Test Summary

286378

tests
1

failures
88

ignored
12m14.18s

duration
99%

successful

Ignored tests

Packages

Package Tests Failures Ignored Duration Success rate
org.broadinstitute.hellbender 5 0 0 1.663s 100%
org.broadinstitute.hellbender.cmdline 13 0 0 0.190s 100%
org.broadinstitute.hellbender.cmdline.GATKPlugin 104 0 0 5.738s 100%
org.broadinstitute.hellbender.cmdline.argumentcollections 60 0 0 0.119s 100%
org.broadinstitute.hellbender.engine 1101 0 0 16.179s 100%
org.broadinstitute.hellbender.engine.filters 457 0 0 0.621s 100%
org.broadinstitute.hellbender.engine.spark 33 0 0 1.567s 100%
org.broadinstitute.hellbender.engine.spark.datasources 133 0 81 3.758s 100%
org.broadinstitute.hellbender.metrics 12 0 0 0.012s 100%
org.broadinstitute.hellbender.testutils 97 1 2 0.164s 98%
org.broadinstitute.hellbender.tools 44 0 0 0.029s 100%
org.broadinstitute.hellbender.tools.copynumber.caller 1 0 0 0.007s 100%
org.broadinstitute.hellbender.tools.copynumber.denoising 1 0 0 0.127s 100%
org.broadinstitute.hellbender.tools.copynumber.formats 1 0 0 0s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections 35 0 0 0.084s 100%
org.broadinstitute.hellbender.tools.copynumber.gcnv 31 0 0 0.040s 100%
org.broadinstitute.hellbender.tools.copynumber.models 4 0 0 13.591s 100%
org.broadinstitute.hellbender.tools.copynumber.segmentation 5 0 0 0.660s 100%
org.broadinstitute.hellbender.tools.copynumber.utils.annotatedinterval 41 0 0 0.097s 100%
org.broadinstitute.hellbender.tools.copynumber.utils.genotyping 18 0 0 0.029s 100%
org.broadinstitute.hellbender.tools.copynumber.utils.germlinetagging 19 0 0 0.015s 100%
org.broadinstitute.hellbender.tools.copynumber.utils.optimization 10 0 0 0.002s 100%
org.broadinstitute.hellbender.tools.copynumber.utils.segmentation 17 0 0 0.267s 100%
org.broadinstitute.hellbender.tools.dragstr 84 0 0 6.236s 100%
org.broadinstitute.hellbender.tools.funcotator 820 0 0 1.690s 100%
org.broadinstitute.hellbender.tools.funcotator.compositeoutput 1 0 0 0.057s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources 7685 0 0 0.348s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.cosmic 14 0 0 0.094s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode 5259 0 0 6m27.29s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.vcf 45 0 0 0.948s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.xsv 3253 0 0 0.264s 100%
org.broadinstitute.hellbender.tools.funcotator.genelistoutput 23 0 0 0.065s 100%
org.broadinstitute.hellbender.tools.funcotator.mafOutput 127 0 0 17.593s 100%
org.broadinstitute.hellbender.tools.funcotator.metadata 4 0 0 0.009s 100%
org.broadinstitute.hellbender.tools.funcotator.simpletsvoutput 31 0 0 0.020s 100%
org.broadinstitute.hellbender.tools.funcotator.vcfOutput 1 0 0 0.057s 100%
org.broadinstitute.hellbender.tools.genomicsdb 36 0 0 0.011s 100%
org.broadinstitute.hellbender.tools.htsgetreader 11 0 0 0.027s 100%
org.broadinstitute.hellbender.tools.reference 19 0 0 0.015s 100%
org.broadinstitute.hellbender.tools.spark 13 0 0 0.004s 100%
org.broadinstitute.hellbender.tools.spark.pathseq 137 0 0 4.033s 100%
org.broadinstitute.hellbender.tools.spark.pathseq.loggers 2 0 0 0.094s 100%
org.broadinstitute.hellbender.tools.spark.pipelines.metrics 4 0 0 0.001s 100%
org.broadinstitute.hellbender.tools.spark.sv 992 0 0 0.203s 100%
org.broadinstitute.hellbender.tools.spark.sv.discovery 60 0 0 0.410s 100%
org.broadinstitute.hellbender.tools.spark.sv.discovery.alignment 2264 0 0 0.099s 100%
org.broadinstitute.hellbender.tools.spark.sv.discovery.inference 489 0 0 0.239s 100%
org.broadinstitute.hellbender.tools.spark.sv.evidence 40 0 0 3.883s 100%
org.broadinstitute.hellbender.tools.spark.sv.utils 1476 0 0 2.830s 100%
org.broadinstitute.hellbender.tools.spark.transforms.markduplicates 8 0 0 18.550s 100%
org.broadinstitute.hellbender.tools.spark.utils 26 0 0 2.277s 100%
org.broadinstitute.hellbender.tools.sv 132 0 0 0.119s 100%
org.broadinstitute.hellbender.tools.sv.cluster 309 0 0 1.312s 100%
org.broadinstitute.hellbender.tools.sv.concordance 74 0 0 0.039s 100%
org.broadinstitute.hellbender.tools.sv.stratify 97 0 0 0.818s 100%
org.broadinstitute.hellbender.tools.walkers 81 0 0 0.470s 100%
org.broadinstitute.hellbender.tools.walkers.annotator 563 0 0 5.537s 100%
org.broadinstitute.hellbender.tools.walkers.annotator.allelespecific 254 0 0 2.800s 100%
org.broadinstitute.hellbender.tools.walkers.annotator.flow 9 0 0 0.006s 100%
org.broadinstitute.hellbender.tools.walkers.bqsr 5 0 0 0.002s 100%
org.broadinstitute.hellbender.tools.walkers.consensus 5 0 0 0.005s 100%
org.broadinstitute.hellbender.tools.walkers.contamination 7 0 0 0.050s 100%
org.broadinstitute.hellbender.tools.walkers.featuremapping 7 0 0 0.001s 100%
org.broadinstitute.hellbender.tools.walkers.genotyper 298 0 0 4.179s 100%
org.broadinstitute.hellbender.tools.walkers.genotyper.afcalc 12 0 0 0.320s 100%
org.broadinstitute.hellbender.tools.walkers.gnarlyGenotyper 2 0 0 0.264s 100%
org.broadinstitute.hellbender.tools.walkers.haplotypecaller 2517 0 0 3.669s 100%
org.broadinstitute.hellbender.tools.walkers.haplotypecaller.graphs 4497 0 0 1.608s 100%
org.broadinstitute.hellbender.tools.walkers.haplotypecaller.readthreading 1257 0 0 2.913s 100%
org.broadinstitute.hellbender.tools.walkers.mutect 45 0 0 0.021s 100%
org.broadinstitute.hellbender.tools.walkers.mutect.filtering 47 0 0 0.334s 100%
org.broadinstitute.hellbender.tools.walkers.qc 2 0 0 0.002s 100%
org.broadinstitute.hellbender.tools.walkers.readorientation 17 0 0 2.493s 100%
org.broadinstitute.hellbender.tools.walkers.realignmentfilter 2 0 0 0.002s 100%
org.broadinstitute.hellbender.tools.walkers.rnaseq 221 0 0 1.196s 100%
org.broadinstitute.hellbender.tools.walkers.sv 129 0 0 0.379s 100%
org.broadinstitute.hellbender.tools.walkers.validation 2 0 0 0.002s 100%
org.broadinstitute.hellbender.tools.walkers.validation.basicshortmutpileup 32 0 0 0.060s 100%
org.broadinstitute.hellbender.tools.walkers.varianteval 42 0 0 0.016s 100%
org.broadinstitute.hellbender.tools.walkers.varianteval.stratifications.manager 168 0 0 0.049s 100%
org.broadinstitute.hellbender.tools.walkers.varianteval.util 69 0 0 0.008s 100%
org.broadinstitute.hellbender.tools.walkers.variantrecalling 2 0 0 0.497s 100%
org.broadinstitute.hellbender.tools.walkers.variantutils 351 0 0 2.374s 100%
org.broadinstitute.hellbender.tools.walkers.vqsr 18 0 0 0.218s 100%
org.broadinstitute.hellbender.tools.walkers.vqsr.scalable 3 0 0 0.036s 100%
org.broadinstitute.hellbender.transformers 75 0 0 0.050s 100%
org.broadinstitute.hellbender.utils 26637 0 0 15.427s 100%
org.broadinstitute.hellbender.utils.activityprofile 15240 0 0 8.503s 100%
org.broadinstitute.hellbender.utils.alignment 4 0 0 0.193s 100%
org.broadinstitute.hellbender.utils.baq 13 0 0 0.120s 100%
org.broadinstitute.hellbender.utils.bwa 1 0 0 0.007s 100%
org.broadinstitute.hellbender.utils.clipping 19 0 0 0.154s 100%
org.broadinstitute.hellbender.utils.codecs 40 0 0 0.006s 100%
org.broadinstitute.hellbender.utils.codecs.gtf 153 0 0 8.073s 100%
org.broadinstitute.hellbender.utils.codecs.refseq 1 0 0 0s 100%
org.broadinstitute.hellbender.utils.codecs.sampileup 40 0 0 0.001s 100%
org.broadinstitute.hellbender.utils.codecs.table 27 0 0 0.004s 100%
org.broadinstitute.hellbender.utils.codecs.xsvLocatableTable 42 0 0 0.047s 100%
org.broadinstitute.hellbender.utils.collections 528 0 0 1.114s 100%
org.broadinstitute.hellbender.utils.config 36 0 0 0.045s 100%
org.broadinstitute.hellbender.utils.downsampling 604 0 0 1.012s 100%
org.broadinstitute.hellbender.utils.dragstr 18 0 0 0.021s 100%
org.broadinstitute.hellbender.utils.fasta 40 0 0 17.747s 100%
org.broadinstitute.hellbender.utils.fragments 2400 0 0 0.055s 100%
org.broadinstitute.hellbender.utils.gcs 17 0 1 0.284s 100%
org.broadinstitute.hellbender.utils.genotyper 1109 0 0 0.364s 100%
org.broadinstitute.hellbender.utils.haplotype 154 0 0 0.230s 100%
org.broadinstitute.hellbender.utils.hdf5 12 0 0 3.327s 100%
org.broadinstitute.hellbender.utils.io 99 0 3 0.660s 100%
org.broadinstitute.hellbender.utils.iterators 49 0 0 0.044s 100%
org.broadinstitute.hellbender.utils.locusiterator 62447 0 0 17.361s 100%
org.broadinstitute.hellbender.utils.logging 4 0 0 0.002s 100%
org.broadinstitute.hellbender.utils.mcmc 28 0 0 5.709s 100%
org.broadinstitute.hellbender.utils.nio 45 0 0 0.013s 100%
org.broadinstitute.hellbender.utils.pairhmm 28123 0 0 1m9.44s 100%
org.broadinstitute.hellbender.utils.param 43 0 0 0.008s 100%
org.broadinstitute.hellbender.utils.pileup 31308 0 0 0.630s 100%
org.broadinstitute.hellbender.utils.read 72520 0 0 4.063s 100%
org.broadinstitute.hellbender.utils.read.markduplicates 7 0 0 0.006s 100%
org.broadinstitute.hellbender.utils.read.markduplicates.sparkrecords 8 0 0 0.003s 100%
org.broadinstitute.hellbender.utils.recalibration 2185 0 0 3.836s 100%
org.broadinstitute.hellbender.utils.recalibration.covariates 71 0 0 0.262s 100%
org.broadinstitute.hellbender.utils.reference 123 0 0 43.204s 100%
org.broadinstitute.hellbender.utils.report 23 0 0 0.016s 100%
org.broadinstitute.hellbender.utils.runtime 45 0 0 0.203s 100%
org.broadinstitute.hellbender.utils.samples 963 0 0 0.106s 100%
org.broadinstitute.hellbender.utils.smithwaterman 42 0 0 0.016s 100%
org.broadinstitute.hellbender.utils.spark 20 0 1 4.541s 100%
org.broadinstitute.hellbender.utils.svd 3 0 0 1.710s 100%
org.broadinstitute.hellbender.utils.text 7 0 0 0s 100%
org.broadinstitute.hellbender.utils.tsv 242 0 0 0.289s 100%
org.broadinstitute.hellbender.utils.variant 4231 0 0 1.041s 100%
org.broadinstitute.hellbender.utils.variant.writers 90 0 0 0.139s 100%

Classes

Class Tests Failures Ignored Duration Success rate
org.broadinstitute.hellbender.GitLfsTest 1 0 0 0.002s 100%
org.broadinstitute.hellbender.MainTest 4 0 0 1.661s 100%
org.broadinstitute.hellbender.cmdline.CommandLineProgramUnitTest 10 0 0 0.020s 100%
org.broadinstitute.hellbender.cmdline.DeprecatedToolsRegistryTest 2 0 0 0.170s 100%
org.broadinstitute.hellbender.cmdline.StandardArgumentDefinitionsUnitTest 1 0 0 0s 100%
org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest 48 0 0 2.947s 100%
org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKReadFilterPluginDescriptorTest 56 0 0 2.791s 100%
org.broadinstitute.hellbender.cmdline.argumentcollections.FeatureInputArgumentCollectionTest 2 0 0 0.002s 100%
org.broadinstitute.hellbender.cmdline.argumentcollections.IntervalArgumentCollectionUnitTest 48 0 0 0.111s 100%
org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalTextOutputArgumentCollectionUnitTest 2 0 0 0.002s 100%
org.broadinstitute.hellbender.cmdline.argumentcollections.ReadInputArgumentCollectionTest 2 0 0 0.003s 100%
org.broadinstitute.hellbender.cmdline.argumentcollections.ReferenceInputArgumentCollectionTest 3 0 0 0.001s 100%
org.broadinstitute.hellbender.cmdline.argumentcollections.SequenceDictionaryValidationArgumentCollectionTest 3 0 0 0s 100%
org.broadinstitute.hellbender.engine.AlignmentContextUnitTest 2 0 0 0.017s 100%
org.broadinstitute.hellbender.engine.AssemblyRegionIteratorUnitTest 4 0 0 12.841s 100%
org.broadinstitute.hellbender.engine.AssemblyRegionUnitTest 175 0 0 0.020s 100%
org.broadinstitute.hellbender.engine.CRAMSupportUnitTest 1 0 0 0.004s 100%
org.broadinstitute.hellbender.engine.FeatureContextUnitTest 5 0 0 0.005s 100%
org.broadinstitute.hellbender.engine.FeatureDataSourceUnitTest 100 0 0 0.257s 100%
org.broadinstitute.hellbender.engine.FeatureInputUnitTest 60 0 0 0.319s 100%
org.broadinstitute.hellbender.engine.FeatureManagerUnitTest 29 0 0 0.056s 100%
org.broadinstitute.hellbender.engine.GATKPathUnitTest 288 0 0 0.119s 100%
org.broadinstitute.hellbender.engine.GATKToolUnitTest 81 0 0 1.326s 100%
org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest 13 0 0 0.304s 100%
org.broadinstitute.hellbender.engine.LocusWalkerUnitTest 2 0 0 0.067s 100%
org.broadinstitute.hellbender.engine.MultiIntervalLocalReadShardUnitTest 25 0 0 0.006s 100%
org.broadinstitute.hellbender.engine.MultiVariantDataSourceUnitTest 38 0 0 0.108s 100%
org.broadinstitute.hellbender.engine.MultiVariantWalkerGroupedOnStartUnitTest 5 0 0 0.166s 100%
org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest 13 0 0 0.288s 100%
org.broadinstitute.hellbender.engine.MultiplePassVariantWalkerUnitTest 1 0 0 0.021s 100%
org.broadinstitute.hellbender.engine.ProgressMeterUnitTest 22 0 0 0.006s 100%
org.broadinstitute.hellbender.engine.ReadWalkerUnitTest 1 0 0 0.021s 100%
org.broadinstitute.hellbender.engine.ReadsContextUnitTest 8 0 0 0.002s 100%
org.broadinstitute.hellbender.engine.ReadsPathDataSourceUnitTest 90 0 0 0.091s 100%
org.broadinstitute.hellbender.engine.ReferenceContextUnitTest 45 0 0 0.018s 100%
org.broadinstitute.hellbender.engine.ReferenceDataSourceUnitTest 35 0 0 0.103s 100%
org.broadinstitute.hellbender.engine.ReferenceFileSourceUnitTest 3 0 0 0.005s 100%
org.broadinstitute.hellbender.engine.ReferenceMemorySourceTest 12 0 0 0.003s 100%
org.broadinstitute.hellbender.engine.ReferenceShardUnitTest 3 0 0 0.001s 100%
org.broadinstitute.hellbender.engine.ShardBoundaryUnitTest 9 0 0 0.001s 100%
org.broadinstitute.hellbender.engine.ShardToMultiIntervalShardAdapterUnitTest 5 0 0 0.001s 100%
org.broadinstitute.hellbender.engine.ShardUnitTest 23 0 0 0.003s 100%
org.broadinstitute.hellbender.engine.VariantShardUnitTest 3 0 0 0s 100%
org.broadinstitute.hellbender.engine.filters.AmbiguousBaseReadFilterTest 8 0 0 0s 100%
org.broadinstitute.hellbender.engine.filters.CountingReadFilterUnitTest 36 0 0 0.008s 100%
org.broadinstitute.hellbender.engine.filters.CountingVariantFilterUnitTest 30 0 0 0.003s 100%
org.broadinstitute.hellbender.engine.filters.ExcessiveEndClippedReadFilterUnitTest 29 0 0 0s 100%
org.broadinstitute.hellbender.engine.filters.FlowBasedTPAttributeSymetricReadFilterUnitTest 2 0 0 0s 100%
org.broadinstitute.hellbender.engine.filters.IntervalOverlapReadFilterTest 16 0 0 0.004s 100%
org.broadinstitute.hellbender.engine.filters.JexlExpressionReadTagValueFilterUnitTest 5 0 0 0.031s 100%
org.broadinstitute.hellbender.engine.filters.MetricsReadFilterUnitTest 5 0 0 0.319s 100%
org.broadinstitute.hellbender.engine.filters.NotOpticalDuplicateReadFilterTest 1 0 0 0s 100%
org.broadinstitute.hellbender.engine.filters.OverclippedReadFilterUnitTest 28 0 0 0.002s 100%
org.broadinstitute.hellbender.engine.filters.ReadFilterLibraryUnitTest 199 0 0 0.241s 100%
org.broadinstitute.hellbender.engine.filters.ReadFilterUnitTest 24 0 0 0.003s 100%
org.broadinstitute.hellbender.engine.filters.ReadGroupBlackListReadFilterUnitTest 19 0 0 0.003s 100%
org.broadinstitute.hellbender.engine.filters.ReadTagValueFilterUnitTest 3 0 0 0s 100%
org.broadinstitute.hellbender.engine.filters.SoftClippedReadFilterUnitTest 34 0 0 0.004s 100%
org.broadinstitute.hellbender.engine.filters.VariantFilterUnitTest 18 0 0 0.003s 100%
org.broadinstitute.hellbender.engine.spark.GATKSparkToolUnitTest 1 0 0 0.019s 100%
org.broadinstitute.hellbender.engine.spark.RangePartitionCoalescerUnitTest 3 0 0 0.003s 100%
org.broadinstitute.hellbender.engine.spark.SAMRecordSerializerUnitTest 2 0 0 0.173s 100%
org.broadinstitute.hellbender.engine.spark.SAMRecordToGATKReadAdapterSerializerUnitTest 3 0 0 0.024s 100%
org.broadinstitute.hellbender.engine.spark.SparkCommandLineArgumentCollectionTest 18 0 0 0s 100%
org.broadinstitute.hellbender.engine.spark.SparkContextFactoryUnitTest 1 0 0 0s 100%
org.broadinstitute.hellbender.engine.spark.SparkSharderUnitTest 5 0 0 1.348s 100%
org.broadinstitute.hellbender.engine.spark.datasources.ReadsSparkSinkUnitTest 47 0 47 0s -
org.broadinstitute.hellbender.engine.spark.datasources.ReadsSparkSourceUnitTest 28 0 2 3.264s 100%
org.broadinstitute.hellbender.engine.spark.datasources.ReferenceFileSparkSourceUnitTest 3 0 0 0.004s 100%
org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSourceUnitTest 2 0 0 0.041s 100%
org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSourceUnitTest 16 0 0 0.006s 100%
org.broadinstitute.hellbender.engine.spark.datasources.VariantsSparkSinkUnitTest 32 0 32 0s -
org.broadinstitute.hellbender.engine.spark.datasources.VariantsSparkSourceUnitTest 5 0 0 0.443s 100%
org.broadinstitute.hellbender.metrics.MultiLevelCollectorTest 6 0 0 0.008s 100%
org.broadinstitute.hellbender.metrics.MultiLevelReducibleCollectorUnitTest 6 0 0 0.004s 100%
org.broadinstitute.hellbender.testutils.ArgumentsBuilderTest 11 0 0 0.002s 100%
org.broadinstitute.hellbender.testutils.IntegrationTestSpecUnitTest 12 0 0 0.017s 100%
org.broadinstitute.hellbender.testutils.SamAssertionUtilsUnitTest 24 0 0 0.035s 100%
org.broadinstitute.hellbender.testutils.SamtoolsTestUtilsTest 4 1 2 0.001s 50%
org.broadinstitute.hellbender.testutils.VariantContextTestUtilsUnitTest 46 0 0 0.109s 100%
org.broadinstitute.hellbender.tools.AnalyzeSaturationMutagenesisUnitTest 23 0 0 0.008s 100%
org.broadinstitute.hellbender.tools.GatherVcfsCloudUnitTest 5 0 0 0.001s 100%
org.broadinstitute.hellbender.tools.LocalAssemblerUnitTest 15 0 0 0.017s 100%
org.broadinstitute.hellbender.tools.PrintDistantMatesUnitTest 1 0 0 0.003s 100%
org.broadinstitute.hellbender.tools.copynumber.caller.SimpleCopyRatioCallerUnitTest 1 0 0 0.007s 100%
org.broadinstitute.hellbender.tools.copynumber.denoising.GCBiasCorrectorUnitTest 1 0 0 0.127s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.CopyNumberFormatsUtilsUnitTest 1 0 0 0s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections.AbstractSampleLocatableCollectionUnitTest 8 0 0 0.007s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections.AllelicCountCollectionUnitTest 3 0 0 0.001s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections.AnnotatedIntervalCollectionUnitTest 5 0 0 0.004s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections.BaselineCopyNumberCollectionUnitTest 1 0 0 0.001s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections.HDF5SimpleCountCollectionUnitTest 1 0 0 0.037s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections.IntegerCopyNumberSegmentCollectionUnitTest 2 0 0 0.006s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections.SimpleCountCollectionUnitTest 8 0 0 0.019s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections.SimpleIntervalCollectionUnitTest 7 0 0 0.009s 100%
org.broadinstitute.hellbender.tools.copynumber.gcnv.GermlineCNVIntervalVariantComposerUnitTest 26 0 0 0.013s 100%
org.broadinstitute.hellbender.tools.copynumber.gcnv.GermlineCNVSegmentVariantComposerUnitTest 5 0 0 0.027s 100%
org.broadinstitute.hellbender.tools.copynumber.models.AlleleFractionInitializerUnitTest 1 0 0 0.420s 100%
org.broadinstitute.hellbender.tools.copynumber.models.AlleleFractionModellerUnitTest 1 0 0 5.002s 100%
org.broadinstitute.hellbender.tools.copynumber.models.CopyRatioModellerUnitTest 1 0 0 1.694s 100%
org.broadinstitute.hellbender.tools.copynumber.models.MultidimensionalModellerUnitTest 1 0 0 6.475s 100%
org.broadinstitute.hellbender.tools.copynumber.segmentation.AlleleFractionKernelSegmenterUnitTest 1 0 0 0.363s 100%
org.broadinstitute.hellbender.tools.copynumber.segmentation.CopyRatioKernelSegmenterUnitTest 1 0 0 0.038s 100%
org.broadinstitute.hellbender.tools.copynumber.segmentation.MultisampleMultidimensionalKernelSegmenterUnitTest 3 0 0 0.259s 100%
org.broadinstitute.hellbender.tools.copynumber.utils.annotatedinterval.AnnotatedIntervalCollectionUnitTest 14 0 0 0.061s 100%
org.broadinstitute.hellbender.tools.copynumber.utils.annotatedinterval.AnnotatedIntervalUnitTest 7 0 0 0.010s 100%
org.broadinstitute.hellbender.tools.copynumber.utils.annotatedinterval.AnnotatedIntervalUtilsUnitTest 17 0 0 0.010s 100%
org.broadinstitute.hellbender.tools.copynumber.utils.annotatedinterval.SimpleAnnotatedIntervalWriterUnitTest 3 0 0 0.016s 100%
org.broadinstitute.hellbender.tools.copynumber.utils.genotyping.NaiveHeterozygousPileupGenotypingUtilsUnitTest 18 0 0 0.029s 100%
org.broadinstitute.hellbender.tools.copynumber.utils.germlinetagging.SimpleGermlineTaggerUnitTest 19 0 0 0.015s 100%
org.broadinstitute.hellbender.tools.copynumber.utils.optimization.PersistenceOptimizerUnitTest 10 0 0 0.002s 100%
org.broadinstitute.hellbender.tools.copynumber.utils.segmentation.KernelSegmenterUnitTest 17 0 0 0.267s 100%
org.broadinstitute.hellbender.tools.dragstr.DragstrLocusUnitTest 1 0 0 0.259s 100%
org.broadinstitute.hellbender.tools.dragstr.DragstrParametersEstimatorTest 1 0 0 5.912s 100%
org.broadinstitute.hellbender.tools.dragstr.InterleavingListSpliteratorUnitTest 82 0 0 0.065s 100%
org.broadinstitute.hellbender.tools.funcotator.AliasProviderUnitTest 6 0 0 0.004s 100%
org.broadinstitute.hellbender.tools.funcotator.AnnotatedIntervalToSegmentVariantContextConverterUnitTest 4 0 0 0.079s 100%
org.broadinstitute.hellbender.tools.funcotator.FuncotationMapUnitTest 46 0 0 1.276s 100%
org.broadinstitute.hellbender.tools.funcotator.FuncotationUnitTest 1 0 0 0.059s 100%
org.broadinstitute.hellbender.tools.funcotator.FuncotatorEngineUnitTest 1 0 0 0.101s 100%
org.broadinstitute.hellbender.tools.funcotator.FuncotatorUnitTest 2 0 0 0.001s 100%
org.broadinstitute.hellbender.tools.funcotator.FuncotatorUtilsUnitTest 699 0 0 0.070s 100%
org.broadinstitute.hellbender.tools.funcotator.ProteinChangeInfoUnitTest 61 0 0 0.100s 100%
org.broadinstitute.hellbender.tools.funcotator.compositeoutput.CompositeOutputRendererUnitTest 1 0 0 0.057s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.DataSourceUtilsUnitTest 7630 0 0 0.344s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.LocatableFuncotationCreatorUnitTest 1 0 0 0.001s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.TableFuncotationUnitTest 54 0 0 0.003s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.cosmic.CosmicFuncotationFactoryUnitTest 14 0 0 0.094s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotationFactoryUnitTest 5159 0 0 6m27.28s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotationUnitTest 50 0 0 0.002s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.SegmentExonUtilsUnitTest 50 0 0 0.007s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.vcf.VcfFuncotationFactoryUnitTest 45 0 0 0.948s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.xsv.LocatableXsvFuncotationFactoryUnitTest 21 0 0 0.022s 100%
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