<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article
  PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="3.0" xml:lang="en">
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">PLoS ONE</journal-id>
<journal-id journal-id-type="publisher-id">plos</journal-id>
<journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group>
<journal-title>PLoS ONE</journal-title></journal-title-group>
<issn pub-type="epub">1932-6203</issn>
<publisher>
<publisher-name>Public Library of Science</publisher-name>
<publisher-loc>San Francisco, USA</publisher-loc></publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">PONE-D-13-44878</article-id>
<article-id pub-id-type="doi">10.1371/journal.pone.0090597</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Medicine</subject><subj-group><subject>Clinical genetics</subject></subj-group><subj-group><subject>Endocrinology</subject></subj-group><subj-group><subject>Metabolic disorders</subject></subj-group><subj-group><subject>Non-clinical medicine</subject></subj-group></subj-group></article-categories>
<title-group>
<article-title><italic>GRK5</italic> Intronic (CA)<sub>n</sub> Polymorphisms Associated with Type 2 Diabetes in Chinese Hainan Island</article-title>
<alt-title alt-title-type="running-head"><italic>GRK5</italic> Intronic (CA)n Polymorphisms and T2DM</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Xia</surname><given-names>Zhenfang</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Yang</surname><given-names>Tubao</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Wang</surname><given-names>Zhuansuo</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Dong</surname><given-names>Jianping</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Liang</surname><given-names>Chunyan</given-names></name><xref ref-type="aff" rid="aff4"><sup>4</sup></xref></contrib>
</contrib-group>
<aff id="aff1"><label>1</label><addr-line>Division of Health Statistics, School of Public Health, Central South University, City of Changsha, Province Hunan, China</addr-line></aff>
<aff id="aff2"><label>2</label><addr-line>Department of Endocrinology, the Affiliated Hospital of Hainan Medical College, City of Haikou, Province Hainan, China</addr-line></aff>
<aff id="aff3"><label>3</label><addr-line>Transgenic Laboratory, Hainan Medical College, City of Haikou, Province Hainan, China</addr-line></aff>
<aff id="aff4"><label>4</label><addr-line>Outpatients Department, Community Health Service Center of Xiuying, City of Haikou, Province Hainan, China</addr-line></aff>
<contrib-group>
<contrib contrib-type="editor" xlink:type="simple"><name name-style="western"><surname>Randeva</surname><given-names>Harpal Singh</given-names></name>
<role>Editor</role>
<xref ref-type="aff" rid="edit1"/></contrib>
</contrib-group>
<aff id="edit1"><addr-line>University of Warwick – Medical School, United Kingdom</addr-line></aff>
<author-notes>
<corresp id="cor1">* E-mail: <email xlink:type="simple">1064960669@qq.com</email></corresp>
<fn fn-type="conflict"><p>The authors have declared that no competing interests exist.</p></fn>
<fn fn-type="con"><p>Conceived and designed the experiments: TBY. Performed the experiments: ZFX JPD CYL. Analyzed the data: ZFX. Contributed reagents/materials/analysis tools: ZSW JPD. Wrote the paper: ZFX. Revised the manuscript: TBY ZFX.</p></fn>
</author-notes>
<pub-date pub-type="collection"><year>2014</year></pub-date>
<pub-date pub-type="epub"><day>3</day><month>3</month><year>2014</year></pub-date>
<volume>9</volume>
<issue>3</issue>
<elocation-id>e90597</elocation-id>
<history>
<date date-type="received"><day>27</day><month>10</month><year>2013</year></date>
<date date-type="accepted"><day>1</day><month>2</month><year>2014</year></date>
</history>
<permissions>
<copyright-year>2014</copyright-year>
<copyright-holder>Xia et al</copyright-holder><license xlink:type="simple"><license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/" xlink:type="simple">Creative Commons Attribution License</ext-link>, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p></license></permissions>
<abstract>
<p>A genome-wide association study had showed G-protein–coupled receptor kinase 5 (<italic>GRK5</italic>) rs10886471 was related to the risk of type 2 diabetes mellitus (T2DM) through upregulated <italic>GRK5</italic> mRNA expression. Rs10886471 is located in the intron region of <italic>GRK5</italic>. However, the mechanism by which intronic SNP affects gene expression remains unclear, whether the effect on gene expression depends on the intronic short tandem repeat (STR) (CA)<italic><sub>n</sub></italic> splicing regulator or not. Here we investigated the STR (CA)<italic><sub>n</sub></italic> polymorphism in rs10886471 and further discussed its role in the T2DM risk of Chinese Hainan Island individuals. A total of 1164 subjects were recruited and classified into a normal fasting glucose (NFG) group, an impaired fasting glucose (IFG) group, an impaired glucose tolerance (IGT) group, and a T2DM group. STR (CA)<italic><sub>n</sub></italic> polymorphisms were detected through polymerase chain reaction and sequencing. Five intronic (CA)<italic><sub>n</sub></italic> alleles, (CA)<italic><sub>15</sub></italic> to (CA)<italic><sub>19</sub></italic>, were identified in <italic>GRK5</italic> rs10886471. Only the (CA)<italic><sub>16</sub></italic> allele was significantly associated with increased prediabetes and T2DM risk [odds ratio (OR)&gt;1, <italic>P</italic>&lt;0.05]. Conversely, multiple alleles without any (CA)<italic><sub>16</sub></italic> protected against prediabetes and T2DM (0&lt;OR&lt;1, <italic>P</italic>&lt;0.05). In summary, rs10886471 acts as both an SNP and an STR. The rs10886471 intronic SNP causes <italic>GRK5</italic> overexpression the subsequent risk of T2DM may be due to the rs10886471 intronic STR (CA)<italic><sub>n</sub></italic> splicing enhancer. Further studies should focus on verifying these finding using a large sample size and analyzing the splicing mechanism of intronic (CA)<italic><sub>n</sub></italic> in rs10886471.</p>
</abstract>
<funding-group><funding-statement>The authors have no support or funding to report.</funding-statement></funding-group><counts><page-count count="6"/></counts></article-meta>
</front>
<body><sec id="s1">
<title>Introduction</title>
<p>Type 2 diabetes mellitus (T2DM) is one of the most common diseases; it has a high incidence, numerous complications, high disability rate, low awareness rate, and heavy economic burden. Many countries pay heavy costs for T2DM every year<xref ref-type="bibr" rid="pone.0090597-Ginter1">[1]</xref>. Although the genetic heterogeneity of T2DM is associated with genetic and environmental factors, genetic polymorphism and susceptibility to T2DM remain largely unknown. About 20 genes and 60 genetic loci have been linked to T2DM susceptibility<xref ref-type="bibr" rid="pone.0090597-Lin1">[2]</xref>, <xref ref-type="bibr" rid="pone.0090597-Li1">[3]</xref>, <xref ref-type="bibr" rid="pone.0090597-Tariq1">[4]</xref>, <xref ref-type="bibr" rid="pone.0090597-Yilmaz1">[5]</xref>, <xref ref-type="bibr" rid="pone.0090597-Yin1">[6]</xref>. A recent study indicated that the T2DM susceptibility of Chinese Han populations, including East Asian populations, is significantly higher than those of Western populations. This increased T2DM susceptibility has been associated with G-protein–coupled receptor kinase 5 (<italic>GRK5</italic>) rs10886471, which is endemic to East Asian populations<xref ref-type="bibr" rid="pone.0090597-Li1">[3]</xref>, <xref ref-type="bibr" rid="pone.0090597-Dou1">[7]</xref>. The cis-expression quantitative loci (cis-eQTL) analysis and quantitative real-time RT-PCR showed that the rs10886471 SNP allele changes the transcription level of the <italic>GRK5</italic> gene<xref ref-type="bibr" rid="pone.0090597-Li1">[3]</xref>, <xref ref-type="bibr" rid="pone.0090597-Yilmaz1">[5]</xref>, but the mechanism remains unclear. Non-coding microsatellite polymorphism could act as a functional unit and interact with promoter SNPs during transcription regulation<xref ref-type="bibr" rid="pone.0090597-Chen1">[8]</xref>. The rs10886471 is located in the intron region of <italic>GRK5</italic>. However, whether the effect on the gene expression of rs10886471 intronic SNP depends on the intronic (CA)<italic><sub>n</sub></italic> splicing regulator should be studied. We first report an intronic (CA)<italic><sub>n</sub></italic> repeat polymorphism in <italic>GRK5</italic> rs10886471 and susceptibility to T2DM.</p>
</sec><sec id="s2" sec-type="methods">
<title>Methods</title>
<sec id="s2a">
<title>Subjects</title>
<p>The inclusion criterion for subjects was age ranging from 35 years to 85 years old. The exclusion criteria were as follows: type 1 diabetes, recent acute disease, chronic inflammatory disease, infectious disease, and metabolic disease other than prediabetes and diabetes. Prediabetes and diabetes were diagnosed according to the diagnostic criteria<xref ref-type="bibr" rid="pone.0090597-World1">[9]</xref>. The adult community residents (n = 1164, 584 men and 580 women) were recruited from Haikou City on Hainan Island from March 2011 to September 2011 using a multistage stratified cluster sampling design. The following clinical characteristics and information were recorded for each subject: age, gender, body mass index (BMI), systolic blood pressure (SBP), diastolic blood pressure (DBP), fasting plasma glucose (FPG), and 2-hour plasma glucose(2 h PG) in the oral glucose tolerance test (OGTT). The subjects were assigned into four groups based on blood glucose level: normal fasting glucose (NFG) group (n = 282), impaired fasting glucose (IFG) group (n = 287), impaired glucose tolerance (IGT) group (n = 293), and T2DM group (n = 302). The age composition did not differ by more than 5 years, and the gender composition ratio did not differ by more than 5%. Physical examination and blood biochemical testing were conducted for all subjects. GRK5 rs10886471 (CA)n polymorphism experiments were also performed from October 2011 to March 2013 as follow-up tests. Our study was considered and approved by Hainan medical ehtics committee on January 2011. Our study began after all participants provided written informed consent.</p>
</sec><sec id="s2b">
<title>Microsatellite polymorphisms detection</title>
<p>Genomic DNA was extracted from the peripheral blood using a BloodGen Mini kit (CWBiotech, Beijing, China). Microsatellite polymorphism was identified via PCR and sequencing. The primers were designed to amplify the 320 bp region of <italic>GRK5</italic> rs10886471. Information on the rs10886471 sequence is available online (<ext-link ext-link-type="uri" xlink:href="http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=10886471#fasta" xlink:type="simple">http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=10886471#fasta</ext-link>). The forward primer was 5′-aagttcttccctgctagagaa-3′ and the reverse primer was 5′-ctctttttgttctaagtgaaaac-3′. PCR was performed under the following conditions: initial denaturation at 94°C for 5 min; followed by 33 cycles of denaturation at 94°C for 1 min, annealing at 53°C for 1 min, and extension at 72°C for 1 min; and a final extension at 72°C for 7 min. The reaction was performed at a final volume of 50 µl, which contained the basic reaction components. The PCR products were verified via 2.0% agarose gel electrophoresis and purified using a Quick Gel Extraction Kit (CWBiotech, Beijing, China). The purified PCR products were directly sequenced or ligated into a pGEM-T Easy Vector sequence (Shanghai Sangon Biotech Co. Ltd, China). The sequencing results were aligned with the intron region of the <italic>GRK5</italic> gene from GenBank (NM_005308.2) and were analyzed using the BioEdit software. Standard procedures and the latest scientific test specifications were strictly followed. Two people independently counted the alleles and discrepancies between the two examiners were resolved through repeat examinations of the samples.</p>
</sec><sec id="s2c">
<title>Statistical analysis</title>
<p>The microsatellite polymorphism was analyzed using the SSRHunter genetic profiler software. The (CA)<italic><sub>n</sub></italic> allelic frequencies were estimated through direct gene counting. Polymorphism information content (PIC) was calculated using the PIC-Calc0.6 software. A Pearson's chi-square test was used to count the variables and an ANOVA was used for mean comparisons. Forward stepwise regression was used for multivariate logistic regression analysis to estimate the strength of the associations of <italic>GRK5</italic> polymorphism with prediabetes and with T2DM. SPSS v17.0 was used for all statistical analysis. Differences with p values &lt;0.05 were considered statistically significant, and all <italic>p</italic> values are two tailed.</p>
</sec></sec><sec id="s3">
<title>Results</title>
<sec id="s3a">
<title>General data</title>
<p><xref ref-type="table" rid="pone-0090597-t001"><bold>Table 1</bold></xref> summarizes the clinical characteristics and biochemical results of the subjects. The four groups did not significantly differ in terms of age and gender (<italic>P</italic>&gt;0.05). However, waist circumference, BMI, SBP, DBP, FPG, and 2 h PG increased with the abnormal increase in blood glucose (IFG and IGT groups) and continued to increase with the blood sugar until it reached T2DM levels. The clinical parameters significantly differed between the four groups (all <italic>P</italic>&lt;0.05).</p>
<table-wrap id="pone-0090597-t001" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0090597.t001</object-id><label>Table 1</label><caption>
<title>Clinical characteristics of the study subjects.</title>
</caption><alternatives><graphic id="pone-0090597-t001-1" position="float" mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0090597.t001" xlink:type="simple"/>
<table><colgroup span="1"><col align="left" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/></colgroup>
<thead>
<tr>
<td align="left" rowspan="1" colspan="1">Parameters</td>
<td align="left" rowspan="1" colspan="1">NFG</td>
<td align="left" rowspan="1" colspan="1">IFG</td>
<td align="left" rowspan="1" colspan="1">IGT</td>
<td align="left" rowspan="1" colspan="1">T2DM</td>
<td align="left" rowspan="1" colspan="1"><italic>P</italic> <sup>a</sup></td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">(n = 282)</td>
<td align="left" rowspan="1" colspan="1">(n = 287)</td>
<td align="left" rowspan="1" colspan="1">(n = 293)</td>
<td align="left" rowspan="1" colspan="1">(n = 302)</td>
<td align="left" rowspan="1" colspan="1"/>
</tr>
</thead>
<tbody>
<tr>
<td align="left" rowspan="1" colspan="1">Gender</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1"/>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">Male</td>
<td align="left" rowspan="1" colspan="1">136 (48.23)</td>
<td align="left" rowspan="1" colspan="1">148 (51.57)</td>
<td align="left" rowspan="1" colspan="1">153 (52.22)</td>
<td align="left" rowspan="1" colspan="1">147 (48.68)</td>
<td align="left" rowspan="1" colspan="1">0.703</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">Female</td>
<td align="left" rowspan="1" colspan="1">146 (51.77)</td>
<td align="left" rowspan="1" colspan="1">139 (48.43)</td>
<td align="left" rowspan="1" colspan="1">140 (47.78)</td>
<td align="left" rowspan="1" colspan="1">155 (51.32)</td>
<td align="left" rowspan="1" colspan="1"/>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">Age</td>
<td align="left" rowspan="1" colspan="1">63±3.51</td>
<td align="left" rowspan="1" colspan="1">67±2.72</td>
<td align="left" rowspan="1" colspan="1">69±3.86</td>
<td align="left" rowspan="1" colspan="1">68±1.99</td>
<td align="left" rowspan="1" colspan="1">0.992</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">Waist (m)</td>
<td align="left" rowspan="1" colspan="1">0.51±0.01</td>
<td align="left" rowspan="1" colspan="1">0.55±0.01</td>
<td align="left" rowspan="1" colspan="1">0.61±0.01</td>
<td align="left" rowspan="1" colspan="1">0.63±0.01</td>
<td align="left" rowspan="1" colspan="1">0.000</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">BMI (kg/m<sup>2</sup>)</td>
<td align="left" rowspan="1" colspan="1">20.79±1.30</td>
<td align="left" rowspan="1" colspan="1">23.37±0.44</td>
<td align="left" rowspan="1" colspan="1">27.18±0.47</td>
<td align="left" rowspan="1" colspan="1">26.35±0.42</td>
<td align="left" rowspan="1" colspan="1">0.000</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">SBP (mmHg)</td>
<td align="left" rowspan="1" colspan="1">110.12±5.82</td>
<td align="left" rowspan="1" colspan="1">119.59±2.90</td>
<td align="left" rowspan="1" colspan="1">125.47±2.1</td>
<td align="left" rowspan="1" colspan="1">128.51±3.79</td>
<td align="left" rowspan="1" colspan="1">0.001</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">DBP (mmHg)</td>
<td align="left" rowspan="1" colspan="1">72.39±4.32</td>
<td align="left" rowspan="1" colspan="1">90.11±2.79</td>
<td align="left" rowspan="1" colspan="1">99.91±2.7</td>
<td align="left" rowspan="1" colspan="1">102.89±2.15</td>
<td align="left" rowspan="1" colspan="1">0.000</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">FPG (mmol/L)</td>
<td align="left" rowspan="1" colspan="1">4.63±0.83</td>
<td align="left" rowspan="1" colspan="1">6.45±0.29</td>
<td align="left" rowspan="1" colspan="1">6.51±0.23</td>
<td align="left" rowspan="1" colspan="1">7.60±0.65</td>
<td align="left" rowspan="1" colspan="1">0.001</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">2 h PG (mmol/L)</td>
<td align="left" rowspan="1" colspan="1">5.09±1.37</td>
<td align="left" rowspan="1" colspan="1">6.49±0.65</td>
<td align="left" rowspan="1" colspan="1">8.76±1.23</td>
<td align="left" rowspan="1" colspan="1">12.08±0.59</td>
<td align="left" rowspan="1" colspan="1">0.000</td>
</tr>
</tbody>
</table>
</alternatives><table-wrap-foot><fn id="nt101"><label/><p>Gender is expressed as n (%). All other parameters are expressed as mean ± S.D. BMI, body mass index; SBP, systolic blood pressure; DBP, diastolic blood pressure; FPG, fasting plasma glucose; 2 h PG, 2-hour plasma glucose in the OGTT. <bold><sup>a</sup></bold> Comparison of four groups via analysis of variance (continuous variables) or χ<sup>2</sup>-test (count variables).</p></fn></table-wrap-foot></table-wrap></sec><sec id="s3b">
<title>(CA)n polymorphism in rs10886471</title>
<p>CA repeat sequences are abundant in the human genome. Numerous studies have revealed that intronic (CA)<italic><sub>n</sub></italic> repeats could play a novel and generally important role in the splicing of enhancers or repressors during gene expression<xref ref-type="bibr" rid="pone.0090597-Hui1">[10]</xref>, <xref ref-type="bibr" rid="pone.0090597-Hamilton1">[11]</xref>, <xref ref-type="bibr" rid="pone.0090597-Zhang1">[12]</xref>, <xref ref-type="bibr" rid="pone.0090597-Wang1">[13]</xref>. Therefore, we extended the rs10886471 SNP analysis to study the short tandem repeat (STR) function. Genomic DNA from 1164 subjects was amplified via PCR and sequenced using primers specific for the rs10886471 studied region (about 320 bp) as shown in <xref ref-type="fig" rid="pone-0090597-g001"><bold>Figure 1</bold></xref> and <xref ref-type="fig" rid="pone-0090597-g002"><bold>2</bold></xref>).</p>
<fig id="pone-0090597-g001" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0090597.g001</object-id><label>Figure 1</label><caption>
<title>Intronic (CA)<italic>n</italic> polymorphism in <italic>GRK5</italic> rs10886471.</title>
<p>(A) Amplified fragments in the <italic>GRK5</italic> rs10886471 studied region. The PCR products were electrophoresed in 2% agarose gel and were then photographed under UV light. Bands 1–12 were from the NFG group, bands 13–24 from were from the IFG group, bands 25–36 were from the IGT group, and bands 37–48 were from the T2DM group. The PCR marker was in lane M. (B) SNPSTR marker in <italic>GRK5</italic> rs10886471. PCR sequencing demonstrated a STR (CA)<italic><sub>n</sub></italic> with one tightly linked SNP (C/T) in <italic>GRK5</italic> rs10886471. (C) Sequence analysis using the physical map of <italic>GRK5</italic> rs10886471. The SNPSTR marker is located in the intron of <italic>GRK5</italic> rs10886471.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0090597.g001" position="float" xlink:type="simple"/></fig><fig id="pone-0090597-g002" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0090597.g002</object-id><label>Figure 2</label><caption>
<title>Detection of (CA)<italic><sub>n</sub></italic> alleles in <italic>GRK5</italic> rs10886471.</title>
<p>The allelic length of the (CA)<italic><sub>n</sub></italic> repeats ranged from 15 to 19, as determined by automated fluorescence-based PCR sequencing.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0090597.g002" position="float" xlink:type="simple"/></fig></sec><sec id="s3c">
<title>(CA)n allelic frequencies of rs10886471</title>
<p>The allelic frequencies are listed in <xref ref-type="fig" rid="pone-0090597-g003"><bold>Figure 3</bold></xref> and <xref ref-type="table" rid="pone-0090597-t002"><bold>Table 2</bold></xref>, (CA)<italic><sub>17</sub></italic> had the highest allelic frequency in each group, followed (CA)<italic><sub>16</sub></italic>. However, the allelic frequencies of (CA)<italic><sub>16</sub></italic> and (CA)<italic><sub>17</sub></italic> were lower in the NFG group than in the IFG, IGT, and T2DM groups. The allelic frequencies of (CA)<sub>15</sub>, (CA)<italic><sub>18</sub></italic>, and (CA)<italic><sub>19</sub></italic> in the NFG group were higher than those in the IFG, IGT, and T2DM groups. The allelic frequency of (CA)<italic><sub>16</sub></italic> was significantly lower than that of (CA)<italic><sub>17</sub></italic>, but significantly higher than those of (CA)<italic><sub>18</sub></italic> and (CA)<italic><sub>19</sub></italic> among the four groups (χ<sup>2</sup> = 16.190, <italic>P</italic> = 0.001; χ<sup>2</sup> = 10.221, <italic>P</italic> = 0.017; and χ<sup>2</sup> = 8.265, <italic>P</italic> = 0.041, respectively). The allelic frequency distributions of (CA)<italic><sub>15</sub></italic>, (CA)<italic><sub>17</sub></italic>, (CA)<italic><sub>18</sub></italic>, and (CA)<italic><sub>19</sub></italic> did not significant differ among the four groups [(CA)<italic><sub>15</sub></italic> (χ<sup>2</sup> = 0.570, <italic>P</italic> = 0.903); (CA)<italic><sub>17</sub></italic> (χ<sup>2</sup> = 6.096, <italic>P</italic> = 0.107); (CA)<italic><sub>18</sub></italic> (χ<sup>2</sup> = 1.368, <italic>P</italic> = 0.713); (CA)<italic><sub>19</sub></italic> (χ<sup>2</sup> = 3.889, <italic>P</italic> = 0.274), respectively]. By contrast, the frequency of (CA)<italic><sub>16</sub></italic> increased with the abnormally increasing blood glucose (IFG and IGT groups) and continued to increase with blood sugar until it reached T2DM levels. The allelic frequencies of (CA)<italic><sub>16</sub></italic> in the IFG, IGT, and T2DM groups were much higher than in the NFG group (χ<sup>2</sup> = 12.300, <italic>P</italic> = 0.000; χ<sup>2</sup> = 13.672, <italic>P</italic> = 0.000; χ<sup>2</sup> = 14.476, <italic>P</italic> = 0.000, respectively).</p>
<fig id="pone-0090597-g003" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0090597.g003</object-id><label>Figure 3</label><caption>
<title>Frequency distribution of rs10886471 (CA)<italic><sub>n</sub></italic> alleles in the four groups.</title>
<p>Not all comparisons are shown. The allelic frequencies of (CA)<italic><sub>16</sub></italic> in the IFG, IGT, and T2DM groups wasmuch higher than that in the NFG group (<sup>△</sup><bold>X</bold><bold><sup>2</sup></bold> = 12.300, <italic>P</italic> = 0.000; <sup>□</sup><bold>X</bold><bold><sup>2</sup></bold> = 13.672, <italic>P</italic> = 0.000;<sup>▪</sup> <bold>X</bold><bold><sup>2</sup></bold> = 14.476,<italic>P</italic> = 0.000, respectively). The allelic frequency of (CA)<italic><sub>16</sub></italic> was significantly lower than that of (CA)<italic><sub>17</sub></italic>, but higher than those of (CA)<italic><sub>18</sub></italic> and (CA)<italic><sub>19</sub></italic> among the four groups (<sup>△△</sup><bold>X</bold><bold><sup>2</sup></bold> = 16.190, <italic>P</italic> = 0.001; <sup>□□</sup><bold>X</bold><bold><sup>2</sup></bold> = 10.221,<italic>P</italic> = 0.017; <sup>▪▪</sup><bold>X</bold><bold><sup>2</sup></bold> = 8.265, <italic>P</italic> = 0.041, respectively).</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0090597.g003" position="float" xlink:type="simple"/></fig><table-wrap id="pone-0090597-t002" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0090597.t002</object-id><label>Table 2</label><caption>
<title>Association of GRK5 intronic (CA)<sub>n</sub> repeat polymorphisms with prediabetes and T2DM (n = 1164).</title>
</caption><alternatives><graphic id="pone-0090597-t002-2" position="float" mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0090597.t002" xlink:type="simple"/>
<table><colgroup span="1"><col align="left" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/><col align="center" span="1"/></colgroup>
<thead>
<tr>
<td align="left" rowspan="1" colspan="1">Allele</td>
<td align="left" rowspan="1" colspan="1">NFG</td>
<td colspan="4" align="left" rowspan="1">IFG</td>
<td colspan="4" align="left" rowspan="1">IGT</td>
<td colspan="4" align="left" rowspan="1">T2DM</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">n</td>
<td align="left" rowspan="1" colspan="1">n</td>
<td align="left" rowspan="1" colspan="1">?<sup>2</sup></td>
<td align="left" rowspan="1" colspan="1">OR (95% CI)</td>
<td align="left" rowspan="1" colspan="1"><italic>P</italic></td>
<td align="left" rowspan="1" colspan="1">n</td>
<td align="left" rowspan="1" colspan="1">?<sup>2</sup></td>
<td align="left" rowspan="1" colspan="1">OR (95% CI)</td>
<td align="left" rowspan="1" colspan="1"><italic>P</italic></td>
<td align="left" rowspan="1" colspan="1">n</td>
<td align="left" rowspan="1" colspan="1">?<sup>2</sup></td>
<td align="left" rowspan="1" colspan="1">OR (95% CI)</td>
<td align="left" rowspan="1" colspan="1"><italic>P</italic></td>
</tr>
</thead>
<tbody>
<tr>
<td align="left" rowspan="1" colspan="1">(CA)<italic><sub>17</sub></italic> <xref ref-type="table-fn" rid="nt102">a</xref></td>
<td align="left" rowspan="1" colspan="1">150</td>
<td align="left" rowspan="1" colspan="1">129</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">1.000</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">130</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">1.000</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">136</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">1.000</td>
<td align="left" rowspan="1" colspan="1"/>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">(CA)<italic><sub>15</sub></italic></td>
<td align="left" rowspan="1" colspan="1">18</td>
<td align="left" rowspan="1" colspan="1">15</td>
<td align="left" rowspan="1" colspan="1">0.015</td>
<td align="left" rowspan="1" colspan="1">0.955(0.463–1.971)</td>
<td align="left" rowspan="1" colspan="1">0.901</td>
<td align="left" rowspan="1" colspan="1">15</td>
<td align="left" rowspan="1" colspan="1">0.015</td>
<td align="left" rowspan="1" colspan="1">0.955(0.463–1.971)</td>
<td align="left" rowspan="1" colspan="1">0.901</td>
<td align="left" rowspan="1" colspan="1">16</td>
<td align="left" rowspan="1" colspan="1">0.005</td>
<td align="left" rowspan="1" colspan="1">0.974(0.478–1.986)</td>
<td align="left" rowspan="1" colspan="1">0.942</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">(CA)<italic><sub>16</sub></italic></td>
<td align="left" rowspan="1" colspan="1">55</td>
<td align="left" rowspan="1" colspan="1">93</td>
<td align="left" rowspan="1" colspan="1">10.102</td>
<td align="left" rowspan="1" colspan="1">1.938(1.289–2.915)</td>
<td align="left" rowspan="1" colspan="1">0.001</td>
<td align="left" rowspan="1" colspan="1">97</td>
<td align="left" rowspan="1" colspan="1">11.547</td>
<td align="left" rowspan="1" colspan="1">2.021(1.347–3.034)</td>
<td align="left" rowspan="1" colspan="1">0.001</td>
<td align="left" rowspan="1" colspan="1">101</td>
<td align="left" rowspan="1" colspan="1">11.595</td>
<td align="left" rowspan="1" colspan="1">2.012(1.345–3.009)</td>
<td align="left" rowspan="1" colspan="1">0.001</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">(CA)<italic><sub>18</sub></italic></td>
<td align="left" rowspan="1" colspan="1">54</td>
<td align="left" rowspan="1" colspan="1">49</td>
<td align="left" rowspan="1" colspan="1">0.029</td>
<td align="left" rowspan="1" colspan="1">1.04(0.661–1.635)</td>
<td align="left" rowspan="1" colspan="1">0.865</td>
<td align="left" rowspan="1" colspan="1">49</td>
<td align="left" rowspan="1" colspan="1">0.029</td>
<td align="left" rowspan="1" colspan="1">1.04(0.661–1.635)</td>
<td align="left" rowspan="1" colspan="1">0.865</td>
<td align="left" rowspan="1" colspan="1">47</td>
<td align="left" rowspan="1" colspan="1">0.042</td>
<td align="left" rowspan="1" colspan="1">0.954(0.605–1.503)</td>
<td align="left" rowspan="1" colspan="1">0.838</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">(CA)<italic><sub>19</sub></italic></td>
<td align="left" rowspan="1" colspan="1">5</td>
<td align="left" rowspan="1" colspan="1">1</td>
<td align="left" rowspan="1" colspan="1">1.787</td>
<td align="left" rowspan="1" colspan="1">0.229(0.026–1.987)</td>
<td align="left" rowspan="1" colspan="1">0.181</td>
<td align="left" rowspan="1" colspan="1">2</td>
<td align="left" rowspan="1" colspan="1">0.851</td>
<td align="left" rowspan="1" colspan="1">0.458(0.087–2.403)</td>
<td align="left" rowspan="1" colspan="1">0.356</td>
<td align="left" rowspan="1" colspan="1">2</td>
<td align="left" rowspan="1" colspan="1">0.953</td>
<td align="left" rowspan="1" colspan="1">0.438(0.084–2.296)</td>
<td align="left" rowspan="1" colspan="1">0.329</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">(CA)<italic><sub>16</sub></italic> <xref ref-type="table-fn" rid="nt102">a</xref></td>
<td align="left" rowspan="1" colspan="1">55</td>
<td align="left" rowspan="1" colspan="1">93</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">1.000</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">97</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">1.000</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">101</td>
<td align="left" rowspan="1" colspan="1"/>
<td align="left" rowspan="1" colspan="1">1.000</td>
<td align="left" rowspan="1" colspan="1"/>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1">Lacking (CA)<italic><sub>16</sub></italic> allele <sup>b</sup></td>
<td align="left" rowspan="1" colspan="1">227</td>
<td align="left" rowspan="1" colspan="1">194</td>
<td align="left" rowspan="1" colspan="1">11.761</td>
<td align="left" rowspan="1" colspan="1">0.51(0.347–0.75)</td>
<td align="left" rowspan="1" colspan="1">0.001</td>
<td align="left" rowspan="1" colspan="1">196</td>
<td align="left" rowspan="1" colspan="1">13.252</td>
<td align="left" rowspan="1" colspan="1">0.492(0.336–0.721)</td>
<td align="left" rowspan="1" colspan="1">0.001</td>
<td align="left" rowspan="1" colspan="1">201</td>
<td align="left" rowspan="1" colspan="1">14.024</td>
<td align="left" rowspan="1" colspan="1">0.484(0.331–0.708)</td>
<td align="left" rowspan="1" colspan="1">0.000</td>
</tr>
</tbody>
</table>
</alternatives><table-wrap-foot><fn id="nt102"><label>a</label><p>Reference allele; <bold><sup>b</sup></bold>Lacking the (CA)<italic><sub>16</sub></italic> allele and contains (CA)<italic><sub>15</sub></italic>, (CA)<italic><sub>17</sub></italic>,(CA)<italic><sub>18</sub></italic>, and (CA)<italic><sub>19</sub></italic>; OR, odds ratio; 95%CI, 95% confidence interval.</p></fn></table-wrap-foot></table-wrap></sec><sec id="s3d">
<title>The PIC values of the rs10886471 (CA)n alleles</title>
<p>The PIC values of the rs10886471 (CA)<italic><sub>n</sub></italic> alleles in the NFG, IFG, IGT, and T2DM groups were 0.6146, 0.6233, 0.6291, and 0.6327, respectively. The PICs of the four groups all exceeded 0.5, which indicates that the <italic>GRK5</italic> (CA)<italic><sub>n</sub></italic> repeats exhibited genetic polymorphism. The PIC of each group did not significantly deviate from the Hardy–Weinberg equilibrium.</p>
</sec><sec id="s3e">
<title>Association of GRK5 (CA)n polymorphisms with prediabetes and T2DM</title>
<p>Logistic regression analysis was conducted on the alleles and the results are presented in <xref ref-type="table" rid="pone-0090597-t002"><bold>Table 2</bold></xref>. The NFG group was designated as the control group, whereas the three remaining groups were designated as the case groups and classified as dependent variables (NFG = 0, IFG = 1, IGT = 2, and T2DM = 3). Each allele was classified as an independent variable. The statistical significance of the inclusion criteria was set to <italic>P</italic>&gt;0.05, whereas that for the exclusion criteria was set to <italic>P</italic>&lt;0.10. <xref ref-type="table" rid="pone-0090597-t002"><bold>Table 2</bold></xref> shows the association of intronic (CA)<italic><sub>n</sub></italic> repeat polymorphisms with prediabetes and T2DM risk. Using the most common (CA)<italic><sub>17</sub></italic> allele as a reference for estimating the strength of the association, allele (CA)<italic><sub>16</sub></italic> was significantly associated with increased risk of prediabetes and T2DM [IFG, OR (95% CI) = 1.938 (1.289–2.915), <italic>P</italic> = 0.001; IGT, OR (95% CI) = 2.021(1.347–3.034), <italic>P</italic> = 0.001; T2DM, OR (95% CI)  = 2.012 (1.345–3.009), <italic>P</italic> = 0.001, respectively]. The other alleles were not significantly associated with abnormal blood glucose (<italic>P</italic>&gt;0.05). The NFG group was designated as the control group, whereas the other three groups were designated as the case groups. All alleles without (CA)<italic><sub>16</sub></italic> that included (CA)<italic><sub>15</sub></italic>, (CA)<italic><sub>17</sub></italic>, (CA)<italic><sub>18</sub></italic>, and (CA)<italic><sub>19</sub></italic> were classified as one multiple allele. The (CA)<italic><sub>16</sub></italic> allele was used as a reference. The multiple alleles were negatively correlated significantly with the IFG, IGT, and T2DM groups [IFG, OR (95% CI)  = 0.510 (0.347–0.750), <italic>P</italic> = 0.001; IGT, OR (95% CI)  = 0.492 (0.336–0.721), <italic>P</italic> = 0.001; T2DM, OR (95% CI)  = 0.484 (0.331–0.708), <italic>P</italic> = 0.000, respectively].</p>
</sec></sec><sec id="s4">
<title>Discussion</title>
<p><xref ref-type="table" rid="pone-0090597-t001"><bold>Table 1</bold></xref> shows that the biochemical indices increased with the abnormal increase in blood glucose from IFG and IGT levels to T2DM levels. The interaction between the indices and the genetic polymorphism requires further research. SNPs and STRs are presently the two main genetic markers. The SNPSTR, which is a STR with one or more tightly linked SNPs, is a relatively new type of marker<xref ref-type="bibr" rid="pone.0090597-Agrafioti1">[14]</xref>. A previous study reported that the rs10886471 SNP is a risk marker T2DM<xref ref-type="bibr" rid="pone.0090597-Li1">[3]</xref>. The mRNA levels of the <italic>GRK5</italic> gene in the peripheral blood of the T2DM group was significantly higher than that in the controlled group, which suggests that the allelic frequency of the rs10886471 SNP affects the <italic>GRK5</italic> gene transcription level<xref ref-type="bibr" rid="pone.0090597-Li1">[3]</xref>, <xref ref-type="bibr" rid="pone.0090597-Wang2">[15]</xref>. However, how the rs10886471 intronic SNP affects transcription remains uncertain. Intronic SNPs may play a role by directly affecting gene expression or through linkage disequilibrium (LD) with another SNP<xref ref-type="bibr" rid="pone.0090597-Millar1">[16]</xref>.</p>
<p>Our study shows that rs10886471 is an SNP with a tightly linked STR marker. The increasing frequency of rs10886471 STR (CA)<italic><sub>16</sub></italic> is consistent with the increase in blood glucose. The frequency of the (CA)<italic><sub>16</sub></italic> allele was significantly lower than that of the (CA)<italic><sub>17</sub></italic> allele, but higher than that of alleles (CA)<italic><sub>18</sub></italic> and (CA)<italic><sub>19</sub></italic> among the four groups (all <italic>P</italic>&lt;0.05). The logistic regression models also showed that the (CA)<italic><sub>16</sub></italic> allele is the only risk factor significantly associated with abnormal blood glucose (OR&gt;1, <italic>P</italic>&lt;0.05). The multiple alleles without any (CA)<italic><sub>16</sub></italic> were significantly correlated negatively with prediabetes and T2DM (0&lt;OR&lt;1, <italic>P</italic>&lt;0.05). Therefore, the (CA)<italic><sub>16</sub></italic> allele of rs10886471 may contribute to the risk of developing T2DM, but multiple alleles without any (CA)<italic><sub>16</sub></italic> may be protective. Consequently, the (CA)<italic><sub>n</sub></italic> polymorphism of <italic>GRk5</italic> rs10886471 has a risk-protective yin–yang effect against prediabetes and T2DM. Our STR study combined with previously reports on rs10886471 SNP shows that the mechanism by which rs10886471 intronic SNP influences gene expression may differ from direct effect or LD with another SNP.</p>
<p>The most common cause of STR (CA)<italic><sub>n</sub></italic> repeats is replication slippage, which is caused by mismatches between DNA strands<xref ref-type="bibr" rid="pone.0090597-Tautz1">[17]</xref>. Numerous associations of variants with phenotypes cannot be elucidated using exonic variants; this limitation highlights the need for intronic variants<xref ref-type="bibr" rid="pone.0090597-Maurano1">[18]</xref>. Changes in length of STR (CA)<italic><sub>n</sub></italic> repeats within cis-regulatory regions can also change gene expression. As previously reported, microsatellites are predictors of nucleotide diversity and divergence<xref ref-type="bibr" rid="pone.0090597-Varela1">[19]</xref>, and (TG/CA)<italic><sub>n</sub></italic> repeats are present in the regulation of transcription from disease-related genes such as epidermal growth factor receptor, hydroxysteroid (11-beta) dehydrogenase 2, interferon-gamma, and <italic>CD154</italic><xref ref-type="bibr" rid="pone.0090597-Hui1">[10]</xref>, <xref ref-type="bibr" rid="pone.0090597-Hamilton1">[11]</xref>, <xref ref-type="bibr" rid="pone.0090597-Zhang1">[12]</xref>, <xref ref-type="bibr" rid="pone.0090597-Wang1">[13]</xref>. These mounting findings suggest that rs10886471 intronic SNP that causes <italic>GRK5</italic> overexpression and the subsequent risk of T2DM may be due to the involvement of intronic STR (CA)<italic><sub>n</sub></italic> in splicing (<xref ref-type="fig" rid="pone-0090597-g004"><bold>Figure 4</bold></xref>).</p>
<fig id="pone-0090597-g004" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0090597.g004</object-id><label>Figure 4</label><caption>
<title>The mechanism of intronic (CA)<italic><sub>n</sub></italic> splicing regulator in rs10886471.</title>
<p>The heterogeneous nuclear ribonucleoprotein L (hnRNP L) is specifically bound to diverse CA elements. <sup>10, 13</sup> It contains four RNA recognition motifs (RRMs) that bind to CA repeats. The crystal structures of hnRNP L RRMs at 2.0 and 1.8 Å has been elucidated. <sup>20</sup> The intronic (CA)<italic><sub>n</sub></italic> repeats in <italic>GRK5</italic> rs10886471 act as splicing enhancers or repressors and their yin–yang effect on T2DM depends on the CA repeat number. Intronic SNPs that affect gene expression may be mediated by LD with intronic STR (CA)<italic><sub>n</sub></italic> regulators.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0090597.g004" position="float" xlink:type="simple"/></fig>
<p><italic>GRK5</italic> affects insulin signal transduction pathways. The (CA)<italic><sub>16</sub></italic> of rs10886471 changes the <italic>GRK5</italic> gene transcription level via splicing code. <italic>GRK5</italic> phosphorylates G protein–coupled receptors (GPCRs), which are signal transduction receptors involved in glucose metabolism<xref ref-type="bibr" rid="pone.0090597-Zhang2">[20]</xref>, <xref ref-type="bibr" rid="pone.0090597-Wang3">[21]</xref>, <xref ref-type="bibr" rid="pone.0090597-So1">[22]</xref>. After phosphorylation by <italic>GRK5</italic>, GPCRs negatively regulate the effects of the glucose metabolic signal, and causes abnormal blood glucose and diabetes<xref ref-type="bibr" rid="pone.0090597-So1">[22]</xref>, <xref ref-type="bibr" rid="pone.0090597-Venkatakrishnan1">[23]</xref>. Previous studies have reported that <italic>GRK5</italic> and GPCR (class A) are related to cardiovascular and cerebrovascular diseases<xref ref-type="bibr" rid="pone.0090597-Kunapuli1">[24]</xref>, <xref ref-type="bibr" rid="pone.0090597-Freedman1">[25]</xref>. Current studies have shown that GPCRs (class B) are promising therapeutic targets that may aid in the design of new small-molecule drugs for metabolism diseases<xref ref-type="bibr" rid="pone.0090597-Couvineau1">[26]</xref>, <xref ref-type="bibr" rid="pone.0090597-Hollenstein1">[27]</xref>. However, the signal transduction pathway of GRK5–GPCR (class B) in T2DM remains unknown. The intronic (CA)<italic><sub>n</sub></italic> splicing regulator in <italic>GRK5</italic> expression provides new insight into the transduction mechanism of T2DM.</p>
<p>In summary, GRK5 rs10886471 acts as both an SNP site and an STR site, i.e., an SNPSTR marker. The rs10886471 STR has five (CA)<italic><sub>n</sub></italic> alleles and exerts a yin–yang effect on T2DM.The yin–yang effect may be dependent on the number of STR (CA)<italic><sub>n</sub></italic> repeats. The rs10886471 intronic SNP that causes <italic>GRK5</italic> overexpression and the subsequent risk of T2DM may caused by the rs10886471 intronic STR (CA)<italic><sub>n</sub></italic> splicing enhancer. Further studies should focus on a comprehensive association analysis between the <italic>GRK5</italic> rs10886471 SNP and STR with a large sample size. In addition, the mechanism by which the intronic (CA)<italic><sub>n</sub></italic> splicing code regulates the signal transduction of GRK5–GPCR (class B) should be elucidated.</p>
</sec></body>
<back>
<ack>
<p>The authors would like to thank Yanyan Jiang, Lin Cheng, Huangpu Yang, Zhangming Tang, Yujia Lei, Xiangxiu Zhen,Changqi Yu, Shijun Wang, Qinping Cai for performing the physical examination, blood collection, as well as Yunjin Yan, Xiongyu Xie, Xiaoyu Zhao, Yi Han, Xiaomei Zhan, Fumin Pan, Weichun Ke, Wanyuan Zhi, Haiyan Fu, Yeping Ceng, and Hengting Li for laboratory testing.</p>
</ack>
<ref-list>
<title>References</title>
<ref id="pone.0090597-Ginter1"><label>1</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Ginter</surname><given-names>E</given-names></name>, <name name-style="western"><surname>Simko</surname><given-names>V</given-names></name> (<year>2012</year>) <article-title>Type 2 diabetes mellitus, pandemic in 21st century</article-title>. <source>Adv Exp Med Biol</source> <volume>771</volume>: <fpage>42</fpage>–<lpage>50</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Lin1"><label>2</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Lin</surname><given-names>Y</given-names></name>, <name name-style="western"><surname>Sun</surname><given-names>Z</given-names></name> (<year>2010</year>) <article-title>Current views on type 2 diabetes</article-title>. <source>JEndocrinol</source> <volume>204</volume>: <fpage>1</fpage>–<lpage>11</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Li1"><label>3</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Li</surname><given-names>H</given-names></name>, <name name-style="western"><surname>Gan</surname><given-names>W</given-names></name>, <name name-style="western"><surname>Lu</surname><given-names>L</given-names></name>, <name name-style="western"><surname>Dong</surname><given-names>X</given-names></name>, <name name-style="western"><surname>Han</surname><given-names>X</given-names></name>, <etal>et al</etal>. (<year>2013</year>) <article-title>A genome-wide association study identifies <italic>GRK5</italic> and RASGRP1 as type 2 diabetes loci in Chinese Hans</article-title>. <source>Diabetes</source> <volume>62</volume>: <fpage>291</fpage>–<lpage>298</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Tariq1"><label>4</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Tariq</surname><given-names>K</given-names></name>, <name name-style="western"><surname>Malik</surname><given-names>SB</given-names></name>, <name name-style="western"><surname>Ali</surname><given-names>SH</given-names></name>, <name name-style="western"><surname>Maqsood</surname><given-names>SE</given-names></name>, <name name-style="western"><surname>Azam</surname><given-names>A</given-names></name>, <etal>et al</etal>. (<year>2013</year>) <article-title>Association of Pro12Ala polymorphism in peroxisome proliferator activated receptor gamma with proliferative diabetic retinopathy</article-title>. <source>Mol Vis</source> <volume>19</volume>: <fpage>710</fpage>–<lpage>717</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Yilmaz1"><label>5</label>
<mixed-citation publication-type="other" xlink:type="simple">Yilmaz AH, Kurnaz O, Kucukhuseyin O, Akadam TB, Kurt O, <etal>et al</etal>..(2013) Different effects of PPARA, PPARG and ApoE SNPs on serum lipids in patients with coronary heart disease based on the presence of diabetes. Gene: <volume>523</volume>: , 20–26.</mixed-citation>
</ref>
<ref id="pone.0090597-Yin1"><label>6</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Yin</surname><given-names>YW</given-names></name>, <name name-style="western"><surname>Hu</surname><given-names>AM</given-names></name>, <name name-style="western"><surname>Sun</surname><given-names>QQ</given-names></name>, <name name-style="western"><surname>Zhang</surname><given-names>BB</given-names></name>, <name name-style="western"><surname>Liu</surname><given-names>HL</given-names></name>, <etal>et al</etal>. (<year>2013</year>) <article-title>Association between interleukin 10 gene -1082 A/G polymorphism and the risk of type 2 diabetes mellitus: A meta-analysis of 4250 subjects</article-title>. <source>Cytokine</source> <volume>62</volume>: <fpage>226</fpage>–<lpage>231</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Dou1"><label>7</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Dou</surname><given-names>H</given-names></name>, <name name-style="western"><surname>Ma</surname><given-names>E</given-names></name>, <name name-style="western"><surname>Yin</surname><given-names>L</given-names></name>, <name name-style="western"><surname>Jin</surname><given-names>Y</given-names></name>, <name name-style="western"><surname>Wang</surname><given-names>H</given-names></name> (<year>2013</year>) <article-title>The association between gene polymorphism of TCF7L2 and type 2 diabetes in Chinese Han population: a meta-analysis</article-title>. <source>PLoS One</source> <volume>8</volume>: <fpage>e59495</fpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Chen1"><label>8</label>
<mixed-citation publication-type="other" xlink:type="simple">Chen HY, Huang W, Leung VH, Fung SL, Ma SL (2013) Functional Interaction Between SNPs and Microsatellite in the Transcriptional Regulation of Insulin-Like Growth Factor 1. Hum Mutat (doi: 10.1002/humu.22363).</mixed-citation>
</ref>
<ref id="pone.0090597-World1"><label>9</label>
<mixed-citation publication-type="other" xlink:type="simple">World Health Organization (2006) Definition and diagnosis of diabetes mellitus and intermediate hyperglycemia. Report of a WHO consultation, Geneva.</mixed-citation>
</ref>
<ref id="pone.0090597-Hui1"><label>10</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Hui</surname><given-names>J</given-names></name>, <name name-style="western"><surname>Stangl</surname><given-names>K</given-names></name>, <name name-style="western"><surname>Lane</surname><given-names>WS</given-names></name>, <name name-style="western"><surname>Bindereif</surname><given-names>A</given-names></name> (<year>2003</year>) <article-title>HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats</article-title>. <source>Nat Struct Biol</source> <volume>10</volume>: <fpage>33</fpage>–<lpage>37</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Hamilton1"><label>11</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Hamilton</surname><given-names>BJ</given-names></name>, <name name-style="western"><surname>Wang</surname><given-names>XW</given-names></name>, <name name-style="western"><surname>Collins</surname><given-names>J</given-names></name>, <name name-style="western"><surname>Bloch</surname><given-names>D</given-names></name>, <name name-style="western"><surname>Bergeron</surname><given-names>A</given-names></name> (<year>2008</year>) <article-title>Separate cis-trans pathways post-transcriptionally regulate murine CD154 (CD40 ligand) expression: a novel function for CA repeats in the 3′-untranslated region</article-title>. <source>J Biol Chem</source> <volume>283</volume>: <fpage>25606</fpage>–<lpage>25616</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Zhang1"><label>12</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Zhang</surname><given-names>W</given-names></name>, <name name-style="western"><surname>He</surname><given-names>L</given-names></name>, <name name-style="western"><surname>Liu</surname><given-names>W</given-names></name>, <name name-style="western"><surname>Sun</surname><given-names>C</given-names></name>, <name name-style="western"><surname>Ratain</surname><given-names>MJ</given-names></name> (<year>2009</year>) <article-title>Exploring the relationship between polymorphic (TG/CA)n repeats in intron 1 regions and gene expression</article-title>. <source>Hum Genomics</source> <volume>3</volume>: <fpage>236</fpage>–<lpage>245</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Wang1"><label>13</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Wang</surname><given-names>Y</given-names></name>, <name name-style="western"><surname>Ma</surname><given-names>M</given-names></name>, <name name-style="western"><surname>Xiao</surname><given-names>X</given-names></name>, <name name-style="western"><surname>Wang</surname><given-names>Z</given-names></name> (<year>2012</year>) <article-title>Intronic splicing enhancers, cognate splicing factors and context-dependent regulation rules</article-title>. <source>Nat Struct Mol Biol</source> <volume>19</volume>: <fpage>1044</fpage>–<lpage>1052</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Agrafioti1"><label>14</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Agrafioti</surname><given-names>I</given-names></name>, <name name-style="western"><surname>Stumpf</surname><given-names>MP</given-names></name> (<year>2007</year>) <article-title>SNPSTR: a database of compound microsatellite-SNP markers</article-title>. <source>Nucleic Acids Res</source> <volume>35</volume>: <fpage>D71</fpage>–<lpage>75</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Wang2"><label>15</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Wang</surname><given-names>L</given-names></name>, <name name-style="western"><surname>Shen</surname><given-names>M</given-names></name>, <name name-style="western"><surname>Wang</surname><given-names>F</given-names></name>, <name name-style="western"><surname>Ma</surname><given-names>L</given-names></name> (<year>2012</year>) <article-title>GRK5 ablation contributes to insulin resistance</article-title>. <source>Biochem Biophys Res Commun</source> <volume>429</volume>: <fpage>99</fpage>–<lpage>104</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Millar1"><label>16</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Millar</surname><given-names>DS</given-names></name>, <name name-style="western"><surname>Horan</surname><given-names>M</given-names></name>, <name name-style="western"><surname>Chuzhanova</surname><given-names>NA</given-names></name>, <name name-style="western"><surname>Cooper</surname><given-names>DN</given-names></name> (<year>2010</year>) <article-title>Characterisation of a functional intronic polymorphism in the human growth hormone (GH1) gene</article-title>. <source>Hum Genomics</source> <volume>4</volume>: <fpage>289</fpage>–<lpage>301</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Tautz1"><label>17</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Tautz</surname><given-names>D</given-names></name>, <name name-style="western"><surname>Schlötterer</surname><given-names>C</given-names></name> (<year>1994</year>) <article-title>Simple sequence</article-title>. <source>Curr Opin Genet Dev</source> <volume>4</volume>: <fpage>832</fpage>–<lpage>837</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Maurano1"><label>18</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Maurano</surname><given-names>MT</given-names></name>, <name name-style="western"><surname>Humbert</surname><given-names>R</given-names></name>, <name name-style="western"><surname>Rynes</surname><given-names>E</given-names></name>, <name name-style="western"><surname>Thurman</surname><given-names>RE</given-names></name>, <name name-style="western"><surname>Haugen</surname><given-names>E</given-names></name>, <etal>et al</etal>. (<year>2012</year>) <article-title>Systematic localization of common disease-associated variation in regulatory DNA</article-title>. <source>Science</source> <volume>337</volume>: <fpage>1190</fpage>–<lpage>1195</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Varela1"><label>19</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Varela</surname><given-names>MA</given-names></name>, <name name-style="western"><surname>Amos</surname><given-names>W</given-names></name> (<year>2010</year>) <article-title>Heterogeneous distribution of SNPs in the human genome: microsatellites as predictors of nucleotide diversity and divergence</article-title>. <source>Genomics</source> <volume>95</volume>: <fpage>151</fpage>–<lpage>159</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Zhang2"><label>20</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Zhang</surname><given-names>W</given-names></name>, <name name-style="western"><surname>Zeng</surname><given-names>F</given-names></name>, <name name-style="western"><surname>Liu</surname><given-names>Y</given-names></name>, <name name-style="western"><surname>Zhao</surname><given-names>Y</given-names></name>, <name name-style="western"><surname>Lv</surname><given-names>H</given-names></name>, <etal>et al</etal>. (<year>2013</year>) <article-title>Crystal Structures and RNA-binding Properties of the RNA Recognition Motifs of Heterogeneous Nuclear Ribonucleoprotein L: INSIGHTS INTO ITS ROLES IN ALTERNATIVE SPLICING REGULATION</article-title>. <source>J Biol Chem</source> <volume>288</volume>: <fpage>22636</fpage>–<lpage>22649</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Wang3"><label>21</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Wang</surname><given-names>WC</given-names></name>, <name name-style="western"><surname>Mihlbachler</surname><given-names>KA</given-names></name>, <name name-style="western"><surname>Bleecker</surname><given-names>ER</given-names></name>, <name name-style="western"><surname>Weiss</surname><given-names>ST</given-names></name>, <name name-style="western"><surname>Liggett</surname><given-names>SB</given-names></name> (<year>2008</year>) <article-title>A polymorphism of G-protein coupled receptor kinase5 alters agonist-promoted desensitization of beta2-adrenergic receptors</article-title>. <source>Pharmacogenet Genomics</source> <volume>18</volume>: <fpage>729</fpage>–<lpage>732</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-So1"><label>22</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>So</surname><given-names>CH</given-names></name>, <name name-style="western"><surname>Michal</surname><given-names>AM</given-names></name>, <name name-style="western"><surname>Mashayekhi</surname><given-names>R</given-names></name>, <name name-style="western"><surname>Benovic</surname><given-names>JL</given-names></name> (<year>2012</year>) <article-title>G protein-coupled receptor kinase 5 phosphorylates nucleophosmin and regulates cell sensitivity to polo-like kinase 1 inhibition</article-title>. <source>J Biol Chem</source> <volume>287</volume>: <fpage>17088</fpage>–<lpage>17099</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Venkatakrishnan1"><label>23</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Venkatakrishnan</surname><given-names>AJ</given-names></name>, <name name-style="western"><surname>Deupi</surname><given-names>X</given-names></name>, <name name-style="western"><surname>Lebon</surname><given-names>G</given-names></name>, <name name-style="western"><surname>Tate</surname><given-names>CG</given-names></name>, <name name-style="western"><surname>Schertler</surname><given-names>GF</given-names></name>, <etal>et al</etal>. (<year>2013</year>) <article-title>Molecular signatures of G-protein-coupled receptors</article-title>. <source>Nature</source> <volume>494</volume>: <fpage>185</fpage>–<lpage>194</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Kunapuli1"><label>24</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Kunapuli</surname><given-names>P</given-names></name>, <name name-style="western"><surname>Benovic</surname><given-names>JL</given-names></name> (<year>1993</year>) <article-title>Cloning and expression of GRK5: a member of the G protein-coupled receptor kinase family</article-title>. <source>Proc Natl Acad Sci USA</source> <volume>90</volume>: <fpage>5588</fpage>–<lpage>5592</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Freedman1"><label>25</label>
<mixed-citation publication-type="other" xlink:type="simple">Freedman NJ, Ament AS, Oppermann M, Stoffel RH, Exum ST(1997) Phosphorylation and desensitization of human endothelin A and B receptors,Evidence for G protein-coupled receptor kinase specificity. Biol Chem:<volume>272</volume>: , 17734–17743.</mixed-citation>
</ref>
<ref id="pone.0090597-Couvineau1"><label>26</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Couvineau</surname><given-names>A</given-names></name>, <name name-style="western"><surname>Laburthe</surname><given-names>M</given-names></name> (<year>2012</year>) <article-title>The family B1 GPCR: structural aspects and interaction with accessory proteins</article-title>. <source>Curr Drug Targets</source> <volume>13</volume>: <fpage>103</fpage>–<lpage>115</lpage>.</mixed-citation>
</ref>
<ref id="pone.0090597-Hollenstein1"><label>27</label>
<mixed-citation publication-type="journal" xlink:type="simple"><name name-style="western"><surname>Hollenstein</surname><given-names>K</given-names></name>, <name name-style="western"><surname>Kean</surname><given-names>J</given-names></name>, <name name-style="western"><surname>Bortolato</surname><given-names>A</given-names></name>, <name name-style="western"><surname>Cheng</surname><given-names>RK</given-names></name>, <name name-style="western"><surname>Doré</surname><given-names>AS</given-names></name>, <etal>et al</etal>. (<year>2013</year>) <article-title>Structure of class B GPCR corticotropin-releasing factor receptor 1</article-title>. <source>Nature</source> <volume>499</volume>: <fpage>438</fpage>–<lpage>443</lpage>.</mixed-citation>
</ref>
</ref-list></back>
</article>