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<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">PLoS ONE</journal-id>
<journal-id journal-id-type="publisher-id">plos</journal-id>
<journal-id journal-id-type="pmc">plosone</journal-id><journal-title-group>
<journal-title>PLoS ONE</journal-title></journal-title-group>
<issn pub-type="epub">1932-6203</issn>
<publisher>
<publisher-name>Public Library of Science</publisher-name>
<publisher-loc>San Francisco, USA</publisher-loc></publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">PONE-D-14-22430</article-id>
<article-id pub-id-type="doi">10.1371/journal.pone.0103877</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="Discipline-v2"><subject>Biology and life sciences</subject><subj-group><subject>Physiology</subject><subj-group><subject>Physiological processes</subject><subj-group><subject>Sleep</subject></subj-group></subj-group></subj-group><subj-group><subject>Theoretical biology</subject></subj-group></subj-group></article-categories>
<title-group>
<article-title>Mathematical Models for Sleep-Wake Dynamics: Comparison of the Two-Process Model and a Mutual Inhibition Neuronal Model</article-title>
<alt-title alt-title-type="running-head">Mathematical Models for Sleep-Wake Dynamics</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Skeldon</surname><given-names>Anne C.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="corresp" rid="cor1"><sup>*</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Dijk</surname><given-names>Derk-Jan</given-names></name><xref ref-type="aff" rid="aff2"><sup>2</sup></xref></contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Derks</surname><given-names>Gianne</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref></contrib>
</contrib-group>
<aff id="aff1"><label>1</label><addr-line>Department of Mathematics, University of Surrey, Guildford, Surrey, United Kingdom</addr-line></aff>
<aff id="aff2"><label>2</label><addr-line>Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, United Kingdom</addr-line></aff>
<contrib-group>
<contrib contrib-type="editor" xlink:type="simple"><name name-style="western"><surname>Csikász-Nagy</surname><given-names>Attila</given-names></name>
<role>Editor</role>
<xref ref-type="aff" rid="edit1"/></contrib>
</contrib-group>
<aff id="edit1"><addr-line>Fondazione Edmund Mach, Research and Innovation Centre, Italy</addr-line></aff>
<author-notes>
<corresp id="cor1">* E-mail: <email xlink:type="simple">a.skeldon@surrey.ac.uk</email></corresp>
<fn fn-type="conflict"><p>The authors have declared that no competing interests exist.</p></fn>
<fn fn-type="con"><p>Conceived and designed the experiments: ACS DJD GD. Performed the experiments: ACS. Analyzed the data: ACS. Contributed reagents/materials/analysis tools: ACS. Wrote the paper: ACS DJD GD.</p></fn>
</author-notes>
<pub-date pub-type="collection"><year>2014</year></pub-date>
<pub-date pub-type="epub"><day>1</day><month>8</month><year>2014</year></pub-date>
<volume>9</volume>
<issue>8</issue>
<elocation-id>e103877</elocation-id>
<history>
<date date-type="received"><day>20</day><month>5</month><year>2014</year></date>
<date date-type="accepted"><day>3</day><month>7</month><year>2014</year></date>
</history>
<permissions>
<copyright-year>2014</copyright-year>
<copyright-holder>Skeldon et al</copyright-holder><license xlink:type="simple"><license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/" xlink:type="simple">Creative Commons Attribution License</ext-link>, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p></license></permissions>
<abstract>
<p>Sleep is essential for the maintenance of the brain and the body, yet many features of sleep are poorly understood and mathematical models are an important tool for probing proposed biological mechanisms. The most well-known mathematical model of sleep regulation, the two-process model, models the sleep-wake cycle by two oscillators: a circadian oscillator and a homeostatic oscillator. An alternative, more recent, model considers the mutual inhibition of sleep promoting neurons and the ascending arousal system regulated by homeostatic and circadian processes. Here we show there are fundamental similarities between these two models. The implications are illustrated with two important sleep-wake phenomena. Firstly, we show that in the two-process model, transitions between different numbers of daily sleep episodes can be classified as grazing bifurcations. This provides the theoretical underpinning for numerical results showing that the sleep patterns of many mammals can be explained by the mutual inhibition model. Secondly, we show that when sleep deprivation disrupts the sleep-wake cycle, ostensibly different measures of sleepiness in the two models are closely related. The demonstration of the mathematical similarities of the two models is valuable because not only does it allow some features of the two-process model to be interpreted physiologically but it also means that knowledge gained from study of the two-process model can be used to inform understanding of the behaviour of the mutual inhibition model. This is important because the mutual inhibition model and its extensions are increasingly being used as a tool to understand a diverse range of sleep-wake phenomena such as the design of optimal shift-patterns, yet the values it uses for parameters associated with the circadian and homeostatic processes are very different from those that have been experimentally measured in the context of the two-process model.</p>
</abstract>
<funding-group><funding-statement>This work was partially supported by the Engineering and Physical Sciences Research Council (grant number EP/I000992/1) <ext-link ext-link-type="uri" xlink:href="http://www.epsrc.ac.uk" xlink:type="simple">www.epsrc.ac.uk</ext-link> and by the Royal Society of Medicine <ext-link ext-link-type="uri" xlink:href="http://www.rsm.ac.uk" xlink:type="simple">www.rsm.ac.uk</ext-link> (DJD). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement></funding-group><counts><page-count count="16"/></counts><custom-meta-group><custom-meta id="data-availability" xlink:type="simple"><meta-name>Data Availability</meta-name><meta-value>The authors confirm that all data underlying the findings are fully available without restriction. All relevant data are contained within the paper.</meta-value></custom-meta></custom-meta-group></article-meta>
</front>
<body><sec id="s1">
<title>Introduction</title>
<p>Reduced or mis-timed sleep is increasingly recognized as presenting a significant health risk and has been correlated with increases in a diverse range of medical problems including all-cause mortality, cardio-vascular disease, diabetes and impaired vigilance and cognition <xref ref-type="bibr" rid="pone.0103877-Cappuccio1">[1]</xref>–<xref ref-type="bibr" rid="pone.0103877-Kronholm1">[5]</xref>. The biological mechanisms that result in such problems are beginning to be understood: recent work has shown that changes to the duration or timing of the human sleep-wake cycle can result in the up- or down regulation and changes to the temporal pattern of large numbers of genes associated with biological processes including metabolic, inflammatory, immune, stress responses and circadian rhythmicity <xref ref-type="bibr" rid="pone.0103877-MllerLevet1">[6]</xref>, <xref ref-type="bibr" rid="pone.0103877-Archer1">[ 7]</xref>. To further understand the underlying phenomena and associations that govern sleep-wake regulation, mathematical models are an important tool to help clarify concepts, challenge accepted ideas and aid in the interpretation of data.</p>
<p>A review of early mathematical models of sleep is given in <xref ref-type="bibr" rid="pone.0103877-MooreEde1">[8]</xref>, leading up to the seminal model of Borbély, Daan and Beersma <xref ref-type="bibr" rid="pone.0103877-Borbly1">[9]</xref>, <xref ref-type="bibr" rid="pone.0103877-Daan1">[ 10]</xref>, usually called the two-process model, and extended by Borbély and Achermann <xref ref-type="bibr" rid="pone.0103877-Borbly2">[11]</xref>. As indicated by its name, the two-process model proposes that the sleep-wake cycle can be understood in terms of two processes: a homeostatic process and a circadian process. The homeostatic process takes the form of a relaxation oscillator that results in a monotonically increasing ‘sleep pressure’ during wake that is dissipated during sleep. Switching from wake to sleep and from sleep to wake occurs at upper and lower threshold values of the sleep pressure respectively, where the thresholds are modulated by an approximately sinusoidal circadian oscillator. This model has proved compelling for both its physiological grounding and its graphical simplicity and has been used extensively (there are over 1500 citations to <xref ref-type="bibr" rid="pone.0103877-Borbly1">[9]</xref> and 600 citations to <xref ref-type="bibr" rid="pone.0103877-Daan1">[10]</xref> to-date). For example: to explain why only a relatively short period of recovery sleep is needed to compensate for even lengthy periods of sleep deprivation <xref ref-type="bibr" rid="pone.0103877-Borbly1">[9]</xref>; to explain chronotype changes in adolescents <xref ref-type="bibr" rid="pone.0103877-Hagenauer1">[12]</xref>. Extensions of the two-process model have been developed to explain the results of chronic sleep restriction experiments <xref ref-type="bibr" rid="pone.0103877-Avinash1">[13]</xref>, <xref ref-type="bibr" rid="pone.0103877-McCauley1">[ 14]</xref>. Despite its success, it remains difficult to relate the threshold values in the two-process model and its extensions to physiological processes.</p>
<p>Advances in neurophysiology have led to a proliferation of models that aim to extend the two-process model to a more physiological setting <xref ref-type="bibr" rid="pone.0103877-Tamakawa1">[15]</xref>–<xref ref-type="bibr" rid="pone.0103877-Booth1">[21]</xref>. A recent review is given in <xref ref-type="bibr" rid="pone.0103877-Booth2">[22]</xref>. The most extensively tested of these is the model of Phillips and Robinson <xref ref-type="bibr" rid="pone.0103877-Phillips1">[17]</xref> (the PR model), which has been used to explain sleep fragmentation experiments <xref ref-type="bibr" rid="pone.0103877-Fulcher1">[23]</xref>, differences in mammalian sleep patterns <xref ref-type="bibr" rid="pone.0103877-Phillips2">[24]</xref> and subjective fatigue during sleep deprivation <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref>. The PR model has also been extended to allow for the inclusion of the effects of caffeine <xref ref-type="bibr" rid="pone.0103877-Puckeridge1">[26]</xref> and to allow for feedback of the sleep-wake cycle on the circadian oscillator in order to explain spontaneous internal desynchrony <xref ref-type="bibr" rid="pone.0103877-Phillips3">[27]</xref>, <xref ref-type="bibr" rid="pone.0103877-Phillips4">[ 28]</xref>.</p>
<p>In <xref ref-type="bibr" rid="pone.0103877-Phillips1">[17]</xref>, <xref ref-type="bibr" rid="pone.0103877-Rempe1">[ 20]</xref>, it was observed that the results of two different physiologically based models could be presented in a qualitatively similar way to those from the two-process model. Here we show that some features of the PR model are not only qualitatively, but also quantitatively similar to the two-process model: the parameters in the PR model can be explicitly related to the parameters in the two-process model, giving a physiological interpretation to the thresholds in the two-process model. We illustrate the consequences of this explicit relation with two important sleep-wake phenomena. First, by using the fact that the two-process model can be represented as a one-dimensional map with discontinuities <xref ref-type="bibr" rid="pone.0103877-Nakao1">[29]</xref>, <xref ref-type="bibr" rid="pone.0103877-Nakao2">[ 30]</xref>, we demonstrate how transitions between monophasic and polyphasic sleep occur through grazing bifurcations. These grazing bifurcations are then used to provide a theoretical underpinning for the observations that many mammalian sleep patterns can be understood within a common framework by varying just two parameters in the PR model <xref ref-type="bibr" rid="pone.0103877-Phillips2">[24]</xref>. Second, turning to sleep deprivation experiments, we show how the ‘wake effort’ concept introduced in the PR model to explain sleep deprivation can be explicitly related to the two-process model. This shows that the wake effort is closely related to the difference between the homeostatic pressure and the circadian oscillator, a measure often used in the context of the two-process model to understand sleepiness. Furthermore we discuss briefly how the PR model may explain effects of chronic partial sleep deprivation on waking performance.</p>
</sec><sec id="s2">
<title>Results</title>
<p>First we give a summary of the main features of the two-process model and the PR model.</p>
<sec id="s2a">
<title>The two process model</title>
<p>The two-process model considers a homeostatic pressure <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e001" xlink:type="simple"/></inline-formula> that decreases exponentially during sleep, <disp-formula id="pone.0103877.e002"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e002" xlink:type="simple"/><label>(1)</label></disp-formula>and increases during wake, <disp-formula id="pone.0103877.e003"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e003" xlink:type="simple"/><label>(2)</label></disp-formula></p>
<p>The parameter <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e004" xlink:type="simple"/></inline-formula> is known as the ‘upper asymptote’ <xref ref-type="bibr" rid="pone.0103877-Avinash1">[13]</xref>, <xref ref-type="bibr" rid="pone.0103877-McCauley1">[ 14]</xref>, this is the value that the homeostatic pressure <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e005" xlink:type="simple"/></inline-formula> would reach if no switch to sleep occurred. Similarly there is a ‘lower asymptote’ of zero. Switching between wake and sleep occurs when the homeostatic pressure <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e006" xlink:type="simple"/></inline-formula> reaches an upper threshold, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e007" xlink:type="simple"/></inline-formula>, that consists of a mean value <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e008" xlink:type="simple"/></inline-formula> modulated by a circadian process <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e009" xlink:type="simple"/></inline-formula>, <disp-formula id="pone.0103877.e010"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e010" xlink:type="simple"/><label>(3)</label></disp-formula></p>
<p>The switch between sleep and wake occurs when <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e011" xlink:type="simple"/></inline-formula> reaches a lower threshold, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e012" xlink:type="simple"/></inline-formula>, <disp-formula id="pone.0103877.e013"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e013" xlink:type="simple"/><label>(4)</label></disp-formula>where <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e014" xlink:type="simple"/></inline-formula> is a periodic function of period 24 hours. In the simplest cases <disp-formula id="pone.0103877.e015"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e015" xlink:type="simple"/></disp-formula>but more complicated forms that include higher harmonics, such as <disp-formula id="pone.0103877.e016"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e016" xlink:type="simple"/></disp-formula>have also been used <xref ref-type="bibr" rid="pone.0103877-Borbly2">[11]</xref>. Typical results of this model illustrating its rich dynamics are shown in <xref ref-type="fig" rid="pone-0103877-g001">Figure 1</xref>.</p>
<fig id="pone-0103877-g001" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0103877.g001</object-id><label>Figure 1</label><caption>
<title>Sleep-wake cycles generated by the two-process model.</title>
<p>With the parameters as in <xref ref-type="bibr" rid="pone.0103877-Daan1">[10]</xref>, <xref ref-type="fig" rid="pone-0103877-g003">Figure 3:</xref> <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e017" xlink:type="simple"/></inline-formula> <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e018" xlink:type="simple"/></inline-formula> <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e019" xlink:type="simple"/></inline-formula> <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e020" xlink:type="simple"/></inline-formula> <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e021" xlink:type="simple"/></inline-formula> <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e022" xlink:type="simple"/></inline-formula> (a) <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e023" xlink:type="simple"/></inline-formula> (b) <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e024" xlink:type="simple"/></inline-formula> (c) <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e025" xlink:type="simple"/></inline-formula> The times when sleep occurs (<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e026" xlink:type="simple"/></inline-formula> decreasing) are shaded.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0103877.g001" position="float" xlink:type="simple"/></fig></sec><sec id="s2b">
<title>Phillips and Robinson model (PR model)</title>
<p>At the core of the PR model are two groups of neurons: mono-aminergic (MA) neurons in the ascending arousal system that promote wake and neurons based in the ventro-lateral pre-optic (VLPO) area of the hypothalamus that promote sleep. Phillips and Robinson model the interaction between the MA and the VLPO as mutually inhibitory. In the absence of further effects, this would mean that the model would either stay in a state with the MA active (wake) or in a state with the VLPO active (sleep) and no switching between the states would occur. Switching between sleep and wake occurs because the model also includes a drive to the VLPO that is time dependent and consists of two components: a circadian drive, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e027" xlink:type="simple"/></inline-formula>, and a homeostatic drive <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e028" xlink:type="simple"/></inline-formula>. The structure of the PR model is shown in <xref ref-type="fig" rid="pone-0103877-g002">Figure 2(a)</xref>.</p>
<fig id="pone-0103877-g002" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0103877.g002</object-id><label>Figure 2</label><caption>
<title>The PR model and typical solutions.</title>
<p>(a) Diagrammatic description of the PR model showing the links between the VLPO, MA, the homeostatic and the circadian processes. (b), (c) and (d) show typical timeseries for the level of the homeostat, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e029" xlink:type="simple"/></inline-formula>, and the firing rates of the MA and VLPO, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e030" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e031" xlink:type="simple"/></inline-formula>, respectively. The times where sleep occurs are shaded.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0103877.g002" position="float" xlink:type="simple"/></fig>
<p>The neurons are modelled at a population level and are represented by their mean cell body potential relative to rest, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e032" xlink:type="simple"/></inline-formula> for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e033" xlink:type="simple"/></inline-formula>, where <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e034" xlink:type="simple"/></inline-formula> represents the VLPO group and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e035" xlink:type="simple"/></inline-formula> represents the MA. The potential is related to the firing rates of the neurons by the firing function, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e036" xlink:type="simple"/></inline-formula>, <disp-formula id="pone.0103877.e037"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e037" xlink:type="simple"/><label>(5)</label></disp-formula>where <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e038" xlink:type="simple"/></inline-formula> is the maximum firing rate and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e039" xlink:type="simple"/></inline-formula> is the mean firing threshold relative to resting. The function <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e040" xlink:type="simple"/></inline-formula> is a sigmoid function, which is close to zero for all negative values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e041" xlink:type="simple"/></inline-formula> and then saturates exponentially fast to <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e042" xlink:type="simple"/></inline-formula>.</p>
<p>The neuronal dynamics are represented by <disp-formula id="pone.0103877.e043"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e043" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e044"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e044" xlink:type="simple"/><label>(6)</label></disp-formula>where the drive to the VLPO, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e045" xlink:type="simple"/></inline-formula> and to the MA, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e046" xlink:type="simple"/></inline-formula> are given by <disp-formula id="pone.0103877.e047"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e047" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e048"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e048" xlink:type="simple"/></disp-formula></p>
<p>The homeostatic component of the drive, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e049" xlink:type="simple"/></inline-formula> is modelled by <disp-formula id="pone.0103877.e050"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e050" xlink:type="simple"/><label>(7)</label></disp-formula>and the circadian drive, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e051" xlink:type="simple"/></inline-formula>, is approximated by <disp-formula id="pone.0103877.e052"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e052" xlink:type="simple"/></disp-formula>where <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e053" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e054" xlink:type="simple"/></inline-formula> is a phase shift that specifies the distance from the circadian maximum. Typically, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e055" xlink:type="simple"/></inline-formula> is chosen so that the switch from sleep to wake occurs at an appropriate clock time.</p>
<p>Typical results produced by the PR model are shown in <xref ref-type="fig" rid="pone-0103877-g002">Figure 2(b)</xref>–(d). During wake, the firing rate of the MA neurons is high (<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e056" xlink:type="simple"/></inline-formula>), that of the VLPO is low and the homeostatic pressure tends to increase, while during sleep the firing rate of the MA neurons is low (<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e057" xlink:type="simple"/></inline-formula>), that of the VLPO is high and the homeostatic pressure tends to decrease. Note that in the PR model switching between wake and sleep is defined to occur when <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e058" xlink:type="simple"/></inline-formula> reaches the threshold value of one; this differs from the timing of the maximum and minimum homeostatic pressure by a few minutes. Obviously, the exact choice of the threshold value does not play an important role in the dynamics of the system, but does change the regions that are labelled as sleep or wake.</p>
</sec><sec id="s2c">
<title>Comparison of the PR and two-process models</title>
<p>As recognised in <xref ref-type="bibr" rid="pone.0103877-Fulcher1">[23]</xref>, since changes in neuronal potentials happen much faster than changes associated with the homeostatic pressure, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e059" xlink:type="simple"/></inline-formula>, there is a strong separation of timescales in the PR model. This strong separation of timescales means that the dynamics of the PR model is well approximated by two separate models: one on the ‘slow’ timescale that is appropriate when considering changes on the timescale of the circadian and homeostatic processes such as the timings of sleep and wake; and the other, the ‘fast’ timescale, which is appropriate when considering changes on the timescale of the neuronal potentials such as the response to a night time disturbance. If the firing switching function <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e060" xlink:type="simple"/></inline-formula> given in <xref ref-type="disp-formula" rid="pone.0103877.e037">equation (5</xref>) in the PR model is replaced by a hard switch, <disp-formula id="pone.0103877.e061"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e061" xlink:type="simple"/><label>(8)</label></disp-formula>where <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e062" xlink:type="simple"/></inline-formula> is the mean maximum firing rate of the neuronal population and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e063" xlink:type="simple"/></inline-formula> is the value at which the switch occurs, we show in the <xref ref-type="sec" rid="s4">Methods</xref> section that the parameters for the slow dynamics of the PR model with a switch can be exactly mapped to parameter values in the two-process model, specifically, <disp-formula id="pone.0103877.e064"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e064" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e065"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e065" xlink:type="simple"/><label>(9)</label></disp-formula></p>
<p>The lower threshold is therefore dependent on the mean drive to the VLPO and the threshold firing rate. The difference between the thresholds in the two-process model, <disp-formula id="pone.0103877.e066"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e066" xlink:type="simple"/></disp-formula>can then be interpreted physiologically as the amount by which the MA inhibits the firing of the VLPO during wake. This makes intuitive sense: there is hysteresis in the switch between wake and sleep because of the mutual inhibition between the MA and the VLPO. In the wake state, the VLPO requires a large drive to fire to counteract the inhibitory effects of the MA. Once in the sleep state, less drive is needed to maintain firing because the MA is quiescent.</p>
<p>Using the standard parameters for the PR model, only a small part of the firing function (5) is used. This is illustrated in <xref ref-type="fig" rid="pone-0103877-g003">Figure 3(a)</xref>, where the firing function is shown by the dashed line and the typical range of values for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e067" xlink:type="simple"/></inline-formula> is shown by the thick (red) line. We show in the <xref ref-type="sec" rid="s4">Methods</xref> section that there is a systematic way to relate the parameters for the original PR model to equivalent parameters for the two-process model that retain the timings and values at the extrema of the homeostat. In keeping with the fact that the mean firing rate across the neuronal population <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e068" xlink:type="simple"/></inline-formula> is much less than the maximum possible firing rate <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e069" xlink:type="simple"/></inline-formula>, the value for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e070" xlink:type="simple"/></inline-formula> is significantly less than <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e071" xlink:type="simple"/></inline-formula> but close to the mean firing rate across the population in the PR model: in fact the actual firing function needed in the PR-switch model is shown by the blue line in <xref ref-type="fig" rid="pone-0103877-g003">Figure 3(b)</xref>.</p>
<fig id="pone-0103877-g003" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0103877.g003</object-id><label>Figure 3</label><caption>
<title>The PR model and the PR switch model.</title>
<p>(a) The dashed (black) line shows the firing function given by <xref ref-type="disp-formula" rid="pone.0103877.e037">equation (5</xref>); the thicker (red) line shows the portion that is used for the ‘normal’ PR cycle. (b) A magnified version of (a). The thin (blue) line shows the switch function (8). Panels (c),(d) and (e) show the behaviour of the homeostat, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e072" xlink:type="simple"/></inline-formula>, and the firing rates <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e073" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e074" xlink:type="simple"/></inline-formula> for the PR model (solid line) and the PR model with the hard switch (dashed line). The switch parameters are <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e075" xlink:type="simple"/></inline-formula> <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e076" xlink:type="simple"/></inline-formula> the mean firing rate of the neural population during wake; all other parameters are listed in the Tables section.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0103877.g003" position="float" xlink:type="simple"/></fig>
<p>Typical graphs of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e077" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e078" xlink:type="simple"/></inline-formula> for both the original PR model and the PR switch model are shown in <xref ref-type="fig" rid="pone-0103877-g003">Figure 3(c)</xref>–(e) demonstrating the close agreement between the two cases. Graphs comparing timeseries computed from the two-process model and numerical integrations of the corresponding PR/PR switch model are shown in <xref ref-type="fig" rid="pone-0103877-g004">Figure 4</xref>. The extremely good agreement of the two models is a result of the very large disparity in timescales between the fast and slow systems. Consequently, solutions of the PR model converge to solutions on the slow manifold on the timescale of minutes. Once on the slow manifold, solving the PR model is essentially equivalent to solving the two-process model.</p>
<fig id="pone-0103877-g004" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0103877.g004</object-id><label>Figure 4</label><caption>
<title>The two-process model compared to the two PR models.</title>
<p>(a) Comparison of the PR switch model with the two-process model. (b) Comparison of the PR model with the two-process model. Crosses show the two-process model; solid line the PR model and (blue) dashed line the PR switch model.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0103877.g004" position="float" xlink:type="simple"/></fig>
<p>In <xref ref-type="bibr" rid="pone.0103877-Phillips5">[31]</xref> it was recognised that the PR model could be plotted in a similar way to the two-process model, but the explicit connection between parameters was not made. It is stated that a key difference is that in the two-process model the value of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e079" xlink:type="simple"/></inline-formula> remains between the thresholds at all times, as in <xref ref-type="fig" rid="pone-0103877-g001">Figure 1</xref>. However, we note that this could be regarded as a matter of parameter choice rather than a fundamental difference between the two models: whether the two-process model remains between the thresholds depends on the relative gradients of the circadian and homeostatic processes at each wake/sleep or sleep/wake transition. <xref ref-type="fig" rid="pone-0103877-g004">Figure 4</xref> shows that, with the PR parameters used to model sleep regulation in humans, the two thresholds in the two-process model are very close, hence the circadian oscillation is the dominant sleep regulator and the two thresholds merge almost into one.</p>
<p>The link between the PR model and the two-process model not only gives us a physiological interpretation of the thresholds in the two-process model, it also allows us to gain a greater insight into the dynamics of the PR model, enabling understanding developed in the context of the two-process model to be interpreted in the physiological setting of the PR model. In the next sections, two different examples are discussed.</p>
</sec><sec id="s2d">
<title>Transitions from monophasic to polyphasic sleep</title>
<p>It is well-known that the two-process model can show a range of different sleep-wake cycles, including cycles that have multiple sleep episodes each day, see <xref ref-type="fig" rid="pone-0103877-g001">Figure 1(a)</xref>, and cycles that have a period greater than one day, see <xref ref-type="fig" rid="pone-0103877-g001">Figure 1(c)</xref>. Indeed in <xref ref-type="bibr" rid="pone.0103877-Daan1">[10]</xref>, the authors postulate that the two-process model can explain the polyphasic sleep of many animals. In <xref ref-type="bibr" rid="pone.0103877-Phillips2">[24]</xref>, it is shown that the sleep-wake cycles of many different mammals can be understood by varying two parameters in the PR model: the homeostatic time constant <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e080" xlink:type="simple"/></inline-formula> and the constant component to the VLPO drive, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e081" xlink:type="simple"/></inline-formula>. In the previous sections, we have demonstrated how the parameters of the PR model relate to those of the two-process model, specifically, the homeostatic time constant <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e082" xlink:type="simple"/></inline-formula> is present in both models and varying the drive to the VLPO <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e083" xlink:type="simple"/></inline-formula> corresponds to varying the upper and lower thresholds without changing the distance between them. In <xref ref-type="bibr" rid="pone.0103877-Nakao1">[29]</xref>, <xref ref-type="bibr" rid="pone.0103877-Nakao2">[ 30]</xref> it is shown that the two-process model can be understood as a one-dimensional map with discontinuities. In this section, we use this map to show how the observations in <xref ref-type="bibr" rid="pone.0103877-Phillips2">[24]</xref> and the postulate in <xref ref-type="bibr" rid="pone.0103877-Daan1">[10]</xref> are linked and clarify how the transition between different numbers of daily sleep episodes occurs.</p>
<p>First we introduce the one-dimensional map. Consider the two-process model and suppose we start on the upper threshold, at time <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e084" xlink:type="simple"/></inline-formula>, where the model switches from wake to sleep. The dynamics of the two-process model takes this starting point and, propagating it forward through one sleep and one wake episode, results in the next wake to sleep time, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e085" xlink:type="simple"/></inline-formula>, and then through a further sleep-wake episode to <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e086" xlink:type="simple"/></inline-formula> and so on, generating a sequence of sleep onset times <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e087" xlink:type="simple"/></inline-formula>. This is illustrated for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e088" xlink:type="simple"/></inline-formula> in <xref ref-type="fig" rid="pone-0103877-g005">Figure 5(a)</xref>. Different starting values <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e089" xlink:type="simple"/></inline-formula> generate different sequences of sleep times, as illustrated in <xref ref-type="fig" rid="pone-0103877-g005">Figure 5(b)</xref>. For the parameter values chosen here, all sequences converge rapidly to the same monophasic periodic cycle. A graphical way of understanding this sequence is to plot <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e090" xlink:type="simple"/></inline-formula> modulo 1 day against <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e091" xlink:type="simple"/></inline-formula> modulo 1 day (the first return map). For any particular starting value, the sequence of iterates can then be found by drawing the cobweb diagram, as shown in <xref ref-type="fig" rid="pone-0103877-g005">Figure 5(d)</xref>. A monophasic sleep pattern corresponds to <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e092" xlink:type="simple"/></inline-formula> modulo 1 day and so corresponds to the intersection of the diagonal line with the map. The fact that the sequences converge rapidly is related to the fact that the gradient of the map is close to zero for most values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e093" xlink:type="simple"/></inline-formula>. This rapid convergence means that a temporary change to timing of sleep will revert to the regular sleep-wake cycle within a few days.</p>
<fig id="pone-0103877-g005" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0103877.g005</object-id><label>Figure 5</label><caption>
<title>The one-dimensional map for the two-process model.</title>
<p>(a) A single trajectory of the two-process model showing successive times of sleep onset. (b) Trajectories of the two-process model for different initial sleep onset times. Each different sleep onset time results in a different sequence, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e094" xlink:type="simple"/></inline-formula>, but each sequence rapidly converges to the same sleep onset time, of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e095" xlink:type="simple"/></inline-formula> modulo 1 day. (c) A zoom of (b), showing only the trajectories for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e096" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e097" xlink:type="simple"/></inline-formula> (d) First return map for the two-process model. The black line shows the return map, in other words for any value of sleep onset time on day <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e098" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e099" xlink:type="simple"/></inline-formula> it shows the onset time of sleep on day <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e100" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e101" xlink:type="simple"/></inline-formula>. The grey diagonal line is the line along which <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e102" xlink:type="simple"/></inline-formula>. One typical trajectory is plotted for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e103" xlink:type="simple"/></inline-formula> showing the rapid convergence to the periodic cycle where <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e104" xlink:type="simple"/></inline-formula> modulo 1 day, the point at which the return map and the diagonal line intersect. The discontinuity is a result of the fact that neighbouring values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e105" xlink:type="simple"/></inline-formula> exist that lead to very different values for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e106" xlink:type="simple"/></inline-formula>, as shown in (c). Parameter values for the two-process model are based on the PR model for the human sleep-wake cycle and can be found in (15).</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0103877.g005" position="float" xlink:type="simple"/></fig>
<p>Phrasing the two-process model in these terms illustrates that it can be represented as a one-dimensional map. Probably the most well-known example of such maps is the logistic map <xref ref-type="bibr" rid="pone.0103877-May1">[32]</xref> which has been widely used to show that simple rules can lead to very complex dynamics. A distinctive feature of the two-process model is the fact that the map contains a discontinuity. For the parameter values shown in <xref ref-type="fig" rid="pone-0103877-g005">Figure 5(d)</xref> this discontinuity occurs at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e107" xlink:type="simple"/></inline-formula> The discontinuity is a consequence of the fact that there exist neighbouring starting values <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e108" xlink:type="simple"/></inline-formula> that lead to trajectories that follow very different paths. These occur whenever there are points that result in trajectories that become tangent to the thresholds. For example, starting at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e109" xlink:type="simple"/></inline-formula> the first sleep just misses the wake threshold at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e110" xlink:type="simple"/></inline-formula> so remains asleep until <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e111" xlink:type="simple"/></inline-formula> resulting in a sequence <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e112" xlink:type="simple"/></inline-formula>, as shown in <xref ref-type="fig" rid="pone-0103877-g005">Figures 5(b)</xref> and (c); whereas starting at the nearby value of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e113" xlink:type="simple"/></inline-formula> the trajectory hits, rather than misses, the sleep threshold and the resulting sequence is <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e114" xlink:type="simple"/></inline-formula>.</p>
<p>For the value of the clearance parameter <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e115" xlink:type="simple"/></inline-formula> used in <xref ref-type="fig" rid="pone-0103877-g005">Figure 5</xref>, the discontinuity does not have a significant impact on the dynamics and all trajectories converge rapidly to the same periodic cycle. However, the presence of the discontinuity is key to understanding the transition from monophasic to polyphasic sleep. This is illustrated in <xref ref-type="fig" rid="pone-0103877-g006">Figure 6(a)</xref>–(d), where a sequence of converged solutions to the two-process model are shown for decreasing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e116" xlink:type="simple"/></inline-formula>. For <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e117" xlink:type="simple"/></inline-formula> the sleep-wake cycle is monophasic, but in the wake episode the trajectory comes close to, but does not touch, the upper threshold (<xref ref-type="fig" rid="pone-0103877-g006">Figure 6(a)</xref>). If distance from the upper threshold is a measure of sleepiness during wake, this would correspond to a dip in alertness. If <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e118" xlink:type="simple"/></inline-formula> is reduced further, say to <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e119" xlink:type="simple"/></inline-formula> as shown in <xref ref-type="fig" rid="pone-0103877-g006">Figure 6(b)</xref>, then the wake trajectory does not only come close to, it touches the upper threshold resulting in a short nap and a sleep-wake cycle that is bi-phasic with one longer sleep and one short sleep. Decreasing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e120" xlink:type="simple"/></inline-formula> further results in a sequence of further tangencies each of which adds one additional sleep-wake episode. Such transitions are known as grazing bifurcations, tangent bifurcations, or border collision bifurcations and are characteristic of one-dimensional maps with discontinuities <xref ref-type="bibr" rid="pone.0103877-Nusse1">[33]</xref>–<xref ref-type="bibr" rid="pone.0103877-Jain1">[35]</xref>. In the return map, a grazing bifurcation occurs when the discontinuity in the map coincides with the diagonal line. They are responsible for period-adding transitions in the context of electronic circuits and here, we see, are responsible for sleep-episode-adding transitions. Such transitions have also been observed and analysed using one-dimensional maps in the context of understanding the dynamics of neurons <xref ref-type="bibr" rid="pone.0103877-LoFaro2">[36]</xref>, <xref ref-type="bibr" rid="pone.0103877-Coombes1">[ 37]</xref>.</p>
<fig id="pone-0103877-g006" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0103877.g006</object-id><label>Figure 6</label><caption>
<title>Varying the homeostatic constant.</title>
<p>Using the two-process model with parameters as indicated in (15). Figures (a)–(d) give sleep-wake cycles for different values of the homeostatic time constant <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e121" xlink:type="simple"/></inline-formula> (<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e122" xlink:type="simple"/></inline-formula> illustrating that reducing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e123" xlink:type="simple"/></inline-formula> results in more daily sleep episodes. (e) Sleep regions (shaded) as a function of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e124" xlink:type="simple"/></inline-formula>. Note that the circadian maximum occurs at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e125" xlink:type="simple"/></inline-formula></p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0103877.g006" position="float" xlink:type="simple"/></fig>
<p>The sleep-wake pattern for varying <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e126" xlink:type="simple"/></inline-formula> is shown in <xref ref-type="fig" rid="pone-0103877-g006">Figure 6(e)</xref>. For larger values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e127" xlink:type="simple"/></inline-formula> there is one episode of sleep each day: the model falls asleep exactly once and always at roughly the same time (<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e128" xlink:type="simple"/></inline-formula>). A grazing bifurcation occurs at around <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e129" xlink:type="simple"/></inline-formula> and results in a region between <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e130" xlink:type="simple"/></inline-formula> where sleep is bi-phasic with one longer and one shorter sleep each day (<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e131" xlink:type="simple"/></inline-formula>). A succession of further grazing bifurcations take place as <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e132" xlink:type="simple"/></inline-formula> is reduced, resulting in increasing numbers of daily sleep episodes. From <xref ref-type="fig" rid="pone-0103877-g006">Figure 6(e)</xref> we see there are intermediate regions between each value of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e133" xlink:type="simple"/></inline-formula>. For example, between the monophasic and biphasic region there is a small region around <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e134" xlink:type="simple"/></inline-formula> where the sleep pattern has a period of two days. This corresponds to a region where a grazing bifurcation has taken place, causing an extra sleep period on one day, but this extra sleep period is enough to mean that no additional sleep is needed on the following day. The sleep wake trajectory in this case is shown in <xref ref-type="fig" rid="pone-0103877-g007">Figure 7(a)</xref>. Similar behaviour is seen at each transition between different numbers of daily sleep episodes and is characteristic of such transitions in one-dimensional discontinuous maps <xref ref-type="bibr" rid="pone.0103877-Avrutin1">[38]</xref>: this is illustrated for the transition between two and three sleep episodes in <xref ref-type="fig" rid="pone-0103877-g007">Figures 7(b)</xref> and is a similar pattern of sleep to that shown in <xref ref-type="fig" rid="pone-0103877-g001">Figure 1(a)</xref> using parameters as in <xref ref-type="bibr" rid="pone.0103877-Daan1">[10]</xref>. In fact, as shown for one-dimensional discontinuous maps in <xref ref-type="bibr" rid="pone.0103877-Avrutin1">[38]</xref>, the situation is even more complicated: in <xref ref-type="fig" rid="pone-0103877-g001">Figure 1</xref> of <xref ref-type="bibr" rid="pone.0103877-Phillips3">[27]</xref> the first few layers of an infinite adding scheme are set out. This shows that, for example, the sequence of transitions from sleeping once a day to sleeping twice a day is <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e135" xlink:type="simple"/></inline-formula> <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e136" xlink:type="simple"/></inline-formula> <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e137" xlink:type="simple"/></inline-formula> <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e138" xlink:type="simple"/></inline-formula>, etc. Further discussion of the map is given in the <xref ref-type="supplementary-material" rid="pone.0103877.s001">Information S1</xref>.</p>
<fig id="pone-0103877-g007" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0103877.g007</object-id><label>Figure 7</label><caption>
<title>Sleep-wake cycles with a two day period.</title>
<p>Solutions of the two-process model showing periodicity on the period of two days. (a) <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e139" xlink:type="simple"/></inline-formula> (b) <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e140" xlink:type="simple"/></inline-formula> All other parameters are as in <xref ref-type="fig" rid="pone-0103877-g006">Figure 6</xref> and can be found in (15).</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0103877.g007" position="float" xlink:type="simple"/></fig>
<p>In <xref ref-type="bibr" rid="pone.0103877-Phillips2">[24]</xref>, the behaviour of the PR model is examined both as the time constant <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e141" xlink:type="simple"/></inline-formula> and the mean drive to the VLPO, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e142" xlink:type="simple"/></inline-formula> are varied. Our parameter equivalences between the PR model and the two-process model (9) show that increasing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e143" xlink:type="simple"/></inline-formula> is equivalent to increasing the upper and lower thresholds without changing the distance between them. One can then deduce for the two-process model that for low <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e144" xlink:type="simple"/></inline-formula>, the homeostat will never reach the lower threshold and no wake will occur. Similarly, for high <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e145" xlink:type="simple"/></inline-formula> no sleep will occur. For large values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e146" xlink:type="simple"/></inline-formula> (<inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e147" xlink:type="simple"/></inline-formula> greater than approximately <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e148" xlink:type="simple"/></inline-formula> the amount of daily sleep varies approximately linearly with the mean drive to the VLPO as shown in <xref ref-type="fig" rid="pone-0103877-g008">Figure 8(a)</xref> and observed in <xref ref-type="bibr" rid="pone.0103877-Phillips2">[24]</xref>. As seen before, the sleep-wake cycle is monophasic and is largely independent of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e149" xlink:type="simple"/></inline-formula> in this range. The actual transition between monophasic sleep and no sleep (or no wake) occurs through grazing bifurcations, where this time the grazing bifurcations result in periodic cycles that have wake (sleep) episodes of greater than 24 hours: examples of such cycles are evident in <xref ref-type="fig" rid="pone-0103877-g008">Figure 8(a)</xref> at the extremes of the values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e150" xlink:type="simple"/></inline-formula> that are shown. For smaller values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e151" xlink:type="simple"/></inline-formula> where polyphasic sleep exists, varying <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e152" xlink:type="simple"/></inline-formula> shows that, as the no sleep (or no wake) threshold are approached, grazing bifurcations result in ever decreasing numbers of sleep (wake) episodes until no sleep (no wake) occurs, see <xref ref-type="fig" rid="pone-0103877-g008">Figure 8(b)</xref>.</p>
<fig id="pone-0103877-g008" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0103877.g008</object-id><label>Figure 8</label><caption>
<title>Sleep timing in the two-process model.</title>
<p>The upper and lower thresholds are moved simultaneously via <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e153" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e154" xlink:type="simple"/></inline-formula> with (a) <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e155" xlink:type="simple"/></inline-formula> (b) <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e156" xlink:type="simple"/></inline-formula> and all other parameters as in (15). Note that mean VLPO drive equals <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e157" xlink:type="simple"/></inline-formula> for consistency with <xref ref-type="bibr" rid="pone.0103877-Phillips2">[24]</xref>. Sleep regions are shaded.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0103877.g008" position="float" xlink:type="simple"/></fig>
<p>In <xref ref-type="bibr" rid="pone.0103877-Phillips2">[24]</xref>, it was shown that the sleep of many mammalian species could be understood in the context of the PR model by varying just two, physiologically plausible, parameters: <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e158" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e159" xlink:type="simple"/></inline-formula>. Their results show: a sequence of transitions from monophasic to polyphasic sleep as the time constant <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e160" xlink:type="simple"/></inline-formula> is reduced but where total sleep daily sleep remains approximately constant; for fixed <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e161" xlink:type="simple"/></inline-formula> and varying mean drive to the VLPO a sequence of transitions from a state with no wake to a state with no sleep. By using the relationship between the PR model and the two-process model we see that reducing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e162" xlink:type="simple"/></inline-formula> results in a sequence of transitions from monophasic to polyphasic sleep through grazing bifurcations that successively add sleep episodes; at the transition between <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e163" xlink:type="simple"/></inline-formula> episodes of sleep and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e164" xlink:type="simple"/></inline-formula> episodes of sleep, there are regions where sleep alternates between <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e165" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e166" xlink:type="simple"/></inline-formula> daily episodes (examples of such trajectories for the PR model are shown in <xref ref-type="supplementary-material" rid="pone.0103877.s001">Information S1</xref>). The identified parameter equivalences show that changing the mean drive to the VLPO is equivalent to simultaneously shifting the upper and lower thresholds of the two-process model. The relation between the PR model and the two-process model shows how this inevitably leads to grazing bifurcations and ultimately cycles with either no sleep or no wake.</p>
<p>The quantitative agreement with <xref ref-type="bibr" rid="pone.0103877-Phillips2">[24]</xref> is close, but not exact: this is because we have chosen a fixed value for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e167" xlink:type="simple"/></inline-formula>, the upper asymptote, in the two-process model, the value to match the PR model for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e168" xlink:type="simple"/></inline-formula> Varying <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e169" xlink:type="simple"/></inline-formula> in the PR model results in a small change to the precise region of the switching function that is used, which in turn induces some change in the value of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e170" xlink:type="simple"/></inline-formula>. Since <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e171" xlink:type="simple"/></inline-formula> this results in some dependence of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e172" xlink:type="simple"/></inline-formula> on <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e173" xlink:type="simple"/></inline-formula> in the equivalent two-process model. One consequence is that the switch from monophasic sleep to biphasic sleep occurs at around <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e174" xlink:type="simple"/></inline-formula> for the two-process model instead of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e175" xlink:type="simple"/></inline-formula> for the PR model. More details can be found in the <xref ref-type="supplementary-material" rid="pone.0103877.s001">Information S1</xref>.</p>
</sec><sec id="s2e">
<title>Wake effort</title>
<p>Sleep deprivation experiments involve keeping subjects awake for an extended period of time during which cognitive and behavioural tests are undertaken to measure sleepiness and performance. One measure of sleepiness is the Karolinska Sleepiness Scale (KSS) score <xref ref-type="bibr" rid="pone.0103877-Akerstedt1">[39]</xref>. In <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref>, the concept of ‘wake effort’ is introduced for the PR model and good agreement between wake effort and experimental data on KSS scores is found. Wake effort corresponds to a change in the drive to the MA and is interpreted as a need to provide the MA with greater stimulation in order to maintain wake. Here, we show how this can be re-interpreted in the context of the two-process model.</p>
<p>Wake effort in <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref> is presented by considering the graph of the MA firing rate <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e176" xlink:type="simple"/></inline-formula> (or equivalently, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e177" xlink:type="simple"/></inline-formula>), against the drive to the VLPO, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e178" xlink:type="simple"/></inline-formula>. In a regular sleep-wake cycle, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e179" xlink:type="simple"/></inline-formula> follows a hysteretic loop, see <xref ref-type="fig" rid="pone-0103877-g009">Figure 9(a)</xref>, where the transition from wake to sleep occurs close to <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e180" xlink:type="simple"/></inline-formula> and the transition from sleep to wake occurs close to <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e181" xlink:type="simple"/></inline-formula>. During sleep deprivation, it is argued in <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref> that by increasing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e182" xlink:type="simple"/></inline-formula>, rather than switch from wake to sleep, it is possible to stabilise the ‘ghost’ of the wake state: the extent to which <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e183" xlink:type="simple"/></inline-formula> is increased is known as the wake effort. An alternative view of the same idea is to consider the <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e184" xlink:type="simple"/></inline-formula>-plane as shown in <xref ref-type="fig" rid="pone-0103877-g009">Figure 9(b)</xref> and recognise that <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e185" xlink:type="simple"/></inline-formula> are curves that divide the parameter plane into regions where only the wake state exists, only the sleep state exists, and a bistable region where both wake and sleep exist. There are also regions for low <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e186" xlink:type="simple"/></inline-formula> and high <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e187" xlink:type="simple"/></inline-formula>, where the two states cannot readily be distinguished. The region of relevance for the parameters used in <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref> is close to the bottom of the bistable region, and is shown in blow-up in <xref ref-type="fig" rid="pone-0103877-g009">Figure 9(c)</xref>. The horizontal line represents the normal sleep-wake cycle: the time dependence of the homeostatic and circadian processes result in <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e188" xlink:type="simple"/></inline-formula> oscillating backwards and forwards along the line, switching from wake to sleep for increasing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e189" xlink:type="simple"/></inline-formula> when <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e190" xlink:type="simple"/></inline-formula> and from sleep to wake for decreasing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e191" xlink:type="simple"/></inline-formula> when <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e192" xlink:type="simple"/></inline-formula>.</p>
<fig id="pone-0103877-g009" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0103877.g009</object-id><label>Figure 9</label><caption>
<title>Normal and deprived sleep in the PR model.</title>
<p>(a) Sleep-wake cycle showing the MA firing rate <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e193" xlink:type="simple"/></inline-formula> as a function of the drive to the VLPO <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e194" xlink:type="simple"/></inline-formula>. Over one cycle <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e195" xlink:type="simple"/></inline-formula> oscillates between high and low values. When <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e196" xlink:type="simple"/></inline-formula> is low, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e197" xlink:type="simple"/></inline-formula> is high and the model is in a wake state. When <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e198" xlink:type="simple"/></inline-formula> is high, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e199" xlink:type="simple"/></inline-formula> is low and the model is in a sleep state. The transitions from wake to sleep and sleep to wake occur at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e200" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e201" xlink:type="simple"/></inline-formula> respectively. The size of the hysteresis loop depends on <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e202" xlink:type="simple"/></inline-formula>, shrinking to nothing for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e203" xlink:type="simple"/></inline-formula> and for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e204" xlink:type="simple"/></inline-formula> (b) The path of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e205" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e206" xlink:type="simple"/></inline-formula> in the <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e207" xlink:type="simple"/></inline-formula> plane. <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e208" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e209" xlink:type="simple"/></inline-formula> do not exist for values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e210" xlink:type="simple"/></inline-formula> that are either less than <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e211" xlink:type="simple"/></inline-formula> or greater than <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e212" xlink:type="simple"/></inline-formula>. Consequently for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e213" xlink:type="simple"/></inline-formula> or <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e214" xlink:type="simple"/></inline-formula> increasing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e215" xlink:type="simple"/></inline-formula> will result in a smooth change from high <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e216" xlink:type="simple"/></inline-formula> (wake) to low <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e217" xlink:type="simple"/></inline-formula> (sleep) instead of the jump from one state to the other shown in (a). (c) A blow up of (b), with the ‘normal’ sleep-wake cycle superimposed. (d) The <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e218" xlink:type="simple"/></inline-formula> plane showing the wake trajectory in a sleep deprivation experiment.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0103877.g009" position="float" xlink:type="simple"/></fig>
<p>In sleep deprivation experiments, subjects are prevented from falling asleep at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e219" xlink:type="simple"/></inline-formula>. At this point, in order to remain awake the only alternatives that keep the system in the wake region are: decrease the drive to the VLPO, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e220" xlink:type="simple"/></inline-formula>; increase the drive to the MA, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e221" xlink:type="simple"/></inline-formula> or some combination of both of these. In <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref>, it is argued that in order to maintain wake it is necessary to stimulate the MA, and therefore <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e222" xlink:type="simple"/></inline-formula> is increased to remain on the ‘ghost state’, but this is equivalent to following the line <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e223" xlink:type="simple"/></inline-formula>. The additional amount by which the MA is stimulated, the wake effort, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e224" xlink:type="simple"/></inline-formula> is then <disp-formula id="pone.0103877.e225"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e225" xlink:type="simple"/></disp-formula></p>
<p>where <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e226" xlink:type="simple"/></inline-formula> is a function of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e227" xlink:type="simple"/></inline-formula> and is the solution of <xref ref-type="disp-formula" rid="pone.0103877.e323">equations (14</xref>) in the <xref ref-type="sec" rid="s4">Methods</xref> section.</p>
<p>In the two-process model, acute sleep deprivation is modelled as a continued increase in the homeostatic pressure. In <xref ref-type="bibr" rid="pone.0103877-Daan1">[10]</xref> this is interpreted as a suspension of the upper threshold, but with insight gained from the the PR model, we see that an alternative interpretation is that the upper threshold is continuously moved to keep the model in the wake state, as shown in <xref ref-type="fig" rid="pone-0103877-g010">Figure 10(a)</xref>. The wake effort is then related to the extent to which the threshold has to be moved, that is the quantity <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e228" xlink:type="simple"/></inline-formula> with the upper threshold <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e229" xlink:type="simple"/></inline-formula> as given by (3). This quantity is shown in <xref ref-type="fig" rid="pone-0103877-g010">Figure 10(b)</xref>. In the <xref ref-type="sec" rid="s4">Methods</xref> section it is shown that this relation is <disp-formula id="pone.0103877.e230"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e230" xlink:type="simple"/><label>(10)</label></disp-formula></p>
<fig id="pone-0103877-g010" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0103877.g010</object-id><label>Figure 10</label><caption>
<title>Sleep deprivation and the wake effort.</title>
<p>(a) The two-process model, showing the typical trajectory of the homeostatic pressure during a sleep deprivation experiment. Using the wake effort concept of <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref> suggests that the upper threshold moves simultaneously: the dashed line shows the position of the upper threshold after 4 days. (b) The difference between the homeostatic pressure and the value at the ‘normal’ threshold, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e231" xlink:type="simple"/></inline-formula>. (c) The wake effort computed from the two-process model (10) (solid line), the PR model as in <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref> using <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e232" xlink:type="simple"/></inline-formula> (crosses), the PR model with <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e233" xlink:type="simple"/></inline-formula> (dashed line). (d) The dependence of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e234" xlink:type="simple"/></inline-formula>, the upper asymptote, on time for the three different cases shown in (c). The downward spikes indicate that the model gets very close to falling asleep, hence <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e235" xlink:type="simple"/></inline-formula> gets very close to 0.</p>
</caption><graphic mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0103877.g010" position="float" xlink:type="simple"/></fig>
<p>This resulting wake effort computed from the two-process model is shown by the solid line in <xref ref-type="fig" rid="pone-0103877-g010">Figure 10(c)</xref> and agrees very well with the calculation of the wake effort from the PR model in <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref> (crosses).</p>
<p>The close to linear relationship (the quadratic term has a very small coefficient) between wake effort in the PR model and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e236" xlink:type="simple"/></inline-formula>, which is essentially the difference between the homeostatic pressure and the circadian oscillator, demonstrates that the wake effort used in <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref> is fundamentally similar to previous measures used to compare performance and sleepiness scores. The precise scaling relationship and the degree of nonlinearity is dependent on the shape of the bistable region in the <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e237" xlink:type="simple"/></inline-formula>-plane shown in <xref ref-type="fig" rid="pone-0103877-g009">Figure 9(b)</xref>, and on the choice of function for the dependence of the homeostatic process on the firing rate of the MA. In <xref ref-type="bibr" rid="pone.0103877-Phillips1">[17]</xref> and for many of the subsequent papers, the upper asymptote is give by <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e238" xlink:type="simple"/></inline-formula>. However, in <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref> the functional form <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e239" xlink:type="simple"/></inline-formula> is used in order to “limit the unrealistically high production rate at high <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e240" xlink:type="simple"/></inline-formula>”. This change in functional form has the effect of keeping <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e241" xlink:type="simple"/></inline-formula> approximately constant during wake, which is why the agreement between the wake effort as defined by <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref> agrees well with our analogous computation from the two-process model. This is illustrated in <xref ref-type="fig" rid="pone-0103877-g010">Figure 10(c)</xref> and (d) where the wake effort and the dependence of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e242" xlink:type="simple"/></inline-formula> on time are shown for the two-process model and for the PR model with the two different functional forms for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e243" xlink:type="simple"/></inline-formula>.</p>
<p>The shape of the bistable region in the <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e244" xlink:type="simple"/></inline-formula> plane shows that for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e245" xlink:type="simple"/></inline-formula> larger than about <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e246" xlink:type="simple"/></inline-formula> there is a transition from relatively small changes in <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e247" xlink:type="simple"/></inline-formula> needed to maintain wake to very large changes in <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e248" xlink:type="simple"/></inline-formula> needed to maintain wake; eventually it becomes impossible to maintain wake at all. While for typical parameters used in the PR model this transition occurs for infeasibly large values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e249" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e250" xlink:type="simple"/></inline-formula>, we note that the shape of the bistable region is dependent on the parameters within the firing function and the choice of firing function itself. Once fixed in <xref ref-type="bibr" rid="pone.0103877-Phillips5">[31]</xref> these parameters have largely been left unchanged: we will return to this point in the discussion.</p>
</sec></sec><sec id="s3">
<title>Discussion</title>
<p>The strengths of the two-process model have been its inclusion of the two fundamental processes that are believed to regulate the sleep-wake cycle along with its graphical simplicity. This has meant that it has been used extensively as a tool to understand the behaviour of the sleep-wake cycle, design experiments and interpret data <xref ref-type="bibr" rid="pone.0103877-Dijk1">[40]</xref>, <xref ref-type="bibr" rid="pone.0103877-Achermann1">[ 41]</xref>. A weakness is the difficulty in relating the threshold levels of the homeostatic pressure <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e251" xlink:type="simple"/></inline-formula> that result in switches between wake and sleep to physiological quantities.</p>
<p>The PR model was developed with the same two governing processes in mind, but introduced some physiological basis for the switching that occurs between wake and sleep. In recent years, this model has been extensively tested in a range of scenarios, some of which depend on the fast dynamics within the model, like the role of disturbances during sleep <xref ref-type="bibr" rid="pone.0103877-Fulcher1">[23]</xref>, but in many cases relying on the slow dynamics of the model. The four orders of magnitude between the neuronal timescale and the homeostatic/circadian times scales means that the timescale separation between the slow and fast dynamics is very good.</p>
<p>Here we have shown that the slow dynamics of the PR model can be explicitly related to the two-process model, which provides new perspectives on both the two-process model and the PR model. Using this relationship, new insight into the meaning of the two-process model has been gained. Specifically, the distance between the thresholds is related to the degree to which the MA inhibits the VLPO during wake and the values of the thresholds are related to the parameters associated with the modelling of the firing rates <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e252" xlink:type="simple"/></inline-formula>, the mean VLPO drive, and the strength of the homeostat. The parameter comparison also highlights the fact that there is no strong reason why the homeostatic pressure should remain between the thresholds in the two-process model, see for example <xref ref-type="fig" rid="pone-0103877-g004">Figure 4</xref>. For values between the thresholds, either sleep or wake can occur. Above the upper threshold, only sleep can occur: this could be viewed as a region of sleep, from which it is hard to wake up. Below the lower threshold, only wake can occur, representing times when it is difficult to fall asleep.</p>
<p>Motivated by the strong relationship between the two-process model and the slow dynamics of the PR model, we have re-visited the two-process model in order to gain insight on the dynamics of the PR model. By using the fact that the two-process model can be represented as a one-dimensional map with discontinuities we are able to interpret the transitions from monophasic to polyphasic sleep as grazing bifurcations. This provides the dynamical underpinning for the observation that the PR model gives a systematic framework which encompasses many different mammalian species and confirms the hypothesis of <xref ref-type="bibr" rid="pone.0103877-Daan1">[10]</xref> that such a framework could be present in the two-process model. Furthermore, it suggests that ‘typical’ transitions with varying clearance parameter, at least for the larger mammalian species with relatively large clearance parameters, will involve gaining or losing one sleep episode a day. We note that the sequence of transitions for increasing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e253" xlink:type="simple"/></inline-formula> is consistent with observations of changes in the daily sleep patterns of early childhood.</p>
<p>Varying the homeostatic time constant as shown in <xref ref-type="fig" rid="pone-0103877-g006">Figure 6(a)</xref> suggests that for large mammals (large <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e254" xlink:type="simple"/></inline-formula>) sleep regulation is dominated by the circadian rhythm. In contrast, as shown in <xref ref-type="fig" rid="pone-0103877-g006">Figure 6(d)</xref>, small mammals are more strongly driven by their metabolism and it is the homeostatic component that dominates. However, we note that the equivalence of the two models raises some interesting questions on accepted parameter values: in both models the homeostatic process is modelled in a similar way, with exponential decay during sleep and an exponential approach to an upper asymptote during wake. In the context of the two process model, accepted physiological markers for the homeostatic process are slow waves in the sleep EEG and theta activity in the EEG during wake respectively, both of which are readily measured. The time constants <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e255" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e256" xlink:type="simple"/></inline-formula> differ during wake and sleep and are measured to be <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e257" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e258" xlink:type="simple"/></inline-formula> in humans <xref ref-type="bibr" rid="pone.0103877-Borbly2">[11]</xref>. An important physiological question is the necessity for two different time constants for the homeostatic process, one for wake and one for sleep. Animal <xref ref-type="bibr" rid="pone.0103877-Franken1">[42]</xref> and human experiments <xref ref-type="bibr" rid="pone.0103877-Jenni1">[43]</xref> strongly suggest that the time constant during wakefulness varies with genetic background (animals) and during development (humans) whereas the time constant during sleep appears more invariant within species. In the context of the PR model, the homeostatic process represents the concentration of somnogenic factors such as adenosine, which are not easily accessible. During wake, adenosine is produced more quickly in the brain than it is cleared, decreasing the inhibition to the VLPO. A single value <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e259" xlink:type="simple"/></inline-formula> is taken in order to replicate typical sleep patterns for adult humans. Given that in both models, the homeostatic process plays a key role in determining patterns of sleep and wake, it would be interesting to extend the modelling of the homeostatic process in the PR model to allow <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e260" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e261" xlink:type="simple"/></inline-formula> to differ and determine whether a different parameterization of the PR model would lead to time constants in-line with measured values for the two process model.</p>
<p>The grazing bifurcations have been shown to occur as the clearance parameter <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e262" xlink:type="simple"/></inline-formula> and as the mean drive to the VLPO or equivalently, both the upper and lower thresholds, are simultaneously varied. However, it is clear that the tangencies between the sleep-wake trajectories and the thresholds that give rise to these bifurcations could also occur if the the distance between the thresholds (see <xref ref-type="bibr" rid="pone.0103877-Nakao1">[29]</xref>, <xref ref-type="bibr" rid="pone.0103877-Nakao2">[ 30]</xref>) or the upper and lower asymptotes of the homeostatic process are varied. A systematic study will be carried out elsewhere.</p>
<p>The two-process model has been compared with sleep deprivation experiments by assuming that the upper threshold is no longer present and that the sleep pressure continues to increase, with sleepiness linearly related to the difference between the homeostat and the circadian process. Here, we have demonstrated that the notion of ‘wake effort’ introduced in <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref> is a similar measure and is equivalent to imagining, not that the upper threshold has vanished, but that increasing the stimulation to the MA results in increasing the upper threshold in line with the increase in <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e263" xlink:type="simple"/></inline-formula>.</p>
<p>Similarly, one could also imagine a ‘sleep effort’ that would be required to keep the model asleep when it would naturally wake. This could be achieved by reducing the lower threshold in the two-process model or, equivalently, decreasing the stimulation to the MA, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e264" xlink:type="simple"/></inline-formula>. As can be seen from <xref ref-type="fig" rid="pone-0103877-g009">Figure 9(b)</xref>, the PR model parameters suggest that, while it is possible to extend the wake state significantly by increasing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e265" xlink:type="simple"/></inline-formula>, the capacity to extend the sleep state is more restricted. This observation is sensitive to the precise parameters and definition of the firing function. The asymmetry between sleep and wake is equivalent to the fact that in <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref>, the authors noted that the ‘sleep ghost’ is less prominent than the ‘wake ghost’.</p>
<p>The equivalence between the PR model on the slow timescale and the two-process model is exact when the firing function is a hard switch, but when the firing function is sigmoidal the equivalence is more subtle. This is because, in the PR model, the upper/lower asymptotes of the homeostatic process are modelled as a a function of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e266" xlink:type="simple"/></inline-formula> the firing rate of the MA. With a hard switch, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e267" xlink:type="simple"/></inline-formula> takes only two values, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e268" xlink:type="simple"/></inline-formula> or zero (similar to the two-process model), but with a sigmoid it varies continuously. Except in the neighbourhood of bifurcations, for monophasic sleep we have shown that one can fix the maximal value of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e269" xlink:type="simple"/></inline-formula> and the switching voltage <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e270" xlink:type="simple"/></inline-formula> such that the times when the homeostatic pressure reaches its extreme values in the PR and two-process models co-incide. The precise values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e271" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e272" xlink:type="simple"/></inline-formula> needed, and therefore the values of the asymptotes in the equivalent two-process model, depend to some extent on the other parameters in the model. In this paper we have taken the approach of fixing the values of the asymptotes as those needed to agree with the PR model for their ‘normal’ values of the parameters at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e273" xlink:type="simple"/></inline-formula> We have not then varied the asymptotes as other parameters are changed which means that the quantitative agreement between the results from the two-process model and the PR model are not exact. Nevertheless, the sequence of transitions and the underlying mechanism through grazing bifurcations carry over between the two models with only minor quantitative differences. In the case of the wake effort, the dependence of the upper asymptote on the firing rate in the PR model means that there is approximately a 10% difference in the wake effort between the two-process and PR models after four days.</p>
<p>However, the fact that implicit in the PR model is a non-constant asymptotic value for the homeostatic process has wider implications. Sleep deprivation experiments tend to show a leveling off of psychomotor vigilance test (PVT) scores over a period of a few days, similar to the levelling off seen in the wake effort shown in <xref ref-type="fig" rid="pone-0103877-g010">Figure 10</xref>. In contrast, chronic sleep restriction experiments, where subjects repeatedly are allowed less sleep than they need, tend to show a linear increase in PVT over the timescale of typical experiments. In order to explain this, in <xref ref-type="bibr" rid="pone.0103877-Avinash1">[13]</xref>, Avinash <italic>et al</italic> considered a two-process model but suggested that the upper and lower asymptotes varied with time. This idea was generalised in <xref ref-type="bibr" rid="pone.0103877-McCauley1">[14]</xref>. Both papers suggest that the time variation occurs through some longer timescale process. We note that within the context of the PR model, during sleep deprivation or chronic sleep restriction the values of the firing function will tend to increase, automatically inducing some time dependence in the values of the asymptotes.</p>
<p>The asymptotes and therefore the wake effort in the PR model are sensitive to the particular choice of the firing function and the functional dependence of the upper asymptote on <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e274" xlink:type="simple"/></inline-formula>. For parameter choices made in <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e275" xlink:type="simple"/></inline-formula>, like <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e276" xlink:type="simple"/></inline-formula>, depends approximately linearly on wake effort. However, note that the shape of the relation between <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e277" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e278" xlink:type="simple"/></inline-formula> shown in <xref ref-type="fig" rid="pone-0103877-g009">Figure 9</xref> means that for high <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e279" xlink:type="simple"/></inline-formula> there is a ‘corner’ where to stay awake longer means that a very large increase in <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e280" xlink:type="simple"/></inline-formula> is needed. This transition suggests that a critical change in behaviour for large wake effort, although it is unclear whether this could give an alternative explanation for the behaviour at extreme sleep restriction to the ‘bifurcation’ suggested by <xref ref-type="bibr" rid="pone.0103877-McCauley1">[14]</xref>. This corner can be further understood by re-examining the firing function shown in <xref ref-type="fig" rid="pone-0103877-g003">Figure 3</xref>. Since only a small part of the sigmoid is used under ‘normal’ conditions for the PR model, increasing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e281" xlink:type="simple"/></inline-formula> will result in an almost linear change to the range of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e282" xlink:type="simple"/></inline-formula>. However, once <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e283" xlink:type="simple"/></inline-formula> is large, it becomes increasing difficult to increase <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e284" xlink:type="simple"/></inline-formula> by increasing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e285" xlink:type="simple"/></inline-formula> and the corner in <xref ref-type="fig" rid="pone-0103877-g009">Figure 9</xref> corresponds to the flattening off of the relationship between <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e286" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e287" xlink:type="simple"/></inline-formula>. While this is beyond the physiological range of the parameters, this part of the PR model has been less constrained by physiological parameters or behaviour than many other features of the model and a different firing function could lead to a corner at more physiological values. The relationship between the two-process based model in <xref ref-type="bibr" rid="pone.0103877-McCauley1">[14]</xref>, the PR model and the modelling of sleep deprivation versus sleep restriction deserves further attention and will be the subject of a future paper.</p>
<p>In order to better understand sleep/wake regulation it is essential that models that incorporate neurophysiology are developed, analysed and used. However, as models become more complex two problems arise. Firstly they become difficult to analyse systematically, with large numbers of numerical simulations becoming the principle method used to establish the behaviour of the system. Secondly, there is a proliferation of parameters which cannot be easily determined experimentally. One consequence is that it becomes difficult to establish the relative merits of different models. By demonstrating that the two-process model and the PR model are essentially the same for sleep-wake phenomena on the slow time-scale of hours we have not only gained insight on the interpretation of both models but also established the mechanism for transitions between different patterns of sleep and wake in the PR model. This link also suggests some interesting avenues for future extensions of the PR model based on recent insights and research on the two-process and related models.</p>
</sec><sec id="s4" sec-type="methods">
<title>Methods</title>
<sec id="s4a">
<title>PR switch to two-process comparison</title>
<p>The equations for the PR switch model are <disp-formula id="pone.0103877.e288"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e288" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e289"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e289" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e290"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e290" xlink:type="simple"/><label>(11)</label></disp-formula>where <disp-formula id="pone.0103877.e291"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e291" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e292"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e292" xlink:type="simple"/></disp-formula></p>
<p>Since <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e293" xlink:type="simple"/></inline-formula> we introduce the small parameter <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e294" xlink:type="simple"/></inline-formula>, the fast time <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e295" xlink:type="simple"/></inline-formula> and the slow time <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e296" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e297" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e298" xlink:type="simple"/></inline-formula>. Then, at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e299" xlink:type="simple"/></inline-formula> (slow time) <xref ref-type="disp-formula" rid="pone.0103877.e290">equations (11</xref>) become <disp-formula id="pone.0103877.e300"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e300" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e301"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e301" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e302"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e302" xlink:type="simple"/><label>(12)</label></disp-formula>where <disp-formula id="pone.0103877.e303"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e303" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e304"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e304" xlink:type="simple"/></disp-formula></p>
<p>During wake, these have solution <disp-formula id="pone.0103877.e305"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e305" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e306"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e306" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e307"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e307" xlink:type="simple"/></disp-formula></p>
<p>During sleep, these have solution <disp-formula id="pone.0103877.e308"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e308" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e309"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e309" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e310"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e310" xlink:type="simple"/></disp-formula></p>
<p>Transitions between wake and sleep when <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e311" xlink:type="simple"/></inline-formula>, so the switch from wake to sleep occurs when <disp-formula id="pone.0103877.e312"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e312" xlink:type="simple"/></disp-formula>and from sleep to wake when <disp-formula id="pone.0103877.e313"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e313" xlink:type="simple"/></disp-formula></p>
<p>By comparison with <xref ref-type="disp-formula" rid="pone.0103877.e002">equations (1</xref>)–(4) we see that the two-process model and the dynamics of the PR switch model on the slow manifold are equivalent if <disp-formula id="pone.0103877.e314"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e314" xlink:type="simple"/><label>(13)</label></disp-formula><disp-formula id="pone.0103877.e315"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e315" xlink:type="simple"/></disp-formula></p>
</sec><sec id="s4b">
<title>PR to two-process comparison</title>
<p>On the slow manifold, the PR model is <disp-formula id="pone.0103877.e316"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e316" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e317"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e317" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e318"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e318" xlink:type="simple"/></disp-formula>where <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e319" xlink:type="simple"/></inline-formula> is given by <xref ref-type="disp-formula" rid="pone.0103877.e037">equation (5</xref>). For a fixed value of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e320" xlink:type="simple"/></inline-formula> these have one or three solutions, with the transition between one and three solutions happening at saddle-node bifurcations, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e321" xlink:type="simple"/></inline-formula> that satisfy <disp-formula id="pone.0103877.e322"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e322" xlink:type="simple"/></disp-formula><disp-formula id="pone.0103877.e323"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e323" xlink:type="simple"/><label>(14)</label></disp-formula><disp-formula id="pone.0103877.e324"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e324" xlink:type="simple"/></disp-formula></p>
<p>The values of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e325" xlink:type="simple"/></inline-formula> depend on <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e326" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e327" xlink:type="simple"/></inline-formula>, and for the values commonly used in the PR model and listed in <xref ref-type="table" rid="pone-0103877-t001">Table 1</xref> give <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e328" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e329" xlink:type="simple"/></inline-formula></p>
<table-wrap id="pone-0103877-t001" position="float"><object-id pub-id-type="doi">10.1371/journal.pone.0103877.t001</object-id><label>Table 1</label><caption>
<title>Typical parameter values for the PR model and the equivalent parameters for the PR model with a hard switch.</title>
</caption><alternatives><graphic id="pone-0103877-t001-1" position="float" mimetype="image" xlink:href="info:doi/10.1371/journal.pone.0103877.t001" xlink:type="simple"/>
<table><colgroup span="1"><col align="left" span="1"/><col align="center" span="1"/><col align="center" span="1"/></colgroup>
<thead>
<tr>
<td align="left" rowspan="1" colspan="1">Parameter</td>
<td align="left" rowspan="1" colspan="1">PR</td>
<td align="left" rowspan="1" colspan="1">PR switch</td>
</tr>
</thead>
<tbody>
<tr>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e330" xlink:type="simple"/></inline-formula> or <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e331" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e332" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e333" xlink:type="simple"/></inline-formula></td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e334" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e335" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e336" xlink:type="simple"/></inline-formula></td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e337" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e338" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1">-</td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e339" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e340" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e341" xlink:type="simple"/></inline-formula></td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e342" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e343" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e344" xlink:type="simple"/></inline-formula></td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e345" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e346" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e347" xlink:type="simple"/></inline-formula></td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e348" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e349" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e350" xlink:type="simple"/></inline-formula></td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e351" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e352" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e353" xlink:type="simple"/></inline-formula></td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e354" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e355" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e356" xlink:type="simple"/></inline-formula></td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e357" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e358" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e359" xlink:type="simple"/></inline-formula></td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e360" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e361" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e362" xlink:type="simple"/></inline-formula></td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e363" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e364" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e365" xlink:type="simple"/></inline-formula></td>
</tr>
<tr>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e366" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e367" xlink:type="simple"/></inline-formula></td>
<td align="left" rowspan="1" colspan="1"><inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e368" xlink:type="simple"/></inline-formula></td>
</tr>
</tbody>
</table>
</alternatives><table-wrap-foot><fn id="nt101"><label/><p>These values give the appropriate parameter values for the two-process model as in (15). The derivation of the values for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e369" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e370" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e371" xlink:type="simple"/></inline-formula> for the PR switch model are given in the <xref ref-type="sec" rid="s4">Methods</xref> section. All parameters have been defined to be positive, consequently some of the signs in <xref ref-type="disp-formula" rid="pone.0103877.e044">equations (6</xref>) are opposite to their original definitions in <xref ref-type="bibr" rid="pone.0103877-Phillips1">[17]</xref>. The mean component of the circadian drive in the PR model has been incorporated in the definition of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e372" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e373" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e374" xlink:type="simple"/></inline-formula>.</p></fn></table-wrap-foot></table-wrap>
<p>The sleep-wake cycle corresponds to slowly changing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e375" xlink:type="simple"/></inline-formula>, tracing out a path on the slow manifold as shown in <xref ref-type="fig" rid="pone-0103877-g009">Figure 9(a)</xref>. Transitions from wake to sleep and from sleep to wake occur close to <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e376" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e377" xlink:type="simple"/></inline-formula> respectively. In order to find parameter values for the two-process model that retain the maximum and minimum values and timings for the homeostatic process for monophasic sleep. Away from bifurcation points the following algorithm is followed:</p>
<p>• First the identification between the threshold values and the saddle node bifurcations in the PR model is made, leading to <disp-formula id="pone.0103877.e378"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e378" xlink:type="simple"/></disp-formula></p>
<p>• Numerically integrating the PR model during monophasic sleep results in trajectories for the homeostat that increase to a maximum during wake and decrease to a minimum during sleep, this gives values for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e379" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e380" xlink:type="simple"/></inline-formula>, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e381" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e382" xlink:type="simple"/></inline-formula>. These maximum and minimum values occur close to the switches from wake to sleep and sleep to wake respectively. During wake, the two-process model gives <disp-formula id="pone.0103877.e383"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e383" xlink:type="simple"/></disp-formula></p>
<p>Hence, taking <disp-formula id="pone.0103877.e384"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e384" xlink:type="simple"/></disp-formula>results in a trajectory for the two-process model that passes through the required values at the required times.</p>
<p>• One can do a similar matching for the decreasing <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e385" xlink:type="simple"/></inline-formula> phase to find a value for the lower asymptote. For the simulations presented here, the value of zero was taken for the lower asymptote.</p>
<p>By integrating the PR model with the typical parameter values listed in <xref ref-type="table" rid="pone-0103877-t001">Table 1</xref>, it is found that the minimum occurs at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e386" xlink:type="simple"/></inline-formula> and the maximum at <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e387" xlink:type="simple"/></inline-formula> This implies that in this case the parameter values for the two-process model are <disp-formula id="pone.0103877.e388"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e388" xlink:type="simple"/><label>(15)</label></disp-formula></p>
<p>Going back to the PR switch model and its link to the two-process model, we can now find expressions for the parameters <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e389" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e390" xlink:type="simple"/></inline-formula> such that it is close to the full PR model:</p>
<p>• Comparing the expression for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e391" xlink:type="simple"/></inline-formula> above with that for the PR switch model in (13), gives <disp-formula id="pone.0103877.e392"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e392" xlink:type="simple"/></disp-formula></p>
<p>• The relation for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e393" xlink:type="simple"/></inline-formula> in (13) gives <disp-formula id="pone.0103877.e394"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e394" xlink:type="simple"/></disp-formula></p>
<p>• Considering <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e395" xlink:type="simple"/></inline-formula> as given above with <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e396" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e397" xlink:type="simple"/></inline-formula> as in (13), leads to <disp-formula id="pone.0103877.e398"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e398" xlink:type="simple"/></disp-formula></p>
<p>Hence for the typical values of the PR parameters listed in <xref ref-type="table" rid="pone-0103877-t001">Table 1</xref> and used in <xref ref-type="fig" rid="pone-0103877-g004">Figure 4</xref>, <disp-formula id="pone.0103877.e399"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e399" xlink:type="simple"/></disp-formula></p>
<p>It is also necessary to take <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e400" xlink:type="simple"/></inline-formula> in the PR switch model, otherwise no switching occurs.</p>
</sec><sec id="s4c">
<title>The wake effort</title>
<p>Following <xref ref-type="bibr" rid="pone.0103877-Fulcher2">[25]</xref>, the additional amount by which the MA has to stimulated to follow the “wake ghost”, the wake effort, <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e401" xlink:type="simple"/></inline-formula> is <disp-formula id="pone.0103877.e402"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e402" xlink:type="simple"/></disp-formula>where <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e403" xlink:type="simple"/></inline-formula> is a function of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e404" xlink:type="simple"/></inline-formula> and is the solution of transition <xref ref-type="disp-formula" rid="pone.0103877.e323">equations (14</xref>) above. For the region of relevance shown in <xref ref-type="fig" rid="pone-0103877-g009">Figure 9</xref> (c) and (d), the relationship is close to linear with a small quadratic term and is well-approximated by <disp-formula id="pone.0103877.e405"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e405" xlink:type="simple"/></disp-formula></p>
<p>Using the explicit relationships between the parameters in the PR model and the two-process model, the moving of the threshold in the two-process model corresponds to a modified value for <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e406" xlink:type="simple"/></inline-formula> is given by <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e407" xlink:type="simple"/></inline-formula>, as <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e408" xlink:type="simple"/></inline-formula> and <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e409" xlink:type="simple"/></inline-formula>, the value of <inline-formula><inline-graphic xlink:href="info:doi/10.1371/journal.pone.0103877.e410" xlink:type="simple"/></inline-formula> if no wake effort is applied, so the wake effort for the two-process model is <disp-formula id="pone.0103877.e411"><graphic position="anchor" xlink:href="info:doi/10.1371/journal.pone.0103877.e411" xlink:type="simple"/><label>(16)</label></disp-formula></p>
</sec></sec><sec id="s5">
<title>Supporting Information</title>
<supplementary-material id="pone.0103877.s001" mimetype="application/pdf" xlink:href="info:doi/10.1371/journal.pone.0103877.s001" position="float" xlink:type="simple"><label>Information S1</label><caption>
<p>(PDF)</p>
</caption></supplementary-material></sec></body>
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