Class org.broadinstitute.hellbender.utils.read.ReadUtilsIntegrationTest

all > org.broadinstitute.hellbender.utils.read > ReadUtilsIntegrationTest
8

tests
0

failures
0

ignored
27.040s

duration
100%

successful

Tests

Test Duration Result
testCreatePathSAMWriter[0](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/print_reads.sam, src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/print_reads.fasta, .cram, false, true, true, false) 4.254s passed
testCreatePathSAMWriter[1](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/query_sorted.bam, null, .bam, false, true, true, false) 4.387s passed
testCreatePathSAMWriter[2](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/coordinate_sorted.bam, null, .bam, false, true, true, true) 2.153s passed
testCreatePathSAMWriter[3](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/query_sorted.bam, null, .bam, true, true, true, false) 4.515s passed
testCreatePathSAMWriter[4](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/coordinate_sorted.bam, null, .bam, true, true, true, true) 2.144s passed
testCreatePathSAMWriter[5](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/query_sorted.bam, null, .bam, true, true, false, false) 3.902s passed
testCreatePathSAMWriter[6](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/coordinate_sorted.bam, null, .bam, true, true, false, true) 1.728s passed
testCreatePathSAMWriter[7](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/coordinate_sorted.bam, null, .bam, true, false, false, false) 3.957s passed

Standard error

15:48:17.667 WARN  ReadUtils - Skipping index file creation for: staging/samWriterTest/fbb026e0-853d-4a38-833e-9832c7893022.cram. Index file creation requires reads in coordinate sorted order.
15:48:21.906 WARN  ReadUtils - Skipping index file creation for: staging/samWriterTest/603839b9-cd6f-49aa-8bf8-951b3e6e8590.bam. Index file creation requires reads in coordinate sorted order.
15:48:28.445 WARN  ReadUtils - Skipping index file creation for: staging/samWriterTest/24d5b307-f347-401a-ad7d-2b10aa92f8b9.bam. Index file creation requires reads in coordinate sorted order.
15:48:35.105 WARN  ReadUtils - Skipping index file creation for: staging/samWriterTest/bb757ea6-e112-4a26-9291-49e88b16baee.bam. Index file creation requires reads in coordinate sorted order.