Class org.broadinstitute.hellbender.cmdline.CommandLineProgramUnitTest

all > org.broadinstitute.hellbender.cmdline > CommandLineProgramUnitTest
10

tests
0

failures
0

ignored
0.020s

duration
100%

successful

Tests

Test Duration Result
testCustomValidationFailThrowsCommandLineException 0.002s passed
testGetCommandLine 0.005s passed
testGetUsage 0.002s passed
testListExpansionSuppression[0](/tmp/testExpansionSuppression6506342196176957627.list, this is a .list file) 0.002s passed
testListExpansionSuppression[1](/tmp/testExpansionSuppression9320285554181328962.args, this is a .args file) 0.001s passed
testListExpansion[0](/tmp/testExpansionSuppression16778749066067754231.list, this is a .list file) 0.005s passed
testListExpansion[1](/tmp/testExpansionSuppression13501384047436763620.args, this is a .args file) 0.002s passed
testToolMaturityLevel[0](org.broadinstitute.hellbender.cmdline.CommandLineProgramUnitTest$TestExperimentalTool@31ce271c, true, false, EXPERIMENTAL) 0s passed
testToolMaturityLevel[1](org.broadinstitute.hellbender.cmdline.CommandLineProgramUnitTest$TestBetaTool@64faf3d, false, true, BETA) 0.001s passed
testToolMaturityLevel[2](org.broadinstitute.hellbender.cmdline.CommandLineProgramUnitTest$TestProductionTool@648c80cb, false, false, null) 0s passed

Standard error

USAGE:  [arguments]

Usage: program [arguments...]

Version:4.6.1.0-11-gb2a05c7-SNAPSHOT

Optional Arguments:

--arguments_file <File>       read one or more arguments files and add them to the command line  This argument may be
                              specified 0 or more times. Default value: null. 

--gatk-config-file <String>   A configuration file to use with the GATK.  Default value: null. 

--gcs-max-retries,-gcs-retries <Integer>
                              If the GCS bucket channel errors out, how many times it will attempt to re-initiate the
                              connection  Default value: 20. 

--gcs-project-for-requester-pays <String>
                              Project to bill when accessing "requester pays" buckets. If unset, these buckets cannot be
                              accessed.  User must have storage.buckets.get permission on the bucket being accessed. 
                              Default value: . 

--help,-h <Boolean>           display the help message  Default value: false. Possible values: {true, false} 

--QUIET <Boolean>             Whether to suppress job-summary info on System.err.  Default value: false. Possible
                              values: {true, false} 

--tmp-dir <GATKPath>          Temp directory to use.  Default value: null. 

--use-jdk-deflater,-jdk-deflater <Boolean>
                              Whether to use the JdkDeflater (as opposed to IntelDeflater)  Default value: false.
                              Possible values: {true, false} 

--use-jdk-inflater,-jdk-inflater <Boolean>
                              Whether to use the JdkInflater (as opposed to IntelInflater)  Default value: false.
                              Possible values: {true, false} 

--verbosity <LogLevel>        Control verbosity of logging.  Default value: INFO. Possible values: {ERROR, WARNING,
                              INFO, DEBUG} 

--version <Boolean>           display the version number for this tool  Default value: false. Possible values: {true,
                              false} 


Advanced Arguments:

--showHidden <Boolean>        display hidden arguments  Default value: false. Possible values: {true, false}