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<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">PLoS Negl Trop Dis</journal-id>
<journal-id journal-id-type="publisher-id">plos</journal-id>
<journal-id journal-id-type="pmc">plosntds</journal-id><journal-title-group>
<journal-title>PLoS Neglected Tropical Diseases</journal-title></journal-title-group>
<issn pub-type="epub">1935-2735</issn>
<publisher>
<publisher-name>Public Library of Science</publisher-name>
<publisher-loc>San Francisco, USA</publisher-loc></publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">PNTD-D-14-00206</article-id>
<article-id pub-id-type="doi">10.1371/journal.pntd.0003094</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Medicine and health sciences</subject><subj-group><subject>Infectious diseases</subject><subj-group><subject>Fungal diseases</subject><subj-group><subject>Sporotrichosis</subject></subj-group></subj-group></subj-group></subj-group></article-categories>
<title-group>
<article-title>Sporotrichosis in Rio de Janeiro, Brazil: <italic>Sporothrix brasiliensis</italic> Is Associated with Atypical Clinical Presentations</article-title>
<alt-title alt-title-type="running-head">Clinical Features of <italic>Sporothrix brasiliensis</italic></alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Almeida-Paes</surname><given-names>Rodrigo</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>de Oliveira</surname><given-names>Manoel Marques Evangelista</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Freitas</surname><given-names>Dayvison Francis Saraiva</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>do Valle</surname><given-names>Antônio Carlos Francesconi</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Zancopé-Oliveira</surname><given-names>Rosely Maria</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Gutierrez-Galhardo</surname><given-names>Maria Clara</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib>
</contrib-group>
<aff id="aff1"><label>1</label><addr-line>Laboratório de Micologia, Instituto de Pesquisa Clínica Evandro Chagas, Fundação Oswaldo Cruz, Rio de Janeiro, Rio de Janeiro, Brazil</addr-line></aff>
<aff id="aff2"><label>2</label><addr-line>Laboratório de Dermatologia Infecciosa, Instituto de Pesquisa Clínica Evandro Chagas, Fundação Oswaldo Cruz, Rio de Janeiro, Rio de Janeiro, Brazil</addr-line></aff>
<contrib-group>
<contrib contrib-type="editor" xlink:type="simple"><name name-style="western"><surname>Vinetz</surname><given-names>Joseph M.</given-names></name>
<role>Editor</role>
<xref ref-type="aff" rid="edit1"/></contrib>
</contrib-group>
<aff id="edit1"><addr-line>University of California San Diego School of Medicine, United States of America</addr-line></aff>
<author-notes>
<corresp id="cor1">* E-mail: <email xlink:type="simple">rodrigo.paes@ipec.fiocruz.br</email></corresp>
<fn fn-type="conflict"><p>The authors have declared that no competing interests exist.</p></fn>
<fn fn-type="con"><p>Conceived and designed the experiments: RMZO MCGG. Performed the experiments: RAP MMEdO DFSF ACFdV MCGG. Analyzed the data: RAP MMEdO RMZO MCGG. Contributed reagents/materials/analysis tools: RMZO. Wrote the paper: RAP MCGG.</p></fn>
</author-notes>
<pub-date pub-type="collection"><month>9</month><year>2014</year></pub-date>
<pub-date pub-type="epub"><day>18</day><month>9</month><year>2014</year></pub-date>
<volume>8</volume>
<issue>9</issue>
<elocation-id>e3094</elocation-id>
<history>
<date date-type="received"><day>5</day><month>2</month><year>2014</year></date>
<date date-type="accepted"><day>3</day><month>7</month><year>2014</year></date>
</history>
<permissions>
<copyright-year>2014</copyright-year>
<copyright-holder>Almeida-Paes et al</copyright-holder><license xlink:type="simple"><license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/" xlink:type="simple">Creative Commons Attribution License</ext-link>, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p></license></permissions>
<abstract><sec>
<title>Background</title>
<p>There have been several recent changes in the taxonomy of <italic>Sporothrix schenckii</italic> as well as new observations regarding the clinical aspects of sporotrichosis. In this study, we determined the identification of the <italic>Sporothrix</italic> species associated with both classic and unusual clinical aspects of sporotrichosis observed in the endemic area of sporotrichosis in Rio de Janeiro, Brazil.</p>
</sec><sec>
<title>Methodology/Principal Findings</title>
<p>To verify whether <italic>S. brasiliensis</italic> is associated with clinical manifestations of sporotrichosis, a cross-sectional study was performed in which <italic>Sporothrix</italic> isolates from 50 patients with different clinical manifestations were analyzed and their isolates were studied by phenotypic and genotypic methods. Data from these patients revealed a distinct clinical picture and therapeutic response in infections caused by <italic>Sporothrix brasiliensis</italic> (n = 45) compared to patients with <italic>S. schenckii</italic> sensu stricto (n = 5). <italic>S. brasiliensis</italic> was associated with disseminated cutaneous infection without underlying disease, hypersensitivity reactions, and mucosal infection, whereas patients with <italic>S. schenckii</italic> presented with less severe and more often localized disease, similar to the majority of previously described sporotrichosis cases. Interestingly, <italic>S. brasiliensis</italic>-infected patients overall required shorter durations of itraconazole (median 16 weeks) compared to the individuals with <italic>S. schenckii</italic> (median 24 weeks).</p>
</sec><sec>
<title>Conclusions/Significance</title>
<p>These findings suggest that <italic>Sporothrix</italic> species are linked to different clinical manifestations of sporotrichosis and that <italic>S. brasiliensis</italic> is effectively treated with oral itraconazole.</p>
</sec></abstract>
<abstract abstract-type="summary"><title>Author Summary</title>
<p><italic>Sporothrix brasiliensis</italic> is a dimorphic fungus that is responsible for an ongoing epidemic of cat-transmitted sporotrichosis in Rio de Janeiro, Brazil. More than 4,100 human cases have been diagnosed in only one health institution since 1998. Most patients are children or housewives with frequent contact with domestic and/or stray cats. The patients usually live under poverty conditions in suburban regions of the metropolitan area with poor access to health care and unsanitary living conditions. For instance, most patients report that they need to have cats in their houses as a control against invasion by rodents. It is important to study the clinical aspects of <italic>S. brasiliensis</italic> infection in order to improve patient management, including optimizing therapeutic and prophylactic approaches. We have found that <italic>S. brasiliensis</italic> is responsible for some unusual clinical manifestations of sporotrichosis, such as disseminated infection in immunocompetent patients and hypersensitivity reactions. Also, treatment with itraconazole appears to be extremely effective in most cases of infection by <italic>S. brasiliensis</italic>. Our study will contribute for the management of the infection caused by <italic>S. brasiliensis</italic>, bringing benefits to the patients with sporotrichosis.</p>
</abstract>
<funding-group><funding-statement>This work was supported by Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro [E-26/110.619/2012 and E-26/103.157/2011 to RMZO], Conselho Nacional de Desenvolvimento Científico e Tecnológico [350338/2000-0 to RMZO], Papes/FIOCRUZ - Papes VI(APQ)[407693/2012-2 to RMZO], and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior [2445/11-5 to MMEdO]. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement></funding-group><counts><page-count count="8"/></counts></article-meta>
</front>
<body><sec id="s1">
<title>Introduction</title>
<p>Sporotrichosis is a subcutaneous mycosis with a worldwide distribution that is currently notable for areas of especially high endemicity in Latin America <xref ref-type="bibr" rid="pntd.0003094-Barros1">[1]</xref>–<xref ref-type="bibr" rid="pntd.0003094-QueirozTelles1">[3]</xref>. Some authors classify sporotrichosis as an implantation mycosis, because this infection may also involves other sites beyond the skin and the subcutaneous tissues, such as lymphatic vessels, muscles, fascia, cartilage, and bones <xref ref-type="bibr" rid="pntd.0003094-QueirozTelles1">[3]</xref>. Historically, sporotrichosis has been attributed to a single species, <italic>Sporothrix schenckii</italic> <xref ref-type="bibr" rid="pntd.0003094-Barros1">[1]</xref>. However, phenotypic and genotypic analyses by Marimon and coworkers <xref ref-type="bibr" rid="pntd.0003094-Marimon1">[4]</xref> have led to the identification of four new species in the <italic>Sporothrix</italic> complex: (i) <italic>S. globosa</italic>, a globally distributed fungus <xref ref-type="bibr" rid="pntd.0003094-Cruz1">[5]</xref>–<xref ref-type="bibr" rid="pntd.0003094-Oliveira1">[7]</xref>; (ii) <italic>S. brasiliensis</italic>, the species related to the zoonotic epidemic of sporotrichosis in Rio de Janeiro, Brazil <xref ref-type="bibr" rid="pntd.0003094-Oliveira2">[8]</xref>; (iii) <italic>S. mexicana</italic>, initially limited to Mexico <xref ref-type="bibr" rid="pntd.0003094-Marimon1">[4]</xref>, but with recent cases reported in other regions <xref ref-type="bibr" rid="pntd.0003094-Dias1">[9]</xref>, <xref ref-type="bibr" rid="pntd.0003094-Rodrigues1">[10]</xref>; and (iv) <italic>S. luriei</italic>, formerly <italic>S. schenckii</italic> var. <italic>luriei</italic> <xref ref-type="bibr" rid="pntd.0003094-Marimon2">[11]</xref>.</p>
<p>Classical infection is associated with traumatic subcutaneous inoculation of soil, plants, or organic matter contaminated with fungus, with rare cases of transmission occurring from infected animals <xref ref-type="bibr" rid="pntd.0003094-Barros1">[1]</xref>. However, in Rio de Janeiro state, Brazil, sporotrichosis is currently largely occurring via transmission from infected cats to humans <xref ref-type="bibr" rid="pntd.0003094-Freitas1">[12]</xref>. Recently, our group performed a georeferencing survey of sporotrichosis cases that revealed a transmission belt along the border between Rio de Janeiro city and adjacent counties in the Greater Metropolitan Area <xref ref-type="bibr" rid="pntd.0003094-Silva1">[13]</xref>. Genotypic analyses have shown that isolates from the Rio de Janeiro epidemic have a high genetic similarity, which is suggestive of a common niche <xref ref-type="bibr" rid="pntd.0003094-GutierrezGalhardo1">[14]</xref>, <xref ref-type="bibr" rid="pntd.0003094-Reis1">[15]</xref>.</p>
<p>Although some studies have described several clinical aspects of this epidemic <xref ref-type="bibr" rid="pntd.0003094-Freitas1">[12]</xref>, <xref ref-type="bibr" rid="pntd.0003094-Barros2">[16]</xref>, <xref ref-type="bibr" rid="pntd.0003094-Barros3">[17]</xref>, taxonomic analyses have not been correlated with disease presentations. Therefore, the main purpose of this study was to investigate a possible association between manifestations of sporotrichosis in Rio de Janeiro and the different genomic species of <italic>S. schenckii</italic> sensu lato.</p>
</sec><sec id="s2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="s2a">
<title>Ethics Statement</title>
<p>This study was approved by the Research Ethics Committee of Fundação Oswaldo Cruz (FIOCRUZ), under the number CAAE-0024.0.009.000-10. All patient samples and data were analyzed anonymously after receiving a random number during database construction.</p>
</sec><sec id="s2b">
<title>Patients</title>
<p>A cross-sectional study was performed in 50 patients with different clinical forms of sporotrichosis. They were selected from a database of 246 patients <xref ref-type="bibr" rid="pntd.0003094-Oliveira2">[8]</xref> who had <italic>Sporothrix</italic> strains isolated from clinical specimens and stored at the Pathogenic Fungal Collection of the Laboratório de Micologia at IPEC, and which were part of a cohort of 1,563 patients with sporotrichosis treated from 1999 to 2008 at the Instituto de Pesquisa Clínica Evandro Chagas (IPEC). Patients were submitted to a protocol that included clinical evaluation, mycological examination of clinical specimens and blood tests (blood count, biochemistry and liver function). In the absence of disseminated disease, oral itraconazole 100 mg/day was prescribed. Higher intraconazole doses were used if the lesions worsened or remained unchanged after eight weeks. The duration of treatment was determined by clinical cure (lesion healing defined as epithelization and absence of crusts, infiltrates, or erythema). Clinical cure of extracutaneous sites was defined as the disappearance of preexisting lesions in cases of conjunctival, nasal, or oral mucosa involvement. Patients with disseminated sporotrichosis received amphotericin B at a total dose of 1–2.5 g. Follow-up was 4–12 weeks after clinical cure. The data were collected by review of medical charts and were recorded on a standardized case report form, containing demographic, epidemiologic, clinical and follow-up information. Since the Rio de Janeiro sporotrichosis outbreak is massive, we had to establish some criteria to select patients related to common and unusual manifestations of sporotrichosis. Inclusion criteria for selection in this study were: patients who lived in Rio de Janeiro city or in other cities from Rio de Janeiro state in Brazil, patients with common (fixed cutaneous and lymphocutaneous) and unusual (disseminated cutaneous, extracutaneous, and disseminated) clinical forms of sporotrichosis <xref ref-type="bibr" rid="pntd.0003094-Barros1">[1]</xref>, patients with and without hypersensitivity manifestations (eythema nodosum or erythema multiforme), patients co-infected with HIV, and patients treated with itraconazole as well as patients with spontaneous regression of lesions. However, for the less common variables (e.g., patients outside the endemic area), all available cases were included.</p>
</sec><sec id="s2c">
<title>Strains</title>
<p>The fungal isolates were cultured from different body sites, such as skin, eyes, nose, or cerebrospinal fluid. Each isolate was previously identified by classical microbiological phenotypic techniques as <italic>S. schenckii</italic> sensu lato. Additionally, control strains CBS 120339 (<italic>S. brasiliensis</italic>) <xref ref-type="bibr" rid="pntd.0003094-Marimon1">[4]</xref>, ATCC 16345 (<italic>S. schenckii</italic>), IPEC 27135 (<italic>S. globosa</italic>) <xref ref-type="bibr" rid="pntd.0003094-Oliveira1">[7]</xref>, and MUM 11.02 (<italic>S. mexicana</italic>) <xref ref-type="bibr" rid="pntd.0003094-Dias1">[9]</xref> were included in identification tests.</p>
</sec><sec id="s2d">
<title>Phenotypic Characterization</title>
<p>Filamentous fungal colonies for each isolate were grown on Sabouraud Dextrose Agar and slide cultures were mounted with Lactophenol Cotton Blue (Fluka Analyted, France) for <italic>Sporothrix</italic> identification <xref ref-type="bibr" rid="pntd.0003094-Marimon1">[4]</xref>. Dimorphism was demonstrated by conversion to the yeast-like form on Brain Heart Infusion Agar slants for 7 days at 37°C. Furthermore, colonies were sub-cultured on Potato Dextrose Agar plates and Corn Meal Agar slants, and incubated at 30 and 37°C in the dark to study fungal growth and sporulation respectively <xref ref-type="bibr" rid="pntd.0003094-Marimon1">[4]</xref>, <xref ref-type="bibr" rid="pntd.0003094-Oliveira2">[8]</xref>. Carbohydrate assimilation tests were performed using freshly prepared yeast nitrogen base (YNB) medium supplemented with sucrose or raffinose, using YNB supplemented with glucose as positive control and YNB without carbohydrates as a negative control. Experiments were performed at least three times on different days and, in the case of discordant results, repeated two additional times. All culture media were from Difco (Becton, Dickinson and Company/Sparks MD, USA). Results were interpreted according to the identification key detailed by Marimon and coworkers <xref ref-type="bibr" rid="pntd.0003094-Marimon2">[11]</xref>.</p>
</sec><sec id="s2e">
<title>Molecular Identification</title>
<p>Genomic DNA was extracted and purified from <italic>Sporothrix</italic> spp mycelial phase by chloroform/isoamyl alcohol method as described <xref ref-type="bibr" rid="pntd.0003094-Oliveira1">[7]</xref>. The gene encoding for the nuclear calmodulin was used for molecular differentiation of the isolates because this locus has a high number of parsimony informative sites, allowing <italic>Sporothrix</italic> differentiation in several genotypes <xref ref-type="bibr" rid="pntd.0003094-Marimon3">[18]</xref>. For partial sequencing of the nuclear calmodulin (CAL) gene, we used the primers CL1 (<named-content content-type="gene" xlink:type="simple">5′-GA(GA)T(AT)CAAGGAGGCCTTCTC-3′</named-content>), and CL2A (<named-content content-type="gene" xlink:type="simple">5′-TTTTTGCATCATGAGTTGGAC-3′</named-content>) under previously described conditions <xref ref-type="bibr" rid="pntd.0003094-Oliveira1">[7]</xref>. Automated sequencing was done using the Sequencing Platform at PDTIS/FIOCRUZ, Brazil <xref ref-type="bibr" rid="pntd.0003094-Otto1">[19]</xref>. Sequences from both DNA strands were generated and edited with the Sequencher ver. 4.6 software package (Genes Codes Corporation, USA), followed by alignment with Mega version 4.0.2 software. Our sequences were compared by BLAST (Basic Local Alignment Search Tool) with sequences available from NCBI GenBank (<italic>Sporothrix</italic> AM 398382.1/AM 398393.1/AM 117444.1/AM 116899.1/AM 116908.1). All phylogenetic analyses were performed as previously described <xref ref-type="bibr" rid="pntd.0003094-Oliveira1">[7]</xref>, <xref ref-type="bibr" rid="pntd.0003094-Oliveira2">[8]</xref>.</p>
</sec><sec id="s2f">
<title>Nucleotide Sequence Accession Numbers</title>
<p>All sequences from isolates included in genotypic analysis were deposited in the GenBank database under accession numbers GU456632, HQ426928 to HQ426962, and KC463890 to KC463903.</p>
</sec><sec id="s2g">
<title>Statistics</title>
<p>Data were processed and analyzed using the SPSS 17.0 software. Frequencies and median values were calculated for each group of this study.</p>
</sec></sec><sec id="s3">
<title>Results</title>
<sec id="s3a">
<title>Patients</title>
<p>Of the 50 patients, 16 were male and 34 female, with ages ranging from 9 to 83 years (median = 47). Lesions were located at upper limbs (n = 31, 62%), lower limbs (n = 6, 12%), face (n = 1, 2%), trunk (n = 1, 2%), and more than one segment (n = 11, 22%). Fifteen patients (30%) presented with a fixed cutaneous form, 24 (48%) lymphocutaneous form, 6 (12%) disseminated cutaneous form, and 5 (10%) disseminated (involving internal tissues) sporotrichosis. Additionally, six of these patients also presented with erythema nodosum and four with erythema multiforme. <xref ref-type="table" rid="pntd-0003094-t001">Table 1</xref> summarizes the clinical and mycological information for each patient.</p>
<table-wrap id="pntd-0003094-t001" position="float"><object-id pub-id-type="doi">10.1371/journal.pntd.0003094.t001</object-id><label>Table 1</label><caption>
<title>Clinical, epidemiological, and mycological aspects of 50 sporotrichosis cases.</title>
</caption><alternatives><graphic id="pntd-0003094-t001-1" position="float" mimetype="image" xlink:href="info:doi/10.1371/journal.pntd.0003094.t001" xlink:type="simple"/>
<table><colgroup span="1"><col align="left" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/></colgroup>
<thead>
<tr>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1"/>
<td colspan="3" align="left" rowspan="1">Genotypic characterization</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">Strain</td>
<td align="left" rowspan="1" colspan="1">Cat<xref ref-type="table-fn" rid="nt101">*</xref></td>
<td align="left" rowspan="1" colspan="1">Clinical form</td>
<td align="left" rowspan="1" colspan="1">Erythema</td>
<td align="left" rowspan="1" colspan="1">Treatment (weeks)</td>
<td align="left" rowspan="1" colspan="1">Phenotypic identification</td>
<td align="left" rowspan="1" colspan="1">Final identification</td>
<td align="left" rowspan="1" colspan="1">Genbank n°</td>
<td align="left" rowspan="1" colspan="1">References</td>
</tr>
</thead>
<tbody>
<tr>
<td align="left" rowspan="1" colspan="1">16490</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">13</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">AM116899</td>
<td align="left" rowspan="1" colspan="1">4</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">16919</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">16</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426930</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">17307</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Disseminated Cutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">20</td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">KC463892</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">17331</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Disseminated Cutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">36</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426929</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">17521</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">36</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1">KC463901</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">17585</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">24</td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1">KC463902</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">17786</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">36</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426931</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">17878</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1">EN<xref ref-type="table-fn" rid="nt102">a</xref></td>
<td align="left" rowspan="1" colspan="1">12</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426932</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">24372</td>
<td align="left" rowspan="1" colspan="1">No</td>
<td align="left" rowspan="1" colspan="1">Disseminated</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">44 (AIDS)</td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1">KC463903</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">25011</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1">EM<xref ref-type="table-fn" rid="nt103">b</xref></td>
<td align="left" rowspan="1" colspan="1">16</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426935</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">25303</td>
<td align="left" rowspan="1" colspan="1">No</td>
<td align="left" rowspan="1" colspan="1">Disseminated</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">260 (AIDS)</td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">KC463891</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">25374</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1">EN</td>
<td align="left" rowspan="1" colspan="1">Lost</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">KC463894</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">25457</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">Lost</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">KC463890</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">25521</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Disseminated</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">20</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426936</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">25758</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">16</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">KC463895</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">26611</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1">EM</td>
<td align="left" rowspan="1" colspan="1">16 (HIV)</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426937</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">26938</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">48</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426938</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">26945</td>
<td align="left" rowspan="1" colspan="1">No</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">14</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426939</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">26961</td>
<td align="left" rowspan="1" colspan="1">No</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">24</td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1">JN995605</td>
<td align="left" rowspan="1" colspan="1">34</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27022</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Disseminated Cutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">8</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426940</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27052</td>
<td align="left" rowspan="1" colspan="1">No</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1">EN</td>
<td align="left" rowspan="1" colspan="1">12</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426941</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27087</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">64</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426942</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27100</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">36</td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">JN995609</td>
<td align="left" rowspan="1" colspan="1">34</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27130</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">16</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426943</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27133</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">Lost</td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">JN995608</td>
<td align="left" rowspan="1" colspan="1">34</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27177</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">6</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426944</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27209</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">12</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426946</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27288</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">104</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426945</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27372</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1">EM</td>
<td align="left" rowspan="1" colspan="1">12</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426947</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27375</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1">EN</td>
<td align="left" rowspan="1" colspan="1">SR<xref ref-type="table-fn" rid="nt104">c</xref></td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">KC463898</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27387</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">12</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426948</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27417</td>
<td align="left" rowspan="1" colspan="1">No</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">16</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426949</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27445</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Disseminated Cutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">SR</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426950</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27454</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">22</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">KC463896</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27558</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">12</td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">KC463899</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27722</td>
<td align="left" rowspan="1" colspan="1">No</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">SR</td>
<td align="left" rowspan="1" colspan="1"><italic>S. mexicana</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426961</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">27930</td>
<td align="left" rowspan="1" colspan="1">No</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">10</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426951</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">28329</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">16</td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">JN995610</td>
<td align="left" rowspan="1" colspan="1">34</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">28403</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">10</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">KC463900</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">28487</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Disseminated Cutaneous</td>
<td align="left" rowspan="1" colspan="1">EN</td>
<td align="left" rowspan="1" colspan="1">16</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426928</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">28604</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">10</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426953</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">28665</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">SR</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">JN995606</td>
<td align="left" rowspan="1" colspan="1">34</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">28701</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Disseminated Cutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">20</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426954</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">28772</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">12</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426955</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">28790</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">4</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426956</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">28988</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1">EM</td>
<td align="left" rowspan="1" colspan="1">12</td>
<td align="left" rowspan="1" colspan="1"><italic>S. schenckii</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">KC463897</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">30650</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Disseminated</td>
<td align="left" rowspan="1" colspan="1">EN</td>
<td align="left" rowspan="1" colspan="1">16</td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">KC463893</td>
<td align="left" rowspan="1" colspan="1">This study</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">33605</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Disseminated</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">34 (AIDS)</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426957</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">33722</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Lymphocutaneous</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">12</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426958</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">34007</td>
<td align="left" rowspan="1" colspan="1">Yes</td>
<td align="left" rowspan="1" colspan="1">Fixed</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">Lost</td>
<td align="left" rowspan="1" colspan="1"><italic>Sporothrix spp.</italic></td>
<td align="left" rowspan="1" colspan="1"><italic>S. brasiliensis</italic></td>
<td align="left" rowspan="1" colspan="1">HQ426959</td>
<td align="left" rowspan="1" colspan="1">8</td>
</tr>
</tbody>
</table>
</alternatives><table-wrap-foot><fn id="nt101"><label/><p>*indicates exposure (Yes) or no exposure (No) to cats.</p></fn><fn id="nt102"><label>a</label><p>EN: erythema nodosum.</p></fn><fn id="nt103"><label>b</label><p>EM : erythema multiforme.</p></fn><fn id="nt104"><label>c</label><p>SR: spontaneous regression of lesions.</p></fn></table-wrap-foot></table-wrap></sec><sec id="s3b">
<title>Mycological and Phenotypic Identification</title>
<p>Of the 50 strains, 45 (90%) were classified by molecular methods as <italic>S. brasiliensis</italic> and 5 (10%) as <italic>S. schenckii</italic>. In 21 (42%) isolates, results from phenotypic tests were inconclusive, precluding species differentiation; these strains were phenotypically classified as <italic>Sporothrix</italic> spp. Interestingly, phenotypic identification of 10 (20%) isolates did not match to the genotypic results. Eight (16%) strains phenotypically classified as <italic>S. schenckii</italic>, DNA sequencing clustered them amid <italic>S. brasiliensis</italic>. The strain phenotypically classified as <italic>S. mexicana</italic> was genotypically identified as <italic>S. schenckii</italic>, and one <italic>S. brasiliensis</italic> was classified as <italic>S. schenckii</italic> by CAL sequencing.</p>
</sec><sec id="s3c">
<title>Mycological, Clinical and Epidemiological Data</title>
<p>Forty-two (93.3%) of the strains identified taxonomically as <italic>S. brasiliensis</italic> were from the Rio de Janeiro endemic area of sporotrichosis, including Rio de Janeiro city, Duque de Caxias, Belford Roxo, Sao João de Meriti, Nova Iguaçu, Nilópolis, and Mesquita (<xref ref-type="fig" rid="pntd-0003094-g001">Fig. 1</xref>). The other three (6.7%) <italic>S. brasiliensis</italic> strains were isolated from patients who lived in Teresópolis, a county 91 km away from Rio de Janeiro city. <italic>S. brasiliensis</italic> was isolated from 32 of 34 women (94%). Forty (88.9%) patients with <italic>S. brasiliensis</italic> had documented contacts with cats. Two additional <italic>S. brasiliensis</italic>-infected patients (4.4%) reported plant and glass trauma preceding the development of sporotrichosis.</p>
<fig id="pntd-0003094-g001" position="float"><object-id pub-id-type="doi">10.1371/journal.pntd.0003094.g001</object-id><label>Figure 1</label><caption>
<title>Map of Rio de Janeiro state, Brazil.</title>
<p>Names of the cities of origin of the 50 patients included in this study are indicated. Cities in gray, which comprise the Rio de Janeiro metropolitan area, are related to the zoonotic endemic area of sporotrichosis.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pntd.0003094.g001" position="float" xlink:type="simple"/></fig>
<p>With respect to the five patients with <italic>S. schenckii</italic>, four of them (80%) were isolated from patients who lived in three different rural regions and one urban area (in Itaboraí, Barra do Piraí, Casimiro de Abreu, and Teresópolis, respectively; 45, 100, 127, and 91 km away from Rio de Janeiro city), which are outside of the endemic area. <italic>S. schenckii</italic> was also isolated from a patient who lived within the zoonotic endemic sporotrichosis area in Rio de Janeiro. Three patients were male and two female.</p>
<p>Hypersensitivity reactions such as erythema nodosum or erythema multiforme (10 cases), disseminated cutaneous forms (6 cases), and all but one case of lymphocutaneous sporotrichosis were all attributed to infection with <italic>S. brasiliensis</italic>. Localized cutaneous forms were observed in patients infected with either <italic>S. brasiliensis</italic> (n = 12, 26.7%) or <italic>S. schenckii</italic> (n = 3, 60%). Disseminated disease occurred due to <italic>S. schenckii</italic> in one patient with AIDS, <italic>S. brasiliensis</italic> in two patients with AIDS, and <italic>S. brasiliensis</italic> in one patient without any history of immunosuppression. Finally, there was one case of fixed cutaneous sporotrichosis caused by <italic>S. brasiliensis</italic> in a HIV infected patient with CD4&gt;200 cells/µL.</p>
</sec><sec id="s3d">
<title>Response to Therapy</title>
<p>Four patients infected with <italic>S. brasiliensis</italic> were lost to follow-up. The three patients with AIDS and disseminated disease were excluded from analysis since they received amphotericin B as part of their antifungal regimen. Spontaneous regression was observed in one patient infected with <italic>S. schenckii</italic> (fixed form) and three with <italic>S. brasiliensis</italic> (two fixed and one disseminated cutaneous forms). The remaining 3 cases of <italic>S. schenckii</italic> required more than 24 weeks of itraconazole, and two of them required increased doses (200 and 400 mg/day). Most of the 35 patients infected by <italic>S. brasiliensis</italic> included in this analysis (82.9%) resolved with less than 24 weeks of treatment, regardless of their clinical form. For eight <italic>S. brasiliensis</italic>-infected patients, up to 400 mg/day itraconazole were necessary for clinical cure. The median time to cure for patients with hypersensitivity reactions was similar to the patients without these manifestations (16 weeks), and their diseases resolved with 100 mg/day of itraconazole.</p>
</sec></sec><sec id="s4">
<title>Discussion</title>
<p>The clinical presentations of sporotrichosis caused by <italic>Sporothrix spp</italic> are highly variable and poorly understood. Kong and collaborators <xref ref-type="bibr" rid="pntd.0003094-Kong1">[20]</xref> have demonstrated that <italic>S. schenckii</italic> genotypes can be correlated with clinical forms of disease, as mice challenged with <italic>S. schenckii</italic> isolates from patients with fixed cutaneous, lymphocutaneous or disseminated sporotrichosis developed more severe disease according to the severity of the manifestations in the originating patient. However, they did not define the relationships between genotype and treatment outcome or other unusual manifestations. In the present work, we show the direct association between unusual clinical presentations of human sporotrichosis with infection by <italic>S. brasiliensis</italic>. Although <italic>S. brasiliensis</italic> caused typical manifestations of fixed cutaneous and lymphocutaneous sporotrichosis, all 10 patients with hypersensitivity reactions and 6/7 patients with disseminated disease were infected with <italic>S. brasiliensis</italic>. To the best of our knowledge, this is the first work that demonstrates an association between genotypic identification of <italic>Sporothrix</italic> species and several clinical aspects of human sporotrichosis. Given the recent changes in the nomenclature and advances in the molecular taxonomy of <italic>Sporothrix</italic>, it is even more important to understand the clinical implications of these advances <xref ref-type="bibr" rid="pntd.0003094-deHoog1">[21]</xref>.</p>
<p>As expected, the majority of our isolates have been identified as <italic>S. brasiliensis</italic> by DNA analyses. Our group has previously characterized <italic>S. brasiliensis</italic> in 230 (93.5%) of 246 isolates obtained from this endemic zoonotic transmission area <xref ref-type="bibr" rid="pntd.0003094-Oliveira2">[8]</xref>. A study by Marimon and coworkers of 127 <italic>Sporothrix</italic> strains collected from several parts of the world reported only <italic>S. brasiliensis</italic> among the tested isolates from Rio de Janeiro <xref ref-type="bibr" rid="pntd.0003094-Marimon1">[4]</xref>. There are also a few reports of <italic>S. brasiliensis</italic> in Brazilian states other than Rio de Janeiro <xref ref-type="bibr" rid="pntd.0003094-Rodrigues1">[10]</xref>, <xref ref-type="bibr" rid="pntd.0003094-Oliveira3">[22]</xref>, <xref ref-type="bibr" rid="pntd.0003094-SilvaVergara1">[23]</xref>, but, in these states, the frequency of <italic>S. brasiliensis</italic> appears to be lower than that for the other <italic>Sporothrix</italic> species, with <italic>S. schenckii</italic> predominating <xref ref-type="bibr" rid="pntd.0003094-Oliveira3">[22]</xref>.</p>
<p>As noted above, <italic>S. brasiliensis</italic> genotype caused typical clinical forms of sporotrichosis (lymphocutaneous and fixed cutaneous). However, except for 1 case of disseminated <italic>S. schenckii</italic> in a patient with AIDS, all of the unusual clinical forms of sporotrichosis were attributed to infection with <italic>S. brasiliensis</italic>, including disseminated cutaneous sporotrichosis in the absence of an underlying immunosuppressive condition, mucosal involvement affecting nasal cavity or conjunctiva, and hypersensitivity reactions. Regarding the hypersensitivity manifestations, our finding are consistent with the previously reported cases of erythema nodosum and erythema multiforme associated with zoonotic sporotrichosis <xref ref-type="bibr" rid="pntd.0003094-GutierrezGalhardo2">[24]</xref>, <xref ref-type="bibr" rid="pntd.0003094-GutierrezGalhardo3">[25]</xref> due to <italic>S. brasiliensis</italic>. Recently, Sweet syndrome has also described in 3 patients with sporotrichosis <xref ref-type="bibr" rid="pntd.0003094-Freitas2">[26]</xref>, and studies are underway to determine, by calmodulin sequencing, the species involved in these cases.</p>
<p>Another interesting finding for disease due to <italic>S. brasiliensis</italic> is the 32/13 female/male ratio, since there is a predominance of male over female patients with sporotrichosis caused by <italic>S. schenckii</italic>. This can be explained by the fact that the most affected group in the endemic area of sporotrichosis in Rio de Janeiro are housewives that interact with or take care of <italic>S. brasiliensis</italic> infected cats <xref ref-type="bibr" rid="pntd.0003094-Barros1">[1]</xref>.</p>
<p>Barros and coworkers <xref ref-type="bibr" rid="pntd.0003094-Barros4">[27]</xref> studied the effects of itraconaozle treatment on cutaneous sporotrichosis in 645 patients from the Rio de Janeiro epidemic, including 87 patients with erythema nodosum or erythema multiforme. Interestingly, they observed that of the patients with hypersensitivity reactions resolved their disease more rapidly compared with patients without these conditions. Although our current study did not find differences regarding treatment between these groups, we did determine that most patients with hypersensitivity reactions presented with fixed cutaneous sporotrichosis. Hence, we believe that hypersensitivity reactions may indicate a robust host response to the <italic>S. brasiliensis</italic> yeast cells and play a protective role in sporotrichosis, as observed in coccidioidomycosis <xref ref-type="bibr" rid="pntd.0003094-Arsura1">[28]</xref>.</p>
<p>The small number of <italic>S. schenckii</italic> cases in our study calls our attention to the infection caused by this species in Rio de Janeiro. The majority of these cases occurred in rural counties where inhabitants are engaged in agricultural activities, and, therefore, they have frequent and protracted contact with soil. Moreover, in two of these cases, patients denied cat contact. However, <italic>S. schenckii</italic> was identified in one case from the endemic zoonotic transmission area. Our results suggest that <italic>S. schenckii</italic> also circulates, in minor proportions, in this endemic area. New studies with a large number of <italic>S. schenckii</italic> infected patients are necessary to verify the clinical meaningful of sporotrichosis caused by this species.</p>
<p>Several factors could influence the different outcomes of sporotrichosis, such as the size of initial inoculum, the host immune response status, depth of traumatic inoculation and fungal virulence <xref ref-type="bibr" rid="pntd.0003094-Carlos1">[29]</xref>. Virulence studies in a mouse infection model have shown that <italic>S. brasiliensis</italic> is significantly more lethal and results in higher fungal burdens compared to <italic>S. schenckii</italic> as well as other examined <italic>Sporothrix</italic> spp. <xref ref-type="bibr" rid="pntd.0003094-ArrillagaMoncrieff1">[30]</xref>. This same study concludes that lesional mechanisms could be species-specific, which supports our results. Zoonotic transmission of sporotrichosis by cats results in high <italic>Sporothrix</italic> inoculums for humans, since these animals have high fungal burdens <xref ref-type="bibr" rid="pntd.0003094-Schubach1">[31]</xref>. In some of the endemic sporotrichosis cases, fungal inoculation is presumably repetitive, due to constant bites and scratches suffered by owners <xref ref-type="bibr" rid="pntd.0003094-Schubach2">[32]</xref>. These factors, coupled with the purported higher virulence of <italic>S. brasiliensis</italic> <xref ref-type="bibr" rid="pntd.0003094-ArrillagaMoncrieff1">[30]</xref>, could account for the unusual and more severe clinical manifestations observed with this species.</p>
<p>Itraconazole is the drug of choice for sporotrichosis treatment <xref ref-type="bibr" rid="pntd.0003094-Barros4">[27]</xref>. It is interesting to note that, regardless the clinical form, there was a trend toward shorter treatment durations in patients with sporotrichosis caused by <italic>S. brasiliensis</italic>, (median = 16 weeks) than the cases due to <italic>S. schenckii</italic> (median = 24 weeks), for our study. Although we are comparing 46 cases of <italic>S. brasiliensis</italic> to only 4 infections due to <italic>S. schenckii</italic>, we propose that our finding might have a therapeutic implication. The response of <italic>S. brasiliensis</italic> to treatment is consistent with the fact that <italic>S. brasiliensis</italic> is more susceptible to antifungal drugs, such as itraconazole, posaconazole, and ravuconazole, than <italic>S. schenckii</italic> <xref ref-type="bibr" rid="pntd.0003094-Marimon4">[33]</xref>. Moreover, previous results of our group, which included eight <italic>S. brasiliensis</italic> from this study, showed that strains from the zoonotic endemic area were highly susceptible to itraconazole <xref ref-type="bibr" rid="pntd.0003094-GutierrezGalhardo1">[14]</xref>. Nevertheless, clinical, randomized studies should be performed to confirm these findings.</p>
<p>Since different <italic>Sporothrix</italic> species appear to be related to distinct clinical manifestations and treatment responses, we propose that speciation should become standard laboratory practice. However, it will require a significant effort to make this recommendation a reality in most clinical laboratories. Phenotypic fungal identification is easier than molecular methods to routinely apply. However, in the present work as well as in a previous study from our team <xref ref-type="bibr" rid="pntd.0003094-Oliveira2">[8]</xref> and studies from other groups <xref ref-type="bibr" rid="pntd.0003094-Rodrigues1">[10]</xref>, phenotypic description too often fails to be corroborated by genotypic results. Since the differences between the species of the <italic>S. schenckii</italic> complex were observed at the molecular level <xref ref-type="bibr" rid="pntd.0003094-Marimon3">[18]</xref>, we considered DNA sequencing as the gold standard on species identification for the present study. Unfortunately, at present, DNA sequencing is not a suitable methodology for routine clinical laboratories. We recently described a simple and reliable T3B DNA fingerprinting methodology to identify the <italic>S. schenckii</italic> species complex at the DNA level <xref ref-type="bibr" rid="pntd.0003094-Oliveira4">[34]</xref>, making it an alternative identification methodology for clinical microbiology laboratories.</p>
<p>Our study intended to perform a molecular analysis of the most peculiar clinical cases that we observed in this epidemic as well as typical cases, and also patients presenting from areas outside the sporotrichosis belt of zoonotic transmission, which corresponds to almost 20% of our stored samples. We have checked the medical data from the other 196 patients and they were very similar to the cases we included here. The small size of genotyped strains is a weakness of this study, but in our opinion, these cases illustrate the association of <italic>S. brasiliensis</italic> to the unusual presentations of sporotrichosis. Also, molecular genotyping with sequencing of the calmodulin gene is laborious and expensive (at present), with significant financial impact in our severely limited funding situation.</p>
<p>In conclusion, we have used molecular analysis to clearly demonstrate that <italic>S. brasiliensis</italic> is the primary cause of endemic sporotrichosis in Rio de Janeiro state. Moreover, <italic>S. brasiliensis</italic> causes both classic and unusual manifestations of sporotrichosis, including severe disease in otherwise immunocompetent individuals. We also have documented that local and invasive <italic>S. brasiliensis</italic> disease responds well to itraconazole therapy, with shorter durations of therapy compared to the patients studied with sporotrichosis caused by <italic>S. schenckii</italic>. This study adds new information to our knowledge base on <italic>S. brasiliensis</italic> disease and supports the careful speciation of <italic>Sporothrix</italic> isolates to guide clinical care.</p>
</sec><sec id="s5">
<title>Supporting Information</title>
<supplementary-material id="pntd.0003094.s001" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document" xlink:href="info:doi/10.1371/journal.pntd.0003094.s001" position="float" xlink:type="simple"><label>Checklist S1</label><caption>
<p>STROBE checklist.</p>
<p>(DOCX)</p>
</caption></supplementary-material></sec></body>
<back>
<ack>
<p>The authors thank Dr. Joshua Nosanchuk for his editorial assistance. Automated sequencing was done using the genomic platform/DNA sequencing platform at Fundação Oswaldo Cruz - PDTIS/FIOCRUZ (RPT01A), Brazil.</p>
</ack>
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