Class org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSRIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyBQSRCloud[0](ApplyBQSR(args='')) |
6.159s |
passed |
| testApplyBQSRCloud[10](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30')) |
3.083s |
passed |
| testApplyBQSRCloud[11](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30--round-down-quantized')) |
3.038s |
passed |
| testApplyBQSRCloud[12](ApplyBQSR(args='--disable-sequence-dictionary-validationtrue')) |
3.355s |
passed |
| testApplyBQSRCloud[13](ApplyBQSR(args='--quantize-quals6--disable-sequence-dictionary-validationtrue')) |
3.196s |
passed |
| testApplyBQSRCloud[1](ApplyBQSR(args='-OQ')) |
3.474s |
passed |
| testApplyBQSRCloud[2](ApplyBQSR(args='--quantize-quals-1')) |
3.653s |
passed |
| testApplyBQSRCloud[3](ApplyBQSR(args='--quantize-quals6')) |
3.059s |
passed |
| testApplyBQSRCloud[4](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30')) |
3.044s |
passed |
| testApplyBQSRCloud[5](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30--round-down-quantized')) |
3.203s |
passed |
| testApplyBQSRCloud[6](ApplyBQSR(args='')) |
2.964s |
passed |
| testApplyBQSRCloud[7](ApplyBQSR(args='-OQ')) |
3.131s |
passed |
| testApplyBQSRCloud[8](ApplyBQSR(args='--quantize-quals-1')) |
2.917s |
passed |
| testApplyBQSRCloud[9](ApplyBQSR(args='--quantize-quals6')) |
2.900s |
passed |
Standard error
[May 19, 2025 at 3:45:36 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:45:40 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:45:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:45:47 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:45:50 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:45:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:45:56 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:45:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:46:02 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:46:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:46:08 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:46:11 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:46:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[May 19, 2025 at 3:46:17 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000