Class org.broadinstitute.hellbender.tools.PrintReadsIntegrationTest

all > org.broadinstitute.hellbender.tools > PrintReadsIntegrationTest
7

tests
0

failures
0

ignored
26.476s

duration
100%

successful

Tests

Test Duration Result
testGCSInputsAndOutputs[0](org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.10000000-10000020.with.unmapped.bam, .bam, false, null) 1.977s passed
testGCSInputsAndOutputs[1](org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.10000000-10000020.with.unmapped.bam, .bam, true, null) 2.747s passed
testHttpPaths[0](https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam, https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai, [3:1000000-1000001, 3:1000003-1000100, 20:1099000-1100000], 528) 5.405s passed
testHttpPaths[1](https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1747672243&Signature=xSyBzjQL2AkBVNkjVCeaykYrS%2FLFRwfG3TIp6Jyc0KgghZ3J0i3sTGva2TD2%2Bvo5PZqKvhL9QOo%2B%2FUbOCBZzDZFcvXgMsT11%2Fz3C%2Bo8s5IwCYlCXeV3PrbJ5NMbNhvLr9HV3fBtSqhaHBKLPZPDxGyBlD4HcSabfonav7oIDRs3XMG4Zs2%2BAi0X9A4UP3miV3%2Fxz82RXqFqU1ncG%2FfMyTd1WLF64HhpkEbzaH5ElPlkE%2BHh%2B1drcv3aUQmEDAfp9DsG4xiI3CQAQ88%2FiXNfe7g%2Bzoe3vq2oPN8uiui7uIHeCJ7PqqRNBy1LDZcpUF5%2FZcBbug%2BNJzEPxcJXtOTKaGg%3D%3D, https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1747672243&Signature=sZarFxKN6X3iXGQCZRYna2eznvruNdWYqO9882t8Oj05txk1CU7t1kNPQMNxMEe9gSUWaX7Ycyy89YtYe0S7Sfh%2FQg10TiscL8UR%2BTtlSSbthpDpQhtgDTU6mGBdujWT21Wi12%2F6m2sfaVVH0%2BTzf9%2BwT6FPlDNz3jTVfIpmxSLWoNNwZ%2FyKoIYrqqfCONEqi%2BK1eeYCWPl6pm2KnA2rl9KNlaXptpsvL2FeI%2FTLwXlfwRWggIDHe4Pt8EclzoOIlExNU68oOjzA%2BOc5%2FHslws4kSgVv1GM8YoOWMNjR45UFQro3HCiYLsNVVJs7Bim5FfHeJf%2BdUxAEJzXbpoVUYg%3D%3D, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai, [3:1000000-1000001, 3:1000003-1000100, 20:1099000-1100000], 528) 3.216s passed
testHttpPaths[2](https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram, https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai, [20:9999902-10000000], 112) 2.246s passed
testHttpPaths[3](https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1747672243&Signature=qsblFgnpf8V6jmuo07eCBUYPv4V2Emj16gm27FZAh17f0lBqM%2FKjj16PmJtZBGL3zBL18fy6m4%2B0wUPvzMEgGbzhCEblQvBk9hdzOCI9B5b%2FTUjU7cN6liwzWCnIwST966Xoqf%2FeK0hNXjp1PUsvLMMDB%2FcLw6n3i6hEDhLJqJrD330Byu63%2BxrDQFa6LvkbD%2BCnDWF96EuSh6qOcwHuuFL7KSbMowik4asTUD1fZjcDoOMCROLR9ESEG7y16NGrnCFUAuGypz4HD0nzd7l99KJOF6w9HF3umU%2F2AZ9hPmfkrH7TUARWCpEOcKlNJnmnbq%2FkeUKZ4kEeC8qf3%2BFEcA%3D%3D, https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1747672243&Signature=OXuYf26e19u7xkh%2FZx13Th0briqLZBMflJopaIKWM9U0ZWl5h2zcCMqadpoKq%2BTayptrlK6UFx7WIJFx2yFqbKOAoCbIk6cvcf77F7wxUa56z0xt%2FBmmdBZMC2OeQyJDGdSYfUdXUNPnYAhvrEm2NRFxxZc7OZBVAbtgQWPnHnJ1juNv0rq0pUwnHr975aGNUCbkUJNNUFjvj%2BuWDc6K6IUre9L%2FdFmr06S1CjC8nCi92OSeT%2Bbc96G4p%2BHjk3qDt9vjgJbaHXITRLVdu3%2Fp4Oze48r9Rm54fWzE71XxfSKt8wDNpjTzl7aZVxleJC4IKxjlIsggAdlnMaE12%2FyhOA%3D%3D, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai, [20:9999902-10000000], 112) 1.564s passed
testPrintReadsWithReferenceBundle 9.321s passed

Standard error

[May 19, 2025 at 3:30:40 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:30:43 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:30:46 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.06 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:30:48 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:30:50 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:30:51 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:30:53 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:30:53 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:30:54 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:30:55 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=541065216
[May 19, 2025 at 3:31:03 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.09 minutes.
Runtime.totalMemory()=541065216