Class org.broadinstitute.hellbender.engine.spark.datasources.VariantsSparkSinkUnitTest

all > org.broadinstitute.hellbender.engine.spark.datasources > VariantsSparkSinkUnitTest
32

tests
0

failures
32

ignored
0s

duration
-

successful

Tests

Test Duration Result
testBrokenGVCFCasesAreDisallowed[0](false, .bcf) - ignored
testBrokenGVCFCasesAreDisallowed[1](false, .bcf.gz) - ignored
testBrokenGVCFCasesAreDisallowed[2](true, .g.bcf) - ignored
testBrokenGVCFCasesAreDisallowed[3](true, .g.bcf.gz) - ignored
testEnableDisableGVCFWriting[0](false, .vcf) - ignored
testEnableDisableGVCFWriting[1](false, .vcf.gz) - ignored
testEnableDisableGVCFWriting[2](true, .g.vcf) - ignored
testEnableDisableGVCFWriting[3](true, .g.vcf.gz) - ignored
testWritingToAnExistingFileHDFS[0](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf, true) - ignored
testWritingToAnExistingFileHDFS[1](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.bgz, true) - ignored
testWritingToAnExistingFileHDFS[2](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.bgz, false) - ignored
testWritingToAnExistingFileHDFS[3](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.gz, true) - ignored
testWritingToAnExistingFileHDFS[4](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.gz, false) - ignored
testWritingToAnExistingFileHDFS[5](/gatkCloneMountPoint/src/test/resources/HSA19.dbsnp135.chr1_1M.exome_intervals.modified.vcf, .vcf, true) - ignored
testWritingToFileURL[0](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf, true) - ignored
testWritingToFileURL[1](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.bgz, true) - ignored
testWritingToFileURL[2](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.bgz, false) - ignored
testWritingToFileURL[3](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.gz, true) - ignored
testWritingToFileURL[4](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.gz, false) - ignored
testWritingToFileURL[5](/gatkCloneMountPoint/src/test/resources/HSA19.dbsnp135.chr1_1M.exome_intervals.modified.vcf, .vcf, true) - ignored
variantsSinkHDFSTest[0](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf, true) - ignored
variantsSinkHDFSTest[1](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.bgz, true) - ignored
variantsSinkHDFSTest[2](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.bgz, false) - ignored
variantsSinkHDFSTest[3](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.gz, true) - ignored
variantsSinkHDFSTest[4](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.gz, false) - ignored
variantsSinkHDFSTest[5](/gatkCloneMountPoint/src/test/resources/HSA19.dbsnp135.chr1_1M.exome_intervals.modified.vcf, .vcf, true) - ignored
variantsSinkTest[0](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf, true) - ignored
variantsSinkTest[1](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.bgz, true) - ignored
variantsSinkTest[2](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.bgz, false) - ignored
variantsSinkTest[3](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.gz, true) - ignored
variantsSinkTest[4](/gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf, .vcf.gz, false) - ignored
variantsSinkTest[5](/gatkCloneMountPoint/src/test/resources/HSA19.dbsnp135.chr1_1M.exome_intervals.modified.vcf, .vcf, true) - ignored

Standard error

20:25:28.323 INFO  BlockManagerInfo - Removed broadcast_88_piece0 on localhost:39477 in memory (size: 183.0 B, free: 1919.4 MiB)
20:25:28.324 INFO  BlockManagerInfo - Removed broadcast_95_piece0 on localhost:39477 in memory (size: 50.0 KiB, free: 1919.4 MiB)
20:25:28.326 INFO  BlockManagerInfo - Removed broadcast_98_piece0 on localhost:39477 in memory (size: 50.1 KiB, free: 1919.5 MiB)
20:25:28.327 INFO  BlockManagerInfo - Removed broadcast_91_piece0 on localhost:39477 in memory (size: 50.1 KiB, free: 1919.5 MiB)