Class org.broadinstitute.hellbender.tools.copynumber.formats.collections.SimpleIntervalCollectionUnitTest

all > org.broadinstitute.hellbender.tools.copynumber.formats.collections > SimpleIntervalCollectionUnitTest
7

tests
0

failures
0

ignored
0.009s

duration
100%

successful

Tests

Test Duration Result
testSimpleIntervalCollectionSortedOrderBadInput[0]([AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:5 length:16837141 md5:a67eacb6a1311403c974dee943c0dad8)}, records=[1:30365-30503, 1:69088-70010, 1:367656-368599, 1:621093-622036, 1:861319-861395, 1:865532-865718, 1:866416-866471, 1:871149-871278, 1:874417-874511, 1:874652-874842, 1:876521-876688, 1:877513-877633, 1:877787-877870, 1:877936-878440, 1:878630-878759, 1:879075-879190, 1:879285-879535, 1:880071-880182, 1:880434-880528, 1:880895-881035, 1:881550-881668, 1:881779-881927, 1:883508-883614, 1:883867-883985, 1:886504-886620, 1:887377-887521, 1:887789-887982, 1:888552-888670, 1:889159-889274, 1:889381-889464, 1:891300-891395, 1:891472-891597, 1:892271-892407, 1:892476-892655, 1:894306-894463, 1:894592-894622, 1:896071-896182, 1:896670-896934, 1:897006-897132, 1:897203-897429, 1:897732-897853, 1:898081-898299, 1:898486-898635, 1:898714-898886, 1:899297-899390, 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testSimpleIntervalCollectionSortedOrderBadInput[1]([AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:5 length:16837141 md5:a67eacb6a1311403c974dee943c0dad8)}, records=[X:1551159-1551272, X:1553912-1553978, X:1554584-1554653, X:1557987-1558039, X:1561076-1561212, X:1571638-1571735, X:1584369-1585453, X:1712353-1713119, X:1714274-1714427, X:1718082-1718327, X:1719549-1720489, X:1734090-1734163, X:1742029-1742208, X:1743159-1743293, X:1746593-1746666, X:1748711-1748834, X:1752040-1752185, X:1755328-1755455, X:1761693-1761909, X:2139079-2139272, X:2161061-2161273, X:2184778-2184990, X:2209540-2209646, X:2326783-2326856, X:2343235-2343347, X:2406673-2408762, X:2418351-2418691, X:2418855-2418968, X:2609399-2609470, X:2609828-2609992, X:2632460-2632497, X:2635643-2635695, X:2637699-2637748, X:2638394-2638467, X:2640665-2640717, X:2641352-2641407, X:2644298-2644416, X:2644480-2644485, X:2645333-2645384, X:2651397-2651405, 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0s passed
testSimpleIntervalCollectionSortedOrderBadInput[2]([AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:5 length:16837141 md5:a67eacb6a1311403c974dee943c0dad8)}, records=[X:1551159-1551272, X:1553912-1553978, X:1554584-1554653, X:1557987-1558039, X:1561076-1561212, X:1571638-1571735, X:1584369-1585453, X:1712353-1713119, X:1714274-1714427, X:1718082-1718327, X:1719549-1720489, X:1734090-1734163, X:1742029-1742208, X:1743159-1743293, X:1746593-1746666, X:1748711-1748834, X:1752040-1752185, X:1755328-1755455, X:1761693-1761909, X:2139079-2139272, X:2161061-2161273, X:2184778-2184990, X:2209540-2209646, X:2326783-2326856, X:2343235-2343347, X:2406673-2408762, X:2418351-2418691, X:2418855-2418968, X:2609399-2609470, X:2609828-2609992, X:2632460-2632497, X:2635643-2635695, X:2637699-2637748, X:2638394-2638467, X:2640665-2640717, X:2641352-2641407, X:2644298-2644416, X:2644480-2644485, X:2645333-2645384, X:2651397-2651405, 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3:2924826-2924933, 3:2928721-2928910, 3:2942366-2942507, 3:2944557-2944691, 3:2967310-2967465, 3:3030026-3030158, 3:3067783-3067963, 3:3072536-3072661, 3:3076313-3076476, 3:3078860-3079014, 3:3080614-3080689, 3:3081718-3081957, 3:3083991-3084108, 3:3084658-3084849, 3:3085273-3085390, 3:3095488-3095661, 3:3097801-3097906, 3:3111906-3111997, 3:3116463-3116552, 3:3118212-3118313, 3:3131924-3131942, 3:3133905-3134048, 3:3136980-3137130, 3:3139551-3139743, 3:3139818-3139976, 3:3143373-3143516, 3:3144356-3144506, 3:3146584-3146670, 3:3170722-3170874, 3:3178941-3179139, 3:3182191-3182334, 3:3186265-3186396, 3:3188111-3188309, 3:3189131-3189389, 3:3189587-3189840, 3:3192546-3192731, 3:3194137-3194273, 3:3195105-3195174, 3:3195641-3195761, 3:3196428-3196517, 3:3197900-3197967, 3:3209315-3209479, 3:3214457-3214611, 3:3215740-3215947, 3:3216844-3216955, 3:3221302-3221373, 3:3886323-3888478, 3:4345091-4345212, 3:4354579-4355447, 3:4357893-4358932, 3:4403825-4403940, 3:4418011-4418075, 3:4452546-4452664, 3:4458809-4458928, 3:4459691-4459818, 3:4461745-4461832, 3:4490947-4491026, X:200852-200983, X:205397-205538, X:207312-207445, X:208163-208323, X:209699-209887, X:215761-216004, X:221740-221864, X:224026-224179, X:224398-224547, X:228085-228294, X:229432-229591, X:230816-230887, X:295099-295254, X:299336-299447, X:299510-299633, X:301497-301677, X:302039-302133, X:302615-302668, X:306248-306409, X:306906-306997, X:307433-307512, X:307966-308073, X:308322-308430, X:320579-320580, X:322137-322327, X:334266-334506, X:347100-347428, X:591630-591911, X:595350-595563, X:601553-601615, X:601731-601824, X:605123-605373, X:1314893-1315014, X:1317418-1317581, X:1321271-1321405, X:1325325-1325492, X:1327698-1327801, X:1331448-1331527, X:1401594-1401674, X:1404668-1404815, X:1407409-1407537, X:1407649-1407783, X:1409227-1409404, X:1413218-1413356, X:1414317-1414351, X:1419381-1419521, X:1422813-1422914, X:1424336-1424422, X:1428292-1428484, X:1460656-1460724, X:1464206-1464329, X:1467321-1467440, X:1470990-1471127, X:1471212-1471401, X:1475111-1475231, X:1477751-1477782, X:1484028-1484147, X:1497549-1497659, X:1499913-1499999, X:1501281-1501360, X:1505492-1505654, X:1506169-1506314, X:1508131-1508622, X:1510789-1510904, X:1522159-1522384, X:1531622-1531749, X:1536863-1537011, X:1537872-1538009, X:1540548-1540737, X:1544415-1544582, X:1546624-1547016]}]) 0.002s passed
testSimpleIntervalCollectionSortedOrderBadInput[3]([AbstractRecordCollection{metadata=SimpleLocatableMetadata{sequenceDictionary=SAMSequenceDictionary:( sequences:6 length:16837151 md5:729a04bc15f91c2575a9cfc338f76e0c)}, records=[1:30365-30503, 1:69088-70010, 1:367656-368599, 1:621093-622036, 1:861319-861395, 1:865532-865718, 1:866416-866471, 1:871149-871278, 1:874417-874511, 1:874652-874842, 1:876521-876688, 1:877513-877633, 1:877787-877870, 1:877936-878440, 1:878630-878759, 1:879075-879190, 1:879285-879535, 1:880071-880182, 1:880434-880528, 1:880895-881035, 1:881550-881668, 1:881779-881927, 1:883508-883614, 1:883867-883985, 1:886504-886620, 1:887377-887521, 1:887789-887982, 1:888552-888670, 1:889159-889274, 1:889381-889464, 1:891300-891395, 1:891472-891597, 1:892271-892407, 1:892476-892655, 1:894306-894463, 1:894592-894622, 1:896071-896182, 1:896670-896934, 1:897006-897132, 1:897203-897429, 1:897732-897853, 1:898081-898299, 1:898486-898635, 1:898714-898886, 1:899297-899390, 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