Test Summary

207

tests

1

failures

0

ignored

16m34.78s

duration

99%

successful

Packages

Package Tests Failures Ignored Duration Success rate
org.broadinstitute.hellbender.engine 21 0 0 25.357s 100%
org.broadinstitute.hellbender.engine.spark.datasources 1 0 0 2.628s 100%
org.broadinstitute.hellbender.metrics 3 0 0 1.319s 100%
org.broadinstitute.hellbender.testutils 1 0 0 2.496s 100%
org.broadinstitute.hellbender.tools 18 0 0 3m48.32s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections 8 0 0 25.219s 100%
org.broadinstitute.hellbender.tools.funcotator 5 0 0 0.790s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources 9 0 0 21.238s 100%
org.broadinstitute.hellbender.tools.genomicsdb 26 0 0 5m31.30s 100%
org.broadinstitute.hellbender.tools.reference 4 0 0 11.668s 100%
org.broadinstitute.hellbender.tools.spark 12 0 0 1m4.36s 100%
org.broadinstitute.hellbender.tools.spark.pipelines 6 0 0 2m6.08s 100%
org.broadinstitute.hellbender.tools.walkers.bqsr 14 0 0 47.176s 100%
org.broadinstitute.hellbender.tools.walkers.haplotypecaller 1 0 0 5.318s 100%
org.broadinstitute.hellbender.tools.walkers.variantutils 4 1 0 32.339s 75%
org.broadinstitute.hellbender.utils.gcs 19 0 0 5.622s 100%
org.broadinstitute.hellbender.utils.gvs.bigquery 8 0 0 18.814s 100%
org.broadinstitute.hellbender.utils.io 2 0 0 2.652s 100%
org.broadinstitute.hellbender.utils.nio 35 0 0 13.485s 100%
org.broadinstitute.hellbender.utils.read 8 0 0 27.040s 100%
org.broadinstitute.hellbender.utils.reference 1 0 0 0.264s 100%
org.broadinstitute.hellbender.utils.tsv 1 0 0 1.288s 100%

Classes

Class Tests Failures Ignored Duration Success rate
org.broadinstitute.hellbender.engine.FeatureInputUnitTest 8 0 0 0.155s 100%
org.broadinstitute.hellbender.engine.ReadWalkerGCSSupportIntegrationTest 6 0 0 15.493s 100%
org.broadinstitute.hellbender.engine.ReadsPathDataSourceUnitTest 1 0 0 0.849s 100%
org.broadinstitute.hellbender.engine.VariantWalkerGCSSupportIntegrationTest 6 0 0 8.860s 100%
org.broadinstitute.hellbender.engine.spark.datasources.ReadsSparkSourceUnitTest 1 0 0 2.628s 100%
org.broadinstitute.hellbender.metrics.MetricsUtilsTest 3 0 0 1.319s 100%
org.broadinstitute.hellbender.testutils.VariantContextTestUtilsUnitTest 1 0 0 2.496s 100%
org.broadinstitute.hellbender.tools.CRAMIssue8768DetectorIntegrationTest 7 0 0 2m0.32s 100%
org.broadinstitute.hellbender.tools.GatherVcfsCloudIntegrationTest 3 0 0 1m18.60s 100%
org.broadinstitute.hellbender.tools.IndexFeatureFileIntegrationTest 1 0 0 2.921s 100%
org.broadinstitute.hellbender.tools.PrintReadsIntegrationTest 7 0 0 26.476s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections.SimpleCountCollectionUnitTest 8 0 0 25.219s 100%
org.broadinstitute.hellbender.tools.funcotator.FuncotatorDataSourceDownloaderIntegrationTest 4 0 0 0.508s 100%
org.broadinstitute.hellbender.tools.funcotator.FuncotatorUtilsUnitTest 1 0 0 0.282s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.DataSourceUtilsUnitTest 1 0 0 2.125s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.DbSnpIntegrationTest 8 0 0 19.113s 100%
org.broadinstitute.hellbender.tools.genomicsdb.GenomicsDBImportIntegrationTest 26 0 0 5m31.30s 100%
org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibilityIntegrationTest 2 0 0 4.887s 100%
org.broadinstitute.hellbender.tools.reference.CompareReferencesIntegrationTest 2 0 0 6.781s 100%
org.broadinstitute.hellbender.tools.spark.BaseRecalibratorSparkIntegrationTest 9 0 0 57.806s 100%
org.broadinstitute.hellbender.tools.spark.ParallelCopyGCSDirectoryIntoHDFSSparkIntegrationTest 3 0 0 6.552s 100%
org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSparkIntegrationTest 4 0 0 1m34.89s 100%
org.broadinstitute.hellbender.tools.spark.pipelines.PrintVariantsSparkIntegrationTest 2 0 0 31.190s 100%
org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSRIntegrationTest 14 0 0 47.176s 100%
org.broadinstitute.hellbender.tools.walkers.haplotypecaller.HaplotypeCallerIntegrationTest 1 0 0 5.318s 100%
org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariantsIntegrationTest 4 1 0 32.339s 75%
org.broadinstitute.hellbender.utils.gcs.BucketUtilsUnitTest 19 0 0 5.622s 100%
org.broadinstitute.hellbender.utils.gvs.bigquery.BigQueryUtilsUnitTest 8 0 0 18.814s 100%
org.broadinstitute.hellbender.utils.io.IOUtilsUnitTest 2 0 0 2.652s 100%
org.broadinstitute.hellbender.utils.nio.GcsNioIntegrationTest 5 0 0 1.353s 100%
org.broadinstitute.hellbender.utils.nio.NioFileCopierWithProgressMeterResultsUnitTest 6 0 0 2.583s 100%
org.broadinstitute.hellbender.utils.nio.NioFileCopierWithProgressMeterUnitTest 23 0 0 9.419s 100%
org.broadinstitute.hellbender.utils.nio.PathLineIteratorUnitTest 1 0 0 0.130s 100%
org.broadinstitute.hellbender.utils.read.ReadUtilsIntegrationTest 8 0 0 27.040s 100%
org.broadinstitute.hellbender.utils.reference.ReferenceUtilsUnitTest 1 0 0 0.264s 100%
org.broadinstitute.hellbender.utils.tsv.SimpleCSVWriterWrapperWithHeaderUnitTest 1 0 0 1.288s 100%