.88509	0	.	207435073	207435970	0	1	897	0
chr2	207435247	207436486	H1_polyA+.112089	0	.	207435247	207436486	0	1	1239	0
chr2	207436586	207437423	H1_polyA+.112090	0	.	207436586	207437423	0	1	837	0
chr2	207437712	207440390	REMC_LuminalBreast.95262	0	.	207437712	207440390	0	1	2678	0
chr2	207437741	207439462	REMC_MyoepithelialBreast.88511	0	.	207437741	207439462	0	1	1721	0
chr2	207445317	207447134	REMC_MyoepithelialBreast.88514	0	.	207445317	207447134	0	1	1817	0
chr2	207451644	207453391	REMC_LuminalBreast.95268	0	.	207451644	207453391	0	1	1747	0
chr2	207454585	207457315	MIP101.66818	0	.	207454585	207457315	0	1	2730	0
chr2	207455566	207457029	REMC_MyoepithelialBreast.88521	0	.	207455566	207457029	0	1	1463	0
chr2	207474393	207475721	REMC_MyoepithelialBreast.88531	0	.	207474393	207475721	0	1	1328	0
chr2	207476334	207477858	REMC_MyoepithelialBreast.88532	0	.	207476334	207477858	0	1	1524	0
chr2	207476565	207477283	MIP101.66822	0	.	207476565	207477283	0	1	718	0
chr2	207478255	207481006	REMC_MyoepithelialBreast.88533	0	.	207478255	207481006	0	1	2751	0
chr2	207478433	207480886	REMC_LuminalBreast.95278	0	.	207478433	207480886	0	1	2453	0
chr2	207479786	207480860	MIP101.66824	0	.	207479786	207480860	0	1	1074	0
chr2	207490453	207492573	REMC_MyoepithelialBreast.88536	0	.	207490453	207492573	0	1	2120	0
chr2	207491449	207492742	MIP101.66825	0	.	207491449	207492742	0	1	1293	0
chr2	207500193	207506100	REMC_MyoepithelialBreast.88538	0	.	207500193	207506100	0	1	5907	0
chr2	207501170	207504575	REMC_LuminalBreast.95284	0	.	207501170	207504575	0	1	3405	0
chr2	207544377	207545461	H1_polyA+.112108	0	.	207544377	207545461	0	1	1084	0
chr2	207545039	207545623	REMC_MyoepithelialBreast.88544	0	.	207545039	207545623	0	1	584	0
chr2	207640310	207640812	REMC_MyoepithelialBreast.88548	0	.	207640310	207640812	0	1	502	0
chr2	207749464	207812665	Rinn_00004564	0	-	207749464	207812665	0	4	10493,123,113,1610	0,58992,61323,61591
chr2	207749464	207809924	Rinn_00004563	0	-	207749464	207809924	0	3	10493,167,47	0,58941,60413
chr2	207752780	207756163	B_Cells_Pritchard.3074999	0	-	207752780	207756163	0	2	696,1934	0,1449
chr2	207752881	207757102	REMC_MyoepithelialBreast.88725	0	.	207752881	207757102	0	1	4221	0
chr2	207754164	207756212	H1_polyA+.112130	0	.	207754164	207756212	0	1	2048	0
chr2	207754472	207755547	REMC_BreastStem.47873	0	.	207754472	207755547	0	1	1075	0
chr2	207754873	207755783	B_cells_Cheung.189029	0	.	207754873	207755783	0	1	910	0
chr2	207759001	207827257	Rinn_00005327	0	-	207759001	207827257	0	5	956,116,113,63,101	0,49455,51786,54243,68155
chr2	207759176	207811024	Rinn_00005329	0	-	207759176	207811024	0	3	781,167,237	0,49229,51611
chr2	207799653	207800116	B_Cells_Pritchard.3075179	0	.	207799653	207800116	0	1	463	0
chr2	207800791	207801857	B_Cells_Pritchard.3075189	0	.	207800791	207801857	0	1	1066	0
chr2	207810500	207812497	H1_polyA+.112134	0	.	207810500	207812497	0	1	1997	0
chr2	207810786	207813291	melanoma_Garraway_short_term_cultures.66851	0	.	207810786	207813291	0	1	2505	0
chr2	207810799	207813297	prostate_carcinoma.95869	0	.	207810799	207813297	0	1	2498	0
chr2	207810978	207812421	MIP101.66845	0	.	207810978	207812421	0	1	1443	0
chr2	207811818	207812403	CD4_Plagnol_resting.61598	0	.	207811818	207812403	0	1	585	0
chr2	207841039	207841440	B_Cells_Pritchard.3075325	0	.	207841039	207841440	0	1	401	0
chr2	207867826	207868241	B_Cells_Pritchard.3075437	0	.	207867826	207868241	0	1	415	0
chr2	207883529	207884071	B_Cells_Pritchard.3075491	0	.	207883529	207884071	0	1	542	0
chr2	207896381	207896831	B_cells_Cheung.189049	0	.	207896381	207896831	0	1	450	0
chr2	207896394	207896831	B_Cells_Pritchard.3075541	0	.	207896394	207896831	0	1	437	0
chr2	207916957	207918814	B_cells_Cheung.189055	0	.	207916957	207918814	0	1	1857	0
chr2	207925064	207929105	B_cells_Cheung.189058	0	.	207925064	207929105	0	1	4041	0
chr2	207927296	207929027	B_Cells_Pritchard.3075623	0	.	207927296	207929027	0	1	1731	0
chr2	207929531	207932400	B_Cells_Pritchard.3075629	0	.	207929531	207932400	0	1	2869	0
chr2	207931620	207932359	B_cells_Cheung.189060	0	.	207931620	207932359	0	1	739	0
chr2	207936344	207940559	B_Cells_Pritchard.3075649	0	-	207936344	207940559	0	1	4215	0
chr2	207994044	207994758	B_Cells_Pritchard.3075825	0	.	207994044	207994758	0	1	714	0
chr2	208010953	208013184	REMC_LuminalBreast.95318	0	.	208010953	208013184	0	1	2231	0
chr2	208019110	208020531	REMC_LuminalBreast.95319	0	.	208019110	208020531	0	1	1421	0
chr2	208019699	208021038	B_cells_Cheung.189079	0	.	208019699	208021038	0	1	1339	0
chr2	208035070	208037817	REMC_LuminalBreast.95324	0	.	208035070	208037817	0	1	2747	0
chr2	208039405	208041091	REMC_LuminalBreast.95326	0	.	208039405	208041091	0	1	1686	0
chr2	208041238	208049103	REMC_LuminalBreast.95375	0	.	208041238	208049103	0	1	7865	0
chr2	208049309	208050695	REMC_LuminalBreast.95376	0	.	208049309	208050695	0	1	1386	0
chr2	208052135	208058208	REMC_LuminalBreast.95378	0	.	208052135	208058208	0	1	6073	0
chr2	208056238	208057268	B_cells_Cheung.189097	0	.	208056238	208057268	0	1	1030	0
chr2	208096061	208097304	melanoma_Garraway_short_term_cultures.66853	0	.	208096061	208097304	0	1	1243	0
chr2	208203449	208204191	HIT000059566	0	-	208203449	208204191	0	1	742	0
chr2	208343508	208344153	REMC_BreastStem.47909	0	.	208343508	208344153	0	1	645	0
chr2	208344436	208345775	REMC_BreastStem.47910	0	.	208344436	208345775	0	1	1339	0
chr2	208376563	208378177	REMC_LuminalBreast.95369	0	.	208376563	208378177	0	1	1614	0
chr2	208382648	208384603	REMC_LuminalBreast.95372	0	.	208382648	208384603	0	1	1955	0
chr2	208382917	208385531	REMC_MyoepithelialBreast.88651	0	.	208382917	208385531	0	1	2614	0
chr2	208384900	208389013	REMC_LuminalBreast.95373	0	.	208384900	208389013	0	1	4113	0
chr2	208389107	208391358	REMC_LuminalBreast.95374	0	.	208389107	208391358	0	1	2251	0
chr2	208390359	208390950	B_Cells_Pritchard.3077153	0	-	208390359	208390950	0	1	591	0
chr2	209496601	209498359	H1_polyA+.112256	0	.	209496601	209498359	0	1	1758	0
chr2	209548946	209550877	H1_polyA+.112263	0	.	209548946	209550877	0	1	1931	0
chr2	209641467	209642365	H1_polyA+.112278	0	.	209641467	209642365	0	1	898	0
chr2	209648322	209649093	H1_polyA+.112280	0	.	209648322	209649093	0	1	771	0
chr2	209663753	209671794	H1_polyA+.112287	0	.	209663753	209671794	0	1	8041	0
chr2	209666477	209666940	H1_rRNA-depleted_UCSD_REMC.84493	0	.	209666477	209666940	0	1	463	0
chr2	209669532	209670061	H9_polyA-_Chen.13976	0	.	209669532	209670061	0	1	529	0
chr2	209781786	209782750	H9_polyA-_Chen.13985	0	.	209781786	209782750	0	1	964	0
chr2	209872630	209885621	H9_polyA+.44278	0	+	209872630	209885621	0	2	277,7538	0,5453
chr2	209877009	209899096	H1_polyA+.112297	0	+	209877009	209899096	0	3	497,15011,2728	0,2744,19359
chr2	209879782	209881043	H9_polyA-_Chen.13979	0	.	209879782	209881043	0	1	1261	0
chr2	210805660	210806966	HIT000071259	0	+	210805660	210806966	0	1	1306	0
chr2	210806145	210806880	HIT000390385	0	+	210806145	210806880	0	1	735	0
chr2	210951118	211002380	pHIT000005442	0	+	210951118	211002380	0	4	57,64,135,47	0,11138,12089,51215
chr2	213232245	213232825	B_Cells_Pritchard.3086051	0	.	213232245	213232825	0	1	580	0
chr2	213279749	213281775	HIT000010035	0	-	213279749	213281775	0	1	2026	0
chr2	213290299	213290880	B_cells_Cheung.189693	0	.	213290299	213290880	0	1	581	0
chr2	213290495	213290899	B_Cells_Pritchard.3086293	0	.	213290495	213290899	0	1	404	0
chr2	213294492	213294805	B_cells_Cheung.189697	0	.	213294492	213294805	0	1	313	0
chr2	213294878	213295319	B_cells_Cheung.189698	0	.	213294878	213295319	0	1	441	0
chr2	213307546	213307900	B_cells_Cheung.189700	0	.	213307546	213307900	0	1	354	0
chr2	213372195	213374909	B_cells_Cheung.189708	0	.	213372195	213374909	0	1	2714	0
chr2	213411403	213411910	B_Cells_Pritchard.3086737	0	.	213411403	213411910	0	1	507	0
chr2	213424139	213439161	B_Cells_Pritchard.3086923	0	+	213424139	213439161	0	7	275,770,2740,572,696,2216,1444	0,1670,2878,5809,6981,10992,13578
chr2	213426626	213429699	B_cells_Cheung.189728	0	.	213426626	213429699	0	1	3073	0
chr2	213440265	213441330	B_cells_Cheung.189737	0	.	213440265	213441330	0	1	1065	0
chr2	213440694	213441336	B_Cells_Pritchard.3086789	0	.	213440694	213441336	0	1	642	0
chr2	213441609	213442260	B_cells_Cheung.189738	0	.	213441609	213442260	0	1	651	0
chr2	213441678	213442260	B_Cells_Pritchard.3086793	0	.	213441678	213442260	0	1	582	0
chr2	213486978	213490028	HIT000046636_03	0	-	213486978	213490028	0	1	3050	0
chr2	213507709	213513738	B_cells_Cheung.189770	0	-	213507709	213513738	0	2	1430,4024	0,2005
chr2	213509405	213513738	B_cells_Cheung.189772	0	.	213509405	213513738	0	1	4333	0
chr2	213509608	213510578	prostate_carcinoma.96067	0	.	213509608	213510578	0	1	970	0
chr2	213512529	213513425	B_Cells_Pritchard.3087045	0	.	213512529	213513425	0	1	896	0
chr2	213516333	213517163	B_Cells_Pritchard.3087053	0	.	213516333	213517163	0	1	830	0
chr2	213516872	213517201	B_cells_Cheung.189783	0	.	213516872	213517201	0	1	329	0
chr2	213523907	213525048	B_cells_Cheung.189786	0	.	213523907	213525048	0	1	1141	0
chr2	213523937	213524995	B_Cells_Pritchard.3087061	0	.	213523937	213524995	0	1	1058	0
chr2	213524292	213525170	REMC_MyoepithelialBreast.88711	0	.	213524292	213525170	0	1	878	0
chr2	213531839	213533031	B_Cells_Pritchard.3087083	0	.	213531839	213533031	0	1	1192	0
chr2	213537869	213539154	B_cells_Cheung.189782	0	.	213537869	213539154	0	1	1285	0
chr2	213544101	213544872	B_Cells_Pritchard.3087127	0	.	213544101	213544872	0	1	771	0
chr2	213547142	213549701	B_Cells_Pritchard.3087137	0	.	213547142	213549701	0	1	2559	0
chr2	213547546	213549770	B_cells_Cheung.189808	0	.	213547546	213549770	0	1	2224	0
chr2	213552118	213554250	B_Cells_Pritchard.3087141	0	.	213552118	213554250	0	1	2132	0
chr2	213555756	213562574	B_Cells_Pritchard.3087147	0	+	213555756	213562574	0	1	6818	0
chr2	213555761	213559644	B_cells_Cheung.189815	0	.	213555761	213559644	0	1	3883	0
chr2	213558221	213559261	CD4_Plagnol_activated.63496	0	.	213558221	213559261	0	1	1040	0
chr2	213839112	213840056	B_Cells_Pritchard.3087837	0	.	213839112	213840056	0	1	944	0
chr2	213843058	213844786	B_cells_Cheung.189840	0	.	213843058	213844786	0	1	1728	0
chr2	213849796	213850161	B_Cells_Pritchard.3087873	0	.	213849796	213850161	0	1	365	0
chr2	215269511	215270278	B_Cells_Pritchard.3091171	0	.	215269511	215270278	0	1	767	0
chr2	215272547	215273019	B_Cells_Pritchard.3091187	0	.	215272547	215273019	0	1	472	0
chr2	215385790	215387384	B_cells_Cheung.189998	0	.	215385790	215387384	0	1	1594	0
chr2	215393049	215393676	B_cells_Cheung.190000	0	.	215393049	215393676	0	1	627	0
chr2	215431678	215432173	B_cells_Cheung.190017	0	.	215431678	215432173	0	1	495	0
chr2	215440943	215444762	B_cells_Cheung.190022	0	.	215440943	215444762	0	1	3819	0
chr2	215441974	215442956	B_Cells_Pritchard.3091603	0	.	215441974	215442956	0	1	982	0
chr2	215483643	215484292	B_cells_Cheung.190039	0	.	215483643	215484292	0	1	649	0
chr2	215487803	215493095	B_cells_Cheung.190041	0	.	215487803	215493095	0	1	5292	0
chr2	215493233	215493581	B_cells_Cheung.190042	0	.	215493233	215493581	0	1	348	0
chr2	215804621	215805059	B_Cells_Pritchard.3092559	0	.	215804621	215805059	0	1	438	0
chr2	215804753	215805094	B_cells_Cheung.189952	0	.	215804753	215805094	0	1	341	0
chr2	215877112	215884272	B_Cells_Pritchard.3094803	0	-	215877112	215884272	0	2	395,222	0,6938
chr2	216049634	216053216	ENST00000414756	0	+	216049634	216053216	0	2	64,327	0,3255
chr2	216087485	216087910	A549_Myers.84167	0	.	216087485	216087910	0	1	425	0
chr2	216184292	216214773	MDAMB468_Thompson.23985	0	-	216184292	216214773	0	3	2419,93,576	0,12818,29905
chr2	216191180	216191559	REMC_MyoepithelialBreast.88744	0	.	216191180	216191559	0	1	379	0
chr2	216263210	216263850	HepG2_Caltech_ENCODE.37254	0	.	216263210	216263850	0	1	640	0
chr2	216269903	216270388	HepG2_Caltech_ENCODE.37256	0	.	216269903	216270388	0	1	485	0
chr2	216293143	216293903	HepG2_Caltech_ENCODE.37258	0	.	216293143	216293903	0	1	760	0
chr2	216432882	216435531	REMC_LuminalBreast.95625	0	.	216432882	216435531	0	1	2649	0
chr2	216433803	216434668	REMC_MyoepithelialBreast.88791	0	.	216433803	216434668	0	1	865	0
chr2	216445105	216446764	REMC_LuminalBreast.95629	0	.	216445105	216446764	0	1	1659	0
chr2	216456600	216457525	REMC_MyoepithelialBreast.88793	0	.	216456600	216457525	0	1	925	0
chr2	216473032	216482481	REMC_LuminalBreast.95643	0	.	216473032	216482481	0	1	9449	0
chr2	216476340	216477538	REMC_MyoepithelialBreast.88794	0	.	216476340	216477538	0	1	1198	0
chr2	216482561	216486648	REMC_LuminalBreast.95642	0	.	216482561	216486648	0	1	4087	0
chr2	216487148	216494092	REMC_LuminalBreast.95644	0	.	216487148	216494092	0	1	6944	0
chr2	216491986	216492750	B_Cells_Pritchard.3094097	0	.	216491986	216492750	0	1	764	0
chr2	216494223	216510869	B_Cells_Pritchard.3094141	0	+	216494223	216510869	0	2	401,43	0,16603
chr2	216494223	216495220	B_Cells_Pritchard.3094143	0	-	216494223	216495220	0	1	997	0
chr2	216494240	216495331	REMC_LuminalBreast.95645	0	.	216494240	216495331	0	1	1091	0
chr2	216494471	216495248	H1_polyA+.113398	0	.	216494471	216495248	0	1	777	0
chr2	216494759	216495311	REMC_MyoepithelialBreast.88796	0	.	216494759	216495311	0	1	552	0
chr2	216501034	216502028	H9_polyA+.44329	0	.	216501034	216502028	0	1	994	0
chr2	216501189	216501926	H1_rRNA-depleted_UCSD_REMC.84702	0	.	216501189	216501926	0	1	737	0
chr2	216507175	216509855	REMC_LuminalBreast.95647	0	.	216507175	216509855	0	1	2680	0
chr2	216507369	216508913	REMC_MyoepithelialBreast.88799	0	.	216507369	216508913	0	1	1544	0
chr2	216780307	216782603	REMC_LuminalBreast.95795	0	.	216780307	216782603	0	1	2296	0
chr2	216781150	216781888	REMC_BreastStem.48093	0	.	216781150	216781888	0	1	738	0
chr2	216781197	216781921	MDAMB468_Thompson.24042	0	.	216781197	216781921	0	1	724	0
chr2	216782008	216785114	ZR751_Thompson.23491	0	.	216782008	216785114	0	1	3106	0
chr2	216782084	216786157	CD4_Plagnol_resting.61820	0	.	216782084	216786157	0	1	4073	0
chr2	216782097	216787264	prostate_carcinoma.96241	0	.	216782097	216787264	0	1	5167	0
chr2	216782099	216786397	T47D_Burge_Thompson.28553	0	.	216782099	216786397	0	1	4298	0
chr2	216782100	216786427	NEC_from_H9.73004	0	.	216782100	216786427	0	1	4327	0
chr2	216782188	216786321	CD4_Plagnol_activated.63541	0	.	216782188	216786321	0	1	4133	0
chr2	216782208	216786312	BT20_Thompson.21626	0	.	216782208	216786312	0	1	4104	0
chr2	216782903	216784840	prostate_normal.57578	0	.	216782903	216784840	0	1	1937	0
chr2	216783863	216784650	HeLa_Bartel_WT_12hr.31449	0	.	216783863	216784650	0	1	787	0
chr2	216783878	216784257	CD4_Snyder.72187	0	.	216783878	216784257	0	1	379	0
chr2	216787205	216788240	HeLa_polyA+_Chen.34807	0	.	216787205	216788240	0	1	1035	0
chr2	216787505	216788585	CD4_Plagnol_activated.63540	0	.	216787505	216788585	0	1	1080	0
chr2	216787552	216788214	MDAMB231_Thompson.21639	0	.	216787552	216788214	0	1	662	0
chr2	216787571	216788158	NEC_from_H9.73002	0	.	216787571	216788158	0	1	587	0
chr2	216787590	216788743	prostate_normal.57580	0	.	216787590	216788743	0	1	1153	0
chr2	216787597	216788322	T47D_Burge_Thompson.28555	0	.	216787597	216788322	0	1	725	0
chr2	216787645	216788645	BT20_Thompson.21628	0	.	216787645	216788645	0	1	1000	0
chr2	216807018	216807692	B_Cells_Pritchard.3094889	0	.	216807018	216807692	0	1	674	0
chr2	216808798	216809903	MIP101.67112	0	.	216808798	216809903	0	1	1105	0
chr2	216810676	216812209	REMC_BreastStem.48097	0	.	216810676	216812209	0	1	1533	0
chr2	217066350	217067348	B_Cells_Pritchard.3100851	0	+	217066350	217067348	0	1	998	0
chr2	217066376	217067247	B_cells_Cheung.190158	0	.	217066376	217067247	0	1	871	0
chr2	217068580	217070234	B_cells_Cheung.190160	0	.	217068580	217070234	0	1	1654	0
chr2	217153192	217153640	B_cells_Cheung.190214	0	.	217153192	217153640	0	1	448	0
chr2	217155425	217156193	REMC_MyoepithelialBreast.88826	0	.	217155425	217156193	0	1	768	0
chr2	217155988	217158303	BT474_Burge_Thompson.33778	0	.	217155988	217158303	0	1	2315	0
chr2	217156177	217157528	MIP101.67077	0	.	217156177	217157528	0	1	1351	0
chr2	217156296	217156873	B_cells_Cheung.190218	0	.	217156296	217156873	0	1	577	0
chr2	217163393	217179906	ENST00000449783	0	-	217163393	217179906	0	4	658,60,389,77	0,4758,8210,16436
chr2	217204355	217204712	REMC_MyoepithelialBreast.88810	0	.	217204355	217204712	0	1	357	0
chr2	217204778	217205198	REMC_MyoepithelialBreast.88811	0	.	217204778	217205198	0	1	420	0
chr2	217241985	217242917	REMC_MyoepithelialBreast.88814	0	.	217241985	217242917	0	1	932	0
chr2	217271862	217272582	H1_polyA+.112494	0	.	217271862	217272582	0	1	720	0
chr2	217309463	217309839	B_Cells_Pritchard.3096525	0	.	217309463	217309839	0	1	376	0
chr2	217491356	217491873	B_Cells_Pritchard.3096991	0	.	217491356	217491873	0	1	517	0
chr2	217641501	217642201	brain_AmbionMAQC.43857	0	.	217641501	217642201	0	1	700	0
chr2	217641502	217642178	prostate_carcinoma.96262	0	.	217641502	217642178	0	1	676	0
chr2	217641516	217641974	prostate_normal.57603	0	.	217641516	217641974	0	1	458	0
chr2	217641560	217642303	BT474_Burge_Thompson.33799	0	.	217641560	217642303	0	1	743	0
chr2	217642164	217642882	B_Cells_Pritchard.3097383	0	.	217642164	217642882	0	1	718	0
chr2	217642321	217643025	brain_AmbionMAQC.43858	0	.	217642321	217643025	0	1	704	0
chr2	217642482	217643019	BT474_Burge_Thompson.33800	0	.	217642482	217643019	0	1	537	0
chr2	217678789	217679647	B_cells_Cheung.190231	0	.	217678789	217679647	0	1	858	0
chr2	217698630	217699570	B_cells_Cheung.190233	0	.	217698630	217699570	0	1	940	0
chr2	217772025	217772665	B_cells_Cheung.190242	0	.	217772025	217772665	0	1	640	0
chr2	217786286	217786698	B_cells_Cheung.190247	0	.	217786286	217786698	0	1	412	0
chr2	217802678	217803138	B_cells_Cheung.190255	0	.	217802678	217803138	0	1	460	0
chr2	217816300	217817064	B_Cells_Pritchard.3097909	0	.	217816300	217817064	0	1	764	0
chr2	217816354	217817279	B_cells_Cheung.190259	0	.	217816354	217817279	0	1	925	0
chr2	218348899	218349373	prostate_carcinoma.96278	0	.	218348899	218349373	0	1	474	0
chr2	218358269	218358751	A549_Myers.84241	0	.	218358269	218358751	0	1	482	0
chr2	218367875	218368659	prostate_normal.57873	0	.	218367875	218368659	0	1	784	0
chr2	218367907	218368228	ovary_Raymond.240300	0	.	218367907	218368228	0	1	321	0
chr2	218367944	218368690	melanoma_Garraway_short_term_cultures.67133	0	.	218367944	218368690	0	1	746	0
chr2	218367951	218368526	adipose_Raymond.66069	0	-	218367951	218368526	0	2	295,81	0,494
chr2	218367987	218368517	kidney_Raymond.97223	0	.	218367987	218368517	0	1	530	0
chr2	218368029	218368543	A549_Myers.84244	0	.	218368029	218368543	0	1	514	0
chr2	218368041	218368510	colon_Raymond.118359	0	-	218368041	218368510	0	3	116,141,65	0,118,404
chr2	218368061	218369253	REMC_MyoepithelialBreast.88834	0	.	218368061	218369253	0	1	1192	0
chr2	218368166	218369381	REMC_BreastStem.48137	0	.	218368166	218369381	0	1	1215	0
chr2	218754054	218755563	REMC_BreastStem.48140	0	.	218754054	218755563	0	1	1509	0
chr2	218760300	218761547	REMC_BreastStem.48238	0	.	218760300	218761547	0	1	1247	0
chr2	218784234	218784631	B_Cells_Pritchard.3100817	0	.	218784234	218784631	0	1	397	0
chr2	218986721	218987713	REMC_LuminalBreast.95791	0	.	218986721	218987713	0	1	992	0
chr2	219334354	219337748	melanoma_Garraway_short_term_cultures.67220	0	.	219334354	219337748	0	1	3394	0
chr2	219340854	219341325	REMC_LuminalBreast.95888	0	.	219340854	219341325	0	1	471	0
chr2	219342435	219342769	REMC_LuminalBreast.95890	0	.	219342435	219342769	0	1	334	0
chr2	219344770	219352413	REMC_LuminalBreast.95893	0	.	219344770	219352413	0	1	7643	0
chr2	219344779	219345481	REMC_BreastStem.48185	0	.	219344779	219345481	0	1	702	0
chr2	219345856	219346427	H1_polyA+.112570	0	.	219345856	219346427	0	1	571	0
chr2	219389337	219390131	prostate_carcinoma.96507	0	.	219389337	219390131	0	1	794	0
chr2	219389386	219390104	B_Cells_Pritchard.3101755	0	.	219389386	219390104	0	1	718	0
chr2	219389392	219390111	melanoma_Garraway_short_term_cultures.67246	0	.	219389392	219390111	0	1	719	0
chr2	219391141	219392199	H1_polyA+.112578	0	.	219391141	219392199	0	1	1058	0
chr2	219428487	219429029	prostate_carcinoma.96483	0	.	219428487	219429029	0	1	542	0
chr2	219429477	219430310	prostate_carcinoma.96484	0	.	219429477	219430310	0	1	833	0
chr2	219448274	219452032	B_cells_Cheung.190588	0	.	219448274	219452032	0	1	3758	0
chr2	219448452	219451864	prostate_normal.57739	0	.	219448452	219451864	0	1	3412	0
chr2	219473362	219476116	B_cells_Cheung.190617	0	.	219473362	219476116	0	1	2754	0
chr2	219481679	219482380	A549_Myers.84400	0	.	219481679	219482380	0	1	701	0
chr2	219489690	219492433	H1_polyA+.112589	0	.	219489690	219492433	0	1	2743	0
chr2	219496213	219502593	H1_polyA+.112592	0	.	219496213	219502593	0	1	6380	0
chr2	219496213	219502593	H1_polyA+.112591	0	+	219496213	219502593	0	2	2074,3572	0,2808
chr2	219496313	219496763	B_Cells_Pritchard.3101915	0	.	219496313	219496763	0	1	450	0
chr2	219496633	219497514	B_cells_Cheung.190634	0	.	219496633	219497514	0	1	881	0
chr2	219497700	219502632	B_Cells_Pritchard.3101923	0	.	219497700	219502632	0	1	4932	0
chr2	219502929	219503731	B_cells_Cheung.190639	0	.	219502929	219503731	0	1	802	0
chr2	219502966	219503714	B_Cells_Pritchard.3101925	0	.	219502966	219503714	0	1	748	0
chr2	219515373	219516033	H1_polyA+.112595	0	.	219515373	219516033	0	1	660	0
chr2	219523466	219524157	H1_polyA+.112598	0	.	219523466	219524157	0	1	691	0
chr2	219527431	219528655	melanoma_Garraway_short_term_cultures.67256	0	.	219527431	219528655	0	1	1224	0
chr2	219527853	219528868	brain_AmbionMAQC.43919	0	.	219527853	219528868	0	1	1015	0
chr2	219549153	219552594	Rinn_00005020	0	+	219549153	219552594	0	2	1184,2148	0,1293
chr2	219549249	219552641	HIT000099076	0	+	219549249	219552641	0	2	639,2194	0,1198
chr2	219549249	219552626	ENST00000432733	0	+	219549249	219552626	0	2	639,2179	0,1198
chr2	219571093	219574597	prostate_normal.57749	0	.	219571093	219574597	0	1	3504	0
chr2	219572279	219572916	BT474_Burge_Thompson.33838	0	.	219572279	219572916	0	1	637	0
chr2	219572509	219572872	colon_Raymond.118175	0	.	219572509	219572872	0	1	363	0
chr2	219572572	219572872	lung_Raymond.86459	0	.	219572572	219572872	0	1	300	0
chr2	219623315	219624165	prostate_carcinoma.96515	0	.	219623315	219624165	0	1	850	0
chr2	219635290	219637684	REMC_LuminalBreast.95854	0	.	219635290	219637684	0	1	2394	0
chr2	219635971	219639917	H1_polyA+.112642	0	.	219635971	219639917	0	1	3946	0
chr2	219636952	219637604	REMC_MyoepithelialBreast.88964	0	.	219636952	219637604	0	1	652	0
chr2	219636958	219638882	MIP101.67184	0	.	219636958	219638882	0	1	1924	0
chr2	219639995	219643351	REMC_MyoepithelialBreast.88967	0	.	219639995	219643351	0	1	3356	0
chr2	219640030	219641436	H1_polyA+.112643	0	.	219640030	219641436	0	1	1406	0
chr2	219640357	219641447	MIP101.67185	0	.	219640357	219641447	0	1	1090	0
chr2	219640364	219641454	B_Cells_Pritchard.3102451	0	.	219640364	219641454	0	1	1090	0
chr2	219640475	219641305	prostate_carcinoma.96523	0	.	219640475	219641305	0	1	830	0
chr2	219643077	219643478	H1_rRNA-depleted_UCSD_REMC.84927	0	.	219643077	219643478	0	1	401	0
chr2	219907630	219908616	B_Cells_Pritchard.3103073	0	.	219907630	219908616	0	1	986	0
chr2	219922163	219923734	REMC_MyoepithelialBreast.88998	0	.	219922163	219923734	0	1	1571	0
chr2	219931144	219931470	A549_Myers.84467	0	.	219931144	219931470	0	1	326	0
chr2	219935049	219935851	MIP101.67204	0	.	219935049	219935851	0	1	802	0
chr2	219935059	219935392	B_cells_Cheung.190672	0	.	219935059	219935392	0	1	333	0
chr2	219935065	219935778	prostate_normal.57773	0	.	219935065	219935778	0	1	713	0
chr2	219935066	219936817	H1_polyA+.112656	0	.	219935066	219936817	0	1	1751	0
chr2	219935124	219936431	B_Cells_Pritchard.3103187	0	+	219935124	219936431	0	1	1307	0
chr2	219935142	219935730	CD4_Plagnol_resting.61975	0	.	219935142	219935730	0	1	588	0
chr2	219936089	219936698	B_cells_Cheung.190674	0	.	219936089	219936698	0	1	609	0
chr2	219936129	219936851	REMC_BreastStem.48221	0	.	219936129	219936851	0	1	722	0
chr2	219937225	219937678	B_cells_Cheung.190675	0	.	219937225	219937678	0	1	453	0
chr2	219940354	219940750	B_cells_Cheung.190677	0	.	219940354	219940750	0	1	396	0
chr2	219978421	219978841	A549_Myers.84473	0	.	219978421	219978841	0	1	420	0
chr2	220082545	220083397	REMC_MyoepithelialBreast.89125	0	.	220082545	220083397	0	1	852	0
chr2	220217569	220219214	H1_polyA+.112699	0	.	220217569	220219214	0	1	1645	0
chr2	220258303	220258822	REMC_LuminalBreast.95955	0	.	220258303	220258822	0	1	519	0
chr2	220258346	220260311	HIT000013348	0	+	220258346	220260311	0	1	1965	0
chr2	220258467	220258823	B_Cells_Pritchard.3104087	0	.	220258467	220258823	0	1	356	0
chr2	220261658	220263641	MIP101.67229	0	.	220261658	220263641	0	1	1983	0
chr2	220261866	220262459	REMC_MyoepithelialBreast.89068	0	.	220261866	220262459	0	1	593	0
chr2	220263946	220265206	MIP101.67230	0	.	220263946	220265206	0	1	1260	0
chr2	220280083	220281862	MIP101.67237	0	.	220280083	220281862	0	1	1779	0
chr2	220287577	220289890	MIP101.67242	0	.	220287577	220289890	0	1	2313	0
chr2	220312878	220313789	MIP101.67252	0	.	220312878	220313789	0	1	911	0
chr2	220339118	220343507	MIP101.67262	0	.	220339118	220343507	0	1	4389	0
chr2	220343688	220345928	MIP101.67263	0	.	220343688	220345928	0	1	2240	0
chr2	220343688	220352964	MIP101.67264	0	+	220343688	220352964	0	2	2229,183	0,9093
chr2	220385009	220386457	MIP101.67272	0	.	220385009	220386457	0	1	1448	0
chr2	220385756	220386313	B_Cells_Pritchard.3104585	0	.	220385756	220386313	0	1	557	0
chr2	220392633	220393929	MIP101.67273	0	.	220392633	220393929	0	1	1296	0
chr2	220403751	220404770	MIP101.67277	0	.	220403751	220404770	0	1	1019	0
chr2	220412441	220412838	MIP101.67281	0	.	220412441	220412838	0	1	397	0
chr2	220420746	220421790	MIP101.67285	0	.	220420746	220421790	0	1	1044	0
chr2	220424584	220428134	MIP101.67288	0	.	220424584	220428134	0	1	3550	0
chr2	220424603	220465119	HIT000386053	0	+	220424603	220465119	0	2	3494,128	0,40388
chr2	220428457	220428865	B_cells_Cheung.190738	0	.	220428457	220428865	0	1	408	0
chr2	220433916	220434815	MIP101.67291	0	.	220433916	220434815	0	1	899	0
chr2	220437875	220439487	MIP101.67293	0	.	220437875	220439487	0	1	1612	0
chr2	220449395	220450029	MIP101.67298	0	.	220449395	220450029	0	1	634	0
chr2	220458362	220459588	MIP101.67300	0	.	220458362	220459588	0	1	1226	0
chr2	220602084	220604148	MIP101.67313	0	.	220602084	220604148	0	1	2064	0
chr2	220605724	220606826	MIP101.67315	0	.	220605724	220606826	0	1	1102	0
chr2	220648286	220651627	MIP101.67323	0	.	220648286	220651627	0	1	3341	0
chr2	220656234	220658691	MIP101.67326	0	.	220656234	220658691	0	1	2457	0
chr2	220669336	220672968	MIP101.67324	0	.	220669336	220672968	0	1	3632	0
chr2	220674170	220678894	MIP101.67333	0	.	220674170	220678894	0	1	4724	0
chr2	220727024	220730753	MIP101.67341	0	.	220727024	220730753	0	1	3729	0
chr2	220732363	220733053	MIP101.67343	0	.	220732363	220733053	0	1	690	0
chr2	220733410	220736200	MIP101.67344	0	.	220733410	220736200	0	1	2790	0
chr2	220736353	220737448	MIP101.67345	0	.	220736353	220737448	0	1	1095	0
chr2	221350361	221351929	MCF7_Burge_Thompson.31142	0	.	221350361	221351929	0	1	1568	0
chr2	221383528	221426626	Rinn_00005339	0	-	221383528	221426626	0	3	395,129,340	0,2238,42758
chr2	222271624	222273455	Rinn_00004037	0	+	222271624	222273455	0	3	159,184,119	0,1426,1712
chr2	222448714	222450815	H1_polyA+.112724	0	.	222448714	222450815	0	1	2101	0
chr2	222479086	222479632	H1_polyA+.112725	0	.	222479086	222479632	0	1	546	0
chr2	222540965	222543198	H1_polyA+.112731	0	.	222540965	222543198	0	1	2233	0
chr2	222889218	222891959	REMC_LuminalBreast.95960	0	.	222889218	222891959	0	1	2741	0
chr2	222889637	222894685	XR_015854	0	+	222889637	222894685	0	3	2108,588,257	0,2108,4791
chr2	222889637	222893680	XR_041304	0	+	222889637	222893680	0	3	2108,318,255	0,2108,3788
chr2	222889848	222895426	B_Cells_Pritchard.3109803	0	+	222889848	222895426	0	1	5578	0
chr2	222890224	222892465	MIP101.67357	0	.	222890224	222892465	0	1	2241	0
chr2	222890224	222893175	B_cells_Cheung.190791	0	.	222890224	222893175	0	1	2951	0
chr2	222890224	222894672	B_cells_Cheung.190790	0	+	222890224	222894672	0	2	2109,243	0,4205
chr2	222890232	222891781	HIT000272755	0	-	222890232	222891781	0	1	1549	0
chr2	222891023	222894672	brain_AmbionMAQC.43988	0	.	222891023	222894672	0	1	3649	0
chr2	222891029	222894672	MCF7_Burge_Thompson.31153	0	+	222891029	222894672	0	2	1304,243	0,3400
chr2	222891203	222891566	A549_Myers.84571	0	.	222891203	222891566	0	1	363	0
chr2	222891368	222893524	colon_Burge.36969	0	+	222891368	222893524	0	2	695,98	0,2058
chr2	222891433	222894703	HIT000086994	0	+	222891433	222894703	0	2	900,274	0,2996
chr2	222891711	222894689	MIP101.67359	0	+	222891711	222894689	0	2	622,260	0,2718
chr2	222891897	222892900	A549_Myers.84572	0	.	222891897	222892900	0	1	1003	0
chr2	222891990	222892363	pHIT000100663	0	-	222891990	222892363	0	1	373	0
chr2	222892743	222894689	MIP101.67358	0	.	222892743	222894689	0	1	1946	0
chr2	222893244	222893572	testes_Burge.51932	0	.	222893244	222893572	0	1	328	0
chr2	222893248	222894672	B_cells_Cheung.190792	0	.	222893248	222894672	0	1	1424	0
chr2	222893391	222894611	melanoma_Garraway_short_term_cultures.67369	0	.	222893391	222894611	0	1	1220	0
chr2	222893436	222894843	REMC_LuminalBreast.95961	0	.	222893436	222894843	0	1	1407	0
chr2	222893636	222894622	ENST00000424010	0	+	222893636	222894622	0	2	156,193	0,793
chr2	222928878	222929602	B_Cells_Pritchard.3109893	0	.	222928878	222929602	0	1	724	0
chr2	223135929	223136528	prostate_normal.57808	0	.	223135929	223136528	0	1	599	0
chr2	223136171	223136544	A549_Myers.84581	0	.	223136171	223136544	0	1	373	0
chr2	223291606	223291970	B_cells_Cheung.190839	0	.	223291606	223291970	0	1	364	0
chr2	223293474	223294697	REMC_LuminalBreast.95984	0	.	223293474	223294697	0	1	1223	0
chr2	223313454	223345702	Rinn_00004041	0	+	223313454	223345702	0	2	40,335	0,31913
chr2	223345254	223346273	B_Cells_Pritchard.3110939	0	.	223345254	223346273	0	1	1019	0
chr2	223345371	223346189	liver_polyA+.127428	0	.	223345371	223346189	0	1	818	0
chr2	223405775	223416198	HepG2_Caltech_ENCODE.37456	0	-	223405775	223416198	0	2	663,308	0,10115
chr2	223525877	223531114	REMC_LuminalBreast.96005	0	.	223525877	223531114	0	1	5237	0
chr2	223562950	223563906	REMC_MyoepithelialBreast.89128	0	.	223562950	223563906	0	1	956	0
chr2	223563044	223564198	REMC_LuminalBreast.96008	0	.	223563044	223564198	0	1	1154	0
chr2	224419308	224423335	melanoma_Garraway_short_term_cultures.67485	0	.	224419308	224423335	0	1	4027	0
chr2	224419400	224423349	REMC_BreastStem.48485	0	.	224419400	224423349	0	1	3949	0
chr2	224419699	224425050	REMC_MyoepithelialBreast.89178	0	.	224419699	224425050	0	1	5351	0
chr2	224420188	224423386	HepG2_Caltech_ENCODE.37481	0	.	224420188	224423386	0	1	3198	0
chr2	224420250	224423118	H1_polyA+.112888	0	.	224420250	224423118	0	1	2868	0
chr2	224420817	224423357	B_cells_Cheung.190914	0	.	224420817	224423357	0	1	2540	0
chr2	224424589	224428050	REMC_BreastStem.48487	0	.	224424589	224428050	0	1	3461	0
chr2	224426248	224428170	HepG2_Caltech_ENCODE.37484	0	.	224426248	224428170	0	1	1922	0
chr2	224526415	224526818	B_cells_Cheung.190991	0	.	224526415	224526818	0	1	403	0
chr2	224979987	224980964	H1_polyA+.112870	0	.	224979987	224980964	0	1	977	0
chr2	225001989	225005680	H1_polyA+.112884	0	.	225001989	225005680	0	1	3691	0
chr2	225004977	225005385	H9_polyA+.44609	0	.	225004977	225005385	0	1	408	0
chr2	225015217	225015722	A549_Myers.84651	0	.	225015217	225015722	0	1	505	0
chr2	225015376	225016838	REMC_LuminalBreast.96074	0	.	225015376	225016838	0	1	1462	0
chr2	225029378	225031553	REMC_MyoepithelialBreast.89172	0	.	225029378	225031553	0	1	2175	0
chr2	225032290	225033372	REMC_MyoepithelialBreast.89173	0	.	225032290	225033372	0	1	1082	0
chr2	225163952	225164762	B_Cells_Pritchard.3115083	0	.	225163952	225164762	0	1	810	0
chr2	225282933	225289326	pHIT000100677	0	-	225282933	225289326	0	2	247,235	0,6158
chr2	225310605	225311610	MIP101.67504	0	.	225310605	225311610	0	1	1005	0
chr2	225331311	225333014	MIP101.67507	0	.	225331311	225333014	0	1	1703	0
chr2	225331311	225332160	B_Cells_Pritchard.3119719	0	+	225331311	225332160	0	1	849	0
chr2	225331323	225331950	B_cells_Cheung.190998	0	.	225331323	225331950	0	1	627	0
chr2	225332319	225334257	B_cells_Cheung.191000	0	.	225332319	225334257	0	1	1938	0
chr2	225333022	225333781	CD4_Plagnol_resting.62096	0	.	225333022	225333781	0	1	759	0
chr2	225333048	225333880	melanoma_Garraway_short_term_cultures.67540	0	.	225333048	225333880	0	1	832	0
chr2	225333079	225334236	CD4_Plagnol_activated.63895	0	.	225333079	225334236	0	1	1157	0
chr2	225833725	225834170	B_cells_Cheung.191053	0	.	225833725	225834170	0	1	445	0
chr2	225898658	225899124	B_cells_Cheung.191069	0	.	225898658	225899124	0	1	466	0
chr2	225969540	225970903	B_cells_Cheung.191081	0	.	225969540	225970903	0	1	1363	0
chr2	226228255	226230074	MIP101.67518	0	.	226228255	226230074	0	1	1819	0
chr2	226230365	226231590	MIP101.67519	0	.	226230365	226231590	0	1	1225	0
chr2	226459333	226460589	B_Cells_Pritchard.3117389	0	.	226459333	226460589	0	1	1256	0
chr2	226459336	226459700	B_cells_Cheung.191093	0	.	226459336	226459700	0	1	364	0
chr2	226603598	226604510	HepG2_Caltech_ENCODE.37498	0	.	226603598	226604510	0	1	912	0
chr2	226604105	226604538	A549_Myers.84676	0	.	226604105	226604538	0	1	433	0
chr2	226715753	226753053	HIT000089474	0	+	226715753	226753053	0	7	174,118,157,55,69,99,294	0,2813,21594,22375,31953,36241,37006
chr2	226928508	226928874	ZR751_Thompson.23649	0	.	226928508	226928874	0	1	366	0
chr2	226928546	226928929	BT474_Burge_Thompson.33915	0	.	226928546	226928929	0	1	383	0
chr2	226976286	227009739	pHIT000100684	0	+	226976286	227009739	0	4	83,179,87,95	0,15579,21956,33358
chr2	227288419	227288863	B_Cells_Pritchard.3119005	0	.	227288419	227288863	0	1	444	0
chr2	227288472	227288792	prostate_carcinoma.96827	0	.	227288472	227288792	0	1	320	0
chr2	227288515	227288833	A549_Myers.84678	0	.	227288515	227288833	0	1	318	0
chr2	227293025	227294385	MCF7_Burge_Thompson.32200	0	.	227293025	227294385	0	1	1360	0
chr2	227298567	227299630	melanoma_Garraway_short_term_cultures.67586	0	.	227298567	227299630	0	1	1063	0
chr2	227300635	227302378	MCF7_Burge_Thompson.32203	0	.	227300635	227302378	0	1	1743	0
chr2	227373096	227374789	MeWo_Garraway.35883	0	.	227373096	227374789	0	1	1693	0
chr2	227373125	227374929	REMC_MyoepithelialBreast.89240	0	.	227373125	227374929	0	1	1804	0
chr2	227373256	227374566	T47D_Burge_Thompson.28673	0	.	227373256	227374566	0	1	1310	0
chr2	227373273	227375169	melanoma_Garraway_short_term_cultures.67595	0	.	227373273	227375169	0	1	1896	0
chr2	227373725	227374501	B_Cells_Pritchard.3119193	0	.	227373725	227374501	0	1	776	0
chr2	227373976	227375322	HepG2_Caltech_ENCODE.37508	0	.	227373976	227375322	0	1	1346	0
chr2	227374082	227374409	liver_polyA+.127602	0	.	227374082	227374409	0	1	327	0
chr2	227374162	227374499	IMR90_UCSD_REMC.48238	0	-	227374162	227374499	0	1	337	0
chr2	227377116	227378149	ZR751_Thompson.23658	0	.	227377116	227378149	0	1	1033	0
chr2	227378441	227379989	melanoma_Garraway_short_term_cultures.67597	0	.	227378441	227379989	0	1	1548	0
chr2	227378792	227380235	prostate_carcinoma.96879	0	.	227378792	227380235	0	1	1443	0
chr2	227378821	227380190	prostate_normal.57878	0	.	227378821	227380190	0	1	1369	0
chr2	227379108	227380060	BT474_Burge_Thompson.33928	0	.	227379108	227380060	0	1	952	0
chr2	227381766	227386659	REMC_LuminalBreast.96150	0	.	227381766	227386659	0	1	4893	0
chr2	227382893	227386726	HIT000047147	0	+	227382893	227386726	0	1	3833	0
chr2	227383548	227384381	ZR751_Thompson.23659	0	.	227383548	227384381	0	1	833	0
chr2	227383562	227384420	MDAMB231_Thompson.21827	0	.	227383562	227384420	0	1	858	0
chr2	227383577	227384372	prostate_normal.57880	0	.	227383577	227384372	0	1	795	0
chr2	227383707	227384383	melanoma_Garraway_short_term_cultures.67598	0	.	227383707	227384383	0	1	676	0
chr2	227401847	227405796	B_cells_Cheung.191114	0	.	227401847	227405796	0	1	3949	0
chr2	227401857	227408200	B_Cells_Pritchard.3119309	0	-	227401857	227408200	0	7	1895,81,102,111,16,18,75	0,1989,2604,2900,3057,6115,6268
chr2	227401857	227405741	B_Cells_Pritchard.3119311	0	+	227401857	227405741	0	1	3884	0
chr2	227405077	227405747	MIP101.67528	0	.	227405077	227405747	0	1	670	0
chr2	227956454	227972553	pHIT000100689	0	+	227956454	227972553	0	3	89,124,157	0,11156,15942
chr2	227956454	227984589	pHIT000005695	0	+	227956454	227984589	0	4	89,124,157,71	0,11156,15942,28064
chr2	227980293	227981218	REMC_LuminalBreast.96190	0	.	227980293	227981218	0	1	925	0
chr2	228019118	228019721	B_cells_Cheung.191312	0	.	228019118	228019721	0	1	603	0
chr2	228020106	228021957	B_cells_Cheung.191314	0	.	228020106	228021957	0	1	1851	0
chr2	228023170	228038607	B_Cells_Pritchard.3120551	0	-	228023170	228038607	0	2	1690,3978	0,11459
chr2	228032698	228034310	B_cells_Cheung.191325	0	.	228032698	228034310	0	1	1612	0
chr2	228034392	228038614	B_cells_Cheung.191326	0	.	228034392	228038614	0	1	4222	0
chr2	228142672	228148545	REMC_MyoepithelialBreast.89374	0	.	228142672	228148545	0	1	5873	0
chr2	228145081	228147212	B_cells_Cheung.191332	0	.	228145081	228147212	0	1	2131	0
chr2	228145090	228147145	B_Cells_Pritchard.3121051	0	.	228145090	228147145	0	1	2055	0
chr2	228146253	228147351	REMC_BreastStem.48325	0	.	228146253	228147351	0	1	1098	0
chr2	228156030	228159070	REMC_MyoepithelialBreast.89378	0	.	228156030	228159070	0	1	3040	0
chr2	228172162	228174732	REMC_LuminalBreast.96337	0	.	228172162	228174732	0	1	2570	0
chr2	228177361	228179580	REMC_LuminalBreast.96339	0	.	228177361	228179580	0	1	2219	0
chr2	228177755	228178999	REMC_MyoepithelialBreast.89386	0	.	228177755	228178999	0	1	1244	0
chr2	228340753	228341266	A549_Myers.84808	0	.	228340753	228341266	0	1	513	0
chr2	228353736	228354186	B_Cells_Pritchard.3121631	0	.	228353736	228354186	0	1	450	0
chr2	228824536	228825193	B_Cells_Pritchard.3122755	0	.	228824536	228825193	0	1	657	0
chr2	229256495	229257540	Rinn_00003506	0	-	229256495	229257540	0	2	132,297	0,748
chr2	229407565	229408135	HIT000067195	0	-	229407565	229408135	0	1	570	0
chr2	229457708	229458606	REMC_BreastStem.48332	0	.	229457708	229458606	0	1	898	0
chr2	229467716	229469569	REMC_BreastStem.48363	0	-	229467716	229469569	0	2	1295,150	0,1703
chr2	229467989	229468583	ovary_Raymond.242342	0	.	229467989	229468583	0	1	594	0
chr2	229468013	229468553	lung_Raymond.86795	0	.	229468013	229468553	0	1	540	0
chr2	229468123	229468551	adipose_Raymond.66318	0	.	229468123	229468551	0	1	428	0
chr2	229468187	229469827	prostate_carcinoma.96965	0	.	229468187	229469827	0	1	1640	0
chr2	229468279	229469242	liver_polyA+.127748	0	.	229468279	229469242	0	1	963	0
chr2	229468362	229469242	kidney_Gilad.82698	0	.	229468362	229469242	0	1	880	0
chr2	229470168	229471103	liver_polyA+.127752	0	+	229470168	229471103	0	2	310,199	0,736
chr2	229470332	229471279	prostate_carcinoma.96966	0	.	229470332	229471279	0	1	947	0
chr2	229470377	229471524	ovary_Raymond.242344	0	.	229470377	229471524	0	1	1147	0
chr2	229594533	229595233	REMC_BreastStem.48435	0	.	229594533	229595233	0	1	700	0
chr2	230288003	230288417	pHIT000005711	0	+	230288003	230288417	0	1	414	0
chr2	230299803	230300947	REMC_LuminalBreast.96246	0	.	230299803	230300947	0	1	1144	0
chr2	230305808	230314744	REMC_LuminalBreast.96248	0	.	230305808	230314744	0	1	8936	0
chr2	230312365	230314346	REMC_BreastStem.48380	0	.	230312365	230314346	0	1	1981	0
chr2	230312976	230313993	REMC_MyoepithelialBreast.89468	0	.	230312976	230313993	0	1	1017	0
chr2	230321660	230335517	REMC_LuminalBreast.96250	0	.	230321660	230335517	0	1	13857	0
chr2	230326676	230327493	melanoma_Garraway_short_term_cultures.67659	0	.	230326676	230327493	0	1	817	0
chr2	230326809	230327451	REMC_MyoepithelialBreast.89473	0	.	230326809	230327451	0	1	642	0
chr2	230326813	230327446	B_Cells_Pritchard.3125853	0	.	230326813	230327446	0	1	633	0
chr2	230326817	230327513	B_cells_Cheung.191424	0	.	230326817	230327513	0	1	696	0
chr2	230335681	230336693	B_cells_Cheung.191431	0	.	230335681	230336693	0	1	1012	0
chr2	230335841	230336440	REMC_MyoepithelialBreast.89476	0	.	230335841	230336440	0	1	599	0
chr2	230587677	230589535	B_cells_Cheung.191484	0	.	230587677	230589535	0	1	1858	0
chr2	230587695	230589479	REMC_LuminalBreast.96291	0	.	230587695	230589479	0	1	1784	0
chr2	230736516	230737165	B_Cells_Pritchard.3126783	0	.	230736516	230737165	0	1	649	0
chr2	230979332	230988038	prostate_carcinoma.97044	0	+	230979332	230988038	0	2	1258,833	0,7873
chr2	230983993	230986836	B_Cells_Pritchard.3127263	0	.	230983993	230986836	0	1	2843	0
chr2	230985566	230986036	H1_polyA+.113085	0	.	230985566	230986036	0	1	470	0
chr2	230986849	230987621	REMC_LuminalBreast.96345	0	.	230986849	230987621	0	1	772	0
chr2	230986982	230987608	HepG2_Caltech_ENCODE.37569	0	.	230986982	230987608	0	1	626	0
chr2	231125550	231127155	REMC_LuminalBreast.96341	0	.	231125550	231127155	0	1	1605	0
chr2	231128493	231129393	B_cells_Cheung.191590	0	.	231128493	231129393	0	1	900	0
chr2	231130158	231131230	B_cells_Cheung.191592	0	.	231130158	231131230	0	1	1072	0
chr2	231139730	231140917	B_cells_Cheung.191600	0	.	231139730	231140917	0	1	1187	0
chr2	231141784	231144885	B_cells_Cheung.191603	0	.	231141784	231144885	0	1	3101	0
chr2	231145280	231145692	B_cells_Cheung.191605	0	.	231145280	231145692	0	1	412	0
chr2	231158985	231159952	Rinn_00004610	0	-	231158985	231159952	0	2	306,348	0,619
chr2	231164687	231165335	B_cells_Cheung.191618	0	.	231164687	231165335	0	1	648	0
chr2	231164725	231165236	B_Cells_Pritchard.3127607	0	-	231164725	231165236	0	1	511	0
chr2	231169665	231170098	B_cells_Cheung.191621	0	.	231169665	231170098	0	1	433	0
chr2	231173349	231173795	B_cells_Cheung.191623	0	.	231173349	231173795	0	1	446	0
chr2	231173852	231174378	B_cells_Cheung.191624	0	.	231173852	231174378	0	1	526	0
chr2	231175498	231175988	B_cells_Cheung.191626	0	.	231175498	231175988	0	1	490	0
chr2	231175988	231176402	B_cells_Cheung.191627	0	.	231175988	231176402	0	1	414	0
chr2	231224691	231225324	B_cells_Cheung.191636	0	.	231224691	231225324	0	1	633	0
chr2	231226694	231229371	B_cells_Cheung.191637	0	.	231226694	231229371	0	1	2677	0
chr2	231226735	231232793	B_Cells_Pritchard.3127793	0	-	231226735	231232793	0	3	1151,1879,1369	0,2719,4689
chr2	231227522	231235757	B_Cells_Pritchard.3127795	0	+	231227522	231235757	0	4	359,27,2905,420	0,770,1931,7815
chr2	231229846	231230170	K562.44813	0	.	231229846	231230170	0	1	324	0
chr2	231231408	231232853	B_cells_Cheung.191639	0	.	231231408	231232853	0	1	1445	0
chr2	231232917	231234244	B_cells_Cheung.191641	0	.	231232917	231234244	0	1	1327	0
chr2	231235648	231238359	B_cells_Cheung.191644	0	.	231235648	231238359	0	1	2711	0
chr2	231236951	231238377	B_Cells_Pritchard.3127799	0	+	231236951	231238377	0	1	1426	0
chr2	231241122	231241721	B_cells_Cheung.191646	0	.	231241122	231241721	0	1	599	0
chr2	231263024	231263771	REMC_LuminalBreast.96343	0	.	231263024	231263771	0	1	747	0
chr2	231263025	231263944	MDAMB468_Thompson.24196	0	.	231263025	231263944	0	1	919	0
chr2	231263034	231264168	B_cells_Cheung.191648	0	.	231263034	231264168	0	1	1134	0
chr2	231263072	231264051	BT20_Thompson.21802	0	.	231263072	231264051	0	1	979	0
chr2	231263878	231273488	Rinn_00002780	0	-	231263878	231273488	0	4	1314,697,394,208	0,3630,5382,9402
chr2	231263879	231273488	HIT000011630	0	-	231263879	231273488	0	4	1313,696,393,207	0,3630,5382,9402
chr2	231263879	231273488	ENST00000415174	0	-	231263879	231273488	0	4	1313,696,393,207	0,3630,5382,9402
chr2	231264007	231264937	MDAMB468_Thompson.24194	0	.	231264007	231264937	0	1	930	0
chr2	231264233	231265427	MIP101.67696	0	.	231264233	231265427	0	1	1194	0
chr2	231276921	231277497	B_cells_Cheung.191651	0	.	231276921	231277497	0	1	576	0
chr2	231280713	231281746	B_Cells_Pritchard.3127981	0	-	231280713	231281746	0	1	1033	0
chr2	231280788	231281803	B_cells_Cheung.191654	0	.	231280788	231281803	0	1	1015	0
chr2	231281335	231281688	prostate_carcinoma.97062	0	.	231281335	231281688	0	1	353	0
chr2	231282255	231282801	B_cells_Cheung.191655	0	.	231282255	231282801	0	1	546	0
chr2	231284049	231284786	K562.44817	0	.	231284049	231284786	0	1	737	0
chr2	231284231	231284709	prostate_carcinoma.97064	0	.	231284231	231284709	0	1	478	0
chr2	231459114	231459911	B_cells_Cheung.191686	0	.	231459114	231459911	0	1	797	0
chr2	231459503	231477475	Rinn_00002732	0	+	231459503	231477475	0	4	425,209,1133,129	0,8852,9413,17843
chr2	231459503	231470050	Rinn_00003123	0	+	231459503	231470050	0	3	425,209,1134	0,8852,9413
chr2	231459504	231470050	ENST00000415628	0	+	231459504	231470050	0	3	424,208,1133	0,8852,9413
chr2	231459504	231477521	HIT000097748	0	+	231459504	231477521	0	4	424,208,1132,174	0,8852,9413,17843
chr2	231460836	231464148	B_Cells_Pritchard.3128463	0	+	231460836	231464148	0	2	313,2388	0,924
chr2	231461853	231465050	B_cells_Cheung.191688	0	.	231461853	231465050	0	1	3197	0
chr2	231466552	231468039	B_cells_Cheung.191690	0	.	231466552	231468039	0	1	1487	0
chr2	231466716	231468022	B_Cells_Pritchard.3128473	0	.	231466716	231468022	0	1	1306	0
chr2	231469455	231470287	B_cells_Cheung.191693	0	.	231469455	231470287	0	1	832	0
chr2	231470615	231472753	B_cells_Cheung.191694	0	.	231470615	231472753	0	1	2138	0
chr2	231471618	231472078	B_Cells_Pritchard.3128489	0	.	231471618	231472078	0	1	460	0
chr2	231472824	231474685	B_cells_Cheung.191695	0	.	231472824	231474685	0	1	1861	0
chr2	231478269	231479255	B_Cells_Pritchard.3203773	0	+	231478269	231479255	0	1	986	0
chr2	231535209	231536698	B_Cells_Pritchard.3128621	0	.	231535209	231536698	0	1	1489	0
chr2	231538280	231539246	B_Cells_Pritchard.3128627	0	.	231538280	231539246	0	1	966	0
chr2	231538465	231539301	B_cells_Cheung.191744	0	.	231538465	231539301	0	1	836	0
chr2	231540048	231548472	B_Cells_Pritchard.3128631	0	+	231540048	231548472	0	3	1446,975,2459	0,1602,5965
chr2	231542727	231550934	B_Cells_Pritchard.3128635	0	+	231542727	231550934	0	4	448,296,505,1682	0,1532,6002,6525
chr2	231545841	231548482	B_cells_Cheung.191749	0	.	231545841	231548482	0	1	2641	0
chr2	231548765	231551001	B_cells_Cheung.191750	0	.	231548765	231551001	0	1	2236	0
chr2	231553217	231555940	B_cells_Cheung.191753	0	.	231553217	231555940	0	1	2723	0
chr2	231554192	231561375	B_Cells_Pritchard.3128657	0	+	231554192	231561375	0	2	1719,3953	0,3230
chr2	231554593	231555862	MIP101.67726	0	.	231554593	231555862	0	1	1269	0
chr2	231554625	231555912	H1_polyA+.113129	0	.	231554625	231555912	0	1	1287	0
chr2	231556125	231559392	H1_polyA+.113130	0	.	231556125	231559392	0	1	3267	0
chr2	231556135	231561761	B_cells_Cheung.191754	0	.	231556135	231561761	0	1	5626	0
chr2	231556135	231561761	B_cells_Cheung.191755	0	+	231556135	231561761	0	2	2942,2118	0,3508
chr2	231556150	231560311	MIP101.67728	0	.	231556150	231560311	0	1	4161	0
chr2	231556150	231560311	MIP101.67727	0	-	231556150	231560311	0	2	2919,369	0,3792
chr2	231556302	231561375	B_Cells_Pritchard.3128659	0	-	231556302	231561375	0	1	5073	0
chr2	231559831	231560565	A549_Myers.84898	0	.	231559831	231560565	0	1	734	0
chr2	231559928	231560310	H1_polyA+.113131	0	.	231559928	231560310	0	1	382	0
chr2	231560534	231562796	Rinn_00005354	0	-	231560534	231562796	0	2	604,178	0,2084
chr2	231562930	231563583	B_cells_Cheung.191757	0	.	231562930	231563583	0	1	653	0
chr2	231624012	231624507	prostate_normal.58070	0	.	231624012	231624507	0	1	495	0
chr2	231625188	231625735	H1_polyA+.113134	0	.	231625188	231625735	0	1	547	0
chr2	231625188	231625516	ZR751_Thompson.23713	0	.	231625188	231625516	0	1	328	0
chr2	231625215	231625593	kidney_Gilad.82942	0	.	231625215	231625593	0	1	378	0
chr2	231625495	231625800	A549_Myers.84915	0	.	231625495	231625800	0	1	305	0
chr2	231750412	231754927	pHIT000100721	0	-	231750412	231754927	0	3	87,128,205	0,3687,4310
chr2	231751908	231752341	B_cells_Cheung.191790	0	.	231751908	231752341	0	1	433	0
chr2	231752649	231754367	B_cells_Cheung.191791	0	.	231752649	231754367	0	1	1718	0
chr2	231754596	231756410	REMC_BreastStem.48451	0	.	231754596	231756410	0	1	1814	0
chr2	231756581	231757685	REMC_BreastStem.48452	0	.	231756581	231757685	0	1	1104	0
chr2	231949914	231950426	B_cells_Cheung.191862	0	.	231949914	231950426	0	1	512	0
chr2	231950574	231953711	REMC_LuminalBreast.96422	0	.	231950574	231953711	0	1	3137	0
chr2	231951252	231952019	B_cells_Cheung.191864	0	.	231951252	231952019	0	1	767	0
chr2	231952188	231953361	B_cells_Cheung.191866	0	.	231952188	231953361	0	1	1173	0
chr2	231952596	231953359	H1_polyA+.113306	0	.	231952596	231953359	0	1	763	0
chr2	231954298	231955063	HeLa_polyA+_Chen.35014	0	.	231954298	231955063	0	1	765	0
chr2	231954429	231954801	B_cells_Cheung.191868	0	.	231954429	231954801	0	1	372	0
chr2	231955355	231957357	B_cells_Cheung.191869	0	.	231955355	231957357	0	1	2002	0
chr2	231959366	231964294	B_cells_Cheung.191872	0	.	231959366	231964294	0	1	4928	0
chr2	231961140	231961953	A549_Myers.84961	0	.	231961140	231961953	0	1	813	0
chr2	231961271	231962779	prostate_normal.58103	0	.	231961271	231962779	0	1	1508	0
chr2	231961884	231962846	H1_polyA+.113311	0	.	231961884	231962846	0	1	962	0
chr2	231962048	231964231	melanoma_Garraway_short_term_cultures.67779	0	.	231962048	231964231	0	1	2183	0
chr2	231962508	231962915	A549_Myers.84962	0	.	231962508	231962915	0	1	407	0
chr2	231964488	231964840	brain_AmbionMAQC.44124	0	.	231964488	231964840	0	1	352	0
chr2	231964938	231965972	REMC_LuminalBreast.96423	0	.	231964938	231965972	0	1	1034	0
chr2	231965903	231967046	A549_Myers.84963	0	.	231965903	231967046	0	1	1143	0
chr2	231966334	231966949	HepG2_Caltech_ENCODE.37611	0	.	231966334	231966949	0	1	615	0
chr2	231966448	231967138	brain_AmbionMAQC.44125	0	.	231966448	231967138	0	1	690	0
chr2	231984911	231985948	A549_Myers.84967	0	.	231984911	231985948	0	1	1037	0
chr2	231985128	231987509	H1_polyA+.113201	0	.	231985128	231987509	0	1	2381	0
chr2	231990068	231991061	REMC_LuminalBreast.96429	0	.	231990068	231991061	0	1	993	0
chr2	231994107	231994969	H1_polyA+.113205	0	.	231994107	231994969	0	1	862	0
chr2	231998108	232000894	REMC_LuminalBreast.96433	0	.	231998108	232000894	0	1	2786	0
chr2	231998797	232000603	REMC_MyoepithelialBreast.89540	0	.	231998797	232000603	0	1	1806	0
chr2	232003792	232006215	REMC_MyoepithelialBreast.90299	0	.	232003792	232006215	0	1	2423	0
chr2	232003856	232006223	REMC_LuminalBreast.96552	0	.	232003856	232006223	0	1	2367	0
chr2	232003949	232005033	REMC_BreastStem.48482	0	.	232003949	232005033	0	1	1084	0
chr2	232008001	232008936	REMC_LuminalBreast.96554	0	.	232008001	232008936	0	1	935	0
chr2	232008055	232008835	REMC_BreastStem.48483	0	.	232008055	232008835	0	1	780	0
chr2	232021944	232023048	B_cells_Cheung.191884	0	.	232021944	232023048	0	1	1104	0
chr2	232021995	232022807	melanoma_Garraway_short_term_cultures.67789	0	.	232021995	232022807	0	1	812	0
chr2	232070503	232071312	prostate_normal.58225	0	.	232070503	232071312	0	1	809	0
chr2	232070504	232071309	prostate_carcinoma.97385	0	.	232070504	232071309	0	1	805	0
chr2	232070523	232071211	HeLa_polyA+_Chen.35022	0	.	232070523	232071211	0	1	688	0
chr2	232070627	232071258	brain_AmbionMAQC.44138	0	.	232070627	232071258	0	1	631	0
chr2	232072888	232073197	B_cells_Cheung.191969	0	.	232072888	232073197	0	1	309	0
chr2	232075186	232076174	NEC_from_H9.73690	0	.	232075186	232076174	0	1	988	0
chr2	232075293	232076186	ZR751_Thompson.23730	0	.	232075293	232076186	0	1	893	0
chr2	232075311	232076145	HeLa_polyA+_Chen.35024	0	.	232075311	232076145	0	1	834	0
chr2	232077448	232079848	H1_polyA+.117323	0	.	232077448	232079848	0	1	2400	0
chr2	232078830	232080890	prostate_carcinoma.97398	0	-	232078830	232080890	0	2	992,123	0,1937
chr2	232079133	232079831	MIP101.68024	0	.	232079133	232079831	0	1	698	0
chr2	232079186	232079831	melanoma_Garraway_short_term_cultures.67802	0	.	232079186	232079831	0	1	645	0
chr2	232079242	232079793	prostate_normal.58222	0	.	232079242	232079793	0	1	551	0
chr2	232079454	232080602	pHIT000100728	0	-	232079454	232080602	0	3	142,87,100	0,669,1048
chr2	232087032	232087916	A549_Myers.84981	0	.	232087032	232087916	0	1	884	0
chr2	232106692	232107044	A549_Myers.84984	0	.	232106692	232107044	0	1	352	0
chr2	232124427	232128685	B_Cells_Pritchard.3130211	0	-	232124427	232128685	0	2	167,1270	0,2988
chr2	232127479	232128770	B_cells_Cheung.191986	0	.	232127479	232128770	0	1	1291	0
chr2	232129862	232131534	B_cells_Cheung.191988	0	.	232129862	232131534	0	1	1672	0
chr2	232135758	232137078	B_cells_Cheung.191995	0	.	232135758	232137078	0	1	1320	0
chr2	232138974	232139443	B_cells_Cheung.191996	0	.	232138974	232139443	0	1	469	0
chr2	232141290	232141840	B_Cells_Pritchard.3130275	0	-	232141290	232141840	0	1	550	0
chr2	232151353	232151929	H1_polyA+.113238	0	.	232151353	232151929	0	1	576	0
chr2	232152562	232153157	H1_polyA+.113239	0	.	232152562	232153157	0	1	595	0
chr2	232169685	232170197	B_cells_Cheung.192002	0	.	232169685	232170197	0	1	512	0
chr2	232169855	232170860	REMC_MyoepithelialBreast.89598	0	.	232169855	232170860	0	1	1005	0
chr2	232170256	232171305	B_cells_Cheung.192005	0	.	232170256	232171305	0	1	1049	0
chr2	232170393	232174911	REMC_LuminalBreast.96461	0	.	232170393	232174911	0	1	4518	0
chr2	232170400	232171456	REMC_BreastStem.48511	0	.	232170400	232171456	0	1	1056	0
chr2	232170845	232171427	B_Cells_Pritchard.3130399	0	.	232170845	232171427	0	1	582	0
chr2	232171622	232173171	REMC_MyoepithelialBreast.89600	0	.	232171622	232173171	0	1	1549	0
chr2	232171695	232172845	REMC_BreastStem.48510	0	.	232171695	232172845	0	1	1150	0
chr2	232171706	232172846	B_Cells_Pritchard.3130401	0	.	232171706	232172846	0	1	1140	0
chr2	232173227	232174140	REMC_MyoepithelialBreast.89601	0	.	232173227	232174140	0	1	913	0
chr2	232173237	232175454	REMC_BreastStem.48512	0	.	232173237	232175454	0	1	2217	0
chr2	232174203	232175497	REMC_MyoepithelialBreast.89602	0	.	232174203	232175497	0	1	1294	0
chr2	232175163	232177641	REMC_LuminalBreast.96462	0	.	232175163	232177641	0	1	2478	0
chr2	232175599	232177630	REMC_MyoepithelialBreast.89603	0	.	232175599	232177630	0	1	2031	0
chr2	232175785	232192732	B_Cells_Pritchard.3130413	0	-	232175785	232192732	0	2	3558,8	0,16939
chr2	232175785	232179390	B_Cells_Pritchard.3130411	0	+	232175785	232179390	0	1	3605	0
chr2	232176455	232177635	B_cells_Cheung.192012	0	.	232176455	232177635	0	1	1180	0
chr2	232176494	232177601	prostate_normal.58123	0	.	232176494	232177601	0	1	1107	0
chr2	232176759	232177614	HeLa_polyA-_Chen.18338	0	.	232176759	232177614	0	1	855	0
chr2	232176792	232177511	H1_polyA+.113241	0	.	232176792	232177511	0	1	719	0
chr2	232176999	232177905	A549_Myers.84989	0	.	232176999	232177905	0	1	906	0
chr2	232177708	232179507	B_cells_Cheung.192011	0	.	232177708	232179507	0	1	1799	0
chr2	232177874	232179383	CD4_Snyder.73079	0	.	232177874	232179383	0	1	1509	0
chr2	232177881	232178328	HeLa_polyA-_Chen.18339	0	.	232177881	232178328	0	1	447	0
chr2	232177995	232179422	H1_polyA+.113242	0	.	232177995	232179422	0	1	1427	0
chr2	232178001	232180951	REMC_LuminalBreast.96463	0	.	232178001	232180951	0	1	2950	0
chr2	232178011	232180860	REMC_MyoepithelialBreast.89604	0	.	232178011	232180860	0	1	2849	0
chr2	232178030	232179519	REMC_BreastStem.48514	0	.	232178030	232179519	0	1	1489	0
chr2	232178113	232179335	prostate_carcinoma.97206	0	.	232178113	232179335	0	1	1222	0
chr2	232179474	232180877	H1_polyA+.113243	0	.	232179474	232180877	0	1	1403	0
chr2	232179824	232180904	B_cells_Cheung.192013	0	.	232179824	232180904	0	1	1080	0
chr2	232179925	232180881	prostate_carcinoma.97207	0	.	232179925	232180881	0	1	956	0
chr2	232180257	232180891	B_Cells_Pritchard.3130419	0	+	232180257	232180891	0	1	634	0
chr2	232181020	232181848	REMC_MyoepithelialBreast.89605	0	.	232181020	232181848	0	1	828	0
chr2	232181156	232182390	REMC_LuminalBreast.96464	0	.	232181156	232182390	0	1	1234	0
chr2	232181198	232181860	prostate_carcinoma.97208	0	.	232181198	232181860	0	1	662	0
chr2	232181213	232191538	H1_polyA+.113244	0	+	232181213	232191538	0	2	556,656	0,9669
chr2	232181214	232183927	B_Cells_Pritchard.3130423	0	+	232181214	232183927	0	2	727,74	0,2639
chr2	232182532	232186987	REMC_LuminalBreast.96465	0	.	232182532	232186987	0	1	4455	0
chr2	232182572	232183800	REMC_MyoepithelialBreast.89606	0	.	232182572	232183800	0	1	1228	0
chr2	232184077	232184530	prostate_carcinoma.97209	0	.	232184077	232184530	0	1	453	0
chr2	232184087	232186839	REMC_MyoepithelialBreast.89607	0	.	232184087	232186839	0	1	2752	0
chr2	232184129	232184922	REMC_BreastStem.48515	0	.	232184129	232184922	0	1	793	0
chr2	232184340	232185408	B_cells_Cheung.192017	0	.	232184340	232185408	0	1	1068	0
chr2	232184385	232184861	B_Cells_Pritchard.3130443	0	-	232184385	232184861	0	1	476	0
chr2	232184716	232187177	prostate_carcinoma.97210	0	.	232184716	232187177	0	1	2461	0
chr2	232184983	232188791	B_Cells_Pritchard.3130447	0	-	232184983	232188791	0	4	359,1128,1572,611	0,437,1625,3197
chr2	232185131	232185887	A549_Myers.84994	0	.	232185131	232185887	0	1	756	0
chr2	232186870	232187726	A549_Myers.84995	0	.	232186870	232187726	0	1	856	0
chr2	232187227	232189010	B_cells_Cheung.192019	0	.	232187227	232189010	0	1	1783	0
chr2	232187470	232189792	REMC_MyoepithelialBreast.89608	0	.	232187470	232189792	0	1	2322	0
chr2	232187568	232188516	prostate_carcinoma.97211	0	.	232187568	232188516	0	1	948	0
chr2	232187636	232188883	REMC_LuminalBreast.96466	0	.	232187636	232188883	0	1	1247	0
chr2	232192467	232195095	REMC_LuminalBreast.96468	0	.	232192467	232195095	0	1	2628	0
chr2	232192775	232194360	H1_polyA+.113245	0	.	232192775	232194360	0	1	1585	0
chr2	232200475	232201554	REMC_LuminalBreast.96471	0	.	232200475	232201554	0	1	1079	0
chr2	232206169	232206707	A549_Myers.84996	0	.	232206169	232206707	0	1	538	0
chr2	232212778	232217528	REMC_LuminalBreast.96472	0	.	232212778	232217528	0	1	4750	0
chr2	232213285	232213817	B_Cells_Pritchard.3130539	0	.	232213285	232213817	0	1	532	0
chr2	232217109	232218014	B_Cells_Pritchard.3130555	0	.	232217109	232218014	0	1	905	0
chr2	232221507	232221915	A549_Myers.85000	0	.	232221507	232221915	0	1	408	0
chr2	232225535	232225841	A549_Myers.85001	0	.	232225535	232225841	0	1	306	0
chr2	232225579	232225950	B_Cells_Pritchard.3130579	0	.	232225579	232225950	0	1	371	0
chr2	232232672	232243573	B_Cells_Pritchard.3130599	0	-	232232672	232243573	0	4	63,1202,409,1806	0,3474,8676,9095
chr2	232234769	232235471	B_Cells_Pritchard.3130625	0	-	232234769	232235471	0	1	702	0
chr2	232234913	232235922	A549_Myers.85002	0	.	232234913	232235922	0	1	1009	0
chr2	232234943	232235280	CD4_Snyder.73080	0	.	232234943	232235280	0	1	337	0
chr2	232235118	232237397	B_cells_Cheung.192026	0	.	232235118	232237397	0	1	2279	0
chr2	232235508	232236949	H1_polyA+.113246	0	.	232235508	232236949	0	1	1441	0
chr2	232235536	232236115	B_Cells_Pritchard.3130627	0	-	232235536	232236115	0	1	579	0
chr2	232237610	232240694	B_Cells_Pritchard.3130631	0	+	232237610	232240694	0	1	3084	0
chr2	232237610	232240694	B_Cells_Pritchard.3130629	0	-	232237610	232240694	0	2	1432,1652	0,1432
chr2	232239179	232240144	A549_Myers.85004	0	.	232239179	232240144	0	1	965	0
chr2	232239204	232240710	B_cells_Cheung.192029	0	.	232239204	232240710	0	1	1506	0
chr2	232241352	232243593	B_cells_Cheung.192030	0	.	232241352	232243593	0	1	2241	0
chr2	232245664	232246686	B_Cells_Pritchard.3130645	0	-	232245664	232246686	0	1	1022	0
chr2	232247020	232248024	B_Cells_Pritchard.3130649	0	-	232247020	232248024	0	1	1004	0
chr2	232252878	232254181	B_Cells_Pritchard.3130683	0	-	232252878	232254181	0	2	565,738	0,565
chr2	232253717	232254775	A549_Myers.85013	0	.	232253717	232254775	0	1	1058	0
chr2	232253850	232254215	B_cells_Cheung.192034	0	.	232253850	232254215	0	1	365	0
chr2	232254331	232254678	H1_rRNA-depleted_UCSD_REMC.85455	0	.	232254331	232254678	0	1	347	0
chr2	232257225	232257664	A549_Myers.85014	0	.	232257225	232257664	0	1	439	0
chr2	232257901	232258259	A549_Myers.85015	0	.	232257901	232258259	0	1	358	0
chr2	232258384	232258898	B_Cells_Pritchard.3130719	0	-	232258384	232258898	0	1	514	0
chr2	232260067	232261160	A549_Myers.85016	0	.	232260067	232261160	0	1	1093	0
chr2	232260541	232261755	H1_polyA+.113251	0	.	232260541	232261755	0	1	1214	0
chr2	232261678	232262786	brain_AmbionMAQC.44145	0	.	232261678	232262786	0	1	1108	0
chr2	232262008	232262876	H1_polyA+.113252	0	.	232262008	232262876	0	1	868	0
chr2	232262379	232262786	B_cells_Cheung.192035	0	.	232262379	232262786	0	1	407	0
chr2	232265477	232266332	B_cells_Cheung.192039	0	.	232265477	232266332	0	1	855	0
chr2	232265502	232267666	B_Cells_Pritchard.3130745	0	+	232265502	232267666	0	1	2164	0
chr2	232265502	232267666	B_Cells_Pritchard.3130743	0	-	232265502	232267666	0	2	1640,320	0,1844
chr2	232265689	232266224	A549_Myers.85017	0	.	232265689	232266224	0	1	535	0
chr2	232265734	232267227	H1_polyA+.113253	0	.	232265734	232267227	0	1	1493	0
chr2	232265964	232266994	REMC_LuminalBreast.96477	0	.	232265964	232266994	0	1	1030	0
chr2	232266492	232267198	prostate_carcinoma.97277	0	.	232266492	232267198	0	1	706	0
chr2	232266607	232267683	B_cells_Cheung.192040	0	.	232266607	232267683	0	1	1076	0
chr2	232268295	232270708	B_cells_Cheung.192042	0	.	232268295	232270708	0	1	2413	0
chr2	232269502	232270211	H1_polyA+.113254	0	.	232269502	232270211	0	1	709	0
chr2	232269529	232270183	prostate_carcinoma.97278	0	.	232269529	232270183	0	1	654	0
chr2	232272505	232275644	B_cells_Cheung.192045	0	.	232272505	232275644	0	1	3139	0
chr2	232272518	232272949	REMC_LuminalBreast.96480	0	.	232272518	232272949	0	1	431	0
chr2	232274707	232275550	REMC_MyoepithelialBreast.89613	0	.	232274707	232275550	0	1	843	0
chr2	232278834	232279700	K562.44859	0	.	232278834	232279700	0	1	866	0
chr2	232279081	232279694	liver_polyA+.128103	0	.	232279081	232279694	0	1	613	0
chr2	232279175	232279767	lymph_node_Burge.49073	0	.	232279175	232279767	0	1	592	0
chr2	232287720	232292424	REMC_MyoepithelialBreast.89620	0	.	232287720	232292424	0	1	4704	0
chr2	232287732	232288293	H9_polyA-_Chen.14145	0	.	232287732	232288293	0	1	561	0
chr2	232288412	232289260	B_cells_Cheung.192052	0	.	232288412	232289260	0	1	848	0
chr2	232288669	232289063	H9_polyA-_Chen.14144	0	.	232288669	232289063	0	1	394	0
chr2	232289048	232289938	REMC_BreastStem.48522	0	.	232289048	232289938	0	1	890	0
chr2	232289318	232292182	B_cells_Cheung.192053	0	.	232289318	232292182	0	1	2864	0
chr2	232289877	232291708	REMC_LuminalBreast.96487	0	.	232289877	232291708	0	1	1831	0
chr2	232296576	232301179	REMC_LuminalBreast.96490	0	.	232296576	232301179	0	1	4603	0
chr2	232296786	232301047	REMC_MyoepithelialBreast.89622	0	.	232296786	232301047	0	1	4261	0
chr2	232297128	232298334	B_Cells_Pritchard.3130785	0	+	232297128	232298334	0	2	498,386	0,820
chr2	232297289	232300149	B_cells_Cheung.192058	0	.	232297289	232300149	0	1	2860	0
chr2	232297299	232298335	REMC_BreastStem.48524	0	.	232297299	232298335	0	1	1036	0
chr2	232298612	232299852	melanoma_Garraway_short_term_cultures.67815	0	.	232298612	232299852	0	1	1240	0
chr2	232300224	232301071	B_cells_Cheung.192059	0	.	232300224	232301071	0	1	847	0
chr2	232300230	232301080	B_Cells_Pritchard.3130789	0	-	232300230	232301080	0	1	850	0
chr2	232300327	232301052	melanoma_Garraway_short_term_cultures.67816	0	.	232300327	232301052	0	1	725	0
chr2	232300414	232301028	H1_polyA+.113352	0	.	232300414	232301028	0	1	614	0
chr2	232301329	232302942	B_cells_Cheung.192060	0	.	232301329	232302942	0	1	1613	0
chr2	232301364	232303053	REMC_MyoepithelialBreast.89623	0	.	232301364	232303053	0	1	1689	0
chr2	232301459	232303731	REMC_LuminalBreast.96491	0	.	232301459	232303731	0	1	2272	0
chr2	232303187	232303956	B_cells_Cheung.192061	0	.	232303187	232303956	0	1	769	0
chr2	232303221	232303598	H1_polyA+.113354	0	.	232303221	232303598	0	1	377	0
chr2	232303225	232303944	CD4_Plagnol_resting.62353	0	.	232303225	232303944	0	1	719	0
chr2	232303260	232303970	REMC_MyoepithelialBreast.89624	0	.	232303260	232303970	0	1	710	0
chr2	232303517	232304096	B_Cells_Pritchard.3130801	0	+	232303517	232304096	0	1	579	0
chr2	232382794	232384065	brain_AmbionMAQC.44148	0	.	232382794	232384065	0	1	1271	0
chr2	232382799	232385324	HIT000034017	0	+	232382799	232385324	0	1	2525	0
chr2	232382892	232383455	A549_Myers.85035	0	.	232382892	232383455	0	1	563	0
chr2	232382952	232383446	H9_polyA+.44739	0	.	232382952	232383446	0	1	494	0
chr2	232454313	232454823	BT474_Burge_Thompson.33986	0	.	232454313	232454823	0	1	510	0
chr2	232473434	232473861	A549_Myers.85036	0	.	232473434	232473861	0	1	427	0
chr2	232476347	232478099	REMC_BreastStem.48533	0	.	232476347	232478099	0	1	1752	0
chr2	232480924	232482282	REMC_MyoepithelialBreast.89652	0	.	232480924	232482282	0	1	1358	0
chr2	232481247	232482446	REMC_BreastStem.48536	0	.	232481247	232482446	0	1	1199	0
chr2	232482855	232487889	REMC_BreastStem.48537	0	-	232482855	232487889	0	3	933,260,543	0,1022,4491
chr2	232483027	232484135	REMC_MyoepithelialBreast.89653	0	.	232483027	232484135	0	1	1108	0
chr2	232486246	232487617	REMC_MyoepithelialBreast.89654	0	.	232486246	232487617	0	1	1371	0
chr2	232489378	232491789	REMC_BreastStem.48541	0	.	232489378	232491789	0	1	2411	0
chr2	232491927	232493010	REMC_BreastStem.48542	0	.	232491927	232493010	0	1	1083	0
chr2	232492685	232494533	REMC_MyoepithelialBreast.89655	0	.	232492685	232494533	0	1	1848	0
chr2	232507057	232507444	A549_Myers.85042	0	.	232507057	232507444	0	1	387	0
chr2	232532719	232533310	B_cells_Cheung.192081	0	.	232532719	232533310	0	1	591	0
chr2	233062252	233063015	H1_polyA+.113391	0	.	233062252	233063015	0	1	763	0
chr2	233072001	233072588	A549_Myers.85097	0	.	233072001	233072588	0	1	587	0
chr2	233157980	233158906	B_cells_Cheung.192260	0	.	233157980	233158906	0	1	926	0
chr2	233158001	233158861	MCF10A_Thompson.21177	0	.	233158001	233158861	0	1	860	0
chr2	233158071	233158892	brain_AmbionMAQC.44167	0	.	233158071	233158892	0	1	821	0
chr2	233158141	233158918	ZR751_Thompson.23750	0	.	233158141	233158918	0	1	777	0
chr2	233158155	233158967	CD4_Plagnol_activated.64194	0	.	233158155	233158967	0	1	812	0
chr2	233158155	233158917	prostate_carcinoma.97271	0	.	233158155	233158917	0	1	762	0
chr2	233158155	233158817	NEC_from_H9.73766	0	.	233158155	233158817	0	1	662	0
chr2	233158156	233158906	liver_polyA+.128185	0	.	233158156	233158906	0	1	750	0
chr2	233158160	233158878	MCF7_Burge_Thompson.31278	0	.	233158160	233158878	0	1	718	0
chr2	233158162	233159136	melanoma_Garraway_short_term_cultures.67847	0	.	233158162	233159136	0	1	974	0
chr2	233158172	233158906	prostate_normal.58179	0	.	233158172	233158906	0	1	734	0
chr2	233158172	233158866	BT20_Thompson.21842	0	.	233158172	233158866	0	1	694	0
chr2	233158183	233158809	MDAMB468_Thompson.24231	0	.	233158183	233158809	0	1	626	0
chr2	233158185	233159118	CD4_Plagnol_resting.62413	0	.	233158185	233159118	0	1	933	0
chr2	233158190	233158758	K562.44902	0	.	233158190	233158758	0	1	568	0
chr2	233158210	233158804	MDAMB231_Thompson.21863	0	.	233158210	233158804	0	1	594	0
chr2	233158526	233158894	HeLa_polyA+_Chen.35053	0	.	233158526	233158894	0	1	368	0
chr2	233159418	233161838	REMC_LuminalBreast.96547	0	.	233159418	233161838	0	1	2420	0
chr2	233159990	233160405	B_cells_Cheung.192261	0	.	233159990	233160405	0	1	415	0
chr2	233164338	233166324	REMC_LuminalBreast.96549	0	.	233164338	233166324	0	1	1986	0
chr2	233164401	233165186	H1_polyA+.113410	0	.	233164401	233165186	0	1	785	0
chr2	233172047	233173160	REMC_LuminalBreast.96550	0	.	233172047	233173160	0	1	1113	0
chr2	233177137	233177449	B_Cells_Pritchard.3133351	0	.	233177137	233177449	0	1	312	0
chr2	233612731	233613226	A549_Myers.85159	0	.	233612731	233613226	0	1	495	0
chr2	233621672	233622189	B_Cells_Pritchard.3134459	0	.	233621672	233622189	0	1	517	0
chr2	233631543	233631962	A549_Myers.85161	0	.	233631543	233631962	0	1	419	0
chr2	233925456	233925970	BT474_Burge_Thompson.34046	0	.	233925456	233925970	0	1	514	0
chr2	234047267	234047636	A549_Myers.85256	0	.	234047267	234047636	0	1	369	0
chr2	234147169	234151171	BT474_Burge_Thompson.34070	0	+	234147169	234151171	0	3	100,218,22	0,1210,3980
chr2	234147169	234151190	A549_Myers.85205	0	+	234147169	234151190	0	3	100,218,41	0,1210,3980
chr2	234147170	234151177	K562.44937	0	+	234147170	234151177	0	3	99,218,28	0,1209,3979
chr2	234147170	234151174	MCF7_Burge_Thompson.31299	0	+	234147170	234151174	0	3	99,218,25	0,1209,3979
chr2	234147178	234148595	prostate_normal.58229	0	+	234147178	234148595	0	2	91,216	0,1201
chr2	234147180	234151174	REMC_LuminalBreast.96711	0	+	234147180	234151174	0	3	89,218,25	0,1199,3969
chr2	234147180	234151200	melanoma_Garraway_short_term_cultures.67902	0	+	234147180	234151200	0	3	89,218,51	0,1199,3969
chr2	234147181	234151174	ZR751_Thompson.23767	0	+	234147181	234151174	0	3	88,218,25	0,1198,3968
chr2	234147182	234151199	REMC_MyoepithelialBreast.89776	0	+	234147182	234151199	0	3	87,218,50	0,1197,3967
chr2	234147182	234148595	liver_polyA+.128447	0	+	234147182	234148595	0	2	87,216	0,1197
chr2	234147182	234151199	MCF10A_Thompson.21202	0	+	234147182	234151199	0	3	87,218,50	0,1197,3967
chr2	234147182	234151173	HepG2_Caltech_ENCODE.37694	0	+	234147182	234151173	0	3	87,218,24	0,1197,3967
chr2	234147183	234151166	HeLa_polyA+_Chen.35069	0	+	234147183	234151166	0	3	86,218,17	0,1196,3966
chr2	234147183	234151199	B_cells_Cheung.192451	0	+	234147183	234151199	0	3	86,218,50	0,1196,3966
chr2	234147183	234151172	H9_polyA+.44823	0	+	234147183	234151172	0	3	86,218,23	0,1196,3966
chr2	234147190	234151174	T47D_Burge_Thompson.28771	0	+	234147190	234151174	0	3	79,218,25	0,1189,3959
chr2	234147204	234151172	REMC_BreastStem.48591	0	+	234147204	234151172	0	3	65,218,23	0,1175,3945
chr2	234655208	234655700	A549_Myers.85271	0	.	234655208	234655700	0	1	492	0
chr2	234655298	234656102	kidney_Gilad.83236	0	.	234655298	234656102	0	1	804	0
chr2	234655641	234657873	HIT000020991	0	-	234655641	234657873	0	1	2232	0
chr2	234670346	234671029	liver_polyA+.128530	0	.	234670346	234671029	0	1	683	0
chr2	234862379	234866845	CD4_Snyder.73241	0	.	234862379	234866845	0	1	4466	0
chr2	234867206	234867664	B_Cells_Pritchard.3137235	0	.	234867206	234867664	0	1	458	0
chr2	234880629	234881160	B_Cells_Pritchard.3137283	0	.	234880629	234881160	0	1	531	0
chr2	234905063	234905996	REMC_MyoepithelialBreast.89730	0	.	234905063	234905996	0	1	933	0
chr2	234906369	234907686	REMC_LuminalBreast.96652	0	.	234906369	234907686	0	1	1317	0
chr2	234906799	234907686	REMC_MyoepithelialBreast.89731	0	.	234906799	234907686	0	1	887	0
chr2	234909280	234909610	A549_Myers.85285	0	.	234909280	234909610	0	1	330	0
chr2	234998676	235000904	CD4_Snyder.73250	0	.	234998676	235000904	0	1	2228	0
chr2	235016240	235018768	CD4_Plagnol_activated.64320	0	.	235016240	235018768	0	1	2528	0
chr2	235016259	235018402	CD4_Plagnol_resting.62490	0	.	235016259	235018402	0	1	2143	0
chr2	235016387	235018810	CD4_Snyder.73262	0	.	235016387	235018810	0	1	2423	0
chr2	235023339	235024023	CD4_Plagnol_resting.62493	0	.	235023339	235024023	0	1	684	0
chr2	235023374	235027112	CD4_Plagnol_activated.64327	0	.	235023374	235027112	0	1	3738	0
chr2	235026051	235028092	HIT000018563	0	+	235026051	235028092	0	1	2041	0
chr2	235026284	235028077	CD4_Snyder.73260	0	.	235026284	235028077	0	1	1793	0
chr2	235035606	235036549	prostate_carcinoma.97404	0	.	235035606	235036549	0	1	943	0
chr2	235036177	235037435	REMC_MyoepithelialBreast.89736	0	.	235036177	235037435	0	1	1258	0
chr2	235049402	235052635	REMC_LuminalBreast.96656	0	.	235049402	235052635	0	1	3233	0
chr2	235051797	235053654	REMC_MyoepithelialBreast.89779	0	-	235051797	235053654	0	2	1587,36	0,1821
chr2	235051797	235053743	REMC_MyoepithelialBreast.89778	0	.	235051797	235053743	0	1	1946	0
chr2	235052400	235054192	CD4_Plagnol_resting.62500	0	.	235052400	235054192	0	1	1792	0
chr2	235052479	235053213	prostate_carcinoma.97409	0	.	235052479	235053213	0	1	734	0
chr2	235053823	235055770	REMC_MyoepithelialBreast.89780	0	.	235053823	235055770	0	1	1947	0
chr2	235057834	235059114	REMC_LuminalBreast.97105	0	.	235057834	235059114	0	1	1280	0
chr2	235058661	235059142	CD4_Snyder.73255	0	.	235058661	235059142	0	1	481	0
chr2	235063253	235064038	REMC_MyoepithelialBreast.89784	0	.	235063253	235064038	0	1	785	0
chr2	235063320	235064732	CD4_Plagnol_activated.64451	0	.	235063320	235064732	0	1	1412	0
chr2	235072414	235074021	H1_polyA+.113520	0	.	235072414	235074021	0	1	1607	0
chr2	235075464	235076246	REMC_LuminalBreast.97109	0	.	235075464	235076246	0	1	782	0
chr2	235082789	235084301	REMC_LuminalBreast.97110	0	.	235082789	235084301	0	1	1512	0
chr2	235087443	235088892	BT474_Burge_Thompson.34052	0	.	235087443	235088892	0	1	1449	0
chr2	235088198	235088728	prostate_carcinoma.97416	0	.	235088198	235088728	0	1	530	0
chr2	235091243	235092338	REMC_LuminalBreast.97112	0	.	235091243	235092338	0	1	1095	0
chr2	235139232	235139738	REMC_LuminalBreast.97120	0	.	235139232	235139738	0	1	506	0
chr2	235139868	235142181	REMC_LuminalBreast.97121	0	.	235139868	235142181	0	1	2313	0
chr2	235140042	235141210	prostate_carcinoma.97417	0	.	235140042	235141210	0	1	1168	0
chr2	235140589	235141709	BT474_Burge_Thompson.34053	0	.	235140589	235141709	0	1	1120	0
chr2	235145134	235145818	REMC_LuminalBreast.97123	0	.	235145134	235145818	0	1	684	0
chr2	235152970	235154988	REMC_LuminalBreast.97127	0	.	235152970	235154988	0	1	2018	0
chr2	235160045	235161523	REMC_LuminalBreast.97128	0	.	235160045	235161523	0	1	1478	0
chr2	235163150	235166729	REMC_LuminalBreast.97130	0	.	235163150	235166729	0	1	3579	0
chr2	235163321	235164135	prostate_carcinoma.97419	0	.	235163321	235164135	0	1	814	0
chr2	235168544	235206166	REMC_LuminalBreast.97100	0	-	235168544	235206166	0	3	2649,48,503	0,27998,37119
chr2	235168544	235172037	REMC_LuminalBreast.97101	0	.	235168544	235172037	0	1	3493	0
chr2	235170040	235171195	prostate_normal.58294	0	.	235170040	235171195	0	1	1155	0
chr2	235170348	235171491	prostate_carcinoma.97423	0	.	235170348	235171491	0	1	1143	0
chr2	235170650	235171118	liver_polyA+.128547	0	.	235170650	235171118	0	1	468	0
chr2	235170678	235171336	BT474_Burge_Thompson.34054	0	.	235170678	235171336	0	1	658	0
chr2	235173592	235176233	REMC_LuminalBreast.97133	0	.	235173592	235176233	0	1	2641	0
chr2	235173971	235175985	prostate_carcinoma.97424	0	.	235173971	235175985	0	1	2014	0
chr2	235175162	235176081	prostate_normal.58297	0	.	235175162	235176081	0	1	919	0
chr2	235176508	235177090	REMC_LuminalBreast.97134	0	.	235176508	235177090	0	1	582	0
chr2	235176536	235177442	prostate_carcinoma.97425	0	.	235176536	235177442	0	1	906	0
chr2	235176537	235177477	BT474_Burge_Thompson.34055	0	.	235176537	235177477	0	1	940	0
chr2	235176576	235176996	prostate_normal.58298	0	.	235176576	235176996	0	1	420	0
chr2	235177397	235180482	REMC_LuminalBreast.97135	0	.	235177397	235180482	0	1	3085	0
chr2	235177804	235179926	prostate_carcinoma.97426	0	.	235177804	235179926	0	1	2122	0
chr2	235189967	235191514	REMC_LuminalBreast.97141	0	.	235189967	235191514	0	1	1547	0
chr2	235205148	235206166	REMC_LuminalBreast.97102	0	.	235205148	235206166	0	1	1018	0
chr2	235261129	235261921	A549_Myers.85295	0	.	235261129	235261921	0	1	792	0
chr2	235334608	235334921	kidney_Gilad.83270	0	.	235334608	235334921	0	1	313	0
chr2	235334608	235334921	liver_polyA+.128573	0	.	235334608	235334921	0	1	313	0
chr2	235382887	235383358	prostate_carcinoma.97431	0	.	235382887	235383358	0	1	471	0
chr2	235386984	235392124	H1_polyA+.113530	0	.	235386984	235392124	0	1	5140	0
chr2	235387080	235390236	prostate_carcinoma.97434	0	.	235387080	235390236	0	1	3156	0
chr2	235388994	235389437	H9_polyA+.44831	0	.	235388994	235389437	0	1	443	0
chr2	235389302	235391125	MIP101.68036	0	.	235389302	235391125	0	1	1823	0
chr2	235389720	235390157	liver_polyA+.128580	0	.	235389720	235390157	0	1	437	0
chr2	235390300	235390691	prostate_carcinoma.97435	0	.	235390300	235390691	0	1	391	0
chr2	235395682	235396128	MIP101.68037	0	.	235395682	235396128	0	1	446	0
chr2	235395800	235396216	prostate_carcinoma.97436	0	.	235395800	235396216	0	1	416	0
chr2	235414553	235415695	H1_polyA+.113527	0	.	235414553	235415695	0	1	1142	0
chr2	235417978	235420388	H1_polyA+.113528	0	.	235417978	235420388	0	1	2410	0
chr2	235435296	235435897	H1_polyA+.113536	0	.	235435296	235435897	0	1	601	0
chr2	235436258	235437035	H1_polyA+.113541	0	.	235436258	235437035	0	1	777	0
chr2	235438035	235439549	MIP101.68042	0	.	235438035	235439549	0	1	1514	0
chr2	235458180	235461203	H1_polyA+.113548	0	.	235458180	235461203	0	1	3023	0
chr2	235505882	235506550	B_Cells_Pritchard.3138997	0	.	235505882	235506550	0	1	668	0
chr2	235631561	235633142	melanoma_Garraway_short_term_cultures.67943	0	.	235631561	235633142	0	1	1581	0
chr2	235709349	235709658	A549_Myers.85324	0	.	235709349	235709658	0	1	309	0
chr2	235751277	235752288	Rinn_00003129	0	+	235751277	235752288	0	2	171,494	0,517
chr2	235874533	235875303	B_Cells_Pritchard.3139905	0	.	235874533	235875303	0	1	770	0
chr2	235917431	235918238	A549_Myers.85332	0	.	235917431	235918238	0	1	807	0
chr2	235918670	235919156	A549_Myers.85333	0	.	235918670	235919156	0	1	486	0
chr2	235931271	235931918	A549_Myers.85334	0	.	235931271	235931918	0	1	647	0
chr2	235957781	235958519	B_Cells_Pritchard.3140101	0	.	235957781	235958519	0	1	738	0
chr2	235957824	235958199	B_cells_Cheung.192488	0	.	235957824	235958199	0	1	375	0
chr2	236064726	236066040	BT474_Burge_Thompson.34071	0	.	236064726	236066040	0	1	1314	0
chr2	236707156	236707832	H1_polyA+.113870	0	.	236707156	236707832	0	1	676	0
chr2	236715819	236716811	REMC_LuminalBreast.96764	0	.	236715819	236716811	0	1	992	0
chr2	236716967	236718803	REMC_LuminalBreast.96765	0	.	236716967	236718803	0	1	1836	0
chr2	236723441	236724455	REMC_LuminalBreast.96768	0	.	236723441	236724455	0	1	1014	0
chr2	236734781	236735211	A549_Myers.85396	0	.	236734781	236735211	0	1	430	0
chr2	236737623	236737992	A549_Myers.85397	0	.	236737623	236737992	0	1	369	0
chr2	236868890	236869774	H1_polyA+.113666	0	.	236868890	236869774	0	1	884	0
chr2	236891661	236891997	A549_Myers.85420	0	.	236891661	236891997	0	1	336	0
chr2	237115450	237116114	B_cells_Cheung.192631	0	.	237115450	237116114	0	1	664	0
chr2	237117651	237118229	B_cells_Cheung.192633	0	.	237117651	237118229	0	1	578	0
chr2	237122783	237123927	B_Cells_Pritchard.3143801	0	.	237122783	237123927	0	1	1144	0
chr2	237200092	237200559	A549_Myers.85447	0	.	237200092	237200559	0	1	467	0
chr2	237203945	237204468	B_Cells_Pritchard.3144021	0	.	237203945	237204468	0	1	523	0
chr2	237205848	237207136	BT474_Burge_Thompson.34083	0	.	237205848	237207136	0	1	1288	0
chr2	237214052	237214362	A549_Myers.85448	0	.	237214052	237214362	0	1	310	0
chr2	237320316	237382212	pHIT000005834	0	+	237320316	237382212	0	8	15,42,73,66,47,75,132,156	0,1434,2114,19219,27648,34615,48983,61740
chr2	237321750	237382212	pHIT000074321	0	+	237321750	237382212	0	7	42,73,66,47,75,132,156	0,680,17785,26214,33181,47549,60306
chr2	237385926	237389687	MCF7_Burge_Thompson.31357	0	-	237385926	237389687	0	2	1801,841	0,2920
chr2	237388501	237390131	pHIT000005835	0	+	237388501	237390131	0	3	65,167,179	0,1174,1451
chr2	237388855	237389401	A549_Myers.85456	0	.	237388855	237389401	0	1	546	0
chr2	237389795	237390619	MCF7_Burge_Thompson.31358	0	.	237389795	237390619	0	1	824	0
chr2	237428495	237430098	MCF7_Burge_Thompson.31360	0	.	237428495	237430098	0	1	1603	0
chr2	237449175	237450295	BT474_Burge_Thompson.34104	0	.	237449175	237450295	0	1	1120	0
chr2	237449246	237450483	MCF7_Burge_Thompson.31362	0	.	237449246	237450483	0	1	1237	0
chr2	237541807	237542844	B_Cells_Pritchard.3144841	0	.	237541807	237542844	0	1	1037	0
chr2	237571423	237573374	H1_polyA+.113677	0	.	237571423	237573374	0	1	1951	0
chr2	237585323	237586587	MIP101.68216	0	.	237585323	237586587	0	1	1264	0
chr2	237599746	237600976	MCF7_Burge_Thompson.31369	0	.	237599746	237600976	0	1	1230	0
chr2	237614655	237616082	MIP101.68219	0	.	237614655	237616082	0	1	1427	0
chr2	237631309	237634964	H1_polyA+.113682	0	.	237631309	237634964	0	1	3655	0
chr2	237633409	237636359	B_cells_Cheung.192656	0	.	237633409	237636359	0	1	2950	0
chr2	237633528	237638049	B_Cells_Pritchard.3145153	0	.	237633528	237638049	0	1	4521	0
chr2	237633554	237638165	HepG2_Caltech_ENCODE.37768	0	-	237633554	237638165	0	2	1165,2118	0,2493
chr2	237633554	237638165	HepG2_Caltech_ENCODE.37767	0	.	237633554	237638165	0	1	4611	0
chr2	237634628	237635946	prostate_carcinoma.97715	0	.	237634628	237635946	0	1	1318	0
chr2	237635128	237636799	H1_polyA+.113683	0	.	237635128	237636799	0	1	1671	0
chr2	237636911	237639059	H1_polyA+.113684	0	.	237636911	237639059	0	1	2148	0
chr2	237637822	237639064	MIP101.68226	0	.	237637822	237639064	0	1	1242	0
chr2	237638301	237639125	HepG2_Caltech_ENCODE.37769	0	.	237638301	237639125	0	1	824	0
chr2	237638450	237639066	B_Cells_Pritchard.3145157	0	.	237638450	237639066	0	1	616	0
chr2	237638556	237639059	prostate_carcinoma.97718	0	.	237638556	237639059	0	1	503	0
chr2	237638718	237639088	B_cells_Cheung.192660	0	.	237638718	237639088	0	1	370	0
chr2	237645604	237647027	MIP101.68231	0	.	237645604	237647027	0	1	1423	0
chr2	237645843	237647662	H1_polyA+.113687	0	.	237645843	237647662	0	1	1819	0
chr2	237646540	237648679	HepG2_Caltech_ENCODE.37772	0	.	237646540	237648679	0	1	2139	0
chr2	237646568	237647666	B_Cells_Pritchard.3145185	0	.	237646568	237647666	0	1	1098	0
chr2	237654680	237656964	B_cells_Cheung.192674	0	.	237654680	237656964	0	1	2284	0
chr2	237655906	237656686	B_Cells_Pritchard.3145217	0	-	237655906	237656686	0	1	780	0
chr2	237690909	237692155	MIP101.68239	0	.	237690909	237692155	0	1	1246	0
chr2	237696286	237698819	MIP101.68242	0	.	237696286	237698819	0	1	2533	0
chr2	237697541	237698443	B_cells_Cheung.192696	0	.	237697541	237698443	0	1	902	0
chr2	237697573	237698395	B_Cells_Pritchard.3145289	0	.	237697573	237698395	0	1	822	0
chr2	237701294	237702200	B_Cells_Pritchard.3145305	0	.	237701294	237702200	0	1	906	0
chr2	237701832	237726200	REMC_MyoepithelialBreast.90095	0	+	237701832	237726200	0	2	20065,837	0,23531
chr2	237701850	237703547	B_cells_Cheung.192697	0	.	237701850	237703547	0	1	1697	0
chr2	237702036	237704925	prostate_carcinoma.97719	0	.	237702036	237704925	0	1	2889	0
chr2	237702107	237704625	Rinn_00004618	0	-	237702107	237704625	0	2	285,176	0,2342
chr2	237702221	237702667	A549_Myers.85472	0	.	237702221	237702667	0	1	446	0
chr2	237702246	237702562	REMC_BreastStem.48717	0	.	237702246	237702562	0	1	316	0
chr2	237702290	237703285	prostate_normal.58381	0	.	237702290	237703285	0	1	995	0
chr2	237702576	237727438	REMC_LuminalBreast.96778	0	.	237702576	237727438	0	1	24862	0
chr2	237702625	237703269	H1_polyA+.113702	0	.	237702625	237703269	0	1	644	0
chr2	237703160	237703768	B_Cells_Pritchard.3145311	0	.	237703160	237703768	0	1	608	0
chr2	237703169	237703622	A549_Myers.85473	0	.	237703169	237703622	0	1	453	0
chr2	237703238	237705342	MIP101.68243	0	.	237703238	237705342	0	1	2104	0
chr2	237703382	237703910	prostate_normal.58382	0	.	237703382	237703910	0	1	528	0
chr2	237703611	237704536	B_cells_Cheung.192698	0	.	237703611	237704536	0	1	925	0
chr2	237703677	237704405	A549_Myers.85474	0	.	237703677	237704405	0	1	728	0
chr2	237703716	237705326	H1_polyA+.113703	0	.	237703716	237705326	0	1	1610	0
chr2	237703987	237704403	B_Cells_Pritchard.3145313	0	.	237703987	237704403	0	1	416	0
chr2	237704206	237712218	REMC_BreastStem.48718	0	.	237704206	237712218	0	1	8012	0
chr2	237704505	237705190	prostate_normal.58383	0	.	237704505	237705190	0	1	685	0
chr2	237712251	237713163	H1_polyA+.113704	0	.	237712251	237713163	0	1	912	0
chr2	237712506	237713126	A549_Myers.85475	0	.	237712506	237713126	0	1	620	0
chr2	237712558	237713219	B_Cells_Pritchard.3145345	0	.	237712558	237713219	0	1	661	0
chr2	237712573	237712940	B_cells_Cheung.192701	0	.	237712573	237712940	0	1	367	0
chr2	237712935	237721001	REMC_BreastStem.48721	0	.	237712935	237721001	0	1	8066	0
chr2	237721368	237722242	REMC_BreastStem.48722	0	.	237721368	237722242	0	1	874	0
chr2	237722200	237725188	REMC_MyoepithelialBreast.90096	0	.	237722200	237725188	0	1	2988	0
chr2	237723978	237744914	pHIT000073505	0	+	237723978	237744914	0	4	40,178,67,147	0,5868,6146,20789
chr2	237726349	237733236	REMC_MyoepithelialBreast.90027	0	.	237726349	237733236	0	1	6887	0
chr2	237726349	237735166	REMC_MyoepithelialBreast.90026	0	+	237726349	237735166	0	2	6589,542	0,8275
chr2	237727540	237732747	REMC_LuminalBreast.96779	0	.	237727540	237732747	0	1	5207	0
chr2	237728267	237728696	REMC_BreastStem.48725	0	.	237728267	237728696	0	1	429	0
chr2	237729451	237731139	MIP101.68250	0	.	237729451	237731139	0	1	1688	0
chr2	237729729	237732650	H1_polyA+.113707	0	.	237729729	237732650	0	1	2921	0
chr2	237729779	237744914	pHIT000005838	0	+	237729779	237744914	0	3	245,67,147	0,345,14988
chr2	237730039	237731879	B_Cells_Pritchard.3145415	0	.	237730039	237731879	0	1	1840	0
chr2	237733392	237736006	REMC_LuminalBreast.96780	0	.	237733392	237736006	0	1	2614	0
chr2	237733607	237735166	REMC_MyoepithelialBreast.90028	0	.	237733607	237735166	0	1	1559	0
chr2	237736117	237760602	REMC_BreastStem.48726	0	.	237736117	237760602	0	1	24485	0
chr2	237736771	237743384	REMC_LuminalBreast.96781	0	.	237736771	237743384	0	1	6613	0
chr2	237736946	237748220	REMC_MyoepithelialBreast.90031	0	.	237736946	237748220	0	1	11274	0
chr2	237748402	237761108	REMC_MyoepithelialBreast.90032	0	.	237748402	237761108	0	1	12706	0
chr2	237753063	237761081	REMC_LuminalBreast.96785	0	.	237753063	237761081	0	1	8018	0
chr2	237767049	237767970	REMC_MyoepithelialBreast.90037	0	.	237767049	237767970	0	1	921	0
chr2	237767396	237767856	A549_Myers.85476	0	.	237767396	237767856	0	1	460	0
chr2	237772435	237773351	REMC_MyoepithelialBreast.90040	0	.	237772435	237773351	0	1	916	0
chr2	237773680	237774924	REMC_BreastStem.48639	0	.	237773680	237774924	0	1	1244	0
chr2	237776177	237777222	REMC_LuminalBreast.96786	0	.	237776177	237777222	0	1	1045	0
chr2	237783098	237787034	REMC_BreastStem.48643	0	.	237783098	237787034	0	1	3936	0
chr2	237783974	237788190	H1_polyA+.113710	0	.	237783974	237788190	0	1	4216	0
chr2	237784480	237785537	REMC_MyoepithelialBreast.90046	0	.	237784480	237785537	0	1	1057	0
chr2	237785597	237789969	REMC_MyoepithelialBreast.90047	0	.	237785597	237789969	0	1	4372	0
chr2	237785867	237787311	HepG2_Caltech_ENCODE.37775	0	.	237785867	237787311	0	1	1444	0
chr2	237787137	237790034	REMC_BreastStem.48644	0	.	237787137	237790034	0	1	2897	0
chr2	237787360	237788471	REMC_LuminalBreast.96787	0	.	237787360	237788471	0	1	1111	0
chr2	237787377	237788135	B_Cells_Pritchard.3145617	0	.	237787377	237788135	0	1	758	0
chr2	237794193	237795422	REMC_BreastStem.48647	0	.	237794193	237795422	0	1	1229	0
chr2	237800327	237801443	H1_polyA+.113711	0	.	237800327	237801443	0	1	1116	0
chr2	237801039	237801835	REMC_MyoepithelialBreast.90052	0	.	237801039	237801835	0	1	796	0
chr2	237803585	237805598	REMC_MyoepithelialBreast.90054	0	.	237803585	237805598	0	1	2013	0
chr2	237808355	237809270	H1_polyA+.113713	0	.	237808355	237809270	0	1	915	0
chr2	237842438	237845641	REMC_BreastStem.48651	0	.	237842438	237845641	0	1	3203	0
chr2	237847995	237849412	REMC_BreastStem.48653	0	.	237847995	237849412	0	1	1417	0
chr2	237849820	237851051	REMC_BreastStem.48654	0	.	237849820	237851051	0	1	1231	0
chr2	237852187	237854950	REMC_BreastStem.48655	0	.	237852187	237854950	0	1	2763	0
chr2	237857758	237859887	REMC_BreastStem.48658	0	.	237857758	237859887	0	1	2129	0
chr2	237863619	237868760	REMC_BreastStem.48660	0	-	237863619	237868760	0	3	1509,113,407	0,4398,4734
chr2	237863765	237865114	MIP101.68251	0	.	237863765	237865114	0	1	1349	0
chr2	237864387	237868082	Rinn_00004621	0	-	237864387	237868082	0	2	741,66	0,3629
chr2	237870557	237871692	REMC_BreastStem.48662	0	.	237870557	237871692	0	1	1135	0
chr2	237876810	237877858	REMC_BreastStem.48663	0	.	237876810	237877858	0	1	1048	0
chr2	237880871	237881281	A549_Myers.85483	0	.	237880871	237881281	0	1	410	0
chr2	237880881	237881981	REMC_BreastStem.48664	0	.	237880881	237881981	0	1	1100	0
chr2	237887100	237888453	REMC_BreastStem.48668	0	.	237887100	237888453	0	1	1353	0
chr2	238001007	238001919	MCF7_Burge_Thompson.31388	0	.	238001007	238001919	0	1	912	0
chr2	238001486	238002262	CD4_Plagnol_activated.64389	0	.	238001486	238002262	0	1	776	0
chr2	238017868	238018299	A549_Myers.85497	0	.	238017868	238018299	0	1	431	0
chr2	238038164	238038488	B_Cells_Pritchard.3146279	0	.	238038164	238038488	0	1	324	0
chr2	238043137	238043645	K562.44961	0	.	238043137	238043645	0	1	508	0
chr2	238047157	238048158	BT474_Burge_Thompson.34176	0	.	238047157	238048158	0	1	1001	0
chr2	238047967	238048852	B_Cells_Pritchard.3146295	0	.	238047967	238048852	0	1	885	0
chr2	238048332	238048888	A549_Myers.85503	0	.	238048332	238048888	0	1	556	0
chr2	238057293	238058333	BT474_Burge_Thompson.34177	0	.	238057293	238058333	0	1	1040	0
chr2	238057297	238058185	ZR751_Thompson.24087	0	.	238057297	238058185	0	1	888	0
chr2	238057432	238058204	MCF7_Burge_Thompson.31699	0	.	238057432	238058204	0	1	772	0
chr2	238132017	238134058	ZR751_Thompson.23801	0	.	238132017	238134058	0	1	2041	0
chr2	238132030	238134017	melanoma_Garraway_short_term_cultures.68130	0	.	238132030	238134017	0	1	1987	0
chr2	238132212	238133629	T47D_Burge_Thompson.28811	0	.	238132212	238133629	0	1	1417	0
chr2	238132623	238133244	A549_Myers.85540	0	.	238132623	238133244	0	1	621	0
chr2	238134300	238136098	MCF7_Burge_Thompson.31426	0	.	238134300	238136098	0	1	1798	0
chr2	238134307	238136147	melanoma_Garraway_short_term_cultures.68131	0	.	238134307	238136147	0	1	1840	0
chr2	238134362	238135203	ZR751_Thompson.23800	0	.	238134362	238135203	0	1	841	0
chr2	238134406	238135715	prostate_normal.58660	0	.	238134406	238135715	0	1	1309	0
chr2	238134637	238135085	A549_Myers.85542	0	.	238134637	238135085	0	1	448	0
chr2	238138034	238138435	A549_Myers.85543	0	.	238138034	238138435	0	1	401	0
chr2	238142728	238144836	H1_polyA+.113724	0	.	238142728	238144836	0	1	2108	0
chr2	238142823	238143764	HepG2_Caltech_ENCODE.39051	0	.	238142823	238143764	0	1	941	0
chr2	238144210	238145589	REMC_LuminalBreast.96805	0	.	238144210	238145589	0	1	1379	0
chr2	238145196	238146162	MIP101.68257	0	.	238145196	238146162	0	1	966	0
chr2	238175823	238177546	prostate_carcinoma.100495	0	.	238175823	238177546	0	1	1723	0
chr2	238175937	238176896	HepG2_Caltech_ENCODE.37818	0	.	238175937	238176896	0	1	959	0
chr2	238176383	238177116	CD4_Snyder.73291	0	.	238176383	238177116	0	1	733	0
chr2	238186006	238187658	H1_polyA+.114099	0	.	238186006	238187658	0	1	1652	0
chr2	238186357	238199907	Rinn_00003132	0	+	238186357	238199907	0	2	278,1781	0,11769
chr2	238186358	238199907	ENST00000417947	0	+	238186358	238199907	0	2	277,1780	0,11769
chr2	238186358	238199907	HIT000014199	0	+	238186358	238199907	0	2	277,1780	0,11769
chr2	238191787	238192497	H1_polyA+.114101	0	.	238191787	238192497	0	1	710	0
chr2	238196979	238198489	T47D_Burge_Thompson.28812	0	.	238196979	238198489	0	1	1510	0
chr2	238197641	238198472	HepG2_Caltech_ENCODE.37820	0	.	238197641	238198472	0	1	831	0
chr2	238431208	238431619	A549_Myers.85593	0	.	238431208	238431619	0	1	411	0
chr2	238487320	238488237	prostate_normal.58444	0	.	238487320	238488237	0	1	917	0
chr2	238487770	238488311	brain_AmbionMAQC.44283	0	.	238487770	238488311	0	1	541	0
chr2	238488715	238490265	H1_polyA+.113875	0	.	238488715	238490265	0	1	1550	0
chr2	238490423	238491837	H1_polyA+.113876	0	.	238490423	238491837	0	1	1414	0
chr2	238492379	238493855	H1_polyA+.113878	0	.	238492379	238493855	0	1	1476	0
chr2	238492468	238493367	prostate_normal.58445	0	.	238492468	238493367	0	1	899	0
chr2	238494935	238495644	prostate_carcinoma.97879	0	.	238494935	238495644	0	1	709	0
chr2	238496937	238497292	A549_Myers.85606	0	.	238496937	238497292	0	1	355	0
chr2	238518648	238519263	REMC_BreastStem.48697	0	.	238518648	238519263	0	1	615	0
chr2	238731437	238731851	A549_Myers.85651	0	.	238731437	238731851	0	1	414	0
chr2	238794025	238796747	H1_polyA+.113936	0	.	238794025	238796747	0	1	2722	0
chr2	238794256	238794972	brain_AmbionMAQC.44305	0	.	238794256	238794972	0	1	716	0
chr2	238805065	238807724	NR_026923	0	+	238805065	238807724	0	1	2659	0
chr2	238805188	238805862	K562.45023	0	.	238805188	238805862	0	1	674	0
chr2	238805260	238807093	pHIT000005884	0	+	238805260	238807093	0	3	256,398,33	0,311,1800
chr2	238805260	238807093	pHIT000100804	0	+	238805260	238807093	0	3	256,155,33	0,554,1800
chr2	238805260	238805969	pHIT000100803	0	+	238805260	238805969	0	2	256,398	0,311
chr2	238805472	238806129	H1_polyA+.113942	0	.	238805472	238806129	0	1	657	0
chr2	238807835	238810586	ENST00000438457	0	+	238807835	238810586	0	2	172,1276	0,1475
chr2	238807835	238810614	HIT000093392	0	+	238807835	238810614	0	2	172,1304	0,1475
chr2	238864006	238866131	B_cells_Cheung.192864	0	.	238864006	238866131	0	1	2125	0
chr2	238864158	238865267	A549_Myers.85693	0	.	238864158	238865267	0	1	1109	0
chr2	238864784	238865233	K562.45040	0	.	238864784	238865233	0	1	449	0
chr2	238864896	238866057	H1_polyA+.113946	0	.	238864896	238866057	0	1	1161	0
chr2	238866956	238868477	REMC_LuminalBreast.96864	0	.	238866956	238868477	0	1	1521	0
chr2	238867126	238871484	prostate_normal.58492	0	-	238867126	238871484	0	2	2281,1199	0,3159
chr2	238867148	238869409	prostate_carcinoma.97897	0	.	238867148	238869409	0	1	2261	0
chr2	238867894	238868256	A549_Myers.85695	0	.	238867894	238868256	0	1	362	0
chr2	238870034	238871396	REMC_LuminalBreast.96865	0	.	238870034	238871396	0	1	1362	0
chr2	238870051	238871462	prostate_carcinoma.97896	0	.	238870051	238871462	0	1	1411	0
chr2	238872456	238872786	B_Cells_Pritchard.3148217	0	.	238872456	238872786	0	1	330	0
chr2	238872466	238872819	B_cells_Cheung.192866	0	.	238872466	238872819	0	1	353	0
chr2	238876184	238877757	REMC_LuminalBreast.96866	0	.	238876184	238877757	0	1	1573	0
chr2	238877598	238878033	A549_Myers.85700	0	.	238877598	238878033	0	1	435	0
chr2	238877859	238879098	REMC_LuminalBreast.96867	0	.	238877859	238879098	0	1	1239	0
chr2	238976196	238979034	REMC_LuminalBreast.96897	0	.	238976196	238979034	0	1	2838	0
chr2	238976422	238977515	H1_polyA+.113961	0	.	238976422	238977515	0	1	1093	0
chr2	238976436	238978359	REMC_MyoepithelialBreast.90171	0	.	238976436	238978359	0	1	1923	0
chr2	238977026	238978164	MIP101.68369	0	.	238977026	238978164	0	1	1138	0
chr2	238977056	238977535	HepG2_Caltech_ENCODE.37876	0	.	238977056	238977535	0	1	479	0
chr2	238977163	238977600	B_cells_Cheung.192871	0	.	238977163	238977600	0	1	437	0
chr2	238977659	238978135	B_cells_Cheung.192872	0	.	238977659	238978135	0	1	476	0
chr2	238978192	238978773	B_cells_Cheung.192873	0	.	238978192	238978773	0	1	581	0
chr2	238979502	238980577	REMC_LuminalBreast.96898	0	.	238979502	238980577	0	1	1075	0
chr2	238980944	238981529	B_Cells_Pritchard.3148735	0	.	238980944	238981529	0	1	585	0
chr2	238986417	238987552	REMC_MyoepithelialBreast.90175	0	.	238986417	238987552	0	1	1135	0
chr2	238986542	238987568	REMC_LuminalBreast.96902	0	.	238986542	238987568	0	1	1026	0
chr2	238991644	238994976	REMC_MyoepithelialBreast.90177	0	.	238991644	238994976	0	1	3332	0
chr2	238991707	238993924	REMC_LuminalBreast.96906	0	.	238991707	238993924	0	1	2217	0
chr2	238995789	238996589	MIP101.68370	0	.	238995789	238996589	0	1	800	0
chr2	238995886	238996360	A549_Myers.85720	0	.	238995886	238996360	0	1	474	0
chr2	239027003	239028822	REMC_MyoepithelialBreast.90185	0	.	239027003	239028822	0	1	1819	0
chr2	239027400	239028910	MIP101.68382	0	.	239027400	239028910	0	1	1510	0
chr2	239030052	239033363	MIP101.68384	0	.	239030052	239033363	0	1	3311	0
chr2	239037609	239038497	REMC_BreastStem.48805	0	.	239037609	239038497	0	1	888	0
chr2	239037854	239040822	REMC_MyoepithelialBreast.90190	0	.	239037854	239040822	0	1	2968	0
chr2	239037875	239038361	B_Cells_Pritchard.3148907	0	.	239037875	239038361	0	1	486	0
chr2	239037964	239040762	MIP101.68386	0	.	239037964	239040762	0	1	2798	0
chr2	239051047	239052006	REMC_MyoepithelialBreast.90195	0	.	239051047	239052006	0	1	959	0
chr2	239051087	239053103	REMC_BreastStem.48806	0	.	239051087	239053103	0	1	2016	0
chr2	239051372	239052052	MIP101.68391	0	.	239051372	239052052	0	1	680	0
chr2	239053260	239054622	REMC_BreastStem.48807	0	.	239053260	239054622	0	1	1362	0
chr2	239053532	239054629	MIP101.68393	0	.	239053532	239054629	0	1	1097	0
chr2	239053533	239054538	REMC_MyoepithelialBreast.90196	0	.	239053533	239054538	0	1	1005	0
chr2	239055929	239057868	REMC_BreastStem.48750	0	.	239055929	239057868	0	1	1939	0
chr2	239056240	239057210	H1_polyA+.113972	0	.	239056240	239057210	0	1	970	0
chr2	239056573	239057428	REMC_MyoepithelialBreast.90197	0	.	239056573	239057428	0	1	855	0
chr2	239056672	239057358	prostate_carcinoma.97930	0	.	239056672	239057358	0	1	686	0
chr2	239057975	239060438	REMC_BreastStem.48751	0	.	239057975	239060438	0	1	2463	0
chr2	239058135	239059994	H1_polyA+.113969	0	-	239058135	239059994	0	2	644,1088	0,771
chr2	239058170	239060202	prostate_carcinoma.97931	0	-	239058170	239060202	0	6	459,261,235,319,306,13	0,704,987,1229,1578,2019
chr2	239058194	239059144	MIP101.68396	0	.	239058194	239059144	0	1	950	0
chr2	239058312	239058769	REMC_MyoepithelialBreast.90198	0	.	239058312	239058769	0	1	457	0
chr2	239058323	239059716	prostate_normal.58507	0	.	239058323	239059716	0	1	1393	0
chr2	239058359	239060599	BT474_Burge_Thompson.34153	0	-	239058359	239060599	0	3	270,534,211	0,270,2029
chr2	239058548	239059087	B_Cells_Pritchard.3149005	0	.	239058548	239059087	0	1	539	0
chr2	239058671	239059197	H9_polyA+.44982	0	.	239058671	239059197	0	1	526	0
chr2	239058828	239060344	REMC_MyoepithelialBreast.90199	0	.	239058828	239060344	0	1	1516	0
chr2	239059157	239060265	BT474_Burge_Thompson.34154	0	.	239059157	239060265	0	1	1108	0
chr2	239059198	239059581	MIP101.68397	0	.	239059198	239059581	0	1	383	0
chr2	239059770	239060616	prostate_normal.58508	0	.	239059770	239060616	0	1	846	0
chr2	239060903	239061741	prostate_carcinoma.97932	0	.	239060903	239061741	0	1	838	0
chr2	239063007	239064049	MIP101.68398	0	.	239063007	239064049	0	1	1042	0
chr2	239067148	239068821	H1_polyA+.113973	0	.	239067148	239068821	0	1	1673	0
chr2	239068546	239147011	pHIT000100813	0	-	239068546	239147011	0	4	128,42,98,41	0,1576,74716,78424
chr2	239070343	239071168	B_Cells_Pritchard.3149053	0	.	239070343	239071168	0	1	825	0
chr2	239075298	239076348	H1_polyA+.113974	0	.	239075298	239076348	0	1	1050	0
chr2	239075526	239076164	prostate_carcinoma.97933	0	.	239075526	239076164	0	1	638	0
chr2	239081026	239082172	H1_polyA+.113975	0	.	239081026	239082172	0	1	1146	0
chr2	239084031	239085289	B_Cells_Pritchard.3149115	0	.	239084031	239085289	0	1	1258	0
chr2	239084068	239128434	Rinn_00002783	0	-	239084068	239128434	0	3	1258,138,582	0,40721,43784
chr2	239084069	239128434	ENST00000446979	0	-	239084069	239128434	0	3	1257,137,581	0,40721,43784
chr2	239084069	239128434	HIT000013990	0	-	239084069	239128434	0	3	1257,137,581	0,40721,43784
chr2	239084081	239085213	B_cells_Cheung.192888	0	.	239084081	239085213	0	1	1132	0
chr2	239085107	239086204	H1_polyA+.113976	0	.	239085107	239086204	0	1	1097	0
chr2	239091862	239092927	prostate_carcinoma.97935	0	.	239091862	239092927	0	1	1065	0
chr2	239093576	239095909	H1_polyA+.113978	0	.	239093576	239095909	0	1	2333	0
chr2	239093796	239094334	B_Cells_Pritchard.3150481	0	+	239093796	239094334	0	1	538	0
chr2	239093826	239094475	BT474_Burge_Thompson.34155	0	.	239093826	239094475	0	1	649	0
chr2	239094035	239094561	prostate_normal.58510	0	+	239094035	239094561	0	2	305,37	0,489
chr2	239094834	239095325	A549_Myers.85733	0	.	239094834	239095325	0	1	491	0
chr2	239094837	239096084	MIP101.68402	0	.	239094837	239096084	0	1	1247	0
chr2	239094862	239095884	B_Cells_Pritchard.3150485	0	+	239094862	239095884	0	1	1022	0
chr2	239094903	239095586	prostate_carcinoma.97938	0	.	239094903	239095586	0	1	683	0
chr2	239095136	239096160	B_cells_Cheung.192892	0	.	239095136	239096160	0	1	1024	0
chr2	239098201	239098705	B_Cells_Pritchard.3150493	0	+	239098201	239098705	0	1	504	0
chr2	239099520	239099885	B_Cells_Pritchard.3150499	0	+	239099520	239099885	0	1	365	0
chr2	239099522	239099923	B_cells_Cheung.192898	0	.	239099522	239099923	0	1	401	0
chr2	239100004	239100469	H1_polyA+.113980	0	.	239100004	239100469	0	1	465	0
chr2	239100022	239100866	prostate_carcinoma.97940	0	.	239100022	239100866	0	1	844	0
chr2	239100057	239115442	B_Cells_Pritchard.3150477	0	+	239100057	239115442	0	6	1804,6708,549,457,312,1356	0,4148,11185,12236,12765,14029
chr2	239100947	239101817	prostate_carcinoma.97937	0	.	239100947	239101817	0	1	870	0
chr2	239102542	239117434	B_cells_Cheung.192901	0	.	239102542	239117434	0	1	14892	0
chr2	239104550	239117180	B_Cells_Pritchard.3150475	0	-	239104550	239117180	0	7	4138,1186,262,454,745,458,584	0,4418,6671,6945,7487,8316,12046
chr2	239105794	239109030	H1_polyA+.113983	0	.	239105794	239109030	0	1	3236	0
chr2	239119922	239122104	B_cells_Cheung.192903	0	.	239119922	239122104	0	1	2182	0
chr2	239120011	239122084	REMC_MyoepithelialBreast.90203	0	.	239120011	239122084	0	1	2073	0
chr2	239120909	239121326	MIP101.68406	0	.	239120909	239121326	0	1	417	0
chr2	239123152	239123793	B_cells_Cheung.192906	0	.	239123152	239123793	0	1	641	0
chr2	239124606	239133203	B_Cells_Pritchard.3149201	0	+	239124606	239133203	0	2	801,5641	0,2956
chr2	239127337	239128252	MIP101.68408	0	.	239127337	239128252	0	1	915	0
chr2	239127512	239132920	B_cells_Cheung.192910	0	+	239127512	239132920	0	2	503,4706	0,702
chr2	239127512	239132920	B_cells_Cheung.192911	0	.	239127512	239132920	0	1	5408	0
chr2	239127600	239128054	A549_Myers.85735	0	.	239127600	239128054	0	1	454	0
chr2	239127922	239132829	Rinn_00005041	0	+	239127922	239132829	0	2	93,315	0,4592
chr2	239130530	239131252	MIP101.68410	0	.	239130530	239131252	0	1	722	0
chr2	239133370	239134965	MIP101.68412	0	.	239133370	239134965	0	1	1595	0
chr2	239135172	239135839	MIP101.68413	0	.	239135172	239135839	0	1	667	0
chr2	239138582	239139498	REMC_MyoepithelialBreast.90208	0	.	239138582	239139498	0	1	916	0
chr2	239143182	239162496	REMC_MyoepithelialBreast.90209	0	+	239143182	239162496	0	3	612,291,1553	0,913,17761
chr2	239145065	239146813	REMC_MyoepithelialBreast.90211	0	.	239145065	239146813	0	1	1748	0
chr2	239147470	239148878	REMC_MyoepithelialBreast.90212	0	.	239147470	239148878	0	1	1408	0
chr2	239148878	239151816	REMC_MyoepithelialBreast.90213	0	.	239148878	239151816	0	1	2938	0
chr2	239149456	239150265	REMC_LuminalBreast.96916	0	.	239149456	239150265	0	1	809	0
chr2	239152705	239154321	REMC_BreastStem.48765	0	.	239152705	239154321	0	1	1616	0
chr2	239153380	239158324	REMC_MyoepithelialBreast.90215	0	.	239153380	239158324	0	1	4944	0
chr2	239158487	239159597	REMC_MyoepithelialBreast.90216	0	.	239158487	239159597	0	1	1110	0
chr2	239159419	239161035	REMC_BreastStem.48766	0	.	239159419	239161035	0	1	1616	0
chr2	239159707	239160654	REMC_MyoepithelialBreast.90217	0	.	239159707	239160654	0	1	947	0
chr2	239159812	239160698	REMC_LuminalBreast.96922	0	.	239159812	239160698	0	1	886	0
chr2	239160821	239162496	REMC_MyoepithelialBreast.90210	0	.	239160821	239162496	0	1	1675	0
chr2	239161139	239163951	REMC_BreastStem.48767	0	.	239161139	239163951	0	1	2812	0
chr2	239161212	239163142	REMC_LuminalBreast.96923	0	.	239161212	239163142	0	1	1930	0
chr2	239166539	239170450	REMC_BreastStem.48769	0	.	239166539	239170450	0	1	3911	0
chr2	239166765	239170540	REMC_MyoepithelialBreast.90221	0	.	239166765	239170540	0	1	3775	0
chr2	239166948	239170372	REMC_LuminalBreast.96924	0	.	239166948	239170372	0	1	3424	0
chr2	239168024	239169916	prostate_carcinoma.97945	0	.	239168024	239169916	0	1	1892	0
chr2	239168035	239168758	prostate_normal.58511	0	.	239168035	239168758	0	1	723	0
chr2	239169399	239169761	A549_Myers.85742	0	.	239169399	239169761	0	1	362	0
chr2	239178418	239179910	REMC_BreastStem.48772	0	.	239178418	239179910	0	1	1492	0
chr2	239181936	239184765	REMC_MyoepithelialBreast.90229	0	.	239181936	239184765	0	1	2829	0
chr2	239183302	239183793	REMC_BreastStem.48775	0	.	239183302	239183793	0	1	491	0
chr2	239186992	239188570	REMC_BreastStem.48778	0	.	239186992	239188570	0	1	1578	0
chr2	239187152	239188903	REMC_MyoepithelialBreast.90231	0	.	239187152	239188903	0	1	1751	0
chr2	239190653	239192499	REMC_MyoepithelialBreast.90233	0	.	239190653	239192499	0	1	1846	0
chr2	239190818	239192250	REMC_BreastStem.48779	0	.	239190818	239192250	0	1	1432	0
chr2	239194034	239198797	REMC_MyoepithelialBreast.90235	0	.	239194034	239198797	0	1	4763	0
chr2	239195001	239197232	REMC_BreastStem.48780	0	.	239195001	239197232	0	1	2231	0
chr2	239195850	239197185	REMC_LuminalBreast.96926	0	.	239195850	239197185	0	1	1335	0
chr2	239199327	239200191	REMC_MyoepithelialBreast.90236	0	.	239199327	239200191	0	1	864	0
chr2	239206845	239207908	REMC_MyoepithelialBreast.90238	0	.	239206845	239207908	0	1	1063	0
chr2	239257933	239258766	REMC_MyoepithelialBreast.90247	0	.	239257933	239258766	0	1	833	0
chr2	239275472	239276500	REMC_MyoepithelialBreast.90249	0	.	239275472	239276500	0	1	1028	0
chr2	239285070	239286903	REMC_MyoepithelialBreast.90251	0	.	239285070	239286903	0	1	1833	0
chr2	239286552	239287298	prostate_carcinoma.97946	0	.	239286552	239287298	0	1	746	0
chr2	239286583	239287304	prostate_normal.58513	0	.	239286583	239287304	0	1	721	0
chr2	239300994	239301497	A549_Myers.85749	0	.	239300994	239301497	0	1	503	0
chr2	239417480	239420969	REMC_BreastStem.48782	0	.	239417480	239420969	0	1	3489	0
chr2	239418201	239420922	H1_polyA+.113989	0	.	239418201	239420922	0	1	2721	0
chr2	239418230	239419242	REMC_MyoepithelialBreast.90252	0	.	239418230	239419242	0	1	1012	0
chr2	239418262	239419899	BT20_Thompson.21957	0	.	239418262	239419899	0	1	1637	0
chr2	239418313	239420970	prostate_carcinoma.97949	0	.	239418313	239420970	0	1	2657	0
chr2	239419034	239420945	MCF10A_Thompson.21277	0	.	239419034	239420945	0	1	1911	0
chr2	239419823	239420941	A549_Myers.85752	0	.	239419823	239420941	0	1	1118	0
chr2	239419829	239420962	prostate_normal.58515	0	.	239419829	239420962	0	1	1133	0
chr2	239419966	239420921	HIT000502075	0	-	239419966	239420921	0	1	955	0
chr2	239419974	239420961	BT20_Thompson.21958	0	.	239419974	239420961	0	1	987	0
chr2	239455480	239456298	REMC_MyoepithelialBreast.90255	0	.	239455480	239456298	0	1	818	0
chr2	239456527	239458204	REMC_MyoepithelialBreast.90256	0	.	239456527	239458204	0	1	1677	0
chr2	239457921	239458784	A549_Myers.85753	0	.	239457921	239458784	0	1	863	0
chr2	239463614	239464263	prostate_carcinoma.97953	0	.	239463614	239464263	0	1	649	0
chr2	239463627	239464218	prostate_normal.58517	0	.	239463627	239464218	0	1	591	0
chr2	239465005	239466866	REMC_BreastStem.48790	0	.	239465005	239466866	0	1	1861	0
chr2	239496919	239497889	prostate_carcinoma.97955	0	.	239496919	239497889	0	1	970	0
chr2	239497890	239498412	A549_Myers.85757	0	.	239497890	239498412	0	1	522	0
chr2	239497905	239499046	REMC_BreastStem.48784	0	.	239497905	239499046	0	1	1141	0
chr2	239498283	239498748	prostate_normal.58519	0	.	239498283	239498748	0	1	465	0
chr2	239498483	239498799	prostate_carcinoma.97954	0	.	239498483	239498799	0	1	316	0
chr2	239500481	239500814	A549_Myers.85758	0	.	239500481	239500814	0	1	333	0
chr2	239500867	239502526	REMC_BreastStem.48785	0	.	239500867	239502526	0	1	1659	0
chr2	239502629	239503346	breast_Burge.39945	0	.	239502629	239503346	0	1	717	0
chr2	239502634	239505547	REMC_BreastStem.48786	0	.	239502634	239505547	0	1	2913	0
chr2	239505933	239512902	Rinn_00002681	0	-	239505933	239512902	0	10	216,121,94,95,263,344,1319,831,184,32	0,426,1186,2081,2308,2694,3771,5556,6636,6937
chr2	239505934	239512902	ENST00000455228	0	-	239505934	239512902	0	10	215,120,93,94,262,343,1318,830,183,31	0,426,1186,2081,2308,2694,3771,5556,6636,6937
chr2	239505934	239512902	HIT000045740	0	-	239505934	239512902	0	10	215,124,93,90,266,343,1318,830,183,31	0,422,1186,2081,2304,2694,3771,5556,6636,6937
chr2	239505934	239512902	NR_034162	0	-	239505934	239512902	0	10	215,120,93,94,262,343,1318,830,183,31	0,426,1186,2081,2308,2694,3771,5556,6636,6937
chr2	239507449	239507811	prostate_carcinoma.97956	0	.	239507449	239507811	0	1	362	0
chr2	239511839	239512246	A549_Myers.85760	0	.	239511839	239512246	0	1	407	0
chr2	239524277	239525144	REMC_BreastStem.48791	0	.	239524277	239525144	0	1	867	0
chr2	239525517	239526814	REMC_BreastStem.48792	0	.	239525517	239526814	0	1	1297	0
chr2	239557931	239558429	A549_Myers.85765	0	.	239557931	239558429	0	1	498	0
chr2	239572700	239573064	A549_Myers.85766	0	.	239572700	239573064	0	1	364	0
chr2	239611922	239612409	A549_Myers.85768	0	.	239611922	239612409	0	1	487	0
chr2	239621669	239622549	A549_Myers.85769	0	.	239621669	239622549	0	1	880	0
chr2	239623082	239623424	A549_Myers.85770	0	.	239623082	239623424	0	1	342	0
chr2	240026282	240027911	brain_AmbionMAQC.44330	0	.	240026282	240027911	0	1	1629	0
chr2	240029301	240030138	brain_AmbionMAQC.44331	0	.	240029301	240030138	0	1	837	0
chr2	240054044	240054473	A549_Myers.85865	0	.	240054044	240054473	0	1	429	0
chr2	240091137	240091954	B_cells_Cheung.192914	0	.	240091137	240091954	0	1	817	0
chr2	240093507	240094083	B_Cells_Pritchard.3151625	0	.	240093507	240094083	0	1	576	0
chr2	240096256	240096710	A549_Myers.85867	0	.	240096256	240096710	0	1	454	0
chr2	240109154	240109469	A549_Myers.85868	0	.	240109154	240109469	0	1	315	0
chr2	240113234	240113629	A549_Myers.85869	0	.	240113234	240113629	0	1	395	0
chr2	240118942	240119264	A549_Myers.85870	0	.	240118942	240119264	0	1	322	0
chr2	240124753	240150675	pHIT000005895	0	+	240124753	240150675	0	4	102,28,192,86	0,4382,23398,25836
chr2	240131484	240131984	A549_Myers.85871	0	.	240131484	240131984	0	1	500	0
chr2	240194092	240196592	pHIT000005897	0	-	240194092	240196592	0	3	135,99,94	0,2100,2406
chr2	240213787	240214144	B_Cells_Pritchard.3151947	0	.	240213787	240214144	0	1	357	0
chr2	240229116	240229742	prostate_carcinoma.98009	0	.	240229116	240229742	0	1	626	0
chr2	240229152	240229726	BT474_Burge_Thompson.34171	0	.	240229152	240229726	0	1	574	0
chr2	240253559	240254087	A549_Myers.85874	0	.	240253559	240254087	0	1	528	0
chr2	240309805	240310976	A549_Myers.85878	0	.	240309805	240310976	0	1	1171	0
chr2	240406980	240444334	pHIT000074209	0	+	240406980	240444334	0	2	79,908	0,36446
chr2	240414541	240415754	REMC_MyoepithelialBreast.90264	0	.	240414541	240415754	0	1	1213	0
chr2	240415262	240421172	prostate_carcinoma.98011	0	+	240415262	240421172	0	2	14,2164	0,3746
chr2	240417181	240420793	REMC_MyoepithelialBreast.90265	0	.	240417181	240420793	0	1	3612	0
chr2	240417391	240418634	prostate_normal.58562	0	.	240417391	240418634	0	1	1243	0
chr2	240418696	240420895	melanoma_Garraway_short_term_cultures.68303	0	.	240418696	240420895	0	1	2199	0
chr2	240418769	240421172	prostate_carcinoma.98010	0	.	240418769	240421172	0	1	2403	0
chr2	240419122	240420174	MIP101.68468	0	.	240419122	240420174	0	1	1052	0
chr2	240419145	240420662	prostate_normal.58563	0	.	240419145	240420662	0	1	1517	0
chr2	240419412	240420089	brain_AmbionMAQC.44335	0	.	240419412	240420089	0	1	677	0
chr2	240420022	240421203	H1_polyA+.114078	0	.	240420022	240421203	0	1	1181	0
chr2	240420054	240420599	B_Cells_Pritchard.3152489	0	.	240420054	240420599	0	1	545	0
chr2	240420159	240420783	brain_AmbionMAQC.44336	0	.	240420159	240420783	0	1	624	0
chr2	240422657	240423110	prostate_carcinoma.98015	0	.	240422657	240423110	0	1	453	0
chr2	240430354	240431312	REMC_MyoepithelialBreast.90268	0	.	240430354	240431312	0	1	958	0
chr2	240437691	240438475	REMC_MyoepithelialBreast.90271	0	.	240437691	240438475	0	1	784	0
chr2	240442114	240445104	MIP101.68470	0	.	240442114	240445104	0	1	2990	0
chr2	240442335	240444262	REMC_MyoepithelialBreast.90274	0	.	240442335	240444262	0	1	1927	0
chr2	240442346	240443830	B_Cells_Pritchard.3152559	0	.	240442346	240443830	0	1	1484	0
chr2	240442398	240445004	REMC_LuminalBreast.96976	0	.	240442398	240445004	0	1	2606	0
chr2	240442770	240443705	melanoma_Garraway_short_term_cultures.68306	0	.	240442770	240443705	0	1	935	0
chr2	240442810	240443680	HepG2_Caltech_ENCODE.37911	0	.	240442810	240443680	0	1	870	0
chr2	240442876	240444400	prostate_carcinoma.98019	0	.	240442876	240444400	0	1	1524	0
chr2	240443056	240444764	H1_polyA+.114081	0	.	240443056	240444764	0	1	1708	0
chr2	240443392	240444334	pHIT000005902	0	+	240443392	240444334	0	1	942	0
chr2	240443462	240443786	B_cells_Cheung.192924	0	.	240443462	240443786	0	1	324	0
chr2	240443925	240444654	B_cells_Cheung.192925	0	.	240443925	240444654	0	1	729	0
chr2	240444778	240445616	prostate_carcinoma.98020	0	.	240444778	240445616	0	1	838	0
chr2	240645016	240645579	A549_Myers.85918	0	.	240645016	240645579	0	1	563	0
chr2	240683859	240684303	A549_Myers.85919	0	.	240683859	240684303	0	1	444	0
chr2	240712399	240713044	H1_polyA+.114165	0	.	240712399	240713044	0	1	645	0
chr2	240725698	240726040	A549_Myers.85922	0	.	240725698	240726040	0	1	342	0
chr2	240734485	240734915	A549_Myers.85924	0	.	240734485	240734915	0	1	430	0
chr2	240737686	240749340	pHIT000005907	0	-	240737686	240749340	0	3	68,241,107	0,10803,11547
chr2	240748533	240748955	A549_Myers.85925	0	.	240748533	240748955	0	1	422	0
chr2	240751902	240752346	A549_Myers.85926	0	.	240751902	240752346	0	1	444	0
chr2	240777872	240787766	pHIT000005908	0	-	240777872	240787766	0	4	176,89,85,76	0,1398,1797,9818
chr2	240782225	240786141	REMC_MyoepithelialBreast.90308	0	.	240782225	240786141	0	1	3916	0
chr2	240788759	240823266	pHIT000005909	0	-	240788759	240823266	0	7	77,27,44,92,101,179,71	0,5054,9264,9953,15719,26621,34436
chr2	240790793	240791719	REMC_MyoepithelialBreast.90312	0	.	240790793	240791719	0	1	926	0
chr2	240791855	240793576	REMC_MyoepithelialBreast.90313	0	.	240791855	240793576	0	1	1721	0
chr2	240807303	240808784	REMC_MyoepithelialBreast.90317	0	.	240807303	240808784	0	1	1481	0
chr2	240809878	240830226	REMC_MyoepithelialBreast.90315	0	-	240809878	240830226	0	5	5923,119,78,86,529	0,6745,9955,12196,19819
chr2	240821072	240822564	A549_Myers.85930	0	-	240821072	240822564	0	2	492,90	0,1402
chr2	240821765	240822098	A549_Myers.85932	0	.	240821765	240822098	0	1	333	0
chr2	240822149	240822564	A549_Myers.85931	0	.	240822149	240822564	0	1	415	0
chr2	240830741	240835554	REMC_MyoepithelialBreast.90320	0	.	240830741	240835554	0	1	4813	0
chr2	240830840	240835211	MIP101.68500	0	.	240830840	240835211	0	1	4371	0
chr2	240832091	240838428	HepG2_Caltech_ENCODE.37936	0	.	240832091	240838428	0	1	6337	0
chr2	240833287	240835137	prostate_carcinoma.98105	0	.	240833287	240835137	0	1	1850	0
chr2	240834076	240834478	A549_Myers.85934	0	.	240834076	240834478	0	1	402	0
chr2	240835320	240844167	MIP101.68501	0	.	240835320	240844167	0	1	8847	0
chr2	240835668	240837251	REMC_MyoepithelialBreast.90321	0	.	240835668	240837251	0	1	1583	0
chr2	240837494	240837895	A549_Myers.85935	0	.	240837494	240837895	0	1	401	0
chr2	240838482	240840029	A549_Myers.85936	0	.	240838482	240840029	0	1	1547	0
chr2	240839159	240844472	HepG2_Caltech_ENCODE.37937	0	.	240839159	240844472	0	1	5313	0
chr2	240839159	240844472	HepG2_Caltech_ENCODE.37938	0	-	240839159	240844472	0	2	4909,281	0,5032
chr2	240839695	240843329	prostate_carcinoma.98106	0	.	240839695	240843329	0	1	3634	0
chr2	240839908	240844156	REMC_MyoepithelialBreast.90324	0	.	240839908	240844156	0	1	4248	0
chr2	240839908	240844533	REMC_MyoepithelialBreast.90323	0	-	240839908	240844533	0	3	2260,175,342	0,3985,4283
chr2	240872790	240873249	A549_Myers.85940	0	.	240872790	240873249	0	1	459	0
chr2	240887240	240887593	A549_Myers.85941	0	.	240887240	240887593	0	1	353	0
chr2	240890123	240890462	A549_Myers.85943	0	.	240890123	240890462	0	1	339	0
chr2	240896966	240897461	A549_Myers.85944	0	.	240896966	240897461	0	1	495	0
chr2	240897141	240897664	REMC_MyoepithelialBreast.90327	0	.	240897141	240897664	0	1	523	0
chr2	240908110	240908684	A549_Myers.85945	0	.	240908110	240908684	0	1	574	0
chr2	240910419	240913590	REMC_MyoepithelialBreast.90330	0	.	240910419	240913590	0	1	3171	0
chr2	240911910	240912445	A549_Myers.85946	0	.	240911910	240912445	0	1	535	0
chr2	240928228	240928675	A549_Myers.85949	0	.	240928228	240928675	0	1	447	0
chr2	240931511	240932552	REMC_MyoepithelialBreast.90334	0	.	240931511	240932552	0	1	1041	0
chr2	240937173	240937714	REMC_MyoepithelialBreast.90336	0	.	240937173	240937714	0	1	541	0
chr2	240937836	240938969	REMC_MyoepithelialBreast.90337	0	.	240937836	240938969	0	1	1133	0
chr2	240939618	240940620	REMC_MyoepithelialBreast.90338	0	.	240939618	240940620	0	1	1002	0
chr2	240943117	240955605	REMC_MyoepithelialBreast.90339	0	+	240943117	240955605	0	3	829,3570,1654	0,1008,10834
chr2	240947872	240950716	REMC_MyoepithelialBreast.90340	0	.	240947872	240950716	0	1	2844	0
chr2	240954852	240955450	A549_Myers.85953	0	.	240954852	240955450	0	1	598	0
chr2	240956403	240957488	REMC_MyoepithelialBreast.90341	0	.	240956403	240957488	0	1	1085	0
chr2	240956783	240957449	A549_Myers.85954	0	.	240956783	240957449	0	1	666	0
chr2	240958289	240958707	A549_Myers.85955	0	.	240958289	240958707	0	1	418	0
chr2	240960698	240961007	A549_Myers.85957	0	.	240960698	240961007	0	1	309	0
chr2	240961533	240961884	A549_Myers.85958	0	.	240961533	240961884	0	1	351	0
chr2	240961953	240962758	A549_Myers.85959	0	.	240961953	240962758	0	1	805	0
chr2	240963179	240963603	A549_Myers.85960	0	.	240963179	240963603	0	1	424	0
chr2	240963731	240965105	A549_Myers.85961	0	.	240963731	240965105	0	1	1374	0
chr2	240965032	240966394	REMC_MyoepithelialBreast.90342	0	.	240965032	240966394	0	1	1362	0
chr2	240969364	240971823	melanoma_Garraway_short_term_cultures.68319	0	.	240969364	240971823	0	1	2459	0
chr2	240969524	240970280	A549_Myers.85966	0	.	240969524	240970280	0	1	756	0
chr2	240969531	240975816	Rinn_00004629	0	-	240969531	240975816	0	4	2869,118,81,77	0,5094,5962,6208
chr2	240971209	240971521	HeLa_Bartel_miR-155_12hr.32112	0	.	240971209	240971521	0	1	312	0
chr2	240971399	240971744	A549_Myers.85969	0	.	240971399	240971744	0	1	345	0
chr2	240974033	240974976	B_Cells_Pritchard.3154277	0	.	240974033	240974976	0	1	943	0
chr2	240974132	240974964	A549_Myers.85971	0	.	240974132	240974964	0	1	832	0
chr2	240974155	240974954	melanoma_Garraway_short_term_cultures.68321	0	.	240974155	240974954	0	1	799	0
chr2	240975957	240976416	A549_Myers.85974	0	.	240975957	240976416	0	1	459	0
chr2	240976993	240977679	A549_Myers.85975	0	.	240976993	240977679	0	1	686	0
chr2	240977999	240978313	A549_Myers.85976	0	.	240977999	240978313	0	1	314	0
chr2	240978474	240979073	A549_Myers.85977	0	.	240978474	240979073	0	1	599	0
chr2	240979573	240979938	A549_Myers.85978	0	.	240979573	240979938	0	1	365	0
chr2	240980073	240980800	A549_Myers.85979	0	.	240980073	240980800	0	1	727	0
chr2	241000547	241000966	A549_Myers.85982	0	.	241000547	241000966	0	1	419	0
chr2	241001018	241002017	A549_Myers.85983	0	.	241001018	241002017	0	1	999	0
chr2	241012323	241013315	REMC_MyoepithelialBreast.90346	0	.	241012323	241013315	0	1	992	0
chr2	241015500	241016589	prostate_carcinoma.98108	0	.	241015500	241016589	0	1	1089	0
chr2	241016842	241017586	HeLa_polyA+_Chen.35236	0	.	241016842	241017586	0	1	744	0
chr2	241017160	241018593	BT20_Thompson.21972	0	.	241017160	241018593	0	1	1433	0
chr2	241017684	241018174	HeLa_polyA+_Chen.35234	0	.	241017684	241018174	0	1	490	0
chr2	241018778	241019151	A549_Myers.85988	0	.	241018778	241019151	0	1	373	0
chr2	241018953	241020295	REMC_MyoepithelialBreast.90350	0	.	241018953	241020295	0	1	1342	0
chr2	241018986	241019856	HeLa_polyA+_Chen.35237	0	.	241018986	241019856	0	1	870	0
chr2	241019288	241019796	prostate_carcinoma.98109	0	.	241019288	241019796	0	1	508	0
chr2	241019855	241020412	A549_Myers.85989	0	.	241019855	241020412	0	1	557	0
chr2	241020486	241020873	A549_Myers.85990	0	.	241020486	241020873	0	1	387	0
chr2	241021083	241021415	H1_rRNA-depleted_UCSD_REMC.85950	0	.	241021083	241021415	0	1	332	0
chr2	241021127	241021734	HeLa_polyA+_Chen.35238	0	.	241021127	241021734	0	1	607	0
chr2	241021385	241022723	HeLa_polyA-_Chen.18408	0	.	241021385	241022723	0	1	1338	0
chr2	241057302	241058671	K562.45084	0	.	241057302	241058671	0	1	1369	0
chr2	241057441	241058121	A549_Myers.86019	0	.	241057441	241058121	0	1	680	0
chr2	241057598	241058410	brain_AmbionMAQC.44355	0	.	241057598	241058410	0	1	812	0
chr2	241061169	241062190	REMC_LuminalBreast.97019	0	.	241061169	241062190	0	1	1021	0
chr2	241061259	241062184	melanoma_Garraway_short_term_cultures.68329	0	.	241061259	241062184	0	1	925	0
chr2	241061609	241062235	HepG2_Caltech_ENCODE.37941	0	.	241061609	241062235	0	1	626	0
chr2	241061611	241062177	HeLa_polyA+_Chen.35241	0	.	241061611	241062177	0	1	566	0
chr2	241061611	241062227	B_cells_Cheung.193057	0	.	241061611	241062227	0	1	616	0
chr2	241061630	241062208	prostate_carcinoma.98137	0	.	241061630	241062208	0	1	578	0
chr2	241061676	241062201	B_Cells_Pritchard.3154523	0	.	241061676	241062201	0	1	525	0
chr2	241061769	241062195	MIP101.68514	0	.	241061769	241062195	0	1	426	0
chr2	241063787	241065235	B_cells_Cheung.193060	0	.	241063787	241065235	0	1	1448	0
chr2	241065862	241066423	CD4_Plagnol_activated.64539	0	.	241065862	241066423	0	1	561	0
chr2	241066087	241066399	MCF7_Burge_Thompson.31446	0	.	241066087	241066399	0	1	312	0
chr2	241170945	241171788	REMC_MyoepithelialBreast.90490	0	.	241170945	241171788	0	1	843	0
chr2	241221625	241223033	REMC_LuminalBreast.97050	0	.	241221625	241223033	0	1	1408	0
chr2	241289224	241290181	B_Cells_Pritchard.3154889	0	.	241289224	241290181	0	1	957	0
chr2	241292914	241293640	MeI_Garraway.17454	0	.	241292914	241293640	0	1	726	0
chr2	241428361	241428778	A549_Myers.86111	0	.	241428361	241428778	0	1	417	0
chr2	241438943	241439422	A549_Myers.86112	0	.	241438943	241439422	0	1	479	0
chr2	241439494	241439913	A549_Myers.86113	0	.	241439494	241439913	0	1	419	0
chr2	241445274	241445996	liver_polyA+.129188	0	.	241445274	241445996	0	1	722	0
chr2	241445337	241445653	A549_Myers.86115	0	.	241445337	241445653	0	1	316	0
chr2	241468981	241469893	REMC_MyoepithelialBreast.90534	0	.	241468981	241469893	0	1	912	0
chr2	241486887	241487879	REMC_BreastStem.48849	0	.	241486887	241487879	0	1	992	0
chr2	241505197	241506255	A549_Myers.86130	0	.	241505197	241506255	0	1	1058	0
chr2	241581832	241582605	prostate_normal.58647	0	.	241581832	241582605	0	1	773	0
chr2	241583116	241583999	prostate_normal.58648	0	.	241583116	241583999	0	1	883	0
chr2	241584201	241585916	prostate_carcinoma.105638	0	.	241584201	241585916	0	1	1715	0
chr2	241584622	241585245	prostate_normal.58649	0	.	241584622	241585245	0	1	623	0
chr2	241585039	241585488	A549_Myers.86164	0	.	241585039	241585488	0	1	449	0
chr2	242098881	242100774	H1_polyA+.114352	0	.	242098881	242100774	0	1	1893	0
chr2	242098936	242100836	B_cells_Cheung.193163	0	.	242098936	242100836	0	1	1900	0
chr2	242099186	242100833	REMC_LuminalBreast.97202	0	.	242099186	242100833	0	1	1647	0
chr2	242104118	242105065	REMC_MyoepithelialBreast.90593	0	.	242104118	242105065	0	1	947	0
chr2	242104206	242106132	melanoma_Garraway_short_term_cultures.68496	0	.	242104206	242106132	0	1	1926	0
chr2	242104259	242106632	B_Cells_Pritchard.3156609	0	.	242104259	242106632	0	1	2373	0
chr2	242104351	242105913	B_cells_Cheung.193167	0	.	242104351	242105913	0	1	1562	0
chr2	242104462	242105129	BT474_Burge_Thompson.34290	0	.	242104462	242105129	0	1	667	0
chr2	242104487	242105849	ovary_Raymond.244974	0	-	242104487	242105849	0	3	264,175,165	0,814,1197
chr2	242104545	242105023	MeWo_Garraway.36247	0	.	242104545	242105023	0	1	478	0
chr2	242105202	242106014	BT474_Burge_Thompson.34291	0	.	242105202	242106014	0	1	812	0
chr2	242105229	242105836	BT20_Thompson.22003	0	.	242105229	242105836	0	1	607	0
chr2	242105264	242105802	REMC_MyoepithelialBreast.90594	0	.	242105264	242105802	0	1	538	0
chr2	242105500	242105816	brain_AmbionMAQC.44389	0	.	242105500	242105816	0	1	316	0
chr2	242122592	242123255	A549_Myers.86284	0	.	242122592	242123255	0	1	663	0
chr2	242127443	242129906	pHIT000005948	0	-	242127443	242129906	0	3	42,387,61	0,1224,2402
chr2	242129062	242129700	A549_Myers.86285	0	.	242129062	242129700	0	1	638	0
chr2	242129776	242130676	A549_Myers.86286	0	.	242129776	242130676	0	1	900	0
chr2	242132185	242141181	HepG2_Caltech_ENCODE.37976	0	-	242132185	242141181	0	2	747,320	0,8676
chr2	242133651	242138143	HepG2_Caltech_ENCODE.37979	0	-	242133651	242138143	0	2	3929,489	0,4003
chr2	242134793	242136029	kidney_Gilad.83722	0	-	242134793	242136029	0	2	463,55	0,1181
chr2	242134793	242135280	testes_Burge.52622	0	.	242134793	242135280	0	1	487	0
chr2	242134839	242135335	A549_Myers.86287	0	.	242134839	242135335	0	1	496	0
chr2	242134859	242135683	H1_polyA+.114329	0	.	242134859	242135683	0	1	824	0
chr2	242135364	242135690	MDAMB231_Thompson.22002	0	.	242135364	242135690	0	1	326	0
chr2	242135970	242137123	MDAMB231_Thompson.22001	0	.	242135970	242137123	0	1	1153	0
chr2	242138314	242141181	HepG2_Caltech_ENCODE.37977	0	.	242138314	242141181	0	1	2867	0
chr2	242139970	242141245	prostate_carcinoma.99889	0	.	242139970	242141245	0	1	1275	0
chr2	242140097	242140524	A549_Myers.86289	0	.	242140097	242140524	0	1	427	0
chr2	242140266	242141011	prostate_normal.59628	0	.	242140266	242141011	0	1	745	0
chr2	242140767	242141068	liver_polyA+.129423	0	.	242140767	242141068	0	1	301	0
chr2	242140843	242141196	A549_Myers.86290	0	.	242140843	242141196	0	1	353	0
chr2	242141652	242143310	prostate_carcinoma.99890	0	.	242141652	242143310	0	1	1658	0
chr2	242163673	242167333	HIT000044934	0	+	242163673	242167333	0	1	3660	0
chr2	242163698	242164405	HME_Burge.40314	0	.	242163698	242164405	0	1	707	0
chr2	242163783	242164451	MeWo_Garraway.36248	0	.	242163783	242164451	0	1	668	0
chr2	242163958	242164406	colon_Burge.37464	0	.	242163958	242164406	0	1	448	0
chr2	242163977	242164295	breast_Burge.40061	0	.	242163977	242164295	0	1	318	0
chr2	242164333	242165224	A549_Myers.86299	0	.	242164333	242165224	0	1	891	0
chr2	242164530	242165242	MIP101.68683	0	.	242164530	242165242	0	1	712	0
chr2	242164590	242167669	REMC_BreastStem.48865	0	.	242164590	242167669	0	1	3079	0
chr2	242165678	242168382	pHIT000005954	0	+	242165678	242168382	0	2	76,596	0,2108
chr2	242169889	242171237	REMC_LuminalBreast.97205	0	.	242169889	242171237	0	1	1348	0
chr2	242275875	242282285	CD4_Plagnol_resting.62954	0	+	242275875	242282285	0	3	275,699,83	0,2167,6327
chr2	242275887	242282280	MCF7_Burge_Thompson.31545	0	+	242275887	242282280	0	3	263,699,78	0,2155,6315
chr2	242275905	242282221	K562.45139	0	+	242275905	242282221	0	3	245,816,19	0,2020,6297
chr2	242275909	242282247	adipose_Burge.38351	0	+	242275909	242282247	0	3	241,699,45	0,2133,6293
chr2	242275912	242282236	ZR751_Thompson.23934	0	+	242275912	242282236	0	3	238,699,34	0,2130,6290
chr2	242275942	242278740	A549_Myers.86319	0	+	242275942	242278740	0	2	208,698	0,2100
chr2	242277241	242282241	HeLa_polyA+_Chen.35335	0	+	242277241	242282241	0	2	1500,39	0,4961
chr2	242277559	242278918	liver_polyA+.129462	0	.	242277559	242278918	0	1	1359	0
chr2	242277856	242278288	IMR90_UCSD_REMC.48808	0	-	242277856	242278288	0	1	432	0
chr2	242277892	242282242	BT20_Thompson.22013	0	+	242277892	242282242	0	2	849,40	0,4310
chr2	242278005	242278915	T47D_Burge_Thompson.28942	0	.	242278005	242278915	0	1	910	0
chr2	242278024	242278768	H9_polyA+.45097	0	.	242278024	242278768	0	1	744	0
chr2	242278045	242278864	kidney_Gilad.83759	0	.	242278045	242278864	0	1	819	0
chr2	242278049	242278727	MeI_Garraway.17469	0	.	242278049	242278727	0	1	678	0
chr2	242278049	242278479	lymph_node_Burge.49723	0	.	242278049	242278479	0	1	430	0
chr2	242278049	242278737	testes_Burge.52666	0	.	242278049	242278737	0	1	688	0
chr2	242278058	242278780	NEC_from_H9.74273	0	.	242278058	242278780	0	1	722	0
chr2	242278083	242278736	skeletal_muscle_Burge.28961	0	.	242278083	242278736	0	1	653	0
chr2	242281271	242281730	HepG2_Caltech_ENCODE.38022	0	.	242281271	242281730	0	1	459	0
chr2	242283066	242285420	REMC_LuminalBreast.97466	0	.	242283066	242285420	0	1	2354	0
chr2	242283068	242285111	REMC_MyoepithelialBreast.90758	0	.	242283068	242285111	0	1	2043	0
chr2	242284329	242290005	HepG2_Caltech_ENCODE.38024	0	-	242284329	242290005	0	2	314,393	0,5283
chr2	242284384	242284818	CD4_Plagnol_resting.62957	0	.	242284384	242284818	0	1	434	0
chr2	242284474	242284821	melanoma_Garraway_short_term_cultures.68518	0	.	242284474	242284821	0	1	347	0
chr2	242318685	242319958	B_Cells_Pritchard.3156971	0	-	242318685	242319958	0	1	1273	0
chr2	242318909	242319704	B_Cells_Pritchard.3156969	0	+	242318909	242319704	0	2	239,492	0,303
chr2	242319002	242319628	B_cells_Cheung.193208	0	.	242319002	242319628	0	1	626	0
chr2	242319240	242319602	testes_Burge.52656	0	.	242319240	242319602	0	1	362	0
chr2	242358178	242358961	liver_polyA+.129492	0	.	242358178	242358961	0	1	783	0
chr2	242358528	242360309	MCF7_Burge_Thompson.31561	0	.	242358528	242360309	0	1	1781	0
chr2	242358533	242360333	BT474_Burge_Thompson.34393	0	.	242358533	242360333	0	1	1800	0
chr2	242358553	242359672	BT20_Thompson.22019	0	.	242358553	242359672	0	1	1119	0
chr2	242358776	242359103	MB435_Burge.42992	0	.	242358776	242359103	0	1	327	0
chr2	242359119	242359620	K562.45149	0	.	242359119	242359620	0	1	501	0
chr2	242359175	242359642	brain_AmbionMAQC.44422	0	.	242359175	242359642	0	1	467	0
chr2	242360737	242361867	B_Cells_Pritchard.3157011	0	+	242360737	242361867	0	1	1130	0
chr2	242408902	242409380	B_cells_Cheung.193224	0	.	242408902	242409380	0	1	478	0
chr2	242411012	242414126	B_Cells_Pritchard.3157161	0	.	242411012	242414126	0	1	3114	0
chr2	242411025	242412915	B_cells_Cheung.193225	0	.	242411025	242412915	0	1	1890	0
chr2	242413277	242413703	prostate_carcinoma.98202	0	.	242413277	242413703	0	1	426	0
chr2	242413304	242414041	MIP101.68657	0	.	242413304	242414041	0	1	737	0
chr2	242413318	242413727	B_cells_Cheung.193226	0	.	242413318	242413727	0	1	409	0
chr2	242413779	242414976	prostate_carcinoma.98203	0	-	242413779	242414976	0	2	298,104	0,1093
chr2	242414719	242415135	liver_polyA+.129506	0	.	242414719	242415135	0	1	416	0
chr2	242425487	242426755	B_cells_Cheung.193228	0	-	242425487	242426755	0	2	116,355	0,913
chr2	242432579	242434794	B_cells_Cheung.193235	0	.	242432579	242434794	0	1	2215	0
chr2	242434875	242436696	B_cells_Cheung.193236	0	.	242434875	242436696	0	1	1821	0
chr2	242435203	242435861	Rinn_00003136	0	+	242435203	242435861	0	2	100,473	0,185
chr2	242451161	242453234	prostate_normal.58690	0	.	242451161	242453234	0	1	2073	0
chr2	242451471	242451846	liver_polyA+.129514	0	.	242451471	242451846	0	1	375	0
chr2	242451653	242453375	K562.45162	0	.	242451653	242453375	0	1	1722	0
chr2	242451683	242453064	H1_polyA+.114357	0	.	242451683	242453064	0	1	1381	0
chr2	242452218	242452645	liver_polyA+.129515	0	.	242452218	242452645	0	1	427	0
chr2	242452732	242453243	liver_polyA+.129516	0	.	242452732	242453243	0	1	511	0
chr2	242452837	242453144	CD4_Plagnol_activated.64728	0	.	242452837	242453144	0	1	307	0
chr2	242453472	242454236	CD4_Plagnol_resting.62810	0	.	242453472	242454236	0	1	764	0
chr2	242453503	242454833	prostate_carcinoma.98211	0	.	242453503	242454833	0	1	1330	0
chr2	242453580	242454738	CD4_Plagnol_activated.64729	0	.	242453580	242454738	0	1	1158	0
chr2	242453665	242454406	liver_polyA+.129517	0	.	242453665	242454406	0	1	741	0
chr2	242453705	242454178	K562.45164	0	.	242453705	242454178	0	1	473	0
chr2	242453793	242454262	prostate_normal.58691	0	.	242453793	242454262	0	1	469	0
chr2	242454394	242454828	prostate_normal.58692	0	.	242454394	242454828	0	1	434	0
chr2	242455043	242457077	B_cells_Cheung.193240	0	.	242455043	242457077	0	1	2034	0
chr2	242457487	242457870	B_cells_Cheung.193241	0	.	242457487	242457870	0	1	383	0
chr2	242471668	242481160	B_Cells_Pritchard.3157257	0	+	242471668	242481160	0	5	634,164,76,851,1622	0,1121,1715,6899,7870
chr2	242471875	242473501	A549_Myers.86373	0	.	242471875	242473501	0	1	1626	0
chr2	242472557	242472967	MB435_Burge.43005	0	.	242472557	242472967	0	1	410	0
chr2	242472715	242473538	ZR751_Thompson.23940	0	.	242472715	242473538	0	1	823	0
chr2	242472755	242473883	MIP101.68658	0	.	242472755	242473883	0	1	1128	0
chr2	242472786	242474593	REMC_LuminalBreast.97315	0	.	242472786	242474593	0	1	1807	0
chr2	242473360	242479270	CD4_Plagnol_resting.62813	0	+	242473360	242479270	0	2	99,703	0,5207
chr2	242474715	242476026	REMC_LuminalBreast.97316	0	.	242474715	242476026	0	1	1311	0
chr2	242475022	242478369	H1_polyA+.114360	0	.	242475022	242478369	0	1	3347	0
chr2	242475056	242479190	MIP101.68659	0	.	242475056	242479190	0	1	4134	0
chr2	242476564	242476887	B_cells_Cheung.193253	0	.	242476564	242476887	0	1	323	0
chr2	242477008	242478001	REMC_LuminalBreast.97317	0	.	242477008	242478001	0	1	993	0
chr2	242478030	242479285	CD4_Plagnol_activated.64731	0	.	242478030	242479285	0	1	1255	0
chr2	242478564	242479270	MB435_Burge.43017	0	.	242478564	242479270	0	1	706	0
chr2	242479543	242479854	MCF7_Burge_Thompson.31566	0	.	242479543	242479854	0	1	311	0
chr2	242479610	242481767	REMC_MyoepithelialBreast.90606	0	.	242479610	242481767	0	1	2157	0
chr2	242479698	242482181	REMC_LuminalBreast.97318	0	.	242479698	242482181	0	1	2483	0
chr2	242480093	242481467	K562.45167	0	.	242480093	242481467	0	1	1374	0
chr2	242481219	242482155	H1_polyA+.114363	0	.	242481219	242482155	0	1	936	0
chr2	242481239	242484505	BT20_Thompson.22022	0	.	242481239	242484505	0	1	3266	0
chr2	242481243	242483902	melanoma_Garraway_short_term_cultures.68537	0	.	242481243	242483902	0	1	2659	0
chr2	242481244	242481950	MCF7_Burge_Thompson.31567	0	.	242481244	242481950	0	1	706	0
chr2	242481249	242482567	CD4_Plagnol_resting.62816	0	.	242481249	242482567	0	1	1318	0
chr2	242481250	242482703	CD4_Plagnol_activated.64733	0	.	242481250	242482703	0	1	1453	0
chr2	242481255	242484645	MIP101.68661	0	.	242481255	242484645	0	1	3390	0
chr2	242481261	242482176	liver_polyA+.129523	0	.	242481261	242482176	0	1	915	0
chr2	242481264	242482146	lymph_node_Burge.49513	0	.	242481264	242482146	0	1	882	0
chr2	242481267	242481679	CD4_Snyder.73624	0	.	242481267	242481679	0	1	412	0
chr2	242481319	242482086	A549_Myers.86376	0	.	242481319	242482086	0	1	767	0
chr2	242481614	242482211	K562.45168	0	.	242481614	242482211	0	1	597	0
chr2	242482134	242483833	REMC_MyoepithelialBreast.90607	0	.	242482134	242483833	0	1	1699	0
chr2	242482337	242483479	K562.45166	0	.	242482337	242483479	0	1	1142	0
chr2	242483140	242483513	A549_Myers.86377	0	.	242483140	242483513	0	1	373	0
chr2	242483265	242483723	MB435_Burge.43015	0	.	242483265	242483723	0	1	458	0
chr2	242499256	242506910	B_Cells_Pritchard.3157273	0	.	242499256	242506910	0	1	7654	0
chr2	242499270	242504148	prostate_carcinoma.98213	0	.	242499270	242504148	0	1	4878	0
chr2	242499281	242500063	H1_polyA+.114370	0	.	242499281	242500063	0	1	782	0
chr2	242499817	242501037	prostate_normal.58702	0	.	242499817	242501037	0	1	1220	0
chr2	242500802	242502149	REMC_LuminalBreast.97322	0	.	242500802	242502149	0	1	1347	0
chr2	242500850	242502219	MIP101.68662	0	.	242500850	242502219	0	1	1369	0
chr2	242500974	242503279	H1_polyA+.114371	0	.	242500974	242503279	0	1	2305	0
chr2	242500979	242502154	melanoma_Garraway_short_term_cultures.68538	0	.	242500979	242502154	0	1	1175	0
chr2	242501070	242502504	BT20_Thompson.22024	0	.	242501070	242502504	0	1	1434	0
chr2	242501277	242502461	prostate_normal.58700	0	.	242501277	242502461	0	1	1184	0
chr2	242501521	242502024	CD4_Plagnol_resting.62819	0	.	242501521	242502024	0	1	503	0
chr2	242504265	242505320	prostate_carcinoma.98216	0	.	242504265	242505320	0	1	1055	0
chr2	242504290	242505321	B_cells_Cheung.193281	0	.	242504290	242505321	0	1	1031	0
chr2	242505099	242507094	H1_polyA+.114373	0	.	242505099	242507094	0	1	1995	0
chr2	242505309	242507108	HIT000002660	0	+	242505309	242507108	0	1	1799	0
chr2	242506402	242507517	REMC_LuminalBreast.97325	0	.	242506402	242507517	0	1	1115	0
chr2	242507747	242509984	REMC_LuminalBreast.97326	0	.	242507747	242509984	0	1	2237	0
chr2	242507771	242508736	B_Cells_Pritchard.3157277	0	.	242507771	242508736	0	1	965	0
chr2	242507821	242508937	H1_polyA+.114374	0	.	242507821	242508937	0	1	1116	0
chr2	242509202	242509529	B_cells_Cheung.193288	0	.	242509202	242509529	0	1	327	0
chr2	242520423	242521220	B_Cells_Pritchard.3157309	0	.	242520423	242521220	0	1	797	0
chr2	242523226	242524037	B_Cells_Pritchard.3157321	0	.	242523226	242524037	0	1	811	0
chr2	242526378	242527361	prostate_carcinoma.98222	0	.	242526378	242527361	0	1	983	0
chr2	242527370	242527791	A549_Myers.86382	0	.	242527370	242527791	0	1	421	0
chr2	242530044	242531383	B_Cells_Pritchard.3157353	0	.	242530044	242531383	0	1	1339	0
chr2	242534169	242534851	B_Cells_Pritchard.3157367	0	.	242534169	242534851	0	1	682	0
chr2	242535451	242536175	prostate_carcinoma.98225	0	.	242535451	242536175	0	1	724	0
chr2	242536675	242536997	prostate_normal.58706	0	.	242536675	242536997	0	1	322	0
chr2	242537637	242538468	prostate_carcinoma.98227	0	.	242537637	242538468	0	1	831	0
chr2	242538883	242539825	prostate_normal.58707	0	.	242538883	242539825	0	1	942	0
chr2	242538883	242552428	prostate_normal.58708	0	+	242538883	242552428	0	2	375,27	0,13518
chr2	242539294	242539700	A549_Myers.86383	0	.	242539294	242539700	0	1	406	0
chr2	242540849	242541270	A549_Myers.86384	0	.	242540849	242541270	0	1	421	0
chr2	242540939	242541590	B_Cells_Pritchard.3157405	0	.	242540939	242541590	0	1	651	0
chr2	242542136	242543152	prostate_carcinoma.98228	0	.	242542136	242543152	0	1	1016	0
chr2	242543633	242544355	B_Cells_Pritchard.3157415	0	.	242543633	242544355	0	1	722	0
chr2	242547141	242547716	prostate_carcinoma.98229	0	.	242547141	242547716	0	1	575	0
chr2	242556494	242559495	MIP101.68664	0	.	242556494	242559495	0	1	3001	0
chr2	242556741	242559569	prostate_carcinoma.98226	0	.	242556741	242559569	0	1	2828	0
chr2	242556746	242559472	REMC_LuminalBreast.97328	0	.	242556746	242559472	0	1	2726	0
chr2	242556747	242559573	BT474_Burge_Thompson.34321	0	.	242556747	242559573	0	1	2826	0
chr2	242556747	242559571	ZR751_Thompson.23942	0	.	242556747	242559571	0	1	2824	0
chr2	242556747	242558566	H9_polyA+.45121	0	.	242556747	242558566	0	1	1819	0
chr2	242556760	242559457	melanoma_Garraway_short_term_cultures.68539	0	.	242556760	242559457	0	1	2697	0
chr2	242557104	242559498	K562.45171	0	.	242557104	242559498	0	1	2394	0
chr2	242557431	242558552	MCF7_Burge_Thompson.31569	0	.	242557431	242558552	0	1	1121	0
chr2	242557537	242559651	liver_polyA+.129529	0	.	242557537	242559651	0	1	2114	0
chr2	242557581	242559578	CD4_Plagnol_activated.64739	0	.	242557581	242559578	0	1	1997	0
chr2	242557589	242559112	CD4_Plagnol_resting.62821	0	.	242557589	242559112	0	1	1523	0
chr2	242559893	242560673	H9_polyA+.45124	0	.	242559893	242560673	0	1	780	0
chr2	242559918	242562298	ZR751_Thompson.23944	0	.	242559918	242562298	0	1	2380	0
chr2	242559918	242560290	brain_AmbionMAQC.44432	0	.	242559918	242560290	0	1	372	0
chr2	242559920	242560803	BT474_Burge_Thompson.34322	0	.	242559920	242560803	0	1	883	0
chr2	242559925	242562600	CD4_Plagnol_activated.64740	0	.	242559925	242562600	0	1	2675	0
chr2	242559925	242560292	CD4_Plagnol_resting.62823	0	.	242559925	242560292	0	1	367	0
chr2	242559929	242563340	prostate_normal.58711	0	.	242559929	242563340	0	1	3411	0
chr2	242559935	242560282	testes_Raymond.166280	0	.	242559935	242560282	0	1	347	0
chr2	242559951	242560641	spleen_Raymond.191153	0	.	242559951	242560641	0	1	690	0
chr2	242560363	242560675	colon_Raymond.120549	0	.	242560363	242560675	0	1	312	0
chr2	242560375	242560788	testes_Raymond.166279	0	.	242560375	242560788	0	1	413	0
chr2	242560385	242562294	CD4_Plagnol_resting.62825	0	.	242560385	242562294	0	1	1909	0
chr2	242560394	242560774	MCF7_Burge_Thompson.31573	0	.	242560394	242560774	0	1	380	0
chr2	242560684	242562299	liver_polyA+.129531	0	-	242560684	242562299	0	2	867,196	0,1419
chr2	242560881	242562269	MCF7_Burge_Thompson.31574	0	.	242560881	242562269	0	1	1388	0
chr2	242561023	242563312	MIP101.68665	0	.	242561023	242563312	0	1	2289	0
chr2	242561162	242562289	REMC_LuminalBreast.97329	0	.	242561162	242562289	0	1	1127	0
chr2	242561213	242562293	melanoma_Garraway_short_term_cultures.68540	0	.	242561213	242562293	0	1	1080	0
chr2	242561506	242568100	HIT000022788	0	-	242561506	242568100	0	6	599,119,91,57,105,1199	0,692,1002,1430,1769,5395
chr2	242561907	242562290	kidney_Gilad.83801	0	.	242561907	242562290	0	1	383	0
chr2	242562500	242564694	REMC_LuminalBreast.97330	0	.	242562500	242564694	0	1	2194	0
chr2	242562743	242563304	MCF7_Burge_Thompson.31575	0	.	242562743	242563304	0	1	561	0
chr2	242562906	242564006	ZR751_Thompson.23945	0	.	242562906	242564006	0	1	1100	0
chr2	242563448	242570171	MIP101.68666	0	.	242563448	242570171	0	1	6723	0
chr2	242564438	242566150	H9_polyA+.45127	0	.	242564438	242566150	0	1	1712	0
chr2	242564891	242565801	K562.45174	0	.	242564891	242565801	0	1	910	0
chr2	242565041	242566151	CD4_Plagnol_resting.62827	0	.	242565041	242566151	0	1	1110	0
chr2	242565084	242569223	REMC_LuminalBreast.97331	0	.	242565084	242569223	0	1	4139	0
chr2	242565315	242565916	MCF7_Burge_Thompson.31576	0	.	242565315	242565916	0	1	601	0
chr2	242565467	242566094	A549_Myers.86388	0	.	242565467	242566094	0	1	627	0
chr2	242565485	242567919	BT474_Burge_Thompson.34323	0	.	242565485	242567919	0	1	2434	0
chr2	242566203	242566637	H9_polyA+.45128	0	.	242566203	242566637	0	1	434	0
chr2	242566295	242567532	K562.45175	0	.	242566295	242567532	0	1	1237	0
chr2	242567114	242567482	liver_polyA+.129538	0	.	242567114	242567482	0	1	368	0
chr2	242570280	242570811	MIP101.68667	0	.	242570280	242570811	0	1	531	0
chr2	242570938	242572420	REMC_LuminalBreast.97333	0	.	242570938	242572420	0	1	1482	0
chr2	242570983	242573898	MIP101.68668	0	.	242570983	242573898	0	1	2915	0
chr2	242571019	242571447	H9_polyA+.45131	0	.	242571019	242571447	0	1	428	0
chr2	242571443	242572377	liver_polyA+.129543	0	.	242571443	242572377	0	1	934	0
chr2	242571682	242573022	ZR751_Thompson.23948	0	.	242571682	242573022	0	1	1340	0
chr2	242571705	242572741	H9_polyA+.45132	0	.	242571705	242572741	0	1	1036	0
chr2	242571853	242572340	CD4_Plagnol_resting.62824	0	.	242571853	242572340	0	1	487	0
chr2	242576549	242594417	H1_polyA+.114358	0	.	242576549	242594417	0	1	17868	0
chr2	242576667	242579445	BT474_Burge_Thompson.34334	0	.	242576667	242579445	0	1	2778	0
chr2	242576668	242579603	B_cells_Cheung.193300	0	.	242576668	242579603	0	1	2935	0
chr2	242576672	242579453	B_Cells_Pritchard.3157455	0	.	242576672	242579453	0	1	2781	0
chr2	242576673	242579787	MIP101.68670	0	.	242576673	242579787	0	1	3114	0
chr2	242577386	242579516	HIT000022885	0	+	242577386	242579516	0	2	844,1192	0,938
chr2	242577521	242579335	H9_polyA+.45136	0	.	242577521	242579335	0	1	1814	0
chr2	242577570	242578224	A549_Myers.86390	0	.	242577570	242578224	0	1	654	0
chr2	242577983	242579677	ZR751_Thompson.23949	0	.	242577983	242579677	0	1	1694	0
chr2	242579910	242580262	ZR751_Thompson.23950	0	.	242579910	242580262	0	1	352	0
chr2	242580485	242581130	H9_polyA+.45138	0	.	242580485	242581130	0	1	645	0
chr2	242580524	242582618	B_cells_Cheung.193302	0	.	242580524	242582618	0	1	2094	0
chr2	242580530	242581121	BT474_Burge_Thompson.34330	0	.	242580530	242581121	0	1	591	0
chr2	242580634	242582065	ZR751_Thompson.23951	0	.	242580634	242582065	0	1	1431	0
chr2	242581213	242581671	H9_polyA+.45139	0	.	242581213	242581671	0	1	458	0
chr2	242581235	242582867	BT474_Burge_Thompson.34336	0	.	242581235	242582867	0	1	1632	0
chr2	242581449	242585743	MIP101.68672	0	.	242581449	242585743	0	1	4294	0
chr2	242582822	242589519	B_Cells_Pritchard.3157467	0	-	242582822	242589519	0	3	402,3189,2707	0,726,3990
chr2	242583901	242585082	H9_polyA+.45141	0	.	242583901	242585082	0	1	1181	0
chr2	242584010	242586747	B_cells_Cheung.193305	0	.	242584010	242586747	0	1	2737	0
chr2	242584739	242585927	BT474_Burge_Thompson.34338	0	.	242584739	242585927	0	1	1188	0
chr2	242585150	242585951	H9_polyA+.45142	0	.	242585150	242585951	0	1	801	0
chr2	242585170	242585961	ZR751_Thompson.23953	0	.	242585170	242585961	0	1	791	0
chr2	242585848	242590802	MIP101.68673	0	-	242585848	242590802	0	2	765,3830	0,1124
chr2	242586799	242590802	MIP101.68674	0	.	242586799	242590802	0	1	4003	0
chr2	242586899	242587587	BT474_Burge_Thompson.34340	0	.	242586899	242587587	0	1	688	0
chr2	242587658	242589376	B_cells_Cheung.193308	0	.	242587658	242589376	0	1	1718	0
chr2	242588042	242589311	H9_polyA+.45145	0	.	242588042	242589311	0	1	1269	0
chr2	242589668	242590891	ZR751_Thompson.23955	0	.	242589668	242590891	0	1	1223	0
chr2	242589668	242590317	B_cells_Cheung.193309	0	.	242589668	242590317	0	1	649	0
chr2	242589722	242590845	B_Cells_Pritchard.3157471	0	.	242589722	242590845	0	1	1123	0
chr2	242592032	242596833	HIT000046403	0	+	242592032	242596833	0	3	2265,215,1843	0,2526,2958
chr2	242592252	242594424	prostate_normal.58719	0	.	242592252	242594424	0	1	2172	0
chr2	242592353	242593480	ZR751_Thompson.23957	0	.	242592353	242593480	0	1	1127	0
chr2	242592792	242593561	MIP101.68676	0	.	242592792	242593561	0	1	769	0
chr2	242592817	242593677	BT474_Burge_Thompson.34344	0	.	242592817	242593677	0	1	860	0
chr2	242594126	242596837	XR_015732	0	+	242594126	242596837	0	2	31,2288	0,423
chr2	242594148	242595294	XR_040034	0	+	242594148	242595294	0	5	142,234,29,171,99	0,401,761,833,1047
chr2	242594514	242596833	HIT000020553	0	+	242594514	242596833	0	1	2319	0
chr2	242594519	242596837	XR_017906	0	+	242594519	242596837	0	1	2318	0
chr2	242610160	242610665	prostate_carcinoma.98232	0	.	242610160	242610665	0	1	505	0
chr2	242610397	242610716	B_cells_Cheung.193320	0	.	242610397	242610716	0	1	319	0
chr2	242611083	242611920	CD4_Plagnol_resting.62830	0	.	242611083	242611920	0	1	837	0
chr2	242611083	242622754	CD4_Plagnol_resting.62831	0	-	242611083	242622754	0	2	714,257	0,11414
chr2	242611089	242611918	CD4_Plagnol_activated.64749	0	.	242611089	242611918	0	1	829	0
chr2	242611111	242611740	testes_Burge.52691	0	.	242611111	242611740	0	1	629	0
chr2	242611111	242611489	prostate_carcinoma.98233	0	.	242611111	242611489	0	1	378	0
chr2	242612763	242620560	CD4_Plagnol_activated.64751	0	-	242612763	242620560	0	2	1878,13	0,7784
chr2	242612763	242615072	CD4_Plagnol_activated.64750	0	.	242612763	242615072	0	1	2309	0
chr2	242612914	242615088	CD4_Plagnol_resting.62834	0	.	242612914	242615088	0	1	2174	0
chr2	242617479	242619989	HIT000043194	0	+	242617479	242619989	0	1	2510	0
chr2	242620285	242621366	CD4_Plagnol_resting.62843	0	.	242620285	242621366	0	1	1081	0
chr2	242620831	242621370	CD4_Plagnol_activated.64747	0	.	242620831	242621370	0	1	539	0
chr2	242626700	242627383	prostate_normal.58721	0	.	242626700	242627383	0	1	683	0
chr2	242627107	242627417	A549_Myers.86392	0	.	242627107	242627417	0	1	310	0
chr2	242630792	242631648	prostate_carcinoma.98237	0	.	242630792	242631648	0	1	856	0
chr2	242631196	242631670	A549_Myers.86393	0	.	242631196	242631670	0	1	474	0
chr2	242648600	242650044	Rinn_00005377	0	-	242648600	242650044	0	2	1108,102	0,1342
chr2	242649342	242649647	A549_Myers.86394	0	.	242649342	242649647	0	1	305	0
chr2	242655032	242655588	B_Cells_Pritchard.3157643	0	.	242655032	242655588	0	1	556	0
chr2	242679271	242679647	A549_Myers.86396	0	.	242679271	242679647	0	1	376	0
chr2	242679955	242709881	pHIT000074066	0	+	242679955	242709881	0	5	105,93,92,103,93	0,187,7388,25507,29833
chr2	242685717	242709881	ENST00000416103	0	+	242685717	242709881	0	4	134,103,50,93	0,19745,21289,24071
chr20	285006	286178	B_cells_Cheung.193372	0	.	285006	286178	0	1	1172	0
chr20	285179	286224	HepG2_Caltech_ENCODE.38005	0	.	285179	286224	0	1	1045	0
chr20	285285	286018	MCF7_Burge_Thompson.31584	0	.	285285	286018	0	1	733	0
chr20	285516	286117	H1_polyA+.114409	0	.	285516	286117	0	1	601	0
chr20	285551	286169	BT474_Burge_Thompson.34487	0	.	285551	286169	0	1	618	0
chr20	287290	288385	B_Cells_Pritchard.3158337	0	.	287290	288385	0	1	1095	0
chr20	287305	288368	H1_polyA+.114410	0	.	287305	288368	0	1	1063	0
chr20	287410	288380	HepG2_Caltech_ENCODE.38006	0	.	287410	288380	0	1	970	0
chr20	287502	288318	prostate_carcinoma.98262	0	.	287502	288318	0	1	816	0
chr20	287907	288413	B_cells_Cheung.193374	0	.	287907	288413	0	1	506	0
chr20	288014	288324	A549_Myers.86422	0	.	288014	288324	0	1	310	0
chr20	328709	329970	REMC_BreastStem.48936	0	.	328709	329970	0	1	1261	0
chr20	328719	330076	melanoma_Garraway_short_term_cultures.68580	0	.	328719	330076	0	1	1357	0
chr20	328740	329981	MDAMB231_Thompson.22290	0	.	328740	329981	0	1	1241	0
chr20	328802	329858	prostate_carcinoma.98277	0	.	328802	329858	0	1	1056	0
chr20	328805	329800	BT474_Burge_Thompson.34364	0	.	328805	329800	0	1	995	0
chr20	334348	335265	MDAMB231_Thompson.22295	0	.	334348	335265	0	1	917	0
chr20	561836	566704	prostate_carcinoma.98313	0	-	561836	566704	0	2	252,1040	0,3828
chr20	565661	566659	HepG2_Caltech_ENCODE.38043	0	.	565661	566659	0	1	998	0
chr20	568515	569463	prostate_carcinoma.98315	0	.	568515	569463	0	1	948	0
chr20	571152	571846	A549_Myers.86718	0	.	571152	571846	0	1	694	0
chr20	612991	613728	A549_Myers.86499	0	.	612991	613728	0	1	737	0
chr20	656613	657294	A549_Myers.86505	0	.	656613	657294	0	1	681	0
chr20	669930	670704	REMC_LuminalBreast.97413	0	.	669930	670704	0	1	774	0
chr20	672005	673761	REMC_LuminalBreast.97414	0	.	672005	673761	0	1	1756	0
chr20	673892	675313	REMC_LuminalBreast.97415	0	.	673892	675313	0	1	1421	0
chr20	675531	676729	REMC_LuminalBreast.97416	0	.	675531	676729	0	1	1198	0
chr20	677825	683369	REMC_LuminalBreast.97417	0	.	677825	683369	0	1	5544	0
chr20	680805	681426	prostate_normal.58785	0	.	680805	681426	0	1	621	0
chr20	681796	682805	H1_polyA+.114485	0	.	681796	682805	0	1	1009	0
chr20	681880	683275	ZR751_Thompson.23989	0	.	681880	683275	0	1	1395	0
chr20	682205	683299	BT474_Burge_Thompson.34421	0	.	682205	683299	0	1	1094	0
chr20	684784	687039	prostate_normal.58789	0	+	684784	687039	0	2	528,64	0,2191
chr20	684825	685202	testes_Burge.52758	0	.	684825	685202	0	1	377	0
chr20	685774	686875	prostate_normal.58790	0	.	685774	686875	0	1	1101	0
chr20	685832	686777	H1_polyA+.114487	0	.	685832	686777	0	1	945	0
chr20	686068	686593	MDAMB468_Thompson.24438	0	.	686068	686593	0	1	525	0
chr20	686103	687040	ZR751_Thompson.23992	0	.	686103	687040	0	1	937	0
chr20	751386	751926	B_Cells_Pritchard.3159305	0	.	751386	751926	0	1	540	0
chr20	775981	776922	MDAMB468_Thompson.24446	0	.	775981	776922	0	1	941	0
chr20	776309	776905	MCF7_Burge_Thompson.31605	0	.	776309	776905	0	1	596	0
chr20	776840	777661	MDAMB231_Thompson.22041	0	.	776840	777661	0	1	821	0
chr20	778094	781083	REMC_LuminalBreast.97428	0	.	778094	781083	0	1	2989	0
chr20	779039	781200	H1_polyA+.114496	0	.	779039	781200	0	1	2161	0
chr20	779084	781345	MDAMB468_Thompson.24447	0	.	779084	781345	0	1	2261	0
chr20	779475	780598	ZR751_Thompson.23997	0	.	779475	780598	0	1	1123	0
chr20	779606	781349	B_Cells_Pritchard.3159379	0	.	779606	781349	0	1	1743	0
chr20	779650	781229	B_cells_Cheung.193412	0	.	779650	781229	0	1	1579	0
chr20	779808	781276	T47D_Burge_Thompson.29007	0	.	779808	781276	0	1	1468	0
chr20	779828	780809	BT474_Burge_Thompson.34426	0	.	779828	780809	0	1	981	0
chr20	779924	781257	CD4_Plagnol_activated.64809	0	.	779924	781257	0	1	1333	0
chr20	779942	780451	K562.45245	0	.	779942	780451	0	1	509	0
chr20	780278	781241	MCF7_Burge_Thompson.31608	0	.	780278	781241	0	1	963	0
chr20	781440	782927	K562.45246	0	.	781440	782927	0	1	1487	0
chr20	781485	783788	B_cells_Cheung.193413	0	.	781485	783788	0	1	2303	0
chr20	781535	786082	B_Cells_Pritchard.3159381	0	+	781535	786082	0	2	2189,195	0,4352
chr20	781538	782987	prostate_normal.58800	0	.	781538	782987	0	1	1449	0
chr20	781543	783933	MDAMB468_Thompson.24448	0	.	781543	783933	0	1	2390	0
chr20	781556	785828	T47D_Burge_Thompson.29008	0	.	781556	785828	0	1	4272	0
chr20	781649	782783	BT20_Thompson.22056	0	.	781649	782783	0	1	1134	0
chr20	781751	782505	CD4_Plagnol_resting.62935	0	.	781751	782505	0	1	754	0
chr20	781897	783787	MCF7_Burge_Thompson.31609	0	.	781897	783787	0	1	1890	0
chr20	782035	782603	BT474_Burge_Thompson.34427	0	.	782035	782603	0	1	568	0
chr20	783978	786123	H1_polyA+.114497	0	.	783978	786123	0	1	2145	0
chr20	784043	786108	prostate_carcinoma.98343	0	.	784043	786108	0	1	2065	0
chr20	784054	785790	CD4_Plagnol_activated.64811	0	.	784054	785790	0	1	1736	0
chr20	784075	786128	K562.45248	0	.	784075	786128	0	1	2053	0
chr20	784163	786123	CD4_Plagnol_resting.62937	0	.	784163	786123	0	1	1960	0
chr20	784677	786091	B_cells_Cheung.193415	0	.	784677	786091	0	1	1414	0
chr20	784749	786083	prostate_normal.58802	0	.	784749	786083	0	1	1334	0
chr20	784961	785920	melanoma_Garraway_short_term_cultures.68640	0	.	784961	785920	0	1	959	0
chr20	862525	863926	H1_polyA+.114504	0	.	862525	863926	0	1	1401	0
chr20	866419	867487	H1_polyA+.114505	0	.	866419	867487	0	1	1068	0
chr20	868399	869839	H1_polyA+.114506	0	.	868399	869839	0	1	1440	0
chr20	868399	869839	H1_polyA+.114507	0	-	868399	869839	0	2	770,590	0,850
chr20	884734	885786	H1_polyA+.114511	0	.	884734	885786	0	1	1052	0
chr20	884966	885525	A549_Myers.86531	0	.	884966	885525	0	1	559	0
chr20	932594	934131	H1_polyA+.114520	0	.	932594	934131	0	1	1537	0
chr20	935486	936035	B_Cells_Pritchard.3159871	0	.	935486	936035	0	1	549	0
chr20	941714	943491	H1_polyA+.114522	0	.	941714	943491	0	1	1777	0
chr20	945126	945535	H1_polyA+.114524	0	.	945126	945535	0	1	409	0
chr20	945242	945628	prostate_carcinoma.98358	0	.	945242	945628	0	1	386	0
chr20	945746	946527	H1_polyA+.114525	0	.	945746	946527	0	1	781	0
chr20	946230	948351	prostate_carcinoma.98360	0	.	946230	948351	0	1	2121	0
chr20	947072	948404	H1_polyA+.114526	0	.	947072	948404	0	1	1332	0
chr20	957057	958154	B_Cells_Pritchard.3159971	0	.	957057	958154	0	1	1097	0
chr20	957289	958186	prostate_carcinoma.98363	0	.	957289	958186	0	1	897	0
chr20	958256	959217	B_Cells_Pritchard.3159973	0	.	958256	959217	0	1	961	0
chr20	964314	968535	prostate_carcinoma.98366	0	.	964314	968535	0	1	4221	0
chr20	964615	964939	B_Cells_Pritchard.3159999	0	.	964615	964939	0	1	324	0
chr20	968771	978452	prostate_carcinoma.98367	0	.	968771	978452	0	1	9681	0
chr20	970834	975621	B_Cells_Pritchard.3160029	0	.	970834	975621	0	1	4787	0
chr20	970865	976552	B_cells_Cheung.193490	0	.	970865	976552	0	5	1008,776,556,1850,860	0,1058,2302,2923,4827
chr20	971951	977962	MIP101.68797	0	.	971951	977962	0	1	6011	0
chr20	972805	973443	BT474_Burge_Thompson.34436	0	.	972805	973443	0	1	638	0
chr20	972941	973736	prostate_normal.58810	0	.	972941	973736	0	1	795	0
chr20	976676	978522	B_cells_Cheung.193491	0	.	976676	978522	0	1	1846	0
chr20	978670	979787	B_cells_Cheung.193492	0	.	978670	979787	0	1	1117	0
chr20	978726	980602	prostate_carcinoma.98368	0	.	978726	980602	0	1	1876	0
chr20	978804	980536	MIP101.68798	0	.	978804	980536	0	1	1732	0
chr20	978821	979322	K562.45251	0	.	978821	979322	0	1	501	0
chr20	978900	981125	B_Cells_Pritchard.3160039	0	.	978900	981125	0	1	2225	0
chr20	980073	981091	B_cells_Cheung.193493	0	.	980073	981091	0	2	517,438	0,580
chr20	989036	989869	B_cells_Cheung.193495	0	.	989036	989869	0	1	833	0
chr20	989147	990620	B_Cells_Pritchard.3160045	0	.	989147	990620	0	1	1473	0
chr20	991076	992753	B_Cells_Pritchard.3160049	0	.	991076	992753	0	1	1677	0
chr20	994573	996996	B_cells_Cheung.193496	0	.	994573	996996	0	1	2423	0
chr20	995408	996355	B_Cells_Pritchard.3160061	0	.	995408	996355	0	1	947	0
chr20	1002342	1003698	H1_polyA+.114530	0	.	1002342	1003698	0	1	1356	0
chr20	1006055	1007327	MIP101.68800	0	.	1006055	1007327	0	1	1272	0
chr20	1006610	1007180	B_cells_Cheung.193500	0	.	1006610	1007180	0	1	570	0
chr20	1007761	1010070	MIP101.68801	0	.	1007761	1010070	0	1	2309	0
chr20	1008965	1009767	B_Cells_Pritchard.3160115	0	.	1008965	1009767	0	1	802	0
chr20	1009232	1010051	B_cells_Cheung.193502	0	.	1009232	1010051	0	1	819	0
chr20	1016141	1016672	B_cells_Cheung.193504	0	.	1016141	1016672	0	1	531	0
chr20	1017031	1018110	H1_polyA+.114531	0	.	1017031	1018110	0	1	1079	0
chr20	1017819	1021793	B_cells_Cheung.193505	0	.	1017819	1021793	0	1	3974	0
chr20	1019152	1019954	B_Cells_Pritchard.3160167	0	-	1019152	1019954	0	2	234,506	0,296
chr20	1025501	1029508	B_cells_Cheung.193508	0	.	1025501	1029508	0	1	4007	0
chr20	1036472	1039705	B_cells_Cheung.193510	0	.	1036472	1039705	0	1	3233	0
chr20	1036480	1037731	B_Cells_Pritchard.3160237	0	.	1036480	1037731	0	1	1251	0
chr20	1036780	1038292	MIP101.68808	0	.	1036780	1038292	0	1	1512	0
chr20	1036927	1037399	A549_Myers.86545	0	.	1036927	1037399	0	1	472	0
chr20	1037900	1039122	B_Cells_Pritchard.3160239	0	.	1037900	1039122	0	1	1222	0
chr20	1040078	1040526	B_cells_Cheung.193511	0	.	1040078	1040526	0	1	448	0
chr20	1123187	1125781	MIP101.68827	0	.	1123187	1125781	0	1	2594	0
chr20	1259096	1259993	MeWo_Garraway.36326	0	.	1259096	1259993	0	1	897	0
chr20	1259120	1260310	K562.45296	0	.	1259120	1260310	0	1	1190	0
chr20	1259239	1260289	CD4_Plagnol_activated.64905	0	.	1259239	1260289	0	1	1050	0
chr20	1259664	1260005	H1_rRNA-depleted_UCSD_REMC.86351	0	.	1259664	1260005	0	1	341	0
chr20	1259671	1260042	prostate_normal.58834	0	.	1259671	1260042	0	1	371	0
chr20	1259735	1260103	A549_Myers.86602	0	.	1259735	1260103	0	1	368	0
chr20	1260964	1265167	REMC_MyoepithelialBreast.91057	0	.	1260964	1265167	0	1	4203	0
chr20	1261086	1263843	prostate_carcinoma.98403	0	.	1261086	1263843	0	1	2757	0
chr20	1261108	1262261	melanoma_Garraway_short_term_cultures.68671	0	.	1261108	1262261	0	1	1153	0
chr20	1261127	1264589	MIP101.68847	0	-	1261127	1264589	0	2	2067,187	0,3275
chr20	1261127	1263841	MIP101.68846	0	.	1261127	1263841	0	1	2714	0
chr20	1261419	1262522	CD4_Plagnol_activated.64907	0	.	1261419	1262522	0	1	1103	0
chr20	1261523	1262518	HeLa_polyA+_Chen.35416	0	.	1261523	1262518	0	1	995	0
chr20	1261541	1262288	CD4_Plagnol_resting.62985	0	.	1261541	1262288	0	1	747	0
chr20	1261696	1262267	K562.45298	0	.	1261696	1262267	0	1	571	0
chr20	1261742	1263105	BT20_Thompson.22072	0	.	1261742	1263105	0	1	1363	0
chr20	1261757	1262154	A549_Myers.86604	0	.	1261757	1262154	0	1	397	0
chr20	1262386	1263562	melanoma_Garraway_short_term_cultures.68672	0	.	1262386	1263562	0	1	1176	0
chr20	1262774	1263411	K562.45299	0	.	1262774	1263411	0	1	637	0
chr20	1264185	1276877	B_Cells_Pritchard.3163983	0	+	1264185	1276877	0	3	4021,2277,3315	0,5166,9377
chr20	1264185	1276877	B_Cells_Pritchard.3163985	0	-	1264185	1276877	0	2	5134,3255	0,9437
chr20	1264198	1265576	HIT000003284	0	-	1264198	1265576	0	1	1378	0
chr20	1264509	1265247	CD4_Plagnol_activated.64908	0	.	1264509	1265247	0	1	738	0
chr20	1264659	1266550	HepG2_Caltech_ENCODE.38058	0	.	1264659	1266550	0	1	1891	0
chr20	1264672	1266262	MIP101.68848	0	.	1264672	1266262	0	1	1590	0
chr20	1264721	1267389	melanoma_Garraway_short_term_cultures.68673	0	.	1264721	1267389	0	1	2668	0
chr20	1264808	1265264	H1_rRNA-depleted_UCSD_REMC.86355	0	.	1264808	1265264	0	1	456	0
chr20	1265275	1267135	REMC_MyoepithelialBreast.91058	0	.	1265275	1267135	0	1	1860	0
chr20	1266262	1268076	MIP101.68849	0	.	1266262	1268076	0	1	1814	0
chr20	1266512	1266894	H9_polyA+.45250	0	.	1266512	1266894	0	1	382	0
chr20	1266877	1267246	HeLa_polyA+_Chen.35419	0	.	1266877	1267246	0	1	369	0
chr20	1269358	1271635	MIP101.68851	0	.	1269358	1271635	0	1	2277	0
chr20	1269771	1271651	REMC_BreastStem.48996	0	.	1269771	1271651	0	1	1880	0
chr20	1269955	1271535	prostate_carcinoma.98406	0	.	1269955	1271535	0	1	1580	0
chr20	1271742	1273150	H1_polyA+.114575	0	.	1271742	1273150	0	1	1408	0
chr20	1271859	1280807	REMC_BreastStem.48997	0	.	1271859	1280807	0	1	8948	0
chr20	1273342	1287950	B_cells_Cheung.193751	0	.	1273342	1287950	0	1	14608	0
chr20	1274625	1275627	MIP101.68853	0	.	1274625	1275627	0	1	1002	0
chr20	1275046	1275973	HepG2_Caltech_ENCODE.38062	0	.	1275046	1275973	0	1	927	0
chr20	1275084	1276417	H1_polyA+.114577	0	.	1275084	1276417	0	1	1333	0
chr20	1276988	1278008	H1_polyA+.114578	0	.	1276988	1278008	0	1	1020	0
chr20	1279248	1279891	B_Cells_Pritchard.3163999	0	-	1279248	1279891	0	1	643	0
chr20	1279418	1280405	CD4_Plagnol_resting.62990	0	.	1279418	1280405	0	1	987	0
chr20	1279421	1280418	CD4_Plagnol_activated.64912	0	.	1279421	1280418	0	1	997	0
chr20	1279438	1280823	melanoma_Garraway_short_term_cultures.68676	0	.	1279438	1280823	0	1	1385	0
chr20	1279534	1279883	MIP101.68855	0	.	1279534	1279883	0	1	349	0
chr20	1280942	1287987	REMC_BreastStem.48998	0	.	1280942	1287987	0	1	7045	0
chr20	1280951	1287959	REMC_MyoepithelialBreast.91059	0	.	1280951	1287959	0	1	7008	0
chr20	1286217	1287952	H1_polyA+.114579	0	.	1286217	1287952	0	1	1735	0
chr20	1286284	1287920	melanoma_Garraway_short_term_cultures.68678	0	.	1286284	1287920	0	1	1636	0
chr20	1286318	1287940	CD4_Plagnol_resting.62997	0	.	1286318	1287940	0	1	1622	0
chr20	1286327	1287925	CD4_Plagnol_activated.64916	0	.	1286327	1287925	0	1	1598	0
chr20	1286573	1287417	HeLa_polyA+_Chen.35422	0	.	1286573	1287417	0	1	844	0
chr20	1290881	1295170	REMC_BreastStem.49001	0	.	1290881	1295170	0	1	4289	0
chr20	1293205	1295209	melanoma_Garraway_short_term_cultures.68680	0	.	1293205	1295209	0	1	2004	0
chr20	1293701	1294576	CD4_Plagnol_resting.63000	0	.	1293701	1294576	0	1	875	0
chr20	1326626	1327822	REMC_LuminalBreast.97481	0	.	1326626	1327822	0	1	1196	0
chr20	1330045	1330582	REMC_LuminalBreast.97483	0	.	1330045	1330582	0	1	537	0
chr20	1333759	1337140	REMC_LuminalBreast.97766	0	.	1333759	1337140	0	1	3381	0
chr20	1335044	1337127	REMC_MyoepithelialBreast.90852	0	.	1335044	1337127	0	1	2083	0
chr20	1343984	1350387	REMC_BreastStem.49011	0	-	1343984	1350387	0	2	2215,2831	0,3572
chr20	1347884	1348931	HepG2_Caltech_ENCODE.38070	0	.	1347884	1348931	0	1	1047	0
chr20	1350456	1354392	REMC_BreastStem.49013	0	.	1350456	1354392	0	1	3936	0
chr20	1350493	1350797	B_Cells_Pritchard.3160791	0	.	1350493	1350797	0	1	304	0
chr20	1353801	1354210	HepG2_Caltech_ENCODE.38075	0	.	1353801	1354210	0	1	409	0
chr20	1353865	1354251	B_cells_Cheung.193520	0	.	1353865	1354251	0	1	386	0
chr20	1354534	1357063	REMC_BreastStem.49014	0	.	1354534	1357063	0	1	2529	0
chr20	1354976	1355486	brain_AmbionMAQC.44530	0	.	1354976	1355486	0	1	510	0
chr20	1357372	1361907	REMC_BreastStem.49015	0	.	1357372	1361907	0	1	4535	0
chr20	1357874	1361434	H1_polyA+.114581	0	.	1357874	1361434	0	1	3560	0
chr20	1359620	1361689	B_Cells_Pritchard.3160829	0	.	1359620	1361689	0	1	2069	0
chr20	1359849	1361782	B_cells_Cheung.193523	0	.	1359849	1361782	0	1	1933	0
chr20	1360204	1361903	MIP101.68864	0	.	1360204	1361903	0	1	1699	0
chr20	1360364	1361730	CD4_Plagnol_activated.64937	0	.	1360364	1361730	0	1	1366	0
chr20	1362474	1363369	HepG2_Caltech_ENCODE.38079	0	.	1362474	1363369	0	1	895	0
chr20	1362897	1363557	H1_polyA+.114582	0	.	1362897	1363557	0	1	660	0
chr20	1363169	1363530	B_cells_Cheung.193525	0	.	1363169	1363530	0	1	361	0
chr20	1363608	1365040	CD4_Plagnol_resting.63024	0	.	1363608	1365040	0	1	1432	0
chr20	1363610	1364789	CD4_Plagnol_activated.64939	0	.	1363610	1364789	0	1	1179	0
chr20	1363636	1365214	H1_polyA+.114583	0	.	1363636	1365214	0	1	1578	0
chr20	1366073	1367580	HepG2_Caltech_ENCODE.38081	0	.	1366073	1367580	0	1	1507	0
chr20	1366861	1368774	B_Cells_Pritchard.3160851	0	.	1366861	1368774	0	1	1913	0
chr20	1366916	1369540	brain_AmbionMAQC.44539	0	.	1366916	1369540	0	1	2624	0
chr20	1366944	1369021	H1_polyA+.114592	0	.	1366944	1369021	0	1	2077	0
chr20	1760411	1760983	brain_AmbionMAQC.44544	0	.	1760411	1760983	0	1	572	0
chr20	1761117	1761453	brain_AmbionMAQC.44545	0	.	1761117	1761453	0	1	336	0
chr20	1761270	1761726	A549_Myers.86653	0	.	1761270	1761726	0	1	456	0
chr20	1763984	1764532	MCF10A_Thompson.21381	0	.	1763984	1764532	0	1	548	0
chr20	1764192	1764813	B_cells_Cheung.193602	0	.	1764192	1764813	0	1	621	0
chr20	1764878	1765791	brain_AmbionMAQC.44553	0	.	1764878	1765791	0	1	913	0
chr20	1765312	1765947	B_cells_Cheung.193604	0	.	1765312	1765947	0	1	635	0
chr20	1767479	1767880	A549_Myers.86654	0	.	1767479	1767880	0	1	401	0
chr20	1767486	1768313	REMC_LuminalBreast.97517	0	.	1767486	1768313	0	1	827	0
chr20	1772348	1773308	REMC_LuminalBreast.97519	0	.	1772348	1773308	0	1	960	0
chr20	1772980	1774448	REMC_MyoepithelialBreast.90807	0	.	1772980	1774448	0	1	1468	0
chr20	1776350	1777965	REMC_MyoepithelialBreast.90808	0	.	1776350	1777965	0	1	1615	0
chr20	1784565	1785541	REMC_MyoepithelialBreast.90810	0	.	1784565	1785541	0	1	976	0
chr20	1788062	1789486	REMC_LuminalBreast.97525	0	.	1788062	1789486	0	1	1424	0
chr20	1794482	1795001	REMC_BreastStem.49050	0	.	1794482	1795001	0	1	519	0
chr20	1795010	1795625	prostate_normal.58863	0	.	1795010	1795625	0	1	615	0
chr20	1795295	1796820	prostate_carcinoma.98448	0	.	1795295	1796820	0	1	1525	0
chr20	1796244	1796672	B_Cells_Pritchard.3161887	0	.	1796244	1796672	0	1	428	0
chr20	1800075	1804341	REMC_LuminalBreast.97529	0	.	1800075	1804341	0	1	4266	0
chr20	1802993	1804391	brain_AmbionMAQC.44557	0	.	1802993	1804391	0	1	1398	0
chr20	1803978	1808522	prostate_carcinoma.98451	0	.	1803978	1808522	0	1	4544	0
chr20	1804224	1805335	REMC_MyoepithelialBreast.90817	0	.	1804224	1805335	0	1	1111	0
chr20	1804545	1805800	brain_AmbionMAQC.44558	0	.	1804545	1805800	0	1	1255	0
chr20	1805155	1805892	prostate_normal.58864	0	.	1805155	1805892	0	1	737	0
chr20	1805423	1805896	A549_Myers.86660	0	.	1805423	1805896	0	1	473	0
chr20	1805898	1806919	melanoma_Garraway_short_term_cultures.68705	0	.	1805898	1806919	0	1	1021	0
chr20	1805970	1811228	brain_AmbionMAQC.44559	0	.	1805970	1811228	0	1	5258	0
chr20	1808055	1810125	melanoma_Garraway_short_term_cultures.68706	0	.	1808055	1810125	0	1	2070	0
chr20	1808897	1809614	prostate_normal.58867	0	.	1808897	1809614	0	1	717	0
chr20	1809013	1810006	H1_polyA+.114605	0	.	1809013	1810006	0	1	993	0
chr20	1809076	1810194	B_Cells_Pritchard.3161955	0	.	1809076	1810194	0	1	1118	0
chr20	1809225	1811515	prostate_carcinoma.98452	0	.	1809225	1811515	0	1	2290	0
chr20	1809287	1811519	B_cells_Cheung.193606	0	.	1809287	1811519	0	1	2232	0
chr20	1810186	1814574	REMC_LuminalBreast.97516	0	+	1810186	1814574	0	2	775,2558	0,1830
chr20	1810673	1815112	melanoma_Garraway_short_term_cultures.68707	0	.	1810673	1815112	0	1	4439	0
chr20	1810987	1811427	A549_Myers.86664	0	.	1810987	1811427	0	1	440	0
chr20	1811801	1813529	brain_AmbionMAQC.44560	0	.	1811801	1813529	0	1	1728	0
chr20	1811862	1812453	prostate_normal.58866	0	.	1811862	1812453	0	1	591	0
chr20	1811948	1813654	prostate_carcinoma.98454	0	.	1811948	1813654	0	1	1706	0
chr20	1812528	1813613	prostate_normal.58870	0	.	1812528	1813613	0	1	1085	0
chr20	1812579	1813134	A549_Myers.86665	0	.	1812579	1813134	0	1	555	0
chr20	1812807	1813458	H1_polyA+.114607	0	.	1812807	1813458	0	1	651	0
chr20	1813597	1818662	H1_polyA+.114608	0	.	1813597	1818662	0	1	5065	0
chr20	1813729	1815864	brain_AmbionMAQC.44561	0	.	1813729	1815864	0	1	2135	0
chr20	1813843	1814923	B_cells_Cheung.193611	0	.	1813843	1814923	0	1	1080	0
chr20	1813850	1815020	prostate_carcinoma.98455	0	.	1813850	1815020	0	1	1170	0
chr20	1814224	1814923	prostate_normal.58871	0	.	1814224	1814923	0	1	699	0
chr20	1815126	1818527	prostate_carcinoma.98453	0	.	1815126	1818527	0	1	3401	0
chr20	1815469	1816365	B_cells_Cheung.193612	0	.	1815469	1816365	0	1	896	0
chr20	1815537	1818580	melanoma_Garraway_short_term_cultures.68708	0	.	1815537	1818580	0	1	3043	0
chr20	1815614	1817962	prostate_normal.58873	0	.	1815614	1817962	0	1	2348	0
chr20	1817010	1818019	MeWo_Garraway.36336	0	.	1817010	1818019	0	1	1009	0
chr20	1818716	1819506	prostate_normal.58874	0	.	1818716	1819506	0	1	790	0
chr20	1819395	1820738	B_Cells_Pritchard.3161973	0	.	1819395	1820738	0	1	1343	0
chr20	1819823	1821626	H1_polyA+.114610	0	.	1819823	1821626	0	1	1803	0
chr20	1875929	1880178	brain_AmbionMAQC.44565	0	+	1875929	1880178	0	2	368,54	0,4195
chr20	2028303	2029397	REMC_MyoepithelialBreast.90823	0	.	2028303	2029397	0	1	1094	0
chr20	2028662	2029260	prostate_carcinoma.98467	0	.	2028662	2029260	0	1	598	0
chr20	2129136	2130080	REMC_LuminalBreast.97556	0	.	2129136	2130080	0	1	944	0
chr20	2135190	2165428	Rinn_00028093	0	+	2135190	2165428	0	2	975,364	0,29874
chr20	2135323	2136223	prostate_normal.58893	0	.	2135323	2136223	0	1	900	0
chr20	2135404	2141798	H1_polyA+.114631	0	+	2135404	2141798	0	2	761,244	0,6150
chr20	2135404	2136235	H1_polyA+.114630	0	.	2135404	2136235	0	1	831	0
chr20	2135481	2136579	A549_Myers.86712	0	.	2135481	2136579	0	1	1098	0
chr20	2135550	2136269	MCF7_Burge_Thompson.31631	0	.	2135550	2136269	0	1	719	0
chr20	2135726	2141796	prostate_carcinoma.98480	0	+	2135726	2141796	0	2	439,242	0,5828
chr20	2135727	2136623	B_Cells_Pritchard.3162773	0	.	2135727	2136623	0	1	896	0
chr20	2135800	2141798	B_cells_Cheung.193702	0	+	2135800	2141798	0	2	834,244	0,5754
chr20	2135871	2141797	Rinn_00027895	0	+	2135871	2141797	0	2	294,244	0,5682
chr20	2135872	2141797	ENST00000411839	0	+	2135872	2141797	0	2	293,243	0,5682
chr20	2136061	2136530	testes_Burge.52811	0	.	2136061	2136530	0	1	469	0
chr20	2368965	2369968	REMC_MyoepithelialBreast.90850	0	.	2368965	2369968	0	1	1003	0
chr20	2372504	2375420	REMC_LuminalBreast.97570	0	.	2372504	2375420	0	1	2916	0
chr20	2453461	2454189	A549_Myers.86735	0	.	2453461	2454189	0	1	728	0
chr20	2615371	2617594	REMC_MyoepithelialBreast.90872	0	.	2615371	2617594	0	1	2223	0
chr20	2615918	2617169	REMC_LuminalBreast.97578	0	.	2615918	2617169	0	1	1251	0
chr20	2616089	2617566	prostate_normal.58913	0	.	2616089	2617566	0	1	1477	0
chr20	2616123	2617176	melanoma_Garraway_short_term_cultures.68759	0	.	2616123	2617176	0	1	1053	0
chr20	2616179	2616824	REMC_BreastStem.49094	0	.	2616179	2616824	0	1	645	0
chr20	2616981	2617426	A549_Myers.86750	0	.	2616981	2617426	0	1	445	0
chr20	2617796	2621276	prostate_normal.58915	0	-	2617796	2621276	0	2	2314,565	0,2915
chr20	2618062	2620170	REMC_LuminalBreast.97579	0	.	2618062	2620170	0	1	2108	0
chr20	2618556	2620109	melanoma_Garraway_short_term_cultures.68760	0	.	2618556	2620109	0	1	1553	0
chr20	2618583	2620111	MeI_Garraway.17539	0	.	2618583	2620111	0	1	1528	0
chr20	2619033	2620077	H1_polyA+.114695	0	.	2619033	2620077	0	1	1044	0
chr20	2749222	2749994	H1_polyA+.114703	0	.	2749222	2749994	0	1	772	0
chr20	2749919	2750316	B_Cells_Pritchard.3164457	0	.	2749919	2750316	0	1	397	0
chr20	2759597	2760982	B_Cells_Pritchard.3366229	0	+	2759597	2760982	0	2	40,1040	0,345
chr20	2968734	2969615	brain_AmbionMAQC.44608	0	.	2968734	2969615	0	1	881	0
chr20	2970136	2970689	CD4_Plagnol_activated.65057	0	.	2970136	2970689	0	1	553	0
chr20	2970190	2970720	BT474_Burge_Thompson.34523	0	.	2970190	2970720	0	1	530	0
chr20	2970277	2970628	brain_AmbionMAQC.44609	0	.	2970277	2970628	0	1	351	0
chr20	2977937	2978932	H1_polyA+.114715	0	.	2977937	2978932	0	1	995	0
chr20	2977937	2979969	REMC_BreastStem.49114	0	.	2977937	2979969	0	1	2032	0
chr20	2977948	2978854	B_cells_Cheung.193775	0	.	2977948	2978854	0	1	906	0
chr20	2978570	2980668	CD4_Plagnol_activated.65070	0	.	2978570	2980668	0	1	2098	0
chr20	2980078	2981226	REMC_BreastStem.49115	0	.	2980078	2981226	0	1	1148	0
chr20	2980207	2982040	REMC_LuminalBreast.97598	0	.	2980207	2982040	0	1	1833	0
chr20	2980220	2982179	REMC_MyoepithelialBreast.90908	0	.	2980220	2982179	0	1	1959	0
chr20	2980234	2980580	A549_Myers.86810	0	.	2980234	2980580	0	1	346	0
chr20	2986319	2987296	REMC_MyoepithelialBreast.90911	0	.	2986319	2987296	0	1	977	0
chr20	2990291	2991310	REMC_MyoepithelialBreast.90913	0	.	2990291	2991310	0	1	1019	0
chr20	2995733	2996292	REMC_MyoepithelialBreast.90916	0	.	2995733	2996292	0	1	559	0
chr20	2995736	2996119	B_Cells_Pritchard.3164967	0	.	2995736	2996119	0	1	383	0
chr20	2995745	2997031	CD4_Plagnol_resting.63149	0	.	2995745	2997031	0	1	1286	0
chr20	2995752	2997048	H1_polyA+.114994	0	.	2995752	2997048	0	1	1296	0
chr20	2995755	2996158	prostate_carcinoma.98554	0	.	2995755	2996158	0	1	403	0
chr20	2995772	2998249	CD4_Plagnol_activated.65077	0	.	2995772	2998249	0	1	2477	0
chr20	2996363	2998476	REMC_LuminalBreast.97607	0	.	2996363	2998476	0	1	2113	0
chr20	2996403	2998414	REMC_BreastStem.49124	0	.	2996403	2998414	0	1	2011	0
chr20	2996408	2999026	REMC_MyoepithelialBreast.90917	0	.	2996408	2999026	0	1	2618	0
chr20	2997181	2998534	H1_polyA+.114995	0	.	2997181	2998534	0	1	1353	0
chr20	2997238	2998336	prostate_carcinoma.98555	0	.	2997238	2998336	0	1	1098	0
chr20	2997277	2998541	CD4_Plagnol_resting.63150	0	.	2997277	2998541	0	1	1264	0
chr20	2997286	2998303	B_Cells_Pritchard.3164973	0	.	2997286	2998303	0	1	1017	0
chr20	2997326	2998189	prostate_normal.58957	0	.	2997326	2998189	0	1	863	0
chr20	3009718	3010038	A549_Myers.86815	0	.	3009718	3010038	0	1	320	0
chr20	3021158	3021730	CD4_Snyder.73813	0	.	3021158	3021730	0	1	572	0
chr20	3021833	3022167	CD4_Snyder.73814	0	.	3021833	3022167	0	1	334	0
chr20	3022572	3023631	CD4_Snyder.73816	0	.	3022572	3023631	0	1	1059	0
chr20	3023772	3024221	A549_Myers.86821	0	.	3023772	3024221	0	1	449	0
chr20	3024568	3025130	REMC_MyoepithelialBreast.90891	0	.	3024568	3025130	0	1	562	0
chr20	3024770	3025493	REMC_LuminalBreast.97609	0	.	3024770	3025493	0	1	723	0
chr20	3031899	3033372	REMC_MyoepithelialBreast.90894	0	.	3031899	3033372	0	1	1473	0
chr20	3102375	3102835	liver_polyA+.129882	0	.	3102375	3102835	0	1	460	0
chr20	3108970	3109720	MCF10A_Thompson.21410	0	.	3108970	3109720	0	1	750	0
chr20	3168980	3169905	REMC_MyoepithelialBreast.90919	0	.	3168980	3169905	0	1	925	0
chr20	3169030	3169491	A549_Myers.86856	0	.	3169030	3169491	0	1	461	0
chr20	3169615	3170054	A549_Myers.86857	0	.	3169615	3170054	0	1	439	0
chr20	3171717	3173860	REMC_LuminalBreast.97716	0	.	3171717	3173860	0	1	2143	0
chr20	3171800	3174032	H1_polyA+.115052	0	.	3171800	3174032	0	1	2232	0
chr20	3172017	3172728	B_cells_Cheung.193846	0	.	3172017	3172728	0	1	711	0
chr20	3172808	3174018	B_cells_Cheung.193847	0	.	3172808	3174018	0	1	1210	0
chr20	3172852	3174033	MIP101.68961	0	.	3172852	3174033	0	1	1181	0
chr20	3172860	3174063	melanoma_Garraway_short_term_cultures.68850	0	.	3172860	3174063	0	1	1203	0
chr20	3172956	3173726	BT474_Burge_Thompson.34564	0	.	3172956	3173726	0	1	770	0
chr20	3173066	3173938	prostate_normal.58981	0	.	3173066	3173938	0	1	872	0
chr20	3173139	3174024	T47D_Burge_Thompson.29071	0	.	3173139	3174024	0	1	885	0
chr20	3173468	3173858	HME_Burge.40551	0	.	3173468	3173858	0	1	390	0
chr20	3581116	3581622	B_cells_Cheung.194013	0	.	3581116	3581622	0	1	506	0
chr20	3594870	3595313	A549_Myers.86913	0	.	3594870	3595313	0	1	443	0
chr20	3638539	3639502	prostate_carcinoma.98632	0	.	3638539	3639502	0	1	963	0
chr20	3638748	3639663	liver_polyA+.130029	0	.	3638748	3639663	0	1	915	0
chr20	3638868	3639441	prostate_normal.59016	0	.	3638868	3639441	0	1	573	0
chr20	3640515	3640831	adipose_Raymond.67280	0	.	3640515	3640831	0	1	316	0
chr20	3657712	3658265	A549_Myers.86943	0	.	3657712	3658265	0	1	553	0
chr20	3738317	3739188	CD4_Plagnol_resting.68622	0	.	3738317	3739188	0	1	871	0
chr20	3739826	3741255	CD4_Plagnol_activated.65170	0	.	3739826	3741255	0	1	1429	0
chr20	3739858	3740495	CD4_Snyder.73861	0	.	3739858	3740495	0	1	637	0
chr20	3740415	3741196	A549_Myers.86967	0	.	3740415	3741196	0	1	781	0
chr20	3741537	3745794	REMC_LuminalBreast.97765	0	.	3741537	3745794	0	1	4257	0
chr20	3756510	3759063	B_cells_Cheung.194089	0	.	3756510	3759063	0	1	2553	0
chr20	3756624	3757861	H1_polyA+.115444	0	.	3756624	3757861	0	1	1237	0
chr20	3757899	3758730	BT474_Burge_Thompson.34934	0	.	3757899	3758730	0	1	831	0
chr20	3757993	3758646	HeLa_polyA+_Chen.35505	0	.	3757993	3758646	0	1	653	0
chr20	3764415	3766718	REMC_LuminalBreast.98591	0	.	3764415	3766718	0	1	2303	0
chr20	3765838	3766218	B_cells_Cheung.194096	0	.	3765838	3766218	0	1	380	0
chr20	3766312	3766635	B_cells_Cheung.194097	0	.	3766312	3766635	0	1	323	0
chr20	3766783	3769528	REMC_LuminalBreast.98592	0	.	3766783	3769528	0	1	2745	0
chr20	3767344	3768281	H1_polyA+.115452	0	.	3767344	3768281	0	1	937	0
chr20	3767406	3768361	REMC_MyoepithelialBreast.91211	0	.	3767406	3768361	0	1	955	0
chr20	3767566	3768275	CD4_Plagnol_activated.65196	0	.	3767566	3768275	0	1	709	0
chr20	3767878	3768699	B_cells_Cheung.194099	0	.	3767878	3768699	0	1	821	0
chr20	3806037	3807495	REMC_MyoepithelialBreast.91215	0	.	3806037	3807495	0	1	1458	0
chr20	3806232	3807197	REMC_BreastStem.49413	0	.	3806232	3807197	0	1	965	0
chr20	3806324	3806863	B_cells_Cheung.197253	0	.	3806324	3806863	0	1	539	0
chr20	3806346	3806855	melanoma_Garraway_short_term_cultures.68920	0	.	3806346	3806855	0	1	509	0
chr20	3807709	3810337	REMC_MyoepithelialBreast.91216	0	.	3807709	3810337	0	1	2628	0
chr20	3808917	3810493	REMC_LuminalBreast.98599	0	.	3808917	3810493	0	1	1576	0
chr20	3808922	3809660	melanoma_Garraway_short_term_cultures.68923	0	.	3808922	3809660	0	1	738	0
chr20	3810814	3811305	melanoma_Garraway_short_term_cultures.68925	0	.	3810814	3811305	0	1	491	0
chr20	4006059	4011685	REMC_LuminalBreast.97775	0	.	4006059	4011685	0	1	5626	0
chr20	4006372	4008320	REMC_BreastStem.49195	0	.	4006372	4008320	0	1	1948	0
chr20	4011813	4013204	REMC_BreastStem.49197	0	.	4011813	4013204	0	1	1391	0
chr20	4011823	4014532	REMC_LuminalBreast.97776	0	.	4011823	4014532	0	1	2709	0
chr20	4012512	4013300	melanoma_Garraway_short_term_cultures.68957	0	.	4012512	4013300	0	1	788	0
chr20	4013779	4014474	REMC_BreastStem.49198	0	.	4013779	4014474	0	1	695	0
chr20	4014791	4016485	REMC_LuminalBreast.97777	0	.	4014791	4016485	0	1	1694	0
chr20	4016685	4019844	REMC_LuminalBreast.97778	0	.	4016685	4019844	0	1	3159	0
chr20	4037110	4037645	A549_Myers.87006	0	.	4037110	4037645	0	1	535	0
chr20	4120678	4122057	prostate_carcinoma.98686	0	.	4120678	4122057	0	1	1379	0
chr20	4120788	4124550	REMC_BreastStem.49211	0	+	4120788	4124550	0	2	3237,378	0,3384
chr20	4121589	4128503	melanoma_Garraway_short_term_cultures.68964	0	+	4121589	4128503	0	3	2436,459,63	0,2583,6851
chr20	4121735	4124599	Rinn_00027831	0	+	4121735	4124599	0	3	158,98,428	0,2192,2436
chr20	4123441	4123870	MDAMB468_Thompson.24543	0	.	4123441	4123870	0	1	429	0
chr20	4124271	4139837	pHIT000035192	0	-	4124271	4139837	0	2	239,76	0,15490
chr20	4133322	4145285	HeLa_polyA+_Chen.35537	0	+	4133322	4145285	0	2	29,478	0,11485
chr20	4137796	4138606	REMC_MyoepithelialBreast.91039	0	.	4137796	4138606	0	1	810	0
chr20	4137872	4138763	REMC_BreastStem.49213	0	.	4137872	4138763	0	1	891	0
chr20	4144213	4147866	REMC_LuminalBreast.97783	0	.	4144213	4147866	0	1	3653	0
chr20	4144427	4147351	prostate_carcinoma.98692	0	.	4144427	4147351	0	1	2924	0
chr20	4144438	4145262	A549_Myers.87053	0	.	4144438	4145262	0	1	824	0
chr20	4144615	4145382	melanoma_Garraway_short_term_cultures.68968	0	.	4144615	4145382	0	1	767	0
chr20	4144801	4145349	HepG2_Caltech_ENCODE.38205	0	.	4144801	4145349	0	1	548	0
chr20	4146975	4147639	HepG2_Caltech_ENCODE.38207	0	.	4146975	4147639	0	1	664	0
chr20	4195762	4196250	BT474_Burge_Thompson.34609	0	.	4195762	4196250	0	1	488	0
chr20	4394100	4419559	pHIT000120808	0	+	4394100	4419559	0	4	53,45,77,212	0,3462,4048,25247
chr20	4423350	4423707	A549_Myers.87072	0	.	4423350	4423707	0	1	357	0
chr20	4492973	4500736	Rinn_00028604	0	-	4492973	4500736	0	2	253,215	0,7548
chr20	4492973	4500736	Rinn_00028299	0	-	4492973	4500736	0	2	253,206	0,7557
chr20	4520771	4522090	A549_Myers.87076	0	.	4520771	4522090	0	1	1319	0
chr20	4631391	4632320	REMC_MyoepithelialBreast.91062	0	.	4631391	4632320	0	1	929	0
chr20	4632477	4633993	REMC_MyoepithelialBreast.91063	0	.	4632477	4633993	0	1	1516	0
chr20	4689339	4690433	H1_polyA+.114899	0	.	4689339	4690433	0	1	1094	0
chr20	4689340	4689651	A549_Myers.87089	0	.	4689340	4689651	0	1	311	0
chr20	4689364	4690266	B_cells_Cheung.194147	0	.	4689364	4690266	0	1	902	0
chr20	4689386	4690522	B_Cells_Pritchard.3169021	0	+	4689386	4690522	0	1	1136	0
chr20	4689420	4689921	testes_Burge.53040	0	.	4689420	4689921	0	1	501	0
chr20	4689561	4690515	prostate_carcinoma.98710	0	.	4689561	4690515	0	1	954	0
chr20	4689701	4690023	A549_Myers.87090	0	.	4689701	4690023	0	1	322	0
chr20	4690687	4691369	B_cells_Cheung.194148	0	.	4690687	4691369	0	1	682	0
chr20	4757097	4759646	B_cells_Cheung.194185	0	.	4757097	4759646	0	1	2549	0
chr20	4757143	4759659	B_Cells_Pritchard.3169091	0	+	4757143	4759659	0	2	39,2385	0,131
chr20	4760428	4761297	B_cells_Cheung.194187	0	.	4760428	4761297	0	1	869	0
chr20	4763966	4765300	B_Cells_Pritchard.3169099	0	.	4763966	4765300	0	1	1334	0
chr20	4772134	4772917	B_cells_Cheung.194190	0	.	4772134	4772917	0	1	783	0
chr20	4959062	4959491	A549_Myers.87122	0	.	4959062	4959491	0	1	429	0
chr20	4959128	4959642	B_Cells_Pritchard.3169837	0	.	4959128	4959642	0	1	514	0
chr20	4981773	4982171	B_Cells_Pritchard.3169879	0	+	4981773	4982171	0	1	398	0
chr20	4981784	4982190	B_cells_Cheung.194205	0	.	4981784	4982190	0	1	406	0
chr20	4992208	4993334	REMC_LuminalBreast.97802	0	.	4992208	4993334	0	1	1126	0
chr20	4993067	4995039	MIP101.69035	0	.	4993067	4995039	0	1	1972	0
chr20	4993069	4995102	H1_polyA+.114949	0	.	4993069	4995102	0	1	2033	0
chr20	4993613	4994977	prostate_carcinoma.98730	0	.	4993613	4994977	0	1	1364	0
chr20	4993751	4994989	B_cells_Cheung.194218	0	.	4993751	4994989	0	1	1238	0
chr20	4993992	4994843	BT474_Burge_Thompson.34618	0	.	4993992	4994843	0	1	851	0
chr20	5121019	5126502	NEC_from_H9.74704	0	.	5121019	5126502	0	1	5483	0
chr20	5121738	5125232	CD4_Snyder.73969	0	.	5121738	5125232	0	1	3494	0
chr20	5122006	5126652	liver_polyA+.130220	0	.	5122006	5126652	0	1	4646	0
chr20	5122363	5126513	testes_Burge.53095	0	.	5122363	5126513	0	1	4150	0
chr20	5122439	5126466	liver_polyA+.130222	0	-	5122439	5126466	0	2	969,2252	0,1775
chr20	5122862	5124225	H9_polyA-_Chen.14346	0	.	5122862	5124225	0	1	1363	0
chr20	5122914	5126532	HIT000043704	0	-	5122914	5126532	0	1	3618	0
chr20	5122928	5124240	colon_Burge.37807	0	.	5122928	5124240	0	1	1312	0
chr20	5123181	5126056	heart_Burge.28556	0	.	5123181	5126056	0	1	2875	0
chr20	5123236	5126502	lymph_node_Burge.49958	0	.	5123236	5126502	0	1	3266	0
chr20	5123480	5125273	breast_Burge.40426	0	.	5123480	5125273	0	1	1793	0
chr20	5123546	5125852	adipose_Burge.38697	0	.	5123546	5125852	0	1	2306	0
chr20	5123579	5124730	HME_Burge.40640	0	.	5123579	5124730	0	1	1151	0
chr20	5123621	5124391	HeLa_polyA-_Chen.18529	0	.	5123621	5124391	0	1	770	0
chr20	5123866	5126532	HIT000006272	0	-	5123866	5126532	0	1	2666	0
chr20	5124054	5125226	skeletal_muscle_Burge.29196	0	.	5124054	5125226	0	1	1172	0
chr20	5124303	5125271	colon_Burge.37808	0	.	5124303	5125271	0	1	968	0
chr20	5124313	5125130	MB435_Burge.43385	0	.	5124313	5125130	0	1	817	0
chr20	5124941	5126577	kidney_Gilad.84235	0	.	5124941	5126577	0	1	1636	0
chr20	5125277	5126581	HIT000091051	0	+	5125277	5126581	0	1	1304	0
chr20	5125326	5126502	colon_Burge.37809	0	.	5125326	5126502	0	1	1176	0
chr20	5125359	5126646	HIT000097832	0	+	5125359	5126646	0	1	1287	0
chr20	5125399	5126503	CD4_Snyder.73968	0	.	5125399	5126503	0	1	1104	0
chr20	5125556	5126547	HIT000088676	0	+	5125556	5126547	0	1	991	0
chr20	5125915	5126502	adipose_Burge.38696	0	.	5125915	5126502	0	1	587	0
chr20	5125929	5126473	breast_Burge.40428	0	.	5125929	5126473	0	1	544	0
chr20	5126144	5126502	heart_Burge.28555	0	.	5126144	5126502	0	1	358	0
chr20	5126924	5128044	melanoma_Garraway_short_term_cultures.69025	0	.	5126924	5128044	0	1	1120	0
chr20	5130507	5132996	H1_polyA+.115117	0	+	5130507	5132996	0	2	453,1833	0,656
chr20	5130507	5133016	H1_polyA+.115116	0	.	5130507	5133016	0	1	2509	0
chr20	5130580	5133014	B_Cells_Pritchard.3170233	0	+	5130580	5133014	0	2	86,2196	0,238
chr20	5130761	5131602	REMC_MyoepithelialBreast.91119	0	.	5130761	5131602	0	1	841	0
chr20	5130799	5133043	B_cells_Cheung.194245	0	.	5130799	5133043	0	1	2244	0
chr20	5130810	5131979	HepG2_Caltech_ENCODE.38256	0	.	5130810	5131979	0	1	1169	0
chr20	5130826	5131397	CD4_Plagnol_activated.65221	0	.	5130826	5131397	0	1	571	0
chr20	5130830	5132562	brain_AmbionMAQC.44752	0	.	5130830	5132562	0	1	1732	0
chr20	5130835	5131600	CD4_Plagnol_resting.63274	0	.	5130835	5131600	0	1	765	0
chr20	5130981	5132002	BT474_Burge_Thompson.34627	0	.	5130981	5132002	0	1	1021	0
chr20	5131134	5131719	H1_rRNA-depleted_UCSD_REMC.86689	0	.	5131134	5131719	0	1	585	0
chr20	5131494	5133029	REMC_LuminalBreast.97815	0	.	5131494	5133029	0	1	1535	0
chr20	5131515	5132497	CD4_Plagnol_activated.65222	0	.	5131515	5132497	0	1	982	0
chr20	5133167	5138279	B_cells_Cheung.194246	0	.	5133167	5138279	0	1	5112	0
chr20	5133277	5137883	B_Cells_Pritchard.3170237	0	-	5133277	5137883	0	2	410,3832	0,774
chr20	5135164	5137714	REMC_LuminalBreast.97817	0	.	5135164	5137714	0	1	2550	0
chr20	5135542	5137805	REMC_MyoepithelialBreast.91123	0	.	5135542	5137805	0	1	2263	0
chr20	5136223	5138331	HepG2_Caltech_ENCODE.38260	0	.	5136223	5138331	0	1	2108	0
chr20	5142221	5144115	H1_polyA+.114954	0	.	5142221	5144115	0	1	1894	0
chr20	5142250	5144183	B_cells_Cheung.194250	0	.	5142250	5144183	0	1	1933	0
chr20	5142475	5143160	MIP101.69058	0	.	5142475	5143160	0	1	685	0
chr20	5142503	5143457	HepG2_Caltech_ENCODE.38263	0	.	5142503	5143457	0	1	954	0
chr20	5146055	5150277	H1_polyA+.114957	0	.	5146055	5150277	0	1	4222	0
chr20	5146326	5151051	HepG2_Caltech_ENCODE.38265	0	.	5146326	5151051	0	1	4725	0
chr20	5146621	5147912	B_cells_Cheung.194253	0	.	5146621	5147912	0	1	1291	0
chr20	5147008	5150384	MIP101.69060	0	.	5147008	5150384	0	1	3376	0
chr20	5147020	5149112	B_Cells_Pritchard.3170279	0	.	5147020	5149112	0	1	2092	0
chr20	5151350	5154678	HepG2_Caltech_ENCODE.38268	0	.	5151350	5154678	0	1	3328	0
chr20	5157730	5158739	HepG2_Caltech_ENCODE.38266	0	.	5157730	5158739	0	1	1009	0
chr20	5157742	5158517	H1_polyA+.114961	0	.	5157742	5158517	0	1	775	0
chr20	5168308	5171806	HIT000044567	0	-	5168308	5171806	0	1	3498	0
chr20	5245389	5246077	A549_Myers.87147	0	.	5245389	5246077	0	1	688	0
chr20	5399841	5405780	NR_029405	0	+	5399841	5405780	0	2	298,3501	0,2438
chr20	5399851	5405780	HIT000045821	0	+	5399851	5405780	0	2	288,3501	0,2428
chr20	5399852	5403895	HIT000041363	0	+	5399852	5403895	0	2	287,1616	0,2427
chr20	5399852	5403828	ENST00000430097	0	+	5399852	5403828	0	2	287,1549	0,2427
chr20	5403944	5404500	testes_Burge.53081	0	.	5403944	5404500	0	1	556	0
chr20	5419043	5429461	REMC_LuminalBreast.97822	0	.	5419043	5429461	0	1	10418	0
chr20	5419580	5429422	prostate_carcinoma.98771	0	.	5419580	5429422	0	1	9842	0
chr20	5420566	5422295	B_Cells_Pritchard.3170907	0	.	5420566	5422295	0	1	1729	0
chr20	5420678	5422519	REMC_MyoepithelialBreast.91132	0	.	5420678	5422519	0	1	1841	0
chr20	5421070	5422170	brain_AmbionMAQC.44770	0	.	5421070	5422170	0	1	1100	0
chr20	5421137	5421754	prostate_normal.59109	0	.	5421137	5421754	0	1	617	0
chr20	5421344	5421965	HepG2_Caltech_ENCODE.38273	0	.	5421344	5421965	0	1	621	0
chr20	5421743	5422928	B_cells_Cheung.194271	0	.	5421743	5422928	0	1	1185	0
chr20	5422448	5429442	HepG2_Caltech_ENCODE.38272	0	.	5422448	5429442	0	1	6994	0
chr20	5422485	5429437	B_Cells_Pritchard.3170909	0	.	5422485	5429437	0	1	6952	0
chr20	5423002	5429444	B_cells_Cheung.194272	0	.	5423002	5429444	0	1	6442	0
chr20	5424632	5429948	HIT000025764	0	-	5424632	5429948	0	1	5316	0
chr20	5426556	5427713	testes_Burge.53086	0	.	5426556	5427713	0	1	1157	0
chr20	5426593	5427541	REMC_BreastStem.49238	0	.	5426593	5427541	0	1	948	0
chr20	5427062	5428013	prostate_normal.59112	0	.	5427062	5428013	0	1	951	0
chr20	5427217	5428361	HIT000422767	0	-	5427217	5428361	0	1	1144	0
chr20	5427254	5428346	HIT000424283	0	-	5427254	5428346	0	1	1092	0
chr20	5427368	5429432	REMC_MyoepithelialBreast.91135	0	.	5427368	5429432	0	1	2064	0
chr20	5427595	5429455	REMC_BreastStem.49239	0	.	5427595	5429455	0	1	1860	0
chr20	5428380	5429444	MDAMB231_Thompson.22144	0	.	5428380	5429444	0	1	1064	0
chr20	5428404	5429405	prostate_normal.59113	0	.	5428404	5429405	0	1	1001	0
chr20	5428534	5429272	testes_Burge.53089	0	.	5428534	5429272	0	1	738	0
chr20	5428966	5429430	brain_AmbionMAQC.44776	0	.	5428966	5429430	0	1	464	0
chr20	5432889	5433203	prostate_normal.59107	0	.	5432889	5433203	0	1	314	0
chr20	5436178	5437154	REMC_LuminalBreast.97824	0	.	5436178	5437154	0	1	976	0
chr20	5436404	5437388	REMC_MyoepithelialBreast.91136	0	.	5436404	5437388	0	1	984	0
chr20	5436520	5438648	ENST00000450640	0	-	5436520	5438648	0	3	163,68,127	0,386,2001
chr20	5439206	5443346	REMC_LuminalBreast.97826	0	.	5439206	5443346	0	1	4140	0
chr20	5447857	5452231	REMC_LuminalBreast.97827	0	.	5447857	5452231	0	1	4374	0
chr20	5450949	5452201	REMC_MyoepithelialBreast.91140	0	.	5450949	5452201	0	1	1252	0
chr20	5451502	5452302	B_Cells_Pritchard.3170983	0	.	5451502	5452302	0	1	800	0
chr20	5454045	5457845	REMC_LuminalBreast.97829	0	.	5454045	5457845	0	1	3800	0
chr20	5454070	5455810	REMC_MyoepithelialBreast.91141	0	.	5454070	5455810	0	1	1740	0
chr20	5458978	5460516	B_cells_Cheung.194285	0	.	5458978	5460516	0	1	1538	0
chr20	5459245	5460987	REMC_MyoepithelialBreast.91144	0	.	5459245	5460987	0	1	1742	0
chr20	5459294	5460547	REMC_LuminalBreast.97831	0	.	5459294	5460547	0	1	1253	0
chr20	5459641	5460547	CD4_Plagnol_activated.65228	0	.	5459641	5460547	0	1	906	0
chr20	5464540	5471435	REMC_MyoepithelialBreast.91147	0	.	5464540	5471435	0	1	6895	0
chr20	5466111	5467228	REMC_BreastStem.49242	0	.	5466111	5467228	0	1	1117	0
chr20	5467024	5470838	B_cells_Cheung.194290	0	.	5467024	5470838	0	1	3814	0
chr20	5467888	5469928	CD4_Plagnol_resting.63282	0	.	5467888	5469928	0	1	2040	0
chr20	5576535	5577037	B_cells_Cheung.194318	0	.	5576535	5577037	0	1	502	0
chr20	5585585	5586663	B_Cells_Pritchard.3171161	0	.	5585585	5586663	0	1	1078	0
chr20	5585595	5586514	A549_Myers.87176	0	.	5585595	5586514	0	1	919	0
chr20	5585760	5586352	B_cells_Cheung.194319	0	.	5585760	5586352	0	1	592	0
chr20	5990151	5991387	MIP101.69211	0	.	5990151	5991387	0	1	1236	0
chr20	5993007	5993883	H1_polyA+.115026	0	.	5993007	5993883	0	1	876	0
chr20	5993073	5993950	MIP101.69213	0	.	5993073	5993950	0	1	877	0
chr20	5993137	5993949	prostate_carcinoma.98852	0	.	5993137	5993949	0	1	812	0
chr20	5993182	5993901	prostate_normal.59171	0	.	5993182	5993901	0	1	719	0
chr20	5994353	5998006	HepG2_Caltech_ENCODE.38307	0	.	5994353	5998006	0	1	3653	0
chr20	5994594	5996543	HIT000038683	0	-	5994594	5996543	0	1	1949	0
chr20	5995055	5998055	HeLa_polyA+_Chen.35600	0	.	5995055	5998055	0	1	3000	0
chr20	5995267	5997913	prostate_normal.59173	0	+	5995267	5997913	0	2	953,804	0,1842
chr20	5995643	5996301	H9_polyA+.45441	0	.	5995643	5996301	0	1	658	0
chr20	5995995	5997943	REMC_LuminalBreast.97999	0	.	5995995	5997943	0	1	1948	0
chr20	5998123	6000212	HeLa_polyA+_Chen.35598	0	.	5998123	6000212	0	1	2089	0
chr20	5998145	6000235	MDAMB468_Thompson.24587	0	.	5998145	6000235	0	1	2090	0
chr20	5998214	5998675	brain_AmbionMAQC.44807	0	.	5998214	5998675	0	1	461	0
chr20	5998608	6000443	REMC_LuminalBreast.98000	0	.	5998608	6000443	0	1	1835	0
chr20	5999169	6000404	REMC_MyoepithelialBreast.91198	0	.	5999169	6000404	0	1	1235	0
chr20	6000539	6001425	HeLa_polyA+_Chen.35601	0	.	6000539	6001425	0	1	886	0
chr20	6000547	6001112	MDAMB468_Thompson.24590	0	.	6000547	6001112	0	1	565	0
chr20	6000565	6001113	prostate_carcinoma.98854	0	.	6000565	6001113	0	1	548	0
chr20	6575828	6634397	pHIT000094999	0	-	6575828	6634397	0	4	120,96,102,99	0,51015,56152,58470
chr20	6610257	6667119	pHIT000035229	0	-	6610257	6667119	0	6	79,91,102,71,165,91	0,18555,21723,24791,28943,56771
chr20	6631941	6667119	pHIT000120834	0	-	6631941	6667119	0	4	141,119,165,91	0,2357,7259,35087
chr20	6631980	6667119	pHIT000095000	0	-	6631980	6667119	0	4	102,71,165,91	0,3068,7220,35048
chr20	6716386	6720013	REMC_MyoepithelialBreast.91255	0	.	6716386	6720013	0	1	3627	0
chr20	6722397	6724402	REMC_MyoepithelialBreast.91247	0	.	6722397	6724402	0	1	2005	0
chr20	6742471	6743660	REMC_MyoepithelialBreast.91251	0	.	6742471	6743660	0	1	1189	0
chr20	6814102	6817407	B_cells_Cheung.194529	0	.	6814102	6817407	0	1	3305	0
chr20	6814120	6816516	B_Cells_Pritchard.3173821	0	.	6814120	6816516	0	1	2396	0
chr20	6819029	6819533	B_cells_Cheung.194532	0	.	6819029	6819533	0	1	504	0
chr20	6829716	6831473	B_cells_Cheung.194541	0	.	6829716	6831473	0	1	1757	0
chr20	6871007	6871831	B_cells_Cheung.194574	0	.	6871007	6871831	0	1	824	0
chr20	6872514	6873744	B_cells_Cheung.194576	0	.	6872514	6873744	0	1	1230	0
chr20	6879185	6881504	B_cells_Cheung.194582	0	.	6879185	6881504	0	1	2319	0
chr20	6889898	6891219	B_cells_Cheung.194588	0	.	6889898	6891219	0	1	1321	0
chr20	6956945	6957941	B_cells_Cheung.194633	0	.	6956945	6957941	0	1	996	0
chr20	6974922	6975336	B_cells_Cheung.194644	0	.	6974922	6975336	0	1	414	0
chr20	6986147	6988500	B_cells_Cheung.194651	0	.	6986147	6988500	0	1	2353	0
chr20	7014633	7015002	B_cells_Cheung.194684	0	.	7014633	7015002	0	1	369	0
chr20	7018394	7019595	B_cells_Cheung.194686	0	.	7018394	7019595	0	1	1201	0
chr20	7023005	7024639	B_cells_Cheung.194689	0	.	7023005	7024639	0	1	1634	0
chr20	7026581	7032026	B_cells_Cheung.194691	0	.	7026581	7032026	0	1	5445	0
chr20	7032111	7033404	B_cells_Cheung.194692	0	.	7032111	7033404	0	1	1293	0
chr20	7032174	7033135	B_Cells_Pritchard.3174593	0	.	7032174	7033135	0	1	961	0
chr20	7063997	7066046	B_cells_Cheung.194712	0	.	7063997	7066046	0	1	2049	0
chr20	7075112	7182849	Rinn_00027998	0	-	7075112	7182849	0	8	182,197,200,52,84,49,42,76	0,711,1534,36876,42018,95362,103342,107661
chr20	7873814	7880222	REMC_LuminalBreast.97899	0	.	7873814	7880222	0	1	6408	0
chr20	7881736	7882422	REMC_LuminalBreast.97900	0	.	7881736	7882422	0	1	686	0
chr20	7891494	7892556	REMC_LuminalBreast.97905	0	.	7891494	7892556	0	1	1062	0
chr20	7892132	7892531	brain_AmbionMAQC.44821	0	.	7892132	7892531	0	1	399	0
chr20	7896284	7905068	REMC_MyoepithelialBreast.91259	0	.	7896284	7905068	0	1	8784	0
chr20	7898045	7902347	melanoma_Garraway_short_term_cultures.69110	0	.	7898045	7902347	0	1	4302	0
chr20	7899261	7900474	REMC_BreastStem.49285	0	.	7899261	7900474	0	1	1213	0
chr20	7900536	7901550	REMC_BreastStem.49286	0	.	7900536	7901550	0	1	1014	0
chr20	7900979	7902261	CD4_Plagnol_activated.65304	0	.	7900979	7902261	0	1	1282	0
chr20	9415128	9420822	REMC_LuminalBreast.97926	0	.	9415128	9420822	0	1	5694	0
chr20	9420989	9424269	REMC_LuminalBreast.97927	0	.	9420989	9424269	0	1	3280	0
chr20	9427184	9430914	prostate_carcinoma.98942	0	.	9427184	9430914	0	1	3730	0
chr20	9427760	9428824	prostate_normal.59222	0	.	9427760	9428824	0	1	1064	0
chr20	9427786	9433082	REMC_LuminalBreast.97929	0	.	9427786	9433082	0	1	5296	0
chr20	9433911	9438381	B_Cells_Pritchard.3179415	0	-	9433911	9438381	0	2	859,3529	0,941
chr20	9437408	9437969	B_cells_Cheung.194773	0	.	9437408	9437969	0	1	561	0
chr20	9437515	9437894	A549_Myers.87272	0	.	9437515	9437894	0	1	379	0
chr20	9914734	9935764	Rinn_00027899	0	+	9914734	9935764	0	2	433,605	0,20425
chr20	9914735	9935764	ENST00000449270	0	+	9914735	9935764	0	2	432,604	0,20425
chr20	10100755	10101499	A549_Myers.87289	0	.	10100755	10101499	0	1	744	0
chr20	10101864	10102281	A549_Myers.87290	0	.	10101864	10102281	0	1	417	0
chr20	10101920	10102302	brain_AmbionMAQC.46387	0	.	10101920	10102302	0	1	382	0
chr20	10115400	10115722	A549_Myers.87294	0	.	10115400	10115722	0	1	322	0
chr20	10237350	10237692	A549_Myers.87317	0	.	10237350	10237692	0	1	342	0
chr20	10269947	10270663	HepG2_Caltech_ENCODE.38407	0	.	10269947	10270663	0	1	716	0
chr20	10270753	10271127	A549_Myers.87304	0	.	10270753	10271127	0	1	374	0
chr20	10603208	10603610	B_Cells_Pritchard.3181915	0	+	10603208	10603610	0	1	402	0
chr20	10631574	10632408	REMC_MyoepithelialBreast.91300	0	.	10631574	10632408	0	1	834	0
chr20	10656986	10690741	pHIT000094860	0	-	10656986	10690741	0	4	114,67,167,81	0,218,33030,33674
chr20	10659182	10690741	pHIT000035251	0	-	10659182	10690741	0	4	93,52,167,81	0,18309,30834,31478
chr20	10659182	10690183	pHIT000120860	0	-	10659182	10690183	0	3	93,52,167	0,18309,30834
chr20	10675527	10683591	prostate_carcinoma.99031	0	+	10675527	10683591	0	3	335,115,1359	0,6151,6705
chr20	10680810	10681310	MIP101.69228	0	.	10680810	10681310	0	1	500	0
chr20	10680899	10681440	prostate_carcinoma.99038	0	.	10680899	10681440	0	1	541	0
chr20	10681924	10693934	Rinn_00028002	0	-	10681924	10693934	0	3	388,226,118	0,8033,11892
chr20	10681925	10693934	ENST00000418690	0	-	10681925	10693934	0	3	387,225,117	0,8033,11892
chr20	10682165	10683591	prostate_carcinoma.99032	0	.	10682165	10683591	0	1	1426	0
chr20	10772296	10773126	prostate_carcinoma.99043	0	.	10772296	10773126	0	1	830	0
chr20	10839119	10839477	A549_Myers.87344	0	.	10839119	10839477	0	1	358	0
chr20	10912841	10913244	A549_Myers.87345	0	.	10912841	10913244	0	1	403	0
chr20	10920196	10920678	B_Cells_Pritchard.3182881	0	.	10920196	10920678	0	1	482	0
chr20	11239976	11241032	MCF10A_Thompson.21512	0	.	11239976	11241032	0	1	1056	0
chr20	11297581	11298080	A549_Myers.87351	0	.	11297581	11298080	0	1	499	0
chr20	11365163	11368703	H1_polyA+.115125	0	.	11365163	11368703	0	1	3540	0
chr20	11376032	11377028	H1_polyA+.115131	0	.	11376032	11377028	0	1	996	0
chr20	11381115	11429642	pHIT000120861	0	-	11381115	11429642	0	4	122,99,66,88	0,3009,45952,48439
chr20	11389942	11391414	H1_polyA+.115135	0	.	11389942	11391414	0	1	1472	0
chr20	11393881	11397412	H1_polyA+.115136	0	.	11393881	11397412	0	1	3531	0
chr20	11402473	11403874	H1_polyA+.115138	0	.	11402473	11403874	0	1	1401	0
chr20	11613790	11616000	XR_042059	0	-	11613790	11616000	0	1	2210	0
chr20	11613790	11616000	XR_042058	0	-	11613790	11616000	0	1	2210	0
chr20	11613791	11615971	HIT000043143	0	-	11613791	11615971	0	1	2180	0
chr20	11857845	11898621	pHIT000035258	0	+	11857845	11898621	0	7	56,156,131,54,43,88,171	0,3762,13961,17448,18653,29999,40605
chr20	11857845	11898639	pHIT000035255	0	+	11857845	11898639	0	7	56,156,131,54,43,88,189	0,3762,13961,17448,18653,29999,40605
chr20	11857845	11898639	pHIT000095055	0	+	11857845	11898639	0	6	56,131,54,43,88,189	0,13961,17448,18653,29999,40605
chr20	11858383	11874870	REMC_MyoepithelialBreast.91336	0	+	11858383	11874870	0	2	13554,2447	0,14040
chr20	11858740	11865095	REMC_LuminalBreast.97978	0	.	11858740	11865095	0	1	6355	0
chr20	11865234	11869076	REMC_LuminalBreast.97979	0	.	11865234	11869076	0	1	3842	0
chr20	11866610	11867480	melanoma_Garraway_short_term_cultures.69244	0	.	11866610	11867480	0	1	870	0
chr20	11869324	11872025	REMC_LuminalBreast.97981	0	.	11869324	11872025	0	1	2701	0
chr20	11869847	11870616	brain_AmbionMAQC.44906	0	.	11869847	11870616	0	1	769	0
chr20	11879763	11880450	REMC_MyoepithelialBreast.91339	0	.	11879763	11880450	0	1	687	0
chr20	11933854	11935109	REMC_MyoepithelialBreast.91343	0	.	11933854	11935109	0	1	1255	0
chr20	11982059	11983527	REMC_LuminalBreast.97985	0	.	11982059	11983527	0	1	1468	0
chr20	12273492	12273901	HeLa_polyA+_Chen.35632	0	.	12273492	12273901	0	1	409	0
chr20	12545139	12546619	H1_polyA+.115169	0	.	12545139	12546619	0	1	1480	0
chr20	12670879	12673469	H1_polyA+.115230	0	.	12670879	12673469	0	1	2590	0
chr20	12682866	12683693	H9_polyA+.45530	0	.	12682866	12683693	0	1	827	0
chr20	12683140	12683730	H1_polyA+.115402	0	.	12683140	12683730	0	1	590	0
chr20	12683274	12683742	H9_polyA-_Chen.14367	0	.	12683274	12683742	0	1	468	0
chr20	12683410	12683735	H1_rRNA-depleted_UCSD_REMC.86955	0	.	12683410	12683735	0	1	325	0
chr20	12863512	12864431	HIT000098435	0	-	12863512	12864431	0	1	919	0
chr20	12894595	12895928	prostate_normal.59260	0	+	12894595	12895928	0	2	225,235	0,1098
chr20	12894602	12900496	prostate_carcinoma.99065	0	+	12894602	12900496	0	3	218,165,1452	0,1091,4442
chr20	12899064	12900137	prostate_normal.59261	0	.	12899064	12900137	0	1	1073	0
chr20	13239843	13251908	REMC_MyoepithelialBreast.91453	0	.	13239843	13251908	0	1	12065	0
chr20	13245441	13254607	REMC_LuminalBreast.98073	0	.	13245441	13254607	0	1	9166	0
chr20	13246985	13247644	MIP101.69339	0	.	13246985	13247644	0	1	659	0
chr20	13254992	13256494	REMC_MyoepithelialBreast.91455	0	.	13254992	13256494	0	1	1502	0
chr20	13256498	13257162	REMC_LuminalBreast.98048	0	.	13256498	13257162	0	1	664	0
chr20	13264335	13271316	REMC_LuminalBreast.98052	0	.	13264335	13271316	0	1	6981	0
chr20	13267472	13271878	REMC_MyoepithelialBreast.91460	0	.	13267472	13271878	0	1	4406	0
chr20	13272250	13273459	REMC_MyoepithelialBreast.91461	0	.	13272250	13273459	0	1	1209	0
chr20	13273717	13274442	REMC_MyoepithelialBreast.91462	0	.	13273717	13274442	0	1	725	0
chr20	13274243	13275007	B_Cells_Pritchard.3188135	0	.	13274243	13275007	0	1	764	0
chr20	13282921	13286679	REMC_MyoepithelialBreast.91459	0	.	13282921	13286679	0	1	3758	0
chr20	13291486	13292290	H1_polyA+.115252	0	.	13291486	13292290	0	1	804	0
chr20	13291503	13293759	REMC_LuminalBreast.98284	0	.	13291503	13293759	0	1	2256	0
chr20	13291554	13296425	REMC_MyoepithelialBreast.91471	0	.	13291554	13296425	0	1	4871	0
chr20	13293873	13303131	REMC_LuminalBreast.98285	0	.	13293873	13303131	0	1	9258	0
chr20	13305144	13307937	REMC_MyoepithelialBreast.91474	0	.	13305144	13307937	0	1	2793	0
chr20	13305146	13307910	REMC_LuminalBreast.98287	0	.	13305146	13307910	0	1	2764	0
chr20	13308417	13313292	HIT000306529	0	-	13308417	13313292	0	1	4875	0
chr20	13308828	13309253	REMC_BreastStem.49372	0	.	13308828	13309253	0	1	425	0
chr20	13309884	13311238	H1_polyA+.115258	0	.	13309884	13311238	0	1	1354	0
chr20	13309927	13312276	HepG2_Caltech_ENCODE.38469	0	.	13309927	13312276	0	1	2349	0
chr20	13309944	13310970	melanoma_Garraway_short_term_cultures.69260	0	.	13309944	13310970	0	1	1026	0
chr20	13310177	13311742	B_cells_Cheung.194908	0	.	13310177	13311742	0	1	1565	0
chr20	13310259	13311038	REMC_BreastStem.49374	0	.	13310259	13311038	0	1	779	0
chr20	13311126	13314275	melanoma_Garraway_short_term_cultures.69261	0	.	13311126	13314275	0	1	3149	0
chr20	13311289	13315844	H1_polyA+.115259	0	.	13311289	13315844	0	1	4555	0
chr20	13311794	13313598	B_cells_Cheung.194909	0	.	13311794	13313598	0	1	1804	0
chr20	13640611	13641492	MCF7_Burge_Thompson.31815	0	.	13640611	13641492	0	1	881	0
chr20	13640633	13641136	MCF10A_Thompson.21520	0	.	13640633	13641136	0	1	503	0
chr20	13640643	13641120	ZR751_Thompson.24168	0	.	13640643	13641120	0	1	477	0
chr20	13640658	13641539	T47D_Burge_Thompson.29170	0	.	13640658	13641539	0	1	881	0
chr20	13640732	13641345	H9_polyA+.45543	0	.	13640732	13641345	0	1	613	0
chr20	13640732	13641751	CD4_Plagnol_resting.63399	0	.	13640732	13641751	0	1	1019	0
chr20	13640740	13641436	CD4_Plagnol_activated.65361	0	.	13640740	13641436	0	1	696	0
chr20	16097409	16119693	pHIT000120879	0	+	16097409	16119693	0	4	114,88,231,125	0,1786,14241,22159
chr20	16116914	16117268	A549_Myers.87460	0	.	16116914	16117268	0	1	354	0
chr20	16507134	16508778	H1_polyA+.115369	0	.	16507134	16508778	0	1	1644	0
chr20	16507190	16508654	MIP101.69428	0	.	16507190	16508654	0	1	1464	0
chr20	16507197	16507888	B_Cells_Pritchard.3196147	0	.	16507197	16507888	0	1	691	0
chr20	16507395	16508383	HepG2_Caltech_ENCODE.38508	0	.	16507395	16508383	0	1	988	0
chr20	16507430	16507971	A549_Myers.87488	0	.	16507430	16507971	0	1	541	0
chr20	16507437	16507956	prostate_carcinoma.99235	0	.	16507437	16507956	0	1	519	0
chr20	16530607	16593350	pHIT000120882	0	-	16530607	16593350	0	3	147,18,195	0,4441,62548
chr20	16536319	16568313	Rinn_00028113	0	+	16536319	16568313	0	4	44,1286,365,1418	0,4708,22799,30576
chr20	16541319	16559253	Rinn_00028504	0	+	16541319	16559253	0	2	994,135	0,17799
chr20	16706649	16741745	pHIT000035266	0	-	16706649	16741745	0	4	104,71,77,57	0,30617,32648,35039
chr20	17419700	17420550	A549_Myers.87512	0	.	17419700	17420550	0	1	850	0
chr20	17715926	17716336	A549_Myers.87538	0	.	17715926	17716336	0	1	410	0
chr20	17718382	17718964	A549_Myers.87539	0	.	17718382	17718964	0	1	582	0
chr20	17771599	17771975	A549_Myers.87542	0	.	17771599	17771975	0	1	376	0
chr20	17777875	17778180	A549_Myers.87543	0	.	17777875	17778180	0	1	305	0
chr20	17783045	17783355	A549_Myers.87544	0	.	17783045	17783355	0	1	310	0
chr20	17792520	17792893	A549_Myers.87546	0	.	17792520	17792893	0	1	373	0
chr20	17803694	17823994	pHIT000035278	0	+	17803694	17823994	0	2	125,190	0,20110
chr20	17806512	17807179	B_Cells_Pritchard.3198993	0	.	17806512	17807179	0	1	667	0
chr20	17806552	17808258	HepG2_Caltech_ENCODE.38525	0	.	17806552	17808258	0	1	1706	0
chr20	17808368	17809089	HepG2_Caltech_ENCODE.38528	0	.	17808368	17809089	0	1	721	0
chr20	17809333	17819957	HepG2_Caltech_ENCODE.38526	0	.	17809333	17819957	0	1	10624	0
chr20	17809333	17819957	HepG2_Caltech_ENCODE.38527	0	-	17809333	17819957	0	2	7196,1134	0,9490
chr20	17814358	17815077	B_Cells_Pritchard.3199031	0	.	17814358	17815077	0	1	719	0
chr20	17814778	17815815	B_cells_Cheung.195447	0	.	17814778	17815815	0	1	1037	0
chr20	17816006	17816804	ENST00000425405	0	-	17816006	17816804	0	2	442,190	0,608
chr20	17817727	17819239	B_cells_Cheung.195449	0	.	17817727	17819239	0	1	1512	0
chr20	17818768	17819373	B_Cells_Pritchard.3199045	0	.	17818768	17819373	0	1	605	0
chr20	17820120	17822069	HepG2_Caltech_ENCODE.38529	0	.	17820120	17822069	0	1	1949	0
chr20	17821340	17822093	REMC_LuminalBreast.98281	0	.	17821340	17822093	0	1	753	0
chr20	17822153	17823268	B_cells_Cheung.195455	0	.	17822153	17823268	0	1	1115	0
chr20	17823546	17824520	B_cells_Cheung.195456	0	.	17823546	17824520	0	1	974	0
chr20	17823551	17824466	BT474_Burge_Thompson.34747	0	.	17823551	17824466	0	1	915	0
chr20	17823696	17824216	prostate_carcinoma.99279	0	.	17823696	17824216	0	1	520	0
chr20	17839816	17841099	REMC_BreastStem.49403	0	.	17839816	17841099	0	1	1283	0
chr20	17839823	17840866	REMC_MyoepithelialBreast.91531	0	.	17839823	17840866	0	1	1043	0
chr20	18121002	18122570	H1_polyA+.115434	0	.	18121002	18122570	0	1	1568	0
chr20	18121433	18122097	prostate_carcinoma.99325	0	.	18121433	18122097	0	1	664	0
chr20	18121495	18121893	B_Cells_Pritchard.3199875	0	+	18121495	18121893	0	1	398	0
chr20	18121521	18121960	B_cells_Cheung.195558	0	.	18121521	18121960	0	1	439	0
chr20	18121537	18121954	prostate_normal.59408	0	.	18121537	18121954	0	1	417	0
chr20	18121541	18121888	brain_AmbionMAQC.45001	0	.	18121541	18121888	0	1	347	0
chr20	18121541	18121893	B_Cells_Pritchard.3199873	0	-	18121541	18121893	0	1	352	0
chr20	18258591	18259512	B_cells_Cheung.195584	0	.	18258591	18259512	0	1	921	0
chr20	18258847	18260022	B_Cells_Pritchard.3200239	0	.	18258847	18260022	0	1	1175	0
chr20	18258969	18260003	MIP101.69479	0	.	18258969	18260003	0	1	1034	0
chr20	18288659	18292998	pHIT000035285	0	-	18288659	18292998	0	2	368,94	0,4245
chr20	18306897	18310332	Rinn_00028116	0	+	18306897	18310332	0	3	200,251,911	0,443,2524
chr20	18307674	18310114	testes_Burge.53272	0	+	18307674	18310114	0	2	39,692	0,1748
chr20	18307691	18310125	Rinn_00027832	0	+	18307691	18310125	0	2	22,704	0,1730
chr20	18307692	18310128	ENST00000423033	0	+	18307692	18310128	0	2	21,706	0,1730
chr20	18307692	18310127	NR_034167	0	+	18307692	18310127	0	2	21,705	0,1730
chr20	18307743	18310127	Rinn_00028506	0	+	18307743	18310127	0	2	49,706	0,1678
chr20	18308085	18310233	HIT000021293	0	+	18308085	18310233	0	1	2148	0
chr20	18309396	18310140	HIT000042036	0	+	18309396	18310140	0	1	744	0
chr20	18498362	18500671	B_cells_Cheung.195644	0	.	18498362	18500671	0	1	2309	0
chr20	18498443	18499732	REMC_LuminalBreast.98435	0	.	18498443	18499732	0	1	1289	0
chr20	18498483	18500410	H1_polyA+.115505	0	.	18498483	18500410	0	1	1927	0
chr20	18498492	18500322	prostate_carcinoma.99371	0	.	18498492	18500322	0	1	1830	0
chr20	18498524	18499541	MeWo_Garraway.36745	0	.	18498524	18499541	0	1	1017	0
chr20	18499310	18499612	liver_polyA+.130840	0	.	18499310	18499612	0	1	302	0
chr20	18714708	18722624	HIT000019461	0	-	18714708	18722624	0	3	2834,136,316	0,3509,7600
chr20	18715380	18716412	H1_polyA+.115503	0	.	18715380	18716412	0	1	1032	0
chr20	18715602	18716029	brain_AmbionMAQC.45043	0	.	18715602	18716029	0	1	427	0
chr20	18722698	18724652	B_cells_Cheung.195655	0	.	18722698	18724652	0	1	1954	0
chr20	18722702	18724603	prostate_normal.59453	0	.	18722702	18724603	0	1	1901	0
chr20	18722710	18736820	CD4_Plagnol_resting.63526	0	+	18722710	18736820	0	2	974,83	0,14027
chr20	18722710	18724458	CD4_Plagnol_resting.63527	0	.	18722710	18724458	0	1	1748	0
chr20	18722711	18724511	K562.45638	0	.	18722711	18724511	0	1	1800	0
chr20	18722714	18724651	CD4_Snyder.74197	0	.	18722714	18724651	0	1	1937	0
chr20	18722729	18724651	B_Cells_Pritchard.3201329	0	.	18722729	18724651	0	1	1922	0
chr20	18722736	18724464	T47D_Burge_Thompson.29247	0	.	18722736	18724464	0	1	1728	0
chr20	18722742	18724604	MCF7_Burge_Thompson.31904	0	.	18722742	18724604	0	1	1862	0
chr20	18722744	18724652	prostate_carcinoma.99391	0	.	18722744	18724652	0	1	1908	0
chr20	18722943	18723530	HeLa_polyA+_Chen.35725	0	.	18722943	18723530	0	1	587	0
chr20	18723887	18724458	CD4_Plagnol_activated.65481	0	.	18723887	18724458	0	1	571	0
chr20	18913602	18914247	A549_Myers.87685	0	.	18913602	18914247	0	1	645	0
chr20	19685016	19686681	HIT000086349	0	-	19685016	19686681	0	1	1665	0
chr20	19685391	19687086	MCF7_Burge_Thompson.31909	0	.	19685391	19687086	0	1	1695	0
chr20	19685428	19688223	prostate_carcinoma.99418	0	.	19685428	19688223	0	1	2795	0
chr20	19685677	19686595	brain_AmbionMAQC.45046	0	.	19685677	19686595	0	1	918	0
chr20	19685699	19687771	T47D_Burge_Thompson.29255	0	.	19685699	19687771	0	1	2072	0
chr20	19686071	19687962	A549_Myers.87707	0	.	19686071	19687962	0	1	1891	0
chr20	19686265	19687639	MIP101.69525	0	.	19686265	19687639	0	1	1374	0
chr20	19686515	19686949	melanoma_Garraway_short_term_cultures.69440	0	.	19686515	19686949	0	1	434	0
chr20	19686647	19687608	prostate_normal.59470	0	.	19686647	19687608	0	1	961	0
chr20	19686746	19688553	HepG2_Caltech_ENCODE.38577	0	.	19686746	19688553	0	1	1807	0
chr20	19696588	19697503	prostate_carcinoma.99424	0	.	19696588	19697503	0	1	915	0
chr20	19696598	19697489	HepG2_Caltech_ENCODE.38580	0	.	19696598	19697489	0	1	891	0
chr20	19696666	19697389	prostate_normal.59473	0	.	19696666	19697389	0	1	723	0
chr20	19696840	19697178	liver_polyA+.130861	0	.	19696840	19697178	0	1	338	0
chr20	19697879	19704838	prostate_carcinoma.99425	0	.	19697879	19704838	0	1	6959	0
chr20	19699074	19699699	REMC_LuminalBreast.98531	0	.	19699074	19699699	0	1	625	0
chr20	19700267	19701602	HepG2_Caltech_ENCODE.38581	0	.	19700267	19701602	0	1	1335	0
chr20	19700433	19702364	REMC_MyoepithelialBreast.91582	0	.	19700433	19702364	0	1	1931	0
chr20	19702798	19703689	MCF7_Burge_Thompson.31911	0	.	19702798	19703689	0	1	891	0
chr20	19703037	19703619	prostate_normal.59475	0	.	19703037	19703619	0	1	582	0
chr20	19714679	19715748	melanoma_Garraway_short_term_cultures.69443	0	.	19714679	19715748	0	1	1069	0
chr20	19717984	19719773	melanoma_Garraway_short_term_cultures.69445	0	.	19717984	19719773	0	1	1789	0
chr20	19724362	19724821	prostate_carcinoma.99430	0	.	19724362	19724821	0	1	459	0
chr20	19938238	19938995	REMC_LuminalBreast.98579	0	.	19938238	19938995	0	1	757	0
chr20	20292076	20294144	brain_AmbionMAQC.45055	0	.	20292076	20294144	0	1	2068	0
chr20	20292161	20292701	T47D_Burge_Thompson.29273	0	.	20292161	20292701	0	1	540	0
chr20	20292334	20294301	HIT000044336	0	-	20292334	20294301	0	1	1967	0
chr20	20677597	20678174	B_Cells_Pritchard.3206031	0	.	20677597	20678174	0	1	577	0
chr20	21003699	21029724	pHIT000120933	0	+	21003699	21029724	0	7	101,74,130,199,196,216,233	0,2447,15380,18363,18745,23739,25792
chr20	21029158	21030404	H1_polyA+.115795	0	.	21029158	21030404	0	1	1246	0
chr20	21029830	21030677	A549_Myers.87831	0	.	21029830	21030677	0	1	847	0
chr20	21030960	21031756	H1_rRNA-depleted_UCSD_REMC.87309	0	.	21030960	21031756	0	1	796	0
chr20	21031475	21031926	A549_Myers.87832	0	.	21031475	21031926	0	1	451	0
chr20	21427832	21429034	B_cells_Cheung.195778	0	.	21427832	21429034	0	1	1202	0
chr20	21427911	21428947	NEC_from_H9.75200	0	.	21427911	21428947	0	1	1036	0
chr20	21427930	21429008	H9_polyA+.45724	0	.	21427930	21429008	0	1	1078	0
chr20	21427946	21428896	BT20_Thompson.22289	0	.	21427946	21428896	0	1	950	0
chr20	21428250	21428657	prostate_normal.59561	0	.	21428250	21428657	0	1	407	0
chr20	21430810	21431762	BT20_Thompson.22295	0	.	21430810	21431762	0	1	952	0
chr20	21431059	21432510	NEC_from_H9.75196	0	.	21431059	21432510	0	1	1451	0
chr20	21431114	21431735	B_cells_Cheung.195780	0	.	21431114	21431735	0	1	621	0
chr20	21432524	21435042	H9_polyA+.45726	0	.	21432524	21435042	0	1	2518	0
chr20	21432928	21433605	B_cells_Cheung.195783	0	.	21432928	21433605	0	1	677	0
chr20	21433013	21434462	K562.45665	0	.	21433013	21434462	0	1	1449	0
chr20	21433527	21435273	pHIT000035318	0	+	21433527	21435273	0	2	77,793	0,953
chr20	21433642	21435087	BT20_Thompson.22296	0	.	21433642	21435087	0	1	1445	0
chr20	21433709	21434824	B_cells_Cheung.195784	0	.	21433709	21434824	0	1	1115	0
chr20	21433938	21434653	T47D_Burge_Thompson.29298	0	.	21433938	21434653	0	1	715	0
chr20	21434153	21435238	A549_Myers.87865	0	.	21434153	21435238	0	1	1085	0
chr20	21437390	21438018	brain_AmbionMAQC.45097	0	.	21437390	21438018	0	1	628	0
chr20	21450117	21450685	A549_Myers.87869	0	.	21450117	21450685	0	1	568	0
chr20	21450306	21451391	brain_AmbionMAQC.45101	0	.	21450306	21451391	0	1	1085	0
chr20	21451022	21451410	A549_Myers.87870	0	.	21451022	21451410	0	1	388	0
chr20	21454143	21498886	pHIT000120946	0	+	21454143	21498886	0	4	34,98,104,100	0,32115,43140,44643
chr20	21459061	21463654	H1_polyA+.115610	0	+	21459061	21463654	0	3	65,123,655	0,2957,3938
chr20	21486060	21489478	B_cells_Cheung.195785	0	+	21486060	21489478	0	2	518,949	0,2469
chr20	21487889	21489900	CD4_Plagnol_activated.65533	0	.	21487889	21489900	0	1	2011	0
chr20	21488527	21489974	CD4_Plagnol_resting.63576	0	.	21488527	21489974	0	1	1447	0
chr20	21488532	21489594	B_Cells_Pritchard.3207741	0	.	21488532	21489594	0	1	1062	0
chr20	21490109	21491814	CD4_Plagnol_resting.63577	0	.	21490109	21491814	0	1	1705	0
chr20	21490931	21491492	B_cells_Cheung.195790	0	.	21490931	21491492	0	1	561	0
chr20	21498633	21544773	brain_AmbionMAQC.45094	0	+	21498633	21544773	0	4	253,136,145,469	0,42552,45387,45671
chr20	21539424	21632223	HIT000429536	0	-	21539424	21632223	0	5	485,326,84,94,264	0,1565,15556,16562,92535
chr20	21599476	21599976	BT474_Burge_Thompson.34854	0	.	21599476	21599976	0	1	500	0
chr20	21599529	21599881	B_Cells_Pritchard.3208089	0	.	21599529	21599881	0	1	352	0
chr20	21631729	21632118	A549_Myers.87889	0	.	21631729	21632118	0	1	389	0
chr20	21885321	21885745	A549_Myers.87897	0	.	21885321	21885745	0	1	424	0
chr20	22173526	22173869	B_cells_Cheung.195802	0	.	22173526	22173869	0	1	343	0
chr20	22336316	22336721	A549_Myers.87904	0	.	22336316	22336721	0	1	405	0
chr20	22400153	22400694	A549_Myers.87915	0	.	22400153	22400694	0	1	541	0
chr20	22418327	22418679	A549_Myers.87916	0	.	22418327	22418679	0	1	352	0
chr20	22438751	22452856	Rinn_00028332	0	-	22438751	22452856	0	4	686,298,269,267	0,10309,13233,13838
chr20	22445070	22447538	HepG2_Caltech_ENCODE.38614	0	.	22445070	22447538	0	1	2468	0
chr20	22445070	22452819	HepG2_Caltech_ENCODE.38616	0	-	22445070	22452819	0	3	575,1198,834	0,3090,6915
chr20	22446920	22447496	liver_polyA+.131120	0	.	22446920	22447496	0	1	576	0
chr20	22448315	22449688	liver_polyA+.131123	0	.	22448315	22449688	0	1	1373	0
chr20	22457858	22458835	B_cells_Cheung.195811	0	.	22457858	22458835	0	1	977	0
chr20	22459576	22461383	B_Cells_Pritchard.3209921	0	.	22459576	22461383	0	1	1807	0
chr20	22460726	22466815	B_cells_Cheung.195814	0	-	22460726	22466815	0	2	2934,935	0,5154
chr20	22462228	22463739	B_Cells_Pritchard.3209927	0	.	22462228	22463739	0	1	1511	0
chr20	22477612	22478449	B_cells_Cheung.195821	0	.	22477612	22478449	0	1	837	0
chr20	22486519	22497789	pHIT000035320	0	+	22486519	22497789	0	3	22,87,410	0,507,10860
chr20	22489172	22507116	liver_polyA+.131126	0	-	22489172	22507116	0	4	4582,128,1985,4079	0,6148,7259,13865
chr20	22489172	22493818	kidney_Gilad.84819	0	.	22489172	22493818	0	1	4646	0
chr20	22489189	22507347	Rinn_00028636	0	-	22489189	22507347	0	5	2740,1223,124,93,201	0,3342,6130,7241,17957
chr20	22489190	22507280	ENST00000450346	0	-	22489190	22507280	0	4	4564,123,92,133	0,6130,7241,17957
chr20	22489191	22507280	NR_001558	0	-	22489191	22507280	0	4	4563,123,92,133	0,6129,7240,17956
chr20	22489192	22507280	Rinn_00027846	0	-	22489192	22507280	0	4	4562,124,93,134	0,6127,7238,17954
chr20	22489208	22498336	prostate_carcinoma.99616	0	.	22489208	22498336	0	1	9128	0
chr20	22489208	22498336	prostate_carcinoma.99617	0	-	22489208	22498336	0	2	4546,3016	0,6112
chr20	22490152	22491538	prostate_normal.59564	0	.	22490152	22491538	0	1	1386	0
chr20	22490628	22491163	A549_Myers.87924	0	.	22490628	22491163	0	1	535	0
chr20	22490639	22491808	H1_polyA+.115614	0	.	22490639	22491808	0	1	1169	0
chr20	22496339	22496887	kidney_Gilad.84804	0	.	22496339	22496887	0	1	548	0
chr20	22504726	22506204	prostate_carcinoma.99618	0	.	22504726	22506204	0	1	1478	0
chr20	22506269	22506721	A549_Myers.87967	0	.	22506269	22506721	0	1	452	0
chr20	22506575	22507375	prostate_carcinoma.99619	0	.	22506575	22507375	0	1	800	0
chr20	22506903	22507315	A549_Myers.87968	0	.	22506903	22507315	0	1	412	0
chr20	22515354	22515929	A549_Myers.87930	0	.	22515354	22515929	0	1	575	0
chr20	22604708	22613514	Rinn_00027884	0	-	22604708	22613514	0	2	2187,133	0,8673
chr20	22604709	22613516	HIT000012164	0	-	22604709	22613516	0	2	2186,134	0,8673
chr20	22604709	22613516	ENST00000441568	0	-	22604709	22613516	0	2	2186,134	0,8673
chr20	22613565	22657111	Rinn_00028128	0	+	22613565	22657111	0	3	31,331,93	0,629,43453
chr20	22620594	22621014	A549_Myers.87936	0	.	22620594	22621014	0	1	420	0
chr20	22682405	22682780	A549_Myers.87945	0	.	22682405	22682780	0	1	375	0
chr20	22844892	22850539	B_Cells_Pritchard.3210879	0	+	22844892	22850539	0	2	728,608	0,5039
chr20	22844944	22845623	MCF7_Burge_Thompson.31941	0	.	22844944	22845623	0	1	679	0
chr20	22873494	22874443	B_cells_Cheung.195846	0	.	22873494	22874443	0	1	949	0
chr20	22873529	22875001	B_Cells_Pritchard.3210975	0	.	22873529	22875001	0	1	1472	0
chr20	22927745	22928127	A549_Myers.87961	0	.	22927745	22928127	0	1	382	0
chr20	22935293	22959422	HIT000098104	0	-	22935293	22959422	0	5	2339,1191,313,103,242	0,2422,3927,10099,23887
chr20	22979502	22980353	MDAMB231_Thompson.22286	0	.	22979502	22980353	0	1	851	0
chr20	22979870	22982657	MCF7_Burge_Thompson.31945	0	.	22979870	22982657	0	1	2787	0
chr20	22980698	22982401	prostate_carcinoma.99625	0	.	22980698	22982401	0	1	1703	0
chr20	22980763	22981354	A549_Myers.87974	0	.	22980763	22981354	0	1	591	0
chr20	22981725	22982053	A549_Myers.87975	0	.	22981725	22982053	0	1	328	0
chr20	23001907	23003585	prostate_carcinoma.99628	0	.	23001907	23003585	0	1	1678	0
chr20	23003130	23003611	prostate_normal.59569	0	.	23003130	23003611	0	1	481	0
chr20	23005528	23006821	prostate_carcinoma.99629	0	.	23005528	23006821	0	1	1293	0
chr20	23026837	23027234	A549_Myers.87981	0	.	23026837	23027234	0	1	397	0
chr20	23042684	23043739	B_cells_Cheung.195859	0	.	23042684	23043739	0	1	1055	0
chr20	23044443	23047066	B_cells_Cheung.195862	0	-	23044443	23047066	0	2	1075,1193	0,1430
chr20	23045452	23046294	K562.45703	0	.	23045452	23046294	0	1	842	0
chr20	23051897	23061447	K562.45706	0	-	23051897	23061447	0	3	3278,201,312	0,5704,9238
chr20	23053688	23061258	HIT000075222	0	-	23053688	23061258	0	4	1487,101,201,123	0,3577,3913,7447
chr20	23053704	23061258	ENST00000443744	0	-	23053704	23061258	0	4	1471,101,201,123	0,3561,3897,7431
chr20	23053704	23061273	NR_034149	0	-	23053704	23061273	0	4	1471,101,201,138	0,3561,3897,7431
chr20	23076537	23076944	A549_Myers.87986	0	.	23076537	23076944	0	1	407	0
chr20	23076676	23081719	K562.45708	0	.	23076676	23081719	0	1	5043	0
chr20	23076722	23078576	HIT000013557	0	-	23076722	23078576	0	1	1854	0
chr20	23077001	23078279	MDAMB231_Thompson.22306	0	.	23077001	23078279	0	1	1278	0
chr20	23077267	23077652	B_cells_Cheung.195867	0	.	23077267	23077652	0	1	385	0
chr20	23077714	23078469	B_cells_Cheung.195868	0	.	23077714	23078469	0	1	755	0
chr20	23079229	23079634	A549_Myers.87987	0	.	23079229	23079634	0	1	405	0
chr20	23079568	23080994	MDAMB231_Thompson.22307	0	.	23079568	23080994	0	1	1426	0
chr20	23108812	23118907	Rinn_00028130	0	+	23108812	23118907	0	5	33,384,152,429,489	0,234,6223,7036,9606
chr20	23116307	23116636	A549_Myers.87991	0	.	23116307	23116636	0	1	329	0
chr20	23116342	23117661	Rinn_00028641	0	-	23116342	23117661	0	2	930,248	0,1071
chr20	23116478	23118019	prostate_carcinoma.99632	0	.	23116478	23118019	0	1	1541	0
chr20	23116597	23118942	HIT000016632	0	+	23116597	23118942	0	1	2345	0
chr20	23116823	23118998	prostate_normal.59572	0	.	23116823	23118998	0	1	2175	0
chr20	23116965	23117884	brain_AmbionMAQC.45130	0	.	23116965	23117884	0	1	919	0
chr20	23118186	23118885	prostate_carcinoma.99633	0	.	23118186	23118885	0	1	699	0
chr20	23118420	23118940	testes_Burge.53387	0	.	23118420	23118940	0	1	520	0
chr20	23118496	23118896	brain_AmbionMAQC.45129	0	.	23118496	23118896	0	1	400	0
chr20	23173835	23174575	A549_Myers.87993	0	.	23173835	23174575	0	1	740	0
chr20	23181907	23182980	REMC_MyoepithelialBreast.91667	0	.	23181907	23182980	0	1	1073	0
chr20	23183056	23234852	pHIT000120956	0	-	23183056	23234852	0	3	72,106,149	0,6122,51647
chr20	23183056	23245352	pHIT000094394	0	-	23183056	23245352	0	7	72,41,113,135,122,171,45	0,21210,25888,28816,51647,55432,62251
chr20	23183056	23245352	pHIT000035336	0	-	23183056	23245352	0	8	72,106,62,41,113,122,171,45	0,6122,20666,21210,25888,51647,55432,62251
chr20	23183056	23234856	pHIT000120958	0	-	23183056	23234856	0	3	72,135,153	0,28816,51647
chr20	23184415	23185299	REMC_MyoepithelialBreast.91668	0	.	23184415	23185299	0	1	884	0
chr20	23192455	23193512	REMC_MyoepithelialBreast.91670	0	.	23192455	23193512	0	1	1057	0
chr20	23216421	23217582	REMC_MyoepithelialBreast.91678	0	.	23216421	23217582	0	1	1161	0
chr20	23218856	23220428	B_Cells_Pritchard.3212085	0	.	23218856	23220428	0	1	1572	0
chr20	23219171	23220217	B_cells_Cheung.195873	0	.	23219171	23220217	0	1	1046	0
chr20	23223177	23223622	B_cells_Cheung.195874	0	.	23223177	23223622	0	1	445	0
chr20	23223224	23224651	REMC_MyoepithelialBreast.91682	0	.	23223224	23224651	0	1	1427	0
chr20	23225437	23227071	REMC_MyoepithelialBreast.91683	0	.	23225437	23227071	0	1	1634	0
chr20	23232671	23234469	B_cells_Cheung.195881	0	.	23232671	23234469	0	1	1798	0
chr20	23232822	23235033	REMC_MyoepithelialBreast.91688	0	.	23232822	23235033	0	1	2211	0
chr20	23232883	23233699	CD4_Plagnol_activated.65546	0	.	23232883	23233699	0	1	816	0
chr20	23232950	23234002	B_Cells_Pritchard.3212149	0	.	23232950	23234002	0	1	1052	0
chr20	23233345	23233667	CD4_Plagnol_resting.63582	0	.	23233345	23233667	0	1	322	0
chr20	23234579	23234995	B_cells_Cheung.195880	0	.	23234579	23234995	0	1	416	0
chr20	23236589	23238759	B_Cells_Pritchard.3212165	0	.	23236589	23238759	0	1	2170	0
chr20	23247758	23248158	B_cells_Cheung.196243	0	.	23247758	23248158	0	1	400	0
chr20	23248970	23264500	REMC_MyoepithelialBreast.91693	0	.	23248970	23264500	0	1	15530	0
chr20	23249434	23251364	B_cells_Cheung.196244	0	.	23249434	23251364	0	1	1930	0
chr20	23249589	23253689	Rinn_00028341	0	-	23249589	23253689	0	3	257,48,51	0,1365,4049
chr20	23249604	23256117	REMC_LuminalBreast.98641	0	.	23249604	23256117	0	1	6513	0
chr20	23250059	23250931	HepG2_Caltech_ENCODE.38630	0	.	23250059	23250931	0	1	872	0
chr20	23250180	23251540	melanoma_Garraway_short_term_cultures.69510	0	.	23250180	23251540	0	1	1360	0
chr20	23250467	23251290	REMC_BreastStem.49494	0	.	23250467	23251290	0	1	823	0
chr20	23252065	23255939	B_cells_Cheung.196246	0	.	23252065	23255939	0	1	3874	0
chr20	23252516	23253728	H1_polyA+.115620	0	.	23252516	23253728	0	1	1212	0
chr20	23255223	23255936	B_Cells_Pritchard.3212241	0	-	23255223	23255936	0	1	713	0
chr20	23256229	23262215	REMC_LuminalBreast.98642	0	.	23256229	23262215	0	1	5986	0
chr20	23256525	23257502	HepG2_Caltech_ENCODE.38632	0	.	23256525	23257502	0	1	977	0
chr20	23257050	23261412	B_cells_Cheung.196247	0	.	23257050	23261412	0	4	651,573,891,558	0,827,1479,3804
chr20	23257766	23259321	B_Cells_Pritchard.3212203	0	.	23257766	23259321	0	1	1555	0
chr20	23258011	23259263	MIP101.69622	0	.	23258011	23259263	0	1	1252	0
chr20	23262521	23264570	B_cells_Cheung.196249	0	.	23262521	23264570	0	1	2049	0
chr20	23262555	23267569	B_Cells_Pritchard.3212261	0	+	23262555	23267569	0	2	2003,594	0,4420
chr20	23266652	23274380	REMC_MyoepithelialBreast.91695	0	.	23266652	23274380	0	1	7728	0
chr20	23267622	23268446	B_cells_Cheung.196251	0	.	23267622	23268446	0	1	824	0
chr20	23268563	23269041	A549_Myers.87999	0	.	23268563	23269041	0	1	478	0
chr20	23268620	23268981	B_Cells_Pritchard.3212257	0	.	23268620	23268981	0	1	361	0
chr20	23272562	23274388	B_Cells_Pritchard.3212287	0	.	23272562	23274388	0	1	1826	0
chr20	23274540	23275624	H1_polyA+.115621	0	.	23274540	23275624	0	1	1084	0
chr20	23274582	23276946	B_Cells_Pritchard.3212289	0	.	23274582	23276946	0	1	2364	0
chr20	23284830	23285209	A549_Myers.88036	0	.	23284830	23285209	0	1	379	0
chr20	23285229	23286642	Rinn_00028023	0	-	23285229	23286642	0	3	377,88,52	0,457,1361
chr20	23285230	23286642	ENST00000442440	0	-	23285230	23286642	0	3	376,87,51	0,457,1361
chr20	23285230	23286492	ENST00000444981	0	-	23285230	23286492	0	3	232,87,135	0,457,1127
chr20	23285239	23286763	T47D_Burge_Thompson.29303	0	-	23285239	23286763	0	2	532,406	0,1118
chr20	23285243	23286763	Rinn_00028343	0	-	23285243	23286763	0	3	363,88,407	0,443,1113
chr20	23285463	23286754	Rinn_00028344	0	-	23285463	23286754	0	3	143,79,164	0,223,1127
chr20	23286237	23286768	MCF7_Burge_Thompson.31949	0	.	23286237	23286768	0	1	531	0
chr20	23286620	23287555	REMC_BreastStem.49491	0	.	23286620	23287555	0	1	935	0
chr20	23287038	23288351	REMC_LuminalBreast.98651	0	.	23287038	23288351	0	1	1313	0
chr20	23287588	23288540	REMC_MyoepithelialBreast.91700	0	.	23287588	23288540	0	1	952	0
chr20	23362568	23365660	MIP101.69643	0	.	23362568	23365660	0	1	3092	0
chr20	23445512	23446706	HIT000025913	0	+	23445512	23446706	0	1	1194	0
chr20	23927068	23928270	Rinn_00028347	0	-	23927068	23928270	0	2	357,10	0,1192
chr20	23950269	23950612	A549_Myers.88051	0	.	23950269	23950612	0	1	343	0
chr20	23972473	23972846	A549_Myers.88052	0	.	23972473	23972846	0	1	373	0
chr20	24019565	24040596	Rinn_00028348	0	-	24019565	24040596	0	2	4085,237	0,20794
chr20	24128401	24153224	Rinn_00027861	0	+	24128401	24153224	0	4	69,1344,81,886	0,11582,19856,23937
chr20	24136594	24136907	A549_Myers.88059	0	.	24136594	24136907	0	1	313	0
chr20	24360164	24360681	B_Cells_Pritchard.3214295	0	.	24360164	24360681	0	1	517	0
chr20	24613726	24614200	ZR751_Thompson.24278	0	.	24613726	24614200	0	1	474	0
chr20	24613741	24614114	BT474_Burge_Thompson.34890	0	.	24613741	24614114	0	1	373	0
chr20	24621414	24627882	pHIT000120969	0	-	24621414	24627882	0	5	130,245,57,77,76	0,631,995,1397,6392
chr20	24622799	24623229	A549_Myers.88100	0	.	24622799	24623229	0	1	430	0
chr20	24659731	24663126	H1_polyA+.115681	0	.	24659731	24663126	0	1	3395	0
chr20	24662714	24663594	brain_AmbionMAQC.45141	0	.	24662714	24663594	0	1	880	0
chr20	24674577	24675394	A549_Myers.88104	0	.	24674577	24675394	0	1	817	0
chr20	24692936	24693286	A549_Myers.88106	0	.	24692936	24693286	0	1	350	0
chr20	24714655	24714971	A549_Myers.88110	0	.	24714655	24714971	0	1	316	0
chr20	24719329	24719647	A549_Myers.88113	0	.	24719329	24719647	0	1	318	0
chr20	24727601	24728329	A549_Myers.88115	0	.	24727601	24728329	0	1	728	0
chr20	24730322	24731325	brain_AmbionMAQC.45145	0	.	24730322	24731325	0	1	1003	0
chr20	24741631	24742175	brain_AmbionMAQC.45147	0	.	24741631	24742175	0	1	544	0
chr20	24744614	24744959	brain_AmbionMAQC.45148	0	.	24744614	24744959	0	1	345	0
chr20	24744642	24745021	A549_Myers.88119	0	.	24744642	24745021	0	1	379	0
chr20	24748856	24751663	B_Cells_Pritchard.3215507	0	-	24748856	24751663	0	3	410,846,699	0,1254,2108
chr20	24750825	24751485	REMC_MyoepithelialBreast.91761	0	.	24750825	24751485	0	1	660	0
chr20	24752691	24753012	A549_Myers.88121	0	.	24752691	24753012	0	1	321	0
chr20	24756015	24758589	A549_Myers.88122	0	-	24756015	24758589	0	2	121,264	0,2310
chr20	24799471	24799941	A549_Myers.88126	0	.	24799471	24799941	0	1	470	0
chr20	24801440	24801901	A549_Myers.88128	0	.	24801440	24801901	0	1	461	0
chr20	24828572	24828959	A549_Myers.88130	0	.	24828572	24828959	0	1	387	0
chr20	24838419	24842380	pHIT000035352	0	+	24838419	24842380	0	3	138,53,235	0,286,3726
chr20	24841319	24841815	A549_Myers.88131	0	.	24841319	24841815	0	1	496	0
chr20	24846902	24847620	A549_Myers.88132	0	.	24846902	24847620	0	1	718	0
chr20	24858900	24861814	REMC_LuminalBreast.98629	0	.	24858900	24861814	0	1	2914	0
chr20	24859096	24861852	REMC_MyoepithelialBreast.91767	0	.	24859096	24861852	0	1	2756	0
chr20	24860801	24861504	MDAMB468_Thompson.24743	0	.	24860801	24861504	0	1	703	0
chr20	24874952	24875794	REMC_LuminalBreast.98628	0	.	24874952	24875794	0	1	842	0
chr20	24928117	24929242	B_Cells_Pritchard.3215977	0	-	24928117	24929242	0	1	1125	0
chr20	24990404	24996716	prostate_normal.59622	0	-	24990404	24996716	0	3	163,631,314	0,5306,5998
chr20	24991601	24994880	brain_AmbionMAQC.45152	0	.	24991601	24994880	0	1	3279	0
chr20	24992351	24992753	A549_Myers.88165	0	.	24992351	24992753	0	1	402	0
chr20	24994980	24997490	brain_AmbionMAQC.45153	0	.	24994980	24997490	0	1	2510	0
chr20	24995683	24996135	B_Cells_Pritchard.3216055	0	.	24995683	24996135	0	1	452	0
chr20	24995693	24996807	A549_Myers.88168	0	-	24995693	24996807	0	2	310,493	0,621
chr20	24995693	24996302	A549_Myers.88169	0	.	24995693	24996302	0	1	609	0
chr20	24995710	24996716	prostate_normal.59623	0	.	24995710	24996716	0	1	1006	0
chr20	24995884	24996194	BT474_Burge_Thompson.34893	0	.	24995884	24996194	0	1	310	0
chr20	25019262	25019764	A549_Myers.88181	0	.	25019262	25019764	0	1	502	0
chr20	25045311	25045626	A549_Myers.88184	0	.	25045311	25045626	0	1	315	0
chr20	25047143	25047612	A549_Myers.88185	0	.	25047143	25047612	0	1	469	0
chr20	25058663	25074320	pHIT000120976	0	+	25058663	25074320	0	5	204,405,69,63,108	0,280,979,2975,15549
chr20	25069424	25077426	ENST00000454676	0	-	25069424	25077426	0	4	2043,146,145,834	0,2579,3490,7168
chr20	25069432	25077426	Rinn_00027850	0	-	25069432	25077426	0	4	2035,147,146,835	0,2570,3481,7159
chr20	25069433	25077426	NR_027091	0	-	25069433	25077426	0	4	2034,146,145,834	0,2570,3481,7159
chr20	25069501	25070229	brain_AmbionMAQC.45165	0	.	25069501	25070229	0	1	728	0
chr20	25069703	25070880	H1_polyA+.115752	0	.	25069703	25070880	0	1	1177	0
chr20	25070494	25077430	HIT000428253	0	-	25070494	25077430	0	4	342,517,127,196	0,1138,2438,6740
chr20	25074004	25074305	A549_Myers.88189	0	.	25074004	25074305	0	1	301	0
chr20	25074926	25075456	A549_Myers.88190	0	.	25074926	25075456	0	1	530	0
chr20	25075506	25076000	A549_Myers.88191	0	.	25075506	25076000	0	1	494	0
chr20	25108094	25109507	prostate_carcinoma.99684	0	.	25108094	25109507	0	1	1413	0
chr20	25108395	25108913	prostate_normal.59644	0	.	25108395	25108913	0	1	518	0
chr20	25111603	25112427	REMC_LuminalBreast.98639	0	.	25111603	25112427	0	1	824	0
chr20	25115808	25116790	prostate_carcinoma.100543	0	.	25115808	25116790	0	1	982	0
chr20	25157785	25160569	HIT000045306	0	-	25157785	25160569	0	1	2784	0
chr20	25159560	25176308	MB435_Burge.43671	0	-	25159560	25176308	0	2	75,636	0,16112
chr20	25163237	25165859	REMC_MyoepithelialBreast.92013	0	.	25163237	25165859	0	1	2622	0
chr20	25164564	25164983	prostate_carcinoma.100554	0	.	25164564	25164983	0	1	419	0
chr20	25165044	25165841	A549_Myers.88208	0	.	25165044	25165841	0	1	797	0
chr20	25165067	25165838	prostate_carcinoma.100555	0	.	25165067	25165838	0	1	771	0
chr20	25165161	25165810	prostate_normal.59987	0	.	25165161	25165810	0	1	649	0
chr20	25165271	25165834	brain_AmbionMAQC.45167	0	.	25165271	25165834	0	1	563	0
chr20	25170795	25173116	REMC_MyoepithelialBreast.92014	0	.	25170795	25173116	0	1	2321	0
chr20	25170855	25173049	REMC_LuminalBreast.98807	0	.	25170855	25173049	0	1	2194	0
chr20	25170908	25172566	B_Cells_Pritchard.3216431	0	-	25170908	25172566	0	1	1658	0
chr20	25171663	25173074	melanoma_Garraway_short_term_cultures.69556	0	.	25171663	25173074	0	1	1411	0
chr20	25528639	25529608	B_cells_Cheung.196081	0	.	25528639	25529608	0	1	969	0
chr20	25529273	25530675	BT474_Burge_Thompson.34914	0	.	25529273	25530675	0	1	1402	0
chr20	25529862	25530645	H1_polyA+.115787	0	.	25529862	25530645	0	1	783	0
chr20	25530028	25530508	B_cells_Cheung.196082	0	.	25530028	25530508	0	1	480	0
chr20	25530070	25530885	B_Cells_Pritchard.3217143	0	.	25530070	25530885	0	1	815	0
chr20	25530186	25530698	MCF7_Burge_Thompson.31989	0	.	25530186	25530698	0	1	512	0
chr20	25534670	25539507	REMC_MyoepithelialBreast.91875	0	.	25534670	25539507	0	1	4837	0
chr20	25535034	25539551	REMC_LuminalBreast.98680	0	.	25535034	25539551	0	1	4517	0
chr20	25556860	25557347	ZR751_Thompson.24295	0	.	25556860	25557347	0	1	487	0
chr20	25557048	25557653	melanoma_Garraway_short_term_cultures.69597	0	.	25557048	25557653	0	1	605	0
chr20	25561451	25562193	HepG2_Caltech_ENCODE.38702	0	.	25561451	25562193	0	1	742	0
chr20	25561593	25562829	B_cells_Cheung.196103	0	.	25561593	25562829	0	1	1236	0
chr20	25561719	25563131	REMC_LuminalBreast.98682	0	.	25561719	25563131	0	1	1412	0
chr20	25570872	25573233	B_cells_Cheung.196112	0	.	25570872	25573233	0	1	2361	0
chr20	25575416	25577137	H1_polyA+.115843	0	.	25575416	25577137	0	1	1721	0
chr20	25575450	25580172	REMC_LuminalBreast.98724	0	.	25575450	25580172	0	1	4722	0
chr20	25577286	25577918	MIP101.69770	0	.	25577286	25577918	0	1	632	0
chr20	25580967	25582206	B_Cells_Pritchard.3218143	0	+	25580967	25582206	0	1	1239	0
chr20	25581067	25581810	B_cells_Cheung.196120	0	.	25581067	25581810	0	1	743	0
chr20	25581203	25581730	MIP101.69771	0	.	25581203	25581730	0	1	527	0
chr20	25582215	25582537	B_cells_Cheung.196121	0	.	25582215	25582537	0	1	322	0
chr20	25584447	25590490	H1_polyA+.115849	0	.	25584447	25590490	0	1	6043	0
chr20	25585407	25587898	REMC_LuminalBreast.98726	0	.	25585407	25587898	0	1	2491	0
chr20	25586360	25587299	prostate_carcinoma.99748	0	.	25586360	25587299	0	1	939	0
chr20	25586363	25587294	B_cells_Cheung.196125	0	.	25586363	25587294	0	1	931	0
chr20	25587471	25589352	B_cells_Cheung.196126	0	.	25587471	25589352	0	1	1881	0
chr20	25587949	25589125	MIP101.69775	0	.	25587949	25589125	0	1	1176	0
chr20	25588492	25590525	REMC_MyoepithelialBreast.91889	0	.	25588492	25590525	0	1	2033	0
chr20	25590946	25591290	B_cells_Cheung.196129	0	.	25590946	25591290	0	1	344	0
chr20	25593835	25594995	REMC_LuminalBreast.98728	0	.	25593835	25594995	0	1	1160	0
chr20	25641505	25642238	REMC_LuminalBreast.98688	0	.	25641505	25642238	0	1	733	0
chr20	25663990	25676745	HepG2_Caltech_ENCODE.38710	0	-	25663990	25676745	0	2	798,2080	0,10675
chr20	25669082	25676845	B_cells_Cheung.196162	0	.	25669082	25676845	0	1	7763	0
chr20	25669804	25676713	B_Cells_Pritchard.3217321	0	.	25669804	25676713	0	1	6909	0
chr20	25670512	25676745	HepG2_Caltech_ENCODE.38712	0	.	25670512	25676745	0	1	6233	0
chr20	25671739	25673972	melanoma_Garraway_short_term_cultures.69614	0	.	25671739	25673972	0	1	2233	0
chr20	25672549	25674058	MIP101.69733	0	.	25672549	25674058	0	1	1509	0
chr20	25672876	25674046	brain_AmbionMAQC.45197	0	.	25672876	25674046	0	1	1170	0
chr20	25674100	25676793	melanoma_Garraway_short_term_cultures.69615	0	.	25674100	25676793	0	1	2693	0
chr20	25674152	25675092	MIP101.69734	0	.	25674152	25675092	0	1	940	0
chr20	25674264	25680962	prostate_carcinoma.99768	0	+	25674264	25680962	0	2	341,1157	0,5541
chr20	25674264	25674801	prostate_carcinoma.99769	0	.	25674264	25674801	0	1	537	0
chr20	25674903	25676706	brain_AmbionMAQC.45198	0	.	25674903	25676706	0	1	1803	0
chr20	25675056	25675911	prostate_normal.59703	0	.	25675056	25675911	0	1	855	0
chr20	25675210	25676780	MIP101.69735	0	.	25675210	25676780	0	1	1570	0
chr20	25677554	25678385	MIP101.69736	0	.	25677554	25678385	0	1	831	0
chr20	25678057	25680440	Rinn_00028355	0	-	25678057	25680440	0	2	179,1502	0,881
chr20	25679170	25681071	B_Cells_Pritchard.3217337	0	.	25679170	25681071	0	1	1901	0
chr20	25679730	25680374	A549_Myers.88305	0	.	25679730	25680374	0	1	644	0
chr20	25679823	25680124	prostate_normal.59705	0	.	25679823	25680124	0	1	301	0
chr20	25797456	25797772	prostate_carcinoma.99775	0	.	25797456	25797772	0	1	316	0
chr20	25914174	25914963	B_cells_Cheung.196177	0	.	25914174	25914963	0	1	789	0
chr20	25915652	25916362	B_cells_Cheung.196179	0	.	25915652	25916362	0	1	710	0
chr20	25918432	25920361	B_cells_Cheung.196182	0	.	25918432	25920361	0	1	1929	0
chr20	25918440	25920445	B_Cells_Pritchard.3217559	0	.	25918440	25920445	0	1	2005	0
chr20	25923418	25924060	B_Cells_Pritchard.3217573	0	.	25923418	25924060	0	1	642	0
chr20	25926507	25926826	B_cells_Cheung.196188	0	.	25926507	25926826	0	1	319	0
chr20	25936631	25938980	B_Cells_Pritchard.3217611	0	-	25936631	25938980	0	2	167,545	0,1804
chr20	25938421	25938792	B_cells_Cheung.196192	0	.	25938421	25938792	0	1	371	0
chr20	25938450	25938841	IMR90_UCSD_REMC.49607	0	-	25938450	25938841	0	1	391	0
chr20	25938460	25939036	HepG2_Caltech_ENCODE.38720	0	.	25938460	25939036	0	1	576	0
chr20	25938498	25938818	H9_polyA+.45830	0	.	25938498	25938818	0	1	320	0
chr20	25944531	25947089	HIT000095262_04	0	+	25944531	25947089	0	1	2558	0
chr20	26064024	26064380	K562.45763	0	.	26064024	26064380	0	1	356	0
chr20	26065485	26065847	BT474_Burge_Thompson.34948	0	.	26065485	26065847	0	1	362	0
chr20	26119624	26122582	ENST00000416638	0	+	26119624	26122582	0	2	67,559	0,2399
chr20	26136997	26138296	HeLa_Bartel_miR-1_12hr.30989	0	-	26136997	26138296	0	2	148,397	0,902
chr20	26136999	26137359	kidney_Gilad.84917	0	.	26136999	26137359	0	1	360	0
chr20	26137627	26138509	testes_Burge.53496	0	.	26137627	26138509	0	1	882	0
chr20	26137629	26138510	MIP101.69738	0	.	26137629	26138510	0	1	881	0
chr20	26137633	26138504	K562.45780	0	.	26137633	26138504	0	1	871	0
chr20	26137648	26138502	prostate_carcinoma.99780	0	-	26137648	26138502	0	2	78,603	0,251
chr20	26137648	26138502	prostate_carcinoma.99778	0	.	26137648	26138502	0	1	854	0
chr20	26137653	26138522	B_cells_Cheung.196195	0	.	26137653	26138522	0	1	869	0
chr20	26137653	26138547	HeLa_polyA-_Chen.18673	0	.	26137653	26138547	0	1	894	0
chr20	26137656	26138296	MeWo_Garraway.36847	0	.	26137656	26138296	0	1	640	0
chr20	26137682	26138604	CD4_Plagnol_activated.65594	0	.	26137682	26138604	0	1	922	0
chr20	26137698	26138319	BT474_Burge_Thompson.34949	0	.	26137698	26138319	0	1	621	0
chr20	26137707	26138532	H9_polyA+.45832	0	.	26137707	26138532	0	1	825	0
chr20	26137719	26138295	H1_rRNA-depleted_UCSD_REMC.87557	0	.	26137719	26138295	0	1	576	0
chr20	26137721	26138296	HeLa_Bartel_miR-1_32hr.12832	0	.	26137721	26138296	0	1	575	0
chr20	26137731	26138293	IMR90_UCSD_REMC.49614	0	+	26137731	26138293	0	1	562	0
chr20	26137761	26138297	HeLa_polyA+_Chen.35783	0	.	26137761	26138297	0	1	536	0
chr20	26137764	26138315	MCF7_Burge_Thompson.32010	0	.	26137764	26138315	0	1	551	0
chr20	26137767	26138296	HeLa_Bartel_WT_32hr.11896	0	.	26137767	26138296	0	1	529	0
chr20	26137769	26138522	MDAMB468_Thompson.24762	0	.	26137769	26138522	0	1	753	0
chr20	26137769	26138618	CD4_Plagnol_resting.63666	0	.	26137769	26138618	0	1	849	0
chr20	26137770	26138294	MeI_Garraway.17781	0	.	26137770	26138294	0	1	524	0
chr20	26137773	26138296	BT20_Thompson.22329	0	.	26137773	26138296	0	1	523	0
chr20	26137776	26138314	MDAMB231_Thompson.22347	0	.	26137776	26138314	0	1	538	0
chr20	26137778	26138296	HeLa_Bartel_WT_12hr.32361	0	.	26137778	26138296	0	1	518	0
chr20	26137779	26138296	HeLa_Bartel_miR-155_12hr.32514	0	.	26137779	26138296	0	1	517	0
chr20	26137779	26138296	HeLa_Bartel_miR-1_12hr.30990	0	.	26137779	26138296	0	1	517	0
chr20	26137784	26138372	liver_polyA+.131306	0	.	26137784	26138372	0	1	588	0
chr20	26137784	26138296	HeLa_Bartel_miR-155_32hr.17860	0	.	26137784	26138296	0	1	512	0
chr20	26137785	26138172	kidney_Gilad.84915	0	.	26137785	26138172	0	1	387	0
chr20	26137785	26138296	brain_AmbionMAQC.45214	0	.	26137785	26138296	0	1	511	0
chr20	26137785	26138315	T47D_Burge_Thompson.29358	0	.	26137785	26138315	0	1	530	0
chr20	26137786	26138298	adipose_Burge.38978	0	.	26137786	26138298	0	1	512	0
chr20	26137786	26138293	lymph_node_Burge.50298	0	.	26137786	26138293	0	1	507	0
chr20	26137786	26138272	breast_Burge.40687	0	.	26137786	26138272	0	1	486	0
chr20	26137786	26138296	MB435_Burge.43732	0	.	26137786	26138296	0	1	510	0
chr20	26137786	26138371	prostate_normal.59709	0	.	26137786	26138371	0	1	585	0
chr20	26137786	26138269	HME_Burge.40982	0	.	26137786	26138269	0	1	483	0
chr20	26137786	26138273	NEC_from_H9.75343	0	.	26137786	26138273	0	1	487	0
chr20	26137787	26138296	colon_Burge.38118	0	.	26137787	26138296	0	1	509	0
chr20	26137787	26138269	skeletal_muscle_Burge.29436	0	.	26137787	26138269	0	1	482	0
chr20	26137787	26138362	ZR751_Thompson.24306	0	.	26137787	26138362	0	1	575	0
chr20	26137790	26138295	MCF10A_Thompson.21634	0	.	26137790	26138295	0	1	505	0
chr20	26137793	26138296	REMC_LuminalBreast.98693	0	.	26137793	26138296	0	1	503	0
chr20	26137983	26138296	REMC_MyoepithelialBreast.91845	0	.	26137983	26138296	0	1	313	0
chr20	26137984	26138297	REMC_BreastStem.49547	0	.	26137984	26138297	0	1	313	0
chr20	28130407	28130712	brain_AmbionMAQC.45216	0	.	28130407	28130712	0	1	305	0
chr20	28130520	28131025	B_Cells_Pritchard.3217919	0	.	28130520	28131025	0	1	505	0
chr20	28131959	28132624	K562.45782	0	.	28131959	28132624	0	1	665	0
chr20	28132439	28133472	brain_AmbionMAQC.45218	0	.	28132439	28133472	0	1	1033	0
chr20	28132805	28133765	B_Cells_Pritchard.3217931	0	.	28132805	28133765	0	1	960	0
chr20	28134027	28134666	REMC_MyoepithelialBreast.91854	0	.	28134027	28134666	0	1	639	0
chr20	28134078	28134505	B_Cells_Pritchard.3217933	0	.	28134078	28134505	0	1	427	0
chr20	28134102	28134930	brain_AmbionMAQC.45217	0	.	28134102	28134930	0	1	828	0
chr20	28134113	28134498	prostate_carcinoma.99781	0	.	28134113	28134498	0	1	385	0
chr20	28135297	28136648	ENST00000454331	0	-	28135297	28136648	0	2	512,41	0,1310
chr20	28135441	28135796	B_cells_Cheung.196197	0	.	28135441	28135796	0	1	355	0
chr20	28135445	28135795	B_Cells_Pritchard.3217939	0	.	28135445	28135795	0	1	350	0
chr20	28138748	28139366	melanoma_Garraway_short_term_cultures.69622	0	.	28138748	28139366	0	1	618	0
chr20	28224737	28225296	K562.45785	0	.	28224737	28225296	0	1	559	0
chr20	28266445	28267381	MIP101.69740	0	.	28266445	28267381	0	1	936	0
chr20	28266445	28267404	A549_Myers.88358	0	.	28266445	28267404	0	1	959	0
chr20	28266452	28267564	prostate_normal.59719	0	.	28266452	28267564	0	1	1112	0
chr20	28266742	28267276	CD4_Plagnol_resting.63664	0	.	28266742	28267276	0	1	534	0
chr20	29554555	29554860	A549_Myers.88385	0	.	29554555	29554860	0	1	305	0
chr20	29627082	29629506	CD4_Plagnol_resting.63669	0	.	29627082	29629506	0	1	2424	0
chr20	29627530	29629516	B_cells_Cheung.196278	0	.	29627530	29629516	0	1	1986	0
chr20	29627580	29629656	melanoma_Garraway_short_term_cultures.69661	0	.	29627580	29629656	0	1	2076	0
chr20	29627595	29629195	prostate_carcinoma.99824	0	.	29627595	29629195	0	1	1600	0
chr20	29630304	29631149	B_cells_Cheung.196280	0	.	29630304	29631149	0	1	845	0
chr20	29630386	29631148	H1_polyA+.116032	0	.	29630386	29631148	0	1	762	0
chr20	29630500	29631131	melanoma_Garraway_short_term_cultures.69662	0	.	29630500	29631131	0	1	631	0
chr20	29630512	29631125	K562.45836	0	.	29630512	29631125	0	1	613	0
chr20	29630521	29631110	CD4_Plagnol_activated.65609	0	.	29630521	29631110	0	1	589	0
chr20	29630521	29631141	prostate_carcinoma.99823	0	.	29630521	29631141	0	1	620	0
chr20	29630556	29631136	BT474_Burge_Thompson.35023	0	.	29630556	29631136	0	1	580	0
chr20	29630676	29631127	MCF7_Burge_Thompson.32029	0	.	29630676	29631127	0	1	451	0
chr20	29635278	29636582	REMC_MyoepithelialBreast.91991	0	.	29635278	29636582	0	1	1304	0
chr20	29635316	29636264	H1_polyA+.116036	0	.	29635316	29636264	0	1	948	0
chr20	29638530	29639405	REMC_MyoepithelialBreast.91993	0	.	29638530	29639405	0	1	875	0
chr20	29641620	29643584	REMC_MyoepithelialBreast.91996	0	.	29641620	29643584	0	1	1964	0
chr20	29642078	29642901	H1_polyA+.116040	0	.	29642078	29642901	0	1	823	0
chr20	29644481	29647997	REMC_MyoepithelialBreast.91997	0	.	29644481	29647997	0	1	3516	0
chr20	29644844	29649573	H1_polyA+.116033	0	.	29644844	29649573	0	1	4729	0
chr20	29645041	29647429	HeLa_polyA-_Chen.18635	0	.	29645041	29647429	0	1	2388	0
chr20	29645134	29645970	HeLa_polyA+_Chen.35826	0	.	29645134	29645970	0	1	836	0
chr20	29645697	29648157	HepG2_Caltech_ENCODE.38748	0	.	29645697	29648157	0	1	2460	0
chr20	29645729	29648058	A549_Myers.88391	0	.	29645729	29648058	0	1	2329	0
chr20	29645805	29646843	melanoma_Garraway_short_term_cultures.69669	0	.	29645805	29646843	0	1	1038	0
chr20	29645856	29646188	ZR751_Thompson.24320	0	.	29645856	29646188	0	1	332	0
chr20	29645866	29647688	MIP101.69799	0	.	29645866	29647688	0	1	1822	0
chr20	29646034	29648028	HeLa_polyA+_Chen.35828	0	.	29646034	29648028	0	1	1994	0
chr20	29647484	29647927	MCF7_Burge_Thompson.32032	0	.	29647484	29647927	0	1	443	0
chr20	29648071	29651151	REMC_MyoepithelialBreast.91998	0	.	29648071	29651151	0	1	3080	0
chr20	29649795	29650617	HepG2_Caltech_ENCODE.38749	0	.	29649795	29650617	0	1	822	0
chr20	29649969	29650958	H1_polyA+.116041	0	.	29649969	29650958	0	1	989	0
chr20	29663902	29664694	REMC_MyoepithelialBreast.91874	0	.	29663902	29664694	0	1	792	0
chr20	29684060	29685059	A549_Myers.88404	0	.	29684060	29685059	0	1	999	0
chr20	29684320	29685192	B_Cells_Pritchard.3219187	0	.	29684320	29685192	0	1	872	0
chr20	29684941	29685369	BT474_Burge_Thompson.34969	0	.	29684941	29685369	0	1	428	0
chr20	29697919	29699647	REMC_MyoepithelialBreast.91911	0	.	29697919	29699647	0	1	1728	0
chr20	29697930	29699912	REMC_LuminalBreast.98737	0	.	29697930	29699912	0	1	1982	0
chr20	29698347	29700034	REMC_BreastStem.49557	0	.	29698347	29700034	0	1	1687	0
chr20	29700077	29707502	REMC_LuminalBreast.98738	0	.	29700077	29707502	0	1	7425	0
chr20	29700786	29701940	REMC_MyoepithelialBreast.91912	0	.	29700786	29701940	0	1	1154	0
chr20	29702996	29705873	REMC_MyoepithelialBreast.91913	0	.	29702996	29705873	0	1	2877	0
chr20	29704489	29706716	REMC_BreastStem.49561	0	.	29704489	29706716	0	1	2227	0
chr20	29706022	29706704	REMC_MyoepithelialBreast.91914	0	.	29706022	29706704	0	1	682	0
chr20	29710634	29714656	REMC_LuminalBreast.98740	0	.	29710634	29714656	0	1	4022	0
chr20	29711748	29714529	REMC_MyoepithelialBreast.91919	0	.	29711748	29714529	0	1	2781	0
chr20	29712076	29714486	REMC_BreastStem.49563	0	.	29712076	29714486	0	1	2410	0
chr20	29713090	29713416	A549_Myers.88406	0	.	29713090	29713416	0	1	326	0
chr20	29857825	29858241	B_cells_Cheung.196332	0	.	29857825	29858241	0	1	416	0
chr20	29862439	29864914	H1_polyA+.116293	0	.	29862439	29864914	0	1	2475	0
chr20	29862829	29863797	melanoma_Garraway_short_term_cultures.69706	0	.	29862829	29863797	0	1	968	0
chr20	29866429	29867682	MIP101.69860	0	.	29866429	29867682	0	1	1253	0
chr20	29887527	29887889	A549_Myers.88478	0	.	29887527	29887889	0	1	362	0
chr20	29892421	29892737	A549_Myers.88481	0	.	29892421	29892737	0	1	316	0
chr20	30088980	30089729	MIP101.69812	0	.	30088980	30089729	0	1	749	0
chr20	30089260	30089784	prostate_normal.59780	0	.	30089260	30089784	0	1	524	0
chr20	30089378	30089977	H9_polyA+.45868	0	.	30089378	30089977	0	1	599	0
chr20	30097872	30098381	H1_polyA+.116050	0	.	30097872	30098381	0	1	509	0
chr20	30100460	30101449	H1_polyA+.116052	0	.	30100460	30101449	0	1	989	0
chr20	30232428	30237649	REMC_LuminalBreast.98771	0	.	30232428	30237649	0	1	5221	0
chr20	30232459	30236967	REMC_MyoepithelialBreast.91951	0	.	30232459	30236967	0	1	4508	0
chr20	30234633	30236190	H1_polyA+.116064	0	.	30234633	30236190	0	1	1557	0
chr20	30237944	30238639	CD4_Plagnol_activated.65648	0	.	30237944	30238639	0	1	695	0
chr20	30237948	30238797	MCF7_Burge_Thompson.32058	0	.	30237948	30238797	0	1	849	0
chr20	30237960	30238315	HepG2_Caltech_ENCODE.38795	0	.	30237960	30238315	0	1	355	0
chr20	30237973	30238676	melanoma_Garraway_short_term_cultures.69736	0	.	30237973	30238676	0	1	703	0
chr20	30241853	30242964	HeLa_polyA+_Chen.35812	0	.	30241853	30242964	0	1	1111	0
chr20	30294311	30296622	REMC_LuminalBreast.98782	0	.	30294311	30296622	0	1	2311	0
chr20	30388133	30398728	prostate_carcinoma.99947	0	-	30388133	30398728	0	2	723,158	0,10437
chr20	30388151	30388773	H1_polyA+.116084	0	.	30388151	30388773	0	1	622	0
chr20	30388222	30389037	REMC_MyoepithelialBreast.92846	0	.	30388222	30389037	0	1	815	0
chr20	30388327	30388905	CD4_Plagnol_activated.65699	0	.	30388327	30388905	0	1	578	0
chr20	30388329	30388729	B_Cells_Pritchard.3221873	0	-	30388329	30388729	0	1	400	0
chr20	30388365	30389916	REMC_LuminalBreast.99156	0	.	30388365	30389916	0	1	1551	0
chr20	30388371	30388885	CD4_Plagnol_resting.63719	0	.	30388371	30388885	0	1	514	0
chr20	30389111	30389943	brain_AmbionMAQC.45285	0	.	30389111	30389943	0	1	832	0
chr20	30389197	30390828	REMC_MyoepithelialBreast.92847	0	.	30389197	30390828	0	1	1631	0
chr20	30389374	30390098	melanoma_Garraway_short_term_cultures.69769	0	.	30389374	30390098	0	1	724	0
chr20	30389469	30390112	H1_polyA+.116085	0	.	30389469	30390112	0	1	643	0
chr20	30394548	30395511	B_Cells_Pritchard.3220719	0	.	30394548	30395511	0	1	963	0
chr20	30394863	30395508	REMC_MyoepithelialBreast.92852	0	.	30394863	30395508	0	1	645	0
chr20	30395789	30398119	B_cells_Cheung.196720	0	.	30395789	30398119	0	1	2330	0
chr20	30661555	30662794	K562.45873	0	.	30661555	30662794	0	1	1239	0
chr20	30662898	30665615	K562.45874	0	.	30662898	30665615	0	1	2717	0
chr20	30669961	30670595	K562.45879	0	.	30669961	30670595	0	1	634	0
chr20	30672692	30674701	K562.45882	0	.	30672692	30674701	0	1	2009	0
chr20	30673820	30674257	B_Cells_Pritchard.3221207	0	.	30673820	30674257	0	1	437	0
chr20	30674811	30677103	K562.45883	0	.	30674811	30677103	0	1	2292	0
chr20	30677274	30679135	K562.45884	0	.	30677274	30679135	0	1	1861	0
chr20	30679247	30682154	K562.45885	0	+	30679247	30682154	0	2	1424,1050	0,1857
chr20	30711888	30713937	H1_polyA+.116129	0	.	30711888	30713937	0	1	2049	0
chr20	30712262	30713053	REMC_LuminalBreast.98801	0	.	30712262	30713053	0	1	791	0
chr20	30715138	30716063	BT474_Burge_Thompson.35050	0	.	30715138	30716063	0	1	925	0
chr20	30715236	30717144	H1_polyA+.116130	0	.	30715236	30717144	0	1	1908	0
chr20	30716229	30716692	BT474_Burge_Thompson.35051	0	.	30716229	30716692	0	1	463	0
chr20	30720075	30721840	REMC_LuminalBreast.98802	0	.	30720075	30721840	0	1	1765	0
chr20	30720137	30721797	H1_polyA+.116133	0	.	30720137	30721797	0	1	1660	0
chr20	30723619	30724923	H1_polyA+.116134	0	.	30723619	30724923	0	1	1304	0
chr20	30724311	30725482	B_Cells_Pritchard.3221363	0	.	30724311	30725482	0	1	1171	0
chr20	30724459	30724853	BT474_Burge_Thompson.35052	0	.	30724459	30724853	0	1	394	0
chr20	30724639	30724967	A549_Myers.88584	0	.	30724639	30724967	0	1	328	0
chr20	30726440	30727467	H1_polyA+.116136	0	.	30726440	30727467	0	1	1027	0
chr20	30730394	30731667	H1_polyA+.116139	0	.	30730394	30731667	0	1	1273	0
chr20	30730448	30732885	REMC_LuminalBreast.98822	0	.	30730448	30732885	0	1	2437	0
chr20	30731721	30732962	H1_polyA+.116140	0	.	30731721	30732962	0	1	1241	0
chr20	30732639	30733181	B_Cells_Pritchard.3221391	0	.	30732639	30733181	0	1	542	0
chr20	30734029	30735504	H1_polyA+.116142	0	.	30734029	30735504	0	1	1475	0
chr20	30743122	30744960	H1_polyA+.116168	0	.	30743122	30744960	0	1	1838	0
chr20	30743132	30743487	B_cells_Cheung.196491	0	.	30743132	30743487	0	1	355	0
chr20	30744623	30746102	REMC_LuminalBreast.98854	0	.	30744623	30746102	0	1	1479	0
chr20	30746481	30750320	REMC_LuminalBreast.98855	0	.	30746481	30750320	0	1	3839	0
chr20	30747942	30748458	B_cells_Cheung.196495	0	.	30747942	30748458	0	1	516	0
chr20	30748923	30749675	B_cells_Cheung.196497	0	.	30748923	30749675	0	1	752	0
chr20	30749005	30749648	prostate_normal.59847	0	.	30749005	30749648	0	1	643	0
chr20	30749015	30749612	REMC_MyoepithelialBreast.92003	0	.	30749015	30749612	0	1	597	0
chr20	30750914	30752536	REMC_LuminalBreast.98856	0	.	30750914	30752536	0	1	1622	0
chr20	30904603	30905287	CD4_Plagnol_resting.63755	0	.	30904603	30905287	0	1	684	0
chr20	30904645	30905541	H1_rRNA-depleted_UCSD_REMC.87692	0	.	30904645	30905541	0	1	896	0
chr20	30904682	30905296	melanoma_Garraway_short_term_cultures.69832	0	.	30904682	30905296	0	1	614	0
chr20	30906255	30908349	B_cells_Cheung.196542	0	.	30906255	30908349	0	1	2094	0
chr20	30907374	30910219	H9_polyA+.45915	0	.	30907374	30910219	0	1	2845	0
chr20	30907794	30908762	H9_polyA-_Chen.14498	0	.	30907794	30908762	0	1	968	0
chr20	30908008	30908999	brain_AmbionMAQC.45311	0	.	30908008	30908999	0	1	991	0
chr20	30908408	30910275	B_cells_Cheung.196543	0	.	30908408	30910275	0	1	1867	0
chr20	30908423	30910300	melanoma_Garraway_short_term_cultures.69835	0	.	30908423	30910300	0	1	1877	0
chr20	31023923	31026623	B_Cells_Pritchard.3222505	0	+	31023923	31026623	0	2	109,2219	0,481
chr20	31024288	31026148	B_cells_Cheung.196551	0	+	31024288	31026148	0	2	476,629	0,1231
chr20	31024318	31024707	A549_Myers.88596	0	.	31024318	31024707	0	1	389	0
chr20	31184701	31185124	A549_Myers.88610	0	.	31184701	31185124	0	1	423	0
chr20	31511837	31512177	B_cells_Cheung.196587	0	.	31511837	31512177	0	1	340	0
chr20	31528958	31529767	BT474_Burge_Thompson.35089	0	.	31528958	31529767	0	1	809	0
chr20	31702633	31703313	HeLa_polyA-_Chen.18698	0	.	31702633	31703313	0	1	680	0
chr20	31702712	31703337	A549_Myers.88646	0	.	31702712	31703337	0	1	625	0
chr20	31704348	31705189	REMC_BreastStem.49630	0	.	31704348	31705189	0	1	841	0
chr20	31704503	31706890	T47D_Burge_Thompson.29460	0	.	31704503	31706890	0	1	2387	0
chr20	31704516	31706768	K562.45993	0	.	31704516	31706768	0	1	2252	0
chr20	31704523	31706941	melanoma_Garraway_short_term_cultures.69888	0	.	31704523	31706941	0	1	2418	0
chr20	31704533	31704957	CD4_Plagnol_resting.63829	0	.	31704533	31704957	0	1	424	0
chr20	31704568	31705856	REMC_MyoepithelialBreast.92050	0	.	31704568	31705856	0	1	1288	0
chr20	31704574	31705007	liver_polyA+.131687	0	.	31704574	31705007	0	1	433	0
chr20	31704583	31705062	H9_polyA+.45926	0	.	31704583	31705062	0	1	479	0
chr20	31704584	31706957	BT474_Burge_Thompson.35110	0	.	31704584	31706957	0	1	2373	0
chr20	31704700	31706956	brain_AmbionMAQC.45325	0	.	31704700	31706956	0	1	2256	0
chr20	31705116	31706689	A549_Myers.88649	0	.	31705116	31706689	0	1	1573	0
chr20	31705245	31706424	REMC_BreastStem.49631	0	.	31705245	31706424	0	1	1179	0
chr20	31706128	31706708	CD4_Plagnol_resting.63830	0	.	31706128	31706708	0	1	580	0
chr20	31706200	31706770	H1_rRNA-depleted_UCSD_REMC.87737	0	.	31706200	31706770	0	1	570	0
chr20	31706222	31706948	MDAMB231_Thompson.22406	0	.	31706222	31706948	0	1	726	0
chr20	31706228	31706613	MB435_Burge.43857	0	.	31706228	31706613	0	1	385	0
chr20	31706501	31707180	REMC_MyoepithelialBreast.92051	0	.	31706501	31707180	0	1	679	0
chr20	31745454	31746300	B_Cells_Pritchard.3224559	0	.	31745454	31746300	0	1	846	0
chr20	31745637	31746437	brain_AmbionMAQC.45330	0	.	31745637	31746437	0	1	800	0
chr20	31849824	31851607	REMC_BreastStem.49768	0	.	31849824	31851607	0	1	1783	0
chr20	31853050	31854751	REMC_BreastStem.49770	0	.	31853050	31854751	0	1	1701	0
chr20	31907173	31907834	B_Cells_Pritchard.3224961	0	.	31907173	31907834	0	1	661	0
chr20	31908940	31911766	REMC_MyoepithelialBreast.92146	0	.	31908940	31911766	0	1	2826	0
chr20	31909124	31909765	B_cells_Cheung.196696	0	.	31909124	31909765	0	1	641	0
chr20	31912140	31913396	REMC_BreastStem.49774	0	.	31912140	31913396	0	1	1256	0
chr20	31912142	31913724	REMC_LuminalBreast.98962	0	.	31912142	31913724	0	1	1582	0
chr20	31914179	31914724	A549_Myers.88694	0	.	31914179	31914724	0	1	545	0
chr20	31914495	31915461	REMC_LuminalBreast.98963	0	.	31914495	31915461	0	1	966	0
chr20	31914814	31916411	REMC_MyoepithelialBreast.92148	0	.	31914814	31916411	0	1	1597	0
chr20	31916578	31917977	REMC_MyoepithelialBreast.92149	0	.	31916578	31917977	0	1	1399	0
chr20	31918286	31919754	REMC_LuminalBreast.98964	0	.	31918286	31919754	0	1	1468	0
chr20	31918595	31920887	REMC_MyoepithelialBreast.92150	0	.	31918595	31920887	0	1	2292	0
chr20	31922330	31922712	B_Cells_Pritchard.3225029	0	.	31922330	31922712	0	1	382	0
chr20	31926796	31927761	REMC_MyoepithelialBreast.92151	0	.	31926796	31927761	0	1	965	0
chr20	31947152	31947790	B_Cells_Pritchard.3225135	0	.	31947152	31947790	0	1	638	0
chr20	32032141	32032792	prostate_carcinoma.100184	0	.	32032141	32032792	0	1	651	0
chr20	32035222	32036255	B_cells_Cheung.196703	0	.	32035222	32036255	0	1	1033	0
chr20	32035455	32036175	prostate_carcinoma.100187	0	.	32035455	32036175	0	1	720	0
chr20	32036502	32037845	prostate_normal.59940	0	.	32036502	32037845	0	1	1343	0
chr20	32036522	32036994	K562.45968	0	.	32036522	32036994	0	1	472	0
chr20	32036622	32037530	BT20_Thompson.22381	0	.	32036622	32037530	0	1	908	0
chr20	32036799	32044700	REMC_LuminalBreast.99065	0	-	32036799	32044700	0	1	7901	0
chr20	32036899	32039444	MCF7_Burge_Thompson.32126	0	.	32036899	32039444	0	1	2545	0
chr20	32036990	32044753	HepG2_Caltech_ENCODE.38918	0	-	32036990	32044753	0	2	7382,227	0,7536
chr20	32037083	32040456	HIT000043721	0	-	32037083	32040456	0	1	3373	0
chr20	32037134	32037740	K562.45969	0	.	32037134	32037740	0	1	606	0
chr20	32037138	32037650	brain_AmbionMAQC.45351	0	.	32037138	32037650	0	1	512	0
chr20	32037179	32037979	T47D_Burge_Thompson.29492	0	.	32037179	32037979	0	1	800	0
chr20	32037239	32038043	ZR751_Thompson.24390	0	.	32037239	32038043	0	1	804	0
chr20	32037406	32037849	melanoma_Garraway_short_term_cultures.69924	0	.	32037406	32037849	0	1	443	0
chr20	32037997	32042769	prostate_carcinoma.100188	0	.	32037997	32042769	0	1	4772	0
chr20	32038113	32041937	MIP101.70022	0	.	32038113	32041937	0	1	3824	0
chr20	32039229	32044586	BT20_Thompson.22385	0	-	32039229	32044586	0	2	2536,1753	0,3604
chr20	32039229	32042646	BT20_Thompson.22386	0	.	32039229	32042646	0	1	3417	0
chr20	32039518	32040803	T47D_Burge_Thompson.29493	0	.	32039518	32040803	0	1	1285	0
chr20	32039578	32042324	melanoma_Garraway_short_term_cultures.69926	0	.	32039578	32042324	0	1	2746	0
chr20	32039602	32042374	MCF7_Burge_Thompson.32127	0	.	32039602	32042374	0	1	2772	0
chr20	32039708	32041845	prostate_normal.59943	0	.	32039708	32041845	0	1	2137	0
chr20	32039840	32044703	REMC_MyoepithelialBreast.92089	0	-	32039840	32044703	0	2	1640,1844	0,3019
chr20	32042847	32043737	MCF7_Burge_Thompson.32128	0	.	32042847	32043737	0	1	890	0
chr20	32042869	32043665	T47D_Burge_Thompson.29495	0	.	32042869	32043665	0	1	796	0
chr20	32042911	32043690	prostate_normal.59944	0	.	32042911	32043690	0	1	779	0
chr20	32043230	32043722	melanoma_Garraway_short_term_cultures.69927	0	.	32043230	32043722	0	1	492	0
chr20	32043280	32043741	MDAMB231_Thompson.22421	0	.	32043280	32043741	0	1	461	0
chr20	32043283	32043664	A549_Myers.88704	0	.	32043283	32043664	0	1	381	0
chr20	32043307	32043715	CD4_Snyder.74620	0	.	32043307	32043715	0	1	408	0
chr20	32178926	32183347	REMC_BreastStem.49693	0	.	32178926	32183347	0	1	4421	0
chr20	32178926	32183511	REMC_MyoepithelialBreast.92244	0	.	32178926	32183511	0	1	4585	0
chr20	32179206	32183730	REMC_LuminalBreast.98973	0	.	32179206	32183730	0	1	4524	0
chr20	32184934	32188856	REMC_BreastStem.49694	0	.	32184934	32188856	0	1	3922	0
chr20	32184944	32188725	REMC_MyoepithelialBreast.92246	0	.	32184944	32188725	0	1	3781	0
chr20	32184951	32191593	REMC_LuminalBreast.98975	0	.	32184951	32191593	0	1	6642	0
chr20	32185751	32186179	melanoma_Garraway_short_term_cultures.69952	0	.	32185751	32186179	0	1	428	0
chr20	32186629	32187626	HepG2_Caltech_ENCODE.38932	0	.	32186629	32187626	0	1	997	0
chr20	32203321	32205067	REMC_LuminalBreast.98983	0	.	32203321	32205067	0	1	1746	0
chr20	32203950	32204824	REMC_MyoepithelialBreast.92103	0	.	32203950	32204824	0	1	874	0
chr20	32204040	32204768	REMC_BreastStem.49698	0	.	32204040	32204768	0	1	728	0
chr20	32208387	32209769	REMC_BreastStem.49699	0	.	32208387	32209769	0	1	1382	0
chr20	32208805	32209766	REMC_MyoepithelialBreast.92104	0	.	32208805	32209766	0	1	961	0
chr20	32242141	32242496	A549_Myers.88715	0	.	32242141	32242496	0	1	355	0
chr20	32321826	32322445	A549_Myers.88872	0	.	32321826	32322445	0	1	619	0
chr20	32323250	32326758	B_cells_Cheung.196771	0	.	32323250	32326758	0	1	3508	0
chr20	32323477	32326611	melanoma_Garraway_short_term_cultures.69979	0	.	32323477	32326611	0	1	3134	0
chr20	32323491	32326767	HeLa_polyA+_Chen.35986	0	.	32323491	32326767	0	1	3276	0
chr20	32323605	32329102	REMC_BreastStem.49718	0	.	32323605	32329102	0	1	5497	0
chr20	32324211	32326616	CD4_Plagnol_activated.65845	0	.	32324211	32326616	0	1	2405	0
chr20	32324282	32326172	MCF7_Burge_Thompson.32156	0	.	32324282	32326172	0	1	1890	0
chr20	32324359	32326726	MDAMB468_Thompson.24875	0	.	32324359	32326726	0	1	2367	0
chr20	32324359	32325435	MCF10A_Thompson.21721	0	.	32324359	32325435	0	1	1076	0
chr20	32324359	32326630	ZR751_Thompson.24409	0	.	32324359	32326630	0	1	2271	0
chr20	32324388	32326739	BT20_Thompson.22415	0	.	32324388	32326739	0	1	2351	0
chr20	32324427	32326173	H9_polyA+.45993	0	.	32324427	32326173	0	1	1746	0
chr20	32326846	32329076	HeLa_polyA+_Chen.35984	0	.	32326846	32329076	0	1	2230	0
chr20	32326856	32328977	BT20_Thompson.22416	0	.	32326856	32328977	0	1	2121	0
chr20	32326859	32328935	MDAMB468_Thompson.24876	0	.	32326859	32328935	0	1	2076	0
chr20	32326877	32328984	ZR751_Thompson.24410	0	.	32326877	32328984	0	1	2107	0
chr20	32327437	32328974	CD4_Plagnol_activated.65847	0	.	32327437	32328974	0	1	1537	0
chr20	32327445	32328957	MCF7_Burge_Thompson.32158	0	.	32327445	32328957	0	1	1512	0
chr20	32327450	32328843	MDAMB231_Thompson.22462	0	.	32327450	32328843	0	1	1393	0
chr20	32327572	32328627	K562.46041	0	.	32327572	32328627	0	1	1055	0
chr20	32327579	32328328	HeLa_polyA-_Chen.18730	0	.	32327579	32328328	0	1	749	0
chr20	32327757	32328958	liver_polyA+.131811	0	.	32327757	32328958	0	1	1201	0
chr20	32328181	32328907	MCF10A_Thompson.21722	0	.	32328181	32328907	0	1	726	0
chr20	32328226	32329063	H1_rRNA-depleted_UCSD_REMC.87834	0	.	32328226	32329063	0	1	837	0
chr20	32406969	32407586	BT474_Burge_Thompson.35140	0	.	32406969	32407586	0	1	617	0
chr20	32593600	32595358	REMC_LuminalBreast.99023	0	.	32593600	32595358	0	1	1758	0
chr20	32593620	32594138	B_Cells_Pritchard.3226227	0	+	32593620	32594138	0	1	518	0
chr20	32730583	32731655	B_cells_Cheung.196952	0	.	32730583	32731655	0	1	1072	0
chr20	32730860	32732645	HIT000011520	0	-	32730860	32732645	0	1	1785	0
chr20	32731804	32732761	B_cells_Cheung.196953	0	.	32731804	32732761	0	1	957	0
chr20	32887917	32894255	REMC_MyoepithelialBreast.92230	0	.	32887917	32894255	0	1	6338	0
chr20	32891267	32894201	REMC_BreastStem.49782	0	.	32891267	32894201	0	1	2934	0
chr20	33164590	33165451	B_Cells_Pritchard.3227461	0	.	33164590	33165451	0	1	861	0
chr20	33482654	33483389	BT474_Burge_Thompson.35235	0	.	33482654	33483389	0	1	735	0
chr20	33564768	33568884	melanoma_Garraway_short_term_cultures.70172	0	.	33564768	33568884	0	1	4116	0
chr20	33564770	33568889	B_Cells_Pritchard.3228377	0	.	33564770	33568889	0	1	4119	0
chr20	33564794	33569362	REMC_MyoepithelialBreast.92366	0	.	33564794	33569362	0	1	4568	0
chr20	33564801	33568833	MCF10A_Thompson.21761	0	.	33564801	33568833	0	1	4032	0
chr20	33564818	33566869	K562.46089	0	.	33564818	33566869	0	1	2051	0
chr20	33564870	33568888	CD4_Plagnol_activated.66005	0	.	33564870	33568888	0	1	4018	0
chr20	33564905	33568854	T47D_Burge_Thompson.29580	0	.	33564905	33568854	0	1	3949	0
chr20	33564913	33565637	H9_polyA+.46047	0	.	33564913	33565637	0	1	724	0
chr20	33565051	33568876	CD4_Plagnol_resting.64116	0	.	33565051	33568876	0	1	3825	0
chr20	33565057	33568981	brain_AmbionMAQC.45519	0	.	33565057	33568981	0	1	3924	0
chr20	33565111	33567212	ZR751_Thompson.24457	0	.	33565111	33567212	0	1	2101	0
chr20	33565308	33568882	REMC_BreastStem.49843	0	.	33565308	33568882	0	1	3574	0
chr20	33565388	33566785	MCF7_Burge_Thompson.32217	0	.	33565388	33566785	0	1	1397	0
chr20	33565489	33567015	MDAMB468_Thompson.24919	0	.	33565489	33567015	0	1	1526	0
chr20	33565581	33566825	pHIT000094820	0	-	33565581	33566825	0	3	91,160,172	0,688,1072
chr20	33565581	33567029	pHIT000035487	0	-	33565581	33567029	0	3	91,160,118	0,688,1330
chr20	33565650	33566639	MDAMB231_Thompson.22544	0	.	33565650	33566639	0	1	989	0
chr20	33565689	33568953	H9_polyA+.46048	0	.	33565689	33568953	0	1	3264	0
chr20	34085388	34087814	REMC_BreastStem.49953	0	.	34085388	34087814	0	1	2426	0
chr20	34085390	34087825	REMC_MyoepithelialBreast.92517	0	.	34085390	34087825	0	1	2435	0
chr20	34085391	34087524	REMC_LuminalBreast.99416	0	.	34085391	34087524	0	1	2133	0
chr20	34091238	34093643	REMC_LuminalBreast.99419	0	.	34091238	34093643	0	1	2405	0
chr20	34091348	34100462	REMC_MyoepithelialBreast.92520	0	.	34091348	34100462	0	1	9114	0
chr20	34091372	34094482	REMC_BreastStem.49950	0	.	34091372	34094482	0	1	3110	0
chr20	34091906	34092355	melanoma_Garraway_short_term_cultures.70244	0	.	34091906	34092355	0	1	449	0
chr20	34092529	34093655	melanoma_Garraway_short_term_cultures.70245	0	.	34092529	34093655	0	1	1126	0
chr20	34096953	34102296	NR_027451	0	-	34096953	34102296	0	1	5343	0
chr20	34096956	34102296	XR_079564	0	-	34096956	34102296	0	1	5340	0
chr20	34096976	34102330	K562.46132	0	.	34096976	34102330	0	1	5354	0
chr20	34098112	34102330	CD4_Plagnol_resting.64169	0	+	34098112	34102330	0	2	281,500	0,3718
chr20	34098137	34111166	B_Cells_Pritchard.3229259	0	+	34098137	34111166	0	7	259,278,201,246,684,10,23	0,279,676,1165,3517,7130,13006
chr20	34098179	34102296	XR_079547	0	-	34098179	34102296	0	2	19,4097	0,20
chr20	34100091	34102296	HIT000015508	0	-	34100091	34102296	0	1	2205	0
chr20	34100825	34102205	A549_Myers.88906	0	+	34100825	34102205	0	2	80,366	0,1014
chr20	34101043	34102283	HIT000087667	0	-	34101043	34102283	0	1	1240	0
chr20	34101052	34102296	HIT000092325	0	-	34101052	34102296	0	2	1134,49	0,1195
chr20	34101074	34102279	HIT000291216	0	-	34101074	34102279	0	1	1205	0
chr20	34101225	34102384	REMC_LuminalBreast.99422	0	.	34101225	34102384	0	1	1159	0
chr20	34101231	34102331	REMC_MyoepithelialBreast.92522	0	.	34101231	34102331	0	1	1100	0
chr20	34101577	34102295	REMC_BreastStem.49961	0	.	34101577	34102295	0	1	718	0
chr20	34101585	34102395	B_cells_Cheung.197417	0	.	34101585	34102395	0	1	810	0
chr20	34101585	34102332	ZR751_Thompson.24493	0	.	34101585	34102332	0	1	747	0
chr20	34101629	34102334	HeLa_polyA+_Chen.36091	0	.	34101629	34102334	0	1	705	0
chr20	34101636	34102313	H9_polyA+.46106	0	.	34101636	34102313	0	1	677	0
chr20	34101647	34102339	T47D_Burge_Thompson.29644	0	.	34101647	34102339	0	1	692	0
chr20	34101648	34102337	MCF10A_Thompson.21792	0	.	34101648	34102337	0	1	689	0
chr20	34101648	34102304	MDAMB468_Thompson.24973	0	.	34101648	34102304	0	1	656	0
chr20	34101649	34102313	BT474_Burge_Thompson.35328	0	.	34101649	34102313	0	1	664	0
chr20	34101655	34102330	MDAMB231_Thompson.22534	0	.	34101655	34102330	0	1	675	0
chr20	34101656	34102327	brain_AmbionMAQC.45510	0	.	34101656	34102327	0	1	671	0
chr20	34101666	34102332	MCF7_Burge_Thompson.32243	0	.	34101666	34102332	0	1	666	0
chr20	34101669	34102369	BT20_Thompson.22503	0	.	34101669	34102369	0	1	700	0
chr20	34101708	34102142	MeWo_Garraway.37143	0	.	34101708	34102142	0	1	434	0
chr20	34101727	34102054	pHIT000035544	0	-	34101727	34102054	0	1	327	0
chr20	34101790	34118888	MCF7_Burge_Thompson.32242	0	+	34101790	34118888	0	2	311,47	0,17051
chr20	34101808	34102283	HeLa_polyA-_Chen.18812	0	.	34101808	34102283	0	1	475	0
chr20	34101808	34102320	melanoma_Garraway_short_term_cultures.70255	0	.	34101808	34102320	0	1	512	0
chr20	34101821	34102208	breast_Burge.40997	0	.	34101821	34102208	0	1	387	0
chr20	34101823	34102309	HME_Burge.41330	0	.	34101823	34102309	0	1	486	0
chr20	34101826	34102182	MB435_Burge.44164	0	.	34101826	34102182	0	1	356	0
chr20	34101829	34102308	H9_polyA-_Chen.14579	0	.	34101829	34102308	0	1	479	0
chr20	34101841	34102265	colon_Burge.38415	0	.	34101841	34102265	0	1	424	0
chr20	34101842	34102273	adipose_Burge.39271	0	.	34101842	34102273	0	1	431	0
chr20	34101853	34102188	HeLa_Bartel_WT_12hr.32615	0	.	34101853	34102188	0	1	335	0
chr20	34101869	34102202	CD4_Plagnol_activated.66039	0	.	34101869	34102202	0	1	333	0
chr20	34101881	34102279	heart_Burge.28986	0	.	34101881	34102279	0	1	398	0
chr20	34101884	34102207	H1_rRNA-depleted_UCSD_REMC.88158	0	.	34101884	34102207	0	1	323	0
chr20	34101903	34102209	testes_Burge.53897	0	.	34101903	34102209	0	1	306	0
chr20	34105078	34105447	B_cells_Cheung.197418	0	.	34105078	34105447	0	1	369	0
chr20	34110361	34111544	B_Cells_Pritchard.3229395	0	-	34110361	34111544	0	2	682,72	0,1111
chr20	34115619	34121118	A549_Myers.88912	0	+	34115619	34121118	0	4	1109,53,55,100	0,1966,3661,5399
chr20	34115896	34117202	A549_Myers.88913	0	.	34115896	34117202	0	1	1306	0
chr20	34286201	34286676	prostate_carcinoma.100607	0	.	34286201	34286676	0	1	475	0
chr20	34322650	34323436	H1_polyA+.116768	0	.	34322650	34323436	0	1	786	0
chr20	34322679	34323189	A549_Myers.88953	0	.	34322679	34323189	0	1	510	0
chr20	34323055	34325723	REMC_LuminalBreast.99438	0	.	34323055	34325723	0	1	2668	0
chr20	34324450	34326072	REMC_MyoepithelialBreast.92532	0	.	34324450	34326072	0	1	1622	0
chr20	34324758	34325766	REMC_BreastStem.49976	0	.	34324758	34325766	0	1	1008	0
chr20	34326114	34329158	REMC_LuminalBreast.99439	0	.	34326114	34329158	0	1	3044	0
chr20	34328289	34328827	B_cells_Cheung.197447	0	.	34328289	34328827	0	1	538	0
chr20	34333219	34333925	REMC_LuminalBreast.99443	0	.	34333219	34333925	0	1	706	0
chr20	34333273	34333603	B_Cells_Pritchard.3230163	0	.	34333273	34333603	0	1	330	0
chr20	34334036	34336040	REMC_LuminalBreast.99444	0	.	34334036	34336040	0	1	2004	0
chr20	34336188	34337701	REMC_LuminalBreast.99445	0	.	34336188	34337701	0	1	1513	0
chr20	34348353	34351418	REMC_LuminalBreast.99452	0	.	34348353	34351418	0	1	3065	0
chr20	34352632	34354072	H1_polyA+.116770	0	.	34352632	34354072	0	1	1440	0
chr20	34591692	34592327	melanoma_Garraway_short_term_cultures.70263	0	.	34591692	34592327	0	1	635	0
chr20	34591704	34592284	H9_polyA+.46138	0	.	34591704	34592284	0	1	580	0
chr20	34592547	34594007	REMC_LuminalBreast.99466	0	.	34592547	34594007	0	1	1460	0
chr20	34593122	34593947	REMC_BreastStem.50007	0	.	34593122	34593947	0	1	825	0
chr20	34593138	34593997	B_cells_Cheung.198811	0	.	34593138	34593997	0	1	859	0
chr20	34593157	34594027	REMC_MyoepithelialBreast.92555	0	.	34593157	34594027	0	1	870	0
chr20	34593174	34594010	H1_polyA+.116902	0	.	34593174	34594010	0	1	836	0
chr20	34593176	34593941	melanoma_Garraway_short_term_cultures.70264	0	.	34593176	34593941	0	1	765	0
chr20	34594097	34597055	REMC_MyoepithelialBreast.92556	0	.	34594097	34597055	0	1	2958	0
chr20	34594193	34597071	REMC_LuminalBreast.99467	0	.	34594193	34597071	0	1	2878	0
chr20	34594235	34597066	REMC_BreastStem.50008	0	.	34594235	34597066	0	1	2831	0
chr20	34595831	34597033	H1_polyA+.116904	0	.	34595831	34597033	0	1	1202	0
chr20	34596079	34597048	B_cells_Cheung.198814	0	.	34596079	34597048	0	1	969	0
chr20	34596135	34597020	B_Cells_Pritchard.3230885	0	-	34596135	34597020	0	1	885	0
chr20	34597955	34600774	REMC_LuminalBreast.99468	0	.	34597955	34600774	0	1	2819	0
chr20	34598134	34599367	B_cells_Cheung.198815	0	.	34598134	34599367	0	1	1233	0
chr20	34598285	34599945	H1_polyA+.116906	0	.	34598285	34599945	0	1	1660	0
chr20	34611786	34612350	IMR90_UCSD_REMC.50019	0	-	34611786	34612350	0	1	564	0
chr20	34612819	34613250	heart_Burge.29013	0	.	34612819	34613250	0	1	431	0
chr20	34612847	34613241	breast_Burge.41250	0	.	34612847	34613241	0	1	394	0
chr20	34616354	34617562	REMC_LuminalBreast.99473	0	.	34616354	34617562	0	1	1208	0
chr20	34616359	34617525	B_cells_Cheung.198827	0	.	34616359	34617525	0	1	1166	0
chr20	34616455	34617543	H1_polyA+.116915	0	.	34616455	34617543	0	1	1088	0
chr20	34616760	34617443	B_Cells_Pritchard.3230921	0	.	34616760	34617443	0	1	683	0
chr20	34617634	34620791	H1_polyA+.116916	0	.	34617634	34620791	0	1	3157	0
chr20	34617641	34620784	REMC_MyoepithelialBreast.92609	0	.	34617641	34620784	0	1	3143	0
chr20	34617662	34619110	B_cells_Cheung.198828	0	.	34617662	34619110	0	1	1448	0
chr20	34617990	34618529	REMC_LuminalBreast.99474	0	.	34617990	34618529	0	1	539	0
chr20	34620949	34621333	B_Cells_Pritchard.3230939	0	.	34620949	34621333	0	1	384	0
chr20	34620964	34621496	REMC_BreastStem.50084	0	.	34620964	34621496	0	1	532	0
chr20	34620985	34621710	B_cells_Cheung.198830	0	.	34620985	34621710	0	1	725	0
chr20	34621019	34621738	REMC_LuminalBreast.99476	0	.	34621019	34621738	0	1	719	0
chr20	34621843	34623068	REMC_MyoepithelialBreast.92610	0	.	34621843	34623068	0	1	1225	0
chr20	34626555	34627895	REMC_MyoepithelialBreast.92612	0	.	34626555	34627895	0	1	1340	0
chr20	34626715	34628217	B_cells_Cheung.198832	0	.	34626715	34628217	0	2	635,777	0,725
chr20	34626885	34632982	B_Cells_Pritchard.3232637	0	+	34626885	34632982	0	3	61,892,444	0,4382,5653
chr20	34629000	34632152	B_cells_Cheung.198833	0	.	34629000	34632152	0	4	643,915,482,911	0,709,1691,2241
chr20	34630702	34632158	H1_polyA+.116919	0	.	34630702	34632158	0	1	1456	0
chr20	34633522	34633897	B_Cells_Pritchard.3232667	0	+	34633522	34633897	0	1	375	0
chr20	34810887	34811820	B_cells_Cheung.197553	0	.	34810887	34811820	0	1	933	0
chr20	34810952	34811767	H1_polyA+.116784	0	.	34810952	34811767	0	1	815	0
chr20	35054503	35055438	H1_polyA+.116824	0	.	35054503	35055438	0	1	935	0
chr20	35055973	35057450	H1_polyA+.116825	0	.	35055973	35057450	0	1	1477	0
chr20	35056142	35056562	B_cells_Cheung.197644	0	.	35056142	35056562	0	1	420	0
chr20	35305026	35306048	A549_Myers.89064	0	.	35305026	35306048	0	1	1022	0
chr20	35305266	35306270	CD4_Plagnol_activated.66141	0	.	35305266	35306270	0	1	1004	0
chr20	35307518	35308267	B_cells_Cheung.197744	0	.	35307518	35308267	0	1	749	0
chr20	35309918	35310949	REMC_BreastStem.50256	0	.	35309918	35310949	0	1	1031	0
chr20	35309938	35310897	REMC_LuminalBreast.99638	0	.	35309938	35310897	0	1	959	0
chr20	35309967	35310880	REMC_MyoepithelialBreast.92616	0	.	35309967	35310880	0	1	913	0
chr20	35310068	35310809	B_Cells_Pritchard.3233109	0	+	35310068	35310809	0	1	741	0
chr20	35338455	35339274	B_cells_Cheung.197748	0	.	35338455	35339274	0	1	819	0
chr20	35338492	35338985	B_Cells_Pritchard.3232439	0	-	35338492	35338985	0	1	493	0
chr20	35389200	35389788	B_cells_Cheung.197758	0	.	35389200	35389788	0	1	588	0
chr20	35399141	35400055	H1_polyA+.116939	0	.	35399141	35400055	0	1	914	0
chr20	35399270	35400022	B_cells_Cheung.197761	0	.	35399270	35400022	0	1	752	0
chr20	35400101	35400588	B_cells_Cheung.197762	0	.	35400101	35400588	0	1	487	0
chr20	35401984	35402774	H1_polyA+.116942	0	.	35401984	35402774	0	1	790	0
chr20	35401995	35402810	prostate_carcinoma.100663	0	.	35401995	35402810	0	1	815	0
chr20	35402962	35404052	H1_polyA+.116943	0	.	35402962	35404052	0	1	1090	0
chr20	35404415	35404949	A549_Myers.89081	0	.	35404415	35404949	0	1	534	0
chr20	35468526	35469086	B_cells_Cheung.197803	0	.	35468526	35469086	0	1	560	0
chr20	35469120	35470648	REMC_LuminalBreast.99606	0	.	35469120	35470648	0	1	1528	0
chr20	35469152	35470009	B_cells_Cheung.197804	0	.	35469152	35470009	0	1	857	0
chr20	35469154	35472204	REMC_BreastStem.50102	0	.	35469154	35472204	0	1	3050	0
chr20	35469180	35470009	H1_polyA+.116956	0	.	35469180	35470009	0	1	829	0
chr20	35469454	35469934	HepG2_Caltech_ENCODE.39161	0	.	35469454	35469934	0	1	480	0
chr20	35469550	35469936	brain_AmbionMAQC.45579	0	.	35469550	35469936	0	1	386	0
chr20	35470007	35471402	HepG2_Caltech_ENCODE.39162	0	.	35470007	35471402	0	1	1395	0
chr20	35470068	35470942	B_cells_Cheung.197805	0	.	35470068	35470942	0	1	874	0
chr20	35470092	35471421	H1_polyA+.116957	0	.	35470092	35471421	0	1	1329	0
chr20	35470111	35471131	prostate_normal.60284	0	.	35470111	35471131	0	1	1020	0
chr20	35470717	35473406	REMC_LuminalBreast.99607	0	.	35470717	35473406	0	1	2689	0
chr20	35470788	35471328	brain_AmbionMAQC.45580	0	.	35470788	35471328	0	1	540	0
chr20	35471065	35471452	B_cells_Cheung.197806	0	.	35471065	35471452	0	1	387	0
chr20	35472024	35472339	B_cells_Cheung.197808	0	.	35472024	35472339	0	1	315	0
chr20	35472037	35476171	prostate_carcinoma.100683	0	+	35472037	35476171	0	2	325,710	0,3424
chr20	35472593	35473051	brain_AmbionMAQC.45581	0	.	35472593	35473051	0	1	458	0
chr20	35472596	35473539	B_cells_Cheung.197809	0	.	35472596	35473539	0	1	943	0
chr20	35472903	35473460	A549_Myers.89094	0	.	35472903	35473460	0	1	557	0
chr20	35473046	35473565	H1_polyA+.116958	0	.	35473046	35473565	0	1	519	0
chr20	35473203	35473672	prostate_normal.60285	0	.	35473203	35473672	0	1	469	0
chr20	35473563	35475344	REMC_LuminalBreast.99608	0	.	35473563	35475344	0	1	1781	0
chr20	35473742	35474330	REMC_MyoepithelialBreast.92646	0	.	35473742	35474330	0	1	588	0
chr20	35473781	35474378	H1_polyA+.116959	0	.	35473781	35474378	0	1	597	0
chr20	35473821	35474393	B_cells_Cheung.197810	0	.	35473821	35474393	0	1	572	0
chr20	35474226	35475419	REMC_BreastStem.50103	0	.	35474226	35475419	0	1	1193	0
chr20	35474403	35477301	REMC_MyoepithelialBreast.92647	0	.	35474403	35477301	0	1	2898	0
chr20	35475518	35476798	HepG2_Caltech_ENCODE.39163	0	.	35475518	35476798	0	1	1280	0
chr20	35477411	35479308	REMC_MyoepithelialBreast.92648	0	.	35477411	35479308	0	1	1897	0
chr20	35477969	35479224	REMC_BreastStem.50104	0	.	35477969	35479224	0	1	1255	0
chr20	35478259	35478972	REMC_LuminalBreast.99609	0	.	35478259	35478972	0	1	713	0
chr20	35479465	35480417	REMC_MyoepithelialBreast.92649	0	.	35479465	35480417	0	1	952	0
chr20	35479800	35480858	REMC_LuminalBreast.99610	0	.	35479800	35480858	0	1	1058	0
chr20	35479990	35482152	HepG2_Caltech_ENCODE.39164	0	.	35479990	35482152	0	1	2162	0
chr20	35480505	35482259	REMC_MyoepithelialBreast.92650	0	.	35480505	35482259	0	1	1754	0
chr20	35480960	35481852	REMC_LuminalBreast.99611	0	.	35480960	35481852	0	1	892	0
chr20	35481031	35481793	REMC_BreastStem.50105	0	.	35481031	35481793	0	1	762	0
chr20	35481904	35482459	brain_AmbionMAQC.45590	0	.	35481904	35482459	0	1	555	0
chr20	35482497	35483599	REMC_LuminalBreast.99612	0	.	35482497	35483599	0	1	1102	0
chr20	35483169	35486368	REMC_MyoepithelialBreast.92651	0	.	35483169	35486368	0	1	3199	0
chr20	35484850	35485420	A549_Myers.89096	0	.	35484850	35485420	0	1	570	0
chr20	35485795	35486154	prostate_carcinoma.100686	0	.	35485795	35486154	0	1	359	0
chr20	35487001	35488898	REMC_MyoepithelialBreast.92652	0	.	35487001	35488898	0	1	1897	0
chr20	35488094	35491298	REMC_BreastStem.50106	0	.	35488094	35491298	0	1	3204	0
chr20	35491435	35493132	REMC_MyoepithelialBreast.92654	0	.	35491435	35493132	0	1	1697	0
chr20	35494742	35495834	REMC_MyoepithelialBreast.92655	0	.	35494742	35495834	0	1	1092	0
chr20	35496337	35498056	REMC_MyoepithelialBreast.92656	0	.	35496337	35498056	0	1	1719	0
chr20	35500834	35501557	REMC_MyoepithelialBreast.92657	0	.	35500834	35501557	0	1	723	0
chr20	35500898	35501468	prostate_carcinoma.100692	0	.	35500898	35501468	0	1	570	0
chr20	35503538	35505538	REMC_MyoepithelialBreast.92658	0	.	35503538	35505538	0	1	2000	0
chr20	35510195	35511508	REMC_MyoepithelialBreast.92660	0	.	35510195	35511508	0	1	1313	0
chr20	35510825	35511568	prostate_normal.60287	0	.	35510825	35511568	0	1	743	0
chr20	35510974	35512068	REMC_BreastStem.50073	0	.	35510974	35512068	0	1	1094	0
chr20	35512223	35513560	REMC_MyoepithelialBreast.92661	0	.	35512223	35513560	0	1	1337	0
chr20	35515414	35516851	REMC_MyoepithelialBreast.92662	0	.	35515414	35516851	0	1	1437	0
chr20	35515995	35517035	REMC_BreastStem.50074	0	.	35515995	35517035	0	1	1040	0
chr20	35525352	35526214	REMC_MyoepithelialBreast.92666	0	.	35525352	35526214	0	1	862	0
chr20	35526488	35528204	REMC_MyoepithelialBreast.92667	0	.	35526488	35528204	0	1	1716	0
chr20	35530263	35531063	REMC_MyoepithelialBreast.92669	0	.	35530263	35531063	0	1	800	0
chr20	35530520	35531943	REMC_BreastStem.50076	0	.	35530520	35531943	0	1	1423	0
chr20	35532522	35534540	REMC_MyoepithelialBreast.92670	0	.	35532522	35534540	0	1	2018	0
chr20	35532522	35538112	REMC_MyoepithelialBreast.92672	0	+	35532522	35538112	0	3	1144,1163,800	0,2994,4790
chr20	35532945	35537884	REMC_BreastStem.50078	0	+	35532945	35537884	0	2	721,2756	0,2183
chr20	35532945	35534574	REMC_BreastStem.50077	0	.	35532945	35534574	0	1	1629	0
chr20	35534640	35535707	B_Cells_Pritchard.3232919	0	.	35534640	35535707	0	1	1067	0
chr20	35535469	35538112	REMC_MyoepithelialBreast.92671	0	.	35535469	35538112	0	1	2643	0
chr20	35536543	35537849	REMC_LuminalBreast.99614	0	.	35536543	35537849	0	1	1306	0
chr20	35540155	35542419	REMC_MyoepithelialBreast.92674	0	.	35540155	35542419	0	1	2264	0
chr20	35540156	35540975	B_Cells_Pritchard.3232945	0	.	35540156	35540975	0	1	819	0
chr20	35541239	35542364	B_cells_Cheung.197816	0	.	35541239	35542364	0	1	1125	0
chr20	35541278	35556423	B_Cells_Pritchard.3232949	0	-	35541278	35556423	0	2	510,2495	0,12650
chr20	35541561	35542240	prostate_carcinoma.100794	0	.	35541561	35542240	0	1	679	0
chr20	35541641	35542370	CD4_Plagnol_activated.66156	0	.	35541641	35542370	0	1	729	0
chr20	35541671	35542383	CD4_Plagnol_resting.64306	0	.	35541671	35542383	0	1	712	0
chr20	35542464	35543036	B_cells_Cheung.197817	0	.	35542464	35543036	0	1	572	0
chr20	35548285	35549062	REMC_MyoepithelialBreast.92677	0	.	35548285	35549062	0	1	777	0
chr20	35548330	35549087	B_cells_Cheung.197819	0	.	35548330	35549087	0	1	757	0
chr20	35549468	35549915	CD4_Plagnol_activated.66157	0	.	35549468	35549915	0	1	447	0
chr20	35550689	35552830	REMC_LuminalBreast.99616	0	.	35550689	35552830	0	1	2141	0
chr20	35552344	35553633	B_cells_Cheung.197822	0	.	35552344	35553633	0	1	1289	0
chr20	35553717	35556504	B_cells_Cheung.197824	0	.	35553717	35556504	0	1	2787	0
chr20	35553717	35558450	B_cells_Cheung.197823	0	-	35553717	35558450	0	2	1048,1050	0,3683
chr20	35553733	35554905	REMC_BreastStem.50079	0	.	35553733	35554905	0	1	1172	0
chr20	35553850	35555588	melanoma_Garraway_short_term_cultures.70353	0	.	35553850	35555588	0	1	1738	0
chr20	35554704	35555687	CD4_Plagnol_activated.66159	0	.	35554704	35555687	0	1	983	0
chr20	35554962	35556502	HepG2_Caltech_ENCODE.39168	0	.	35554962	35556502	0	1	1540	0
chr20	35555025	35556116	REMC_MyoepithelialBreast.94811	0	.	35555025	35556116	0	1	1091	0
chr20	35555372	35555687	liver_polyA+.132445	0	.	35555372	35555687	0	1	315	0
chr20	35557987	35560881	MIP101.70447	0	.	35557987	35560881	0	1	2894	0
chr20	35559679	35560716	prostate_normal.60292	0	.	35559679	35560716	0	1	1037	0
chr20	35934960	35935357	B_cells_Cheung.197920	0	.	35934960	35935357	0	1	397	0
chr20	35935270	35938463	H1_polyA+.117010	0	.	35935270	35938463	0	1	3193	0
chr20	35935323	35937833	REMC_MyoepithelialBreast.92699	0	.	35935323	35937833	0	1	2510	0
chr20	35944822	35948873	H1_polyA+.117011	0	-	35944822	35948873	0	2	783,1056	0,2995
chr20	35952177	35952871	H1_polyA+.117012	0	.	35952177	35952871	0	1	694	0
chr20	36025022	36027458	REMC_LuminalBreast.99630	0	.	36025022	36027458	0	1	2436	0
chr20	36025403	36026417	REMC_MyoepithelialBreast.92702	0	.	36025403	36026417	0	1	1014	0
chr20	36028330	36031467	REMC_LuminalBreast.99631	0	.	36028330	36031467	0	1	3137	0
chr20	36032451	36032904	B_cells_Cheung.197950	0	.	36032451	36032904	0	1	453	0
chr20	36034238	36035234	B_cells_Cheung.197952	0	.	36034238	36035234	0	1	996	0
chr20	36039136	36039722	melanoma_Garraway_short_term_cultures.70380	0	.	36039136	36039722	0	1	586	0
chr20	36039143	36040164	B_cells_Cheung.197957	0	.	36039143	36040164	0	1	1021	0
chr20	36039346	36039958	H1_polyA+.117021	0	.	36039346	36039958	0	1	612	0
chr20	36039557	36043994	B_Cells_Pritchard.3234239	0	+	36039557	36043994	0	3	552,147,3100	0,947,1337
chr20	36043194	36043638	CD4_Plagnol_resting.64370	0	.	36043194	36043638	0	1	444	0
chr20	36442702	36443298	REMC_MyoepithelialBreast.92753	0	.	36442702	36443298	0	1	596	0
chr20	36448513	36449348	REMC_MyoepithelialBreast.92754	0	.	36448513	36449348	0	1	835	0
chr20	36452188	36452732	liver_polyA+.132538	0	.	36452188	36452732	0	1	544	0
chr20	36455323	36457884	REMC_LuminalBreast.99685	0	.	36455323	36457884	0	1	2561	0
chr20	36459410	36460479	REMC_LuminalBreast.99687	0	.	36459410	36460479	0	1	1069	0
chr20	36466232	36469192	B_Cells_Pritchard.3235529	0	+	36466232	36469192	0	1	2960	0
chr20	36466252	36469185	REMC_BreastStem.50126	0	.	36466252	36469185	0	1	2933	0
chr20	36468071	36478858	ENST00000422519	0	-	36468071	36478858	0	2	312,1692	0,9095
chr20	36468071	36469122	H1_polyA+.117063	0	.	36468071	36469122	0	1	1051	0
chr20	36468073	36478858	HIT000015799	0	-	36468073	36478858	0	2	310,1692	0,9093
chr20	36468093	36469215	B_cells_Cheung.198004	0	.	36468093	36469215	0	1	1122	0
chr20	36468099	36469139	HeLa_polyA+_Chen.36211	0	.	36468099	36469139	0	1	1040	0
chr20	36468261	36469109	brain_AmbionMAQC.45619	0	.	36468261	36469109	0	1	848	0
chr20	36469284	36469830	B_cells_Cheung.198003	0	.	36469284	36469830	0	1	546	0
chr20	36469319	36470153	REMC_LuminalBreast.99697	0	.	36469319	36470153	0	1	834	0
chr20	36469321	36470149	REMC_BreastStem.50128	0	.	36469321	36470149	0	1	828	0
chr20	36470381	36472004	REMC_LuminalBreast.99698	0	.	36470381	36472004	0	1	1623	0
chr20	36472086	36473581	B_cells_Cheung.198009	0	.	36472086	36473581	0	1	1495	0
chr20	36472205	36473124	HeLa_polyA+_Chen.36215	0	.	36472205	36473124	0	1	919	0
chr20	36472237	36473049	CD4_Plagnol_activated.66220	0	.	36472237	36473049	0	1	812	0
chr20	36472264	36473648	REMC_BreastStem.50131	0	.	36472264	36473648	0	1	1384	0
chr20	36472353	36474484	HIT000007684	0	+	36472353	36474484	0	1	2131	0
chr20	36472405	36473025	BT20_Thompson.22554	0	.	36472405	36473025	0	1	620	0
chr20	36472622	36473021	K562.46244	0	.	36472622	36473021	0	1	399	0
chr20	36472640	36473036	liver_polyA+.132540	0	.	36472640	36473036	0	1	396	0
chr20	36474964	36477023	B_cells_Cheung.198011	0	.	36474964	36477023	0	1	2059	0
chr20	36474972	36475502	CD4_Plagnol_resting.64391	0	.	36474972	36475502	0	1	530	0
chr20	36474974	36475412	ZR751_Thompson.24566	0	.	36474974	36475412	0	1	438	0
chr20	36474986	36475775	prostate_normal.60366	0	.	36474986	36475775	0	1	789	0
chr20	36474991	36475911	HeLa_polyA+_Chen.36219	0	.	36474991	36475911	0	1	920	0
chr20	36474997	36475726	A549_Myers.89233	0	.	36474997	36475726	0	1	729	0
chr20	36475005	36475740	melanoma_Garraway_short_term_cultures.70438	0	.	36475005	36475740	0	1	735	0
chr20	36475011	36475659	H9_polyA+.46230	0	.	36475011	36475659	0	1	648	0
chr20	36475012	36475763	CD4_Plagnol_activated.66223	0	.	36475012	36475763	0	1	751	0
chr20	36481491	36482143	ZR751_Thompson.24574	0	.	36481491	36482143	0	1	652	0
chr20	36481629	36482497	H9_polyA+.46234	0	.	36481629	36482497	0	1	868	0
chr20	36481646	36482317	MDAMB468_Thompson.25027	0	.	36481646	36482317	0	1	671	0
chr20	36481777	36482577	HeLa_polyA+_Chen.36235	0	.	36481777	36482577	0	1	800	0
chr20	36482550	36482965	HeLa_Bartel_miR-155_12hr.32872	0	.	36482550	36482965	0	1	415	0
chr20	36482634	36483160	HeLa_Bartel_WT_12hr.32739	0	.	36482634	36483160	0	1	526	0
chr20	36482650	36482958	lymph_node_Burge.50887	0	.	36482650	36482958	0	1	308	0
chr20	36482650	36483273	CD4_Snyder.75063	0	.	36482650	36483273	0	1	623	0
chr20	36482658	36483189	kidney_Gilad.85803	0	.	36482658	36483189	0	1	531	0
chr20	36482665	36482999	breast_Burge.41142	0	.	36482665	36482999	0	1	334	0
chr20	36482715	36483311	HeLa_polyA-_Chen.18874	0	.	36482715	36483311	0	1	596	0
chr20	36483856	36484886	HeLa_polyA-_Chen.18875	0	.	36483856	36484886	0	1	1030	0
chr20	36484467	36484905	MCF10A_Thompson.21844	0	.	36484467	36484905	0	1	438	0
chr20	36484521	36484862	CD4_Plagnol_activated.66227	0	.	36484521	36484862	0	1	341	0
chr20	36484561	36484900	H9_polyA-_Chen.14625	0	.	36484561	36484900	0	1	339	0
chr20	36490308	36491300	HeLa_polyA+_Chen.36238	0	.	36490308	36491300	0	1	992	0
chr20	36490341	36491101	MB435_Burge.44361	0	.	36490341	36491101	0	1	760	0
chr20	36490352	36491383	H1_rRNA-depleted_UCSD_REMC.88364	0	.	36490352	36491383	0	1	1031	0
chr20	36490560	36491137	HeLa_Bartel_miR-155_12hr.32876	0	.	36490560	36491137	0	1	577	0
chr20	36491368	36491674	MB435_Burge.44349	0	.	36491368	36491674	0	1	306	0
chr20	36492676	36493213	HeLa_Bartel_miR-155_12hr.32878	0	.	36492676	36493213	0	1	537	0
chr20	36497854	36498448	B_Cells_Pritchard.3235361	0	.	36497854	36498448	0	1	594	0
chr20	36510575	36511138	H9_polyA-_Chen.14626	0	.	36510575	36511138	0	1	563	0
chr20	36511758	36512176	MB435_Burge.44330	0	.	36511758	36512176	0	1	418	0
chr20	36511878	36512985	CD4_Plagnol_resting.64406	0	.	36511878	36512985	0	1	1107	0
chr20	36511964	36512978	liver_polyA+.132563	0	.	36511964	36512978	0	1	1014	0
chr20	36512219	36513037	melanoma_Garraway_short_term_cultures.70445	0	.	36512219	36513037	0	1	818	0
chr20	36512228	36512967	NEC_from_H9.76092	0	.	36512228	36512967	0	1	739	0
chr20	36512259	36512978	A549_Myers.89247	0	.	36512259	36512978	0	1	719	0
chr20	36512297	36512979	CD4_Plagnol_activated.66217	0	.	36512297	36512979	0	1	682	0
chr20	36512300	36512991	K562.46248	0	.	36512300	36512991	0	1	691	0
chr20	36512301	36512971	HME_Burge.41493	0	+	36512301	36512971	0	2	203,382	0,288
chr20	36512516	36512978	CD4_Snyder.75073	0	.	36512516	36512978	0	1	462	0
chr20	36512583	36512977	kidney_Gilad.85811	0	.	36512583	36512977	0	1	394	0
chr20	36512592	36512955	lymph_node_Burge.50900	0	.	36512592	36512955	0	1	363	0
chr20	36512592	36512972	colon_Burge.38537	0	.	36512592	36512972	0	1	380	0
chr20	36512593	36512965	MB435_Burge.44329	0	.	36512593	36512965	0	1	372	0
chr20	36512594	36512980	testes_Burge.54023	0	.	36512594	36512980	0	1	386	0
chr20	36512600	36512947	breast_Burge.41148	0	.	36512600	36512947	0	1	347	0
chr20	36652803	36653248	A549_Myers.89263	0	.	36652803	36653248	0	1	445	0
chr20	36714535	36715654	T47D_Burge_Thompson.29732	0	.	36714535	36715654	0	1	1119	0
chr20	36714942	36715293	prostate_carcinoma.100823	0	.	36714942	36715293	0	1	351	0
chr20	36714947	36715417	ZR751_Thompson.24584	0	.	36714947	36715417	0	1	470	0
chr20	36779170	36779684	B_cells_Cheung.198027	0	.	36779170	36779684	0	1	514	0
chr20	36835536	36836437	H1_polyA+.117100	0	.	36835536	36836437	0	1	901	0
chr20	36835557	36836288	B_cells_Cheung.198044	0	.	36835557	36836288	0	1	731	0
chr20	36835588	36837010	HepG2_Caltech_ENCODE.39219	0	.	36835588	36837010	0	1	1422	0
chr20	36835623	36836460	HeLa_polyA+_Chen.36241	0	.	36835623	36836460	0	1	837	0
chr20	36835636	36836988	REMC_BreastStem.50116	0	.	36835636	36836988	0	1	1352	0
chr20	36835663	36836473	MeWo_Garraway.37241	0	.	36835663	36836473	0	1	810	0
chr20	36835682	36836324	ZR751_Thompson.24590	0	.	36835682	36836324	0	1	642	0
chr20	36835705	36836310	MDAMB468_Thompson.25030	0	.	36835705	36836310	0	1	605	0
chr20	36841457	36841906	brain_AmbionMAQC.45651	0	.	36841457	36841906	0	1	449	0
chr20	36843783	36844940	H1_polyA+.117105	0	.	36843783	36844940	0	1	1157	0
chr20	36846571	36847357	REMC_BreastStem.50121	0	.	36846571	36847357	0	1	786	0
chr20	36847058	36847653	HepG2_Caltech_ENCODE.39223	0	.	36847058	36847653	0	1	595	0
chr20	36847097	36847898	prostate_carcinoma.100833	0	.	36847097	36847898	0	1	801	0
chr20	36847110	36847908	H1_polyA+.117107	0	.	36847110	36847908	0	1	798	0
chr20	36850994	36851386	A549_Myers.89291	0	.	36850994	36851386	0	1	392	0
chr20	37015248	37019110	B_Cells_Pritchard.3236117	0	-	37015248	37019110	0	2	1166,434	0,3428
chr20	37018432	37019103	H1_polyA+.117214	0	.	37018432	37019103	0	1	671	0
chr20	37104195	37105764	MIP101.70579	0	.	37104195	37105764	0	1	1569	0
chr20	37104320	37105579	B_cells_Cheung.198099	0	.	37104320	37105579	0	1	1259	0
chr20	37104466	37105916	H1_polyA+.117269	0	.	37104466	37105916	0	1	1450	0
chr20	37104730	37105431	prostate_carcinoma.100859	0	.	37104730	37105431	0	1	701	0
chr20	37104745	37106092	REMC_MyoepithelialBreast.92778	0	.	37104745	37106092	0	1	1347	0
chr20	37104777	37105533	B_Cells_Pritchard.3236515	0	.	37104777	37105533	0	1	756	0
chr20	37107396	37108465	MIP101.70580	0	.	37107396	37108465	0	1	1069	0
chr20	37111605	37112180	MIP101.70581	0	.	37111605	37112180	0	1	575	0
chr20	37111736	37112168	B_cells_Cheung.198106	0	.	37111736	37112168	0	1	432	0
chr20	37111832	37164708	pHIT000121195	0	-	37111832	37164708	0	3	528,80,97	0,9756,52779
chr20	37111832	37121645	pHIT000121187	0	-	37111832	37121645	0	2	528,57	0,9756
chr20	37111851	37121645	pHIT000035619	0	-	37111851	37121645	0	3	509,232,57	0,6153,9737
chr20	37112042	37121645	pHIT000121190	0	-	37112042	37121645	0	2	318,57	0,9546
chr20	37115379	37116386	REMC_MyoepithelialBreast.92779	0	.	37115379	37116386	0	1	1007	0
chr20	37119248	37119883	B_cells_Cheung.198108	0	.	37119248	37119883	0	1	635	0
chr20	37119275	37119824	B_Cells_Pritchard.3236573	0	.	37119275	37119824	0	1	549	0
chr20	37171377	37204816	pHIT000121191	0	-	37171377	37204816	0	3	157,130,82	0,14382,33357
chr20	37275727	37286805	HIT000097720	0	-	37275727	37286805	0	4	1148,116,166,194	0,1876,2276,10884
chr20	37275833	37286805	ENST00000412672	0	-	37275833	37286805	0	4	1042,116,166,194	0,1770,2170,10778
chr20	37275836	37286805	Rinn_00027851	0	-	37275836	37286805	0	4	1039,117,167,195	0,1766,2166,10774
chr20	37275837	37286805	NR_027124	0	-	37275837	37286805	0	4	1038,116,166,194	0,1766,2166,10774
chr20	37354939	37355502	B_cells_Cheung.198110	0	.	37354939	37355502	0	1	563	0
chr20	37488465	37580847	pHIT000094532	0	-	37488465	37580847	0	3	182,170,44	0,85636,92338
chr20	37524567	37580847	pHIT000121197	0	-	37524567	37580847	0	4	60,236,170,44	0,38803,49534,56236
chr20	37766210	37769094	REMC_BreastStem.50140	0	-	37766210	37769094	0	2	1081,47	0,2837
chr20	37766410	37767296	H1_polyA+.117118	0	.	37766410	37767296	0	1	886	0
chr20	37808530	37809502	REMC_BreastStem.50143	0	.	37808530	37809502	0	1	972	0
chr20	37809609	37810131	REMC_BreastStem.50144	0	.	37809609	37810131	0	1	522	0
chr20	37816024	37848074	REMC_BreastStem.50182	0	-	37816024	37848074	0	4	1348,1185,1020,300	0,2225,22463,31750
chr20	37818613	37819443	H1_polyA+.117120	0	.	37818613	37819443	0	1	830	0
chr20	37827568	37830720	REMC_BreastStem.50185	0	.	37827568	37830720	0	1	3152	0
chr20	37831711	37832434	H1_polyA+.117123	0	.	37831711	37832434	0	1	723	0
chr20	37831789	37834278	REMC_BreastStem.50188	0	.	37831789	37834278	0	1	2489	0
chr20	37836035	37838581	H1_polyA+.117126	0	.	37836035	37838581	0	1	2546	0
chr20	37844898	37848141	H1_polyA+.117128	0	.	37844898	37848141	0	1	3243	0
chr20	37846170	37848074	REMC_BreastStem.50183	0	.	37846170	37848074	0	1	1904	0
chr20	37847776	37875285	ENST00000444436	0	+	37847776	37875285	0	2	211,269	0,27240
chr20	37875510	37876073	B_cells_Cheung.198126	0	.	37875510	37876073	0	1	563	0
chr20	37891647	37894801	H1_polyA+.117139	0	.	37891647	37894801	0	1	3154	0
chr20	37927261	37929259	H1_polyA+.117146	0	.	37927261	37929259	0	1	1998	0
chr20	37930895	37978516	B_cells_Cheung.198133	0	+	37930895	37978516	0	5	87,86,134,196,120	0,13886,27925,28237,47501
chr20	37935074	37936327	H1_polyA+.117148	0	.	37935074	37936327	0	1	1253	0
chr20	37976034	37977597	H1_polyA+.117161	0	.	37976034	37977597	0	1	1563	0
chr20	38001418	38002854	H1_polyA+.117172	0	.	38001418	38002854	0	1	1436	0
chr20	38007904	38010111	H1_polyA+.117176	0	.	38007904	38010111	0	1	2207	0
chr20	38014529	38016079	H1_polyA+.117180	0	.	38014529	38016079	0	1	1550	0
chr20	38021539	38023990	H1_polyA+.117185	0	.	38021539	38023990	0	1	2451	0
chr20	38025979	38027528	H1_polyA+.117186	0	.	38025979	38027528	0	1	1549	0
chr20	38028517	38030193	H1_polyA+.117188	0	.	38028517	38030193	0	1	1676	0
chr20	38035698	38037652	H1_polyA+.117189	0	.	38035698	38037652	0	1	1954	0
chr20	38168437	38172039	H1_polyA+.117234	0	.	38168437	38172039	0	1	3602	0
chr20	38190916	38195793	H1_polyA+.117243	0	.	38190916	38195793	0	1	4877	0
chr20	38208476	38209810	H1_polyA+.117250	0	.	38208476	38209810	0	1	1334	0
chr20	38212332	38213651	H1_polyA+.117252	0	.	38212332	38213651	0	1	1319	0
chr20	38215814	38222691	H1_polyA+.117257	0	.	38215814	38222691	0	1	6877	0
chr20	38226987	38228950	H1_polyA+.117262	0	.	38226987	38228950	0	1	1963	0
chr20	38237429	38239535	H1_polyA+.117273	0	.	38237429	38239535	0	1	2106	0
chr20	38240042	38243013	H1_polyA+.117274	0	.	38240042	38243013	0	1	2971	0
chr20	38243090	38244631	H1_polyA+.117275	0	.	38243090	38244631	0	1	1541	0
chr20	38257654	38263612	H1_polyA+.117283	0	.	38257654	38263612	0	1	5958	0
chr20	38271713	38274836	H1_polyA+.117287	0	.	38271713	38274836	0	1	3123	0
chr20	38283215	38284429	H1_polyA+.117290	0	.	38283215	38284429	0	1	1214	0
chr20	38284883	38285582	H9_polyA-_Chen.14640	0	.	38284883	38285582	0	1	699	0
chr20	38285009	38286057	H1_polyA+.117291	0	.	38285009	38286057	0	1	1048	0
chr20	38290188	38292824	H1_polyA+.117293	0	.	38290188	38292824	0	1	2636	0
chr20	38292972	38298378	H1_polyA+.117295	0	.	38292972	38298378	0	1	5406	0
chr20	38300081	38301350	H1_polyA+.117297	0	.	38300081	38301350	0	1	1269	0
chr20	38302588	38307302	H1_polyA+.117298	0	.	38302588	38307302	0	1	4714	0
chr20	38306102	38306558	H1_rRNA-depleted_UCSD_REMC.88553	0	.	38306102	38306558	0	1	456	0
chr20	38333585	38336260	H1_polyA+.117328	0	+	38333585	38336260	0	4	209,415,523,144	0,369,1054,2531
chr20	38337869	38339608	H9_polyA+.46272	0	.	38337869	38339608	0	1	1739	0
chr20	38344504	38344913	H9_polyA+.46273	0	.	38344504	38344913	0	1	409	0
chr20	38461640	38463643	HIT000003563	0	+	38461640	38463643	0	1	2003	0
chr20	38718225	38719529	REMC_BreastStem.50191	0	.	38718225	38719529	0	1	1304	0
chr20	38720522	38722495	REMC_BreastStem.50192	0	.	38720522	38722495	0	1	1973	0
chr20	38726571	38729150	REMC_BreastStem.50203	0	.	38726571	38729150	0	1	2579	0
chr20	38729380	38732301	REMC_BreastStem.50204	0	.	38729380	38732301	0	1	2921	0
chr20	38729430	38730150	REMC_MyoepithelialBreast.92782	0	.	38729430	38730150	0	1	720	0
chr20	38731958	38745635	pHIT000035621	0	+	38731958	38745635	0	3	68,194,317	0,9333,13360
chr20	38732370	38734351	REMC_BreastStem.50195	0	.	38732370	38734351	0	1	1981	0
chr20	38734474	38736168	REMC_BreastStem.50196	0	.	38734474	38736168	0	1	1694	0
chr20	38735011	38736271	HepG2_Caltech_ENCODE.39243	0	.	38735011	38736271	0	1	1260	0
chr20	38735011	38739661	HepG2_Caltech_ENCODE.39242	0	-	38735011	38739661	0	2	815,392	0,4258
chr20	38738052	38738459	REMC_BreastStem.50198	0	.	38738052	38738459	0	1	407	0
chr20	38741110	38742114	REMC_BreastStem.50201	0	.	38741110	38742114	0	1	1004	0
chr20	38752989	38755629	prostate_normal.60396	0	.	38752989	38755629	0	1	2640	0
chr20	38757698	38779027	MDAMB231_Thompson.22600	0	-	38757698	38779027	0	5	2478,145,232,121,76	0,10001,15120,18667,21253
chr20	38757854	38760343	melanoma_Garraway_short_term_cultures.70467	0	.	38757854	38760343	0	1	2489	0
chr20	38758112	38779612	melanoma_Garraway_short_term_cultures.70468	0	-	38758112	38779612	0	4	2064,232,121,661	0,14706,18253,20839
chr20	38758441	38773022	MeI_Garraway.17999	0	-	38758441	38773022	0	3	1735,102,204	0,2184,14377
chr20	38758842	38759515	prostate_carcinoma.100861	0	.	38758842	38759515	0	1	673	0
chr20	38758910	38760163	B_cells_Cheung.198154	0	.	38758910	38760163	0	1	1253	0
chr20	38759480	38772870	Rinn_00028389	0	-	38759480	38772870	0	2	696,53	0,13337
chr20	38759823	38760596	prostate_carcinoma.100862	0	.	38759823	38760596	0	1	773	0
chr20	38766406	38767145	melanoma_Garraway_short_term_cultures.70470	0	.	38766406	38767145	0	1	739	0
chr20	38772753	38778976	B_cells_Cheung.198155	0	-	38772753	38778976	0	3	297,121,25	0,3612,6198
chr20	38806905	38808562	melanoma_Garraway_short_term_cultures.70480	0	.	38806905	38808562	0	1	1657	0
chr20	38807323	38808237	MeI_Garraway.18000	0	.	38807323	38808237	0	1	914	0
chr20	38808698	38809369	melanoma_Garraway_short_term_cultures.70481	0	.	38808698	38809369	0	1	671	0
chr20	38843037	38843696	melanoma_Garraway_short_term_cultures.70482	0	.	38843037	38843696	0	1	659	0
chr20	38901486	38904067	melanoma_Garraway_short_term_cultures.70487	0	.	38901486	38904067	0	1	2581	0
chr20	39030801	39031279	B_Cells_Pritchard.3241059	0	.	39030801	39031279	0	1	478	0
chr20	39030808	39031285	B_cells_Cheung.198158	0	.	39030808	39031285	0	1	477	0
chr20	39032211	39034270	B_cells_Cheung.198161	0	.	39032211	39034270	0	1	2059	0
chr20	39032960	39033737	B_Cells_Pritchard.3241063	0	.	39032960	39033737	0	1	777	0
chr20	39036940	39037612	B_cells_Cheung.198163	0	.	39036940	39037612	0	1	672	0
chr20	39040867	39043449	B_cells_Cheung.198175	0	.	39040867	39043449	0	1	2582	0
chr20	39041341	39042313	B_Cells_Pritchard.3241097	0	.	39041341	39042313	0	1	972	0
chr20	39044926	39049254	B_cells_Cheung.198176	0	.	39044926	39049254	0	1	4328	0
chr20	39044941	39045259	B_Cells_Pritchard.3241249	0	-	39044941	39045259	0	1	318	0
chr20	39049307	39049969	B_cells_Cheung.198164	0	.	39049307	39049969	0	1	662	0
chr20	39050281	39054947	B_cells_Cheung.198166	0	.	39050281	39054947	0	1	4666	0
chr20	39051569	39054949	MDAMB231_Thompson.22617	0	.	39051569	39054949	0	1	3380	0
chr20	39052333	39053744	melanoma_Garraway_short_term_cultures.70503	0	.	39052333	39053744	0	1	1411	0
chr20	39057433	39059516	B_cells_Cheung.198170	0	.	39057433	39059516	0	1	2083	0
chr20	39060544	39067532	B_Cells_Pritchard.3241159	0	-	39060544	39067532	0	2	166,2599	0,4389
chr20	39060931	39063199	B_cells_Cheung.198173	0	.	39060931	39063199	0	1	2268	0
chr20	39064380	39070893	B_cells_Cheung.198183	0	.	39064380	39070893	0	1	6513	0
chr20	39067719	39068685	B_Cells_Pritchard.3241185	0	-	39067719	39068685	0	1	966	0
chr20	39068824	39070775	B_Cells_Pritchard.3241187	0	-	39068824	39070775	0	1	1951	0
chr20	39079435	39080101	B_Cells_Pritchard.3241201	0	-	39079435	39080101	0	1	666	0
chr20	39082670	39084720	B_cells_Cheung.198194	0	.	39082670	39084720	0	1	2050	0
chr20	39082721	39084685	MCF7_Burge_Thompson.32362	0	.	39082721	39084685	0	1	1964	0
chr20	39193282	39195876	REMC_BreastStem.50208	0	.	39193282	39195876	0	1	2594	0
chr20	39193856	39194602	REMC_LuminalBreast.99725	0	.	39193856	39194602	0	1	746	0
chr20	39194730	39196002	REMC_LuminalBreast.99726	0	.	39194730	39196002	0	1	1272	0
chr20	39194746	39198132	REMC_MyoepithelialBreast.92798	0	.	39194746	39198132	0	1	3386	0
chr20	39195809	39196345	B_Cells_Pritchard.3241359	0	.	39195809	39196345	0	1	536	0
chr20	39196068	39196909	REMC_BreastStem.50209	0	.	39196068	39196909	0	1	841	0
chr20	39197238	39198487	Rinn_00028390	0	-	39197238	39198487	0	2	108,733	0,516
chr20	39197755	39198487	H9_polyA+.46299	0	.	39197755	39198487	0	1	732	0
chr20	39433358	39434753	REMC_LuminalBreast.99739	0	.	39433358	39434753	0	1	1395	0
chr20	39435743	39436868	REMC_LuminalBreast.99740	0	.	39435743	39436868	0	1	1125	0
chr20	39436774	39440664	pHIT000035629	0	-	39436774	39440664	0	4	215,103,92,34	0,469,2775,3856
chr20	39448399	39449791	REMC_LuminalBreast.99741	0	.	39448399	39449791	0	1	1392	0
chr20	39448853	39449400	REMC_MyoepithelialBreast.92821	0	.	39448853	39449400	0	1	547	0
chr20	39450363	39450868	melanoma_Garraway_short_term_cultures.70553	0	.	39450363	39450868	0	1	505	0
chr20	39451778	39453231	REMC_LuminalBreast.99742	0	.	39451778	39453231	0	1	1453	0
chr20	39453706	39455035	REMC_MyoepithelialBreast.92824	0	.	39453706	39455035	0	1	1329	0
chr20	39453846	39455326	REMC_LuminalBreast.99743	0	.	39453846	39455326	0	1	1480	0
chr20	39455128	39456763	REMC_MyoepithelialBreast.92825	0	.	39455128	39456763	0	1	1635	0
chr20	39455445	39456477	REMC_LuminalBreast.99744	0	.	39455445	39456477	0	1	1032	0
chr20	39456868	39458042	REMC_LuminalBreast.99745	0	.	39456868	39458042	0	1	1174	0
chr20	39685564	39686704	H1_polyA+.117337	0	.	39685564	39686704	0	1	1140	0
chr20	39715943	39719475	melanoma_Garraway_short_term_cultures.70567	0	.	39715943	39719475	0	1	3532	0
chr20	40062996	40063860	B_Cells_Pritchard.3243133	0	.	40062996	40063860	0	1	864	0
chr20	40077848	40078676	B_cells_Cheung.198309	0	.	40077848	40078676	0	1	828	0
chr20	40083789	40084953	REMC_MyoepithelialBreast.93207	0	.	40083789	40084953	0	1	1164	0
chr20	40124513	40125369	REMC_MyoepithelialBreast.93218	0	.	40124513	40125369	0	1	856	0
chr20	41252053	41264655	REMC_MyoepithelialBreast.93018	0	+	41252053	41264655	0	2	251,2006	0,10596
chr20	41254051	41258019	REMC_MyoepithelialBreast.93019	0	.	41254051	41258019	0	1	3968	0
chr20	41258844	41261518	REMC_MyoepithelialBreast.93020	0	.	41258844	41261518	0	1	2674	0
chr20	41446236	41446694	B_Cells_Pritchard.3246867	0	.	41446236	41446694	0	1	458	0
chr20	41465851	41466215	HepG2_Caltech_ENCODE.39295	0	.	41465851	41466215	0	1	364	0
chr20	41477870	41478274	B_Cells_Pritchard.3246981	0	.	41477870	41478274	0	1	404	0
chr20	41526712	41529120	melanoma_Garraway_short_term_cultures.70571	0	.	41526712	41529120	0	1	2408	0
chr20	41527603	41529142	CD4_Plagnol_activated.66386	0	.	41527603	41529142	0	1	1539	0
chr20	41528467	41529123	CD4_Snyder.75402	0	.	41528467	41529123	0	1	656	0
chr20	41532297	41532887	melanoma_Garraway_short_term_cultures.70575	0	.	41532297	41532887	0	1	590	0
chr20	41533928	41534688	CD4_Plagnol_activated.66391	0	.	41533928	41534688	0	1	760	0
chr20	41541000	41544703	REMC_LuminalBreast.99764	0	.	41541000	41544703	0	1	3703	0
chr20	41542954	41543255	B_cells_Cheung.198331	0	.	41542954	41543255	0	1	301	0
chr20	41548745	41550048	REMC_LuminalBreast.99767	0	.	41548745	41550048	0	1	1303	0
chr20	41552565	41553465	REMC_LuminalBreast.99769	0	.	41552565	41553465	0	1	900	0
chr20	41553727	41560274	REMC_BreastStem.50233	0	.	41553727	41560274	0	1	6547	0
chr20	41553798	41556174	REMC_MyoepithelialBreast.93025	0	.	41553798	41556174	0	1	2376	0
chr20	41554655	41555322	REMC_LuminalBreast.99771	0	.	41554655	41555322	0	1	667	0
chr20	41555419	41556325	REMC_LuminalBreast.99772	0	.	41555419	41556325	0	1	906	0
chr20	41561273	41562328	REMC_LuminalBreast.99776	0	.	41561273	41562328	0	1	1055	0
chr20	41561301	41562996	REMC_BreastStem.50234	0	.	41561301	41562996	0	1	1695	0
chr20	41561377	41562465	REMC_MyoepithelialBreast.93028	0	.	41561377	41562465	0	1	1088	0
chr20	41566217	41567818	REMC_BreastStem.50236	0	.	41566217	41567818	0	1	1601	0
chr20	41566237	41567281	REMC_LuminalBreast.99778	0	.	41566237	41567281	0	1	1044	0
chr20	41614597	41615194	B_cells_Cheung.198359	0	.	41614597	41615194	0	1	597	0
chr20	41614615	41615114	melanoma_Garraway_short_term_cultures.70598	0	.	41614615	41615114	0	1	499	0
chr20	41614617	41615214	HepG2_Caltech_ENCODE.39311	0	.	41614617	41615214	0	1	597	0
chr20	41618458	41619107	prostate_carcinoma.101055	0	.	41618458	41619107	0	1	649	0
chr20	41618624	41618989	H1_polyA+.117447	0	.	41618624	41618989	0	1	365	0
chr20	41619640	41619950	A549_Myers.89440	0	.	41619640	41619950	0	1	310	0
chr20	41650652	41651389	liver_polyA+.132907	0	+	41650652	41651389	0	2	230,187	0,550
chr20	41719122	41720276	B_Cells_Pritchard.3251069	0	-	41719122	41720276	0	1	1154	0
chr20	41719122	41720413	B_Cells_Pritchard.3251067	0	+	41719122	41720413	0	1	1291	0
chr20	41719505	41720195	CD4_Snyder.75414	0	.	41719505	41720195	0	1	690	0
chr20	41719534	41720044	A549_Myers.89472	0	.	41719534	41720044	0	1	510	0
chr20	41728543	41729035	B_Cells_Pritchard.3251083	0	-	41728543	41729035	0	1	492	0
chr20	41790056	41792032	B_Cells_Pritchard.3247605	0	.	41790056	41792032	0	1	1976	0
chr20	41790821	41791702	B_cells_Cheung.198430	0	.	41790821	41791702	0	1	881	0
chr20	41887279	41887967	MCF7_Burge_Thompson.32389	0	.	41887279	41887967	0	1	688	0
chr20	41890177	41891016	B_Cells_Pritchard.3247927	0	.	41890177	41891016	0	1	839	0
chr20	41891570	41891952	B_Cells_Pritchard.3247931	0	.	41891570	41891952	0	1	382	0
chr20	41893737	41895275	MDAMB231_Thompson.22656	0	.	41893737	41895275	0	1	1538	0
chr20	41893857	41894455	B_Cells_Pritchard.3247939	0	.	41893857	41894455	0	1	598	0
chr20	41900573	41901100	B_Cells_Pritchard.3247959	0	.	41900573	41901100	0	1	527	0
chr20	41905659	41906674	BT474_Burge_Thompson.35530	0	.	41905659	41906674	0	1	1015	0
chr20	41919098	41919626	BT474_Burge_Thompson.35531	0	.	41919098	41919626	0	1	528	0
chr20	42133031	42133698	B_Cells_Pritchard.3248461	0	.	42133031	42133698	0	1	667	0
chr20	42134342	42137212	REMC_MyoepithelialBreast.93067	0	.	42134342	42137212	0	1	2870	0
chr20	42142052	42142687	B_cells_Cheung.198480	0	.	42142052	42142687	0	1	635	0
chr20	42142520	42145673	REMC_MyoepithelialBreast.93072	0	.	42142520	42145673	0	1	3153	0
chr20	42146309	42147713	REMC_MyoepithelialBreast.93074	0	.	42146309	42147713	0	1	1404	0
chr20	42147837	42148671	REMC_MyoepithelialBreast.93075	0	.	42147837	42148671	0	1	834	0
chr20	42151640	42153986	REMC_MyoepithelialBreast.93077	0	.	42151640	42153986	0	1	2346	0
chr20	42158434	42163301	MCF10A_Thompson.21906	0	.	42158434	42163301	0	1	4867	0
chr20	42159192	42163699	MDAMB468_Thompson.25082	0	.	42159192	42163699	0	1	4507	0
chr20	42166058	42167497	T47D_Burge_Thompson.29796	0	.	42166058	42167497	0	1	1439	0
chr20	42168659	42172638	prostate_normal.60475	0	.	42168659	42172638	0	1	3979	0
chr20	42171102	42172475	H1_polyA+.117472	0	.	42171102	42172475	0	1	1373	0
chr20	42171690	42172464	skeletal_muscle_Burge.29821	0	.	42171690	42172464	0	1	774	0
chr20	42171721	42172488	REMC_LuminalBreast.99804	0	.	42171721	42172488	0	1	767	0
chr20	42172184	42172494	IMR90_UCSD_REMC.50313	0	+	42172184	42172494	0	1	310	0
chr20	42273068	42285760	HIT000094447	0	+	42273068	42285760	0	4	63,116,316,3918	0,3873,6352,8774
chr20	42274468	42274864	CD4_Plagnol_resting.64561	0	.	42274468	42274864	0	1	396	0
chr20	42275946	42276614	MIP101.70673	0	.	42275946	42276614	0	1	668	0
chr20	42276002	42276606	melanoma_Garraway_short_term_cultures.70622	0	.	42276002	42276606	0	1	604	0
chr20	42276029	42277228	REMC_MyoepithelialBreast.93104	0	.	42276029	42277228	0	1	1199	0
chr20	42276037	42277788	B_cells_Cheung.198496	0	.	42276037	42277788	0	1	1751	0
chr20	42280412	42286013	B_cells_Cheung.198497	0	.	42280412	42286013	0	1	5601	0
chr20	42281565	42282278	MIP101.70676	0	.	42281565	42282278	0	1	713	0
chr20	42281578	42282196	brain_AmbionMAQC.45735	0	.	42281578	42282196	0	1	618	0
chr20	42281579	42282189	prostate_normal.60500	0	.	42281579	42282189	0	1	610	0
chr20	42282292	42285597	REMC_MyoepithelialBreast.93107	0	.	42282292	42285597	0	1	3305	0
chr20	42282369	42283962	CD4_Plagnol_resting.64564	0	.	42282369	42283962	0	1	1593	0
chr20	42282392	42283249	MCF7_Burge_Thompson.32403	0	.	42282392	42283249	0	1	857	0
chr20	42282453	42283176	BT474_Burge_Thompson.35534	0	.	42282453	42283176	0	1	723	0
chr20	42282535	42283237	brain_AmbionMAQC.45736	0	.	42282535	42283237	0	1	702	0
chr20	42282590	42284041	CD4_Plagnol_activated.66417	0	.	42282590	42284041	0	1	1451	0
chr20	42282647	42283387	K562.46363	0	.	42282647	42283387	0	1	740	0
chr20	42282651	42283038	HeLa_polyA+_Chen.36332	0	.	42282651	42283038	0	1	387	0
chr20	42282826	42283913	MDAMB231_Thompson.22662	0	.	42282826	42283913	0	1	1087	0
chr20	42284247	42286158	prostate_carcinoma.101119	0	.	42284247	42286158	0	1	1911	0
chr20	42284266	42285001	brain_AmbionMAQC.45738	0	.	42284266	42285001	0	1	735	0
chr20	42284279	42285417	CD4_Plagnol_resting.64565	0	.	42284279	42285417	0	1	1138	0
chr20	42284344	42285438	prostate_normal.60502	0	.	42284344	42285438	0	1	1094	0
chr20	42284695	42285452	MCF7_Burge_Thompson.32404	0	.	42284695	42285452	0	1	757	0
chr20	42284719	42285441	HeLa_polyA+_Chen.36342	0	.	42284719	42285441	0	1	722	0
chr20	42290423	42291348	B_Cells_Pritchard.3248875	0	.	42290423	42291348	0	1	925	0
chr20	42347959	42348797	REMC_MyoepithelialBreast.93111	0	.	42347959	42348797	0	1	838	0
chr20	42354243	42355731	H1_polyA+.117501	0	.	42354243	42355731	0	1	1488	0
chr20	42354250	42354800	B_cells_Cheung.198527	0	.	42354250	42354800	0	1	550	0
chr20	42354424	42354791	MIP101.70699	0	.	42354424	42354791	0	1	367	0
chr20	42359804	42360762	H1_polyA+.117503	0	.	42359804	42360762	0	1	958	0
chr20	42359832	42360773	B_cells_Cheung.198534	0	.	42359832	42360773	0	1	941	0
chr20	42359849	42360699	liver_polyA+.132952	0	.	42359849	42360699	0	1	850	0
chr20	42359954	42360665	melanoma_Garraway_short_term_cultures.70630	0	.	42359954	42360665	0	1	711	0
chr20	42496418	42511674	liver_polyA+.133707	0	+	42496418	42511674	0	2	166,665	0,14591
chr20	42510848	42512659	Rinn_00028394	0	-	42510848	42512659	0	3	260,132,70	0,1164,1741
chr20	42531773	42533833	REMC_LuminalBreast.99965	0	.	42531773	42533833	0	1	2060	0
chr20	42714842	42716201	B_cells_Cheung.198584	0	.	42714842	42716201	0	1	1359	0
chr20	42716298	42718068	B_Cells_Pritchard.3250107	0	+	42716298	42718068	0	1	1770	0
chr20	42722525	42723105	prostate_carcinoma.101138	0	.	42722525	42723105	0	1	580	0
chr20	42730358	42745943	A549_Myers.89581	0	-	42730358	42745943	0	2	36,1742	0,13843
chr20	42736645	42736962	HeLa_polyA+_Chen.36374	0	.	42736645	42736962	0	1	317	0
chr20	42740296	42740772	brain_AmbionMAQC.45764	0	.	42740296	42740772	0	1	476	0
chr20	42743929	42744428	HeLa_polyA+_Chen.36375	0	.	42743929	42744428	0	1	499	0
chr20	42744084	42744613	HeLa_polyA-_Chen.18951	0	.	42744084	42744613	0	1	529	0
chr20	42757130	42758139	ENST00000419931	0	-	42757130	42758139	0	2	432,82	0,927
chr20	42768375	42769183	HIT000332749	0	-	42768375	42769183	0	2	522,182	0,626
chr20	42768391	42768938	B_Cells_Pritchard.3250281	0	.	42768391	42768938	0	1	547	0
chr20	42768518	42768887	A549_Myers.89585	0	.	42768518	42768887	0	1	369	0
chr20	42772828	42773946	prostate_carcinoma.101142	0	.	42772828	42773946	0	1	1118	0
chr20	42773047	42773645	T47D_Burge_Thompson.29815	0	.	42773047	42773645	0	1	598	0
chr20	42773187	42774175	B_Cells_Pritchard.3250301	0	.	42773187	42774175	0	1	988	0
chr20	42791036	42792160	A549_Myers.89587	0	.	42791036	42792160	0	1	1124	0
chr20	42791092	42792089	H1_polyA+.117542	0	.	42791092	42792089	0	1	997	0
chr20	42791297	42792258	HeLa_polyA-_Chen.18954	0	.	42791297	42792258	0	1	961	0
chr20	42793517	42796147	H1_polyA+.117543	0	.	42793517	42796147	0	1	2630	0
chr20	42793544	42793963	B_Cells_Pritchard.3250371	0	.	42793544	42793963	0	1	419	0
chr20	42793551	42794088	BT474_Burge_Thompson.35565	0	.	42793551	42794088	0	1	537	0
chr20	42799855	42800553	H1_polyA+.117545	0	.	42799855	42800553	0	1	698	0
chr20	42902391	42903510	H1_polyA+.117551	0	.	42902391	42903510	0	1	1119	0
chr20	42903861	42904788	H1_polyA+.117552	0	.	42903861	42904788	0	1	927	0
chr20	42906388	42907467	H1_polyA+.117554	0	.	42906388	42907467	0	1	1079	0
chr20	42908566	42909930	H1_polyA+.117555	0	.	42908566	42909930	0	1	1364	0
chr20	42918411	42919277	H1_polyA+.117556	0	.	42918411	42919277	0	1	866	0
chr20	43025794	43027505	B_cells_Cheung.199274	0	.	43025794	43027505	0	1	1711	0
chr20	43026581	43027504	B_Cells_Pritchard.3250883	0	.	43026581	43027504	0	1	923	0
chr20	43026664	43027493	K562.46408	0	.	43026664	43027493	0	1	829	0
chr20	43143356	43144056	HeLa_polyA+_Chen.36390	0	.	43143356	43144056	0	1	700	0
chr20	43143394	43144191	brain_AmbionMAQC.45785	0	.	43143394	43144191	0	1	797	0
chr20	43143482	43144162	CD4_Snyder.75497	0	.	43143482	43144162	0	1	680	0
chr20	43143549	43143895	H1_rRNA-depleted_UCSD_REMC.88823	0	.	43143549	43143895	0	1	346	0
chr20	43143591	43143914	colon_Raymond.124455	0	.	43143591	43143914	0	1	323	0
chr20	43143596	43144056	lymph_node_Burge.51146	0	.	43143596	43144056	0	1	460	0
chr20	43206457	43208255	BT474_Burge_Thompson.35595	0	.	43206457	43208255	0	1	1798	0
chr20	43208583	43209942	BT474_Burge_Thompson.35596	0	.	43208583	43209942	0	1	1359	0
chr20	43240123	43243393	H1_polyA+.117567	0	.	43240123	43243393	0	1	3270	0
chr20	43240259	43243427	REMC_LuminalBreast.99898	0	.	43240259	43243427	0	1	3168	0
chr20	43242075	43254985	Rinn_00028172	0	+	43242075	43254985	0	2	114,4711	0,8199
chr20	43243560	43244738	REMC_LuminalBreast.99899	0	.	43243560	43244738	0	1	1178	0
chr20	43247350	43253633	REMC_LuminalBreast.99902	0	.	43247350	43253633	0	1	6283	0
chr20	43251225	43252960	H1_polyA+.117569	0	.	43251225	43252960	0	1	1735	0
chr20	43258773	43265368	REMC_LuminalBreast.99904	0	.	43258773	43265368	0	1	6595	0
chr20	43292922	43295386	ENST00000461248	0	+	43292922	43295386	0	3	159,158,239	0,408,2225
chr20	43292983	43295131	REMC_LuminalBreast.99963	0	.	43292983	43295131	0	1	2148	0
chr20	43295246	43299273	REMC_LuminalBreast.99964	0	.	43295246	43299273	0	1	4027	0
chr20	43415174	43419282	REMC_LuminalBreast.102327	0	.	43415174	43419282	0	1	4108	0
chr20	43416657	43418315	REMC_MyoepithelialBreast.93717	0	.	43416657	43418315	0	1	1658	0
chr20	43416988	43418259	REMC_BreastStem.50523	0	.	43416988	43418259	0	1	1271	0
chr20	43419864	43422563	REMC_MyoepithelialBreast.93719	0	.	43419864	43422563	0	1	2699	0
chr20	43421194	43422360	REMC_BreastStem.50525	0	.	43421194	43422360	0	1	1166	0
chr20	43491977	43492282	CD4_Plagnol_resting.64653	0	.	43491977	43492282	0	1	305	0
chr20	43493096	43500684	REMC_LuminalBreast.99986	0	.	43493096	43500684	0	1	7588	0
chr20	43493562	43493912	prostate_normal.60592	0	.	43493562	43493912	0	1	350	0
chr20	43496752	43500690	REMC_MyoepithelialBreast.93747	0	.	43496752	43500690	0	1	3938	0
chr20	43497177	43500477	B_Cells_Pritchard.3252221	0	-	43497177	43500477	0	1	3300	0
chr20	43497318	43510379	HIT000047826	0	-	43497318	43510379	0	2	707,1094	0,11967
chr20	43497355	43499556	B_cells_Cheung.198682	0	.	43497355	43499556	0	1	2201	0
chr20	43497381	43499188	H1_polyA+.117695	0	.	43497381	43499188	0	1	1807	0
chr20	43498779	43499169	A549_Myers.89662	0	.	43498779	43499169	0	1	390	0
chr20	43499329	43500559	H1_polyA+.117696	0	.	43499329	43500559	0	1	1230	0
chr20	43499688	43500671	B_cells_Cheung.198683	0	.	43499688	43500671	0	1	983	0
chr20	43501786	43506249	REMC_LuminalBreast.99988	0	.	43501786	43506249	0	1	4463	0
chr20	43501993	43502762	REMC_MyoepithelialBreast.93748	0	.	43501993	43502762	0	1	769	0
chr20	43502002	43502867	B_cells_Cheung.198685	0	.	43502002	43502867	0	1	865	0
chr20	43502007	43502783	CD4_Plagnol_activated.66553	0	.	43502007	43502783	0	1	776	0
chr20	43502007	43503540	HepG2_Caltech_ENCODE.39404	0	.	43502007	43503540	0	1	1533	0
chr20	43502011	43504543	B_Cells_Pritchard.3252227	0	.	43502011	43504543	0	1	2532	0
chr20	43505512	43509450	H1_polyA+.117698	0	.	43505512	43509450	0	1	3938	0
chr20	43506987	43509290	prostate_carcinoma.101256	0	.	43506987	43509290	0	1	2303	0
chr20	43507349	43509302	melanoma_Garraway_short_term_cultures.70711	0	.	43507349	43509302	0	1	1953	0
chr20	43507484	43510634	HIT000049656	0	+	43507484	43510634	0	1	3150	0
chr20	43507743	43508068	H1_rRNA-depleted_UCSD_REMC.88890	0	.	43507743	43508068	0	1	325	0
chr20	43508222	43509291	MIP101.70810	0	.	43508222	43509291	0	1	1069	0
chr20	43508496	43509240	B_Cells_Pritchard.3252237	0	.	43508496	43509240	0	1	744	0
chr20	43508499	43509027	prostate_normal.60596	0	.	43508499	43509027	0	1	528	0
chr20	43508503	43509170	B_cells_Cheung.198694	0	.	43508503	43509170	0	1	667	0
chr20	43508539	43508939	XR_078906	0	+	43508539	43508939	0	1	400	0
chr20	43508617	43509402	CD4_Plagnol_activated.66557	0	.	43508617	43509402	0	1	785	0
chr20	43509528	43510810	B_cells_Cheung.198696	0	.	43509528	43510810	0	1	1282	0
chr20	43509530	43511092	B_Cells_Pritchard.3252241	0	.	43509530	43511092	0	1	1562	0
chr20	43509539	43510878	prostate_normal.60597	0	.	43509539	43510878	0	1	1339	0
chr20	43509540	43520073	prostate_carcinoma.101254	0	-	43509540	43520073	0	2	1354,549	0,9984
chr20	43509546	43509879	colon_Burge.38733	0	.	43509546	43509879	0	1	333	0
chr20	43509550	43511026	CD4_Plagnol_activated.66558	0	.	43509550	43511026	0	1	1476	0
chr20	43509553	43509929	A549_Myers.89663	0	.	43509553	43509929	0	1	376	0
chr20	43509565	43511864	H1_polyA+.117700	0	.	43509565	43511864	0	1	2299	0
chr20	43510327	43510789	H9_polyA+.46419	0	.	43510327	43510789	0	1	462	0
chr20	43514318	43516943	REMC_LuminalBreast.99991	0	.	43514318	43516943	0	1	2625	0
chr20	43517542	43518344	REMC_LuminalBreast.99992	0	.	43517542	43518344	0	1	802	0
chr20	43517692	43518352	REMC_MyoepithelialBreast.93754	0	.	43517692	43518352	0	1	660	0
chr20	43518277	43518908	B_cells_Cheung.198698	0	.	43518277	43518908	0	1	631	0
chr20	43518483	43521589	REMC_LuminalBreast.99993	0	.	43518483	43521589	0	1	3106	0
chr20	43518782	43519361	prostate_normal.60591	0	.	43518782	43519361	0	1	579	0
chr20	43519332	43520631	H1_polyA+.117701	0	.	43519332	43520631	0	1	1299	0
chr20	43549428	43549937	H1_polyA+.117629	0	.	43549428	43549937	0	1	509	0
chr20	43551834	43552556	H1_polyA+.117631	0	.	43551834	43552556	0	1	722	0
chr20	43554506	43555110	H1_polyA+.117633	0	.	43554506	43555110	0	1	604	0
chr20	43556230	43556889	H1_polyA+.117634	0	.	43556230	43556889	0	1	659	0
chr20	43569929	43570667	H1_polyA+.117636	0	.	43569929	43570667	0	1	738	0
chr20	43584898	43587602	REMC_MyoepithelialBreast.93766	0	.	43584898	43587602	0	1	2704	0
chr20	43776524	43778951	REMC_LuminalBreast.100033	0	.	43776524	43778951	0	1	2427	0
chr20	43804356	43805588	H1_polyA+.117670	0	.	43804356	43805588	0	1	1232	0
chr20	43988137	43991100	REMC_BreastStem.50407	0	.	43988137	43991100	0	1	2963	0
chr20	43993698	43994337	brain_AmbionMAQC.45871	0	.	43993698	43994337	0	1	639	0
chr20	44058345	44060288	HIT000016824	0	+	44058345	44060288	0	1	1943	0
chr20	44194743	44195735	B_cells_Cheung.198844	0	.	44194743	44195735	0	1	992	0
chr20	44194751	44195266	A549_Myers.89741	0	.	44194751	44195266	0	1	515	0
chr20	44194785	44195536	REMC_BreastStem.50415	0	.	44194785	44195536	0	1	751	0
chr20	44198538	44198961	B_cells_Cheung.198848	0	.	44198538	44198961	0	1	423	0
chr20	44202901	44203477	B_Cells_Pritchard.3253641	0	.	44202901	44203477	0	1	576	0
chr20	44229191	44229768	brain_AmbionMAQC.45874	0	.	44229191	44229768	0	1	577	0
chr20	44230124	44231261	brain_AmbionMAQC.45875	0	.	44230124	44231261	0	1	1137	0
chr20	44230448	44233283	Rinn_00028055	0	-	44230448	44233283	0	2	1673,466	0,2369
chr20	44230449	44233283	HIT000014025	0	-	44230449	44233283	0	2	1672,465	0,2369
chr20	44230449	44233283	ENST00000450586	0	-	44230449	44233283	0	2	1672,465	0,2369
chr20	44233418	44233894	B_cells_Cheung.198852	0	.	44233418	44233894	0	1	476	0
chr20	44233845	44234504	B_Cells_Pritchard.3253767	0	.	44233845	44234504	0	1	659	0
chr20	44386373	44390224	REMC_LuminalBreast.100075	0	.	44386373	44390224	0	1	3851	0
chr20	44387987	44388767	REMC_MyoepithelialBreast.93487	0	.	44387987	44388767	0	1	780	0
chr20	44390920	44392243	REMC_LuminalBreast.100074	0	.	44390920	44392243	0	1	1323	0
chr20	44392373	44393785	REMC_LuminalBreast.100076	0	.	44392373	44393785	0	1	1412	0
chr20	44393921	44394973	REMC_MyoepithelialBreast.93488	0	.	44393921	44394973	0	1	1052	0
chr20	44393986	44397825	HIT000048578	0	-	44393986	44397825	0	1	3839	0
chr20	44394317	44394736	A549_Myers.89758	0	.	44394317	44394736	0	1	419	0
chr20	44394366	44399935	REMC_LuminalBreast.100077	0	.	44394366	44399935	0	1	5569	0
chr20	44395799	44397866	HepG2_Caltech_ENCODE.39445	0	.	44395799	44397866	0	1	2067	0
chr20	44396238	44398285	REMC_MyoepithelialBreast.93489	0	.	44396238	44398285	0	1	2047	0
chr20	44399740	44400412	B_Cells_Pritchard.3254341	0	.	44399740	44400412	0	1	672	0
chr20	44404890	44405688	REMC_MyoepithelialBreast.93492	0	.	44404890	44405688	0	1	798	0
chr20	44405469	44405814	B_Cells_Pritchard.3254357	0	.	44405469	44405814	0	1	345	0
chr20	44406382	44408813	B_Cells_Pritchard.3254363	0	-	44406382	44408813	0	2	1517,792	0,1639
chr20	44406391	44407933	B_cells_Cheung.198863	0	.	44406391	44407933	0	1	1542	0
chr20	44406449	44407695	H1_polyA+.117736	0	.	44406449	44407695	0	1	1246	0
chr20	44406862	44407180	IMR90_UCSD_REMC.50454	0	+	44406862	44407180	0	1	318	0
chr20	44407232	44407842	melanoma_Garraway_short_term_cultures.70772	0	.	44407232	44407842	0	1	610	0
chr20	44407252	44407850	CD4_Plagnol_activated.66638	0	.	44407252	44407850	0	1	598	0
chr20	44408007	44408816	B_cells_Cheung.198864	0	.	44408007	44408816	0	1	809	0
chr20	44408037	44410580	HeLa_polyA+_Chen.36451	0	.	44408037	44410580	0	1	2543	0
chr20	44408046	44408806	MCF10A_Thompson.21952	0	.	44408046	44408806	0	1	760	0
chr20	44409327	44409805	H9_polyA+.46477	0	.	44409327	44409805	0	1	478	0
chr20	44495686	44508330	HIT000011519	0	+	44495686	44508330	0	2	244,2602	0,10042
chr20	44499996	44500885	prostate_carcinoma.101437	0	.	44499996	44500885	0	1	889	0
chr20	44501091	44503502	H1_polyA+.117764	0	.	44501091	44503502	0	1	2411	0
chr20	44501132	44503409	prostate_carcinoma.101438	0	.	44501132	44503409	0	1	2277	0
chr20	44501350	44502378	B_Cells_Pritchard.3254533	0	.	44501350	44502378	0	1	1028	0
chr20	44503779	44508050	H1_polyA+.117765	0	.	44503779	44508050	0	1	4271	0
chr20	44504992	44507198	B_Cells_Pritchard.3254543	0	.	44504992	44507198	0	1	2206	0
chr20	44505180	44506443	prostate_carcinoma.101440	0	.	44505180	44506443	0	1	1263	0
chr20	44505309	44505626	B_cells_Cheung.198869	0	.	44505309	44505626	0	1	317	0
chr20	44505310	44506604	HepG2_Caltech_ENCODE.39457	0	.	44505310	44506604	0	1	1294	0
chr20	44505731	44508211	brain_AmbionMAQC.45970	0	.	44505731	44508211	0	1	2480	0
chr20	44506840	44508842	REMC_LuminalBreast.100096	0	.	44506840	44508842	0	1	2002	0
chr20	44511684	44513550	H1_polyA+.117767	0	.	44511684	44513550	0	1	1866	0
chr20	44512030	44512952	REMC_MyoepithelialBreast.93499	0	.	44512030	44512952	0	1	922	0
chr20	44512458	44513538	brain_AmbionMAQC.45976	0	.	44512458	44513538	0	1	1080	0
chr20	44512669	44515115	REMC_LuminalBreast.100097	0	.	44512669	44515115	0	1	2446	0
chr20	44512676	44513500	prostate_carcinoma.101447	0	.	44512676	44513500	0	1	824	0
chr20	44512884	44513437	prostate_normal.60665	0	.	44512884	44513437	0	1	553	0
chr20	44513782	44515480	prostate_carcinoma.101448	0	.	44513782	44515480	0	1	1698	0
chr20	44519068	44521769	HepG2_Caltech_ENCODE.39460	0	-	44519068	44521769	0	2	892,505	0,2196
chr20	44519191	44521528	prostate_carcinoma.101444	0	-	44519191	44521528	0	2	769,264	0,2073
chr20	44519440	44521470	brain_AmbionMAQC.45978	0	-	44519440	44521470	0	2	520,206	0,1824
chr20	44520545	44521405	prostate_normal.60668	0	.	44520545	44521405	0	1	860	0
chr20	44520744	44521078	H1_polyA+.117768	0	.	44520744	44521078	0	1	334	0
chr20	44520955	44521694	B_Cells_Pritchard.3254605	0	+	44520955	44521694	0	1	739	0
chr20	44521126	44521694	B_Cells_Pritchard.3254607	0	-	44521126	44521694	0	1	568	0
chr20	44521268	44521630	B_cells_Cheung.198878	0	.	44521268	44521630	0	1	362	0
chr20	44523480	44525114	H1_polyA+.117769	0	.	44523480	44525114	0	1	1634	0
chr20	44523630	44524210	prostate_carcinoma.101450	0	.	44523630	44524210	0	1	580	0
chr20	44527914	44530360	H1_polyA+.117773	0	.	44527914	44530360	0	1	2446	0
chr20	44555181	44555850	B_Cells_Pritchard.3254787	0	.	44555181	44555850	0	1	669	0
chr20	44810988	44812964	HIT000048673	0	-	44810988	44812964	0	1	1976	0
chr20	44811011	44813154	BT20_Thompson.22687	0	.	44811011	44813154	0	1	2143	0
chr20	44811020	44813143	prostate_carcinoma.101331	0	.	44811020	44813143	0	1	2123	0
chr20	44812253	44814094	prostate_carcinoma.101332	0	+	44812253	44814094	0	2	17,689	0,1152
chr20	44813132	44814153	HIT000262020	0	-	44813132	44814153	0	1	1021	0
chr20	44813163	44814151	XR_078909	0	-	44813163	44814151	0	1	988	0
chr20	44813444	44814073	BT20_Thompson.22688	0	.	44813444	44814073	0	1	629	0
chr20	45255582	45259882	REMC_LuminalBreast.100115	0	.	45255582	45259882	0	1	4300	0
chr20	45256282	45257178	REMC_MyoepithelialBreast.93540	0	.	45256282	45257178	0	1	896	0
chr20	45257019	45258040	prostate_normal.60739	0	.	45257019	45258040	0	1	1021	0
chr20	45257486	45258573	prostate_carcinoma.101413	0	.	45257486	45258573	0	1	1087	0
chr20	45259805	45260943	REMC_MyoepithelialBreast.93541	0	.	45259805	45260943	0	1	1138	0
chr20	45263122	45263582	B_cells_Cheung.199034	0	.	45263122	45263582	0	1	460	0
chr20	45263130	45263530	B_Cells_Pritchard.3256887	0	.	45263130	45263530	0	1	400	0
chr20	45264702	45265702	REMC_LuminalBreast.100117	0	.	45264702	45265702	0	1	1000	0
chr20	45433085	45433480	B_Cells_Pritchard.3257311	0	+	45433085	45433480	0	1	395	0
chr20	45439352	45439682	MCF7_Burge_Thompson.32544	0	.	45439352	45439682	0	1	330	0
chr20	45439365	45439793	BT474_Burge_Thompson.35711	0	.	45439365	45439793	0	1	428	0
chr20	45441680	45474931	B_Cells_Pritchard.3257329	0	+	45441680	45474931	0	17	694,70,198,1098,1103,337,16,588,653,177,358,153,450,355,566,22,32	0,830,2480,2964,4113,5219,7012,17372,26340,27128,28961,29348,30855,31720,32377,33078,33219
chr20	45444024	45476093	B_cells_Cheung.199057	0	-	45444024	45476093	0	6	3146,139,197,478,126,1873	0,10085,15275,24909,29394,30196
chr20	45444419	45477962	B_Cells_Pritchard.3257327	0	-	45444419	45477962	0	19	1361,1098,324,23,73,1403,29,87,332,618,585,48,26,463,159,922,358,597,40	0,1377,2493,3305,9381,9562,11048,13719,14880,21240,22513,23230,23302,23694,24284,24514,28999,29615,33503
chr20	45444984	45445479	BT474_Burge_Thompson.35713	0	.	45444984	45445479	0	1	495	0
chr20	45444996	45446739	K562.46510	0	.	45444996	45446739	0	1	1743	0
chr20	45445561	45446688	BT474_Burge_Thompson.35714	0	.	45445561	45446688	0	1	1127	0
chr20	45445796	45446665	MCF7_Burge_Thompson.32552	0	.	45445796	45446665	0	1	869	0
chr20	45445896	45446487	A549_Myers.89847	0	.	45445896	45446487	0	1	591	0
chr20	45445995	45447080	HepG2_Caltech_ENCODE.39494	0	.	45445995	45447080	0	1	1085	0
chr20	45449754	45450138	MCF7_Burge_Thompson.32549	0	.	45449754	45450138	0	1	384	0
chr20	45470644	45470976	B_cells_Cheung.199073	0	.	45470644	45470976	0	1	332	0
chr20	45488472	45489005	B_cells_Cheung.199090	0	.	45488472	45489005	0	1	533	0
chr20	45498758	45499997	REMC_LuminalBreast.100151	0	.	45498758	45499997	0	1	1239	0
chr20	45498894	45500049	B_cells_Cheung.199101	0	.	45498894	45500049	0	1	1155	0
chr20	45500791	45501750	MCF7_Burge_Thompson.32562	0	.	45500791	45501750	0	1	959	0
chr20	45500794	45501738	BT474_Burge_Thompson.35787	0	.	45500794	45501738	0	1	944	0
chr20	45501221	45502867	REMC_LuminalBreast.100152	0	.	45501221	45502867	0	1	1646	0
chr20	45502926	45503327	B_cells_Cheung.199105	0	.	45502926	45503327	0	1	401	0
chr20	45521736	45522134	MCF7_Burge_Thompson.32571	0	.	45521736	45522134	0	1	398	0
chr20	45542684	45543162	BT474_Burge_Thompson.35792	0	.	45542684	45543162	0	1	478	0
chr20	45854461	45854940	REMC_LuminalBreast.100198	0	.	45854461	45854940	0	1	479	0
chr20	45857763	45858186	MCF7_Burge_Thompson.32596	0	.	45857763	45858186	0	1	423	0
chr20	45863071	45863704	BT474_Burge_Thompson.35794	0	.	45863071	45863704	0	1	633	0
chr20	45863118	45863591	MCF7_Burge_Thompson.32601	0	.	45863118	45863591	0	1	473	0
chr20	45867708	45868665	MDAMB468_Thompson.25180	0	.	45867708	45868665	0	1	957	0
chr20	45868688	45869621	MCF7_Burge_Thompson.32602	0	.	45868688	45869621	0	1	933	0
chr20	45871768	45872349	BT474_Burge_Thompson.35795	0	.	45871768	45872349	0	1	581	0
chr20	45873684	45875883	MDAMB468_Thompson.25181	0	.	45873684	45875883	0	1	2199	0
chr20	45881145	45881604	MCF7_Burge_Thompson.32604	0	.	45881145	45881604	0	1	459	0
chr20	45889565	45896268	pHIT000121311	0	+	45889565	45896268	0	4	147,112,294,197	0,776,4301,6506
chr20	45905196	45905916	REMC_LuminalBreast.100202	0	.	45905196	45905916	0	1	720	0
chr20	45906139	45906615	BT474_Burge_Thompson.35797	0	.	45906139	45906615	0	1	476	0
chr20	45906148	45906534	REMC_LuminalBreast.100203	0	.	45906148	45906534	0	1	386	0
chr20	45918333	45918863	B_Cells_Pritchard.3258125	0	.	45918333	45918863	0	1	530	0
chr20	45952816	45961804	pHIT000121309	0	-	45952816	45961804	0	3	71,84,271	0,159,8717
chr20	45956521	45961681	Rinn_00028418	0	-	45956521	45961681	0	2	4565,149	0,5011
chr20	45956538	45962226	Rinn_00028419	0	-	45956538	45962226	0	5	503,423,43,2994,694	0,600,1316,1554,4994
chr20	45956862	45957632	HepG2_Caltech_ENCODE.39504	0	.	45956862	45957632	0	1	770	0
chr20	45956913	45957632	brain_AmbionMAQC.45934	0	.	45956913	45957632	0	1	719	0
chr20	46003185	46004227	MCF7_Burge_Thompson.32606	0	.	46003185	46004227	0	1	1042	0
chr20	46010584	46011214	MCF7_Burge_Thompson.32619	0	.	46010584	46011214	0	1	630	0
chr20	46012821	46013377	MCF7_Burge_Thompson.32622	0	.	46012821	46013377	0	1	556	0
chr20	46013609	46020678	MCF7_Burge_Thompson.32623	0	.	46013609	46020678	0	1	7069	0
chr20	46013609	46020678	MCF7_Burge_Thompson.32624	0	+	46013609	46020678	0	2	6678,265	0,6804
chr20	46013631	46020285	BT474_Burge_Thompson.35802	0	.	46013631	46020285	0	1	6654	0
chr20	46013915	46023409	BT474_Burge_Thompson.35803	0	-	46013915	46023409	0	3	2183,488,733	0,5878,8761
chr20	46015955	46035031	pHIT000121310	0	-	46015955	46035031	0	3	143,62,275	0,8467,18801
chr20	46022265	46023495	MCF7_Burge_Thompson.32609	0	.	46022265	46023495	0	1	1230	0
chr20	46024298	46025270	BT474_Burge_Thompson.35805	0	.	46024298	46025270	0	1	972	0
chr20	46024740	46025368	MCF7_Burge_Thompson.32610	0	.	46024740	46025368	0	1	628	0
chr20	46030745	46031500	BT474_Burge_Thompson.35809	0	.	46030745	46031500	0	1	755	0
chr20	46032255	46033788	MCF7_Burge_Thompson.32615	0	.	46032255	46033788	0	1	1533	0
chr20	46033470	46034093	REMC_LuminalBreast.100204	0	.	46033470	46034093	0	1	623	0
chr20	46034363	46035408	MCF7_Burge_Thompson.32617	0	.	46034363	46035408	0	1	1045	0
chr20	46035968	46040561	MCF7_Burge_Thompson.32668	0	.	46035968	46040561	0	1	4593	0
chr20	46038912	46040283	HIT000048811	0	-	46038912	46040283	0	1	1371	0
chr20	46045553	46046464	Rinn_00027940	0	+	46045553	46046464	0	2	119,333	0,578
chr20	46045554	46046464	ENST00000425385	0	+	46045554	46046464	0	2	118,332	0,578
chr20	46081035	46083268	MCF7_Burge_Thompson.32674	0	.	46081035	46083268	0	1	2233	0
chr20	46086937	46136336	Rinn_00028194	0	+	46086937	46136336	0	4	479,178,711,2865	0,27288,44406,46534
chr20	46087221	46087570	B_Cells_Pritchard.3258575	0	.	46087221	46087570	0	1	349	0
chr20	46087274	46089672	B_cells_Cheung.199158	0	.	46087274	46089672	0	1	2398	0
chr20	46087345	46121655	MCF10A_Thompson.21976	0	+	46087345	46121655	0	2	71,7429	0,26881
chr20	46101661	46102086	B_cells_Cheung.199166	0	.	46101661	46102086	0	1	425	0
chr20	46101694	46102088	B_Cells_Pritchard.3258631	0	.	46101694	46102088	0	1	394	0
chr20	46115489	46121444	MCF7_Burge_Thompson.32678	0	.	46115489	46121444	0	1	5955	0
chr20	46120923	46121430	B_cells_Cheung.199172	0	.	46120923	46121430	0	1	507	0
chr20	46122504	46123240	MCF7_Burge_Thompson.32680	0	.	46122504	46123240	0	1	736	0
chr20	46122724	46123241	B_Cells_Pritchard.3258701	0	.	46122724	46123241	0	1	517	0
chr20	46125356	46126293	B_cells_Cheung.199177	0	.	46125356	46126293	0	1	937	0
chr20	46126627	46129816	HIT000047405	0	+	46126627	46129816	0	1	3189	0
chr20	46131539	46132508	B_Cells_Pritchard.3258727	0	.	46131539	46132508	0	1	969	0
chr20	46132154	46133044	B_cells_Cheung.199185	0	.	46132154	46133044	0	1	890	0
chr20	46135478	46136339	prostate_carcinoma.101509	0	.	46135478	46136339	0	1	861	0
chr20	46135776	46136335	MCF10A_Thompson.21975	0	.	46135776	46136335	0	1	559	0
chr20	46138751	46139568	MCF7_Burge_Thompson.32629	0	.	46138751	46139568	0	1	817	0
chr20	46141237	46141614	MCF7_Burge_Thompson.32630	0	.	46141237	46141614	0	1	377	0
chr20	46154125	46155405	MCF7_Burge_Thompson.32632	0	.	46154125	46155405	0	1	1280	0
chr20	46156409	46157879	MCF7_Burge_Thompson.32637	0	.	46156409	46157879	0	1	1470	0
chr20	46158273	46161842	MCF7_Burge_Thompson.32638	0	.	46158273	46161842	0	1	3569	0
chr20	46161954	46163908	MCF7_Burge_Thompson.32639	0	.	46161954	46163908	0	1	1954	0
chr20	46164225	46165672	MCF7_Burge_Thompson.32641	0	.	46164225	46165672	0	1	1447	0
chr20	46175893	46177276	MCF7_Burge_Thompson.32633	0	.	46175893	46177276	0	1	1383	0
chr20	46182800	46188900	K562.46515	0	.	46182800	46188900	0	1	6100	0
chr20	46182800	46188900	K562.46516	0	+	46182800	46188900	0	2	4449,1466	0,4634
chr20	46182999	46188932	Rinn_00028422	0	-	46182999	46188932	0	2	5121,716	0,5217
chr20	46185278	46187778	MCF7_Burge_Thompson.32643	0	.	46185278	46187778	0	1	2500	0
chr20	46257357	46260796	MCF7_Burge_Thompson.32648	0	.	46257357	46260796	0	1	3439	0
chr20	46260896	46264806	MCF7_Burge_Thompson.32650	0	.	46260896	46264806	0	1	3910	0
chr20	46263482	46264029	A549_Myers.89888	0	.	46263482	46264029	0	1	547	0
chr20	46266674	46267163	A549_Myers.89898	0	.	46266674	46267163	0	1	489	0
chr20	46272130	46273129	BT474_Burge_Thompson.35817	0	.	46272130	46273129	0	1	999	0
chr20	46272270	46273310	MCF7_Burge_Thompson.32644	0	.	46272270	46273310	0	1	1040	0
chr20	46277596	46278209	BT474_Burge_Thompson.35819	0	.	46277596	46278209	0	1	613	0
chr20	46277728	46278381	MCF7_Burge_Thompson.32645	0	.	46277728	46278381	0	1	653	0
chr20	46279808	46280712	MCF7_Burge_Thompson.32646	0	.	46279808	46280712	0	1	904	0
chr20	46279809	46280740	BT474_Burge_Thompson.35821	0	.	46279809	46280740	0	1	931	0
chr20	46279919	46280597	B_Cells_Pritchard.3259073	0	.	46279919	46280597	0	1	678	0
chr20	46286355	46287011	MCF7_Burge_Thompson.32653	0	.	46286355	46287011	0	1	656	0
chr20	46287079	46287964	BT474_Burge_Thompson.35822	0	.	46287079	46287964	0	1	885	0
chr20	46322609	46322972	B_Cells_Pritchard.3259213	0	.	46322609	46322972	0	1	363	0
chr20	46358263	46358594	B_cells_Cheung.199188	0	.	46358263	46358594	0	1	331	0
chr20	46405458	46408132	Rinn_00028199	0	+	46405458	46408132	0	2	829,1050	0,1624
chr20	46406579	46408241	B_cells_Cheung.199195	0	.	46406579	46408241	0	1	1662	0
chr20	46408308	46409176	B_cells_Cheung.199196	0	.	46408308	46409176	0	1	868	0
chr20	46408456	46409086	B_Cells_Pritchard.3259471	0	-	46408456	46409086	0	1	630	0
chr20	46414663	46415230	A549_Myers.89899	0	.	46414663	46415230	0	1	567	0
chr20	46422059	46432788	Rinn_00027835	0	+	46422059	46432788	0	5	241,310,161,325,2560	0,4978,6563,6825,8169
chr20	46422060	46432788	NR_026958	0	+	46422060	46432788	0	5	240,309,160,324,2559	0,4978,6563,6825,8169
chr20	46422080	46432775	Rinn_00028200	0	+	46422080	46432775	0	4	220,310,161,2547	0,4957,6542,8148
chr20	46422097	46432795	HIT000093744	0	+	46422097	46432795	0	5	203,309,157,327,2566	0,4941,6526,6785,8132
chr20	46422099	46432779	ENST00000416742	0	+	46422099	46432779	0	5	201,309,160,324,2550	0,4939,6524,6786,8130
chr20	46424646	46427822	B_cells_Cheung.199202	0	.	46424646	46427822	0	1	3176	0
chr20	46424656	46429874	B_Cells_Pritchard.3259463	0	-	46424656	46429874	0	2	1266,3885	0,1333
chr20	46427795	46432788	Rinn_00027870	0	+	46427795	46432788	0	3	362,161,2560	0,827,2433
chr20	46427796	46432794	HIT000027171	0	+	46427796	46432794	0	3	361,157,2568	0,827,2430
chr20	46427796	46432779	ENST00000433094	0	+	46427796	46432779	0	3	361,160,2550	0,827,2433
chr20	46428224	46433832	Rinn_00028201	0	+	46428224	46433832	0	2	559,3604	0,2004
chr20	46430499	46431613	B_cells_Cheung.199205	0	.	46430499	46431613	0	1	1114	0
chr20	46430537	46431272	HepG2_Caltech_ENCODE.39510	0	.	46430537	46431272	0	1	735	0
chr20	46430683	46433927	B_Cells_Pritchard.3259529	0	.	46430683	46433927	0	1	3244	0
chr20	46430827	46431481	HIT000388449	0	+	46430827	46431481	0	1	654	0
chr20	46431645	46433195	HepG2_Caltech_ENCODE.39512	0	.	46431645	46433195	0	1	1550	0
chr20	46431671	46433731	B_cells_Cheung.199206	0	.	46431671	46433731	0	1	2060	0
chr20	46431699	46432070	MCF7_Burge_Thompson.32658	0	.	46431699	46432070	0	1	371	0
chr20	46445472	46447045	ENST00000446280	0	-	46445472	46447045	0	2	148,256	0,1317
chr20	46448418	46448923	A549_Myers.89900	0	.	46448418	46448923	0	1	505	0
chr20	46456951	46457478	HepG2_Caltech_ENCODE.39513	0	.	46456951	46457478	0	1	527	0
chr20	46458295	46461781	HepG2_Caltech_ENCODE.39514	0	+	46458295	46461781	0	2	214,1759	0,1727
chr20	46465848	46468776	Rinn_00028425	0	-	46465848	46468776	0	2	24,2391	0,537
chr20	46514729	46515207	B_Cells_Pritchard.3259785	0	.	46514729	46515207	0	1	478	0
chr20	46515574	46516468	BT474_Burge_Thompson.35826	0	.	46515574	46516468	0	1	894	0
chr20	46516640	46517765	BT474_Burge_Thompson.35827	0	.	46516640	46517765	0	1	1125	0
chr20	46525247	46525935	B_Cells_Pritchard.3259835	0	.	46525247	46525935	0	1	688	0
chr20	46532874	46536826	pHIT000121315	0	+	46532874	46536826	0	2	265,185	0,3767
chr20	46532996	46540489	Rinn_00028202	0	+	46532996	46540489	0	2	143,6886	0,607
chr20	46533614	46540489	Rinn_00028426	0	-	46533614	46540489	0	2	846,5719	0,1156
chr20	46559796	46566793	Rinn_00028205	0	+	46559796	46566793	0	4	1158,3770,24,1283	0,1600,5466,5714
chr20	46559796	46566793	Rinn_00028207	0	+	46559796	46566793	0	4	1158,3770,197,943	0,1600,5761,6054
chr20	46565136	46565601	B_Cells_Pritchard.3259949	0	.	46565136	46565601	0	1	465	0
chr20	46565526	46565841	MCF7_Burge_Thompson.32660	0	.	46565526	46565841	0	1	315	0
chr20	46566128	46566494	MCF7_Burge_Thompson.32661	0	.	46566128	46566494	0	1	366	0
chr20	46649015	46649318	A549_Myers.89904	0	.	46649015	46649318	0	1	303	0
chr20	46657022	46657372	A549_Myers.89905	0	.	46657022	46657372	0	1	350	0
chr20	46671693	46672103	A549_Myers.89908	0	.	46671693	46672103	0	1	410	0
chr20	46947314	46948422	MCF7_Burge_Thompson.32664	0	.	46947314	46948422	0	1	1108	0
chr20	46948825	46949426	MCF7_Burge_Thompson.32665	0	.	46948825	46949426	0	1	601	0
chr20	46951679	46952447	REMC_LuminalBreast.100228	0	.	46951679	46952447	0	1	768	0
chr20	46962455	46964131	REMC_LuminalBreast.100233	0	.	46962455	46964131	0	1	1676	0
chr20	47094059	47094796	B_cells_Cheung.199229	0	.	47094059	47094796	0	1	737	0
chr20	47148011	47158079	REMC_LuminalBreast.100216	0	.	47148011	47158079	0	1	10068	0
chr20	47148746	47157442	B_cells_Cheung.199356	0	.	47148746	47157442	0	2	1490,6787	0,1909
chr20	47149608	47158053	H1_polyA+.118204	0	.	47149608	47158053	0	1	8445	0
chr20	47152140	47154779	BT474_Burge_Thompson.36070	0	.	47152140	47154779	0	1	2639	0
chr20	47152602	47154708	melanoma_Garraway_short_term_cultures.70886	0	.	47152602	47154708	0	1	2106	0
chr20	47152631	47153101	CD4_Plagnol_activated.66773	0	.	47152631	47153101	0	1	470	0
chr20	47152753	47153187	H9_polyA+.46601	0	.	47152753	47153187	0	1	434	0
chr20	47152795	47153295	CD4_Plagnol_resting.64844	0	.	47152795	47153295	0	1	500	0
chr20	47152816	47153211	A549_Myers.89953	0	.	47152816	47153211	0	1	395	0
chr20	47152900	47153397	brain_AmbionMAQC.45949	0	.	47152900	47153397	0	1	497	0
chr20	47153678	47154828	REMC_BreastStem.50422	0	.	47153678	47154828	0	1	1150	0
chr20	47158489	47161493	REMC_LuminalBreast.100217	0	.	47158489	47161493	0	1	3004	0
chr20	47158492	47159630	REMC_MyoepithelialBreast.93696	0	.	47158492	47159630	0	1	1138	0
chr20	47159532	47161857	H1_polyA+.118206	0	.	47159532	47161857	0	1	2325	0
chr20	47332286	47334639	NEC_from_H9.76832	0	.	47332286	47334639	0	1	2353	0
chr20	47332309	47334090	HeLa_Bartel_miR-1_12hr.31663	0	.	47332309	47334090	0	1	1781	0
chr20	47332463	47333911	MB435_Burge.44793	0	.	47332463	47333911	0	2	523,871	0,577
chr20	47332817	47334453	HeLa_Bartel_miR-155_12hr.33252	0	.	47332817	47334453	0	1	1636	0
chr20	47333031	47333996	HeLa_polyA-_Chen.19042	0	.	47333031	47333996	0	1	965	0
chr20	47334784	47338054	BT474_Burge_Thompson.36025	0	.	47334784	47338054	0	1	3270	0
chr20	47334834	47336721	HeLa_Bartel_miR-155_12hr.33260	0	.	47334834	47336721	0	1	1887	0
chr20	47335883	47336395	HME_Burge.41893	0	.	47335883	47336395	0	1	512	0
chr20	47335960	47336438	brain_AmbionMAQC.46005	0	.	47335960	47336438	0	1	478	0
chr20	47337025	47337447	kidney_Gilad.86470	0	.	47337025	47337447	0	1	422	0
chr20	47344114	47344752	REMC_LuminalBreast.100318	0	.	47344114	47344752	0	1	638	0
chr20	47345357	47345668	CD4_Plagnol_resting.64989	0	.	47345357	47345668	0	1	311	0
chr20	47347222	47347673	H1_polyA+.118169	0	.	47347222	47347673	0	1	451	0
chr20	47347302	47348247	B_Cells_Pritchard.3261573	0	.	47347302	47348247	0	1	945	0
chr20	47351076	47351805	REMC_MyoepithelialBreast.93704	0	.	47351076	47351805	0	1	729	0
chr20	47351156	47352456	REMC_LuminalBreast.100264	0	.	47351156	47352456	0	1	1300	0
chr20	47351217	47357630	REMC_BreastStem.51199	0	.	47351217	47357630	0	1	6413	0
chr20	47352770	47357731	REMC_LuminalBreast.100265	0	.	47352770	47357731	0	1	4961	0
chr20	47352948	47359617	REMC_MyoepithelialBreast.93706	0	.	47352948	47359617	0	1	6669	0
chr20	47357856	47361396	REMC_LuminalBreast.100266	0	.	47357856	47361396	0	1	3540	0
chr20	47358245	47366845	REMC_BreastStem.51200	0	.	47358245	47366845	0	1	8600	0
chr20	47361916	47364462	REMC_MyoepithelialBreast.93709	0	.	47361916	47364462	0	1	2546	0
chr20	47362264	47366096	REMC_LuminalBreast.100267	0	.	47362264	47366096	0	1	3832	0
chr20	47368133	47369052	A549_Myers.89957	0	.	47368133	47369052	0	1	919	0
chr20	47368330	47368985	brain_AmbionMAQC.45984	0	.	47368330	47368985	0	1	655	0
chr20	47533673	47534564	A549_Myers.89964	0	.	47533673	47534564	0	1	891	0
chr20	47618320	47621355	lymph_node_Burge.51399	0	+	47618320	47621355	0	2	247,199	0,2836
chr20	47620779	47621870	prostate_normal.60819	0	.	47620779	47621870	0	1	1091	0
chr20	47620886	47621870	H1_polyA+.118067	0	.	47620886	47621870	0	1	984	0
chr20	47621158	47621824	REMC_BreastStem.50471	0	.	47621158	47621824	0	1	666	0
chr20	47621160	47621870	MDAMB468_Thompson.25202	0	.	47621160	47621870	0	1	710	0
chr20	47822330	47822810	A549_Myers.89995	0	.	47822330	47822810	0	1	480	0
chr20	47835658	47836365	B_Cells_Pritchard.3263037	0	.	47835658	47836365	0	1	707	0
chr20	47835925	47836397	B_cells_Cheung.199321	0	.	47835925	47836397	0	1	472	0
chr20	47847215	47847767	B_cells_Cheung.199325	0	.	47847215	47847767	0	1	552	0
chr20	47861056	47861426	HeLa_polyA+_Chen.36503	0	.	47861056	47861426	0	1	370	0
chr20	47950940	47951859	melanoma_Garraway_short_term_cultures.70932	0	.	47950940	47951859	0	1	919	0
chr20	47950977	47952024	B_Cells_Pritchard.3263351	0	.	47950977	47952024	0	1	1047	0
chr20	47951121	47952001	REMC_BreastStem.50499	0	.	47951121	47952001	0	1	880	0
chr20	47951288	47951835	REMC_MyoepithelialBreast.93738	0	.	47951288	47951835	0	1	547	0
chr20	48004835	48005534	melanoma_Garraway_short_term_cultures.70942	0	.	48004835	48005534	0	1	699	0
chr20	48005109	48005518	IMR90_UCSD_REMC.50603	0	-	48005109	48005518	0	1	409	0
chr20	48005207	48005512	H1_rRNA-depleted_UCSD_REMC.89242	0	.	48005207	48005512	0	1	305	0
chr20	48011281	48017556	REMC_LuminalBreast.100472	0	.	48011281	48017556	0	1	6275	0
chr20	48014023	48016240	H1_polyA+.118151	0	.	48014023	48016240	0	1	2217	0
chr20	48014035	48017565	REMC_MyoepithelialBreast.93851	0	.	48014035	48017565	0	1	3530	0
chr20	48014237	48014870	B_cells_Cheung.199390	0	.	48014237	48014870	0	1	633	0
chr20	48014266	48016083	REMC_BreastStem.50585	0	.	48014266	48016083	0	1	1817	0
chr20	48014473	48017676	B_Cells_Pritchard.3263507	0	-	48014473	48017676	0	2	1689,1066	0,2137
chr20	48014946	48015347	B_cells_Cheung.199391	0	.	48014946	48015347	0	1	401	0
chr20	48017777	48021299	REMC_MyoepithelialBreast.93852	0	.	48017777	48021299	0	1	3522	0
chr20	48018768	48021315	REMC_BreastStem.50587	0	.	48018768	48021315	0	1	2547	0
chr20	48019803	48021088	B_cells_Cheung.199396	0	.	48019803	48021088	0	1	1285	0
chr20	48020532	48021097	BT474_Burge_Thompson.36093	0	.	48020532	48021097	0	1	565	0
chr20	48020549	48021259	B_Cells_Pritchard.3263521	0	.	48020549	48021259	0	1	710	0
chr20	48022841	48025226	REMC_MyoepithelialBreast.93854	0	.	48022841	48025226	0	1	2385	0
chr20	48022855	48024555	REMC_LuminalBreast.100474	0	.	48022855	48024555	0	1	1700	0
chr20	48028743	48029660	MIP101.71032	0	.	48028743	48029660	0	1	917	0
chr20	48028938	48029478	A549_Myers.90038	0	.	48028938	48029478	0	1	540	0
chr20	48030969	48031623	B_Cells_Pritchard.3263573	0	+	48030969	48031623	0	1	654	0
chr20	48040062	48040548	B_Cells_Pritchard.3263595	0	.	48040062	48040548	0	1	486	0
chr20	48055288	48056205	B_Cells_Pritchard.3263659	0	.	48055288	48056205	0	1	917	0
chr20	48055570	48056003	BT474_Burge_Thompson.36097	0	.	48055570	48056003	0	1	433	0
chr20	48059027	48059520	B_Cells_Pritchard.3263671	0	.	48059027	48059520	0	1	493	0
chr20	48064077	48064805	A549_Myers.90046	0	.	48064077	48064805	0	1	728	0
chr20	48064617	48065490	BT474_Burge_Thompson.36098	0	.	48064617	48065490	0	1	873	0
chr20	48064914	48065949	B_Cells_Pritchard.3263693	0	.	48064914	48065949	0	1	1035	0
chr20	48077519	48078210	A549_Myers.90062	0	.	48077519	48078210	0	1	691	0
chr20	48079311	48080305	A549_Myers.90064	0	.	48079311	48080305	0	1	994	0
chr20	48081171	48081655	A549_Myers.90065	0	.	48081171	48081655	0	1	484	0
chr20	48083447	48084900	REMC_LuminalBreast.100360	0	.	48083447	48084900	0	1	1453	0
chr20	48088545	48088953	A549_Myers.90067	0	.	48088545	48088953	0	1	408	0
chr20	48090658	48091448	Rinn_00028062	0	-	48090658	48091448	0	2	335,129	0,661
chr20	48090659	48091448	ENST00000431460	0	-	48090659	48091448	0	2	334,128	0,661
chr20	48090733	48091081	B_cells_Cheung.199404	0	.	48090733	48091081	0	1	348	0
chr20	48092561	48093071	A549_Myers.90068	0	.	48092561	48093071	0	1	510	0
chr20	48098225	48098637	A549_Myers.90070	0	.	48098225	48098637	0	1	412	0
chr20	48098405	48098879	B_Cells_Pritchard.3263819	0	.	48098405	48098879	0	1	474	0
chr20	48104086	48104467	A549_Myers.90071	0	.	48104086	48104467	0	1	381	0
chr20	48104748	48105252	A549_Myers.90072	0	.	48104748	48105252	0	1	504	0
chr20	48118419	48118888	A549_Myers.90074	0	.	48118419	48118888	0	1	469	0
chr20	48120997	48121302	B_Cells_Pritchard.3266091	0	-	48120997	48121302	0	1	305	0
chr20	48129708	48130018	B_cells_Cheung.199406	0	.	48129708	48130018	0	1	310	0
chr20	48205369	48206172	B_Cells_Pritchard.3264015	0	+	48205369	48206172	0	3	310,117,246	0,390,557
chr20	48206572	48209915	B_Cells_Pritchard.3264017	0	-	48206572	48209915	0	2	171,826	0,2517
chr20	48209101	48209955	B_cells_Cheung.199445	0	.	48209101	48209955	0	1	854	0
chr20	48210107	48210757	B_cells_Cheung.199446	0	.	48210107	48210757	0	1	650	0
chr20	48210209	48210735	H1_polyA+.118170	0	.	48210209	48210735	0	1	526	0
chr20	48210231	48210850	B_Cells_Pritchard.3264031	0	.	48210231	48210850	0	1	619	0
chr20	48222383	48223695	H1_polyA+.118176	0	.	48222383	48223695	0	1	1312	0
chr20	48222495	48226840	H1_polyA+.118178	0	+	48222495	48226840	0	3	237,829,616	0,371,3729
chr20	48222495	48223486	REMC_BreastStem.50835	0	.	48222495	48223486	0	1	991	0
chr20	48222506	48234326	prostate_normal.60875	0	-	48222506	48234326	0	2	772,36	0,11784
chr20	48222508	48223535	REMC_LuminalBreast.100385	0	.	48222508	48223535	0	1	1027	0
chr20	48222530	48223270	brain_AmbionMAQC.46052	0	.	48222530	48223270	0	1	740	0
chr20	48225998	48226453	HeLa_polyA+_Chen.36534	0	.	48225998	48226453	0	1	455	0
chr20	48227216	48228942	REMC_LuminalBreast.100387	0	.	48227216	48228942	0	1	1726	0
chr20	48227241	48228906	REMC_BreastStem.50837	0	.	48227241	48228906	0	1	1665	0
chr20	48229314	48229926	MCF7_Burge_Thompson.32744	0	.	48229314	48229926	0	1	612	0
chr20	48229433	48230144	REMC_LuminalBreast.100388	0	.	48229433	48230144	0	1	711	0
chr20	48234232	48236417	REMC_LuminalBreast.100424	0	.	48234232	48236417	0	1	2185	0
chr20	48234236	48237193	REMC_BreastStem.50840	0	-	48234236	48237193	0	2	2128,237	0,2720
chr20	48234267	48235078	REMC_MyoepithelialBreast.93792	0	.	48234267	48235078	0	1	811	0
chr20	48234453	48238089	BT474_Burge_Thompson.36130	0	.	48234453	48238089	0	1	3636	0
chr20	48234453	48238089	BT474_Burge_Thompson.36129	0	-	48234453	48238089	0	2	1911,1133	0,2503
chr20	48234543	48239730	MCF7_Burge_Thompson.32745	0	.	48234543	48239730	0	1	5187	0
chr20	48234546	48236294	HIT000049113	0	+	48234546	48236294	0	1	1748	0
chr20	48235262	48236534	REMC_MyoepithelialBreast.93793	0	.	48235262	48236534	0	1	1272	0
chr20	48235347	48238321	BT20_Thompson.22751	0	-	48235347	48238321	0	2	1017,1365	0,1609
chr20	48235347	48236878	BT20_Thompson.22750	0	.	48235347	48236878	0	1	1531	0
chr20	48235515	48236366	MDAMB468_Thompson.25231	0	.	48235515	48236366	0	1	851	0
chr20	48235525	48236365	brain_AmbionMAQC.46053	0	.	48235525	48236365	0	1	840	0
chr20	48235866	48236402	CD4_Plagnol_activated.66914	0	.	48235866	48236402	0	1	536	0
chr20	48235964	48237155	MCF7_Burge_Thompson.32746	0	-	48235964	48237155	0	2	400,199	0,992
chr20	48238483	48240251	BT20_Thompson.22752	0	-	48238483	48240251	0	2	88,862	0,906
chr20	48244080	48244782	A549_Myers.90127	0	.	48244080	48244782	0	1	702	0
chr20	48248109	48263438	REMC_LuminalBreast.100391	0	.	48248109	48263438	0	1	15329	0
chr20	48248148	48248752	MCF7_Burge_Thompson.32750	0	.	48248148	48248752	0	1	604	0
chr20	48264812	48265703	REMC_BreastStem.50842	0	.	48264812	48265703	0	1	891	0
chr20	48264831	48265890	REMC_LuminalBreast.100392	0	.	48264831	48265890	0	1	1059	0
chr20	48266262	48266607	B_Cells_Pritchard.3264225	0	.	48266262	48266607	0	1	345	0
chr20	48266706	48270218	REMC_MyoepithelialBreast.93830	0	.	48266706	48270218	0	1	3512	0
chr20	48269187	48270219	REMC_LuminalBreast.100394	0	.	48269187	48270219	0	1	1032	0
chr20	48270452	48272997	REMC_LuminalBreast.100395	0	.	48270452	48272997	0	1	2545	0
chr20	48273088	48275470	REMC_LuminalBreast.100396	0	.	48273088	48275470	0	1	2382	0
chr20	48273330	48275329	REMC_BreastStem.50859	0	.	48273330	48275329	0	1	1999	0
chr20	48273759	48275280	REMC_MyoepithelialBreast.93809	0	.	48273759	48275280	0	1	1521	0
chr20	48275524	48277493	REMC_BreastStem.50860	0	.	48275524	48277493	0	1	1969	0
chr20	48275620	48277418	REMC_LuminalBreast.100397	0	.	48275620	48277418	0	1	1798	0
chr20	48275642	48276775	REMC_MyoepithelialBreast.93810	0	.	48275642	48276775	0	1	1133	0
chr20	48277617	48279778	REMC_LuminalBreast.100398	0	.	48277617	48279778	0	1	2161	0
chr20	48278069	48279427	REMC_BreastStem.50861	0	.	48278069	48279427	0	1	1358	0
chr20	48280661	48282204	REMC_BreastStem.50843	0	.	48280661	48282204	0	1	1543	0
chr20	48280670	48282214	REMC_LuminalBreast.100400	0	.	48280670	48282214	0	1	1544	0
chr20	48280840	48281860	REMC_MyoepithelialBreast.93808	0	.	48280840	48281860	0	1	1020	0
chr20	48282314	48283226	REMC_MyoepithelialBreast.93812	0	.	48282314	48283226	0	1	912	0
chr20	48282372	48283120	REMC_LuminalBreast.100401	0	.	48282372	48283120	0	1	748	0
chr20	48282382	48282928	BT474_Burge_Thompson.36136	0	.	48282382	48282928	0	1	546	0
chr20	48283899	48284566	B_Cells_Pritchard.3264291	0	.	48283899	48284566	0	1	667	0
chr20	48283931	48284708	BT474_Burge_Thompson.36137	0	.	48283931	48284708	0	1	777	0
chr20	48283954	48285500	REMC_MyoepithelialBreast.93813	0	.	48283954	48285500	0	1	1546	0
chr20	48283981	48285521	REMC_LuminalBreast.100402	0	.	48283981	48285521	0	1	1540	0
chr20	48287018	48287570	REMC_LuminalBreast.100404	0	.	48287018	48287570	0	1	552	0
chr20	48287683	48288633	REMC_BreastStem.50863	0	.	48287683	48288633	0	1	950	0
chr20	48287684	48289257	REMC_LuminalBreast.100405	0	.	48287684	48289257	0	1	1573	0
chr20	48293567	48295761	REMC_MyoepithelialBreast.93816	0	.	48293567	48295761	0	1	2194	0
chr20	48294360	48294767	A549_Myers.90114	0	.	48294360	48294767	0	1	407	0
chr20	48296888	48308408	REMC_LuminalBreast.100407	0	+	48296888	48308408	0	3	809,931,107	0,5732,11413
chr20	48297586	48317039	HIT000300191	0	+	48297586	48317039	0	6	111,133,212,109,122,1728	0,220,5753,10715,16559,17725
chr20	48298069	48299709	REMC_LuminalBreast.100408	0	.	48298069	48299709	0	1	1640	0
chr20	48301030	48301414	A549_Myers.90117	0	.	48301030	48301414	0	1	384	0
chr20	48303339	48317067	REMC_BreastStem.50864	0	+	48303339	48317067	0	3	212,109,1756	0,4962,11972
chr20	48304832	48306372	REMC_LuminalBreast.100410	0	.	48304832	48306372	0	1	1540	0
chr20	48310829	48311254	A549_Myers.90131	0	.	48310829	48311254	0	1	425	0
chr20	48313193	48317036	REMC_LuminalBreast.100412	0	.	48313193	48317036	0	1	3843	0
chr20	48314912	48317067	REMC_BreastStem.50865	0	.	48314912	48317067	0	1	2155	0
chr20	48315163	48317071	REMC_MyoepithelialBreast.93817	0	.	48315163	48317071	0	1	1908	0
chr20	48317351	48330213	MeWo_Garraway.37580	0	+	48317351	48330213	0	4	256,90,123,2093	0,8238,10083,10769
chr20	48317415	48330150	MeI_Garraway.18161	0	+	48317415	48330150	0	4	192,92,123,2030	0,8172,10019,10705
chr20	48317429	48329739	ENST00000425497	0	+	48317429	48329739	0	4	178,90,123,1619	0,8160,10005,10691
chr20	48317441	48328775	HIT000426058	0	+	48317441	48328775	0	4	166,90,123,655	0,8148,9993,10679
chr20	48317442	48328371	ENST00000445003	0	+	48317442	48328371	0	3	165,123,251	0,9992,10678
chr20	48317458	48329437	prostate_normal.60881	0	+	48317458	48329437	0	4	149,90,128,2003	0,8131,8748,9976
chr20	48317627	48318098	A549_Myers.90132	0	.	48317627	48318098	0	1	471	0
chr20	48324739	48325342	A549_Myers.90134	0	.	48324739	48325342	0	1	603	0
chr20	48325588	48331136	melanoma_Garraway_short_term_cultures.70966	0	+	48325588	48331136	0	3	91,123,3016	0,1846,2532
chr20	48325590	48328285	breast_Burge.41579	0	+	48325590	48328285	0	3	89,123,165	0,1844,2530
chr20	48326260	48328981	ENST00000422459	0	+	48326260	48328981	0	3	74,123,861	0,1174,1860
chr20	48326263	48328423	adipose_Burge.39811	0	+	48326263	48328423	0	3	71,123,303	0,1171,1857
chr20	48326263	48329408	liver_polyA+.133717	0	+	48326263	48329408	0	3	71,123,1288	0,1171,1857
chr20	48327436	48328328	colon_Burge.38964	0	+	48327436	48328328	0	2	121,208	0,684
chr20	48327437	48330054	REMC_LuminalBreast.100413	0	+	48327437	48330054	0	2	120,1934	0,683
chr20	48327440	48328358	testes_Burge.54612	0	+	48327440	48328358	0	2	117,238	0,680
chr20	48327452	48328350	heart_Burge.29415	0	+	48327452	48328350	0	2	105,230	0,668
chr20	48327452	48330051	MDAMB468_Thompson.25243	0	+	48327452	48330051	0	2	105,1931	0,668
chr20	48327476	48328485	MB435_Burge.44848	0	+	48327476	48328485	0	2	81,365	0,644
chr20	48327477	48328359	ENST00000421019	0	+	48327477	48328359	0	2	447,239	0,643
chr20	48328018	48329410	prostate_carcinoma.101691	0	.	48328018	48329410	0	1	1392	0
chr20	48328953	48329271	A549_Myers.90136	0	.	48328953	48329271	0	1	318	0
chr20	48329564	48331083	prostate_normal.60882	0	.	48329564	48331083	0	1	1519	0
chr20	48329578	48330259	liver_polyA+.133715	0	.	48329578	48330259	0	1	681	0
chr20	48329742	48330132	prostate_carcinoma.101693	0	.	48329742	48330132	0	1	390	0
chr20	48333083	48334242	prostate_normal.60883	0	.	48333083	48334242	0	1	1159	0
chr20	48335611	48336038	liver_polyA+.133722	0	.	48335611	48336038	0	1	427	0
chr20	48338084	48338601	A549_Myers.90143	0	.	48338084	48338601	0	1	517	0
chr20	48343019	48344312	prostate_carcinoma.101695	0	.	48343019	48344312	0	1	1293	0
chr20	48343020	48345249	BT20_Thompson.22758	0	.	48343020	48345249	0	1	2229	0
chr20	48343021	48345078	HepG2_Caltech_ENCODE.39581	0	.	48343021	48345078	0	1	2057	0
chr20	48343029	48343608	K562.46600	0	.	48343029	48343608	0	1	579	0
chr20	48343205	48346438	MIP101.71049	0	.	48343205	48346438	0	1	3233	0
chr20	48343357	48344429	liver_polyA+.133723	0	.	48343357	48344429	0	1	1072	0
chr20	48343889	48344226	kidney_Gilad.86563	0	.	48343889	48344226	0	1	337	0
chr20	48344555	48345156	prostate_normal.60885	0	.	48344555	48345156	0	1	601	0
chr20	48345181	48346311	HepG2_Caltech_ENCODE.39582	0	.	48345181	48346311	0	1	1130	0
chr20	48345588	48347007	BT20_Thompson.22759	0	.	48345588	48347007	0	1	1419	0
chr20	48345854	48346576	prostate_carcinoma.101697	0	.	48345854	48346576	0	1	722	0
chr20	48346224	48346638	A549_Myers.90147	0	.	48346224	48346638	0	1	414	0
chr20	48346407	48347545	HepG2_Caltech_ENCODE.39579	0	.	48346407	48347545	0	1	1138	0
chr20	48346519	48346820	liver_polyA+.133725	0	.	48346519	48346820	0	1	301	0
chr20	48346545	48347752	MIP101.71050	0	.	48346545	48347752	0	1	1207	0
chr20	48349647	48352957	REMC_BreastStem.50545	0	.	48349647	48352957	0	1	3310	0
chr20	48350010	48378304	REMC_BreastStem.50546	0	-	48350010	48378304	0	3	2850,322,91	0,13989,28203
chr20	48350492	48352804	REMC_LuminalBreast.100414	0	.	48350492	48352804	0	1	2312	0
chr20	48350574	48352858	REMC_MyoepithelialBreast.93818	0	.	48350574	48352858	0	1	2284	0
chr20	48350854	48352489	HeLa_polyA+_Chen.36546	0	.	48350854	48352489	0	1	1635	0
chr20	48351076	48352865	liver_polyA+.133732	0	+	48351076	48352865	0	2	136,1541	0,248
chr20	48351230	48352865	liver_polyA+.133733	0	.	48351230	48352865	0	1	1635	0
chr20	48353251	48354515	HepG2_Caltech_ENCODE.39585	0	.	48353251	48354515	0	1	1264	0
chr20	48353405	48354007	liver_polyA+.133731	0	.	48353405	48354007	0	1	602	0
chr20	48353405	48353894	kidney_Gilad.86567	0	.	48353405	48353894	0	1	489	0
chr20	48354128	48354986	A549_Myers.90159	0	.	48354128	48354986	0	1	858	0
chr20	48356128	48356825	liver_polyA+.133736	0	.	48356128	48356825	0	1	697	0
chr20	48358152	48371441	HepG2_Caltech_ENCODE.39584	0	+	48358152	48371441	0	4	4222,112,3279,1417	0,4340,5091,11872
chr20	48358362	48359659	A549_Myers.90161	0	.	48358362	48359659	0	1	1297	0
chr20	48359037	48360333	melanoma_Garraway_short_term_cultures.70967	0	.	48359037	48360333	0	1	1296	0
chr20	48359085	48359980	prostate_carcinoma.101699	0	.	48359085	48359980	0	1	895	0
chr20	48359509	48359886	HeLa_polyA+_Chen.36548	0	.	48359509	48359886	0	1	377	0
chr20	48359726	48361696	A549_Myers.90162	0	.	48359726	48361696	0	1	1970	0
chr20	48360038	48365215	HeLa_polyA+_Chen.36543	0	.	48360038	48365215	0	1	5177	0
chr20	48360065	48361650	MDAMB231_Thompson.22795	0	.	48360065	48361650	0	1	1585	0
chr20	48360286	48364543	prostate_normal.60886	0	+	48360286	48364543	0	3	135,725,1343	0,1363,2914
chr20	48360396	48364866	REMC_LuminalBreast.100415	0	.	48360396	48364866	0	1	4470	0
chr20	48360396	48364866	REMC_LuminalBreast.100416	0	+	48360396	48364866	0	2	1863,1623	0,2847
chr20	48360638	48371286	HIT000095635	0	-	48360638	48371286	0	3	555,1443,268	0,2219,10380
chr20	48360654	48371286	ENST00000441214	0	-	48360654	48371286	0	3	539,1443,268	0,2203,10364
chr20	48360790	48365432	melanoma_Garraway_short_term_cultures.70968	0	.	48360790	48365432	0	1	4642	0
chr20	48361405	48365353	BT20_Thompson.22761	0	.	48361405	48365353	0	1	3948	0
chr20	48361497	48366522	HepG2_Caltech_ENCODE.39583	0	.	48361497	48366522	0	1	5025	0
chr20	48361649	48362713	prostate_normal.60887	0	.	48361649	48362713	0	1	1064	0
chr20	48361721	48363026	liver_polyA+.133741	0	.	48361721	48363026	0	1	1305	0
chr20	48361752	48364541	MDAMB231_Thompson.22796	0	.	48361752	48364541	0	1	2789	0
chr20	48362447	48365050	MDAMB468_Thompson.25245	0	.	48362447	48365050	0	1	2603	0
chr20	48362565	48364752	BT474_Burge_Thompson.36138	0	.	48362565	48364752	0	1	2187	0
chr20	48362799	48365401	A549_Myers.90163	0	.	48362799	48365401	0	1	2602	0
chr20	48362868	48365006	MCF7_Burge_Thompson.32754	0	.	48362868	48365006	0	1	2138	0
chr20	48362881	48364797	MCF10A_Thompson.22019	0	.	48362881	48364797	0	1	1916	0
chr20	48363045	48366180	MIP101.71052	0	.	48363045	48366180	0	1	3135	0
chr20	48363067	48365414	MeWo_Garraway.37579	0	.	48363067	48365414	0	1	2347	0
chr20	48363081	48364475	REMC_MyoepithelialBreast.93820	0	.	48363081	48364475	0	1	1394	0
chr20	48363094	48364830	T47D_Burge_Thompson.29991	0	.	48363094	48364830	0	1	1736	0
chr20	48363118	48365134	liver_polyA+.133742	0	.	48363118	48365134	0	1	2016	0
chr20	48363212	48364159	B_Cells_Pritchard.3264537	0	.	48363212	48364159	0	1	947	0
chr20	48363302	48364536	K562.46601	0	.	48363302	48364536	0	1	1234	0
chr20	48363316	48363744	NEC_from_H9.76906	0	.	48363316	48363744	0	1	428	0
chr20	48366767	48371203	REMC_LuminalBreast.100418	0	.	48366767	48371203	0	1	4436	0
chr20	48369308	48371550	REMC_MyoepithelialBreast.93822	0	.	48369308	48371550	0	1	2242	0
chr20	48369377	48371324	BT20_Thompson.22757	0	.	48369377	48371324	0	1	1947	0
chr20	48369432	48371429	prostate_carcinoma.101703	0	.	48369432	48371429	0	1	1997	0
chr20	48370036	48371274	prostate_normal.60891	0	.	48370036	48371274	0	1	1238	0
chr20	48370075	48371402	HeLa_polyA+_Chen.36540	0	.	48370075	48371402	0	1	1327	0
chr20	48370371	48371067	A549_Myers.90154	0	.	48370371	48371067	0	1	696	0
chr20	48370384	48371063	H1_polyA+.118183	0	.	48370384	48371063	0	1	679	0
chr20	48379917	48380796	MCF7_Burge_Thompson.32755	0	.	48379917	48380796	0	1	879	0
chr20	48379917	48380712	BT474_Burge_Thompson.36139	0	.	48379917	48380712	0	1	795	0
chr20	48380212	48380720	ZR751_Thompson.24782	0	.	48380212	48380720	0	1	508	0
chr20	48380258	48380698	B_Cells_Pritchard.3264599	0	.	48380258	48380698	0	1	440	0
chr20	48383325	48384040	BT474_Burge_Thompson.36140	0	.	48383325	48384040	0	1	715	0
chr20	48393364	48394267	BT474_Burge_Thompson.36141	0	.	48393364	48394267	0	1	903	0
chr20	48413545	48413889	A549_Myers.90170	0	.	48413545	48413889	0	1	344	0
chr20	48417081	48418932	HepG2_Caltech_ENCODE.39587	0	.	48417081	48418932	0	1	1851	0
chr20	48419307	48419845	A549_Myers.90171	0	.	48419307	48419845	0	1	538	0
chr20	48428260	48428891	REMC_MyoepithelialBreast.93823	0	.	48428260	48428891	0	1	631	0
chr20	48435629	48436420	MIP101.71053	0	.	48435629	48436420	0	1	791	0
chr20	48440942	48441268	A549_Myers.90175	0	.	48440942	48441268	0	1	326	0
chr20	48449510	48450085	A549_Myers.90177	0	.	48449510	48450085	0	1	575	0
chr20	48465769	48468775	REMC_MyoepithelialBreast.93824	0	.	48465769	48468775	0	1	3006	0
chr20	48468985	48471032	REMC_MyoepithelialBreast.93825	0	.	48468985	48471032	0	1	2047	0
chr20	48480629	48485143	khalil_1274	0	.	48480629	48485143	0	5	264,248,339,272,141	0,607,2289,2933,4373
chr20	48481138	48481599	A549_Myers.90182	0	.	48481138	48481599	0	1	461	0
chr20	48497769	48498095	MCF7_Burge_Thompson.32756	0	.	48497769	48498095	0	1	326	0
chr20	48500984	48501298	A549_Myers.90183	0	.	48500984	48501298	0	1	314	0
chr20	48501007	48502384	HepG2_Caltech_ENCODE.39589	0	.	48501007	48502384	0	1	1377	0
chr20	48502501	48503673	HepG2_Caltech_ENCODE.39590	0	.	48502501	48503673	0	1	1172	0
chr20	48505361	48507448	HepG2_Caltech_ENCODE.39592	0	.	48505361	48507448	0	1	2087	0
chr20	48505762	48506460	B_Cells_Pritchard.3264951	0	.	48505762	48506460	0	1	698	0
chr20	48506190	48506534	B_cells_Cheung.199467	0	.	48506190	48506534	0	1	344	0
chr20	48509067	48509482	BT474_Burge_Thompson.36143	0	.	48509067	48509482	0	1	415	0
chr20	48517985	48518311	B_Cells_Pritchard.3265003	0	-	48517985	48518311	0	1	326	0
chr20	48528141	48529027	B_Cells_Pritchard.3265093	0	+	48528141	48529027	0	1	886	0
chr20	48528196	48529016	B_cells_Cheung.199473	0	.	48528196	48529016	0	1	820	0
chr20	48744469	48745136	B_Cells_Pritchard.3265789	0	.	48744469	48745136	0	1	667	0
chr20	48749384	48750814	REMC_MyoepithelialBreast.93836	0	.	48749384	48750814	0	1	1430	0
chr20	48753321	48764114	REMC_BreastStem.50781	0	+	48753321	48764114	0	2	450,314	0,10479
chr20	48810395	48811161	REMC_LuminalBreast.100447	0	.	48810395	48811161	0	1	766	0
chr20	48810521	48811031	REMC_MyoepithelialBreast.93840	0	.	48810521	48811031	0	1	510	0
chr20	48840005	48841318	MCF7_Burge_Thompson.32837	0	.	48840005	48841318	0	1	1313	0
chr20	48840553	48840977	A549_Myers.90223	0	.	48840553	48840977	0	1	424	0
chr20	48928222	48932615	ZR751_Thompson.24793	0	.	48928222	48932615	0	1	4393	0
chr20	48928645	48931436	brain_AmbionMAQC.46129	0	.	48928645	48931436	0	1	2791	0
chr20	48929286	48931754	MDAMB468_Thompson.25254	0	.	48929286	48931754	0	1	2468	0
chr20	48929308	48931652	MCF10A_Thompson.22029	0	.	48929308	48931652	0	1	2344	0
chr20	48929310	48931109	BT474_Burge_Thompson.36176	0	.	48929310	48931109	0	1	1799	0
chr20	48929346	48930839	H9_polyA+.46684	0	.	48929346	48930839	0	1	1493	0
chr20	48929432	48930546	CD4_Snyder.76047	0	.	48929432	48930546	0	1	1114	0
chr20	48929435	48931763	T47D_Burge_Thompson.30069	0	.	48929435	48931763	0	1	2328	0
chr20	48929463	48931579	prostate_normal.60916	0	.	48929463	48931579	0	1	2116	0
chr20	48929464	48931601	MDAMB231_Thompson.22805	0	.	48929464	48931601	0	1	2137	0
chr20	48929481	48931225	MCF7_Burge_Thompson.32839	0	.	48929481	48931225	0	1	1744	0
chr20	48930793	48931533	melanoma_Garraway_short_term_cultures.71010	0	.	48930793	48931533	0	1	740	0
chr20	48930917	48931747	H9_polyA+.46685	0	.	48930917	48931747	0	1	830	0
chr20	48935478	48936542	melanoma_Garraway_short_term_cultures.71012	0	.	48935478	48936542	0	1	1064	0
chr20	48935575	48936952	B_cells_Cheung.200656	0	.	48935575	48936952	0	1	1377	0
chr20	48935627	48936919	H1_polyA+.118509	0	.	48935627	48936919	0	1	1292	0
chr20	48935655	48937045	REMC_BreastStem.50578	0	.	48935655	48937045	0	1	1390	0
chr20	48937222	48938037	H1_polyA+.118510	0	.	48937222	48938037	0	1	815	0
chr20	48937478	48938028	melanoma_Garraway_short_term_cultures.71013	0	.	48937478	48938028	0	1	550	0
chr20	49037567	49038410	BT474_Burge_Thompson.36183	0	.	49037567	49038410	0	1	843	0
chr20	49038908	49039809	BT474_Burge_Thompson.36184	0	.	49038908	49039809	0	1	901	0
chr20	49039015	49040023	B_Cells_Pritchard.3266413	0	.	49039015	49040023	0	1	1008	0
chr20	49039130	49039506	A549_Myers.90245	0	.	49039130	49039506	0	1	376	0
chr20	49039221	49039582	MCF7_Burge_Thompson.32870	0	.	49039221	49039582	0	1	361	0
chr20	49090218	49092156	BT474_Burge_Thompson.36190	0	.	49090218	49092156	0	1	1938	0
chr20	49090630	49090988	B_Cells_Pritchard.3266609	0	.	49090630	49090988	0	1	358	0
chr20	49190396	49191908	prostate_carcinoma.101770	0	.	49190396	49191908	0	1	1512	0
chr20	49271547	49271901	A549_Myers.90278	0	.	49271547	49271901	0	1	354	0
chr20	49304004	49305040	BT474_Burge_Thompson.36195	0	.	49304004	49305040	0	1	1036	0
chr20	49356664	49357223	A549_Myers.90280	0	.	49356664	49357223	0	1	559	0
chr20	49368240	49372218	BT474_Burge_Thompson.36201	0	-	49368240	49372218	0	2	180,440	0,3538
chr20	49369680	49370864	BT474_Burge_Thompson.36204	0	.	49369680	49370864	0	1	1184	0
chr20	49371648	49372218	BT474_Burge_Thompson.36200	0	.	49371648	49372218	0	1	570	0
chr20	49371812	49372221	A549_Myers.90282	0	.	49371812	49372221	0	1	409	0
chr20	49372350	49374643	BT474_Burge_Thompson.36205	0	.	49372350	49374643	0	1	2293	0
chr20	49382805	49386055	melanoma_Garraway_short_term_cultures.71056	0	.	49382805	49386055	0	1	3250	0
chr20	49382858	49384936	REMC_LuminalBreast.100459	0	.	49382858	49384936	0	1	2078	0
chr20	49384170	49385710	REMC_MyoepithelialBreast.93867	0	.	49384170	49385710	0	1	1540	0
chr20	49384272	49385226	REMC_BreastStem.50594	0	.	49384272	49385226	0	1	954	0
chr20	49392170	49393889	melanoma_Garraway_short_term_cultures.71059	0	.	49392170	49393889	0	1	1719	0
chr20	49392907	49393969	REMC_BreastStem.50596	0	.	49392907	49393969	0	1	1062	0
chr20	49393109	49393874	BT474_Burge_Thompson.36209	0	.	49393109	49393874	0	1	765	0
chr20	49393141	49395061	REMC_MyoepithelialBreast.93871	0	.	49393141	49395061	0	1	1920	0
chr20	49393270	49396925	REMC_LuminalBreast.100461	0	.	49393270	49396925	0	1	3655	0
chr20	49394049	49396363	REMC_BreastStem.50597	0	.	49394049	49396363	0	1	2314	0
chr20	49395011	49396305	melanoma_Garraway_short_term_cultures.71061	0	.	49395011	49396305	0	1	1294	0
chr20	49395247	49398383	MCF10A_Thompson.22039	0	.	49395247	49398383	0	1	3136	0
chr20	49395259	49396353	REMC_MyoepithelialBreast.93872	0	.	49395259	49396353	0	1	1094	0
chr20	49396411	49398566	melanoma_Garraway_short_term_cultures.71062	0	.	49396411	49398566	0	1	2155	0
chr20	49396451	49397723	HeLa_polyA+_Chen.36570	0	.	49396451	49397723	0	1	1272	0
chr20	49396459	49407334	REMC_MyoepithelialBreast.93873	0	-	49396459	49407334	0	2	2494,1268	0,9607
chr20	49396459	49398964	REMC_MyoepithelialBreast.93874	0	.	49396459	49398964	0	1	2505	0
chr20	49396525	49397235	A549_Myers.90286	0	.	49396525	49397235	0	1	710	0
chr20	49396666	49399178	REMC_BreastStem.50598	0	.	49396666	49399178	0	1	2512	0
chr20	49396796	49398462	MeWo_Garraway.37610	0	.	49396796	49398462	0	1	1666	0
chr20	49396862	49397328	B_cells_Cheung.199561	0	.	49396862	49397328	0	1	466	0
chr20	49397031	49398933	REMC_LuminalBreast.100462	0	.	49397031	49398933	0	1	1902	0
chr20	49397060	49397511	B_Cells_Pritchard.3267333	0	.	49397060	49397511	0	1	451	0
chr20	49397404	49397706	A549_Myers.90285	0	.	49397404	49397706	0	1	302	0
chr20	49400651	49402074	REMC_BreastStem.50599	0	.	49400651	49402074	0	1	1423	0
chr20	49401534	49402694	REMC_MyoepithelialBreast.93876	0	.	49401534	49402694	0	1	1160	0
chr20	49404117	49405126	B_Cells_Pritchard.3267365	0	.	49404117	49405126	0	1	1009	0
chr20	49404555	49407334	REMC_MyoepithelialBreast.93875	0	.	49404555	49407334	0	1	2779	0
chr20	49404965	49406555	REMC_BreastStem.50600	0	.	49404965	49406555	0	1	1590	0
chr20	49406003	49406612	melanoma_Garraway_short_term_cultures.71065	0	.	49406003	49406612	0	1	609	0
chr20	49406940	49407810	B_Cells_Pritchard.3267375	0	.	49406940	49407810	0	1	870	0
chr20	49406971	49407571	melanoma_Garraway_short_term_cultures.71066	0	.	49406971	49407571	0	1	600	0
chr20	49407445	49409534	REMC_MyoepithelialBreast.93878	0	.	49407445	49409534	0	1	2089	0
chr20	49408120	49409549	REMC_BreastStem.50601	0	.	49408120	49409549	0	1	1429	0
chr20	49408133	49409456	REMC_LuminalBreast.100463	0	.	49408133	49409456	0	1	1323	0
chr20	49414774	49416758	REMC_MyoepithelialBreast.93881	0	.	49414774	49416758	0	1	1984	0
chr20	49414838	49416341	REMC_BreastStem.50602	0	.	49414838	49416341	0	1	1503	0
chr20	49415604	49417698	REMC_LuminalBreast.100465	0	.	49415604	49417698	0	1	2094	0
chr20	49415963	49416457	A549_Myers.90291	0	.	49415963	49416457	0	1	494	0
chr20	49416845	49419459	REMC_MyoepithelialBreast.93882	0	.	49416845	49419459	0	1	2614	0
chr20	49417236	49419301	REMC_BreastStem.50603	0	.	49417236	49419301	0	1	2065	0
chr20	49417939	49418952	REMC_LuminalBreast.100466	0	.	49417939	49418952	0	1	1013	0
chr20	49419550	49419907	BT474_Burge_Thompson.36212	0	.	49419550	49419907	0	1	357	0
chr20	49419561	49419898	A549_Myers.90294	0	.	49419561	49419898	0	1	337	0
chr20	49423544	49424023	A549_Myers.90295	0	.	49423544	49424023	0	1	479	0
chr20	49423677	49425485	REMC_BreastStem.50607	0	.	49423677	49425485	0	1	1808	0
chr20	49423789	49426467	REMC_MyoepithelialBreast.93884	0	.	49423789	49426467	0	1	2678	0
chr20	49425368	49426052	melanoma_Garraway_short_term_cultures.71069	0	.	49425368	49426052	0	1	684	0
chr20	49425582	49428539	REMC_BreastStem.50608	0	.	49425582	49428539	0	1	2957	0
chr20	49426096	49427200	CD4_Plagnol_resting.64978	0	.	49426096	49427200	0	1	1104	0
chr20	49426134	49427176	B_cells_Cheung.199563	0	.	49426134	49427176	0	1	1042	0
chr20	49426139	49427205	melanoma_Garraway_short_term_cultures.71070	0	.	49426139	49427205	0	1	1066	0
chr20	49426479	49426953	BT474_Burge_Thompson.36216	0	.	49426479	49426953	0	1	474	0
chr20	49426807	49427184	CD4_Plagnol_activated.66969	0	.	49426807	49427184	0	1	377	0
chr20	49427274	49429295	melanoma_Garraway_short_term_cultures.71071	0	.	49427274	49429295	0	1	2021	0
chr20	49428097	49428803	BT474_Burge_Thompson.36217	0	.	49428097	49428803	0	1	706	0
chr20	49432132	49432829	BT474_Burge_Thompson.36219	0	.	49432132	49432829	0	1	697	0
chr20	49433560	49435022	melanoma_Garraway_short_term_cultures.71075	0	.	49433560	49435022	0	1	1462	0
chr20	49433600	49434178	B_Cells_Pritchard.3267447	0	.	49433600	49434178	0	1	578	0
chr20	49433632	49434317	BT474_Burge_Thompson.36220	0	.	49433632	49434317	0	1	685	0
chr20	49434054	49436245	CD4_Plagnol_activated.66973	0	.	49434054	49436245	0	1	2191	0
chr20	49620839	49622602	REMC_LuminalBreast.100477	0	.	49620839	49622602	0	1	1763	0
chr20	49621984	49622785	MCF7_Burge_Thompson.32875	0	.	49621984	49622785	0	1	801	0
chr20	49623431	49625389	MCF7_Burge_Thompson.32876	0	.	49623431	49625389	0	1	1958	0
chr20	49623445	49624578	prostate_carcinoma.101807	0	.	49623445	49624578	0	1	1133	0
chr20	49637087	49639227	REMC_BreastStem.50612	0	.	49637087	49639227	0	1	2140	0
chr20	49640325	49641097	REMC_LuminalBreast.100482	0	.	49640325	49641097	0	1	772	0
chr20	49640538	49642975	brain_AmbionMAQC.46073	0	.	49640538	49642975	0	1	2437	0
chr20	49642869	49645569	REMC_LuminalBreast.100484	0	.	49642869	49645569	0	1	2700	0
chr20	49643357	49643837	BT474_Burge_Thompson.36417	0	.	49643357	49643837	0	1	480	0
chr20	49643366	49643820	prostate_normal.60955	0	.	49643366	49643820	0	1	454	0
chr20	49830373	49832105	H1_polyA+.118967	0	.	49830373	49832105	0	1	1732	0
chr20	50284879	50285778	BT474_Burge_Thompson.36345	0	.	50284879	50285778	0	1	899	0
chr20	50295709	50296108	BT474_Burge_Thompson.36346	0	.	50295709	50296108	0	1	399	0
chr20	50318987	50319937	K562.46683	0	.	50318987	50319937	0	1	950	0
chr20	50610347	50611280	BT474_Burge_Thompson.36356	0	.	50610347	50611280	0	1	933	0
chr20	50658461	50661149	K562.46687	0	.	50658461	50661149	0	1	2688	0
chr20	50660681	50661194	BT474_Burge_Thompson.36357	0	.	50660681	50661194	0	1	513	0
chr20	50716695	50717660	melanoma_Garraway_short_term_cultures.71170	0	+	50716695	50717660	0	2	28,583	0,382
chr20	50716890	50718014	K562.46692	0	.	50716890	50718014	0	1	1124	0
chr20	50834168	50834961	BT474_Burge_Thompson.36365	0	.	50834168	50834961	0	1	793	0
chr20	51004542	51009876	REMC_MyoepithelialBreast.94118	0	-	51004542	51009876	0	2	1656,2578	0,2756
chr20	51007100	51009876	REMC_MyoepithelialBreast.94120	0	.	51007100	51009876	0	1	2776	0
chr20	51010139	51012461	REMC_MyoepithelialBreast.94121	0	.	51010139	51012461	0	1	2322	0
chr20	51014850	51016305	REMC_MyoepithelialBreast.94123	0	.	51014850	51016305	0	1	1455	0
chr20	51016540	51021178	REMC_MyoepithelialBreast.94124	0	.	51016540	51021178	0	1	4638	0
chr20	51551713	51553811	H1_polyA+.118452	0	.	51551713	51553811	0	1	2098	0
chr20	51552291	51553427	HepG2_Caltech_ENCODE.39682	0	.	51552291	51553427	0	1	1136	0
chr20	51559811	51560947	REMC_MyoepithelialBreast.93961	0	.	51559811	51560947	0	1	1136	0
chr20	51559820	51561567	BT474_Burge_Thompson.36485	0	.	51559820	51561567	0	1	1747	0
chr20	51559823	51561321	MCF7_Burge_Thompson.32969	0	.	51559823	51561321	0	1	1498	0
chr20	51559888	51561033	MIP101.71214	0	.	51559888	51561033	0	1	1145	0
chr20	51560532	51561314	REMC_LuminalBreast.100554	0	.	51560532	51561314	0	1	782	0
chr20	51572183	51572646	BT474_Burge_Thompson.36490	0	.	51572183	51572646	0	1	463	0
chr20	51575890	51577917	REMC_LuminalBreast.100560	0	.	51575890	51577917	0	1	2027	0
chr20	51576670	51578449	REMC_MyoepithelialBreast.93968	0	.	51576670	51578449	0	1	1779	0
chr20	51576684	51577783	prostate_carcinoma.101960	0	.	51576684	51577783	0	1	1099	0
chr20	51577075	51577831	B_cells_Cheung.199788	0	.	51577075	51577831	0	1	756	0
chr20	51578063	51580281	REMC_LuminalBreast.100561	0	.	51578063	51580281	0	1	2218	0
chr20	51578711	51579658	REMC_MyoepithelialBreast.93969	0	.	51578711	51579658	0	1	947	0
chr20	51580317	51581045	BT474_Burge_Thompson.36494	0	.	51580317	51581045	0	1	728	0
chr20	51580465	51581162	REMC_LuminalBreast.100562	0	.	51580465	51581162	0	1	697	0
chr20	51581297	51583788	REMC_LuminalBreast.100563	0	.	51581297	51583788	0	1	2491	0
chr20	51583561	51583927	CD4_Plagnol_resting.65110	0	.	51583561	51583927	0	1	366	0
chr20	51583868	51587498	REMC_LuminalBreast.100564	0	.	51583868	51587498	0	1	3630	0
chr20	51584009	51584786	REMC_MyoepithelialBreast.93971	0	.	51584009	51584786	0	1	777	0
chr20	51584010	51585226	B_Cells_Pritchard.3272773	0	+	51584010	51585226	0	1	1216	0
chr20	51587610	51590629	REMC_LuminalBreast.100565	0	.	51587610	51590629	0	1	3019	0
chr20	51588998	51589973	REMC_MyoepithelialBreast.93972	0	.	51588998	51589973	0	1	975	0
chr20	51589329	51589961	BT474_Burge_Thompson.36497	0	.	51589329	51589961	0	1	632	0
chr20	51595177	51598219	REMC_LuminalBreast.100569	0	.	51595177	51598219	0	1	3042	0
chr20	51608011	51608432	B_cells_Cheung.199817	0	.	51608011	51608432	0	1	421	0
chr20	51608776	51611991	REMC_LuminalBreast.100575	0	.	51608776	51611991	0	1	3215	0
chr20	51613347	51614150	B_cells_Cheung.200015	0	.	51613347	51614150	0	2	488,315	0,488
chr20	51613610	51614149	CD4_Plagnol_activated.67109	0	.	51613610	51614149	0	1	539	0
chr20	51684910	51685320	MCF7_Burge_Thompson.33002	0	.	51684910	51685320	0	1	410	0
chr20	51686102	51686445	BT474_Burge_Thompson.36513	0	.	51686102	51686445	0	1	343	0
chr20	51692933	51694019	REMC_LuminalBreast.100587	0	.	51692933	51694019	0	1	1086	0
chr20	51693072	51693804	B_Cells_Pritchard.3273037	0	.	51693072	51693804	0	1	732	0
chr20	51706038	51706820	B_Cells_Pritchard.3273077	0	.	51706038	51706820	0	1	782	0
chr20	51710050	51710615	MCF7_Burge_Thompson.33007	0	.	51710050	51710615	0	1	565	0
chr20	51710067	51710378	A549_Myers.90382	0	.	51710067	51710378	0	1	311	0
chr20	51715774	51716549	MCF7_Burge_Thompson.33008	0	.	51715774	51716549	0	1	775	0
chr20	51719069	51719795	MCF7_Burge_Thompson.33009	0	.	51719069	51719795	0	1	726	0
chr20	51757230	51757961	BT474_Burge_Thompson.36519	0	.	51757230	51757961	0	1	731	0
chr20	51757241	51757645	MCF7_Burge_Thompson.33017	0	.	51757241	51757645	0	1	404	0
chr20	51758248	51758572	MCF7_Burge_Thompson.33018	0	.	51758248	51758572	0	1	324	0
chr20	51763586	51763995	BT474_Burge_Thompson.36521	0	.	51763586	51763995	0	1	409	0
chr20	51808531	51809138	BT474_Burge_Thompson.36529	0	.	51808531	51809138	0	1	607	0
chr20	51808554	51809250	MCF7_Burge_Thompson.33031	0	.	51808554	51809250	0	1	696	0
chr20	51820889	51821949	REMC_BreastStem.50694	0	.	51820889	51821949	0	1	1060	0
chr20	51822838	51825333	REMC_LuminalBreast.100591	0	.	51822838	51825333	0	1	2495	0
chr20	51824876	51826631	REMC_MyoepithelialBreast.93988	0	.	51824876	51826631	0	1	1755	0
chr20	51873051	51873533	MCF7_Burge_Thompson.33049	0	.	51873051	51873533	0	1	482	0
chr20	51873065	51873795	BT474_Burge_Thompson.36562	0	.	51873065	51873795	0	1	730	0
chr20	51875634	51876810	BT474_Burge_Thompson.36564	0	.	51875634	51876810	0	1	1176	0
chr20	51914654	51915572	BT474_Burge_Thompson.36567	0	.	51914654	51915572	0	1	918	0
chr20	51916595	51918322	REMC_LuminalBreast.100596	0	.	51916595	51918322	0	1	1727	0
chr20	51923197	51923606	B_Cells_Pritchard.3273853	0	.	51923197	51923606	0	1	409	0
chr20	51926237	51927229	BT474_Burge_Thompson.36568	0	.	51926237	51927229	0	1	992	0
chr20	51950684	51952180	B_Cells_Pritchard.3273957	0	.	51950684	51952180	0	1	1496	0
chr20	51955057	51962743	B_Cells_Pritchard.3273969	0	-	51955057	51962743	0	7	1447,112,83,55,325,1052,2728	0,1469,2248,2423,3184,3784,4958
chr20	51961310	51961711	BT474_Burge_Thompson.36573	0	.	51961310	51961711	0	1	401	0
chr20	51963269	51972102	B_Cells_Pritchard.3273973	0	+	51963269	51972102	0	5	646,2506,2009,503,1408	0,811,3422,5492,7425
chr20	51970678	51977365	B_cells_Cheung.200396	0	.	51970678	51977365	0	1	6687	0
chr20	51971480	51972107	BT474_Burge_Thompson.36580	0	.	51971480	51972107	0	1	627	0
chr20	51982934	51986518	B_Cells_Pritchard.3273991	0	.	51982934	51986518	0	1	3584	0
chr20	52128251	52129427	B_cells_Cheung.199925	0	.	52128251	52129427	0	1	1176	0
chr20	52129597	52129978	B_cells_Cheung.199926	0	.	52129597	52129978	0	1	381	0
chr20	52130264	52130878	B_Cells_Pritchard.3274325	0	.	52130264	52130878	0	1	614	0
chr20	52163857	52164516	BT474_Burge_Thompson.36586	0	.	52163857	52164516	0	1	659	0
chr20	52165133	52165551	A549_Myers.90411	0	.	52165133	52165551	0	1	418	0
chr20	52171143	52171748	MCF7_Burge_Thompson.33095	0	.	52171143	52171748	0	1	605	0
chr20	52180422	52183284	pHIT000121361	0	+	52180422	52183284	0	3	93,201,177	0,216,2685
chr20	53144249	53145125	BT474_Burge_Thompson.36664	0	.	53144249	53145125	0	1	876	0
chr20	53155534	53156734	BT474_Burge_Thompson.36668	0	.	53155534	53156734	0	1	1200	0
chr20	53470776	53471310	MCF7_Burge_Thompson.33158	0	.	53470776	53471310	0	1	534	0
chr20	53489845	53490749	BT474_Burge_Thompson.36688	0	.	53489845	53490749	0	1	904	0
chr20	53494168	53494914	BT474_Burge_Thompson.36690	0	.	53494168	53494914	0	1	746	0
chr20	53510544	53511541	BT474_Burge_Thompson.36691	0	.	53510544	53511541	0	1	997	0
chr20	53673393	53674455	BT474_Burge_Thompson.36705	0	.	53673393	53674455	0	1	1062	0
chr20	54164012	54164495	BT474_Burge_Thompson.36715	0	.	54164012	54164495	0	1	483	0
chr20	54164182	54164622	B_Cells_Pritchard.3278637	0	.	54164182	54164622	0	1	440	0
chr20	54172004	54172693	BT474_Burge_Thompson.36716	0	.	54172004	54172693	0	1	689	0
chr20	54324516	54324989	B_Cells_Pritchard.3279021	0	.	54324516	54324989	0	1	473	0
chr20	54352401	54352854	pHIT000035874	0	-	54352401	54352854	0	1	453	0
chr20	54352445	54352802	A549_Myers.90424	0	.	54352445	54352802	0	1	357	0
chr20	54651428	54652949	REMC_LuminalBreast.100923	0	.	54651428	54652949	0	1	1521	0
chr20	54653276	54653708	BT474_Burge_Thompson.36785	0	.	54653276	54653708	0	1	432	0
chr20	54653277	54657291	REMC_LuminalBreast.100924	0	.	54653277	54657291	0	1	4014	0
chr20	54653362	54654294	REMC_MyoepithelialBreast.94070	0	.	54653362	54654294	0	1	932	0
chr20	54654684	54655740	melanoma_Garraway_short_term_cultures.71225	0	.	54654684	54655740	0	1	1056	0
chr20	54655158	54655515	MB435_Burge.45007	0	.	54655158	54655515	0	1	357	0
chr20	54657716	54661101	REMC_LuminalBreast.100925	0	.	54657716	54661101	0	1	3385	0
chr20	54657904	54659040	REMC_MyoepithelialBreast.94073	0	.	54657904	54659040	0	1	1136	0
chr20	54658294	54658807	melanoma_Garraway_short_term_cultures.71227	0	.	54658294	54658807	0	1	513	0
chr20	54661165	54664050	REMC_LuminalBreast.100926	0	.	54661165	54664050	0	1	2885	0
chr20	54662234	54664043	REMC_MyoepithelialBreast.94076	0	.	54662234	54664043	0	1	1809	0
chr20	54662601	54663700	melanoma_Garraway_short_term_cultures.71230	0	.	54662601	54663700	0	1	1099	0
chr20	54664198	54667995	REMC_LuminalBreast.100927	0	.	54664198	54667995	0	1	3797	0
chr20	54665761	54667034	MDAMB468_Thompson.25306	0	.	54665761	54667034	0	1	1273	0
chr20	54666123	54667030	BT474_Burge_Thompson.36769	0	.	54666123	54667030	0	1	907	0
chr20	54666212	54667107	BT20_Thompson.22804	0	.	54666212	54667107	0	1	895	0
chr20	54666398	54667117	REMC_MyoepithelialBreast.94078	0	.	54666398	54667117	0	1	719	0
chr20	54669866	54670665	REMC_LuminalBreast.100929	0	.	54669866	54670665	0	1	799	0
chr20	54670468	54671148	REMC_MyoepithelialBreast.94080	0	.	54670468	54671148	0	1	680	0
chr20	54670665	54671250	REMC_LuminalBreast.100930	0	.	54670665	54671250	0	1	585	0
chr20	54672702	54674483	REMC_LuminalBreast.100933	0	.	54672702	54674483	0	1	1781	0
chr20	54676105	54677207	REMC_LuminalBreast.100935	0	.	54676105	54677207	0	1	1102	0
chr20	54678840	54680150	REMC_LuminalBreast.100936	0	.	54678840	54680150	0	1	1310	0
chr20	54679190	54679762	REMC_MyoepithelialBreast.94081	0	.	54679190	54679762	0	1	572	0
chr20	54679233	54680100	melanoma_Garraway_short_term_cultures.71231	0	.	54679233	54680100	0	1	867	0
chr20	54682673	54683914	REMC_MyoepithelialBreast.94082	0	.	54682673	54683914	0	1	1241	0
chr20	54683173	54685798	REMC_LuminalBreast.100938	0	.	54683173	54685798	0	1	2625	0
chr20	54684089	54686222	REMC_MyoepithelialBreast.94083	0	.	54684089	54686222	0	1	2133	0
chr20	54684980	54685552	BT474_Burge_Thompson.36773	0	.	54684980	54685552	0	1	572	0
chr20	54697905	54701261	REMC_LuminalBreast.100945	0	.	54697905	54701261	0	1	3356	0
chr20	54698648	54700257	REMC_MyoepithelialBreast.94086	0	.	54698648	54700257	0	1	1609	0
chr20	54698900	54699649	BT474_Burge_Thompson.36788	0	.	54698900	54699649	0	1	749	0
chr20	54702351	54704178	REMC_LuminalBreast.100946	0	.	54702351	54704178	0	1	1827	0
chr20	54702596	54703520	BT474_Burge_Thompson.36791	0	.	54702596	54703520	0	1	924	0
chr20	54702799	54703479	REMC_MyoepithelialBreast.94087	0	.	54702799	54703479	0	1	680	0
chr20	54702809	54703195	B_Cells_Pritchard.3279957	0	.	54702809	54703195	0	1	386	0
chr20	54705768	54707156	REMC_LuminalBreast.100948	0	.	54705768	54707156	0	1	1388	0
chr20	54710277	54711642	REMC_LuminalBreast.100950	0	.	54710277	54711642	0	1	1365	0
chr20	54714297	54716795	REMC_LuminalBreast.100952	0	.	54714297	54716795	0	1	2498	0
chr20	54721696	54723606	REMC_LuminalBreast.100954	0	.	54721696	54723606	0	1	1910	0
chr20	54723761	54724698	REMC_LuminalBreast.100955	0	.	54723761	54724698	0	1	937	0
chr20	54725042	54726275	REMC_LuminalBreast.100956	0	.	54725042	54726275	0	1	1233	0
chr20	54725161	54726010	BT474_Burge_Thompson.36793	0	.	54725161	54726010	0	1	849	0
chr20	54738177	54741019	REMC_LuminalBreast.100958	0	+	54738177	54741019	0	2	463,1524	0,1318
chr20	54738331	54740738	REMC_MyoepithelialBreast.94088	0	+	54738331	54740738	0	2	309,1243	0,1164
chr20	54747345	54748968	H1_polyA+.118548	0	.	54747345	54748968	0	1	1623	0
chr20	54749804	54751013	REMC_LuminalBreast.100960	0	.	54749804	54751013	0	1	1209	0
chr20	54769817	54770377	BT474_Burge_Thompson.36797	0	.	54769817	54770377	0	1	560	0
chr20	54799289	54799789	BT474_Burge_Thompson.36803	0	.	54799289	54799789	0	1	500	0
chr20	54801758	54803118	BT474_Burge_Thompson.36804	0	.	54801758	54803118	0	1	1360	0
chr20	54802093	54802699	B_Cells_Pritchard.3280235	0	.	54802093	54802699	0	1	606	0
chr20	54813135	54814016	A549_Myers.90450	0	.	54813135	54814016	0	1	881	0
chr20	54813186	54814189	BT474_Burge_Thompson.36806	0	.	54813186	54814189	0	1	1003	0
chr20	54834084	54835763	REMC_MyoepithelialBreast.94089	0	.	54834084	54835763	0	1	1679	0
chr20	54850817	54851154	A549_Myers.90453	0	.	54850817	54851154	0	1	337	0
chr20	54881130	54881812	BT474_Burge_Thompson.36810	0	.	54881130	54881812	0	1	682	0
chr20	54920360	54921742	BT474_Burge_Thompson.36812	0	.	54920360	54921742	0	1	1382	0
chr20	54947197	54947904	BT474_Burge_Thompson.36814	0	.	54947197	54947904	0	1	707	0
chr20	54954486	54954853	BT474_Burge_Thompson.36816	0	.	54954486	54954853	0	1	367	0
chr20	54984240	54984959	BT474_Burge_Thompson.36817	0	.	54984240	54984959	0	1	719	0
chr20	54986844	54988093	MCF7_Burge_Thompson.33176	0	.	54986844	54988093	0	1	1249	0
chr20	54998298	54999268	melanoma_Garraway_short_term_cultures.71234	0	.	54998298	54999268	0	1	970	0
chr20	55008931	55009927	melanoma_Garraway_short_term_cultures.71235	0	.	55008931	55009927	0	1	996	0
chr20	55010857	55011449	melanoma_Garraway_short_term_cultures.71236	0	.	55010857	55011449	0	1	592	0
chr20	55012014	55012456	BT474_Burge_Thompson.36818	0	.	55012014	55012456	0	1	442	0
chr20	55029497	55029877	A549_Myers.90460	0	.	55029497	55029877	0	1	380	0
chr20	55040347	55040811	BT474_Burge_Thompson.36819	0	.	55040347	55040811	0	1	464	0
chr20	55055371	55055747	BT474_Burge_Thompson.36820	0	.	55055371	55055747	0	1	376	0
chr20	55090544	55090979	A549_Myers.90462	0	.	55090544	55090979	0	1	435	0
chr20	55101361	55101823	A549_Myers.90466	0	.	55101361	55101823	0	1	462	0
chr20	55113059	55113449	A549_Myers.90467	0	.	55113059	55113449	0	1	390	0
chr20	55116473	55118697	K562.46726	0	.	55116473	55118697	0	1	2224	0
chr20	55123981	55124645	H1_polyA+.118551	0	.	55123981	55124645	0	1	664	0
chr20	55124038	55124664	prostate_carcinoma.102071	0	.	55124038	55124664	0	1	626	0
chr20	55124703	55125991	H1_polyA+.118552	0	.	55124703	55125991	0	1	1288	0
chr20	55124998	55126084	prostate_carcinoma.102072	0	.	55124998	55126084	0	1	1086	0
chr20	55151102	55151406	A549_Myers.90468	0	.	55151102	55151406	0	1	304	0
chr20	55167263	55170837	Rinn_00028451	0	-	55167263	55170837	0	2	1007,426	0,3148
chr20	55170284	55172238	HIT000012145	0	-	55170284	55172238	0	1	1954	0
chr20	55173209	55173555	A549_Myers.90469	0	.	55173209	55173555	0	1	346	0
chr20	55275254	55291474	HIT000095010	0	+	55275254	55291474	0	2	415,769	0,15451
chr20	55275258	55291458	Rinn_00027871	0	+	55275258	55291458	0	2	411,754	0,15446
chr20	55275259	55291461	ENST00000412321	0	+	55275259	55291461	0	2	410,756	0,15446
chr20	55275259	55291474	HIT000098737	0	+	55275259	55291474	0	2	410,769	0,15446
chr20	55285842	55286616	MCF7_Burge_Thompson.33187	0	.	55285842	55286616	0	1	774	0
chr20	55287589	55288185	MCF7_Burge_Thompson.33188	0	.	55287589	55288185	0	1	596	0
chr20	55290966	55291430	prostate_carcinoma.102095	0	.	55290966	55291430	0	1	464	0
chr20	55298325	55299431	MIP101.71270	0	.	55298325	55299431	0	1	1106	0
chr20	55388511	55389174	CD4_Plagnol_activated.67380	0	.	55388511	55389174	0	1	663	0
chr20	55388645	55389155	prostate_carcinoma.102307	0	.	55388645	55389155	0	1	510	0
chr20	55389201	55393639	REMC_LuminalBreast.100967	0	.	55389201	55393639	0	1	4438	0
chr20	55391804	55393385	CD4_Plagnol_activated.67382	0	.	55391804	55393385	0	1	1581	0
chr20	55392178	55393468	BT474_Burge_Thompson.36831	0	.	55392178	55393468	0	1	1290	0
chr20	55392347	55393359	H1_polyA+.118562	0	.	55392347	55393359	0	1	1012	0
chr20	55392562	55393363	K562.46740	0	.	55392562	55393363	0	1	801	0
chr20	55392791	55393361	prostate_normal.61084	0	.	55392791	55393361	0	1	570	0
chr20	55392840	55393380	prostate_carcinoma.102309	0	.	55392840	55393380	0	1	540	0
chr20	55394673	55395560	H1_polyA+.118563	0	.	55394673	55395560	0	1	887	0
chr20	55395798	55396507	REMC_MyoepithelialBreast.94099	0	.	55395798	55396507	0	1	709	0
chr20	55398376	55398823	A549_Myers.90489	0	.	55398376	55398823	0	1	447	0
chr20	55578536	55579822	kidney_Gilad.86872	0	.	55578536	55579822	0	1	1286	0
chr20	55589837	55603293	khalil_1277	0	.	55589837	55603293	0	7	40,391,103,189,417,200,220	0,1591,7214,11273,11885,12662,13236
chr20	55594678	55595047	A549_Myers.90514	0	.	55594678	55595047	0	1	369	0
chr20	55610074	55611275	BT474_Burge_Thompson.36856	0	.	55610074	55611275	0	1	1201	0
chr20	55610834	55611268	B_Cells_Pritchard.3282499	0	-	55610834	55611268	0	1	434	0
chr20	55637414	55642359	REMC_MyoepithelialBreast.94103	0	.	55637414	55642359	0	1	4945	0
chr20	55637478	55641649	REMC_LuminalBreast.100975	0	.	55637478	55641649	0	1	4171	0
chr20	55653466	55654348	REMC_BreastStem.50787	0	.	55653466	55654348	0	1	882	0
chr20	55654001	55655508	REMC_LuminalBreast.100981	0	.	55654001	55655508	0	1	1507	0
chr20	55721861	55732781	H1_polyA+.118600	0	+	55721861	55732781	0	2	161,3912	0,7008
chr20	55722391	55724683	MCF10A_Thompson.22092	0	.	55722391	55724683	0	1	2292	0
chr20	55722453	55732779	prostate_normal.61144	0	-	55722453	55732779	0	3	2351,1869,2313	0,5545,8013
chr20	55723423	55725786	REMC_LuminalBreast.101004	0	.	55723423	55725786	0	1	2363	0
chr20	55724023	55724974	REMC_MyoepithelialBreast.94114	0	.	55724023	55724974	0	1	951	0
chr20	55724066	55724819	BT474_Burge_Thompson.36999	0	.	55724066	55724819	0	1	753	0
chr20	55724113	55724810	ZR751_Thompson.24861	0	.	55724113	55724810	0	1	697	0
chr20	55727112	55732781	H1_polyA+.118601	0	.	55727112	55732781	0	1	5669	0
chr20	55727112	55732781	H1_polyA+.118602	0	-	55727112	55732781	0	2	1816,1029	0,4640
chr20	55727156	55728621	melanoma_Garraway_short_term_cultures.71260	0	.	55727156	55728621	0	1	1465	0
chr20	55727275	55728170	BT20_Thompson.22817	0	.	55727275	55728170	0	1	895	0
chr20	55727317	55728157	CD4_Plagnol_resting.65231	0	.	55727317	55728157	0	1	840	0
chr20	55728743	55730212	melanoma_Garraway_short_term_cultures.71261	0	.	55728743	55730212	0	1	1469	0
chr20	55730468	55732785	melanoma_Garraway_short_term_cultures.71263	0	.	55730468	55732785	0	1	2317	0
chr20	55731462	55732787	MIP101.71282	0	.	55731462	55732787	0	1	1325	0
chr20	55733014	55735431	MCF7_Burge_Thompson.33238	0	.	55733014	55735431	0	1	2417	0
chr20	55733026	55737676	H1_polyA+.118604	0	+	55733026	55737676	0	2	167,4151	0,499
chr20	55733026	55737676	H1_polyA+.118603	0	.	55733026	55737676	0	1	4650	0
chr20	55734234	55735314	ZR751_Thompson.24864	0	.	55734234	55735314	0	1	1080	0
chr20	55735457	55737686	melanoma_Garraway_short_term_cultures.71266	0	.	55735457	55737686	0	1	2229	0
chr20	55735547	55737679	BT474_Burge_Thompson.36882	0	.	55735547	55737679	0	1	2132	0
chr20	55735553	55737664	MCF7_Burge_Thompson.33197	0	.	55735553	55737664	0	1	2111	0
chr20	55735567	55736925	MIP101.71280	0	.	55735567	55736925	0	1	1358	0
chr20	55735601	55736421	MCF10A_Thompson.22095	0	.	55735601	55736421	0	1	820	0
chr20	55736143	55737556	BT20_Thompson.22819	0	.	55736143	55737556	0	1	1413	0
chr20	55736797	55737424	ZR751_Thompson.24866	0	.	55736797	55737424	0	1	627	0
chr20	55740348	55741308	prostate_normal.61157	0	.	55740348	55741308	0	1	960	0
chr20	55749821	55751409	prostate_carcinoma.103091	0	.	55749821	55751409	0	1	1588	0
chr20	55750537	55750859	A549_Myers.90559	0	.	55750537	55750859	0	1	322	0
chr20	55754502	55755941	prostate_normal.61159	0	.	55754502	55755941	0	1	1439	0
chr20	55756139	55757140	prostate_normal.61160	0	.	55756139	55757140	0	1	1001	0
chr20	55757123	55757429	A549_Myers.90561	0	.	55757123	55757429	0	1	306	0
chr20	55761774	55762912	BT474_Burge_Thompson.36883	0	.	55761774	55762912	0	1	1138	0
chr20	55790855	55794039	prostate_carcinoma.102178	0	.	55790855	55794039	0	1	3184	0
chr20	55794606	55796423	prostate_carcinoma.102182	0	.	55794606	55796423	0	1	1817	0
chr20	55794611	55802084	prostate_carcinoma.102183	0	+	55794611	55802084	0	2	1798,164	0,7309
chr20	55796576	55801839	prostate_carcinoma.102184	0	.	55796576	55801839	0	1	5263	0
chr20	55804256	55804982	prostate_carcinoma.102186	0	.	55804256	55804982	0	1	726	0
chr20	55806431	55809312	prostate_carcinoma.102188	0	.	55806431	55809312	0	1	2881	0
chr20	55812979	55813950	prostate_carcinoma.102193	0	.	55812979	55813950	0	1	971	0
chr20	55814064	55816670	prostate_carcinoma.102194	0	.	55814064	55816670	0	1	2606	0
chr20	55817040	55817990	prostate_carcinoma.102195	0	.	55817040	55817990	0	1	950	0
chr20	55818157	55820399	prostate_carcinoma.102189	0	.	55818157	55820399	0	1	2242	0
chr20	55818279	55818596	A549_Myers.90567	0	.	55818279	55818596	0	1	317	0
chr20	55819050	55819584	A549_Myers.90568	0	.	55819050	55819584	0	1	534	0
chr20	55820608	55841022	prostate_carcinoma.102196	0	+	55820608	55841022	0	3	69,2976,1799	0,12240,18615
chr20	55825511	55830804	prostate_carcinoma.102179	0	-	55825511	55830804	0	2	456,2297	0,2996
chr20	55826539	55830804	prostate_carcinoma.102180	0	.	55826539	55830804	0	1	4265	0
chr20	55829199	55830059	BT474_Burge_Thompson.36887	0	.	55829199	55830059	0	1	860	0
chr20	55834657	55835502	BT474_Burge_Thompson.36888	0	.	55834657	55835502	0	1	845	0
chr20	55836072	55842090	prostate_carcinoma.102197	0	+	55836072	55842090	0	2	2325,654	0,5364
chr20	55842520	55843070	BT474_Burge_Thompson.36890	0	.	55842520	55843070	0	1	550	0
chr20	55842861	55846786	prostate_carcinoma.102181	0	.	55842861	55846786	0	1	3925	0
chr20	55846946	55850595	prostate_carcinoma.102200	0	.	55846946	55850595	0	1	3649	0
chr20	55846946	55855532	prostate_carcinoma.102202	0	+	55846946	55855532	0	2	2927,3254	0,5332
chr20	55850906	55855532	prostate_carcinoma.102201	0	.	55850906	55855532	0	1	4626	0
chr20	55852546	55853538	BT474_Burge_Thompson.36891	0	.	55852546	55853538	0	1	992	0
chr20	55854225	55854990	BT474_Burge_Thompson.36892	0	.	55854225	55854990	0	1	765	0
chr20	55856279	55856602	prostate_carcinoma.102203	0	.	55856279	55856602	0	1	323	0
chr20	55859065	55860154	prostate_carcinoma.102205	0	.	55859065	55860154	0	1	1089	0
chr20	55859092	55860010	BT474_Burge_Thompson.36895	0	.	55859092	55860010	0	1	918	0
chr20	55861665	55864819	prostate_carcinoma.102207	0	.	55861665	55864819	0	1	3154	0
chr20	55865714	55866998	prostate_carcinoma.102208	0	.	55865714	55866998	0	1	1284	0
chr20	55868072	55869674	prostate_carcinoma.102209	0	.	55868072	55869674	0	1	1602	0
chr20	55873857	55880564	prostate_carcinoma.102210	0	.	55873857	55880564	0	1	6707	0
chr20	55881052	55883388	prostate_carcinoma.102211	0	.	55881052	55883388	0	1	2336	0
chr20	55883542	55888153	prostate_carcinoma.102213	0	.	55883542	55888153	0	1	4611	0
chr20	55887272	55887748	A549_Myers.90570	0	.	55887272	55887748	0	1	476	0
chr20	55887436	55887796	BT474_Burge_Thompson.36897	0	.	55887436	55887796	0	1	360	0
chr20	55898144	55901790	prostate_carcinoma.102215	0	.	55898144	55901790	0	1	3646	0
chr20	55898453	55899806	BT474_Burge_Thompson.36898	0	.	55898453	55899806	0	1	1353	0
chr20	55900870	55901534	BT474_Burge_Thompson.36899	0	.	55900870	55901534	0	1	664	0
chr20	55902670	55903815	BT474_Burge_Thompson.36900	0	.	55902670	55903815	0	1	1145	0
chr20	55909714	55913441	prostate_carcinoma.102216	0	.	55909714	55913441	0	1	3727	0
chr20	55921587	55922088	A549_Myers.90574	0	.	55921587	55922088	0	1	501	0
chr20	55950328	55951273	prostate_carcinoma.102222	0	.	55950328	55951273	0	1	945	0
chr20	55954566	55955317	BT474_Burge_Thompson.36901	0	.	55954566	55955317	0	1	751	0
chr20	55957826	55958444	BT474_Burge_Thompson.36903	0	.	55957826	55958444	0	1	618	0
chr20	55959817	55960880	BT474_Burge_Thompson.36904	0	.	55959817	55960880	0	1	1063	0
chr20	55990967	55991482	BT474_Burge_Thompson.36907	0	.	55990967	55991482	0	1	515	0
chr20	56017364	56030067	prostate_carcinoma.102227	0	-	56017364	56030067	0	2	1695,3177	0,9526
chr20	56020106	56020455	A549_Myers.90579	0	.	56020106	56020455	0	1	349	0
chr20	56021145	56021579	BT474_Burge_Thompson.36911	0	.	56021145	56021579	0	1	434	0
chr20	56024639	56030402	prostate_carcinoma.102228	0	.	56024639	56030402	0	1	5763	0
chr20	56025671	56030123	prostate_normal.61094	0	.	56025671	56030123	0	1	4452	0
chr20	56025850	56026519	A549_Myers.90580	0	.	56025850	56026519	0	1	669	0
chr20	56025933	56028152	MCF10A_Thompson.22096	0	.	56025933	56028152	0	1	2219	0
chr20	56026214	56030179	melanoma_Garraway_short_term_cultures.71269	0	.	56026214	56030179	0	1	3965	0
chr20	56026301	56028929	REMC_LuminalBreast.101006	0	.	56026301	56028929	0	1	2628	0
chr20	56026304	56027337	MDAMB231_Thompson.22840	0	.	56026304	56027337	0	1	1033	0
chr20	56026551	56027482	MCF7_Burge_Thompson.33200	0	.	56026551	56027482	0	1	931	0
chr20	56026629	56027295	A549_Myers.90581	0	.	56026629	56027295	0	1	666	0
chr20	56028120	56028625	A549_Myers.90583	0	.	56028120	56028625	0	1	505	0
chr20	56028503	56029508	MCF10A_Thompson.22097	0	.	56028503	56029508	0	1	1005	0
chr20	56028980	56029961	REMC_LuminalBreast.101007	0	.	56028980	56029961	0	1	981	0
chr20	56030491	56034388	prostate_carcinoma.102231	0	.	56030491	56034388	0	1	3897	0
chr20	56030715	56039752	prostate_carcinoma.102232	0	+	56030715	56039752	0	2	2561,60	0,8977
chr20	56031062	56031393	prostate_normal.61095	0	.	56031062	56031393	0	1	331	0
chr20	56032234	56033644	prostate_normal.61096	0	.	56032234	56033644	0	1	1410	0
chr20	56034627	56038775	prostate_carcinoma.102233	0	.	56034627	56038775	0	1	4148	0
chr20	56034705	56035821	melanoma_Garraway_short_term_cultures.71271	0	.	56034705	56035821	0	1	1116	0
chr20	56035293	56035777	prostate_normal.61098	0	.	56035293	56035777	0	1	484	0
chr20	56039951	56042316	prostate_carcinoma.102234	0	.	56039951	56042316	0	1	2365	0
chr20	56045880	56046734	prostate_carcinoma.102235	0	.	56045880	56046734	0	1	854	0
chr20	56045963	56047501	BT474_Burge_Thompson.36914	0	.	56045963	56047501	0	1	1538	0
chr20	56046951	56047463	prostate_carcinoma.102237	0	.	56046951	56047463	0	1	512	0
chr20	56048134	56049002	BT474_Burge_Thompson.36915	0	.	56048134	56049002	0	1	868	0
chr20	56048245	56048982	prostate_carcinoma.102238	0	.	56048245	56048982	0	1	737	0
chr20	56048355	56048783	A549_Myers.90585	0	.	56048355	56048783	0	1	428	0
chr20	56050911	56051904	prostate_carcinoma.102241	0	.	56050911	56051904	0	1	993	0
chr20	56051272	56051985	BT474_Burge_Thompson.36916	0	.	56051272	56051985	0	1	713	0
chr20	56052209	56055756	prostate_carcinoma.102239	0	.	56052209	56055756	0	1	3547	0
chr20	56053421	56054401	BT474_Burge_Thompson.36918	0	.	56053421	56054401	0	1	980	0
chr20	56060830	56065241	prostate_carcinoma.102243	0	.	56060830	56065241	0	1	4411	0
chr20	56072778	56075199	prostate_carcinoma.102248	0	.	56072778	56075199	0	1	2421	0
chr20	56077514	56080522	Rinn_00028075	0	-	56077514	56080522	0	2	675,339	0,2669
chr20	56077514	56080532	Rinn_00028076	0	-	56077514	56080532	0	2	675,71	0,2947
chr20	56077515	56080522	ENST00000441277	0	-	56077515	56080522	0	2	674,338	0,2669
chr20	56077515	56080532	ENST00000452842	0	-	56077515	56080532	0	2	674,70	0,2947
chr20	56077612	56078595	BT474_Burge_Thompson.36922	0	.	56077612	56078595	0	1	983	0
chr20	56079544	56080242	BT474_Burge_Thompson.36923	0	.	56079544	56080242	0	1	698	0
chr20	56081107	56081988	BT474_Burge_Thompson.36924	0	.	56081107	56081988	0	1	881	0
chr20	56081796	56082178	A549_Myers.90587	0	.	56081796	56082178	0	1	382	0
chr20	56082878	56084304	BT474_Burge_Thompson.36925	0	.	56082878	56084304	0	1	1426	0
chr20	56098554	56099320	BT474_Burge_Thompson.36928	0	.	56098554	56099320	0	1	766	0
chr20	56105259	56105829	BT474_Burge_Thompson.36929	0	.	56105259	56105829	0	1	570	0
chr20	56105295	56105760	B_Cells_Pritchard.3283825	0	.	56105295	56105760	0	1	465	0
chr20	56136056	56136804	BT474_Burge_Thompson.36940	0	.	56136056	56136804	0	1	748	0
chr20	56138192	56138659	BT474_Burge_Thompson.36942	0	.	56138192	56138659	0	1	467	0
chr20	56182050	56184930	prostate_carcinoma.102257	0	.	56182050	56184930	0	1	2880	0
chr20	56182073	56182661	prostate_normal.61105	0	.	56182073	56182661	0	1	588	0
chr20	56183292	56184104	BT474_Burge_Thompson.36950	0	.	56183292	56184104	0	1	812	0
chr20	56185281	56186611	prostate_carcinoma.102258	0	.	56185281	56186611	0	1	1330	0
chr20	56186161	56186546	A549_Myers.90591	0	.	56186161	56186546	0	1	385	0
chr20	56187390	56188107	prostate_carcinoma.102255	0	.	56187390	56188107	0	1	717	0
chr20	56188043	56188539	A549_Myers.90593	0	.	56188043	56188539	0	1	496	0
chr20	56204652	56205228	BT474_Burge_Thompson.37000	0	.	56204652	56205228	0	1	576	0
chr20	56206507	56207740	BT474_Burge_Thompson.37003	0	.	56206507	56207740	0	1	1233	0
chr20	56218356	56218759	A549_Myers.90594	0	.	56218356	56218759	0	1	403	0
chr20	56237301	56238220	testes_Burge.54768	0	.	56237301	56238220	0	1	919	0
chr20	56461028	56462231	H1_polyA+.118644	0	.	56461028	56462231	0	1	1203	0
chr20	56463790	56464435	B_Cells_Pritchard.3284771	0	.	56463790	56464435	0	1	645	0
chr20	56463988	56464441	B_cells_Cheung.200186	0	.	56463988	56464441	0	1	453	0
chr20	56465040	56465800	REMC_LuminalBreast.101224	0	.	56465040	56465800	0	1	760	0
chr20	56526443	56537666	HeLa_Bartel_miR-155_12hr.33347	0	-	56526443	56537666	0	3	475,3113,282	0,5730,10941
chr20	56526952	56601226	pHIT000121405	0	-	56526952	56601226	0	5	114,132,103,161,57	0,32396,67255,73809,74217
chr20	56527965	56535313	HeLa_Bartel_miR-1_12hr.31782	0	-	56527965	56535313	0	2	136,1744	0,5604
chr20	56528836	56529621	prostate_carcinoma.102297	0	.	56528836	56529621	0	1	785	0
chr20	56528891	56530528	B_cells_Cheung.200228	0	.	56528891	56530528	0	1	1637	0
chr20	56532149	56533271	HeLa_Bartel_WT_12hr.33152	0	.	56532149	56533271	0	1	1122	0
chr20	56532651	56533123	B_cells_Cheung.200230	0	.	56532651	56533123	0	1	472	0
chr20	56532956	56534336	REMC_LuminalBreast.101249	0	.	56532956	56534336	0	1	1380	0
chr20	56533194	56534419	B_cells_Cheung.200231	0	.	56533194	56534419	0	1	1225	0
chr20	56533333	56535545	HIT000015479	0	-	56533333	56535545	0	1	2212	0
chr20	56533727	56534645	HeLa_Bartel_WT_12hr.33153	0	.	56533727	56534645	0	1	918	0
chr20	56565503	56566271	B_cells_Cheung.200235	0	.	56565503	56566271	0	1	768	0
chr20	56575916	56576354	BT474_Burge_Thompson.37021	0	.	56575916	56576354	0	1	438	0
chr20	56580353	56585044	HeLa_Bartel_miR-155_12hr.33345	0	+	56580353	56585044	0	2	112,402	0,4289
chr20	56581962	56582674	B_Cells_Pritchard.3285179	0	.	56581962	56582674	0	1	712	0
chr20	56582034	56582517	HeLa_Bartel_WT_12hr.33144	0	.	56582034	56582517	0	1	483	0
chr20	56582070	56582979	prostate_carcinoma.102298	0	.	56582070	56582979	0	1	909	0
chr20	56585033	56585387	B_cells_Cheung.200241	0	.	56585033	56585387	0	1	354	0
chr20	56587771	56588322	B_cells_Cheung.200242	0	.	56587771	56588322	0	1	551	0
chr20	56589025	56589451	B_cells_Cheung.200243	0	.	56589025	56589451	0	1	426	0
chr20	56589818	56590922	B_cells_Cheung.200244	0	.	56589818	56590922	0	1	1104	0
chr20	56602364	56603100	BT474_Burge_Thompson.37024	0	.	56602364	56603100	0	1	736	0
chr20	56602959	56603360	B_cells_Cheung.200246	0	.	56602959	56603360	0	1	401	0
chr20	56605709	56606680	BT474_Burge_Thompson.37026	0	.	56605709	56606680	0	1	971	0
chr20	56611010	56612824	BT20_Thompson.22835	0	.	56611010	56612824	0	1	1814	0
chr20	56613711	56615889	BT474_Burge_Thompson.37029	0	.	56613711	56615889	0	1	2178	0
chr20	56614283	56614723	A549_Myers.90644	0	.	56614283	56614723	0	1	440	0
chr20	56615996	56618341	BT474_Burge_Thompson.37030	0	.	56615996	56618341	0	1	2345	0
chr20	56616363	56617437	prostate_carcinoma.102301	0	.	56616363	56617437	0	1	1074	0
chr20	56618677	56619021	A549_Myers.90645	0	.	56618677	56619021	0	1	344	0
chr20	56623064	56623370	A549_Myers.90646	0	.	56623064	56623370	0	1	306	0
chr20	56627289	56627834	B_cells_Cheung.200252	0	.	56627289	56627834	0	1	545	0
chr20	56627407	56628164	B_Cells_Pritchard.3285391	0	.	56627407	56628164	0	1	757	0
chr20	56631891	56632336	A549_Myers.90649	0	.	56631891	56632336	0	1	445	0
chr20	56632425	56632828	A549_Myers.90650	0	.	56632425	56632828	0	1	403	0
chr20	56632887	56633372	A549_Myers.90651	0	.	56632887	56633372	0	1	485	0
chr20	56633518	56636395	MDAMB231_Thompson.22856	0	.	56633518	56636395	0	1	2877	0
chr20	56635622	56636465	B_Cells_Pritchard.3285415	0	.	56635622	56636465	0	1	843	0
chr20	56636561	56639198	MDAMB231_Thompson.22857	0	.	56636561	56639198	0	1	2637	0
chr20	56636686	56639033	melanoma_Garraway_short_term_cultures.71302	0	.	56636686	56639033	0	1	2347	0
chr20	56639302	56644269	MDAMB231_Thompson.22858	0	.	56639302	56644269	0	1	4967	0
chr20	56639662	56643285	MCF10A_Thompson.22113	0	.	56639662	56643285	0	1	3623	0
chr20	56639812	56640998	B_Cells_Pritchard.3285431	0	.	56639812	56640998	0	1	1186	0
chr20	56640010	56640816	melanoma_Garraway_short_term_cultures.71301	0	.	56640010	56640816	0	1	806	0
chr20	56640086	56640821	prostate_carcinoma.102302	0	.	56640086	56640821	0	1	735	0
chr20	56641015	56642194	MCF7_Burge_Thompson.33208	0	.	56641015	56642194	0	1	1179	0
chr20	56641413	56642974	prostate_carcinoma.102303	0	.	56641413	56642974	0	1	1561	0
chr20	56641565	56642469	B_Cells_Pritchard.3285435	0	.	56641565	56642469	0	1	904	0
chr20	56641628	56642099	B_cells_Cheung.200255	0	.	56641628	56642099	0	1	471	0
chr20	56641965	56644205	melanoma_Garraway_short_term_cultures.71304	0	.	56641965	56644205	0	1	2240	0
chr20	56643021	56644198	B_cells_Cheung.200257	0	.	56643021	56644198	0	1	1177	0
chr20	56643047	56643841	MCF7_Burge_Thompson.33209	0	.	56643047	56643841	0	1	794	0
chr20	56643073	56644304	prostate_carcinoma.102304	0	.	56643073	56644304	0	1	1231	0
chr20	56653535	56655234	H1_polyA+.118663	0	.	56653535	56655234	0	1	1699	0
chr20	56653788	56654471	B_Cells_Pritchard.3285489	0	.	56653788	56654471	0	1	683	0
chr20	56735876	56737008	REMC_BreastStem.50803	0	.	56735876	56737008	0	1	1132	0
chr20	56737506	56738567	REMC_LuminalBreast.101022	0	.	56737506	56738567	0	1	1061	0
chr20	56822748	56823306	H9_polyA+.46862	0	.	56822748	56823306	0	1	558	0
chr20	56823560	56824536	B_Cells_Pritchard.3285889	0	.	56823560	56824536	0	1	976	0
chr20	56823835	56824765	B_cells_Cheung.200350	0	.	56823835	56824765	0	1	930	0
chr20	56826149	56826511	H1_rRNA-depleted_UCSD_REMC.89599	0	.	56826149	56826511	0	1	362	0
chr20	56827030	56829041	prostate_carcinoma.102313	0	.	56827030	56829041	0	1	2011	0
chr20	56829196	56832544	MCF7_Burge_Thompson.33389	0	.	56829196	56832544	0	1	3348	0
chr20	56829289	56830629	prostate_carcinoma.102314	0	.	56829289	56830629	0	1	1340	0
chr20	56829296	56830245	T47D_Burge_Thompson.30208	0	.	56829296	56830245	0	1	949	0
chr20	56829347	56835282	B_cells_Cheung.200355	0	.	56829347	56835282	0	1	5935	0
chr20	56829369	56835277	B_Cells_Pritchard.3285895	0	.	56829369	56835277	0	1	5908	0
chr20	56829385	56829806	BT474_Burge_Thompson.37056	0	.	56829385	56829806	0	1	421	0
chr20	56829403	56829955	H1_rRNA-depleted_UCSD_REMC.89602	0	.	56829403	56829955	0	1	552	0
chr20	56829404	56829828	NEC_from_H9.77170	0	.	56829404	56829828	0	1	424	0
chr20	56829619	56830237	K562.46782	0	.	56829619	56830237	0	1	618	0
chr20	56830446	56832479	T47D_Burge_Thompson.30209	0	.	56830446	56832479	0	1	2033	0
chr20	56831481	56832703	NEC_from_H9.77172	0	.	56831481	56832703	0	1	1222	0
chr20	56831739	56832411	BT474_Burge_Thompson.37058	0	.	56831739	56832411	0	1	672	0
chr20	56833114	56834795	melanoma_Garraway_short_term_cultures.71321	0	.	56833114	56834795	0	1	1681	0
chr20	56834022	56834549	NEC_from_H9.77173	0	.	56834022	56834549	0	1	527	0
chr20	56835412	56837311	B_cells_Cheung.200356	0	.	56835412	56837311	0	1	1899	0
chr20	56835426	56837291	B_Cells_Pritchard.3285897	0	.	56835426	56837291	0	1	1865	0
chr20	56835434	56837334	H9_polyA+.46867	0	.	56835434	56837334	0	1	1900	0
chr20	56835447	56837243	melanoma_Garraway_short_term_cultures.71323	0	.	56835447	56837243	0	1	1796	0
chr20	56836398	56837293	T47D_Burge_Thompson.30210	0	.	56836398	56837293	0	1	895	0
chr20	56837424	56838975	B_cells_Cheung.200357	0	.	56837424	56838975	0	1	1551	0
chr20	56837493	56838644	B_Cells_Pritchard.3285899	0	.	56837493	56838644	0	1	1151	0
chr20	56837940	56839570	MCF7_Burge_Thompson.33395	0	.	56837940	56839570	0	1	1630	0
chr20	56838153	56839601	BT474_Burge_Thompson.37061	0	.	56838153	56839601	0	1	1448	0
chr20	56838354	56838904	T47D_Burge_Thompson.30212	0	.	56838354	56838904	0	1	550	0
chr20	56840628	56847110	H9_polyA+.46869	0	.	56840628	56847110	0	1	6482	0
chr20	56840642	56846085	B_cells_Cheung.200361	0	.	56840642	56846085	0	1	5443	0
chr20	56842061	56843266	prostate_carcinoma.102317	0	.	56842061	56843266	0	1	1205	0
chr20	56842304	56843117	T47D_Burge_Thompson.30214	0	.	56842304	56843117	0	1	813	0
chr20	56842623	56843376	melanoma_Garraway_short_term_cultures.71325	0	.	56842623	56843376	0	1	753	0
chr20	56842847	56843311	NEC_from_H9.77181	0	.	56842847	56843311	0	1	464	0
chr20	56843766	56844663	prostate_carcinoma.102318	0	.	56843766	56844663	0	1	897	0
chr20	56938544	56938993	B_cells_Cheung.200380	0	.	56938544	56938993	0	1	449	0
chr20	56956486	56976851	pHIT000035936	0	-	56956486	56976851	0	5	250,88,114,162,73	0,17319,17625,19738,20292
chr20	56976172	56977088	B_Cells_Pritchard.3286163	0	.	56976172	56977088	0	1	916	0
chr20	56976229	56976638	B_cells_Cheung.200386	0	.	56976229	56976638	0	1	409	0
chr20	56979809	56980207	B_cells_Cheung.200388	0	.	56979809	56980207	0	1	398	0
chr20	56986432	56988165	B_Cells_Pritchard.3294307	0	+	56986432	56988165	0	1	1733	0
chr20	56986597	56987982	MCF7_Burge_Thompson.33214	0	.	56986597	56987982	0	1	1385	0
chr20	57018180	57020095	REMC_LuminalBreast.101044	0	.	57018180	57020095	0	1	1915	0
chr20	57018617	57019595	B_Cells_Pritchard.3286295	0	.	57018617	57019595	0	1	978	0
chr20	57019461	57020284	REMC_BreastStem.50816	0	.	57019461	57020284	0	1	823	0
chr20	57020768	57022766	REMC_MyoepithelialBreast.94360	0	.	57020768	57022766	0	1	1998	0
chr20	57020991	57021856	REMC_BreastStem.50817	0	.	57020991	57021856	0	1	865	0
chr20	57022940	57023888	REMC_MyoepithelialBreast.94361	0	.	57022940	57023888	0	1	948	0
chr20	57022959	57023981	REMC_BreastStem.50818	0	.	57022959	57023981	0	1	1022	0
chr20	57023685	57024406	REMC_LuminalBreast.101046	0	.	57023685	57024406	0	1	721	0
chr20	57085989	57086502	B_Cells_Pritchard.3286479	0	.	57085989	57086502	0	1	513	0
chr20	57086125	57086466	MCF7_Burge_Thompson.33239	0	.	57086125	57086466	0	1	341	0
chr20	57131800	57132843	CD4_Snyder.76541	0	.	57131800	57132843	0	1	1043	0
chr20	57157137	57161688	CD4_Plagnol_resting.65309	0	.	57157137	57161688	0	1	4551	0
chr20	57157149	57160518	CD4_Plagnol_activated.67291	0	.	57157149	57160518	0	1	3369	0
chr20	57157165	57158819	CD4_Snyder.76542	0	.	57157165	57158819	0	1	1654	0
chr20	57157171	57158734	prostate_carcinoma.102349	0	.	57157171	57158734	0	1	1563	0
chr20	57160754	57161154	CD4_Snyder.76548	0	.	57160754	57161154	0	1	400	0
chr20	57163007	57164745	CD4_Plagnol_activated.67293	0	.	57163007	57164745	0	1	1738	0
chr20	57163692	57164858	CD4_Plagnol_resting.65310	0	.	57163692	57164858	0	1	1166	0
chr20	57166839	57169742	CD4_Snyder.76553	0	.	57166839	57169742	0	1	2903	0
chr20	57167514	57169801	CD4_Plagnol_activated.67295	0	.	57167514	57169801	0	1	2287	0
chr20	57167556	57169258	CD4_Plagnol_resting.65311	0	.	57167556	57169258	0	1	1702	0
chr20	57167956	57168616	B_Cells_Pritchard.3286721	0	.	57167956	57168616	0	1	660	0
chr20	57168049	57168814	prostate_carcinoma.102352	0	.	57168049	57168814	0	1	765	0
chr20	57168367	57168845	liver_polyA+.134484	0	.	57168367	57168845	0	1	478	0
chr20	57168832	57169264	B_Cells_Pritchard.3286723	0	.	57168832	57169264	0	1	432	0
chr20	57173170	57174225	CD4_Plagnol_resting.65313	0	.	57173170	57174225	0	1	1055	0
chr20	57179224	57179650	B_Cells_Pritchard.3286769	0	.	57179224	57179650	0	1	426	0
chr20	57179539	57179926	CD4_Snyder.76560	0	.	57179539	57179926	0	1	387	0
chr20	57190460	57191870	prostate_carcinoma.102355	0	.	57190460	57191870	0	1	1410	0
chr20	57192700	57193567	prostate_normal.61186	0	.	57192700	57193567	0	1	867	0
chr20	57193164	57193511	CD4_Snyder.76564	0	.	57193164	57193511	0	1	347	0
chr20	57193205	57196563	prostate_carcinoma.102357	0	.	57193205	57196563	0	1	3358	0
chr20	57194597	57196001	CD4_Plagnol_activated.67300	0	.	57194597	57196001	0	1	1404	0
chr20	57195081	57196083	B_cells_Cheung.200429	0	.	57195081	57196083	0	1	1002	0
chr20	57195201	57196000	B_Cells_Pritchard.3286847	0	.	57195201	57196000	0	1	799	0
chr20	57350829	57397052	pHIT000121431	0	-	57350829	57397052	0	4	209,62,176,93	0,22247,37513,46130
chr20	57360643	57366224	Rinn_00028078	0	-	57360643	57366224	0	2	128,467	0,5114
chr20	57360644	57366224	ENST00000424662	0	-	57360644	57366224	0	2	127,466	0,5114
chr20	57362007	57362445	A549_Myers.90706	0	.	57362007	57362445	0	1	438	0
chr20	57392029	57392345	A549_Myers.90708	0	.	57392029	57392345	0	1	316	0
chr20	57411968	57412504	A549_Myers.90709	0	.	57411968	57412504	0	1	536	0
chr20	57476327	57478285	Rinn_00028456	0	-	57476327	57478285	0	2	774,31	0,1927
chr20	57523639	57524489	Rinn_00027969	0	+	57523639	57524489	0	2	144,424	0,426
chr20	57861716	57862108	brain_AmbionMAQC.46260	0	.	57861716	57862108	0	1	392	0
chr20	57959271	57960641	REMC_LuminalBreast.101063	0	.	57959271	57960641	0	1	1370	0
chr20	57960247	57960711	B_cells_Cheung.200469	0	.	57960247	57960711	0	1	464	0
chr20	58044503	58045164	MIP101.71409	0	.	58044503	58045164	0	1	661	0
chr20	58044614	58045173	B_Cells_Pritchard.3289013	0	.	58044614	58045173	0	1	559	0
chr20	58046449	58047519	H1_polyA+.118728	0	.	58046449	58047519	0	1	1070	0
chr20	58049049	58049710	MIP101.71411	0	.	58049049	58049710	0	1	661	0
chr20	58060927	58061549	prostate_carcinoma.102374	0	.	58060927	58061549	0	1	622	0
chr20	58061606	58062637	prostate_carcinoma.102375	0	.	58061606	58062637	0	1	1031	0
chr20	58089890	58096014	Rinn_00028716	0	-	58089890	58096014	0	2	166,2229	0,3895
chr20	58091874	58095882	prostate_carcinoma.102381	0	.	58091874	58095882	0	1	4008	0
chr20	58094633	58095103	brain_AmbionMAQC.46215	0	.	58094633	58095103	0	1	470	0
chr20	58095259	58096001	testes_Burge.54849	0	.	58095259	58096001	0	1	742	0
chr20	58109378	58109836	testes_Burge.54852	0	.	58109378	58109836	0	1	458	0
chr20	58121588	58121919	A549_Myers.90739	0	.	58121588	58121919	0	1	331	0
chr20	58122126	58122492	A549_Myers.90740	0	.	58122126	58122492	0	1	366	0
chr20	58197273	58199835	REMC_LuminalBreast.101072	0	.	58197273	58199835	0	1	2562	0
chr20	58206953	58208174	REMC_LuminalBreast.101073	0	.	58206953	58208174	0	1	1221	0
chr20	58208835	58212701	melanoma_Garraway_short_term_cultures.71369	0	.	58208835	58212701	0	1	3866	0
chr20	58210459	58211059	prostate_carcinoma.102383	0	.	58210459	58211059	0	1	600	0
chr20	58211037	58212263	REMC_MyoepithelialBreast.94235	0	.	58211037	58212263	0	1	1226	0
chr20	58211664	58212513	prostate_carcinoma.102384	0	.	58211664	58212513	0	1	849	0
chr20	58215763	58219415	melanoma_Garraway_short_term_cultures.71371	0	.	58215763	58219415	0	1	3652	0
chr20	58215775	58219228	prostate_carcinoma.102390	0	.	58215775	58219228	0	1	3453	0
chr20	58215944	58219404	REMC_LuminalBreast.101076	0	.	58215944	58219404	0	1	3460	0
chr20	58217796	58218860	REMC_MyoepithelialBreast.94238	0	.	58217796	58218860	0	1	1064	0
chr20	58217959	58218833	B_cells_Cheung.200516	0	.	58217959	58218833	0	1	874	0
chr20	58220345	58224476	melanoma_Garraway_short_term_cultures.71373	0	.	58220345	58224476	0	1	4131	0
chr20	58221281	58222514	B_cells_Cheung.200520	0	.	58221281	58222514	0	1	1233	0
chr20	58221435	58222667	REMC_LuminalBreast.101078	0	.	58221435	58222667	0	1	1232	0
chr20	58221652	58222398	prostate_carcinoma.102389	0	.	58221652	58222398	0	1	746	0
chr20	58225453	58226150	B_cells_Cheung.200522	0	.	58225453	58226150	0	1	697	0
chr20	58227475	58229063	melanoma_Garraway_short_term_cultures.71376	0	.	58227475	58229063	0	1	1588	0
chr20	58227650	58227999	B_cells_Cheung.200523	0	.	58227650	58227999	0	1	349	0
chr20	58228150	58230193	REMC_LuminalBreast.101079	0	.	58228150	58230193	0	1	2043	0
chr20	58248801	58251167	REMC_LuminalBreast.101084	0	.	58248801	58251167	0	1	2366	0
chr20	58264774	58265431	B_cells_Cheung.200540	0	.	58264774	58265431	0	1	657	0
chr20	58265236	58266046	melanoma_Garraway_short_term_cultures.71380	0	.	58265236	58266046	0	1	810	0
chr20	58265529	58266208	B_cells_Cheung.200541	0	.	58265529	58266208	0	1	679	0
chr20	58287688	58288351	B_cells_Cheung.200550	0	.	58287688	58288351	0	1	663	0
chr20	58287766	58288244	B_Cells_Pritchard.3289837	0	.	58287766	58288244	0	1	478	0
chr20	58292430	58296132	REMC_LuminalBreast.101092	0	.	58292430	58296132	0	1	3702	0
chr20	58295518	58297254	REMC_MyoepithelialBreast.94257	0	.	58295518	58297254	0	1	1736	0
chr20	58295750	58296597	B_cells_Cheung.200554	0	.	58295750	58296597	0	1	847	0
chr20	58297338	58298194	REMC_LuminalBreast.101094	0	.	58297338	58298194	0	1	856	0
chr20	58303925	58305159	REMC_LuminalBreast.101097	0	.	58303925	58305159	0	1	1234	0
chr20	58304059	58305053	melanoma_Garraway_short_term_cultures.71383	0	.	58304059	58305053	0	1	994	0
chr20	58304172	58305382	REMC_MyoepithelialBreast.94262	0	.	58304172	58305382	0	1	1210	0
chr20	58304270	58305361	B_cells_Cheung.200561	0	.	58304270	58305361	0	1	1091	0
chr20	58305625	58305970	B_cells_Cheung.200562	0	.	58305625	58305970	0	1	345	0
chr20	58305629	58306297	REMC_LuminalBreast.101098	0	.	58305629	58306297	0	1	668	0
chr20	58305689	58306259	REMC_MyoepithelialBreast.94263	0	.	58305689	58306259	0	1	570	0
chr20	58307323	58308940	prostate_carcinoma.102398	0	.	58307323	58308940	0	1	1617	0
chr20	58307874	58308702	B_cells_Cheung.200565	0	.	58307874	58308702	0	1	828	0
chr20	58308024	58309130	melanoma_Garraway_short_term_cultures.71385	0	.	58308024	58309130	0	1	1106	0
chr20	58309994	58313040	REMC_LuminalBreast.101100	0	.	58309994	58313040	0	1	3046	0
chr20	58310117	58312779	melanoma_Garraway_short_term_cultures.71386	0	.	58310117	58312779	0	1	2662	0
chr20	58310194	58312252	prostate_carcinoma.102399	0	.	58310194	58312252	0	1	2058	0
chr20	58310625	58312063	REMC_MyoepithelialBreast.94265	0	.	58310625	58312063	0	1	1438	0
chr20	58313272	58315611	REMC_LuminalBreast.101101	0	.	58313272	58315611	0	1	2339	0
chr20	58313289	58315631	REMC_MyoepithelialBreast.94267	0	.	58313289	58315631	0	1	2342	0
chr20	58317766	58319156	REMC_LuminalBreast.101103	0	.	58317766	58319156	0	1	1390	0
chr20	58319040	58321002	prostate_carcinoma.102402	0	.	58319040	58321002	0	1	1962	0
chr20	58319051	58320657	melanoma_Garraway_short_term_cultures.71390	0	.	58319051	58320657	0	1	1606	0
chr20	58319060	58321082	REMC_MyoepithelialBreast.94270	0	.	58319060	58321082	0	1	2022	0
chr20	58319063	58320166	B_Cells_Pritchard.3289973	0	.	58319063	58320166	0	1	1103	0
chr20	58319070	58321003	B_cells_Cheung.200577	0	.	58319070	58321003	0	1	1933	0
chr20	58319211	58319815	REMC_LuminalBreast.101104	0	.	58319211	58319815	0	1	604	0
chr20	58319998	58321661	REMC_LuminalBreast.101105	0	.	58319998	58321661	0	1	1663	0
chr20	58321175	58323507	prostate_carcinoma.102403	0	.	58321175	58323507	0	1	2332	0
chr20	58321203	58323096	melanoma_Garraway_short_term_cultures.71391	0	.	58321203	58323096	0	1	1893	0
chr20	58322463	58323216	B_cells_Cheung.200579	0	.	58322463	58323216	0	1	753	0
chr20	58322770	58323142	prostate_normal.61224	0	.	58322770	58323142	0	1	372	0
chr20	58323288	58324149	REMC_LuminalBreast.101107	0	.	58323288	58324149	0	1	861	0
chr20	58323534	58326299	melanoma_Garraway_short_term_cultures.71392	0	.	58323534	58326299	0	1	2765	0
chr20	58323673	58324241	prostate_normal.61226	0	.	58323673	58324241	0	1	568	0
chr20	58323707	58324523	B_cells_Cheung.200581	0	.	58323707	58324523	0	1	816	0
chr20	58323855	58325078	REMC_MyoepithelialBreast.94272	0	.	58323855	58325078	0	1	1223	0
chr20	58324250	58326665	REMC_LuminalBreast.101108	0	.	58324250	58326665	0	1	2415	0
chr20	58324574	58326566	B_cells_Cheung.200582	0	.	58324574	58326566	0	1	1992	0
chr20	58328841	58330563	prostate_carcinoma.102406	0	.	58328841	58330563	0	1	1722	0
chr20	58328887	58330072	REMC_MyoepithelialBreast.94275	0	.	58328887	58330072	0	1	1185	0
chr20	58328927	58330552	melanoma_Garraway_short_term_cultures.71395	0	.	58328927	58330552	0	1	1625	0
chr20	58328973	58330014	B_cells_Cheung.200584	0	.	58328973	58330014	0	1	1041	0
chr20	58329089	58330279	B_Cells_Pritchard.3290019	0	.	58329089	58330279	0	1	1190	0
chr20	58329119	58329950	prostate_normal.61229	0	.	58329119	58329950	0	1	831	0
chr20	58329298	58329966	MDAMB231_Thompson.22881	0	.	58329298	58329966	0	1	668	0
chr20	58330200	58334363	REMC_MyoepithelialBreast.94276	0	.	58330200	58334363	0	1	4163	0
chr20	58330267	58332173	B_cells_Cheung.200587	0	.	58330267	58332173	0	1	1906	0
chr20	58330697	58332128	prostate_carcinoma.102409	0	.	58330697	58332128	0	1	1431	0
chr20	58330713	58332153	melanoma_Garraway_short_term_cultures.71396	0	.	58330713	58332153	0	1	1440	0
chr20	58330713	58332134	B_Cells_Pritchard.3290021	0	.	58330713	58332134	0	1	1421	0
chr20	58330721	58331412	prostate_normal.61231	0	.	58330721	58331412	0	1	691	0
chr20	58330741	58335811	REMC_LuminalBreast.101110	0	.	58330741	58335811	0	1	5070	0
chr20	58332281	58333197	B_cells_Cheung.200585	0	.	58332281	58333197	0	1	916	0
chr20	58337738	58339060	REMC_LuminalBreast.101112	0	.	58337738	58339060	0	1	1322	0
chr20	58339769	58340730	REMC_MyoepithelialBreast.94279	0	.	58339769	58340730	0	1	961	0
chr20	58342062	58344218	melanoma_Garraway_short_term_cultures.71398	0	.	58342062	58344218	0	1	2156	0
chr20	58342424	58344361	REMC_MyoepithelialBreast.94281	0	.	58342424	58344361	0	1	1937	0
chr20	58342883	58344353	REMC_LuminalBreast.101113	0	.	58342883	58344353	0	1	1470	0
chr20	58367360	58368391	REMC_MyoepithelialBreast.94286	0	.	58367360	58368391	0	1	1031	0
chr20	58391982	58392864	REMC_MyoepithelialBreast.94290	0	.	58391982	58392864	0	1	882	0
chr20	58392222	58393240	melanoma_Garraway_short_term_cultures.71404	0	.	58392222	58393240	0	1	1018	0
chr20	58392237	58393034	prostate_carcinoma.102415	0	.	58392237	58393034	0	1	797	0
chr20	58953922	58954260	A549_Myers.90744	0	.	58953922	58954260	0	1	338	0
chr20	59027800	59028165	A549_Myers.90746	0	.	59027800	59028165	0	1	365	0
chr20	59051775	59076940	pHIT000121447	0	-	59051775	59076940	0	5	152,225,108,124,135	0,2704,5141,14015,25030
chr20	59065638	59066101	A549_Myers.90747	0	.	59065638	59066101	0	1	463	0
chr20	59121861	59122299	A549_Myers.90748	0	.	59121861	59122299	0	1	438	0
chr20	59172215	59174221	MCF7_Burge_Thompson.33265	0	.	59172215	59174221	0	1	2006	0
chr20	59174495	59175613	MCF7_Burge_Thompson.33263	0	.	59174495	59175613	0	1	1118	0
chr20	59194035	59194551	REMC_MyoepithelialBreast.94297	0	.	59194035	59194551	0	1	516	0
chr20	59949084	59950196	HeLa_polyA+_Chen.36676	0	.	59949084	59950196	0	1	1112	0
chr20	59949979	59950476	MCF7_Burge_Thompson.33273	0	.	59949979	59950476	0	1	497	0
chr20	59950109	59950673	B_Cells_Pritchard.3293959	0	.	59950109	59950673	0	1	564	0
chr20	59950234	59950773	A549_Myers.90849	0	.	59950234	59950773	0	1	539	0
chr20	59950557	59951135	K562.46835	0	.	59950557	59951135	0	1	578	0
chr20	59956336	59959311	H1_polyA+.118904	0	.	59956336	59959311	0	1	2975	0
chr20	59956587	59956975	HepG2_Caltech_ENCODE.39825	0	.	59956587	59956975	0	1	388	0
chr20	59957162	59958687	MIP101.71416	0	.	59957162	59958687	0	1	1525	0
chr20	59957299	59958309	K562.46838	0	.	59957299	59958309	0	1	1010	0
chr20	59957652	59958327	H9_polyA+.46915	0	.	59957652	59958327	0	1	675	0
chr20	59957663	59958396	B_Cells_Pritchard.3293973	0	.	59957663	59958396	0	1	733	0
chr20	59958097	59958693	A549_Myers.90850	0	.	59958097	59958693	0	1	596	0
chr20	59960031	59960936	H1_polyA+.118905	0	.	59960031	59960936	0	1	905	0
chr20	59960052	59961112	HeLa_polyA+_Chen.36679	0	.	59960052	59961112	0	1	1060	0
chr20	59960115	59961315	prostate_normal.61275	0	.	59960115	59961315	0	1	1200	0
chr20	59960211	59960808	B_Cells_Pritchard.3293983	0	.	59960211	59960808	0	1	597	0
chr20	60074415	60076863	B_cells_Cheung.200623	0	+	60074415	60076863	0	2	727,1471	0,977
chr20	60074493	60086693	B_Cells_Pritchard.3294173	0	+	60074493	60086693	0	2	1963,230	0,11970
chr20	60075562	60076472	CD4_Plagnol_resting.65350	0	.	60075562	60076472	0	1	910	0
chr20	60075980	60076910	MIP101.71445	0	.	60075980	60076910	0	1	930	0
chr20	60081370	60082722	REMC_LuminalBreast.101142	0	.	60081370	60082722	0	1	1352	0
chr20	60093950	60094274	B_cells_Cheung.200626	0	.	60093950	60094274	0	1	324	0
chr20	60095789	60096541	A549_Myers.90883	0	.	60095789	60096541	0	1	752	0
chr20	60096602	60096916	A549_Myers.90884	0	.	60096602	60096916	0	1	314	0
chr20	60107382	60107747	BT474_Burge_Thompson.37172	0	.	60107382	60107747	0	1	365	0
chr20	60108196	60108629	B_Cells_Pritchard.3294213	0	.	60108196	60108629	0	1	433	0
chr20	60113722	60114130	B_Cells_Pritchard.3294239	0	.	60113722	60114130	0	1	408	0
chr20	60120388	60120766	B_Cells_Pritchard.3294267	0	.	60120388	60120766	0	1	378	0
chr20	60125583	60126256	B_cells_Cheung.200628	0	.	60125583	60126256	0	1	673	0
chr20	60127112	60129794	B_cells_Cheung.200629	0	.	60127112	60129794	0	1	2682	0
chr20	60127853	60128884	REMC_LuminalBreast.101143	0	.	60127853	60128884	0	1	1031	0
chr20	60127983	60128347	A549_Myers.90888	0	.	60127983	60128347	0	1	364	0
chr20	60128245	60129235	REMC_MyoepithelialBreast.94371	0	.	60128245	60129235	0	1	990	0
chr20	60212872	60215247	B_cells_Cheung.200658	0	.	60212872	60215247	0	1	2375	0
chr20	60212917	60213856	H1_polyA+.118959	0	.	60212917	60213856	0	1	939	0
chr20	60212948	60213834	BT474_Burge_Thompson.37179	0	.	60212948	60213834	0	1	886	0
chr20	60213968	60215245	BT474_Burge_Thompson.37180	0	.	60213968	60215245	0	1	1277	0
chr20	60214451	60215091	CD4_Plagnol_resting.65405	0	.	60214451	60215091	0	1	640	0
chr20	60215550	60216469	B_cells_Cheung.200659	0	.	60215550	60216469	0	1	919	0
chr20	60215550	60216395	B_Cells_Pritchard.3294359	0	.	60215550	60216395	0	1	845	0
chr20	60215558	60216840	prostate_carcinoma.102502	0	.	60215558	60216840	0	1	1282	0
chr20	60215558	60216354	CD4_Plagnol_resting.65406	0	.	60215558	60216354	0	1	796	0
chr20	60215571	60215920	CD4_Plagnol_activated.67372	0	.	60215571	60215920	0	1	349	0
chr20	60215573	60216401	BT474_Burge_Thompson.37181	0	.	60215573	60216401	0	1	828	0
chr20	60215619	60216484	melanoma_Garraway_short_term_cultures.71455	0	.	60215619	60216484	0	1	865	0
chr20	60215635	60216360	H1_polyA+.118961	0	.	60215635	60216360	0	1	725	0
chr20	60215640	60216382	brain_AmbionMAQC.46235	0	.	60215640	60216382	0	1	742	0
chr20	60215717	60216642	REMC_LuminalBreast.101154	0	.	60215717	60216642	0	1	925	0
chr20	60216564	60217480	B_Cells_Pritchard.3294361	0	.	60216564	60217480	0	1	916	0
chr20	60218370	60219283	brain_AmbionMAQC.46236	0	.	60218370	60219283	0	1	913	0
chr20	60218999	60219642	A549_Myers.90927	0	.	60218999	60219642	0	1	643	0
chr20	60231023	60231819	prostate_normal.61302	0	.	60231023	60231819	0	1	796	0
chr20	60235251	60235849	prostate_carcinoma.102733	0	.	60235251	60235849	0	1	598	0
chr20	60237484	60238109	prostate_normal.61303	0	.	60237484	60238109	0	1	625	0
chr20	60237832	60238462	H1_polyA+.118964	0	.	60237832	60238462	0	1	630	0
chr20	60237907	60238625	T47D_Burge_Thompson.30178	0	.	60237907	60238625	0	1	718	0
chr20	60238184	60239391	prostate_normal.61304	0	.	60238184	60239391	0	1	1207	0
chr20	60239020	60239396	A549_Myers.90940	0	.	60239020	60239396	0	1	376	0
chr20	60305773	60307930	ZR751_Thompson.24926	0	.	60305773	60307930	0	1	2157	0
chr20	60305800	60307758	BT20_Thompson.22880	0	.	60305800	60307758	0	1	1958	0
chr20	60306192	60307708	prostate_normal.61421	0	.	60306192	60307708	0	1	1516	0
chr20	60306216	60307908	MCF7_Burge_Thompson.33299	0	.	60306216	60307908	0	1	1692	0
chr20	60306463	60307385	MDAMB231_Thompson.22896	0	.	60306463	60307385	0	1	922	0
chr20	60306652	60307520	MeWo_Garraway.37788	0	.	60306652	60307520	0	1	868	0
chr20	60306846	60308343	CD4_Plagnol_resting.65409	0	.	60306846	60308343	0	1	1497	0
chr20	60306944	60307713	brain_AmbionMAQC.46446	0	.	60306944	60307713	0	1	769	0
chr20	60307062	60307692	BT474_Burge_Thompson.37202	0	.	60307062	60307692	0	1	630	0
chr20	60307250	60308516	A549_Myers.92845	0	+	60307250	60308516	0	2	520,40	0,1226
chr20	60308063	60308403	CD4_Plagnol_activated.67392	0	.	60308063	60308403	0	1	340	0
chr20	60308080	60309382	MCF7_Burge_Thompson.33300	0	.	60308080	60309382	0	1	1302	0
chr20	60308488	60309219	CD4_Plagnol_resting.65410	0	.	60308488	60309219	0	1	731	0
chr20	60308626	60309981	REMC_LuminalBreast.101307	0	.	60308626	60309981	0	1	1355	0
chr20	60309538	60310080	prostate_carcinoma.102749	0	.	60309538	60310080	0	1	542	0
chr20	60378414	60378852	MIP101.72762	0	.	60378414	60378852	0	1	438	0
chr20	60379107	60379544	A549_Myers.92863	0	.	60379107	60379544	0	1	437	0
chr20	60379150	60380710	MIP101.72763	0	.	60379150	60380710	0	1	1560	0
chr20	60380542	60381572	B_Cells_Pritchard.3294557	0	.	60380542	60381572	0	1	1030	0
chr20	60381021	60381402	A549_Myers.92866	0	.	60381021	60381402	0	1	381	0
chr20	60382222	60383535	REMC_LuminalBreast.101251	0	.	60382222	60383535	0	1	1313	0
chr20	60382258	60384418	B_Cells_Pritchard.3294561	0	.	60382258	60384418	0	1	2160	0
chr20	60382261	60383433	prostate_normal.61340	0	.	60382261	60383433	0	1	1172	0
chr20	60382266	60383845	H1_polyA+.118970	0	.	60382266	60383845	0	1	1579	0
chr20	60382268	60385883	HIT000047905	0	+	60382268	60385883	0	1	3615	0
chr20	60382270	60383997	B_cells_Cheung.200696	0	.	60382270	60383997	0	1	1727	0
chr20	60382296	60383539	A549_Myers.92862	0	.	60382296	60383539	0	1	1243	0
chr20	60382753	60383729	MCF10A_Thompson.22391	0	.	60382753	60383729	0	1	976	0
chr20	60382790	60383679	HepG2_Caltech_ENCODE.39889	0	.	60382790	60383679	0	1	889	0
chr20	60382903	60383452	HeLa_polyA+_Chen.36718	0	.	60382903	60383452	0	1	549	0
chr20	60383672	60384401	A549_Myers.92867	0	.	60383672	60384401	0	1	729	0
chr20	60383790	60384408	prostate_normal.61341	0	.	60383790	60384408	0	1	618	0
chr20	60383818	60384419	prostate_carcinoma.102530	0	.	60383818	60384419	0	1	601	0
chr20	60383845	60384444	MCF10A_Thompson.22392	0	.	60383845	60384444	0	1	599	0
chr20	60384115	60384443	B_cells_Cheung.200697	0	.	60384115	60384443	0	1	328	0
chr20	60384587	60387456	H1_polyA+.118971	0	.	60384587	60387456	0	1	2869	0
chr20	60384595	60387570	B_cells_Cheung.200698	0	.	60384595	60387570	0	1	2975	0
chr20	60384674	60385060	prostate_normal.61342	0	.	60384674	60385060	0	1	386	0
chr20	60384707	60387434	A549_Myers.92868	0	.	60384707	60387434	0	1	2727	0
chr20	60384763	60387494	B_Cells_Pritchard.3294563	0	+	60384763	60387494	0	1	2731	0
chr20	60384915	60394287	prostate_carcinoma.102531	0	-	60384915	60394287	0	2	78,495	0,8877
chr20	60385010	60385893	MCF10A_Thompson.22393	0	.	60385010	60385893	0	1	883	0
chr20	60385590	60386793	REMC_BreastStem.50884	0	.	60385590	60386793	0	1	1203	0
chr20	60386366	60387454	REMC_LuminalBreast.101252	0	.	60386366	60387454	0	1	1088	0
chr20	60386579	60387416	T47D_Burge_Thompson.30184	0	.	60386579	60387416	0	1	837	0
chr20	60386717	60387381	prostate_normal.61344	0	.	60386717	60387381	0	1	664	0
chr20	60386857	60387513	HeLa_polyA+_Chen.36720	0	.	60386857	60387513	0	1	656	0
chr20	60387726	60391857	B_Cells_Pritchard.3294567	0	+	60387726	60391857	0	3	66,1491,1268	0,1280,2863
chr20	60387896	60388243	MIP101.72764	0	.	60387896	60388243	0	1	347	0
chr20	60388978	60391876	B_cells_Cheung.200700	0	.	60388978	60391876	0	1	2898	0
chr20	60389016	60389407	MCF7_Burge_Thompson.33430	0	.	60389016	60389407	0	1	391	0
chr20	60389026	60389482	HeLa_polyA+_Chen.36722	0	.	60389026	60389482	0	1	456	0
chr20	60389425	60391734	HepG2_Caltech_ENCODE.39892	0	.	60389425	60391734	0	1	2309	0
chr20	60389556	60391692	HeLa_polyA+_Chen.36721	0	.	60389556	60391692	0	1	2136	0
chr20	60389605	60391781	melanoma_Garraway_short_term_cultures.71465	0	.	60389605	60391781	0	1	2176	0
chr20	60389612	60390199	brain_AmbionMAQC.46262	0	.	60389612	60390199	0	1	587	0
chr20	60389965	60390593	K562.46866	0	.	60389965	60390593	0	1	628	0
chr20	60389994	60391867	REMC_BreastStem.50885	0	.	60389994	60391867	0	1	1873	0
chr20	60390007	60392520	REMC_LuminalBreast.101254	0	-	60390007	60392520	0	2	1678,183	0,2330
chr20	60390007	60392806	REMC_LuminalBreast.101253	0	.	60390007	60392806	0	1	2799	0
chr20	60390296	60390724	ZR751_Thompson.25092	0	.	60390296	60390724	0	1	428	0
chr20	60390348	60391311	MeWo_Garraway.37762	0	.	60390348	60391311	0	1	963	0
chr20	60390414	60390864	H9_polyA+.46946	0	.	60390414	60390864	0	1	450	0
chr20	60390430	60391627	REMC_MyoepithelialBreast.94494	0	.	60390430	60391627	0	1	1197	0
chr20	60390616	60391488	MDAMB231_Thompson.24083	0	.	60390616	60391488	0	1	872	0
chr20	60391023	60391509	MB435_Burge.45227	0	.	60391023	60391509	0	1	486	0
chr20	60392010	60392804	REMC_BreastStem.50886	0	.	60392010	60392804	0	1	794	0
chr20	60392014	60393310	B_cells_Cheung.200701	0	.	60392014	60393310	0	1	1296	0
chr20	60392023	60393345	H1_polyA+.118994	0	.	60392023	60393345	0	1	1322	0
chr20	60392799	60393163	HeLa_polyA+_Chen.36724	0	.	60392799	60393163	0	1	364	0
chr20	60392823	60393278	brain_AmbionMAQC.46263	0	.	60392823	60393278	0	1	455	0
chr20	60393551	60394310	H1_polyA+.118995	0	.	60393551	60394310	0	1	759	0
chr20	60393563	60394296	B_cells_Cheung.200702	0	.	60393563	60394296	0	1	733	0
chr20	60393615	60394272	HeLa_polyA+_Chen.36725	0	.	60393615	60394272	0	1	657	0
chr20	60393809	60394234	K562.46868	0	.	60393809	60394234	0	1	425	0
chr20	60437037	60437379	A549_Myers.90984	0	.	60437037	60437379	0	1	342	0
chr20	60437312	60438159	prostate_carcinoma.102536	0	.	60437312	60438159	0	1	847	0
chr20	60458623	60459260	A549_Myers.90987	0	.	60458623	60459260	0	1	637	0
chr20	60467934	60468326	A549_Myers.90991	0	.	60467934	60468326	0	1	392	0
chr20	60468955	60469322	A549_Myers.90992	0	.	60468955	60469322	0	1	367	0
chr20	60486226	60486789	T47D_Burge_Thompson.30203	0	.	60486226	60486789	0	1	563	0
chr20	60486256	60486852	A549_Myers.91001	0	.	60486256	60486852	0	1	596	0
chr20	60489048	60499640	Rinn_00028260	0	+	60489048	60499640	0	2	672,8271	0,2321
chr20	60489944	60499640	Rinn_00028261	0	+	60489944	60499640	0	2	6471,2668	0,7028
chr20	60490377	60491043	A549_Myers.91002	0	.	60490377	60491043	0	1	666	0
chr20	60491150	60491557	A549_Myers.91003	0	.	60491150	60491557	0	1	407	0
chr20	60492181	60492547	A549_Myers.91004	0	.	60492181	60492547	0	1	366	0
chr20	60504246	60504880	A549_Myers.91006	0	.	60504246	60504880	0	1	634	0
chr20	60508590	60509427	A549_Myers.91009	0	-	60508590	60509427	0	2	347,191	0,646
chr20	60508590	60509427	A549_Myers.91008	0	.	60508590	60509427	0	1	837	0
chr20	60508858	60509444	B_Cells_Pritchard.3294875	0	.	60508858	60509444	0	1	586	0
chr20	60510465	60515448	B_Cells_Pritchard.3294881	0	+	60510465	60515448	0	1	4983	0
chr20	60510526	60511994	REMC_LuminalBreast.101263	0	.	60510526	60511994	0	1	1468	0
chr20	60510540	60514982	B_cells_Cheung.200705	0	.	60510540	60514982	0	1	4442	0
chr20	60511512	60515040	REMC_LuminalBreast.101265	0	+	60511512	60515040	0	2	33,2480	0,1048
chr20	60512078	60515040	REMC_LuminalBreast.101264	0	.	60512078	60515040	0	1	2962	0
chr20	60515042	60515535	B_cells_Cheung.200706	0	.	60515042	60515535	0	1	493	0
chr20	60516546	60517044	B_Cells_Pritchard.3294887	0	.	60516546	60517044	0	1	498	0
chr20	60516733	60517068	A549_Myers.91011	0	.	60516733	60517068	0	1	335	0
chr20	60517580	60518172	B_Cells_Pritchard.3294891	0	.	60517580	60518172	0	1	592	0
chr20	60519304	60519720	B_Cells_Pritchard.3294899	0	.	60519304	60519720	0	1	416	0
chr20	60519845	60520204	B_Cells_Pritchard.3294901	0	.	60519845	60520204	0	1	359	0
chr20	60520339	60521883	B_Cells_Pritchard.3294903	0	.	60520339	60521883	0	1	1544	0
chr20	60521627	60522385	BT474_Burge_Thompson.37216	0	.	60521627	60522385	0	1	758	0
chr20	60521945	60522375	B_cells_Cheung.200709	0	.	60521945	60522375	0	1	430	0
chr20	60522010	60523045	B_Cells_Pritchard.3294905	0	.	60522010	60523045	0	1	1035	0
chr20	60522343	60524547	HIT000094735	0	-	60522343	60524547	0	1	2204	0
chr20	60522447	60523183	BT474_Burge_Thompson.37217	0	.	60522447	60523183	0	1	736	0
chr20	60523264	60523894	BT474_Burge_Thompson.37218	0	.	60523264	60523894	0	1	630	0
chr20	60581883	60582477	prostate_carcinoma.102542	0	.	60581883	60582477	0	1	594	0
chr20	60583239	60584965	HIT000049675	0	+	60583239	60584965	0	1	1726	0
chr20	60583642	60584425	B_Cells_Pritchard.3295009	0	.	60583642	60584425	0	1	783	0
chr20	60584274	60585159	XR_078911	0	+	60584274	60585159	0	1	885	0
chr20	60585428	60587010	B_Cells_Pritchard.3295015	0	.	60585428	60587010	0	1	1582	0
chr20	60586037	60587259	B_cells_Cheung.200713	0	.	60586037	60587259	0	1	1222	0
chr20	60587420	60587808	B_cells_Cheung.200714	0	.	60587420	60587808	0	1	388	0
chr20	60587927	60588527	B_Cells_Pritchard.3295019	0	.	60587927	60588527	0	1	600	0
chr20	60588586	60588895	A549_Myers.91027	0	.	60588586	60588895	0	1	309	0
chr20	60588667	60589047	B_Cells_Pritchard.3295021	0	.	60588667	60589047	0	1	380	0
chr20	60589198	60592678	B_Cells_Pritchard.3295023	0	-	60589198	60592678	0	1	3480	0
chr20	60589411	60590984	B_cells_Cheung.200716	0	.	60589411	60590984	0	1	1573	0
chr20	60591037	60592666	B_cells_Cheung.200717	0	.	60591037	60592666	0	1	1629	0
chr20	60593324	60593936	B_cells_Cheung.200718	0	.	60593324	60593936	0	1	612	0
chr20	60594524	60594990	B_cells_Cheung.200719	0	.	60594524	60594990	0	1	466	0
chr20	60594571	60595589	B_Cells_Pritchard.3295035	0	.	60594571	60595589	0	1	1018	0
chr20	60599199	60599557	A549_Myers.91031	0	.	60599199	60599557	0	1	358	0
chr20	60602005	60605181	BT474_Burge_Thompson.37222	0	.	60602005	60605181	0	1	3176	0
chr20	60602446	60607708	B_Cells_Pritchard.3295067	0	+	60602446	60607708	0	1	5262	0
chr20	60602518	60603670	MDAMB468_Thompson.25375	0	.	60602518	60603670	0	1	1152	0
chr20	60602674	60603848	MCF10A_Thompson.22155	0	.	60602674	60603848	0	1	1174	0
chr20	60602699	60603607	B_cells_Cheung.200722	0	.	60602699	60603607	0	1	908	0
chr20	60603000	60603798	H1_polyA+.118989	0	.	60603000	60603798	0	1	798	0
chr20	60603110	60604901	HeLa_polyA+_Chen.36738	0	.	60603110	60604901	0	1	1791	0
chr20	60604366	60604995	REMC_MyoepithelialBreast.94394	0	.	60604366	60604995	0	1	629	0
chr20	60604979	60606127	HeLa_polyA+_Chen.36739	0	.	60604979	60606127	0	1	1148	0
chr20	60605891	60607442	REMC_LuminalBreast.101268	0	.	60605891	60607442	0	1	1551	0
chr20	60605962	60606958	H1_polyA+.118990	0	.	60605962	60606958	0	1	996	0
chr20	60605965	60606881	REMC_MyoepithelialBreast.94395	0	.	60605965	60606881	0	1	916	0
chr20	60606090	60607739	prostate_carcinoma.102546	0	.	60606090	60607739	0	1	1649	0
chr20	60606127	60607866	HeLa_polyA+_Chen.36740	0	.	60606127	60607866	0	1	1739	0
chr20	60607408	60607734	A549_Myers.91035	0	.	60607408	60607734	0	1	326	0
chr20	60607501	60608088	REMC_LuminalBreast.101269	0	.	60607501	60608088	0	1	587	0
chr20	60608150	60610454	REMC_LuminalBreast.101267	0	.	60608150	60610454	0	1	2304	0
chr20	60608180	60611685	B_Cells_Pritchard.3295069	0	-	60608180	60611685	0	1	3505	0
chr20	60608456	60610410	REMC_MyoepithelialBreast.94396	0	.	60608456	60610410	0	1	1954	0
chr20	60608697	60611041	BT474_Burge_Thompson.37223	0	.	60608697	60611041	0	1	2344	0
chr20	60608861	60610172	B_cells_Cheung.200727	0	.	60608861	60610172	0	1	1311	0
chr20	60609008	60610330	H1_polyA+.118991	0	.	60609008	60610330	0	1	1322	0
chr20	60609271	60610357	prostate_carcinoma.102547	0	.	60609271	60610357	0	1	1086	0
chr20	60610233	60611092	B_cells_Cheung.200726	0	.	60610233	60611092	0	1	859	0
chr20	60611719	60612179	A549_Myers.91036	0	.	60611719	60612179	0	1	460	0
chr20	60614915	60615965	REMC_LuminalBreast.101270	0	.	60614915	60615965	0	1	1050	0
chr20	60618850	60619484	B_Cells_Pritchard.3295107	0	.	60618850	60619484	0	1	634	0
chr20	60735477	60737301	ENST00000427132	0	-	60735477	60737301	0	4	288,126,69,16	0,402,1661,1808
chr20	60736398	60736795	B_cells_Cheung.200758	0	.	60736398	60736795	0	1	397	0
chr20	60736889	60737635	B_cells_Cheung.200759	0	.	60736889	60737635	0	1	746	0
chr20	60737095	60737583	B_Cells_Pritchard.3295139	0	.	60737095	60737583	0	1	488	0
chr20	60737730	60738558	B_cells_Cheung.200760	0	.	60737730	60738558	0	1	828	0
chr20	60788934	60789416	B_cells_Cheung.200763	0	.	60788934	60789416	0	1	482	0
chr20	60788953	60792517	REMC_LuminalBreast.101287	0	.	60788953	60792517	0	1	3564	0
chr20	60788961	60789753	MIP101.71476	0	.	60788961	60789753	0	1	792	0
chr20	60788989	60790740	prostate_carcinoma.102559	0	.	60788989	60790740	0	1	1751	0
chr20	60789138	60789818	MCF7_Burge_Thompson.33323	0	.	60789138	60789818	0	1	680	0
chr20	60789142	60792429	CD4_Plagnol_activated.67413	0	.	60789142	60792429	0	1	3287	0
chr20	60789143	60790229	melanoma_Garraway_short_term_cultures.71482	0	.	60789143	60790229	0	1	1086	0
chr20	60789491	60791502	B_cells_Cheung.200764	0	.	60789491	60791502	0	1	2011	0
chr20	60790128	60790715	MB435_Burge.45153	0	.	60790128	60790715	0	1	587	0
chr20	60790942	60792382	brain_AmbionMAQC.46282	0	.	60790942	60792382	0	1	1440	0
chr20	60791024	60792393	HeLa_polyA+_Chen.36751	0	+	60791024	60792393	0	2	262,360	0,1009
chr20	60791177	60792094	MIP101.71477	0	.	60791177	60792094	0	1	917	0
chr20	60791395	60792557	melanoma_Garraway_short_term_cultures.71483	0	.	60791395	60792557	0	1	1162	0
chr20	60791900	60792511	BT474_Burge_Thompson.37239	0	.	60791900	60792511	0	1	611	0
chr20	60792048	60792515	B_cells_Cheung.200766	0	.	60792048	60792515	0	1	467	0
chr20	60865919	60866338	liver_polyA+.134624	0	.	60865919	60866338	0	1	419	0
chr20	60867396	60867790	A549_Myers.91075	0	.	60867396	60867790	0	1	394	0
chr20	60869447	60874314	MIP101.71483	0	.	60869447	60874314	0	1	4867	0
chr20	60870809	60871427	A549_Myers.91077	0	.	60870809	60871427	0	1	618	0
chr20	60873162	60873463	liver_polyA+.134631	0	.	60873162	60873463	0	1	301	0
chr20	60873217	60873686	K562.46892	0	.	60873217	60873686	0	1	469	0
chr20	60873778	60874326	A549_Myers.91078	0	.	60873778	60874326	0	1	548	0
chr20	60874286	60878738	T47D_Burge_Thompson.30206	0	-	60874286	60878738	0	2	2080,1627	0,2825
chr20	60874422	60878742	K562.46893	0	-	60874422	60878742	0	3	1944,165,490	0,2689,3830
chr20	60874483	60878706	liver_polyA+.134633	0	-	60874483	60878706	0	2	1883,1595	0,2628
chr20	60874606	60876355	MCF7_Burge_Thompson.33336	0	.	60874606	60876355	0	1	1749	0
chr20	60874673	60877679	H1_polyA+.119007	0	-	60874673	60877679	0	2	1693,568	0,2438
chr20	60875313	60877814	HIT000017511	0	+	60875313	60877814	0	1	2501	0
chr20	60875453	60876394	HepG2_Caltech_ENCODE.39914	0	.	60875453	60876394	0	1	941	0
chr20	60876956	60877749	B_Cells_Pritchard.3295413	0	.	60876956	60877749	0	1	793	0
chr20	60877092	60878767	MCF7_Burge_Thompson.33337	0	.	60877092	60878767	0	1	1675	0
chr20	60877102	60878001	CD4_Plagnol_activated.67426	0	.	60877102	60878001	0	1	899	0
chr20	60877502	60878727	HepG2_Caltech_ENCODE.39915	0	.	60877502	60878727	0	1	1225	0
chr20	60877646	60878742	K562.46894	0	.	60877646	60878742	0	1	1096	0
chr20	60877865	60878736	H1_polyA+.119008	0	.	60877865	60878736	0	1	871	0
chr20	60877897	60878709	B_Cells_Pritchard.3295415	0	.	60877897	60878709	0	1	812	0
chr20	60877994	60878627	CD4_Plagnol_resting.65438	0	.	60877994	60878627	0	1	633	0
chr20	60878268	60878656	HeLa_polyA-_Chen.19210	0	.	60878268	60878656	0	1	388	0
chr20	60878385	60878730	A549_Myers.91079	0	.	60878385	60878730	0	1	345	0
chr20	60878889	60879524	A549_Myers.91080	0	.	60878889	60879524	0	1	635	0
chr20	60886001	60886559	A549_Myers.91081	0	.	60886001	60886559	0	1	558	0
chr20	60887184	60887595	B_Cells_Pritchard.3295449	0	.	60887184	60887595	0	1	411	0
chr20	60887373	60893907	Rinn_00028465	0	-	60887373	60893907	0	3	247,132,210	0,1368,6324
chr20	60887670	60888193	B_cells_Cheung.200772	0	.	60887670	60888193	0	1	523	0
chr20	60893691	60894009	A549_Myers.91083	0	.	60893691	60894009	0	1	318	0
chr20	60895376	60896215	A549_Myers.91084	0	.	60895376	60896215	0	1	839	0
chr20	60895388	60896750	B_Cells_Pritchard.3295457	0	.	60895388	60896750	0	1	1362	0
chr20	60903728	60904661	prostate_carcinoma.102628	0	.	60903728	60904661	0	1	933	0
chr20	60976953	60978569	H9_polyA+.46975	0	+	60976953	60978569	0	2	21,1207	0,409
chr20	60977610	60978597	HIT000389978	0	+	60977610	60978597	0	1	987	0
chr20	60977734	60978419	K562.46956	0	.	60977734	60978419	0	1	685	0
chr20	61051893	61053253	H1_polyA+.119317	0	.	61051893	61053253	0	1	1360	0
chr20	61071754	61072329	B_cells_Cheung.200799	0	.	61071754	61072329	0	1	575	0
chr20	61071780	61074834	ENST00000515451	0	+	61071780	61074834	0	2	1544,774	0,2280
chr20	61071780	61074834	HIT000048719	0	-	61071780	61074834	0	2	1483,840	0,2214
chr20	61072388	61073130	B_cells_Cheung.200800	0	.	61072388	61073130	0	1	742	0
chr20	61072489	61072963	A549_Myers.91156	0	.	61072489	61072963	0	1	474	0
chr20	61073621	61075492	B_Cells_Pritchard.3297231	0	-	61073621	61075492	0	1	1871	0
chr20	61074059	61074851	A549_Myers.91157	0	.	61074059	61074851	0	1	792	0
chr20	61076030	61078202	B_cells_Cheung.200801	0	.	61076030	61078202	0	1	2172	0
chr20	61078295	61079450	B_cells_Cheung.200802	0	.	61078295	61079450	0	1	1155	0
chr20	61081790	61092148	pHIT000036052	0	-	61081790	61092148	0	2	140,628	0,9730
chr20	61082738	61083245	A549_Myers.91161	0	.	61082738	61083245	0	1	507	0
chr20	61085734	61086378	HepG2_Caltech_ENCODE.39929	0	.	61085734	61086378	0	1	644	0
chr20	61087411	61092148	pHIT000094713	0	-	61087411	61092148	0	2	233,628	0,4109
chr20	61088387	61088951	A549_Myers.91162	0	.	61088387	61088951	0	1	564	0
chr20	61094290	61094892	BT474_Burge_Thompson.37251	0	.	61094290	61094892	0	1	602	0
chr20	61100022	61100689	BT474_Burge_Thompson.37252	0	.	61100022	61100689	0	1	667	0
chr20	61187134	61187630	A549_Myers.91183	0	.	61187134	61187630	0	1	496	0
chr20	61188608	61189152	B_Cells_Pritchard.3295899	0	.	61188608	61189152	0	1	544	0
chr20	61193119	61193583	B_Cells_Pritchard.3295921	0	.	61193119	61193583	0	1	464	0
chr20	61196212	61196774	B_Cells_Pritchard.3295939	0	.	61196212	61196774	0	1	562	0
chr20	61196287	61196690	brain_AmbionMAQC.46293	0	.	61196287	61196690	0	1	403	0
chr20	61198050	61198425	A549_Myers.91185	0	.	61198050	61198425	0	1	375	0
chr20	61198659	61199160	B_Cells_Pritchard.3295945	0	.	61198659	61199160	0	1	501	0
chr20	61200858	61201907	B_Cells_Pritchard.3295953	0	.	61200858	61201907	0	1	1049	0
chr20	61204106	61205004	ZR751_Thompson.24940	0	.	61204106	61205004	0	1	898	0
chr20	61204209	61205042	MB435_Burge.45277	0	.	61204209	61205042	0	1	833	0
chr20	61204530	61205109	prostate_carcinoma.102673	0	.	61204530	61205109	0	1	579	0
chr20	61204689	61206172	Rinn_00028262	0	+	61204689	61206172	0	2	330,822	0,661
chr20	61205153	61206161	CD4_Plagnol_activated.67449	0	.	61205153	61206161	0	1	1008	0
chr20	61205162	61206274	CD4_Plagnol_resting.65470	0	.	61205162	61206274	0	1	1112	0
chr20	61205245	61206161	MB435_Burge.45278	0	.	61205245	61206161	0	1	916	0
chr20	61205248	61206358	B_Cells_Pritchard.3295959	0	-	61205248	61206358	0	1	1110	0
chr20	61205258	61206071	prostate_normal.61401	0	.	61205258	61206071	0	1	813	0
chr20	61205261	61206160	B_cells_Cheung.200811	0	.	61205261	61206160	0	1	899	0
chr20	61205319	61206145	prostate_carcinoma.102674	0	.	61205319	61206145	0	1	826	0
chr20	61205329	61206132	ZR751_Thompson.24941	0	.	61205329	61206132	0	1	803	0
chr20	61205356	61206071	BT20_Thompson.22902	0	.	61205356	61206071	0	1	715	0
chr20	61205356	61206153	REMC_BreastStem.50903	0	.	61205356	61206153	0	1	797	0
chr20	61205377	61206123	melanoma_Garraway_short_term_cultures.71534	0	.	61205377	61206123	0	1	746	0
chr20	61205442	61205914	testes_Burge.54987	0	.	61205442	61205914	0	1	472	0
chr20	61205503	61205979	colon_Burge.39278	0	.	61205503	61205979	0	1	476	0
chr20	61216926	61217257	A549_Myers.91189	0	.	61216926	61217257	0	1	331	0
chr20	61218012	61221004	Rinn_00028263	0	+	61218012	61221004	0	3	270,1788,93	0,625,2899
chr20	61221473	61269900	pHIT000036060	0	+	61221473	61269900	0	6	21,201,202,118,77,26	0,3613,6514,36668,47314,48401
chr20	61221626	61222245	A549_Myers.91191	0	.	61221626	61222245	0	1	619	0
chr20	61222960	61223279	A549_Myers.91192	0	.	61222960	61223279	0	1	319	0
chr20	61225041	61225377	A549_Myers.91193	0	.	61225041	61225377	0	1	336	0
chr20	61229269	61231256	HIT000088770	0	-	61229269	61231256	0	1	1987	0
chr20	61230214	61230554	A549_Myers.91194	0	.	61230214	61230554	0	1	340	0
chr20	61252828	61253155	A549_Myers.91196	0	.	61252828	61253155	0	1	327	0
chr20	61256368	61267021	prostate_carcinoma.102676	0	-	61256368	61267021	0	2	130,2230	0,8423
chr20	61257367	61257771	A549_Myers.91197	0	.	61257367	61257771	0	1	404	0
chr20	61264552	61275754	H1_polyA+.119031	0	-	61264552	61275754	0	2	4395,117	0,11085
chr20	61264646	61267021	prostate_carcinoma.102675	0	.	61264646	61267021	0	1	2375	0
chr20	61265049	61266189	B_Cells_Pritchard.3296157	0	.	61265049	61266189	0	1	1140	0
chr20	61265344	61269102	MIP101.71502	0	.	61265344	61269102	0	1	3758	0
chr20	61266364	61267473	B_Cells_Pritchard.3296159	0	.	61266364	61267473	0	1	1109	0
chr20	61267092	61268921	prostate_carcinoma.102677	0	.	61267092	61268921	0	1	1829	0
chr20	61267422	61268914	REMC_MyoepithelialBreast.94420	0	.	61267422	61268914	0	1	1492	0
chr20	61267835	61269029	B_Cells_Pritchard.3296161	0	.	61267835	61269029	0	1	1194	0
chr20	61267844	61268881	REMC_BreastStem.50904	0	.	61267844	61268881	0	1	1037	0
chr20	61268040	61268937	B_cells_Cheung.200813	0	.	61268040	61268937	0	1	897	0
chr20	61268045	61268747	prostate_normal.61402	0	.	61268045	61268747	0	1	702	0
chr20	61268670	61269122	A549_Myers.91198	0	.	61268670	61269122	0	1	452	0
chr20	61275827	61276273	A549_Myers.91202	0	.	61275827	61276273	0	1	446	0
chr20	61276476	61279630	A549_Myers.91203	0	-	61276476	61279630	0	2	191,225	0,2929
chr20	61278557	61279981	brain_AmbionMAQC.46311	0	.	61278557	61279981	0	1	1424	0
chr20	61278811	61279311	A549_Myers.91205	0	.	61278811	61279311	0	1	500	0
chr20	61279431	61280063	H1_polyA+.119034	0	.	61279431	61280063	0	1	632	0
chr20	61280711	61281188	A549_Myers.91206	0	.	61280711	61281188	0	1	477	0
chr20	61281326	61284161	H1_polyA+.119033	0	.	61281326	61284161	0	1	2835	0
chr20	61282314	61283484	brain_AmbionMAQC.46312	0	.	61282314	61283484	0	1	1170	0
chr20	61282457	61283287	prostate_carcinoma.102678	0	.	61282457	61283287	0	1	830	0
chr20	61283467	61283843	B_Cells_Pritchard.3296233	0	.	61283467	61283843	0	1	376	0
chr20	61284693	61285359	B_Cells_Pritchard.3296239	0	.	61284693	61285359	0	1	666	0
chr20	61284858	61286348	prostate_carcinoma.102679	0	.	61284858	61286348	0	1	1490	0
chr20	61285519	61288829	H1_polyA+.119036	0	.	61285519	61288829	0	1	3310	0
chr20	61287839	61288762	prostate_carcinoma.102680	0	.	61287839	61288762	0	1	923	0
chr20	61287949	61288439	A549_Myers.91212	0	.	61287949	61288439	0	1	490	0
chr20	61288020	61289203	B_Cells_Pritchard.3296249	0	.	61288020	61289203	0	1	1183	0
chr20	61288055	61289669	B_cells_Cheung.200815	0	.	61288055	61289669	0	1	1614	0
chr20	61290171	61295507	HIT000044657	0	-	61290171	61295507	0	2	2431,1112	0,4224
chr20	61290171	61295507	ENST00000504036	0	-	61290171	61295507	0	2	2431,1115	0,4221
chr20	61290315	61291825	H1_polyA+.119035	0	.	61290315	61291825	0	1	1510	0
chr20	61290979	61291364	B_Cells_Pritchard.3296427	0	-	61290979	61291364	0	1	385	0
chr20	61290979	61291470	B_Cells_Pritchard.3296425	0	+	61290979	61291470	0	1	491	0
chr20	61291105	61291581	brain_AmbionMAQC.46316	0	.	61291105	61291581	0	1	476	0
chr20	61291241	61292256	B_cells_Cheung.200817	0	.	61291241	61292256	0	1	1015	0
chr20	61294544	61295478	brain_AmbionMAQC.46318	0	.	61294544	61295478	0	1	934	0
chr20	61295464	61295883	B_Cells_Pritchard.3296457	0	+	61295464	61295883	0	1	419	0
chr20	61319058	61320305	melanoma_Garraway_short_term_cultures.71537	0	.	61319058	61320305	0	1	1247	0
chr20	61325054	61325460	A549_Myers.91218	0	.	61325054	61325460	0	1	406	0
chr20	61326319	61326792	A549_Myers.91220	0	.	61326319	61326792	0	1	473	0
chr20	61328429	61328848	A549_Myers.91221	0	.	61328429	61328848	0	1	419	0
chr20	61335372	61335710	A549_Myers.91223	0	.	61335372	61335710	0	1	338	0
chr20	61335760	61336087	A549_Myers.91224	0	.	61335760	61336087	0	1	327	0
chr20	61335907	61336417	MCF7_Burge_Thompson.33372	0	.	61335907	61336417	0	1	510	0
chr20	61480879	61481676	brain_AmbionMAQC.46347	0	.	61480879	61481676	0	1	797	0
chr20	61489180	61489815	B_Cells_Pritchard.3296787	0	.	61489180	61489815	0	1	635	0
chr20	61489223	61490007	A549_Myers.91294	0	.	61489223	61490007	0	1	784	0
chr20	61493618	61494126	B_Cells_Pritchard.3296803	0	.	61493618	61494126	0	1	508	0
chr20	61494365	61496786	Rinn_00027982	0	+	61494365	61496786	0	2	2049,123	0,2298
chr20	61494366	61496786	HIT000012881	0	-	61494366	61496786	0	2	2045,134	0,2286
chr20	61494366	61496786	ENST00000505424	0	+	61494366	61496786	0	2	2048,122	0,2298
chr20	61494391	61496772	HIT000027469	0	+	61494391	61496772	0	1	2381	0
chr20	61496106	61497216	H9_polyA+.47003	0	.	61496106	61497216	0	1	1110	0
chr20	61496675	61497029	H1_rRNA-depleted_UCSD_REMC.89863	0	.	61496675	61497029	0	1	354	0
chr20	61500380	61500715	testes_Burge.55027	0	.	61500380	61500715	0	1	335	0
chr20	61576830	61577822	H1_polyA+.119093	0	.	61576830	61577822	0	1	992	0
chr20	61579096	61580968	H1_polyA+.119094	0	.	61579096	61580968	0	1	1872	0
chr20	61579169	61581813	brain_AmbionMAQC.46349	0	.	61579169	61581813	0	1	2644	0
chr20	61579446	61581803	MCF7_Burge_Thompson.33377	0	.	61579446	61581803	0	1	2357	0
chr20	61579449	61581813	BT20_Thompson.22923	0	.	61579449	61581813	0	1	2364	0
chr20	61579726	61583129	HIT000024281	0	+	61579726	61583129	0	1	3403	0
chr20	61579876	61581045	HeLa_polyA+_Chen.36778	0	.	61579876	61581045	0	1	1169	0
chr20	61580459	61581205	A549_Myers.91326	0	.	61580459	61581205	0	1	746	0
chr20	61580492	61580891	BT474_Burge_Thompson.37287	0	.	61580492	61580891	0	1	399	0
chr20	61580515	61582088	Rinn_00028472	0	-	61580515	61582088	0	2	40,1302	0,271
chr20	61581922	61582423	MCF7_Burge_Thompson.33378	0	.	61581922	61582423	0	1	501	0
chr20	61581927	61582386	brain_AmbionMAQC.46350	0	.	61581927	61582386	0	1	459	0
chr20	61581928	61582422	BT20_Thompson.22922	0	.	61581928	61582422	0	1	494	0
chr20	61582853	61583601	HeLa_polyA+_Chen.36780	0	.	61582853	61583601	0	1	748	0
chr20	61582869	61585492	MCF7_Burge_Thompson.33379	0	.	61582869	61585492	0	1	2623	0
chr20	61583043	61583809	BT20_Thompson.22924	0	.	61583043	61583809	0	1	766	0
chr20	61583158	61585438	brain_AmbionMAQC.46351	0	.	61583158	61585438	0	1	2280	0
chr20	61584057	61585154	BT474_Burge_Thompson.37288	0	.	61584057	61585154	0	1	1097	0
chr20	61584189	61584803	T47D_Burge_Thompson.30256	0	.	61584189	61584803	0	1	614	0
chr20	61584280	61585198	A549_Myers.91328	0	.	61584280	61585198	0	1	918	0
chr20	61584415	61584871	HeLa_polyA+_Chen.36781	0	.	61584415	61584871	0	1	456	0
chr20	61584422	61585001	BT20_Thompson.22925	0	.	61584422	61585001	0	1	579	0
chr20	61585679	61586028	brain_AmbionMAQC.46352	0	.	61585679	61586028	0	1	349	0
chr20	61585711	61586841	BT474_Burge_Thompson.37289	0	.	61585711	61586841	0	1	1130	0
chr20	61585711	61587080	MCF7_Burge_Thompson.33380	0	.	61585711	61587080	0	1	1369	0
chr20	61586129	61586459	A549_Myers.91329	0	.	61586129	61586459	0	1	330	0
chr20	61586140	61587085	HeLa_polyA+_Chen.36782	0	.	61586140	61587085	0	1	945	0
chr20	61586210	61586995	T47D_Burge_Thompson.30259	0	.	61586210	61586995	0	1	785	0
chr20	61587723	61588712	H1_polyA+.119095	0	.	61587723	61588712	0	1	989	0
chr20	61933488	61935047	A549_Myers.91421	0	.	61933488	61935047	0	1	1559	0
chr20	61934350	61935122	REMC_BreastStem.50930	0	.	61934350	61935122	0	1	772	0
chr20	61936203	61937142	REMC_LuminalBreast.101371	0	.	61936203	61937142	0	1	939	0
chr20	61936910	61937690	A549_Myers.91423	0	.	61936910	61937690	0	1	780	0
chr20	61943600	61945099	REMC_LuminalBreast.101375	0	.	61943600	61945099	0	1	1499	0
chr20	61947863	61948445	B_cells_Cheung.200929	0	.	61947863	61948445	0	1	582	0
chr20	61947923	61948492	B_Cells_Pritchard.3297581	0	.	61947923	61948492	0	1	569	0
chr20	61947965	61949262	REMC_BreastStem.50933	0	.	61947965	61949262	0	1	1297	0
chr20	61948181	61949342	BT474_Burge_Thompson.37350	0	.	61948181	61949342	0	1	1161	0
chr20	61948306	61950050	REMC_LuminalBreast.101377	0	.	61948306	61950050	0	1	1744	0
chr20	61949174	61949633	B_Cells_Pritchard.3297587	0	.	61949174	61949633	0	1	459	0
chr20	61951533	61952111	B_Cells_Pritchard.3297597	0	.	61951533	61952111	0	1	578	0
chr20	61951589	61952082	prostate_carcinoma.102726	0	.	61951589	61952082	0	1	493	0
chr20	61953581	61955586	REMC_LuminalBreast.101380	0	.	61953581	61955586	0	1	2005	0
chr20	61953721	61954391	B_cells_Cheung.200932	0	.	61953721	61954391	0	1	670	0
chr20	61953941	61954349	prostate_carcinoma.102728	0	.	61953941	61954349	0	1	408	0
chr20	61953950	61954740	REMC_MyoepithelialBreast.94477	0	.	61953950	61954740	0	1	790	0
chr20	61954816	61955855	REMC_MyoepithelialBreast.94478	0	.	61954816	61955855	0	1	1039	0
chr20	61955198	61955850	HeLa_polyA+_Chen.36813	0	.	61955198	61955850	0	1	652	0
chr20	61955261	61958418	B_Cells_Pritchard.3297621	0	-	61955261	61958418	0	1	3157	0
chr20	61955267	61955675	BT474_Burge_Thompson.37353	0	.	61955267	61955675	0	1	408	0
chr20	61955732	61958524	REMC_LuminalBreast.101381	0	.	61955732	61958524	0	1	2792	0
chr20	61956047	61956851	B_cells_Cheung.200934	0	.	61956047	61956851	0	1	804	0
chr20	61956239	61957026	MIP101.71874	0	.	61956239	61957026	0	1	787	0
chr20	61956829	61957350	MCF7_Burge_Thompson.34653	0	.	61956829	61957350	0	1	521	0
chr20	61956883	61957411	BT474_Burge_Thompson.37354	0	.	61956883	61957411	0	1	528	0
chr20	61957011	61957343	A549_Myers.91427	0	.	61957011	61957343	0	1	332	0
chr20	61957029	61957579	HeLa_polyA+_Chen.36814	0	.	61957029	61957579	0	1	550	0
chr20	61957419	61958417	B_cells_Cheung.200936	0	.	61957419	61958417	0	1	998	0
chr20	61957422	61957838	A549_Myers.91428	0	.	61957422	61957838	0	1	416	0
chr20	61957478	61958068	MCF7_Burge_Thompson.34654	0	.	61957478	61958068	0	1	590	0
chr20	61957498	61958137	prostate_normal.61451	0	.	61957498	61958137	0	1	639	0
chr20	61957645	61958329	HeLa_polyA+_Chen.36815	0	.	61957645	61958329	0	1	684	0
chr20	61958671	61959067	B_cells_Cheung.200937	0	.	61958671	61959067	0	1	396	0
chr20	62246034	62246377	A549_Myers.91473	0	.	62246034	62246377	0	1	343	0
chr20	62251306	62252043	A549_Myers.91474	0	+	62251306	62252043	0	2	417,88	0,649
chr20	62258136	62260392	B_Cells_Pritchard.3298117	0	.	62258136	62260392	0	1	2256	0
chr20	62259559	62260260	H1_polyA+.119237	0	.	62259559	62260260	0	1	701	0
chr20	62260763	62261926	brain_AmbionMAQC.46464	0	.	62260763	62261926	0	1	1163	0
chr20	62347882	62350028	brain_AmbionMAQC.46486	0	.	62347882	62350028	0	1	2146	0
chr20	62347894	62348354	A549_Myers.91485	0	.	62347894	62348354	0	1	460	0
chr20	62349846	62350632	HepG2_Caltech_ENCODE.40180	0	.	62349846	62350632	0	1	786	0
chr20	62380863	62382044	B_Cells_Pritchard.3298387	0	.	62380863	62382044	0	1	1181	0
chr20	62381078	62381667	B_cells_Cheung.200966	0	.	62381078	62381667	0	1	589	0
chr20	62381351	62381681	CD4_Plagnol_resting.65605	0	.	62381351	62381681	0	1	330	0
chr20	62420181	62420744	brain_AmbionMAQC.46498	0	.	62420181	62420744	0	1	563	0
chr21	9795582	9796564	BT474_Burge_Thompson.37385	0	.	9795582	9796564	0	1	982	0
chr21	9800736	9801295	BT474_Burge_Thompson.37386	0	.	9800736	9801295	0	1	559	0
chr21	9801861	9802576	B_Cells_Pritchard.3298625	0	-	9801861	9802576	0	1	715	0
chr21	9802062	9802622	BT474_Burge_Thompson.37387	0	.	9802062	9802622	0	1	560	0
chr21	9805146	9805459	CD4_Snyder.76782	0	.	9805146	9805459	0	1	313	0
chr21	9825746	9826139	CD4_Snyder.76783	0	.	9825746	9826139	0	1	393	0
chr21	9831919	9832312	BT474_Burge_Thompson.37391	0	.	9831919	9832312	0	1	393	0
chr21	9848761	9849163	B_Cells_Pritchard.3298673	0	-	9848761	9849163	0	1	402	0
chr21	9855730	9856030	CD4_Snyder.76781	0	.	9855730	9856030	0	1	300	0
chr21	10131827	10132637	melanoma_Garraway_short_term_cultures.71705	0	.	10131827	10132637	0	1	810	0
chr21	10131970	10132340	A549_Myers.91499	0	.	10131970	10132340	0	1	370	0
chr21	10131984	10132626	B_Cells_Pritchard.3299197	0	.	10131984	10132626	0	1	642	0
chr21	10132880	10133615	melanoma_Garraway_short_term_cultures.71706	0	.	10132880	10133615	0	1	735	0
chr21	10137491	10138179	melanoma_Garraway_short_term_cultures.71711	0	.	10137491	10138179	0	1	688	0
chr21	10137495	10138115	K562.47060	0	.	10137495	10138115	0	1	620	0
chr21	10155355	10155998	B_Cells_Pritchard.3299317	0	-	10155355	10155998	0	1	643	0
chr21	10165512	10166274	B_Cells_Pritchard.3299373	0	.	10165512	10166274	0	1	762	0
chr21	10186127	10186625	K562.47067	0	.	10186127	10186625	0	1	498	0
chr21	10190241	10190742	K562.47075	0	.	10190241	10190742	0	1	501	0
chr21	13973491	13975330	HIT000045550_02	0	-	13973491	13975330	0	1	1839	0
chr21	13973846	13974276	BT474_Burge_Thompson.37394	0	.	13973846	13974276	0	1	430	0
chr21	13973861	13976403	pHIT000121664	0	-	13973861	13976403	0	3	504,366,108	0,1317,2434
chr21	13988712	13999353	pHIT000121667	0	+	13988712	13999353	0	2	14,412	0,10229
chr21	13988712	13999425	pHIT000121665	0	+	13988712	13999425	0	2	14,484	0,10229
chr21	14137269	14142912	HIT000056747	0	-	14137269	14142912	0	1	5643	0
chr21	14137324	14142556	ENST00000428301	0	-	14137324	14142556	0	6	300,114,270,129,191,275	0,889,1872,2880,3626,4957
chr21	14137324	14142556	NR_026755	0	-	14137324	14142556	0	6	300,114,270,129,191,275	0,889,1872,2880,3626,4957
chr21	14137333	14142556	HIT000083601	0	-	14137333	14142556	0	6	291,114,270,129,191,275	0,880,1863,2871,3617,4948
chr21	14144420	14145277	B_cells_Cheung.200983	0	.	14144420	14145277	0	1	857	0
chr21	14204318	14211036	ENST00000424870	0	-	14204318	14211036	0	5	41,54,46,223,98	0,369,1591,5060,6620
chr21	14204324	14211036	ENST00000415250	0	-	14204324	14211036	0	6	35,54,46,223,6,98	0,363,1585,5054,6516,6614
chr21	14229240	14231106	B_Cells_Pritchard.3299899	0	+	14229240	14231106	0	6	529,44,29,39,185,314	0,562,616,831,1362,1552
chr21	14229417	14229994	B_cells_Cheung.200988	0	.	14229417	14229994	0	1	577	0
chr21	14230108	14231179	B_cells_Cheung.200989	0	.	14230108	14231179	0	1	1071	0
chr21	14331920	14343143	H1_polyA+.119256	0	.	14331920	14343143	0	1	11223	0
chr21	14333382	14346003	B_cells_Cheung.201015	0	.	14333382	14346003	0	1	12621	0
chr21	14337768	14343782	B_Cells_Pritchard.3300023	0	-	14337768	14343782	0	1	6014	0
chr21	14338385	14340460	REMC_MyoepithelialBreast.94553	0	.	14338385	14340460	0	1	2075	0
chr21	14339545	14341068	REMC_LuminalBreast.101443	0	.	14339545	14341068	0	1	1523	0
chr21	14339652	14339976	H1_rRNA-depleted_UCSD_REMC.90022	0	.	14339652	14339976	0	1	324	0
chr21	14346657	14352212	B_Cells_Pritchard.3300029	0	-	14346657	14352212	0	3	841,472,2585	0,2170,2970
chr21	14346657	14352212	B_Cells_Pritchard.3300027	0	+	14346657	14352212	0	5	1627,904,894,828,552	0,1733,2721,3917,5003
chr21	14346979	14349535	B_cells_Cheung.201004	0	.	14346979	14349535	0	1	2556	0
chr21	14347736	14352464	H1_polyA+.119258	0	.	14347736	14352464	0	1	4728	0
chr21	14347761	14349087	REMC_LuminalBreast.101446	0	.	14347761	14349087	0	1	1326	0
chr21	14348336	14349604	REMC_MyoepithelialBreast.94559	0	.	14348336	14349604	0	1	1268	0
chr21	14348840	14349523	HeLa_polyA+_Chen.36909	0	.	14348840	14349523	0	1	683	0
chr21	14348886	14349334	H9_polyA+.47120	0	.	14348886	14349334	0	1	448	0
chr21	14349641	14350357	B_cells_Cheung.201005	0	.	14349641	14350357	0	1	716	0
chr21	14350426	14352236	H9_polyA+.47121	0	.	14350426	14352236	0	1	1810	0
chr21	14350751	14352212	B_cells_Cheung.201007	0	.	14350751	14352212	0	1	1461	0
chr21	14350784	14351623	HeLa_polyA+_Chen.36912	0	.	14350784	14351623	0	1	839	0
chr21	14350790	14351326	REMC_LuminalBreast.101448	0	.	14350790	14351326	0	1	536	0
chr21	14350849	14351276	brain_AmbionMAQC.46524	0	.	14350849	14351276	0	1	427	0
chr21	14352728	14353119	H9_polyA+.47123	0	.	14352728	14353119	0	1	391	0
chr21	14352733	14353119	HeLa_polyA+_Chen.36913	0	.	14352733	14353119	0	1	386	0
chr21	14352748	14353104	B_cells_Cheung.201009	0	.	14352748	14353104	0	1	356	0
chr21	14352753	14353130	H1_polyA+.119259	0	.	14352753	14353130	0	1	377	0
chr21	14353211	14353810	H1_polyA+.119260	0	.	14353211	14353810	0	1	599	0
chr21	14353214	14353764	B_Cells_Pritchard.3300035	0	.	14353214	14353764	0	1	550	0
chr21	14353215	14353759	B_cells_Cheung.201010	0	.	14353215	14353759	0	1	544	0
chr21	14353424	14353775	H9_polyA+.47124	0	.	14353424	14353775	0	1	351	0
chr21	14363395	14364351	REMC_LuminalBreast.101449	0	.	14363395	14364351	0	1	956	0
chr21	14363892	14364623	HeLa_polyA+_Chen.36915	0	.	14363892	14364623	0	1	731	0
chr21	14364400	14365006	BT474_Burge_Thompson.37397	0	.	14364400	14365006	0	1	606	0
chr21	14365305	14365795	HeLa_polyA+_Chen.36917	0	.	14365305	14365795	0	1	490	0
chr21	14365511	14365893	H9_polyA+.47127	0	.	14365511	14365893	0	1	382	0
chr21	14365952	14367932	H9_polyA+.47128	0	.	14365952	14367932	0	1	1980	0
chr21	14366419	14368317	REMC_MyoepithelialBreast.94560	0	.	14366419	14368317	0	1	1898	0
chr21	14366664	14367176	melanoma_Garraway_short_term_cultures.71744	0	.	14366664	14367176	0	1	512	0
chr21	14368006	14373764	melanoma_Garraway_short_term_cultures.71745	0	.	14368006	14373764	0	1	5758	0
chr21	14368767	14370653	HeLa_polyA+_Chen.36918	0	.	14368767	14370653	0	1	1886	0
chr21	14368806	14369293	prostate_carcinoma.102800	0	.	14368806	14369293	0	1	487	0
chr21	14368843	14371192	H9_polyA+.47130	0	.	14368843	14371192	0	1	2349	0
chr21	14369263	14371910	REMC_LuminalBreast.101450	0	.	14369263	14371910	0	1	2647	0
chr21	14369574	14371219	prostate_carcinoma.102801	0	.	14369574	14371219	0	1	1645	0
chr21	14370989	14371560	H1_rRNA-depleted_UCSD_REMC.90036	0	.	14370989	14371560	0	1	571	0
chr21	14371665	14372101	H9_polyA+.47131	0	.	14371665	14372101	0	1	436	0
chr21	14379591	14382250	B_cells_Cheung.201024	0	.	14379591	14382250	0	1	2659	0
chr21	14380313	14381847	REMC_LuminalBreast.101454	0	.	14380313	14381847	0	1	1534	0
chr21	14380328	14380890	HeLa_polyA+_Chen.36945	0	.	14380328	14380890	0	1	562	0
chr21	14381587	14383878	B_Cells_Pritchard.3300071	0	+	14381587	14383878	0	2	14,344	0,1947
chr21	14382598	14386808	H1_polyA+.119270	0	.	14382598	14386808	0	1	4210	0
chr21	14382954	14386791	REMC_LuminalBreast.101455	0	.	14382954	14386791	0	1	3837	0
chr21	14383031	14383715	HeLa_polyA+_Chen.36947	0	.	14383031	14383715	0	1	684	0
chr21	14383214	14386856	B_cells_Cheung.201026	0	.	14383214	14386856	0	1	3642	0
chr21	14384878	14400182	B_Cells_Pritchard.3300085	0	-	14384878	14400182	0	10	1509,77,435,647,2122,1165,312,1205,1341,1056	0,2037,2225,3477,4359,6784,10274,10660,11878,14248
chr21	14386877	14400223	H1_polyA+.119271	0	.	14386877	14400223	0	1	13346	0
chr21	14387074	14392840	B_cells_Cheung.201028	0	.	14387074	14392840	0	1	5766	0
chr21	14387074	14388067	HeLa_polyA+_Chen.36951	0	.	14387074	14388067	0	1	993	0
chr21	14387192	14388093	MCF10A_Thompson.22234	0	.	14387192	14388093	0	1	901	0
chr21	14389124	14391233	REMC_MyoepithelialBreast.94569	0	.	14389124	14391233	0	1	2109	0
chr21	14389264	14390472	H9_polyA+.47137	0	.	14389264	14390472	0	1	1208	0
chr21	14389271	14391154	melanoma_Garraway_short_term_cultures.71753	0	.	14389271	14391154	0	1	1883	0
chr21	14389310	14390986	REMC_BreastStem.50985	0	.	14389310	14390986	0	1	1676	0
chr21	14389398	14391507	REMC_LuminalBreast.101457	0	.	14389398	14391507	0	1	2109	0
chr21	14389540	14391442	HeLa_polyA+_Chen.36952	0	.	14389540	14391442	0	1	1902	0
chr21	14391613	14393353	REMC_LuminalBreast.101458	0	.	14391613	14393353	0	1	1740	0
chr21	14391666	14394188	HeLa_polyA+_Chen.36955	0	.	14391666	14394188	0	1	2522	0
chr21	14391696	14393034	REMC_MyoepithelialBreast.94570	0	.	14391696	14393034	0	1	1338	0
chr21	14391738	14392820	melanoma_Garraway_short_term_cultures.71754	0	.	14391738	14392820	0	1	1082	0
chr21	14391755	14392551	REMC_BreastStem.50987	0	.	14391755	14392551	0	1	796	0
chr21	14392048	14392579	MeWo_Garraway.37970	0	.	14392048	14392579	0	1	531	0
chr21	14392077	14392838	H9_polyA+.47141	0	.	14392077	14392838	0	1	761	0
chr21	14392152	14392686	BT474_Burge_Thompson.37403	0	.	14392152	14392686	0	1	534	0
chr21	14392155	14392870	HepG2_Caltech_ENCODE.39992	0	.	14392155	14392870	0	1	715	0
chr21	14392158	14392659	HeLa_polyA-_Chen.19304	0	.	14392158	14392659	0	1	501	0
chr21	14392163	14392719	T47D_Burge_Thompson.30343	0	.	14392163	14392719	0	1	556	0
chr21	14392192	14392825	MCF10A_Thompson.22235	0	.	14392192	14392825	0	1	633	0
chr21	14392273	14392630	K562.47111	0	.	14392273	14392630	0	1	357	0
chr21	14392278	14392755	H9_polyA-_Chen.14966	0	.	14392278	14392755	0	1	477	0
chr21	14401224	14401787	T47D_Burge_Thompson.30345	0	.	14401224	14401787	0	1	563	0
chr21	14681626	14682020	B_Cells_Pritchard.3300639	0	.	14681626	14682020	0	1	394	0
chr21	14763550	14764289	B_Cells_Pritchard.3300911	0	.	14763550	14764289	0	1	739	0
chr21	15040167	15040596	K562.47155	0	.	15040167	15040596	0	1	429	0
chr21	15132839	15134231	REMC_MyoepithelialBreast.95254	0	.	15132839	15134231	0	1	1392	0
chr21	15134505	15138391	Rinn_00029195	0	+	15134505	15138391	0	2	1389,2420	0,1466
chr21	15134948	15137325	REMC_MyoepithelialBreast.95255	0	.	15134948	15137325	0	1	2377	0
chr21	15135376	15136305	prostate_carcinoma.102834	0	.	15135376	15136305	0	1	929	0
chr21	15135610	15136279	B_cells_Cheung.201102	0	.	15135610	15136279	0	1	669	0
chr21	15136329	15136694	B_cells_Cheung.201103	0	.	15136329	15136694	0	1	365	0
chr21	15219669	15221336	REMC_MyoepithelialBreast.95272	0	.	15219669	15221336	0	1	1667	0
chr21	15227344	15228054	REMC_MyoepithelialBreast.95273	0	.	15227344	15228054	0	1	710	0
chr21	15233597	15235922	REMC_MyoepithelialBreast.95275	0	.	15233597	15235922	0	1	2325	0
chr21	15236175	15240580	REMC_MyoepithelialBreast.95276	0	.	15236175	15240580	0	1	4405	0
chr21	15250852	15254377	REMC_MyoepithelialBreast.95282	0	.	15250852	15254377	0	1	3525	0
chr21	15583253	15584313	MCF7_Burge_Thompson.33475	0	.	15583253	15584313	0	1	1060	0
chr21	15664711	15696495	ENST00000449602	0	-	15664711	15696495	0	7	390,41,34,130,35,52,318	0,20056,23951,24478,24941,29976,31466
chr21	15714049	15715633	HepG2_Caltech_ENCODE.40032	0	.	15714049	15715633	0	1	1584	0
chr21	15715036	15715566	liver_polyA+.135036	0	.	15715036	15715566	0	1	530	0
chr21	15715798	15717664	HepG2_Caltech_ENCODE.40033	0	.	15715798	15717664	0	1	1866	0
chr21	15725294	15725963	HepG2_Caltech_ENCODE.40036	0	.	15725294	15725963	0	1	669	0
chr21	15738413	15741105	MCF10A_Thompson.22247	0	.	15738413	15741105	0	1	2692	0
chr21	16175777	16176199	CD4_Snyder.76970	0	.	16175777	16176199	0	1	422	0
chr21	16177055	16177364	melanoma_Garraway_short_term_cultures.71796	0	.	16177055	16177364	0	1	309	0
chr21	16189187	16190919	CD4_Snyder.76977	0	.	16189187	16190919	0	1	1732	0
chr21	16189288	16194175	REMC_MyoepithelialBreast.94589	0	.	16189288	16194175	0	1	4887	0
chr21	16189413	16192346	B_cells_Cheung.201211	0	.	16189413	16192346	0	1	2933	0
chr21	16189460	16192324	B_Cells_Pritchard.3304013	0	.	16189460	16192324	0	1	2864	0
chr21	16189478	16191548	melanoma_Garraway_short_term_cultures.71800	0	.	16189478	16191548	0	1	2070	0
chr21	16190012	16192376	REMC_BreastStem.51014	0	.	16190012	16192376	0	1	2364	0
chr21	16190328	16191869	H1_polyA+.119359	0	.	16190328	16191869	0	1	1541	0
chr21	16196471	16197597	REMC_BreastStem.51017	0	.	16196471	16197597	0	1	1126	0
chr21	16197838	16202128	REMC_LuminalBreast.101494	0	.	16197838	16202128	0	1	4290	0
chr21	16907791	16909714	HIT000004712	0	+	16907791	16909714	0	1	1923	0
chr21	16912964	16914143	prostate_carcinoma.102960	0	.	16912964	16914143	0	1	1179	0
chr21	16914298	16916247	REMC_MyoepithelialBreast.94602	0	.	16914298	16916247	0	1	1949	0
chr21	16915046	16917063	HeLa_polyA+_Chen.36982	0	.	16915046	16917063	0	1	2017	0
chr21	17748697	17749158	A549_Myers.91604	0	.	17748697	17749158	0	1	461	0
chr21	17748766	17749174	H1_polyA+.119328	0	.	17748766	17749174	0	1	408	0
chr21	18861953	18862573	K562.47178	0	.	18861953	18862573	0	1	620	0
chr21	19049116	19049463	K562.47221	0	.	19049116	19049463	0	1	347	0
chr21	19057218	19057907	K562.47192	0	.	19057218	19057907	0	1	689	0
chr21	19079793	19080300	K562.47226	0	.	19079793	19080300	0	1	507	0
chr21	20291869	20292255	B_cells_Cheung.201428	0	.	20291869	20292255	0	1	386	0
chr21	21020731	21097224	pHIT000036197	0	-	21020731	21097224	0	3	119,197,41	0,2261,76452
chr21	22301002	22301614	liver_polyA+.135333	0	.	22301002	22301614	0	1	612	0
chr21	22324061	22324780	melanoma_Garraway_short_term_cultures.71846	0	.	22324061	22324780	0	1	719	0
chr21	22326129	22390821	melanoma_Garraway_short_term_cultures.71847	0	-	22326129	22390821	0	4	9496,143,183,103	0,11005,30069,64589
chr21	22326129	22335640	melanoma_Garraway_short_term_cultures.71848	0	.	22326129	22335640	0	1	9511	0
chr21	22326836	22330573	prostate_carcinoma.103023	0	.	22326836	22330573	0	1	3737	0
chr21	22328545	22337384	K562.47276	0	-	22328545	22337384	0	3	7080,153,250	0,7837,8589
chr21	22328786	22334129	kidney_Gilad.87468	0	+	22328786	22334129	0	5	1553,25,27,1102,11	0,2341,2832,3321,5332
chr21	22330769	22335638	prostate_carcinoma.103027	0	+	22330769	22335638	0	2	64,579	0,4290
chr21	22332187	22333002	prostate_carcinoma.103025	0	.	22332187	22333002	0	1	815	0
chr21	22333098	22335004	kidney_Gilad.87470	0	.	22333098	22335004	0	1	1906	0
chr21	22333098	22335047	liver_polyA+.135346	0	+	22333098	22335047	0	2	111,929	0,1020
chr21	22334243	22335023	prostate_carcinoma.103029	0	.	22334243	22335023	0	1	780	0
chr21	22334325	22335106	prostate_normal.61627	0	.	22334325	22335106	0	1	781	0
chr21	22335061	22335611	MB435_Burge.45502	0	.	22335061	22335611	0	1	550	0
chr21	22335195	22335609	kidney_Gilad.87464	0	.	22335195	22335609	0	1	414	0
chr21	22382484	22388749	K562.47286	0	-	22382484	22388749	0	2	2919,464	0,5801
chr21	22382484	22387164	K562.47285	0	.	22382484	22387164	0	1	4680	0
chr21	22532825	22533201	K562.47314	0	.	22532825	22533201	0	1	376	0
chr21	22673362	22673795	K562.47306	0	.	22673362	22673795	0	1	433	0
chr21	23653383	23654661	H9_polyA+.47223	0	.	23653383	23654661	0	1	1278	0
chr21	23653422	23667616	H1_polyA+.119398	0	-	23653422	23667616	0	4	3010,1226,122,476	0,3738,13097,13718
chr21	23660991	23662058	H9_polyA+.47229	0	.	23660991	23662058	0	1	1067	0
chr21	24193369	24195289	K562.47355	0	.	24193369	24195289	0	1	1920	0
chr21	24251347	24252206	K562.47366	0	.	24251347	24252206	0	1	859	0
chr21	24337441	24344472	Rinn_00028809	0	+	24337441	24344472	0	2	81,768	0,6263
chr21	24337442	24344472	ENST00000434859	0	+	24337442	24344472	0	2	80,767	0,6263
chr21	24722924	24784492	ENST00000453784	0	+	24722924	24784492	0	6	165,181,185,120,63,2195	0,9513,12429,13055,56883,59373
chr21	24722924	24784492	HIT000044067	0	+	24722924	24784492	0	6	165,181,185,119,63,2195	0,9513,12429,13055,56883,59373
chr21	24732011	24739948	B_Cells_Pritchard.3319749	0	-	24732011	24739948	0	4	1332,2321,210,2525	0,1435,3955,5412
chr21	24733429	24735765	B_cells_Cheung.201476	0	.	24733429	24735765	0	1	2336	0
chr21	24750103	24751024	B_cells_Cheung.201447	0	.	24750103	24751024	0	1	921	0
chr21	24751151	24752735	B_cells_Cheung.201448	0	.	24751151	24752735	0	1	1584	0
chr21	24751187	24752823	B_Cells_Pritchard.3319605	0	.	24751187	24752823	0	1	1636	0
chr21	24759340	24761903	B_Cells_Pritchard.3319627	0	.	24759340	24761903	0	1	2563	0
chr21	24759353	24761058	B_cells_Cheung.201454	0	.	24759353	24761058	0	1	1705	0
chr21	24764762	24765401	B_cells_Cheung.201459	0	.	24764762	24765401	0	1	639	0
chr21	24802490	24802957	B_cells_Cheung.201487	0	.	24802490	24802957	0	1	467	0
chr21	24820527	24821199	B_Cells_Pritchard.3319863	0	.	24820527	24821199	0	1	672	0
chr21	25170500	25171453	B_Cells_Pritchard.3320513	0	.	25170500	25171453	0	1	953	0
chr21	25171193	25172267	B_cells_Cheung.201514	0	.	25171193	25172267	0	1	1074	0
chr21	25282862	25284385	B_Cells_Pritchard.3321037	0	.	25282862	25284385	0	1	1523	0
chr21	25285956	25286997	B_cells_Cheung.201557	0	.	25285956	25286997	0	1	1041	0
chr21	25301618	25302143	B_Cells_Pritchard.3321115	0	.	25301618	25302143	0	1	525	0
chr21	25318147	25320253	B_Cells_Pritchard.3321193	0	.	25318147	25320253	0	1	2106	0
chr21	25318276	25320237	B_cells_Cheung.201569	0	.	25318276	25320237	0	1	1961	0
chr21	25320533	25321957	B_cells_Cheung.201570	0	.	25320533	25321957	0	1	1424	0
chr21	25320566	25321872	B_Cells_Pritchard.3321191	0	.	25320566	25321872	0	1	1306	0
chr21	25350179	25351717	B_cells_Cheung.201579	0	.	25350179	25351717	0	1	1538	0
chr21	25379049	25380056	B_cells_Cheung.201601	0	.	25379049	25380056	0	1	1007	0
chr21	25386648	25387357	B_Cells_Pritchard.3321465	0	.	25386648	25387357	0	1	709	0
chr21	25386745	25387237	B_cells_Cheung.201603	0	.	25386745	25387237	0	1	492	0
chr21	25429099	25431279	B_Cells_Pritchard.3321633	0	.	25429099	25431279	0	1	2180	0
chr21	25543625	25546909	B_cells_Cheung.201753	0	.	25543625	25546909	0	1	3284	0
chr21	25543629	25546281	B_Cells_Pritchard.3322063	0	.	25543629	25546281	0	1	2652	0
chr21	25585528	25588749	B_cells_Cheung.201768	0	.	25585528	25588749	0	1	3221	0
chr21	25586231	25587828	B_Cells_Pritchard.3322179	0	-	25586231	25587828	0	2	972,625	0,972
chr21	25588864	25591647	B_cells_Cheung.201769	0	.	25588864	25591647	0	1	2783	0
chr21	25602826	25604043	B_cells_Cheung.201773	0	.	25602826	25604043	0	1	1217	0
chr21	25605520	25619387	B_cells_Cheung.201775	0	.	25605520	25619387	0	1	13867	0
chr21	25607065	25611177	B_Cells_Pritchard.3322279	0	.	25607065	25611177	0	1	4112	0
chr21	25634616	25640465	B_cells_Cheung.201779	0	.	25634616	25640465	0	1	5849	0
chr21	25638885	25639664	H1_polyA+.119453	0	.	25638885	25639664	0	1	779	0
chr21	25640038	25640467	H1_polyA+.119454	0	.	25640038	25640467	0	1	429	0
chr21	25646165	25646534	B_cells_Cheung.201783	0	.	25646165	25646534	0	1	369	0
chr21	25662479	25667789	B_cells_Cheung.201721	0	.	25662479	25667789	0	1	5310	0
chr21	25668015	25672806	B_cells_Cheung.201625	0	.	25668015	25672806	0	1	4791	0
chr21	25672871	25691109	B_cells_Cheung.201626	0	.	25672871	25691109	0	1	18238	0
chr21	25673027	25686948	B_Cells_Pritchard.3322333	0	-	25673027	25686948	0	2	10885,1936	0,11985
chr21	25727074	25727838	MIP101.71768	0	.	25727074	25727838	0	1	764	0
chr21	25727949	25728773	B_cells_Cheung.201636	0	.	25727949	25728773	0	1	824	0
chr21	25733612	25736537	B_cells_Cheung.201638	0	.	25733612	25736537	0	1	2925	0
chr21	25741168	25747045	B_cells_Cheung.201627	0	.	25741168	25747045	0	1	5877	0
chr21	25741235	25746316	B_Cells_Pritchard.3322431	0	-	25741235	25746316	0	3	2554,1208,888	0,2575,4193
chr21	25747376	25760913	Rinn_00028902	0	-	25747376	25760913	0	4	233,64,56,63	0,7161,13228,13474
chr21	25750211	25752062	B_cells_Cheung.201641	0	.	25750211	25752062	0	1	1851	0
chr21	25766139	25770471	B_cells_Cheung.201649	0	.	25766139	25770471	0	1	4332	0
chr21	25777304	25780949	B_cells_Cheung.201654	0	.	25777304	25780949	0	1	3645	0
chr21	25809654	25812521	Rinn_00028903	0	-	25809654	25812521	0	2	984,64	0,2803
chr21	25813359	25814579	B_cells_Cheung.201691	0	.	25813359	25814579	0	1	1220	0
chr21	25815373	25816381	B_cells_Cheung.201693	0	.	25815373	25816381	0	1	1008	0
chr21	25828068	25828713	B_Cells_Pritchard.3322625	0	.	25828068	25828713	0	1	645	0
chr21	25832677	25834139	B_cells_Cheung.201713	0	.	25832677	25834139	0	1	1462	0
chr21	25839515	25841265	B_cells_Cheung.201716	0	.	25839515	25841265	0	1	1750	0
chr21	25851159	25851473	B_cells_Cheung.201719	0	.	25851159	25851473	0	1	314	0
chr21	25854260	25856557	MIP101.71770	0	.	25854260	25856557	0	1	2297	0
chr21	25854414	25856219	prostate_carcinoma.103042	0	.	25854414	25856219	0	1	1805	0
chr21	25855175	25856130	CD4_Plagnol_activated.67691	0	.	25855175	25856130	0	1	955	0
chr21	25856034	25856455	CD4_Snyder.77053	0	.	25856034	25856455	0	1	421	0
chr21	25869500	25874381	REMC_LuminalBreast.101709	0	.	25869500	25874381	0	1	4881	0
chr21	25869946	25871342	CD4_Plagnol_activated.68727	0	.	25869946	25871342	0	1	1396	0
chr21	25870484	25871302	CD4_Plagnol_resting.65681	0	.	25870484	25871302	0	1	818	0
chr21	25875799	25876114	CD4_Plagnol_activated.68730	0	.	25875799	25876114	0	1	315	0
chr21	25876810	25877829	melanoma_Garraway_short_term_cultures.71878	0	.	25876810	25877829	0	1	1019	0
chr21	25876902	25878308	prostate_carcinoma.103049	0	.	25876902	25878308	0	1	1406	0
chr21	25876963	25877608	brain_AmbionMAQC.46591	0	.	25876963	25877608	0	1	645	0
chr21	25876965	25877484	prostate_normal.61635	0	.	25876965	25877484	0	1	519	0
chr21	25877042	25877465	HeLa_polyA+_Chen.37037	0	.	25877042	25877465	0	1	423	0
chr21	25877067	25878693	K562.47369	0	.	25877067	25878693	0	1	1626	0
chr21	25877103	25877465	CD4_Plagnol_resting.65687	0	.	25877103	25877465	0	1	362	0
chr21	26075575	26078696	REMC_LuminalBreast.101736	0	.	26075575	26078696	0	1	3121	0
chr21	26082165	26083382	REMC_LuminalBreast.101739	0	.	26082165	26083382	0	1	1217	0
chr21	26092544	26098967	REMC_LuminalBreast.101743	0	.	26092544	26098967	0	1	6423	0
chr21	26095691	26151499	pHIT000121712	0	-	26095691	26151499	0	2	113,286	0,55522
chr21	26095691	26151499	pHIT000095290	0	-	26095691	26151499	0	3	113,78,286	0,16810,55522
chr21	26095691	26151499	pHIT000036207	0	-	26095691	26151499	0	4	113,39,78,286	0,4539,16810,55522
chr21	26099084	26118766	REMC_LuminalBreast.101744	0	.	26099084	26118766	0	1	19682	0
chr21	26100593	26101721	REMC_MyoepithelialBreast.94698	0	.	26100593	26101721	0	1	1128	0
chr21	26118934	26130170	REMC_LuminalBreast.101745	0	.	26118934	26130170	0	1	11236	0
chr21	26130339	26165627	REMC_LuminalBreast.101746	0	.	26130339	26165627	0	1	35288	0
chr21	26133706	26149237	REMC_MyoepithelialBreast.94711	0	.	26133706	26149237	0	1	15531	0
chr21	26134021	26135903	REMC_BreastStem.51058	0	.	26134021	26135903	0	1	1882	0
chr21	26149788	26150555	REMC_MyoepithelialBreast.94712	0	.	26149788	26150555	0	1	767	0
chr21	26160929	26165638	REMC_MyoepithelialBreast.94716	0	.	26160929	26165638	0	1	4709	0
chr21	26163852	26165620	REMC_BreastStem.51061	0	.	26163852	26165620	0	1	1768	0
chr21	26164283	26165572	H1_polyA+.119483	0	.	26164283	26165572	0	1	1289	0
chr21	26165003	26165579	melanoma_Garraway_short_term_cultures.71907	0	.	26165003	26165579	0	1	576	0
chr21	26165780	26171378	REMC_LuminalBreast.101747	0	.	26165780	26171378	0	1	5598	0
chr21	26165928	26166857	REMC_MyoepithelialBreast.94717	0	.	26165928	26166857	0	1	929	0
chr21	26167541	26169467	REMC_BreastStem.51062	0	.	26167541	26169467	0	1	1926	0
chr21	26168297	26169511	H1_polyA+.119485	0	.	26168297	26169511	0	1	1214	0
chr21	26168379	26169432	melanoma_Garraway_short_term_cultures.71909	0	.	26168379	26169432	0	1	1053	0
chr21	26168620	26169226	B_cells_Cheung.201850	0	.	26168620	26169226	0	1	606	0
chr21	26467465	26469770	H1_polyA+.120691	0	.	26467465	26469770	0	1	2305	0
chr21	26467481	26468861	prostate_carcinoma.103110	0	.	26467481	26468861	0	1	1380	0
chr21	27172911	27173645	REMC_MyoepithelialBreast.94764	0	.	27172911	27173645	0	1	734	0
chr21	27173866	27175389	REMC_MyoepithelialBreast.94765	0	.	27173866	27175389	0	1	1523	0
chr21	27196491	27201833	REMC_MyoepithelialBreast.94771	0	.	27196491	27201833	0	1	5342	0
chr21	27265558	27268109	REMC_MyoepithelialBreast.94780	0	.	27265558	27268109	0	1	2551	0
chr21	28033576	28035923	melanoma_Garraway_short_term_cultures.71935	0	.	28033576	28035923	0	1	2347	0
chr21	28178785	28179217	B_cells_Cheung.201861	0	.	28178785	28179217	0	1	432	0
chr21	28249109	28279485	Rinn_00028826	0	+	28249109	28279485	0	3	103,215,257	0,22988,30119
chr21	28342602	28431799	Rinn_00028766	0	+	28342602	28431799	0	5	125,221,94,396,921	0,54136,82116,86900,88276
chr21	28342603	28431801	HIT000017986	0	+	28342603	28431801	0	5	124,220,93,395,922	0,54136,82116,86900,88276
chr21	28342603	28431801	ENST00000426534	0	+	28342603	28431801	0	5	124,220,93,395,922	0,54136,82116,86900,88276
chr21	28410269	28522857	HIT000098686	0	-	28410269	28522857	0	6	3795,116,66,109,108,306	0,47522,53998,96160,109804,112282
chr21	28410283	28522857	ENST00000453420	0	-	28410283	28522857	0	6	3781,116,66,109,108,306	0,47508,53984,96146,109790,112268
chr21	28442483	28443067	prostate_carcinoma.103132	0	.	28442483	28443067	0	1	584	0
chr21	28485474	28488325	prostate_carcinoma.103137	0	.	28485474	28488325	0	1	2851	0
chr21	28619106	28619443	liver_polyA+.135463	0	.	28619106	28619443	0	1	337	0
chr21	28619106	28619443	kidney_Gilad.87550	0	.	28619106	28619443	0	1	337	0
chr21	28701573	28703354	prostate_carcinoma.103155	0	.	28701573	28703354	0	1	1781	0
chr21	28849182	28854771	prostate_carcinoma.103178	0	+	28849182	28854771	0	2	581,125	0,5464
chr21	28849182	28849969	prostate_carcinoma.103177	0	.	28849182	28849969	0	1	787	0
chr21	28849195	28849566	prostate_normal.61715	0	.	28849195	28849566	0	1	371	0
chr21	28941722	28942176	prostate_carcinoma.103185	0	.	28941722	28942176	0	1	454	0
chr21	28957345	28958480	prostate_carcinoma.103186	0	.	28957345	28958480	0	1	1135	0
chr21	28957345	28957888	prostate_normal.61719	0	.	28957345	28957888	0	1	543	0
chr21	29158365	29159365	HepG2_Caltech_ENCODE.40110	0	.	29158365	29159365	0	1	1000	0
chr21	29158653	29158984	B_cells_Cheung.201875	0	.	29158653	29158984	0	1	331	0
chr21	29159568	29160566	B_cells_Cheung.201877	0	.	29159568	29160566	0	1	998	0
chr21	29219088	29219480	B_Cells_Pritchard.3329153	0	.	29219088	29219480	0	1	392	0
chr21	29219122	29219528	B_cells_Cheung.201896	0	.	29219122	29219528	0	1	406	0
chr21	29294403	29294829	REMC_LuminalBreast.101794	0	.	29294403	29294829	0	1	426	0
chr21	29294416	29294816	brain_AmbionMAQC.46650	0	.	29294416	29294816	0	1	400	0
chr21	29296303	29297111	melanoma_Garraway_short_term_cultures.71966	0	.	29296303	29297111	0	1	808	0
chr21	29296323	29296958	REMC_MyoepithelialBreast.94805	0	.	29296323	29296958	0	1	635	0
chr21	29296390	29297342	K562.47411	0	.	29296390	29297342	0	1	952	0
chr21	29296542	29296955	REMC_BreastStem.51118	0	.	29296542	29296955	0	1	413	0
chr21	29296554	29297310	brain_AmbionMAQC.46652	0	.	29296554	29297310	0	1	756	0
chr21	29296555	29296909	prostate_carcinoma.103219	0	.	29296555	29296909	0	1	354	0
chr21	29296555	29296958	liver_polyA+.135512	0	.	29296555	29296958	0	1	403	0
chr21	29296559	29296863	CD4_Plagnol_resting.65739	0	.	29296559	29296863	0	1	304	0
chr21	29296562	29296955	HeLa_polyA+_Chen.37068	0	.	29296562	29296955	0	1	393	0
chr21	29297069	29297768	CD4_Plagnol_activated.67736	0	.	29297069	29297768	0	1	699	0
chr21	29297536	29297849	CD4_Plagnol_resting.65741	0	.	29297536	29297849	0	1	313	0
chr21	29490709	29492274	B_cells_Cheung.201989	0	.	29490709	29492274	0	1	1565	0
chr21	29490965	29491605	B_Cells_Pritchard.3329589	0	.	29490965	29491605	0	1	640	0
chr21	29492909	29493442	B_Cells_Pritchard.3329595	0	.	29492909	29493442	0	1	533	0
chr21	29492922	29494066	B_cells_Cheung.201992	0	.	29492922	29494066	0	1	1144	0
chr21	29498497	29499195	B_Cells_Pritchard.3329621	0	.	29498497	29499195	0	1	698	0
chr21	29498533	29499155	B_cells_Cheung.201994	0	.	29498533	29499155	0	1	622	0
chr21	29507497	29508321	melanoma_Garraway_short_term_cultures.71990	0	.	29507497	29508321	0	1	824	0
chr21	29525042	29525764	B_Cells_Pritchard.3329721	0	.	29525042	29525764	0	1	722	0
chr21	29525130	29525754	melanoma_Garraway_short_term_cultures.71993	0	.	29525130	29525754	0	1	624	0
chr21	29586686	29590002	H1_polyA+.119541	0	.	29586686	29590002	0	1	3316	0
chr21	30495393	30495907	REMC_LuminalBreast.101903	0	.	30495393	30495907	0	1	514	0
chr21	31860147	31861339	MIP101.71961	0	.	31860147	31861339	0	1	1192	0
chr21	31876698	31877055	liver_polyA+.135764	0	.	31876698	31877055	0	1	357	0
chr21	31877329	31896132	liver_polyA+.135765	0	+	31877329	31896132	0	3	907,182,205	0,16387,18598
chr21	31898868	31899861	H1_polyA+.119654	0	.	31898868	31899861	0	1	993	0
chr21	31899316	31899856	liver_polyA+.135759	0	.	31899316	31899856	0	1	540	0
chr21	31916677	31917303	B_cells_Cheung.202257	0	.	31916677	31917303	0	1	626	0
chr21	31923305	31925816	REMC_LuminalBreast.102060	0	.	31923305	31925816	0	1	2511	0
chr21	31923416	31925179	H1_polyA+.119865	0	.	31923416	31925179	0	1	1763	0
chr21	31923612	31924851	HepG2_Caltech_ENCODE.40159	0	.	31923612	31924851	0	1	1239	0
chr21	31924136	31925086	REMC_MyoepithelialBreast.94890	0	.	31924136	31925086	0	1	950	0
chr21	31929202	31932709	REMC_LuminalBreast.102063	0	.	31929202	31932709	0	1	3507	0
chr21	31930540	31932601	H1_polyA+.119869	0	.	31930540	31932601	0	1	2061	0
chr21	31930738	31932628	B_cells_Cheung.202270	0	.	31930738	31932628	0	1	1890	0
chr21	31931514	31932668	REMC_MyoepithelialBreast.94893	0	.	31931514	31932668	0	1	1154	0
chr21	31935576	31936627	H1_polyA+.119873	0	.	31935576	31936627	0	1	1051	0
chr21	31935604	31936611	B_cells_Cheung.202274	0	.	31935604	31936611	0	1	1007	0
chr21	31939897	31941462	B_cells_Cheung.202279	0	.	31939897	31941462	0	1	1565	0
chr21	31940206	31941094	MIP101.72031	0	.	31940206	31941094	0	1	888	0
chr21	31940352	31941497	REMC_LuminalBreast.102067	0	.	31940352	31941497	0	1	1145	0
chr21	31941720	31942721	REMC_LuminalBreast.102068	0	.	31941720	31942721	0	1	1001	0
chr21	31941896	31942611	B_cells_Cheung.202281	0	.	31941896	31942611	0	1	715	0
chr21	31941900	31942623	H1_polyA+.119876	0	.	31941900	31942623	0	1	723	0
chr21	31942028	31942456	kidney_Gilad.87765	0	.	31942028	31942456	0	1	428	0
chr21	31942042	31942793	REMC_MyoepithelialBreast.94896	0	.	31942042	31942793	0	1	751	0
chr21	31942045	31942585	MIP101.72032	0	.	31942045	31942585	0	1	540	0
chr21	31947776	31953684	ENST00000449339	0	-	31947776	31953684	0	3	1835,294,104	0,4341,5804
chr21	31948340	31948679	B_Cells_Pritchard.3335431	0	-	31948340	31948679	0	1	339	0
chr21	31948381	31949192	REMC_LuminalBreast.102070	0	.	31948381	31949192	0	1	811	0
chr21	31948498	31948862	B_cells_Cheung.202362	0	.	31948498	31948862	0	1	364	0
chr21	32027302	32028291	prostate_normal.61831	0	.	32027302	32028291	0	1	989	0
chr21	32027798	32028260	H1_rRNA-depleted_UCSD_REMC.90375	0	.	32027798	32028260	0	1	462	0
chr21	32028460	32031588	H1_polyA+.119825	0	.	32028460	32031588	0	1	3128	0
chr21	32034363	32035496	H1_polyA+.119829	0	.	32034363	32035496	0	1	1133	0
chr21	32075595	32076838	B_cells_Cheung.202323	0	.	32075595	32076838	0	1	1243	0
chr21	32159821	32160966	B_Cells_Pritchard.3336143	0	.	32159821	32160966	0	1	1145	0
chr21	32160154	32160987	H1_polyA+.119837	0	.	32160154	32160987	0	1	833	0
chr21	32160314	32161589	B_cells_Cheung.202351	0	.	32160314	32161589	0	1	1275	0
chr21	32161680	32162352	REMC_BreastStem.51166	0	.	32161680	32162352	0	1	672	0
chr21	32162036	32162766	B_cells_Cheung.202353	0	.	32162036	32162766	0	1	730	0
chr21	32162098	32162470	B_Cells_Pritchard.3336147	0	.	32162098	32162470	0	1	372	0
chr21	32163178	32163626	B_Cells_Pritchard.3336157	0	.	32163178	32163626	0	1	448	0
chr21	32342911	32343859	H1_polyA+.119849	0	.	32342911	32343859	0	1	948	0
chr21	32342934	32343848	MIP101.72011	0	.	32342934	32343848	0	1	914	0
chr21	32343019	32343923	REMC_MyoepithelialBreast.94963	0	.	32343019	32343923	0	1	904	0
chr21	32343986	32346536	REMC_MyoepithelialBreast.94964	0	.	32343986	32346536	0	1	2550	0
chr21	32343998	32345242	MIP101.72012	0	.	32343998	32345242	0	1	1244	0
chr21	32355368	32357416	REMC_MyoepithelialBreast.94967	0	.	32355368	32357416	0	1	2048	0
chr21	32355458	32358030	MIP101.72016	0	.	32355458	32358030	0	1	2572	0
chr21	32356505	32357598	H1_polyA+.119858	0	.	32356505	32357598	0	1	1093	0
chr21	32364495	32365891	REMC_MyoepithelialBreast.94973	0	.	32364495	32365891	0	1	1396	0
chr21	32367596	32368895	REMC_MyoepithelialBreast.94975	0	.	32367596	32368895	0	1	1299	0
chr21	32369737	32371329	REMC_MyoepithelialBreast.94970	0	.	32369737	32371329	0	1	1592	0
chr21	32370877	32372601	H1_polyA+.119860	0	.	32370877	32372601	0	1	1724	0
chr21	32370960	32372451	MIP101.72017	0	.	32370960	32372451	0	1	1491	0
chr21	32455273	32456968	H1_polyA+.119862	0	.	32455273	32456968	0	1	1695	0
chr21	32455585	32456291	REMC_MyoepithelialBreast.94984	0	.	32455585	32456291	0	1	706	0
chr21	32459538	32460891	MIP101.72020	0	.	32459538	32460891	0	1	1353	0
chr21	32508203	32509317	REMC_MyoepithelialBreast.95215	0	.	32508203	32509317	0	1	1114	0
chr21	32549966	32551364	H1_polyA+.119972	0	.	32549966	32551364	0	1	1398	0
chr21	32553071	32559351	REMC_MyoepithelialBreast.95217	0	.	32553071	32559351	0	1	6280	0
chr21	32553965	32555767	HIT000250221	0	-	32553965	32555767	0	1	1802	0
chr21	32554407	32554890	B_Cells_Pritchard.3337365	0	.	32554407	32554890	0	1	483	0
chr21	32554517	32556438	H1_polyA+.119974	0	.	32554517	32556438	0	1	1921	0
chr21	32554625	32556895	REMC_LuminalBreast.102188	0	.	32554625	32556895	0	1	2270	0
chr21	32555193	32556783	B_Cells_Pritchard.3337369	0	.	32555193	32556783	0	1	1590	0
chr21	32555750	32556679	melanoma_Garraway_short_term_cultures.72082	0	.	32555750	32556679	0	1	929	0
chr21	32576611	32578681	CD4_Plagnol_activated.67913	0	.	32576611	32578681	0	1	2070	0
chr21	32576611	32578700	H1_polyA+.119997	0	.	32576611	32578700	0	1	2089	0
chr21	32576619	32578690	B_Cells_Pritchard.3337387	0	.	32576619	32578690	0	1	2071	0
chr21	32576696	32578657	melanoma_Garraway_short_term_cultures.72087	0	.	32576696	32578657	0	1	1961	0
chr21	32577256	32578286	T47D_Burge_Thompson.30481	0	.	32577256	32578286	0	1	1030	0
chr21	32577256	32578341	CD4_Plagnol_resting.65836	0	.	32577256	32578341	0	1	1085	0
chr21	32577293	32578361	BT20_Thompson.23088	0	.	32577293	32578361	0	1	1068	0
chr21	32577300	32578404	prostate_normal.61843	0	.	32577300	32578404	0	1	1104	0
chr21	32577309	32578734	prostate_carcinoma.103655	0	+	32577309	32578734	0	2	71,1220	0,205
chr21	32577536	32578310	BT474_Burge_Thompson.37513	0	.	32577536	32578310	0	1	774	0
chr21	32577730	32578323	HepG2_Caltech_ENCODE.40178	0	.	32577730	32578323	0	1	593	0
chr21	32577745	32578365	A549_Myers.91746	0	.	32577745	32578365	0	1	620	0
chr21	32579825	32580793	H1_polyA+.119998	0	.	32579825	32580793	0	1	968	0
chr21	32580133	32580811	B_Cells_Pritchard.3337397	0	.	32580133	32580811	0	1	678	0
chr21	32810613	32812202	REMC_LuminalBreast.102150	0	.	32810613	32812202	0	1	1589	0
chr21	32810671	32812256	H1_polyA+.119964	0	.	32810671	32812256	0	1	1585	0
chr21	32811060	32812124	prostate_carcinoma.103630	0	.	32811060	32812124	0	1	1064	0
chr21	32812536	32816818	H1_polyA+.119965	0	.	32812536	32816818	0	1	4282	0
chr21	32813215	32813803	melanoma_Garraway_short_term_cultures.72151	0	.	32813215	32813803	0	1	588	0
chr21	32813233	32815925	prostate_carcinoma.103614	0	.	32813233	32815925	0	1	2692	0
chr21	32813297	32817175	REMC_LuminalBreast.102152	0	.	32813297	32817175	0	1	3878	0
chr21	32813515	32815936	prostate_normal.61890	0	.	32813515	32815936	0	1	2421	0
chr21	32814693	32815839	REMC_MyoepithelialBreast.95128	0	.	32814693	32815839	0	1	1146	0
chr21	32815975	32816798	prostate_carcinoma.103631	0	.	32815975	32816798	0	1	823	0
chr21	32816036	32816746	prostate_normal.61905	0	.	32816036	32816746	0	1	710	0
chr21	32816113	32816708	REMC_MyoepithelialBreast.95129	0	.	32816113	32816708	0	1	595	0
chr21	32819295	32822628	H1_polyA+.119967	0	.	32819295	32822628	0	1	3333	0
chr21	32819542	32825204	REMC_LuminalBreast.102154	0	.	32819542	32825204	0	1	5662	0
chr21	32820180	32824290	prostate_carcinoma.103635	0	+	32820180	32824290	0	2	359,292	0,3818
chr21	32821713	32822262	HeLa_polyA+_Chen.37185	0	.	32821713	32822262	0	1	549	0
chr21	32822678	32825200	H1_polyA+.119968	0	.	32822678	32825200	0	1	2522	0
chr21	32823727	32824259	HeLa_polyA+_Chen.37186	0	.	32823727	32824259	0	1	532	0
chr21	32826098	32828652	H1_polyA+.119977	0	.	32826098	32828652	0	1	2554	0
chr21	32826379	32828647	MIP101.72088	0	.	32826379	32828647	0	1	2268	0
chr21	32826427	32828282	prostate_carcinoma.103638	0	.	32826427	32828282	0	1	1855	0
chr21	32826564	32828192	brain_AmbionMAQC.46718	0	.	32826564	32828192	0	1	1628	0
chr21	32826713	32828049	prostate_normal.61906	0	.	32826713	32828049	0	1	1336	0
chr21	32826774	32828533	melanoma_Garraway_short_term_cultures.72152	0	.	32826774	32828533	0	1	1759	0
chr21	32826808	32827976	HeLa_polyA+_Chen.37187	0	.	32826808	32827976	0	1	1168	0
chr21	32827048	32828663	REMC_LuminalBreast.102156	0	.	32827048	32828663	0	1	1615	0
chr21	32827122	32827879	H9_polyA+.47348	0	.	32827122	32827879	0	1	757	0
chr21	32839462	32846285	H1_polyA+.119984	0	.	32839462	32846285	0	1	6823	0
chr21	32844347	32846246	MIP101.72095	0	.	32844347	32846246	0	1	1899	0
chr21	32845037	32846003	REMC_LuminalBreast.102163	0	.	32845037	32846003	0	1	966	0
chr21	32848598	32850098	H1_polyA+.119987	0	.	32848598	32850098	0	1	1500	0
chr21	32848647	32850117	MIP101.72096	0	.	32848647	32850117	0	1	1470	0
chr21	32848750	32850146	REMC_LuminalBreast.102165	0	.	32848750	32850146	0	1	1396	0
chr21	32850334	32852025	H1_polyA+.119988	0	.	32850334	32852025	0	1	1691	0
chr21	32852172	32853580	HeLa_polyA+_Chen.37198	0	.	32852172	32853580	0	1	1408	0
chr21	32852745	32853547	melanoma_Garraway_short_term_cultures.72155	0	.	32852745	32853547	0	1	802	0
chr21	32852930	32853600	MIP101.72099	0	.	32852930	32853600	0	1	670	0
chr21	32853120	32853541	H9_polyA+.47349	0	.	32853120	32853541	0	1	421	0
chr21	32857805	32861861	REMC_LuminalBreast.102169	0	.	32857805	32861861	0	1	4056	0
chr21	32857942	32862261	H1_polyA+.119978	0	.	32857942	32862261	0	1	4319	0
chr21	32858816	32861297	HeLa_polyA+_Chen.37205	0	.	32858816	32861297	0	1	2481	0
chr21	32859196	32860227	REMC_MyoepithelialBreast.95132	0	.	32859196	32860227	0	1	1031	0
chr21	32859545	32860162	HepG2_Caltech_ENCODE.40192	0	.	32859545	32860162	0	1	617	0
chr21	32859708	32860144	melanoma_Garraway_short_term_cultures.72158	0	.	32859708	32860144	0	1	436	0
chr21	32859733	32860451	prostate_carcinoma.103650	0	.	32859733	32860451	0	1	718	0
chr21	32860070	32864104	MIP101.72097	0	-	32860070	32864104	0	2	2190,562	0,3472
chr21	32861978	32864495	REMC_LuminalBreast.102170	0	.	32861978	32864495	0	1	2517	0
chr21	32863511	32864090	HepG2_Caltech_ENCODE.40194	0	.	32863511	32864090	0	1	579	0
chr21	32863517	32863975	prostate_carcinoma.103652	0	.	32863517	32863975	0	1	458	0
chr21	32863519	32864083	HeLa_polyA-_Chen.19469	0	.	32863519	32864083	0	1	564	0
chr21	32863609	32864106	HeLa_polyA+_Chen.37206	0	.	32863609	32864106	0	1	497	0
chr21	32863614	32864100	H9_polyA+.47351	0	.	32863614	32864100	0	1	486	0
chr21	33022296	33027098	ENST00000458479	0	+	33022296	33027098	0	2	2547,398	0,4404
chr21	33023691	33027065	H1_polyA+.120038	0	.	33023691	33027065	0	1	3374	0
chr21	33025920	33027020	melanoma_Garraway_short_term_cultures.72171	0	.	33025920	33027020	0	1	1100	0
chr21	33025954	33026865	REMC_MyoepithelialBreast.95143	0	.	33025954	33026865	0	1	911	0
chr21	33026520	33027029	A549_Myers.91780	0	.	33026520	33027029	0	1	509	0
chr21	33026643	33026966	K562.47501	0	.	33026643	33026966	0	1	323	0
chr21	33273707	33274708	melanoma_Garraway_short_term_cultures.72184	0	.	33273707	33274708	0	1	1001	0
chr21	33279201	33282076	melanoma_Garraway_short_term_cultures.72185	0	.	33279201	33282076	0	1	2875	0
chr21	33314212	33314974	brain_AmbionMAQC.46754	0	.	33314212	33314974	0	1	762	0
chr21	33316609	33318798	HIT000019620	0	+	33316609	33318798	0	1	2189	0
chr21	33317163	33317851	brain_AmbionMAQC.46755	0	.	33317163	33317851	0	1	688	0
chr21	33329529	33330233	B_Cells_Pritchard.3339317	0	.	33329529	33330233	0	1	704	0
chr21	33402319	33459583	pHIT000121783	0	+	33402319	33459583	0	3	83,194,74	0,16455,57190
chr21	33485218	33485954	B_Cells_Pritchard.3339785	0	.	33485218	33485954	0	1	736	0
chr21	33497027	33497481	B_Cells_Pritchard.3339821	0	.	33497027	33497481	0	1	454	0
chr21	33498289	33498679	B_Cells_Pritchard.3339829	0	.	33498289	33498679	0	1	390	0
chr21	33499690	33500218	B_Cells_Pritchard.3339831	0	.	33499690	33500218	0	1	528	0
chr21	33501758	33502460	B_Cells_Pritchard.3339841	0	.	33501758	33502460	0	1	702	0
chr21	33502519	33502971	B_cells_Cheung.202521	0	.	33502519	33502971	0	1	452	0
chr21	33519378	33519894	B_cells_Cheung.202525	0	.	33519378	33519894	0	1	516	0
chr21	33592614	33594320	REMC_MyoepithelialBreast.95168	0	.	33592614	33594320	0	1	1706	0
chr21	33592832	33594331	B_Cells_Pritchard.3355147	0	+	33592832	33594331	0	1	1499	0
chr21	33592858	33594358	B_cells_Cheung.203403	0	.	33592858	33594358	0	1	1500	0
chr21	33593186	33593954	melanoma_Garraway_short_term_cultures.72200	0	.	33593186	33593954	0	1	768	0
chr21	33597797	33600496	B_cells_Cheung.203405	0	.	33597797	33600496	0	1	2699	0
chr21	33603104	33604485	melanoma_Garraway_short_term_cultures.72202	0	.	33603104	33604485	0	1	1381	0
chr21	33655025	33655745	adipose_Burge.40388	0	.	33655025	33655745	0	1	720	0
chr21	33655471	33655795	testes_Burge.55481	0	.	33655471	33655795	0	1	324	0
chr21	33655482	33655797	MB435_Burge.45717	0	.	33655482	33655797	0	1	315	0
chr21	33655871	33656578	brain_AmbionMAQC.46769	0	.	33655871	33656578	0	1	707	0
chr21	33655974	33657138	MIP101.72146	0	.	33655974	33657138	0	1	1164	0
chr21	33662283	33663301	REMC_LuminalBreast.102258	0	.	33662283	33663301	0	1	1018	0
chr21	33662525	33663403	REMC_MyoepithelialBreast.95179	0	.	33662525	33663403	0	1	878	0
chr21	33663517	33666427	REMC_LuminalBreast.102259	0	.	33663517	33666427	0	1	2910	0
chr21	33663768	33665157	REMC_MyoepithelialBreast.95180	0	.	33663768	33665157	0	1	1389	0
chr21	33663936	33665458	H1_polyA+.120036	0	.	33663936	33665458	0	1	1522	0
chr21	33670723	33675168	REMC_LuminalBreast.102261	0	.	33670723	33675168	0	1	4445	0
chr21	33670902	33671675	REMC_MyoepithelialBreast.95182	0	.	33670902	33671675	0	1	773	0
chr21	33670937	33671687	REMC_BreastStem.51248	0	.	33670937	33671687	0	1	750	0
chr21	33671714	33672375	B_Cells_Pritchard.3340067	0	.	33671714	33672375	0	1	661	0
chr21	33671810	33672804	H1_polyA+.120037	0	.	33671810	33672804	0	1	994	0
chr21	33675695	33676029	B_cells_Cheung.202566	0	.	33675695	33676029	0	1	334	0
chr21	33675772	33676122	B_Cells_Pritchard.3340087	0	.	33675772	33676122	0	1	350	0
chr21	33677189	33677716	A549_Myers.91810	0	.	33677189	33677716	0	1	527	0
chr21	33677254	33678241	B_Cells_Pritchard.3340091	0	.	33677254	33678241	0	1	987	0
chr21	33777904	33778434	B_Cells_Pritchard.3340383	0	.	33777904	33778434	0	1	530	0
chr21	33779715	33780037	brain_AmbionMAQC.46778	0	.	33779715	33780037	0	1	322	0
chr21	34226006	34226361	liver_polyA+.136124	0	.	34226006	34226361	0	1	355	0
chr21	34229827	34230630	MeWo_Garraway.38182	0	.	34229827	34230630	0	1	803	0
chr21	34232053	34232883	CD4_Plagnol_activated.68038	0	.	34232053	34232883	0	1	830	0
chr21	34239914	34244048	H1_polyA+.120087	0	.	34239914	34244048	0	1	4134	0
chr21	34240903	34243926	CD4_Plagnol_resting.66001	0	.	34240903	34243926	0	1	3023	0
chr21	34240914	34242730	CD4_Plagnol_activated.68049	0	.	34240914	34242730	0	1	1816	0
chr21	34241159	34242280	B_Cells_Pritchard.3341677	0	.	34241159	34242280	0	1	1121	0
chr21	34241279	34242074	MeWo_Garraway.38185	0	.	34241279	34242074	0	1	795	0
chr21	34241521	34241981	MIP101.72181	0	.	34241521	34241981	0	1	460	0
chr21	34255971	34256834	liver_polyA+.136130	0	.	34255971	34256834	0	1	863	0
chr21	34263101	34273078	H1_polyA+.120100	0	.	34263101	34273078	0	1	9977	0
chr21	34265229	34266435	H9_polyA+.47459	0	.	34265229	34266435	0	1	1206	0
chr21	34265270	34266396	B_cells_Cheung.202734	0	.	34265270	34266396	0	1	1126	0
chr21	34265301	34266640	REMC_LuminalBreast.102319	0	.	34265301	34266640	0	1	1339	0
chr21	34265370	34266405	CD4_Plagnol_activated.68036	0	.	34265370	34266405	0	1	1035	0
chr21	34265373	34266399	K562.47585	0	.	34265373	34266399	0	1	1026	0
chr21	34265380	34266415	MeWo_Garraway.38188	0	.	34265380	34266415	0	1	1035	0
chr21	34265384	34266396	prostate_carcinoma.103804	0	.	34265384	34266396	0	1	1012	0
chr21	34265391	34271982	MIP101.72189	0	-	34265391	34271982	0	2	317,1195	0,5396
chr21	34265394	34266405	CD4_Plagnol_resting.66010	0	.	34265394	34266405	0	1	1011	0
chr21	34265694	34279728	prostate_normal.62027	0	-	34265694	34279728	0	4	22,402,2845,232	0,986,3583,13802
chr21	34266528	34267918	H9_polyA+.47460	0	.	34266528	34267918	0	1	1390	0
chr21	34266648	34269007	CD4_Plagnol_resting.66011	0	.	34266648	34269007	0	1	2359	0
chr21	34266650	34269001	K562.47586	0	.	34266650	34269001	0	1	2351	0
chr21	34266656	34268974	MDAMB468_Thompson.25594	0	.	34266656	34268974	0	1	2318	0
chr21	34266659	34268986	CD4_Plagnol_activated.68061	0	.	34266659	34268986	0	1	2327	0
chr21	34266659	34268992	prostate_carcinoma.103805	0	.	34266659	34268992	0	1	2333	0
chr21	34266667	34268955	B_cells_Cheung.202735	0	.	34266667	34268955	0	1	2288	0
chr21	34266671	34269022	MIP101.72184	0	.	34266671	34269022	0	1	2351	0
chr21	34266680	34268974	prostate_normal.62026	0	.	34266680	34268974	0	1	2294	0
chr21	34266683	34269000	B_Cells_Pritchard.3341687	0	.	34266683	34269000	0	1	2317	0
chr21	34267754	34268964	MeWo_Garraway.38186	0	.	34267754	34268964	0	1	1210	0
chr21	34267981	34272887	H9_polyA+.47461	0	.	34267981	34272887	0	1	4906	0
chr21	34269215	34273003	MDAMB468_Thompson.25595	0	.	34269215	34273003	0	1	3788	0
chr21	34269215	34273044	CD4_Plagnol_activated.68062	0	.	34269215	34273044	0	1	3829	0
chr21	34269233	34273057	CD4_Plagnol_resting.66012	0	.	34269233	34273057	0	1	3824	0
chr21	34269274	34272080	MIP101.72190	0	.	34269274	34272080	0	1	2806	0
chr21	34269275	34272968	K562.47587	0	.	34269275	34272968	0	1	3693	0
chr21	34269276	34273040	prostate_carcinoma.103806	0	.	34269276	34273040	0	1	3764	0
chr21	34269407	34271988	HIT000044019	0	-	34269407	34271988	0	1	2581	0
chr21	34269649	34273078	B_cells_Cheung.202737	0	.	34269649	34273078	0	1	3429	0
chr21	34269661	34271863	REMC_LuminalBreast.102321	0	.	34269661	34271863	0	1	2202	0
chr21	34270141	34271897	MeWo_Garraway.38189	0	.	34270141	34271897	0	1	1756	0
chr21	34270336	34271175	liver_polyA+.136137	0	.	34270336	34271175	0	1	839	0
chr21	34270691	34271409	CD4_Snyder.77457	0	.	34270691	34271409	0	1	718	0
chr21	34274287	34275785	B_cells_Cheung.202741	0	.	34274287	34275785	0	1	1498	0
chr21	34274342	34276463	H1_polyA+.120105	0	.	34274342	34276463	0	1	2121	0
chr21	34274356	34275862	prostate_carcinoma.103817	0	.	34274356	34275862	0	1	1506	0
chr21	34274357	34276131	B_Cells_Pritchard.3341699	0	.	34274357	34276131	0	1	1774	0
chr21	34274413	34275669	K562.47589	0	.	34274413	34275669	0	1	1256	0
chr21	34274422	34275364	prostate_normal.62030	0	.	34274422	34275364	0	1	942	0
chr21	34274452	34276030	CD4_Plagnol_resting.66014	0	.	34274452	34276030	0	1	1578	0
chr21	34274514	34276178	CD4_Plagnol_activated.68064	0	.	34274514	34276178	0	1	1664	0
chr21	34276589	34278695	H1_polyA+.120106	0	.	34276589	34278695	0	1	2106	0
chr21	34277862	34281137	B_Cells_Pritchard.3341729	0	-	34277862	34281137	0	1	3275	0
chr21	34278539	34281013	B_cells_Cheung.202743	0	+	34278539	34281013	0	2	161,2139	0,335
chr21	34279009	34280339	H1_polyA+.120107	0	.	34279009	34280339	0	1	1330	0
chr21	34281279	34282406	B_cells_Cheung.202744	0	.	34281279	34282406	0	1	1127	0
chr21	34281350	34282380	B_Cells_Pritchard.3341731	0	.	34281350	34282380	0	1	1030	0
chr21	34281381	34282392	H1_polyA+.120108	0	.	34281381	34282392	0	1	1011	0
chr21	34283874	34296588	B_Cells_Pritchard.3341761	0	+	34283874	34296588	0	3	857,3965,83	0,7803,12631
chr21	34284892	34286842	B_Cells_Pritchard.3341769	0	+	34284892	34286842	0	1	1950	0
chr21	34284936	34286514	H1_polyA+.120109	0	.	34284936	34286514	0	1	1578	0
chr21	34286028	34286684	B_cells_Cheung.202749	0	.	34286028	34286684	0	1	656	0
chr21	34296666	34297656	B_cells_Cheung.202762	0	.	34296666	34297656	0	1	990	0
chr21	34296765	34299462	H1_polyA+.120115	0	.	34296765	34299462	0	1	2697	0
chr21	34296950	34297684	B_Cells_Pritchard.3341743	0	.	34296950	34297684	0	1	734	0
chr21	34298383	34300379	B_Cells_Pritchard.3341747	0	.	34298383	34300379	0	1	1996	0
chr21	34298410	34298752	B_cells_Cheung.202764	0	.	34298410	34298752	0	1	342	0
chr21	34298493	34299605	MIP101.72192	0	.	34298493	34299605	0	1	1112	0
chr21	34298826	34299605	B_cells_Cheung.202765	0	.	34298826	34299605	0	1	779	0
chr21	34302378	34305451	B_Cells_Pritchard.3341755	0	.	34302378	34305451	0	1	3073	0
chr21	34303439	34304702	B_cells_Cheung.202772	0	.	34303439	34304702	0	1	1263	0
chr21	34303476	34304197	H1_polyA+.120118	0	.	34303476	34304197	0	1	721	0
chr21	34305665	34308482	B_Cells_Pritchard.3341757	0	-	34305665	34308482	0	2	1950,355	0,2462
chr21	34313053	34314652	H1_polyA+.120122	0	.	34313053	34314652	0	1	1599	0
chr21	34322987	34323425	B_cells_Cheung.202783	0	.	34322987	34323425	0	1	438	0
chr21	34326926	34327359	B_Cells_Pritchard.3341853	0	.	34326926	34327359	0	1	433	0
chr21	34330699	34331009	B_Cells_Pritchard.3341863	0	.	34330699	34331009	0	1	310	0
chr21	34438943	34439262	H1_rRNA-depleted_UCSD_REMC.90612	0	.	34438943	34439262	0	1	319	0
chr21	34441336	34444175	REMC_LuminalBreast.102381	0	.	34441336	34444175	0	1	2839	0
chr21	34442889	34445134	H1_polyA+.120158	0	.	34442889	34445134	0	1	2245	0
chr21	34443181	34444303	REMC_MyoepithelialBreast.95357	0	.	34443181	34444303	0	1	1122	0
chr21	34443443	34443936	B_cells_Cheung.202816	0	.	34443443	34443936	0	1	493	0
chr21	34445546	34448446	REMC_MyoepithelialBreast.95359	0	.	34445546	34448446	0	1	2900	0
chr21	34446559	34448047	B_cells_Cheung.202820	0	.	34446559	34448047	0	1	1488	0
chr21	34446570	34448168	REMC_BreastStem.51295	0	.	34446570	34448168	0	1	1598	0
chr21	34453062	34453809	B_cells_Cheung.202827	0	.	34453062	34453809	0	1	747	0
chr21	34463598	34465857	REMC_LuminalBreast.102336	0	.	34463598	34465857	0	1	2259	0
chr21	34473488	34474271	REMC_MyoepithelialBreast.95367	0	.	34473488	34474271	0	1	783	0
chr21	34474913	34482733	Rinn_00028838	0	+	34474913	34482733	0	2	51,347	0,7473
chr21	34476885	34484095	REMC_BreastStem.51297	0	+	34476885	34484095	0	3	404,446,1157	0,5502,6053
chr21	34477882	34479043	H1_polyA+.120170	0	.	34477882	34479043	0	1	1161	0
chr21	34478323	34478633	B_Cells_Pritchard.3342207	0	.	34478323	34478633	0	1	310	0
chr21	34481428	34486775	REMC_LuminalBreast.102341	0	.	34481428	34486775	0	1	5347	0
chr21	34484337	34486486	H1_polyA+.120173	0	.	34484337	34486486	0	1	2149	0
chr21	34484557	34489360	REMC_MyoepithelialBreast.95287	0	+	34484557	34489360	0	2	3062,624	0,4179
chr21	34484557	34487887	REMC_MyoepithelialBreast.95288	0	.	34484557	34487887	0	1	3330	0
chr21	34485464	34486458	MIP101.72213	0	.	34485464	34486458	0	1	994	0
chr21	34485788	34486510	B_cells_Cheung.202853	0	.	34485788	34486510	0	1	722	0
chr21	34485819	34486491	prostate_carcinoma.103834	0	.	34485819	34486491	0	1	672	0
chr21	34488062	34489233	H1_polyA+.120175	0	.	34488062	34489233	0	1	1171	0
chr21	34488734	34490234	MIP101.72215	0	.	34488734	34490234	0	1	1500	0
chr21	34495340	34496181	B_cells_Cheung.202861	0	.	34495340	34496181	0	1	841	0
chr21	34495346	34496082	H1_polyA+.120176	0	.	34495346	34496082	0	1	736	0
chr21	34495663	34496951	B_Cells_Pritchard.3342277	0	.	34495663	34496951	0	1	1288	0
chr21	34496628	34497070	B_cells_Cheung.202862	0	.	34496628	34497070	0	1	442	0
chr21	34497971	34498348	B_cells_Cheung.202863	0	.	34497971	34498348	0	1	377	0
chr21	34499296	34621504	REMC_MyoepithelialBreast.95289	0	+	34499296	34621504	0	5	199,41,102,76,2599	0,10374,57693,88554,119609
chr21	34509683	34557676	B_cells_Cheung.202864	0	+	34509683	34557676	0	2	28,687	0,47306
chr21	34521266	34521725	B_cells_Cheung.202868	0	.	34521266	34521725	0	1	459	0
chr21	34556786	34559165	MIP101.72216	0	.	34556786	34559165	0	1	2379	0
chr21	34556988	34558003	prostate_carcinoma.103835	0	.	34556988	34558003	0	1	1015	0
chr21	34558026	34558827	B_cells_Cheung.202873	0	.	34558026	34558827	0	1	801	0
chr21	34561682	34562510	MIP101.72219	0	.	34561682	34562510	0	1	828	0
chr21	34562143	34563003	B_Cells_Pritchard.3342547	0	.	34562143	34563003	0	1	860	0
chr21	34562312	34562886	B_cells_Cheung.202876	0	.	34562312	34562886	0	1	574	0
chr21	34562939	34564265	MIP101.72220	0	.	34562939	34564265	0	1	1326	0
chr21	34704611	34705036	B_Cells_Pritchard.3342923	0	.	34704611	34705036	0	1	425	0
chr21	34704730	34707545	REMC_LuminalBreast.102354	0	.	34704730	34707545	0	1	2815	0
chr21	34704836	34706217	prostate_carcinoma.103856	0	.	34704836	34706217	0	1	1381	0
chr21	34705006	34706130	MIP101.72229	0	.	34705006	34706130	0	1	1124	0
chr21	34735968	34737157	REMC_LuminalBreast.102358	0	.	34735968	34737157	0	1	1189	0
chr21	35036668	35038010	B_Cells_Pritchard.3343945	0	.	35036668	35038010	0	1	1342	0
chr21	35036813	35038081	T47D_Burge_Thompson.30564	0	.	35036813	35038081	0	1	1268	0
chr21	35037076	35037910	REMC_MyoepithelialBreast.95346	0	.	35037076	35037910	0	1	834	0
chr21	35037416	35038822	MCF7_Burge_Thompson.33654	0	.	35037416	35038822	0	1	1406	0
chr21	35038993	35040407	REMC_LuminalBreast.102402	0	.	35038993	35040407	0	1	1414	0
chr21	35043820	35047600	REMC_LuminalBreast.102404	0	.	35043820	35047600	0	1	3780	0
chr21	35054287	35056686	REMC_LuminalBreast.102407	0	.	35054287	35056686	0	1	2399	0
chr21	35054463	35055882	REMC_MyoepithelialBreast.95347	0	.	35054463	35055882	0	1	1419	0
chr21	35055478	35077397	pHIT000036307	0	-	35055478	35077397	0	3	215,49,111	0,20984,21808
chr21	35060597	35063771	REMC_LuminalBreast.102409	0	.	35060597	35063771	0	1	3174	0
chr21	35062693	35063765	REMC_MyoepithelialBreast.95349	0	.	35062693	35063765	0	1	1072	0
chr21	35064006	35067014	REMC_MyoepithelialBreast.95350	0	.	35064006	35067014	0	1	3008	0
chr21	35070154	35076374	HepG2_Caltech_ENCODE.40283	0	+	35070154	35076374	0	2	126,3165	0,3055
chr21	35072595	35074455	REMC_MyoepithelialBreast.95354	0	.	35072595	35074455	0	1	1860	0
chr21	35072595	35076268	REMC_LuminalBreast.102415	0	.	35072595	35076268	0	1	3673	0
chr21	35073731	35074199	CD4_Plagnol_resting.66050	0	.	35073731	35074199	0	1	468	0
chr21	35076455	35077685	prostate_carcinoma.103888	0	.	35076455	35077685	0	1	1230	0
chr21	35076456	35078570	REMC_LuminalBreast.102416	0	.	35076456	35078570	0	1	2114	0
chr21	35076662	35078700	HepG2_Caltech_ENCODE.40284	0	.	35076662	35078700	0	1	2038	0
chr21	35077245	35078742	REMC_MyoepithelialBreast.95741	0	.	35077245	35078742	0	1	1497	0
chr21	35077250	35078680	melanoma_Garraway_short_term_cultures.72335	0	.	35077250	35078680	0	1	1430	0
chr21	35077350	35078372	MIP101.72233	0	.	35077350	35078372	0	1	1022	0
chr21	35077379	35078565	H1_polyA+.120220	0	.	35077379	35078565	0	1	1186	0
chr21	36287861	36288613	B_Cells_Pritchard.3346885	0	.	36287861	36288613	0	1	752	0
chr21	36287870	36288560	BT474_Burge_Thompson.37610	0	.	36287870	36288560	0	1	690	0
chr21	36299259	36305825	REMC_LuminalBreast.102505	0	+	36299259	36305825	0	2	774,4339	0,2227
chr21	36305044	36305698	H1_polyA+.120239	0	.	36305044	36305698	0	1	654	0
chr21	36311808	36313443	REMC_LuminalBreast.102508	0	.	36311808	36313443	0	1	1635	0
chr21	36321010	36323936	HIT000081052	0	-	36321010	36323936	0	1	2926	0
chr21	36326415	36326767	B_Cells_Pritchard.3346995	0	.	36326415	36326767	0	1	352	0
chr21	36326956	36327478	B_Cells_Pritchard.3346999	0	.	36326956	36327478	0	1	522	0
chr21	36442032	36445106	REMC_MyoepithelialBreast.95391	0	.	36442032	36445106	0	1	3074	0
chr21	36442038	36450534	REMC_LuminalBreast.102536	0	.	36442038	36450534	0	1	8496	0
chr21	36444082	36445343	T47D_Burge_Thompson.30579	0	.	36444082	36445343	0	1	1261	0
chr21	36448263	36450483	REMC_MyoepithelialBreast.95393	0	.	36448263	36450483	0	1	2220	0
chr21	36449346	36450474	T47D_Burge_Thompson.30581	0	.	36449346	36450474	0	1	1128	0
chr21	36449436	36450511	MCF7_Burge_Thompson.33688	0	.	36449436	36450511	0	1	1075	0
chr21	36449779	36450592	BT474_Burge_Thompson.37687	0	.	36449779	36450592	0	1	813	0
chr21	36712419	36712786	HeLa_polyA+_Chen.37325	0	.	36712419	36712786	0	1	367	0
chr21	36712426	36712817	H9_polyA+.47531	0	.	36712426	36712817	0	1	391	0
chr21	36712438	36712802	HepG2_Caltech_ENCODE.40354	0	.	36712438	36712802	0	1	364	0
chr21	36712442	36712745	MeWo_Garraway.38266	0	.	36712442	36712745	0	1	303	0
chr21	36712444	36712779	MDAMB231_Thompson.23168	0	.	36712444	36712779	0	1	335	0
chr21	36712444	36712888	brain_AmbionMAQC.46938	0	.	36712444	36712888	0	1	444	0
chr21	36712444	36712770	BT474_Burge_Thompson.37639	0	.	36712444	36712770	0	1	326	0
chr21	36712446	36712987	BT20_Thompson.23139	0	.	36712446	36712987	0	1	541	0
chr21	36712449	36712846	ZR751_Thompson.25203	0	.	36712449	36712846	0	1	397	0
chr21	36712450	36712880	MDAMB468_Thompson.25637	0	.	36712450	36712880	0	1	430	0
chr21	36712450	36712753	T47D_Burge_Thompson.30596	0	.	36712450	36712753	0	1	303	0
chr21	36712455	36712774	melanoma_Garraway_short_term_cultures.72414	0	.	36712455	36712774	0	1	319	0
chr21	36712485	36712885	MCF7_Burge_Thompson.33703	0	.	36712485	36712885	0	1	400	0
chr21	36712868	36717959	REMC_LuminalBreast.102557	0	.	36712868	36717959	0	1	5091	0
chr21	36713396	36714474	B_cells_Cheung.203126	0	.	36713396	36714474	0	1	1078	0
chr21	36713571	36714520	BT474_Burge_Thompson.37640	0	.	36713571	36714520	0	1	949	0
chr21	36713955	36715585	B_Cells_Pritchard.3349749	0	-	36713955	36715585	0	1	1630	0
chr21	36714643	36715000	BT474_Burge_Thompson.37641	0	.	36714643	36715000	0	1	357	0
chr21	36716557	36716935	pHIT000036331	0	-	36716557	36716935	0	1	378	0
chr21	36716597	36717780	B_Cells_Pritchard.3349765	0	-	36716597	36717780	0	1	1183	0
chr21	36717244	36717811	BT474_Burge_Thompson.37642	0	.	36717244	36717811	0	1	567	0
chr21	36723959	36742400	B_Cells_Pritchard.3349813	0	+	36723959	36742400	0	4	621,52,1712,545	0,1118,15836,17896
chr21	36723959	36742400	B_Cells_Pritchard.3349811	0	-	36723959	36742400	0	2	1460,2637	0,15804
chr21	36725943	36728169	B_cells_Cheung.203136	0	.	36725943	36728169	0	1	2226	0
chr21	36726267	36728004	REMC_LuminalBreast.102561	0	.	36726267	36728004	0	1	1737	0
chr21	36726664	36727086	MIP101.72340	0	.	36726664	36727086	0	1	422	0
chr21	36729569	36730063	B_cells_Cheung.203138	0	.	36729569	36730063	0	1	494	0
chr21	36735379	36737181	REMC_LuminalBreast.102566	0	.	36735379	36737181	0	1	1802	0
chr21	36738957	36742210	REMC_LuminalBreast.102568	0	.	36738957	36742210	0	1	3253	0
chr21	36739819	36742103	REMC_BreastStem.51383	0	.	36739819	36742103	0	1	2284	0
chr21	36740831	36741188	BT474_Burge_Thompson.37632	0	.	36740831	36741188	0	1	357	0
chr21	36742636	36744504	REMC_LuminalBreast.102569	0	.	36742636	36744504	0	1	1868	0
chr21	36742736	36745094	B_cells_Cheung.203145	0	.	36742736	36745094	0	3	192,1516,529	0,250,1829
chr21	36743010	36743532	B_Cells_Pritchard.3347675	0	.	36743010	36743532	0	1	522	0
chr21	36743600	36744528	REMC_BreastStem.51384	0	.	36743600	36744528	0	1	928	0
chr21	36743770	36748629	B_Cells_Pritchard.3347679	0	+	36743770	36748629	0	3	727,408,680	0,3486,4179
chr21	36746416	36747560	B_cells_Cheung.203147	0	.	36746416	36747560	0	2	546,541	0,603
chr21	36746517	36748288	REMC_LuminalBreast.102570	0	.	36746517	36748288	0	1	1771	0
chr21	36747768	36752948	B_cells_Cheung.203148	0	.	36747768	36752948	0	1	5180	0
chr21	36748469	36751464	REMC_LuminalBreast.102571	0	.	36748469	36751464	0	1	2995	0
chr21	36750107	36751792	REMC_BreastStem.51387	0	.	36750107	36751792	0	1	1685	0
chr21	36906867	36983980	pHIT000121853	0	+	36906867	36983980	0	4	124,25,41,132	0,13917,15449,76981
chr21	36926847	36931201	Rinn_00028921	0	-	36926847	36931201	0	2	891,244	0,4110
chr21	36926848	36927746	BT474_Burge_Thompson.37645	0	.	36926848	36927746	0	1	898	0
chr21	36926848	36931201	ENST00000457669	0	-	36926848	36931201	0	2	890,243	0,4110
chr21	36926865	36935756	prostate_carcinoma.103976	0	-	36926865	36935756	0	3	1459,557,1810	0,4093,7081
chr21	36926887	36928323	prostate_normal.62158	0	.	36926887	36928323	0	1	1436	0
chr21	36928604	36929404	prostate_carcinoma.103981	0	.	36928604	36929404	0	1	800	0
chr21	36932896	36935781	BT474_Burge_Thompson.37647	0	.	36932896	36935781	0	1	2885	0
chr21	36932931	36951150	prostate_carcinoma.103975	0	+	36932931	36951150	0	2	2703,62	0,18157
chr21	36932931	36935756	prostate_carcinoma.103978	0	.	36932931	36935756	0	1	2825	0
chr21	36932958	36935739	prostate_normal.62161	0	.	36932958	36935739	0	1	2781	0
chr21	36935856	36937561	prostate_carcinoma.103982	0	.	36935856	36937561	0	1	1705	0
chr21	36935879	36937203	prostate_normal.62162	0	.	36935879	36937203	0	1	1324	0
chr21	36943688	36944336	prostate_carcinoma.103983	0	.	36943688	36944336	0	1	648	0
chr21	36946402	36947296	prostate_carcinoma.103993	0	.	36946402	36947296	0	1	894	0
chr21	36947866	36948681	prostate_normal.62164	0	.	36947866	36948681	0	1	815	0
chr21	36948431	36957214	prostate_carcinoma.103995	0	-	36948431	36957214	0	4	455,106,626,114	0,660,944,8669
chr21	36949020	36950288	prostate_normal.62165	0	-	36949020	36950288	0	2	177,913	0,355
chr21	36952992	36953462	prostate_normal.62167	0	.	36952992	36953462	0	1	470	0
chr21	36958823	36959287	prostate_carcinoma.103987	0	.	36958823	36959287	0	1	464	0
chr21	36960191	36981859	prostate_carcinoma.103988	0	-	36960191	36981859	0	2	2083,411	0,21257
chr21	36962551	36964482	prostate_carcinoma.104000	0	.	36962551	36964482	0	1	1931	0
chr21	36963716	36964433	prostate_normal.62170	0	.	36963716	36964433	0	1	717	0
chr21	36968672	36969310	prostate_carcinoma.104003	0	.	36968672	36969310	0	1	638	0
chr21	36985710	36987401	MIP101.72344	0	.	36985710	36987401	0	1	1691	0
chr21	36989491	36990120	BT474_Burge_Thompson.37653	0	.	36989491	36990120	0	1	629	0
chr21	36989503	36991580	MCF10A_Thompson.22413	0	.	36989503	36991580	0	1	2077	0
chr21	36989570	36990596	HeLa_polyA+_Chen.37329	0	.	36989570	36990596	0	1	1026	0
chr21	36990180	36991343	BT474_Burge_Thompson.37651	0	.	36990180	36991343	0	1	1163	0
chr21	36990805	36991427	HeLa_polyA+_Chen.37330	0	.	36990805	36991427	0	1	622	0
chr21	36990853	36991702	MDAMB468_Thompson.25648	0	.	36990853	36991702	0	1	849	0
chr21	36991636	36992016	A549_Myers.92032	0	.	36991636	36992016	0	1	380	0
chr21	37503195	37503931	REMC_BreastStem.51433	0	.	37503195	37503931	0	1	736	0
chr21	37503305	37504841	REMC_LuminalBreast.102703	0	.	37503305	37504841	0	1	1536	0
chr21	37506393	37507184	B_cells_Cheung.203449	0	.	37506393	37507184	0	1	791	0
chr21	37506728	37507355	REMC_LuminalBreast.102705	0	.	37506728	37507355	0	1	627	0
chr21	37651382	37652739	REMC_LuminalBreast.102730	0	.	37651382	37652739	0	1	1357	0
chr21	37657476	37660224	REMC_LuminalBreast.102731	0	.	37657476	37660224	0	1	2748	0
chr21	37657515	37658835	BT20_Thompson.23212	0	.	37657515	37658835	0	1	1320	0
chr21	37657636	37660422	REMC_MyoepithelialBreast.95544	0	.	37657636	37660422	0	1	2786	0
chr21	37658985	37660398	MIP101.72439	0	.	37658985	37660398	0	1	1413	0
chr21	37659315	37660448	prostate_carcinoma.104158	0	.	37659315	37660448	0	1	1133	0
chr21	37659672	37660425	brain_AmbionMAQC.46996	0	.	37659672	37660425	0	1	753	0
chr21	37659688	37660448	MCF7_Burge_Thompson.33758	0	.	37659688	37660448	0	1	760	0
chr21	37659718	37660431	T47D_Burge_Thompson.30677	0	.	37659718	37660431	0	1	713	0
chr21	37659807	37660496	A549_Myers.92109	0	.	37659807	37660496	0	1	689	0
chr21	37660124	37660468	MDAMB468_Thompson.25683	0	.	37660124	37660468	0	1	344	0
chr21	37660180	37660496	H1_polyA+.120377	0	.	37660180	37660496	0	1	316	0
chr21	37814030	37821992	REMC_LuminalBreast.102775	0	.	37814030	37821992	0	1	7962	0
chr21	37814174	37820777	REMC_MyoepithelialBreast.95554	0	.	37814174	37820777	0	1	6603	0
chr21	37814174	37816130	B_Cells_Pritchard.3350739	0	.	37814174	37816130	0	1	1956	0
chr21	37814259	37817244	H1_polyA+.120448	0	.	37814259	37817244	0	1	2985	0
chr21	37814695	37817878	B_cells_Cheung.203407	0	.	37814695	37817878	0	1	3183	0
chr21	37815066	37816573	REMC_BreastStem.51446	0	.	37815066	37816573	0	1	1507	0
chr21	37815567	37816787	prostate_carcinoma.104195	0	.	37815567	37816787	0	1	1220	0
chr21	37815839	37817439	melanoma_Garraway_short_term_cultures.72533	0	.	37815839	37817439	0	1	1600	0
chr21	37815981	37816524	BT474_Burge_Thompson.37714	0	.	37815981	37816524	0	1	543	0
chr21	37816339	37817570	B_Cells_Pritchard.3350741	0	.	37816339	37817570	0	1	1231	0
chr21	37817496	37818090	melanoma_Garraway_short_term_cultures.72534	0	.	37817496	37818090	0	1	594	0
chr21	37817508	37818147	H1_polyA+.120449	0	.	37817508	37818147	0	1	639	0
chr21	37822376	37888498	pHIT000095327	0	-	37822376	37888498	0	4	167,61,62,211	0,7513,47125,65911
chr21	37823711	37830745	REMC_LuminalBreast.102777	0	.	37823711	37830745	0	1	7034	0
chr21	37825200	37825793	melanoma_Garraway_short_term_cultures.72535	0	.	37825200	37825793	0	1	593	0
chr21	37825741	37826607	REMC_MyoepithelialBreast.95558	0	.	37825741	37826607	0	1	866	0
chr21	37827358	37827770	A549_Myers.92114	0	.	37827358	37827770	0	1	412	0
chr21	37832041	37839300	REMC_LuminalBreast.102779	0	.	37832041	37839300	0	1	7259	0
chr21	37840200	37843749	REMC_LuminalBreast.102780	0	.	37840200	37843749	0	1	3549	0
chr21	37840905	37842135	REMC_MyoepithelialBreast.95564	0	.	37840905	37842135	0	1	1230	0
chr21	37844086	37845955	REMC_LuminalBreast.102781	0	.	37844086	37845955	0	1	1869	0
chr21	37846496	37848426	REMC_LuminalBreast.102782	0	.	37846496	37848426	0	1	1930	0
chr21	37848708	37850471	REMC_LuminalBreast.102783	0	.	37848708	37850471	0	1	1763	0
chr21	37850529	37860543	REMC_LuminalBreast.102784	0	.	37850529	37860543	0	1	10014	0
chr21	37854161	37858055	BT474_Burge_Thompson.37719	0	.	37854161	37858055	0	1	3894	0
chr21	37854314	37858047	prostate_carcinoma.104196	0	.	37854314	37858047	0	1	3733	0
chr21	37854377	37859537	BT20_Thompson.23180	0	.	37854377	37859537	0	1	5160	0
chr21	37854428	37858840	B_cells_Cheung.203416	0	.	37854428	37858840	0	1	4412	0
chr21	37854502	37858609	B_Cells_Pritchard.3350877	0	-	37854502	37858609	0	1	4107	0
chr21	37855412	37858485	MCF7_Burge_Thompson.33760	0	.	37855412	37858485	0	1	3073	0
chr21	37855438	37858054	T47D_Burge_Thompson.30682	0	.	37855438	37858054	0	1	2616	0
chr21	37856252	37857947	REMC_MyoepithelialBreast.95571	0	.	37856252	37857947	0	1	1695	0
chr21	37856868	37857922	H1_polyA+.120452	0	.	37856868	37857922	0	1	1054	0
chr21	37857381	37858251	A549_Myers.92121	0	.	37857381	37858251	0	1	870	0
chr21	37869181	37875961	REMC_LuminalBreast.102790	0	.	37869181	37875961	0	1	6780	0
chr21	37876135	37878683	REMC_LuminalBreast.102791	0	.	37876135	37878683	0	1	2548	0
chr21	37876147	37876876	REMC_MyoepithelialBreast.95577	0	.	37876147	37876876	0	1	729	0
chr21	37876194	37876689	B_cells_Cheung.203421	0	.	37876194	37876689	0	1	495	0
chr21	37881434	37886486	H1_polyA+.120457	0	-	37881434	37886486	0	3	666,169,366	0,4391,4686
chr21	37881434	37882634	H1_polyA+.120454	0	.	37881434	37882634	0	1	1200	0
chr21	37902611	37903112	prostate_carcinoma.104197	0	.	37902611	37903112	0	1	501	0
chr21	37904808	37909414	H1_polyA+.120463	0	.	37904808	37909414	0	1	4606	0
chr21	37907921	37909829	brain_AmbionMAQC.47009	0	.	37907921	37909829	0	1	1908	0
chr21	37908505	37911121	prostate_normal.62243	0	+	37908505	37911121	0	2	474,103	0,2513
chr21	37909548	37911350	H1_polyA+.120464	0	.	37909548	37911350	0	1	1802	0
chr21	37909926	37911178	brain_AmbionMAQC.47008	0	.	37909926	37911178	0	1	1252	0
chr21	37916175	37917641	MCF10A_Thompson.22434	0	.	37916175	37917641	0	1	1466	0
chr21	38496752	38497442	B_Cells_Pritchard.3352457	0	.	38496752	38497442	0	1	690	0
chr21	38498089	38500044	HIT000094310	0	-	38498089	38500044	0	1	1955	0
chr21	38500119	38502608	ENST00000432141	0	+	38500119	38502608	0	3	205,145,510	0,316,1979
chr21	38500119	38502608	NR_027695	0	+	38500119	38502608	0	3	205,145,510	0,316,1979
chr21	38613945	38615262	REMC_MyoepithelialBreast.95583	0	.	38613945	38615262	0	1	1317	0
chr21	38617426	38627156	ENST00000414189	0	-	38617426	38627156	0	5	264,172,52,71,49	0,2148,8791,9327,9681
chr21	38617947	38619481	REMC_MyoepithelialBreast.95584	0	.	38617947	38619481	0	1	1534	0
chr21	38649131	38649445	A549_Myers.92131	0	.	38649131	38649445	0	1	314	0
chr21	38669883	38670943	prostate_carcinoma.104442	0	.	38669883	38670943	0	1	1060	0
chr21	38983543	39028145	pHIT000121878	0	+	38983543	39028145	0	2	46,311	0,44291
chr21	39032694	39046051	ENST00000426607	0	-	39032694	39046051	0	4	429,99,118,51	0,1415,7398,13306
chr21	39032747	39046051	Rinn_00028755	0	-	39032747	39046051	0	4	376,100,119,52	0,1361,7344,13252
chr21	39032748	39046051	NR_027067	0	-	39032748	39046051	0	4	375,99,118,51	0,1361,7344,13252
chr21	39043008	39046601	HIT000251030	0	-	39043008	39046601	0	1	3593	0
chr21	39044856	39047245	HIT000251031	0	-	39044856	39047245	0	1	2389	0
chr21	39152192	39152622	testes_Burge.55674	0	.	39152192	39152622	0	1	430	0
chr21	39165149	39165563	liver_polyA+.136672	0	.	39165149	39165563	0	1	414	0
chr21	39169847	39171876	MIP101.72477	0	.	39169847	39171876	0	1	2029	0
chr21	39169883	39172145	liver_polyA+.136674	0	.	39169883	39172145	0	1	2262	0
chr21	39173208	39173793	liver_polyA+.136678	0	.	39173208	39173793	0	1	585	0
chr21	39194763	39195283	liver_polyA+.136691	0	.	39194763	39195283	0	1	520	0
chr21	39202433	39211494	MIP101.72480	0	.	39202433	39211494	0	2	8121,793	0,8268
chr21	39205591	39208306	liver_polyA+.136697	0	-	39205591	39208306	0	2	2078,103	0,2612
chr21	39206714	39207408	prostate_normal.62307	0	.	39206714	39207408	0	1	694	0
chr21	39207039	39208202	REMC_LuminalBreast.102805	0	.	39207039	39208202	0	1	1163	0
chr21	39207078	39208470	prostate_carcinoma.104254	0	.	39207078	39208470	0	1	1392	0
chr21	39207241	39207662	A549_Myers.92147	0	.	39207241	39207662	0	1	421	0
chr21	39207276	39207942	HeLa_polyA+_Chen.37408	0	.	39207276	39207942	0	1	666	0
chr21	39207385	39208264	REMC_MyoepithelialBreast.95651	0	.	39207385	39208264	0	1	879	0
chr21	39207772	39208370	prostate_normal.62308	0	.	39207772	39208370	0	1	598	0
chr21	39207981	39208306	liver_polyA+.136698	0	.	39207981	39208306	0	1	325	0
chr21	39214313	39217576	MIP101.72482	0	-	39214313	39217576	0	2	2105,337	0,2926
chr21	39214313	39216537	MIP101.72481	0	.	39214313	39216537	0	1	2224	0
chr21	39282362	39317854	REMC_MyoepithelialBreast.95653	0	-	39282362	39317854	0	6	860,198,1125,1485,7165,201	0,2260,17093,22521,26860,35291
chr21	39287325	39288877	HepG2_Caltech_ENCODE.40426	0	.	39287325	39288877	0	1	1552	0
chr21	39289782	39290855	REMC_MyoepithelialBreast.95654	0	.	39289782	39290855	0	1	1073	0
chr21	39291776	39307560	HepG2_Caltech_ENCODE.40428	0	+	39291776	39307560	0	2	379,1567	0,14217
chr21	39291786	39296093	REMC_MyoepithelialBreast.95655	0	.	39291786	39296093	0	1	4307	0
chr21	39293048	39306030	HepG2_Caltech_ENCODE.40429	0	-	39293048	39306030	0	3	2471,1402,1147	0,6130,11835
chr21	39293142	39316549	MIP101.72486	0	-	39293142	39316549	0	8	1537,779,1125,439,248,68,1293,1484	0,1598,6313,11741,16037,19844,20472,21923
chr21	39293418	39295123	prostate_carcinoma.104258	0	.	39293418	39295123	0	1	1705	0
chr21	39293495	39293848	liver_polyA+.136706	0	.	39293495	39293848	0	1	353	0
chr21	39294667	39295467	lymph_node_Burge.52540	0	.	39294667	39295467	0	1	800	0
chr21	39294717	39295448	prostate_normal.62313	0	.	39294717	39295448	0	1	731	0
chr21	39294734	39295170	B_Cells_Pritchard.3354463	0	.	39294734	39295170	0	1	436	0
chr21	39294787	39295093	HME_Burge.42746	0	.	39294787	39295093	0	1	306	0
chr21	39299101	39300659	prostate_carcinoma.104265	0	.	39299101	39300659	0	1	1558	0
chr21	39299407	39300639	prostate_normal.62314	0	.	39299407	39300639	0	1	1232	0
chr21	39299624	39300520	REMC_LuminalBreast.102807	0	.	39299624	39300520	0	1	896	0
chr21	39299750	39300485	brain_AmbionMAQC.47028	0	.	39299750	39300485	0	1	735	0
chr21	39299767	39305214	H1_polyA+.120484	0	-	39299767	39305214	0	2	813,331	0,5116
chr21	39303132	39318786	MIP101.72485	0	+	39303132	39318786	0	2	4276,5533	0,10121
chr21	39304879	39305471	prostate_normal.62315	0	.	39304879	39305471	0	1	592	0
chr21	39304883	39307559	prostate_carcinoma.104266	0	.	39304883	39307559	0	1	2676	0
chr21	39304909	39305233	lymph_node_Burge.52544	0	.	39304909	39305233	0	1	324	0
chr21	39305001	39308748	Rinn_00029017	0	+	39305001	39308748	0	2	117,332	0,3415
chr21	39305527	39306202	brain_AmbionMAQC.47027	0	.	39305527	39306202	0	1	675	0
chr21	39306275	39307378	prostate_normal.62316	0	.	39306275	39307378	0	1	1103	0
chr21	39306303	39307510	H1_polyA+.120485	0	.	39306303	39307510	0	1	1207	0
chr21	39306390	39307240	brain_AmbionMAQC.47029	0	.	39306390	39307240	0	1	850	0
chr21	39306430	39306955	B_Cells_Pritchard.3354505	0	.	39306430	39306955	0	1	525	0
chr21	39306710	39307328	liver_polyA+.136715	0	.	39306710	39307328	0	1	618	0
chr21	39306710	39326373	liver_polyA+.136714	0	+	39306710	39326373	0	2	533,45	0,19618
chr21	39312457	39315828	H1_polyA+.120487	0	.	39312457	39315828	0	1	3371	0
chr21	39314342	39316418	HepG2_Caltech_ENCODE.40435	0	.	39314342	39316418	0	1	2076	0
chr21	39315058	39315523	B_Cells_Pritchard.3354541	0	.	39315058	39315523	0	1	465	0
chr21	39315676	39316036	lymph_node_Burge.52553	0	.	39315676	39316036	0	1	360	0
chr21	39316795	39317714	HIT000244509	0	-	39316795	39317714	0	1	919	0
chr21	39324424	39324821	prostate_carcinoma.104269	0	.	39324424	39324821	0	1	397	0
chr21	39329883	39331079	REMC_MyoepithelialBreast.95659	0	.	39329883	39331079	0	1	1196	0
chr21	39620958	39621733	REMC_BreastStem.51477	0	.	39620958	39621733	0	1	775	0
chr21	39625538	39627275	REMC_MyoepithelialBreast.95710	0	.	39625538	39627275	0	1	1737	0
chr21	39630319	39630819	B_Cells_Pritchard.3363797	0	+	39630319	39630819	0	1	500	0
chr21	39829907	39833623	H1_polyA+.120557	0	.	39829907	39833623	0	1	3716	0
chr21	39834316	39835481	H1_polyA+.120558	0	.	39834316	39835481	0	1	1165	0
chr21	39835800	39839049	H1_polyA+.120559	0	.	39835800	39839049	0	1	3249	0
chr21	39839322	39842896	H1_polyA+.120560	0	.	39839322	39842896	0	1	3574	0
chr21	39845161	39848626	H1_polyA+.120562	0	.	39845161	39848626	0	1	3465	0
chr21	39957967	39959398	MCF7_Burge_Thompson.33786	0	.	39957967	39959398	0	1	1431	0
chr21	39958104	39958672	H1_rRNA-depleted_UCSD_REMC.90944	0	.	39958104	39958672	0	1	568	0
chr21	39958778	39959102	H1_rRNA-depleted_UCSD_REMC.90945	0	.	39958778	39959102	0	1	324	0
chr21	39969758	39970617	REMC_LuminalBreast.102884	0	.	39969758	39970617	0	1	859	0
chr21	39973789	39974687	H1_polyA+.120829	0	.	39973789	39974687	0	1	898	0
chr21	39985732	39988002	H1_polyA+.120836	0	.	39985732	39988002	0	1	2270	0
chr21	39999689	40000707	H1_polyA+.120843	0	.	39999689	40000707	0	1	1018	0
chr21	40004792	40005472	H1_polyA+.120847	0	.	40004792	40005472	0	1	680	0
chr21	40020911	40021791	H9_polyA+.47627	0	.	40020911	40021791	0	1	880	0
chr21	40020927	40024755	REMC_LuminalBreast.102885	0	+	40020927	40024755	0	2	862,1826	0,2002
chr21	40021550	40024477	Rinn_00028774	0	+	40021550	40024477	0	3	239,128,1178	0,1378,1749
chr21	40021551	40024477	ENST00000457325	0	+	40021551	40024477	0	3	238,127,1177	0,1378,1749
chr21	40021551	40024477	HIT000303682	0	+	40021551	40024477	0	3	238,127,1177	0,1378,1749
chr21	40025490	40026361	REMC_LuminalBreast.102886	0	.	40025490	40026361	0	1	871	0
chr21	40301811	40303347	REMC_MyoepithelialBreast.95739	0	.	40301811	40303347	0	1	1536	0
chr21	41174938	41175353	B_Cells_Pritchard.3358699	0	.	41174938	41175353	0	1	415	0
chr21	41204119	41231052	pHIT000121902	0	-	41204119	41231052	0	3	100,166,70	0,15216,26863
chr21	41286775	41287768	prostate_carcinoma.104364	0	.	41286775	41287768	0	1	993	0
chr21	41306128	41306994	BT474_Burge_Thompson.37769	0	.	41306128	41306994	0	1	866	0
chr21	41306549	41307015	B_Cells_Pritchard.3359015	0	.	41306549	41307015	0	1	466	0
chr21	41362546	41363145	B_Cells_Pritchard.3359183	0	.	41362546	41363145	0	1	599	0
chr21	41366528	41446826	pHIT000121904	0	+	41366528	41446826	0	5	82,94,160,222,147	0,2094,51962,69964,80151
chr21	41401281	41401741	B_Cells_Pritchard.3359315	0	.	41401281	41401741	0	1	460	0
chr21	41435296	41441861	NR_024100	0	-	41435296	41441861	0	2	1916,103	0,6462
chr21	41435296	41441930	ENST00000441268	0	-	41435296	41441930	0	2	1916,172	0,6462
chr21	41435297	41440151	prostate_carcinoma.104366	0	.	41435297	41440151	0	1	4854	0
chr21	41435681	41436756	prostate_normal.62387	0	.	41435681	41436756	0	1	1075	0
chr21	41435688	41437310	MDAMB468_Thompson.25810	0	.	41435688	41437310	0	1	1622	0
chr21	41435816	41436642	brain_AmbionMAQC.47083	0	.	41435816	41436642	0	1	826	0
chr21	41436327	41438583	REMC_LuminalBreast.102890	0	.	41436327	41438583	0	1	2256	0
chr21	41436895	41445840	REMC_BreastStem.51503	0	-	41436895	41445840	0	3	317,165,914	0,4863,8031
chr21	41436973	41445216	prostate_normal.62405	0	+	41436973	41445216	0	2	2285,4348	0,3895
chr21	41436976	41441230	ENST00000446910	0	-	41436976	41441230	0	3	236,259,85	0,1897,4169
chr21	41440521	41445890	prostate_carcinoma.104367	0	-	41440521	41445890	0	2	775,4132	0,1237
chr21	41440561	41445216	prostate_normal.62404	0	.	41440561	41445216	0	1	4655	0
chr21	41441272	41446760	REMC_LuminalBreast.102891	0	-	41441272	41446760	0	2	4566,166	0,5322
chr21	41441782	41443078	melanoma_Garraway_short_term_cultures.72592	0	.	41441782	41443078	0	1	1296	0
chr21	41443186	41445802	melanoma_Garraway_short_term_cultures.72593	0	.	41443186	41445802	0	1	2616	0
chr21	41443875	41445677	MeWo_Garraway.39328	0	.	41443875	41445677	0	1	1802	0
chr21	41444072	41444699	HeLa_polyA+_Chen.37464	0	.	41444072	41444699	0	1	627	0
chr21	41444125	41444692	kidney_Raymond.104081	0	.	41444125	41444692	0	1	567	0
chr21	41444712	41445840	REMC_BreastStem.51504	0	.	41444712	41445840	0	1	1128	0
chr21	41445208	41446695	MDAMB468_Thompson.25811	0	-	41445208	41446695	0	2	630,101	0,1386
chr21	41446918	41450252	REMC_LuminalBreast.102892	0	.	41446918	41450252	0	1	3334	0
chr21	41447535	41448525	prostate_carcinoma.104368	0	.	41447535	41448525	0	1	990	0
chr21	41454365	41456378	REMC_LuminalBreast.102894	0	.	41454365	41456378	0	1	2013	0
chr21	41573483	41573835	HeLa_Bartel_WT_12hr.33726	0	.	41573483	41573835	0	1	352	0
chr21	41573577	41574213	testes_Burge.55723	0	.	41573577	41574213	0	1	636	0
chr21	41574674	41575021	lymph_node_Burge.52588	0	.	41574674	41575021	0	1	347	0
chr21	41574717	41575019	HeLa_Bartel_miR-155_12hr.33918	0	.	41574717	41575019	0	1	302	0
chr21	41753561	41756658	B_Cells_Pritchard.3370651	0	-	41753561	41756658	0	1	3097	0
chr21	41829989	41830973	prostate_carcinoma.104487	0	.	41829989	41830973	0	1	984	0
chr21	41831064	41832900	prostate_carcinoma.104488	0	.	41831064	41832900	0	1	1836	0
chr21	41850237	41852242	prostate_carcinoma.104494	0	.	41850237	41852242	0	1	2005	0
chr21	41858680	41859163	prostate_carcinoma.104496	0	.	41858680	41859163	0	1	483	0
chr21	41869604	41877429	prostate_carcinoma.104492	0	.	41869604	41877429	0	1	7825	0
chr21	41870776	41874769	prostate_normal.62446	0	.	41870776	41874769	0	1	3993	0
chr21	41874911	41877429	prostate_normal.62447	0	.	41874911	41877429	0	1	2518	0
chr21	41875084	41877429	prostate_carcinoma.104490	0	+	41875084	41877429	0	2	179,2081	0,264
chr21	41875227	41876495	Rinn_00029024	0	+	41875227	41876495	0	2	36,1148	0,120
chr21	41889285	41890073	prostate_carcinoma.104504	0	.	41889285	41890073	0	1	788	0
chr21	41896676	41897099	B_Cells_Pritchard.3360395	0	.	41896676	41897099	0	1	423	0
chr21	41904582	41905889	prostate_carcinoma.104511	0	.	41904582	41905889	0	1	1307	0
chr21	41904829	41905514	prostate_normal.62451	0	.	41904829	41905514	0	1	685	0
chr21	41906155	41908138	MCF10A_Thompson.22476	0	.	41906155	41908138	0	1	1983	0
chr21	41906169	41908109	prostate_carcinoma.104507	0	.	41906169	41908109	0	1	1940	0
chr21	41906274	41907115	BT20_Thompson.23229	0	.	41906274	41907115	0	1	841	0
chr21	41906313	41906917	MDAMB468_Thompson.25712	0	.	41906313	41906917	0	1	604	0
chr21	41908611	41910243	MDAMB468_Thompson.25713	0	.	41908611	41910243	0	1	1632	0
chr21	41913719	41914134	A549_Myers.92226	0	.	41913719	41914134	0	1	415	0
chr21	41925226	41925739	A549_Myers.92228	0	.	41925226	41925739	0	1	513	0
chr21	41934322	41936341	B_cells_Cheung.203580	0	.	41934322	41936341	0	1	2019	0
chr21	41957073	41961060	B_cells_Cheung.203589	0	.	41957073	41961060	0	1	3987	0
chr21	41957141	41958114	prostate_carcinoma.104512	0	.	41957141	41958114	0	1	973	0
chr21	41961754	41963875	B_cells_Cheung.203591	0	+	41961754	41963875	0	2	757,358	0,1763
chr21	41962631	41963141	B_cells_Cheung.203593	0	.	41962631	41963141	0	1	510	0
chr21	41963242	41963875	B_cells_Cheung.203592	0	.	41963242	41963875	0	1	633	0
chr21	41963437	41964168	B_Cells_Pritchard.3360659	0	.	41963437	41964168	0	1	731	0
chr21	41964484	41967998	B_cells_Cheung.203594	0	.	41964484	41967998	0	1	3514	0
chr21	41965266	41966166	prostate_carcinoma.104513	0	.	41965266	41966166	0	1	900	0
chr21	41965319	41966062	REMC_BreastStem.51520	0	.	41965319	41966062	0	1	743	0
chr21	41965638	41966399	MDAMB468_Thompson.25714	0	.	41965638	41966399	0	1	761	0
chr21	41965661	41967223	B_Cells_Pritchard.3360669	0	.	41965661	41967223	0	1	1562	0
chr21	41965717	41966038	melanoma_Garraway_short_term_cultures.72674	0	.	41965717	41966038	0	1	321	0
chr21	41966763	41967843	MDAMB468_Thompson.25715	0	.	41966763	41967843	0	1	1080	0
chr21	41970864	41971726	prostate_carcinoma.104515	0	.	41970864	41971726	0	1	862	0
chr21	41971327	42010631	pHIT000036369	0	+	41971327	42010631	0	5	117,176,125,349,61	0,3919,4150,11081,39243
chr21	41971327	41984721	pHIT000121916	0	+	41971327	41984721	0	5	117,176,125,321,101	0,3919,4150,11081,13293
chr21	41971787	41972095	A549_Myers.92231	0	.	41971787	41972095	0	1	308	0
chr21	41972941	41975798	HIT000020104	0	+	41972941	41975798	0	1	2857	0
chr21	41973837	41975092	REMC_LuminalBreast.102956	0	.	41973837	41975092	0	1	1255	0
chr21	41992481	41992815	A549_Myers.92232	0	.	41992481	41992815	0	1	334	0
chr21	41993355	41994313	HepG2_Caltech_ENCODE.40481	0	.	41993355	41994313	0	1	958	0
chr21	41994018	41997341	melanoma_Garraway_short_term_cultures.72678	0	.	41994018	41997341	0	1	3323	0
chr21	41994089	41994507	MeWo_Garraway.38389	0	.	41994089	41994507	0	1	418	0
chr21	41997437	41999847	MeWo_Garraway.38391	0	.	41997437	41999847	0	1	2410	0
chr21	41997653	41998215	HepG2_Caltech_ENCODE.40484	0	.	41997653	41998215	0	1	562	0
chr21	41997673	42001553	melanoma_Garraway_short_term_cultures.72679	0	.	41997673	42001553	0	1	3880	0
chr21	42000779	42001375	MeWo_Garraway.38392	0	.	42000779	42001375	0	1	596	0
chr21	42002207	42004485	melanoma_Garraway_short_term_cultures.72680	0	.	42002207	42004485	0	1	2278	0
chr21	42004700	42008482	HepG2_Caltech_ENCODE.40480	0	-	42004700	42008482	0	3	1529,1049,134	0,2079,3648
chr21	42004743	42007346	prostate_carcinoma.104518	0	-	42004743	42007346	0	2	1486,567	0,2036
chr21	42004748	42009004	NR_027272	0	-	42004748	42009004	0	6	1481,122,113,119,164,34	0,2031,2500,2714,3600,4222
chr21	42004748	42009004	ENST00000412102	0	-	42004748	42009004	0	6	1481,122,113,119,164,34	0,2031,2500,2714,3600,4222
chr21	42004917	42005757	H1_polyA+.120717	0	.	42004917	42005757	0	1	840	0
chr21	42006084	42008524	HIT000389725	0	-	42006084	42008524	0	6	145,122,81,113,81,176	0,695,1000,1164,1378,2264
chr21	42006397	42007973	REMC_LuminalBreast.102999	0	.	42006397	42007973	0	1	1576	0
chr21	42007389	42007795	A549_Myers.92233	0	.	42007389	42007795	0	1	406	0
chr21	42007427	42007785	prostate_normal.62454	0	.	42007427	42007785	0	1	358	0
chr21	42008039	42009791	REMC_LuminalBreast.103000	0	.	42008039	42009791	0	1	1752	0
chr21	42008132	42008640	MeI_Garraway.18511	0	.	42008132	42008640	0	1	508	0
chr21	42008204	42009265	REMC_MyoepithelialBreast.97866	0	.	42008204	42009265	0	1	1061	0
chr21	42008449	42009823	prostate_carcinoma.104520	0	.	42008449	42009823	0	1	1374	0
chr21	42008838	42010076	MeI_Garraway.18512	0	.	42008838	42010076	0	1	1238	0
chr21	42009069	42011088	Rinn_00029026	0	+	42009069	42011088	0	3	20,171,835	0,533,1184
chr21	42009218	42010038	MIP101.72586	0	.	42009218	42010038	0	1	820	0
chr21	42009371	42009966	REMC_MyoepithelialBreast.97867	0	.	42009371	42009966	0	1	595	0
chr21	42009585	42011112	Rinn_00029223	0	+	42009585	42011112	0	2	188,884	0,643
chr21	42013370	42014719	REMC_MyoepithelialBreast.97868	0	.	42013370	42014719	0	1	1349	0
chr21	42017287	42018205	REMC_MyoepithelialBreast.97869	0	.	42017287	42018205	0	1	918	0
chr21	42018587	42019537	MIP101.72587	0	.	42018587	42019537	0	1	950	0
chr21	42019064	42022027	REMC_LuminalBreast.103002	0	.	42019064	42022027	0	1	2963	0
chr21	42019254	42020545	REMC_MyoepithelialBreast.97870	0	.	42019254	42020545	0	1	1291	0
chr21	42026361	42027019	prostate_carcinoma.104522	0	.	42026361	42027019	0	1	658	0
chr21	42027691	42029282	REMC_LuminalBreast.103003	0	.	42027691	42029282	0	1	1591	0
chr21	42028243	42029275	REMC_MyoepithelialBreast.97871	0	.	42028243	42029275	0	1	1032	0
chr21	42029415	42031030	REMC_MyoepithelialBreast.97872	0	.	42029415	42031030	0	1	1615	0
chr21	42070251	42072267	REMC_LuminalBreast.102968	0	.	42070251	42072267	0	1	2016	0
chr21	42070495	42072124	HepG2_Caltech_ENCODE.40490	0	.	42070495	42072124	0	1	1629	0
chr21	42071111	42071454	B_cells_Cheung.203602	0	.	42071111	42071454	0	1	343	0
chr21	42077975	42079826	REMC_LuminalBreast.102971	0	.	42077975	42079826	0	1	1851	0
chr21	42079429	42080197	REMC_MyoepithelialBreast.96033	0	.	42079429	42080197	0	1	768	0
chr21	42084071	42090736	B_Cells_Pritchard.3360961	0	+	42084071	42090736	0	3	201,1592,1242	0,3348,5423
chr21	42086622	42087891	REMC_LuminalBreast.102974	0	.	42086622	42087891	0	1	1269	0
chr21	42086660	42087789	MIP101.72597	0	.	42086660	42087789	0	1	1129	0
chr21	42086676	42087934	B_cells_Cheung.203607	0	.	42086676	42087934	0	1	1258	0
chr21	42248269	42248639	breast_Burge.42519	0	.	42248269	42248639	0	1	370	0
chr21	42251448	42252466	BT20_Thompson.23258	0	.	42251448	42252466	0	1	1018	0
chr21	42256837	42257399	H1_polyA+.120726	0	.	42256837	42257399	0	1	562	0
chr21	42263090	42264931	REMC_BreastStem.51527	0	.	42263090	42264931	0	1	1841	0
chr21	42263166	42264832	REMC_LuminalBreast.102990	0	.	42263166	42264832	0	1	1666	0
chr21	42263710	42264077	B_cells_Cheung.203655	0	.	42263710	42264077	0	1	367	0
chr21	42263748	42264726	B_Cells_Pritchard.3361181	0	.	42263748	42264726	0	1	978	0
chr21	42263879	42264898	REMC_MyoepithelialBreast.96045	0	.	42263879	42264898	0	1	1019	0
chr21	42265079	42269559	REMC_MyoepithelialBreast.96046	0	.	42265079	42269559	0	1	4480	0
chr21	42265704	42266815	HepG2_Caltech_ENCODE.40500	0	.	42265704	42266815	0	1	1111	0
chr21	42265751	42267864	REMC_BreastStem.51528	0	.	42265751	42267864	0	1	2113	0
chr21	42265786	42267433	B_cells_Cheung.203656	0	.	42265786	42267433	0	1	1647	0
chr21	42265905	42269377	B_Cells_Pritchard.3361185	0	+	42265905	42269377	0	1	3472	0
chr21	42266612	42268063	REMC_LuminalBreast.102991	0	.	42266612	42268063	0	1	1451	0
chr21	42267501	42268423	B_cells_Cheung.203657	0	.	42267501	42268423	0	1	922	0
chr21	42269774	42271914	REMC_MyoepithelialBreast.96047	0	.	42269774	42271914	0	1	2140	0
chr21	42270251	42271740	REMC_BreastStem.51530	0	.	42270251	42271740	0	1	1489	0
chr21	42274227	42276970	REMC_LuminalBreast.102994	0	.	42274227	42276970	0	1	2743	0
chr21	42304995	42310065	melanoma_Garraway_short_term_cultures.72711	0	.	42304995	42310065	0	1	5070	0
chr21	42305000	42307119	REMC_BreastStem.51741	0	.	42305000	42307119	0	1	2119	0
chr21	42306552	42307669	MIP101.72620	0	.	42306552	42307669	0	1	1117	0
chr21	42309075	42309867	MIP101.72621	0	.	42309075	42309867	0	1	792	0
chr21	42310850	42314512	B_Cells_Pritchard.3361267	0	.	42310850	42314512	0	1	3662	0
chr21	42311646	42314527	B_cells_Cheung.203667	0	.	42311646	42314527	0	1	2881	0
chr21	42313357	42313996	REMC_BreastStem.51743	0	.	42313357	42313996	0	1	639	0
chr21	42313442	42314382	melanoma_Garraway_short_term_cultures.72712	0	.	42313442	42314382	0	1	940	0
chr21	42314679	42315136	B_Cells_Pritchard.3361269	0	.	42314679	42315136	0	1	457	0
chr21	42314863	42315440	REMC_BreastStem.51744	0	.	42314863	42315440	0	1	577	0
chr21	42315119	42316351	REMC_LuminalBreast.103046	0	.	42315119	42316351	0	1	1232	0
chr21	42315181	42318129	NR_027273	0	+	42315181	42318129	0	2	427,646	0,2302
chr21	42315200	42318044	ENST00000455701	0	+	42315200	42318044	0	2	189,561	0,2283
chr21	42315259	42318129	HIT000011781	0	+	42315259	42318129	0	1	2870	0
chr21	42315261	42315597	B_Cells_Pritchard.3361271	0	.	42315261	42315597	0	1	336	0
chr21	42315444	42318102	ENST00000429739	0	+	42315444	42318102	0	2	164,619	0,2039
chr21	42315446	42318115	HIT000040836	0	+	42315446	42318115	0	2	162,632	0,2037
chr21	42315572	42316179	REMC_BreastStem.51745	0	.	42315572	42316179	0	1	607	0
chr21	42316415	42318086	REMC_LuminalBreast.103047	0	.	42316415	42318086	0	1	1671	0
chr21	42316948	42318110	REMC_MyoepithelialBreast.96225	0	.	42316948	42318110	0	1	1162	0
chr21	42317233	42318126	CD4_Plagnol_activated.68486	0	.	42317233	42318126	0	1	893	0
chr21	42317269	42318111	B_Cells_Pritchard.3361285	0	.	42317269	42318111	0	1	842	0
chr21	42317372	42318111	B_cells_Cheung.203668	0	.	42317372	42318111	0	1	739	0
chr21	42317423	42318378	testes_Burge.55777	0	.	42317423	42318378	0	1	955	0
chr21	42317456	42318017	prostate_normal.62485	0	.	42317456	42318017	0	1	561	0
chr21	42317479	42318831	REMC_BreastStem.51755	0	.	42317479	42318831	0	1	1352	0
chr21	42320591	42321657	REMC_LuminalBreast.103049	0	.	42320591	42321657	0	1	1066	0
chr21	42330964	42338337	REMC_MyoepithelialBreast.96228	0	+	42330964	42338337	0	2	4196,1103	0,6270
chr21	42331135	42332063	REMC_LuminalBreast.103051	0	.	42331135	42332063	0	1	928	0
chr21	42332192	42333084	REMC_LuminalBreast.103052	0	.	42332192	42333084	0	1	892	0
chr21	42333380	42339214	REMC_LuminalBreast.103053	0	+	42333380	42339214	0	2	1780,1980	0,3854
chr21	42333380	42335606	REMC_LuminalBreast.103054	0	.	42333380	42335606	0	1	2226	0
chr21	42333689	42336797	REMC_MyoepithelialBreast.96229	0	.	42333689	42336797	0	1	3108	0
chr21	42334147	42334548	IMR90_UCSD_REMC.51584	0	-	42334147	42334548	0	1	401	0
chr21	42336432	42337217	REMC_LuminalBreast.103055	0	.	42336432	42337217	0	1	785	0
chr21	42343146	42346155	REMC_MyoepithelialBreast.96230	0	.	42343146	42346155	0	1	3009	0
chr21	42343411	42343905	REMC_LuminalBreast.103057	0	.	42343411	42343905	0	1	494	0
chr21	42344300	42350495	REMC_LuminalBreast.103058	0	.	42344300	42350495	0	1	6195	0
chr21	42344685	42345551	prostate_carcinoma.104567	0	.	42344685	42345551	0	1	866	0
chr21	42344741	42345282	prostate_normal.62486	0	.	42344741	42345282	0	1	541	0
chr21	42344933	42346407	REMC_BreastStem.51756	0	.	42344933	42346407	0	1	1474	0
chr21	42347070	42348307	REMC_BreastStem.51759	0	.	42347070	42348307	0	1	1237	0
chr21	42347074	42348893	REMC_MyoepithelialBreast.96231	0	.	42347074	42348893	0	1	1819	0
chr21	42347172	42348078	melanoma_Garraway_short_term_cultures.72713	0	.	42347172	42348078	0	1	906	0
chr21	42347625	42348959	prostate_carcinoma.104570	0	.	42347625	42348959	0	1	1334	0
chr21	42347727	42348298	B_Cells_Pritchard.3361367	0	.	42347727	42348298	0	1	571	0
chr21	42350412	42351558	prostate_carcinoma.104572	0	.	42350412	42351558	0	1	1146	0
chr21	42350618	42351591	prostate_normal.62489	0	.	42350618	42351591	0	1	973	0
chr21	42350659	42352211	BT474_Burge_Thompson.37795	0	.	42350659	42352211	0	1	1552	0
chr21	42350686	42352651	REMC_MyoepithelialBreast.96233	0	.	42350686	42352651	0	1	1965	0
chr21	42351656	42352730	prostate_normal.62490	0	.	42351656	42352730	0	1	1074	0
chr21	42351699	42353465	prostate_carcinoma.104573	0	.	42351699	42353465	0	1	1766	0
chr21	42352139	42352534	A549_Myers.92293	0	.	42352139	42352534	0	1	395	0
chr21	42464183	42465091	B_cells_Cheung.203693	0	.	42464183	42465091	0	1	908	0
chr21	42465622	42466822	B_cells_Cheung.203694	0	.	42465622	42466822	0	1	1200	0
chr21	42476518	42477600	B_Cells_Pritchard.3361837	0	+	42476518	42477600	0	2	416,576	0,506
chr21	42476702	42477503	BT474_Burge_Thompson.37804	0	.	42476702	42477503	0	1	801	0
chr21	42593975	42597512	brain_AmbionMAQC.47113	0	.	42593975	42597512	0	1	3537	0
chr21	42593977	42597508	MCF10A_Thompson.22495	0	.	42593977	42597508	0	1	3531	0
chr21	42594000	42597656	CD4_Plagnol_resting.66446	0	.	42594000	42597656	0	1	3656	0
chr21	42594024	42597541	CD4_Plagnol_activated.68479	0	.	42594024	42597541	0	1	3517	0
chr21	42594053	42597508	BT474_Burge_Thompson.37805	0	.	42594053	42597508	0	1	3455	0
chr21	42594100	42595219	adipose_Burge.40681	0	.	42594100	42595219	0	1	1119	0
chr21	42594416	42595040	colon_Burge.39828	0	.	42594416	42595040	0	1	624	0
chr21	42594434	42595121	MDAMB231_Thompson.23260	0	.	42594434	42595121	0	1	687	0
chr21	42594603	42595188	T47D_Burge_Thompson.30766	0	.	42594603	42595188	0	1	585	0
chr21	42594812	42596059	H1_polyA+.120739	0	.	42594812	42596059	0	1	1247	0
chr21	42612478	42613731	MIP101.72623	0	.	42612478	42613731	0	1	1253	0
chr21	42612508	42613300	prostate_carcinoma.104595	0	.	42612508	42613300	0	1	792	0
chr21	42617791	42619087	REMC_MyoepithelialBreast.96072	0	.	42617791	42619087	0	1	1296	0
chr21	42662422	42663081	HepG2_Caltech_ENCODE.40505	0	.	42662422	42663081	0	1	659	0
chr21	42742031	42743350	prostate_carcinoma.104615	0	.	42742031	42743350	0	1	1319	0
chr21	42743621	42744415	CD4_Plagnol_activated.68491	0	.	42743621	42744415	0	1	794	0
chr21	42745188	42745621	B_Cells_Pritchard.3362561	0	.	42745188	42745621	0	1	433	0
chr21	42756423	42759365	B_Cells_Pritchard.3362599	0	.	42756423	42759365	0	1	2942	0
chr21	42756628	42757805	B_cells_Cheung.203730	0	.	42756628	42757805	0	1	1177	0
chr21	42759651	42761176	B_Cells_Pritchard.3362603	0	.	42759651	42761176	0	1	1525	0
chr21	42759705	42763242	B_cells_Cheung.203732	0	.	42759705	42763242	0	1	3537	0
chr21	42760499	42763175	MIP101.72632	0	.	42760499	42763175	0	1	2676	0
chr21	42876197	42878513	B_cells_Cheung.203753	0	.	42876197	42878513	0	1	2316	0
chr21	42876665	42877719	prostate_carcinoma.104631	0	.	42876665	42877719	0	1	1054	0
chr21	42877079	42878563	H1_polyA+.120753	0	.	42877079	42878563	0	1	1484	0
chr21	42879876	42880672	B_cells_Cheung.203756	0	.	42879876	42880672	0	1	796	0
chr21	42879951	42894026	prostate_normal.62531	0	+	42879951	42894026	0	2	742,1114	0,12961
chr21	42879954	42880654	prostate_carcinoma.104636	0	.	42879954	42880654	0	1	700	0
chr21	42880315	42910599	pHIT000121938	0	+	42880315	42910599	0	3	82,2986,220	0,376,30064
chr21	42884433	42885382	H1_polyA+.120755	0	.	42884433	42885382	0	1	949	0
chr21	42884467	42886235	prostate_carcinoma.104638	0	.	42884467	42886235	0	1	1768	0
chr21	42884565	42885075	prostate_normal.62534	0	.	42884565	42885075	0	1	510	0
chr21	42884724	42885110	A549_Myers.92320	0	.	42884724	42885110	0	1	386	0
chr21	42886277	42886727	B_cells_Cheung.203759	0	.	42886277	42886727	0	1	450	0
chr21	42886837	42887357	B_cells_Cheung.203760	0	.	42886837	42887357	0	1	520	0
chr21	42887796	42889045	B_cells_Cheung.203761	0	.	42887796	42889045	0	1	1249	0
chr21	42892458	42908177	HIT000271859	0	+	42892458	42908177	0	2	1569,146	0,15573
chr21	42892722	42900766	BT20_Thompson.23260	0	-	42892722	42900766	0	2	1305,39	0,8005
chr21	42908505	42909424	prostate_carcinoma.104639	0	-	42908505	42909424	0	4	196,16,85,428	0,227,370,491
chr21	42909132	42909468	A549_Myers.92321	0	.	42909132	42909468	0	1	336	0
chr21	42940473	42941498	H1_polyA+.120757	0	.	42940473	42941498	0	1	1025	0
chr21	42941221	42945462	H9_polyA+.47688	0	+	42941221	42945462	0	2	244,663	0,3578
chr21	42941446	42944423	HIT000093016	0	-	42941446	42944423	0	2	2176,681	0,2296
chr21	42941449	42944423	ENST00000424890	0	-	42941449	42944423	0	2	2173,681	0,2293
chr21	42941480	42944423	Rinn_00028786	0	-	42941480	42944423	0	2	2142,682	0,2261
chr21	42941901	42943176	H9_polyA+.47689	0	.	42941901	42943176	0	1	1275	0
chr21	42942469	42943039	NEC_from_H9.78488	0	.	42942469	42943039	0	1	570	0
chr21	42944768	42945792	Rinn_00029153	0	-	42944768	42945792	0	2	235,104	0,920
chr21	43070234	43071707	H1_polyA+.120797	0	.	43070234	43071707	0	1	1473	0
chr21	43070253	43071126	brain_AmbionMAQC.47125	0	.	43070253	43071126	0	1	873	0
chr21	43070260	43071602	REMC_LuminalBreast.103102	0	.	43070260	43071602	0	1	1342	0
chr21	43070281	43071556	REMC_MyoepithelialBreast.96126	0	.	43070281	43071556	0	1	1275	0
chr21	43070976	43071668	HepG2_Caltech_ENCODE.40517	0	.	43070976	43071668	0	1	692	0
chr21	43072529	43073296	prostate_normal.62579	0	.	43072529	43073296	0	1	767	0
chr21	43072632	43073609	H1_polyA+.120798	0	.	43072632	43073609	0	1	977	0
chr21	43073809	43075127	H1_polyA+.120799	0	.	43073809	43075127	0	1	1318	0
chr21	43074275	43075107	prostate_normal.62581	0	.	43074275	43075107	0	1	832	0
chr21	43074301	43075158	HepG2_Caltech_ENCODE.40518	0	.	43074301	43075158	0	1	857	0
chr21	43098150	43099539	REMC_LuminalBreast.103066	0	.	43098150	43099539	0	1	1389	0
chr21	43098993	43099534	REMC_MyoepithelialBreast.96133	0	.	43098993	43099534	0	1	541	0
chr21	43100843	43110127	REMC_MyoepithelialBreast.96176	0	.	43100843	43110127	0	1	9284	0
chr21	43100941	43130840	REMC_LuminalBreast.103139	0	.	43100941	43130840	0	1	29899	0
chr21	43101012	43102372	REMC_BreastStem.51588	0	.	43101012	43102372	0	1	1360	0
chr21	43101168	43103856	H1_polyA+.120813	0	.	43101168	43103856	0	1	2688	0
chr21	43102113	43103066	HepG2_Caltech_ENCODE.40519	0	.	43102113	43103066	0	1	953	0
chr21	43102589	43103334	REMC_BreastStem.51589	0	.	43102589	43103334	0	1	745	0
chr21	43102825	43103276	prostate_carcinoma.105386	0	.	43102825	43103276	0	1	451	0
chr21	43104520	43105248	H1_polyA+.120814	0	.	43104520	43105248	0	1	728	0
chr21	43105447	43111066	Rinn_00029036	0	+	43105447	43111066	0	2	696,478	0,5141
chr21	43107047	43110122	H1_polyA+.120817	0	.	43107047	43110122	0	1	3075	0
chr21	43107530	43107922	CD4_Plagnol_resting.66478	0	.	43107530	43107922	0	1	392	0
chr21	43110323	43111257	HeLa_polyA+_Chen.37501	0	.	43110323	43111257	0	1	934	0
chr21	43110351	43135203	REMC_MyoepithelialBreast.96177	0	.	43110351	43135203	0	1	24852	0
chr21	43110351	43135203	REMC_MyoepithelialBreast.96178	0	+	43110351	43135203	0	2	1250,23485	0,1367
chr21	43110359	43112847	H1_polyA+.120801	0	.	43110359	43112847	0	1	2488	0
chr21	43110364	43112531	REMC_BreastStem.51594	0	.	43110364	43112531	0	1	2167	0
chr21	43110376	43111053	CD4_Plagnol_resting.66480	0	.	43110376	43111053	0	1	677	0
chr21	43110383	43111172	CD4_Plagnol_activated.68531	0	.	43110383	43111172	0	1	789	0
chr21	43110398	43111037	prostate_carcinoma.105383	0	.	43110398	43111037	0	1	639	0
chr21	43110413	43113000	melanoma_Garraway_short_term_cultures.72729	0	.	43110413	43113000	0	1	2587	0
chr21	43111108	43112442	prostate_carcinoma.105389	0	.	43111108	43112442	0	1	1334	0
chr21	43111364	43115116	HeLa_polyA+_Chen.37502	0	.	43111364	43115116	0	1	3752	0
chr21	43111606	43112272	H9_polyA+.47720	0	.	43111606	43112272	0	1	666	0
chr21	43111611	43112239	B_cells_Cheung.203774	0	.	43111611	43112239	0	1	628	0
chr21	43111851	43112338	prostate_normal.62584	0	.	43111851	43112338	0	1	487	0
chr21	43112971	43119094	H1_polyA+.120810	0	.	43112971	43119094	0	1	6123	0
chr21	43116184	43119450	REMC_BreastStem.51596	0	.	43116184	43119450	0	1	3266	0
chr21	43118645	43119327	HeLa_polyA+_Chen.37504	0	.	43118645	43119327	0	1	682	0
chr21	43123775	43135207	B_cells_Cheung.203867	0	.	43123775	43135207	0	1	11432	0
chr21	43124394	43125705	liver_polyA+.137095	0	-	43124394	43125705	0	4	275,21,617,122	0,276,433,1189
chr21	43124670	43125328	kidney_Gilad.88411	0	-	43124670	43125328	0	2	21,501	0,157
chr21	43124759	43126869	CD4_Plagnol_resting.66486	0	.	43124759	43126869	0	1	2110	0
chr21	43124852	43125432	melanoma_Garraway_short_term_cultures.72734	0	.	43124852	43125432	0	1	580	0
chr21	43124862	43125412	MIP101.72648	0	.	43124862	43125412	0	1	550	0
chr21	43124863	43135183	HeLa_polyA+_Chen.37515	0	-	43124863	43135183	0	2	4856,5135	0,5185
chr21	43124863	43135183	HeLa_polyA+_Chen.37516	0	.	43124863	43135183	0	1	10320	0
chr21	43124870	43125489	CD4_Plagnol_activated.68538	0	.	43124870	43125489	0	1	619	0
chr21	43124957	43126905	HepG2_Caltech_ENCODE.40526	0	.	43124957	43126905	0	1	1948	0
chr21	43124987	43125519	REMC_BreastStem.51601	0	.	43124987	43125519	0	1	532	0
chr21	43125686	43128091	REMC_BreastStem.51602	0	.	43125686	43128091	0	1	2405	0
chr21	43125770	43129575	CD4_Plagnol_activated.68543	0	.	43125770	43129575	0	1	3805	0
chr21	43125815	43126988	H9_polyA+.47722	0	.	43125815	43126988	0	1	1173	0
chr21	43125871	43126838	melanoma_Garraway_short_term_cultures.72735	0	.	43125871	43126838	0	1	967	0
chr21	43125885	43126810	liver_polyA+.137093	0	.	43125885	43126810	0	1	925	0
chr21	43125930	43126824	MIP101.72651	0	.	43125930	43126824	0	1	894	0
chr21	43127026	43129535	melanoma_Garraway_short_term_cultures.72736	0	.	43127026	43129535	0	1	2509	0
chr21	43127027	43129189	CD4_Plagnol_resting.66487	0	.	43127027	43129189	0	1	2162	0
chr21	43127038	43128184	H9_polyA+.47723	0	.	43127038	43128184	0	1	1146	0
chr21	43127765	43128216	MB435_Burge.46071	0	.	43127765	43128216	0	1	451	0
chr21	43128024	43128326	liver_polyA+.137097	0	.	43128024	43128326	0	1	302	0
chr21	43128255	43128829	K562.48010	0	.	43128255	43128829	0	1	574	0
chr21	43128279	43135201	H9_polyA+.47724	0	.	43128279	43135201	0	1	6922	0
chr21	43128468	43135209	H1_polyA+.120885	0	+	43128468	43135209	0	2	1070,3209	0,3532
chr21	43128534	43135180	HepG2_Caltech_ENCODE.40522	0	.	43128534	43135180	0	1	6646	0
chr21	43128706	43130874	Rinn_00029300	0	-	43128706	43130874	0	2	147,1837	0,331
chr21	43128761	43131735	BT20_Thompson.23263	0	.	43128761	43131735	0	1	2974	0
chr21	43128895	43129199	prostate_normal.62587	0	.	43128895	43129199	0	1	304	0
chr21	43128909	43130005	MCF7_Burge_Thompson.33969	0	.	43128909	43130005	0	1	1096	0
chr21	43128920	43131852	K562.48013	0	+	43128920	43131852	0	2	675,9	0,2923
chr21	43128920	43130953	K562.48011	0	.	43128920	43130953	0	1	2033	0
chr21	43128935	43131741	BT474_Burge_Thompson.37838	0	.	43128935	43131741	0	1	2806	0
chr21	43128993	43129524	MeWo_Garraway.38420	0	.	43128993	43129524	0	1	531	0
chr21	43129277	43131606	CD4_Plagnol_resting.66488	0	.	43129277	43131606	0	1	2329	0
chr21	43129317	43131249	T47D_Burge_Thompson.30775	0	.	43129317	43131249	0	1	1932	0
chr21	43129653	43130853	NEC_from_H9.78506	0	.	43129653	43130853	0	1	1200	0
chr21	43129656	43131642	CD4_Plagnol_activated.68544	0	.	43129656	43131642	0	1	1986	0
chr21	43129659	43130602	REMC_BreastStem.51603	0	.	43129659	43130602	0	1	943	0
chr21	43129660	43130803	melanoma_Garraway_short_term_cultures.72737	0	.	43129660	43130803	0	1	1143	0
chr21	43129662	43130463	MCF10A_Thompson.22498	0	.	43129662	43130463	0	1	801	0
chr21	43129690	43130273	MDAMB468_Thompson.25735	0	.	43129690	43130273	0	1	583	0
chr21	43129692	43130177	ZR751_Thompson.25308	0	.	43129692	43130177	0	1	485	0
chr21	43129835	43130862	MB435_Burge.46068	0	.	43129835	43130862	0	1	1027	0
chr21	43129835	43131926	MB435_Burge.46067	0	-	43129835	43131926	0	2	785,122	0,1969
chr21	43130056	43131640	MCF7_Burge_Thompson.33970	0	.	43130056	43131640	0	1	1584	0
chr21	43130224	43130853	lymph_node_Burge.52687	0	.	43130224	43130853	0	1	629	0
chr21	43130272	43130751	brain_AmbionMAQC.47129	0	.	43130272	43130751	0	1	479	0
chr21	43130484	43130784	HME_Burge.42836	0	.	43130484	43130784	0	1	300	0
chr21	43130935	43135197	REMC_LuminalBreast.103140	0	.	43130935	43135197	0	1	4262	0
chr21	43131057	43131663	melanoma_Garraway_short_term_cultures.72738	0	.	43131057	43131663	0	1	606	0
chr21	43131097	43131918	K562.48012	0	.	43131097	43131918	0	1	821	0
chr21	43131829	43135186	CD4_Plagnol_activated.68540	0	.	43131829	43135186	0	1	3357	0
chr21	43131879	43135148	melanoma_Garraway_short_term_cultures.72739	0	.	43131879	43135148	0	1	3269	0
chr21	43132025	43135149	CD4_Plagnol_resting.66498	0	.	43132025	43135149	0	1	3124	0
chr21	43132025	43135166	BT20_Thompson.23264	0	.	43132025	43135166	0	1	3141	0
chr21	43132212	43135149	prostate_normal.62585	0	.	43132212	43135149	0	1	2937	0
chr21	43132215	43135015	BT474_Burge_Thompson.37839	0	.	43132215	43135015	0	1	2800	0
chr21	43132215	43135154	K562.48014	0	.	43132215	43135154	0	1	2939	0
chr21	43132262	43134502	liver_polyA+.137105	0	.	43132262	43134502	0	1	2240	0
chr21	43132318	43134612	T47D_Burge_Thompson.30799	0	.	43132318	43134612	0	1	2294	0
chr21	43132363	43133474	REMC_BreastStem.51604	0	.	43132363	43133474	0	1	1111	0
chr21	43132469	43134730	HeLa_polyA-_Chen.19640	0	.	43132469	43134730	0	1	2261	0
chr21	43133026	43133511	H9_polyA-_Chen.15107	0	.	43133026	43133511	0	1	485	0
chr21	43133176	43133797	MDAMB468_Thompson.25737	0	.	43133176	43133797	0	1	621	0
chr21	43133240	43134985	MDAMB231_Thompson.23267	0	.	43133240	43134985	0	1	1745	0
chr21	43133251	43134621	MeWo_Garraway.38422	0	.	43133251	43134621	0	1	1370	0
chr21	43133287	43134579	brain_AmbionMAQC.47130	0	.	43133287	43134579	0	1	1292	0
chr21	43133295	43133671	kidney_Raymond.104229	0	.	43133295	43133671	0	1	376	0
chr21	43133295	43134146	colon_Raymond.127773	0	.	43133295	43134146	0	1	851	0
chr21	43133295	43134145	spleen_Raymond.201995	0	.	43133295	43134145	0	1	850	0
chr21	43133349	43134938	NEC_from_H9.78510	0	.	43133349	43134938	0	1	1589	0
chr21	43133362	43133841	heart_Raymond.63549	0	.	43133362	43133841	0	1	479	0
chr21	43133362	43134310	ovary_Raymond.258954	0	.	43133362	43134310	0	1	948	0
chr21	43133364	43134118	adipose_Raymond.70656	0	.	43133364	43134118	0	1	754	0
chr21	43133474	43135181	REMC_BreastStem.51605	0	.	43133474	43135181	0	1	1707	0
chr21	43133508	43134013	skeletal_muscle_Raymond.98406	0	.	43133508	43134013	0	1	505	0
chr21	43133562	43134236	ZR751_Thompson.25310	0	.	43133562	43134236	0	1	674	0
chr21	43133605	43134288	MB435_Burge.46078	0	.	43133605	43134288	0	1	683	0
chr21	43133636	43133947	lung_Raymond.92728	0	.	43133636	43133947	0	1	311	0
chr21	43133921	43134485	MDAMB468_Thompson.25739	0	.	43133921	43134485	0	1	564	0
chr21	43133941	43134416	H9_polyA-_Chen.15106	0	.	43133941	43134416	0	1	475	0
chr21	43133983	43134411	HME_Burge.42838	0	.	43133983	43134411	0	1	428	0
chr21	43134288	43134589	MB435_Burge.46079	0	.	43134288	43134589	0	1	301	0
chr21	43134656	43135116	liver_polyA+.137106	0	.	43134656	43135116	0	1	460	0
chr21	43134687	43135126	T47D_Burge_Thompson.30800	0	.	43134687	43135126	0	1	439	0
chr21	43328690	43333173	REMC_BreastStem.51624	0	.	43328690	43333173	0	1	4483	0
chr21	43329590	43333288	B_cells_Cheung.203854	0	.	43329590	43333288	0	1	3698	0
chr21	43329608	43333101	CD4_Plagnol_activated.68560	0	.	43329608	43333101	0	1	3493	0
chr21	43329619	43333154	prostate_carcinoma.104717	0	.	43329619	43333154	0	1	3535	0
chr21	43329655	43339972	REMC_MyoepithelialBreast.96192	0	.	43329655	43339972	0	1	10317	0
chr21	43329745	43332075	MIP101.72702	0	.	43329745	43332075	0	1	2330	0
chr21	43330896	43331428	melanoma_Garraway_short_term_cultures.72782	0	.	43330896	43331428	0	1	532	0
chr21	43330945	43331483	CD4_Plagnol_resting.66573	0	.	43330945	43331483	0	1	538	0
chr21	43331443	43332035	prostate_normal.62650	0	.	43331443	43332035	0	1	592	0
chr21	43331475	43332107	H9_polyA+.47781	0	.	43331475	43332107	0	1	632	0
chr21	43331590	43332030	brain_AmbionMAQC.47175	0	.	43331590	43332030	0	1	440	0
chr21	43333340	43337223	REMC_BreastStem.51625	0	.	43333340	43337223	0	1	3883	0
chr21	43333974	43336230	H9_polyA+.47785	0	.	43333974	43336230	0	1	2256	0
chr21	43334087	43336381	B_cells_Cheung.203856	0	.	43334087	43336381	0	1	2294	0
chr21	43334111	43336329	B_Cells_Pritchard.3363879	0	.	43334111	43336329	0	1	2218	0
chr21	43334111	43335166	HeLa_polyA+_Chen.37531	0	.	43334111	43335166	0	1	1055	0
chr21	43334187	43335872	melanoma_Garraway_short_term_cultures.72783	0	.	43334187	43335872	0	1	1685	0
chr21	43334219	43336200	CD4_Plagnol_activated.68561	0	.	43334219	43336200	0	1	1981	0
chr21	43334317	43335414	prostate_normal.62653	0	.	43334317	43335414	0	1	1097	0
chr21	43334825	43336230	brain_AmbionMAQC.47185	0	.	43334825	43336230	0	1	1405	0
chr21	43334914	43335818	K562.48045	0	.	43334914	43335818	0	1	904	0
chr21	43334965	43336213	CD4_Plagnol_resting.66575	0	.	43334965	43336213	0	1	1248	0
chr21	43335469	43335890	prostate_normal.62654	0	.	43335469	43335890	0	1	421	0
chr21	43337404	43339722	REMC_BreastStem.51616	0	.	43337404	43339722	0	1	2318	0
chr21	43338371	43338929	B_Cells_Pritchard.3363889	0	.	43338371	43338929	0	1	558	0
chr21	43339118	43340007	B_Cells_Pritchard.3363891	0	.	43339118	43340007	0	1	889	0
chr21	43340097	43344592	REMC_LuminalBreast.103135	0	.	43340097	43344592	0	1	4495	0
chr21	43340225	43344557	REMC_MyoepithelialBreast.96188	0	.	43340225	43344557	0	1	4332	0
chr21	43340225	43344557	REMC_MyoepithelialBreast.96187	0	-	43340225	43344557	0	2	1032,1066	0,3266
chr21	43342158	43344528	BT20_Thompson.23280	0	.	43342158	43344528	0	1	2370	0
chr21	43342557	43344540	kidney_Gilad.88511	0	.	43342557	43344540	0	1	1983	0
chr21	43342632	43344586	HeLa_polyA+_Chen.37532	0	.	43342632	43344586	0	1	1954	0
chr21	43342827	43344050	H1_rRNA-depleted_UCSD_REMC.91108	0	.	43342827	43344050	0	1	1223	0
chr21	43342954	43344555	K562.48046	0	.	43342954	43344555	0	1	1601	0
chr21	43343309	43344562	BT474_Burge_Thompson.37851	0	.	43343309	43344562	0	1	1253	0
chr21	43343313	43344551	melanoma_Garraway_short_term_cultures.72785	0	.	43343313	43344551	0	1	1238	0
chr21	43343423	43344560	brain_AmbionMAQC.47265	0	.	43343423	43344560	0	1	1137	0
chr21	43343439	43344029	prostate_normal.62655	0	.	43343439	43344029	0	1	590	0
chr21	43343457	43343912	B_cells_Cheung.203859	0	.	43343457	43343912	0	1	455	0
chr21	43343485	43344083	NEC_from_H9.78542	0	.	43343485	43344083	0	1	598	0
chr21	43343491	43344560	MDAMB468_Thompson.25763	0	.	43343491	43344560	0	1	1069	0
chr21	43371018	43371901	HeLa_polyA+_Chen.37535	0	.	43371018	43371901	0	1	883	0
chr21	43372470	43374132	HeLa_polyA+_Chen.37536	0	.	43372470	43374132	0	1	1662	0
chr21	43372811	43373116	liver_polyA+.137537	0	.	43372811	43373116	0	1	305	0
chr21	43373032	43374248	HepG2_Caltech_ENCODE.40565	0	.	43373032	43374248	0	1	1216	0
chr21	43373448	43373825	liver_polyA+.137539	0	.	43373448	43373825	0	1	377	0
chr21	43373472	43373805	kidney_Gilad.88490	0	.	43373472	43373805	0	1	333	0
chr21	43374641	43374945	HeLa_polyA+_Chen.37537	0	.	43374641	43374945	0	1	304	0
chr21	43375444	43377715	HepG2_Caltech_ENCODE.40566	0	.	43375444	43377715	0	1	2271	0
chr21	43375495	43376660	REMC_MyoepithelialBreast.96194	0	.	43375495	43376660	0	1	1165	0
chr21	43375520	43376430	HeLa_polyA+_Chen.37538	0	.	43375520	43376430	0	1	910	0
chr21	43376507	43377816	HeLa_polyA+_Chen.37539	0	.	43376507	43377816	0	1	1309	0
chr21	43380452	43381261	HeLa_polyA+_Chen.37542	0	.	43380452	43381261	0	1	809	0
chr21	43380505	43381736	HepG2_Caltech_ENCODE.40567	0	.	43380505	43381736	0	1	1231	0
chr21	43380533	43381865	REMC_MyoepithelialBreast.96195	0	.	43380533	43381865	0	1	1332	0
chr21	43419320	43425298	B_cells_Cheung.203965	0	.	43419320	43425298	0	1	5978	0
chr21	43419368	43423947	REMC_LuminalBreast.103150	0	.	43419368	43423947	0	1	4579	0
chr21	43419376	43425237	B_Cells_Pritchard.3365637	0	+	43419376	43425237	0	2	3165,1290	0,4571
chr21	43420804	43422153	MIP101.72714	0	.	43420804	43422153	0	1	1349	0
chr21	43420817	43423108	H1_polyA+.121314	0	.	43420817	43423108	0	1	2291	0
chr21	43421287	43422134	prostate_carcinoma.104730	0	.	43421287	43422134	0	1	847	0
chr21	43423193	43425146	H1_polyA+.121315	0	.	43423193	43425146	0	1	1953	0
chr21	43423308	43424105	MIP101.72715	0	.	43423308	43424105	0	1	797	0
chr21	43427567	43431397	HepG2_Caltech_ENCODE.40569	0	.	43427567	43431397	0	1	3830	0
chr21	43427735	43428400	prostate_normal.62662	0	.	43427735	43428400	0	1	665	0
chr21	43427808	43428405	B_Cells_Pritchard.3365641	0	-	43427808	43428405	0	1	597	0
chr21	43428704	43435761	B_Cells_Pritchard.3365643	0	+	43428704	43435761	0	1	7057	0
chr21	43428884	43434791	B_Cells_Pritchard.3365645	0	-	43428884	43434791	0	3	87,248,67	0,367,5840
chr21	43430056	43431208	REMC_LuminalBreast.103152	0	.	43430056	43431208	0	1	1152	0
chr21	43430064	43431468	H1_polyA+.121318	0	.	43430064	43431468	0	1	1404	0
chr21	43430117	43431221	prostate_carcinoma.104735	0	.	43430117	43431221	0	1	1104	0
chr21	43431341	43432928	REMC_LuminalBreast.103153	0	.	43431341	43432928	0	1	1587	0
chr21	43433024	43434818	REMC_LuminalBreast.103154	0	-	43433024	43434818	0	2	1266,365	0,1429
chr21	43433700	43434271	Rinn_00028944	0	-	43433700	43434271	0	2	292,132	0,439
chr21	43434062	43434939	H1_polyA+.121320	0	.	43434062	43434939	0	1	877	0
chr21	43436009	43445384	B_Cells_Pritchard.3365647	0	+	43436009	43445384	0	2	3209,1916	0,7459
chr21	43436152	43437877	prostate_carcinoma.104739	0	.	43436152	43437877	0	1	1725	0
chr21	43436177	43437094	H1_polyA+.121321	0	.	43436177	43437094	0	1	917	0
chr21	43436614	43437559	prostate_normal.62663	0	.	43436614	43437559	0	1	945	0
chr21	43438159	43442997	B_cells_Cheung.203874	0	+	43438159	43442997	0	2	488,1728	0,3110
chr21	43441233	43442997	B_cells_Cheung.203876	0	.	43441233	43442997	0	1	1764	0
chr21	43441424	43442027	REMC_LuminalBreast.103156	0	.	43441424	43442027	0	1	603	0
chr21	43441874	43442981	B_Cells_Pritchard.3365657	0	+	43441874	43442981	0	1	1107	0
chr21	43441947	43443073	H1_polyA+.121325	0	.	43441947	43443073	0	1	1126	0
chr21	43442044	43442855	MIP101.72724	0	.	43442044	43442855	0	1	811	0
chr21	43442459	43442928	prostate_carcinoma.104741	0	.	43442459	43442928	0	1	469	0
chr21	43446068	43450182	HeLa_polyA+_Chen.37607	0	.	43446068	43450182	0	1	4114	0
chr21	43446526	43449739	MDAMB468_Thompson.25775	0	.	43446526	43449739	0	1	3213	0
chr21	43446793	43448027	B_cells_Cheung.203879	0	.	43446793	43448027	0	1	1234	0
chr21	43446799	43449244	MCF10A_Thompson.22518	0	.	43446799	43449244	0	1	2445	0
chr21	43447502	43449034	REMC_MyoepithelialBreast.96197	0	.	43447502	43449034	0	1	1532	0
chr21	43448077	43449020	B_cells_Cheung.203880	0	.	43448077	43449020	0	1	943	0
chr21	43448723	43449040	liver_polyA+.137175	0	.	43448723	43449040	0	1	317	0
chr21	43457953	43459462	H1_polyA+.120914	0	.	43457953	43459462	0	1	1509	0
chr21	43458807	43459459	B_Cells_Pritchard.3363981	0	.	43458807	43459459	0	1	652	0
chr21	43459213	43459536	liver_polyA+.137188	0	.	43459213	43459536	0	1	323	0
chr21	43759489	43760710	H1_polyA+.120939	0	.	43759489	43760710	0	1	1221	0
chr21	43760165	43763370	REMC_MyoepithelialBreast.96262	0	.	43760165	43763370	0	1	3205	0
chr21	43761406	43763480	H1_polyA+.120940	0	.	43761406	43763480	0	1	2074	0
chr21	43762118	43763323	REMC_LuminalBreast.103188	0	.	43762118	43763323	0	1	1205	0
chr21	43764410	43765636	REMC_MyoepithelialBreast.96263	0	.	43764410	43765636	0	1	1226	0
chr21	43766784	43767836	H1_polyA+.120938	0	.	43766784	43767836	0	1	1052	0
chr21	43770578	43771494	REMC_MyoepithelialBreast.96265	0	.	43770578	43771494	0	1	916	0
chr21	43770921	43771704	REMC_LuminalBreast.103190	0	.	43770921	43771704	0	1	783	0
chr21	44022929	44024070	HepG2_Caltech_ENCODE.40610	0	-	44022929	44024070	0	2	483,42	0,1099
chr21	44030448	44032149	REMC_LuminalBreast.103340	0	.	44030448	44032149	0	1	1701	0
chr21	44030468	44032011	B_cells_Cheung.204068	0	.	44030468	44032011	0	1	1543	0
chr21	44049693	44050867	MDAMB468_Thompson.25789	0	.	44049693	44050867	0	1	1174	0
chr21	44049829	44054908	Rinn_00029168	0	-	44049829	44054908	0	3	1068,294,15	0,4709,5064
chr21	44050037	44054294	HIT000051046	0	-	44050037	44054294	0	2	860,1185	0,3072
chr21	44050042	44054640	HIT000093407	0	-	44050042	44054640	0	2	855,101	0,4497
chr21	44050066	44054670	ENST00000448247	0	-	44050066	44054670	0	4	831,276,651,131	0,1206,3043,4473
chr21	44050066	44054640	ENST00000437258	0	-	44050066	44054640	0	2	831,101	0,4473
chr21	44050067	44054670	Rinn_00028788	0	-	44050067	44054670	0	2	830,132	0,4471
chr21	44050068	44054670	HIT000018277	0	-	44050068	44054670	0	4	829,276,651,131	0,1204,3041,4471
chr21	44050076	44050874	MCF10A_Thompson.22545	0	.	44050076	44050874	0	1	798	0
chr21	44050123	44051070	H9_polyA+.47829	0	.	44050123	44051070	0	1	947	0
chr21	44050136	44051006	MCF7_Burge_Thompson.34036	0	.	44050136	44051006	0	1	870	0
chr21	44050141	44051733	prostate_normal.62724	0	.	44050141	44051733	0	1	1592	0
chr21	44050185	44050922	CD4_Plagnol_activated.68612	0	.	44050185	44050922	0	1	737	0
chr21	44050198	44050558	A549_Myers.92524	0	.	44050198	44050558	0	1	360	0
chr21	44050210	44051241	HeLa_polyA+_Chen.37693	0	.	44050210	44051241	0	1	1031	0
chr21	44050605	44051538	REMC_BreastStem.51645	0	.	44050605	44051538	0	1	933	0
chr21	44050678	44051746	BT20_Thompson.23318	0	.	44050678	44051746	0	1	1068	0
chr21	44051227	44051730	melanoma_Garraway_short_term_cultures.72847	0	.	44051227	44051730	0	1	503	0
chr21	44052048	44054010	MIP101.72920	0	.	44052048	44054010	0	1	1962	0
chr21	44052354	44053925	H9_polyA+.47830	0	.	44052354	44053925	0	1	1571	0
chr21	44052603	44053961	K562.48103	0	.	44052603	44053961	0	1	1358	0
chr21	44053515	44054743	Rinn_00029309	0	-	44053515	44054743	0	2	148,205	0,1023
chr21	44053893	44054388	HME_Burge.42927	0	.	44053893	44054388	0	1	495	0
chr21	44053909	44054537	CD4_Plagnol_activated.68616	0	.	44053909	44054537	0	1	628	0
chr21	44053955	44054710	MCF7_Burge_Thompson.34037	0	.	44053955	44054710	0	1	755	0
chr21	44054025	44054735	H9_polyA+.47831	0	.	44054025	44054735	0	1	710	0
chr21	44054128	44054844	REMC_BreastStem.51646	0	.	44054128	44054844	0	1	716	0
chr21	44054412	44055200	K562.48104	0	.	44054412	44055200	0	1	788	0
chr21	44054584	44055740	A549_Myers.92525	0	.	44054584	44055740	0	1	1156	0
chr21	44054605	44055667	brain_AmbionMAQC.47255	0	.	44054605	44055667	0	1	1062	0
chr21	44054625	44055038	khalil_1323	0	.	44054625	44055038	0	1	413	0
chr21	44054774	44055560	HME_Burge.42928	0	.	44054774	44055560	0	1	786	0
chr21	44054957	44055363	HeLa_polyA+_Chen.37695	0	.	44054957	44055363	0	1	406	0
chr21	44055172	44055611	H9_polyA+.47832	0	.	44055172	44055611	0	1	439	0
chr21	44056968	44057877	MDAMB231_Thompson.23299	0	.	44056968	44057877	0	1	909	0
chr21	44057377	44058234	CD4_Plagnol_activated.68618	0	.	44057377	44058234	0	1	857	0
chr21	44057393	44058241	A549_Myers.92527	0	.	44057393	44058241	0	1	848	0
chr21	44057515	44058172	BT474_Burge_Thompson.37883	0	.	44057515	44058172	0	1	657	0
chr21	44057538	44058189	H9_polyA+.47834	0	.	44057538	44058189	0	1	651	0
chr21	44057579	44058183	MCF7_Burge_Thompson.34039	0	.	44057579	44058183	0	1	604	0
chr21	44058432	44059535	B_cells_Cheung.203969	0	.	44058432	44059535	0	1	1103	0
chr21	44058513	44059514	CD4_Plagnol_activated.68619	0	.	44058513	44059514	0	1	1001	0
chr21	44058517	44059524	prostate_carcinoma.104838	0	.	44058517	44059524	0	1	1007	0
chr21	44058517	44059527	B_Cells_Pritchard.3365665	0	-	44058517	44059527	0	1	1010	0
chr21	44058521	44059554	prostate_normal.62727	0	.	44058521	44059554	0	1	1033	0
chr21	44058575	44059465	K562.48107	0	.	44058575	44059465	0	1	890	0
chr21	44058596	44059520	BT20_Thompson.23320	0	.	44058596	44059520	0	1	924	0
chr21	44058653	44059519	brain_AmbionMAQC.47257	0	.	44058653	44059519	0	1	866	0
chr21	44058906	44059452	BT474_Burge_Thompson.37884	0	.	44058906	44059452	0	1	546	0
chr21	44058971	44059529	H9_polyA+.47836	0	.	44058971	44059529	0	1	558	0
chr21	44059111	44059451	MCF7_Burge_Thompson.34040	0	.	44059111	44059451	0	1	340	0
chr21	44059704	44065184	B_cells_Cheung.203970	0	.	44059704	44065184	0	1	5480	0
chr21	44059706	44068643	B_Cells_Pritchard.3365667	0	+	44059706	44068643	0	3	5462,747,784	0,5515,8153
chr21	44059706	44065335	B_Cells_Pritchard.3365669	0	-	44059706	44065335	0	4	2889,498,1841,103	0,3021,3612,5526
chr21	44059714	44060934	melanoma_Garraway_short_term_cultures.72849	0	.	44059714	44060934	0	1	1220	0
chr21	44059719	44065995	H1_polyA+.120977	0	.	44059719	44065995	0	1	6276	0
chr21	44059730	44063674	REMC_LuminalBreast.103344	0	.	44059730	44063674	0	1	3944	0
chr21	44059747	44066017	REMC_MyoepithelialBreast.96306	0	.	44059747	44066017	0	1	6270	0
chr21	44059914	44060877	REMC_BreastStem.51649	0	.	44059914	44060877	0	1	963	0
chr21	44059929	44062486	MIP101.72771	0	.	44059929	44062486	0	1	2557	0
chr21	44060136	44062548	prostate_carcinoma.104840	0	.	44060136	44062548	0	1	2412	0
chr21	44060181	44061020	H9_polyA+.47837	0	.	44060181	44061020	0	1	839	0
chr21	44060181	44063816	BT20_Thompson.23321	0	.	44060181	44063816	0	1	3635	0
chr21	44060220	44060619	A549_Myers.92529	0	.	44060220	44060619	0	1	399	0
chr21	44060268	44060838	brain_AmbionMAQC.47258	0	.	44060268	44060838	0	1	570	0
chr21	44060674	44061939	BT474_Burge_Thompson.37885	0	.	44060674	44061939	0	1	1265	0
chr21	44060968	44062309	brain_AmbionMAQC.47259	0	.	44060968	44062309	0	1	1341	0
chr21	44061018	44062517	prostate_normal.62728	0	.	44061018	44062517	0	1	1499	0
chr21	44061066	44063526	REMC_BreastStem.51650	0	.	44061066	44063526	0	1	2460	0
chr21	44061198	44061680	H9_polyA+.47838	0	.	44061198	44061680	0	1	482	0
chr21	44061444	44062462	MCF7_Burge_Thompson.34041	0	.	44061444	44062462	0	1	1018	0
chr21	44061637	44062570	MDAMB231_Thompson.23300	0	.	44061637	44062570	0	1	933	0
chr21	44061681	44062109	A549_Myers.92530	0	.	44061681	44062109	0	1	428	0
chr21	44061690	44062615	HepG2_Caltech_ENCODE.40614	0	.	44061690	44062615	0	1	925	0
chr21	44061773	44062506	H9_polyA+.47839	0	.	44061773	44062506	0	1	733	0
chr21	44061778	44062113	HeLa_polyA+_Chen.37699	0	.	44061778	44062113	0	1	335	0
chr21	44062155	44065237	K562.48108	0	.	44062155	44065237	0	1	3082	0
chr21	44062638	44065167	prostate_carcinoma.104841	0	.	44062638	44065167	0	1	2529	0
chr21	44062666	44063571	MIP101.72772	0	.	44062666	44063571	0	1	905	0
chr21	44062712	44063524	HepG2_Caltech_ENCODE.40615	0	.	44062712	44063524	0	1	812	0
chr21	44062717	44063684	MDAMB231_Thompson.23301	0	.	44062717	44063684	0	1	967	0
chr21	44062722	44063072	HeLa_polyA+_Chen.37701	0	.	44062722	44063072	0	1	350	0
chr21	44062762	44063802	H9_polyA+.47840	0	.	44062762	44063802	0	1	1040	0
chr21	44063101	44065145	prostate_normal.62730	0	+	44063101	44065145	0	2	9,1333	0,711
chr21	44063315	44064816	brain_AmbionMAQC.47261	0	.	44063315	44064816	0	1	1501	0
chr21	44063661	44064543	MCF7_Burge_Thompson.34043	0	.	44063661	44064543	0	1	882	0
chr21	44063708	44065157	MIP101.72773	0	.	44063708	44065157	0	1	1449	0
chr21	44063746	44065998	REMC_LuminalBreast.103345	0	.	44063746	44065998	0	1	2252	0
chr21	44063844	44065142	MDAMB231_Thompson.23302	0	.	44063844	44065142	0	1	1298	0
chr21	44063853	44065163	H9_polyA+.47841	0	.	44063853	44065163	0	1	1310	0
chr21	44063871	44065153	HepG2_Caltech_ENCODE.40616	0	.	44063871	44065153	0	1	1282	0
chr21	44063876	44065330	BT20_Thompson.23322	0	.	44063876	44065330	0	1	1454	0
chr21	44064081	44064794	CD4_Plagnol_activated.68631	0	.	44064081	44064794	0	1	713	0
chr21	44066445	44066967	REMC_MyoepithelialBreast.96285	0	.	44066445	44066967	0	1	522	0
chr21	44067666	44069369	REMC_BreastStem.51652	0	.	44067666	44069369	0	1	1703	0
chr21	44067861	44070208	H1_polyA+.120979	0	.	44067861	44070208	0	1	2347	0
chr21	44067886	44074464	REMC_MyoepithelialBreast.96286	0	.	44067886	44074464	0	1	6578	0
chr21	44067888	44072006	REMC_LuminalBreast.103346	0	.	44067888	44072006	0	1	4118	0
chr21	44068277	44070815	melanoma_Garraway_short_term_cultures.72852	0	.	44068277	44070815	0	1	2538	0
chr21	44068744	44070514	B_Cells_Pritchard.3365675	0	+	44068744	44070514	0	1	1770	0
chr21	44068823	44072061	B_cells_Cheung.203974	0	.	44068823	44072061	0	1	3238	0
chr21	44069475	44071036	REMC_BreastStem.51653	0	.	44069475	44071036	0	1	1561	0
chr21	44070258	44072097	H1_polyA+.120980	0	.	44070258	44072097	0	1	1839	0
chr21	44070627	44071726	B_Cells_Pritchard.3365677	0	+	44070627	44071726	0	1	1099	0
chr21	44071274	44074974	REMC_BreastStem.51654	0	.	44071274	44074974	0	1	3700	0
chr21	44072081	44075933	REMC_LuminalBreast.103347	0	.	44072081	44075933	0	1	3852	0
chr21	44072387	44074635	H1_polyA+.120981	0	.	44072387	44074635	0	1	2248	0
chr21	44072522	44074480	melanoma_Garraway_short_term_cultures.72854	0	.	44072522	44074480	0	1	1958	0
chr21	44072773	44074478	B_cells_Cheung.203976	0	.	44072773	44074478	0	1	1705	0
chr21	44073340	44074482	B_Cells_Pritchard.3365685	0	.	44073340	44074482	0	1	1142	0
chr21	44074538	44075913	REMC_MyoepithelialBreast.96287	0	.	44074538	44075913	0	1	1375	0
chr21	44074708	44075510	H1_polyA+.120982	0	.	44074708	44075510	0	1	802	0
chr21	44074733	44075064	B_cells_Cheung.203977	0	.	44074733	44075064	0	1	331	0
chr21	44076318	44077519	REMC_LuminalBreast.103348	0	.	44076318	44077519	0	1	1201	0
chr21	44076515	44077584	REMC_MyoepithelialBreast.96288	0	.	44076515	44077584	0	1	1069	0
chr21	44076903	44077580	H1_polyA+.120983	0	.	44076903	44077580	0	1	677	0
chr21	44078815	44081656	REMC_MyoepithelialBreast.96289	0	.	44078815	44081656	0	1	2841	0
chr21	44079484	44080591	REMC_LuminalBreast.103350	0	.	44079484	44080591	0	1	1107	0
chr21	44088959	44091320	REMC_LuminalBreast.103355	0	.	44088959	44091320	0	1	2361	0
chr21	44089666	44090446	H1_polyA+.120986	0	.	44089666	44090446	0	1	780	0
chr21	44091593	44092685	REMC_LuminalBreast.103356	0	.	44091593	44092685	0	1	1092	0
chr21	44091945	44092369	B_Cells_Pritchard.3365771	0	.	44091945	44092369	0	1	424	0
chr21	44097970	44098968	B_Cells_Pritchard.3365789	0	.	44097970	44098968	0	1	998	0
chr21	44098114	44099294	REMC_MyoepithelialBreast.96291	0	.	44098114	44099294	0	1	1180	0
chr21	44103439	44104560	REMC_MyoepithelialBreast.96293	0	.	44103439	44104560	0	1	1121	0
chr21	44103541	44104441	REMC_LuminalBreast.103210	0	.	44103541	44104441	0	1	900	0
chr21	44105506	44106011	CD4_Plagnol_resting.66597	0	.	44105506	44106011	0	1	505	0
chr21	44246070	44246381	B_Cells_Pritchard.3366045	0	.	44246070	44246381	0	1	311	0
chr21	44246547	44247184	B_cells_Cheung.203991	0	.	44246547	44247184	0	1	637	0
chr21	44246712	44247179	B_Cells_Pritchard.3366049	0	.	44246712	44247179	0	1	467	0
chr21	44251973	44253021	B_cells_Cheung.203997	0	.	44251973	44253021	0	1	1048	0
chr21	44391178	44392488	brain_AmbionMAQC.47303	0	.	44391178	44392488	0	1	1310	0
chr21	44391222	44391644	A549_Myers.92577	0	.	44391222	44391644	0	1	422	0
chr21	44391337	44391981	melanoma_Garraway_short_term_cultures.72880	0	.	44391337	44391981	0	1	644	0
chr21	44391380	44391994	HeLa_polyA+_Chen.37729	0	.	44391380	44391994	0	1	614	0
chr21	44391416	44392453	K562.48212	0	.	44391416	44392453	0	1	1037	0
chr21	44392040	44392439	melanoma_Garraway_short_term_cultures.72881	0	.	44392040	44392439	0	1	399	0
chr21	44392142	44392856	HeLa_polyA+_Chen.37730	0	.	44392142	44392856	0	1	714	0
chr21	44392165	44392870	liver_polyA+.137391	0	.	44392165	44392870	0	1	705	0
chr21	44392180	44395314	CD4_Plagnol_activated.68659	0	.	44392180	44395314	0	1	3134	0
chr21	44392256	44392856	MCF7_Burge_Thompson.34096	0	.	44392256	44392856	0	1	600	0
chr21	44392270	44394808	REMC_MyoepithelialBreast.96314	0	.	44392270	44394808	0	1	2538	0
chr21	44392302	44393249	MIP101.72853	0	.	44392302	44393249	0	1	947	0
chr21	44392525	44394319	melanoma_Garraway_short_term_cultures.72882	0	.	44392525	44394319	0	1	1794	0
chr21	44392596	44393474	brain_AmbionMAQC.47304	0	.	44392596	44393474	0	1	878	0
chr21	44392970	44393581	HeLa_polyA+_Chen.37731	0	.	44392970	44393581	0	1	611	0
chr21	44393124	44394917	REMC_LuminalBreast.103284	0	.	44393124	44394917	0	1	1793	0
chr21	44393126	44394789	REMC_BreastStem.51669	0	.	44393126	44394789	0	1	1663	0
chr21	44394389	44395862	prostate_carcinoma.105013	0	-	44394389	44395862	0	2	359,75	0,1398
chr21	44394389	44395045	prostate_carcinoma.105014	0	.	44394389	44395045	0	1	656	0
chr21	44395250	44398790	H1_polyA+.121199	0	.	44395250	44398790	0	1	3540	0
chr21	44395951	44400607	CD4_Plagnol_resting.66668	0	.	44395951	44400607	0	1	4656	0
chr21	44396915	44398590	prostate_normal.62772	0	.	44396915	44398590	0	1	1675	0
chr21	44397027	44400570	liver_polyA+.137394	0	+	44397027	44400570	0	2	66,760	0,2783
chr21	44397073	44398527	MIP101.72857	0	.	44397073	44398527	0	1	1454	0
chr21	44397120	44398763	HepG2_Caltech_ENCODE.40637	0	.	44397120	44398763	0	1	1643	0
chr21	44397122	44397857	K562.48216	0	.	44397122	44397857	0	1	735	0
chr21	44397423	44397927	HeLa_polyA+_Chen.37734	0	.	44397423	44397927	0	1	504	0
chr21	44397431	44402951	CD4_Plagnol_activated.68665	0	+	44397431	44402951	0	2	256,2125	0,3395
chr21	44397431	44400613	CD4_Plagnol_activated.68664	0	.	44397431	44400613	0	1	3182	0
chr21	44397479	44398774	brain_AmbionMAQC.47306	0	.	44397479	44398774	0	1	1295	0
chr21	44397520	44398525	H9_polyA+.47860	0	.	44397520	44398525	0	1	1005	0
chr21	44398783	44400570	liver_polyA+.137395	0	.	44398783	44400570	0	1	1787	0
chr21	44398803	44400570	prostate_normal.62774	0	.	44398803	44400570	0	1	1767	0
chr21	44398848	44400615	H1_polyA+.121200	0	.	44398848	44400615	0	1	1767	0
chr21	44398977	44400571	brain_AmbionMAQC.47307	0	.	44398977	44400571	0	1	1594	0
chr21	44399033	44400586	MIP101.72858	0	.	44399033	44400586	0	1	1553	0
chr21	44399158	44400570	H9_polyA+.47861	0	.	44399158	44400570	0	1	1412	0
chr21	44399192	44400474	REMC_LuminalBreast.103288	0	.	44399192	44400474	0	1	1282	0
chr21	44399262	44400607	REMC_MyoepithelialBreast.96317	0	.	44399262	44400607	0	1	1345	0
chr21	44399357	44399963	MCF7_Burge_Thompson.34098	0	.	44399357	44399963	0	1	606	0
chr21	44399615	44400584	K562.48217	0	.	44399615	44400584	0	1	969	0
chr21	44399988	44400589	HeLa_polyA+_Chen.37737	0	.	44399988	44400589	0	1	601	0
chr21	44400017	44400610	melanoma_Garraway_short_term_cultures.72885	0	.	44400017	44400610	0	1	593	0
chr21	44400733	44405112	Rinn_00029171	0	-	44400733	44405112	0	2	2352,1773	0,2606
chr21	44400749	44402697	K562.48218	0	.	44400749	44402697	0	1	1948	0
chr21	44400821	44402684	brain_AmbionMAQC.47308	0	.	44400821	44402684	0	1	1863	0
chr21	44400825	44406318	CD4_Plagnol_resting.66667	0	.	44400825	44406318	0	1	5493	0
chr21	44400830	44402700	prostate_normal.62773	0	.	44400830	44402700	0	1	1870	0
chr21	44400837	44402693	MIP101.72859	0	.	44400837	44402693	0	1	1856	0
chr21	44401356	44401892	CD4_Snyder.78201	0	.	44401356	44401892	0	1	536	0
chr21	44401630	44402060	REMC_MyoepithelialBreast.96319	0	.	44401630	44402060	0	1	430	0
chr21	44401727	44402670	liver_polyA+.137352	0	.	44401727	44402670	0	1	943	0
chr21	44401727	44404043	liver_polyA+.137355	0	-	44401727	44404043	0	2	626,703	0,1613
chr21	44401747	44402323	lymph_node_Burge.52908	0	.	44401747	44402323	0	1	576	0
chr21	44401873	44402261	HeLa_polyA+_Chen.37740	0	.	44401873	44402261	0	1	388	0
chr21	44401978	44402398	CD4_Snyder.78209	0	.	44401978	44402398	0	1	420	0
chr21	44401992	44402336	breast_Burge.42640	0	.	44401992	44402336	0	1	344	0
chr21	44402226	44404587	REMC_MyoepithelialBreast.96320	0	.	44402226	44404587	0	1	2361	0
chr21	44402777	44403702	liver_polyA+.137356	0	+	44402777	44403702	0	2	93,345	0,580
chr21	44402813	44404806	Rinn_00029311	0	-	44402813	44404806	0	3	272,326,672	0,526,1321
chr21	44402922	44403893	Rinn_00029312	0	-	44402922	44403893	0	3	163,326,54	0,417,917
chr21	44403001	44405440	H9_polyA+.47864	0	.	44403001	44405440	0	1	2439	0
chr21	44403041	44404878	CD4_Plagnol_activated.68666	0	.	44403041	44404878	0	1	1837	0
chr21	44403049	44411167	prostate_normal.62775	0	+	44403049	44411167	0	2	3125,897	0,7221
chr21	44403049	44424261	prostate_normal.62776	0	-	44403049	44424261	0	6	616,738,861,1067,52,3750	0,1086,4685,5770,16784,17462
chr21	44403051	44406298	H1_polyA+.121201	0	.	44403051	44406298	0	1	3247	0
chr21	44403065	44403867	CD4_Snyder.78208	0	.	44403065	44403867	0	1	802	0
chr21	44403096	44405271	MIP101.72860	0	.	44403096	44405271	0	1	2175	0
chr21	44403108	44404043	liver_polyA+.137353	0	.	44403108	44404043	0	1	935	0
chr21	44403180	44405688	brain_AmbionMAQC.47309	0	.	44403180	44405688	0	1	2508	0
chr21	44403290	44403955	MCF7_Burge_Thompson.34100	0	.	44403290	44403955	0	1	665	0
chr21	44403380	44403872	HeLa_polyA+_Chen.37741	0	.	44403380	44403872	0	1	492	0
chr21	44403484	44403889	REMC_LuminalBreast.103289	0	.	44403484	44403889	0	1	405	0
chr21	44404097	44409249	MCF7_Burge_Thompson.34101	0	+	44404097	44409249	0	2	296,228	0,4924
chr21	44404144	44404849	adipose_Burge.40805	0	.	44404144	44404849	0	1	705	0
chr21	44404155	44405441	liver_polyA+.137357	0	.	44404155	44405441	0	1	1286	0
chr21	44404257	44404580	breast_Burge.42642	0	.	44404257	44404580	0	1	323	0
chr21	44404297	44405036	BT20_Thompson.23328	0	.	44404297	44405036	0	1	739	0
chr21	44404315	44404699	HME_Burge.42960	0	.	44404315	44404699	0	1	384	0
chr21	44404316	44404969	BT474_Burge_Thompson.37894	0	.	44404316	44404969	0	1	653	0
chr21	44404339	44405057	T47D_Burge_Thompson.30844	0	.	44404339	44405057	0	1	718	0
chr21	44404345	44405184	HeLa_polyA+_Chen.37742	0	.	44404345	44405184	0	1	839	0
chr21	44404395	44405123	MCF7_Burge_Thompson.34102	0	.	44404395	44405123	0	1	728	0
chr21	44404666	44405309	A549_Myers.92579	0	.	44404666	44405309	0	1	643	0
chr21	44404695	44405862	REMC_MyoepithelialBreast.96321	0	.	44404695	44405862	0	1	1167	0
chr21	44405101	44405737	K562.48219	0	.	44405101	44405737	0	1	636	0
chr21	44405347	44405824	HeLa_polyA+_Chen.37743	0	.	44405347	44405824	0	1	477	0
chr21	44405620	44406043	CD4_Plagnol_activated.68668	0	.	44405620	44406043	0	1	423	0
chr21	44406537	44408683	H1_polyA+.121202	0	.	44406537	44408683	0	1	2146	0
chr21	44406542	44408624	REMC_LuminalBreast.103290	0	.	44406542	44408624	0	1	2082	0
chr21	44406553	44409276	K562.48220	0	.	44406553	44409276	0	1	2723	0
chr21	44406568	44407652	liver_polyA+.137359	0	.	44406568	44407652	0	1	1084	0
chr21	44406569	44409943	REMC_MyoepithelialBreast.96322	0	.	44406569	44409943	0	1	3374	0
chr21	44406569	44408607	CD4_Plagnol_resting.66669	0	.	44406569	44408607	0	1	2038	0
chr21	44406575	44408605	CD4_Plagnol_activated.68669	0	.	44406575	44408605	0	1	2030	0
chr21	44406583	44408642	MIP101.72861	0	.	44406583	44408642	0	1	2059	0
chr21	44406583	44408628	HepG2_Caltech_ENCODE.40638	0	.	44406583	44408628	0	1	2045	0
chr21	44406594	44407602	melanoma_Garraway_short_term_cultures.72887	0	.	44406594	44407602	0	1	1008	0
chr21	44406597	44408682	brain_AmbionMAQC.47310	0	.	44406597	44408682	0	1	2085	0
chr21	44406602	44407174	BT474_Burge_Thompson.37895	0	.	44406602	44407174	0	1	572	0
chr21	44406624	44407515	HeLa_polyA+_Chen.37744	0	.	44406624	44407515	0	1	891	0
chr21	44406668	44407672	H9_polyA+.47865	0	.	44406668	44407672	0	1	1004	0
chr21	44406803	44407597	MCF7_Burge_Thompson.34103	0	.	44406803	44407597	0	1	794	0
chr21	44406983	44407500	A549_Myers.92580	0	.	44406983	44407500	0	1	517	0
chr21	44407597	44408242	T47D_Burge_Thompson.30845	0	.	44407597	44408242	0	1	645	0
chr21	44407722	44408644	H9_polyA+.47866	0	.	44407722	44408644	0	1	922	0
chr21	44407780	44408552	liver_polyA+.137360	0	.	44407780	44408552	0	1	772	0
chr21	44407789	44408572	HeLa_polyA+_Chen.37709	0	.	44407789	44408572	0	1	783	0
chr21	44407868	44408575	MCF7_Burge_Thompson.34104	0	.	44407868	44408575	0	1	707	0
chr21	44408119	44408659	CD4_Snyder.78211	0	.	44408119	44408659	0	1	540	0
chr21	44408812	44409282	H9_polyA+.47867	0	.	44408812	44409282	0	1	470	0
chr21	44408821	44409325	HeLa_polyA+_Chen.37710	0	.	44408821	44409325	0	1	504	0
chr21	44408822	44409957	H1_polyA+.121203	0	.	44408822	44409957	0	1	1135	0
chr21	44408832	44412429	HepG2_Caltech_ENCODE.40639	0	.	44408832	44412429	0	1	3597	0
chr21	44408840	44412390	CD4_Plagnol_resting.66670	0	.	44408840	44412390	0	1	3550	0
chr21	44408840	44412384	brain_AmbionMAQC.47311	0	.	44408840	44412384	0	1	3544	0
chr21	44408842	44409577	CD4_Plagnol_activated.68670	0	.	44408842	44409577	0	1	735	0
chr21	44408852	44409895	MIP101.72862	0	.	44408852	44409895	0	1	1043	0
chr21	44408859	44409481	liver_polyA+.137354	0	.	44408859	44409481	0	1	622	0
chr21	44408877	44409284	CD4_Snyder.78212	0	.	44408877	44409284	0	1	407	0
chr21	44410008	44412415	CD4_Plagnol_activated.68662	0	.	44410008	44412415	0	1	2407	0
chr21	44410010	44410425	MCF7_Burge_Thompson.34105	0	.	44410010	44410425	0	1	415	0
chr21	44410050	44412398	B_Cells_Pritchard.3371563	0	+	44410050	44412398	0	1	2348	0
chr21	44410067	44411414	liver_polyA+.137361	0	.	44410067	44411414	0	1	1347	0
chr21	44410067	44412429	H9_polyA+.47869	0	.	44410067	44412429	0	1	2362	0
chr21	44410071	44410429	colon_Burge.39951	0	.	44410071	44410429	0	1	358	0
chr21	44410192	44412842	REMC_MyoepithelialBreast.96323	0	.	44410192	44412842	0	1	2650	0
chr21	44410225	44412407	MIP101.72855	0	.	44410225	44412407	0	1	2182	0
chr21	44410364	44411295	melanoma_Garraway_short_term_cultures.72889	0	.	44410364	44411295	0	1	931	0
chr21	44411325	44412765	K562.48138	0	.	44411325	44412765	0	1	1440	0
chr21	44415512	44427626	B_Cells_Pritchard.3366169	0	+	44415512	44427626	0	2	3255,7493	0,4621
chr21	44415609	44416072	prostate_normal.62779	0	.	44415609	44416072	0	1	463	0
chr21	44415704	44418803	REMC_LuminalBreast.103281	0	.	44415704	44418803	0	1	3099	0
chr21	44416602	44417786	H1_polyA+.121205	0	.	44416602	44417786	0	1	1184	0
chr21	44416831	44418634	prostate_normal.62780	0	.	44416831	44418634	0	1	1803	0
chr21	44417196	44418458	REMC_BreastStem.51673	0	.	44417196	44418458	0	1	1262	0
chr21	44417210	44418717	REMC_MyoepithelialBreast.96325	0	.	44417210	44418717	0	1	1507	0
chr21	44418959	44428367	REMC_LuminalBreast.103282	0	.	44418959	44428367	0	1	9408	0
chr21	44419076	44423670	B_Cells_Pritchard.3366171	0	-	44419076	44423670	0	1	4594	0
chr21	44419798	44420764	Rinn_00028854	0	+	44419798	44420764	0	2	48,775	0,191
chr21	44419799	44420764	ENST00000411956	0	+	44419799	44420764	0	2	47,774	0,191
chr21	44420057	44424255	prostate_carcinoma.105019	0	.	44420057	44424255	0	1	4198	0
chr21	44420146	44422521	REMC_MyoepithelialBreast.96327	0	.	44420146	44422521	0	1	2375	0
chr21	44420509	44422463	REMC_BreastStem.51674	0	.	44420509	44422463	0	1	1954	0
chr21	44421368	44421785	CD4_Plagnol_resting.66626	0	.	44421368	44421785	0	1	417	0
chr21	44422674	44423905	REMC_MyoepithelialBreast.96328	0	.	44422674	44423905	0	1	1231	0
chr21	44422917	44423535	H1_polyA+.121206	0	.	44422917	44423535	0	1	618	0
chr21	44423263	44424254	REMC_BreastStem.51675	0	.	44423263	44424254	0	1	991	0
chr21	44423804	44424230	brain_AmbionMAQC.47275	0	.	44423804	44424230	0	1	426	0
chr21	44424383	44428354	REMC_BreastStem.51676	0	.	44424383	44428354	0	1	3971	0
chr21	44424497	44427381	prostate_carcinoma.105020	0	.	44424497	44427381	0	1	2884	0
chr21	44424575	44427375	prostate_normal.62781	0	.	44424575	44427375	0	1	2800	0
chr21	44425501	44426967	H1_polyA+.121207	0	.	44425501	44426967	0	1	1466	0
chr21	44425961	44426959	REMC_MyoepithelialBreast.96330	0	.	44425961	44426959	0	1	998	0
chr21	44427070	44427689	H1_polyA+.121139	0	.	44427070	44427689	0	1	619	0
chr21	44427079	44427690	REMC_MyoepithelialBreast.96331	0	.	44427079	44427690	0	1	611	0
chr21	44427750	44428347	REMC_MyoepithelialBreast.96332	0	.	44427750	44428347	0	1	597	0
chr21	44428671	44432262	REMC_LuminalBreast.103291	0	.	44428671	44432262	0	1	3591	0
chr21	44428672	44429431	REMC_MyoepithelialBreast.96333	0	.	44428672	44429431	0	1	759	0
chr21	44428691	44429871	REMC_BreastStem.51677	0	.	44428691	44429871	0	1	1180	0
chr21	44429032	44429895	B_cells_Cheung.204043	0	.	44429032	44429895	0	1	863	0
chr21	44429039	44431621	prostate_carcinoma.105021	0	.	44429039	44431621	0	1	2582	0
chr21	44429040	44429570	H1_polyA+.121140	0	.	44429040	44429570	0	1	530	0
chr21	44429061	44431655	B_Cells_Pritchard.3366177	0	.	44429061	44431655	0	1	2594	0
chr21	44429270	44431604	prostate_normal.62782	0	.	44429270	44431604	0	1	2334	0
chr21	44429760	44430783	H1_polyA+.121141	0	.	44429760	44430783	0	1	1023	0
chr21	44429959	44431625	B_cells_Cheung.204044	0	.	44429959	44431625	0	1	1666	0
chr21	44430390	44431131	brain_AmbionMAQC.47278	0	.	44430390	44431131	0	1	741	0
chr21	44430913	44431640	H1_polyA+.121142	0	.	44430913	44431640	0	1	727	0
chr21	44434253	44435466	REMC_LuminalBreast.103293	0	.	44434253	44435466	0	1	1213	0
chr21	44436352	44437236	prostate_carcinoma.105023	0	.	44436352	44437236	0	1	884	0
chr21	44437513	44439237	prostate_carcinoma.105024	0	.	44437513	44439237	0	1	1724	0
chr21	44437698	44438797	REMC_BreastStem.51678	0	.	44437698	44438797	0	1	1099	0
chr21	44438056	44439359	B_Cells_Pritchard.3366205	0	.	44438056	44439359	0	1	1303	0
chr21	44438059	44438824	CD4_Plagnol_resting.66628	0	.	44438059	44438824	0	1	765	0
chr21	44438067	44438555	CD4_Plagnol_activated.68674	0	.	44438067	44438555	0	1	488	0
chr21	44439623	44442379	B_Cells_Pritchard.3366207	0	.	44439623	44442379	0	1	2756	0
chr21	44440019	44441181	REMC_LuminalBreast.103294	0	.	44440019	44441181	0	1	1162	0
chr21	44440101	44442491	B_cells_Cheung.204049	0	.	44440101	44442491	0	1	2390	0
chr21	44441693	44442352	prostate_carcinoma.105025	0	.	44441693	44442352	0	1	659	0
chr21	44442534	44443463	REMC_LuminalBreast.103295	0	.	44442534	44443463	0	1	929	0
chr21	44443592	44448643	REMC_LuminalBreast.103296	0	.	44443592	44448643	0	1	5051	0
chr21	44443592	44451191	REMC_LuminalBreast.103297	0	+	44443592	44451191	0	2	3752,763	0,6836
chr21	44443651	44446333	MDAMB468_Thompson.25795	0	.	44443651	44446333	0	1	2682	0
chr21	44443707	44450095	B_Cells_Pritchard.3366353	0	-	44443707	44450095	0	3	1303,505,3962	0,1413,2426
chr21	44444595	44450095	B_Cells_Pritchard.3366351	0	+	44444595	44450095	0	2	1035,3975	0,1525
chr21	44444651	44449428	BT474_Burge_Thompson.37905	0	-	44444651	44449428	0	2	1617,2552	0,2225
chr21	44445599	44447007	Rinn_00028855	0	+	44445599	44447007	0	2	669,132	0,1276
chr21	44445600	44447007	ENST00000437557	0	+	44445600	44447007	0	2	668,131	0,1276
chr21	44445674	44446748	T47D_Burge_Thompson.30850	0	.	44445674	44446748	0	1	1074	0
chr21	44446082	44451134	K562.48142	0	+	44446082	44451134	0	2	1262,706	0,4346
chr21	44446082	44447634	K562.48143	0	.	44446082	44447634	0	1	1552	0
chr21	44446162	44448051	prostate_carcinoma.105027	0	.	44446162	44448051	0	1	1889	0
chr21	44446176	44447745	H1_polyA+.121143	0	.	44446176	44447745	0	1	1569	0
chr21	44446366	44447688	brain_AmbionMAQC.47285	0	.	44446366	44447688	0	1	1322	0
chr21	44446388	44447243	REMC_BreastStem.51679	0	.	44446388	44447243	0	1	855	0
chr21	44446570	44447660	MDAMB468_Thompson.25796	0	.	44446570	44447660	0	1	1090	0
chr21	44446862	44449048	T47D_Burge_Thompson.30851	0	.	44446862	44449048	0	1	2186	0
chr21	44446878	44448120	ZR751_Thompson.25361	0	.	44446878	44448120	0	1	1242	0
chr21	44446887	44448061	MCF7_Burge_Thompson.34072	0	.	44446887	44448061	0	1	1174	0
chr21	44448023	44448788	H1_polyA+.121144	0	.	44448023	44448788	0	1	765	0
chr21	44448176	44449003	MCF7_Burge_Thompson.34073	0	.	44448176	44449003	0	1	827	0
chr21	44448322	44449008	brain_AmbionMAQC.47284	0	.	44448322	44449008	0	1	686	0
chr21	44448741	44449383	CD4_Plagnol_resting.66629	0	.	44448741	44449383	0	1	642	0
chr21	44449090	44450102	brain_AmbionMAQC.47286	0	.	44449090	44450102	0	1	1012	0
chr21	44450278	44451158	BT474_Burge_Thompson.37907	0	.	44450278	44451158	0	1	880	0
chr21	44450322	44450954	brain_AmbionMAQC.47287	0	.	44450322	44450954	0	1	632	0
chr21	44450357	44451059	CD4_Plagnol_resting.66630	0	.	44450357	44451059	0	1	702	0
chr21	44450373	44450884	T47D_Burge_Thompson.30852	0	.	44450373	44450884	0	1	511	0
chr21	44450378	44450931	MDAMB468_Thompson.25798	0	.	44450378	44450931	0	1	553	0
chr21	44452259	44454396	Rinn_00029050	0	+	44452259	44454396	0	2	271,1618	0,519
chr21	44452676	44454429	REMC_LuminalBreast.103299	0	.	44452676	44454429	0	1	1753	0
chr21	44452760	44453826	brain_AmbionMAQC.47288	0	.	44452760	44453826	0	1	1066	0
chr21	44452820	44453877	REMC_BreastStem.51680	0	.	44452820	44453877	0	1	1057	0
chr21	44452828	44454343	MDAMB468_Thompson.25799	0	.	44452828	44454343	0	1	1515	0
chr21	44452886	44454142	melanoma_Garraway_short_term_cultures.72891	0	.	44452886	44454142	0	1	1256	0
chr21	44455737	44456773	B_cells_Cheung.204203	0	.	44455737	44456773	0	1	1036	0
chr21	44455873	44456475	B_Cells_Pritchard.3366403	0	-	44455873	44456475	0	2	326,194	0,408
chr21	44456101	44456569	brain_AmbionMAQC.47289	0	.	44456101	44456569	0	1	468	0
chr21	44457854	44458471	B_cells_Cheung.204205	0	.	44457854	44458471	0	1	617	0
chr21	44465122	44465892	REMC_LuminalBreast.103304	0	.	44465122	44465892	0	1	770	0
chr21	44486508	44486995	brain_AmbionMAQC.47293	0	.	44486508	44486995	0	1	487	0
chr21	44486596	44487432	CD4_Plagnol_resting.66657	0	.	44486596	44487432	0	1	836	0
chr21	44487366	44487801	lymph_node_Burge.52838	0	.	44487366	44487801	0	1	435	0
chr21	44487390	44488398	MDAMB468_Thompson.25803	0	.	44487390	44488398	0	1	1008	0
chr21	44487412	44487782	A549_Myers.92584	0	.	44487412	44487782	0	1	370	0
chr21	44487490	44488390	CD4_Snyder.78220	0	.	44487490	44488390	0	1	900	0
chr21	44487543	44488748	T47D_Burge_Thompson.30854	0	.	44487543	44488748	0	1	1205	0
chr21	44487552	44488814	MCF7_Burge_Thompson.34079	0	.	44487552	44488814	0	1	1262	0
chr21	44487565	44488425	BT474_Burge_Thompson.37908	0	.	44487565	44488425	0	1	860	0
chr21	44487649	44488707	CD4_Plagnol_resting.66658	0	.	44487649	44488707	0	1	1058	0
chr21	44528060	44528778	B_cells_Cheung.204074	0	.	44528060	44528778	0	1	718	0
chr21	44528162	44528714	B_Cells_Pritchard.3366291	0	.	44528162	44528714	0	1	552	0
chr21	44588926	44590492	B_Cells_Pritchard.3366523	0	+	44588926	44590492	0	1	1566	0
chr21	44589033	44589591	B_cells_Cheung.204128	0	.	44589033	44589591	0	1	558	0
chr21	44592210	44593525	B_cells_Cheung.204131	0	.	44592210	44593525	0	1	1315	0
chr21	44688729	44689826	BT20_Thompson.23339	0	.	44688729	44689826	0	1	1097	0
chr21	44688783	44690053	B_cells_Cheung.204155	0	.	44688783	44690053	0	1	1270	0
chr21	44688821	44689282	HeLa_polyA+_Chen.37763	0	.	44688821	44689282	0	1	461	0
chr21	44689394	44690091	H1_polyA+.121161	0	.	44689394	44690091	0	1	697	0
chr21	44693707	44694569	B_Cells_Pritchard.3366665	0	.	44693707	44694569	0	1	862	0
chr21	44704175	44705280	colon_Burge.39980	0	.	44704175	44705280	0	1	1105	0
chr21	44704181	44704764	lymph_node_Burge.52924	0	.	44704181	44704764	0	1	583	0
chr21	44704194	44705425	MB435_Burge.46183	0	.	44704194	44705425	0	1	1231	0
chr21	44704204	44704609	HME_Burge.42993	0	.	44704204	44704609	0	1	405	0
chr21	44704240	44707108	XR_078918	0	+	44704240	44707108	0	1	2868	0
chr21	44704241	44706578	HIT000024740	0	+	44704241	44706578	0	1	2337	0
chr21	44704439	44705067	CD4_Plagnol_resting.66677	0	.	44704439	44705067	0	1	628	0
chr21	44704444	44705271	BT474_Burge_Thompson.37922	0	.	44704444	44705271	0	1	827	0
chr21	44704542	44705559	CD4_Plagnol_activated.68692	0	.	44704542	44705559	0	1	1017	0
chr21	44704572	44705055	A549_Myers.92626	0	.	44704572	44705055	0	1	483	0
chr21	44704574	44705259	MeWo_Garraway.38502	0	.	44704574	44705259	0	1	685	0
chr21	44704618	44705405	kidney_Gilad.88627	0	.	44704618	44705405	0	1	787	0
chr21	44704659	44705261	MeI_Garraway.18588	0	.	44704659	44705261	0	1	602	0
chr21	44704678	44705000	HME_Burge.42994	0	.	44704678	44705000	0	1	322	0
chr21	44705106	44705951	A549_Myers.92627	0	.	44705106	44705951	0	1	845	0
chr21	44705324	44706484	CD4_Plagnol_resting.66678	0	.	44705324	44706484	0	1	1160	0
chr21	44705384	44707258	prostate_normal.62831	0	.	44705384	44707258	0	1	1874	0
chr21	44705386	44706554	colon_Burge.39981	0	.	44705386	44706554	0	1	1168	0
chr21	44705388	44706541	BT474_Burge_Thompson.37923	0	.	44705388	44706541	0	1	1153	0
chr21	44705569	44706577	kidney_Gilad.88629	0	.	44705569	44706577	0	1	1008	0
chr21	44705569	44706003	testes_Burge.55965	0	.	44705569	44706003	0	1	434	0
chr21	44705582	44706401	MeWo_Garraway.38503	0	.	44705582	44706401	0	1	819	0
chr21	44705588	44706008	adipose_Burge.40831	0	.	44705588	44706008	0	1	420	0
chr21	44705696	44707139	REMC_LuminalBreast.103321	0	.	44705696	44707139	0	1	1443	0
chr21	44705702	44706529	MDAMB231_Thompson.23318	0	.	44705702	44706529	0	1	827	0
chr21	44705727	44706712	HeLa_polyA+_Chen.37767	0	.	44705727	44706712	0	1	985	0
chr21	44705860	44706299	brain_AmbionMAQC.47318	0	.	44705860	44706299	0	1	439	0
chr21	44705885	44706484	T47D_Burge_Thompson.30864	0	.	44705885	44706484	0	1	599	0
chr21	44706061	44706548	testes_Burge.55967	0	.	44706061	44706548	0	1	487	0
chr21	44706070	44706447	A549_Myers.92628	0	.	44706070	44706447	0	1	377	0
chr21	44706090	44706494	NEC_from_H9.78717	0	.	44706090	44706494	0	1	404	0
chr21	44707079	44707725	B_cells_Cheung.204165	0	.	44707079	44707725	0	1	646	0
chr21	44707299	44707765	kidney_Gilad.88628	0	.	44707299	44707765	0	1	466	0
chr21	44708329	44709176	H1_polyA+.121166	0	.	44708329	44709176	0	1	847	0
chr21	44708412	44708960	prostate_normal.62832	0	.	44708412	44708960	0	1	548	0
chr21	44708939	44710006	MCF7_Burge_Thompson.34086	0	.	44708939	44710006	0	1	1067	0
chr21	44709245	44710183	H1_polyA+.121167	0	.	44709245	44710183	0	1	938	0
chr21	44709381	44709809	melanoma_Garraway_short_term_cultures.72923	0	.	44709381	44709809	0	1	428	0
chr21	44709690	44710899	H9_polyA+.47882	0	.	44709690	44710899	0	1	1209	0
chr21	44709962	44710809	melanoma_Garraway_short_term_cultures.72924	0	.	44709962	44710809	0	1	847	0
chr21	44710253	44710981	prostate_normal.62834	0	.	44710253	44710981	0	1	728	0
chr21	44711349	44711909	prostate_normal.62833	0	.	44711349	44711909	0	1	560	0
chr21	44719938	44720645	B_cells_Cheung.204170	0	.	44719938	44720645	0	1	707	0
chr21	44720036	44723425	prostate_normal.62836	0	+	44720036	44723425	0	2	124,1886	0,1503
chr21	44720226	44720620	kidney_Gilad.88636	0	.	44720226	44720620	0	1	394	0
chr21	44721107	44723461	H1_polyA+.121170	0	.	44721107	44723461	0	1	2354	0
chr21	44721330	44722753	B_Cells_Pritchard.3366721	0	.	44721330	44722753	0	1	1423	0
chr21	44721469	44723418	prostate_carcinoma.104965	0	.	44721469	44723418	0	1	1949	0
chr21	44721503	44722855	B_cells_Cheung.204171	0	.	44721503	44722855	0	1	1352	0
chr21	44721532	44722825	MCF7_Burge_Thompson.34088	0	.	44721532	44722825	0	1	1293	0
chr21	44721554	44722985	kidney_Gilad.88640	0	.	44721554	44722985	0	1	1431	0
chr21	44721564	44722943	melanoma_Garraway_short_term_cultures.72926	0	.	44721564	44722943	0	1	1379	0
chr21	44722137	44722760	NEC_from_H9.78719	0	.	44722137	44722760	0	1	623	0
chr21	44722823	44723430	liver_polyA+.137437	0	.	44722823	44723430	0	1	607	0
chr21	44729682	44730527	B_Cells_Pritchard.3366747	0	.	44729682	44730527	0	1	845	0
chr21	44729773	44730514	REMC_BreastStem.51707	0	.	44729773	44730514	0	1	741	0
chr21	44729854	44730533	prostate_carcinoma.104966	0	.	44729854	44730533	0	1	679	0
chr21	44729857	44731092	melanoma_Garraway_short_term_cultures.72929	0	.	44729857	44731092	0	1	1235	0
chr21	44729862	44731008	liver_polyA+.137440	0	.	44729862	44731008	0	1	1146	0
chr21	44729862	44731008	liver_polyA+.137439	0	-	44729862	44731008	0	2	541,482	0,664
chr21	44729881	44735450	HIT000014139	0	-	44729881	44735450	0	2	660,746	0,4823
chr21	44729889	44731082	A549_Myers.92629	0	-	44729889	44731082	0	2	677,27	0,1166
chr21	44729928	44730470	prostate_normal.62837	0	.	44729928	44730470	0	1	542	0
chr21	44730650	44731008	kidney_Gilad.88644	0	.	44730650	44731008	0	1	358	0
chr21	44733997	44735452	melanoma_Garraway_short_term_cultures.72931	0	.	44733997	44735452	0	1	1455	0
chr21	44734345	44735454	B_Cells_Pritchard.3366763	0	.	44734345	44735454	0	1	1109	0
chr21	44734364	44735445	H9_polyA+.47888	0	.	44734364	44735445	0	1	1081	0
chr21	44734369	44735555	BT20_Thompson.23357	0	.	44734369	44735555	0	1	1186	0
chr21	44734447	44735223	MeI_Garraway.18586	0	.	44734447	44735223	0	1	776	0
chr21	44734512	44735045	B_cells_Cheung.204173	0	.	44734512	44735045	0	1	533	0
chr21	44734945	44735443	REMC_BreastStem.51709	0	.	44734945	44735443	0	1	498	0
chr21	44737155	44738216	melanoma_Garraway_short_term_cultures.72933	0	.	44737155	44738216	0	1	1061	0
chr21	44738968	44739628	melanoma_Garraway_short_term_cultures.72934	0	.	44738968	44739628	0	1	660	0
chr21	44999155	45000024	MIP101.72996	0	.	44999155	45000024	0	1	869	0
chr21	45000194	45001644	H1_polyA+.121214	0	.	45000194	45001644	0	1	1450	0
chr21	45001006	45001887	MIP101.72998	0	.	45001006	45001887	0	1	881	0
chr21	45001036	45001471	BT474_Burge_Thompson.37954	0	.	45001036	45001471	0	1	435	0
chr21	45002257	45005787	BT474_Burge_Thompson.37957	0	-	45002257	45005787	0	2	2281,427	0,3103
chr21	45003117	45003664	H1_polyA+.121215	0	.	45003117	45003664	0	1	547	0
chr21	45004656	45005743	H1_polyA+.121216	0	.	45004656	45005743	0	1	1087	0
chr21	45005367	45005719	B_cells_Cheung.204185	0	.	45005367	45005719	0	1	352	0
chr21	45005887	45009979	BT474_Burge_Thompson.37958	0	-	45005887	45009979	0	2	1219,28	0,4064
chr21	45006591	45008136	H1_polyA+.121217	0	.	45006591	45008136	0	1	1545	0
chr21	45007246	45008638	BT474_Burge_Thompson.37959	0	.	45007246	45008638	0	1	1392	0
chr21	45010421	45011431	H1_polyA+.121218	0	.	45010421	45011431	0	1	1010	0
chr21	45010798	45011546	HepG2_Caltech_ENCODE.40663	0	.	45010798	45011546	0	1	748	0
chr21	45067137	45068013	REMC_MyoepithelialBreast.96547	0	.	45067137	45068013	0	1	876	0
chr21	45070208	45076926	REMC_LuminalBreast.103334	0	.	45070208	45076926	0	1	6718	0
chr21	45071715	45072408	B_Cells_Pritchard.3367581	0	.	45071715	45072408	0	1	693	0
chr21	45072611	45074531	REMC_MyoepithelialBreast.96549	0	.	45072611	45074531	0	1	1920	0
chr21	45074968	45076464	REMC_MyoepithelialBreast.96550	0	.	45074968	45076464	0	1	1496	0
chr21	45077178	45080170	REMC_LuminalBreast.103335	0	.	45077178	45080170	0	1	2992	0
chr21	45077187	45080111	REMC_MyoepithelialBreast.96551	0	.	45077187	45080111	0	1	2924	0
chr21	45078056	45080339	prostate_carcinoma.104997	0	.	45078056	45080339	0	1	2283	0
chr21	45078394	45079150	prostate_normal.62856	0	.	45078394	45079150	0	1	756	0
chr21	45079728	45080330	prostate_normal.62858	0	.	45079728	45080330	0	1	602	0
chr21	45079747	45080313	H9_polyA+.47911	0	.	45079747	45080313	0	1	566	0
chr21	45080786	45082483	prostate_carcinoma.105116	0	.	45080786	45082483	0	1	1697	0
chr21	45080786	45093317	prostate_carcinoma.105117	0	+	45080786	45093317	0	2	623,235	0,12296
chr21	45081998	45082415	A549_Myers.92672	0	.	45081998	45082415	0	1	417	0
chr21	45082208	45083627	prostate_normal.62860	0	.	45082208	45083627	0	1	1419	0
chr21	45082433	45088821	REMC_LuminalBreast.103442	0	.	45082433	45088821	0	1	6388	0
chr21	45082630	45084009	prostate_carcinoma.105118	0	.	45082630	45084009	0	1	1379	0
chr21	45082805	45083108	B_Cells_Pritchard.3367617	0	.	45082805	45083108	0	1	303	0
chr21	45084195	45086530	REMC_MyoepithelialBreast.96553	0	.	45084195	45086530	0	1	2335	0
chr21	45084786	45085821	prostate_carcinoma.105120	0	.	45084786	45085821	0	1	1035	0
chr21	45084841	45085357	prostate_normal.62861	0	.	45084841	45085357	0	1	516	0
chr21	45084892	45085884	H1_polyA+.121238	0	.	45084892	45085884	0	1	992	0
chr21	45085162	45085771	B_Cells_Pritchard.3367629	0	.	45085162	45085771	0	1	609	0
chr21	45085407	45085821	prostate_normal.62862	0	.	45085407	45085821	0	1	414	0
chr21	45089542	45090226	REMC_MyoepithelialBreast.96556	0	.	45089542	45090226	0	1	684	0
chr21	45089808	45090517	A549_Myers.92673	0	.	45089808	45090517	0	1	709	0
chr21	45090323	45090654	B_Cells_Pritchard.3367647	0	.	45090323	45090654	0	1	331	0
chr21	45090353	45092830	REMC_MyoepithelialBreast.96557	0	.	45090353	45092830	0	1	2477	0
chr21	45090783	45092050	B_Cells_Pritchard.3367649	0	.	45090783	45092050	0	1	1267	0
chr21	45091103	45092327	B_cells_Cheung.204195	0	.	45091103	45092327	0	1	1224	0
chr21	45091500	45092030	prostate_carcinoma.105121	0	.	45091500	45092030	0	1	530	0
chr21	45119272	45120098	T47D_Burge_Thompson.30883	0	.	45119272	45120098	0	1	826	0
chr21	45119362	45119869	H9_polyA+.47915	0	.	45119362	45119869	0	1	507	0
chr21	45120728	45124967	REMC_MyoepithelialBreast.96417	0	.	45120728	45124967	0	1	4239	0
chr21	45125243	45126391	B_cells_Cheung.204198	0	.	45125243	45126391	0	1	1148	0
chr21	45176494	45176888	A549_Myers.92711	0	.	45176494	45176888	0	1	394	0
chr21	45222356	45222770	H1_rRNA-depleted_UCSD_REMC.91325	0	.	45222356	45222770	0	1	414	0
chr21	45222386	45222768	CD4_Plagnol_resting.66699	0	.	45222386	45222768	0	1	382	0
chr21	45222406	45222732	liver_polyA+.137462	0	.	45222406	45222732	0	1	326	0
chr21	45222905	45224154	B_cells_Cheung.204219	0	.	45222905	45224154	0	1	1249	0
chr21	45222914	45223585	CD4_Plagnol_activated.68750	0	.	45222914	45223585	0	1	671	0
chr21	45222923	45223570	BT474_Burge_Thompson.37979	0	.	45222923	45223570	0	1	647	0
chr21	45223006	45223317	colon_Burge.40016	0	.	45223006	45223317	0	1	311	0
chr21	45223007	45223579	H9_polyA+.47923	0	.	45223007	45223579	0	1	572	0
chr21	45223030	45223586	MDAMB468_Thompson.25863	0	.	45223030	45223586	0	1	556	0
chr21	45223036	45223710	CD4_Plagnol_resting.66700	0	.	45223036	45223710	0	1	674	0
chr21	45223053	45223589	Rinn_00029180	0	-	45223053	45223589	0	2	53,418	0,118
chr21	45223078	45223561	Rinn_00029181	0	-	45223078	45223561	0	2	17,390	0,93
chr21	45223087	45223726	prostate_carcinoma.105034	0	.	45223087	45223726	0	1	639	0
chr21	45223101	45223572	MCF7_Burge_Thompson.34122	0	.	45223101	45223572	0	1	471	0
chr21	45223113	45223608	brain_AmbionMAQC.47351	0	.	45223113	45223608	0	1	495	0
chr21	45223122	45223601	REMC_MyoepithelialBreast.96447	0	.	45223122	45223601	0	1	479	0
chr21	45223138	45223557	ZR751_Thompson.25396	0	.	45223138	45223557	0	1	419	0
chr21	45223140	45223558	T47D_Burge_Thompson.30893	0	.	45223140	45223558	0	1	418	0
chr21	45223143	45223557	BT20_Thompson.23374	0	.	45223143	45223557	0	1	414	0
chr21	45223144	45223584	HeLa_polyA+_Chen.37812	0	.	45223144	45223584	0	1	440	0
chr21	45223145	45223585	MDAMB231_Thompson.23339	0	.	45223145	45223585	0	1	440	0
chr21	45223146	45223594	melanoma_Garraway_short_term_cultures.72974	0	.	45223146	45223594	0	1	448	0
chr21	45223148	45223591	REMC_LuminalBreast.103373	0	.	45223148	45223591	0	1	443	0
chr21	45223156	45223543	MCF10A_Thompson.22589	0	.	45223156	45223543	0	1	387	0
chr21	45223165	45223654	K562.48241	0	.	45223165	45223654	0	1	489	0
chr21	45223167	45223585	MeWo_Garraway.38514	0	.	45223167	45223585	0	1	418	0
chr21	45224673	45225213	REMC_MyoepithelialBreast.96448	0	.	45224673	45225213	0	1	540	0
chr21	45230129	45230950	REMC_MyoepithelialBreast.96449	0	.	45230129	45230950	0	1	821	0
chr21	45231533	45232220	REMC_MyoepithelialBreast.96450	0	.	45231533	45232220	0	1	687	0
chr21	45232411	45232808	A549_Myers.92737	0	.	45232411	45232808	0	1	397	0
chr21	45232695	45234099	REMC_MyoepithelialBreast.96451	0	.	45232695	45234099	0	1	1404	0
chr21	45234206	45238412	ENST00000439088	0	-	45234206	45238412	0	2	1969,166	0,4040
chr21	45234206	45238429	NR_033840	0	-	45234206	45238429	0	2	1972,183	0,4040
chr21	45234206	45238429	ENST00000434081	0	-	45234206	45238429	0	2	1972,183	0,4040
chr21	45234207	45238429	Rinn_00028762	0	-	45234207	45238429	0	2	1971,184	0,4038
chr21	45234270	45249666	HeLa_polyA+_Chen.37849	0	-	45234270	45249666	0	3	9729,34,880	0,10136,14516
chr21	45234523	45238122	REMC_MyoepithelialBreast.96452	0	.	45234523	45238122	0	1	3599	0
chr21	45234921	45239392	pHIT000095424	0	-	45234921	45239392	0	2	237,69	0,4402
chr21	45234921	45263047	pHIT000122051	0	-	45234921	45263047	0	2	237,102	0,28024
chr21	45234921	45264228	pHIT000122052	0	-	45234921	45264228	0	4	237,82,102,101	0,10587,28024,29206
chr21	45238228	45242194	REMC_MyoepithelialBreast.96453	0	.	45238228	45242194	0	1	3966	0
chr21	45238693	45239528	HIT000087347	0	-	45238693	45239528	0	1	835	0
chr21	45238720	45240067	HeLa_polyA-_Chen.19735	0	.	45238720	45240067	0	1	1347	0
chr21	45239995	45240523	A549_Myers.92739	0	.	45239995	45240523	0	1	528	0
chr21	45240135	45241023	HeLa_polyA-_Chen.19734	0	.	45240135	45241023	0	1	888	0
chr21	45241090	45242401	HeLa_polyA-_Chen.19736	0	.	45241090	45242401	0	1	1311	0
chr21	45242343	45249932	REMC_MyoepithelialBreast.96454	0	-	45242343	45249932	0	2	1656,1146	0,6443
chr21	45242507	45248920	HeLa_polyA-_Chen.19737	0	-	45242507	45248920	0	2	1492,134	0,6279
chr21	45243555	45249070	Rinn_00028763	0	-	45243555	45249070	0	2	444,285	0,5230
chr21	45244766	45246311	BT20_Thompson.23375	0	.	45244766	45246311	0	1	1545	0
chr21	45244812	45246247	prostate_carcinoma.105040	0	.	45244812	45246247	0	1	1435	0
chr21	45245251	45246227	A549_Myers.92740	0	.	45245251	45246227	0	1	976	0
chr21	45247114	45249726	BT20_Thompson.23376	0	.	45247114	45249726	0	1	2612	0
chr21	45247472	45248192	prostate_carcinoma.105041	0	.	45247472	45248192	0	1	720	0
chr21	45247976	45249792	REMC_LuminalBreast.103374	0	.	45247976	45249792	0	1	1816	0
chr21	45248290	45249603	prostate_carcinoma.105042	0	.	45248290	45249603	0	1	1313	0
chr21	45248325	45249932	REMC_MyoepithelialBreast.96455	0	.	45248325	45249932	0	1	1607	0
chr21	45248768	45249529	prostate_normal.62891	0	.	45248768	45249529	0	1	761	0
chr21	45255451	45256621	REMC_MyoepithelialBreast.96458	0	.	45255451	45256621	0	1	1170	0
chr21	45261005	45261323	HeLa_polyA+_Chen.37818	0	.	45261005	45261323	0	1	318	0
chr21	45262790	45263153	A549_Myers.92742	0	.	45262790	45263153	0	1	363	0
chr21	45265430	45265786	HeLa_polyA+_Chen.37820	0	.	45265430	45265786	0	1	356	0
chr21	45265929	45266377	HeLa_polyA+_Chen.37821	0	.	45265929	45266377	0	1	448	0
chr21	45285769	45287257	HeLa_polyA+_Chen.37824	0	.	45285769	45287257	0	1	1488	0
chr21	45285832	45287023	HeLa_polyA-_Chen.19738	0	.	45285832	45287023	0	1	1191	0
chr21	45286644	45286964	B_Cells_Pritchard.3368081	0	.	45286644	45286964	0	1	320	0
chr21	45286659	45286967	prostate_carcinoma.105043	0	.	45286659	45286967	0	1	308	0
chr21	45294438	45295147	HeLa_polyA+_Chen.37827	0	.	45294438	45295147	0	1	709	0
chr21	45300145	45302817	HeLa_polyA+_Chen.38168	0	-	45300145	45302817	0	2	436,297	0,2375
chr21	45303510	45303857	B_cells_Cheung.204222	0	.	45303510	45303857	0	1	347	0
chr21	45304187	45307157	HeLa_polyA+_Chen.38170	0	.	45304187	45307157	0	1	2970	0
chr21	45312746	45315172	H1_polyA+.121257	0	.	45312746	45315172	0	1	2426	0
chr21	45312970	45313630	B_cells_Cheung.204221	0	.	45312970	45313630	0	1	660	0
chr21	45314029	45314466	B_cells_Cheung.204225	0	.	45314029	45314466	0	1	437	0
chr21	45314077	45314686	prostate_carcinoma.105047	0	.	45314077	45314686	0	1	609	0
chr21	45314281	45314728	prostate_normal.62893	0	.	45314281	45314728	0	1	447	0
chr21	45315270	45317594	prostate_normal.62895	0	.	45315270	45317594	0	1	2324	0
chr21	45315271	45317717	K562.48242	0	.	45315271	45317717	0	1	2446	0
chr21	45315280	45317554	HIT000031873	0	-	45315280	45317554	0	1	2274	0
chr21	45315298	45317554	NR_027292	0	-	45315298	45317554	0	1	2256	0
chr21	45315463	45317039	MCF10A_Thompson.22591	0	-	45315463	45317039	0	2	1203,286	0,1290
chr21	45315569	45316742	REMC_LuminalBreast.103375	0	.	45315569	45316742	0	1	1173	0
chr21	45315959	45316644	CD4_Plagnol_activated.68765	0	.	45315959	45316644	0	1	685	0
chr21	45316284	45317505	brain_AmbionMAQC.47352	0	.	45316284	45317505	0	1	1221	0
chr21	45490195	45491548	B_Cells_Pritchard.3368715	0	.	45490195	45491548	0	1	1353	0
chr21	45492323	45493756	B_Cells_Pritchard.3368721	0	.	45492323	45493756	0	1	1433	0
chr21	45500577	45500941	A549_Myers.92772	0	.	45500577	45500941	0	1	364	0
chr21	45504140	45505879	prostate_carcinoma.105080	0	.	45504140	45505879	0	1	1739	0
chr21	45504211	45505838	MIP101.72983	0	.	45504211	45505838	0	1	1627	0
chr21	45504270	45505715	CD4_Plagnol_activated.68792	0	.	45504270	45505715	0	1	1445	0
chr21	45504766	45505879	brain_AmbionMAQC.47370	0	.	45504766	45505879	0	1	1113	0
chr21	45506079	45507201	REMC_BreastStem.51725	0	.	45506079	45507201	0	1	1122	0
chr21	45506112	45507177	B_Cells_Pritchard.3368765	0	.	45506112	45507177	0	1	1065	0
chr21	45506323	45507175	prostate_normal.62919	0	.	45506323	45507175	0	1	852	0
chr21	45535546	45536103	testes_Burge.56038	0	.	45535546	45536103	0	1	557	0
chr21	45535943	45541722	ZR751_Thompson.25405	0	.	45535943	45541722	0	1	5779	0
chr21	45535980	45536333	colon_Burge.40028	0	.	45535980	45536333	0	1	353	0
chr21	45536711	45537837	REMC_BreastStem.51728	0	.	45536711	45537837	0	1	1126	0
chr21	45536827	45537188	MB435_Burge.46285	0	.	45536827	45537188	0	1	361	0
chr21	45536982	45538181	lymph_node_Burge.53001	0	.	45536982	45538181	0	1	1199	0
chr21	45537061	45537863	H1_rRNA-depleted_UCSD_REMC.91354	0	.	45537061	45537863	0	1	802	0
chr21	45537251	45540786	MB435_Burge.46287	0	.	45537251	45540786	0	1	3535	0
chr21	45537379	45544826	Rinn_00029251	0	+	45537379	45544826	0	2	486,97	0,7350
chr21	45537502	45538301	testes_Burge.56040	0	.	45537502	45538301	0	1	799	0
chr21	45537626	45541697	Rinn_00028859	0	+	45537626	45541697	0	2	239,1154	0,2917
chr21	45537627	45541697	ENST00000433465	0	+	45537627	45541697	0	2	238,1153	0,2917
chr21	45538153	45539729	XR_040463	0	-	45538153	45539729	0	2	832,170	0,1406
chr21	45538153	45541697	XR_040464	0	-	45538153	45541697	0	1	3544	0
chr21	45538279	45541078	REMC_MyoepithelialBreast.96492	0	.	45538279	45541078	0	1	2799	0
chr21	45538284	45541692	MDAMB468_Thompson.25868	0	.	45538284	45541692	0	1	3408	0
chr21	45538306	45538625	lymph_node_Burge.53000	0	.	45538306	45538625	0	1	319	0
chr21	45538393	45540940	HIT000079476	0	-	45538393	45540940	0	2	722,456	0,2091
chr21	45538425	45541798	melanoma_Garraway_short_term_cultures.72993	0	.	45538425	45541798	0	1	3373	0
chr21	45538535	45539076	H1_rRNA-depleted_UCSD_REMC.91355	0	.	45538535	45539076	0	1	541	0
chr21	45538630	45539031	IMR90_UCSD_REMC.51790	0	-	45538630	45539031	0	1	401	0
chr21	45538933	45539681	colon_Burge.40030	0	.	45538933	45539681	0	1	748	0
chr21	45538956	45539696	HME_Burge.43040	0	.	45538956	45539696	0	1	740	0
chr21	45544438	45544818	A549_Myers.92780	0	.	45544438	45544818	0	1	380	0
chr21	45545411	45545984	CD4_Snyder.78303	0	.	45545411	45545984	0	1	573	0
chr21	45546423	45547185	A549_Myers.92781	0	.	45546423	45547185	0	1	762	0
chr21	45550028	45550693	H1_polyA+.121289	0	.	45550028	45550693	0	1	665	0
chr21	45552202	45552903	HepG2_Caltech_ENCODE.40708	0	.	45552202	45552903	0	1	701	0
chr21	45552790	45553351	A549_Myers.92784	0	.	45552790	45553351	0	1	561	0
chr21	45554100	45554779	H1_polyA+.121290	0	.	45554100	45554779	0	1	679	0
chr21	45555463	45557672	H1_polyA+.121291	0	.	45555463	45557672	0	1	2209	0
chr21	45556061	45556555	prostate_carcinoma.105090	0	.	45556061	45556555	0	1	494	0
chr21	45556200	45557308	REMC_MyoepithelialBreast.96494	0	.	45556200	45557308	0	1	1108	0
chr21	45559552	45560494	HepG2_Caltech_ENCODE.40711	0	.	45559552	45560494	0	1	942	0
chr21	45559943	45562285	H1_polyA+.121292	0	.	45559943	45562285	0	1	2342	0
chr21	45560591	45561383	HepG2_Caltech_ENCODE.40712	0	.	45560591	45561383	0	1	792	0
chr21	45560669	45561648	prostate_carcinoma.105088	0	.	45560669	45561648	0	1	979	0
chr21	45562611	45563452	HepG2_Caltech_ENCODE.40713	0	.	45562611	45563452	0	1	841	0
chr21	45562826	45563661	A549_Myers.92785	0	.	45562826	45563661	0	1	835	0
chr21	45563198	45565484	prostate_carcinoma.105093	0	.	45563198	45565484	0	1	2286	0
chr21	45563354	45563945	brain_AmbionMAQC.47383	0	.	45563354	45563945	0	1	591	0
chr21	45563899	45564368	A549_Myers.92786	0	.	45563899	45564368	0	1	469	0
chr21	45564828	45565215	A549_Myers.92787	0	.	45564828	45565215	0	1	387	0
chr21	45565642	45566242	prostate_carcinoma.105094	0	.	45565642	45566242	0	1	600	0
chr21	45566427	45566792	prostate_carcinoma.105095	0	.	45566427	45566792	0	1	365	0
chr21	45566435	45568282	HepG2_Caltech_ENCODE.40714	0	.	45566435	45568282	0	1	1847	0
chr21	45566486	45567084	prostate_normal.62927	0	.	45566486	45567084	0	1	598	0
chr21	45566643	45567851	A549_Myers.92790	0	.	45566643	45567851	0	1	1208	0
chr21	45566847	45567591	prostate_carcinoma.105096	0	.	45566847	45567591	0	1	744	0
chr21	45567656	45570374	prostate_carcinoma.105097	0	.	45567656	45570374	0	1	2718	0
chr21	45568103	45568753	A549_Myers.92792	0	.	45568103	45568753	0	1	650	0
chr21	45568223	45569077	prostate_normal.62928	0	.	45568223	45569077	0	1	854	0
chr21	45568630	45569034	MB435_Burge.46292	0	.	45568630	45569034	0	1	404	0
chr21	45568803	45569906	A549_Myers.92793	0	.	45568803	45569906	0	1	1103	0
chr21	45569203	45569903	prostate_normal.62929	0	.	45569203	45569903	0	1	700	0
chr21	45569211	45569753	HeLa_polyA+_Chen.37847	0	.	45569211	45569753	0	1	542	0
chr21	45569259	45572676	HepG2_Caltech_ENCODE.40715	0	.	45569259	45572676	0	1	3417	0
chr21	45569359	45569812	brain_AmbionMAQC.47384	0	.	45569359	45569812	0	1	453	0
chr21	45569514	45569853	MB435_Burge.46291	0	.	45569514	45569853	0	1	339	0
chr21	45569979	45570432	prostate_normal.62930	0	.	45569979	45570432	0	1	453	0
chr21	45570033	45570457	A549_Myers.92794	0	.	45570033	45570457	0	1	424	0
chr21	45570446	45575925	prostate_carcinoma.105098	0	.	45570446	45575925	0	1	5479	0
chr21	45570539	45571962	prostate_normal.62931	0	.	45570539	45571962	0	1	1423	0
chr21	45570853	45571939	H1_polyA+.121293	0	.	45570853	45571939	0	1	1086	0
chr21	45570869	45571503	brain_AmbionMAQC.47385	0	.	45570869	45571503	0	1	634	0
chr21	45571433	45571842	A549_Myers.92795	0	.	45571433	45571842	0	1	409	0
chr21	45571592	45572601	MIP101.72960	0	.	45571592	45572601	0	1	1009	0
chr21	45571936	45572260	A549_Myers.92796	0	.	45571936	45572260	0	1	324	0
chr21	45572026	45572654	prostate_normal.62932	0	.	45572026	45572654	0	1	628	0
chr21	45572745	45574355	A549_Myers.92798	0	.	45572745	45574355	0	1	1610	0
chr21	45572760	45574415	prostate_normal.62933	0	.	45572760	45574415	0	1	1655	0
chr21	45572775	45574940	HepG2_Caltech_ENCODE.40716	0	.	45572775	45574940	0	1	2165	0
chr21	45573076	45573903	MCF7_Burge_Thompson.34142	0	.	45573076	45573903	0	1	827	0
chr21	45573153	45574023	MIP101.72961	0	.	45573153	45574023	0	1	870	0
chr21	45573924	45574939	H1_polyA+.121294	0	.	45573924	45574939	0	1	1015	0
chr21	45574518	45575700	prostate_normal.62934	0	.	45574518	45575700	0	1	1182	0
chr21	45575081	45575828	HepG2_Caltech_ENCODE.40717	0	.	45575081	45575828	0	1	747	0
chr21	45576684	45577129	prostate_normal.62935	0	.	45576684	45577129	0	1	445	0
chr21	45582932	45586333	ENST00000416722	0	-	45582932	45586333	0	2	289,166	0,3235
chr21	45594248	45595046	A549_Myers.92801	0	.	45594248	45595046	0	1	798	0
chr21	45598082	45598444	prostate_carcinoma.105100	0	.	45598082	45598444	0	1	362	0
chr21	45601227	45601946	MIP101.72962	0	.	45601227	45601946	0	1	719	0
chr21	45602238	45603653	MIP101.72963	0	.	45602238	45603653	0	1	1415	0
chr21	45605217	45607706	MIP101.72965	0	.	45605217	45607706	0	1	2489	0
chr21	45608705	45610669	REMC_BreastStem.51731	0	.	45608705	45610669	0	1	1964	0
chr21	45608720	45610629	MCF10A_Thompson.22595	0	.	45608720	45610629	0	1	1909	0
chr21	45608723	45609580	MDAMB231_Thompson.23352	0	.	45608723	45609580	0	1	857	0
chr21	45608895	45609462	REMC_MyoepithelialBreast.96495	0	.	45608895	45609462	0	1	567	0
chr21	45609050	45609580	REMC_LuminalBreast.103409	0	.	45609050	45609580	0	1	530	0
chr21	45609785	45611484	REMC_MyoepithelialBreast.96496	0	.	45609785	45611484	0	1	1699	0
chr21	45610497	45611498	REMC_LuminalBreast.103410	0	.	45610497	45611498	0	1	1001	0
chr21	45610730	45611530	REMC_BreastStem.51735	0	.	45610730	45611530	0	1	800	0
chr21	45610784	45613572	MCF10A_Thompson.22596	0	.	45610784	45613572	0	1	2788	0
chr21	45610814	45612766	MDAMB231_Thompson.23354	0	.	45610814	45612766	0	1	1952	0
chr21	45611148	45612399	A549_Myers.92808	0	.	45611148	45612399	0	1	1251	0
chr21	45611655	45613393	REMC_BreastStem.51736	0	.	45611655	45613393	0	1	1738	0
chr21	45611657	45614098	REMC_LuminalBreast.103411	0	.	45611657	45614098	0	1	2441	0
chr21	45612169	45612796	prostate_normal.62937	0	.	45612169	45612796	0	1	627	0
chr21	45612543	45613566	REMC_MyoepithelialBreast.96497	0	.	45612543	45613566	0	1	1023	0
chr21	45612824	45613407	MDAMB231_Thompson.23356	0	.	45612824	45613407	0	1	583	0
chr21	45613623	45614361	REMC_MyoepithelialBreast.96498	0	.	45613623	45614361	0	1	738	0
chr21	45614295	45615671	REMC_BreastStem.51732	0	.	45614295	45615671	0	1	1376	0
chr21	45615227	45615670	REMC_MyoepithelialBreast.96500	0	.	45615227	45615670	0	1	443	0
chr21	45616132	45616683	K562.48263	0	.	45616132	45616683	0	1	551	0
chr21	45616304	45616672	A549_Myers.92811	0	.	45616304	45616672	0	1	368	0
chr21	45624911	45625227	A549_Myers.92813	0	.	45624911	45625227	0	1	316	0
chr21	45815539	45816472	B_Cells_Pritchard.3369411	0	.	45815539	45816472	0	1	933	0
chr21	45815963	45816453	B_cells_Cheung.204325	0	.	45815963	45816453	0	1	490	0
chr21	45818266	45821153	B_Cells_Pritchard.3369421	0	.	45818266	45821153	0	1	2887	0
chr21	45821253	45821935	B_Cells_Pritchard.3369423	0	.	45821253	45821935	0	1	682	0
chr21	45822042	45826216	B_cells_Cheung.204326	0	.	45822042	45826216	0	1	4174	0
chr21	45822062	45824733	B_Cells_Pritchard.3369425	0	+	45822062	45824733	0	2	1384,762	0,1909
chr21	45822062	45826141	B_Cells_Pritchard.3369427	0	-	45822062	45826141	0	1	4079	0
chr21	45826268	45826925	B_cells_Cheung.204327	0	.	45826268	45826925	0	1	657	0
chr21	45826396	45827298	B_Cells_Pritchard.3369429	0	-	45826396	45827298	0	1	902	0
chr21	45826983	45827403	B_cells_Cheung.204328	0	.	45826983	45827403	0	1	420	0
chr21	45835474	45836757	H1_polyA+.121331	0	.	45835474	45836757	0	1	1283	0
chr21	45835859	45836374	B_Cells_Pritchard.3369495	0	-	45835859	45836374	0	1	515	0
chr21	45837995	45846058	HIT000328420	0	-	45837995	45846058	0	4	55,945,351,337	0,2737,6519,7726
chr21	45840014	45841788	B_Cells_Pritchard.3369481	0	-	45840014	45841788	0	1	1774	0
chr21	45842043	45847380	K562.48274	0	.	45842043	45847380	0	1	5337	0
chr21	45842172	45845738	B_cells_Cheung.204331	0	.	45842172	45845738	0	1	3566	0
chr21	45842257	45847489	B_Cells_Pritchard.3369441	0	-	45842257	45847489	0	2	3382,1688	0,3544
chr21	45842268	45847399	H1_polyA+.121332	0	.	45842268	45847399	0	1	5131	0
chr21	45842336	45850347	B_Cells_Pritchard.3369443	0	+	45842336	45850347	0	2	4928,215	0,7796
chr21	45842354	45847476	HepG2_Caltech_ENCODE.40734	0	.	45842354	45847476	0	1	5122	0
chr21	45842427	45843136	prostate_carcinoma.105147	0	.	45842427	45843136	0	1	709	0
chr21	45842558	45843454	MB435_Burge.46312	0	.	45842558	45843454	0	1	896	0
chr21	45842562	45843056	H9_polyA+.47992	0	.	45842562	45843056	0	1	494	0
chr21	45842955	45844150	melanoma_Garraway_short_term_cultures.73016	0	.	45842955	45844150	0	1	1195	0
chr21	45842963	45844087	prostate_normal.62961	0	.	45842963	45844087	0	1	1124	0
chr21	45843506	45846322	H9_polyA+.47994	0	-	45843506	45846322	0	2	670,496	0,2320
chr21	45851587	45851895	K562.48275	0	.	45851587	45851895	0	1	308	0
chr21	45851979	45853427	H1_polyA+.121334	0	.	45851979	45853427	0	1	1448	0
chr21	45852103	45853406	B_cells_Cheung.204337	0	.	45852103	45853406	0	1	1303	0
chr21	45852577	45853379	K562.48276	0	.	45852577	45853379	0	1	802	0
chr21	45853020	45853354	brain_AmbionMAQC.47400	0	.	45853020	45853354	0	1	334	0
chr21	45855625	45857172	B_Cells_Pritchard.3369553	0	.	45855625	45857172	0	1	1547	0
chr21	45857972	45858588	CD4_Snyder.78325	0	.	45857972	45858588	0	1	616	0
chr21	45862766	45886574	pHIT000122081	0	-	45862766	45886574	0	3	182,1385,155	0,14713,23653
chr21	45873651	45886574	pHIT000036495	0	-	45873651	45886574	0	5	87,76,1385,157,155	0,2762,3828,11026,12768
chr21	45876526	45877589	B_Cells_Pritchard.3369627	0	.	45876526	45877589	0	1	1063	0
chr21	45877473	45886574	pHIT000095396	0	-	45877473	45886574	0	2	1391,148	0,8953
chr21	45879231	45880662	B_cells_Cheung.204342	0	.	45879231	45880662	0	1	1431	0
chr21	45880029	45881203	H1_polyA+.121335	0	.	45880029	45881203	0	1	1174	0
chr21	45880062	45881079	prostate_carcinoma.105152	0	.	45880062	45881079	0	1	1017	0
chr21	45880121	45880678	prostate_normal.62962	0	.	45880121	45880678	0	1	557	0
chr21	45880736	45881107	prostate_normal.62963	0	.	45880736	45881107	0	1	371	0
chr21	45880744	45881165	B_cells_Cheung.204343	0	.	45880744	45881165	0	1	421	0
chr21	45881270	45881730	B_cells_Cheung.204344	0	.	45881270	45881730	0	1	460	0
chr21	46214643	46215309	A549_Myers.92915	0	.	46214643	46215309	0	1	666	0
chr21	46217153	46219296	Rinn_00029064	0	+	46217153	46219296	0	2	365,862	0,1281
chr21	46217278	46218125	REMC_BreastStem.51762	0	.	46217278	46218125	0	1	847	0
chr21	46217282	46218081	prostate_carcinoma.105168	0	.	46217282	46218081	0	1	799	0
chr21	46217298	46218665	testes_Burge.56083	0	+	46217298	46218665	0	2	220,230	0,1137
chr21	46217426	46217854	A549_Myers.92917	0	.	46217426	46217854	0	1	428	0
chr21	46217785	46219287	REMC_MyoepithelialBreast.96535	0	.	46217785	46219287	0	1	1502	0
chr21	46217802	46219668	REMC_LuminalBreast.103433	0	.	46217802	46219668	0	1	1866	0
chr21	46218284	46219262	prostate_carcinoma.105169	0	.	46218284	46219262	0	1	978	0
chr21	46218350	46219292	B_Cells_Pritchard.3370883	0	.	46218350	46219292	0	1	942	0
chr21	46218478	46219257	prostate_normal.62967	0	.	46218478	46219257	0	1	779	0
chr21	46218484	46219411	H9_polyA+.48000	0	.	46218484	46219411	0	1	927	0
chr21	46218720	46219296	testes_Burge.56082	0	.	46218720	46219296	0	1	576	0
chr21	46220085	46222081	Rinn_00029187	0	-	46220085	46222081	0	2	1075,204	0,1792
chr21	46220163	46222046	REMC_BreastStem.51763	0	-	46220163	46222046	0	2	997,168	0,1715
chr21	46221021	46221967	prostate_carcinoma.105170	0	.	46221021	46221967	0	1	946	0
chr21	46221348	46222129	prostate_normal.62968	0	.	46221348	46222129	0	1	781	0
chr21	46223404	46224229	prostate_carcinoma.105171	0	.	46223404	46224229	0	1	825	0
chr21	46251427	46251779	A549_Myers.92918	0	.	46251427	46251779	0	1	352	0
chr21	46280728	46281500	prostate_normal.63037	0	.	46280728	46281500	0	1	772	0
chr21	46280934	46282124	prostate_carcinoma.105199	0	.	46280934	46282124	0	1	1190	0
chr21	46281392	46283633	Rinn_00028776	0	+	46281392	46283633	0	2	848,836	0,1405
chr21	46281393	46284149	ENST00000451618	0	+	46281393	46284149	0	2	847,1351	0,1405
chr21	46281393	46283633	HIT000304928	0	+	46281393	46283633	0	2	847,835	0,1405
chr21	46282802	46283837	prostate_carcinoma.105200	0	.	46282802	46283837	0	1	1035	0
chr21	46283227	46283957	HepG2_Caltech_ENCODE.40738	0	.	46283227	46283957	0	1	730	0
chr21	46286800	46291800	K562.48279	0	.	46286800	46291800	0	1	5000	0
chr21	46292495	46292916	K562.48281	0	.	46292495	46292916	0	1	421	0
chr21	46293036	46297337	K562.48282	0	.	46293036	46297337	0	1	4301	0
chr21	46293616	46298033	REMC_LuminalBreast.103438	0	.	46293616	46298033	0	1	4417	0
chr21	46294073	46296152	REMC_MyoepithelialBreast.96537	0	.	46294073	46296152	0	1	2079	0
chr21	46294233	46295008	H1_polyA+.121402	0	.	46294233	46295008	0	1	775	0
chr21	46294418	46295610	B_Cells_Pritchard.3371085	0	.	46294418	46295610	0	1	1192	0
chr21	46296722	46297766	A549_Myers.92929	0	+	46296722	46297766	0	2	210,289	0,755
chr21	46296936	46297447	Rinn_00028863	0	+	46296936	46297447	0	2	109,308	0,203
chr21	46296937	46297447	ENST00000429512	0	+	46296937	46297447	0	2	108,307	0,203
chr21	46298260	46299232	REMC_LuminalBreast.103439	0	.	46298260	46299232	0	1	972	0
chr21	46298317	46299188	REMC_MyoepithelialBreast.96538	0	.	46298317	46299188	0	1	871	0
chr21	46300856	46301909	Rinn_00028864	0	+	46300856	46301909	0	2	78,279	0,774
chr21	46313564	46314028	A549_Myers.92930	0	.	46313564	46314028	0	1	464	0
chr21	46329432	46329844	REMC_LuminalBreast.103440	0	.	46329432	46329844	0	1	412	0
chr21	46329897	46331312	REMC_LuminalBreast.103441	0	.	46329897	46331312	0	1	1415	0
chr21	46335482	46335966	H1_polyA+.121403	0	.	46335482	46335966	0	1	484	0
chr21	46401762	46402593	REMC_LuminalBreast.103463	0	.	46401762	46402593	0	1	831	0
chr21	46401767	46402904	B_cells_Cheung.204418	0	.	46401767	46402904	0	1	1137	0
chr21	46401768	46402883	MCF7_Burge_Thompson.34178	0	.	46401768	46402883	0	1	1115	0
chr21	46401784	46403267	B_Cells_Pritchard.3371459	0	.	46401784	46403267	0	1	1483	0
chr21	46401786	46402136	brain_AmbionMAQC.47656	0	.	46401786	46402136	0	1	350	0
chr21	46401825	46402965	melanoma_Garraway_short_term_cultures.73031	0	.	46401825	46402965	0	1	1140	0
chr21	46403432	46404217	REMC_LuminalBreast.103464	0	.	46403432	46404217	0	1	785	0
chr21	46403655	46404301	B_cells_Cheung.204419	0	.	46403655	46404301	0	1	646	0
chr21	46475530	46475999	H1_rRNA-depleted_UCSD_REMC.91460	0	.	46475530	46475999	0	1	469	0
chr21	46477001	46477802	melanoma_Garraway_short_term_cultures.73044	0	.	46477001	46477802	0	1	801	0
chr21	46543770	46544092	MB435_Burge.46406	0	.	46543770	46544092	0	1	322	0
chr21	46691684	46698093	K562.48319	0	.	46691684	46698093	0	1	6409	0
chr21	46693677	46698502	HIT000045763	0	+	46693677	46698502	0	1	4825	0
chr21	46693793	46698127	B_cells_Cheung.204442	0	.	46693793	46698127	0	1	4334	0
chr21	46693841	46698068	HeLa_polyA+_Chen.37855	0	.	46693841	46698068	0	1	4227	0
chr21	46695762	46698193	H1_polyA+.121900	0	.	46695762	46698193	0	1	2431	0
chr21	46695762	46698081	H9_polyA+.48052	0	.	46695762	46698081	0	1	2319	0
chr21	46695764	46698119	BT20_Thompson.23420	0	.	46695764	46698119	0	1	2355	0
chr21	46695768	46698070	MCF7_Burge_Thompson.34789	0	.	46695768	46698070	0	1	2302	0
chr21	46695791	46698082	T47D_Burge_Thompson.31032	0	.	46695791	46698082	0	1	2291	0
chr21	46695800	46698120	melanoma_Garraway_short_term_cultures.73081	0	.	46695800	46698120	0	1	2320	0
chr21	46695844	46697606	BT474_Burge_Thompson.38232	0	.	46695844	46697606	0	1	1762	0
chr21	46695875	46697545	A549_Myers.92973	0	.	46695875	46697545	0	1	1670	0
chr21	46695895	46698178	REMC_MyoepithelialBreast.96595	0	.	46695895	46698178	0	1	2283	0
chr21	46696466	46697504	brain_AmbionMAQC.47518	0	.	46696466	46697504	0	1	1038	0
chr21	46696816	46698096	CD4_Plagnol_resting.66821	0	.	46696816	46698096	0	1	1280	0
chr21	46697115	46698102	CD4_Plagnol_activated.68875	0	.	46697115	46698102	0	1	987	0
chr21	46697302	46698039	REMC_LuminalBreast.103508	0	.	46697302	46698039	0	1	737	0
chr21	46699292	46703032	HIT000047445	0	-	46699292	46703032	0	1	3740	0
chr21	46699327	46703021	ENST00000499524	0	-	46699327	46703021	0	2	932,597	0,3097
chr21	46816693	46819832	B_cells_Cheung.204489	0	.	46816693	46819832	0	1	3139	0
chr21	46818014	46819005	CD4_Plagnol_resting.66835	0	.	46818014	46819005	0	1	991	0
chr21	46818026	46818578	REMC_LuminalBreast.103535	0	.	46818026	46818578	0	1	552	0
chr21	46818079	46818722	CD4_Plagnol_activated.68961	0	.	46818079	46818722	0	1	643	0
chr21	46818088	46818985	REMC_BreastStem.51786	0	.	46818088	46818985	0	1	897	0
chr21	46820243	46828338	B_Cells_Pritchard.3371715	0	+	46820243	46828338	0	2	469,371	0,7724
chr21	46820735	46822057	REMC_LuminalBreast.103537	0	.	46820735	46822057	0	1	1322	0
chr21	46825460	46832059	REMC_LuminalBreast.103538	0	.	46825460	46832059	0	1	6599	0
chr21	46825924	46826863	brain_AmbionMAQC.47689	0	.	46825924	46826863	0	1	939	0
chr21	46825984	46828198	REMC_BreastStem.51787	0	.	46825984	46828198	0	1	2214	0
chr21	46826016	46828393	MCF7_Burge_Thompson.34801	0	.	46826016	46828393	0	1	2377	0
chr21	46826016	46827393	B_cells_Cheung.204491	0	.	46826016	46827393	0	1	1377	0
chr21	46826019	46828990	REMC_MyoepithelialBreast.96615	0	.	46826019	46828990	0	1	2971	0
chr21	46826021	46828913	CD4_Plagnol_activated.68888	0	.	46826021	46828913	0	1	2892	0
chr21	46826022	46827377	CD4_Plagnol_resting.66836	0	.	46826022	46827377	0	1	1355	0
chr21	46826047	46827172	HeLa_polyA+_Chen.37866	0	.	46826047	46827172	0	1	1125	0
chr21	46826572	46828940	melanoma_Garraway_short_term_cultures.73104	0	.	46826572	46828940	0	1	2368	0
chr21	46828319	46828928	REMC_BreastStem.51788	0	.	46828319	46828928	0	1	609	0
chr21	46832119	46837752	REMC_MyoepithelialBreast.96617	0	.	46832119	46837752	0	1	5633	0
chr21	46832172	46838342	REMC_LuminalBreast.103539	0	.	46832172	46838342	0	1	6170	0
chr21	46832887	46836134	REMC_BreastStem.51790	0	.	46832887	46836134	0	1	3247	0
chr21	46835170	46836836	melanoma_Garraway_short_term_cultures.73110	0	.	46835170	46836836	0	1	1666	0
chr21	46838918	46839882	MeWo_Garraway.38606	0	.	46838918	46839882	0	1	964	0
chr21	46840617	46841040	MB435_Burge.46440	0	.	46840617	46841040	0	1	423	0
chr21	46911429	46913068	CD4_Plagnol_resting.66877	0	.	46911429	46913068	0	1	1639	0
chr21	46911557	46919190	pHIT000095398	0	+	46911557	46919190	0	2	290,103	0,7530
chr21	46911677	46912428	MIP101.73017	0	.	46911677	46912428	0	1	751	0
chr21	46911736	46913111	H1_polyA+.121430	0	.	46911736	46913111	0	1	1375	0
chr21	46911736	46913083	MCF7_Burge_Thompson.34206	0	.	46911736	46913083	0	1	1347	0
chr21	46911752	46913080	B_cells_Cheung.204505	0	.	46911752	46913080	0	1	1328	0
chr21	46911767	46912903	BT474_Burge_Thompson.38015	0	.	46911767	46912903	0	1	1136	0
chr21	46911847	46912429	CD4_Plagnol_activated.68923	0	.	46911847	46912429	0	1	582	0
chr21	46911948	46913135	MDAMB468_Thompson.25921	0	.	46911948	46913135	0	1	1187	0
chr21	46911967	46913072	BT20_Thompson.23435	0	.	46911967	46913072	0	1	1105	0
chr21	46912061	46913072	MCF10A_Thompson.22620	0	.	46912061	46913072	0	1	1011	0
chr21	46912062	46913084	REMC_LuminalBreast.103543	0	.	46912062	46913084	0	1	1022	0
chr21	46914614	46915312	brain_AmbionMAQC.47498	0	.	46914614	46915312	0	1	698	0
chr21	46914858	46915250	B_Cells_Pritchard.3371905	0	.	46914858	46915250	0	1	392	0
chr22	14442156	14443236	ENST00000424770	0	+	14442156	14443236	0	2	160,426	0,654
chr22	14538797	14572995	ENST00000477443	0	-	14538797	14572995	0	8	592,91,136,114,112,148,111,90	0,3599,28013,28367,30234,30466,31883,34108
chr22	14551459	14552116	ENST00000414726	0	+	14551459	14552116	0	2	148,165	0,492
chr22	14573936	14576800	HIT000013474	0	+	14573936	14576800	0	1	2864	0
chr22	15462259	15462645	colon_Burge.40149	0	.	15462259	15462645	0	1	386	0
chr22	15509814	15510485	REMC_BreastStem.51802	0	.	15509814	15510485	0	1	671	0
chr22	15509865	15512049	REMC_MyoepithelialBreast.96643	0	.	15509865	15512049	0	1	2184	0
chr22	15509891	15510195	T47D_Burge_Thompson.30950	0	.	15509891	15510195	0	1	304	0
chr22	15510598	15511605	REMC_BreastStem.51803	0	.	15510598	15511605	0	1	1007	0
chr22	15527880	15531322	REMC_LuminalBreast.103598	0	.	15527880	15531322	0	1	3442	0
chr22	15528356	15528680	REMC_MyoepithelialBreast.96655	0	.	15528356	15528680	0	1	324	0
chr22	15531974	15534105	REMC_LuminalBreast.103600	0	.	15531974	15534105	0	1	2131	0
chr22	15532817	15533854	REMC_MyoepithelialBreast.96658	0	.	15532817	15533854	0	1	1037	0
chr22	15532847	15534070	REMC_BreastStem.51816	0	.	15532847	15534070	0	1	1223	0
chr22	15540603	15541091	REMC_LuminalBreast.103606	0	.	15540603	15541091	0	1	488	0
chr22	15540613	15541110	REMC_MyoepithelialBreast.96661	0	.	15540613	15541110	0	1	497	0
chr22	15540622	15541095	REMC_BreastStem.51819	0	.	15540622	15541095	0	1	473	0
chr22	15569621	15569967	REMC_LuminalBreast.103632	0	.	15569621	15569967	0	1	346	0
chr22	15571625	15571960	REMC_BreastStem.51833	0	.	15571625	15571960	0	1	335	0
chr22	15572650	15573335	REMC_LuminalBreast.103635	0	.	15572650	15573335	0	1	685	0
chr22	15572678	15573321	REMC_BreastStem.51834	0	.	15572678	15573321	0	1	643	0
chr22	15820518	15821493	prostate_carcinoma.105259	0	.	15820518	15821493	0	1	975	0
chr22	15897995	15920528	K562.48418	0	+	15897995	15920528	0	4	239,128,103,4074	0,7767,10218,18459
chr22	15898101	15917448	ENST00000414401	0	+	15898101	15917448	0	4	133,128,103,182	0,7661,10112,19165
chr22	15898101	15908316	pHIT000122153	0	+	15898101	15908316	0	3	133,86,103	0,9117,10112
chr22	15901226	15901994	REMC_LuminalBreast.103639	0	.	15901226	15901994	0	1	768	0
chr22	15901234	15901978	REMC_MyoepithelialBreast.96671	0	.	15901234	15901978	0	1	744	0
chr22	15902545	15913731	REMC_LuminalBreast.103642	0	+	15902545	15913731	0	2	3345,5518	0,5668
chr22	15903892	15913490	REMC_MyoepithelialBreast.96673	0	+	15903892	15913490	0	2	1998,5315	0,4283
chr22	15904352	15920490	B_Cells_Pritchard.3372857	0	-	15904352	15920490	0	4	1910,1909,3802,4912	0,2645,4978,11226
chr22	15905520	15920496	B_cells_Cheung.204519	0	+	15905520	15920496	0	3	370,103,2090	0,2693,12886
chr22	15905748	15920490	B_Cells_Pritchard.3372859	0	+	15905748	15920490	0	6	142,2536,302,1988,529,5422	0,2465,5150,5654,8787,9320
chr22	15905758	15920104	ZR751_Thompson.25461	0	+	15905758	15920104	0	3	132,103,3650	0,2455,10696
chr22	15906407	15920496	B_cells_Cheung.204518	0	.	15906407	15920496	0	1	14089	0
chr22	15907952	15911193	melanoma_Garraway_short_term_cultures.73124	0	.	15907952	15911193	0	1	3241	0
chr22	15908275	15910102	H1_polyA+.121433	0	.	15908275	15910102	0	1	1827	0
chr22	15908307	15920070	MeWo_Garraway.38667	0	+	15908307	15920070	0	2	9,3551	0,8212
chr22	15908992	15910060	prostate_normal.63121	0	.	15908992	15910060	0	1	1068	0
chr22	15909077	15909901	MB435_Burge.46463	0	.	15909077	15909901	0	1	824	0
chr22	15909195	15910916	T47D_Burge_Thompson.30959	0	.	15909195	15910916	0	1	1721	0
chr22	15909205	15910226	CD4_Plagnol_activated.68927	0	.	15909205	15910226	0	1	1021	0
chr22	15914483	15920367	melanoma_Garraway_short_term_cultures.73127	0	.	15914483	15920367	0	1	5884	0
chr22	15914483	15920407	REMC_LuminalBreast.103640	0	.	15914483	15920407	0	1	5924	0
chr22	15914540	15920481	REMC_MyoepithelialBreast.96674	0	.	15914540	15920481	0	1	5941	0
chr22	15914869	15920528	K562.48419	0	.	15914869	15920528	0	1	5659	0
chr22	15915008	15920053	prostate_normal.63176	0	.	15915008	15920053	0	1	5045	0
chr22	15915709	15920472	REMC_BreastStem.51838	0	.	15915709	15920472	0	1	4763	0
chr22	15915724	15921955	prostate_normal.63177	0	+	15915724	15921955	0	2	3726,471	0,5760
chr22	15915738	15918789	H1_polyA+.121437	0	.	15915738	15918789	0	1	3051	0
chr22	15916009	15920070	MeWo_Garraway.38668	0	.	15916009	15920070	0	1	4061	0
chr22	15916303	15920054	T47D_Burge_Thompson.30958	0	.	15916303	15920054	0	1	3751	0
chr22	15917169	15919737	MCF10A_Thompson.22632	0	.	15917169	15919737	0	1	2568	0
chr22	15917177	15918247	MB435_Burge.46489	0	.	15917177	15918247	0	1	1070	0
chr22	15917186	15920049	CD4_Plagnol_activated.68928	0	.	15917186	15920049	0	1	2863	0
chr22	15917298	15920054	MeI_Garraway.18657	0	.	15917298	15920054	0	1	2756	0
chr22	15917315	15920103	MDAMB468_Thompson.25932	0	.	15917315	15920103	0	1	2788	0
chr22	15917666	15918859	A549_Myers.93028	0	.	15917666	15918859	0	1	1193	0
chr22	15920692	15929853	B_Cells_Pritchard.3372791	0	-	15920692	15929853	0	4	2542,1119,1476,3005	0,3420,4631,6156
chr22	15920692	15930316	B_Cells_Pritchard.3372793	0	+	15920692	15930316	0	4	2929,1495,1653,1660	0,4631,6300,7964
chr22	15921534	15923124	A549_Myers.93030	0	.	15921534	15923124	0	2	409,1096	0,494
chr22	15923952	15936870	REMC_LuminalBreast.103645	0	.	15923952	15936870	0	1	12918	0
chr22	15924076	15936053	REMC_MyoepithelialBreast.96679	0	.	15924076	15936053	0	1	11977	0
chr22	15924126	15925258	B_cells_Cheung.204521	0	.	15924126	15925258	0	1	1132	0
chr22	15924142	15925232	melanoma_Garraway_short_term_cultures.73130	0	.	15924142	15925232	0	1	1090	0
chr22	15924153	15925244	K562.48426	0	.	15924153	15925244	0	1	1091	0
chr22	15924650	15925171	T47D_Burge_Thompson.30964	0	.	15924650	15925171	0	1	521	0
chr22	15924667	15927040	HIT000044366	0	+	15924667	15927040	0	1	2373	0
chr22	15924744	15925219	MCF10A_Thompson.22634	0	.	15924744	15925219	0	1	475	0
chr22	15925322	15929837	B_cells_Cheung.204522	0	.	15925322	15929837	0	1	4515	0
chr22	15925331	15926783	prostate_carcinoma.105646	0	.	15925331	15926783	0	1	1452	0
chr22	15925341	15926923	melanoma_Garraway_short_term_cultures.73131	0	.	15925341	15926923	0	1	1582	0
chr22	15925352	15926689	MCF10A_Thompson.22635	0	.	15925352	15926689	0	1	1337	0
chr22	15925353	15926338	REMC_BreastStem.51843	0	.	15925353	15926338	0	1	985	0
chr22	15925482	15926712	K562.48427	0	.	15925482	15926712	0	1	1230	0
chr22	15925554	15926693	MeWo_Garraway.38629	0	.	15925554	15926693	0	1	1139	0
chr22	15926758	15927791	REMC_BreastStem.51844	0	.	15926758	15927791	0	1	1033	0
chr22	15926856	15927491	brain_AmbionMAQC.47532	0	.	15926856	15927491	0	1	635	0
chr22	15927026	15927454	melanoma_Garraway_short_term_cultures.73132	0	.	15927026	15927454	0	1	428	0
chr22	15927069	15927457	A549_Myers.93058	0	.	15927069	15927457	0	1	388	0
chr22	15927661	15928474	melanoma_Garraway_short_term_cultures.73133	0	.	15927661	15928474	0	1	813	0
chr22	15927875	15928364	CD4_Plagnol_resting.66880	0	.	15927875	15928364	0	1	489	0
chr22	15927880	15928536	REMC_BreastStem.51845	0	.	15927880	15928536	0	1	656	0
chr22	15927909	15928395	K562.48428	0	.	15927909	15928395	0	1	486	0
chr22	15927911	15928559	brain_AmbionMAQC.47533	0	.	15927911	15928559	0	1	648	0
chr22	15927938	15928436	prostate_normal.63187	0	.	15927938	15928436	0	1	498	0
chr22	15932161	15934695	REMC_BreastStem.51848	0	.	15932161	15934695	0	1	2534	0
chr22	15932238	15933205	B_cells_Cheung.204525	0	.	15932238	15933205	0	1	967	0
chr22	15934609	15935272	prostate_carcinoma.105653	0	.	15934609	15935272	0	1	663	0
chr22	15936296	15940265	REMC_MyoepithelialBreast.96680	0	.	15936296	15940265	0	1	3969	0
chr22	15936943	15940288	REMC_LuminalBreast.103646	0	.	15936943	15940288	0	1	3345	0
chr22	15939364	15942809	B_cells_Cheung.204535	0	.	15939364	15942809	0	1	3445	0
chr22	15940039	15942790	melanoma_Garraway_short_term_cultures.73141	0	.	15940039	15942790	0	1	2751	0
chr22	16028323	16029370	H1_polyA+.121530	0	.	16028323	16029370	0	1	1047	0
chr22	16028338	16029253	B_cells_Cheung.204554	0	.	16028338	16029253	0	1	915	0
chr22	16028346	16028850	B_Cells_Pritchard.3374985	0	+	16028346	16028850	0	1	504	0
chr22	16029490	16030938	H1_polyA+.121531	0	.	16029490	16030938	0	1	1448	0
chr22	16029527	16030347	B_cells_Cheung.204555	0	.	16029527	16030347	0	1	820	0
chr22	16031775	16033719	B_Cells_Pritchard.3374995	0	+	16031775	16033719	0	1	1944	0
chr22	16031776	16032598	H1_polyA+.121532	0	.	16031776	16032598	0	1	822	0
chr22	16031987	16033173	B_cells_Cheung.204558	0	.	16031987	16033173	0	1	1186	0
chr22	16032720	16034725	H1_polyA+.121533	0	.	16032720	16034725	0	1	2005	0
chr22	16034265	16037064	B_Cells_Pritchard.3375005	0	-	16034265	16037064	0	2	433,853	0,1946
chr22	16036055	16037097	H1_polyA+.121535	0	.	16036055	16037097	0	1	1042	0
chr22	16036741	16037140	B_cells_Cheung.204565	0	.	16036741	16037140	0	1	399	0
chr22	16120941	16122671	H1_polyA+.121504	0	.	16120941	16122671	0	1	1730	0
chr22	16121191	16121955	MIP101.73023	0	.	16121191	16121955	0	1	764	0
chr22	16121210	16122595	B_Cells_Pritchard.3372999	0	+	16121210	16122595	0	1	1385	0
chr22	16121376	16122595	B_Cells_Pritchard.3372997	0	-	16121376	16122595	0	3	495,267,457	0,495,762
chr22	16121474	16122015	B_cells_Cheung.204615	0	.	16121474	16122015	0	1	541	0
chr22	16139954	16141010	B_Cells_Pritchard.3373073	0	.	16139954	16141010	0	1	1056	0
chr22	16139954	16141009	MIP101.73027	0	.	16139954	16141009	0	1	1055	0
chr22	16141259	16142784	MIP101.73028	0	.	16141259	16142784	0	1	1525	0
chr22	16142415	16142757	liver_polyA+.137743	0	.	16142415	16142757	0	1	342	0
chr22	16142415	16142757	kidney_Gilad.88896	0	.	16142415	16142757	0	1	342	0
chr22	16145196	16146909	MIP101.73029	0	.	16145196	16146909	0	1	1713	0
chr22	16145713	16146233	liver_polyA+.137747	0	.	16145713	16146233	0	1	520	0
chr22	16164541	16165218	ZR751_Thompson.25476	0	.	16164541	16165218	0	1	677	0
chr22	16164647	16165223	B_Cells_Pritchard.3373145	0	.	16164647	16165223	0	1	576	0
chr22	16218536	16219168	prostate_carcinoma.105281	0	.	16218536	16219168	0	1	632	0
chr22	16418555	16420378	H9_polyA+.48106	0	.	16418555	16420378	0	1	1823	0
chr22	16638278	16638864	B_Cells_Pritchard.3374033	0	+	16638278	16638864	0	1	586	0
chr22	16639436	16643327	REMC_MyoepithelialBreast.96820	0	.	16639436	16643327	0	1	3891	0
chr22	16639787	16642605	HepG2_Caltech_ENCODE.40809	0	.	16639787	16642605	0	1	2818	0
chr22	16639868	16643119	REMC_LuminalBreast.103734	0	.	16639868	16643119	0	1	3251	0
chr22	16639870	16641066	H1_polyA+.121594	0	.	16639870	16641066	0	1	1196	0
chr22	16639873	16647303	B_Cells_Pritchard.3374041	0	-	16639873	16647303	0	2	3919,3158	0,4272
chr22	16639897	16642211	CD4_Plagnol_activated.69039	0	.	16639897	16642211	0	1	2314	0
chr22	16640015	16642134	K562.48430	0	.	16640015	16642134	0	1	2119	0
chr22	16640050	16642067	prostate_carcinoma.105349	0	.	16640050	16642067	0	1	2017	0
chr22	16640054	16640933	XR_040829	0	+	16640054	16640933	0	1	879	0
chr22	16640087	16642247	HIT000022715	0	+	16640087	16642247	0	1	2160	0
chr22	16640163	16642243	CD4_Plagnol_resting.66971	0	.	16640163	16642243	0	1	2080	0
chr22	16640232	16640635	prostate_normal.63208	0	.	16640232	16640635	0	1	403	0
chr22	16640283	16640646	lymph_node_Burge.53190	0	.	16640283	16640646	0	1	363	0
chr22	16640435	16641133	REMC_BreastStem.51874	0	.	16640435	16641133	0	1	698	0
chr22	16643543	16645416	REMC_MyoepithelialBreast.96821	0	.	16643543	16645416	0	1	1873	0
chr22	16643667	16644513	REMC_LuminalBreast.103735	0	.	16643667	16644513	0	1	846	0
chr22	16647551	16649056	B_cells_Cheung.205462	0	.	16647551	16649056	0	1	1505	0
chr22	16648185	16649050	REMC_MyoepithelialBreast.96823	0	.	16648185	16649050	0	1	865	0
chr22	16892149	16900734	Rinn_00029318	0	+	16892149	16900734	0	2	171,2210	0,6375
chr22	16892150	16900734	NR_024417	0	+	16892150	16900734	0	2	170,2209	0,6375
chr22	16892150	16900734	ENST00000443243	0	+	16892150	16900734	0	2	170,2209	0,6375
chr22	16895670	16896969	prostate_carcinoma.105485	0	.	16895670	16896969	0	1	1299	0
chr22	16898584	16900072	B_Cells_Pritchard.3374819	0	.	16898584	16900072	0	1	1488	0
chr22	16899026	16899753	REMC_LuminalBreast.103784	0	.	16899026	16899753	0	1	727	0
chr22	16899575	16900187	B_cells_Cheung.204694	0	.	16899575	16900187	0	1	612	0
chr22	16930039	16930742	prostate_carcinoma.105530	0	.	16930039	16930742	0	1	703	0
chr22	16933382	16934189	B_cells_Cheung.204699	0	.	16933382	16934189	0	1	807	0
chr22	16933690	16934014	B_Cells_Pritchard.3374957	0	.	16933690	16934014	0	1	324	0
chr22	16999325	17000146	B_cells_Cheung.204715	0	.	16999325	17000146	0	1	821	0
chr22	16999353	17000145	brain_AmbionMAQC.47613	0	.	16999353	17000145	0	1	792	0
chr22	16999364	17000007	CD4_Plagnol_activated.69092	0	.	16999364	17000007	0	1	643	0
chr22	16999375	17000128	melanoma_Garraway_short_term_cultures.73262	0	.	16999375	17000128	0	1	753	0
chr22	16999394	17000077	H1_polyA+.121672	0	.	16999394	17000077	0	1	683	0
chr22	17008998	17009391	liver_polyA+.138047	0	.	17008998	17009391	0	1	393	0
chr22	17010601	17011634	prostate_normal.63248	0	.	17010601	17011634	0	1	1033	0
chr22	17337717	17338350	A549_Myers.93181	0	.	17337717	17338350	0	1	633	0
chr22	17337972	17338280	melanoma_Garraway_short_term_cultures.73277	0	.	17337972	17338280	0	1	308	0
chr22	17337989	17339268	brain_AmbionMAQC.47701	0	.	17337989	17339268	0	1	1279	0
chr22	17337999	17339230	H1_polyA+.121759	0	.	17337999	17339230	0	1	1231	0
chr22	17338026	17362141	NR_002733	0	+	17338026	17362141	0	6	145,144,105,49,484,4500	0,17243,17577,18903,19066,19615
chr22	17338026	17362141	HIT000001363	0	+	17338026	17362141	0	6	145,144,105,49,483,4501	0,17243,17577,18903,19066,19614
chr22	17338026	17362141	ENST00000438934	0	+	17338026	17362141	0	5	145,144,105,49,5049	0,17243,17577,18903,19066
chr22	17338034	17398742	HIT000324457	0	+	17338034	17398742	0	6	137,144,205,201,154,448	0,17235,20198,21295,43831,60260
chr22	17338037	17398742	ENST00000440005	0	+	17338037	17398742	0	6	134,144,205,201,154,448	0,17232,20195,21292,43828,60257
chr22	17340655	17341074	H1_polyA+.121762	0	.	17340655	17341074	0	1	419	0
chr22	17342100	17342680	H1_polyA+.121764	0	.	17342100	17342680	0	1	580	0
chr22	17342958	17347902	H1_polyA+.121765	0	.	17342958	17347902	0	1	4944	0
chr22	17343169	17343514	brain_AmbionMAQC.47708	0	.	17343169	17343514	0	1	345	0
chr22	17343578	17343934	brain_AmbionMAQC.47709	0	.	17343578	17343934	0	1	356	0
chr22	17344448	17347886	melanoma_Garraway_short_term_cultures.73280	0	.	17344448	17347886	0	1	3438	0
chr22	17345311	17345770	brain_AmbionMAQC.47710	0	.	17345311	17345770	0	1	459	0
chr22	17347717	17365079	pHIT000122188	0	+	17347717	17365079	0	6	62,164,144,91,120,70	0,5651,7552,10515,14169,17292
chr22	17350496	17351914	melanoma_Garraway_short_term_cultures.73283	0	.	17350496	17351914	0	1	1418	0
chr22	17350924	17362006	pHIT000096099	0	+	17350924	17362006	0	5	31,144,91,143,120	0,4345,7308,8405,10962
chr22	17351317	17351973	H1_polyA+.121769	0	.	17351317	17351973	0	1	656	0
chr22	17351554	17351862	brain_AmbionMAQC.47716	0	.	17351554	17351862	0	1	308	0
chr22	17352202	17353633	H1_polyA+.121770	0	.	17352202	17353633	0	1	1431	0
chr22	17353069	17353627	melanoma_Garraway_short_term_cultures.73285	0	.	17353069	17353627	0	1	558	0
chr22	17353176	17353792	brain_AmbionMAQC.47718	0	.	17353176	17353792	0	1	616	0
chr22	17353214	17353960	HIT000092926	0	+	17353214	17353960	0	1	746	0
chr22	17353243	17355413	pHIT000122194	0	+	17353243	17355413	0	2	289,144	0,2026
chr22	17353243	17362006	pHIT000036578	0	+	17353243	17362006	0	5	289,144,91,143,120	0,2026,4989,6086,8643
chr22	17353710	17362318	A549_Myers.93185	0	+	17353710	17362318	0	2	54,2227	0,6381
chr22	17355111	17362227	melanoma_Garraway_short_term_cultures.73288	0	+	17355111	17362227	0	3	302,205,2898	0,3121,4218
chr22	17355273	17363711	H1_polyA+.121767	0	+	17355273	17363711	0	2	140,5479	0,2959
chr22	17355277	17355710	H9_polyA+.48176	0	.	17355277	17355710	0	1	433	0
chr22	17355386	17362141	prostate_carcinoma.105523	0	+	17355386	17362141	0	3	27,604,2812	0,2447,3943
chr22	17357258	17362227	melanoma_Garraway_short_term_cultures.73287	0	.	17357258	17362227	0	1	4969	0
chr22	17357442	17358626	H9_polyA+.48177	0	.	17357442	17358626	0	1	1184	0
chr22	17357632	17363761	H1_polyA+.121766	0	.	17357632	17363761	0	1	6129	0
chr22	17357655	17367528	brain_AmbionMAQC.47707	0	+	17357655	17367528	0	2	782,8199	0,1674
chr22	17359160	17359954	BT20_Thompson.23474	0	.	17359160	17359954	0	1	794	0
chr22	17359204	17362249	MDAMB468_Thompson.25983	0	.	17359204	17362249	0	1	3045	0
chr22	17359204	17363054	H9_polyA+.48178	0	.	17359204	17363054	0	1	3850	0
chr22	17359322	17360202	MDAMB231_Thompson.23418	0	.	17359322	17360202	0	1	880	0
chr22	17359326	17361073	BT474_Burge_Thompson.38090	0	.	17359326	17361073	0	1	1747	0
chr22	17359340	17362132	MIP101.73183	0	.	17359340	17362132	0	1	2792	0
chr22	17359381	17362318	A549_Myers.93186	0	.	17359381	17362318	0	1	2937	0
chr22	17359411	17360949	ZR751_Thompson.25512	0	.	17359411	17360949	0	1	1538	0
chr22	17359426	17360014	NEC_from_H9.79205	0	.	17359426	17360014	0	1	588	0
chr22	17359426	17359991	HeLa_polyA+_Chen.37929	0	.	17359426	17359991	0	1	565	0
chr22	17359478	17362142	liver_polyA+.138067	0	.	17359478	17362142	0	1	2664	0
chr22	17359601	17360132	prostate_normal.63257	0	.	17359601	17360132	0	1	531	0
chr22	17360008	17360557	REMC_LuminalBreast.103818	0	.	17360008	17360557	0	1	549	0
chr22	17360062	17361009	MCF7_Burge_Thompson.34266	0	.	17360062	17361009	0	1	947	0
chr22	17360265	17362139	MCF10A_Thompson.22689	0	.	17360265	17362139	0	1	1874	0
chr22	17360323	17362140	MDAMB231_Thompson.23419	0	.	17360323	17362140	0	1	1817	0
chr22	17360467	17361524	BT20_Thompson.23476	0	.	17360467	17361524	0	1	1057	0
chr22	17360496	17361625	kidney_Gilad.89077	0	.	17360496	17361625	0	1	1129	0
chr22	17361012	17362148	ZR751_Thompson.25513	0	.	17361012	17362148	0	1	1136	0
chr22	17361184	17362140	BT474_Burge_Thompson.38091	0	.	17361184	17362140	0	1	956	0
chr22	17361660	17362125	MeWo_Garraway.38686	0	.	17361660	17362125	0	1	465	0
chr22	17361733	17362143	BT20_Thompson.23475	0	.	17361733	17362143	0	1	410	0
chr22	17361754	17362142	kidney_Gilad.89076	0	.	17361754	17362142	0	1	388	0
chr22	17363877	17367557	H1_polyA+.121773	0	.	17363877	17367557	0	1	3680	0
chr22	17364456	17366014	HIT000093681	0	+	17364456	17366014	0	1	1558	0
chr22	17364861	17365700	H9_polyA+.48180	0	.	17364861	17365700	0	1	839	0
chr22	17365787	17367264	HIT000497290	0	+	17365787	17367264	0	1	1477	0
chr22	17365943	17367017	melanoma_Garraway_short_term_cultures.73290	0	.	17365943	17367017	0	1	1074	0
chr22	17381671	17388488	H1_polyA+.121779	0	.	17381671	17388488	0	1	6817	0
chr22	17381714	17383280	REMC_LuminalBreast.103819	0	.	17381714	17383280	0	1	1566	0
chr22	17382641	17385106	HIT000044853	0	+	17382641	17385106	0	1	2465	0
chr22	17383340	17384102	REMC_MyoepithelialBreast.96753	0	.	17383340	17384102	0	1	762	0
chr22	17383465	17388426	brain_AmbionMAQC.47719	0	.	17383465	17388426	0	1	4961	0
chr22	17383468	17384184	prostate_carcinoma.105524	0	.	17383468	17384184	0	1	716	0
chr22	17383538	17384273	H9_polyA+.48181	0	.	17383538	17384273	0	1	735	0
chr22	17384186	17386138	REMC_MyoepithelialBreast.96754	0	.	17384186	17386138	0	1	1952	0
chr22	17384671	17385869	melanoma_Garraway_short_term_cultures.73291	0	.	17384671	17385869	0	1	1198	0
chr22	17384702	17388120	prostate_carcinoma.105525	0	.	17384702	17388120	0	1	3418	0
chr22	17384713	17389024	REMC_LuminalBreast.103820	0	.	17384713	17389024	0	1	4311	0
chr22	17384778	17386161	BT474_Burge_Thompson.38092	0	.	17384778	17386161	0	1	1383	0
chr22	17384801	17387679	MDAMB468_Thompson.25987	0	.	17384801	17387679	0	1	2878	0
chr22	17384824	17396999	MIP101.73184	0	-	17384824	17396999	0	2	1124,196	0,11979
chr22	17384825	17386166	BT20_Thompson.23477	0	.	17384825	17386166	0	1	1341	0
chr22	17384827	17386568	MCF7_Burge_Thompson.34267	0	.	17384827	17386568	0	1	1741	0
chr22	17385122	17397001	XR_037423	0	-	17385122	17397001	0	9	1246,97,123,148,10,17,47,100,287	0,1246,7674,9420,9684,10007,10361,11335,11592
chr22	17385122	17395330	XR_037995	0	-	17385122	17395330	0	6	1246,97,123,146,29,60	0,1246,7674,9420,9995,10148
chr22	17385177	17386123	B_cells_Cheung.204763	0	.	17385177	17386123	0	1	946	0
chr22	17385335	17387865	HIT000094631	0	+	17385335	17387865	0	1	2530	0
chr22	17385346	17387761	NR_024159	0	+	17385346	17387761	0	1	2415	0
chr22	17385398	17386121	CD4_Plagnol_resting.67037	0	.	17385398	17386121	0	1	723	0
chr22	17385398	17386122	prostate_normal.63258	0	.	17385398	17386122	0	1	724	0
chr22	17385427	17386136	B_Cells_Pritchard.3375601	0	.	17385427	17386136	0	1	709	0
chr22	17385448	17387757	HIT000194021	0	-	17385448	17387757	0	1	2309	0
chr22	17385668	17386426	MIP101.73186	0	.	17385668	17386426	0	1	758	0
chr22	17386230	17388294	REMC_MyoepithelialBreast.96755	0	.	17386230	17388294	0	1	2064	0
chr22	17386282	17387493	ZR751_Thompson.25515	0	.	17386282	17387493	0	1	1211	0
chr22	17386289	17387629	BT20_Thompson.23478	0	.	17386289	17387629	0	1	1340	0
chr22	17386304	17387609	BT474_Burge_Thompson.38093	0	.	17386304	17387609	0	1	1305	0
chr22	17386363	17387705	B_Cells_Pritchard.3375603	0	.	17386363	17387705	0	1	1342	0
chr22	17386426	17388399	MIP101.73187	0	.	17386426	17388399	0	1	1973	0
chr22	17386488	17387690	CD4_Plagnol_resting.67038	0	.	17386488	17387690	0	1	1202	0
chr22	17386528	17387796	prostate_normal.63259	0	.	17386528	17387796	0	1	1268	0
chr22	17386545	17387536	H9_polyA+.48183	0	.	17386545	17387536	0	1	991	0
chr22	17386582	17387526	T47D_Burge_Thompson.31047	0	.	17386582	17387526	0	1	944	0
chr22	17386641	17388338	melanoma_Garraway_short_term_cultures.73292	0	.	17386641	17388338	0	1	1697	0
chr22	17386687	17387213	testes_Burge.56339	0	.	17386687	17387213	0	1	526	0
chr22	17386803	17387344	HeLa_polyA+_Chen.37930	0	.	17386803	17387344	0	1	541	0
chr22	17386803	17387672	MCF7_Burge_Thompson.34268	0	.	17386803	17387672	0	1	869	0
chr22	17389826	17390669	REMC_LuminalBreast.103822	0	.	17389826	17390669	0	1	843	0
chr22	17389828	17390639	REMC_MyoepithelialBreast.96757	0	.	17389828	17390639	0	1	811	0
chr22	17389962	17390811	H1_polyA+.121782	0	.	17389962	17390811	0	1	849	0
chr22	17394235	17395512	HIT000070728	0	-	17394235	17395512	0	1	1277	0
chr22	17394998	17395517	brain_AmbionMAQC.47732	0	.	17394998	17395517	0	1	519	0
chr22	17395869	17396540	REMC_MyoepithelialBreast.96758	0	.	17395869	17396540	0	1	671	0
chr22	17396235	17396666	REMC_LuminalBreast.103825	0	.	17396235	17396666	0	1	431	0
chr22	17397036	17398387	pHIT000122197	0	+	17397036	17398387	0	2	216,93	0,1258
chr22	17397036	17397759	pHIT000036579	0	+	17397036	17397759	0	2	216,135	0,588
chr22	17397862	17398366	REMC_LuminalBreast.103826	0	.	17397862	17398366	0	1	504	0
chr22	17397864	17398629	brain_AmbionMAQC.47735	0	.	17397864	17398629	0	1	765	0
chr22	17397872	17398336	T47D_Burge_Thompson.31049	0	.	17397872	17398336	0	1	464	0
chr22	17534017	17534822	B_Cells_Pritchard.3376017	0	.	17534017	17534822	0	1	805	0
chr22	17537822	17538718	REMC_LuminalBreast.103855	0	.	17537822	17538718	0	1	896	0
chr22	17538223	17538964	B_cells_Cheung.204788	0	.	17538223	17538964	0	1	741	0
chr22	17538880	17540144	A549_Myers.93231	0	.	17538880	17540144	0	2	516,684	0,580
chr22	17538907	17540274	HIT000332799	0	+	17538907	17540274	0	1	1367	0
chr22	17539060	17541816	K562.48496	0	.	17539060	17541816	0	1	2756	0
chr22	17539145	17540381	ZR751_Thompson.25570	0	.	17539145	17540381	0	1	1236	0
chr22	17539185	17540665	MCF7_Burge_Thompson.34284	0	.	17539185	17540665	0	1	1480	0
chr22	17539203	17541630	B_cells_Cheung.204789	0	.	17539203	17541630	0	1	2427	0
chr22	17539204	17540436	T47D_Burge_Thompson.31063	0	.	17539204	17540436	0	1	1232	0
chr22	17539210	17540328	BT474_Burge_Thompson.38157	0	.	17539210	17540328	0	1	1118	0
chr22	17539211	17541764	H1_polyA+.121822	0	.	17539211	17541764	0	1	2553	0
chr22	17539213	17540847	prostate_normal.63285	0	.	17539213	17540847	0	1	1634	0
chr22	17539214	17540512	BT20_Thompson.23485	0	.	17539214	17540512	0	1	1298	0
chr22	17539220	17540497	H9_polyA+.48195	0	.	17539220	17540497	0	1	1277	0
chr22	17539220	17540858	CD4_Plagnol_activated.69129	0	.	17539220	17540858	0	1	1638	0
chr22	17539236	17540345	HIT000272682	0	+	17539236	17540345	0	1	1109	0
chr22	17539237	17540660	brain_AmbionMAQC.47640	0	.	17539237	17540660	0	1	1423	0
chr22	17539239	17540310	MeWo_Garraway.38690	0	.	17539239	17540310	0	1	1071	0
chr22	17539242	17540305	HeLa_polyA+_Chen.37931	0	.	17539242	17540305	0	1	1063	0
chr22	17539243	17540758	melanoma_Garraway_short_term_cultures.73304	0	.	17539243	17540758	0	1	1515	0
chr22	17539248	17539797	CD4_Plagnol_resting.67043	0	.	17539248	17539797	0	1	549	0
chr22	17539412	17541198	REMC_MyoepithelialBreast.96789	0	.	17539412	17541198	0	1	1786	0
chr22	17539422	17540646	H1_rRNA-depleted_UCSD_REMC.91794	0	.	17539422	17540646	0	1	1224	0
chr22	17539713	17540335	MDAMB231_Thompson.23433	0	.	17539713	17540335	0	1	622	0
chr22	17539854	17540526	CD4_Plagnol_resting.67044	0	.	17539854	17540526	0	1	672	0
chr22	17539942	17540661	H9_polyA-_Chen.15253	0	.	17539942	17540661	0	1	719	0
chr22	17540936	17541327	H1_rRNA-depleted_UCSD_REMC.91793	0	.	17540936	17541327	0	1	391	0
chr22	17659621	17696574	REMC_LuminalBreast.103869	0	+	17659621	17696574	0	2	232,654	0,36299
chr22	17659801	17696584	REMC_BreastStem.51927	0	+	17659801	17696584	0	2	52,664	0,36119
chr22	17692757	17694705	REMC_BreastStem.51931	0	.	17692757	17694705	0	1	1948	0
chr22	17692927	17695159	REMC_MyoepithelialBreast.96856	0	.	17692927	17695159	0	1	2232	0
chr22	17693124	17694252	B_cells_Cheung.204809	0	.	17693124	17694252	0	1	1128	0
chr22	17693263	17694231	REMC_LuminalBreast.103872	0	.	17693263	17694231	0	1	968	0
chr22	17693812	17694573	B_Cells_Pritchard.3376593	0	.	17693812	17694573	0	1	761	0
chr22	17695500	17696556	HepG2_Caltech_ENCODE.40879	0	.	17695500	17696556	0	1	1056	0
chr22	17695511	17696574	REMC_LuminalBreast.103870	0	.	17695511	17696574	0	1	1063	0
chr22	17695807	17696668	B_cells_Cheung.204812	0	.	17695807	17696668	0	1	861	0
chr22	17695819	17696595	CD4_Plagnol_resting.67049	0	.	17695819	17696595	0	1	776	0
chr22	17695822	17696556	B_Cells_Pritchard.3376599	0	+	17695822	17696556	0	1	734	0
chr22	17695830	17696549	H1_polyA+.121864	0	.	17695830	17696549	0	1	719	0
chr22	17695842	17696462	MIP101.73253	0	.	17695842	17696462	0	1	620	0
chr22	17695865	17696449	melanoma_Garraway_short_term_cultures.73317	0	.	17695865	17696449	0	1	584	0
chr22	17695871	17696584	REMC_BreastStem.51928	0	.	17695871	17696584	0	1	713	0
chr22	17695890	17696579	CD4_Plagnol_activated.69132	0	.	17695890	17696579	0	1	689	0
chr22	17695921	17696553	prostate_carcinoma.105605	0	.	17695921	17696553	0	1	632	0
chr22	17913257	17972636	pHIT000122223	0	-	17913257	17972636	0	3	203,337,129	0,52276,59250
chr22	17918329	17924347	Rinn_00029645	0	-	17918329	17924347	0	2	1188,829	0,5189
chr22	17918356	17934330	HIT000097456	0	-	17918356	17934330	0	6	440,641,122,84,122,577	0,520,5163,5743,14032,15397
chr22	17944135	17944894	B_Cells_Pritchard.3377053	0	.	17944135	17944894	0	1	759	0
chr22	17978780	17979522	B_Cells_Pritchard.3377181	0	.	17978780	17979522	0	1	742	0
chr22	18222514	18226326	K562.48591	0	+	18222514	18226326	0	2	116,3202	0,610
chr22	18222514	18224167	H1_polyA+.121941	0	+	18222514	18224167	0	2	116,1043	0,610
chr22	18226517	18227299	melanoma_Garraway_short_term_cultures.73369	0	.	18226517	18227299	0	1	782	0
chr22	18226589	18227123	CD4_Plagnol_resting.67093	0	.	18226589	18227123	0	1	534	0
chr22	18226591	18227355	HepG2_Caltech_ENCODE.40897	0	.	18226591	18227355	0	1	764	0
chr22	18226592	18227503	B_cells_Cheung.204882	0	.	18226592	18227503	0	1	911	0
chr22	18226613	18227380	MIP101.73325	0	.	18226613	18227380	0	1	767	0
chr22	18226619	18227356	K562.48592	0	.	18226619	18227356	0	1	737	0
chr22	18226628	18227378	H1_polyA+.121944	0	.	18226628	18227378	0	1	750	0
chr22	18229139	18229458	B_Cells_Pritchard.3377761	0	+	18229139	18229458	0	1	319	0
chr22	18231905	18233915	REMC_LuminalBreast.103948	0	.	18231905	18233915	0	1	2010	0
chr22	18236164	18237454	B_Cells_Pritchard.3377787	0	.	18236164	18237454	0	1	1290	0
chr22	18237252	18239692	REMC_LuminalBreast.103950	0	.	18237252	18239692	0	1	2440	0
chr22	18237492	18238576	prostate_carcinoma.107247	0	.	18237492	18238576	0	1	1084	0
chr22	18237559	18239511	B_Cells_Pritchard.3377789	0	.	18237559	18239511	0	1	1952	0
chr22	18237754	18238196	A549_Myers.93290	0	.	18237754	18238196	0	1	442	0
chr22	18239611	18240103	B_Cells_Pritchard.3377791	0	.	18239611	18240103	0	1	492	0
chr22	18241558	18241972	B_cells_Cheung.204888	0	.	18241558	18241972	0	1	414	0
chr22	18435957	18438463	REMC_LuminalBreast.103991	0	.	18435957	18438463	0	1	2506	0
chr22	18436073	18438223	B_cells_Cheung.205027	0	.	18436073	18438223	0	1	2150	0
chr22	18436227	18436833	melanoma_Garraway_short_term_cultures.73406	0	.	18436227	18436833	0	1	606	0
chr22	18436229	18436540	B_Cells_Pritchard.3378195	0	+	18436229	18436540	0	1	311	0
chr22	18436941	18438354	H1_polyA+.121979	0	.	18436941	18438354	0	1	1413	0
chr22	18436942	18438258	melanoma_Garraway_short_term_cultures.73407	0	.	18436942	18438258	0	1	1316	0
chr22	18436965	18437461	MIP101.73720	0	.	18436965	18437461	0	1	496	0
chr22	18436996	18438148	CD4_Plagnol_resting.67148	0	.	18436996	18438148	0	1	1152	0
chr22	18437011	18438202	CD4_Plagnol_activated.69594	0	.	18437011	18438202	0	1	1191	0
chr22	18437012	18438194	prostate_carcinoma.105930	0	.	18437012	18438194	0	1	1182	0
chr22	18437017	18438384	REMC_MyoepithelialBreast.96892	0	.	18437017	18438384	0	1	1367	0
chr22	18437035	18437493	liver_polyA+.138271	0	.	18437035	18437493	0	1	458	0
chr22	18437229	18437637	MeWo_Garraway.38785	0	.	18437229	18437637	0	1	408	0
chr22	18442750	18444677	REMC_LuminalBreast.103994	0	.	18442750	18444677	0	1	1927	0
chr22	18443574	18444653	B_cells_Cheung.205031	0	.	18443574	18444653	0	1	1079	0
chr22	18445781	18446484	B_cells_Cheung.205033	0	.	18445781	18446484	0	1	703	0
chr22	18519523	18521055	brain_AmbionMAQC.47753	0	.	18519523	18521055	0	1	1532	0
chr22	18519553	18520848	B_cells_Cheung.204933	0	.	18519553	18520848	0	1	1295	0
chr22	18519584	18520837	MCF10A_Thompson.22736	0	.	18519584	18520837	0	1	1253	0
chr22	18519596	18520806	CD4_Plagnol_activated.69210	0	.	18519596	18520806	0	1	1210	0
chr22	18519604	18520972	H1_polyA+.122190	0	.	18519604	18520972	0	1	1368	0
chr22	18519608	18520669	MDAMB231_Thompson.23477	0	.	18519608	18520669	0	1	1061	0
chr22	18519671	18520971	melanoma_Garraway_short_term_cultures.73430	0	.	18519671	18520971	0	1	1300	0
chr22	18519888	18520260	MB435_Burge.46761	0	.	18519888	18520260	0	1	372	0
chr22	18519889	18520596	CD4_Plagnol_resting.67178	0	.	18519889	18520596	0	1	707	0
chr22	18519898	18520867	BT20_Thompson.23522	0	.	18519898	18520867	0	1	969	0
chr22	18522472	18522791	MB435_Burge.46758	0	.	18522472	18522791	0	1	319	0
chr22	18543778	18544202	liver_polyA+.138299	0	.	18543778	18544202	0	1	424	0
chr22	18547039	18547470	A549_Myers.93337	0	.	18547039	18547470	0	1	431	0
chr22	18566250	18572441	Rinn_00029346	0	-	18566250	18572441	0	4	524,1273,168,267	0,1326,5604,5924
chr22	18566251	18572441	ENST00000506039	0	-	18566251	18572441	0	4	523,1272,167,266	0,1326,5604,5924
chr22	18566251	18572441	HIT000017419	0	-	18566251	18572441	0	4	523,1272,167,261	0,1326,5604,5929
chr22	18566294	18572440	Rinn_00029362	0	+	18566294	18572440	0	4	479,1273,168,267	0,1281,5559,5879
chr22	18566676	18567377	prostate_carcinoma.105692	0	.	18566676	18567377	0	1	701	0
chr22	18574720	18575677	melanoma_Garraway_short_term_cultures.73432	0	.	18574720	18575677	0	1	957	0
chr22	18574742	18575330	B_cells_Cheung.204936	0	.	18574742	18575330	0	1	588	0
chr22	18575020	18576524	prostate_carcinoma.105695	0	.	18575020	18576524	0	1	1504	0
chr22	18575388	18576038	B_cells_Cheung.204937	0	.	18575388	18576038	0	1	650	0
chr22	18576087	18607900	pHIT000122277	0	-	18576087	18607900	0	4	88,112,114,88	0,483,19869,31725
chr22	18576350	18576961	melanoma_Garraway_short_term_cultures.73433	0	.	18576350	18576961	0	1	611	0
chr22	18578392	18579511	prostate_carcinoma.105696	0	.	18578392	18579511	0	1	1119	0
chr22	18587632	18588845	MIP101.73351	0	.	18587632	18588845	0	1	1213	0
chr22	18587803	18588648	B_Cells_Pritchard.3378345	0	.	18587803	18588648	0	1	845	0
chr22	18592191	18592881	A549_Myers.93340	0	.	18592191	18592881	0	1	690	0
chr22	18592956	18593351	A549_Myers.93341	0	.	18592956	18593351	0	1	395	0
chr22	18687946	18688837	B_Cells_Pritchard.3378605	0	+	18687946	18688837	0	3	361,275,195	0,421,696
chr22	18690030	18690330	B_cells_Cheung.204952	0	.	18690030	18690330	0	1	300	0
chr22	18690356	18690809	MIP101.73360	0	.	18690356	18690809	0	1	453	0
chr22	18690413	18690828	B_cells_Cheung.204953	0	.	18690413	18690828	0	1	415	0
chr22	18691403	18691996	prostate_carcinoma.105709	0	.	18691403	18691996	0	1	593	0
chr22	19106391	19107580	melanoma_Garraway_short_term_cultures.73449	0	.	19106391	19107580	0	1	1189	0
chr22	19106426	19106951	B_Cells_Pritchard.3378873	0	-	19106426	19106951	0	1	525	0
chr22	19106470	19107131	brain_AmbionMAQC.47777	0	.	19106470	19107131	0	1	661	0
chr22	19276931	19287509	B_Cells_Pritchard.3379691	0	+	19276931	19287509	0	2	288,388	0,10190
chr22	19283505	19285086	REMC_MyoepithelialBreast.96956	0	.	19283505	19285086	0	1	1581	0
chr22	19283914	19285239	REMC_LuminalBreast.104053	0	.	19283914	19285239	0	1	1325	0
chr22	19286618	19289210	pHIT000036643	0	-	19286618	19289210	0	6	4,204,80,112,62,27	0,287,1596,1984,2155,2565
chr22	19286881	19310421	ENST00000416717	0	-	19286881	19310421	0	18	178,129,136,233,204,99,90,146,87,73,133,155,53,103,75,143,87,39	0,436,1333,1721,2302,3583,4138,4816,8034,11068,13715,18668,18947,19104,19890,20114,21504,23501
chr22	19288162	19289622	B_Cells_Pritchard.3379105	0	-	19288162	19289622	0	1	1460	0
chr22	19288866	19289850	REMC_MyoepithelialBreast.96958	0	.	19288866	19289850	0	1	984	0
chr22	19289273	19307118	pHIT000122317	0	-	19289273	19307118	0	5	208,146,87,93,123	0,2424,5642,16276,17722
chr22	19289773	19298344	K562.48702	0	-	19289773	19298344	0	3	114,1431,6267	0,639,2304
chr22	19290732	19291657	B_Cells_Pritchard.3379121	0	-	19290732	19291657	0	1	925	0
chr22	19291466	19293075	BT20_Thompson.23622	0	-	19291466	19293075	0	2	377,998	0,611
chr22	19291773	19293011	B_Cells_Pritchard.3379123	0	-	19291773	19293011	0	1	1238	0
chr22	19291773	19293011	B_Cells_Pritchard.3379125	0	+	19291773	19293011	0	2	493,492	0,746
chr22	19291974	19292405	B_cells_Cheung.205047	0	.	19291974	19292405	0	1	431	0
chr22	19292029	19298344	K562.48703	0	.	19292029	19298344	0	1	6315	0
chr22	19292216	19293084	H1_polyA+.122132	0	.	19292216	19293084	0	1	868	0
chr22	19292491	19293090	B_cells_Cheung.205048	0	.	19292491	19293090	0	1	599	0
chr22	19292507	19293929	REMC_LuminalBreast.104054	0	.	19292507	19293929	0	1	1422	0
chr22	19293399	19296366	BT20_Thompson.23623	0	.	19293399	19296366	0	1	2967	0
chr22	19293718	19294204	B_Cells_Pritchard.3379133	0	+	19293718	19294204	0	1	486	0
chr22	19294848	19296108	REMC_LuminalBreast.104055	0	.	19294848	19296108	0	1	1260	0
chr22	19297398	19306330	BT20_Thompson.23624	0	-	19297398	19306330	0	6	624,26,121,53,108,117	0,5791,8151,8430,8587,8815
chr22	192