Glycolysis

Biology Pathways Complexity: medium

Description

Glycolysis: glucose is invested with two ATP and committed at phosphofructokinase-1, split into triose phosphates, then oxidized to yield NADH and a net two ATP and two pyruvate, with PFK-1 allosterically gated by the cell's energy charge.

Process Flowchart

graph TD N1["Glucose"] N2["Hexokinase -> G6P"] N3["Isomerize -> F6P"] N4["PFK-1 -> F1,6BP"] N5["Aldolase: 2 triose-P"] N6["GAPDH: NAD+ -> NADH"] N7["Payoff: ATP via PGK/PK"] N8{"Energy charge high?"} N9["2 Pyruvate (net 2 ATP)"] N1 --> N2 N2 --> N3 N3 --> N4 N4 --> N5 N5 --> N6 N6 --> N7 N7 --> N8 N8 -->|ATP high: inhib…| N4 N8 -->|proceed| N9 style N1 fill:#ff6b6b,color:#fff style N2 fill:#51cf66,color:#fff style N3 fill:#51cf66,color:#fff style N4 fill:#ffd43b,color:#000 style N5 fill:#51cf66,color:#fff style N6 fill:#51cf66,color:#fff style N7 fill:#51cf66,color:#fff style N8 fill:#74c0fc,color:#fff style N9 fill:#b197fc,color:#fff

Node provenance

Each step below is grounded in a cited source (hover a citation for the full title).

StepRoleSource
GlucoseTriggers & InputsBerg, J. M. et al. 2002
Hexokinase -> G6PProcessing & OperationsBerg, J. M. et al. 2002
Isomerize -> F6PProcessing & OperationsBerg, J. M. et al. 2002
PFK-1 -> F1,6BPStructures & ObjectsBar-Even, A. et al. 2012
Aldolase: 2 triose-PProcessing & OperationsBerg, J. M. et al. 2002
GAPDH: NAD+ -> NADHProcessing & OperationsBerg, J. M. et al. 2002
Payoff: ATP via PGK/PKProcessing & OperationsBerg, J. M. et al. 2002
Energy charge high?Intermediates & StatesLunt, S. Y. et al. 2011
2 Pyruvate (net 2 ATP)Products & OutputsBar-Even, A. et al. 2012

🎨 Color Scheme (5-Color System)

Red
Triggers & Inputs
Yellow
Structures & Objects
Green
Processing & Operations
Blue
Intermediates & States
Violet
Products & Outputs

Process Statistics

  • Nodes: 9
  • Edges: 9
  • Conditionals: 1
  • AND Gates: 1
  • OR Gates: 1
  • Total Gates: 2

Keywords

  • glycolysis
  • phosphofructokinase
  • atp
  • pyruvate
  • nadh

Sources & References

  • Biochemistry, 5th ed. — Glycolysis Is an Energy-Conversion Pathway
    Berg, J. M.; Tymoczko, J. L.; Stryer, L. , W. H. Freeman (NCBI Bookshelf, Section 16.1) (2002)
    View Source
  • Rethinking glycolysis: on the biochemical logic of metabolic pathways
    Bar-Even, A.; Flamholz, A.; Noor, E.; Milo, R. , Nature Chemical Biology (2012)
    DOI: 10.1038/nchembio.971
  • Aerobic glycolysis: meeting the metabolic requirements of cell proliferation
    Lunt, S. Y.; Vander Heiden, M. G. , Annual Review of Cell and Developmental Biology (2011)
    DOI: 10.1146/annurev-cellbio-092910-154237